diff --git a/.gitattributes b/.gitattributes index 3de2cbb9804ef45620599e6e1a8b1e16a401bafc..ee5b501ddf7193d04757283fe8f2cf769999916e 100644 --- a/.gitattributes +++ b/.gitattributes @@ -184,3 +184,7 @@ EMPIAR/Matsui2025/Tomogram3/20231017_EGmilled24-2_60_031_28.0_Oct17.tif filter=l EMPIAR/Matsui2025/Tomogram3/20231017_EGmilled24-2_60_032_-65.0_Oct17.tif filter=lfs diff=lfs merge=lfs -text EMPIAR/Matsui2025/Tomogram3/20231017_EGmilled24-2_60_033_-68.0_Oct17.tif filter=lfs diff=lfs merge=lfs -text EMPIAR/Matsui2025/Tomogram3/gain_reference.mrc filter=lfs diff=lfs merge=lfs -text +*.tif filter=lfs diff=lfs merge=lfs -text +*.rec.nad filter=lfs diff=lfs merge=lfs -text +*.mrc filter=lfs diff=lfs merge=lfs -text +*.mod filter=lfs diff=lfs merge=lfs -text diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_1/spray_ctrl_1.processed.rec.nad b/CryoVesNet/images/spray_ctrl_1/spray_ctrl_1.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_1/spray_ctrl_1.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_1/spray_ctrl_1.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_2/spray_ctrl_2.processed.rec.nad b/CryoVesNet/images/spray_ctrl_2/spray_ctrl_2.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_2/spray_ctrl_2.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_2/spray_ctrl_2.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_3/spray_ctrl_3.processed.rec.nad b/CryoVesNet/images/spray_ctrl_3/spray_ctrl_3.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_3/spray_ctrl_3.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_3/spray_ctrl_3.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_4/spray_ctrl_4.processed.rec.nad b/CryoVesNet/images/spray_ctrl_4/spray_ctrl_4.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_4/spray_ctrl_4.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_4/spray_ctrl_4.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_5/spray_ctrl_5.processed.rec.nad b/CryoVesNet/images/spray_ctrl_5/spray_ctrl_5.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_5/spray_ctrl_5.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_5/spray_ctrl_5.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_6/spray_ctrl_6.processed.rec.nad b/CryoVesNet/images/spray_ctrl_6/spray_ctrl_6.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_6/spray_ctrl_6.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_6/spray_ctrl_6.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_7/spray_ctrl_7.processed.rec.nad b/CryoVesNet/images/spray_ctrl_7/spray_ctrl_7.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_7/spray_ctrl_7.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_7/spray_ctrl_7.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_8/spray_ctrl_8.processed.rec.nad b/CryoVesNet/images/spray_ctrl_8/spray_ctrl_8.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_8/spray_ctrl_8.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_8/spray_ctrl_8.processed.rec.nad diff --git a/EMPIAR/Khosrozadeh2024/processed/spray_ctrl_9/spray_ctrl_9.processed.rec.nad b/CryoVesNet/images/spray_ctrl_9/spray_ctrl_9.processed.rec.nad similarity index 100% rename from EMPIAR/Khosrozadeh2024/processed/spray_ctrl_9/spray_ctrl_9.processed.rec.nad rename to CryoVesNet/images/spray_ctrl_9/spray_ctrl_9.processed.rec.nad diff --git a/CryoVesNet/labels/spray_ctrl_1/cell_outline.mod b/CryoVesNet/labels/spray_ctrl_1/cell_outline.mod new file mode 100644 index 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index 8b5c5457991e2d61836cedd982b78a472eb3735f..0000000000000000000000000000000000000000 --- a/EMPIAR/Held2024/emd_45161.map/emd_45161.map +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:aa862cbaa7929543e469106182897fdcd19a07c1e16d03fa2b0c619bc3426aa5 -size 126813184 diff --git a/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_1/spray_ctrl_1.st b/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_1/spray_ctrl_1.st deleted file mode 100644 index da6100cfbd90047048baa4a5d5e3df6fe9b4118f..0000000000000000000000000000000000000000 --- a/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_1/spray_ctrl_1.st +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:153ac56c521bfb906f31d815ba19dccc103a677662a4145f6259bbc08c60672f -size 494930944 diff --git a/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_2/spray_ctrl_2.st b/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_2/spray_ctrl_2.st deleted file mode 100644 index 1e812297f68cc1c3f33901b6939f4ebaed1e0496..0000000000000000000000000000000000000000 --- a/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_2/spray_ctrl_2.st +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:2d2914c2add00c7d27e358fcfc842e79531b31578e25146ff1565331473a454b -size 629151744 diff --git a/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_2/spray_ctrl_2.st.mdoc b/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_2/spray_ctrl_2.st.mdoc deleted file mode 100644 index cf981c35c98802282fc074f2d1f61b2699792fab..0000000000000000000000000000000000000000 --- a/EMPIAR/Khosrozadeh2024/raw/spray_ctrl_2/spray_ctrl_2.st.mdoc +++ /dev/null @@ -1,1283 +0,0 @@ -PixelSpacing = 11.2 -ImageFile = 03.st -ImageSize = 2048 2048 -DataMode = 1 - -[T = SerialEM: Digitized by Gatan Camera on TF20 08-Jul-14 11:26:51 ] - -[T = Tilt axis angle = -5.0, binning = 1 spot = 6 camera = 0] - -[ZValue = 0] -TiltAngle = -59.9957 -StagePosition = -206.034 400.464 -Magnification = 19000 -Intensity = 0.504487 -ExposureDose = 1.11459 