diff --git "a/annotation_human_G029.tsv" "b/annotation_human_G029.tsv" new file mode 100644--- /dev/null +++ "b/annotation_human_G029.tsv" @@ -0,0 +1,64838 @@ + seqname source feature start end score strand frame gene_id gene_type gene_name level havana_gene tag +0 GL000009.2 ENSEMBL gene 56140 58376 2237.0 - 0 ENSG00000278704.1 protein_coding BX004987.1 3 +1 GL000194.1 ENSEMBL gene 53590 115018 2179.0 - 0 ENSG00000277400.1 protein_coding AC145212.1 3 +2 GL000194.1 ENSEMBL gene 53594 115055 1599.0 - 0 ENSG00000274847.1 protein_coding MAFIP 3 +3 GL000195.1 ENSEMBL gene 37434 37534 101.0 - 0 ENSG00000277428.1 misc_RNA RF00019 3 +4 GL000195.1 ENSEMBL gene 42939 49164 2195.0 - 0 ENSG00000276256.1 protein_coding AC011043.1 3 +5 GL000195.1 ENSEMBL gene 173872 179372 1468.0 + 0 ENSG00000278198.1 protein_coding AC011043.2 3 +6 GL000205.2 ENSEMBL gene 93050 93150 101.0 - 0 ENSG00000276932.1 misc_RNA RF00019 3 +7 GL000205.2 ENSEMBL gene 99351 104855 1468.0 - 0 ENSG00000273496.1 protein_coding AC011841.1 3 +8 GL000209.2 HAVANA gene 2844 11554 1035.0 - 0 ENSG00000273735.4 protein_coding KIR3DL2 2 OTTHUMG00000189013.2 +9 GL000209.2 HAVANA gene 13877 27891 1101.0 - 0 ENSG00000273517.1 protein_coding KIR2DS1 2 OTTHUMG00000188995.1 +10 GL000209.2 HAVANA gene 29981 44855 1455.0 - 0 ENSG00000277650.1 protein_coding AL133414.2 2 OTTHUMG00000188996.1 +11 GL000209.2 HAVANA gene 46835 56299 1596.0 - 0 ENSG00000274676.1 protein_coding KIR2DL5A 2 OTTHUMG00000188997.1 +12 GL000209.2 HAVANA gene 58558 72919 1541.0 - 0 ENSG00000276534.5 protein_coding KIR3DS1 2 OTTHUMG00000188998.1 +13 GL000209.2 HAVANA gene 74867 85943 1742.0 - 0 ENSG00000274193.4 protein_coding KIR2DL4 2 OTTHUMG00000188999.1 +14 GL000209.2 HAVANA gene 91108 104511 1294.0 - 0 ENSG00000276518.1 protein_coding KIR3DP1 2 OTTHUMG00000189000.1 +15 GL000209.2 HAVANA gene 106757 121079 1371.0 - 0 ENSG00000273661.5 protein_coding AL133414.1 2 OTTHUMG00000189001.1 +16 GL000209.2 HAVANA gene 106543 137319 2030.0 - 0 ENSG00000278152.2 protein_coding KIR2DS2 2 OTTHUMG00000189002.1 +17 GL000209.2 HAVANA gene 139698 151260 1238.0 - 0 ENSG00000276433.1 protein_coding KIR3DL3 2 OTTHUMG00000189003.2 +18 GL000209.2 HAVANA gene 162305 167842 2127.0 - 0 ENSG00000277267.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000189014.1 +19 GL000209.2 HAVANA gene 174853 175165 183.0 - 0 ENSG00000274271.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000189015.1 +20 GL000213.1 ENSEMBL gene 127840 127946 107.0 - 0 ENSG00000278793.1 snRNA RF00026 3 +21 GL000213.1 ENSEMBL gene 108007 139659 2637.0 - 0 ENSG00000277630.4 protein_coding BX072566.1 3 ncRNA_host +22 GL000216.2 ENSEMBL gene 93197 93309 113.0 - 0 ENSG00000274202.1 snRNA RF00004 3 +23 GL000218.1 ENSEMBL gene 51867 54893 3027.0 - 0 ENSG00000278384.1 protein_coding AL354822.1 3 +24 GL000219.1 ENSEMBL gene 54224 83311 372.0 - 0 ENSG00000273748.1 protein_coding AL592183.1 3 +25 GL000220.1 ENSEMBL gene 105287 105376 90.0 + 0 ENSG00000276197.1 misc_RNA RF01518 3 +26 GL000220.1 ENSEMBL gene 112025 112177 153.0 + 0 ENSG00000274917.1 rRNA RNA5-8SN2 3 +27 GL000220.1 ENSEMBL gene 149259 149348 90.0 + 0 ENSG00000273937.1 misc_RNA RF01518 3 +28 GL000220.1 ENSEMBL gene 155997 156149 153.0 + 0 ENSG00000273730.1 rRNA RNA5-8SN4 3 +29 GL000225.1 ENSEMBL gene 183252 183364 113.0 + 0 ENSG00000276711.1 snRNA RF00004 3 +30 GL000250.2 HAVANA gene 49218 49589 372.0 - 0 ENSG00000272603.1 processed_pseudogene NOP56P1 2 OTTHUMG00000148686.1 +31 GL000250.2 HAVANA gene 103454 104591 709.0 - 0 ENSG00000272793.1 processed_transcript CR759954.1 2 OTTHUMG00000148688.1 +32 GL000250.2 HAVANA gene 127000 127631 632.0 + 0 ENSG00000272613.1 processed_pseudogene RPL13P 2 OTTHUMG00000148690.1 +33 GL000250.2 HAVANA gene 125209 128934 2458.0 - 0 ENSG00000272857.1 processed_transcript LINC01623 2 OTTHUMG00000148687.1 +34 GL000250.2 HAVANA gene 154416 155490 1075.0 - 0 ENSG00000236614.1 processed_pseudogene ZNF90P2 2 OTTHUMG00000148689.1 +35 GL000250.2 HAVANA gene 162114 162906 413.0 + 0 ENSG00000234411.1 processed_transcript HCG14 2 OTTHUMG00000148692.1 +36 GL000250.2 ENSEMBL gene 181230 181329 100.0 + 0 ENSG00000264025.1 snRNA RF00026 3 +37 GL000250.2 HAVANA gene 168586 189574 7987.0 - 0 ENSG00000234495.7 protein_coding TRIM27 2 OTTHUMG00000148849.1 +38 GL000250.2 HAVANA gene 251788 253069 1032.0 + 0 ENSG00000224642.2 processed_transcript HCG15 2 OTTHUMG00000148693.1 overlapping_locus +39 GL000250.2 HAVANA gene 252385 254160 317.0 + 0 ENSG00000241408.1 processed_transcript CR759957.1 2 OTTHUMG00000148691.1 overlapping_locus +40 GL000250.2 HAVANA gene 260409 270941 3176.0 - 0 ENSG00000225351.4 protein_coding ZNF311 2 OTTHUMG00000148791.1 +41 GL000250.2 HAVANA gene 292305 293232 928.0 - 0 ENSG00000236070.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000148793.1 +42 GL000250.2 HAVANA gene 309838 310865 1028.0 - 0 ENSG00000226463.1 protein_coding OR2W1 2 OTTHUMG00000148790.3 +43 GL000250.2 HAVANA gene 351930 352936 1007.0 - 0 ENSG00000233054.3 protein_coding OR2B3 2 OTTHUMG00000148792.3 +44 GL000250.2 HAVANA gene 366573 367511 939.0 + 0 ENSG00000234305.1 unprocessed_pseudogene OR2J1 2 OTTHUMG00000148694.2 +45 GL000250.2 HAVANA gene 377511 378446 936.0 + 0 ENSG00000226271.1 protein_coding OR2J3 2 OTTHUMG00000148696.2 +46 GL000250.2 HAVANA gene 389829 394527 389.0 + 0 ENSG00000224229.1 processed_transcript CR942175.1 2 OTTHUMG00000148843.1 +47 GL000250.2 HAVANA gene 403496 404432 937.0 - 0 ENSG00000229040.2 unprocessed_pseudogene CR774181.1 2 OTTHUMG00000148695.1 +48 GL000250.2 HAVANA gene 438929 440200 1272.0 + 0 ENSG00000225550.4 protein_coding OR2J2 2 OTTHUMG00000148699.3 +49 GL000250.2 HAVANA gene 532565 532719 155.0 + 0 ENSG00000226799.1 processed_transcript CR936918.1 2 OTTHUMG00000148697.1 +50 GL000250.2 HAVANA gene 534096 535055 960.0 - 0 ENSG00000230754.1 unprocessed_pseudogene OR2U2P 2 OTTHUMG00000148698.1 +51 GL000250.2 HAVANA gene 556363 557305 943.0 + 0 ENSG00000237690.1 unprocessed_pseudogene CR936918.2 2 OTTHUMG00000148701.1 +52 GL000250.2 HAVANA gene 572356 573321 966.0 + 0 ENSG00000236927.4 protein_coding OR14J1 2 OTTHUMG00000148700.2 +53 GL000250.2 HAVANA gene 688274 697631 218.0 - 0 ENSG00000242289.1 processed_transcript OR5V1 2 OTTHUMG00000148703.1 overlapping_locus +54 GL000250.2 HAVANA gene 704970 706641 1672.0 + 0 ENSG00000230505.4 protein_coding OR10C1 2 OTTHUMG00000148710.3 +55 GL000250.2 HAVANA gene 710535 715763 146.0 - 0 ENSG00000229181.1 processed_transcript OR12D3 2 OTTHUMG00000148709.3 overlapping_locus +56 GL000250.2 HAVANA gene 691169 722731 2864.0 - 0 ENSG00000232289.8 protein_coding OR11A1 2 OTTHUMG00000148704.1 overlapping_locus +57 GL000250.2 HAVANA gene 722841 729989 3708.0 + 0 ENSG00000229125.8 protein_coding OR2H1 2 OTTHUMG00000148708.1 +58 GL000250.2 HAVANA gene 730257 735467 381.0 - 0 ENSG00000237421.1 unprocessed_pseudogene UBDP1 2 OTTHUMG00000148706.1 +59 GL000250.2 HAVANA gene 740686 741732 1047.0 - 0 ENSG00000229136.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000148702.1 +60 GL000250.2 HAVANA gene 752427 753563 1137.0 - 0 ENSG00000234954.3 protein_coding MAS1L 2 OTTHUMG00000148707.2 +61 GL000250.2 HAVANA gene 754933 755338 406.0 - 0 ENSG00000232974.3 processed_pseudogene RPS17P1 2 OTTHUMG00000148705.1 +62 GL000250.2 HAVANA gene 763171 776217 877.0 + 0 ENSG00000224753.1 processed_transcript CR759956.1 2 OTTHUMG00000148711.1 +63 GL000250.2 HAVANA gene 795087 799235 2777.0 + 0 ENSG00000235788.5 processed_transcript LINC01015 2 OTTHUMG00000148712.1 +64 GL000250.2 HAVANA gene 803371 804454 1084.0 - 0 ENSG00000227576.1 unprocessed_pseudogene GPR53P 2 OTTHUMG00000148717.1 +65 GL000250.2 HAVANA gene 818913 819860 948.0 + 0 ENSG00000226896.2 unprocessed_pseudogene OR2I1P 2 OTTHUMG00000148769.1 +66 GL000250.2 HAVANA gene 821307 825621 990.0 - 0 ENSG00000226898.2 protein_coding UBD 2 OTTHUMG00000148765.1 overlapping_locus +67 GL000250.2 HAVANA gene 839603 840530 928.0 + 0 ENSG00000229469.2 unprocessed_pseudogene OR2H5P 2 OTTHUMG00000148767.1 +68 GL000250.2 HAVANA gene 843154 843443 290.0 + 0 ENSG00000225305.2 processed_pseudogene TMEM183AP1 2 OTTHUMG00000148770.1 +69 GL000250.2 ENSEMBL gene 847943 848026 84.0 + 0 ENSG00000265634.1 snoRNA SNORD32B 3 +70 GL000250.2 HAVANA gene 848202 848719 518.0 + 0 ENSG00000224053.1 processed_pseudogene RPL13AP 2 OTTHUMG00000148764.1 +71 GL000250.2 HAVANA gene 853148 854731 1584.0 + 0 ENSG00000224319.4 protein_coding OR2H2 2 OTTHUMG00000148762.1 +72 GL000250.2 HAVANA gene 821307 898877 7010.0 - 0 ENSG00000232569.8 protein_coding GABBR1 2 OTTHUMG00000148761.2 overlapping_locus +73 GL000250.2 HAVANA gene 901773 902056 284.0 - 0 ENSG00000236971.3 processed_pseudogene SUMO2P1 2 OTTHUMG00000148763.1 +74 GL000250.2 HAVANA gene 922690 938080 3058.0 + 0 ENSG00000234096.9 protein_coding MOG 2 OTTHUMG00000148766.2 +75 GL000250.2 HAVANA gene 938191 938841 651.0 - 0 ENSG00000227858.1 protein_coding ZFP57 2 OTTHUMG00000148768.2 +76 GL000250.2 HAVANA gene 1057586 1058560 975.0 - 0 ENSG00000236225.1 unprocessed_pseudogene HCG4 2 OTTHUMG00000148732.1 +77 GL000250.2 HAVANA gene 1056693 1063412 5253.0 + 0 ENSG00000206507.9 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000148714.3 +78 GL000250.2 HAVANA gene 1066038 1068045 734.0 + 0 ENSG00000260538.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172773.1 +79 GL000250.2 HAVANA gene 1068817 1069613 797.0 - 0 ENSG00000237554.4 processed_pseudogene RPL7AP7 2 OTTHUMG00000148715.1 +80 GL000250.2 HAVANA gene 1078185 1078316 132.0 - 0 ENSG00000235714.1 unprocessed_pseudogene MICG 2 OTTHUMG00000148716.1 +81 GL000250.2 HAVANA gene 1092997 1093977 981.0 - 0 ENSG00000277480.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000148724.1 +82 GL000250.2 HAVANA gene 1092579 1096751 1836.0 + 0 ENSG00000276051.4 protein_coding HLA-G 2 OTTHUMG00000148844.3 +83 GL000250.2 HAVANA gene 1117760 1117891 132.0 - 0 ENSG00000278443.1 unprocessed_pseudogene CR925767.1 2 OTTHUMG00000148719.1 +84 GL000250.2 HAVANA gene 1147035 1148001 967.0 - 0 ENSG00000228490.1 unprocessed_pseudogene CT009496.1 2 OTTHUMG00000148727.1 +85 GL000250.2 HAVANA gene 1147491 1150213 1088.0 + 0 ENSG00000231904.3 unprocessed_pseudogene HLA-H 2 OTTHUMG00000148718.1 +86 GL000250.2 HAVANA gene 1156287 1157418 450.0 + 0 ENSG00000232988.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000148728.1 +87 GL000250.2 HAVANA gene 1166252 1166618 192.0 + 0 ENSG00000235697.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000148723.1 +88 GL000250.2 HAVANA gene 1167491 1168353 328.0 - 0 ENSG00000224538.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000148725.1 +89 GL000250.2 HAVANA gene 1185660 1186650 991.0 - 0 ENSG00000231287.2 unprocessed_pseudogene HCG4B 2 OTTHUMG00000148734.1 +90 GL000250.2 HAVANA gene 1186136 1188913 1037.0 + 0 ENSG00000233964.2 unprocessed_pseudogene HLA-K 2 OTTHUMG00000148733.1 +91 GL000250.2 HAVANA gene 1192024 1192209 186.0 + 0 ENSG00000227366.1 unprocessed_pseudogene HLA-U 2 OTTHUMG00000148731.1 +92 GL000250.2 HAVANA gene 1199822 1200814 993.0 - 0 ENSG00000234831.1 unprocessed_pseudogene CR759913.1 2 OTTHUMG00000148729.1 +93 GL000250.2 HAVANA gene 1214309 1216283 771.0 + 0 ENSG00000235144.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000148730.2 +94 GL000250.2 HAVANA gene 1250921 1251317 258.0 + 0 ENSG00000235809.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000148726.1 +95 GL000250.2 HAVANA gene 1252149 1253026 335.0 - 0 ENSG00000236203.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000148720.1 +96 GL000250.2 HAVANA gene 1263830 1264825 996.0 - 0 ENSG00000223798.1 unprocessed_pseudogene CR759960.1 2 OTTHUMG00000148722.1 overlapping_locus +97 GL000250.2 HAVANA gene 1264292 1267665 1634.0 + 0 ENSG00000228524.7 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000148735.1 +98 GL000250.2 HAVANA gene 1147348 1267669 7498.0 + 0 ENSG00000229215.9 protein_coding HLA-A 2 OTTHUMG00000148721.2 +99 GL000250.2 HAVANA gene 1289773 1291063 984.0 + 0 ENSG00000235372.1 processed_pseudogene ETF1P1 2 OTTHUMG00000148775.1 +100 GL000250.2 ENSEMBL gene 1293976 1294043 68.0 + 0 ENSG00000273601.1 misc_RNA RF02218 3 +101 GL000250.2 ENSEMBL gene 1316213 1316288 76.0 + 0 ENSG00000276608.1 misc_RNA RF02219 3 +102 GL000250.2 ENSEMBL gene 1319178 1319281 104.0 + 0 ENSG00000275424.1 misc_RNA RF02220 3 +103 GL000250.2 HAVANA gene 1258723 1319738 20819.0 - 0 ENSG00000236598.6 processed_transcript ZNRD1ASP 2 OTTHUMG00000148736.1 overlapping_locus +104 GL000250.2 HAVANA gene 1316997 1323001 3672.0 + 0 ENSG00000235443.6 protein_coding ZNRD1 2 OTTHUMG00000148781.1 ncRNA_host +105 GL000250.2 HAVANA gene 1324801 1328425 2538.0 + 0 ENSG00000233314.6 protein_coding PPP1R11 2 OTTHUMG00000148778.2 +106 GL000250.2 HAVANA gene 1328358 1333979 2206.0 - 0 ENSG00000236967.8 protein_coding RNF39 2 OTTHUMG00000148776.1 +107 GL000250.2 HAVANA gene 1368539 1371196 1409.0 - 0 ENSG00000224542.7 protein_coding TRIM31 2 OTTHUMG00000148779.3 +108 GL000250.2 HAVANA gene 1369808 1372814 276.0 + 0 ENSG00000235722.1 processed_transcript TRIM31-AS1 2 OTTHUMG00000148738.1 +109 GL000250.2 ENSEMBL gene 1390898 1391059 162.0 - 0 ENSG00000265674.1 snoRNA RF00554 3 +110 GL000250.2 HAVANA gene 1394224 1406831 2477.0 + 0 ENSG00000224496.7 protein_coding TRIM40 2 OTTHUMG00000148777.2 +111 GL000250.2 HAVANA gene 1410041 1419029 3546.0 - 0 ENSG00000237703.8 protein_coding TRIM10 2 OTTHUMG00000148780.1 +112 GL000250.2 HAVANA gene 1421286 1430776 2515.0 + 0 ENSG00000235259.8 protein_coding TRIM15 2 OTTHUMG00000148737.2 +113 GL000250.2 HAVANA gene 1444849 1446672 1203.0 - 0 ENSG00000236798.1 processed_pseudogene PAIP1P1 2 OTTHUMG00000148739.1 overlapping_locus +114 GL000250.2 HAVANA gene 1442506 1471482 4377.0 - 0 ENSG00000228881.7 protein_coding TRIM26 2 OTTHUMG00000148847.3 overlapping_locus +115 GL000250.2 HAVANA gene 1496350 1500326 753.0 + 0 ENSG00000249434.1 unprocessed_pseudogene TRIM26BP 2 OTTHUMG00000148740.1 +116 GL000250.2 HAVANA gene 1492088 1655624 641.0 - 0 ENSG00000236729.6 processed_transcript HCG17 2 OTTHUMG00000148748.2 fragmented_locus,overlapping_locus +117 GL000250.2 HAVANA gene 1620298 1656640 5419.0 - 0 ENSG00000235727.7 processed_transcript HCG18 2 OTTHUMG00000148743.2 overlapping_locus +118 GL000250.2 HAVANA gene 1655969 1673225 4226.0 + 0 ENSG00000230308.10 protein_coding TRIM39 2 OTTHUMG00000148747.2 +119 GL000250.2 HAVANA gene 1658802 1676380 2717.0 + 0 ENSG00000241779.6 protein_coding RPP21 2 OTTHUMG00000148741.1 +120 GL000250.2 HAVANA gene 1680912 1681046 135.0 + 0 ENSG00000232232.1 unprocessed_pseudogene HLA-N 2 OTTHUMG00000148742.1 +121 GL000250.2 HAVANA gene 1688775 1689408 634.0 - 0 ENSG00000229149.1 processed_pseudogene CR759890.1 2 OTTHUMG00000148744.1 +122 GL000250.2 HAVANA gene 1692607 1693775 1169.0 - 0 ENSG00000223560.1 processed_pseudogene UBQLN1P1 2 OTTHUMG00000148745.1 +123 GL000250.2 HAVANA gene 1744211 1748815 1055.0 + 0 ENSG00000236727.1 unprocessed_pseudogene MICC 2 OTTHUMG00000148746.1 +124 GL000250.2 HAVANA gene 1845770 1848724 851.0 + 0 ENSG00000225382.1 processed_transcript LINC02569 2 OTTHUMG00000148794.1 +125 GL000250.2 HAVANA gene 1870881 1883062 6707.0 - 0 ENSG00000206412.6 protein_coding GNL1 2 OTTHUMG00000148795.3 +126 GL000250.2 HAVANA gene 1988978 2002543 2766.0 - 0 ENSG00000227222.7 protein_coding DHX16 2 OTTHUMG00000148755.3 +127 GL000250.2 HAVANA gene 2005896 2017402 4599.0 - 0 ENSG00000230341.8 protein_coding PPP1R18 2 OTTHUMG00000148752.1 +128 GL000250.2 HAVANA gene 2017554 2020927 2045.0 - 0 ENSG00000228854.8 protein_coding NRM 2 OTTHUMG00000148758.1 +129 GL000250.2 HAVANA gene 2026311 2027040 730.0 - 0 ENSG00000236100.1 processed_pseudogene RPL7P4 2 OTTHUMG00000148756.1 +130 GL000250.2 HAVANA gene 2032572 2042688 738.0 + 0 ENSG00000231860.1 processed_transcript MDC1-AS1 2 OTTHUMG00000148749.1 +131 GL000250.2 HAVANA gene 2029312 2047393 8064.0 - 0 ENSG00000234012.9 protein_coding MDC1 2 OTTHUMG00000148757.2 +132 GL000250.2 HAVANA gene 2049704 2054929 3359.0 + 0 ENSG00000224156.10 protein_coding TUBB 2 OTTHUMG00000148754.1 +133 GL000250.2 HAVANA gene 2057212 2060006 678.0 - 0 ENSG00000223654.3 protein_coding FLOT1 2 OTTHUMG00000148753.2 +134 GL000250.2 HAVANA gene 2214729 2218933 945.0 + 0 ENSG00000229767.9 protein_coding DDR1 2 OTTHUMG00000148751.3 +135 GL000250.2 HAVANA gene 2313218 2319398 3793.0 + 0 ENSG00000231350.5 protein_coding MUC21 2 OTTHUMG00000148759.1 +136 GL000250.2 HAVANA gene 2359750 2364549 612.0 + 0 ENSG00000237108.1 processed_transcript CR759964.1 2 OTTHUMG00000148750.1 +137 GL000250.2 HAVANA gene 2386020 2392461 2212.0 + 0 ENSG00000228147.6 processed_transcript HCG22 2 OTTHUMG00000148760.2 +138 GL000250.2 ENSEMBL gene 2829257 2829358 102.0 - 0 ENSG00000266548.1 misc_RNA RF00019 3 +139 GL000250.2 HAVANA gene 2827449 2843674 2798.0 + 0 ENSG00000231179.9 protein_coding MICB 2 OTTHUMG00000148774.1 +140 GL000250.2 HAVANA gene 2852030 2852841 498.0 - 0 ENSG00000230616.4 processed_pseudogene PPIAP9 2 OTTHUMG00000148771.1 +141 GL000250.2 HAVANA gene 2860663 2861242 580.0 + 0 ENSG00000233965.1 processed_pseudogene RPL15P4 2 OTTHUMG00000148773.1 +142 GL000250.2 HAVANA gene 2861266 2862781 955.0 + 0 ENSG00000225228.2 protein_coding MCCD1 2 OTTHUMG00000148772.1 +143 GL000250.2 ENSEMBL gene 2868923 2868998 76.0 - 0 ENSG00000265849.1 snoRNA SNORD117 3 +144 GL000250.2 HAVANA gene 2862768 2871733 4790.0 - 0 ENSG00000237889.11 protein_coding DDX39B 2 OTTHUMG00000148789.4 ncRNA_host +145 GL000250.2 HAVANA gene 2909113 2910915 1315.0 + 0 ENSG00000228978.2 protein_coding TNF 2 OTTHUMG00000148782.2 +146 GL000250.2 HAVANA gene 2913134 2915101 926.0 - 0 ENSG00000231314.7 protein_coding LTB 2 OTTHUMG00000148787.1 +147 GL000250.2 HAVANA gene 2918703 2921488 2294.0 + 0 ENSG00000235915.8 protein_coding LST1 2 OTTHUMG00000148785.2 +148 GL000250.2 HAVANA gene 2921474 2925564 1212.0 - 0 ENSG00000236315.6 protein_coding NCR3 2 OTTHUMG00000148786.2 +149 GL000250.2 HAVANA gene 2943692 2943965 274.0 - 0 ENSG00000238126.1 processed_pseudogene UQCRHP1 2 OTTHUMG00000148783.1 +150 GL000250.2 ENSEMBL gene 3089563 3089665 103.0 - 0 ENSG00000266231.1 snRNA RF00026 3 +151 GL000250.2 HAVANA gene 3089204 3095756 3250.0 + 0 ENSG00000233345.9 protein_coding MSH5 2 OTTHUMG00000148848.5 overlapping_locus +152 GL000250.2 HAVANA gene 3095411 3097463 1557.0 + 0 ENSG00000227861.9 protein_coding SAPCD1 2 OTTHUMG00000148796.1 overlapping_locus +153 GL000250.2 HAVANA gene 3090777 3097463 3019.0 + 0 ENSG00000264619.6 protein_coding MSH5-SAPCD1 2 OTTHUMG00000179491.2 overlapping_locus +154 GL000250.2 HAVANA gene 3096922 3098200 461.0 - 0 ENSG00000236912.1 processed_transcript SAPCD1-AS1 2 OTTHUMG00000148797.1 +155 GL000250.2 HAVANA gene 3098202 3109905 3638.0 - 0 ENSG00000238203.8 protein_coding VWA7 2 OTTHUMG00000148784.1 +156 GL000250.2 ENSEMBL gene 3111428 3111516 89.0 - 0 ENSG00000264393.1 misc_RNA RF00019 3 +157 GL000250.2 HAVANA gene 3110129 3128564 6081.0 - 0 ENSG00000231116.9 protein_coding VARS 2 OTTHUMG00000148788.3 ncRNA_host +158 GL000250.2 HAVANA gene 3130007 3139596 1119.0 - 0 ENSG00000224979.6 protein_coding LSM2 2 OTTHUMG00000148799.1 +159 GL000250.2 HAVANA gene 3142241 3147687 2544.0 - 0 ENSG00000226704.6 protein_coding HSPA1L 2 OTTHUMG00000148803.1 +160 GL000250.2 HAVANA gene 3148086 3150568 2483.0 + 0 ENSG00000235941.5 protein_coding HSPA1A 2 OTTHUMG00000148802.1 +161 GL000250.2 HAVANA gene 3160360 3162874 2515.0 + 0 ENSG00000232804.5 protein_coding HSPA1B 2 OTTHUMG00000148800.2 +162 GL000250.2 ENSEMBL gene 3167878 3167940 63.0 + 0 ENSG00000263864.1 snoRNA SNORD48 3 +163 GL000250.2 ENSEMBL gene 3169692 3169758 67.0 + 0 ENSG00000266300.1 snoRNA SNORD52 3 +164 GL000250.2 HAVANA gene 3167223 3172381 1803.0 + 0 ENSG00000234728.9 protein_coding C6orf48 2 OTTHUMG00000148798.2 ncRNA_host +165 GL000250.2 HAVANA gene 3190275 3195522 4822.0 - 0 ENSG00000228691.6 protein_coding NEU1 2 OTTHUMG00000148801.2 +166 GL000250.2 HAVANA gene 3195808 3211661 3369.0 - 0 ENSG00000235336.8 protein_coding SLC44A4 2 OTTHUMG00000148804.1 +167 GL000250.2 HAVANA gene 3216376 3216669 223.0 + 0 ENSG00000232266.1 processed_transcript CR936237.1 2 OTTHUMG00000148805.1 +168 GL000250.2 HAVANA gene 3212374 3230309 7289.0 - 0 ENSG00000232045.7 protein_coding EHMT2 2 OTTHUMG00000148806.2 +169 GL000250.2 ENSEMBL gene 3411109 3411229 121.0 - 0 ENSG00000266653.1 rRNA RF00001 3 +170 GL000250.2 HAVANA gene 3406268 3418718 1902.0 - 0 ENSG00000229341.2 protein_coding TNXB 2 OTTHUMG00000148845.3 ncRNA_host +171 GL000250.2 HAVANA gene 3480957 3486972 4261.0 - 0 ENSG00000238056.9 protein_coding PRRT1 2 OTTHUMG00000148807.2 +172 GL000250.2 HAVANA gene 3497184 3500883 2622.0 + 0 ENSG00000240389.5 protein_coding EGFL8 2 OTTHUMG00000148809.4 overlapping_locus +173 GL000250.2 HAVANA gene 3486040 3504580 6991.0 + 0 ENSG00000236649.10 protein_coding PPT2 2 OTTHUMG00000148846.6 overlapping_locus +174 GL000250.2 HAVANA gene 3500814 3510698 3631.0 - 0 ENSG00000236873.9 protein_coding AGPAT1 2 OTTHUMG00000148814.1 +175 GL000250.2 HAVANA gene 3510956 3513395 1178.0 + 0 ENSG00000223767.5 protein_coding RNF5 2 OTTHUMG00000148808.1 +176 GL000250.2 HAVANA gene 3513570 3516926 2077.0 - 0 ENSG00000231268.9 protein_coding AGER 2 OTTHUMG00000148810.2 +177 GL000250.2 HAVANA gene 3517335 3522785 4349.0 - 0 ENSG00000225987.7 protein_coding PBX2 2 OTTHUMG00000148811.2 +178 GL000250.2 HAVANA gene 3523365 3528122 1854.0 - 0 ENSG00000237052.7 protein_coding GPSM3 2 OTTHUMG00000148812.2 overlapping_locus +179 GL000250.2 HAVANA gene 3527442 3536999 5658.0 - 0 ENSG00000238196.5 protein_coding NOTCH4 2 OTTHUMG00000148813.2 overlapping_locus +180 GL000250.2 HAVANA gene 3657809 3658768 960.0 + 0 ENSG00000234216.1 processed_pseudogene HNRNPA1P2 2 OTTHUMG00000148820.1 +181 GL000250.2 ENSEMBL gene 3685115 3685221 107.0 + 0 ENSG00000266435.1 snRNA RF00026 3 +182 GL000250.2 HAVANA gene 3648978 3704153 847.0 - 0 ENSG00000236672.6 protein_coding C6orf10 2 OTTHUMG00000148819.3 +183 GL000250.2 HAVANA gene 3722741 3725917 610.0 + 0 ENSG00000235135.1 processed_transcript HCG23 2 OTTHUMG00000148815.1 +184 GL000250.2 HAVANA gene 3726194 3739359 1470.0 - 0 ENSG00000226127.7 protein_coding BTNL2 2 OTTHUMG00000148816.3 +185 GL000250.2 HAVANA gene 3792063 3805744 343.0 - 0 ENSG00000227384.2 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000148817.1 +186 GL000250.2 ENSEMBL gene 3821941 3822089 149.0 - 0 ENSG00000264998.1 snRNA RF00003 3 +187 GL000250.2 HAVANA gene 3823889 3837634 1839.0 - 0 ENSG00000230463.2 protein_coding HLA-DRB3 2 OTTHUMG00000148818.2 +188 GL000250.2 HAVANA gene 4023853 4024683 445.0 + 0 ENSG00000237577.1 processed_transcript CR936921.1 2 OTTHUMG00000148821.1 +189 GL000250.2 HAVANA gene 4036579 4037516 357.0 - 0 ENSG00000226343.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000148823.1 +190 GL000250.2 HAVANA gene 4047520 4053351 1648.0 + 0 ENSG00000233192.7 protein_coding HLA-DQA2 2 OTTHUMG00000148822.2 +191 GL000250.2 HAVANA gene 4062237 4069674 2029.0 - 0 ENSG00000230675.9 protein_coding HLA-DQB2 2 OTTHUMG00000148825.2 +192 GL000250.2 HAVANA gene 4117787 4122072 1858.0 - 0 ENSG00000243612.5 protein_coding HLA-DOB 2 OTTHUMG00000148824.3 +193 GL000250.2 HAVANA gene 4126847 4143643 6212.0 - 0 ENSG00000225967.9 protein_coding TAP2 2 OTTHUMG00000148826.3 +194 GL000250.2 HAVANA gene 4145582 4149568 2006.0 - 0 ENSG00000230669.6 protein_coding PSMB8 2 OTTHUMG00000148827.1 +195 GL000250.2 HAVANA gene 4148951 4151360 1951.0 + 0 ENSG00000233089.6 processed_transcript PSMB8-AS1 2 OTTHUMG00000148828.1 overlapping_locus +196 GL000250.2 HAVANA gene 4150074 4158843 4576.0 - 0 ENSG00000227816.4 protein_coding TAP1 2 OTTHUMG00000148832.1 +197 GL000250.2 HAVANA gene 4149001 4184429 3321.0 + 0 ENSG00000242711.8 protein_coding PSMB9 2 OTTHUMG00000148833.4 overlapping_locus +198 GL000250.2 HAVANA gene 4184002 4184678 677.0 - 0 ENSG00000234642.8 transcribed_processed_pseudogene PPP1R2P1 2 OTTHUMG00000148831.1 +199 GL000250.2 HAVANA gene 4201238 4201312 75.0 + 0 ENSG00000237334.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000148830.1 +200 GL000250.2 HAVANA gene 4253460 4257972 2144.0 - 0 ENSG00000242361.7 protein_coding HLA-DMA 2 OTTHUMG00000148835.4 overlapping_locus +201 GL000250.2 HAVANA gene 4239474 4257972 4829.0 - 0 ENSG00000242092.8 protein_coding HLA-DMB 2 OTTHUMG00000148834.2 overlapping_locus +202 GL000250.2 HAVANA gene 4384119 4384528 410.0 + 0 ENSG00000231580.1 processed_pseudogene RPL32P1 2 OTTHUMG00000148837.1 overlapping_locus +203 GL000250.2 HAVANA gene 4369249 4385443 5748.0 - 0 ENSG00000235844.8 protein_coding HLA-DPA1 2 OTTHUMG00000148836.3 +204 GL000250.2 HAVANA gene 4380588 4391853 2791.0 + 0 ENSG00000236693.11 protein_coding HLA-DPB1 2 OTTHUMG00000148842.1 overlapping_locus +205 GL000250.2 HAVANA gene 4396405 4401947 733.0 - 0 ENSG00000234260.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000148840.1 +206 GL000250.2 HAVANA gene 4408419 4411955 676.0 - 0 ENSG00000227577.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000148838.1 +207 GL000250.2 HAVANA gene 4417076 4433705 1600.0 + 0 ENSG00000226071.9 transcribed_unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000148839.3 +208 GL000250.2 HAVANA gene 4435837 4435963 127.0 - 0 ENSG00000231895.1 unprocessed_pseudogene HLA-DPA3 2 OTTHUMG00000148841.1 +209 GL000250.2 HAVANA gene 4670202 4670897 696.0 - 0 ENSG00000217281.4 processed_pseudogene LYPLA2P1 2 OTTHUMG00000148829.1 +210 GL000251.2 ENSEMBL gene 654 5624 219.0 - 0 ENSG00000281185.1 protein_coding GPX6 3 +211 GL000251.2 ENSEMBL gene 15893 24832 1452.0 + 0 ENSG00000257770.5 protein_coding GPX5 3 +212 GL000251.2 HAVANA gene 63388 77211 3000.0 - 0 ENSG00000248496.3 protein_coding ZBED9 2 OTTHUMG00000031422.3 +213 GL000251.2 HAVANA gene 77254 81620 2873.0 + 0 ENSG00000275478.1 processed_transcript AL671879.1 2 OTTHUMG00000085163.1 +214 GL000251.2 HAVANA gene 138124 144356 664.0 - 0 ENSG00000249032.1 processed_transcript LINC00533 2 OTTHUMG00000031429.2 +215 GL000251.2 HAVANA gene 222690 223577 888.0 + 0 ENSG00000249814.1 processed_pseudogene RPSAP2 2 OTTHUMG00000031514.1 +216 GL000251.2 HAVANA gene 274331 274702 372.0 - 0 ENSG00000230574.1 processed_pseudogene NOP56P1 2 OTTHUMG00000031315.2 +217 GL000251.2 HAVANA gene 328388 329525 709.0 - 0 ENSG00000237006.1 processed_transcript AL669978.1 2 OTTHUMG00000085278.1 +218 GL000251.2 HAVANA gene 351928 352559 632.0 + 0 ENSG00000226714.1 processed_pseudogene RPL13P 2 OTTHUMG00000031543.2 +219 GL000251.2 HAVANA gene 350142 353890 2453.0 - 0 ENSG00000227966.1 processed_transcript LINC01623 2 OTTHUMG00000085279.1 +220 GL000251.2 HAVANA gene 379538 380612 1075.0 - 0 ENSG00000235184.1 processed_pseudogene ZNF90P2 2 OTTHUMG00000031540.2 +221 GL000251.2 HAVANA gene 387229 388019 411.0 + 0 ENSG00000230004.1 processed_transcript HCG14 2 OTTHUMG00000031579.1 +222 GL000251.2 ENSEMBL gene 406342 406441 100.0 + 0 ENSG00000263937.1 snRNA RF00026 3 +223 GL000251.2 HAVANA gene 393697 414688 7983.0 - 0 ENSG00000237071.7 protein_coding TRIM27 2 OTTHUMG00000031515.2 +224 GL000251.2 HAVANA gene 430282 430942 466.0 + 0 ENSG00000237634.1 protein_coding LINC01556 2 OTTHUMG00000031430.1 +225 GL000251.2 HAVANA gene 455539 456869 1331.0 - 0 ENSG00000233505.1 processed_pseudogene KRT18P1 2 OTTHUMG00000031506.2 +226 GL000251.2 ENSEMBL gene 463949 464247 299.0 + 0 ENSG00000263419.2 misc_RNA RF00017 3 +227 GL000251.2 HAVANA gene 472676 473957 1032.0 + 0 ENSG00000227380.2 processed_transcript HCG15 2 OTTHUMG00000031565.1 overlapping_locus +228 GL000251.2 HAVANA gene 473273 475009 317.0 + 0 ENSG00000239940.1 processed_transcript AL662865.1 2 OTTHUMG00000031568.1 overlapping_locus +229 GL000251.2 HAVANA gene 481256 491796 3175.0 - 0 ENSG00000223687.4 protein_coding ZNF311 2 OTTHUMG00000031590.2 +230 GL000251.2 HAVANA gene 513167 514094 928.0 - 0 ENSG00000227626.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000031560.1 +231 GL000251.2 HAVANA gene 530701 531728 1028.0 - 0 ENSG00000234101.1 protein_coding OR2W1 2 OTTHUMG00000031318.4 +232 GL000251.2 HAVANA gene 558310 559082 773.0 - 0 ENSG00000225838.1 unprocessed_pseudogene OR2P1P 2 OTTHUMG00000031312.2 +233 GL000251.2 ENSEMBL gene 550474 563010 414.0 + 0 ENSG00000274063.1 protein_coding AL662852.3 3 +234 GL000251.2 HAVANA gene 563059 563654 596.0 - 0 ENSG00000226657.1 processed_pseudogene SAR1AP1 2 OTTHUMG00000031577.2 +235 GL000251.2 HAVANA gene 572851 573857 1007.0 - 0 ENSG00000233180.3 protein_coding OR2B3 2 OTTHUMG00000031526.4 +236 GL000251.2 HAVANA gene 587489 588427 939.0 + 0 ENSG00000234804.1 unprocessed_pseudogene OR2J1 2 OTTHUMG00000031578.1 +237 GL000251.2 HAVANA gene 598439 599374 936.0 + 0 ENSG00000232178.1 protein_coding OR2J3 2 OTTHUMG00000031362.2 +238 GL000251.2 HAVANA gene 610759 615455 389.0 + 0 ENSG00000232272.1 processed_transcript AL662852.2 2 OTTHUMG00000085771.1 +239 GL000251.2 HAVANA gene 624424 625360 937.0 - 0 ENSG00000224925.2 unprocessed_pseudogene AL662852.1 2 OTTHUMG00000031524.1 +240 GL000251.2 HAVANA gene 659846 661117 1272.0 + 0 ENSG00000231676.4 protein_coding OR2J2 2 OTTHUMG00000031361.4 +241 GL000251.2 HAVANA gene 668072 669007 936.0 + 0 ENSG00000226610.1 unprocessed_pseudogene OR2J4P 2 OTTHUMG00000031332.1 +242 GL000251.2 HAVANA gene 701808 702745 938.0 + 0 ENSG00000234092.1 unprocessed_pseudogene AL662857.3 2 OTTHUMG00000031533.2 +243 GL000251.2 HAVANA gene 715793 716723 931.0 - 0 ENSG00000225150.1 unprocessed_pseudogene OR2G1P 2 OTTHUMG00000031395.2 +244 GL000251.2 HAVANA gene 749271 750647 879.0 - 0 ENSG00000237366.1 unprocessed_pseudogene OR2U1P 2 OTTHUMG00000031310.3 +245 GL000251.2 HAVANA gene 710539 753653 464.0 + 0 ENSG00000233950.1 processed_transcript AL662857.2 2 OTTHUMG00000085770.1 +246 GL000251.2 HAVANA gene 755030 755989 960.0 - 0 ENSG00000226844.1 unprocessed_pseudogene OR2U2P 2 OTTHUMG00000031325.1 +247 GL000251.2 HAVANA gene 777300 778242 943.0 + 0 ENSG00000231279.2 unprocessed_pseudogene AL662857.1 2 OTTHUMG00000031494.1 +248 GL000251.2 HAVANA gene 793280 794245 966.0 + 0 ENSG00000225291.4 protein_coding OR14J1 2 OTTHUMG00000031484.2 +249 GL000251.2 HAVANA gene 816218 817652 1435.0 - 0 ENSG00000229045.1 processed_pseudogene DDX6P1 2 OTTHUMG00000031591.2 +250 GL000251.2 HAVANA gene 883016 884084 1069.0 + 0 ENSG00000235966.4 protein_coding OR12D2 2 OTTHUMG00000031319.3 +251 GL000251.2 HAVANA gene 903731 904677 852.0 + 0 ENSG00000249030.1 unprocessed_pseudogene OR12D1 2 OTTHUMG00000031421.2 +252 GL000251.2 HAVANA gene 841820 918416 1335.0 - 0 ENSG00000233046.8 protein_coding OR5V1 2 OTTHUMG00000031500.3 overlapping_locus +253 GL000251.2 HAVANA gene 925755 927426 1672.0 + 0 ENSG00000224234.5 protein_coding OR10C1 2 OTTHUMG00000031508.4 +254 GL000251.2 HAVANA gene 860028 936549 2011.0 - 0 ENSG00000251394.6 protein_coding OR12D3 2 OTTHUMG00000031321.2 overlapping_locus +255 GL000251.2 HAVANA gene 911953 943524 2864.0 - 0 ENSG00000230780.8 protein_coding OR11A1 2 OTTHUMG00000031525.2 overlapping_locus +256 GL000251.2 HAVANA gene 943634 950780 3708.0 + 0 ENSG00000235132.8 protein_coding OR2H1 2 OTTHUMG00000031320.3 +257 GL000251.2 HAVANA gene 951048 956260 382.0 - 0 ENSG00000227228.1 unprocessed_pseudogene UBDP1 2 OTTHUMG00000031556.2 +258 GL000251.2 HAVANA gene 961477 962523 1047.0 - 0 ENSG00000224444.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000086848.1 +259 GL000251.2 HAVANA gene 973218 974354 1137.0 - 0 ENSG00000233141.3 protein_coding MAS1L 2 OTTHUMG00000031359.2 +260 GL000251.2 HAVANA gene 975723 976128 406.0 - 0 ENSG00000232302.3 processed_pseudogene RPS17P1 2 OTTHUMG00000031356.2 +261 GL000251.2 HAVANA gene 983961 997008 877.0 + 0 ENSG00000232652.1 processed_transcript AL662869.1 2 OTTHUMG00000086849.1 +262 GL000251.2 HAVANA gene 1015883 1020031 2777.0 + 0 ENSG00000230674.5 processed_transcript LINC01015 2 OTTHUMG00000066098.2 +263 GL000251.2 HAVANA gene 1024167 1025250 1084.0 - 0 ENSG00000237698.1 processed_pseudogene GPR53P 2 OTTHUMG00000031406.2 +264 GL000251.2 HAVANA gene 1039700 1040647 948.0 + 0 ENSG00000229467.2 unprocessed_pseudogene OR2I1P 2 OTTHUMG00000031530.2 +265 GL000251.2 HAVANA gene 1042093 1046406 990.0 - 0 ENSG00000228913.2 protein_coding UBD 2 OTTHUMG00000031587.2 overlapping_locus +266 GL000251.2 HAVANA gene 1060389 1061316 928.0 + 0 ENSG00000226796.2 unprocessed_pseudogene OR2H5P 2 OTTHUMG00000031559.1 +267 GL000251.2 HAVANA gene 1063939 1064228 290.0 + 0 ENSG00000225248.2 processed_pseudogene TMEM183AP1 2 OTTHUMG00000125535.1 +268 GL000251.2 ENSEMBL gene 1068729 1068812 84.0 + 0 ENSG00000266672.1 snoRNA SNORD32B 3 +269 GL000251.2 HAVANA gene 1068988 1069505 518.0 + 0 ENSG00000230181.1 processed_pseudogene RPL13AP 2 OTTHUMG00000031309.1 +270 GL000251.2 HAVANA gene 1073935 1075518 1584.0 + 0 ENSG00000229185.4 protein_coding OR2H2 2 OTTHUMG00000031322.2 +271 GL000251.2 HAVANA gene 1042093 1119641 7011.0 - 0 ENSG00000232632.8 protein_coding GABBR1 2 OTTHUMG00000031365.3 overlapping_locus +272 GL000251.2 HAVANA gene 1122536 1122819 284.0 - 0 ENSG00000223771.3 processed_pseudogene SUMO2P1 2 OTTHUMG00000031420.1 +273 GL000251.2 HAVANA gene 1143453 1158845 3062.0 + 0 ENSG00000237834.9 protein_coding MOG 2 OTTHUMG00000031380.5 +274 GL000251.2 HAVANA gene 1158865 1167618 2149.0 - 0 ENSG00000226858.7 protein_coding ZFP57 2 OTTHUMG00000031440.4 +275 GL000251.2 HAVANA gene 1194638 1195060 423.0 - 0 ENSG00000235507.1 processed_pseudogene ZDHHC20P1 2 OTTHUMG00000125553.1 +276 GL000251.2 HAVANA gene 1206841 1207831 991.0 - 0 ENSG00000233935.1 unprocessed_pseudogene AL669813.2 2 OTTHUMG00000130223.1 +277 GL000251.2 HAVANA gene 1210525 1210995 471.0 - 0 ENSG00000241880.1 transcribed_processed_pseudogene RPL23AP1 2 OTTHUMG00000031379.2 overlapping_locus +278 GL000251.2 HAVANA gene 1206635 1222378 4340.0 + 0 ENSG00000137403.19 protein_coding HLA-F 2 OTTHUMG00000031438.4 +279 GL000251.2 HAVANA gene 1232135 1232359 225.0 + 0 ENSG00000224253.1 unprocessed_pseudogene AL669813.1 2 OTTHUMG00000031441.2 +280 GL000251.2 HAVANA gene 1225576 1232815 1159.0 - 0 ENSG00000251581.1 transcribed_unprocessed_pseudogene MICE 2 OTTHUMG00000031354.2 overlapping_locus +281 GL000251.2 HAVANA gene 1210457 1232895 4190.0 - 0 ENSG00000206446.9 processed_transcript HLA-F-AS1 2 OTTHUMG00000057543.3 overlapping_locus +282 GL000251.2 ENSEMBL gene 1234216 1234317 102.0 + 0 ENSG00000263876.1 misc_RNA RF00019 3 +283 GL000251.2 HAVANA gene 1234572 1234992 421.0 - 0 ENSG00000228912.2 processed_pseudogene IFITM4P 2 OTTHUMG00000031378.1 +284 GL000251.2 HAVANA gene 1275536 1276510 975.0 - 0 ENSG00000225346.1 unprocessed_pseudogene HCG4 2 OTTHUMG00000036089.4 +285 GL000251.2 HAVANA gene 1275135 1281358 5381.0 + 0 ENSG00000230238.7 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000031575.6 +286 GL000251.2 HAVANA gene 1283988 1285997 747.0 + 0 ENSG00000260055.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172778.1 +287 GL000251.2 HAVANA gene 1286767 1287563 797.0 - 0 ENSG00000233462.4 processed_pseudogene RPL7AP7 2 OTTHUMG00000031595.2 +288 GL000251.2 HAVANA gene 1296135 1296266 132.0 - 0 ENSG00000229995.1 processed_pseudogene MICG 2 OTTHUMG00000031357.3 +289 GL000251.2 HAVANA gene 1310947 1311927 981.0 - 0 ENSG00000234681.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000130918.1 +290 GL000251.2 HAVANA gene 1310529 1314698 1833.0 + 0 ENSG00000230413.9 protein_coding HLA-G 2 OTTHUMG00000031439.6 +291 GL000251.2 HAVANA gene 1339420 1339569 150.0 - 0 ENSG00000224118.1 unprocessed_pseudogene AL671561.1 2 OTTHUMG00000031355.2 +292 GL000251.2 HAVANA gene 1368709 1369675 967.0 - 0 ENSG00000226152.1 unprocessed_pseudogene AL671561.2 2 OTTHUMG00000130919.1 +293 GL000251.2 HAVANA gene 1369165 1371887 1088.0 + 0 ENSG00000226893.3 unprocessed_pseudogene HLA-H 2 OTTHUMG00000031442.1 +294 GL000251.2 HAVANA gene 1377961 1379092 450.0 + 0 ENSG00000227027.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000031532.2 +295 GL000251.2 HAVANA gene 1387926 1388292 192.0 + 0 ENSG00000233241.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000131005.1 +296 GL000251.2 HAVANA gene 1389165 1390029 330.0 - 0 ENSG00000231998.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000131000.1 +297 GL000251.2 HAVANA gene 1407336 1408326 991.0 - 0 ENSG00000227956.2 unprocessed_pseudogene HCG4B 2 OTTHUMG00000031487.2 +298 GL000251.2 HAVANA gene 1407810 1410587 1037.0 + 0 ENSG00000232331.2 unprocessed_pseudogene HLA-K 2 OTTHUMG00000031444.2 +299 GL000251.2 HAVANA gene 1413698 1413883 186.0 + 0 ENSG00000223352.1 unprocessed_pseudogene HLA-U 2 OTTHUMG00000031545.2 +300 GL000251.2 HAVANA gene 1421497 1422489 993.0 - 0 ENSG00000223708.1 unprocessed_pseudogene AL645935.1 2 OTTHUMG00000131004.1 +301 GL000251.2 HAVANA gene 1435984 1437958 771.0 + 0 ENSG00000232011.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000031542.3 +302 GL000251.2 HAVANA gene 1450190 1451852 813.0 - 0 ENSG00000237395.1 unprocessed_pseudogene MICD 2 OTTHUMG00000031352.2 +303 GL000251.2 HAVANA gene 1454489 1457785 660.0 + 0 ENSG00000236579.2 processed_transcript HCG9 2 OTTHUMG00000031399.2 +304 GL000251.2 HAVANA gene 1472597 1472993 258.0 + 0 ENSG00000234242.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000131001.1 +305 GL000251.2 HAVANA gene 1473825 1474702 335.0 - 0 ENSG00000235340.