Datasets:
File size: 25,640 Bytes
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"name": "cellmap",
"description": "CellMap segmentation-challenge benchmark over the OpenOrganelle volumes (CellMap-annotated _crop volumes). The _test0/_test1 volumes are lab self-annotated and belong to mitoem2.0, so they are excluded here. Official challenge train/val/test to be applied; all listed as train for now.",
"arrays": {
"image": "img",
"label": "mito"
},
"samples": {
"jrc_cos7-1a": 9,
"jrc_cos7-1b": 6,
"jrc_ctl-id8-1": 3,
"jrc_fly-mb-1a": 3,
"jrc_fly-vnc-1": 6,
"jrc_hela-2": 7,
"jrc_hela-3": 5,
"jrc_jurkat-1": 7,
"jrc_macrophage-2": 5,
"jrc_mus-kidney": 19,
"jrc_mus-liver": 16,
"jrc_mus-liver-zon-1": 24,
"jrc_mus-liver-zon-2": 8,
"jrc_mus-nacc-1": 1,
"jrc_sum159-1": 2,
"jrc_sum159-4": 10,
"jrc_ut21-1413-003": 14,
"jrc_zf-cardiac-1": 2
},
"volumes": [
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop234",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop234.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop236",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop236.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop237",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop237.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop239",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop239.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop248",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop248.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop252",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop252.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop254",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop254.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop256",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop256.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1a_recon-1_crop292",
"zarr": "data/openorganelle/jrc_cos7-1a_recon-1_crop292.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1b_recon-1_crop238",
"zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop238.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1b_recon-1_crop240",
"zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop240.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1b_recon-1_crop245",
"zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop245.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1b_recon-1_crop255",
"zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop255.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1b_recon-1_crop258",
"zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop258.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_cos7-1b_recon-1_crop291",
"zarr": "data/openorganelle/jrc_cos7-1b_recon-1_crop291.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_ctl-id8-1_recon-1_crop116",
"zarr": "data/openorganelle/jrc_ctl-id8-1_recon-1_crop116.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_ctl-id8-1_recon-1_crop118",
"zarr": "data/openorganelle/jrc_ctl-id8-1_recon-1_crop118.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_ctl-id8-1_recon-1_crop130",
"zarr": "data/openorganelle/jrc_ctl-id8-1_recon-1_crop130.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-mb-1a_recon-1_crop120",
"zarr": "data/openorganelle/jrc_fly-mb-1a_recon-1_crop120.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-mb-1a_recon-1_crop121",
"zarr": "data/openorganelle/jrc_fly-mb-1a_recon-1_crop121.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-mb-1a_recon-1_crop178",
"zarr": "data/openorganelle/jrc_fly-mb-1a_recon-1_crop178.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-vnc-1_recon-1_crop173",
"zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop173.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-vnc-1_recon-1_crop174",
"zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop174.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-vnc-1_recon-1_crop176",
"zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop176.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-vnc-1_recon-1_crop185",
"zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop185.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-vnc-1_recon-1_crop78",
"zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop78.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_fly-vnc-1_recon-1_crop79",
"zarr": "data/openorganelle/jrc_fly-vnc-1_recon-1_crop79.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-2_recon-1_crop1",
"zarr": "data/openorganelle/jrc_hela-2_recon-1_crop1.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-2_recon-1_crop113",
"zarr": "data/openorganelle/jrc_hela-2_recon-1_crop113.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-2_recon-1_crop155",
"zarr": "data/openorganelle/jrc_hela-2_recon-1_crop155.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-2_recon-1_crop23",
"zarr": "data/openorganelle/jrc_hela-2_recon-1_crop23.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-2_recon-1_crop3",
"zarr": "data/openorganelle/jrc_hela-2_recon-1_crop3.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-2_recon-1_crop6",
"zarr": "data/openorganelle/jrc_hela-2_recon-1_crop6.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-2_recon-1_crop9",
"zarr": "data/openorganelle/jrc_hela-2_recon-1_crop9.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-3_recon-1_crop101",
"zarr": "data/openorganelle/jrc_hela-3_recon-1_crop101.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-3_recon-1_crop111",
"zarr": "data/openorganelle/jrc_hela-3_recon-1_crop111.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-3_recon-1_crop181",
"zarr": "data/openorganelle/jrc_hela-3_recon-1_crop181.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-3_recon-1_crop33",
"zarr": "data/openorganelle/jrc_hela-3_recon-1_crop33.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_hela-3_recon-1_crop34",
"zarr": "data/openorganelle/jrc_hela-3_recon-1_crop34.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_jurkat-1_recon-1_crop112",
"zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop112.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_jurkat-1_recon-1_crop126",
"zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop126.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_jurkat-1_recon-1_crop180",
"zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop180.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_jurkat-1_recon-1_crop182",
"zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop182.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_jurkat-1_recon-1_crop37",
"zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop37.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_jurkat-1_recon-1_crop38",
"zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop38.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_jurkat-1_recon-1_crop43",
"zarr": "data/openorganelle/jrc_jurkat-1_recon-1_crop43.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_macrophage-2_recon-1_crop110",
"zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop110.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_macrophage-2_recon-1_crop31",
"zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop31.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_macrophage-2_recon-1_crop32",
"zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop32.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_macrophage-2_recon-1_crop39",
"zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop39.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_macrophage-2_recon-1_crop48",
"zarr": "data/openorganelle/jrc_macrophage-2_recon-1_crop48.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop129",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop129.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop140",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop140.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop141",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop141.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop147",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop147.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop148",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop148.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop156",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop156.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop158",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop158.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop160",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop160.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop161",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop161.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop162",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop162.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop163",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop163.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop164",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop164.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop165",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop165.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop166",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop166.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop184",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop184.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop221",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop221.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop229",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop229.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop230",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop230.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-kidney_recon-1_crop231",
"zarr": "data/openorganelle/jrc_mus-kidney_recon-1_crop231.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop266",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop266.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop267",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop267.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop268",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop268.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop269",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop269.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop270",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop270.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop272",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop272.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop273",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop273.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop274",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop274.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop275",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop275.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop276",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop276.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop277",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop277.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop279",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop279.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop298",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop298.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop313",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop313.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop319",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop319.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop320",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop320.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop321",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop321.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop322",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop322.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop323",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop323.zarr",
"split": "train"
},
{
"id": "openorganelle_jrc_mus-liver-zon-1_recon-1_crop325",
"zarr": "data/openorganelle/jrc_mus-liver-zon-1_recon-1_crop325.zarr",
"split": "train"
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