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = -0.707881 -ImageShift = -0.632558 0.150893 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 6 2364 539.033 -TargetDefocus = -9 - -[ZValue = 1] -TiltAngle = -58.9958 -StagePosition = -204.984 400.642 -Magnification = 19000 -Intensity = 0.50462 -ExposureDose = 1.0982 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = -0.590646 -ImageShift = -0.209021 0.0942326 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 20 2626 659.833 -TargetDefocus = -9 - -[ZValue = 2] -TiltAngle = -57.9671 -StagePosition = -204.995 400.713 -Magnification = 19000 -Intensity = 0.504757 -ExposureDose = 1.08221 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = -0.264945 -ImageShift = -0.287758 -0.00353296 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 19 2646 647.384 -TargetDefocus = -9 - -[ZValue = 3] -TiltAngle = -56.9032 -StagePosition = -204.996 400.731 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-TargetDefocus = -9 - -[ZValue = 9] -TiltAngle = -49.8658 -StagePosition = -205.001 400.743 -Magnification = 19000 -Intensity = 0.505679 -ExposureDose = 0.981734 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = -0.204036 -ImageShift = -0.815073 -0.728835 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 37 2112 641.884 -TargetDefocus = -9 - -[ZValue = 10] -TiltAngle = -48.5745 -StagePosition = -205.003 400.747 -Magnification = 19000 -Intensity = 0.505808 -ExposureDose = 0.969011 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = -0.126978 -ImageShift = -0.895705 -0.865234 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 36 2014 636.266 -TargetDefocus = -9 - -[ZValue = 11] -TiltAngle = -47.253 -StagePosition = -205.004 400.75 -Magnification = 19000 -Intensity = 0.505934 -ExposureDose = 0.956699 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = -0.0632706 -ImageShift = -0.945482 -0.956204 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 35 2031 633.307 -TargetDefocus = -9 - -[ZValue = 12] -TiltAngle = -45.8969 -StagePosition = -205.006 400.75 -Magnification = 19000 -Intensity = 0.506058 -ExposureDose = 0.944798 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 0.000436783 -ImageShift = -1.02369 -1.12231 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 38 1962 630.441 -TargetDefocus = -9 - -[ZValue = 13] -TiltAngle = -44.5032 -StagePosition = -205.007 400.752 -Magnification = 19000 -Intensity = 0.506178 -ExposureDose = 0.933311 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 0.0641432 -ImageShift = -1.11031 -1.3104 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 42 1932 628.724 -TargetDefocus = -9 - -[ZValue = 14] -TiltAngle = -43.0758 -StagePosition = -205.007 400.753 -Magnification = 19000 -Intensity = 0.506296 -ExposureDose = 0.922239 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 0.787236 -ImageShift = -1.17813 -1.459 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 47 1905 624.919 -TargetDefocus = -9 - -[ZValue = 15] -TiltAngle = -41.6152 -StagePosition = -205.011 400.754 -Magnification = 19000 -Intensity = 0.506411 -ExposureDose = 0.911585 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 0.989305 -ImageShift = -1.2533 -1.61266 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 47 1858 624.044 -TargetDefocus = -9 - -[ZValue = 16] -TiltAngle = -40.1224 -StagePosition = -205.009 400.755 -Magnification = 19000 -Intensity = 0.506527 -ExposureDose = 0.90135 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 1.0902 -ImageShift = -1.33975 -1.74922 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 51 1491 621.897 -TargetDefocus = -9 - -[ZValue = 17] -TiltAngle = -38.594 -StagePosition = -205.011 400.758 -Magnification = 19000 -Intensity = 0.506639 -ExposureDose = 0.891536 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 1.24703 -ImageShift = -1.4296 -1.89599 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 47 1422 621.508 -TargetDefocus = -9 - -[ZValue = 18] -TiltAngle = -37.0324 -StagePosition = -205.011 400.758 -Magnification = 19000 -Intensity = 0.506747 -ExposureDose = 0.882147 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 1.36317 -ImageShift = -1.49215 -2.00889 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 52 1474 621.335 -TargetDefocus = -9 - -[ZValue = 19] -TiltAngle = -35.4356 -StagePosition = -205.011 400.761 -Magnification = 19000 -Intensity = 0.506851 -ExposureDose = 0.873185 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 1.51162 -ImageShift = -1.533 -2.10751 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 55 1439 622.491 -TargetDefocus = -9 - -[ZValue = 20] -TiltAngle = -33.8062 -StagePosition = -205.009 400.758 -Magnification = 19000 -Intensity = 0.506952 -ExposureDose = 0.864654 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 1.65114 -ImageShift = -1.59943 -2.31466 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 52 1907 620.075 -TargetDefocus = -9 - -[ZValue = 21] -TiltAngle = -32.146 -StagePosition = -205.007 400.755 -Magnification = 19000 -Intensity = 0.507048 -ExposureDose = 0.856556 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 1.79066 -ImageShift = -1.62411 -2.41956 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 59 1873 619.862 -TargetDefocus = -9 - -[ZValue = 22] -TiltAngle = -30.4517 -StagePosition = -205.003 400.752 -Magnification = 19000 -Intensity = 0.50714 -ExposureDose = 0.848893 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 2.27533 -ImageShift = -1.67493 -2.55419 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 61 1784 618.426 -TargetDefocus = -9 - -[ZValue = 23] -TiltAngle = -28.7271 -StagePosition = -204.622 404.232 -Magnification = 19000 -Intensity = 0.507227 -ExposureDose = 0.841671 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 3.65284 -ImageShift = -0.115481 -0.215132 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 64 1306 610.262 -TargetDefocus = -9 - -[ZValue = 24] -TiltAngle = -26.9742 -StagePosition = -204.636 404.332 -Magnification = 19000 -Intensity = 0.50731 -ExposureDose = 0.834892 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 3.30313 -ImageShift = -0.0896792 -0.0378995 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 65 1331 613.373 -TargetDefocus = -9 - -[ZValue = 25] -TiltAngle = -25.1935 -StagePosition = -204.622 404.345 -Magnification = 19000 -Intensity = 0.50739 -ExposureDose = 0.828558 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 3.75382 -ImageShift = -0.0719648 -0.132137 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 65 1351 613.812 -TargetDefocus = -9 - -[ZValue = 26] -TiltAngle = -23.3854 -StagePosition = -204.621 404.373 -Magnification = 19000 -Intensity = 0.507466 -ExposureDose = 0.822674 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 3.82588 -ImageShift = -0.026021 -0.119621 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 70 1313 613.272 -TargetDefocus = -9 - -[ZValue = 27] -TiltAngle = -21.5496 -StagePosition = -204.619 404.388 -Magnification = 19000 -Intensity = 0.507538 -ExposureDose = 0.817241 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 3.93995 -ImageShift = 0.00937487 -0.100501 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 70 1260 612.691 -TargetDefocus = -9 - -[ZValue = 28] -TiltAngle = -19.6888 -StagePosition = -204.622 404.398 -Magnification = 19000 -Intensity = 0.507603 -ExposureDose = 0.812264 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 4.02602 -ImageShift = 0.00542211 -0.182431 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 66 1470 611.82 -TargetDefocus = -9 - -[ZValue = 29] -TiltAngle = -17.8066 -StagePosition = -204.622 404.407 -Magnification = 19000 -Intensity = 0.507663 -ExposureDose = 0.807746 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 4.49702 -ImageShift = -0.0661308 -0.327249 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 69 1262 606.493 -TargetDefocus = -9 - -[ZValue = 30] -TiltAngle = -15.9029 -StagePosition = -204.624 404.416 -Magnification = 19000 -Intensity = 0.507717 -ExposureDose = 0.803689 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 4.70507 -ImageShift = -0.0685428 -0.301798 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 67 1278 608.039 -TargetDefocus = -9 - -[ZValue = 31] -TiltAngle = -13.9822 -StagePosition = -204.625 404.418 -Magnification = 19000 -Intensity = 0.507765 -ExposureDose = 0.800097 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 4.93661 -ImageShift = -0.097168 -0.361358 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 69 1990 608.204 -TargetDefocus = -9 - -[ZValue = 32] -TiltAngle = -12.0434 -StagePosition = -204.625 404.423 -Magnification = 19000 -Intensity = 0.507807 -ExposureDose = 0.796972 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 4.54801 -ImageShift = -0.0877063 -0.359228 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 73 1550 609.504 -TargetDefocus = -9 - -[ZValue = 33] -TiltAngle = -10.0894 -StagePosition = -204.627 404.426 -Magnification = 19000 -Intensity = 0.507843 -ExposureDose = 0.794315 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 4.86952 -ImageShift = -0.0677782 -0.352561 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 70 1250 607.419 -TargetDefocus = -9 - -[ZValue = 34] -TiltAngle = -8.12081 -StagePosition = -204.63 404.431 -Magnification = 19000 -Intensity = 0.507872 -ExposureDose = 0.792131 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 5.17189 -ImageShift = -0.0495894 -0.343178 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 71 1264 607.473 -TargetDefocus = -9 - -[ZValue = 35] -TiltAngle = -6.14246 -StagePosition = -204.63 404.438 -Magnification = 19000 -Intensity = 0.507895 -ExposureDose = 0.790421 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 5.30453 -ImageShift = -0.0247949 -0.313415 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 69 2053 608.631 -TargetDefocus = -9 - -[ZValue = 36] -TiltAngle = -4.15532 -StagePosition = -204.631 404.443 -Magnification = 19000 -Intensity = 0.507912 -ExposureDose = 0.789187 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 5.61648 -ImageShift = -0.00250275 -0.291689 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 71 1242 607.482 -TargetDefocus = -9 - -[ZValue = 37] -TiltAngle = -2.16379 -StagePosition = -204.633 404.448 -Magnification = 19000 -Intensity = 0.507922 -ExposureDose = 0.788429 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 5.87367 -ImageShift = 0.0130739 -0.283882 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 73 1248 606.289 -TargetDefocus = -9 - -[ZValue = 38] -TiltAngle = -0.16836 -StagePosition = -204.633 404.454 -Magnification = 19000 -Intensity = 0.507926 -ExposureDose = 0.788149 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.13087 -ImageShift = 0.0496049 -0.227227 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 74 1243 607.12 -TargetDefocus = -9 - -[ZValue = 39] -TiltAngle = 1.82805 -StagePosition = -204.633 404.458 -Magnification = 19000 -Intensity = 0.507923 -ExposureDose = 0.788349 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.38806 -ImageShift = 0.0959962 -0.155144 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 68 1225 604.201 -TargetDefocus = -9 - -[ZValue = 40] -TiltAngle = 3.82543 -StagePosition = -204.633 404.466 -Magnification = 19000 -Intensity = 0.507914 -ExposureDose = 0.789029 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 5.67904 -ImageShift = 0.204543 0.0529821 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 72 1253 606.735 -TargetDefocus = -9 - -[ZValue = 41] -TiltAngle = 5.81745 -StagePosition = -204.635 404.475 -Magnification = 19000 -Intensity = 0.507899 -ExposureDose = 0.790189 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 5.98329 -ImageShift = 0.314838 0.233484 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 75 1709 604.246 -TargetDefocus = -9 - -[ZValue = 42] -TiltAngle = 7.80507 -StagePosition = -204.636 404.481 -Magnification = 19000 -Intensity = 0.507876 -ExposureDose = 0.79183 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 5.99161 -ImageShift = 0.454249 0.487595 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 71 1248 603.926 -TargetDefocus = -9 - -[ZValue = 43] -TiltAngle = 9.78147 -StagePosition = -204.635 404.49 -Magnification = 19000 -Intensity = 0.507848 -ExposureDose = 0.793952 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.0924 -ImageShift = 0.56805 0.690976 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 60 1244 601.985 -TargetDefocus = -9 - -[ZValue = 44] -TiltAngle = 11.7496 -StagePosition = -204.636 404.497 -Magnification = 19000 -Intensity = 0.507813 -ExposureDose = 0.796553 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.1932 -ImageShift = 0.663702 0.873159 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 64 1321 600.566 -TargetDefocus = -9 - -[ZValue = 45] -TiltAngle = 13.705 -StagePosition = -204.636 404.506 -Magnification = 19000 -Intensity = 0.507771 -ExposureDose = 0.799634 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.44456 -ImageShift = 0.765378 1.06566 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 56 1291 599.804 -TargetDefocus = -9 - -[ZValue = 46] -TiltAngle = 15.6477 -StagePosition = -204.636 404.515 -Magnification = 19000 -Intensity = 0.507723 -ExposureDose = 0.803194 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.60486 -ImageShift = 0.909372 1.35163 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 65 1286 599.449 -TargetDefocus = -9 - -[ZValue = 47] -TiltAngle = 17.57 -StagePosition = -204.638 404.524 -Magnification = 19000 -Intensity = 0.50767 -ExposureDose = 0.807231 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.74717 -ImageShift = 1.0015 1.51222 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 58 1857 596.643 -TargetDefocus = -9 - -[ZValue = 48] -TiltAngle = 19.4756 -StagePosition = -204.638 404.534 -Magnification = 19000 -Intensity = 0.50761 -ExposureDose = 0.811744 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.88948 -ImageShift = 1.09862 1.69043 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 61 1223 595.234 -TargetDefocus = -9 - -[ZValue = 49] -TiltAngle = 21.3607 -StagePosition = -204.638 404.546 -Magnification = 19000 -Intensity = 0.507544 -ExposureDose = 0.816733 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.83513 -ImageShift = 1.19013 1.86207 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 58 1238 595.156 -TargetDefocus = -9 - -[ZValue = 50] -TiltAngle = 23.2229 -StagePosition = -204.636 404.559 -Magnification = 19000 -Intensity = 0.507473 -ExposureDose = 0.822194 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.95339 -ImageShift = 1.28261 2.03158 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 56 1242 594.001 -TargetDefocus = -9 - -[ZValue = 51] -TiltAngle = 25.0559 -StagePosition = -204.636 404.574 -Magnification = 19000 -Intensity = 0.507396 -ExposureDose = 0.828126 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.05987 -ImageShift = 1.38275 2.20919 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 56 1264 592.506 -TargetDefocus = -9 - -[ZValue = 52] -TiltAngle = 26.8629 -StagePosition = -204.633 404.591 -Magnification = 19000 -Intensity = 0.507314 -ExposureDose = 0.834527 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.16635 -ImageShift = 1.49317 2.40794 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 55 1529 591.193 -TargetDefocus = -9 - -[ZValue = 53] -TiltAngle = 28.648 -StagePosition = -204.633 404.609 -Magnification = 19000 -Intensity = 0.50723 -ExposureDose = 0.841394 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.27283 -ImageShift = 1.56629 2.53169 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 43 1277 589.497 -TargetDefocus = -9 - -[ZValue = 54] -TiltAngle = 30.4024 -StagePosition = -204.903 401.166 -Magnification = 19000 -Intensity = 0.507142 -ExposureDose = 0.848725 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.07501 -ImageShift = 0.235563 0.393504 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 51 1248 588.609 -TargetDefocus = -9 - -[ZValue = 55] -TiltAngle = 32.1231 -StagePosition = -204.908 401.165 -Magnification = 19000 -Intensity = 0.507048 -ExposureDose = 0.856519 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.6366 -ImageShift = 0.233427 0.269249 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 47 1291 586.417 -TargetDefocus = -9 - -[ZValue = 56] -TiltAngle = 33.8135 -StagePosition = -204.909 401.174 -Magnification = 19000 -Intensity = 0.50695 -ExposureDose = 0.864772 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.44561 -ImageShift = 0.281092 0.379987 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 47 1859 584.049 -TargetDefocus = -9 - -[ZValue = 57] -TiltAngle = 35.4756 -StagePosition = -204.911 401.197 -Magnification = 19000 -Intensity = 0.506848 -ExposureDose = 0.873483 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.41677 -ImageShift = 0.295127 0.417704 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 44 1833 584.21 -TargetDefocus = -9 - -[ZValue = 58] -TiltAngle = 37.0929 -StagePosition = -204.909 401.238 -Magnification = 19000 -Intensity = 0.506741 -ExposureDose = 0.882647 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.27983 -ImageShift = 0.328109 0.491964 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 40 1910 581.222 -TargetDefocus = -9 - -[ZValue = 59] -TiltAngle = 38.6901 -StagePosition = -204.909 401.27 -Magnification = 19000 -Intensity = 0.50663 -ExposureDose = 0.892264 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.16991 -ImageShift = 0.362512 0.573102 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 33 1955 579.896 -TargetDefocus = -9 - -[ZValue = 60] -TiltAngle = 40.2439 -StagePosition = -204.911 401.31 -Magnification = 19000 -Intensity = 0.506516 -ExposureDose = 0.902331 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.49464 -ImageShift = 0.361751 0.570633 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 36 2006 581.639 -TargetDefocus = -9 - -[ZValue = 61] -TiltAngle = 41.7674 -StagePosition = -204.909 401.356 -Magnification = 19000 -Intensity = 0.506397 -ExposureDose = 0.912846 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.50374 -ImageShift = 0.384308 0.624066 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 34 1985 580.795 -TargetDefocus = -9 - -[ZValue = 62] -TiltAngle = 43.25 -StagePosition = -204.908 401.398 -Magnification = 19000 -Intensity = 0.506279 -ExposureDose = 0.923806 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.51916 -ImageShift = 0.406398 0.664869 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 34 2058 581.978 -TargetDefocus = -9 - -[ZValue = 63] -TiltAngle = 44.6964 -StagePosition = -204.908 401.437 -Magnification = 19000 -Intensity = 0.506158 -ExposureDose = 0.935208 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.53458 -ImageShift = 0.404203 0.639881 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 30 2009 580.959 -TargetDefocus = -9 - -[ZValue = 64] -TiltAngle = 46.1111 -StagePosition = -204.901 401.488 -Magnification = 19000 -Intensity = 0.506034 -ExposureDose = 0.947053 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 7.55 -ImageShift = 0.453251 0.745191 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 27 1987 583.357 -TargetDefocus = -9 - -[ZValue = 65] -TiltAngle = 47.4844 -StagePosition = -204.903 401.521 -Magnification = 19000 -Intensity = 0.505907 -ExposureDose = 0.959336 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.92921 -ImageShift = 0.439512 0.690129 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 27 2101 583.391 -TargetDefocus = -9 - -[ZValue = 66] -TiltAngle = 48.8298 -StagePosition = -204.901 401.562 -Magnification = 19000 -Intensity = 0.505777 -ExposureDose = 0.972059 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.55945 -ImageShift = 0.42923 0.656473 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 24 2102 584.453 -TargetDefocus = -9 - -[ZValue = 67] -TiltAngle = 50.1376 -StagePosition = -204.897 401.606 -Magnification = 19000 -Intensity = 0.505644 -ExposureDose = 0.98522 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.52089 -ImageShift = 0.436464 0.672197 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 20 2134 586.304 -TargetDefocus = -9 - -[ZValue = 68] -TiltAngle = 51.4167 -StagePosition = -204.898 401.638 -Magnification = 19000 -Intensity = 0.505509 -ExposureDose = 0.998818 -PixelSpacing = 11.2 -SpotSize = 6 -Defocus = 6.37882 -ImageShift = 0.45531 0.706917 -RotationAngle = 85 -ExposureTime = 1 -Binning = 1 -CameraIndex = 0 -MinMaxMean = 21 2208 589.87 -TargetDefocus = -9 - -[ZValue = 69] -TiltAngle = 52.6591 -StagePosition = -204.895 401.671 -Magnification = 19000 -Intensity = 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15:30:47 - -[ZValue = 22] -TiltAngle = -9.99326 -StagePosition = -88.8857 -36.046 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.35236 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -9.0671 -ImageShift = -0.0918529 0.904516 -RotationAngle = 85.5 -ExposureTime = 0.0705389 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 4 758 270.402 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:30:28 - -[ZValue = 23] -TiltAngle = -7.99393 -StagePosition = -88.8841 -36.026 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.34862 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -8.98769 -ImageShift = -0.18575 0.938911 -RotationAngle = 85.5 -ExposureTime = 0.0703437 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 3 644 244.725 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:29:56 - -[ZValue = 24] -TiltAngle = -5.99362 -StagePosition = -88.8857 -36.0019 -StageZ = -77.6938 -Magnification = 27500 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39.9984 -StagePosition = -88.5846 -33.9531 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.53342 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -5.2622 -ImageShift = 0.101226 -0.514786 -RotationAngle = 85.5 -ExposureTime = 0.0799829 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 0 730 224.568 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:57:40 - -[ZValue = 48] -TiltAngle = 41.9978 -StagePosition = -88.583 -33.9248 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.5569 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -4.88794 -ImageShift = 0.040183 -0.689506 -RotationAngle = 85.5 -ExposureTime = 0.0812074 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 1 724 225.349 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:57:49 - -[ZValue = 49] -TiltAngle = 43.9976 -StagePosition = -88.583 -33.8976 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.58245 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -4.53985 -ImageShift = 0.0310498 -0.765771 -RotationAngle = 85.5 -ExposureTime = 0.08254 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 2 880 228.099 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:57:56 - -[ZValue = 50] -TiltAngle = 45.9989 -StagePosition = -88.583 -33.8577 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.61037 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -4.13465 -ImageShift = 0.021167 -0.831149 -RotationAngle = 85.5 -ExposureTime = 0.0839963 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 1 1361 232.686 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:58:11 - -[ZValue = 51] -TiltAngle = 47.9982 -StagePosition = -89.0978 -32.4199 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.64081 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -3.18553 -ImageShift = 0.275223 -0.238235 -RotationAngle = 85.5 -ExposureTime = 0.085584 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 1 594 188.528 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:59:00 - -[ZValue = 52] -TiltAngle = 49.999 -StagePosition = -89.0963 -32.3245 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.67411 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -6.99134 -ImageShift = 0.367597 -0.312711 -RotationAngle = 85.5 -ExposureTime = 0.0873212 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 0 887 199.247 -TargetDefocus = -10 -DateTime = 19-Jun-17 15:59:20 - -[ZValue = 53] -TiltAngle = 51.9979 -StagePosition = -89.0994 -32.2784 -StageZ = -77.6938 -Magnification = 27500 -Intensity = 0.498464 -ExposureDose = 1.71066 -PixelSpacing = 7.5 -SpotSize = 5 -Defocus = -8.71375 -ImageShift = 0.351359 -0.573646 -RotationAngle = 85.5 -ExposureTime = 0.0892273 -Binning = 1 -CameraIndex = 0 -DividedBy2 = 1 -MagIndex = 25 -MinMaxMean = 1 680 195.893 -TargetDefocus = -10 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b/SynapseNet/active_zones/test/single_axis_tem/M13_CTRL_09201_S2_02_DIV31_02_MS.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/M13_CTRL_09201_S2_02_DIV31_02_MS.h5 rename to SynapseNet/active_zones/test/single_axis_tem/M13_CTRL_09201_S2_02_DIV31_02_MS.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/M13_CTRL_09201_S2_06_DIV31_06_MS.h5 b/SynapseNet/active_zones/test/single_axis_tem/M13_CTRL_09201_S2_06_DIV31_06_MS.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/M13_CTRL_09201_S2_06_DIV31_06_MS.h5 rename to SynapseNet/active_zones/test/single_axis_tem/M13_CTRL_09201_S2_06_DIV31_06_MS.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/M13_CTRL_22723_O2_05_DIV29_05_MS_.h5 b/SynapseNet/active_zones/test/single_axis_tem/M13_CTRL_22723_O2_05_DIV29_05_MS_.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/M13_CTRL_22723_O2_05_DIV29_05_MS_.h5 rename to 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b/SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_01_MS_09204_F1.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_01_MS_09204_F1.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_01_MS_09204_F1.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_03_MS_09204_F1.h5 b/SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_03_MS_09204_F1.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_03_MS_09204_F1.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_03_MS_09204_F1.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_04_MS_09204_M1.h5 b/SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_04_MS_09204_M1.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_04_MS_09204_M1.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_04_MS_09204_M1.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_05_MS_09204_F1.h5 b/SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_05_MS_09204_F1.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_05_MS_09204_F1.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_05_MS_09204_F1.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_09_MS_09002_B3.h5 b/SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_09_MS_09002_B3.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_09_MS_09002_B3.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_09_MS_09002_B3.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_1.2_MS_09002_B1.h5 b/SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_1.2_MS_09002_B1.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_1.2_MS_09002_B1.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_1.2_MS_09002_B1.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_10_MS_09002_B3.h5 b/SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_10_MS_09002_B3.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_MF_DIV28_10_MS_09002_B3.