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000130999.1 +306 GL000251.2 HAVANA gene 1485506 1486509 1004.0 - 0 ENSG00000224006.1 unprocessed_pseudogene AL645935.2 2 OTTHUMG00000131003.1 overlapping_locus +307 GL000251.2 HAVANA gene 1485968 1489341 1634.0 + 0 ENSG00000228220.7 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000031443.2 +308 GL000251.2 HAVANA gene 1369022 1489345 7498.0 + 0 ENSG00000224320.9 protein_coding HLA-A 2 OTTHUMG00000031434.2 +309 GL000251.2 HAVANA gene 1511448 1512738 984.0 + 0 ENSG00000232141.1 processed_pseudogene ETF1P1 2 OTTHUMG00000031445.2 +310 GL000251.2 ENSEMBL gene 1515651 1515718 68.0 + 0 ENSG00000276049.1 misc_RNA RF02218 3 +311 GL000251.2 ENSEMBL gene 1537892 1537967 76.0 + 0 ENSG00000274071.1 misc_RNA RF02219 3 +312 GL000251.2 ENSEMBL gene 1540857 1540960 104.0 + 0 ENSG00000276034.1 misc_RNA RF02220 3 +313 GL000251.2 HAVANA gene 1480399 1541417 19549.0 - 0 ENSG00000229653.6 processed_transcript ZNRD1ASP 2 OTTHUMG00000031389.3 overlapping_locus +314 GL000251.2 HAVANA gene 1538676 1544680 3672.0 + 0 ENSG00000224859.6 protein_coding ZNRD1 2 OTTHUMG00000031431.3 ncRNA_host +315 GL000251.2 HAVANA gene 1546480 1550104 2538.0 + 0 ENSG00000234058.6 protein_coding PPP1R11 2 OTTHUMG00000031558.4 +316 GL000251.2 HAVANA gene 1550037 1555658 2206.0 - 0 ENSG00000227171.8 protein_coding RNF39 2 OTTHUMG00000031586.2 +317 GL000251.2 HAVANA gene 1582690 1592905 3537.0 - 0 ENSG00000226402.8 protein_coding TRIM31 2 OTTHUMG00000031334.3 +318 GL000251.2 HAVANA gene 1585033 1594523 549.0 + 0 ENSG00000238027.1 processed_transcript TRIM31-AS1 2 OTTHUMG00000131063.1 +319 GL000251.2 ENSEMBL gene 1612611 1612770 160.0 - 0 ENSG00000265495.1 snoRNA RF00554 3 +320 GL000251.2 HAVANA gene 1615913 1628543 2497.0 + 0 ENSG00000228001.8 protein_coding TRIM40 2 OTTHUMG00000031353.2 +321 GL000251.2 HAVANA gene 1631753 1640740 3546.0 - 0 ENSG00000237192.8 protein_coding TRIM10 2 OTTHUMG00000031593.2 +322 GL000251.2 HAVANA gene 1643004 1652494 2515.0 + 0 ENSG00000227147.9 protein_coding TRIM15 2 OTTHUMG00000031301.3 +323 GL000251.2 HAVANA gene 1666578 1668398 1203.0 - 0 ENSG00000228199.1 processed_pseudogene PAIP1P1 2 OTTHUMG00000034811.2 overlapping_locus +324 GL000251.2 HAVANA gene 1664235 1693198 4378.0 - 0 ENSG00000230230.7 protein_coding TRIM26 2 OTTHUMG00000031311.5 overlapping_locus +325 GL000251.2 HAVANA gene 1718054 1722043 768.0 + 0 ENSG00000223840.1 unprocessed_pseudogene TRIM26BP 2 OTTHUMG00000031581.2 +326 GL000251.2 HAVANA gene 1739364 1746646 4774.0 + 0 ENSG00000243492.6 transcribed_unprocessed_pseudogene HLA-L 2 OTTHUMG00000031446.2 +327 GL000251.2 HAVANA gene 1713805 1805811 759.0 - 0 ENSG00000241701.5 processed_transcript HCG17 2 OTTHUMG00000031394.2 overlapping_locus +328 GL000251.2 HAVANA gene 1770488 1806827 5633.0 - 0 ENSG00000228894.6 processed_transcript HCG18 2 OTTHUMG00000031418.5 overlapping_locus +329 GL000251.2 HAVANA gene 1806156 1823410 4226.0 + 0 ENSG00000224994.10 protein_coding TRIM39 2 OTTHUMG00000031336.4 +330 GL000251.2 HAVANA gene 1808989 1826565 2717.0 + 0 ENSG00000241863.6 protein_coding RPP21 2 OTTHUMG00000031520.3 +331 GL000251.2 HAVANA gene 1831097 1831231 135.0 + 0 ENSG00000227334.1 unprocessed_pseudogene HLA-N 2 OTTHUMG00000031449.2 +332 GL000251.2 HAVANA gene 1838958 1839591 634.0 - 0 ENSG00000234417.1 processed_pseudogene AL662831.1 2 OTTHUMG00000031327.3 +333 GL000251.2 HAVANA gene 1842802 1843970 1169.0 - 0 ENSG00000232095.1 processed_pseudogene UBQLN1P1 2 OTTHUMG00000031414.2 +334 GL000251.2 HAVANA gene 1894398 1899003 1055.0 + 0 ENSG00000233466.1 unprocessed_pseudogene MICC 2 OTTHUMG00000031348.3 +335 GL000251.2 HAVANA gene 1946252 1947779 1267.0 + 0 ENSG00000223933.1 processed_pseudogene TMPOP1 2 OTTHUMG00000031518.2 +336 GL000251.2 HAVANA gene 1948620 1949989 1370.0 + 0 ENSG00000223412.3 processed_pseudogene SUCLA2P1 2 OTTHUMG00000031426.2 +337 GL000251.2 HAVANA gene 1965676 1966326 651.0 + 0 ENSG00000227703.4 processed_pseudogene RANP1 2 OTTHUMG00000031423.1 +338 GL000251.2 HAVANA gene 1969202 1973940 2975.0 + 0 ENSG00000233904.6 protein_coding HLA-E 2 OTTHUMG00000031437.3 +339 GL000251.2 HAVANA gene 1995989 1998943 851.0 + 0 ENSG00000223827.1 processed_transcript LINC02569 2 OTTHUMG00000132955.1 +340 GL000251.2 HAVANA gene 2021096 2036894 8646.0 - 0 ENSG00000235986.9 protein_coding GNL1 2 OTTHUMG00000031417.4 +341 GL000251.2 HAVANA gene 2036606 2043443 4281.0 + 0 ENSG00000228186.10 protein_coding PRR3 2 OTTHUMG00000031307.3 +342 GL000251.2 HAVANA gene 2051098 2076903 4340.0 + 0 ENSG00000236149.9 protein_coding ABCF1 2 OTTHUMG00000031364.3 +343 GL000251.2 HAVANA gene 2080124 2098336 5215.0 - 0 ENSG00000230995.7 protein_coding PPP1R10 2 OTTHUMG00000031557.3 +344 GL000251.2 HAVANA gene 2097433 2106119 1888.0 + 0 ENSG00000227420.8 protein_coding MRPS18B 2 OTTHUMG00000031566.3 +345 GL000251.2 HAVANA gene 2113355 2113621 267.0 + 0 ENSG00000225453.4 processed_pseudogene PTMAP1 2 OTTHUMG00000031535.3 overlapping_locus +346 GL000251.2 HAVANA gene 2106566 2126545 4035.0 + 0 ENSG00000223752.8 protein_coding ATAT1 2 OTTHUMG00000031519.3 overlapping_locus +347 GL000251.2 HAVANA gene 2126761 2132823 1863.0 + 0 ENSG00000233641.9 protein_coding C6orf136 2 OTTHUMG00000031521.4 +348 GL000251.2 HAVANA gene 2132833 2152781 4008.0 - 0 ENSG00000233561.6 protein_coding DHX16 2 OTTHUMG00000031330.4 +349 GL000251.2 HAVANA gene 2156133 2167639 4599.0 - 0 ENSG00000231247.8 protein_coding PPP1R18 2 OTTHUMG00000031537.3 +350 GL000251.2 HAVANA gene 2167791 2171164 2045.0 - 0 ENSG00000235773.8 protein_coding NRM 2 OTTHUMG00000031523.3 +351 GL000251.2 HAVANA gene 2176548 2177277 730.0 - 0 ENSG00000235342.1 processed_pseudogene RPL7P4 2 OTTHUMG00000031554.2 +352 GL000251.2 HAVANA gene 2182808 2192924 738.0 + 0 ENSG00000236766.1 processed_transcript MDC1-AS1 2 OTTHUMG00000133708.1 +353 GL000251.2 HAVANA gene 2179547 2197629 8064.0 - 0 ENSG00000224587.9 protein_coding MDC1 2 OTTHUMG00000031345.5 +354 GL000251.2 HAVANA gene 2199940 2205165 3359.0 + 0 ENSG00000227739.10 protein_coding TUBB 2 OTTHUMG00000031329.3 +355 GL000251.2 ENSEMBL gene 2216039 2216149 111.0 - 0 ENSG00000266119.1 misc_RNA RF00019 3 +356 GL000251.2 HAVANA gene 2207446 2222473 3186.0 - 0 ENSG00000232280.9 protein_coding FLOT1 2 OTTHUMG00000031433.5 ncRNA_host +357 GL000251.2 HAVANA gene 2222939 2224294 1356.0 - 0 ENSG00000237155.3 protein_coding IER3 2 OTTHUMG00000031563.2 +358 GL000251.2 ENSEMBL gene 2230744 2230995 252.0 + 0 ENSG00000263728.2 misc_RNA RF00017 3 +359 GL000251.2 HAVANA gene 2246539 2271967 1369.0 + 0 ENSG00000224641.5 processed_transcript HCG20 2 OTTHUMG00000031492.2 +360 GL000251.2 HAVANA gene 2278378 2310390 2171.0 - 0 ENSG00000236006.5 processed_transcript AL662848.1 2 OTTHUMG00000031539.2 +361 GL000251.2 HAVANA gene 2319260 2327898 795.0 - 0 ENSG00000231522.1 processed_transcript LINC02570 2 OTTHUMG00000133711.1 +362 GL000251.2 ENSEMBL gene 2343998 2344300 303.0 + 0 ENSG00000265903.1 misc_RNA RF00100 3 +363 GL000251.2 HAVANA gene 2346729 2355691 3991.0 - 0 ENSG00000224360.1 processed_transcript DDR1-DT 2 OTTHUMG00000031529.3 +364 GL000251.2 HAVANA gene 2360744 2379927 5689.0 + 0 ENSG00000137332.19 protein_coding DDR1 2 OTTHUMG00000031536.6 +365 GL000251.2 HAVANA gene 2387930 2393852 2353.0 + 0 ENSG00000236895.10 protein_coding GTF2H4 2 OTTHUMG00000031313.4 overlapping_locus +366 GL000251.2 ENSEMBL gene 2393951 2406054 4070.0 + 0 ENSG00000285224.1 protein_coding VARS2 3 +367 GL000251.2 HAVANA gene 2387988 2406057 8422.0 + 0 ENSG00000236178.10 protein_coding VARS2 2 OTTHUMG00000031561.4 overlapping_locus +368 GL000251.2 HAVANA gene 2410947 2411769 691.0 - 0 ENSG00000224246.2 protein_coding SFTA2 2 OTTHUMG00000031483.3 +369 GL000251.2 ENSEMBL gene 2412213 2412301 89.0 - 0 ENSG00000266178.1 misc_RNA RF00019 3 +370 GL000251.2 HAVANA gene 2420584 2433795 3573.0 + 0 ENSG00000232308.4 protein_coding MUCL3 2 OTTHUMG00000031385.2 +371 GL000251.2 HAVANA gene 2425554 2434436 605.0 - 0 ENSG00000223454.1 processed_transcript HCG21 2 OTTHUMG00000031482.1 +372 GL000251.2 HAVANA gene 2463289 2469484 3793.0 + 0 ENSG00000234137.5 protein_coding MUC21 2 OTTHUMG00000031516.3 +373 GL000251.2 HAVANA gene 2490065 2515096 6019.0 + 0 ENSG00000234063.5 processed_transcript AL663093.1 2 OTTHUMG00000133710.1 +374 GL000251.2 HAVANA gene 2535827 2542268 2184.0 + 0 ENSG00000238234.6 transcribed_unprocessed_pseudogene HCG22 2 OTTHUMG00000031470.6 +375 GL000251.2 ENSEMBL gene 2565385 2565484 100.0 + 0 ENSG00000265921.1 snRNA RF00026 3 +376 GL000251.2 HAVANA gene 2593598 2594934 1140.0 - 0 ENSG00000229432.2 protein_coding C6orf15 2 OTTHUMG00000031391.2 +377 GL000251.2 HAVANA gene 2597465 2602822 2549.0 - 0 ENSG00000137197.6 protein_coding CDSN 2 OTTHUMG00000031432.2 +378 GL000251.2 HAVANA gene 2619927 2621743 1152.0 - 0 ENSG00000224544.2 protein_coding PSORS1C2 2 OTTHUMG00000031351.2 +379 GL000251.2 HAVANA gene 2597125 2622431 4627.0 + 0 ENSG00000235487.8 protein_coding PSORS1C1 2 OTTHUMG00000031347.4 +380 GL000251.2 HAVANA gene 2623117 2623303 187.0 + 0 ENSG00000226993.1 processed_pseudogene POLR2LP1 2 OTTHUMG00000031549.2 +381 GL000251.2 HAVANA gene 2624870 2640641 4556.0 - 0 ENSG00000234114.8 protein_coding CCHCR1 2 OTTHUMG00000149972.4 +382 GL000251.2 HAVANA gene 2640970 2646639 3291.0 + 0 ENSG00000224379.6 protein_coding TCF19 2 OTTHUMG00000031572.3 +383 GL000251.2 HAVANA gene 2646761 2653135 1880.0 - 0 ENSG00000233911.9 protein_coding POU5F1 2 OTTHUMG00000031507.4 +384 GL000251.2 HAVANA gene 2656176 2660341 593.0 - 0 ENSG00000223364.1 processed_transcript PSORS1C3 2 OTTHUMG00000031324.4 +385 GL000251.2 HAVANA gene 2682609 2684361 516.0 - 0 ENSG00000228583.1 processed_transcript AL662833.2 2 OTTHUMG00000133715.1 +386 GL000251.2 HAVANA gene 2680204 2686408 1804.0 + 0 ENSG00000232758.1 processed_transcript HCG27 2 OTTHUMG00000031548.3 +387 GL000251.2 HAVANA gene 2749675 2753056 2576.0 - 0 ENSG00000233841.11 protein_coding HLA-C 2 OTTHUMG00000031436.7 +388 GL000251.2 HAVANA gene 2756493 2759664 3172.0 + 0 ENSG00000233486.3 processed_pseudogene USP8P1 2 OTTHUMG00000031317.2 +389 GL000251.2 HAVANA gene 2761227 2762429 1203.0 + 0 ENSG00000228461.1 processed_pseudogene RPL3P2 2 OTTHUMG00000031305.2 +390 GL000251.2 HAVANA gene 2768421 2769875 1455.0 - 0 ENSG00000231433.1 processed_pseudogene WASF5P 2 OTTHUMG00000031564.2 +391 GL000251.2 HAVANA gene 2788725 2789459 306.0 - 0 ENSG00000225939.1 unprocessed_pseudogene AL662833.1 2 OTTHUMG00000133755.1 +392 GL000251.2 HAVANA gene 2750417 2837604 2743.0 - 0 ENSG00000223532.10 protein_coding HLA-B 2 OTTHUMG00000031435.5 +393 GL000251.2 HAVANA gene 2846706 2847252 547.0 - 0 ENSG00000230016.1 processed_pseudogene DHFRP2 2 OTTHUMG00000031393.2 +394 GL000251.2 ENSEMBL gene 2850470 2850576 107.0 + 0 ENSG00000264185.1 snRNA RF00026 3 +395 GL000251.2 HAVANA gene 2857747 2858349 603.0 + 0 ENSG00000223971.1 processed_pseudogene AL669854.1 2 OTTHUMG00000031534.2 +396 GL000251.2 HAVANA gene 2860752 2861178 427.0 + 0 ENSG00000232659.1 processed_pseudogene ZDHHC20P2 2 OTTHUMG00000133762.1 +397 GL000251.2 HAVANA gene 2862422 2862636 53.0 - 0 ENSG00000225145.1 unprocessed_pseudogene HLA-S 2 OTTHUMG00000031469.2 +398 GL000251.2 ENSEMBL gene 2882522 2882620 99.0 - 0 ENSG00000264692.1 misc_RNA RF00019 3 +399 GL000251.2 HAVANA gene 2880151 2896610 3853.0 + 0 ENSG00000233051.9 protein_coding MICA 2 OTTHUMG00000031343.4 +400 GL000251.2 HAVANA gene 2921972 2927272 2138.0 + 0 ENSG00000234858.1 processed_transcript LINC01149 2 OTTHUMG00000133761.1 +401 GL000251.2 HAVANA gene 2940500 2943134 2544.0 + 0 ENSG00000237105.2 processed_transcript HCP5 2 OTTHUMG00000031580.2 +402 GL000251.2 ENSEMBL gene 2974031 2974132 102.0 - 0 ENSG00000264846.1 misc_RNA RF00019 3 +403 GL000251.2 HAVANA gene 2975426 2988464 2681.0 + 0 ENSG00000234218.9 protein_coding MICB 2 OTTHUMG00000031344.3 +404 GL000251.2 HAVANA gene 2996824 2997635 498.0 - 0 ENSG00000236415.4 processed_pseudogene PPIAP9 2 OTTHUMG00000031589.2 +405 GL000251.2 HAVANA gene 3005447 3006026 580.0 + 0 ENSG00000230211.1 processed_pseudogene RPL15P4 2 OTTHUMG00000031402.2 +406 GL000251.2 HAVANA gene 3006050 3007565 955.0 + 0 ENSG00000226923.2 protein_coding MCCD1 2 OTTHUMG00000134330.1 +407 GL000251.2 ENSEMBL gene 3013707 3013782 76.0 - 0 ENSG00000263359.1 snoRNA SNORD117 3 +408 GL000251.2 ENSEMBL gene 3018431 3018508 78.0 - 0 ENSG00000265607.1 snoRNA SNORD84 3 +409 GL000251.2 HAVANA gene 3019634 3020468 527.0 + 0 ENSG00000232256.1 processed_transcript DDX39B-AS1 2 OTTHUMG00000134329.1 +410 GL000251.2 HAVANA gene 3007552 3023908 6891.0 - 0 ENSG00000225073.10 protein_coding DDX39B 2 OTTHUMG00000031447.6 ncRNA_host,overlapping_locus +411 GL000251.2 HAVANA gene 3021792 3024174 1652.0 - 0 ENSG00000227587.2 protein_coding ATP6V1G2 2 OTTHUMG00000031501.3 overlapping_locus +412 GL000251.2 HAVANA gene 3024196 3036142 1779.0 + 0 ENSG00000234530.8 protein_coding NFKBIL1 2 OTTHUMG00000031308.5 +413 GL000251.2 HAVANA gene 3049341 3051611 1737.0 + 0 ENSG00000238130.8 protein_coding LTA 2 OTTHUMG00000031415.3 +414 GL000251.2 HAVANA gene 3052854 3055623 1676.0 + 0 ENSG00000204490.3 protein_coding TNF 2 OTTHUMG00000031493.2 +415 GL000251.2 HAVANA gene 3057842 3059809 926.0 - 0 ENSG00000204487.8 protein_coding LTB 2 OTTHUMG00000031416.3 +416 GL000251.2 HAVANA gene 3063411 3066192 2290.0 + 0 ENSG00000226182.8 protein_coding LST1 2 OTTHUMG00000031562.4 +417 GL000251.2 HAVANA gene 3066178 3070268 1211.0 - 0 ENSG00000237808.6 protein_coding NCR3 2 OTTHUMG00000031403.4 +418 GL000251.2 HAVANA gene 3088372 3088645 274.0 - 0 ENSG00000227650.1 processed_pseudogene UQCRHP1 2 OTTHUMG00000031588.3 +419 GL000251.2 HAVANA gene 3092473 3094310 1320.0 + 0 ENSG00000237727.7 protein_coding AIF1 2 OTTHUMG00000031546.3 +420 GL000251.2 ENSEMBL gene 3100364 3100495 132.0 + 0 ENSG00000263879.1 snoRNA SNORA38 3 +421 GL000251.2 HAVANA gene 3098008 3115058 9115.0 + 0 ENSG00000225164.9 protein_coding PRRC2A 2 OTTHUMG00000031450.3 ncRNA_host +422 GL000251.2 HAVANA gene 3116310 3129995 5336.0 - 0 ENSG00000229524.10 protein_coding BAG6 2 OTTHUMG00000031455.5 +423 GL000251.2 HAVANA gene 3129706 3135499 1237.0 + 0 ENSG00000224290.7 protein_coding APOM 2 OTTHUMG00000031550.3 +424 GL000251.2 HAVANA gene 3135618 3138009 671.0 + 0 ENSG00000235516.1 processed_transcript C6orf47-AS1 2 OTTHUMG00000057531.1 +425 GL000251.2 HAVANA gene 3135587 3138059 2473.0 - 0 ENSG00000235360.2 protein_coding C6orf47 2 OTTHUMG00000031463.2 +426 GL000251.2 ENSEMBL gene 3140579 3140692 114.0 + 0 ENSG00000266759.1 misc_RNA RF00019 3 +427 GL000251.2 HAVANA gene 3138519 3143574 3528.0 - 0 ENSG00000236011.6 protein_coding GPANK1 2 OTTHUMG00000031465.6 +428 GL000251.2 HAVANA gene 3146409 3150837 2644.0 + 0 ENSG00000241713.7 protein_coding LY6G5B 2 OTTHUMG00000031527.3 overlapping_locus +429 GL000251.2 HAVANA gene 3142527 3150837 4549.0 + 0 ENSG00000228875.8 protein_coding CSNK2B 2 OTTHUMG00000031326.4 overlapping_locus +430 GL000251.2 HAVANA gene 3153975 3161330 2828.0 - 0 ENSG00000231325.9 protein_coding LY6G5C 2 OTTHUMG00000031528.4 +431 GL000251.2 HAVANA gene 3164239 3180705 3850.0 - 0 ENSG00000235676.9 protein_coding ABHD16A 2 OTTHUMG00000031468.4 +432 GL000251.2 HAVANA gene 3184175 3187885 920.0 + 0 ENSG00000240008.1 protein_coding LY6G6F 2 OTTHUMG00000137420.1 overlapping_locus +433 GL000251.2 HAVANA gene 3189620 3191096 506.0 - 0 ENSG00000224708.8 protein_coding LY6G6E 2 OTTHUMG00000031553.2 +434 GL000251.2 HAVANA gene 3184194 3195206 1533.0 + 0 ENSG00000226603.8 protein_coding LY6G6D 2 OTTHUMG00000031552.3 overlapping_locus +435 GL000251.2 HAVANA gene 3195936 3199133 1103.0 - 0 ENSG00000236183.2 protein_coding LY6G6C 2 OTTHUMG00000031551.3 +436 GL000251.2 HAVANA gene 3195882 3203998 2860.0 + 0 ENSG00000230060.6 protein_coding MPIG6B 2 OTTHUMG00000031410.3 +437 GL000251.2 HAVANA gene 3204326 3207905 2538.0 - 0 ENSG00000226634.6 protein_coding DDAH2 2 OTTHUMG00000031512.4 overlapping_locus +438 GL000251.2 HAVANA gene 3207869 3217043 1942.0 - 0 ENSG00000230685.6 protein_coding CLIC1 2 OTTHUMG00000031384.3 overlapping_locus +439 GL000251.2 ENSEMBL gene 3234208 3234310 103.0 - 0 ENSG00000265409.1 snRNA RF00026 3 +440 GL000251.2 HAVANA gene 3217271 3239933 5344.0 + 0 ENSG00000235222.12 protein_coding MSH5 2 OTTHUMG00000166643.2 overlapping_locus +441 GL000251.2 HAVANA gene 3217300 3242109 4141.0 + 0 ENSG00000254405.10 protein_coding MSH5-SAPCD1 2 OTTHUMG00000031419.5 overlapping_locus +442 GL000251.2 HAVANA gene 3240056 3242109 1558.0 + 0 ENSG00000229176.11 protein_coding SAPCD1 2 OTTHUMG00000031411.2 overlapping_locus +443 GL000251.2 HAVANA gene 3241567 3242846 461.0 - 0 ENSG00000238017.1 processed_transcript SAPCD1-AS1 2 OTTHUMG00000137424.1 +444 GL000251.2 HAVANA gene 3242848 3254536 3638.0 - 0 ENSG00000227144.8 protein_coding VWA7 2 OTTHUMG00000031412.3 +445 GL000251.2 ENSEMBL gene 3256059 3256147 89.0 - 0 ENSG00000264955.1 misc_RNA RF00019 3 +446 GL000251.2 HAVANA gene 3254760 3273193 6081.0 - 0 ENSG00000226589.9 protein_coding VARS 2 OTTHUMG00000031584.5 ncRNA_host +447 GL000251.2 HAVANA gene 3274635 3284226 1119.0 - 0 ENSG00000236826.7 protein_coding LSM2 2 OTTHUMG00000031401.3 +448 GL000251.2 HAVANA gene 3286871 3292316 2544.0 - 0 ENSG00000236251.6 protein_coding HSPA1L 2 OTTHUMG00000031509.2 +449 GL000251.2 HAVANA gene 3292715 3295197 2483.0 + 0 ENSG00000237724.5 protein_coding HSPA1A 2 OTTHUMG00000031502.2 +450 GL000251.2 HAVANA gene 3304988 3307511 2524.0 + 0 ENSG00000224501.5 protein_coding HSPA1B 2 OTTHUMG00000031503.2 +451 GL000251.2 ENSEMBL gene 3312510 3312572 63.0 + 0 ENSG00000264202.1 snoRNA SNORD48 3 +452 GL000251.2 ENSEMBL gene 3314321 3314387 67.0 + 0 ENSG00000263362.1 snoRNA SNORD52 3 +453 GL000251.2 HAVANA gene 3311855 3317010 1803.0 + 0 ENSG00000226710.9 protein_coding C6orf48 2 OTTHUMG00000031466.3 ncRNA_host +454 GL000251.2 HAVANA gene 3335076 3340324 4823.0 - 0 ENSG00000227315.7 protein_coding NEU1 2 OTTHUMG00000031582.3 +455 GL000251.2 HAVANA gene 3340610 3356471 3369.0 - 0 ENSG00000231479.8 protein_coding SLC44A4 2 OTTHUMG00000031413.4 +456 GL000251.2 HAVANA gene 3361186 3361479 223.0 + 0 ENSG00000223557.1 processed_transcript AL662834.1 2 OTTHUMG00000057537.1 +457 GL000251.2 HAVANA gene 3357184 3375112 7268.0 - 0 ENSG00000236759.7 protein_coding EHMT2 2 OTTHUMG00000031471.5 +458 GL000251.2 HAVANA gene 3377032 3379417 1875.0 - 0 ENSG00000237900.2 protein_coding ZBTB12 2 OTTHUMG00000031452.2 +459 GL000251.2 HAVANA gene 3411876 3419151 787.0 - 0 ENSG00000227884.1 processed_transcript C4B-AS1 2 OTTHUMG00000137478.1 +460 GL000251.2 HAVANA gene 3375210 3423101 5542.0 + 0 ENSG00000235017.9 protein_coding C2 2 OTTHUMG00000031489.4 overlapping_locus +461 GL000251.2 HAVANA gene 3423077 3429511 4538.0 + 0 ENSG00000239754.9 protein_coding CFB 2 OTTHUMG00000031499.4 overlapping_locus +462 GL000251.2 HAVANA gene 3429514 3436519 2701.0 - 0 ENSG00000231044.10 protein_coding NELFE 2 OTTHUMG00000031316.4 +463 GL000251.2 HAVANA gene 3436507 3447178 5561.0 + 0 ENSG00000225737.9 protein_coding SKIV2L 2 OTTHUMG00000031427.3 +464 GL000251.2 HAVANA gene 3447237 3449719 2483.0 - 0 ENSG00000225682.6 protein_coding DXO 2 OTTHUMG00000031570.3 +465 GL000251.2 HAVANA gene 3448602 3458873 3546.0 + 0 ENSG00000234947.8 protein_coding STK19 2 OTTHUMG00000031531.4 +466 GL000251.2 HAVANA gene 3459451 3473740 6919.0 + 0 ENSG00000228267.8 protein_coding C4B 2 OTTHUMG00000031486.3 +467 GL000251.2 HAVANA gene 3471051 3474580 2079.0 - 0 ENSG00000236587.1 processed_transcript AL662849.1 2 OTTHUMG00000137633.2 +468 GL000251.2 HAVANA gene 3476620 3479992 2637.0 + 0 ENSG00000233151.6 protein_coding CYP21A2 2 OTTHUMG00000031339.3 +469 GL000251.2 ENSEMBL gene 3516846 3516966 121.0 - 0 ENSG00000265816.1 rRNA RF00001 3 +470 GL000251.2 HAVANA gene 3479477 3555943 15205.0 - 0 ENSG00000233323.10 protein_coding TNXB 2 OTTHUMG00000031358.5 ncRNA_host,overlapping_locus +471 GL000251.2 HAVANA gene 3553597 3566584 3629.0 - 0 ENSG00000234539.9 protein_coding ATF6B 2 OTTHUMG00000031594.4 overlapping_locus +472 GL000251.2 HAVANA gene 3567038 3568622 1345.0 - 0 ENSG00000230907.2 protein_coding FKBPL 2 OTTHUMG00000031409.2 +473 GL000251.2 HAVANA gene 3586696 3592712 4262.0 - 0 ENSG00000229071.9 protein_coding PRRT1 2 OTTHUMG00000031425.4 +474 GL000251.2 HAVANA gene 3591780 3602032 2927.0 + 0 ENSG00000206256.14 protein_coding PPT2 2 OTTHUMG00000166644.2 overlapping_locus +475 GL000251.2 HAVANA gene 3602935 3606633 2621.0 + 0 ENSG00000242038.5 protein_coding EGFL8 2 OTTHUMG00000031522.4 overlapping_locus +476 GL000251.2 HAVANA gene 3592184 3610330 5389.0 + 0 ENSG00000254778.7 protein_coding PPT2-EGFL8 2 OTTHUMG00000031555.7 overlapping_locus +477 GL000251.2 HAVANA gene 3606564 3616448 3631.0 - 0 ENSG00000226467.9 protein_coding AGPAT1 2 OTTHUMG00000031510.3 +478 GL000251.2 HAVANA gene 3616712 3619145 1172.0 + 0 ENSG00000228405.5 protein_coding RNF5 2 OTTHUMG00000031363.2 +479 GL000251.2 HAVANA gene 3619320 3622676 2077.0 - 0 ENSG00000234729.9 protein_coding AGER 2 OTTHUMG00000031400.4 +480 GL000251.2 HAVANA gene 3623085 3628535 4349.0 - 0 ENSG00000237344.7 protein_coding PBX2 2 OTTHUMG00000031396.3 +481 GL000251.2 HAVANA gene 3629115 3633872 1854.0 - 0 ENSG00000233490.7 protein_coding GPSM3 2 OTTHUMG00000031544.4 overlapping_locus +482 GL000251.2 HAVANA gene 3633192 3662414 9754.0 - 0 ENSG00000235396.5 protein_coding NOTCH4 2 OTTHUMG00000031314.3 overlapping_locus +483 GL000251.2 HAVANA gene 3763695 3764654 960.0 + 0 ENSG00000231275.1 processed_pseudogene HNRNPA1P2 2 OTTHUMG00000031592.2 +484 GL000251.2 ENSEMBL gene 3790999 3791105 107.0 + 0 ENSG00000263869.1 snRNA RF00026 3 +485 GL000251.2 HAVANA gene 3731147 3810038 2242.0 - 0 ENSG00000234280.6 protein_coding C6orf10 2 OTTHUMG00000031387.2 +486 GL000251.2 HAVANA gene 3828610 3831778 610.0 + 0 ENSG00000225834.1 processed_transcript HCG23 2 OTTHUMG00000031517.2 +487 GL000251.2 HAVANA gene 3832055 3845208 1470.0 - 0 ENSG00000224770.7 protein_coding BTNL2 2 OTTHUMG00000031383.4 +488 GL000251.2 HAVANA gene 3877968 3883135 1280.0 + 0 ENSG00000227993.9 protein_coding HLA-DRA 2 OTTHUMG00000031567.3 +489 GL000251.2 HAVANA gene 3897901 3911599 343.0 - 0 ENSG00000227526.4 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000031498.5 +490 GL000251.2 ENSEMBL gene 3931432 3931580 149.0 - 0 ENSG00000265223.1 snRNA RNU1-79P 3 +491 GL000251.2 HAVANA gene 3934009 3947126 1207.0 - 0 ENSG00000231679.7 protein_coding HLA-DRB3 2 OTTHUMG00000031497.2 +492 GL000251.2 ENSEMBL gene 3969622 3969768 147.0 - 0 ENSG00000264909.1 snRNA RF00003 3 +493 GL000251.2 HAVANA gene 3973045 3987586 503.0 - 0 ENSG00000232156.1 unprocessed_pseudogene AL662842.1 2 OTTHUMG00000031496.2 +494 GL000251.2 ENSEMBL gene 3995582 3995728 147.0 - 0 ENSG00000264259.1 snRNA RNU1-116P 3 +495 GL000251.2 HAVANA gene 3998045 4028652 1431.0 - 0 ENSG00000206240.11 protein_coding HLA-DRB1 2 OTTHUMG00000031495.3 +496 GL000251.2 HAVANA gene 4072821 4073670 551.0 + 0 ENSG00000231677.1 processed_transcript HLA-DQB1-AS1 2 OTTHUMG00000140107.1 +497 GL000251.2 HAVANA gene 4072827 4075422 310.0 - 0 ENSG00000243252.1 processed_transcript AL731683.2 2 OTTHUMG00000140108.1 overlapping_locus +498 GL000251.2 HAVANA gene 4072371 4079982 1649.0 - 0 ENSG00000206237.6 protein_coding HLA-DQB1 2 OTTHUMG00000031404.2 overlapping_locus +499 GL000251.2 HAVANA gene 4119435 4120266 832.0 - 0 ENSG00000228845.1 unprocessed_pseudogene MTCO3P1 2 OTTHUMG00000031569.4 +500 GL000251.2 HAVANA gene 4131285 4132115 445.0 + 0 ENSG00000232026.1 processed_transcript AL731683.1 2 OTTHUMG00000140114.1 +501 GL000251.2 HAVANA gene 4144013 4144950 357.0 - 0 ENSG00000224793.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000031407.2 +502 GL000251.2 HAVANA gene 4055484 4160989 3147.0 + 0 ENSG00000257473.7 protein_coding HLA-DQA2 2 OTTHUMG00000031388.2 +503 GL000251.2 HAVANA gene 4169671 4177108 2029.0 - 0 ENSG00000224305.9 protein_coding HLA-DQB2 2 OTTHUMG00000031405.2 +504 GL000251.2 HAVANA gene 4224964 4229249 1858.0 - 0 ENSG00000241386.6 protein_coding HLA-DOB 2 OTTHUMG00000031513.5 +505 GL000251.2 HAVANA gene 4234034 4250979 6390.0 - 0 ENSG00000228582.9 protein_coding TAP2 2 OTTHUMG00000031338.4 +506 GL000251.2 HAVANA gene 4252915 4256902 2007.0 - 0 ENSG00000235715.6 protein_coding PSMB8 2 OTTHUMG00000031583.3 +507 GL000251.2 HAVANA gene 4256285 4258694 1951.0 + 0 ENSG00000235540.6 processed_transcript PSMB8-AS1 2 OTTHUMG00000140125.1 overlapping_locus +508 GL000251.2 HAVANA gene 4257408 4266177 4578.0 - 0 ENSG00000232367.5 protein_coding TAP1 2 OTTHUMG00000031337.3 +509 GL000251.2 HAVANA gene 4256335 4291786 3310.0 + 0 ENSG00000243067.7 protein_coding PSMB9 2 OTTHUMG00000031585.6 overlapping_locus +510 GL000251.2 HAVANA gene 4291370 4292047 678.0 - 0 ENSG00000236093.1 transcribed_processed_pseudogene PPP1R2P1 2 OTTHUMG00000031571.2 +511 GL000251.2 HAVANA gene 4308611 4308685 75.0 + 0 ENSG00000228785.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000031488.2 +512 GL000251.2 HAVANA gene 4346824 4365322 4829.0 - 0 ENSG00000234154.10 protein_coding HLA-DMB 2 OTTHUMG00000031467.4 overlapping_locus +513 GL000251.2 HAVANA gene 4360810 4382925 2675.0 - 0 ENSG00000243719.7 protein_coding HLA-DMA 2 OTTHUMG00000031464.3 overlapping_locus +514 GL000251.2 HAVANA gene 4382512 4383026 198.0 + 0 ENSG00000234673.1 processed_transcript AL662845.1 2 OTTHUMG00000149985.1 overlapping_locus +515 GL000251.2 HAVANA gene 4380869 4393720 6957.0 + 0 ENSG00000234507.9 protein_coding BRD2 2 OTTHUMG00000031541.5 overlapping_locus +516 GL000251.2 HAVANA gene 4416346 4421780 4012.0 - 0 ENSG00000232962.11 protein_coding HLA-DOA 2 OTTHUMG00000031511.4 +517 GL000251.2 HAVANA gene 4491301 4491710 410.0 + 0 ENSG00000228579.1 processed_pseudogene RPL32P1 2 OTTHUMG00000031490.1 overlapping_locus +518 GL000251.2 HAVANA gene 4476420 4492625 5748.0 - 0 ENSG00000224103.7 protein_coding HLA-DPA1 2 OTTHUMG00000031328.7 +519 GL000251.2 HAVANA gene 4487777 4498987 2781.0 + 0 ENSG00000230708.10 protein_coding HLA-DPB1 2 OTTHUMG00000031346.8 overlapping_locus +520 GL000251.2 HAVANA gene 4503526 4509112 733.0 - 0 ENSG00000223990.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000031331.2 +521 GL000251.2 HAVANA gene 4515549 4519104 676.0 - 0 ENSG00000230816.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000031335.2 +522 GL000251.2 HAVANA gene 4524222 4540543 1591.0 + 0 ENSG00000225132.9 transcribed_unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000031350.2 +523 GL000251.2 HAVANA gene 4542673 4554810 229.0 - 0 ENSG00000227936.1 unprocessed_pseudogene HLA-DPA3 2 OTTHUMG00000031333.2 +524 GL000251.2 HAVANA gene 4556275 4559268 716.0 + 0 ENSG00000237196.1 processed_transcript HCG24 2 OTTHUMG00000031448.2 +525 GL000251.2 HAVANA gene 4574189 4604006 6740.0 - 0 ENSG00000227801.8 protein_coding COL11A2 2 OTTHUMG00000031306.4 +526 GL000251.2 ENSEMBL gene 4611106 4611201 96.0 + 0 ENSG00000266781.2 misc_RNA RF00019 3 +527 GL000251.2 HAVANA gene 4605095 4612358 4089.0 - 0 ENSG00000227322.11 protein_coding RXRB 2 OTTHUMG00000031596.5 +528 GL000251.2 HAVANA gene 4611950 4615944 2845.0 + 0 ENSG00000226614.11 protein_coding SLC39A7 2 OTTHUMG00000031538.4 +529 GL000251.2 HAVANA gene 4616147 4618332 1171.0 + 0 ENSG00000228712.2 protein_coding HSD17B8 2 OTTHUMG00000031397.2 +530 GL000251.2 HAVANA gene 4619998 4624223 1816.0 + 0 ENSG00000226788.3 protein_coding RING1 2 OTTHUMG00000031576.2 +531 GL000251.2 HAVANA gene 4627206 4627829 624.0 + 0 ENSG00000230949.1 processed_pseudogene ZNF70P1 2 OTTHUMG00000031428.2 +532 GL000251.2 HAVANA gene 4649316 4651207 984.0 + 0 ENSG00000237536.1 processed_pseudogene HTATSF1P1 2 OTTHUMG00000031382.2 +533 GL000251.2 HAVANA gene 4661031 4666486 1374.0 + 0 ENSG00000224096.5 processed_transcript HCG25 2 OTTHUMG00000031453.3 +534 GL000251.2 HAVANA gene 4661769 4683528 4503.0 - 0 ENSG00000225590.9 protein_coding VPS52 2 OTTHUMG00000031574.9 +535 GL000251.2 HAVANA gene 4683491 4687991 1898.0 + 0 ENSG00000235650.6 protein_coding RPS18 2 OTTHUMG00000031323.4 +536 GL000251.2 HAVANA gene 4688613 4690306 1694.0 + 0 ENSG00000226936.4 protein_coding B3GALT4 2 OTTHUMG00000031381.2 +537 GL000251.2 HAVANA gene 4690589 4701012 3115.0 - 0 ENSG00000204221.11 protein_coding WDR46 2 OTTHUMG00000031491.4 +538 GL000251.2 HAVANA gene 4700787 4709886 2953.0 + 0 ENSG00000237335.8 protein_coding PFDN6 2 OTTHUMG00000031547.3 +539 GL000251.2 HAVANA gene 4703139 4710809 4541.0 - 0 ENSG00000224841.9 protein_coding RGL2 2 OTTHUMG00000031342.4 +540 GL000251.2 HAVANA gene 4711179 4725870 4999.0 - 0 ENSG00000112493.12 protein_coding TAPBP 2 OTTHUMG00000031360.3 +541 GL000251.2 HAVANA gene 4725901 4729427 2715.0 - 0 ENSG00000229253.5 protein_coding ZBTB22 2 OTTHUMG00000031390.4 +542 GL000251.2 HAVANA gene 4730043 4740754 3666.0 - 0 ENSG00000227046.8 protein_coding DAXX 2 OTTHUMG00000031504.5 +543 GL000251.2 HAVANA gene 4750465 4750982 518.0 + 0 ENSG00000226575.3 processed_pseudogene MYL8P 2 OTTHUMG00000031480.1 +544 GL000251.2 HAVANA gene 4777033 4777728 696.0 - 0 ENSG00000232639.4 processed_pseudogene LYPLA2P1 2 OTTHUMG00000031408.2 +545 GL000252.2 HAVANA gene 49226 49597 372.0 - 0 ENSG00000230511.1 processed_pseudogene NOP56P1 2 OTTHUMG00000148850.1 +546 GL000252.2 HAVANA gene 103471 104608 709.0 - 0 ENSG00000235460.1 processed_transcript CR753651.1 2 OTTHUMG00000148852.1 +547 GL000252.2 HAVANA gene 127018 127649 632.0 + 0 ENSG00000224158.1 processed_pseudogene RPL13P 2 OTTHUMG00000148853.1 +548 GL000252.2 HAVANA gene 125227 128952 2458.0 - 0 ENSG00000225604.1 processed_transcript LINC01623 2 OTTHUMG00000148851.1 +549 GL000252.2 ENSEMBL gene 243078 243376 299.0 + 0 ENSG00000263491.2 misc_RNA RF00017 3 +550 GL000252.2 HAVANA gene 251806 253087 1032.0 + 0 ENSG00000235405.2 processed_transcript HCG15 2 OTTHUMG00000148855.1 overlapping_locus +551 GL000252.2 HAVANA gene 252403 254139 317.0 + 0 ENSG00000239675.1 processed_transcript CR759835.1 2 OTTHUMG00000148854.1 overlapping_locus +552 GL000252.2 HAVANA gene 260388 270919 3176.0 - 0 ENSG00000235178.4 protein_coding ZNF311 2 OTTHUMG00000149018.1 +553 GL000252.2 HAVANA gene 292283 293210 928.0 - 0 ENSG00000225048.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000149020.1 +554 GL000252.2 HAVANA gene 309816 310843 1028.0 - 0 ENSG00000229328.1 protein_coding OR2W1 2 OTTHUMG00000149017.3 +555 GL000252.2 HAVANA gene 337425 338200 776.0 - 0 ENSG00000237608.1 unprocessed_pseudogene OR2P1P 2 OTTHUMG00000149021.1 +556 GL000252.2 ENSEMBL gene 329599 342125 414.0 + 0 ENSG00000275606.1 protein_coding CR388407.1 3 +557 GL000252.2 HAVANA gene 342174 342769 596.0 - 0 ENSG00000229179.1 processed_pseudogene SAR1AP1 2 OTTHUMG00000149128.1 +558 GL000252.2 HAVANA gene 351908 352914 1007.0 - 0 ENSG00000225736.3 protein_coding OR2B3 2 OTTHUMG00000149019.3 +559 GL000252.2 HAVANA gene 366551 367489 939.0 + 0 ENSG00000226192.1 unprocessed_pseudogene OR2J1 2 OTTHUMG00000148856.2 +560 GL000252.2 HAVANA gene 377493 378428 936.0 + 0 ENSG00000229866.1 protein_coding OR2J3 2 OTTHUMG00000148858.2 +561 GL000252.2 HAVANA gene 389811 394509 389.0 + 0 ENSG00000227448.1 processed_transcript CR388415.1 2 OTTHUMG00000149115.1 +562 GL000252.2 HAVANA gene 403478 404414 937.0 - 0 ENSG00000236771.2 unprocessed_pseudogene CR388415.2 2 OTTHUMG00000148857.1 +563 GL000252.2 HAVANA gene 438910 440181 1272.0 + 0 ENSG00000232945.4 protein_coding OR2J2 2 OTTHUMG00000148865.3 +564 GL000252.2 HAVANA gene 447125 448060 936.0 + 0 ENSG00000228483.2 unprocessed_pseudogene OR2J4P 2 OTTHUMG00000148860.1 +565 GL000252.2 HAVANA gene 480874 481817 944.0 + 0 ENSG00000229441.1 unprocessed_pseudogene CR933537.1 2 OTTHUMG00000148861.1 +566 GL000252.2 HAVANA gene 494865 495795 931.0 - 0 ENSG00000224990.1 unprocessed_pseudogene OR2G1P 2 OTTHUMG00000148864.1 +567 GL000252.2 HAVANA gene 528315 529691 879.0 - 0 ENSG00000233168.1 unprocessed_pseudogene OR2U1P 2 OTTHUMG00000148863.1 +568 GL000252.2 HAVANA gene 489611 532697 464.0 + 0 ENSG00000235273.1 processed_transcript CR753509.2 2 OTTHUMG00000148859.1 +569 GL000252.2 HAVANA gene 534074 535033 960.0 - 0 ENSG00000234351.1 unprocessed_pseudogene OR2U2P 2 OTTHUMG00000148862.1 +570 GL000252.2 HAVANA gene 556340 557282 943.0 + 0 ENSG00000232469.1 unprocessed_pseudogene CR753509.1 2 OTTHUMG00000148868.1 +571 GL000252.2 HAVANA gene 572333 573298 966.0 + 0 ENSG00000237777.4 protein_coding OR14J1 2 OTTHUMG00000148867.2 +572 GL000252.2 HAVANA gene 595270 596705 1436.0 - 0 ENSG00000228197.1 processed_pseudogene DDX6P1 2 OTTHUMG00000148869.1 +573 GL000252.2 HAVANA gene 662064 663132 1069.0 + 0 ENSG00000227446.2 protein_coding OR12D2 2 OTTHUMG00000148866.2 +574 GL000252.2 HAVANA gene 682794 683756 963.0 + 0 ENSG00000249103.1 unprocessed_pseudogene OR12D1 2 OTTHUMG00000148870.2 +575 GL000252.2 HAVANA gene 688137 697489 218.0 - 0 ENSG00000230742.3 processed_transcript OR5V1 2 OTTHUMG00000148872.1 overlapping_locus +576 GL000252.2 HAVANA gene 704828 706499 1672.0 + 0 ENSG00000229412.5 protein_coding OR10C1 2 OTTHUMG00000148879.3 +577 GL000252.2 HAVANA gene 639071 715620 2011.0 - 0 ENSG00000242022.8 protein_coding OR12D3 2 OTTHUMG00000148878.1 overlapping_locus +578 GL000252.2 HAVANA gene 691032 722594 2864.0 - 0 ENSG00000234347.8 protein_coding OR11A1 2 OTTHUMG00000148873.1 overlapping_locus +579 GL000252.2 HAVANA gene 722704 729851 3708.0 + 0 ENSG00000232984.8 protein_coding OR2H1 2 OTTHUMG00000148877.1 +580 GL000252.2 HAVANA gene 730119 735329 381.0 - 0 ENSG00000233989.1 unprocessed_pseudogene UBDP1 2 OTTHUMG00000148875.1 +581 GL000252.2 HAVANA gene 740548 741594 1047.0 - 0 ENSG00000229889.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000148871.1 +582 GL000252.2 HAVANA gene 752289 753425 1137.0 - 0 ENSG00000228515.3 protein_coding MAS1L 2 OTTHUMG00000148876.2 +583 GL000252.2 HAVANA gene 754794 755199 406.0 - 0 ENSG00000223769.3 processed_pseudogene RPS17P1 2 OTTHUMG00000148874.1 +584 GL000252.2 HAVANA gene 763032 776079 877.0 + 0 ENSG00000232356.1 processed_transcript CR388393.1 2 OTTHUMG00000148880.1 +585 GL000252.2 HAVANA gene 794947 799095 2777.0 + 0 ENSG00000224446.5 processed_transcript LINC01015 2 OTTHUMG00000148881.1 +586 GL000252.2 HAVANA gene 803231 804314 1084.0 - 0 ENSG00000225274.1 unprocessed_pseudogene GPR53P 2 OTTHUMG00000148893.1 +587 GL000252.2 HAVANA gene 818762 819709 948.0 + 0 ENSG00000237725.2 unprocessed_pseudogene OR2I1P 2 OTTHUMG00000148979.1 +588 GL000252.2 HAVANA gene 821155 825468 990.0 - 0 ENSG00000231968.2 protein_coding UBD 2 OTTHUMG00000148975.1 overlapping_locus +589 GL000252.2 HAVANA gene 839458 840385 928.0 + 0 ENSG00000225955.2 unprocessed_pseudogene OR2H5P 2 OTTHUMG00000148977.1 +590 GL000252.2 HAVANA gene 843008 843297 290.0 + 0 ENSG00000232189.2 processed_pseudogene TMEM183AP1 2 OTTHUMG00000148980.1 +591 GL000252.2 ENSEMBL gene 847798 847881 84.0 + 0 ENSG00000265926.1 snoRNA SNORD32B 3 +592 GL000252.2 HAVANA gene 848057 848574 518.0 + 0 ENSG00000227961.1 processed_pseudogene RPL13AP 2 OTTHUMG00000148974.1 +593 GL000252.2 HAVANA gene 853004 854587 1584.0 + 0 ENSG00000229680.4 protein_coding OR2H2 2 OTTHUMG00000148972.1 +594 GL000252.2 HAVANA gene 821155 898710 7011.0 - 0 ENSG00000237112.8 protein_coding GABBR1 2 OTTHUMG00000148971.1 overlapping_locus +595 GL000252.2 HAVANA gene 901607 901890 284.0 - 0 ENSG00000229210.3 processed_pseudogene SUMO2P1 2 OTTHUMG00000148973.1 +596 GL000252.2 HAVANA gene 922526 937918 3058.0 + 0 ENSG00000234623.9 protein_coding MOG 2 OTTHUMG00000148976.2 +597 GL000252.2 HAVANA gene 937938 946648 2149.0 - 0 ENSG00000223852.7 protein_coding ZFP57 2 OTTHUMG00000148978.1 +598 GL000252.2 HAVANA gene 973655 974077 423.0 - 0 ENSG00000238053.1 processed_pseudogene ZDHHC20P1 2 OTTHUMG00000148882.1 +599 GL000252.2 HAVANA gene 986055 987045 991.0 - 0 ENSG00000233617.1 unprocessed_pseudogene CR753818.1 2 OTTHUMG00000148899.1 +600 GL000252.2 HAVANA gene 989745 990215 471.0 - 0 ENSG00000240845.1 transcribed_processed_pseudogene RPL23AP1 2 OTTHUMG00000148883.1 overlapping_locus +601 GL000252.2 HAVANA gene 985849 1001601 4340.0 + 0 ENSG00000235220.10 protein_coding HLA-F 2 OTTHUMG00000148884.3 +602 GL000252.2 HAVANA gene 1011359 1011583 225.0 + 0 ENSG00000235458.1 unprocessed_pseudogene CR753818.2 2 OTTHUMG00000148887.1 +603 GL000252.2 HAVANA gene 1004803 1012039 1157.0 - 0 ENSG00000248230.1 transcribed_unprocessed_pseudogene MICE 2 OTTHUMG00000148886.1 overlapping_locus +604 GL000252.2 HAVANA gene 989677 1012119 4174.0 - 0 ENSG00000230017.6 processed_transcript HLA-F-AS1 2 OTTHUMG00000148889.1 overlapping_locus +605 GL000252.2 ENSEMBL gene 1013440 1013541 102.0 + 0 ENSG00000264218.1 misc_RNA RF00019 3 +606 GL000252.2 HAVANA gene 1013796 1014216 421.0 - 0 ENSG00000228102.1 processed_pseudogene IFITM4P 2 OTTHUMG00000148888.1 +607 GL000252.2 HAVANA gene 1054738 1055735 998.0 - 0 ENSG00000235317.4 unprocessed_pseudogene HCG4 2 OTTHUMG00000148911.1 +608 GL000252.2 HAVANA gene 1053845 1060626 5553.0 + 0 ENSG00000223606.7 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000148890.2 +609 GL000252.2 HAVANA gene 1063230 1065238 734.0 + 0 ENSG00000261814.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172774.1 +610 GL000252.2 HAVANA gene 1066010 1066806 797.0 - 0 ENSG00000227030.2 processed_pseudogene RPL7AP7 2 OTTHUMG00000148891.1 +611 GL000252.2 HAVANA gene 1075382 1075513 132.0 - 0 ENSG00000225763.1 unprocessed_pseudogene MICG 2 OTTHUMG00000148892.1 +612 GL000252.2 HAVANA gene 1090198 1091177 980.0 - 0 ENSG00000231430.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000148901.1 +613 GL000252.2 HAVANA gene 1089780 1093938 1763.0 + 0 ENSG00000235346.9 protein_coding HLA-G 2 OTTHUMG00000149116.2 +614 GL000252.2 HAVANA gene 1115159 1115287 129.0 - 0 ENSG00000235536.1 unprocessed_pseudogene CR388220.3 2 OTTHUMG00000148895.1 +615 GL000252.2 HAVANA gene 1144502 1145470 969.0 - 0 ENSG00000226517.1 unprocessed_pseudogene CR388220.2 2 OTTHUMG00000148904.1 +616 GL000252.2 HAVANA gene 1144960 1147682 1088.0 + 0 ENSG00000227669.3 unprocessed_pseudogene HLA-H 2 OTTHUMG00000148894.1 +617 GL000252.2 HAVANA gene 1153766 1154897 450.0 + 0 ENSG00000229293.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000148905.1 +618 GL000252.2 HAVANA gene 1163737 1164103 192.0 + 0 ENSG00000228891.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000148900.1 +619 GL000252.2 HAVANA gene 1164976 1165838 328.0 - 0 ENSG00000230357.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000148902.1 +620 GL000252.2 HAVANA gene 1183137 1184127 991.0 - 0 ENSG00000231941.1 unprocessed_pseudogene HCG4B 2 OTTHUMG00000148913.1 +621 GL000252.2 HAVANA gene 1183613 1186388 1035.0 + 0 ENSG00000232708.1 unprocessed_pseudogene HLA-K 2 OTTHUMG00000148912.1 +622 GL000252.2 HAVANA gene 1189498 1189683 186.0 + 0 ENSG00000233239.1 unprocessed_pseudogene HLA-U 2 OTTHUMG00000148909.1 +623 GL000252.2 HAVANA gene 1197628 1198620 993.0 - 0 ENSG00000225114.1 unprocessed_pseudogene CR388220.1 2 OTTHUMG00000148906.1 +624 GL000252.2 HAVANA gene 1212136 1214110 771.0 + 0 ENSG00000234849.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000148908.2 +625 GL000252.2 HAVANA gene 1226342 1228004 813.0 - 0 ENSG00000226713.1 unprocessed_pseudogene MICD 2 OTTHUMG00000148907.1 +626 GL000252.2 HAVANA gene 1230638 1233937 663.0 + 0 ENSG00000234313.2 processed_transcript HCG9 2 OTTHUMG00000148910.1 +627 GL000252.2 HAVANA gene 1248747 1249143 258.0 + 0 ENSG00000228458.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000148903.1 +628 GL000252.2 HAVANA gene 1249975 1250852 335.0 - 0 ENSG00000231719.