Add files using upload-large-folder tool
Browse files- .gitattributes +1 -0
- bifurcation_14.h5ad +3 -0
- bifurcation_14.pqdata/X.parquet +3 -0
- bifurcation_14.pqdata/layers/Ms.parquet +3 -0
- bifurcation_14.pqdata/layers/Mu.parquet +3 -0
- bifurcation_14.pqdata/layers/spliced.parquet +3 -0
- bifurcation_14.pqdata/layers/spliced_raw.parquet +3 -0
- bifurcation_14.pqdata/layers/true_velocity.parquet +3 -0
- bifurcation_14.pqdata/layers/unspliced.parquet +3 -0
- bifurcation_14.pqdata/layers/unspliced_raw.parquet +3 -0
- bifurcation_14.pqdata/layers/velocity.parquet +3 -0
- bifurcation_14.pqdata/obs.parquet +3 -0
- bifurcation_14.pqdata/obsm/X_pca.parquet +3 -0
- bifurcation_14.pqdata/obsm/true_sc_network.parquet +3 -0
- bifurcation_14.pqdata/obsp/connectivities.parquet +3 -0
- bifurcation_14.pqdata/obsp/distances.parquet +3 -0
- bifurcation_14.pqdata/uns.json +1 -0
- bifurcation_14.pqdata/uns/pca/variance.parquet +3 -0
- bifurcation_14.pqdata/uns/pca/variance_ratio.parquet +3 -0
- bifurcation_14.pqdata/uns/true_network.parquet +3 -0
- bifurcation_14.pqdata/uns/true_regulators.parquet +3 -0
- bifurcation_14.pqdata/uns/true_regulatory_network.parquet +3 -0
- bifurcation_14.pqdata/uns/true_skeleton.parquet +3 -0
- bifurcation_14.pqdata/uns/true_targets.parquet +3 -0
- bifurcation_14.pqdata/uns/velocity_params/perc.parquet +3 -0
- bifurcation_14.pqdata/var.parquet +3 -0
- bifurcation_14.pqdata/varm/PCs.parquet +3 -0
.gitattributes
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@@ -58,3 +58,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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postprocessed_pancreas_50_7.h5ad filter=lfs diff=lfs merge=lfs -text
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*.mp4 filter=lfs diff=lfs merge=lfs -text
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*.webm filter=lfs diff=lfs merge=lfs -text
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postprocessed_pancreas_50_7.h5ad filter=lfs diff=lfs merge=lfs -text
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bifurcation_14.h5ad filter=lfs diff=lfs merge=lfs -text
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bifurcation_14.h5ad
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bifurcation_14.pqdata/uns.json
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{"log1p": {}, "neighbors": {"connectivities_key": "connectivities", "distances_key": "distances", "params": {"method": "umap", "metric": "euclidean", "n_neighbors": 30, "n_pcs": 30, "random_state": 0}}, "pca": {"params": {"use_highly_variable": false, "zero_center": true}}, "velocity_params": {"fit_offset": false, "mode": "deterministic"}}
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bifurcation_14.pqdata/uns/pca/variance.parquet
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