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_MF_DIV28_10_MS_09002_B3.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_Unt_SC_05646_D4_02_DIV16_mtk_02.h5 b/SynapseNet/active_zones/test/single_axis_tem/WT_Unt_SC_05646_D4_02_DIV16_mtk_02.h5 similarity index 100% rename from synapse-net/active_zones/test/single_axis_tem/WT_Unt_SC_05646_D4_02_DIV16_mtk_02.h5 rename to SynapseNet/active_zones/test/single_axis_tem/WT_Unt_SC_05646_D4_02_DIV16_mtk_02.h5 diff --git a/synapse-net/active_zones/test/single_axis_tem/WT_Unt_SC_09175_C4_04_DIV15_mtk_04.h5 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rename from synapse-net/active_zones/train/single_axis_tem/20190807_23032_D4_SC_08_SP.h5 rename to SynapseNet/active_zones/train/single_axis_tem/20190807_23032_D4_SC_08_SP.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/20190807_23032_D4_SC_09_SP.h5 b/SynapseNet/active_zones/train/single_axis_tem/20190807_23032_D4_SC_09_SP.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/20190807_23032_D4_SC_09_SP.h5 rename to SynapseNet/active_zones/train/single_axis_tem/20190807_23032_D4_SC_09_SP.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/20190807_23032_D4_SC_10_SP.h5 b/SynapseNet/active_zones/train/single_axis_tem/20190807_23032_D4_SC_10_SP.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/20190807_23032_D4_SC_10_SP.h5 rename to SynapseNet/active_zones/train/single_axis_tem/20190807_23032_D4_SC_10_SP.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/M13_CTRL_09201_S1_01_DIV31_01.h5 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b/SynapseNet/active_zones/train/single_axis_tem/M13_DKO_09201_U1_5.2_DIV31_5.2_MS.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/M13_DKO_09201_U1_5.2_DIV31_5.2_MS.h5 rename to SynapseNet/active_zones/train/single_axis_tem/M13_DKO_09201_U1_5.2_DIV31_5.2_MS.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/M13_DKO_22723_A1_06_DIV29_06_MS.h5 b/SynapseNet/active_zones/train/single_axis_tem/M13_DKO_22723_A1_06_DIV29_06_MS.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/M13_DKO_22723_A1_06_DIV29_06_MS.h5 rename to SynapseNet/active_zones/train/single_axis_tem/M13_DKO_22723_A1_06_DIV29_06_MS.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/M13_DKO_22723_A1_4.2_DIV29_4.2_MS.h5 b/SynapseNet/active_zones/train/single_axis_tem/M13_DKO_22723_A1_4.2_DIV29_4.2_MS.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/M13_DKO_22723_A1_4.2_DIV29_4.2_MS.h5 rename to 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b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV14_07_MS_C2_09175_CA3.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV14_07_MS_C2_09175_CA3.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV14_07_MS_C2_09175_CA3.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV14_3.1_MS_D2_09175_CA3.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV14_3.1_MS_D2_09175_CA3.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV14_3.1_MS_D2_09175_CA3.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV14_3.1_MS_D2_09175_CA3.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV14_6.2_MS_E2_09175_CA3_2.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV14_6.2_MS_E2_09175_CA3_2.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV14_6.2_MS_E2_09175_CA3_2.h5 rename to 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100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_02_MS_09204_M1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_02_MS_09204_M1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_K1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_K1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_K1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_K1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_M1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_M1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_M1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_03_MS_09204_M1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09002_B2.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09002_B2.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09002_B2.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09002_B2.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09204_F1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09204_F1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09204_F1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_04_MS_09204_F1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_06_MS_09204_F1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_06_MS_09204_F1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_06_MS_09204_F1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_06_MS_09204_F1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09002_B2.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09002_B2.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09002_B2.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09002_B2.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09204_F2.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09204_F2.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09204_F2.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_07_MS_09204_F2.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09002_B3.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09002_B3.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09002_B3.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09002_B3.