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000148896.1 +629 GL000252.2 HAVANA gene 1261656 1262651 996.0 - 0 ENSG00000227025.1 unprocessed_pseudogene CR388205.1 2 OTTHUMG00000148898.1 overlapping_locus +630 GL000252.2 HAVANA gene 1144955 1265390 3155.0 + 0 ENSG00000235657.9 protein_coding HLA-A 2 OTTHUMG00000148897.1 +631 GL000252.2 HAVANA gene 1262118 1265491 1634.0 + 0 ENSG00000234074.7 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000148914.1 +632 GL000252.2 HAVANA gene 1287599 1288889 984.0 + 0 ENSG00000235764.1 processed_pseudogene ETF1P1 2 OTTHUMG00000148985.1 +633 GL000252.2 ENSEMBL gene 1291802 1291869 68.0 + 0 ENSG00000275415.1 misc_RNA RF02218 3 +634 GL000252.2 ENSEMBL gene 1314037 1314112 76.0 + 0 ENSG00000273764.1 misc_RNA RF02219 3 +635 GL000252.2 ENSEMBL gene 1317002 1317105 104.0 + 0 ENSG00000274401.1 misc_RNA RF02220 3 +636 GL000252.2 HAVANA gene 1256549 1317562 20819.0 - 0 ENSG00000225618.6 processed_transcript ZNRD1ASP 2 OTTHUMG00000148915.1 overlapping_locus +637 GL000252.2 HAVANA gene 1314821 1320825 3672.0 + 0 ENSG00000236949.6 protein_coding ZNRD1 2 OTTHUMG00000148991.1 ncRNA_host +638 GL000252.2 HAVANA gene 1322625 1326249 2538.0 + 0 ENSG00000227720.6 protein_coding PPP1R11 2 OTTHUMG00000148988.2 +639 GL000252.2 HAVANA gene 1326182 1331803 2206.0 - 0 ENSG00000235022.8 protein_coding RNF39 2 OTTHUMG00000148986.1 +640 GL000252.2 HAVANA gene 1358814 1369016 3537.0 - 0 ENSG00000233573.9 protein_coding TRIM31 2 OTTHUMG00000148989.1 +641 GL000252.2 HAVANA gene 1361157 1370634 549.0 + 0 ENSG00000232510.1 processed_transcript TRIM31-AS1 2 OTTHUMG00000148917.1 +642 GL000252.2 ENSEMBL gene 1388718 1388879 162.0 - 0 ENSG00000265138.1 snoRNA RF00554 3 +643 GL000252.2 HAVANA gene 1392026 1404652 2497.0 + 0 ENSG00000227458.8 protein_coding TRIM40 2 OTTHUMG00000148987.1 +644 GL000252.2 HAVANA gene 1407862 1416850 3546.0 - 0 ENSG00000227472.8 protein_coding TRIM10 2 OTTHUMG00000148990.1 +645 GL000252.2 HAVANA gene 1419107 1428597 2515.0 + 0 ENSG00000235960.9 protein_coding TRIM15 2 OTTHUMG00000148916.2 +646 GL000252.2 HAVANA gene 1442670 1444493 1203.0 - 0 ENSG00000225109.1 processed_pseudogene PAIP1P1 2 OTTHUMG00000148918.1 overlapping_locus +647 GL000252.2 HAVANA gene 1440327 1469303 4377.0 - 0 ENSG00000226060.7 protein_coding TRIM26 2 OTTHUMG00000149120.3 overlapping_locus +648 GL000252.2 HAVANA gene 1494171 1498147 753.0 + 0 ENSG00000225659.1 unprocessed_pseudogene TRIM26BP 2 OTTHUMG00000148919.1 +649 GL000252.2 HAVANA gene 1515466 1522820 4768.0 + 0 ENSG00000241166.6 transcribed_unprocessed_pseudogene HLA-L 2 OTTHUMG00000148928.1 +650 GL000252.2 HAVANA gene 1489909 1581974 759.0 - 0 ENSG00000241053.5 processed_transcript HCG17 2 OTTHUMG00000148933.1 overlapping_locus +651 GL000252.2 HAVANA gene 1546655 1582990 5633.0 - 0 ENSG00000224705.6 processed_transcript HCG18 2 OTTHUMG00000148923.1 overlapping_locus +652 GL000252.2 HAVANA gene 1582319 1599575 4226.0 + 0 ENSG00000232839.10 protein_coding TRIM39 2 OTTHUMG00000148931.2 +653 GL000252.2 HAVANA gene 1585152 1602730 2717.0 + 0 ENSG00000243009.6 protein_coding RPP21 2 OTTHUMG00000148921.1 +654 GL000252.2 HAVANA gene 1607262 1607396 135.0 + 0 ENSG00000230509.1 unprocessed_pseudogene HLA-N 2 OTTHUMG00000148922.1 +655 GL000252.2 HAVANA gene 1615125 1615758 634.0 - 0 ENSG00000235561.1 processed_pseudogene CR759281.1 2 OTTHUMG00000148924.1 +656 GL000252.2 HAVANA gene 1618957 1620125 1169.0 - 0 ENSG00000232473.1 processed_pseudogene UBQLN1P1 2 OTTHUMG00000148926.1 +657 GL000252.2 HAVANA gene 1670565 1675169 1055.0 + 0 ENSG00000229651.1 unprocessed_pseudogene MICC 2 OTTHUMG00000148930.1 +658 GL000252.2 HAVANA gene 1722322 1723864 1267.0 + 0 ENSG00000236369.1 processed_pseudogene TMPOP1 2 OTTHUMG00000148932.1 +659 GL000252.2 HAVANA gene 1724756 1726125 1370.0 + 0 ENSG00000231157.3 processed_pseudogene SUCLA2P1 2 OTTHUMG00000148920.1 +660 GL000252.2 HAVANA gene 1741776 1742426 651.0 + 0 ENSG00000227652.4 processed_pseudogene RANP1 2 OTTHUMG00000148927.1 +661 GL000252.2 HAVANA gene 1745299 1750037 2975.0 + 0 ENSG00000229252.6 protein_coding HLA-E 2 OTTHUMG00000148925.1 +662 GL000252.2 HAVANA gene 1772090 1775044 851.0 + 0 ENSG00000233315.1 processed_transcript LINC02569 2 OTTHUMG00000149022.1 +663 GL000252.2 HAVANA gene 1797200 1812998 8646.0 - 0 ENSG00000229470.9 protein_coding GNL1 2 OTTHUMG00000149024.2 +664 GL000252.2 HAVANA gene 1812710 1819547 4281.0 + 0 ENSG00000223887.10 protein_coding PRR3 2 OTTHUMG00000149025.1 +665 GL000252.2 HAVANA gene 1827203 1853009 4340.0 + 0 ENSG00000232169.9 protein_coding ABCF1 2 OTTHUMG00000149028.2 +666 GL000252.2 HAVANA gene 1856230 1874442 5215.0 - 0 ENSG00000227804.7 protein_coding PPP1R10 2 OTTHUMG00000149023.1 +667 GL000252.2 HAVANA gene 1873539 1882225 1888.0 + 0 ENSG00000233813.8 protein_coding MRPS18B 2 OTTHUMG00000149027.1 +668 GL000252.2 HAVANA gene 1889461 1889727 267.0 + 0 ENSG00000237156.4 processed_pseudogene PTMAP1 2 OTTHUMG00000149026.1 overlapping_locus +669 GL000252.2 HAVANA gene 1882672 1902652 4035.0 + 0 ENSG00000229061.8 protein_coding ATAT1 2 OTTHUMG00000149029.1 overlapping_locus +670 GL000252.2 HAVANA gene 1902868 1908932 1863.0 + 0 ENSG00000237012.9 protein_coding C6orf136 2 OTTHUMG00000148929.1 +671 GL000252.2 HAVANA gene 1908942 1928891 4008.0 - 0 ENSG00000233418.8 protein_coding DHX16 2 OTTHUMG00000148944.2 +672 GL000252.2 HAVANA gene 1932243 1943749 4599.0 - 0 ENSG00000234000.8 protein_coding PPP1R18 2 OTTHUMG00000148941.1 +673 GL000252.2 HAVANA gene 1943901 1947274 2045.0 - 0 ENSG00000236843.8 protein_coding NRM 2 OTTHUMG00000148952.1 +674 GL000252.2 HAVANA gene 1952658 1953387 730.0 - 0 ENSG00000233091.1 processed_pseudogene RPL7P4 2 OTTHUMG00000148949.1 +675 GL000252.2 HAVANA gene 1958919 1969035 738.0 + 0 ENSG00000229681.1 processed_transcript MDC1-AS1 2 OTTHUMG00000148934.1 +676 GL000252.2 HAVANA gene 1955659 1973740 8064.0 - 0 ENSG00000225589.9 protein_coding MDC1 2 OTTHUMG00000148951.2 +677 GL000252.2 HAVANA gene 1976051 1981276 3359.0 + 0 ENSG00000235067.10 protein_coding TUBB 2 OTTHUMG00000148943.1 +678 GL000252.2 ENSEMBL gene 1992155 1992265 111.0 - 0 ENSG00000263950.1 misc_RNA RF00019 3 +679 GL000252.2 HAVANA gene 1983559 1998584 3186.0 - 0 ENSG00000206379.12 protein_coding FLOT1 2 OTTHUMG00000148942.2 ncRNA_host +680 GL000252.2 HAVANA gene 1999050 2000405 1356.0 - 0 ENSG00000227231.3 protein_coding IER3 2 OTTHUMG00000148950.1 +681 GL000252.2 ENSEMBL gene 2007009 2007260 252.0 + 0 ENSG00000264417.2 misc_RNA RF00017 3 +682 GL000252.2 HAVANA gene 2022799 2048530 1371.0 + 0 ENSG00000224923.5 processed_transcript HCG20 2 OTTHUMG00000148956.1 +683 GL000252.2 HAVANA gene 2054923 2086923 2191.0 - 0 ENSG00000227596.5 processed_transcript CR388215.1 2 OTTHUMG00000148939.1 +684 GL000252.2 HAVANA gene 2095787 2104421 799.0 - 0 ENSG00000231733.1 processed_transcript LINC02570 2 OTTHUMG00000148948.1 +685 GL000252.2 ENSEMBL gene 2120523 2120825 303.0 + 0 ENSG00000265255.1 misc_RNA RF00100 3 +686 GL000252.2 HAVANA gene 2123255 2132199 3994.0 - 0 ENSG00000236492.1 processed_transcript DDR1-DT 2 OTTHUMG00000148935.1 +687 GL000252.2 HAVANA gene 2137270 2156466 5651.0 + 0 ENSG00000230456.10 protein_coding DDR1 2 OTTHUMG00000148940.3 +688 GL000252.2 HAVANA gene 2164488 2170410 2353.0 + 0 ENSG00000226384.10 protein_coding GTF2H4 2 OTTHUMG00000148946.2 overlapping_locus +689 GL000252.2 ENSEMBL gene 2170509 2182773 4070.0 + 0 ENSG00000285192.1 protein_coding VARS2 3 +690 GL000252.2 HAVANA gene 2164546 2182776 8458.0 + 0 ENSG00000230985.10 protein_coding VARS2 2 OTTHUMG00000148945.2 overlapping_locus +691 GL000252.2 HAVANA gene 2187655 2188477 691.0 - 0 ENSG00000225454.2 protein_coding SFTA2 2 OTTHUMG00000148953.1 +692 GL000252.2 ENSEMBL gene 2188921 2189012 92.0 - 0 ENSG00000266841.1 misc_RNA RF00019 3 +693 GL000252.2 HAVANA gene 2197308 2210527 3573.0 + 0 ENSG00000232251.5 protein_coding MUCL3 2 OTTHUMG00000148947.2 +694 GL000252.2 HAVANA gene 2202286 2211168 605.0 - 0 ENSG00000235747.1 processed_transcript HCG21 2 OTTHUMG00000148937.1 +695 GL000252.2 HAVANA gene 2240021 2246201 3793.0 + 0 ENSG00000237962.5 protein_coding MUC21 2 OTTHUMG00000148954.1 +696 GL000252.2 HAVANA gene 2286555 2291354 612.0 + 0 ENSG00000234461.1 processed_transcript CR753812.1 2 OTTHUMG00000148936.1 +697 GL000252.2 HAVANA gene 2312821 2319262 2184.0 + 0 ENSG00000229501.6 transcribed_processed_pseudogene HCG22 2 OTTHUMG00000148955.2 +698 GL000252.2 ENSEMBL gene 2342381 2342480 100.0 + 0 ENSG00000263467.1 snRNA RF00026 3 +699 GL000252.2 HAVANA gene 2370587 2371923 1140.0 - 0 ENSG00000225543.2 protein_coding C6orf15 2 OTTHUMG00000148960.1 +700 GL000252.2 HAVANA gene 2374454 2379793 2536.0 - 0 ENSG00000237123.2 protein_coding CDSN 2 OTTHUMG00000148963.2 +701 GL000252.2 HAVANA gene 2396864 2398680 1152.0 - 0 ENSG00000232127.2 protein_coding PSORS1C2 2 OTTHUMG00000148957.1 +702 GL000252.2 HAVANA gene 2374114 2399368 4688.0 + 0 ENSG00000233439.8 protein_coding PSORS1C1 2 OTTHUMG00000148958.1 +703 GL000252.2 HAVANA gene 2400054 2400240 187.0 + 0 ENSG00000232007.1 processed_pseudogene POLR2LP1 2 OTTHUMG00000148959.1 +704 GL000252.2 HAVANA gene 2401761 2417533 4556.0 - 0 ENSG00000206355.11 protein_coding CCHCR1 2 OTTHUMG00000149121.3 +705 GL000252.2 HAVANA gene 2417862 2423531 3291.0 + 0 ENSG00000233890.6 protein_coding TCF19 2 OTTHUMG00000149122.2 +706 GL000252.2 HAVANA gene 2423653 2430027 1880.0 - 0 ENSG00000229094.9 protein_coding POU5F1 2 OTTHUMG00000148961.2 +707 GL000252.2 HAVANA gene 2433068 2437233 593.0 - 0 ENSG00000231450.1 processed_transcript PSORS1C3 2 OTTHUMG00000148964.1 +708 GL000252.2 HAVANA gene 2459497 2461249 516.0 - 0 ENSG00000228469.1 processed_transcript CR388229.1 2 OTTHUMG00000148962.1 +709 GL000252.2 HAVANA gene 2457092 2463297 1805.0 + 0 ENSG00000234079.2 processed_transcript HCG27 2 OTTHUMG00000148938.1 +710 GL000252.2 HAVANA gene 2526549 2529920 2569.0 - 0 ENSG00000228299.9 protein_coding HLA-C 2 OTTHUMG00000148965.4 +711 GL000252.2 HAVANA gene 2533329 2536501 3173.0 + 0 ENSG00000236374.1 processed_pseudogene USP8P1 2 OTTHUMG00000148969.1 +712 GL000252.2 HAVANA gene 2538057 2539259 1203.0 + 0 ENSG00000229430.3 processed_pseudogene RPL3P2 2 OTTHUMG00000148968.1 +713 GL000252.2 HAVANA gene 2545250 2546704 1455.0 - 0 ENSG00000229103.1 processed_pseudogene WASF5P 2 OTTHUMG00000148967.1 +714 GL000252.2 HAVANA gene 2565549 2566283 306.0 - 0 ENSG00000231710.1 unprocessed_pseudogene CR759814.1 2 OTTHUMG00000148966.1 +715 GL000252.2 ENSEMBL gene 2744297 2744398 102.0 - 0 ENSG00000263833.1 misc_RNA RF00019 3 +716 GL000252.2 HAVANA gene 2745694 2758910 2683.0 + 0 ENSG00000224378.9 protein_coding MICB 2 OTTHUMG00000148984.1 +717 GL000252.2 HAVANA gene 2767269 2768080 498.0 - 0 ENSG00000231118.3 processed_pseudogene PPIAP9 2 OTTHUMG00000148981.1 +718 GL000252.2 HAVANA gene 2775887 2776466 580.0 + 0 ENSG00000229535.1 processed_pseudogene RPL15P4 2 OTTHUMG00000148983.1 +719 GL000252.2 HAVANA gene 2776490 2778005 955.0 + 0 ENSG00000231975.2 protein_coding MCCD1 2 OTTHUMG00000148982.1 +720 GL000252.2 ENSEMBL gene 2784146 2784221 76.0 - 0 ENSG00000266419.1 snoRNA SNORD117 3 +721 GL000252.2 ENSEMBL gene 2788871 2788948 78.0 - 0 ENSG00000264591.1 snoRNA SNORD84 3 +722 GL000252.2 HAVANA gene 2790074 2790908 527.0 + 0 ENSG00000236019.1 processed_transcript DDX39B-AS1 2 OTTHUMG00000148970.1 +723 GL000252.2 HAVANA gene 2777992 2794348 7212.0 - 0 ENSG00000230624.10 protein_coding DDX39B 2 OTTHUMG00000149014.4 ncRNA_host,overlapping_locus +724 GL000252.2 HAVANA gene 2792232 2794614 1652.0 - 0 ENSG00000234668.3 protein_coding ATP6V1G2 2 OTTHUMG00000149009.1 overlapping_locus +725 GL000252.2 HAVANA gene 2794636 2806586 1779.0 + 0 ENSG00000236196.8 protein_coding NFKBIL1 2 OTTHUMG00000148995.2 +726 GL000252.2 HAVANA gene 2819785 2822057 1737.0 + 0 ENSG00000223919.8 protein_coding LTA 2 OTTHUMG00000149015.1 +727 GL000252.2 HAVANA gene 2823300 2826069 1676.0 + 0 ENSG00000228849.3 protein_coding TNF 2 OTTHUMG00000148993.1 +728 GL000252.2 HAVANA gene 2828288 2830255 926.0 - 0 ENSG00000236925.7 protein_coding LTB 2 OTTHUMG00000149004.1 +729 GL000252.2 HAVANA gene 2833859 2836646 2296.0 + 0 ENSG00000223465.8 protein_coding LST1 2 OTTHUMG00000148999.2 +730 GL000252.2 HAVANA gene 2836632 2840722 1212.0 - 0 ENSG00000237103.6 protein_coding NCR3 2 OTTHUMG00000149003.2 +731 GL000252.2 HAVANA gene 2858854 2859127 274.0 - 0 ENSG00000232683.1 processed_pseudogene UQCRHP1 2 OTTHUMG00000148996.1 +732 GL000252.2 HAVANA gene 2862951 2864788 1320.0 + 0 ENSG00000234836.7 protein_coding AIF1 2 OTTHUMG00000149005.1 +733 GL000252.2 ENSEMBL gene 2870846 2870977 132.0 + 0 ENSG00000266004.1 snoRNA SNORA38 3 +734 GL000252.2 HAVANA gene 2868484 2885535 9115.0 + 0 ENSG00000231370.9 protein_coding PRRC2A 2 OTTHUMG00000149000.1 ncRNA_host +735 GL000252.2 HAVANA gene 2886791 2900476 5336.0 - 0 ENSG00000227761.10 protein_coding BAG6 2 OTTHUMG00000149124.3 +736 GL000252.2 HAVANA gene 2900187 2905981 1237.0 + 0 ENSG00000227567.7 protein_coding APOM 2 OTTHUMG00000149006.2 +737 GL000252.2 HAVANA gene 2906100 2908492 673.0 + 0 ENSG00000227665.1 processed_transcript C6orf47-AS1 2 OTTHUMG00000148992.1 +738 GL000252.2 HAVANA gene 2906069 2908543 2475.0 - 0 ENSG00000228435.2 protein_coding C6orf47 2 OTTHUMG00000149008.1 +739 GL000252.2 ENSEMBL gene 2911059 2911172 114.0 + 0 ENSG00000264353.1 misc_RNA RF00019 3 +740 GL000252.2 HAVANA gene 2909000 2914055 3529.0 - 0 ENSG00000233210.6 protein_coding GPANK1 2 OTTHUMG00000149001.4 +741 GL000252.2 HAVANA gene 2913007 2920118 4277.0 + 0 ENSG00000230700.10 protein_coding CSNK2B 2 OTTHUMG00000148994.2 overlapping_locus +742 GL000252.2 HAVANA gene 2913874 2920222 1427.0 + 0 ENSG00000258589.7 protein_coding CR753842.1 2 OTTHUMG00000171229.1 overlapping_locus +743 GL000252.2 HAVANA gene 2918151 2921548 2819.0 + 0 ENSG00000244672.4 protein_coding LY6G5B 2 OTTHUMG00000149123.2 overlapping_locus +744 GL000252.2 HAVANA gene 2924456 2931813 2828.0 - 0 ENSG00000226404.9 protein_coding LY6G5C 2 OTTHUMG00000149007.1 +745 GL000252.2 HAVANA gene 2934713 2951180 3850.0 - 0 ENSG00000231488.9 protein_coding ABHD16A 2 OTTHUMG00000149002.2 +746 GL000252.2 HAVANA gene 2954649 2958359 920.0 + 0 ENSG00000243003.3 protein_coding LY6G6F 2 OTTHUMG00000149012.1 overlapping_locus +747 GL000252.2 HAVANA gene 2960098 2961574 506.0 - 0 ENSG00000237482.8 protein_coding LY6G6E 2 OTTHUMG00000149013.1 +748 GL000252.2 HAVANA gene 2963118 2965566 614.0 + 0 ENSG00000234443.9 protein_coding LY6G6D 2 OTTHUMG00000149126.2 overlapping_locus +749 GL000252.2 HAVANA gene 2954668 2965680 1266.0 + 0 ENSG00000259101.1 protein_coding LY6G6F-LY6G6D 2 OTTHUMG00000171228.1 overlapping_locus +750 GL000252.2 HAVANA gene 2966410 2969607 1103.0 - 0 ENSG00000228859.2 protein_coding LY6G6C 2 OTTHUMG00000149016.2 +751 GL000252.2 HAVANA gene 2966356 2974472 2860.0 + 0 ENSG00000224393.6 protein_coding MPIG6B 2 OTTHUMG00000149011.1 +752 GL000252.2 HAVANA gene 2974799 2978378 2538.0 - 0 ENSG00000227317.6 protein_coding DDAH2 2 OTTHUMG00000149031.2 overlapping_locus +753 GL000252.2 HAVANA gene 2978342 2987529 1942.0 - 0 ENSG00000226248.6 protein_coding CLIC1 2 OTTHUMG00000148998.1 overlapping_locus +754 GL000252.2 ENSEMBL gene 3004725 3004827 103.0 - 0 ENSG00000263896.1 snRNA RF00026 3 +755 GL000252.2 HAVANA gene 2987757 3010450 5343.0 + 0 ENSG00000230293.11 protein_coding MSH5 2 OTTHUMG00000149125.4 overlapping_locus +756 GL000252.2 HAVANA gene 2987786 3012625 4140.0 + 0 ENSG00000266027.8 protein_coding MSH5-SAPCD1 2 OTTHUMG00000179487.3 overlapping_locus +757 GL000252.2 HAVANA gene 3010573 3012625 1557.0 + 0 ENSG00000227074.11 protein_coding SAPCD1 2 OTTHUMG00000149030.1 overlapping_locus +758 GL000252.2 HAVANA gene 3012084 3013362 461.0 - 0 ENSG00000227856.1 processed_transcript SAPCD1-AS1 2 OTTHUMG00000149032.1 +759 GL000252.2 HAVANA gene 3013364 3025068 3638.0 - 0 ENSG00000230048.8 protein_coding VWA7 2 OTTHUMG00000148997.1 +760 GL000252.2 ENSEMBL gene 3026591 3026679 89.0 - 0 ENSG00000266113.1 misc_RNA RF00019 3 +761 GL000252.2 HAVANA gene 3025292 3043727 6081.0 - 0 ENSG00000096171.14 protein_coding VARS 2 OTTHUMG00000149010.2 ncRNA_host +762 GL000252.2 HAVANA gene 3045170 3054759 1119.0 - 0 ENSG00000231502.6 protein_coding LSM2 2 OTTHUMG00000149034.1 +763 GL000252.2 HAVANA gene 3057398 3062844 2544.0 - 0 ENSG00000234258.6 protein_coding HSPA1L 2 OTTHUMG00000149038.1 +764 GL000252.2 HAVANA gene 3063243 3065725 2483.0 + 0 ENSG00000234475.5 protein_coding HSPA1A 2 OTTHUMG00000149037.1 +765 GL000252.2 HAVANA gene 3075514 3078034 2521.0 + 0 ENSG00000231555.4 protein_coding HSPA1B 2 OTTHUMG00000149035.1 +766 GL000252.2 ENSEMBL gene 3083042 3083104 63.0 + 0 ENSG00000264086.1 snoRNA SNORD48 3 +767 GL000252.2 ENSEMBL gene 3084854 3084920 67.0 + 0 ENSG00000265707.1 snoRNA SNORD52 3 +768 GL000252.2 HAVANA gene 3082387 3087544 1803.0 + 0 ENSG00000229300.9 protein_coding C6orf48 2 OTTHUMG00000149033.2 ncRNA_host +769 GL000252.2 HAVANA gene 3105437 3110684 4822.0 - 0 ENSG00000234343.6 protein_coding NEU1 2 OTTHUMG00000149036.2 +770 GL000252.2 HAVANA gene 3110970 3126820 3369.0 - 0 ENSG00000228263.8 protein_coding SLC44A4 2 OTTHUMG00000149039.2 +771 GL000252.2 HAVANA gene 3131535 3131828 223.0 + 0 ENSG00000236903.1 processed_transcript CR388202.1 2 OTTHUMG00000149040.1 +772 GL000252.2 HAVANA gene 3127533 3145461 7289.0 - 0 ENSG00000227333.8 protein_coding EHMT2 2 OTTHUMG00000149046.2 +773 GL000252.2 HAVANA gene 3147381 3149766 1875.0 - 0 ENSG00000234852.2 protein_coding ZBTB12 2 OTTHUMG00000149042.1 +774 GL000252.2 HAVANA gene 3182228 3189502 787.0 - 0 ENSG00000233692.1 processed_transcript C4B-AS1 2 OTTHUMG00000149045.1 +775 GL000252.2 HAVANA gene 3145559 3193454 5543.0 + 0 ENSG00000231543.9 protein_coding C2 2 OTTHUMG00000149041.3 overlapping_locus +776 GL000252.2 HAVANA gene 3193430 3199864 4538.0 + 0 ENSG00000241534.9 protein_coding CFB 2 OTTHUMG00000149098.1 overlapping_locus +777 GL000252.2 HAVANA gene 3199867 3206867 2701.0 - 0 ENSG00000206268.11 protein_coding NELFE 2 OTTHUMG00000149047.2 +778 GL000252.2 HAVANA gene 3206855 3217526 5561.0 + 0 ENSG00000223493.9 protein_coding SKIV2L 2 OTTHUMG00000149048.1 +779 GL000252.2 HAVANA gene 3217585 3220067 2483.0 - 0 ENSG00000236765.6 protein_coding DXO 2 OTTHUMG00000149043.1 +780 GL000252.2 HAVANA gene 3218950 3230594 3849.0 + 0 ENSG00000226257.9 protein_coding STK19 2 OTTHUMG00000149044.2 overlapping_locus +781 GL000252.2 HAVANA gene 3229797 3250455 6923.0 + 0 ENSG00000244207.8 protein_coding C4A 2 OTTHUMG00000149863.1 overlapping_locus +782 GL000252.2 HAVANA gene 3247766 3251295 2079.0 - 0 ENSG00000232565.1 processed_transcript C4A-AS1 2 OTTHUMG00000149049.2 +783 GL000252.2 ENSEMBL gene 3253943 3254879 69.0 - 0 ENSG00000269167.1 protein_coding CR753845.2 3 +784 GL000252.2 HAVANA gene 3253411 3256226 1971.0 + 0 ENSG00000231759.7 transcribed_unprocessed_pseudogene CYP21A1P 2 OTTHUMG00000149053.1 +785 GL000252.2 HAVANA gene 3256389 3260247 2038.0 - 0 ENSG00000248352.1 unprocessed_pseudogene TNXA 2 OTTHUMG00000149051.1 +786 GL000252.2 HAVANA gene 3261045 3261562 211.0 + 0 ENSG00000249480.1 unprocessed_pseudogene STK19B 2 OTTHUMG00000149052.1 +787 GL000252.2 HAVANA gene 3262537 3276826 6919.0 + 0 ENSG00000236625.8 protein_coding C4B 2 OTTHUMG00000149114.1 +788 GL000252.2 HAVANA gene 3274137 3277666 2079.0 - 0 ENSG00000225512.1 processed_transcript CR753845.1 2 OTTHUMG00000149050.2 +789 GL000252.2 HAVANA gene 3279706 3283078 2637.0 + 0 ENSG00000232414.6 protein_coding CYP21A2 2 OTTHUMG00000149057.1 +790 GL000252.2 ENSEMBL gene 3319915 3320035 121.0 - 0 ENSG00000266615.1 rRNA RF00001 3 +791 GL000252.2 HAVANA gene 3282563 3358976 15205.0 - 0 ENSG00000231608.9 protein_coding TNXB 2 OTTHUMG00000149118.3 ncRNA_host,overlapping_locus +792 GL000252.2 HAVANA gene 3356630 3369617 3629.0 - 0 ENSG00000168468.12 protein_coding ATF6B 2 OTTHUMG00000149127.2 overlapping_locus +793 GL000252.2 HAVANA gene 3370071 3371655 1345.0 - 0 ENSG00000224200.2 protein_coding FKBPL 2 OTTHUMG00000149056.1 +794 GL000252.2 HAVANA gene 3389722 3395738 4261.0 - 0 ENSG00000225141.9 protein_coding PRRT1 2 OTTHUMG00000149055.3 +795 GL000252.2 HAVANA gene 3394806 3399697 2531.0 + 0 ENSG00000228116.9 protein_coding PPT2 2 OTTHUMG00000149119.4 +796 GL000252.2 HAVANA gene 3566684 3567643 960.0 + 0 ENSG00000230209.1 processed_pseudogene HNRNPA1P2 2 OTTHUMG00000149064.1 +797 GL000252.2 ENSEMBL gene 3593990 3594096 107.0 + 0 ENSG00000265351.1 snRNA RF00026 3 +798 GL000252.2 HAVANA gene 3534137 3613021 2308.0 - 0 ENSG00000226892.6 protein_coding C6orf10 2 OTTHUMG00000149063.1 +799 GL000252.2 HAVANA gene 3631601 3634777 610.0 + 0 ENSG00000226228.1 processed_transcript HCG23 2 OTTHUMG00000149058.1 +800 GL000252.2 HAVANA gene 3635054 3648208 1470.0 - 0 ENSG00000229741.7 protein_coding BTNL2 2 OTTHUMG00000149059.3 +801 GL000252.2 HAVANA gene 3680147 3685357 1280.0 + 0 ENSG00000228987.9 protein_coding HLA-DRA 2 OTTHUMG00000149060.1 +802 GL000252.2 HAVANA gene 3700110 3713765 343.0 - 0 ENSG00000237591.1 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000149061.1 +803 GL000252.2 HAVANA gene 3726003 3726098 96.0 - 0 ENSG00000235577.2 unprocessed_pseudogene CR759837.1 2 OTTHUMG00000149902.1 +804 GL000252.2 HAVANA gene 3767141 3767548 408.0 - 0 ENSG00000234470.1 processed_pseudogene CR753841.1 2 OTTHUMG00000149839.1 +805 GL000252.2 HAVANA gene 3772703 3773834 1132.0 + 0 ENSG00000235391.1 processed_pseudogene CR753841.2 2 OTTHUMG00000149840.1 +806 GL000252.2 HAVANA gene 3769856 3789002 797.0 - 0 ENSG00000233240.1 unprocessed_pseudogene CR753309.1 2 OTTHUMG00000149062.2 +807 GL000252.2 ENSEMBL gene 3812002 3812150 149.0 - 0 ENSG00000265983.1 snRNA RF00003 3 +808 GL000252.2 HAVANA gene 3814543 3848645 1381.0 - 0 ENSG00000236884.8 protein_coding HLA-DRB1 2 OTTHUMG00000149068.2 +809 GL000252.2 HAVANA gene 3872103 3894456 10538.0 + 0 ENSG00000236418.8 protein_coding HLA-DQA1 2 OTTHUMG00000149069.5 +810 GL000252.2 HAVANA gene 3900709 3901559 553.0 + 0 ENSG00000237455.1 processed_transcript HLA-DQB1-AS1 2 OTTHUMG00000149070.1 +811 GL000252.2 HAVANA gene 3900715 3903303 310.0 - 0 ENSG00000240684.1 processed_transcript CR753846.2 2 OTTHUMG00000149066.1 overlapping_locus +812 GL000252.2 HAVANA gene 3900296 3910237 5014.0 - 0 ENSG00000233209.6 protein_coding HLA-DQB1 2 OTTHUMG00000149067.4 overlapping_locus +813 GL000252.2 HAVANA gene 3950727 3951559 833.0 - 0 ENSG00000236629.1 unprocessed_pseudogene MTCO3P1 2 OTTHUMG00000149074.1 +814 GL000252.2 HAVANA gene 3962111 3962945 449.0 + 0 ENSG00000234331.1 processed_transcript CR753846.1 2 OTTHUMG00000149071.1 +815 GL000252.2 HAVANA gene 3975518 3976454 356.0 - 0 ENSG00000231596.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000149073.1 +816 GL000252.2 HAVANA gene 3986113 3991965 1500.0 + 0 ENSG00000223793.7 protein_coding HLA-DQA2 2 OTTHUMG00000149072.2 +817 GL000252.2 HAVANA gene 4000854 4008293 2030.0 - 0 ENSG00000228813.9 protein_coding HLA-DQB2 2 OTTHUMG00000149076.3 +818 GL000252.2 HAVANA gene 4056481 4060766 1858.0 - 0 ENSG00000243496.6 protein_coding HLA-DOB 2 OTTHUMG00000149075.3 +819 GL000252.2 HAVANA gene 4065551 4082348 6212.0 - 0 ENSG00000223481.9 protein_coding TAP2 2 OTTHUMG00000149079.3 +820 GL000252.2 HAVANA gene 4084287 4088273 2006.0 - 0 ENSG00000230034.8 protein_coding PSMB8 2 OTTHUMG00000149080.1 +821 GL000252.2 HAVANA gene 4087656 4090065 1951.0 + 0 ENSG00000206232.8 processed_transcript PSMB8-AS1 2 OTTHUMG00000149081.1 overlapping_locus +822 GL000252.2 HAVANA gene 4088779 4097548 4576.0 - 0 ENSG00000224212.4 protein_coding TAP1 2 OTTHUMG00000149101.1 +823 GL000252.2 HAVANA gene 4087706 4123110 3309.0 + 0 ENSG00000240118.7 protein_coding PSMB9 2 OTTHUMG00000149102.3 overlapping_locus +824 GL000252.2 HAVANA gene 4122694 4123371 678.0 - 0 ENSG00000227435.1 transcribed_processed_pseudogene PPP1R2P1 2 OTTHUMG00000149100.1 +825 GL000252.2 HAVANA gene 4139934 4140008 75.0 + 0 ENSG00000237871.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000149099.1 +826 GL000252.2 HAVANA gene 4192143 4196655 2144.0 - 0 ENSG00000241394.7 protein_coding HLA-DMA 2 OTTHUMG00000149104.4 overlapping_locus +827 GL000252.2 HAVANA gene 4178158 4196655 4829.0 - 0 ENSG00000226264.10 protein_coding HLA-DMB 2 OTTHUMG00000149103.2 overlapping_locus +828 GL000252.2 HAVANA gene 4221380 4225039 2788.0 + 0 ENSG00000230678.10 protein_coding BRD2 2 OTTHUMG00000149117.3 +829 GL000252.2 HAVANA gene 4247719 4253152 4011.0 - 0 ENSG00000235744.11 protein_coding HLA-DOA 2 OTTHUMG00000149105.3 +830 GL000252.2 HAVANA gene 4322982 4323391 410.0 + 0 ENSG00000226879.1 processed_pseudogene RPL32P1 2 OTTHUMG00000149107.1 overlapping_locus +831 GL000252.2 HAVANA gene 4308100 4324306 5748.0 - 0 ENSG00000229685.8 protein_coding HLA-DPA1 2 OTTHUMG00000149106.3 +832 GL000252.2 HAVANA gene 4319457 4330724 2791.0 + 0 ENSG00000237710.10 protein_coding HLA-DPB1 2 OTTHUMG00000149113.1 overlapping_locus +833 GL000252.2 HAVANA gene 4335276 4340818 733.0 - 0 ENSG00000223894.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000149111.1 +834 GL000252.2 HAVANA gene 4347291 4347494 99.0 - 0 ENSG00000232802.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000149108.1 +835 GL000252.2 HAVANA gene 4371316 4372582 412.0 + 0 ENSG00000225429.1 unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000149109.1 +836 GL000252.2 HAVANA gene 4374714 4386823 229.0 - 0 ENSG00000223696.1 unprocessed_pseudogene HLA-DPA3 2 OTTHUMG00000149112.1 +837 GL000252.2 HAVANA gene 4388285 4391269 717.0 + 0 ENSG00000230134.1 processed_transcript HCG24 2 OTTHUMG00000149110.1 +838 GL000252.2 HAVANA gene 4406180 4435998 6740.0 - 0 ENSG00000230930.8 protein_coding COL11A2 2 OTTHUMG00000149078.4 +839 GL000252.2 ENSEMBL gene 4443100 4443195 96.0 + 0 ENSG00000266410.2 misc_RNA RF00019 3 +840 GL000252.2 HAVANA gene 4437087 4444187 3920.0 - 0 ENSG00000228333.9 protein_coding RXRB 2 OTTHUMG00000149077.3 +841 GL000252.2 HAVANA gene 4443944 4447938 2845.0 + 0 ENSG00000229802.11 protein_coding SLC39A7 2 OTTHUMG00000149082.2 +842 GL000252.2 HAVANA gene 4448141 4450330 1171.0 + 0 ENSG00000225312.2 protein_coding HSD17B8 2 OTTHUMG00000149083.1 +843 GL000252.2 HAVANA gene 4451994 4456221 1818.0 + 0 ENSG00000228520.3 protein_coding RING1 2 OTTHUMG00000149089.1 +844 GL000252.2 HAVANA gene 4459204 4459827 624.0 + 0 ENSG00000229394.1 processed_pseudogene ZNF70P1 2 OTTHUMG00000149085.1 +845 GL000252.2 HAVANA gene 4481303 4483194 984.0 + 0 ENSG00000224052.1 processed_pseudogene HTATSF1P1 2 OTTHUMG00000149088.1 +846 GL000252.2 HAVANA gene 4493046 4498501 1374.0 + 0 ENSG00000233772.5 processed_transcript HCG25 2 OTTHUMG00000149086.1 +847 GL000252.2 HAVANA gene 4493784 4515561 4503.0 - 0 ENSG00000228425.9 protein_coding VPS52 2 OTTHUMG00000149087.1 +848 GL000252.2 HAVANA gene 4515524 4520024 1898.0 + 0 ENSG00000223367.6 protein_coding RPS18 2 OTTHUMG00000149084.2 +849 GL000252.2 HAVANA gene 4520646 4522339 1694.0 + 0 ENSG00000235155.4 protein_coding B3GALT4 2 OTTHUMG00000149091.1 +850 GL000252.2 HAVANA gene 4522622 4533045 3115.0 - 0 ENSG00000226916.8 protein_coding WDR46 2 OTTHUMG00000149090.2 +851 GL000252.2 HAVANA gene 4532820 4541919 2953.0 + 0 ENSG00000224782.8 protein_coding PFDN6 2 OTTHUMG00000149092.1 +852 GL000252.2 HAVANA gene 4535172 4542842 4541.0 - 0 ENSG00000237825.9 protein_coding RGL2 2 OTTHUMG00000149093.2 +853 GL000252.2 HAVANA gene 4543212 4557902 4998.0 - 0 ENSG00000236490.9 protein_coding TAPBP 2 OTTHUMG00000149094.2 +854 GL000252.2 HAVANA gene 4557933 4561457 2715.0 - 0 ENSG00000227780.5 protein_coding ZBTB22 2 OTTHUMG00000149095.3 +855 GL000252.2 HAVANA gene 4562073 4572783 3666.0 - 0 ENSG00000206206.11 protein_coding DAXX 2 OTTHUMG00000149096.3 +856 GL000252.2 HAVANA gene 4582494 4583011 518.0 + 0 ENSG00000229342.3 processed_pseudogene MYL8P 2 OTTHUMG00000149097.1 +857 GL000253.2 HAVANA gene 49216 49587 372.0 - 0 ENSG00000273083.1 processed_pseudogene NOP56P1 2 OTTHUMG00000149129.1 +858 GL000253.2 HAVANA gene 103431 104568 709.0 - 0 ENSG00000273040.1 processed_transcript BX908720.1 2 OTTHUMG00000149131.1 +859 GL000253.2 HAVANA gene 126974 127605 632.0 + 0 ENSG00000273286.1 processed_pseudogene RPL13P 2 OTTHUMG00000149132.1 +860 GL000253.2 HAVANA gene 125183 128908 2458.0 - 0 ENSG00000273200.1 processed_transcript LINC01623 2 OTTHUMG00000149130.1 +861 GL000253.2 ENSEMBL gene 181204 181303 100.0 + 0 ENSG00000264777.1 snRNA RF00026 3 +862 GL000253.2 HAVANA gene 180335 189548 1619.0 - 0 ENSG00000237462.10 protein_coding TRIM27 2 OTTHUMG00000149384.3 +863 GL000253.2 HAVANA gene 209439 210099 466.0 + 0 ENSG00000231041.1 protein_coding LINC01556 2 OTTHUMG00000149145.1 +864 GL000253.2 HAVANA gene 234692 236022 1331.0 - 0 ENSG00000226462.1 processed_pseudogene KRT18P1 2 OTTHUMG00000149301.1 +865 GL000253.2 ENSEMBL gene 243035 243333 299.0 + 0 ENSG00000265326.2 misc_RNA RF00017 3 +866 GL000253.2 HAVANA gene 251762 253043 1032.0 + 0 ENSG00000233035.2 processed_transcript HCG15 2 OTTHUMG00000149134.1 overlapping_locus +867 GL000253.2 HAVANA gene 252359 254095 317.0 + 0 ENSG00000240111.1 processed_transcript BX927167.1 2 OTTHUMG00000149133.1 overlapping_locus +868 GL000253.2 HAVANA gene 260343 270874 3176.0 - 0 ENSG00000235589.4 protein_coding ZNF311 2 OTTHUMG00000149299.1 +869 GL000253.2 HAVANA gene 292238 293165 928.0 - 0 ENSG00000232781.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000149302.1 +870 GL000253.2 HAVANA gene 309771 310798 1028.0 - 0 ENSG00000228652.1 protein_coding OR2W1 2 OTTHUMG00000149298.3 +871 GL000253.2 HAVANA gene 337381 338156 776.0 - 0 ENSG00000233019.1 unprocessed_pseudogene OR2P1P 2 OTTHUMG00000149303.1 +872 GL000253.2 ENSEMBL gene 329554 342081 414.0 + 0 ENSG00000277403.1 protein_coding CR547123.1 3 +873 GL000253.2 HAVANA gene 342130 342725 596.0 - 0 ENSG00000227529.1 processed_pseudogene SAR1AP1 2 OTTHUMG00000149385.1 +874 GL000253.2 HAVANA gene 351865 352871 1007.0 - 0 ENSG00000231319.3 protein_coding OR2B3 2 OTTHUMG00000149300.3 +875 GL000253.2 HAVANA gene 366508 367446 939.0 + 0 ENSG00000225441.1 unprocessed_pseudogene OR2J1 2 OTTHUMG00000149135.2 +876 GL000253.2 HAVANA gene 377450 378385 936.0 + 0 ENSG00000233636.1 protein_coding OR2J3 2 OTTHUMG00000149137.2 +877 GL000253.2 HAVANA gene 389769 394466 389.0 + 0 ENSG00000231960.1 processed_transcript BX927132.2 2 OTTHUMG00000149371.1 +878 GL000253.2 HAVANA gene 403434 404370 937.0 - 0 ENSG00000228846.2 unprocessed_pseudogene BX927132.1 2 OTTHUMG00000149136.1 +879 GL000253.2 HAVANA gene 438866 440137 1272.0 + 0 ENSG00000226347.4 protein_coding OR2J2 2 OTTHUMG00000149144.3 +880 GL000253.2 HAVANA gene 447085 448020 936.0 + 0 ENSG00000230136.2 unprocessed_pseudogene OR2J4P 2 OTTHUMG00000149139.1 +881 GL000253.2 HAVANA gene 480836 481779 944.0 + 0 ENSG00000231919.1 unprocessed_pseudogene BX908738.3 2 OTTHUMG00000149140.1 +882 GL000253.2 HAVANA gene 494827 495757 931.0 - 0 ENSG00000231320.1 unprocessed_pseudogene OR2G1P 2 OTTHUMG00000149143.1 +883 GL000253.2 HAVANA gene 528277 529653 879.0 - 0 ENSG00000236918.1 unprocessed_pseudogene OR2U1P 2 OTTHUMG00000149142.1 +884 GL000253.2 HAVANA gene 489573 532659 464.0 + 0 ENSG00000225188.1 processed_transcript BX908738.1 2 OTTHUMG00000149138.1 +885 GL000253.2 HAVANA gene 534036 534995 960.0 - 0 ENSG00000249415.1 unprocessed_pseudogene OR2U2P 2 OTTHUMG00000149141.1 +886 GL000253.2 HAVANA gene 556303 557245 943.0 + 0 ENSG00000227178.2 unprocessed_pseudogene BX908738.2 2 OTTHUMG00000149148.1 +887 GL000253.2 HAVANA gene 572292 573257 966.0 + 0 ENSG00000234100.4 protein_coding OR14J1 2 OTTHUMG00000149147.2 +888 GL000253.2 HAVANA gene 595229 596664 1436.0 - 0 ENSG00000225927.1 processed_pseudogene DDX6P1 2 OTTHUMG00000149149.1 +889 GL000253.2 HAVANA gene 661700 662768 1069.0 + 0 ENSG00000233481.4 protein_coding OR12D2 2 OTTHUMG00000149146.2 +890 GL000253.2 HAVANA gene 682418 683364 852.0 + 0 ENSG00000248182.1 unprocessed_pseudogene OR12D1 2 OTTHUMG00000149150.1 +891 GL000253.2 HAVANA gene 620834 697102 1335.0 - 0 ENSG00000243441.6 protein_coding OR5V1 2 OTTHUMG00000149152.2 overlapping_locus +892 GL000253.2 HAVANA gene 704441 706112 1672.0 + 0 ENSG00000232397.5 protein_coding OR10C1 2 OTTHUMG00000149159.3 +893 GL000253.2 HAVANA gene 638713 715227 2011.0 - 0 ENSG00000224487.8 protein_coding OR12D3 2 OTTHUMG00000149158.1 overlapping_locus +894 GL000253.2 HAVANA gene 690640 722195 2864.0 - 0 ENSG00000237258.8 protein_coding OR11A1 2 OTTHUMG00000149153.1 overlapping_locus +895 GL000253.2 HAVANA gene 722305 729453 3708.0 + 0 ENSG00000224395.8 protein_coding OR2H1 2 OTTHUMG00000149157.1 +896 GL000253.2 HAVANA gene 729721 734931 381.0 - 0 ENSG00000226365.1 unprocessed_pseudogene UBDP1 2 OTTHUMG00000149155.1 +897 GL000253.2 HAVANA gene 740150 741196 1047.0 - 0 ENSG00000230957.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000149151.1 +898 GL000253.2 HAVANA gene 751891 753027 1137.0 - 0 ENSG00000228377.3 protein_coding MAS1L 2 OTTHUMG00000149156.2 +899 GL000253.2 HAVANA gene 754397 754802 406.0 - 0 ENSG00000228840.3 processed_pseudogene RPS17P1 2 OTTHUMG00000149154.1 +900 GL000253.2 HAVANA gene 762635 775681 877.0 + 0 ENSG00000228370.1 processed_transcript BX927133.1 2 OTTHUMG00000149160.1 +901 GL000253.2 HAVANA gene 794551 798699 2777.0 + 0 ENSG00000225426.5 processed_transcript LINC01015 2 OTTHUMG00000149161.1 +902 GL000253.2 HAVANA gene 802835 803918 1084.0 - 0 ENSG00000237811.1 unprocessed_pseudogene GPR53P 2 OTTHUMG00000149173.1 +903 GL000253.2 HAVANA gene 818377 819324 948.0 + 0 ENSG00000223441.2 unprocessed_pseudogene OR2I1P 2 OTTHUMG00000149264.1 +904 GL000253.2 HAVANA gene 820771 825085 990.0 - 0 ENSG00000224654.2 protein_coding UBD 2 OTTHUMG00000149260.1 overlapping_locus +905 GL000253.2 HAVANA gene 839092 840019 928.0 + 0 ENSG00000225034.2 unprocessed_pseudogene OR2H5P 2 OTTHUMG00000149262.1 +906 GL000253.2 HAVANA gene 842643 842932 290.0 + 0 ENSG00000224241.2 processed_pseudogene TMEM183AP1 2 OTTHUMG00000149265.1 +907 GL000253.2 ENSEMBL gene 847433 847516 84.0 + 0 ENSG00000265663.1 snoRNA SNORD32B 3 +908 GL000253.2 HAVANA gene 847692 848209 518.0 + 0 ENSG00000224146.1 processed_pseudogene RPL13AP 2 OTTHUMG00000149259.1 +909 GL000253.2 HAVANA gene 852639 854222 1584.0 + 0 ENSG00000227044.4 protein_coding OR2H2 2 OTTHUMG00000149257.1 +910 GL000253.2 HAVANA gene 820771 898309 7011.0 - 0 ENSG00000237051.8 protein_coding GABBR1 2 OTTHUMG00000149256.1 overlapping_locus +911 GL000253.2 HAVANA gene 901182 901465 284.0 - 0 ENSG00000228130.3 processed_pseudogene SUMO2P1 2 OTTHUMG00000149258.1 +912 GL000253.2 HAVANA gene 922098 937486 3054.0 + 0 ENSG00000230885.9 protein_coding MOG 2 OTTHUMG00000149261.1 +913 GL000253.2 HAVANA gene 937506 946215 2149.0 - 0 ENSG00000232099.7 protein_coding ZFP57 2 OTTHUMG00000149263.1 +914 GL000253.2 HAVANA gene 973224 973646 423.0 - 0 ENSG00000226303.1 processed_pseudogene ZDHHC20P1 2 OTTHUMG00000149162.1 +915 GL000253.2 HAVANA gene 985643 986633 991.0 - 0 ENSG00000229573.1 unprocessed_pseudogene BX927250.1 2 OTTHUMG00000149179.1 +916 GL000253.2 HAVANA gene 989333 989803 471.0 - 0 ENSG00000242039.1 transcribed_processed_pseudogene RPL23AP1 2 OTTHUMG00000149163.1 overlapping_locus +917 GL000253.2 HAVANA gene 985437 1001192 4340.0 + 0 ENSG00000237508.10 protein_coding HLA-F 2 OTTHUMG00000149164.3 +918 GL000253.2 HAVANA gene 1010954 1011178 225.0 + 0 ENSG00000228900.1 unprocessed_pseudogene BX927182.1 2 OTTHUMG00000149167.1 +919 GL000253.2 HAVANA gene 1004394 1011634 1157.0 - 0 ENSG00000250154.1 transcribed_unprocessed_pseudogene MICE 2 OTTHUMG00000149166.1 overlapping_locus +920 GL000253.2 HAVANA gene 989265 1011714 4172.0 - 0 ENSG00000226378.8 processed_transcript HLA-F-AS1 2 OTTHUMG00000149169.1 overlapping_locus +921 GL000253.2 ENSEMBL gene 1013035 1013136 102.0 + 0 ENSG00000264495.1 misc_RNA RF00019 3 +922 GL000253.2 HAVANA gene 1013391 1013811 421.0 - 0 ENSG00000233023.1 processed_pseudogene IFITM4P 2 OTTHUMG00000149168.1 +923 GL000253.2 HAVANA gene 1054329 1055326 998.0 - 0 ENSG00000226379.4 unprocessed_pseudogene HCG4 2 OTTHUMG00000149191.1 +924 GL000253.2 HAVANA gene 1053436 1060310 5646.0 + 0 ENSG00000224736.7 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000149170.2 +925 GL000253.2 HAVANA gene 1062914 1064922 734.0 + 0 ENSG00000261134.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172785.1 +926 GL000253.2 HAVANA gene 1065694 1066490 797.0 - 0 ENSG00000233465.2 processed_pseudogene RPL7AP7 2 OTTHUMG00000149171.1 +927 GL000253.2 HAVANA gene 1075063 1075194 132.0 - 0 ENSG00000229461.1 unprocessed_pseudogene MICG 2 OTTHUMG00000149172.1 +928 GL000253.2 HAVANA gene 1089871 1090850 980.0 - 0 ENSG00000224801.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000149181.1 +929 GL000253.2 HAVANA gene 1089454 1093611 1763.0 + 0 ENSG00000235680.8 protein_coding HLA-G 2 OTTHUMG00000149372.2 +930 GL000253.2 HAVANA gene 1114489 1114617 129.0 - 0 ENSG00000235498.1 unprocessed_pseudogene BX927141.2 2 OTTHUMG00000149175.1 +931 GL000253.2 HAVANA gene 1143746 1144708 963.0 - 0 ENSG00000231197.1 unprocessed_pseudogene BX927141.1 2 OTTHUMG00000149184.1 +932 GL000253.2 HAVANA gene 1144204 1146920 1082.0 + 0 ENSG00000223463.3 unprocessed_pseudogene HLA-H 2 OTTHUMG00000149174.1 +933 GL000253.2 HAVANA gene 1152988 1154119 450.0 + 0 ENSG00000226727.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000149185.1 +934 GL000253.2 HAVANA gene 1162877 1163243 192.0 + 0 ENSG00000225926.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000149180.1 +935 GL000253.2 HAVANA gene 1164117 1164979 328.0 - 0 ENSG00000226940.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000149182.1 +936 GL000253.2 HAVANA gene 1182347 1183337 991.0 - 0 ENSG00000226563.3 unprocessed_pseudogene HCG4B 2 OTTHUMG00000149193.1 +937 GL000253.2 HAVANA gene 1182823 1185596 1034.0 + 0 ENSG00000232816.1 unprocessed_pseudogene HLA-K 2 OTTHUMG00000149192.1 +938 GL000253.2 HAVANA gene 1188708 1188893 186.0 + 0 ENSG00000226354.1 unprocessed_pseudogene HLA-U 2 OTTHUMG00000149189.1 +939 GL000253.2 HAVANA gene 1196617 1197608 992.0 - 0 ENSG00000226109.1 unprocessed_pseudogene CR382333.1 2 OTTHUMG00000149186.1 +940 GL000253.2 HAVANA gene 1195801 1200442 2708.0 + 0 ENSG00000231834.10 protein_coding HLA-A 2 OTTHUMG00000149177.2 +941 GL000253.2 HAVANA gene 1217355 1219320 773.0 + 0 ENSG00000230915.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000149188.2 +942 GL000253.2 HAVANA gene 1231535 1233198 813.0 - 0 ENSG00000230745.1 unprocessed_pseudogene MICD 2 OTTHUMG00000149187.1 +943 GL000253.2 HAVANA gene 1235852 1239146 656.0 + 0 ENSG00000227647.2 processed_transcript HCG9 2 OTTHUMG00000149190.1 +944 GL000253.2 HAVANA gene 1253935 1254331 258.0 + 0 ENSG00000224362.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000149183.1 +945 GL000253.2 HAVANA gene 1255163 1256040 335.0 - 0 ENSG00000231745.