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09204_F2.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09204_F2.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09204_F2.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_08_MS_09204_F2.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_1.2_MS_09204_F1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_1.2_MS_09204_F1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_1.2_MS_09204_F1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_1.2_MS_09204_F1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_2.2_MS_09002_B1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_2.2_MS_09002_B1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_2.2_MS_09002_B1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_2.2_MS_09002_B1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_2.3_MS_09002_B1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_2.3_MS_09002_B1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_2.3_MS_09002_B1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_2.3_MS_09002_B1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_3.2_MS_09204_K1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_3.2_MS_09204_K1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_3.2_MS_09204_K1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_3.2_MS_09204_K1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_3.3_MS_09204_K1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_3.3_MS_09204_K1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_3.3_MS_09204_K1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_3.3_MS_09204_K1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_3.4_MS_09204_K1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_3.4_MS_09204_K1.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_3.4_MS_09204_K1.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_3.4_MS_09204_K1.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_MF_DIV28_4.2_MS_09204_M1.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_MF_DIV28_4.2_MS_09204_M1.h5 similarity 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a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_05646_D1_5.2_DIV16_5.2.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_05646_D1_5.2_DIV16_5.2.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_05646_D1_5.2_DIV16_5.2.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_05646_D1_5.2_DIV16_5.2.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_01_DIV16_mtk_01.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_01_DIV16_mtk_01.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_01_DIV16_mtk_01.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_01_DIV16_mtk_01.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_04_DIV16_mtk_04.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_04_DIV16_mtk_04.h5 similarity index 100% rename from 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a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_08_DIV16_mtk_08.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_08_DIV16_mtk_08.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_08_DIV16_mtk_08.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_05646_D4_08_DIV16_mtk_08.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_01_DIV16_mtk_01.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_01_DIV16_mtk_01.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_01_DIV16_mtk_01.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_01_DIV16_mtk_01.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_02_DIV16_mtk_02.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_02_DIV16_mtk_02.h5 similarity index 100% rename from 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a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_03_DIV16_mtk_05.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_03_DIV16_mtk_05.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_03_DIV16_mtk_05.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_B5_03_DIV16_mtk_05.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_01_DIV15_mtk_01.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_01_DIV15_mtk_01.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_01_DIV15_mtk_01.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_01_DIV15_mtk_01.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_02_DIV15_mtk_02.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_02_DIV15_mtk_02.h5 similarity index 100% rename from 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a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_08_DIV15_mtk_08.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_08_DIV15_mtk_08.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_08_DIV15_mtk_08.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_C4_08_DIV15_mtk_08.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_D4_01_DIV14_mtk_01.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_D4_01_DIV14_mtk_01.h5 similarity index 100% rename from synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_D4_01_DIV14_mtk_01.h5 rename to SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_D4_01_DIV14_mtk_01.h5 diff --git a/synapse-net/active_zones/train/single_axis_tem/WT_Unt_SC_09175_D4_02_DIV14_mtk_02.h5 b/SynapseNet/active_zones/train/single_axis_tem/WT_Unt_SC_09175_D4_02_DIV14_mtk_02.h5 similarity index 100% rename from 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