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000149176.1 +946 GL000253.2 HAVANA gene 1266852 1267847 996.0 - 0 ENSG00000225086.1 unprocessed_pseudogene BX927229.1 2 OTTHUMG00000149178.1 overlapping_locus +947 GL000253.2 HAVANA gene 1267314 1270687 1634.0 + 0 ENSG00000223439.7 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000149194.1 +948 GL000253.2 HAVANA gene 1292463 1293753 984.0 + 0 ENSG00000224108.1 processed_pseudogene ETF1P1 2 OTTHUMG00000149270.1 +949 GL000253.2 ENSEMBL gene 1296666 1296733 68.0 + 0 ENSG00000278049.1 misc_RNA RF02218 3 +950 GL000253.2 ENSEMBL gene 1318872 1318947 76.0 + 0 ENSG00000277415.1 misc_RNA RF02219 3 +951 GL000253.2 ENSEMBL gene 1321834 1321937 104.0 + 0 ENSG00000277085.1 misc_RNA RF02220 3 +952 GL000253.2 HAVANA gene 1261741 1322394 20815.0 - 0 ENSG00000235394.6 processed_transcript ZNRD1ASP 2 OTTHUMG00000149195.1 overlapping_locus +953 GL000253.2 HAVANA gene 1319656 1325658 3669.0 + 0 ENSG00000235176.6 protein_coding ZNRD1 2 OTTHUMG00000149276.1 ncRNA_host +954 GL000253.2 HAVANA gene 1327458 1331083 2421.0 + 0 ENSG00000236560.6 protein_coding PPP1R11 2 OTTHUMG00000149273.3 +955 GL000253.2 HAVANA gene 1331016 1336637 2206.0 - 0 ENSG00000237733.8 protein_coding RNF39 2 OTTHUMG00000149271.1 +956 GL000253.2 HAVANA gene 1363614 1373816 3537.0 - 0 ENSG00000225130.9 protein_coding TRIM31 2 OTTHUMG00000149274.1 +957 GL000253.2 HAVANA gene 1365957 1375434 549.0 + 0 ENSG00000237050.1 processed_transcript TRIM31-AS1 2 OTTHUMG00000149197.1 +958 GL000253.2 ENSEMBL gene 1443522 1443683 162.0 - 0 ENSG00000263589.1 snoRNA RF00554 3 +959 GL000253.2 HAVANA gene 1446830 1459457 2497.0 + 0 ENSG00000237046.8 protein_coding TRIM40 2 OTTHUMG00000149272.1 +960 GL000253.2 HAVANA gene 1462667 1471655 3546.0 - 0 ENSG00000235025.8 protein_coding TRIM10 2 OTTHUMG00000149275.1 +961 GL000253.2 HAVANA gene 1473908 1483398 2515.0 + 0 ENSG00000233599.8 protein_coding TRIM15 2 OTTHUMG00000149196.2 +962 GL000253.2 HAVANA gene 1497456 1499277 1203.0 - 0 ENSG00000226175.1 processed_pseudogene PAIP1P1 2 OTTHUMG00000149198.1 overlapping_locus +963 GL000253.2 HAVANA gene 1495111 1524080 4378.0 - 0 ENSG00000231002.7 protein_coding TRIM26 2 OTTHUMG00000149377.3 overlapping_locus +964 GL000253.2 HAVANA gene 1548946 1552507 753.0 + 0 ENSG00000231928.1 unprocessed_pseudogene TRIM26BP 2 OTTHUMG00000149199.1 +965 GL000253.2 HAVANA gene 1569834 1577184 4769.0 + 0 ENSG00000239618.6 transcribed_unprocessed_pseudogene HLA-L 2 OTTHUMG00000149208.1 +966 GL000253.2 HAVANA gene 1544684 1636359 759.0 - 0 ENSG00000240924.5 processed_transcript HCG17 2 OTTHUMG00000149213.1 overlapping_locus +967 GL000253.2 HAVANA gene 1601038 1637375 5637.0 - 0 ENSG00000230660.6 processed_transcript HCG18 2 OTTHUMG00000149203.1 overlapping_locus +968 GL000253.2 HAVANA gene 1636704 1653960 4226.0 + 0 ENSG00000226437.10 protein_coding TRIM39 2 OTTHUMG00000149211.2 +969 GL000253.2 HAVANA gene 1639537 1657118 2719.0 + 0 ENSG00000239865.6 protein_coding RPP21 2 OTTHUMG00000149201.2 +970 GL000253.2 HAVANA gene 1661650 1661784 135.0 + 0 ENSG00000234095.1 unprocessed_pseudogene HLA-N 2 OTTHUMG00000149202.1 +971 GL000253.2 HAVANA gene 1669513 1670146 634.0 - 0 ENSG00000236422.1 processed_pseudogene BX927214.1 2 OTTHUMG00000149204.1 +972 GL000253.2 HAVANA gene 1673345 1674513 1169.0 - 0 ENSG00000231659.1 processed_pseudogene UBQLN1P1 2 OTTHUMG00000149206.1 +973 GL000253.2 HAVANA gene 1724952 1729556 1055.0 + 0 ENSG00000229187.1 unprocessed_pseudogene MICC 2 OTTHUMG00000149210.1 +974 GL000253.2 HAVANA gene 1776687 1778229 1267.0 + 0 ENSG00000233700.1 processed_pseudogene TMPOP1 2 OTTHUMG00000149212.1 +975 GL000253.2 HAVANA gene 1779117 1780486 1370.0 + 0 ENSG00000227754.3 processed_pseudogene SUCLA2P1 2 OTTHUMG00000149200.1 +976 GL000253.2 HAVANA gene 1796175 1796825 651.0 + 0 ENSG00000224554.2 processed_pseudogene RANP1 2 OTTHUMG00000149207.1 +977 GL000253.2 HAVANA gene 1799702 1804440 2975.0 + 0 ENSG00000236632.5 protein_coding HLA-E 2 OTTHUMG00000149205.1 +978 GL000253.2 HAVANA gene 1826487 1829438 851.0 + 0 ENSG00000235801.1 processed_transcript LINC02569 2 OTTHUMG00000149304.1 +979 GL000253.2 HAVANA gene 1851606 1867403 8646.0 - 0 ENSG00000232143.9 protein_coding GNL1 2 OTTHUMG00000149306.2 +980 GL000253.2 HAVANA gene 1867115 1873952 4281.0 + 0 ENSG00000223766.10 protein_coding PRR3 2 OTTHUMG00000149307.1 +981 GL000253.2 HAVANA gene 1881605 1907409 4338.0 + 0 ENSG00000231129.8 protein_coding ABCF1 2 OTTHUMG00000149310.1 +982 GL000253.2 HAVANA gene 1910629 1928841 5215.0 - 0 ENSG00000231737.7 protein_coding PPP1R10 2 OTTHUMG00000149305.1 +983 GL000253.2 HAVANA gene 1927938 1936624 1888.0 + 0 ENSG00000226111.8 protein_coding MRPS18B 2 OTTHUMG00000149309.1 +984 GL000253.2 HAVANA gene 1943861 1944127 267.0 + 0 ENSG00000223851.4 processed_pseudogene PTMAP1 2 OTTHUMG00000149308.1 overlapping_locus +985 GL000253.2 HAVANA gene 1937071 1957052 4035.0 + 0 ENSG00000235658.8 protein_coding ATAT1 2 OTTHUMG00000149311.1 overlapping_locus +986 GL000253.2 HAVANA gene 1957268 1963333 1863.0 + 0 ENSG00000233164.9 protein_coding C6orf136 2 OTTHUMG00000149209.1 +987 GL000253.2 HAVANA gene 1963343 1983290 4008.0 - 0 ENSG00000233049.6 protein_coding DHX16 2 OTTHUMG00000149223.2 +988 GL000253.2 HAVANA gene 1986642 1998148 4599.0 - 0 ENSG00000229998.8 protein_coding PPP1R18 2 OTTHUMG00000149220.1 +989 GL000253.2 HAVANA gene 1998300 2001673 2045.0 - 0 ENSG00000228867.8 protein_coding NRM 2 OTTHUMG00000149230.1 +990 GL000253.2 HAVANA gene 2007058 2007787 730.0 - 0 ENSG00000226494.1 processed_pseudogene RPL7P4 2 OTTHUMG00000149227.1 +991 GL000253.2 HAVANA gene 2013319 2023435 738.0 + 0 ENSG00000224508.1 processed_transcript MDC1-AS1 2 OTTHUMG00000149214.1 +992 GL000253.2 HAVANA gene 2010059 2028140 8064.0 - 0 ENSG00000228575.9 protein_coding MDC1 2 OTTHUMG00000149229.2 +993 GL000253.2 HAVANA gene 2030452 2035677 3359.0 + 0 ENSG00000232575.10 protein_coding TUBB 2 OTTHUMG00000149222.1 +994 GL000253.2 HAVANA gene 2037960 2052984 3093.0 - 0 ENSG00000236271.8 protein_coding FLOT1 2 OTTHUMG00000149221.4 fragmented_locus +995 GL000253.2 HAVANA gene 2053450 2054805 1356.0 - 0 ENSG00000230128.3 protein_coding IER3 2 OTTHUMG00000149228.1 +996 GL000253.2 ENSEMBL gene 2061279 2061530 252.0 + 0 ENSG00000263671.2 misc_RNA RF00017 3 +997 GL000253.2 HAVANA gene 2077067 2102492 1371.0 + 0 ENSG00000228762.5 processed_transcript HCG20 2 OTTHUMG00000149234.1 +998 GL000253.2 HAVANA gene 2108896 2140904 2171.0 - 0 ENSG00000229170.6 processed_transcript CR847861.1 2 OTTHUMG00000149218.1 +999 GL000253.2 HAVANA gene 2149770 2158404 799.0 - 0 ENSG00000231854.1 processed_transcript LINC02570 2 OTTHUMG00000149226.1 +1000 GL000253.2 ENSEMBL gene 2174495 2174797 303.0 + 0 ENSG00000266263.1 misc_RNA RF00100 3 +1001 GL000253.2 HAVANA gene 2177227 2186160 3994.0 - 0 ENSG00000231444.1 processed_transcript DDR1-DT 2 OTTHUMG00000149215.1 +1002 GL000253.2 HAVANA gene 2191217 2210394 5689.0 + 0 ENSG00000234078.10 protein_coding DDR1 2 OTTHUMG00000149219.5 +1003 GL000253.2 HAVANA gene 2218420 2224342 2353.0 + 0 ENSG00000233149.10 protein_coding GTF2H4 2 OTTHUMG00000149225.2 overlapping_locus +1004 GL000253.2 ENSEMBL gene 2224441 2236694 4070.0 + 0 ENSG00000285089.1 protein_coding VARS2 3 +1005 GL000253.2 HAVANA gene 2218478 2236697 8454.0 + 0 ENSG00000223494.10 protein_coding VARS2 2 OTTHUMG00000149224.2 overlapping_locus +1006 GL000253.2 HAVANA gene 2241591 2242413 691.0 - 0 ENSG00000230072.2 protein_coding SFTA2 2 OTTHUMG00000149231.2 +1007 GL000253.2 ENSEMBL gene 2242856 2242947 92.0 - 0 ENSG00000265323.1 misc_RNA RF00019 3 +1008 GL000253.2 HAVANA gene 2293961 2300241 3883.0 + 0 ENSG00000223590.5 protein_coding MUC21 2 OTTHUMG00000149232.2 +1009 GL000253.2 HAVANA gene 2320965 2345917 6019.0 + 0 ENSG00000231474.5 processed_transcript BX927139.1 2 OTTHUMG00000149216.1 +1010 GL000253.2 HAVANA gene 2363962 2370397 2183.0 + 0 ENSG00000237894.6 transcribed_unprocessed_pseudogene HCG22 2 OTTHUMG00000149233.2 +1011 GL000253.2 ENSEMBL gene 2393513 2393612 100.0 + 0 ENSG00000263367.1 snRNA RF00026 3 +1012 GL000253.2 HAVANA gene 2421726 2423062 1140.0 - 0 ENSG00000231624.2 protein_coding C6orf15 2 OTTHUMG00000149238.1 +1013 GL000253.2 HAVANA gene 2425650 2430956 2503.0 - 0 ENSG00000237114.2 protein_coding CDSN 2 OTTHUMG00000149241.2 +1014 GL000253.2 HAVANA gene 2448059 2449875 1152.0 - 0 ENSG00000234605.2 protein_coding PSORS1C2 2 OTTHUMG00000149235.1 +1015 GL000253.2 HAVANA gene 2425264 2450563 4688.0 + 0 ENSG00000231094.8 protein_coding PSORS1C1 2 OTTHUMG00000149236.1 +1016 GL000253.2 HAVANA gene 2451244 2451430 187.0 + 0 ENSG00000225714.1 processed_pseudogene POLR2LP1 2 OTTHUMG00000149237.1 +1017 GL000253.2 HAVANA gene 2452954 2468748 4556.0 - 0 ENSG00000223533.8 protein_coding CCHCR1 2 OTTHUMG00000149378.3 +1018 GL000253.2 HAVANA gene 2469087 2474716 3281.0 + 0 ENSG00000224941.6 protein_coding TCF19 2 OTTHUMG00000149379.2 +1019 GL000253.2 HAVANA gene 2474838 2481213 1880.0 - 0 ENSG00000230336.9 protein_coding POU5F1 2 OTTHUMG00000149239.2 +1020 GL000253.2 ENSEMBL gene 2481082 2483105 108.0 + 0 ENSG00000257215.2 protein_coding CR847794.2 3 +1021 GL000253.2 HAVANA gene 2484255 2488424 593.0 - 0 ENSG00000226422.1 processed_transcript PSORS1C3 2 OTTHUMG00000149242.1 +1022 GL000253.2 HAVANA gene 2508305 2508726 167.0 + 0 ENSG00000238148.2 processed_transcript HCG27 2 OTTHUMG00000149217.1 fragmented_locus +1023 GL000253.2 HAVANA gene 2510714 2511187 474.0 - 0 ENSG00000229823.1 processed_transcript CR847794.1 2 OTTHUMG00000149240.1 +1024 GL000253.2 HAVANA gene 2577801 2581172 2569.0 - 0 ENSG00000237022.10 protein_coding HLA-C 2 OTTHUMG00000149248.5 +1025 GL000253.2 HAVANA gene 2584583 2587755 3173.0 + 0 ENSG00000229265.1 processed_pseudogene USP8P1 2 OTTHUMG00000149253.1 +1026 GL000253.2 HAVANA gene 2589318 2590520 1203.0 + 0 ENSG00000237448.3 processed_pseudogene RPL3P2 2 OTTHUMG00000149252.1 +1027 GL000253.2 HAVANA gene 2596507 2597958 1452.0 - 0 ENSG00000234980.1 processed_pseudogene WASF5P 2 OTTHUMG00000149251.1 +1028 GL000253.2 HAVANA gene 2616799 2617532 306.0 - 0 ENSG00000228954.1 unprocessed_pseudogene BX927178.1 2 OTTHUMG00000149250.1 +1029 GL000253.2 HAVANA gene 2578541 2665857 2743.0 - 0 ENSG00000224608.10 protein_coding HLA-B 2 OTTHUMG00000149247.4 +1030 GL000253.2 HAVANA gene 2674960 2675506 547.0 - 0 ENSG00000233604.1 processed_pseudogene DHFRP2 2 OTTHUMG00000149244.1 +1031 GL000253.2 ENSEMBL gene 2678743 2678849 107.0 + 0 ENSG00000263701.1 snRNA RF00026 3 +1032 GL000253.2 HAVANA gene 2686021 2686622 602.0 + 0 ENSG00000224131.1 processed_pseudogene CR318637.1 2 OTTHUMG00000149245.1 +1033 GL000253.2 HAVANA gene 2689018 2689446 429.0 + 0 ENSG00000226732.1 processed_pseudogene ZDHHC20P2 2 OTTHUMG00000149246.1 +1034 GL000253.2 HAVANA gene 2690681 2690895 53.0 - 0 ENSG00000228179.1 unprocessed_pseudogene HLA-S 2 OTTHUMG00000149249.1 +1035 GL000253.2 ENSEMBL gene 2710743 2710841 99.0 - 0 ENSG00000266747.1 misc_RNA RF00019 3 +1036 GL000253.2 HAVANA gene 2708377 2724826 3835.0 + 0 ENSG00000235233.9 protein_coding MICA 2 OTTHUMG00000149254.2 +1037 GL000253.2 HAVANA gene 2749706 2755003 2140.0 + 0 ENSG00000231836.1 processed_transcript LINC01149 2 OTTHUMG00000149243.1 +1038 GL000253.2 HAVANA gene 2810695 2816200 2503.0 + 0 ENSG00000231372.8 protein_coding MICB 2 OTTHUMG00000149269.2 +1039 GL000253.2 HAVANA gene 2824562 2825373 498.0 - 0 ENSG00000229216.4 processed_pseudogene PPIAP9 2 OTTHUMG00000149266.1 +1040 GL000253.2 HAVANA gene 2833187 2833766 580.0 + 0 ENSG00000236273.1 processed_pseudogene RPL15P4 2 OTTHUMG00000149268.1 +1041 GL000253.2 HAVANA gene 2833790 2835305 955.0 + 0 ENSG00000238238.2 protein_coding MCCD1 2 OTTHUMG00000149267.1 +1042 GL000253.2 ENSEMBL gene 2841445 2841520 76.0 - 0 ENSG00000265116.1 snoRNA SNORD117 3 +1043 GL000253.2 ENSEMBL gene 2846154 2846231 78.0 - 0 ENSG00000265325.1 snoRNA SNORD84 3 +1044 GL000253.2 HAVANA gene 2847357 2848191 527.0 + 0 ENSG00000231647.1 processed_transcript DDX39B-AS1 2 OTTHUMG00000149255.1 +1045 GL000253.2 HAVANA gene 2835292 2851631 7195.0 - 0 ENSG00000225859.10 protein_coding DDX39B 2 OTTHUMG00000149295.5 ncRNA_host,overlapping_locus +1046 GL000253.2 HAVANA gene 2849515 2851897 1652.0 - 0 ENSG00000226850.2 protein_coding ATP6V1G2 2 OTTHUMG00000149291.1 overlapping_locus +1047 GL000253.2 HAVANA gene 2851919 2863876 1779.0 + 0 ENSG00000227565.8 protein_coding NFKBIL1 2 OTTHUMG00000149280.2 +1048 GL000253.2 HAVANA gene 2877095 2879365 1737.0 + 0 ENSG00000231408.8 protein_coding LTA 2 OTTHUMG00000149296.1 +1049 GL000253.2 HAVANA gene 2880608 2883377 1676.0 + 0 ENSG00000228321.3 protein_coding TNF 2 OTTHUMG00000149278.1 +1050 GL000253.2 HAVANA gene 2885596 2887563 926.0 - 0 ENSG00000223448.7 protein_coding LTB 2 OTTHUMG00000149287.1 +1051 GL000253.2 HAVANA gene 2891165 2893950 2294.0 + 0 ENSG00000231048.8 protein_coding LST1 2 OTTHUMG00000149282.2 +1052 GL000253.2 HAVANA gene 2893936 2898026 1212.0 - 0 ENSG00000236979.6 protein_coding NCR3 2 OTTHUMG00000149286.2 +1053 GL000253.2 ENSEMBL gene 2928117 2928248 132.0 + 0 ENSG00000266847.1 snoRNA SNORA38 3 +1054 GL000253.2 HAVANA gene 2925761 2942812 9115.0 + 0 ENSG00000226618.9 protein_coding PRRC2A 2 OTTHUMG00000149283.1 ncRNA_host +1055 GL000253.2 HAVANA gene 2944068 2957751 5332.0 - 0 ENSG00000228760.10 protein_coding BAG6 2 OTTHUMG00000149381.3 +1056 GL000253.2 HAVANA gene 2957462 2963256 1237.0 + 0 ENSG00000231974.6 protein_coding APOM 2 OTTHUMG00000149288.2 +1057 GL000253.2 HAVANA gene 2963375 2965768 673.0 + 0 ENSG00000233169.1 processed_transcript C6orf47-AS1 2 OTTHUMG00000149277.1 +1058 GL000253.2 HAVANA gene 2963344 2965819 2476.0 - 0 ENSG00000228177.2 protein_coding C6orf47 2 OTTHUMG00000149290.2 +1059 GL000253.2 ENSEMBL gene 2968335 2968448 114.0 + 0 ENSG00000264915.1 misc_RNA RF00019 3 +1060 GL000253.2 HAVANA gene 2966276 2971330 3528.0 - 0 ENSG00000223932.6 protein_coding GPANK1 2 OTTHUMG00000149284.3 +1061 GL000253.2 HAVANA gene 2970283 2977393 3349.0 + 0 ENSG00000232960.11 protein_coding CSNK2B 2 OTTHUMG00000149279.1 overlapping_locus +1062 GL000253.2 HAVANA gene 2971149 2977497 1427.0 + 0 ENSG00000258543.7 protein_coding CR354443.1 2 OTTHUMG00000171222.1 overlapping_locus +1063 GL000253.2 HAVANA gene 2975426 2978593 2589.0 + 0 ENSG00000240433.4 protein_coding LY6G5B 2 OTTHUMG00000149380.1 overlapping_locus +1064 GL000253.2 HAVANA gene 2981731 2989087 2828.0 - 0 ENSG00000228883.9 protein_coding LY6G5C 2 OTTHUMG00000149289.1 +1065 GL000253.2 HAVANA gene 2991996 3008464 3850.0 - 0 ENSG00000224552.9 protein_coding ABHD16A 2 OTTHUMG00000149285.2 +1066 GL000253.2 HAVANA gene 3011934 3015647 920.0 + 0 ENSG00000239741.3 protein_coding LY6G6F 2 OTTHUMG00000149293.1 overlapping_locus +1067 GL000253.2 HAVANA gene 3017386 3018862 506.0 - 0 ENSG00000236210.8 protein_coding LY6G6E 2 OTTHUMG00000149294.1 +1068 GL000253.2 HAVANA gene 3020406 3022850 614.0 + 0 ENSG00000225993.9 protein_coding LY6G6D 2 OTTHUMG00000149383.2 overlapping_locus +1069 GL000253.2 HAVANA gene 3011953 3022964 1266.0 + 0 ENSG00000258635.1 protein_coding LY6G6F-LY6G6D 2 OTTHUMG00000171200.1 overlapping_locus +1070 GL000253.2 HAVANA gene 3023694 3026891 1103.0 - 0 ENSG00000235452.2 protein_coding LY6G6C 2 OTTHUMG00000149297.2 +1071 GL000253.2 HAVANA gene 3023640 3031757 2861.0 + 0 ENSG00000228090.6 protein_coding MPIG6B 2 OTTHUMG00000149292.1 +1072 GL000253.2 HAVANA gene 3032085 3035664 2538.0 - 0 ENSG00000233076.6 protein_coding DDAH2 2 OTTHUMG00000149312.2 overlapping_locus +1073 GL000253.2 HAVANA gene 3035628 3044810 1942.0 - 0 ENSG00000226651.6 protein_coding CLIC1 2 OTTHUMG00000149281.1 overlapping_locus +1074 GL000253.2 HAVANA gene 3045038 3052473 1416.0 + 0 ENSG00000230961.10 protein_coding MSH5 2 OTTHUMG00000149382.3 +1075 GL000253.2 HAVANA gene 3162875 3168122 4822.0 - 0 ENSG00000223957.6 protein_coding NEU1 2 OTTHUMG00000149313.2 +1076 GL000253.2 HAVANA gene 3168408 3168651 244.0 - 0 ENSG00000203463.2 processed_transcript SLC44A4 2 OTTHUMG00000149314.1 +1077 GL000253.2 HAVANA gene 3239415 3246691 787.0 - 0 ENSG00000223747.1 processed_transcript C4B-AS1 2 OTTHUMG00000149316.1 +1078 GL000253.2 HAVANA gene 3225156 3250651 5241.0 + 0 ENSG00000204364.10 protein_coding C2 2 OTTHUMG00000149315.3 overlapping_locus +1079 GL000253.2 HAVANA gene 3250627 3255741 3490.0 + 0 ENSG00000204359.9 protein_coding CFB 2 OTTHUMG00000149355.3 overlapping_locus +1080 GL000253.2 ENSEMBL gene 3383514 3383634 121.0 - 0 ENSG00000263418.1 rRNA RF00001 3 +1081 GL000253.2 HAVANA gene 3369799 3403206 7227.0 - 0 ENSG00000236221.9 protein_coding TNXB 2 OTTHUMG00000149375.4 ncRNA_host +1082 GL000253.2 HAVANA gene 3453360 3459374 4261.0 - 0 ENSG00000229488.9 protein_coding PRRT1 2 OTTHUMG00000149317.2 +1083 GL000253.2 HAVANA gene 3469589 3473262 2596.0 + 0 ENSG00000243897.8 protein_coding EGFL8 2 OTTHUMG00000149319.4 overlapping_locus +1084 GL000253.2 HAVANA gene 3458442 3476959 6987.0 + 0 ENSG00000168452.21 protein_coding PPT2 2 OTTHUMG00000149376.6 overlapping_locus +1085 GL000253.2 HAVANA gene 3473193 3483077 3631.0 - 0 ENSG00000227642.9 protein_coding AGPAT1 2 OTTHUMG00000149324.1 +1086 GL000253.2 HAVANA gene 3483335 3485774 1178.0 + 0 ENSG00000228907.5 protein_coding RNF5 2 OTTHUMG00000149318.1 +1087 GL000253.2 HAVANA gene 3485949 3489305 2077.0 - 0 ENSG00000229058.10 protein_coding AGER 2 OTTHUMG00000149320.2 +1088 GL000253.2 HAVANA gene 3489722 3495164 4341.0 - 0 ENSG00000232005.7 protein_coding PBX2 2 OTTHUMG00000149321.2 +1089 GL000253.2 HAVANA gene 3495744 3500501 1854.0 - 0 ENSG00000236697.7 protein_coding GPSM3 2 OTTHUMG00000149322.2 overlapping_locus +1090 GL000253.2 HAVANA gene 3499821 3529069 9743.0 - 0 ENSG00000232339.5 protein_coding NOTCH4 2 OTTHUMG00000149323.2 overlapping_locus +1091 GL000253.2 HAVANA gene 3630215 3631174 960.0 + 0 ENSG00000233160.1 processed_pseudogene HNRNPA1P2 2 OTTHUMG00000149331.1 +1092 GL000253.2 ENSEMBL gene 3657881 3657987 107.0 + 0 ENSG00000266660.1 snRNA RF00026 3 +1093 GL000253.2 HAVANA gene 3597691 3676908 2297.0 - 0 ENSG00000206245.11 protein_coding C6orf10 2 OTTHUMG00000149330.1 +1094 GL000253.2 HAVANA gene 3695502 3698679 611.0 + 0 ENSG00000229903.1 processed_transcript HCG23 2 OTTHUMG00000149325.1 +1095 GL000253.2 HAVANA gene 3698956 3712147 1470.0 - 0 ENSG00000225412.7 protein_coding BTNL2 2 OTTHUMG00000149326.4 +1096 GL000253.2 HAVANA gene 3744059 3749270 1280.0 + 0 ENSG00000226260.9 protein_coding HLA-DRA 2 OTTHUMG00000149327.1 +1097 GL000253.2 HAVANA gene 3764073 3777729 343.0 - 0 ENSG00000234164.2 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000149328.1 +1098 GL000253.2 HAVANA gene 3789961 3790056 96.0 - 0 ENSG00000223359.2 unprocessed_pseudogene CR354545.1 2 OTTHUMG00000149904.1 +1099 GL000253.2 ENSEMBL gene 3815536 3815683 148.0 - 0 ENSG00000265059.1 snRNA RF00003 3 +1100 GL000253.2 HAVANA gene 3820959 3821054 96.0 - 0 ENSG00000224230.1 unprocessed_pseudogene BX927235.1 2 OTTHUMG00000149903.1 +1101 GL000253.2 ENSEMBL gene 3837657 3837800 144.0 - 0 ENSG00000266081.1 snRNA RF00003 3 +1102 GL000253.2 HAVANA gene 3840439 3855387 1172.0 - 0 ENSG00000227826.9 protein_coding HLA-DRB4 2 OTTHUMG00000149332.2 +1103 GL000253.2 ENSEMBL gene 3877084 3877231 148.0 - 0 ENSG00000264640.1 snRNA RF00003 3 +1104 GL000253.2 HAVANA gene 3887010 3889471 355.0 - 0 ENSG00000233853.1 unprocessed_pseudogene BX927235.2 2 OTTHUMG00000149878.1 +1105 GL000253.2 ENSEMBL gene 3938045 3938208 164.0 - 0 ENSG00000265074.1 snRNA RF00003 3 +1106 GL000253.2 HAVANA gene 3940253 3941192 940.0 + 0 ENSG00000238248.4 processed_pseudogene CR933540.4 2 OTTHUMG00000149882.1 +1107 GL000253.2 HAVANA gene 3942699 3943106 408.0 - 0 ENSG00000237120.1 processed_pseudogene CR933540.3 2 OTTHUMG00000149879.1 +1108 GL000253.2 HAVANA gene 3948261 3949391 1131.0 + 0 ENSG00000223844.1 processed_pseudogene CR933540.1 2 OTTHUMG00000149881.1 +1109 GL000253.2 HAVANA gene 3945426 3964587 785.0 - 0 ENSG00000229099.1 unprocessed_pseudogene CR933540.2 2 OTTHUMG00000149880.1 +1110 GL000253.2 ENSEMBL gene 3986410 3986558 149.0 - 0 ENSG00000263871.1 snRNA RF00003 3 +1111 GL000253.2 HAVANA gene 3988943 4023043 1436.0 - 0 ENSG00000229074.8 protein_coding HLA-DRB1 2 OTTHUMG00000149335.3 +1112 GL000253.2 HAVANA gene 4046501 4068866 10550.0 + 0 ENSG00000225890.10 protein_coding HLA-DQA1 2 OTTHUMG00000149336.5 +1113 GL000253.2 HAVANA gene 4077330 4078181 553.0 + 0 ENSG00000238226.1 processed_transcript HLA-DQB1-AS1 2 OTTHUMG00000149337.1 +1114 GL000253.2 HAVANA gene 4077336 4079931 310.0 - 0 ENSG00000242138.1 processed_transcript BX927168.2 2 OTTHUMG00000149333.1 overlapping_locus +1115 GL000253.2 HAVANA gene 4076917 4086211 5369.0 - 0 ENSG00000225824.8 protein_coding HLA-DQB1 2 OTTHUMG00000149334.4 overlapping_locus +1116 GL000253.2 HAVANA gene 4125932 4126762 831.0 - 0 ENSG00000237145.1 unprocessed_pseudogene MTCO3P1 2 OTTHUMG00000149341.1 +1117 GL000253.2 HAVANA gene 4137308 4138138 445.0 + 0 ENSG00000226139.1 processed_transcript BX927168.1 2 OTTHUMG00000149338.1 +1118 GL000253.2 HAVANA gene 4150064 4151000 356.0 - 0 ENSG00000228684.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000149340.1 +1119 GL000253.2 HAVANA gene 4160657 4166218 1201.0 + 0 ENSG00000231823.3 protein_coding HLA-DQA2 2 OTTHUMG00000149339.2 +1120 GL000253.2 HAVANA gene 4175450 4182889 2030.0 - 0 ENSG00000229493.9 protein_coding HLA-DQB2 2 OTTHUMG00000149342.3 +1121 GL000253.2 HAVANA gene 4241186 4258134 6390.0 - 0 ENSG00000206235.8 protein_coding TAP2 2 OTTHUMG00000149345.1 +1122 GL000253.2 HAVANA gene 4260070 4264056 2006.0 - 0 ENSG00000236443.6 protein_coding PSMB8 2 OTTHUMG00000149346.1 +1123 GL000253.2 HAVANA gene 4263439 4265848 1951.0 + 0 ENSG00000231591.6 processed_transcript PSMB8-AS1 2 OTTHUMG00000149347.1 overlapping_locus +1124 GL000253.2 HAVANA gene 4264562 4273331 4578.0 - 0 ENSG00000226173.4 protein_coding TAP1 2 OTTHUMG00000149358.1 +1125 GL000253.2 HAVANA gene 4263489 4298940 3311.0 + 0 ENSG00000239836.7 protein_coding PSMB9 2 OTTHUMG00000149359.3 overlapping_locus +1126 GL000253.2 HAVANA gene 4298524 4299201 678.0 - 0 ENSG00000236488.1 transcribed_processed_pseudogene PPP1R2P1 2 OTTHUMG00000149357.1 +1127 GL000253.2 HAVANA gene 4315765 4315839 75.0 + 0 ENSG00000225459.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000149356.1 +1128 GL000253.2 HAVANA gene 4353997 4372491 4829.0 - 0 ENSG00000239329.8 protein_coding HLA-DMB 2 OTTHUMG00000149360.2 overlapping_locus +1129 GL000253.2 HAVANA gene 4367981 4390100 2675.0 - 0 ENSG00000243189.7 protein_coding HLA-DMA 2 OTTHUMG00000149361.3 overlapping_locus +1130 GL000253.2 HAVANA gene 4389687 4390201 198.0 + 0 ENSG00000236657.1 processed_transcript BX908719.1 2 OTTHUMG00000149373.1 overlapping_locus +1131 GL000253.2 HAVANA gene 4388044 4400883 6957.0 + 0 ENSG00000234704.9 protein_coding BRD2 2 OTTHUMG00000149374.3 overlapping_locus +1132 GL000253.2 HAVANA gene 4423527 4428960 4011.0 - 0 ENSG00000231558.11 protein_coding HLA-DOA 2 OTTHUMG00000149362.3 +1133 GL000253.2 HAVANA gene 4499154 4499563 410.0 + 0 ENSG00000233972.1 processed_pseudogene RPL32P1 2 OTTHUMG00000149364.1 overlapping_locus +1134 GL000253.2 HAVANA gene 4484266 4500478 5748.0 - 0 ENSG00000228163.8 protein_coding HLA-DPA1 2 OTTHUMG00000149363.5 +1135 GL000253.2 HAVANA gene 4495623 4506904 2791.0 + 0 ENSG00000229295.11 protein_coding HLA-DPB1 2 OTTHUMG00000149370.3 overlapping_locus +1136 GL000253.2 HAVANA gene 4511456 4516998 733.0 - 0 ENSG00000235528.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000149368.1 +1137 GL000253.2 HAVANA gene 4523499 4527035 676.0 - 0 ENSG00000226591.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000149365.1 +1138 GL000253.2 HAVANA gene 4532156 4548504 1601.0 + 0 ENSG00000233584.9 transcribed_unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000149366.4 +1139 GL000253.2 HAVANA gene 4550635 4562770 229.0 - 0 ENSG00000234372.1 unprocessed_pseudogene HLA-DPA3 2 OTTHUMG00000149369.1 +1140 GL000253.2 HAVANA gene 4564235 4567219 717.0 + 0 ENSG00000233043.1 processed_transcript HCG24 2 OTTHUMG00000149367.1 +1141 GL000253.2 HAVANA gene 4582154 4611971 6740.0 - 0 ENSG00000223699.8 protein_coding COL11A2 2 OTTHUMG00000149344.3 +1142 GL000253.2 ENSEMBL gene 4619074 4619169 96.0 + 0 ENSG00000265159.2 misc_RNA RF00019 3 +1143 GL000253.2 HAVANA gene 4613075 4620161 3906.0 - 0 ENSG00000231321.9 protein_coding RXRB 2 OTTHUMG00000149343.4 +1144 GL000253.2 HAVANA gene 4619918 4623912 2845.0 + 0 ENSG00000227402.11 protein_coding SLC39A7 2 OTTHUMG00000149348.2 +1145 GL000253.2 HAVANA gene 4624115 4626308 1171.0 + 0 ENSG00000228357.2 protein_coding HSD17B8 2 OTTHUMG00000149349.1 +1146 GL000253.2 HAVANA gene 4627972 4632199 1818.0 + 0 ENSG00000235107.3 protein_coding RING1 2 OTTHUMG00000149354.1 +1147 GL000253.2 HAVANA gene 4635182 4635805 624.0 + 0 ENSG00000236910.1 processed_pseudogene ZNF70P1 2 OTTHUMG00000149350.1 +1148 GL000253.2 HAVANA gene 4657284 4659175 984.0 + 0 ENSG00000230012.1 processed_pseudogene HTATSF1P1 2 OTTHUMG00000149353.1 +1149 GL000253.2 HAVANA gene 4669733 4671432 947.0 - 0 ENSG00000223618.7 protein_coding VPS52 2 OTTHUMG00000149352.3 +1150 GL000253.2 HAVANA gene 4668995 4674450 1374.0 + 0 ENSG00000231037.5 processed_transcript HCG25 2 OTTHUMG00000149351.1 +1151 GL000254.2 HAVANA gene 103467 104604 709.0 - 0 ENSG00000235668.1 processed_transcript CR936879.1 2 OTTHUMG00000149387.1 +1152 GL000254.2 HAVANA gene 127013 127644 632.0 + 0 ENSG00000234904.1 processed_pseudogene RPL13P 2 OTTHUMG00000149389.1 +1153 GL000254.2 HAVANA gene 125222 128944 2458.0 - 0 ENSG00000234966.1 processed_transcript LINC01623 2 OTTHUMG00000149386.1 +1154 GL000254.2 HAVANA gene 154592 155666 1075.0 - 0 ENSG00000232017.1 processed_pseudogene ZNF90P2 2 OTTHUMG00000149388.1 +1155 GL000254.2 HAVANA gene 162286 163076 411.0 + 0 ENSG00000236835.1 processed_transcript HCG14 2 OTTHUMG00000149390.1 +1156 GL000254.2 ENSEMBL gene 181400 181499 100.0 + 0 ENSG00000263598.1 snRNA RF00026 3 +1157 GL000254.2 HAVANA gene 168757 189744 6192.0 - 0 ENSG00000233948.10 protein_coding TRIM27 2 OTTHUMG00000149644.3 fragmented_locus +1158 GL000254.2 HAVANA gene 209632 210292 466.0 + 0 ENSG00000237313.1 protein_coding LINC01556 2 OTTHUMG00000149397.1 +1159 GL000254.2 HAVANA gene 292427 293354 928.0 - 0 ENSG00000225567.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000149533.1 +1160 GL000254.2 HAVANA gene 309955 310982 1028.0 - 0 ENSG00000228977.1 protein_coding OR2W1 2 OTTHUMG00000149531.3 +1161 GL000254.2 HAVANA gene 337566 338341 776.0 - 0 ENSG00000228635.1 unprocessed_pseudogene OR2P1P 2 OTTHUMG00000149534.1 +1162 GL000254.2 ENSEMBL gene 329740 342266 414.0 + 0 ENSG00000274733.1 protein_coding CR933783.1 3 +1163 GL000254.2 HAVANA gene 342315 342910 596.0 - 0 ENSG00000238070.1 processed_pseudogene SAR1AP1 2 OTTHUMG00000149645.1 +1164 GL000254.2 HAVANA gene 352037 353043 1007.0 - 0 ENSG00000233687.3 protein_coding OR2B3 2 OTTHUMG00000149532.3 +1165 GL000254.2 HAVANA gene 366346 367618 1273.0 + 0 ENSG00000226931.2 protein_coding OR2J1 2 OTTHUMG00000149391.2 +1166 GL000254.2 HAVANA gene 377630 378403 774.0 + 0 ENSG00000230855.3 protein_coding OR2J3 2 OTTHUMG00000149393.3 +1167 GL000254.2 HAVANA gene 403616 404552 937.0 - 0 ENSG00000228698.2 unprocessed_pseudogene CR759834.1 2 OTTHUMG00000149392.1 +1168 GL000254.2 HAVANA gene 439040 440311 1272.0 + 0 ENSG00000196231.7 protein_coding OR2J2 2 OTTHUMG00000149396.3 +1169 GL000254.2 HAVANA gene 447251 448186 936.0 + 0 ENSG00000220379.2 unprocessed_pseudogene OR2J4P 2 OTTHUMG00000149394.1 +1170 GL000254.2 HAVANA gene 480985 481928 944.0 + 0 ENSG00000233182.1 unprocessed_pseudogene CR759834.2 2 OTTHUMG00000149395.1 +1171 GL000254.2 HAVANA gene 556460 557402 943.0 + 0 ENSG00000224633.1 unprocessed_pseudogene CR933842.1 2 OTTHUMG00000149400.1 +1172 GL000254.2 HAVANA gene 572513 573478 966.0 + 0 ENSG00000112459.5 protein_coding OR14J1 2 OTTHUMG00000149399.2 +1173 GL000254.2 HAVANA gene 595450 596885 1436.0 - 0 ENSG00000232435.1 processed_pseudogene DDX6P1 2 OTTHUMG00000149401.1 +1174 GL000254.2 HAVANA gene 661929 662997 1069.0 + 0 ENSG00000204690.6 protein_coding OR12D2 2 OTTHUMG00000149398.2 +1175 GL000254.2 HAVANA gene 682648 683594 852.0 + 0 ENSG00000249571.1 unprocessed_pseudogene OR12D1 2 OTTHUMG00000149402.1 +1176 GL000254.2 HAVANA gene 621056 697336 1266.0 - 0 ENSG00000112461.9 protein_coding OR5V1 2 OTTHUMG00000149404.2 overlapping_locus +1177 GL000254.2 HAVANA gene 704675 706346 1672.0 + 0 ENSG00000204689.7 protein_coding OR10C1 2 OTTHUMG00000149411.3 +1178 GL000254.2 HAVANA gene 638936 715469 2011.0 - 0 ENSG00000204692.9 protein_coding OR12D3 2 OTTHUMG00000149410.1 overlapping_locus +1179 GL000254.2 HAVANA gene 690872 722445 2864.0 - 0 ENSG00000206472.11 protein_coding OR11A1 2 OTTHUMG00000149405.1 overlapping_locus +1180 GL000254.2 HAVANA gene 722555 729702 3708.0 + 0 ENSG00000206471.10 protein_coding OR2H1 2 OTTHUMG00000149409.1 +1181 GL000254.2 HAVANA gene 729970 735180 381.0 - 0 ENSG00000234856.1 unprocessed_pseudogene UBDP1 2 OTTHUMG00000149407.1 +1182 GL000254.2 HAVANA gene 740399 741445 1047.0 - 0 ENSG00000227668.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000149403.1 +1183 GL000254.2 HAVANA gene 752140 753276 1137.0 - 0 ENSG00000206470.3 protein_coding MAS1L 2 OTTHUMG00000149408.2 +1184 GL000254.2 HAVANA gene 754645 755050 406.0 - 0 ENSG00000223376.3 processed_pseudogene RPS17P1 2 OTTHUMG00000149406.1 +1185 GL000254.2 HAVANA gene 762884 775931 877.0 + 0 ENSG00000227886.1 processed_transcript CR759768.1 2 OTTHUMG00000149412.1 +1186 GL000254.2 HAVANA gene 794802 798950 2777.0 + 0 ENSG00000233857.5 processed_transcript LINC01015 2 OTTHUMG00000149413.1 +1187 GL000254.2 HAVANA gene 803086 804169 1084.0 - 0 ENSG00000228993.1 unprocessed_pseudogene GPR53P 2 OTTHUMG00000149424.1 +1188 GL000254.2 HAVANA gene 818623 819570 948.0 + 0 ENSG00000232049.2 unprocessed_pseudogene OR2I1P 2 OTTHUMG00000149494.1 +1189 GL000254.2 HAVANA gene 821016 825329 990.0 - 0 ENSG00000206468.3 protein_coding UBD 2 OTTHUMG00000149490.1 overlapping_locus +1190 GL000254.2 HAVANA gene 839302 840229 928.0 + 0 ENSG00000223853.2 unprocessed_pseudogene OR2H5P 2 OTTHUMG00000149492.1 +1191 GL000254.2 HAVANA gene 842853 843142 290.0 + 0 ENSG00000224293.2 processed_pseudogene TMEM183AP1 2 OTTHUMG00000149495.1 +1192 GL000254.2 ENSEMBL gene 847644 847727 84.0 + 0 ENSG00000265013.1 snoRNA SNORD32B 3 +1193 GL000254.2 HAVANA gene 847903 848420 518.0 + 0 ENSG00000231190.1 processed_pseudogene RPL13AP 2 OTTHUMG00000149489.1 +1194 GL000254.2 HAVANA gene 852850 854433 1584.0 + 0 ENSG00000206467.6 protein_coding OR2H2 2 OTTHUMG00000149487.1 +1195 GL000254.2 HAVANA gene 821016 898553 7011.0 - 0 ENSG00000206466.10 protein_coding GABBR1 2 OTTHUMG00000149486.1 overlapping_locus +1196 GL000254.2 HAVANA gene 901448 901731 284.0 - 0 ENSG00000230888.3 processed_pseudogene SUMO2P1 2 OTTHUMG00000149488.1 +1197 GL000254.2 HAVANA gene 922380 937746 3032.0 + 0 ENSG00000232641.10 protein_coding MOG 2 OTTHUMG00000149491.2 +1198 GL000254.2 HAVANA gene 937766 946481 2149.0 - 0 ENSG00000223858.7 protein_coding ZFP57 2 OTTHUMG00000149493.1 +1199 GL000254.2 HAVANA gene 973470 973892 423.0 - 0 ENSG00000236926.1 processed_pseudogene ZDHHC20P1 2 OTTHUMG00000149414.1 +1200 GL000254.2 HAVANA gene 985707 986697 991.0 - 0 ENSG00000249663.1 unprocessed_pseudogene CR759790.1 2 OTTHUMG00000149430.1 +1201 GL000254.2 HAVANA gene 985480 988541 1833.0 + 0 ENSG00000234487.11 protein_coding HLA-F 2 OTTHUMG00000149415.4 +1202 GL000254.2 HAVANA gene 1011015 1011239 225.0 + 0 ENSG00000228202.1 unprocessed_pseudogene CR788234.1 2 OTTHUMG00000149418.1 +1203 GL000254.2 HAVANA gene 1004456 1011695 1157.0 - 0 ENSG00000228491.2 unprocessed_pseudogene MICE 2 OTTHUMG00000149417.1 overlapping_locus +1204 GL000254.2 HAVANA gene 1008197 1011775 683.0 - 0 ENSG00000243430.1 processed_transcript CR788234.2 2 OTTHUMG00000149420.1 overlapping_locus +1205 GL000254.2 ENSEMBL gene 1013097 1013198 102.0 + 0 ENSG00000264646.1 misc_RNA RF00019 3 +1206 GL000254.2 HAVANA gene 1013455 1013874 420.0 - 0 ENSG00000233298.1 processed_pseudogene IFITM4P 2 OTTHUMG00000149419.1 +1207 GL000254.2 HAVANA gene 1054404 1055401 998.0 - 0 ENSG00000224564.4 unprocessed_pseudogene HCG4 2 OTTHUMG00000149441.1 +1208 GL000254.2 HAVANA gene 1053511 1060283 5544.0 + 0 ENSG00000229194.7 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000149421.2 +1209 GL000254.2 HAVANA gene 1062887 1064895 734.0 + 0 ENSG00000259930.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172775.1 +1210 GL000254.2 HAVANA gene 1065667 1066463 797.0 - 0 ENSG00000233982.2 processed_pseudogene RPL7AP7 2 OTTHUMG00000149422.1 +1211 GL000254.2 HAVANA gene 1075039 1075170 132.0 - 0 ENSG00000233592.1 unprocessed_pseudogene MICG 2 OTTHUMG00000149423.1 +1212 GL000254.2 HAVANA gene 1089856 1090835 980.0 - 0 ENSG00000232122.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000149432.1 +1213 GL000254.2 HAVANA gene 1089438 1093596 1763.0 + 0 ENSG00000237216.8 protein_coding HLA-G 2 OTTHUMG00000149631.2 +1214 GL000254.2 HAVANA gene 1114807 1114935 129.0 - 0 ENSG00000234364.1 unprocessed_pseudogene CT009517.2 2 OTTHUMG00000149426.1 +1215 GL000254.2 HAVANA gene 1144139 1145107 969.0 - 0 ENSG00000225120.1 unprocessed_pseudogene CT009517.1 2 OTTHUMG00000149435.1 +1216 GL000254.2 HAVANA gene 1144597 1147319 1088.0 + 0 ENSG00000247700.4 unprocessed_pseudogene HLA-H 2 OTTHUMG00000149425.1 +1217 GL000254.2 HAVANA gene 1153403 1154534 450.0 + 0 ENSG00000237098.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000149436.1 +1218 GL000254.2 HAVANA gene 1163374 1163740 192.0 + 0 ENSG00000236265.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000149431.1 +1219 GL000254.2 HAVANA gene 1164613 1165475 328.0 - 0 ENSG00000232649.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000149433.1 +1220 GL000254.2 HAVANA gene 1286636 1287147 512.0 - 0 ENSG00000228921.1 unprocessed_pseudogene CR759762.1 2 OTTHUMG00000149437.1 +1221 GL000254.2 HAVANA gene 1286636 1289979 2204.0 + 0 ENSG00000227715.11 protein_coding HLA-A 2 OTTHUMG00000149428.3 +1222 GL000254.2 HAVANA gene 1300663 1302624 758.0 + 0 ENSG00000236746.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000149439.2 +1223 GL000254.2 HAVANA gene 1314844 1316507 813.0 - 0 ENSG00000235600.1 unprocessed_pseudogene MICD 2 OTTHUMG00000149438.1 +1224 GL000254.2 HAVANA gene 1319165 1322464 663.0 + 0 ENSG00000234599.1 processed_transcript HCG9 2 OTTHUMG00000149440.1 +1225 GL000254.2 HAVANA gene 1337265 1337661 258.0 + 0 ENSG00000227389.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000149434.1 +1226 GL000254.2 HAVANA gene 1338493 1339370 335.0 - 0 ENSG00000236113.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000149427.1 +1227 GL000254.2 HAVANA gene 1350177 1351172 996.0 - 0 ENSG00000223892.1 unprocessed_pseudogene CR759763.1 2 OTTHUMG00000149429.1 overlapping_locus +1228 GL000254.2 HAVANA gene 1350639 1354012 1634.0 + 0 ENSG00000226586.7 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000149442.1 +1229 GL000254.2 HAVANA gene 1375787 1377077 984.0 + 0 ENSG00000228765.1 processed_pseudogene ETF1P1 2 OTTHUMG00000149500.1 +1230 GL000254.2 ENSEMBL gene 1379990 1380057 68.0 + 0 ENSG00000278347.1 misc_RNA RF02218 3 +1231 GL000254.2 ENSEMBL gene 1402208 1402283 76.0 + 0 ENSG00000276640.1 misc_RNA RF02219 3 +1232 GL000254.2 ENSEMBL gene 1405173 1405276 104.0 + 0 ENSG00000276594.1 misc_RNA RF02220 3 +1233 GL000254.2 HAVANA gene 1345067 1405733 20819.0 - 0 ENSG00000232691.6 processed_transcript ZNRD1ASP 2 OTTHUMG00000149443.1 overlapping_locus +1234 GL000254.2 HAVANA gene 1402992 1408999 3672.0 + 0 ENSG00000236808.6 protein_coding ZNRD1 2 OTTHUMG00000149506.1 ncRNA_host +1235 GL000254.2 HAVANA gene 1410799 1414423 2538.0 + 0 ENSG00000237403.6 protein_coding PPP1R11 2 OTTHUMG00000149503.2 +1236 GL000254.2 HAVANA gene 1414356 1419977 2206.0 - 0 ENSG00000230332.8 protein_coding RNF39 2 OTTHUMG00000149501.1 +1237 GL000254.2 HAVANA gene 1446972 1457179 3537.0 - 0 ENSG00000223531.9 protein_coding TRIM31 2 OTTHUMG00000149504.1 +1238 GL000254.2 HAVANA gene 1449315 1458797 549.0 + 0 ENSG00000225038.1 processed_transcript TRIM31-AS1 2 OTTHUMG00000149445.1 +1239 GL000254.2 ENSEMBL gene 1476894 1477056 163.0 - 0 ENSG00000263517.1 snoRNA RF00554 3 +1240 GL000254.2 HAVANA gene 1480197 1492817 2497.0 + 0 ENSG00000236399.7 protein_coding TRIM40 2 OTTHUMG00000149502.1 +1241 GL000254.2 HAVANA gene 1496020 1505011 3549.0 - 0 ENSG00000229381.8 protein_coding TRIM10 2 OTTHUMG00000149505.2 +1242 GL000254.2 HAVANA gene 1507279 1516769 2515.0 + 0 ENSG00000235905.8 protein_coding TRIM15 2 OTTHUMG00000149444.2 +1243 GL000254.2 HAVANA gene 1530829 1532638 1203.0 - 0 ENSG00000234574.1 processed_pseudogene PAIP1P1 2 OTTHUMG00000149446.1 overlapping_locus +1244 GL000254.2 HAVANA gene 1528484 1557367 4287.0 - 0 ENSG00000231641.9 protein_coding TRIM26 2 OTTHUMG00000149636.4 overlapping_locus +1245 GL000254.2 HAVANA gene 1758753 1763357 1055.0 + 0 ENSG00000230887.1 unprocessed_pseudogene MICC 2 OTTHUMG00000149449.1 +1246 GL000254.2 HAVANA gene 1833523 1838261 2975.0 + 0 ENSG00000225201.6 protein_coding HLA-E 2 OTTHUMG00000149447.1 +1247 GL000254.2 HAVANA gene 1860309 1863260 851.0 + 0 ENSG00000234057.1 processed_transcript LINC02569 2 OTTHUMG00000149535.1 +1248 GL000254.2 HAVANA gene 1885423 1901220 8646.0 - 0 ENSG00000228581.9 protein_coding GNL1 2 OTTHUMG00000149537.2 +1249 GL000254.2 HAVANA gene 1900932 1907769 4281.0 + 0 ENSG00000233564.10 protein_coding PRR3 2 OTTHUMG00000149538.1 +1250 GL000254.2 HAVANA gene 1915422 1941226 4338.0 + 0 ENSG00000236342.8 protein_coding ABCF1 2 OTTHUMG00000149541.1 +1251 GL000254.2 HAVANA gene 1944447 1962660 5215.0 - 0 ENSG00000235291.7 protein_coding PPP1R10 2 OTTHUMG00000149536.1 +1252 GL000254.2 HAVANA gene 1961757 1970443 1888.0 + 0 ENSG00000229861.8 protein_coding MRPS18B 2 OTTHUMG00000149540.1 +1253 GL000254.2 HAVANA gene 1977680 1977946 267.0 + 0 ENSG00000227655.4 processed_pseudogene PTMAP1 2 OTTHUMG00000149539.1 overlapping_locus +1254 GL000254.2 HAVANA gene 1970890 1990873 4035.0 + 0 ENSG00000231257.8 protein_coding ATAT1 2 OTTHUMG00000149542.1 overlapping_locus +1255 GL000254.2 HAVANA gene 1991089 1997159 1863.0 + 0 ENSG00000224120.9 protein_coding C6orf136 2 OTTHUMG00000149448.1 +1256 GL000254.2 HAVANA gene 1997169 2017114 4008.0 - 0 ENSG00000231377.6 protein_coding DHX16 2 OTTHUMG00000149459.2 +1257 GL000254.2 HAVANA gene 2020466 2031972 4599.0 - 0 ENSG00000225060.8 protein_coding PPP1R18 2 OTTHUMG00000149456.1 +1258 GL000254.2 HAVANA gene 2032124 2035497 2045.0 - 0 ENSG00000234809.8 protein_coding NRM 2 OTTHUMG00000149466.1 +1259 GL000254.2 HAVANA gene 2040882 2041611 730.0 - 0 ENSG00000229575.1 processed_pseudogene RPL7P4 2 OTTHUMG00000149464.1 +1260 GL000254.2 HAVANA gene 2047143 2057259 738.0 + 0 ENSG00000233883.1 processed_transcript MDC1-AS1 2 OTTHUMG00000149450.1 +1261 GL000254.2 HAVANA gene 2043883 2061964 8064.0 - 0 ENSG00000237095.9 protein_coding MDC1 2 OTTHUMG00000149465.2 +1262 GL000254.2 HAVANA gene 2064276 2069501 3359.0 + 0 ENSG00000229684.10 protein_coding TUBB 2 OTTHUMG00000149458.1 +1263 GL000254.2 ENSEMBL gene 2080379 2080489 111.0 - 0 ENSG00000266523.1 misc_RNA RF00019 3 +1264 GL000254.2 HAVANA gene 2071784 2085614 2020.0 - 0 ENSG00000224740.8 protein_coding FLOT1 2 OTTHUMG00000149457.3 ncRNA_host +1265 GL000254.2 HAVANA gene 2183601 2192238 799.0 - 0 ENSG00000224862.1 processed_transcript LINC02570 2 OTTHUMG00000149463.1 +1266 GL000254.2 ENSEMBL gene 2208408 2208710 303.0 + 0 ENSG00000265633.1 misc_RNA RF00100 3 +1267 GL000254.2 HAVANA gene 2211142 2220070 3984.0 - 0 ENSG00000227422.1 processed_transcript DDR1-DT 2 OTTHUMG00000149451.1 +1268 GL000254.2 HAVANA gene 2225124 2236239 2450.0 + 0 ENSG00000223680.10 protein_coding DDR1 2 OTTHUMG00000149455.3 +1269 GL000254.2 HAVANA gene 2252331 2258253 2353.0 + 0 ENSG00000234370.10 protein_coding GTF2H4 2 OTTHUMG00000149461.2 overlapping_locus +1270 GL000254.2 ENSEMBL gene 2258352 2270612 4070.0 + 0 ENSG00000285515.1 protein_coding VARS2 3 +1271 GL000254.2 HAVANA gene 2252389 2270615 8456.0 + 0 ENSG00000234032.10 protein_coding VARS2 2 OTTHUMG00000149460.2 overlapping_locus +1272 GL000254.2 HAVANA gene 2275484 2276306 691.0 - 0 ENSG00000237814.2 protein_coding SFTA2 2 OTTHUMG00000149467.1 +1273 GL000254.2 ENSEMBL gene 2276750 2276841 92.0 - 0 ENSG00000264847.1 misc_RNA RF00019 3 +1274 GL000254.2 HAVANA gene 2290113 2290493 381.0 - 0 ENSG00000228448.1 processed_transcript HCG21 2 OTTHUMG00000149453.1 +1275 GL000254.2 HAVANA gene 2285105 2295265 2695.0 + 0 ENSG00000257232.1 protein_coding MUCL3 2 OTTHUMG00000149462.4 +1276 GL000254.2 HAVANA gene 2327856 2334046 3793.0 + 0 ENSG00000227506.5 protein_coding MUC21 2 OTTHUMG00000149468.1 +1277 GL000254.2 HAVANA gene 2354613 2379541 6019.0 + 0 ENSG00000227132.5 processed_transcript CR759772.1 2 OTTHUMG00000149452.1 +1278 GL000254.2 HAVANA gene 2397575 2404006 2183.0 + 0 ENSG00000225629.6 transcribed_unprocessed_pseudogene HCG22 2 OTTHUMG00000149469.2 +1279 GL000254.2 ENSEMBL gene 2427127 2427226 100.0 + 0 ENSG00000263474.1 snRNA RF00026 3 +1280 GL000254.2 HAVANA gene 2455340 2456676 1140.0 - 0 ENSG00000224105.2 protein_coding C6orf15 2 OTTHUMG00000149473.1 +1281 GL000254.2 HAVANA gene 2459207 2464559 2549.0 - 0 ENSG00000237165.2 protein_coding CDSN 2 OTTHUMG00000149476.2 +1282 GL000254.2 HAVANA gene 2481671 2483487 1152.0 - 0 ENSG00000227246.2 protein_coding PSORS1C2 2 OTTHUMG00000149470.1 +1283 GL000254.2 HAVANA gene 2458867 2484175 4688.0 + 0 ENSG00000233734.8 protein_coding PSORS1C1 2 OTTHUMG00000149471.1 +1284 GL000254.2 HAVANA gene 2484856 2485042 187.0 + 0 ENSG00000233504.1 processed_pseudogene POLR2LP1 2 OTTHUMG00000149472.1 +1285 GL000254.2 HAVANA gene 2486567 2502362 4556.0 - 0 ENSG00000224180.8 protein_coding CCHCR1 2 OTTHUMG00000149637.3 +1286 GL000254.2 HAVANA gene 2502701 2508330 3281.0 + 0 ENSG00000224472.6 protein_coding TCF19 2 OTTHUMG00000149638.2 +1287 GL000254.2 HAVANA gene 2508452 2514827 1880.0 - 0 ENSG00000235068.9 protein_coding POU5F1 2 OTTHUMG00000149474.2 +1288 GL000254.2 ENSEMBL gene 2514696 2516718 108.0 + 0 ENSG00000258002.2 protein_coding CR759815.2 3 +1289 GL000254.2 HAVANA gene 2517868 2522038 593.0 - 0 ENSG00000230983.1 processed_transcript PSORS1C3 2 OTTHUMG00000149477.1 +1290 GL000254.2 HAVANA gene 2544328 2546125 517.0 - 0 ENSG00000226408.1 processed_transcript CR759815.1 2 OTTHUMG00000149475.1 +1291 GL000254.2 HAVANA gene 2541918 2548174 1805.0 + 0 ENSG00000223577.2 processed_transcript HCG27 2 OTTHUMG00000149454.1 +1292 GL000254.2 HAVANA gene 2611478 2614849 2569.0 - 0 ENSG00000225691.7 protein_coding HLA-C 2 OTTHUMG00000149479.5 +1293 GL000254.2 HAVANA gene 2618277 2621449 3173.0 + 0 ENSG00000226050.3 processed_pseudogene USP8P1 2 OTTHUMG00000149484.1 +1294 GL000254.2 HAVANA gene 2623012 2624211 1200.0 + 0 ENSG00000227656.3 processed_pseudogene RPL3P2 2 OTTHUMG00000149483.1 +1295 GL000254.2 HAVANA gene 2630194 2631648 1455.0 - 0 ENSG00000231309.1 processed_pseudogene WASF5P 2 OTTHUMG00000149482.1 +1296 GL000254.2 HAVANA gene 2650518 2651252 306.0 - 0 ENSG00000228713.1 unprocessed_pseudogene CR759828.1 2 OTTHUMG00000149481.1 +1297 GL000254.2 HAVANA gene 2612219 2699230 2745.0 - 0 ENSG00000232126.8 protein_coding HLA-B 2 OTTHUMG00000149478.4 +1298 GL000254.2 HAVANA gene 2806319 2807782 1464.0 + 0 ENSG00000227429.5 processed_transcript HCP5 2 OTTHUMG00000149480.1 +1299 GL000254.2 ENSEMBL gene 2838645 2838746 102.0 - 0 ENSG00000263679.1 misc_RNA RF00019 3 +1300 GL000254.2 HAVANA gene 2840040 2853071 2681.0 + 0 ENSG00000238289.9 protein_coding MICB 2 OTTHUMG00000149499.2 +1301 GL000254.2 HAVANA gene 2861432 2862243 498.0 - 0 ENSG00000229706.4 processed_pseudogene PPIAP9 2 OTTHUMG00000149496.1 +1302 GL000254.2 HAVANA gene 2870057 2870636 580.0 + 0 ENSG00000236547.1 processed_pseudogene RPL15P4 2 OTTHUMG00000149498.1 +1303 GL000254.2 HAVANA gene 2870660 2872175 955.0 + 0 ENSG00000228662.2 protein_coding MCCD1 2 OTTHUMG00000149497.1 +1304 GL000254.2 ENSEMBL gene 2878316 2878391 76.0 - 0 ENSG00000263625.1 snoRNA SNORD117 3 +1305 GL000254.2 ENSEMBL gene 2883040 2883117 78.0 - 0 ENSG00000266755.1 snoRNA SNORD84 3 +1306 GL000254.2 HAVANA gene 2884243 2885077 527.0 + 0 ENSG00000234082.1 processed_transcript DDX39B-AS1 2 OTTHUMG00000149485.1 +1307 GL000254.2 HAVANA gene 2872162 2888517 7211.0 - 0 ENSG00000229496.10 protein_coding DDX39B 2 OTTHUMG00000149528.4 ncRNA_host,overlapping_locus +1308 GL000254.2 HAVANA gene 2886401 2888783 1652.0 - 0 ENSG00000230900.5 protein_coding ATP6V1G2 2 OTTHUMG00000149523.1 overlapping_locus +1309 GL000254.2 HAVANA gene 2888805 2900754 1779.0 + 0 ENSG00000235125.8 protein_coding NFKBIL1 2 OTTHUMG00000149510.2 +1310 GL000254.2 HAVANA gene 2913950 2916222 1737.0 + 0 ENSG00000226275.8 protein_coding LTA 2 OTTHUMG00000149529.1 +1311 GL000254.2 HAVANA gene 2917465 2920234 1676.0 + 0 ENSG00000223952.3 protein_coding TNF 2 OTTHUMG00000149508.1 +1312 GL000254.2 HAVANA gene 2922453 2924420 926.0 - 0 ENSG00000236237.7 protein_coding LTB 2 OTTHUMG00000149518.1 +1313 GL000254.2 HAVANA gene 2928019 2930802 2292.0 + 0 ENSG00000234514.8 protein_coding LST1 2 OTTHUMG00000149513.2 +1314 GL000254.2 HAVANA gene 2930788 2934878 1212.0 - 0 ENSG00000225211.6 protein_coding NCR3 2 OTTHUMG00000149517.2 +1315 GL000254.2 HAVANA gene 2957070 2958907 1320.0 + 0 ENSG00000235985.7 protein_coding AIF1 2 OTTHUMG00000149519.1 +1316 GL000254.2 ENSEMBL gene 2964964 2965095 132.0 + 0 ENSG00000265754.1 snoRNA SNORA38 3 +1317 GL000254.2 HAVANA gene 2962602 2979651 9115.0 + 0 ENSG00000225748.9 protein_coding PRRC2A 2 OTTHUMG00000149514.1 ncRNA_host +1318 GL000254.2 HAVANA gene 2980907 2994577 5323.0 - 0 ENSG00000234651.10 protein_coding BAG6 2 OTTHUMG00000149640.3 +1319 GL000254.2 HAVANA gene 2994288 3000082 1237.0 + 0 ENSG00000226215.6 protein_coding APOM 2 OTTHUMG00000149520.2 +1320 GL000254.2 HAVANA gene 3000201 3002593 673.0 + 0 ENSG00000225390.1 processed_transcript C6orf47-AS1 2 OTTHUMG00000149507.1 +1321 GL000254.2 HAVANA gene 3000170 3002644 2475.0 - 0 ENSG00000226531.2 protein_coding C6orf47 2 OTTHUMG00000149522.1 +1322 GL000254.2 ENSEMBL gene 3005160 3005273 114.0 + 0 ENSG00000265738.1 misc_RNA RF00019 3 +1323 GL000254.2 HAVANA gene 3003101 3008155 3528.0 - 0 ENSG00000232312.6 protein_coding GPANK1 2 OTTHUMG00000149515.3 +1324 GL000254.2 HAVANA gene 3010990 3015418 2644.0 + 0 ENSG00000241132.7 protein_coding LY6G5B 2 OTTHUMG00000149639.1 overlapping_locus +1325 GL000254.2 HAVANA gene 3007108 3015418 4549.0 + 0 ENSG00000224398.7 protein_coding CSNK2B 2 OTTHUMG00000149509.1 overlapping_locus +1326 GL000254.2 HAVANA gene 3018556 3025912 2828.0 - 0 ENSG00000237495.9 protein_coding LY6G5C 2 OTTHUMG00000149521.1 +1327 GL000254.2 HAVANA gene 3028821 3045289 3850.0 - 0 ENSG00000236063.9 protein_coding ABHD16A 2 OTTHUMG00000149516.2 +1328 GL000254.2 HAVANA gene 3048758 3052468 920.0 + 0 ENSG00000240957.1 protein_coding LY6G6F 2 OTTHUMG00000149526.1 overlapping_locus +1329 GL000254.2 HAVANA gene 3054213 3055689 506.0 - 0 ENSG00000235769.8 protein_coding LY6G6E 2 OTTHUMG00000149527.1 +1330 GL000254.2 HAVANA gene 3048777 3059793 1533.0 + 0 ENSG00000236902.8 protein_coding LY6G6D 2 OTTHUMG00000149642.2 overlapping_locus +1331 GL000254.2 HAVANA gene 3060523 3063720 1103.0 - 0 ENSG00000228250.2 protein_coding LY6G6C 2 OTTHUMG00000149530.2 +1332 GL000254.2 HAVANA gene 3060469 3068585 2860.0 + 0 ENSG00000237459.6 protein_coding MPIG6B 2 OTTHUMG00000149525.1 +1333 GL000254.2 HAVANA gene 3068913 3072492 2538.0 - 0 ENSG00000225635.7 protein_coding DDAH2 2 OTTHUMG00000149544.2 overlapping_locus +1334 GL000254.2 HAVANA gene 3072456 3081639 1942.0 - 0 ENSG00000226417.6 protein_coding CLIC1 2 OTTHUMG00000149512.1 overlapping_locus +1335 GL000254.2 ENSEMBL gene 3098840 3098942 103.0 - 0 ENSG00000264951.1 snRNA RF00026 3 +1336 GL000254.2 HAVANA gene 3081867 3105033 5441.0 + 0 ENSG00000227314.12 protein_coding MSH5 2 OTTHUMG00000149641.4 overlapping_locus +1337 GL000254.2 HAVANA gene 3104688 3106740 1557.0 + 0 ENSG00000234951.9 protein_coding SAPCD1 2 OTTHUMG00000149543.1 overlapping_locus +1338 GL000254.2 HAVANA gene 3081896 3106740 4140.0 + 0 ENSG00000266442.5 protein_coding MSH5-SAPCD1 2 OTTHUMG00000179486.2 overlapping_locus +1339 GL000254.2 HAVANA gene 3106199 3107477 461.0 - 0 ENSG00000235765.1 processed_transcript SAPCD1-AS1 2 OTTHUMG00000149545.1 +1340 GL000254.2 HAVANA gene 3107479 3119183 3638.0 - 0 ENSG00000223757.8 protein_coding VWA7 2 OTTHUMG00000149511.1 +1341 GL000254.2 ENSEMBL gene 3120706 3120794 89.0 - 0 ENSG00000264887.1 misc_RNA RF00019 3 +1342 GL000254.2 HAVANA gene 3119407 3137842 6081.0 - 0 ENSG00000224264.9 protein_coding VARS 2 OTTHUMG00000149524.3 ncRNA_host +1343 GL000254.2 HAVANA gene 3139285 3148874 1119.0 - 0 ENSG00000225998.6 protein_coding LSM2 2 OTTHUMG00000149546.1 +1344 GL000254.2 HAVANA gene 3199729 3204976 4822.0 - 0 ENSG00000227129.6 protein_coding NEU1 2 OTTHUMG00000149547.2 +1345 GL000254.2 HAVANA gene 3205262 3221111 3369.0 - 0 ENSG00000229077.8 protein_coding SLC44A4 2 OTTHUMG00000149548.1 +1346 GL000254.2 HAVANA gene 3225826 3226119 223.0 + 0 ENSG00000233649.1 processed_transcript CR759784.1 2 OTTHUMG00000149549.1 +1347 GL000254.2 HAVANA gene 3221824 3239759 7289.0 - 0 ENSG00000238134.8 protein_coding EHMT2 2 OTTHUMG00000149555.2 +1348 GL000254.2 HAVANA gene 3241682 3244067 1875.0 - 0 ENSG00000234196.2 protein_coding ZBTB12 2 OTTHUMG00000149551.1 +1349 GL000254.2 HAVANA gene 3276485 3283759 787.0 - 0 ENSG00000223661.1 processed_transcript C4B-AS1 2 OTTHUMG00000149554.1 +1350 GL000254.2 HAVANA gene 3239857 3287710 5541.0 + 0 ENSG00000226560.10 protein_coding C2 2 OTTHUMG00000149550.3 overlapping_locus +1351 GL000254.2 HAVANA gene 3287686 3294120 4538.0 + 0 ENSG00000243570.9 protein_coding CFB 2 OTTHUMG00000149616.1 overlapping_locus +1352 GL000254.2 HAVANA gene 3294123 3301128 2701.0 - 0 ENSG00000229363.9 protein_coding NELFE 2 OTTHUMG00000149556.2 +1353 GL000254.2 HAVANA gene 3301116 3311787 5561.0 + 0 ENSG00000232616.9 protein_coding SKIV2L 2 OTTHUMG00000149557.1 +1354 GL000254.2 HAVANA gene 3311846 3314328 2483.0 - 0 ENSG00000224313.6 protein_coding DXO 2 OTTHUMG00000149552.1 +1355 GL000254.2 HAVANA gene 3313211 3323483 3546.0 + 0 ENSG00000226033.10 protein_coding STK19 2 OTTHUMG00000149553.2 +1356 GL000254.2 HAVANA gene 3324061 3324087 27.0 + 0 ENSG00000224639.1 processed_transcript C4B 2 OTTHUMG00000149562.1 +1357 GL000254.2 HAVANA gene 3349969 3350487 422.0 + 0 ENSG00000229856.7 transcribed_unprocessed_pseudogene CYP21A1P 2 OTTHUMG00000149561.1 +1358 GL000254.2 HAVANA gene 3350650 3354508 2038.0 - 0 ENSG00000224140.2 unprocessed_pseudogene TNXA 2 OTTHUMG00000149559.1 +1359 GL000254.2 HAVANA gene 3355306 3355823 211.0 + 0 ENSG00000230354.1 unprocessed_pseudogene STK19B 2 OTTHUMG00000149560.1 +1360 GL000254.2 HAVANA gene 3356798 3377455 6919.0 + 0 ENSG00000227746.9 protein_coding C4A 2 OTTHUMG00000149630.1 +1361 GL000254.2 HAVANA gene 3374766 3378295 2079.0 - 0 ENSG00000225540.1 processed_transcript C4A-AS1 2 OTTHUMG00000149558.1 +1362 GL000254.2 HAVANA gene 3380335 3383703 2633.0 + 0 ENSG00000235134.7 protein_coding CYP21A2 2 OTTHUMG00000149566.2 +1363 GL000254.2 ENSEMBL gene 3420540 3420660 121.0 - 0 ENSG00000266726.1 rRNA RF00001 3 +1364 GL000254.2 HAVANA gene 3383188 3459630 15205.0 - 0 ENSG00000206258.12 protein_coding TNXB 2 OTTHUMG00000149634.3 ncRNA_host,overlapping_locus +1365 GL000254.2 HAVANA gene 3457284 3470273 3629.0 - 0 ENSG00000228628.8 protein_coding ATF6B 2 OTTHUMG00000149643.2 overlapping_locus +1366 GL000254.2 HAVANA gene 3470727 3472311 1345.0 - 0 ENSG00000223666.2 protein_coding FKBPL 2 OTTHUMG00000149564.1 +1367 GL000254.2 HAVANA gene 3490374 3496388 4261.0 - 0 ENSG00000227122.9 protein_coding PRRT1 2 OTTHUMG00000149563.2 +1368 GL000254.2 HAVANA gene 3506604 3510302 2621.0 + 0 ENSG00000240592.5 protein_coding EGFL8 2 OTTHUMG00000149567.3 overlapping_locus +1369 GL000254.2 HAVANA gene 3495456 3513999 6990.0 + 0 ENSG00000231618.10 protein_coding PPT2 2 OTTHUMG00000149635.5 overlapping_locus +1370 GL000254.2 HAVANA gene 3510233 3520117 3631.0 - 0 ENSG00000235758.9 protein_coding AGPAT1 2 OTTHUMG00000149572.1 +1371 GL000254.2 HAVANA gene 3520375 3522812 1178.0 + 0 ENSG00000225452.5 protein_coding RNF5 2 OTTHUMG00000149565.1 +1372 GL000254.2 HAVANA gene 3522987 3526343 2077.0 - 0 ENSG00000230514.11 protein_coding AGER 2 OTTHUMG00000149568.2 +1373 GL000254.2 HAVANA gene 3526760 3532202 4341.0 - 0 ENSG00000236353.7 protein_coding PBX2 2 OTTHUMG00000149569.2 +1374 GL000254.2 HAVANA gene 3532782 3537539 1854.0 - 0 ENSG00000234243.7 protein_coding GPSM3 2 OTTHUMG00000149570.2 overlapping_locus +1375 GL000254.2 HAVANA gene 3536859 3566106 9747.0 - 0 ENSG00000223355.5 protein_coding NOTCH4 2 OTTHUMG00000149571.1 overlapping_locus +1376 GL000254.2 HAVANA gene 3667318 3668277 960.0 + 0 ENSG00000225237.1 processed_pseudogene HNRNPA1P2 2 OTTHUMG00000149579.1 +1377 GL000254.2 ENSEMBL gene 3694631 3694737 107.0 + 0 ENSG00000264557.1 snRNA RF00026 3 +1378 GL000254.2 HAVANA gene 3658487 3713684 847.0 - 0 ENSG00000237881.6 protein_coding C6orf10 2 OTTHUMG00000149578.4 +1379 GL000254.2 HAVANA gene 3732259 3735436 611.0 + 0 ENSG00000230602.1 processed_transcript HCG23 2 OTTHUMG00000149573.1 +1380 GL000254.2 HAVANA gene 3735713 3748885 1470.0 - 0 ENSG00000225845.7 protein_coding BTNL2 2 OTTHUMG00000149574.3 +1381 GL000254.2 HAVANA gene 3780808 3786018 1280.0 + 0 ENSG00000230726.9 protein_coding HLA-DRA 2 OTTHUMG00000149575.1 +1382 GL000254.2 HAVANA gene 3800705 3814360 343.0 - 0 ENSG00000228260.2 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000149576.1 +1383 GL000254.2 HAVANA gene 3826598 3826693 96.0 - 0 ENSG00000232441.2 unprocessed_pseudogene CR788250.2 2 OTTHUMG00000149907.1 +1384 GL000254.2 ENSEMBL gene 3852164 3852311 148.0 - 0 ENSG00000264893.1 snRNA RF00003 3 +1385 GL000254.2 HAVANA gene 3857591 3857686 96.0 - 0 ENSG00000235074.1 unprocessed_pseudogene CR788250.3 2 OTTHUMG00000149906.1 +1386 GL000254.2 ENSEMBL gene 3873958 3874109 152.0 - 0 ENSG00000263971.1 snRNA RF00003 3 +1387 GL000254.2 HAVANA gene 3876736 3891699 1184.0 - 0 ENSG00000231021.9 protein_coding CR788250.1 2 OTTHUMG00000149580.2 +1388 GL000254.2 HAVANA gene 3929251 3949996 8903.0 + 0 ENSG00000228284.8 protein_coding HLA-DQA1 2 OTTHUMG00000149584.5 +1389 GL000254.2 HAVANA gene 3956247 3957097 553.0 + 0 ENSG00000232351.1 processed_transcript HLA-DQB1-AS1 2 OTTHUMG00000149585.1 +1390 GL000254.2 HAVANA gene 3956253 3958848 309.0 - 0 ENSG00000242044.1 processed_transcript CR933859.1 2 OTTHUMG00000149581.1 overlapping_locus +1391 GL000254.2 HAVANA gene 3955834 3964882 5114.0 - 0 ENSG00000231286.7 protein_coding HLA-DQB1 2 OTTHUMG00000149582.4 overlapping_locus +1392 GL000254.2 HAVANA gene 4005362 4006194 833.0 - 0 ENSG00000228025.1 unprocessed_pseudogene MTCO3P1 2 OTTHUMG00000149589.1 +1393 GL000254.2 HAVANA gene 4016739 4017573 449.0 + 0 ENSG00000226550.1 processed_transcript CR759848.1 2 OTTHUMG00000149586.1 +1394 GL000254.2 HAVANA gene 4030137 4031073 356.0 - 0 ENSG00000234510.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000149588.1 +1395 GL000254.2 HAVANA gene 4040716 4046584 1517.0 + 0 ENSG00000206301.9 protein_coding HLA-DQA2 2 OTTHUMG00000149587.2 +1396 GL000254.2 HAVANA gene 4055473 4062912 2030.0 - 0 ENSG00000228254.9 protein_coding HLA-DQB2 2 OTTHUMG00000149591.3 +1397 GL000254.2 HAVANA gene 4111856 4116141 1858.0 - 0 ENSG00000241910.5 protein_coding HLA-DOB 2 OTTHUMG00000149590.3 +1398 GL000254.2 HAVANA gene 4120921 4137847 6390.0 - 0 ENSG00000237599.9 protein_coding TAP2 2 OTTHUMG00000149594.1 +1399 GL000254.2 HAVANA gene 4139786 4143772 2006.0 - 0 ENSG00000226201.6 protein_coding PSMB8 2 OTTHUMG00000149595.1 +1400 GL000254.2 HAVANA gene 4143155 4145564 1951.0 + 0 ENSG00000234365.6 processed_transcript PSMB8-AS1 2 OTTHUMG00000149596.1 overlapping_locus +1401 GL000254.2 HAVANA gene 4144278 4153047 4576.0 - 0 ENSG00000230705.4 protein_coding TAP1 2 OTTHUMG00000149619.1 +1402 GL000254.2 HAVANA gene 4143205 4178620 3309.0 + 0 ENSG00000240508.7 protein_coding PSMB9 2 OTTHUMG00000149620.4 overlapping_locus +1403 GL000254.2 HAVANA gene 4178205 4178881 677.0 - 0 ENSG00000233498.8 transcribed_processed_pseudogene PPP1R2P1 2 OTTHUMG00000149618.1 +1404 GL000254.2 HAVANA gene 4195442 4195516 75.0 + 0 ENSG00000226691.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000149617.1 +1405 GL000254.2 HAVANA gene 4233672 4252170 4829.0 - 0 ENSG00000242386.8 protein_coding HLA-DMB 2 OTTHUMG00000149621.2 overlapping_locus +1406 GL000254.2 HAVANA gene 4247658 4269773 2675.0 - 0 ENSG00000239463.7 protein_coding HLA-DMA 2 OTTHUMG00000149622.5 overlapping_locus +1407 GL000254.2 HAVANA gene 4269360 4269874 198.0 + 0 ENSG00000237348.1 processed_transcript CR759798.1 2 OTTHUMG00000149632.1 overlapping_locus +1408 GL000254.2 HAVANA gene 4267717 4278255 5108.0 + 0 ENSG00000236227.8 protein_coding BRD2 2 OTTHUMG00000149633.6 +1409 GL000254.2 HAVANA gene 4303233 4308667 4012.0 - 0 ENSG00000230141.11 protein_coding HLA-DOA 2 OTTHUMG00000149623.2 +1410 GL000254.2 HAVANA gene 4378504 4378913 410.0 + 0 ENSG00000231288.1 processed_pseudogene RPL32P1 2 OTTHUMG00000149625.1 overlapping_locus +1411 GL000254.2 HAVANA gene 4363634 4379828 5748.0 - 0 ENSG00000168384.11 protein_coding HLA-DPA1 2 OTTHUMG00000149624.6 +1412 GL000254.2 HAVANA gene 4374973 4386238 2791.0 + 0 ENSG00000230763.11 protein_coding HLA-DPB1 2 OTTHUMG00000149629.4 overlapping_locus +1413 GL000254.2 HAVANA gene 4390790 4396332 733.0 - 0 ENSG00000230878.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000149628.1 +1414 GL000254.2 HAVANA gene 4402804 4406340 676.0 - 0 ENSG00000234249.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000149626.1 +1415 GL000254.2 HAVANA gene 4411461 4416229 429.0 + 0 ENSG00000223372.7 transcribed_unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000149627.4 +1416 GL000254.2 HAVANA gene 4598639 4628455 6740.0 - 0 ENSG00000235708.8 protein_coding COL11A2 2 OTTHUMG00000149593.3 +1417 GL000254.2 ENSEMBL gene 4635554 4635649 96.0 + 0 ENSG00000266464.2 misc_RNA RF00019 3 +1418 GL000254.2 HAVANA gene 4629544 4636641 3918.0 - 0 ENSG00000235712.10 protein_coding RXRB 2 OTTHUMG00000149592.3 +1419 GL000254.2 HAVANA gene 4636398 4640392 2845.0 + 0 ENSG00000224399.11 protein_coding SLC39A7 2 OTTHUMG00000149597.2 +1420 GL000254.2 HAVANA gene 4640595 4642784 1171.0 + 0 ENSG00000232357.2 protein_coding HSD17B8 2 OTTHUMG00000149598.1 +1421 GL000254.2 HAVANA gene 4644448 4648675 1818.0 + 0 ENSG00000231115.3 protein_coding RING1 2 OTTHUMG00000149604.1 +1422 GL000254.2 HAVANA gene 4651658 4652281 624.0 + 0 ENSG00000237723.1 processed_pseudogene ZNF70P1 2 OTTHUMG00000149600.1 +1423 GL000254.2 HAVANA gene 4673733 4675631 991.0 + 0 ENSG00000227750.1 processed_pseudogene HTATSF1P1 2 OTTHUMG00000149603.1 +1424 GL000254.2 HAVANA gene 4685516 4690967 1373.0 + 0 ENSG00000238064.5 processed_transcript HCG25 2 OTTHUMG00000149601.1 +1425 GL000254.2 HAVANA gene 4686254 4708009 4503.0 - 0 ENSG00000224455.9 protein_coding VPS52 2 OTTHUMG00000149602.2 +1426 GL000254.2 HAVANA gene 4707972 4712476 1898.0 + 0 ENSG00000226225.6 protein_coding RPS18 2 OTTHUMG00000149599.1 +1427 GL000254.2 HAVANA gene 4713098 4714791 1694.0 + 0 ENSG00000236802.4 protein_coding B3GALT4 2 OTTHUMG00000149606.1 +1428 GL000254.2 HAVANA gene 4715074 4725463 3115.0 - 0 ENSG00000236222.8 protein_coding WDR46 2 OTTHUMG00000149605.2 +1429 GL000254.2 HAVANA gene 4725238 4734337 2953.0 + 0 ENSG00000235692.8 protein_coding PFDN6 2 OTTHUMG00000149607.1 +1430 GL000254.2 HAVANA gene 4727590 4735260 4541.0 - 0 ENSG00000228736.9 protein_coding RGL2 2 OTTHUMG00000149608.2 +1431 GL000254.2 HAVANA gene 4735630 4750321 4992.0 - 0 ENSG00000206208.11 protein_coding TAPBP 2 OTTHUMG00000149610.1 +1432 GL000254.2 HAVANA gene 4750352 4753876 2715.0 - 0 ENSG00000237056.5 protein_coding ZBTB22 2 OTTHUMG00000149612.3 +1433 GL000254.2 HAVANA gene 4754493 4765202 3661.0 - 0 ENSG00000231617.8 protein_coding DAXX 2 OTTHUMG00000149613.3 +1434 GL000254.2 HAVANA gene 4774916 4775433 518.0 + 0 ENSG00000224874.3 processed_pseudogene MYL8P 2 OTTHUMG00000149614.1 +1435 GL000254.2 HAVANA gene 4801486 4802181 696.0 - 0 ENSG00000205677.4 processed_pseudogene LYPLA2P1 2 OTTHUMG00000149615.1 +1436 GL000254.2 HAVANA gene 4825323 4825424 102.0 - 0 ENSG00000231602.1 processed_pseudogene RPL35AP4 2 OTTHUMG00000149609.1 +1437 GL000254.2 HAVANA gene 4827484 4827813 330.0 + 0 ENSG00000056678.11 processed_transcript KIFC1 2 OTTHUMG00000149611.1 +1438 GL000255.2 HAVANA gene 49224 49595 372.0 - 0 ENSG00000273323.1 processed_pseudogene NOP56P1 2 OTTHUMG00000004758.1 +1439 GL000255.2 HAVANA gene 103450 104587 709.0 - 0 ENSG00000272907.1 processed_transcript AL844539.1 2 OTTHUMG00000004760.1 +1440 GL000255.2 HAVANA gene 126997 127628 632.0 + 0 ENSG00000273122.1 processed_pseudogene RPL13P 2 OTTHUMG00000004762.1 +1441 GL000255.2 HAVANA gene 125206 128932 2458.0 - 0 ENSG00000272629.1 processed_transcript LINC01623 2 OTTHUMG00000004759.1 +1442 GL000255.2 HAVANA gene 154414 155488 1075.0 - 0 ENSG00000229714.1 processed_pseudogene ZNF90P2 2 OTTHUMG00000004761.1 +1443 GL000255.2 HAVANA gene 162112 162904 413.0 + 0 ENSG00000227559.1 processed_transcript HCG14 2 OTTHUMG00000004764.1 +1444 GL000255.2 ENSEMBL gene 181227 181326 100.0 + 0 ENSG00000265795.1 snRNA RF00026 3 +1445 GL000255.2 HAVANA gene 168584 189571 7988.0 - 0 ENSG00000215641.8 protein_coding TRIM27 2 OTTHUMG00000005035.1 +1446 GL000255.2 HAVANA gene 209458 210118 466.0 + 0 ENSG00000206526.2 protein_coding LINC01556 2 OTTHUMG00000004770.1 +1447 GL000255.2 HAVANA gene 234711 236041 1331.0 - 0 ENSG00000235541.1 processed_pseudogene KRT18P1 2 OTTHUMG00000004915.1 +1448 GL000255.2 ENSEMBL gene 243054 243352 299.0 + 0 ENSG00000264866.2 misc_RNA RF00017 3 +1449 GL000255.2 HAVANA gene 251781 253062 1032.0 + 0 ENSG00000225368.2 processed_transcript HCG15 2 OTTHUMG00000004765.1 overlapping_locus +1450 GL000255.2 HAVANA gene 252378 254114 317.0 + 0 ENSG00000243286.1 processed_transcript AL929561.3 2 OTTHUMG00000004763.1 overlapping_locus +1451 GL000255.2 HAVANA gene 260363 270894 3176.0 - 0 ENSG00000169260.11 protein_coding ZNF311 2 OTTHUMG00000004913.1 +1452 GL000255.2 HAVANA gene 292258 293185 928.0 - 0 ENSG00000237043.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000005024.1 +1453 GL000255.2 HAVANA gene 309791 310818 1028.0 - 0 ENSG00000206525.2 protein_coding OR2W1 2 OTTHUMG00000004912.3 +1454 GL000255.2 HAVANA gene 337404 338179 776.0 - 0 ENSG00000235195.1 unprocessed_pseudogene OR2P1P 2 OTTHUMG00000005025.1 +1455 GL000255.2 ENSEMBL gene 329577 342104 414.0 + 0 ENSG00000278714.1 protein_coding AL929561.4 3 +1456 GL000255.2 HAVANA gene 342153 342748 596.0 - 0 ENSG00000226795.1 processed_pseudogene SAR1AP1 2 OTTHUMG00000005020.1 +1457 GL000255.2 HAVANA gene 351788 352893 1106.0 - 0 ENSG00000206524.3 protein_coding OR2B3 2 OTTHUMG00000004914.2 +1458 GL000255.2 HAVANA gene 366530 367468 939.0 + 0 ENSG00000206523.3 unprocessed_pseudogene OR2J1 2 OTTHUMG00000012768.3 +1459 GL000255.2 HAVANA gene 377476 378411 936.0 + 0 ENSG00000206522.1 protein_coding OR2J3 2 OTTHUMG00000004767.2 +1460 GL000255.2 HAVANA gene 389794 394492 389.0 + 0 ENSG00000225184.1 processed_transcript AL929561.1 2 OTTHUMG00000005007.1 +1461 GL000255.2 HAVANA gene 403461 404397 937.0 - 0 ENSG00000233506.2 unprocessed_pseudogene AL929561.2 2 OTTHUMG00000005029.1 +1462 GL000255.2 HAVANA gene 438893 440164 1272.0 + 0 ENSG00000234746.4 protein_coding OR2J2 2 OTTHUMG00000004769.3 +1463 GL000255.2 HAVANA gene 447108 448043 936.0 + 0 ENSG00000218297.2 unprocessed_pseudogene OR2J4P 2 OTTHUMG00000005026.1 +1464 GL000255.2 HAVANA gene 480860 481803 944.0 + 0 ENSG00000235401.1 unprocessed_pseudogene AL935156.1 2 OTTHUMG00000005027.1 +1465 GL000255.2 HAVANA gene 494851 495781 931.0 - 0 ENSG00000224392.1 unprocessed_pseudogene OR2G1P 2 OTTHUMG00000005028.1 +1466 GL000255.2 HAVANA gene 682752 683698 852.0 + 0 ENSG00000251547.1 unprocessed_pseudogene OR12D1 2 OTTHUMG00000005021.1 +1467 GL000255.2 HAVANA gene 688079 697436 218.0 - 0 ENSG00000240130.1 processed_transcript OR5V1 2 OTTHUMG00000004772.1 overlapping_locus +1468 GL000255.2 HAVANA gene 704775 706446 1672.0 + 0 ENSG00000220550.7 protein_coding OR10C1 2 OTTHUMG00000004779.3 +1469 GL000255.2 HAVANA gene 690974 722536 2864.0 - 0 ENSG00000206517.12 protein_coding OR11A1 2 OTTHUMG00000004773.1 overlapping_locus +1470 GL000255.2 HAVANA gene 722646 729794 3708.0 + 0 ENSG00000206516.10 protein_coding OR2H1 2 OTTHUMG00000004777.1 +1471 GL000255.2 HAVANA gene 730062 735272 382.0 - 0 ENSG00000224044.1 unprocessed_pseudogene UBDP1 2 OTTHUMG00000004775.1 +1472 GL000255.2 HAVANA gene 740491 741537 1047.0 - 0 ENSG00000227859.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000004771.1 +1473 GL000255.2 HAVANA gene 752232 753368 1137.0 - 0 ENSG00000206515.3 protein_coding MAS1L 2 OTTHUMG00000004776.2 +1474 GL000255.2 HAVANA gene 754738 755143 406.0 - 0 ENSG00000229439.3 processed_pseudogene RPS17P1 2 OTTHUMG00000004774.1 +1475 GL000255.2 HAVANA gene 762976 776022 877.0 + 0 ENSG00000232902.1 processed_transcript BX000531.1 2 OTTHUMG00000004780.1 +1476 GL000255.2 HAVANA gene 794891 799039 2777.0 + 0 ENSG00000226687.5 processed_transcript LINC01015 2 OTTHUMG00000004781.1 +1477 GL000255.2 HAVANA gene 803245 804035 791.0 - 0 ENSG00000224894.1 unprocessed_pseudogene GPR53P 2 OTTHUMG00000004789.1 +1478 GL000255.2 HAVANA gene 818717 819664 948.0 + 0 ENSG00000231973.2 unprocessed_pseudogene OR2I1P 2 OTTHUMG00000005037.1 +1479 GL000255.2 HAVANA gene 821111 825425 990.0 - 0 ENSG00000206513.2 protein_coding UBD 2 OTTHUMG00000004874.1 overlapping_locus +1480 GL000255.2 HAVANA gene 839421 840348 928.0 + 0 ENSG00000235630.2 unprocessed_pseudogene OR2H5P 2 OTTHUMG00000005042.1 +1481 GL000255.2 HAVANA gene 842971 843260 290.0 + 0 ENSG00000229737.2 processed_pseudogene TMEM183AP1 2 OTTHUMG00000005043.1 +1482 GL000255.2 ENSEMBL gene 847761 847844 84.0 + 0 ENSG00000266132.1 snoRNA SNORD32B 3 +1483 GL000255.2 HAVANA gene 848020 848537 518.0 + 0 ENSG00000206519.3 processed_pseudogene RPL13AP 2 OTTHUMG00000004873.1 +1484 GL000255.2 HAVANA gene 852967 854550 1584.0 + 0 ENSG00000206512.6 protein_coding OR2H2 2 OTTHUMG00000004872.1 +1485 GL000255.2 HAVANA gene 821111 898673 7011.0 - 0 ENSG00000206511.10 protein_coding GABBR1 2 OTTHUMG00000004871.1 overlapping_locus +1486 GL000255.2 HAVANA gene 901562 901845 284.0 - 0 ENSG00000234528.3 processed_pseudogene SUMO2P1 2 OTTHUMG00000005022.1 +1487 GL000255.2 HAVANA gene 922481 937873 3062.0 + 0 ENSG00000137345.19 protein_coding MOG 2 OTTHUMG00000004875.1 +1488 GL000255.2 HAVANA gene 937893 946603 2149.0 - 0 ENSG00000206510.9 protein_coding ZFP57 2 OTTHUMG00000004876.1 +1489 GL000255.2 HAVANA gene 973610 974032 423.0 - 0 ENSG00000228371.1 processed_pseudogene ZDHHC20P1 2 OTTHUMG00000005023.1 +1490 GL000255.2 HAVANA gene 986021 987011 991.0 - 0 ENSG00000224921.1 unprocessed_pseudogene AL844851.1 2 OTTHUMG00000004795.1 +1491 GL000255.2 HAVANA gene 989711 990181 471.0 - 0 ENSG00000239784.1 transcribed_processed_pseudogene RPL23AP1 2 OTTHUMG00000004782.1 overlapping_locus +1492 GL000255.2 HAVANA gene 985815 1001571 4340.0 + 0 ENSG00000206509.13 protein_coding HLA-F 2 OTTHUMG00000004783.2 +1493 GL000255.2 HAVANA gene 1011333 1011557 225.0 + 0 ENSG00000236619.1 unprocessed_pseudogene AL844851.2 2 OTTHUMG00000005038.1 +1494 GL000255.2 HAVANA gene 1004773 1012013 1029.0 - 0 ENSG00000251197.1 transcribed_unprocessed_pseudogene MICE 2 OTTHUMG00000004784.1 overlapping_locus +1495 GL000255.2 HAVANA gene 989643 1012093 4174.0 - 0 ENSG00000206508.9 processed_transcript HLA-F-AS1 2 OTTHUMG00000185971.1 overlapping_locus +1496 GL000255.2 ENSEMBL gene 1013414 1013515 102.0 + 0 ENSG00000265105.1 misc_RNA RF00019 3 +1497 GL000255.2 HAVANA gene 1013770 1014190 421.0 - 0 ENSG00000230722.1 processed_pseudogene IFITM4P 2 OTTHUMG00000004785.1 +1498 GL000255.2 HAVANA gene 1054738 1055712 975.0 - 0 ENSG00000237905.1 unprocessed_pseudogene HCG4 2 OTTHUMG00000004807.1 +1499 GL000255.2 HAVANA gene 1053845 1060565 5491.0 + 0 ENSG00000206444.9 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000005044.1 +1500 GL000255.2 HAVANA gene 1063190 1065194 731.0 + 0 ENSG00000260638.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172784.1 +1501 GL000255.2 HAVANA gene 1065969 1066765 797.0 - 0 ENSG00000233113.4 processed_pseudogene RPL7AP7 2 OTTHUMG00000004787.1 +1502 GL000255.2 HAVANA gene 1075334 1075465 132.0 - 0 ENSG00000224355.1 unprocessed_pseudogene MICG 2 OTTHUMG00000004788.1 +1503 GL000255.2 HAVANA gene 1090151 1091129 979.0 - 0 ENSG00000225023.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000004797.1 +1504 GL000255.2 HAVANA gene 1089733 1093907 1838.0 + 0 ENSG00000206506.10 protein_coding HLA-G 2 OTTHUMG00000005008.2 +1505 GL000255.2 HAVANA gene 1114902 1115030 129.0 - 0 ENSG00000232253.1 unprocessed_pseudogene BX001005.1 2 OTTHUMG00000004791.1 +1506 GL000255.2 HAVANA gene 1144168 1145136 969.0 - 0 ENSG00000230419.1 unprocessed_pseudogene AL845454.1 2 OTTHUMG00000004800.1 +1507 GL000255.2 HAVANA gene 1144626 1147347 1088.0 + 0 ENSG00000227296.4 unprocessed_pseudogene HLA-H 2 OTTHUMG00000004790.1 +1508 GL000255.2 HAVANA gene 1153422 1154553 461.0 + 0 ENSG00000229552.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000004801.1 +1509 GL000255.2 HAVANA gene 1163382 1163748 192.0 + 0 ENSG00000236441.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000004796.1 +1510 GL000255.2 HAVANA gene 1164624 1165483 325.0 - 0 ENSG00000229411.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000004798.1 +1511 GL000255.2 HAVANA gene 1182772 1183762 991.0 - 0 ENSG00000220391.4 unprocessed_pseudogene HCG4B 2 OTTHUMG00000004809.1 +1512 GL000255.2 HAVANA gene 1183248 1186022 1051.0 + 0 ENSG00000224526.1 unprocessed_pseudogene HLA-K 2 OTTHUMG00000004808.1 +1513 GL000255.2 HAVANA gene 1189133 1189317 185.0 + 0 ENSG00000229428.1 unprocessed_pseudogene HLA-U 2 OTTHUMG00000004805.1 +1514 GL000255.2 HAVANA gene 1197034 1198026 993.0 - 0 ENSG00000235952.1 unprocessed_pseudogene AL845454.2 2 OTTHUMG00000004802.1 +1515 GL000255.2 HAVANA gene 1211579 1213553 1043.0 + 0 ENSG00000228029.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000004804.2 +1516 GL000255.2 HAVANA gene 1225784 1227447 813.0 - 0 ENSG00000232345.1 unprocessed_pseudogene MICD 2 OTTHUMG00000004803.1 +1517 GL000255.2 HAVANA gene 1230085 1233386 663.0 + 0 ENSG00000206504.2 processed_transcript HCG9 2 OTTHUMG00000004806.1 +1518 GL000255.2 HAVANA gene 1248209 1248604 257.0 + 0 ENSG00000234140.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000004799.1 +1519 GL000255.2 HAVANA gene 1249436 1250313 335.0 - 0 ENSG00000234970.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000004792.1 +1520 GL000255.2 HAVANA gene 1261218 1262214 997.0 - 0 ENSG00000237884.1 unprocessed_pseudogene AL845454.3 2 OTTHUMG00000004794.1 overlapping_locus +1521 GL000255.2 HAVANA gene 1196218 1264879 6825.0 + 0 ENSG00000206505.13 protein_coding HLA-A 2 OTTHUMG00000004793.1 +1522 GL000255.2 HAVANA gene 1261681 1265040 1620.0 + 0 ENSG00000243336.5 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000004810.1 +1523 GL000255.2 HAVANA gene 1286839 1288128 983.0 + 0 ENSG00000232516.1 processed_pseudogene ETF1P1 2 OTTHUMG00000004881.1 +1524 GL000255.2 ENSEMBL gene 1291045 1291112 68.0 + 0 ENSG00000278511.1 misc_RNA RF02218 3 +1525 GL000255.2 ENSEMBL gene 1313293 1313368 76.0 + 0 ENSG00000278397.1 misc_RNA RF02219 3 +1526 GL000255.2 ENSEMBL gene 1316262 1316365 104.0 + 0 ENSG00000275133.1 misc_RNA RF02220 3 +1527 GL000255.2 HAVANA gene 1256106 1316823 19546.0 - 0 ENSG00000235814.6 antisense ZNRD1ASP 2 OTTHUMG00000004811.1 overlapping_locus +1528 GL000255.2 HAVANA gene 1314080 1320070 3674.0 + 0 ENSG00000206502.8 protein_coding ZNRD1 2 OTTHUMG00000004887.1 ncRNA_host +1529 GL000255.2 HAVANA gene 1321869 1325493 2541.0 + 0 ENSG00000206501.8 protein_coding PPP1R11 2 OTTHUMG00000004884.2 +1530 GL000255.2 HAVANA gene 1325430 1331006 2161.0 - 0 ENSG00000206500.9 protein_coding RNF39 2 OTTHUMG00000004882.1 +1531 GL000255.2 HAVANA gene 1358044 1368247 3537.0 - 0 ENSG00000137397.18 protein_coding TRIM31 2 OTTHUMG00000004885.1 +1532 GL000255.2 HAVANA gene 1360387 1369865 549.0 + 0 ENSG00000229223.1 processed_transcript TRIM31-AS1 2 OTTHUMG00000004813.1 +1533 GL000255.2 ENSEMBL gene 1387944 1388104 161.0 - 0 ENSG00000265602.1 snoRNA RF00554 3 +1534 GL000255.2 HAVANA gene 1391236 1403864 2497.0 + 0 ENSG00000172524.12 protein_coding TRIM40 2 OTTHUMG00000004883.1 +1535 GL000255.2 HAVANA gene 1407074 1416062 3546.0 - 0 ENSG00000137394.14 protein_coding TRIM10 2 OTTHUMG00000004886.1 +1536 GL000255.2 HAVANA gene 1418334 1427824 2515.0 + 0 ENSG00000137384.12 protein_coding TRIM15 2 OTTHUMG00000004812.2 +1537 GL000255.2 HAVANA gene 1441894 1443718 1203.0 - 0 ENSG00000228227.1 processed_pseudogene PAIP1P1 2 OTTHUMG00000004814.1 overlapping_locus +1538 GL000255.2 HAVANA gene 1439551 1468529 4377.0 - 0 ENSG00000137313.15 protein_coding TRIM26 2 OTTHUMG00000005013.3 overlapping_locus +1539 GL000255.2 HAVANA gene 1493397 1497373 753.0 + 0 ENSG00000235923.1 unprocessed_pseudogene TRIM26BP 2 OTTHUMG00000004815.1 +1540 GL000255.2 HAVANA gene 1514692 1522009 4731.0 + 0 ENSG00000244721.6 transcribed_unprocessed_pseudogene HLA-L 2 OTTHUMG00000004823.1 +1541 GL000255.2 HAVANA gene 1489135 1581209 759.0 - 0 ENSG00000244695.5 processed_transcript HCG17 2 OTTHUMG00000004828.1 overlapping_locus +1542 GL000255.2 HAVANA gene 1545887 1582225 5633.0 - 0 ENSG00000234893.6 processed_transcript HCG18 2 OTTHUMG00000004818.1 overlapping_locus +1543 GL000255.2 HAVANA gene 1581554 1598811 4226.0 + 0 ENSG00000206495.12 protein_coding TRIM39 2 OTTHUMG00000004826.2 +1544 GL000255.2 HAVANA gene 1584387 1601966 2717.0 + 0 ENSG00000242726.6 protein_coding RPP21 2 OTTHUMG00000004817.1 +1545 GL000255.2 HAVANA gene 1606498 1606632 135.0 + 0 ENSG00000236688.1 unprocessed_pseudogene HLA-N 2 OTTHUMG00000005039.1 +1546 GL000255.2 HAVANA gene 1614360 1614993 634.0 - 0 ENSG00000227100.1 processed_pseudogene AL773535.1 2 OTTHUMG00000004819.1 +1547 GL000255.2 HAVANA gene 1618190 1619358 1169.0 - 0 ENSG00000236122.1 processed_pseudogene UBQLN1P1 2 OTTHUMG00000004821.1 +1548 GL000255.2 HAVANA gene 1669800 1674405 1055.0 + 0 ENSG00000237034.1 unprocessed_pseudogene MICC 2 OTTHUMG00000004825.1 +1549 GL000255.2 HAVANA gene 1721634 1723163 1267.0 + 0 ENSG00000235223.1 processed_pseudogene TMPOP1 2 OTTHUMG00000004827.1 +1550 GL000255.2 HAVANA gene 1723982 1725351 1370.0 + 0 ENSG00000223693.3 processed_pseudogene SUCLA2P1 2 OTTHUMG00000004816.1 +1551 GL000255.2 HAVANA gene 1741039 1741689 651.0 + 0 ENSG00000229038.4 processed_pseudogene RANP1 2 OTTHUMG00000004822.1 +1552 GL000255.2 HAVANA gene 1744563 1749301 2975.0 + 0 ENSG00000206493.7 protein_coding HLA-E 2 OTTHUMG00000004820.1 +1553 GL000255.2 HAVANA gene 1771353 1774307 851.0 + 0 ENSG00000236934.1 processed_transcript LINC02569 2 OTTHUMG00000004916.1 +1554 GL000255.2 HAVANA gene 1796461 1812259 8646.0 - 0 ENSG00000206492.11 protein_coding GNL1 2 OTTHUMG00000004918.2 +1555 GL000255.2 HAVANA gene 1811971 1818808 4281.0 + 0 ENSG00000206491.12 protein_coding PRR3 2 OTTHUMG00000004919.1 +1556 GL000255.2 HAVANA gene 1826463 1852267 4340.0 + 0 ENSG00000206490.11 protein_coding ABCF1 2 OTTHUMG00000004922.1 +1557 GL000255.2 HAVANA gene 1855489 1873700 5214.0 - 0 ENSG00000206489.9 protein_coding PPP1R10 2 OTTHUMG00000004917.1 +1558 GL000255.2 HAVANA gene 1872797 1881483 1888.0 + 0 ENSG00000203624.10 protein_coding MRPS18B 2 OTTHUMG00000004921.1 +1559 GL000255.2 HAVANA gene 1888717 1888986 270.0 + 0 ENSG00000235757.4 processed_pseudogene PTMAP1 2 OTTHUMG00000004920.1 overlapping_locus +1560 GL000255.2 HAVANA gene 1881930 1901911 4035.0 + 0 ENSG00000206488.10 protein_coding ATAT1 2 OTTHUMG00000004923.1 overlapping_locus +1561 GL000255.2 HAVANA gene 1902127 1908191 1863.0 + 0 ENSG00000206487.11 protein_coding C6orf136 2 OTTHUMG00000004824.1 +1562 GL000255.2 HAVANA gene 1908201 1928150 4008.0 - 0 ENSG00000206486.8 protein_coding DHX16 2 OTTHUMG00000004839.2 +1563 GL000255.2 HAVANA gene 1931503 1943009 4599.0 - 0 ENSG00000206485.10 protein_coding PPP1R18 2 OTTHUMG00000004836.1 +1564 GL000255.2 HAVANA gene 1943161 1946534 2045.0 - 0 ENSG00000206484.10 protein_coding NRM 2 OTTHUMG00000004847.1 +1565 GL000255.2 HAVANA gene 1951919 1952648 730.0 - 0 ENSG00000238255.1 processed_pseudogene RPL7P4 2 OTTHUMG00000004844.1 +1566 GL000255.2 HAVANA gene 1958181 1968296 738.0 + 0 ENSG00000227899.1 processed_transcript MDC1-AS1 2 OTTHUMG00000004829.1 +1567 GL000255.2 HAVANA gene 1954920 1973001 7981.0 - 0 ENSG00000206481.11 protein_coding MDC1 2 OTTHUMG00000004846.2 +1568 GL000255.2 HAVANA gene 1975313 1980539 3360.0 + 0 ENSG00000183311.16 protein_coding TUBB 2 OTTHUMG00000004838.1 +1569 GL000255.2 ENSEMBL gene 1991421 1991531 111.0 - 0 ENSG00000265955.1 misc_RNA RF00019 3 +1570 GL000255.2 HAVANA gene 1982822 1997843 3186.0 - 0 ENSG00000206480.11 protein_coding FLOT1 2 OTTHUMG00000004837.2 ncRNA_host +1571 GL000255.2 HAVANA gene 1998309 1999664 1356.0 - 0 ENSG00000206478.5 protein_coding IER3 2 OTTHUMG00000004845.1 +1572 GL000255.2 ENSEMBL gene 2006130 2006381 252.0 + 0 ENSG00000264688.2 misc_RNA RF00017 3 +1573 GL000255.2 HAVANA gene 2021918 2047334 1371.0 + 0 ENSG00000224133.5 processed_transcript HCG20 2 OTTHUMG00000004851.1 +1574 GL000255.2 HAVANA gene 2053740 2085765 2175.0 - 0 ENSG00000215523.7 processed_transcript AL773551.1 2 OTTHUMG00000004834.1 +1575 GL000255.2 HAVANA gene 2094625 2103263 799.0 - 0 ENSG00000225888.1 processed_transcript LINC02570 2 OTTHUMG00000004843.1 +1576 GL000255.2 ENSEMBL gene 2119426 2119728 303.0 + 0 ENSG00000264415.1 misc_RNA RF00100 3 +1577 GL000255.2 HAVANA gene 2122156 2131089 3987.0 - 0 ENSG00000223405.1 processed_transcript DDR1-DT 2 OTTHUMG00000004830.1 +1578 GL000255.2 HAVANA gene 2136143 2155326 5689.0 + 0 ENSG00000215522.11 protein_coding DDR1 2 OTTHUMG00000004835.2 +1579 GL000255.2 HAVANA gene 2163350 2169272 2353.0 + 0 ENSG00000221974.11 protein_coding GTF2H4 2 OTTHUMG00000004841.2 overlapping_locus +1580 GL000255.2 ENSEMBL gene 2169371 2181633 4070.0 + 0 ENSG00000285213.1 protein_coding VARS2 3 +1581 GL000255.2 HAVANA gene 2163408 2181636 8458.0 + 0 ENSG00000206476.14 protein_coding VARS2 2 OTTHUMG00000004840.2 overlapping_locus +1582 GL000255.2 HAVANA gene 2186505 2187327 691.0 - 0 ENSG00000206465.4 protein_coding SFTA2 2 OTTHUMG00000004848.1 +1583 GL000255.2 ENSEMBL gene 2187771 2187862 92.0 - 0 ENSG00000264602.1 misc_RNA RF00019 3 +1584 GL000255.2 HAVANA gene 2196154 2209373 3573.0 + 0 ENSG00000229284.4 protein_coding MUCL3 2 OTTHUMG00000004842.1 +1585 GL000255.2 HAVANA gene 2201132 2210014 605.0 - 0 ENSG00000230541.1 processed_transcript HCG21 2 OTTHUMG00000004832.1 +1586 GL000255.2 HAVANA gene 2238874 2245269 3983.0 + 0 ENSG00000206463.7 protein_coding MUC21 2 OTTHUMG00000004849.1 +1587 GL000255.2 HAVANA gene 2266087 2291039 6019.0 + 0 ENSG00000229199.5 processed_transcript AL805909.1 2 OTTHUMG00000004831.1 +1588 GL000255.2 HAVANA gene 2311782 2317853 1671.0 + 0 ENSG00000227974.2 transcribed_unprocessed_pseudogene HCG22 2 OTTHUMG00000004850.2 +1589 GL000255.2 ENSEMBL gene 2341017 2341116 100.0 + 0 ENSG00000266375.1 snRNA RF00026 3 +1590 GL000255.2 HAVANA gene 2369222 2370558 1140.0 - 0 ENSG00000206461.4 protein_coding C6orf15 2 OTTHUMG00000004855.1 +1591 GL000255.2 HAVANA gene 2373089 2378448 2549.0 - 0 ENSG00000206460.4 protein_coding CDSN 2 OTTHUMG00000004858.1 +1592 GL000255.2 HAVANA gene 2395562 2397376 1151.0 - 0 ENSG00000206459.2 protein_coding PSORS1C2 2 OTTHUMG00000004852.1 +1593 GL000255.2 HAVANA gene 2372749 2398063 4683.0 + 0 ENSG00000206458.10 protein_coding PSORS1C1 2 OTTHUMG00000149948.2 +1594 GL000255.2 HAVANA gene 2398759 2398945 187.0 + 0 ENSG00000237545.1 processed_pseudogene POLR2LP1 2 OTTHUMG00000004854.1 +1595 GL000255.2 HAVANA gene 2400454 2416245 4556.0 - 0 ENSG00000206457.10 protein_coding CCHCR1 2 OTTHUMG00000149954.4 +1596 GL000255.2 HAVANA gene 2416574 2422248 3291.0 + 0 ENSG00000206455.8 protein_coding TCF19 2 OTTHUMG00000149950.1 +1597 GL000255.2 HAVANA gene 2422370 2428743 1895.0 - 0 ENSG00000206454.12 protein_coding POU5F1 2 OTTHUMG00000149946.1 +1598 GL000255.2 HAVANA gene 2431785 2435950 593.0 - 0 ENSG00000224744.1 processed_transcript PSORS1C3 2 OTTHUMG00000004859.1 +1599 GL000255.2 HAVANA gene 2458195 2459954 516.0 - 0 ENSG00000223868.1 processed_transcript AL845458.1 2 OTTHUMG00000004857.1 +1600 GL000255.2 HAVANA gene 2455784 2461996 1804.0 + 0 ENSG00000220890.3 processed_transcript HCG27 2 OTTHUMG00000004833.1 +1601 GL000255.2 HAVANA gene 2524181 2527552 2569.0 - 0 ENSG00000206452.10 protein_coding HLA-C 2 OTTHUMG00000149943.3 +1602 GL000255.2 HAVANA gene 2530965 2534137 3173.0 + 0 ENSG00000228904.3 processed_pseudogene USP8P1 2 OTTHUMG00000004869.1 +1603 GL000255.2 HAVANA gene 2535700 2536899 1200.0 + 0 ENSG00000223927.1 processed_pseudogene RPL3P2 2 OTTHUMG00000004868.1 +1604 GL000255.2 HAVANA gene 2543176 2544627 1452.0 - 0 ENSG00000225954.1 processed_pseudogene WASF5P 2 OTTHUMG00000004867.1 +1605 GL000255.2 HAVANA gene 2563513 2564247 306.0 - 0 ENSG00000225571.1 unprocessed_pseudogene AL845443.1 2 OTTHUMG00000004866.1 +1606 GL000255.2 HAVANA gene 2524921 2612898 2704.0 - 0 ENSG00000206450.11 protein_coding HLA-B 2 OTTHUMG00000149955.2 +1607 GL000255.2 HAVANA gene 2622041 2622587 547.0 - 0 ENSG00000236851.1 processed_pseudogene DHFRP2 2 OTTHUMG00000004860.1 +1608 GL000255.2 ENSEMBL gene 2625827 2625933 107.0 + 0 ENSG00000266886.1 snRNA RF00026 3 +1609 GL000255.2 HAVANA gene 2633109 2633706 598.0 + 0 ENSG00000232276.1 processed_pseudogene AL845443.2 2 OTTHUMG00000004861.1 +1610 GL000255.2 HAVANA gene 2636103 2636529 427.0 + 0 ENSG00000231773.1 processed_pseudogene ZDHHC20P2 2 OTTHUMG00000004862.1 +1611 GL000255.2 HAVANA gene 2637753 2637967 53.0 - 0 ENSG00000237559.1 unprocessed_pseudogene HLA-S 2 OTTHUMG00000004865.1 +1612 GL000255.2 ENSEMBL gene 2657779 2657877 99.0 - 0 ENSG00000265896.1 misc_RNA RF00019 3 +1613 GL000255.2 HAVANA gene 2655411 2671966 3831.0 + 0 ENSG00000183214.12 protein_coding MICA 2 OTTHUMG00000149951.2 +1614 GL000255.2 ENSEMBL gene 2752589 2752690 102.0 - 0 ENSG00000265852.1 misc_RNA RF00019 3 +1615 GL000255.2 HAVANA gene 2753986 2767002 2675.0 + 0 ENSG00000206449.11 protein_coding MICB 2 OTTHUMG00000149949.1 +1616 GL000255.2 HAVANA gene 2775356 2776167 498.0 - 0 ENSG00000225317.3 processed_pseudogene PPIAP9 2 OTTHUMG00000004877.1 +1617 GL000255.2 HAVANA gene 2783976 2784555 580.0 + 0 ENSG00000232572.1 processed_pseudogene RPL15P4 2 OTTHUMG00000004879.1 +1618 GL000255.2 HAVANA gene 2784579 2786094 955.0 + 0 ENSG00000206447.2 protein_coding MCCD1 2 OTTHUMG00000004878.1 +1619 GL000255.2 ENSEMBL gene 2792235 2792310 76.0 - 0 ENSG00000266295.1 snoRNA SNORD117 3 +1620 GL000255.2 ENSEMBL gene 2796957 2797034 78.0 - 0 ENSG00000266646.1 snoRNA SNORD84 3 +1621 GL000255.2 HAVANA gene 2798160 2798994 527.0 + 0 ENSG00000238071.1 processed_transcript DDX39B-AS1 2 OTTHUMG00000004870.1 +1622 GL000255.2 HAVANA gene 2786081 2802434 6913.0 - 0 ENSG00000215425.11 protein_coding DDX39B 2 OTTHUMG00000149942.4 ncRNA_host,overlapping_locus +1623 GL000255.2 HAVANA gene 2800318 2802700 1652.0 - 0 ENSG00000206445.4 protein_coding ATP6V1G2 2 OTTHUMG00000149944.1 overlapping_locus +1624 GL000255.2 HAVANA gene 2802722 2814673 1779.0 + 0 ENSG00000206440.10 protein_coding NFKBIL1 2 OTTHUMG00000149941.3 +1625 GL000255.2 HAVANA gene 2827871 2830143 1737.0 + 0 ENSG00000173503.12 protein_coding LTA 2 OTTHUMG00000004910.1 +1626 GL000255.2 HAVANA gene 2831386 2834157 1676.0 + 0 ENSG00000206439.5 protein_coding TNF 2 OTTHUMG00000004889.1 +1627 GL000255.2 HAVANA gene 2836376 2838343 926.0 - 0 ENSG00000206437.10 protein_coding LTB 2 OTTHUMG00000149956.1 +1628 GL000255.2 HAVANA gene 2841945 2844732 2296.0 + 0 ENSG00000206433.10 protein_coding LST1 2 OTTHUMG00000149937.2 +1629 GL000255.2 HAVANA gene 2844718 2848806 1212.0 - 0 ENSG00000206430.8 protein_coding NCR3 2 OTTHUMG00000004898.2 +1630 GL000255.2 HAVANA gene 2866906 2867179 274.0 - 0 ENSG00000229189.1 processed_pseudogene UQCRHP1 2 OTTHUMG00000004892.1 +1631 GL000255.2 HAVANA gene 2871006 2872843 1320.0 + 0 ENSG00000206428.9 protein_coding AIF1 2 OTTHUMG00000004900.1 +1632 GL000255.2 ENSEMBL gene 2878898 2879029 132.0 + 0 ENSG00000264153.1 snoRNA SNORA38 3 +1633 GL000255.2 HAVANA gene 2876542 2893589 9115.0 + 0 ENSG00000206427.11 protein_coding PRRC2A 2 OTTHUMG00000004895.1 ncRNA_host +1634 GL000255.2 HAVANA gene 2894841 2908524 5344.0 - 0 ENSG00000096155.15 protein_coding BAG6 2 OTTHUMG00000149936.3 +1635 GL000255.2 HAVANA gene 2908235 2914028 1237.0 + 0 ENSG00000206409.8 protein_coding APOM 2 OTTHUMG00000004901.2 +1636 GL000255.2 HAVANA gene 2914147 2916539 673.0 + 0 ENSG00000224835.1 processed_transcript C6orf47-AS1 2 OTTHUMG00000004888.1 +1637 GL000255.2 HAVANA gene 2914116 2916590 2475.0 - 0 ENSG00000203623.4 protein_coding C6orf47 2 OTTHUMG00000004903.1 +1638 GL000255.2 ENSEMBL gene 2919112 2919225 114.0 + 0 ENSG00000265278.1 misc_RNA RF00019 3 +1639 GL000255.2 HAVANA gene 2917047 2922107 3533.0 - 0 ENSG00000206408.8 protein_coding GPANK1 2 OTTHUMG00000149947.3 +1640 GL000255.2 HAVANA gene 2924942 2929370 2644.0 + 0 ENSG00000239285.7 protein_coding LY6G5B 2 OTTHUMG00000005016.1 overlapping_locus +1641 GL000255.2 HAVANA gene 2921060 2929370 4549.0 + 0 ENSG00000206406.9 protein_coding CSNK2B 2 OTTHUMG00000149945.1 overlapping_locus +1642 GL000255.2 HAVANA gene 2932508 2939860 2828.0 - 0 ENSG00000206404.11 protein_coding LY6G5C 2 OTTHUMG00000004902.1 +1643 GL000255.2 HAVANA gene 2942773 2959248 3850.0 - 0 ENSG00000206403.11 protein_coding ABHD16A 2 OTTHUMG00000149953.2 +1644 GL000255.2 HAVANA gene 2962702 2966413 920.0 + 0 ENSG00000243804.1 protein_coding LY6G6F 2 OTTHUMG00000004907.1 overlapping_locus +1645 GL000255.2 HAVANA gene 2968156 2969632 506.0 - 0 ENSG00000206401.11 protein_coding LY6G6E 2 OTTHUMG00000004908.1 +1646 GL000255.2 HAVANA gene 2962721 2973732 1533.0 + 0 ENSG00000206402.10 protein_coding LY6G6D 2 OTTHUMG00000005019.2 overlapping_locus +1647 GL000255.2 HAVANA gene 2974462 2977659 1103.0 - 0 ENSG00000206398.5 protein_coding LY6G6C 2 OTTHUMG00000004911.2 +1648 GL000255.2 HAVANA gene 2974408 2982521 2860.0 + 0 ENSG00000206396.9 protein_coding MPIG6B 2 OTTHUMG00000004906.1 +1649 GL000255.2 HAVANA gene 2982849 2986428 2538.0 - 0 ENSG00000206395.8 protein_coding DDAH2 2 OTTHUMG00000004924.2 overlapping_locus +1650 GL000255.2 HAVANA gene 2986392 2995582 1942.0 - 0 ENSG00000206394.8 protein_coding CLIC1 2 OTTHUMG00000004893.1 overlapping_locus +1651 GL000255.2 ENSEMBL gene 3012773 3012875 103.0 - 0 ENSG00000264556.1 snRNA RF00026 3 +1652 GL000255.2 HAVANA gene 2995810 3017580 4696.0 + 0 ENSG00000235569.12 protein_coding MSH5 2 OTTHUMG00000149938.2 +1653 GL000255.2 HAVANA gene 3047437 3051780 1975.0 - 0 ENSG00000227686.7 protein_coding VARS 2 OTTHUMG00000149940.3 +1654 GL000255.2 HAVANA gene 3053222 3062802 1119.0 - 0 ENSG00000172850.11 protein_coding LSM2 2 OTTHUMG00000149939.1 +1655 GL000255.2 HAVANA gene 3065448 3070893 2544.0 - 0 ENSG00000206383.8 protein_coding HSPA1L 2 OTTHUMG00000004929.1 +1656 GL000255.2 HAVANA gene 3071292 3073774 2483.0 + 0 ENSG00000215328.6 protein_coding HSPA1A 2 OTTHUMG00000004928.1 +1657 GL000255.2 HAVANA gene 3083567 3086091 2525.0 + 0 ENSG00000212866.6 protein_coding HSPA1B 2 OTTHUMG00000004926.1 +1658 GL000255.2 ENSEMBL gene 3091103 3091165 63.0 + 0 ENSG00000265732.1 snoRNA SNORD48 3 +1659 GL000255.2 ENSEMBL gene 3092913 3092979 67.0 + 0 ENSG00000265156.1 snoRNA SNORD52 3 +1660 GL000255.2 HAVANA gene 3090448 3095602 1803.0 + 0 ENSG00000206380.11 protein_coding C6orf48 2 OTTHUMG00000149952.1 ncRNA_host +1661 GL000255.2 HAVANA gene 3113631 3118878 4822.0 - 0 ENSG00000184494.8 protein_coding NEU1 2 OTTHUMG00000004927.2 +1662 GL000255.2 HAVANA gene 3119164 3135019 3178.0 - 0 ENSG00000206378.10 protein_coding SLC44A4 2 OTTHUMG00000149957.3 +1663 GL000255.2 HAVANA gene 3139733 3140026 223.0 + 0 ENSG00000231869.1 processed_transcript AL844853.1 2 OTTHUMG00000004931.1 overlapping_locus +1664 GL000255.2 HAVANA gene 3135732 3153671 7301.0 - 0 ENSG00000206376.9 protein_coding EHMT2 2 OTTHUMG00000004937.4 +1665 GL000255.2 HAVANA gene 3155580 3157967 1877.0 - 0 ENSG00000206366.6 protein_coding ZBTB12 2 OTTHUMG00000004933.1 +1666 GL000255.2 HAVANA gene 3190423 3197688 777.0 - 0 ENSG00000235250.1 processed_transcript C4B-AS1 2 OTTHUMG00000004936.1 +1667 GL000255.2 HAVANA gene 3153757 3201649 5542.0 + 0 ENSG00000206372.11 protein_coding C2 2 OTTHUMG00000004932.5 overlapping_locus +1668 GL000255.2 HAVANA gene 3201625 3208059 4538.0 + 0 ENSG00000241253.8 protein_coding CFB 2 OTTHUMG00000004992.2 overlapping_locus +1669 GL000255.2 HAVANA gene 3208062 3215062 2701.0 - 0 ENSG00000206357.11 protein_coding NELFE 2 OTTHUMG00000004938.4 +1670 GL000255.2 HAVANA gene 3215050 3225721 5561.0 + 0 ENSG00000206353.11 protein_coding SKIV2L 2 OTTHUMG00000004939.2 overlapping_locus +1671 GL000255.2 HAVANA gene 3225780 3228262 2483.0 - 0 ENSG00000206346.8 protein_coding DXO 2 OTTHUMG00000004934.2 +1672 GL000255.2 HAVANA gene 3227145 3237417 3546.0 + 0 ENSG00000206342.12 protein_coding STK19 2 OTTHUMG00000004935.4 overlapping_locus +1673 GL000255.2 HAVANA gene 3228351 3238792 1101.0 + 0 ENSG00000272295.1 protein_coding AL844853.2 2 OTTHUMG00000185380.1 overlapping_locus +1674 GL000255.2 HAVANA gene 3237995 3258653 6923.0 + 0 ENSG00000206340.10 protein_coding C4A 2 OTTHUMG00000012597.4 overlapping_locus +1675 GL000255.2 HAVANA gene 3255964 3259493 2079.0 - 0 ENSG00000230075.1 processed_transcript C4A-AS1 2 OTTHUMG00000137498.1 +1676 GL000255.2 HAVANA gene 3116207 3264905 2643.0 + 0 ENSG00000206338.9 protein_coding CYP21A2 2 OTTHUMG00000012646.5 overlapping_locus +1677 GL000255.2 ENSEMBL gene 3301713 3301833 121.0 - 0 ENSG00000266035.1 rRNA RF00001 3 +1678 GL000255.2 HAVANA gene 3264389 3309322 11157.0 - 0 ENSG00000229353.10 protein_coding TNXB 2 OTTHUMG00000012679.5 ncRNA_host +1679 GL000255.2 HAVANA gene 3371556 3377567 4260.0 - 0 ENSG00000206331.11 protein_coding PRRT1 2 OTTHUMG00000012776.4 +1680 GL000255.2 HAVANA gene 3376635 3386881 2927.0 + 0 ENSG00000206329.15 protein_coding PPT2 2 OTTHUMG00000166527.3 overlapping_locus +1681 GL000255.2 HAVANA gene 3387784 3391482 2621.0 + 0 ENSG00000244444.6 protein_coding EGFL8 2 OTTHUMG00000012664.7 overlapping_locus +1682 GL000255.2 HAVANA gene 3377039 3395179 5389.0 + 0 ENSG00000254875.8 protein_coding PPT2-EGFL8 2 OTTHUMG00000012711.9 overlapping_locus +1683 GL000255.2 HAVANA gene 3391413 3401297 3631.0 - 0 ENSG00000206324.11 protein_coding AGPAT1 2 OTTHUMG00000012643.3 +1684 GL000255.2 HAVANA gene 3401555 3403994 1178.0 + 0 ENSG00000183574.12 protein_coding RNF5 2 OTTHUMG00000012692.2 +1685 GL000255.2 HAVANA gene 3404169 3407525 2077.0 - 0 ENSG00000206320.12 protein_coding AGER 2 OTTHUMG00000012746.5 +1686 GL000255.2 HAVANA gene 3407934 3413385 4350.0 - 0 ENSG00000206315.9 protein_coding PBX2 2 OTTHUMG00000012735.3 +1687 GL000255.2 HAVANA gene 3413965 3418722 1854.0 - 0 ENSG00000206314.9 protein_coding GPSM3 2 OTTHUMG00000012700.4 overlapping_locus +1688 GL000255.2 HAVANA gene 3418042 3447269 9748.0 - 0 ENSG00000206312.7 protein_coding NOTCH4 2 OTTHUMG00000012612.3 overlapping_locus +1689 GL000255.2 HAVANA gene 3548601 3549560 960.0 + 0 ENSG00000235171.1 processed_pseudogene HNRNPA1P2 2 OTTHUMG00000012793.4 +1690 GL000255.2 ENSEMBL gene 3575920 3576026 107.0 + 0 ENSG00000265920.1 snRNA RF00026 3 +1691 GL000255.2 HAVANA gene 3516098 3594956 2308.0 - 0 ENSG00000206310.8 protein_coding C6orf10 2 OTTHUMG00000012724.4 +1692 GL000255.2 HAVANA gene 3613550 3616725 610.0 + 0 ENSG00000228738.1 processed_transcript HCG23 2 OTTHUMG00000012648.2 +1693 GL000255.2 HAVANA gene 3617002 3630176 1470.0 - 0 ENSG00000229597.7 protein_coding BTNL2 2 OTTHUMG00000012716.4 +1694 GL000255.2 HAVANA gene 3662891 3668101 1280.0 + 0 ENSG00000206308.11 protein_coding HLA-DRA 2 OTTHUMG00000012742.5 +1695 GL000255.2 HAVANA gene 3682909 3696591 343.0 - 0 ENSG00000226035.2 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000012613.6 +1696 GL000255.2 ENSEMBL gene 3712785 3712933 149.0 - 0 ENSG00000266884.1 snRNA RF00003 3 +1697 GL000255.2 HAVANA gene 3715358 3728445 1178.0 - 0 ENSG00000196101.9 protein_coding HLA-DRB3 2 OTTHUMG00000012609.5 +1698 GL000255.2 ENSEMBL gene 3750635 3750781 147.0 - 0 ENSG00000264389.1 snRNA RF00003 3 +1699 GL000255.2 HAVANA gene 3754058 3768545 503.0 - 0 ENSG00000227442.1 unprocessed_pseudogene HLA-DRB2 2 OTTHUMG00000012608.3 +1700 GL000255.2 ENSEMBL gene 3776541 3776687 147.0 - 0 ENSG00000266689.1 snRNA RF00003 3 +1701 GL000255.2 HAVANA gene 3779004 3809621 1431.0 - 0 ENSG00000206306.10 protein_coding HLA-DRB1 2 OTTHUMG00000012607.4 +1702 GL000255.2 HAVANA gene 3836385 3842664 1522.0 + 0 ENSG00000206305.12 protein_coding HLA-DQA1 2 OTTHUMG00000012723.3 +1703 GL000255.2 HAVANA gene 3853786 3854634 550.0 + 0 ENSG00000233744.1 processed_transcript HLA-DQB1-AS1 2 OTTHUMG00000140105.1 +1704 GL000255.2 HAVANA gene 3853791 3856386 310.0 - 0 ENSG00000240110.1 processed_transcript AL935026.1 2 OTTHUMG00000140106.1 overlapping_locus +1705 GL000255.2 HAVANA gene 3853335 3860946 1649.0 - 0 ENSG00000206302.10 protein_coding HLA-DQB1 2 OTTHUMG00000012751.2 overlapping_locus +1706 GL000255.2 HAVANA gene 3900399 3901230 832.0 - 0 ENSG00000229710.1 unprocessed_pseudogene MTCO3P1 2 OTTHUMG00000012745.4 +1707 GL000255.2 HAVANA gene 3912257 3913087 445.0 + 0 ENSG00000230150.1 processed_transcript AL773543.1 2 OTTHUMG00000140118.1 +1708 GL000255.2 HAVANA gene 3925013 3925949 356.0 - 0 ENSG00000224197.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000012755.3 +1709 GL000255.2 HAVANA gene 3935606 3941465 1499.0 + 0 ENSG00000225103.3 protein_coding HLA-DQA2 2 OTTHUMG00000012726.1 +1710 GL000255.2 HAVANA gene 3950399 3957838 2030.0 - 0 ENSG00000196610.13 protein_coding HLA-DQB2 2 OTTHUMG00000012752.4 +1711 GL000255.2 HAVANA gene 4016121 4033069 6390.0 - 0 ENSG00000206299.8 protein_coding TAP2 2 OTTHUMG00000012641.3 +1712 GL000255.2 HAVANA gene 4035005 4038991 2006.0 - 0 ENSG00000206298.8 protein_coding PSMB8 2 OTTHUMG00000012779.2 +1713 GL000255.2 HAVANA gene 4038374 4040783 1951.0 + 0 ENSG00000206296.8 processed_transcript PSMB8-AS1 2 OTTHUMG00000140124.1 overlapping_locus +1714 GL000255.2 HAVANA gene 4039497 4048266 4578.0 - 0 ENSG00000206297.7 protein_coding TAP1 2 OTTHUMG00000012640.3 +1715 GL000255.2 HAVANA gene 4038424 4073874 3311.0 + 0 ENSG00000243594.7 protein_coding PSMB9 2 OTTHUMG00000012781.6 overlapping_locus +1716 GL000255.2 HAVANA gene 4073458 4074135 678.0 - 0 ENSG00000226914.1 transcribed_processed_pseudogene PPP1R2P1 2 OTTHUMG00000012754.2 +1717 GL000255.2 HAVANA gene 4090699 4090773 75.0 + 0 ENSG00000233053.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000012600.2 +1718 GL000255.2 HAVANA gene 4128937 4147432 4829.0 - 0 ENSG00000241674.8 protein_coding HLA-DMB 2 OTTHUMG00000012587.4 overlapping_locus +1719 GL000255.2 HAVANA gene 4142920 4165041 2675.0 - 0 ENSG00000242685.7 protein_coding HLA-DMA 2 OTTHUMG00000012584.6 overlapping_locus +1720 GL000255.2 HAVANA gene 4164628 4165142 198.0 + 0 ENSG00000228104.1 processed_transcript AL935042.1 2 OTTHUMG00000149963.1 overlapping_locus +1721 GL000255.2 HAVANA gene 4162985 4175823 6957.0 + 0 ENSG00000215077.10 protein_coding BRD2 2 OTTHUMG00000012697.5 overlapping_locus +1722 GL000255.2 HAVANA gene 4198452 4203886 4012.0 - 0 ENSG00000206292.13 protein_coding HLA-DOA 2 OTTHUMG00000012644.4 +1723 GL000255.2 HAVANA gene 4274089 4274498 410.0 + 0 ENSG00000233194.1 processed_pseudogene RPL32P1 2 OTTHUMG00000012602.2 overlapping_locus +1724 GL000255.2 HAVANA gene 4259201 4275413 5748.0 - 0 ENSG00000206291.10 protein_coding HLA-DPA1 2 OTTHUMG00000012625.5 +1725 GL000255.2 HAVANA gene 4270558 4281835 2791.0 + 0 ENSG00000215048.13 protein_coding HLA-DPB1 2 OTTHUMG00000012659.5 overlapping_locus +1726 GL000255.2 HAVANA gene 4286387 4291929 732.0 - 0 ENSG00000227286.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000012628.3 +1727 GL000255.2 HAVANA gene 4298430 4301966 676.0 - 0 ENSG00000228164.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000012637.2 +1728 GL000255.2 HAVANA gene 4307087 4323435 1601.0 + 0 ENSG00000234834.9 transcribed_unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000012663.3 +1729 GL000255.2 HAVANA gene 4325566 4337701 229.0 - 0 ENSG00000224929.1 unprocessed_pseudogene HLA-DPA3 2 OTTHUMG00000012630.2 +1730 GL000255.2 HAVANA gene 4339166 4342150 717.0 + 0 ENSG00000238100.1 processed_transcript HCG24 2 OTTHUMG00000012578.2 +1731 GL000255.2 HAVANA gene 4357085 4386902 6740.0 - 0 ENSG00000206290.10 protein_coding COL11A2 2 OTTHUMG00000012570.3 +1732 GL000255.2 ENSEMBL gene 4394005 4394100 96.0 + 0 ENSG00000265071.2 misc_RNA RF00019 3 +1733 GL000255.2 HAVANA gene 4387991 4395092 3921.0 - 0 ENSG00000206289.11 protein_coding RXRB 2 OTTHUMG00000012795.9 +1734 GL000255.2 HAVANA gene 4394849 4398843 2845.0 + 0 ENSG00000206288.13 protein_coding SLC39A7 2 OTTHUMG00000012689.5 +1735 GL000255.2 HAVANA gene 4399046 4401239 1171.0 + 0 ENSG00000112474.4 protein_coding HSD17B8 2 OTTHUMG00000012736.2 +1736 GL000255.2 HAVANA gene 4402903 4407130 1818.0 + 0 ENSG00000206287.5 protein_coding RING1 2 OTTHUMG00000012763.2 +1737 GL000255.2 HAVANA gene 4410113 4410736 624.0 + 0 ENSG00000231030.1 processed_pseudogene ZNF70P1 2 OTTHUMG00000012784.2 +1738 GL000255.2 HAVANA gene 4432219 4434121 995.0 + 0 ENSG00000235684.1 processed_pseudogene HTATSF1P1 2 OTTHUMG00000012714.2 +1739 GL000255.2 HAVANA gene 4443934 4449386 1374.0 + 0 ENSG00000231343.5 processed_transcript HCG25 2 OTTHUMG00000012580.4 +1740 GL000255.2 HAVANA gene 4444672 4466464 4503.0 - 0 ENSG00000206286.11 protein_coding VPS52 2 OTTHUMG00000012759.9 +1741 GL000255.2 HAVANA gene 4466427 4470930 1898.0 + 0 ENSG00000096150.9 protein_coding RPS18 2 OTTHUMG00000012621.4 +1742 GL000255.2 HAVANA gene 4471552 4473245 1694.0 + 0 ENSG00000206285.6 protein_coding B3GALT4 2 OTTHUMG00000012713.2 +1743 GL000255.2 HAVANA gene 4473528 4483951 3115.0 - 0 ENSG00000206284.8 protein_coding WDR46 2 OTTHUMG00000012725.8 +1744 GL000255.2 HAVANA gene 4483726 4492822 2953.0 + 0 ENSG00000206283.10 protein_coding PFDN6 2 OTTHUMG00000012977.3 +1745 GL000255.2 HAVANA gene 4486078 4493745 4541.0 - 0 ENSG00000206282.11 protein_coding RGL2 2 OTTHUMG00000013077.6 +1746 GL000255.2 HAVANA gene 4494115 4508814 4999.0 - 0 ENSG00000206281.11 protein_coding TAPBP 2 OTTHUMG00000013076.6 +1747 GL000255.2 HAVANA gene 4508845 4512369 2715.0 - 0 ENSG00000206280.7 protein_coding ZBTB22 2 OTTHUMG00000013687.6 +1748 GL000255.2 HAVANA gene 4512987 4523698 3665.0 - 0 ENSG00000206279.10 protein_coding DAXX 2 OTTHUMG00000013686.7 +1749 GL000255.2 HAVANA gene 4533406 4533923 518.0 + 0 ENSG00000230193.3 processed_pseudogene MYL8P 2 OTTHUMG00000013690.3 +1750 GL000255.2 HAVANA gene 4559970 4560665 696.0 - 0 ENSG00000232376.4 processed_pseudogene LYPLA2P1 2 OTTHUMG00000013688.2 +1751 GL000255.2 HAVANA gene 4583782 4583883 102.0 - 0 ENSG00000227168.1 processed_pseudogene RPL35AP4 2 OTTHUMG00000140155.1 +1752 GL000255.2 HAVANA gene 4594458 4594955 498.0 - 0 ENSG00000228099.3 processed_pseudogene RPL12P1 2 OTTHUMG00000014095.1 +1753 GL000255.2 HAVANA gene 4585944 4604310 3333.0 + 0 ENSG00000204197.9 protein_coding KIFC1 2 OTTHUMG00000013689.4 +1754 GL000255.2 HAVANA gene 4604785 4605630 633.0 + 0 ENSG00000239756.5 processed_transcript PHF1 2 OTTHUMG00000014096.3 +1755 GL000256.2 HAVANA gene 41353 42240 888.0 + 0 ENSG00000248563.1 processed_pseudogene RPSAP2 2 OTTHUMG00000041169.4 +1756 GL000256.2 HAVANA gene 92972 93343 372.0 - 0 ENSG00000248655.1 processed_pseudogene NOP56P1 2 OTTHUMG00000041191.4 +1757 GL000256.2 HAVANA gene 147117 148254 709.0 - 0 ENSG00000233826.1 processed_transcript BX119924.1 2 OTTHUMG00000085910.1 +1758 GL000256.2 HAVANA gene 170664 171295 632.0 + 0 ENSG00000231746.1 processed_pseudogene RPL13P 2 OTTHUMG00000041485.3 +1759 GL000256.2 HAVANA gene 168873 172595 2458.0 - 0 ENSG00000229773.1 processed_transcript LINC01623 2 OTTHUMG00000085913.1 +1760 GL000256.2 HAVANA gene 198243 199317 1075.0 - 0 ENSG00000232997.1 processed_pseudogene ZNF90P2 2 OTTHUMG00000085911.1 +1761 GL000256.2 HAVANA gene 205933 206723 411.0 + 0 ENSG00000237010.1 processed_transcript HCG14 2 OTTHUMG00000085909.1 +1762 GL000256.2 ENSEMBL gene 225038 225137 100.0 + 0 ENSG00000266870.1 snRNA RF00026 3 +1763 GL000256.2 HAVANA gene 212404 233381 7983.0 - 0 ENSG00000229006.7 protein_coding TRIM27 2 OTTHUMG00000085912.2 +1764 GL000256.2 HAVANA gene 253273 253933 466.0 + 0 ENSG00000233566.1 protein_coding LINC01556 2 OTTHUMG00000085946.1 +1765 GL000256.2 HAVANA gene 278515 279845 1331.0 - 0 ENSG00000228990.1 processed_pseudogene KRT18P1 2 OTTHUMG00000085954.1 +1766 GL000256.2 ENSEMBL gene 286926 287224 299.0 + 0 ENSG00000266191.2 misc_RNA RF00017 3 +1767 GL000256.2 HAVANA gene 295659 296940 1032.0 + 0 ENSG00000237898.2 processed_transcript HCG15 2 OTTHUMG00000085942.1 overlapping_locus +1768 GL000256.2 HAVANA gene 296256 297995 317.0 + 0 ENSG00000241124.1 processed_transcript BX248109.1 2 OTTHUMG00000085952.1 overlapping_locus +1769 GL000256.2 HAVANA gene 304250 314674 3174.0 - 0 ENSG00000233831.4 protein_coding ZNF311 2 OTTHUMG00000085955.1 +1770 GL000256.2 HAVANA gene 336039 336966 928.0 - 0 ENSG00000233650.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000085940.1 +1771 GL000256.2 HAVANA gene 353570 354597 1028.0 - 0 ENSG00000227639.1 protein_coding OR2W1 2 OTTHUMG00000085937.3 +1772 GL000256.2 HAVANA gene 381187 381962 776.0 - 0 ENSG00000229100.1 unprocessed_pseudogene OR2P1P 2 OTTHUMG00000085941.1 +1773 GL000256.2 ENSEMBL gene 373358 385887 414.0 + 0 ENSG00000278450.1 protein_coding BX248413.1 3 +1774 GL000256.2 HAVANA gene 385936 386531 596.0 - 0 ENSG00000231592.1 processed_pseudogene SAR1AP1 2 OTTHUMG00000085945.1 +1775 GL000256.2 HAVANA gene 395670 396676 1007.0 - 0 ENSG00000226832.3 protein_coding OR2B3 2 OTTHUMG00000085953.3 +1776 GL000256.2 HAVANA gene 410313 411251 939.0 + 0 ENSG00000235632.1 unprocessed_pseudogene OR2J1 2 OTTHUMG00000085938.1 +1777 GL000256.2 HAVANA gene 421255 422190 936.0 + 0 ENSG00000233618.1 protein_coding OR2J3 2 OTTHUMG00000085957.2 +1778 GL000256.2 HAVANA gene 433573 438270 389.0 + 0 ENSG00000233119.1 processed_transcript BX248093.2 2 OTTHUMG00000085951.1 +1779 GL000256.2 HAVANA gene 447239 448175 937.0 - 0 ENSG00000231670.2 unprocessed_pseudogene BX248093.1 2 OTTHUMG00000085943.1 +1780 GL000256.2 HAVANA gene 482671 483942 1272.0 + 0 ENSG00000226000.4 protein_coding OR2J2 2 OTTHUMG00000085950.3 +1781 GL000256.2 HAVANA gene 490894 491829 936.0 + 0 ENSG00000229069.2 unprocessed_pseudogene OR2J4P 2 OTTHUMG00000085949.1 +1782 GL000256.2 HAVANA gene 524652 525589 938.0 + 0 ENSG00000225592.1 unprocessed_pseudogene BX248084.1 2 OTTHUMG00000085947.1 +1783 GL000256.2 HAVANA gene 538637 539567 931.0 - 0 ENSG00000230874.1 unprocessed_pseudogene OR2G1P 2 OTTHUMG00000085944.1 +1784 GL000256.2 HAVANA gene 572104 573480 879.0 - 0 ENSG00000230752.1 unprocessed_pseudogene OR2U1P 2 OTTHUMG00000085939.1 +1785 GL000256.2 HAVANA gene 533383 576486 464.0 + 0 ENSG00000230089.1 processed_transcript BX248084.2 2 OTTHUMG00000085948.1 +1786 GL000256.2 HAVANA gene 577863 578822 960.0 - 0 ENSG00000226932.1 unprocessed_pseudogene OR2U2P 2 OTTHUMG00000085956.1 +1787 GL000256.2 HAVANA gene 600130 601072 943.0 + 0 ENSG00000232146.2 unprocessed_pseudogene BX005432.1 2 OTTHUMG00000129017.1 +1788 GL000256.2 HAVANA gene 616123 617088 966.0 + 0 ENSG00000234195.4 protein_coding OR14J1 2 OTTHUMG00000129016.2 +1789 GL000256.2 HAVANA gene 639065 640500 1436.0 - 0 ENSG00000227843.1 processed_pseudogene DDX6P1 2 OTTHUMG00000129087.1 +1790 GL000256.2 HAVANA gene 705560 706628 1069.0 + 0 ENSG00000225247.4 protein_coding OR12D2 2 OTTHUMG00000129086.2 +1791 GL000256.2 HAVANA gene 726293 727239 852.0 + 0 ENSG00000250294.1 unprocessed_pseudogene OR12D1 2 OTTHUMG00000129079.1 +1792 GL000256.2 HAVANA gene 664681 740978 1335.0 - 0 ENSG00000227137.8 protein_coding OR5V1 2 OTTHUMG00000129085.2 overlapping_locus +1793 GL000256.2 HAVANA gene 748317 749988 1672.0 + 0 ENSG00000235441.5 protein_coding OR10C1 2 OTTHUMG00000129077.3 +1794 GL000256.2 HAVANA gene 682548 759110 2011.0 - 0 ENSG00000250364.6 protein_coding OR12D3 2 OTTHUMG00000129084.1 overlapping_locus +1795 GL000256.2 HAVANA gene 734515 766084 2864.0 - 0 ENSG00000223898.8 protein_coding OR11A1 2 OTTHUMG00000129081.1 overlapping_locus +1796 GL000256.2 HAVANA gene 766194 773341 3708.0 + 0 ENSG00000229408.8 protein_coding OR2H1 2 OTTHUMG00000129080.2 +1797 GL000256.2 HAVANA gene 773609 778817 381.0 - 0 ENSG00000237369.1 unprocessed_pseudogene UBDP1 2 OTTHUMG00000129076.1 +1798 GL000256.2 HAVANA gene 784036 785082 1047.0 - 0 ENSG00000237544.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000129082.1 +1799 GL000256.2 HAVANA gene 795777 796913 1137.0 - 0 ENSG00000237284.3 protein_coding MAS1L 2 OTTHUMG00000129078.2 +1800 GL000256.2 HAVANA gene 798282 798687 406.0 - 0 ENSG00000231000.3 processed_pseudogene RPS17P1 2 OTTHUMG00000129083.1 +1801 GL000256.2 HAVANA gene 806520 819567 877.0 + 0 ENSG00000225432.1 processed_transcript BX247947.1 2 OTTHUMG00000129094.1 +1802 GL000256.2 HAVANA gene 838436 842584 2777.0 + 0 ENSG00000229383.5 processed_transcript LINC01015 2 OTTHUMG00000129095.2 +1803 GL000256.2 HAVANA gene 846720 847803 1084.0 - 0 ENSG00000234992.1 unprocessed_pseudogene GPR53P 2 OTTHUMG00000129093.1 +1804 GL000256.2 HAVANA gene 945097 945380 284.0 - 0 ENSG00000235666.3 processed_pseudogene SUMO2P1 2 OTTHUMG00000024083.1 +1805 GL000256.2 HAVANA gene 966016 981404 3054.0 + 0 ENSG00000236561.9 protein_coding MOG 2 OTTHUMG00000013852.12 +1806 GL000256.2 HAVANA gene 981424 990140 2149.0 - 0 ENSG00000234669.7 protein_coding ZFP57 2 OTTHUMG00000031613.3 +1807 GL000256.2 HAVANA gene 1017162 1017584 423.0 - 0 ENSG00000229898.1 processed_pseudogene ZDHHC20P1 2 OTTHUMG00000129171.1 +1808 GL000256.2 HAVANA gene 1029240 1030230 991.0 - 0 ENSG00000236881.1 unprocessed_pseudogene BX005428.2 2 OTTHUMG00000130225.1 +1809 GL000256.2 HAVANA gene 1032898 1033368 471.0 - 0 ENSG00000242511.1 transcribed_processed_pseudogene RPL23AP1 2 OTTHUMG00000041179.2 overlapping_locus +1810 GL000256.2 HAVANA gene 1029074 1044770 4300.0 + 0 ENSG00000229698.11 protein_coding HLA-F 2 OTTHUMG00000041181.4 +1811 GL000256.2 HAVANA gene 1054518 1054742 225.0 + 0 ENSG00000226267.1 unprocessed_pseudogene BX005428.1 2 OTTHUMG00000040485.2 +1812 GL000256.2 HAVANA gene 1047970 1055198 1194.0 - 0 ENSG00000249123.1 transcribed_unprocessed_pseudogene MICE 2 OTTHUMG00000041180.2 overlapping_locus +1813 GL000256.2 HAVANA gene 1032830 1055278 4172.0 - 0 ENSG00000230545.6 processed_transcript HLA-F-AS1 2 OTTHUMG00000040513.5 overlapping_locus +1814 GL000256.2 HAVANA gene 1056955 1057375 421.0 - 0 ENSG00000229942.1 processed_pseudogene IFITM4P 2 OTTHUMG00000039687.2 +1815 GL000256.2 HAVANA gene 1097904 1098901 998.0 - 0 ENSG00000228706.4 unprocessed_pseudogene HCG4 2 OTTHUMG00000036141.2 +1816 GL000256.2 HAVANA gene 1097503 1103842 5498.0 + 0 ENSG00000229529.7 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000036943.4 +1817 GL000256.2 HAVANA gene 1106450 1108480 756.0 + 0 ENSG00000260221.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172780.1 +1818 GL000256.2 HAVANA gene 1109230 1110026 797.0 - 0 ENSG00000227326.2 processed_pseudogene RPL7AP7 2 OTTHUMG00000036942.2 +1819 GL000256.2 HAVANA gene 1118600 1118731 132.0 - 0 ENSG00000229499.1 unprocessed_pseudogene MICG 2 OTTHUMG00000037023.2 +1820 GL000256.2 HAVANA gene 1133416 1134396 981.0 - 0 ENSG00000230504.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000131093.1 +1821 GL000256.2 HAVANA gene 1132998 1137170 1836.0 + 0 ENSG00000233095.8 protein_coding HLA-G 2 OTTHUMG00000041489.2 +1822 GL000256.2 HAVANA gene 1157885 1158029 145.0 - 0 ENSG00000236642.1 unprocessed_pseudogene BX247949.1 2 OTTHUMG00000041545.2 +1823 GL000256.2 HAVANA gene 1187130 1188092 963.0 - 0 ENSG00000226736.1 unprocessed_pseudogene BX284699.1 2 OTTHUMG00000131096.1 +1824 GL000256.2 HAVANA gene 1187588 1190304 1082.0 + 0 ENSG00000237218.3 unprocessed_pseudogene HLA-H 2 OTTHUMG00000041550.2 +1825 GL000256.2 HAVANA gene 1196377 1197508 455.0 + 0 ENSG00000224693.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000041549.2 +1826 GL000256.2 HAVANA gene 1206270 1206636 192.0 + 0 ENSG00000229364.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000131097.1 +1827 GL000256.2 HAVANA gene 1207510 1208372 328.0 - 0 ENSG00000223860.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000131094.1 +1828 GL000256.2 HAVANA gene 1225673 1226663 991.0 - 0 ENSG00000236033.3 unprocessed_pseudogene HCG4B 2 OTTHUMG00000042095.2 +1829 GL000256.2 HAVANA gene 1226149 1228926 1037.0 + 0 ENSG00000229959.1 unprocessed_pseudogene HLA-K 2 OTTHUMG00000042094.3 +1830 GL000256.2 HAVANA gene 1232036 1232220 185.0 + 0 ENSG00000236706.1 unprocessed_pseudogene HLA-U 2 OTTHUMG00000044848.2 +1831 GL000256.2 HAVANA gene 1239889 1240880 992.0 - 0 ENSG00000231067.1 unprocessed_pseudogene BX005091.1 2 OTTHUMG00000044847.2 +1832 GL000256.2 HAVANA gene 1254414 1256379 773.0 + 0 ENSG00000234786.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000131095.3 +1833 GL000256.2 HAVANA gene 1268596 1270259 813.0 - 0 ENSG00000235380.1 unprocessed_pseudogene MICD 2 OTTHUMG00000044846.2 +1834 GL000256.2 HAVANA gene 1272918 1276211 655.0 + 0 ENSG00000237812.2 processed_transcript HCG9 2 OTTHUMG00000044845.2 +1835 GL000256.2 HAVANA gene 1291015 1291411 258.0 + 0 ENSG00000235305.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000131178.1 +1836 GL000256.2 HAVANA gene 1292243 1293120 335.0 - 0 ENSG00000229034.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000131174.1 +1837 GL000256.2 HAVANA gene 1303928 1304923 996.0 - 0 ENSG00000231385.1 unprocessed_pseudogene BX005091.2 2 OTTHUMG00000131180.1 overlapping_locus +1838 GL000256.2 HAVANA gene 1304390 1307763 1634.0 + 0 ENSG00000235309.7 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000131179.1 +1839 GL000256.2 HAVANA gene 1239073 1307767 3299.0 + 0 ENSG00000223980.10 protein_coding HLA-A 2 OTTHUMG00000044844.4 +1840 GL000256.2 HAVANA gene 1330609 1331899 984.0 + 0 ENSG00000223996.1 processed_pseudogene ETF1P1 2 OTTHUMG00000131181.1 +1841 GL000256.2 ENSEMBL gene 1334812 1334879 68.0 + 0 ENSG00000275472.1 misc_RNA RF02218 3 +1842 GL000256.2 ENSEMBL gene 1357037 1357112 76.0 + 0 ENSG00000274187.1 misc_RNA RF02219 3 +1843 GL000256.2 ENSEMBL gene 1360002 1360105 104.0 + 0 ENSG00000276383.1 misc_RNA RF02220 3 +1844 GL000256.2 HAVANA gene 1298817 1360562 19548.0 - 0 ENSG00000196299.10 processed_transcript ZNRD1ASP 2 OTTHUMG00000131177.2 overlapping_locus +1845 GL000256.2 HAVANA gene 1357821 1363828 3672.0 + 0 ENSG00000233795.6 protein_coding ZNRD1 2 OTTHUMG00000065676.3 ncRNA_host +1846 GL000256.2 HAVANA gene 1365628 1369252 2421.0 + 0 ENSG00000237829.6 protein_coding PPP1R11 2 OTTHUMG00000131175.3 +1847 GL000256.2 HAVANA gene 1369185 1374806 2206.0 - 0 ENSG00000230467.8 protein_coding RNF39 2 OTTHUMG00000131176.1 +1848 GL000256.2 HAVANA gene 1401829 1412029 3535.0 - 0 ENSG00000224168.9 protein_coding TRIM31 2 OTTHUMG00000131237.2 +1849 GL000256.2 HAVANA gene 1404169 1413646 548.0 + 0 ENSG00000225732.1 processed_transcript TRIM31-AS1 2 OTTHUMG00000131239.1 +1850 GL000256.2 ENSEMBL gene 1431744 1431906 163.0 - 0 ENSG00000263942.1 snoRNA RF00554 3 +1851 GL000256.2 HAVANA gene 1435047 1447667 2497.0 + 0 ENSG00000233931.7 protein_coding TRIM40 2 OTTHUMG00000131241.1 +1852 GL000256.2 HAVANA gene 1450870 1459861 3549.0 - 0 ENSG00000229346.8 protein_coding TRIM10 2 OTTHUMG00000131242.1 +1853 GL000256.2 HAVANA gene 1462137 1471627 2515.0 + 0 ENSG00000224145.8 protein_coding TRIM15 2 OTTHUMG00000131243.3 +1854 GL000256.2 HAVANA gene 1485687 1487496 1203.0 - 0 ENSG00000224954.1 processed_pseudogene PAIP1P1 2 OTTHUMG00000131238.1 overlapping_locus +1855 GL000256.2 HAVANA gene 1483342 1512318 4378.0 - 0 ENSG00000234046.7 protein_coding TRIM26 2 OTTHUMG00000131240.4 overlapping_locus +1856 GL000256.2 HAVANA gene 1537185 1540747 753.0 + 0 ENSG00000233350.1 unprocessed_pseudogene TRIM26BP 2 OTTHUMG00000132987.1 +1857 GL000256.2 HAVANA gene 1558077 1565431 4768.0 + 0 ENSG00000242227.6 transcribed_unprocessed_pseudogene HLA-L 2 OTTHUMG00000132977.1 +1858 GL000256.2 HAVANA gene 1532923 1624588 759.0 - 0 ENSG00000240833.5 processed_transcript HCG17 2 OTTHUMG00000132984.1 overlapping_locus +1859 GL000256.2 HAVANA gene 1589264 1625604 5633.0 - 0 ENSG00000224619.6 processed_transcript HCG18 2 OTTHUMG00000132986.2 overlapping_locus +1860 GL000256.2 HAVANA gene 1624933 1642186 4226.0 + 0 ENSG00000229929.10 protein_coding TRIM39 2 OTTHUMG00000132978.3 +1861 GL000256.2 HAVANA gene 1627766 1645341 2717.0 + 0 ENSG00000239927.6 protein_coding RPP21 2 OTTHUMG00000132976.2 +1862 GL000256.2 HAVANA gene 1649873 1650007 135.0 + 0 ENSG00000234799.1 unprocessed_pseudogene HLA-N 2 OTTHUMG00000132980.1 +1863 GL000256.2 HAVANA gene 1657735 1658368 634.0 - 0 ENSG00000235877.1 processed_pseudogene BX294158.1 2 OTTHUMG00000132982.1 +1864 GL000256.2 HAVANA gene 1661557 1662725 1169.0 - 0 ENSG00000230441.1 processed_pseudogene UBQLN1P1 2 OTTHUMG00000132979.1 +1865 GL000256.2 HAVANA gene 1713161 1717766 1055.0 + 0 ENSG00000231785.1 unprocessed_pseudogene MICC 2 OTTHUMG00000132981.1 +1866 GL000256.2 HAVANA gene 1764892 1766429 1267.0 + 0 ENSG00000230422.1 processed_pseudogene TMPOP1 2 OTTHUMG00000132988.1 +1867 GL000256.2 HAVANA gene 1767239 1768608 1370.0 + 0 ENSG00000237865.3 processed_pseudogene SUCLA2P1 2 OTTHUMG00000132985.1 +1868 GL000256.2 HAVANA gene 1786712 1787362 651.0 + 0 ENSG00000137321.7 processed_pseudogene RANP1 2 OTTHUMG00000132975.1 +1869 GL000256.2 HAVANA gene 1790236 1794974 2975.0 + 0 ENSG00000230254.7 protein_coding HLA-E 2 OTTHUMG00000132983.2 +1870 GL000256.2 HAVANA gene 1817023 1819977 851.0 + 0 ENSG00000232523.1 processed_transcript LINC02569 2 OTTHUMG00000133032.1 +1871 GL000256.2 HAVANA gene 1842133 1857929 8646.0 - 0 ENSG00000226882.9 protein_coding GNL1 2 OTTHUMG00000133027.3 +1872 GL000256.2 HAVANA gene 1857641 1864478 4281.0 + 0 ENSG00000229202.10 protein_coding PRR3 2 OTTHUMG00000133026.2 +1873 GL000256.2 HAVANA gene 1872133 1897937 4339.0 + 0 ENSG00000225989.9 protein_coding ABCF1 2 OTTHUMG00000133029.2 +1874 GL000256.2 HAVANA gene 1901158 1919370 5215.0 - 0 ENSG00000238104.7 protein_coding PPP1R10 2 OTTHUMG00000149989.2 +1875 GL000256.2 HAVANA gene 1918467 1927153 1888.0 + 0 ENSG00000223775.8 protein_coding MRPS18B 2 OTTHUMG00000133030.2 +1876 GL000256.2 HAVANA gene 1934391 1934657 267.0 + 0 ENSG00000224889.4 processed_pseudogene PTMAP1 2 OTTHUMG00000133031.1 overlapping_locus +1877 GL000256.2 HAVANA gene 1927600 1947582 4035.0 + 0 ENSG00000234549.8 protein_coding ATAT1 2 OTTHUMG00000133024.2 overlapping_locus +1878 GL000256.2 HAVANA gene 1947798 1953860 1863.0 + 0 ENSG00000237100.9 protein_coding C6orf136 2 OTTHUMG00000133025.2 +1879 GL000256.2 HAVANA gene 1953870 1973820 4009.0 - 0 ENSG00000226171.6 protein_coding DHX16 2 OTTHUMG00000133722.3 +1880 GL000256.2 HAVANA gene 1977172 1980172 1111.0 - 0 ENSG00000236428.10 protein_coding PPP1R18 2 OTTHUMG00000149990.1 +1881 GL000256.2 HAVANA gene 2003853 2013969 738.0 + 0 ENSG00000236522.1 processed_transcript MDC1-AS1 2 OTTHUMG00000133721.1 +1882 GL000256.2 HAVANA gene 2000593 2018675 8064.0 - 0 ENSG00000231135.9 protein_coding MDC1 2 OTTHUMG00000133719.3 +1883 GL000256.2 HAVANA gene 2020987 2026212 3359.0 + 0 ENSG00000232421.10 protein_coding TUBB 2 OTTHUMG00000133718.2 +1884 GL000256.2 ENSEMBL gene 2037091 2037201 111.0 - 0 ENSG00000263610.1 misc_RNA RF00019 3 +1885 GL000256.2 HAVANA gene 2028495 2043529 3187.0 - 0 ENSG00000230143.9 protein_coding FLOT1 2 OTTHUMG00000133717.3 ncRNA_host +1886 GL000256.2 HAVANA gene 2043995 2045350 1356.0 - 0 ENSG00000235030.3 protein_coding IER3 2 OTTHUMG00000133723.1 +1887 GL000256.2 ENSEMBL gene 2051806 2052057 252.0 + 0 ENSG00000263912.2 misc_RNA RF00017 3 +1888 GL000256.2 HAVANA gene 2089443 2093011 1075.0 + 0 ENSG00000238216.5 processed_transcript HCG20 2 OTTHUMG00000133716.1 +1889 GL000256.2 HAVANA gene 2099402 2131367 1214.0 - 0 ENSG00000237890.5 processed_transcript BX571801.1 2 OTTHUMG00000133720.1 +1890 GL000256.2 HAVANA gene 2311184 2336137 6019.0 + 0 ENSG00000229126.5 processed_transcript BX248321.1 2 OTTHUMG00000133724.1 +1891 GL000256.2 HAVANA gene 2356910 2363339 2180.0 + 0 ENSG00000237093.6 transcribed_unprocessed_pseudogene HCG22 2 OTTHUMG00000041141.2 +1892 GL000256.2 ENSEMBL gene 2386500 2386599 100.0 + 0 ENSG00000266626.1 snRNA RF00026 3 +1893 GL000256.2 HAVANA gene 2461957 2467631 3291.0 + 0 ENSG00000234674.6 protein_coding TCF19 2 OTTHUMG00000036125.5 +1894 GL000256.2 HAVANA gene 2467753 2474125 1895.0 - 0 ENSG00000237582.10 protein_coding POU5F1 2 OTTHUMG00000036282.3 +1895 GL000256.2 HAVANA gene 2477166 2481332 593.0 - 0 ENSG00000224056.1 processed_transcript PSORS1C3 2 OTTHUMG00000036283.2 +1896 GL000256.2 HAVANA gene 2503589 2505340 516.0 - 0 ENSG00000229075.1 processed_transcript BX088580.1 2 OTTHUMG00000133725.1 +1897 GL000256.2 HAVANA gene 2501184 2507388 1804.0 + 0 ENSG00000231281.1 processed_transcript HCG27 2 OTTHUMG00000036281.3 +1898 GL000256.2 HAVANA gene 2570707 2574099 2590.0 - 0 ENSG00000206435.10 protein_coding HLA-C 2 OTTHUMG00000037240.5 +1899 GL000256.2 HAVANA gene 2577491 2580663 3173.0 + 0 ENSG00000225029.3 processed_pseudogene USP8P1 2 OTTHUMG00000037239.2 +1900 GL000256.2 HAVANA gene 2582226 2583425 1200.0 + 0 ENSG00000227672.1 processed_pseudogene RPL3P2 2 OTTHUMG00000037241.1 +1901 GL000256.2 HAVANA gene 2589702 2591153 1452.0 - 0 ENSG00000225403.1 processed_pseudogene WASF5P 2 OTTHUMG00000036663.2 +1902 GL000256.2 HAVANA gene 2610039 2610773 306.0 - 0 ENSG00000226834.1 unprocessed_pseudogene BX248310.1 2 OTTHUMG00000134275.1 +1903 GL000256.2 HAVANA gene 2571447 2659467 2704.0 - 0 ENSG00000228964.10 protein_coding HLA-B 2 OTTHUMG00000036662.5 +1904 GL000256.2 HAVANA gene 2668587 2669133 547.0 - 0 ENSG00000233161.1 processed_pseudogene DHFRP2 2 OTTHUMG00000037243.1 +1905 GL000256.2 ENSEMBL gene 2672351 2672457 107.0 + 0 ENSG00000266784.1 snRNA RF00026 3 +1906 GL000256.2 HAVANA gene 2679637 2680239 603.0 + 0 ENSG00000232244.1 processed_pseudogene BX248310.2 2 OTTHUMG00000037242.2 +1907 GL000256.2 HAVANA gene 2682659 2683085 427.0 + 0 ENSG00000227405.1 processed_pseudogene ZDHHC20P2 2 OTTHUMG00000134273.1 +1908 GL000256.2 HAVANA gene 2684337 2684554 56.0 - 0 ENSG00000226027.1 unprocessed_pseudogene HLA-S 2 OTTHUMG00000037253.4 +1909 GL000256.2 ENSEMBL gene 2704428 2704526 99.0 - 0 ENSG00000266250.1 misc_RNA RF00019 3 +1910 GL000256.2 HAVANA gene 2702061 2718516 3853.0 + 0 ENSG00000231225.9 protein_coding MICA 2 OTTHUMG00000036959.3 +1911 GL000256.2 HAVANA gene 2743886 2749189 2143.0 + 0 ENSG00000226768.1 processed_transcript LINC01149 2 OTTHUMG00000134272.1 +1912 GL000256.2 HAVANA gene 2762424 2765058 2544.0 + 0 ENSG00000230389.3 processed_transcript HCP5 2 OTTHUMG00000037036.3 +1913 GL000256.2 ENSEMBL gene 2795984 2796085 102.0 - 0 ENSG00000265509.1 misc_RNA RF00019 3 +1914 GL000256.2 HAVANA gene 2797381 2810410 2687.0 + 0 ENSG00000227772.8 protein_coding MICB 2 OTTHUMG00000037037.4 +1915 GL000256.2 HAVANA gene 2818763 2819574 498.0 - 0 ENSG00000235596.3 processed_pseudogene PPIAP9 2 OTTHUMG00000037461.2 +1916 GL000256.2 HAVANA gene 2827398 2827977 580.0 + 0 ENSG00000231623.2 processed_pseudogene RPL15P4 2 OTTHUMG00000037460.1 +1917 GL000256.2 HAVANA gene 2828001 2829516 955.0 + 0 ENSG00000226841.2 protein_coding MCCD1 2 OTTHUMG00000134336.1 +1918 GL000256.2 ENSEMBL gene 2835658 2835733 76.0 - 0 ENSG00000263358.1 snoRNA SNORD117 3 +1919 GL000256.2 ENSEMBL gene 2840385 2840462 78.0 - 0 ENSG00000263442.1 snoRNA SNORD84 3 +1920 GL000256.2 HAVANA gene 2829503 2841732 7007.0 - 0 ENSG00000235439.10 protein_coding DDX39B 2 OTTHUMG00000166665.2 ncRNA_host,overlapping_locus +1921 GL000256.2 HAVANA gene 2841588 2842422 527.0 + 0 ENSG00000228245.1 processed_transcript DDX39B-AS1 2 OTTHUMG00000137359.1 +1922 GL000256.2 HAVANA gene 2829503 2845866 2039.0 - 0 ENSG00000254899.1 protein_coding ATP6V1G2-DDX39B 2 OTTHUMG00000037459.9 ncRNA_host,overlapping_locus +1923 GL000256.2 HAVANA gene 2843746 2846132 1652.0 - 0 ENSG00000234920.3 protein_coding ATP6V1G2 2 OTTHUMG00000037951.3 overlapping_locus +1924 GL000256.2 HAVANA gene 2846154 2858110 1779.0 + 0 ENSG00000236346.8 protein_coding NFKBIL1 2 OTTHUMG00000037950.6 +1925 GL000256.2 HAVANA gene 2871334 2873604 1737.0 + 0 ENSG00000230279.8 protein_coding LTA 2 OTTHUMG00000039633.2 +1926 GL000256.2 HAVANA gene 2874847 2877616 1676.0 + 0 ENSG00000230108.3 protein_coding TNF 2 OTTHUMG00000039703.4 +1927 GL000256.2 HAVANA gene 2879835 2881802 926.0 - 0 ENSG00000238114.7 protein_coding LTB 2 OTTHUMG00000040405.3 +1928 GL000256.2 HAVANA gene 2885405 2888190 2294.0 + 0 ENSG00000230791.8 protein_coding LST1 2 OTTHUMG00000040404.6 +1929 GL000256.2 HAVANA gene 2888176 2892265 1211.0 - 0 ENSG00000223833.6 protein_coding NCR3 2 OTTHUMG00000041468.3 +1930 GL000256.2 HAVANA gene 2910370 2910643 274.0 - 0 ENSG00000228926.1 processed_pseudogene UQCRHP1 2 OTTHUMG00000041469.1 +1931 GL000256.2 HAVANA gene 2914470 2916307 1320.0 + 0 ENSG00000235588.8 protein_coding AIF1 2 OTTHUMG00000065680.2 +1932 GL000256.2 ENSEMBL gene 2922358 2922489 132.0 + 0 ENSG00000263994.1 snoRNA SNORA38 3 +1933 GL000256.2 HAVANA gene 2920002 2937052 9115.0 + 0 ENSG00000231825.9 protein_coding PRRC2A 2 OTTHUMG00000065679.3 ncRNA_host +1934 GL000256.2 HAVANA gene 2938304 2951983 5340.0 - 0 ENSG00000233348.10 protein_coding BAG6 2 OTTHUMG00000137392.3 +1935 GL000256.2 HAVANA gene 2951694 2957487 1237.0 + 0 ENSG00000235754.7 protein_coding APOM 2 OTTHUMG00000137394.2 +1936 GL000256.2 HAVANA gene 2957606 2959996 671.0 + 0 ENSG00000227853.1 processed_transcript C6orf47-AS1 2 OTTHUMG00000137395.1 +1937 GL000256.2 HAVANA gene 2957575 2960049 2475.0 - 0 ENSG00000226103.2 protein_coding C6orf47 2 OTTHUMG00000137393.1 +1938 GL000256.2 ENSEMBL gene 2962572 2962685 114.0 + 0 ENSG00000266716.1 misc_RNA RF00019 3 +1939 GL000256.2 HAVANA gene 2960506 2965567 3533.0 - 0 ENSG00000228605.6 protein_coding GPANK1 2 OTTHUMG00000137396.4 +1940 GL000256.2 HAVANA gene 2968402 2972830 2644.0 + 0 ENSG00000239497.7 protein_coding LY6G5B 2 OTTHUMG00000137415.1 overlapping_locus +1941 GL000256.2 HAVANA gene 2964520 2972830 4276.0 + 0 ENSG00000224774.7 protein_coding CSNK2B 2 OTTHUMG00000137414.2 overlapping_locus +1942 GL000256.2 HAVANA gene 2975968 2983321 2828.0 - 0 ENSG00000111971.14 protein_coding LY6G5C 2 OTTHUMG00000137410.2 +1943 GL000256.2 HAVANA gene 2986234 3002713 3854.0 - 0 ENSG00000230475.9 protein_coding ABHD16A 2 OTTHUMG00000137411.3 +1944 GL000256.2 HAVANA gene 3006177 3009889 920.0 + 0 ENSG00000241822.3 protein_coding LY6G6F 2 OTTHUMG00000137413.1 overlapping_locus +1945 GL000256.2 HAVANA gene 3011632 3013108 506.0 - 0 ENSG00000226187.8 protein_coding LY6G6E 2 OTTHUMG00000137404.3 +1946 GL000256.2 HAVANA gene 3014652 3017100 614.0 + 0 ENSG00000235302.9 protein_coding LY6G6D 2 OTTHUMG00000137409.3 overlapping_locus +1947 GL000256.2 HAVANA gene 3006196 3017214 1266.0 + 0 ENSG00000258880.1 protein_coding BX248244.1 2 OTTHUMG00000171227.1 overlapping_locus +1948 GL000256.2 HAVANA gene 3017944 3021141 1103.0 - 0 ENSG00000235925.3 protein_coding LY6G6C 2 OTTHUMG00000137408.2 +1949 GL000256.2 HAVANA gene 3017890 3026006 2860.0 + 0 ENSG00000231003.6 protein_coding MPIG6B 2 OTTHUMG00000137407.3 +1950 GL000256.2 HAVANA gene 3026334 3029913 2538.0 - 0 ENSG00000228128.6 protein_coding DDAH2 2 OTTHUMG00000137402.3 overlapping_locus +1951 GL000256.2 HAVANA gene 3029877 3039060 1942.0 - 0 ENSG00000223639.6 protein_coding CLIC1 2 OTTHUMG00000137403.2 overlapping_locus +1952 GL000256.2 ENSEMBL gene 3056243 3056345 103.0 - 0 ENSG00000263638.1 snRNA RF00026 3 +1953 GL000256.2 HAVANA gene 3039288 3064137 4602.0 + 0 ENSG00000237333.12 protein_coding MSH5 2 OTTHUMG00000167694.3 fragmented_locus,overlapping_locus +1954 GL000256.2 HAVANA gene 3062091 3064143 1557.0 + 0 ENSG00000237918.9 protein_coding SAPCD1 2 OTTHUMG00000137405.1 overlapping_locus +1955 GL000256.2 HAVANA gene 3057457 3064143 3019.0 + 0 ENSG00000255419.6 protein_coding MSH5-SAPCD1 2 OTTHUMG00000137412.5 overlapping_locus +1956 GL000256.2 HAVANA gene 3064882 3076585 3638.0 - 0 ENSG00000234433.8 protein_coding VWA7 2 OTTHUMG00000137400.2 +1957 GL000256.2 ENSEMBL gene 3078108 3078196 89.0 - 0 ENSG00000264778.1 misc_RNA RF00019 3 +1958 GL000256.2 HAVANA gene 3076809 3094270 4723.0 - 0 ENSG00000231945.8 protein_coding VARS 2 OTTHUMG00000137401.4 ncRNA_host +1959 GL000256.2 HAVANA gene 3158886 3164159 4848.0 - 0 ENSG00000234846.7 protein_coding NEU1 2 OTTHUMG00000137484.3 +1960 GL000256.2 HAVANA gene 3164419 3180268 3369.0 - 0 ENSG00000232180.8 protein_coding SLC44A4 2 OTTHUMG00000137491.2 +1961 GL000256.2 HAVANA gene 3184983 3185276 223.0 + 0 ENSG00000224766.1 processed_transcript BX005460.1 2 OTTHUMG00000137488.1 +1962 GL000256.2 HAVANA gene 3180981 3190824 4743.0 - 0 ENSG00000224143.10 protein_coding EHMT2 2 OTTHUMG00000137489.3 +1963 GL000256.2 HAVANA gene 3235638 3242912 787.0 - 0 ENSG00000225773.1 processed_transcript C4B-AS1 2 OTTHUMG00000137482.1 +1964 GL000256.2 HAVANA gene 3221179 3246863 5242.0 + 0 ENSG00000235696.8 protein_coding C2 2 OTTHUMG00000137486.3 overlapping_locus +1965 GL000256.2 HAVANA gene 3246839 3253273 4538.0 + 0 ENSG00000242335.8 protein_coding CFB 2 OTTHUMG00000137485.2 overlapping_locus +1966 GL000256.2 HAVANA gene 3253276 3260281 2701.0 - 0 ENSG00000233801.9 protein_coding NELFE 2 OTTHUMG00000137481.3 +1967 GL000256.2 HAVANA gene 3260269 3270940 5561.0 + 0 ENSG00000228896.9 protein_coding SKIV2L 2 OTTHUMG00000137487.2 +1968 GL000256.2 HAVANA gene 3270999 3273481 2483.0 - 0 ENSG00000234798.6 protein_coding DXO 2 OTTHUMG00000137483.2 +1969 GL000256.2 HAVANA gene 3272364 3282635 3546.0 + 0 ENSG00000236250.8 protein_coding STK19 2 OTTHUMG00000137490.2 +1970 GL000256.2 HAVANA gene 3283213 3303870 6923.0 + 0 ENSG00000233312.8 protein_coding C4B_2 2 OTTHUMG00000188967.1 +1971 GL000256.2 HAVANA gene 3301165 3304710 2095.0 - 0 ENSG00000232577.1 processed_transcript BX679671.1 2 OTTHUMG00000137660.1 +1972 GL000256.2 HAVANA gene 3306825 3309639 1970.0 + 0 ENSG00000239882.7 transcribed_unprocessed_pseudogene CYP21A1P 2 OTTHUMG00000137661.1 +1973 GL000256.2 HAVANA gene 3309803 3313661 2038.0 - 0 ENSG00000234328.2 unprocessed_pseudogene TNXA 2 OTTHUMG00000137665.1 +1974 GL000256.2 HAVANA gene 3314460 3314976 210.0 + 0 ENSG00000248989.1 unprocessed_pseudogene STK19B 2 OTTHUMG00000137659.1 +1975 GL000256.2 HAVANA gene 3315951 3336608 6919.0 + 0 ENSG00000228454.7 protein_coding C4B 2 OTTHUMG00000137669.2 +1976 GL000256.2 HAVANA gene 3333919 3337448 2079.0 - 0 ENSG00000238170.1 processed_transcript C4A-AS1 2 OTTHUMG00000137666.1 +1977 GL000256.2 HAVANA gene 3339488 3342857 2634.0 + 0 ENSG00000198457.13 protein_coding CYP21A2 2 OTTHUMG00000137664.2 +1978 GL000256.2 HAVANA gene 3342342 3369188 7715.0 - 0 ENSG00000236236.9 protein_coding TNXB 2 OTTHUMG00000137670.2 +1979 GL000256.2 HAVANA gene 3464563 3470577 4261.0 - 0 ENSG00000235956.9 protein_coding PRRT1 2 OTTHUMG00000137676.3 +1980 GL000256.2 HAVANA gene 3480789 3484488 2622.0 + 0 ENSG00000239974.6 protein_coding EGFL8 2 OTTHUMG00000137671.5 overlapping_locus +1981 GL000256.2 HAVANA gene 3469104 3488185 7532.0 + 0 ENSG00000227600.11 protein_coding PPT2 2 OTTHUMG00000137672.8 overlapping_locus +1982 GL000256.2 HAVANA gene 3484419 3494303 3631.0 - 0 ENSG00000228892.9 protein_coding AGPAT1 2 OTTHUMG00000137675.2 +1983 GL000256.2 HAVANA gene 3494561 3497000 1178.0 + 0 ENSG00000227277.9 protein_coding RNF5 2 OTTHUMG00000137673.2 +1984 GL000256.2 HAVANA gene 3497175 3500531 2077.0 - 0 ENSG00000237405.10 protein_coding AGER 2 OTTHUMG00000137662.3 +1985 GL000256.2 HAVANA gene 3500940 3506391 4350.0 - 0 ENSG00000224952.7 protein_coding PBX2 2 OTTHUMG00000137674.2 +1986 GL000256.2 HAVANA gene 3506971 3511728 1854.0 - 0 ENSG00000234508.7 protein_coding GPSM3 2 OTTHUMG00000137663.3 overlapping_locus +1987 GL000256.2 HAVANA gene 3511048 3540275 9747.0 - 0 ENSG00000234876.5 protein_coding NOTCH4 2 OTTHUMG00000137667.2 overlapping_locus +1988 GL000256.2 HAVANA gene 3641489 3642448 960.0 + 0 ENSG00000237295.1 processed_pseudogene HNRNPA1P2 2 OTTHUMG00000138991.1 +1989 GL000256.2 ENSEMBL gene 3668802 3668908 107.0 + 0 ENSG00000265048.1 snRNA RF00026 3 +1990 GL000256.2 HAVANA gene 3608972 3687861 2317.0 - 0 ENSG00000232106.9 protein_coding C6orf10 2 OTTHUMG00000138995.1 +1991 GL000256.2 HAVANA gene 3706431 3709608 611.0 + 0 ENSG00000224507.1 processed_transcript HCG23 2 OTTHUMG00000138994.1 +1992 GL000256.2 HAVANA gene 3709881 3723057 1474.0 - 0 ENSG00000224242.7 protein_coding BTNL2 2 OTTHUMG00000033100.6 +1993 GL000256.2 HAVANA gene 3754985 3760195 1280.0 + 0 ENSG00000234794.9 protein_coding HLA-DRA 2 OTTHUMG00000138993.2 +1994 GL000256.2 HAVANA gene 3775104 3788759 343.0 - 0 ENSG00000232705.2 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000138992.1 +1995 GL000256.2 HAVANA gene 3800997 3801092 96.0 - 0 ENSG00000235228.2 unprocessed_pseudogene BX120007.2 2 OTTHUMG00000149901.1 +1996 GL000256.2 ENSEMBL gene 3826562 3826709 148.0 - 0 ENSG00000264704.1 snRNA RF00003 3 +1997 GL000256.2 HAVANA gene 3831989 3832084 96.0 - 0 ENSG00000226227.1 unprocessed_pseudogene BX120007.1 2 OTTHUMG00000149900.1 +1998 GL000256.2 ENSEMBL gene 3848355 3848506 152.0 - 0 ENSG00000265838.1 snRNA RF00003 3 +1999 GL000256.2 HAVANA gene 3851133 3866096 1184.0 - 0 ENSG00000227357.2 protein_coding HLA-DRB4 2 OTTHUMG00000138996.1 +2000 GL000256.2 ENSEMBL gene 3887783 3887930 148.0 - 0 ENSG00000264960.1 snRNA RF00003 3 +2001 GL000256.2 HAVANA gene 3897750 3900287 432.0 - 0 ENSG00000233697.2 unprocessed_pseudogene HLA-DRB8 2 OTTHUMG00000138997.3 +2002 GL000256.2 ENSEMBL gene 3928346 3928509 164.0 - 0 ENSG00000265248.1 snRNA RF00003 3 +2003 GL000256.2 HAVANA gene 3930464 3931403 940.0 + 0 ENSG00000235324.4 processed_pseudogene BX649210.2 2 OTTHUMG00000139004.1 +2004 GL000256.2 HAVANA gene 3932910 3933317 408.0 - 0 ENSG00000235116.1 processed_pseudogene BX649210.1 2 OTTHUMG00000139005.1 +2005 GL000256.2 HAVANA gene 3938472 3939603 1132.0 + 0 ENSG00000238101.1 processed_pseudogene FAM8A5P 2 OTTHUMG00000139003.1 +2006 GL000256.2 HAVANA gene 3935637 3954816 785.0 - 0 ENSG00000227099.1 unprocessed_pseudogene HLA-DRB7 2 OTTHUMG00000139002.1 +2007 GL000256.2 ENSEMBL gene 3976599 3976747 149.0 - 0 ENSG00000266860.1 snRNA RF00003 3 +2008 GL000256.2 HAVANA gene 3979128 4012352 1390.0 - 0 ENSG00000228080.10 protein_coding HLA-DRB1 2 OTTHUMG00000139006.3 +2009 GL000256.2 HAVANA gene 4039288 4045152 1217.0 + 0 ENSG00000232062.9 protein_coding HLA-DQA1 2 OTTHUMG00000140111.1 +2010 GL000256.2 HAVANA gene 4057111 4057960 551.0 + 0 ENSG00000230414.1 processed_transcript HLA-DQB1-AS1 2 OTTHUMG00000140109.1 +2011 GL000256.2 HAVANA gene 4057117 4059706 310.0 - 0 ENSG00000243245.1 processed_transcript BX248406.2 2 OTTHUMG00000140110.1 overlapping_locus +2012 GL000256.2 HAVANA gene 4056698 4063945 1643.0 - 0 ENSG00000231939.5 protein_coding HLA-DQB1 2 OTTHUMG00000140112.1 overlapping_locus +2013 GL000256.2 HAVANA gene 4106754 4107585 832.0 - 0 ENSG00000233317.1 unprocessed_pseudogene MTCO3P1 2 OTTHUMG00000140113.1 +2014 GL000256.2 HAVANA gene 4118148 4118978 445.0 + 0 ENSG00000232343.1 processed_transcript BX248406.1 2 OTTHUMG00000140117.1 +2015 GL000256.2 HAVANA gene 4130905 4131842 356.0 - 0 ENSG00000234968.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000140115.1 +2016 GL000256.2 HAVANA gene 4141489 4147359 1521.0 + 0 ENSG00000231526.3 protein_coding HLA-DQA2 2 OTTHUMG00000140116.1 +2017 GL000256.2 HAVANA gene 4156243 4163679 2028.0 - 0 ENSG00000226165.9 protein_coding HLA-DQB2 2 OTTHUMG00000140120.1 +2018 GL000256.2 HAVANA gene 4212175 4216460 1858.0 - 0 ENSG00000239457.6 protein_coding HLA-DOB 2 OTTHUMG00000140121.5 +2019 GL000256.2 HAVANA gene 4221235 4238030 6218.0 - 0 ENSG00000232326.9 protein_coding TAP2 2 OTTHUMG00000041555.6 +2020 GL000256.2 HAVANA gene 4239969 4243903 1954.0 - 0 ENSG00000231631.6 protein_coding PSMB8 2 OTTHUMG00000140127.2 +2021 GL000256.2 HAVANA gene 4243338 4245747 1951.0 + 0 ENSG00000233140.6 processed_transcript PSMB8-AS1 2 OTTHUMG00000140126.1 overlapping_locus +2022 GL000256.2 HAVANA gene 4244461 4253230 4576.0 - 0 ENSG00000224748.4 protein_coding TAP1 2 OTTHUMG00000140128.2 +2023 GL000256.2 HAVANA gene 4243388 4278806 3309.0 + 0 ENSG00000243958.7 protein_coding PSMB9 2 OTTHUMG00000140189.4 overlapping_locus +2024 GL000256.2 HAVANA gene 4278391 4279067 677.0 - 0 ENSG00000223939.8 transcribed_processed_pseudogene PPP1R2P1 2 OTTHUMG00000140188.1 +2025 GL000256.2 HAVANA gene 4295623 4295697 75.0 + 0 ENSG00000228498.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000140190.1 +2026 GL000256.2 HAVANA gene 4333862 4352360 4829.0 - 0 ENSG00000241296.8 protein_coding HLA-DMB 2 OTTHUMG00000140192.3 overlapping_locus +2027 GL000256.2 HAVANA gene 4347848 4369963 2675.0 - 0 ENSG00000243215.7 protein_coding HLA-DMA 2 OTTHUMG00000140191.3 overlapping_locus +2028 GL000256.2 HAVANA gene 4369550 4370064 198.0 + 0 ENSG00000225788.1 processed_transcript BX664702.1 2 OTTHUMG00000150001.1 overlapping_locus +2029 GL000256.2 HAVANA gene 4367907 4430762 6868.0 + 0 ENSG00000235307.9 protein_coding BRD2 2 OTTHUMG00000140236.5 overlapping_locus +2030 GL000256.2 HAVANA gene 4453373 4458806 4011.0 - 0 ENSG00000232957.11 protein_coding HLA-DOA 2 OTTHUMG00000140242.3 +2031 GL000256.2 HAVANA gene 4528434 4528843 410.0 + 0 ENSG00000224098.1 processed_pseudogene RPL32P1 2 OTTHUMG00000140235.1 overlapping_locus +2032 GL000256.2 HAVANA gene 4513552 4529758 5748.0 - 0 ENSG00000236177.9 protein_coding HLA-DPA1 2 OTTHUMG00000140241.4 +2033 GL000256.2 HAVANA gene 4524909 4536184 2791.0 + 0 ENSG00000226826.10 protein_coding HLA-DPB1 2 OTTHUMG00000140240.3 overlapping_locus +2034 GL000256.2 HAVANA gene 4540736 4546278 738.0 - 0 ENSG00000236898.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000140237.1 +2035 GL000256.2 HAVANA gene 4552751 4556287 676.0 - 0 ENSG00000226513.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000140238.1 +2036 GL000256.2 HAVANA gene 4561408 4577728 1603.0 + 0 ENSG00000168379.8 transcribed_unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000140243.1 +2037 GL000256.2 HAVANA gene 4579860 4579986 127.0 - 0 ENSG00000223447.1 unprocessed_pseudogene HLA-DPA3 2 OTTHUMG00000140239.1 +2038 GL000256.2 HAVANA gene 4611327 4638113 6399.0 - 0 ENSG00000232541.10 protein_coding COL11A2 2 OTTHUMG00000140122.2 +2039 GL000256.2 HAVANA gene 4664351 4664974 624.0 + 0 ENSG00000225696.1 processed_pseudogene ZNF70P1 2 OTTHUMG00000140131.1 +2040 GL000256.2 HAVANA gene 4686438 4688337 992.0 + 0 ENSG00000234251.1 processed_pseudogene HTATSF1P1 2 OTTHUMG00000140129.1 +2041 GL000256.2 HAVANA gene 4698238 4703690 1374.0 + 0 ENSG00000231573.5 processed_transcript HCG25 2 OTTHUMG00000140130.1 +2042 GL000256.2 HAVANA gene 4698976 4720728 4503.0 - 0 ENSG00000236014.10 protein_coding VPS52 2 OTTHUMG00000140132.3 +2043 GL000256.2 HAVANA gene 4720691 4724211 914.0 + 0 ENSG00000227794.5 protein_coding RPS18 2 OTTHUMG00000140141.4 fragmented_locus +2044 GL000256.2 HAVANA gene 4777674 4777956 283.0 - 0 ENSG00000229396.1 processed_transcript DAXX 2 OTTHUMG00000140159.1 +2045 GL000256.2 HAVANA gene 4838070 4838171 102.0 - 0 ENSG00000226538.1 processed_pseudogene RPL35AP4 2 OTTHUMG00000140158.1 +2046 GL000256.2 HAVANA gene 4848758 4849255 498.0 - 0 ENSG00000232733.3 processed_pseudogene RPL12P1 2 OTTHUMG00000140160.1 +2047 GL000256.2 HAVANA gene 4840231 4858622 3345.0 + 0 ENSG00000233450.7 protein_coding KIFC1 2 OTTHUMG00000140157.3 +2048 GL000256.2 HAVANA gene 4859097 4865178 3596.0 + 0 ENSG00000225553.7 protein_coding PHF1 2 OTTHUMG00000140179.4 +2049 GL000256.2 HAVANA gene 4865167 4867042 1876.0 - 0 ENSG00000226492.7 protein_coding CUTA 2 OTTHUMG00000140177.5 +2050 GL000256.2 HAVANA gene 4868795 4902412 7013.0 + 0 ENSG00000227460.8 protein_coding SYNGAP1 2 OTTHUMG00000140176.4 +2051 GL000256.2 HAVANA gene 4903302 4906271 2716.0 + 0 ENSG00000236515.3 protein_coding ZBTB9 2 OTTHUMG00000140178.1 +2052 GL000257.2 HAVANA gene 4029 43731 7032.0 - 0 ENSG00000275272.4 protein_coding YTHDC1 2 OTTHUMG00000189895.3 +2053 GL000257.2 HAVANA gene 69969 70151 183.0 + 0 ENSG00000278061.2 processed_pseudogene MT2P1 2 OTTHUMG00000189896.1 +2054 GL000257.2 HAVANA gene 141140 191291 2138.0 + 0 ENSG00000274058.3 protein_coding TMPRSS11E 2 OTTHUMG00000189897.1 +2055 GL000257.2 HAVANA gene 203127 205295 973.0 - 0 ENSG00000281547.1 unprocessed_pseudogene UGT2B29P 2 OTTHUMG00000189898.1 +2056 GL000257.2 HAVANA gene 222964 246983 2112.0 - 0 ENSG00000277132.2 protein_coding UGT2B15 2 OTTHUMG00000189899.1 +2057 GL000257.2 HAVANA gene 280947 288841 750.0 - 0 ENSG00000281154.1 unprocessed_pseudogene AC019173.1 2 OTTHUMG00000189900.1 +2058 GL000257.2 HAVANA gene 360644 363500 714.0 + 0 ENSG00000280740.1 unprocessed_pseudogene AC226496.4 2 OTTHUMG00000189901.1 +2059 GL000257.2 HAVANA gene 390014 390746 733.0 + 0 ENSG00000280626.1 unprocessed_pseudogene AC226496.2 2 OTTHUMG00000189902.1 +2060 GL000257.2 HAVANA gene 392012 407215 1931.0 + 0 ENSG00000275190.3 protein_coding UGT2B10 2 OTTHUMG00000189903.1 +2061 GL000257.2 HAVANA gene 410232 410387 156.0 - 0 ENSG00000280720.1 unprocessed_pseudogene AC226496.3 2 OTTHUMG00000189904.1 +2062 GL000257.2 HAVANA gene 437351 437629 279.0 - 0 ENSG00000281174.1 unprocessed_pseudogene AC226496.7 2 OTTHUMG00000189905.1 +2063 GL000257.2 HAVANA gene 453645 456150 491.0 - 0 ENSG00000281890.1 unprocessed_pseudogene AC226496.10 2 OTTHUMG00000189906.1 +2064 GL000257.2 HAVANA gene 459904 460459 556.0 - 0 ENSG00000280578.1 processed_pseudogene AC226496.1 2 OTTHUMG00000189907.1 +2065 GL000257.2 HAVANA gene 476670 476929 260.0 - 0 ENSG00000280794.1 unprocessed_pseudogene AC226496.5 2 OTTHUMG00000189908.1 +2066 GL000257.2 HAVANA gene 477027 483002 477.0 - 0 ENSG00000281704.1 lincRNA AC226496.9 2 OTTHUMG00000189909.1 +2067 GL000257.2 HAVANA gene 483937 484053 117.0 - 0 ENSG00000281127.1 unprocessed_pseudogene AC226496.6 2 OTTHUMG00000189910.1 +2068 GL000257.2 HAVANA gene 490947 500760 711.0 - 0 ENSG00000281612.1 unprocessed_pseudogene AC226496.8 2 OTTHUMG00000189911.1 +2069 GL000257.2 HAVANA gene 504482 527810 3062.0 - 0 ENSG00000278216.3 protein_coding UGT2A3 2 OTTHUMG00000189912.1 +2070 GL000257.2 HAVANA gene 549018 552012 695.0 - 0 ENSG00000281510.1 unprocessed_pseudogene AC021146.15 2 OTTHUMG00000189913.1 +2071 GL000257.2 HAVANA gene 561028 564552 545.0 - 0 ENSG00000280504.1 unprocessed_pseudogene AC021146.13 2 OTTHUMG00000189914.1 +2072 GL000257.2 HAVANA gene 572954 573728 775.0 - 0 ENSG00000280525.1 processed_pseudogene AC021146.14 2 OTTHUMG00000189915.1 +2073 GL000257.2 HAVANA gene 580875 586022 588.0 - 0 ENSG00000281308.1 unprocessed_pseudogene UGT2B27P 2 OTTHUMG00000189916.1 +2074 GL000258.2 ENSEMBL gene 17869 18000 132.0 - 0 ENSG00000283454.1 rRNA_pseudogene AC003070.6 3 +2075 GL000258.2 HAVANA gene 61905 62560 386.0 - 0 ENSG00000281837.1 lincRNA AC217778.1 2 OTTHUMG00000190384.1 +2076 GL000258.2 HAVANA gene 87453 87998 457.0 + 0 ENSG00000281898.1 antisense AC217778.2 2 OTTHUMG00000190386.1 +2077 GL000258.2 HAVANA gene 84423 124856 7684.0 - 0 ENSG00000276836.4 protein_coding ARHGAP27 2 OTTHUMG00000190385.2 +2078 GL000258.2 HAVANA gene 126335 181190 7876.0 - 0 ENSG00000277111.3 protein_coding PLEKHM1 2 OTTHUMG00000190358.4 +2079 GL000258.2 ENSEMBL gene 213564 213844 281.0 - 0 ENSG00000278357.1 misc_RNA RF00017 3 +2080 GL000258.2 HAVANA gene 195712 241065 6497.0 - 0 ENSG00000274332.3 protein_coding LRRC37A2 2 OTTHUMG00000190359.1 ncRNA_host +2081 GL000258.2 HAVANA gene 242033 247428 472.0 - 0 ENSG00000281364.1 unprocessed_pseudogene AC217769.1 2 OTTHUMG00000190360.1 +2082 GL000258.2 HAVANA gene 264219 378518 1471.0 - 0 ENSG00000280810.1 unprocessed_pseudogene NSFP1 2 OTTHUMG00000190361.1 +2083 GL000258.2 ENSEMBL gene 431481 431761 281.0 - 0 ENSG00000278553.1 misc_RNA RF00017 3 +2084 GL000258.2 HAVANA gene 413625 459002 6507.0 - 0 ENSG00000278742.3 protein_coding LRRC37A 2 OTTHUMG00000190363.1 ncRNA_host +2085 GL000258.2 HAVANA gene 389590 511415 3800.0 + 0 ENSG00000275748.4 protein_coding ARL17B 2 OTTHUMG00000190362.1 +2086 GL000258.2 HAVANA gene 525964 527032 1069.0 + 0 ENSG00000281642.1 processed_pseudogene AC127032.1 2 OTTHUMG00000190364.1 +2087 GL000258.2 HAVANA gene 542478 543471 994.0 - 0 ENSG00000281815.1 processed_pseudogene AC127032.2 2 OTTHUMG00000190365.1 +2088 GL000258.2 ENSEMBL gene 571714 571815 102.0 + 0 ENSG00000274754.1 misc_RNA RF00019 3 +2089 GL000258.2 HAVANA gene 590243 593390 976.0 - 0 ENSG00000281569.1 antisense KANSL1-AS1 2 OTTHUMG00000190367.1 +2090 GL000258.2 HAVANA gene 752848 753305 304.0 - 0 ENSG00000280735.1 antisense AC217779.1 2 OTTHUMG00000190368.1 +2091 GL000258.2 HAVANA gene 561512 758707 13951.0 + 0 ENSG00000275867.3 protein_coding KANSL1 2 OTTHUMG00000190366.3 ncRNA_host +2092 GL000258.2 HAVANA gene 788696 789140 445.0 - 0 ENSG00000281139.1 protein_coding STH 2 OTTHUMG00000190370.1 overlapping_locus +2093 GL000258.2 ENSEMBL gene 856248 856525 278.0 - 0 ENSG00000277055.1 misc_RNA RF00017 3 +2094 GL000258.2 HAVANA gene 877604 880712 759.0 + 0 ENSG00000280786.1 antisense BX544879.1 2 OTTHUMG00000190372.1 +2095 GL000258.2 HAVANA gene 889441 892431 2991.0 - 0 ENSG00000281284.1 sense_intronic MAPT-IT1 2 OTTHUMG00000190373.1 overlapping_locus +2096 GL000258.2 HAVANA gene 760287 893653 14756.0 - 0 ENSG00000276155.4 protein_coding MAPT 2 OTTHUMG00000190369.2 ncRNA_host,overlapping_locus +2097 GL000258.2 HAVANA gene 941109 943346 2238.0 - 0 ENSG00000278194.2 protein_coding SPPL2C 2 OTTHUMG00000190375.1 +2098 GL000258.2 HAVANA gene 892614 944825 1919.0 + 0 ENSG00000281578.1 antisense MAPT-AS1 2 OTTHUMG00000190374.1 +2099 GL000258.2 ENSEMBL gene 952323 1003890 2664.0 - 0 ENSG00000278232.4 protein_coding CRHR1 3 +2100 GL000258.2 HAVANA gene 1186488 1187956 1469.0 + 0 ENSG00000281283.1 processed_pseudogene MAPK8IP1P1 2 OTTHUMG00000190376.1 +2101 GL000258.2 HAVANA gene 1209456 1211092 662.0 + 0 ENSG00000281144.1 transcribed_unprocessed_pseudogene AC225613.1 2 OTTHUMG00000190377.1 +2102 GL000258.2 ENSEMBL gene 1350720 1350821 102.0 + 0 ENSG00000275775.1 misc_RNA RF00019 3 +2103 GL000258.2 HAVANA gene 1397272 1398561 1290.0 + 0 ENSG00000281487.1 processed_pseudogene AC139677.4 2 OTTHUMG00000190391.1 +2104 GL000258.2 HAVANA gene 1460410 1461403 994.0 + 0 ENSG00000281336.1 processed_pseudogene AC139677.3 2 OTTHUMG00000190387.1 +2105 GL000258.2 HAVANA gene 1475345 1476416 1072.0 - 0 ENSG00000281922.1 processed_pseudogene AC139677.5 2 OTTHUMG00000190392.1 +2106 GL000258.2 HAVANA gene 1490043 1495436 470.0 + 0 ENSG00000281797.1 unprocessed_pseudogene RDM1P2 2 OTTHUMG00000190378.1 +2107 GL000258.2 ENSEMBL gene 1523630 1523910 281.0 + 0 ENSG00000275574.1 misc_RNA RF00017 3 +2108 GL000258.2 HAVANA gene 1496402 1541763 6508.0 + 0 ENSG00000275621.3 protein_coding AC139677.1 2 OTTHUMG00000190388.1 ncRNA_host +2109 GL000258.2 HAVANA gene 1544936 1548903 2185.0 - 0 ENSG00000281693.1 sense_intronic AC217775.1 2 OTTHUMG00000190390.1 +2110 GL000258.2 HAVANA gene 1502797 1565746 4806.0 - 0 ENSG00000275949.5 protein_coding AC139677.2 2 OTTHUMG00000190389.1 +2111 GL000258.2 HAVANA gene 1576739 1743341 5005.0 + 0 ENSG00000278174.3 protein_coding NSF 2 OTTHUMG00000190379.2 +2112 GL000258.2 ENSEMBL gene 1748388 1804487 3352.0 - 0 ENSG00000277626.1 protein_coding WNT3 3 +2113 GL339449.2 HAVANA gene 942 13309 1530.0 + 0 ENSG00000278461.4 protein_coding MRPS36 2 OTTHUMG00000175322.1 +2114 GL339449.2 HAVANA gene 17975 60595 2415.0 + 0 ENSG00000277273.5 protein_coding CDK7 2 OTTHUMG00000175323.2 +2115 GL339449.2 HAVANA gene 96535 97036 502.0 - 0 ENSG00000275282.1 processed_pseudogene CFL1P5 2 OTTHUMG00000175325.1 overlapping_locus +2116 GL339449.2 HAVANA gene 64464 115923 6752.0 - 0 ENSG00000277868.4 protein_coding CCDC125 2 OTTHUMG00000175324.2 overlapping_locus +2117 GL339449.2 HAVANA gene 117043 117363 321.0 + 0 ENSG00000275346.1 processed_pseudogene CHCHD2P2 2 OTTHUMG00000175326.1 +2118 GL339449.2 HAVANA gene 133129 133638 510.0 + 0 ENSG00000279830.1 processed_pseudogene NDUFB9P1 2 OTTHUMG00000189432.1 +2119 GL339449.2 HAVANA gene 147938 153209 2575.0 - 0 ENSG00000276463.4 protein_coding TAF9 2 OTTHUMG00000189433.1 overlapping_locus +2120 GL339449.2 HAVANA gene 134177 153209 2162.0 - 0 ENSG00000279247.3 protein_coding AK6 2 OTTHUMG00000175327.4 overlapping_locus +2121 GL339449.2 HAVANA gene 152489 198224 4159.0 + 0 ENSG00000276618.4 protein_coding RAD17 2 OTTHUMG00000175328.2 +2122 GL339449.2 HAVANA gene 198535 227323 4922.0 + 0 ENSG00000274671.4 protein_coding MARVELD2 2 OTTHUMG00000175329.5 +2123 GL339449.2 HAVANA gene 252770 253023 254.0 + 0 ENSG00000274567.1 processed_pseudogene RPS27P14 2 OTTHUMG00000175331.1 +2124 GL339449.2 ENSEMBL gene 261898 262166 269.0 - 0 ENSG00000275420.1 misc_RNA RF00017 3 +2125 GL339449.2 HAVANA gene 260375 285363 427.0 - 0 ENSG00000278096.1 processed_transcript AC142525.2 2 OTTHUMG00000175332.1 ncRNA_host +2126 GL339449.2 ENSEMBL gene 313553 313657 105.0 - 0 ENSG00000277139.1 snRNA RF00026 3 +2127 GL339449.2 HAVANA gene 275189 339606 5318.0 + 0 ENSG00000273814.4 protein_coding OCLN 2 OTTHUMG00000175333.4 +2128 GL339449.2 ENSEMBL gene 340677 342255 75.0 - 0 ENSG00000280514.1 protein_coding AC142525.4 3 +2129 GL339449.2 HAVANA gene 343156 375823 5997.0 + 0 ENSG00000275045.4 protein_coding GTF2H2 2 OTTHUMG00000175351.5 +2130 GL339449.2 HAVANA gene 376438 378180 1216.0 + 0 ENSG00000274434.1 lincRNA AC142525.1 2 OTTHUMG00000176694.1 +2131 GL339449.2 HAVANA gene 389078 390919 1842.0 - 0 ENSG00000279234.1 TEC AC142525.3 2 OTTHUMG00000176695.1 +2132 GL339449.2 HAVANA gene 385732 442341 8426.0 + 0 ENSG00000278613.4 protein_coding NAIP 2 OTTHUMG00000175350.5 +2133 GL339449.2 HAVANA gene 443049 444315 1267.0 - 0 ENSG00000280235.1 TEC AC139494.7 2 OTTHUMG00000176696.1 +2134 GL339449.2 HAVANA gene 477955 479567 1613.0 + 0 ENSG00000285499.1 antisense AC139494.8 2 OTTHUMG00000192404.1 +2135 GL339449.2 HAVANA gene 456849 485731 2954.0 - 0 ENSG00000277773.4 protein_coding SMN2 2 OTTHUMG00000175340.3 +2136 GL339449.2 HAVANA gene 492256 510143 3051.0 - 0 ENSG00000278839.4 protein_coding SERF1B 2 OTTHUMG00000175339.3 +2137 GL339449.2 HAVANA gene 541840 542823 984.0 - 0 ENSG00000275311.1 lincRNA AC139494.3 2 OTTHUMG00000176821.1 overlapping_locus +2138 GL339449.2 HAVANA gene 544748 545454 707.0 - 0 ENSG00000277036.1 lincRNA AC139494.6 2 OTTHUMG00000176822.1 overlapping_locus +2139 GL339449.2 HAVANA gene 550244 550538 295.0 + 0 ENSG00000276909.1 unprocessed_pseudogene AC139494.5 2 OTTHUMG00000175348.1 +2140 GL339449.2 HAVANA gene 550095 551950 1856.0 - 0 ENSG00000273847.1 lincRNA AC139494.2 2 OTTHUMG00000176823.1 overlapping_locus +2141 GL339449.2 HAVANA gene 597734 598171 438.0 - 0 ENSG00000275825.1 lincRNA AC139494.4 2 OTTHUMG00000176824.1 overlapping_locus +2142 GL339449.2 HAVANA gene 609546 610128 583.0 - 0 ENSG00000275536.1 lincRNA AC118459.1 2 OTTHUMG00000176825.1 overlapping_locus +2143 GL339449.2 HAVANA gene 538259 631980 4725.0 - 0 ENSG00000273656.4 transcribed_unprocessed_pseudogene AC139494.1 2 OTTHUMG00000176697.2 overlapping_locus +2144 GL339449.2 HAVANA gene 639236 681428 1296.0 - 0 ENSG00000277606.4 transcribed_unprocessed_pseudogene AC118459.2 2 OTTHUMG00000176699.2 +2145 GL339449.2 HAVANA gene 847225 917372 1773.0 + 0 ENSG00000276794.1 transcribed_unprocessed_pseudogene AC108108.1 2 OTTHUMG00000176826.1 +2146 GL339449.2 HAVANA gene 934106 951050 1073.0 - 0 ENSG00000273715.4 transcribed_unprocessed_pseudogene AC138827.1 2 OTTHUMG00000176829.1 +2147 GL339449.2 HAVANA gene 962951 964695 1218.0 - 0 ENSG00000273909.1 lincRNA AC138827.2 2 OTTHUMG00000176830.1 +2148 GL339449.2 HAVANA gene 965310 997934 5368.0 - 0 ENSG00000274675.4 protein_coding GTF2H2C_2 2 OTTHUMG00000176831.1 +2149 GL339449.2 HAVANA gene 1004472 1023458 677.0 - 0 ENSG00000274741.1 unprocessed_pseudogene OCLNP1 2 OTTHUMG00000176832.1 +2150 GL339449.2 HAVANA gene 1033162 1059004 2850.0 - 0 ENSG00000277219.1 unprocessed_pseudogene AC146335.2 2 OTTHUMG00000175354.1 +2151 GL339449.2 HAVANA gene 1063244 1063538 295.0 + 0 ENSG00000273935.1 unprocessed_pseudogene CDH12P4 2 OTTHUMG00000175355.1 +2152 GL339449.2 HAVANA gene 1127876 1138342 584.0 - 0 ENSG00000273799.1 unprocessed_pseudogene AC146335.1 2 OTTHUMG00000176833.1 +2153 GL339449.2 HAVANA gene 1371179 1373401 501.0 - 0 ENSG00000277680.1 lincRNA AC139463.1 2 OTTHUMG00000175360.1 overlapping_locus +2154 GL339449.2 HAVANA gene 1374289 1384497 2853.0 + 0 ENSG00000275396.4 transcribed_unprocessed_pseudogene PMCHL2 2 OTTHUMG00000175361.1 +2155 GL339449.2 HAVANA gene 1350362 1444827 2764.0 - 0 ENSG00000275192.1 processed_transcript LINC02197 2 OTTHUMG00000175359.1 overlapping_locus +2156 GL339449.2 HAVANA gene 1444101 1445054 567.0 + 0 ENSG00000276297.1 lincRNA AC138832.3 2 OTTHUMG00000175362.1 +2157 GL339449.2 HAVANA gene 1474246 1474801 556.0 - 0 ENSG00000274506.1 processed_pseudogene AC138832.2 2 OTTHUMG00000175364.1 +2158 GL339449.2 HAVANA gene 1536137 1536331 195.0 - 0 ENSG00000274138.1 processed_pseudogene HMGN1P12 2 OTTHUMG00000175366.1 +2159 GL339449.2 HAVANA gene 1454100 1566305 12883.0 + 0 ENSG00000273873.4 protein_coding BDP1 2 OTTHUMG00000175363.1 +2160 GL339449.2 HAVANA gene 1585782 1602953 1250.0 + 0 ENSG00000275300.4 protein_coding MCCC2 2 OTTHUMG00000175367.4 +2161 GL383518.1 ENSEMBL gene 129 426 298.0 + 0 ENSG00000275531.1 misc_RNA RF00017 3 +2162 GL383518.1 HAVANA gene 13303 14347 752.0 - 0 ENSG00000262767.1 processed_pseudogene GEMIN2P1 2 OTTHUMG00000175254.1 +2163 GL383518.1 ENSEMBL gene 20798 21095 298.0 + 0 ENSG00000276295.1 misc_RNA RF00017 3 +2164 GL383518.1 HAVANA gene 33993 35016 713.0 - 0 ENSG00000262994.1 processed_pseudogene AC217323.1 2 OTTHUMG00000176350.1 +2165 GL383518.1 ENSEMBL gene 42953 43054 102.0 - 0 ENSG00000262469.1 misc_RNA RF00019 3 +2166 GL383518.1 HAVANA gene 63552 67928 235.0 - 0 ENSG00000263130.1 antisense AL513523.7 2 OTTHUMG00000175256.1 overlapping_locus +2167 GL383518.1 HAVANA gene 67684 68877 316.0 - 0 ENSG00000263275.1 antisense AL513523.8 2 OTTHUMG00000175257.1 overlapping_locus +2168 GL383518.1 ENSEMBL gene 89072 90780 1186.0 - 0 ENSG00000269823.1 protein_coding AL513523.9 3 +2169 GL383518.1 HAVANA gene 44768 91509 10450.0 + 0 ENSG00000262826.5 protein_coding INTS3 2 OTTHUMG00000175255.2 overlapping_locus +2170 GL383518.1 HAVANA gene 91055 96858 5470.0 + 0 ENSG00000263163.5 protein_coding SLC27A3 2 OTTHUMG00000175258.3 overlapping_locus +2171 GL383518.1 ENSEMBL gene 102421 102522 102.0 - 0 ENSG00000262710.1 misc_RNA RF00019 3 +2172 GL383518.1 HAVANA gene 111874 118792 2040.0 + 0 ENSG00000262299.1 unprocessed_pseudogene AL513523.6 2 OTTHUMG00000175259.1 +2173 GL383518.1 HAVANA gene 121426 145049 7235.0 - 0 ENSG00000261992.2 protein_coding GATAD2B 2 OTTHUMG00000175260.2 overlapping_locus +2174 GL383518.1 HAVANA gene 168807 170115 1309.0 - 0 ENSG00000262025.1 processed_pseudogene AL513523.5 2 OTTHUMG00000175261.1 overlapping_locus +2175 GL383519.1 HAVANA gene 798 3290 991.0 - 0 ENSG00000262734.1 unprocessed_pseudogene AC217785.2 2 OTTHUMG00000176388.1 +2176 GL383519.1 HAVANA gene 15377 18726 837.0 + 0 ENSG00000261905.1 unprocessed_pseudogene AC217785.1 2 OTTHUMG00000176389.1 +2177 GL383519.1 HAVANA gene 19396 23904 1552.0 - 0 ENSG00000263231.1 unprocessed_pseudogene AC217785.3 2 OTTHUMG00000175263.2 +2178 GL383519.1 HAVANA gene 35998 39348 838.0 + 0 ENSG00000263037.1 unprocessed_pseudogene MTX1P1 2 OTTHUMG00000175264.1 +2179 GL383519.1 HAVANA gene 39471 49885 4045.0 - 0 ENSG00000262446.5 protein_coding GBA 2 OTTHUMG00000175265.1 +2180 GL383519.1 HAVANA gene 52228 60506 4468.0 - 0 ENSG00000262666.5 protein_coding FAM189B 2 OTTHUMG00000175266.2 +2181 GL383519.1 HAVANA gene 61002 67453 2442.0 - 0 ENSG00000263290.5 protein_coding SCAMP3 2 OTTHUMG00000175267.1 +2182 GL383519.1 HAVANA gene 67891 83514 3670.0 - 0 ENSG00000261893.5 protein_coding CLK2 2 OTTHUMG00000175268.1 +2183 GL383519.1 HAVANA gene 82606 94871 4121.0 + 0 ENSG00000263324.5 protein_coding HCN3 2 OTTHUMG00000175269.1 +2184 GL383519.1 HAVANA gene 94862 106457 2618.0 - 0 ENSG00000262785.5 protein_coding PKLR 2 OTTHUMG00000175270.1 +2185 GL383520.2 HAVANA gene 164628 182350 728.0 - 0 ENSG00000263014.5 protein_coding ATP6V1G3 2 OTTHUMG00000175271.1 +2186 GL383520.2 HAVANA gene 239129 240273 363.0 - 0 ENSG00000262375.1 lincRNA AL157402.4 2 OTTHUMG00000175272.1 +2187 GL383520.2 HAVANA gene 298958 308466 416.0 - 0 ENSG00000262237.1 antisense AL157402.3 2 OTTHUMG00000175274.1 +2188 GL383520.2 HAVANA gene 320539 321438 553.0 - 0 ENSG00000262210.1 processed_pseudogene PEBP1P3 2 OTTHUMG00000175275.1 +2189 GL383520.2 HAVANA gene 280076 363881 5068.0 + 0 ENSG00000262418.5 protein_coding PTPRC 2 OTTHUMG00000175273.3 +2190 GL383521.1 HAVANA gene 6693 7390 698.0 - 0 ENSG00000277354.1 protein_coding CRIM1 2 OTTHUMG00000175308.4 +2191 GL383521.1 HAVANA gene 8202 8571 370.0 + 0 ENSG00000279215.1 lincRNA AC009414.4 2 OTTHUMG00000189400.1 +2192 GL383521.1 HAVANA gene 69519 69961 443.0 + 0 ENSG00000278476.1 processed_pseudogene AC009414.3 2 OTTHUMG00000175307.1 +2193 GL383522.1 HAVANA gene 1110 35154 3498.0 + 0 ENSG00000275326.4 protein_coding NOSTRIN 2 OTTHUMG00000175309.3 +2194 GL383522.1 HAVANA gene 87867 96622 3120.0 + 0 ENSG00000278373.4 protein_coding G6PC2 2 OTTHUMG00000175311.1 +2195 GL383522.1 HAVANA gene 3770 99998 1831.0 - 0 ENSG00000277909.4 protein_coding SPC25 2 OTTHUMG00000175310.2 +2196 GL383522.1 HAVANA gene 109565 123060 2040.0 - 0 ENSG00000276582.1 protein_coding ABCB11 2 OTTHUMG00000175312.2 +2197 GL383526.1 HAVANA gene 47809 68591 580.0 + 0 ENSG00000262411.1 lincRNA LINC02066 2 OTTHUMG00000175314.1 +2198 GL383526.1 HAVANA gene 172616 176304 129.0 - 0 ENSG00000262466.5 antisense AADACL2-AS1 2 OTTHUMG00000175316.1 +2199 GL383526.1 HAVANA gene 155089 180671 3230.0 + 0 ENSG00000261846.2 protein_coding AADACL2 2 OTTHUMG00000175315.3 +2200 GL383527.1 HAVANA gene 1312 30896 1282.0 - 0 ENSG00000262505.2 protein_coding AC093830.1 2 OTTHUMG00000175317.3 +2201 GL383527.1 HAVANA gene 19361 85029 5264.0 + 0 ENSG00000262635.5 protein_coding TDO2 2 OTTHUMG00000175318.2 +2202 GL383527.1 HAVANA gene 88741 118534 2954.0 - 0 ENSG00000263238.1 protein_coding CTSO 2 OTTHUMG00000175319.1 +2203 GL383528.1 HAVANA gene 139652 151478 545.0 + 0 ENSG00000263270.5 lincRNA AC093689.2 2 OTTHUMG00000175320.1 +2204 GL383531.1 ENSEMBL gene 69133 69235 103.0 - 0 ENSG00000262922.1 snRNA RNU6-164P 3 +2205 GL383531.1 HAVANA gene 119781 122748 600.0 + 0 ENSG00000262513.1 lincRNA AC091996.1 2 OTTHUMG00000175369.1 +2206 GL383532.1 HAVANA gene 32712 77603 195.0 - 0 ENSG00000273954.1 lincRNA LINC01194 2 OTTHUMG00000175370.2 +2207 GL383533.1 HAVANA gene 9745 10004 260.0 + 0 ENSG00000277783.1 processed_pseudogene AL078601.5 2 OTTHUMG00000175375.1 +2208 GL383533.1 HAVANA gene 25607 26615 474.0 - 0 ENSG00000273741.1 lincRNA AL078601.4 2 OTTHUMG00000175374.1 +2209 GL383533.1 HAVANA gene 40138 40672 535.0 + 0 ENSG00000282623.1 processed_pseudogene AL078601.7 2 OTTHUMG00000177321.2 +2210 GL383533.1 HAVANA gene 89071 89960 890.0 - 0 ENSG00000273605.1 processed_pseudogene AC209234.1 2 OTTHUMG00000191147.1 +2211 GL383533.1 HAVANA gene 120031 120301 271.0 + 0 ENSG00000278697.1 processed_pseudogene AL078601.6 2 OTTHUMG00000175373.1 +2212 GL383534.2 HAVANA gene 493 21836 3133.0 + 0 ENSG00000262327.7 protein_coding AGK 2 OTTHUMG00000175376.2 +2213 GL383534.2 HAVANA gene 18973 23402 770.0 - 0 ENSG00000262671.1 processed_transcript AC004918.2 2 OTTHUMG00000175377.1 overlapping_locus +2214 GL383534.2 HAVANA gene 23320 68748 7356.0 - 0 ENSG00000262599.5 protein_coding KIAA1147 2 OTTHUMG00000175378.1 overlapping_locus +2215 GL383534.2 ENSEMBL gene 100584 100748 165.0 + 0 ENSG00000262656.1 snRNA RF00003 3 +2216 GL383534.2 HAVANA gene 80953 103871 3061.0 + 0 ENSG00000263042.5 protein_coding WEE2 2 OTTHUMG00000175380.2 ncRNA_host +2217 GL383534.2 HAVANA gene 76938 110946 3504.0 - 0 ENSG00000261994.5 processed_transcript WEE2-AS1 2 OTTHUMG00000175379.1 +2218 GL383534.2 HAVANA gene 110921 119126 4610.0 + 0 ENSG00000262771.5 protein_coding SSBP1 2 OTTHUMG00000175381.4 +2219 GL383539.1 HAVANA gene 62864 64139 1276.0 - 0 ENSG00000263127.1 processed_pseudogene RPL4P5 2 OTTHUMG00000175382.1 +2220 GL383540.1 HAVANA gene 4774 6120 210.0 - 0 ENSG00000280745.1 unprocessed_pseudogene AC208386.1 2 OTTHUMG00000175383.2 +2221 GL383540.1 HAVANA gene 66920 68807 216.0 + 0 ENSG00000274039.1 antisense AL355140.2 2 OTTHUMG00000175385.1 +2222 GL383540.1 HAVANA gene 21985 70597 9960.0 - 0 ENSG00000276497.3 protein_coding APBA1 2 OTTHUMG00000175384.4 +2223 GL383541.1 HAVANA gene 63185 89754 622.0 - 0 ENSG00000277409.1 antisense MAMDC2-AS1 2 OTTHUMG00000175387.1 +2224 GL383541.1 HAVANA gene 19469 152750 2503.0 + 0 ENSG00000278608.1 protein_coding MAMDC2 2 OTTHUMG00000175386.4 +2225 GL383541.1 HAVANA gene 129008 157856 3392.0 - 0 ENSG00000277517.1 processed_transcript MAMDC2-AS1 2 OTTHUMG00000175388.1 +2226 GL383541.1 ENSEMBL gene 170539 170718 180.0 - 0 ENSG00000274806.1 snRNA RF00004 3 +2227 GL383542.1 HAVANA gene 1623 2363 741.0 + 0 ENSG00000276374.1 processed_pseudogene AL451142.3 2 OTTHUMG00000175389.1 +2228 GL383542.1 HAVANA gene 8689 11156 2090.0 - 0 ENSG00000278688.1 processed_pseudogene AC215799.1 2 OTTHUMG00000175390.1 +2229 GL383545.1 HAVANA gene 3015 3203 189.0 + 0 ENSG00000276777.1 unprocessed_pseudogene ARMC4P1 2 OTTHUMG00000174836.2 +2230 GL383545.1 ENSEMBL gene 29466 29572 107.0 + 0 ENSG00000278036.1 snRNA RF00026 3 +2231 GL383545.1 ENSEMBL gene 97147 97253 107.0 - 0 ENSG00000273501.1 snRNA RF00026 3 +2232 GL383545.1 HAVANA gene 93003 102898 808.0 - 0 ENSG00000275336.1 unprocessed_pseudogene AL355493.3 2 OTTHUMG00000174837.1 +2233 GL383545.1 HAVANA gene 111363 111936 574.0 - 0 ENSG00000273681.1 processed_pseudogene FAM210CP 2 OTTHUMG00000174838.1 +2234 GL383545.1 HAVANA gene 139784 140008 225.0 - 0 ENSG00000278364.1 processed_pseudogene TRIAP1P1 2 OTTHUMG00000174839.1 +2235 GL383545.1 HAVANA gene 159833 176014 2529.0 - 0 ENSG00000276595.4 protein_coding PTCHD3 2 OTTHUMG00000174840.1 +2236 GL383546.1 HAVANA gene 1492 1693 202.0 + 0 ENSG00000275985.1 unprocessed_pseudogene ANKRD30BP3 2 OTTHUMG00000174841.1 +2237 GL383546.1 HAVANA gene 5850 6195 346.0 - 0 ENSG00000278121.1 lincRNA AL512324.2 2 OTTHUMG00000174842.1 +2238 GL383546.1 ENSEMBL gene 13558 13664 107.0 - 0 ENSG00000275615.1 snRNA RNU6-1207P 3 +2239 GL383546.1 HAVANA gene 12060 23091 882.0 - 0 ENSG00000282156.1 unprocessed_pseudogene AL512324.4 2 OTTHUMG00000191148.1 +2240 GL383546.1 HAVANA gene 56794 72129 1139.0 - 0 ENSG00000273495.1 unprocessed_pseudogene CUBNP2 2 OTTHUMG00000174843.1 +2241 GL383546.1 HAVANA gene 82953 83891 939.0 + 0 ENSG00000274650.1 unitary_pseudogene OR6D1P 2 OTTHUMG00000174844.1 +2242 GL383546.1 HAVANA gene 127422 140376 2174.0 - 0 ENSG00000277495.4 protein_coding OR13A1 2 OTTHUMG00000174845.1 +2243 GL383546.1 HAVANA gene 215007 286950 3730.0 + 0 ENSG00000275565.4 protein_coding ALOX5 2 OTTHUMG00000174846.1 +2244 GL383546.1 HAVANA gene 285401 293952 462.0 - 0 ENSG00000276446.1 antisense AL731567.2 2 OTTHUMG00000174847.1 +2245 GL383546.1 HAVANA gene 295418 305158 5903.0 - 0 ENSG00000278545.4 protein_coding MARCH8 2 OTTHUMG00000174848.3 +2246 GL383550.2 HAVANA gene 4206 4864 448.0 - 0 ENSG00000262201.2 processed_transcript LINC02403 2 OTTHUMG00000174861.2 +2247 GL383550.2 HAVANA gene 117154 118120 967.0 + 0 ENSG00000262082.1 processed_pseudogene AC084033.4 2 OTTHUMG00000174860.1 +2248 GL383550.2 ENSEMBL gene 123638 123950 313.0 + 0 ENSG00000262776.1 misc_RNA RN7SKP65 3 +2249 GL383550.2 HAVANA gene 133516 134857 633.0 - 0 ENSG00000262819.1 processed_pseudogene AC084033.6 2 OTTHUMG00000174859.1 +2250 GL383550.2 HAVANA gene 144646 160374 1373.0 - 0 ENSG00000262145.5 protein_coding ATP23 2 OTTHUMG00000174858.1 +2251 GL383550.2 HAVANA gene 165740 166841 1102.0 + 0 ENSG00000262349.2 processed_transcript AC084033.5 2 OTTHUMG00000174857.1 +2252 GL383551.1 HAVANA gene 136879 137741 775.0 + 0 ENSG00000278208.1 lincRNA AC007368.4 2 OTTHUMG00000174863.1 +2253 GL383551.1 HAVANA gene 138147 139910 1310.0 + 0 ENSG00000278711.1 lincRNA AC007368.5 2 OTTHUMG00000174864.1 +2254 GL383551.1 HAVANA gene 179637 184319 920.0 - 0 ENSG00000276226.1 lincRNA AC007368.3 2 OTTHUMG00000174865.2 +2255 GL383552.1 HAVANA gene 97954 98679 726.0 + 0 ENSG00000262159.1 processed_pseudogene RPS6P22 2 OTTHUMG00000174892.1 overlapping_locus +2256 GL383552.1 HAVANA gene 130765 131969 1205.0 - 0 ENSG00000262036.1 processed_pseudogene AC068305.3 2 OTTHUMG00000174893.1 +2257 GL383552.1 HAVANA gene 133791 133893 103.0 + 0 ENSG00000262592.2 antisense AC068305.4 2 OTTHUMG00000174891.1 overlapping_locus +2258 GL383553.2 HAVANA gene 29420 30155 736.0 + 0 ENSG00000263114.1 processed_pseudogene AC079953.2 2 OTTHUMG00000174896.1 +2259 GL383553.2 ENSEMBL gene 58919 59025 107.0 + 0 ENSG00000261867.1 snRNA RF00026 3 +2260 GL383553.2 HAVANA gene 48085 102804 3983.0 + 0 ENSG00000262217.3 protein_coding SLC5A8 2 OTTHUMG00000174895.2 ncRNA_host +2261 GL383553.2 HAVANA gene 135832 152874 1315.0 - 0 ENSG00000262139.9 protein_coding ANO4 2 OTTHUMG00000174894.3 +2262 GL383554.1 ENSEMBL gene 3653 3730 78.0 + 0 ENSG00000274700.1 protein_coding AC091304.7 3 +2263 GL383554.1 HAVANA gene 8082 10112 524.0 - 0 ENSG00000277278.4 protein_coding HERC2 2 OTTHUMG00000174897.4 +2264 GL383554.1 HAVANA gene 20190 24559 726.0 + 0 ENSG00000274801.1 unprocessed_pseudogene AC091304.8 2 OTTHUMG00000178010.1 +2265 GL383554.1 HAVANA gene 34437 34603 167.0 + 0 ENSG00000282126.1 processed_pseudogene AC138747.6 2 OTTHUMG00000190759.1 +2266 GL383554.1 HAVANA gene 37010 45974 3031.0 - 0 ENSG00000276455.1 unprocessed_pseudogene AC138747.5 2 OTTHUMG00000178011.1 +2267 GL383554.1 HAVANA gene 49782 53644 667.0 - 0 ENSG00000275855.1 unprocessed_pseudogene AC138747.3 2 OTTHUMG00000190760.1 +2268 GL383554.1 ENSEMBL gene 75120 75377 258.0 + 0 ENSG00000274122.1 misc_RNA RF00017 3 +2269 GL383554.1 HAVANA gene 66547 79950 5675.0 + 0 ENSG00000276896.4 protein_coding GOLGA8F 2 OTTHUMG00000174898.4 ncRNA_host +2270 GL383554.1 HAVANA gene 90726 92883 2158.0 + 0 ENSG00000276143.1 processed_pseudogene AC138747.4 2 OTTHUMG00000190761.1 +2271 GL383554.1 HAVANA gene 104302 104527 226.0 + 0 ENSG00000282731.1 processed_pseudogene AC138747.10 2 OTTHUMG00000190762.1 +2272 GL383554.1 HAVANA gene 110020 110224 205.0 + 0 ENSG00000282516.1 processed_pseudogene AC138747.7 2 OTTHUMG00000178013.2 +2273 GL383554.1 HAVANA gene 115720 115924 205.0 + 0 ENSG00000282581.1 processed_pseudogene AC138747.8 2 OTTHUMG00000190763.1 +2274 GL383554.1 HAVANA gene 143715 143838 124.0 + 0 ENSG00000282587.1 processed_pseudogene AC138747.9 2 OTTHUMG00000190805.1 +2275 GL383554.1 HAVANA gene 154423 157362 576.0 - 0 ENSG00000273635.1 unprocessed_pseudogene AC138747.1 2 OTTHUMG00000178014.1 +2276 GL383554.1 HAVANA gene 172906 173026 121.0 - 0 ENSG00000273969.1 processed_pseudogene AC138747.2 2 OTTHUMG00000178015.1 +2277 GL383554.1 HAVANA gene 194556 194757 202.0 - 0 ENSG00000281946.1 unprocessed_pseudogene AC138749.8 2 OTTHUMG00000190764.1 +2278 GL383554.1 HAVANA gene 206204 208386 2183.0 - 0 ENSG00000274192.1 processed_pseudogene ABCB10P4 2 OTTHUMG00000178016.1 +2279 GL383554.1 ENSEMBL gene 223731 224020 290.0 - 0 ENSG00000276767.1 misc_RNA RF00017 3 +2280 GL383554.1 HAVANA gene 219191 232551 6417.0 - 0 ENSG00000273651.4 protein_coding GOLGA8G 2 OTTHUMG00000174899.4 ncRNA_host +2281 GL383554.1 HAVANA gene 245492 249357 622.0 + 0 ENSG00000282058.1 unprocessed_pseudogene AC138749.9 2 OTTHUMG00000178012.2 +2282 GL383554.1 HAVANA gene 253218 260959 2472.0 + 0 ENSG00000276485.2 unprocessed_pseudogene AC138749.7 2 OTTHUMG00000190765.1 +2283 GL383554.1 HAVANA gene 264568 264805 238.0 - 0 ENSG00000282531.1 processed_pseudogene AC138749.10 2 OTTHUMG00000190806.1 +2284 GL383554.1 HAVANA gene 274599 278980 725.0 - 0 ENSG00000282090.1 unprocessed_pseudogene HERC2P11 2 OTTHUMG00000190766.1 +2285 GL383554.1 HAVANA gene 289072 290703 1023.0 + 0 ENSG00000276005.1 transcribed_unprocessed_pseudogene AC138749.6 2 OTTHUMG00000174900.1 +2286 GL383555.2 HAVANA gene 848 357702 5139.0 - 0 ENSG00000277848.4 protein_coding MEGF11 2 OTTHUMG00000174901.4 +2287 GL383555.2 HAVANA gene 362454 365758 783.0 + 0 ENSG00000282280.1 lincRNA AC087382.2 2 OTTHUMG00000191139.1 +2288 GL383555.2 HAVANA gene 382453 382998 546.0 - 0 ENSG00000277844.1 antisense AC087382.1 2 OTTHUMG00000174902.1 +2289 GL383556.1 HAVANA gene 422 17854 1010.0 + 0 ENSG00000281948.1 unprocessed_pseudogene CES1P1 2 OTTHUMG00000191129.1 +2290 GL383556.1 HAVANA gene 26724 57055 2750.0 - 0 ENSG00000262243.5 protein_coding CES1 2 OTTHUMG00000178024.1 +2291 GL383556.1 HAVANA gene 70051 179945 3204.0 - 0 ENSG00000261972.5 protein_coding CES5A 2 OTTHUMG00000174905.3 +2292 GL383557.1 ENSEMBL gene 38608 38708 101.0 - 0 ENSG00000262354.1 misc_RNA RF00019 3 +2293 GL383557.1 HAVANA gene 42084 42701 618.0 - 0 ENSG00000260873.6 protein_coding SNTB2 2 OTTHUMG00000174907.4 +2294 GL383557.1 ENSEMBL gene 54055 54161 107.0 + 0 ENSG00000262579.1 snRNA RF00026 3 +2295 GL383557.1 HAVANA gene 60798 87707 4016.0 - 0 ENSG00000262788.3 protein_coding UTP4 2 OTTHUMG00000174906.6 +2296 GL383563.3 HAVANA gene 4099 16866 2096.0 - 0 ENSG00000282235.1 lincRNA AC240565.3 2 OTTHUMG00000191150.1 +2297 GL383563.3 ENSEMBL gene 30796 30899 104.0 - 0 ENSG00000277660.1 snRNA RF00026 3 +2298 GL383563.3 HAVANA gene 37494 58578 1083.0 - 0 ENSG00000282518.1 lincRNA AC240565.4 2 OTTHUMG00000191151.1 +2299 GL383563.3 HAVANA gene 77526 79067 478.0 + 0 ENSG00000277730.2 protein_coding SCGB1C2 2 OTTHUMG00000191152.1 +2300 GL383563.3 HAVANA gene 82789 120568 6448.0 - 0 ENSG00000272670.3 protein_coding DOC2B 2 OTTHUMG00000191153.1 +2301 GL383563.3 HAVANA gene 122756 130502 1183.0 - 0 ENSG00000282365.1 lincRNA LINC02091 2 OTTHUMG00000191154.1 +2302 GL383563.3 HAVANA gene 292806 293888 432.0 + 0 ENSG00000282030.1 antisense AC211856.1 2 OTTHUMG00000191155.1 +2303 GL383563.3 HAVANA gene 302640 304923 2284.0 + 0 ENSG00000263267.3 processed_transcript AC129507.5 2 OTTHUMG00000191156.1 +2304 GL383563.3 HAVANA gene 326179 329829 913.0 + 0 ENSG00000282720.1 antisense AC243301.2 2 OTTHUMG00000191158.1 overlapping_locus +2305 GL383563.3 HAVANA gene 324081 330528 748.0 + 0 ENSG00000282634.1 antisense AC243301.1 2 OTTHUMG00000191157.1 overlapping_locus +2306 GL383563.3 HAVANA gene 157541 359308 5956.0 - 0 ENSG00000262334.6 protein_coding RPH3AL 2 OTTHUMG00000174910.5 +2307 GL383564.2 HAVANA gene 8413 12183 1475.0 + 0 ENSG00000263022.1 protein_coding KRT37 2 OTTHUMG00000174921.1 +2308 GL383564.2 HAVANA gene 21161 26424 1293.0 + 0 ENSG00000262040.1 unprocessed_pseudogene AC003958.3 2 OTTHUMG00000174920.1 +2309 GL383564.2 HAVANA gene 7887 30520 4067.0 - 0 ENSG00000262603.5 antisense AC003958.5 2 OTTHUMG00000174919.1 +2310 GL383564.2 HAVANA gene 35369 39237 1596.0 + 0 ENSG00000262993.1 protein_coding KRT31 2 OTTHUMG00000174918.1 +2311 GL383564.2 HAVANA gene 50554 55289 1732.0 + 0 ENSG00000262748.1 protein_coding AC207056.1 2 OTTHUMG00000174917.3 +2312 GL383564.2 HAVANA gene 57861 62596 1732.0 + 0 ENSG00000262045.1 protein_coding KRT34 2 OTTHUMG00000178034.1 +2313 GL383564.2 HAVANA gene 70461 76767 1607.0 + 0 ENSG00000263012.1 protein_coding KRT33B 2 OTTHUMG00000174916.1 +2314 GL383564.2 HAVANA gene 89449 94169 1287.0 + 0 ENSG00000261986.1 protein_coding KRT33A 2 OTTHUMG00000174915.1 +2315 GL383564.2 HAVANA gene 104528 105629 414.0 - 0 ENSG00000262282.2 unprocessed_pseudogene AC003958.4 2 OTTHUMG00000174914.2 +2316 GL383564.2 HAVANA gene 110717 114613 870.0 - 0 ENSG00000262591.2 unprocessed_pseudogene TBC1D3P7 2 OTTHUMG00000174913.2 +2317 GL383564.2 HAVANA gene 124566 125344 779.0 + 0 ENSG00000263341.1 protein_coding KRTAP17-1 2 OTTHUMG00000174912.1 +2318 GL383564.2 HAVANA gene 131008 132561 1554.0 + 0 ENSG00000263186.1 protein_coding KRTAP16-1 2 OTTHUMG00000174911.2 +2319 GL383565.1 HAVANA gene 6554 68692 734.0 - 0 ENSG00000282128.1 lincRNA AC207965.1 2 OTTHUMG00000191305.1 +2320 GL383566.1 HAVANA gene 55073 55669 597.0 - 0 ENSG00000282753.1 lincRNA AC068594.4 2 OTTHUMG00000191313.1 overlapping_locus +2321 GL383566.1 HAVANA gene 48630 72790 1348.0 - 0 ENSG00000282649.1 lincRNA AC068594.3 2 OTTHUMG00000191312.1 overlapping_locus +2322 GL383566.1 HAVANA gene 71462 85796 1055.0 + 0 ENSG00000282302.2 protein_coding SEPT9 2 OTTHUMG00000191314.3 overlapping_locus +2323 GL383567.1 HAVANA gene 9997 21402 438.0 + 0 ENSG00000282443.1 lincRNA AC105227.4 2 OTTHUMG00000191321.1 +2324 GL383567.1 HAVANA gene 26227 26831 605.0 + 0 ENSG00000282085.1 processed_pseudogene AC105227.3 2 OTTHUMG00000191322.1 +2325 GL383567.1 ENSEMBL gene 26809 26927 119.0 + 0 ENSG00000262132.1 rRNA_pseudogene RNA5SP458 3 +2326 GL383567.1 HAVANA gene 82802 101980 2950.0 + 0 ENSG00000262634.5 protein_coding SKA1 2 OTTHUMG00000174922.3 +2327 GL383567.1 HAVANA gene 172909 173817 909.0 + 0 ENSG00000262892.1 processed_pseudogene AC013759.1 2 OTTHUMG00000174923.1 +2328 GL383567.1 HAVANA gene 275117 275798 284.0 + 0 ENSG00000282110.1 processed_transcript MAPK4 2 OTTHUMG00000191323.1 overlapping_locus +2329 GL383569.1 HAVANA gene 11699 12985 438.0 + 0 ENSG00000282433.1 lincRNA AC012572.2 2 OTTHUMG00000191327.1 +2330 GL383569.1 ENSEMBL gene 50629 50722 94.0 - 0 ENSG00000262104.2 misc_RNA RF00019 3 +2331 GL383570.1 HAVANA gene 139515 140198 684.0 + 0 ENSG00000282429.1 processed_pseudogene AC208322.1 2 OTTHUMG00000191324.1 +2332 GL383571.1 HAVANA gene 33777 34832 1056.0 + 0 ENSG00000279612.1 TEC AC231988.1 2 OTTHUMG00000191325.1 +2333 GL383571.1 HAVANA gene 127521 130693 3173.0 - 0 ENSG00000263322.1 lincRNA AC110597.2 2 OTTHUMG00000178050.1 +2334 GL383571.1 HAVANA gene 152316 159757 3305.0 + 0 ENSG00000282220.1 antisense AC110597.5 2 OTTHUMG00000178049.2 +2335 GL383571.1 HAVANA gene 162273 162476 204.0 + 0 ENSG00000282112.1 lincRNA AC110597.4 2 OTTHUMG00000191326.1 +2336 GL383571.1 HAVANA gene 152309 162707 9531.0 - 0 ENSG00000262102.1 protein_coding DSEL 2 OTTHUMG00000174924.2 +2337 GL383572.1 HAVANA gene 41670 44189 1731.0 - 0 ENSG00000262280.1 lincRNA LINC01896 2 OTTHUMG00000178052.1 +2338 GL383572.1 HAVANA gene 45390 67793 4596.0 + 0 ENSG00000263310.5 protein_coding SALL3 2 OTTHUMG00000174925.4 +2339 GL383572.1 HAVANA gene 139952 140079 128.0 + 0 ENSG00000274273.1 protein_coding ATP9B 2 OTTHUMG00000174926.4 +2340 GL383573.1 HAVANA gene 11783 33393 2174.0 + 0 ENSG00000275321.1 unprocessed_pseudogene AC010329.3 2 OTTHUMG00000178054.1 +2341 GL383573.1 HAVANA gene 83783 92110 8328.0 - 0 ENSG00000280030.1 lincRNA AC010329.4 2 OTTHUMG00000189453.1 +2342 GL383573.1 HAVANA gene 121456 122012 557.0 - 0 ENSG00000280428.1 processed_pseudogene BNIP3P24 2 OTTHUMG00000189454.1 +2343 GL383573.1 HAVANA gene 113164 144280 3110.0 + 0 ENSG00000275050.4 protein_coding ZNF66 2 OTTHUMG00000175251.4 +2344 GL383573.1 HAVANA gene 152104 159104 3056.0 + 0 ENSG00000274449.1 lincRNA AC008463.2 2 OTTHUMG00000178055.1 +2345 GL383573.1 HAVANA gene 181689 190628 351.0 - 0 ENSG00000274106.1 unprocessed_pseudogene AC008463.1 2 OTTHUMG00000178056.1 +2346 GL383573.1 HAVANA gene 270061 271990 1930.0 - 0 ENSG00000279318.1 TEC AC008739.4 2 OTTHUMG00000178058.1 +2347 GL383573.1 HAVANA gene 266498 293973 4533.0 + 0 ENSG00000278091.4 protein_coding ZNF85 2 OTTHUMG00000178057.3 +2348 GL383573.1 HAVANA gene 304333 308416 1571.0 + 0 ENSG00000277976.1 unprocessed_pseudogene KRT18P40 2 OTTHUMG00000178061.1 +2349 GL383573.1 HAVANA gene 315538 326486 575.0 + 0 ENSG00000279974.1 lincRNA AC008739.6 2 OTTHUMG00000189462.1 +2350 GL383573.1 HAVANA gene 363896 380078 3256.0 + 0 ENSG00000278780.4 protein_coding ZNF430 2 OTTHUMG00000178059.3 +2351 GL383574.1 HAVANA gene 20188 77063 4609.0 + 0 ENSG00000262860.5 protein_coding LSM14A 2 OTTHUMG00000178062.3 +2352 GL383574.1 HAVANA gene 151190 151654 465.0 - 0 ENSG00000262113.1 processed_pseudogene AC010614.1 2 OTTHUMG00000175252.1 +2353 GL383574.1 HAVANA gene 109451 155864 1538.0 + 0 ENSG00000279389.3 protein_coding KIAA0355 2 OTTHUMG00000189408.3 +2354 GL383575.2 HAVANA gene 6865 8250 1386.0 + 0 ENSG00000276999.1 unprocessed_pseudogene AC226770.1 2 OTTHUMG00000178065.1 +2355 GL383575.2 HAVANA gene 38747 39417 671.0 - 0 ENSG00000280066.1 processed_pseudogene MTDHP4 2 OTTHUMG00000189444.1 +2356 GL383575.2 HAVANA gene 70712 71381 670.0 + 0 ENSG00000279280.1 processed_pseudogene AC092364.3 2 OTTHUMG00000189445.1 +2357 GL383575.2 HAVANA gene 80991 81225 235.0 - 0 ENSG00000280218.1 unprocessed_pseudogene VN1R84P 2 OTTHUMG00000189446.1 +2358 GL383575.2 HAVANA gene 111937 114628 2692.0 + 0 ENSG00000279112.1 transcribed_processed_pseudogene BRI3BPP1 2 OTTHUMG00000189447.1 +2359 GL383575.2 HAVANA gene 83956 128739 6530.0 - 0 ENSG00000274746.4 protein_coding ZNF100 2 OTTHUMG00000178066.3 +2360 GL383575.2 HAVANA gene 129962 155050 921.0 - 0 ENSG00000280271.1 lincRNA AC092364.5 2 OTTHUMG00000189448.1 +2361 GL383575.2 HAVANA gene 161678 162384 707.0 + 0 ENSG00000279614.1 processed_pseudogene AC092364.4 2 OTTHUMG00000189449.1 +2362 GL383575.2 HAVANA gene 166140 170222 4083.0 - 0 ENSG00000279566.1 protein_coding ZNF43 2 OTTHUMG00000189450.1 +2363 GL383576.1 HAVANA gene 799 1690 566.0 + 0 ENSG00000279984.1 processed_pseudogene BNIP3P31 2 OTTHUMG00000189422.1 +2364 GL383576.1 HAVANA gene 14112 14259 148.0 - 0 ENSG00000279552.1 protein_coding ZNF729 2 OTTHUMG00000189423.2 +2365 GL383576.1 HAVANA gene 39332 40974 386.0 - 0 ENSG00000279731.1 lincRNA AC073539.5 2 OTTHUMG00000189424.1 +2366 GL383576.1 HAVANA gene 55320 57413 2094.0 + 0 ENSG00000279902.1 lincRNA AC073539.6 2 OTTHUMG00000189425.1 +2367 GL383576.1 HAVANA gene 104879 105754 574.0 - 0 ENSG00000279350.1 processed_pseudogene BNIP3P30 2 OTTHUMG00000189426.1 +2368 GL383576.1 HAVANA gene 93188 129783 3106.0 + 0 ENSG00000276219.4 protein_coding ZNF676 2 OTTHUMG00000178069.2 +2369 GL383576.1 HAVANA gene 133683 134108 426.0 + 0 ENSG00000280210.1 unprocessed_pseudogene VN1R85P 2 OTTHUMG00000189427.1 +2370 GL383576.1 HAVANA gene 167757 168342 586.0 - 0 ENSG00000279661.1 processed_pseudogene MTDHP5 2 OTTHUMG00000189428.1 +2371 GL383576.1 HAVANA gene 169893 170943 1051.0 - 0 ENSG00000275641.1 processed_pseudogene PCGF7P 2 OTTHUMG00000178068.1 +2372 GL383576.1 HAVANA gene 178385 178549 165.0 - 0 ENSG00000279577.1 processed_pseudogene AC073539.4 2 OTTHUMG00000189429.1 +2373 GL383576.1 HAVANA gene 178551 180126 720.0 + 0 ENSG00000274875.1 processed_pseudogene ZNF92P2 2 OTTHUMG00000178067.1 +2374 GL383577.2 HAVANA gene 43507 43937 431.0 - 0 ENSG00000262517.1 lincRNA AL035045.2 2 OTTHUMG00000178072.1 +2375 GL383577.2 HAVANA gene 101480 107244 663.0 + 0 ENSG00000262640.1 lincRNA AC207480.1 2 OTTHUMG00000178073.1 +2376 GL383577.2 HAVANA gene 122278 123075 632.0 - 0 ENSG00000262802.1 lincRNA AL035045.3 2 OTTHUMG00000175276.1 +2377 GL383579.2 HAVANA gene 6978 14055 626.0 + 0 ENSG00000262510.2 lincRNA LINC00308 2 OTTHUMG00000175277.1 +2378 GL383579.2 HAVANA gene 32225 33610 1386.0 - 0 ENSG00000262752.1 processed_pseudogene AP000705.5 2 OTTHUMG00000175278.1 +2379 GL383579.2 HAVANA gene 51477 51826 350.0 - 0 ENSG00000261847.1 processed_pseudogene AP000705.3 2 OTTHUMG00000175279.1 +2380 GL383579.2 ENSEMBL gene 102719 102859 141.0 + 0 ENSG00000262704.1 snRNA RNU4-45P 3 +2381 GL383579.2 HAVANA gene 107466 110340 385.0 + 0 ENSG00000262476.2 lincRNA AP000705.4 2 OTTHUMG00000175280.1 +2382 GL383580.2 HAVANA gene 736 2780 662.0 - 0 ENSG00000263141.5 protein_coding PAXBP1 2 OTTHUMG00000175283.3 +2383 GL383580.2 HAVANA gene 21595 22426 832.0 - 0 ENSG00000280072.1 TEC AP000280.2 2 OTTHUMG00000175285.1 +2384 GL383580.2 HAVANA gene 3022 29891 2487.0 + 0 ENSG00000263140.5 antisense C21orf62-AS1 2 OTTHUMG00000175284.3 +2385 GL383580.2 HAVANA gene 24486 44650 1230.0 - 0 ENSG00000262938.6 protein_coding C21orf62 2 OTTHUMG00000175286.2 +2386 GL383581.2 HAVANA gene 5408 83477 2239.0 + 0 ENSG00000262795.5 protein_coding IFNGR2 2 OTTHUMG00000175287.2 +2387 GL383581.2 HAVANA gene 27057 84140 4495.0 - 0 ENSG00000263160.6 protein_coding TMEM50B 2 OTTHUMG00000175288.2 +2388 GL383581.2 HAVANA gene 85709 86324 616.0 - 0 ENSG00000262148.1 processed_pseudogene RPS5P3 2 OTTHUMG00000175289.1 +2389 GL383581.2 HAVANA gene 86628 88387 666.0 - 0 ENSG00000263314.1 antisense AC207981.1 2 OTTHUMG00000175290.1 +2390 GL383581.2 HAVANA gene 89659 95850 2484.0 - 0 ENSG00000262911.5 protein_coding DNAJC28 2 OTTHUMG00000175291.1 +2391 GL383581.2 HAVANA gene 102653 115588 2702.0 - 0 ENSG00000262473.5 protein_coding GART 2 OTTHUMG00000175292.3 +2392 GL383582.2 HAVANA gene 7870 13300 1416.0 - 0 ENSG00000272765.2 protein_coding NDUFA6 2 OTTHUMG00000175296.2 +2393 GL383582.2 HAVANA gene 30110 31298 1189.0 - 0 ENSG00000272813.1 processed_pseudogene OLA1P1 2 OTTHUMG00000175298.1 +2394 GL383582.2 HAVANA gene 2036 46445 1625.0 + 0 ENSG00000272901.5 protein_coding SMDT1 2 OTTHUMG00000175295.3 overlapping_locus +2395 GL383582.2 HAVANA gene 13301 47696 1637.0 + 0 ENSG00000273616.4 processed_transcript NDUFA6-DT 2 OTTHUMG00000175297.2 overlapping_locus +2396 GL383582.2 HAVANA gene 46626 50120 667.0 - 0 ENSG00000262303.1 lincRNA AL021878.1 2 OTTHUMG00000175299.1 +2397 GL383582.2 HAVANA gene 50396 54770 2123.0 - 0 ENSG00000263181.6 polymorphic_pseudogene CYP2D7 2 OTTHUMG00000175300.1 +2398 GL383582.2 HAVANA gene 60079 65195 1490.0 - 0 ENSG00000262055.1 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000175301.1 +2399 GL383582.2 HAVANA gene 70204 125638 7410.0 - 0 ENSG00000262024.6 protein_coding TCF20 2 OTTHUMG00000175302.4 overlapping_locus +2400 GL383583.2 HAVANA gene 36934 40415 678.0 + 0 ENSG00000262453.1 lincRNA AL022318.3 2 OTTHUMG00000175304.1 +2401 GL383583.2 HAVANA gene 64820 64834 15.0 + 0 ENSG00000262536.1 unprocessed_pseudogene AC192820.1 2 OTTHUMG00000178074.1 +2402 GL383583.2 HAVANA gene 68449 78546 1669.0 + 0 ENSG00000262156.4 protein_coding APOBEC3A 2 OTTHUMG00000175305.3 +2403 GL383583.2 HAVANA gene 77318 83977 691.0 - 0 ENSG00000262679.1 antisense APOBEC3B-AS1 2 OTTHUMG00000175306.2 +2404 GL582966.2 HAVANA gene 3216 96131 5916.0 + 0 ENSG00000276734.4 protein_coding KIF5C 2 OTTHUMG00000175313.4 fragmented_locus +2405 GL877875.1 HAVANA gene 2310 3501 366.0 + 0 ENSG00000272877.1 unprocessed_pseudogene DDX11L8 2 OTTHUMG00000174850.1 +2406 GL877875.1 HAVANA gene 4522 22015 1817.0 - 0 ENSG00000262435.1 unprocessed_pseudogene WASH8P 2 OTTHUMG00000174849.1 +2407 GL877875.1 HAVANA gene 26667 28073 1064.0 - 0 ENSG00000262927.1 lincRNA FAM138D 2 OTTHUMG00000174851.1 +2408 GL877875.1 ENSEMBL gene 60780 63513 2734.0 + 0 ENSG00000282676.1 protein_coding AC026369.8 3 +2409 GL877875.1 HAVANA gene 100539 105865 586.0 - 0 ENSG00000262226.1 antisense AC026369.6 2 OTTHUMG00000174853.1 +2410 GL877875.1 HAVANA gene 131426 143184 5439.0 - 0 ENSG00000263137.5 antisense AC026369.7 2 OTTHUMG00000174854.1 +2411 GL877875.1 HAVANA gene 158679 160336 1101.0 - 0 ENSG00000262016.1 antisense AC026369.4 2 OTTHUMG00000174855.1 +2412 GL877875.1 HAVANA gene 160871 161722 852.0 - 0 ENSG00000262193.2 antisense AC026369.5 2 OTTHUMG00000174856.1 +2413 GL877875.1 HAVANA gene 60780 165481 3824.0 + 0 ENSG00000262607.5 protein_coding IQSEC3 2 OTTHUMG00000174852.3 +2414 GL877876.1 HAVANA gene 238 1333 1096.0 - 0 ENSG00000273326.1 protein_coding TAS2R7 2 OTTHUMG00000174866.1 +2415 GL877876.1 HAVANA gene 4757 5999 1243.0 - 0 ENSG00000272712.1 protein_coding TAS2R8 2 OTTHUMG00000174867.2 +2416 GL877876.1 HAVANA gene 7843 8874 1032.0 - 0 ENSG00000273086.1 protein_coding TAS2R9 2 OTTHUMG00000174868.3 +2417 GL877876.1 HAVANA gene 24023 25064 1042.0 - 0 ENSG00000272805.1 protein_coding TAS2R10 2 OTTHUMG00000174870.1 overlapping_locus +2418 GL877876.1 HAVANA gene 29780 30722 943.0 - 0 ENSG00000272718.1 processed_pseudogene AC006518.3 2 OTTHUMG00000174871.1 overlapping_locus +2419 GL877876.1 HAVANA gene 93649 94588 940.0 - 0 ENSG00000272751.1 processed_pseudogene AC006518.4 2 OTTHUMG00000174872.1 overlapping_locus +2420 GL877876.1 HAVANA gene 106632 108268 1637.0 - 0 ENSG00000273457.1 protein_coding TAS2R13 2 OTTHUMG00000174874.1 overlapping_locus +2421 GL877876.1 HAVANA gene 127942 131047 757.0 + 0 ENSG00000272803.5 protein_coding PRH2 2 OTTHUMG00000174875.1 +2422 GL877876.1 HAVANA gene 163131 164058 928.0 - 0 ENSG00000273144.1 processed_pseudogene TAS2R15P 2 OTTHUMG00000174877.1 overlapping_locus +2423 GL877876.1 HAVANA gene 184619 185618 1000.0 - 0 ENSG00000273431.1 protein_coding TAS2R50 2 OTTHUMG00000174878.1 overlapping_locus +2424 GL877876.1 HAVANA gene 195201 196581 1381.0 - 0 ENSG00000273092.1 protein_coding TAS2R20 2 OTTHUMG00000174879.1 overlapping_locus +2425 GL877876.1 HAVANA gene 220325 221326 1002.0 - 0 ENSG00000263028.1 protein_coding TAS2R19 2 OTTHUMG00000174880.1 overlapping_locus +2426 GL877876.1 HAVANA gene 229093 230113 1021.0 - 0 ENSG00000263097.3 protein_coding TAS2R31 2 OTTHUMG00000174881.1 overlapping_locus +2427 GL877876.1 HAVANA gene 247038 247962 925.0 - 0 ENSG00000263158.1 processed_pseudogene TAS2R63P 2 OTTHUMG00000174882.1 overlapping_locus +2428 GL877876.1 HAVANA gene 260071 261000 930.0 - 0 ENSG00000262525.3 protein_coding TAS2R46 2 OTTHUMG00000174883.2 overlapping_locus +2429 GL877876.1 HAVANA gene 275475 277877 2403.0 - 0 ENSG00000263083.1 transcribed_processed_pseudogene TAS2R64P 2 OTTHUMG00000174884.1 overlapping_locus +2430 GL877876.1 HAVANA gene 290014 291040 1027.0 - 0 ENSG00000262612.3 protein_coding TAS2R43 2 OTTHUMG00000174885.1 overlapping_locus +2431 GL877876.1 HAVANA gene 295902 295997 96.0 - 0 ENSG00000262293.1 processed_pseudogene AC242308.1 2 OTTHUMG00000174886.1 overlapping_locus +2432 GL877876.1 HAVANA gene 314060 314980 921.0 - 0 ENSG00000262829.1 unprocessed_pseudogene AC242308.2 2 OTTHUMG00000178006.1 overlapping_locus +2433 GL877876.1 HAVANA gene 327495 328424 930.0 - 0 ENSG00000261936.1 unprocessed_pseudogene TAS2R45 2 OTTHUMG00000178007.1 overlapping_locus +2434 GL877876.1 HAVANA gene 363612 365298 1687.0 - 0 ENSG00000262111.3 protein_coding TAS2R30 2 OTTHUMG00000174887.1 overlapping_locus +2435 GL877876.1 HAVANA gene 389439 390348 910.0 - 0 ENSG00000261853.1 processed_pseudogene AC134349.3 2 OTTHUMG00000174888.1 overlapping_locus +2436 GL877876.1 HAVANA gene 396744 402007 385.0 - 0 ENSG00000262531.1 sense_intronic AC134349.4 2 OTTHUMG00000174889.1 overlapping_locus +2437 GL877876.1 HAVANA gene 402018 402219 202.0 + 0 ENSG00000262986.1 processed_pseudogene SMIM10L1 2 OTTHUMG00000174890.1 +2438 GL877876.1 HAVANA gene 136112 402227 2350.0 - 0 ENSG00000261984.1 protein_coding TAS2R14 2 OTTHUMG00000174876.1 overlapping_locus +2439 GL877876.1 HAVANA gene 23666 402267 4697.0 - 0 ENSG00000263247.6 protein_coding PRR4 2 OTTHUMG00000174869.2 overlapping_locus +2440 GL949742.1 ENSEMBL gene 42887 43001 115.0 + 0 ENSG00000277995.1 snoRNA RF00425 3 +2441 GL949742.1 HAVANA gene 77262 77820 260.0 + 0 ENSG00000275151.1 processed_pseudogene AC025771.1 2 OTTHUMG00000175371.1 +2442 GL949742.1 HAVANA gene 115886 144741 2030.0 + 0 ENSG00000274882.4 lincRNA LINC02109 2 OTTHUMG00000175372.3 +2443 GL949742.1 HAVANA gene 164082 188994 548.0 + 0 ENSG00000279969.1 lincRNA AC112172.1 2 OTTHUMG00000189409.1 +2444 GL949746.1 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000275330.4 protein_coding VSTM1 3 +2445 GL949746.1 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000276604.1 protein_coding TARM1 3 +2446 GL949746.1 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000273511.4 protein_coding OSCAR 3 +2447 GL949746.1 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000274359.1 protein_coding AC012314.8 3 +2448 GL949746.1 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000274073.1 protein_coding AC012314.6 3 +2449 GL949746.1 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000277154.4 protein_coding AC012314.30 3 +2450 GL949746.1 HAVANA gene 112549 130557 6475.0 + 0 ENSG00000277114.4 protein_coding CNOT3 2 OTTHUMG00000150963.2 +2451 GL949746.1 HAVANA gene 130471 134593 943.0 - 0 ENSG00000277808.1 protein_coding LENG1 2 OTTHUMG00000150965.1 +2452 GL949746.1 HAVANA gene 134958 148022 4427.0 - 0 ENSG00000277789.4 protein_coding TMC4 2 OTTHUMG00000150964.3 +2453 GL949746.1 HAVANA gene 148185 164679 5318.0 - 0 ENSG00000276935.4 protein_coding MBOAT7 2 OTTHUMG00000150999.3 +2454 GL949746.1 HAVANA gene 164735 169332 3542.0 + 0 ENSG00000278622.4 protein_coding TSEN34 2 OTTHUMG00000151000.10 +2455 GL949746.1 HAVANA gene 191474 197887 2997.0 - 0 ENSG00000277816.5 protein_coding LILRB3 2 OTTHUMG00000151022.2 +2456 GL949746.1 HAVANA gene 203837 205014 1178.0 + 0 ENSG00000275116.1 processed_pseudogene CU457734.1 2 OTTHUMG00000152005.1 overlapping_locus +2457 GL949746.1 HAVANA gene 213259 217539 1909.0 - 0 ENSG00000275584.5 protein_coding LILRA6 2 OTTHUMG00000151192.3 +2458 GL949746.1 HAVANA gene 175608 223738 4650.0 + 0 ENSG00000274646.4 protein_coding RPS9 2 OTTHUMG00000150998.3 overlapping_locus +2459 GL949746.1 HAVANA gene 225148 232344 6181.0 - 0 ENSG00000277414.4 protein_coding LILRB5 2 OTTHUMG00000151020.3 +2460 GL949746.1 ENSEMBL gene 238690 238792 103.0 - 0 ENSG00000274323.1 snRNA RF00026 3 +2461 GL949746.1 HAVANA gene 242750 243783 1034.0 + 0 ENSG00000277366.1 processed_pseudogene CU457734.2 2 OTTHUMG00000152046.1 +2462 GL949746.1 HAVANA gene 248562 256056 4520.0 - 0 ENSG00000276146.4 protein_coding LILRB2 2 OTTHUMG00000151021.5 +2463 GL949746.1 HAVANA gene 268530 280828 2436.0 - 0 ENSG00000276175.4 protein_coding LILRA3 2 OTTHUMG00000151018.4 +2464 GL949746.1 HAVANA gene 288498 302003 2681.0 - 0 ENSG00000274914.4 protein_coding LILRA5 2 OTTHUMG00000152576.1 +2465 GL949746.1 HAVANA gene 337177 341222 529.0 - 0 ENSG00000278409.1 processed_transcript CU467002.1 2 OTTHUMG00000151302.1 +2466 GL949746.1 HAVANA gene 321737 343424 6900.0 + 0 ENSG00000276537.4 protein_coding TTYH1 2 OTTHUMG00000151301.3 +2467 GL949746.1 HAVANA gene 355231 368530 6445.0 + 0 ENSG00000276458.4 protein_coding LENG8 2 OTTHUMG00000151305.3 +2468 GL949746.1 HAVANA gene 368305 370225 1921.0 - 0 ENSG00000278312.1 protein_coding LENG9 2 OTTHUMG00000151308.1 +2469 GL949746.1 HAVANA gene 371539 379704 998.0 - 0 ENSG00000273633.1 protein_coding CDC42EP5 2 OTTHUMG00000151307.3 +2470 GL949746.1 HAVANA gene 404073 417309 1638.0 + 0 ENSG00000274084.4 protein_coding LAIR2 2 OTTHUMG00000151300.33 +2471 GL949746.1 HAVANA gene 438999 451967 4811.0 + 0 ENSG00000276848.4 protein_coding KIR3DX1 2 OTTHUMG00000151157.1 +2472 GL949746.1 HAVANA gene 479310 493950 2621.0 + 0 ENSG00000274000.4 protein_coding LILRA2 2 OTTHUMG00000151311.2 +2473 GL949746.1 HAVANA gene 499948 508771 4024.0 + 0 ENSG00000274935.5 protein_coding LILRA1 2 OTTHUMG00000151309.15 +2474 GL949746.1 HAVANA gene 523316 543942 4809.0 + 0 ENSG00000274669.5 protein_coding LILRB1 2 OTTHUMG00000151304.3 +2475 GL949746.1 HAVANA gene 550275 555984 1733.0 + 0 ENSG00000274101.2 transcribed_unprocessed_pseudogene CU234142.1 2 OTTHUMG00000151303.2 +2476 GL949746.1 HAVANA gene 568518 576762 5405.0 + 0 ENSG00000278555.4 protein_coding LILRB4 2 OTTHUMG00000151299.4 +2477 GL949746.1 HAVANA gene 602600 606822 1351.0 + 0 ENSG00000273740.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000151306.1 +2478 GL949746.1 HAVANA gene 613910 619024 2014.0 + 0 ENSG00000278795.4 transcribed_unprocessed_pseudogene LILRP2 2 OTTHUMG00000151310.2 +2479 GL949746.1 HAVANA gene 630167 642181 1691.0 + 0 ENSG00000278723.1 protein_coding KIR3DL3 2 OTTHUMG00000151150.1 +2480 GL949746.1 HAVANA gene 644160 658712 1590.0 + 0 ENSG00000274952.5 protein_coding KIR2DL3 2 OTTHUMG00000151600.1 +2481 GL949746.1 HAVANA gene 660683 673029 1331.0 + 0 ENSG00000277286.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000151598.1 +2482 GL949746.1 HAVANA gene 675469 689985 1712.0 + 0 ENSG00000278738.5 protein_coding KIR2DL1 2 OTTHUMG00000151599.1 +2483 GL949746.1 HAVANA gene 692014 695977 913.0 + 0 ENSG00000277477.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000152966.1 +2484 GL949746.1 ENSEMBL gene 809538 816477 1161.0 + 0 ENSG00000275822.4 protein_coding AC011476.9 3 +2485 GL949746.1 ENSEMBL gene 826907 850903 3421.0 - 0 ENSG00000277786.4 protein_coding NLRP7 3 +2486 GL949746.1 ENSEMBL gene 868682 904538 3667.0 + 0 ENSG00000275082.4 protein_coding NLRP2 3 +2487 GL949746.1 ENSEMBL gene 917103 941662 2268.0 - 0 ENSG00000276211.4 protein_coding GP6 3 +2488 GL949746.1 ENSEMBL gene 947722 966615 1931.0 - 0 ENSG00000278149.1 protein_coding RDH13 3 +2489 GL949747.2 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000275577.4 protein_coding VSTM1 3 +2490 GL949747.2 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000275384.1 protein_coding TARM1 3 +2491 GL949747.2 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000275644.4 protein_coding OSCAR 3 +2492 GL949747.2 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000276220.1 protein_coding AC012314.21 3 +2493 GL949747.2 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000276323.1 protein_coding AC012314.26 3 +2494 GL949747.2 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000275117.4 protein_coding AC012314.15 3 +2495 GL949747.2 ENSEMBL gene 112549 130558 4927.0 + 0 ENSG00000274176.4 protein_coding CNOT3 3 +2496 GL949747.2 ENSEMBL gene 130494 134559 886.0 - 0 ENSG00000276774.1 protein_coding LENG1 3 +2497 GL949747.2 ENSEMBL gene 135016 148058 2412.0 - 0 ENSG00000276260.1 protein_coding AC012314.22 3 +2498 GL949747.2 ENSEMBL gene 148221 164847 2598.0 - 0 ENSG00000278322.4 protein_coding MBOAT7 3 +2499 GL949747.2 ENSEMBL gene 165233 169508 2604.0 + 0 ENSG00000274796.4 protein_coding TSEN34 3 +2500 GL949747.2 ENSEMBL gene 175840 182627 724.0 + 0 ENSG00000274626.3 protein_coding AC012314.9 3 +2501 GL949747.2 HAVANA gene 268410 280719 2449.0 - 0 ENSG00000273884.4 protein_coding LILRA3 2 OTTHUMG00000152577.2 +2502 GL949747.2 HAVANA gene 288422 294485 1612.0 - 0 ENSG00000278355.4 protein_coding LILRA5 2 OTTHUMG00000151019.1 overlapping_locus +2503 GL949747.2 HAVANA gene 290261 320516 3145.0 - 0 ENSG00000276798.4 protein_coding LILRA4 2 OTTHUMG00000151162.2 overlapping_locus +2504 GL949747.2 HAVANA gene 335059 352046 4891.0 - 0 ENSG00000276163.4 protein_coding LAIR1 2 OTTHUMG00000151161.6 +2505 GL949747.2 HAVANA gene 400763 402184 862.0 + 0 ENSG00000275196.1 protein_coding KIR2DL1 2 OTTHUMG00000152967.1 +2506 GL949747.2 HAVANA gene 404212 415835 994.0 + 0 ENSG00000276912.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000151666.2 +2507 GL949747.2 HAVANA gene 421306 432382 1742.0 + 0 ENSG00000276979.5 protein_coding KIR2DL4 2 OTTHUMG00000151149.1 +2508 GL949747.2 HAVANA gene 434354 448830 1656.0 + 0 ENSG00000275434.5 protein_coding KIR3DS1 2 OTTHUMG00000151668.1 +2509 GL949747.2 HAVANA gene 450950 460291 1473.0 + 0 ENSG00000274143.1 protein_coding KIR2DL5A 2 OTTHUMG00000151665.1 +2510 GL949747.2 HAVANA gene 462371 477391 1601.0 + 0 ENSG00000274739.1 protein_coding KIR2DS5 2 OTTHUMG00000151669.1 +2511 GL949747.2 HAVANA gene 479360 493288 1015.0 + 0 ENSG00000278120.1 protein_coding KIR2DS1 2 OTTHUMG00000151667.1 +2512 GL949747.2 HAVANA gene 495695 512489 1885.0 + 0 ENSG00000278707.4 protein_coding KIR3DL2 2 OTTHUMG00000151151.1 +2513 GL949747.2 ENSEMBL gene 514213 514319 107.0 - 0 ENSG00000275304.1 snRNA RF00026 3 +2514 GL949747.2 HAVANA gene 519503 536649 3344.0 + 0 ENSG00000278415.4 protein_coding FCAR 2 OTTHUMG00000151152.3 +2515 GL949747.2 HAVANA gene 551333 561328 1893.0 + 0 ENSG00000278362.4 protein_coding NCR1 2 OTTHUMG00000153345.2 +2516 GL949747.2 HAVANA gene 568712 592707 3421.0 - 0 ENSG00000274174.4 protein_coding NLRP7 2 OTTHUMG00000153344.1 +2517 GL949747.2 ENSEMBL gene 610486 646342 3667.0 + 0 ENSG00000275796.4 protein_coding NLRP2 3 +2518 GL949747.2 ENSEMBL gene 658907 683466 2268.0 - 0 ENSG00000275633.4 protein_coding GP6 3 +2519 GL949747.2 ENSEMBL gene 689526 708419 1931.0 - 0 ENSG00000276826.1 protein_coding RDH13 3 +2520 GL949748.2 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000276066.4 protein_coding VSTM1 3 +2521 GL949748.2 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000277178.1 protein_coding TARM1 3 +2522 GL949748.2 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000278533.4 protein_coding OSCAR 3 +2523 GL949748.2 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000276766.1 protein_coding AC012314.28 3 +2524 GL949748.2 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000276263.1 protein_coding AC012314.23 3 +2525 GL949748.2 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000274651.4 protein_coding AC012314.10 3 +2526 GL949748.2 ENSEMBL gene 112549 130558 4927.0 + 0 ENSG00000274941.4 protein_coding CNOT3 3 +2527 GL949748.2 ENSEMBL gene 130494 134559 886.0 - 0 ENSG00000276628.1 protein_coding LENG1 3 +2528 GL949748.2 ENSEMBL gene 135016 148058 2412.0 - 0 ENSG00000274905.1 protein_coding AC012314.13 3 +2529 GL949748.2 ENSEMBL gene 148221 164847 2598.0 - 0 ENSG00000278519.4 protein_coding MBOAT7 3 +2530 GL949748.2 ENSEMBL gene 165233 169508 2604.0 + 0 ENSG00000274078.4 protein_coding TSEN34 3 +2531 GL949748.2 ENSEMBL gene 175840 182627 724.0 + 0 ENSG00000277359.3 protein_coding AC012314.31 3 +2532 GL949748.2 HAVANA gene 721171 735540 1630.0 + 0 ENSG00000275583.5 protein_coding CU464060.1 2 OTTHUMG00000151577.2 +2533 GL949748.2 HAVANA gene 737428 751952 1572.0 + 0 ENSG00000274412.5 protein_coding KIR2DL2 2 OTTHUMG00000151579.1 +2534 GL949748.2 HAVANA gene 753983 759419 948.0 + 0 ENSG00000274498.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000151576.1 +2535 GL949748.2 HAVANA gene 737442 828448 2417.0 + 0 ENSG00000274921.2 protein_coding KIR2DS4 2 OTTHUMG00000151578.3 +2536 GL949748.2 HAVANA gene 830291 839007 1063.0 + 0 ENSG00000273911.1 protein_coding KIR3DL2 2 OTTHUMG00000151580.2 +2537 GL949748.2 ENSEMBL gene 886126 893065 1161.0 + 0 ENSG00000273506.4 protein_coding AC011476.4 3 +2538 GL949748.2 ENSEMBL gene 903495 927491 3421.0 - 0 ENSG00000277179.4 protein_coding NLRP7 3 +2539 GL949748.2 ENSEMBL gene 945270 981126 3667.0 + 0 ENSG00000274638.4 protein_coding NLRP2 3 +2540 GL949748.2 ENSEMBL gene 993691 1018250 2268.0 - 0 ENSG00000278670.4 protein_coding GP6 3 +2541 GL949748.2 ENSEMBL gene 1024310 1043203 1931.0 - 0 ENSG00000276341.1 protein_coding RDH13 3 +2542 GL949749.2 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000276363.4 protein_coding VSTM1 3 +2543 GL949749.2 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000276145.1 protein_coding TARM1 3 +2544 GL949749.2 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000276982.4 protein_coding OSCAR 3 +2545 GL949749.2 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000273642.1 protein_coding AC012314.1 3 +2546 GL949749.2 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000275086.1 protein_coding AC012314.14 3 +2547 GL949749.2 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000274894.4 protein_coding AC012314.12 3 +2548 GL949749.2 ENSEMBL gene 112549 130558 4927.0 + 0 ENSG00000276082.4 protein_coding CNOT3 3 +2549 GL949749.2 ENSEMBL gene 130494 134559 886.0 - 0 ENSG00000275935.1 protein_coding LENG1 3 +2550 GL949749.2 ENSEMBL gene 135016 148058 2412.0 - 0 ENSG00000274873.1 protein_coding AC012314.11 3 +2551 GL949749.2 ENSEMBL gene 148221 164847 2598.0 - 0 ENSG00000277025.4 protein_coding MBOAT7 3 +2552 GL949749.2 ENSEMBL gene 165233 169508 2604.0 + 0 ENSG00000274672.4 protein_coding TSEN34 3 +2553 GL949749.2 ENSEMBL gene 175840 182627 724.0 + 0 ENSG00000275323.3 protein_coding AC012314.16 3 +2554 GL949749.2 HAVANA gene 813264 825281 1691.0 + 0 ENSG00000276875.1 protein_coding KIR3DL3 2 OTTHUMG00000151525.2 +2555 GL949749.2 HAVANA gene 827254 839993 1596.0 + 0 ENSG00000276468.5 protein_coding KIR2DP1 2 OTTHUMG00000151524.1 +2556 GL949749.2 HAVANA gene 841921 856414 1689.0 + 0 ENSG00000275921.5 protein_coding CU633846.1 2 OTTHUMG00000152573.1 +2557 GL949749.2 HAVANA gene 858278 860146 398.0 + 0 ENSG00000277709.1 protein_coding KIR3DL2 2 OTTHUMG00000152572.2 +2558 GL949749.2 ENSEMBL gene 913663 920602 1161.0 + 0 ENSG00000277629.4 protein_coding AC011476.10 3 +2559 GL949749.2 ENSEMBL gene 931032 955028 3421.0 - 0 ENSG00000276804.4 protein_coding NLRP7 3 +2560 GL949749.2 ENSEMBL gene 972807 1008663 3667.0 + 0 ENSG00000275843.4 protein_coding NLRP2 3 +2561 GL949749.2 ENSEMBL gene 1021228 1045787 2268.0 - 0 ENSG00000276065.4 protein_coding GP6 3 +2562 GL949749.2 ENSEMBL gene 1051847 1070740 1931.0 - 0 ENSG00000273944.1 protein_coding RDH13 3 +2563 GL949750.2 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000276159.4 protein_coding VSTM1 3 +2564 GL949750.2 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000274889.1 protein_coding TARM1 3 +2565 GL949750.2 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000274703.4 protein_coding OSCAR 3 +2566 GL949750.2 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000278365.1 protein_coding AC012314.40 3 +2567 GL949750.2 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000276296.1 protein_coding AC012314.25 3 +2568 GL949750.2 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000276421.4 protein_coding AC012314.27 3 +2569 GL949750.2 ENSEMBL gene 112549 130558 4927.0 + 0 ENSG00000275979.4 protein_coding CNOT3 3 +2570 GL949750.2 ENSEMBL gene 130494 134559 886.0 - 0 ENSG00000277457.1 protein_coding LENG1 3 +2571 GL949750.2 ENSEMBL gene 135016 148058 2412.0 - 0 ENSG00000277996.1 protein_coding AC012314.36 3 +2572 GL949750.2 ENSEMBL gene 148221 164847 2598.0 - 0 ENSG00000277733.4 protein_coding MBOAT7 3 +2573 GL949750.2 ENSEMBL gene 165233 169508 2604.0 + 0 ENSG00000275165.4 protein_coding TSEN34 3 +2574 GL949750.2 ENSEMBL gene 175840 182627 724.0 + 0 ENSG00000278081.3 protein_coding AC012314.37 3 +2575 GL949750.2 HAVANA gene 819633 830491 1315.0 + 0 ENSG00000274533.1 protein_coding KIR2DS4 2 OTTHUMG00000151033.1 +2576 GL949750.2 HAVANA gene 832361 849155 1885.0 + 0 ENSG00000276739.4 protein_coding KIR3DL2 2 OTTHUMG00000151034.1 +2577 GL949750.2 ENSEMBL gene 850879 850985 107.0 - 0 ENSG00000278296.1 snRNA RF00026 3 +2578 GL949750.2 ENSEMBL gene 888212 895151 1161.0 + 0 ENSG00000277824.4 protein_coding AC011476.11 3 +2579 GL949750.2 ENSEMBL gene 905581 929577 3421.0 - 0 ENSG00000277776.4 protein_coding NLRP7 3 +2580 GL949750.2 ENSEMBL gene 947356 983212 3667.0 + 0 ENSG00000275399.4 protein_coding NLRP2 3 +2581 GL949750.2 ENSEMBL gene 995777 1020336 2268.0 - 0 ENSG00000274566.4 protein_coding GP6 3 +2582 GL949750.2 ENSEMBL gene 1026396 1045289 1931.0 - 0 ENSG00000275474.1 protein_coding RDH13 3 +2583 GL949751.2 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000274953.4 protein_coding VSTM1 3 +2584 GL949751.2 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000275123.1 protein_coding TARM1 3 +2585 GL949751.2 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000275551.4 protein_coding OSCAR 3 +2586 GL949751.2 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000275724.1 protein_coding AC012314.18 3 +2587 GL949751.2 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000273833.1 protein_coding AC012314.3 3 +2588 GL949751.2 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000277953.4 protein_coding AC012314.35 3 +2589 GL949751.2 ENSEMBL gene 112549 130558 4927.0 + 0 ENSG00000273943.4 protein_coding CNOT3 3 +2590 GL949751.2 ENSEMBL gene 130494 134559 886.0 - 0 ENSG00000278426.1 protein_coding LENG1 3 +2591 GL949751.2 ENSEMBL gene 135016 148058 2412.0 - 0 ENSG00000277667.1 protein_coding AC012314.32 3 +2592 GL949751.2 ENSEMBL gene 148221 164847 2598.0 - 0 ENSG00000277923.4 protein_coding MBOAT7 3 +2593 GL949751.2 ENSEMBL gene 165233 169508 2604.0 + 0 ENSG00000273896.4 protein_coding TSEN34 3 +2594 GL949751.2 ENSEMBL gene 175840 182627 724.0 + 0 ENSG00000274005.3 protein_coding AC012314.4 3 +2595 GL949751.2 HAVANA gene 707375 718934 1233.0 + 0 ENSG00000276572.1 protein_coding KIR3DL3 2 OTTHUMG00000151076.2 +2596 GL949751.2 HAVANA gene 721344 735888 1706.0 + 0 ENSG00000275658.5 protein_coding KIR2DL3 2 OTTHUMG00000151058.1 +2597 GL949751.2 HAVANA gene 737859 750207 1053.0 + 0 ENSG00000273753.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000151060.1 +2598 GL949751.2 HAVANA gene 752644 766945 1497.0 + 0 ENSG00000276387.4 protein_coding KIR2DS1 2 OTTHUMG00000151075.2 +2599 GL949751.2 HAVANA gene 768981 785805 1915.0 + 0 ENSG00000275838.5 protein_coding KIR3DL2 2 OTTHUMG00000151059.1 +2600 GL949751.2 ENSEMBL gene 787529 787635 107.0 - 0 ENSG00000273519.1 snRNA RF00026 3 +2601 GL949751.2 ENSEMBL gene 824505 831444 1161.0 + 0 ENSG00000273916.4 protein_coding AC011476.5 3 +2602 GL949751.2 ENSEMBL gene 841874 865870 3421.0 - 0 ENSG00000277071.4 protein_coding NLRP7 3 +2603 GL949751.2 ENSEMBL gene 883649 919505 3667.0 + 0 ENSG00000278789.4 protein_coding NLRP2 3 +2604 GL949751.2 ENSEMBL gene 932070 956629 2268.0 - 0 ENSG00000274050.4 protein_coding GP6 3 +2605 GL949751.2 ENSEMBL gene 962689 981582 1931.0 - 0 ENSG00000274504.1 protein_coding RDH13 3 +2606 GL949752.1 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000274887.4 protein_coding VSTM1 3 +2607 GL949752.1 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000275806.1 protein_coding TARM1 3 +2608 GL949752.1 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000277088.4 protein_coding OSCAR 3 +2609 GL949752.1 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000275605.1 protein_coding AC012314.17 3 +2610 GL949752.1 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000278161.1 protein_coding AC012314.38 3 +2611 GL949752.1 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000277707.4 protein_coding AC012314.33 3 +2612 GL949752.1 HAVANA gene 112549 130558 6476.0 + 0 ENSG00000274616.4 protein_coding CNOT3 2 OTTHUMG00000149824.2 +2613 GL949752.1 HAVANA gene 130474 134594 941.0 - 0 ENSG00000278516.1 protein_coding LENG1 2 OTTHUMG00000149859.1 +2614 GL949752.1 HAVANA gene 134959 148028 4434.0 - 0 ENSG00000274384.4 protein_coding TMC4 2 OTTHUMG00000149858.2 +2615 GL949752.1 HAVANA gene 148191 164846 5304.0 - 0 ENSG00000273592.4 protein_coding MBOAT7 2 OTTHUMG00000149862.3 +2616 GL949752.1 HAVANA gene 164902 169499 3546.0 + 0 ENSG00000274129.4 protein_coding TSEN34 2 OTTHUMG00000149860.3 +2617 GL949752.1 HAVANA gene 191660 198156 3076.0 - 0 ENSG00000275019.5 protein_coding LILRB3 2 OTTHUMG00000149828.2 +2618 GL949752.1 HAVANA gene 203972 205346 1375.0 + 0 ENSG00000276720.1 processed_pseudogene CU151838.1 2 OTTHUMG00000149857.1 overlapping_locus +2619 GL949752.1 HAVANA gene 213475 217824 1816.0 - 0 ENSG00000275539.5 protein_coding LILRA6 2 OTTHUMG00000149861.4 +2620 GL949752.1 HAVANA gene 175791 223971 4640.0 + 0 ENSG00000274950.4 protein_coding RPS9 2 OTTHUMG00000149856.2 overlapping_locus +2621 GL949752.1 HAVANA gene 225393 232577 6147.0 - 0 ENSG00000273991.4 protein_coding LILRB5 2 OTTHUMG00000152677.2 +2622 GL949752.1 ENSEMBL gene 238933 239035 103.0 - 0 ENSG00000275889.1 snRNA RF00026 3 +2623 GL949752.1 HAVANA gene 242986 244029 1044.0 + 0 ENSG00000278137.1 processed_pseudogene CU151838.2 2 OTTHUMG00000149855.1 +2624 GL949752.1 HAVANA gene 248805 253362 2545.0 - 0 ENSG00000277751.4 protein_coding LILRB2 2 OTTHUMG00000152660.1 +2625 GL949752.1 HAVANA gene 258363 275291 4807.0 - 0 ENSG00000274110.4 protein_coding LAIR1 2 OTTHUMG00000140345.6 +2626 GL949752.1 HAVANA gene 335340 339386 529.0 - 0 ENSG00000278827.1 processed_transcript CU207370.1 2 OTTHUMG00000152705.1 +2627 GL949752.1 HAVANA gene 319913 341588 6911.0 + 0 ENSG00000276887.4 protein_coding TTYH1 2 OTTHUMG00000152327.4 +2628 GL949752.1 HAVANA gene 353405 366704 6446.0 + 0 ENSG00000274305.4 protein_coding LENG8 2 OTTHUMG00000152706.2 +2629 GL949752.1 HAVANA gene 366479 368402 1924.0 - 0 ENSG00000274495.1 protein_coding LENG9 2 OTTHUMG00000152708.1 +2630 GL949752.1 HAVANA gene 369718 377945 998.0 - 0 ENSG00000273622.1 protein_coding CDC42EP5 2 OTTHUMG00000152707.3 +2631 GL949752.1 HAVANA gene 402599 415826 1638.0 + 0 ENSG00000275819.4 protein_coding LAIR2 2 OTTHUMG00000140134.3 +2632 GL949752.1 HAVANA gene 437516 450485 4811.0 + 0 ENSG00000276033.4 protein_coding KIR3DX1 2 OTTHUMG00000140133.4 +2633 GL949752.1 HAVANA gene 477804 492444 2622.0 + 0 ENSG00000278634.4 protein_coding LILRA2 2 OTTHUMG00000140138.3 +2634 GL949752.1 HAVANA gene 498460 507265 4006.0 + 0 ENSG00000277398.5 protein_coding LILRA1 2 OTTHUMG00000140209.3 +2635 GL949752.1 HAVANA gene 522048 542447 4554.0 + 0 ENSG00000277807.5 protein_coding LILRB1 2 OTTHUMG00000140208.4 +2636 GL949752.1 HAVANA gene 548768 554479 1740.0 + 0 ENSG00000278031.2 transcribed_unprocessed_pseudogene CU024913.1 2 OTTHUMG00000140211.2 +2637 GL949752.1 HAVANA gene 567009 574618 4843.0 + 0 ENSG00000276042.4 protein_coding LILRB4 2 OTTHUMG00000140210.6 +2638 GL949752.1 HAVANA gene 601233 605586 1466.0 + 0 ENSG00000276447.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000140230.1 +2639 GL949752.1 HAVANA gene 612541 617730 2051.0 + 0 ENSG00000276976.4 transcribed_unprocessed_pseudogene LILRP2 2 OTTHUMG00000140228.2 +2640 GL949752.1 HAVANA gene 628873 640888 1691.0 + 0 ENSG00000278729.1 protein_coding KIR3DL3 2 OTTHUMG00000140227.2 +2641 GL949752.1 HAVANA gene 642858 657386 1596.0 + 0 ENSG00000277924.5 protein_coding KIR2DL3 2 OTTHUMG00000140229.1 +2642 GL949752.1 HAVANA gene 659357 671734 1078.0 + 0 ENSG00000278169.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000140226.1 +2643 GL949752.1 HAVANA gene 674142 688600 1652.0 + 0 ENSG00000274926.1 protein_coding KIR2DL1 2 OTTHUMG00000140232.1 +2644 GL949752.1 HAVANA gene 690689 694652 913.0 + 0 ENSG00000273880.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000140231.3 +2645 GL949752.1 HAVANA gene 707933 718882 1581.0 + 0 ENSG00000274609.1 protein_coding KIR2DL4 2 OTTHUMG00000149819.1 +2646 GL949752.1 HAVANA gene 720829 735146 1875.0 + 0 ENSG00000275545.5 protein_coding KIR3DL1 2 OTTHUMG00000149823.1 +2647 GL949752.1 HAVANA gene 737079 752960 1596.0 + 0 ENSG00000276634.1 protein_coding KIR2DS4 2 OTTHUMG00000149820.1 +2648 GL949752.1 HAVANA gene 754833 771590 1885.0 + 0 ENSG00000275566.4 protein_coding KIR3DL2 2 OTTHUMG00000149826.1 +2649 GL949752.1 ENSEMBL gene 773314 773420 107.0 - 0 ENSG00000276339.1 snRNA RF00026 3 +2650 GL949752.1 HAVANA gene 778610 795778 3337.0 + 0 ENSG00000275564.4 protein_coding FCAR 2 OTTHUMG00000149827.2 +2651 GL949752.1 HAVANA gene 810507 820490 1893.0 + 0 ENSG00000273535.4 protein_coding NCR1 2 OTTHUMG00000149825.3 +2652 GL949752.1 HAVANA gene 827859 851863 3421.0 - 0 ENSG00000278173.4 protein_coding NLRP7 2 OTTHUMG00000149821.1 +2653 GL949752.1 HAVANA gene 869084 903922 3875.0 + 0 ENSG00000277060.4 protein_coding NLRP2 2 OTTHUMG00000149822.3 +2654 GL949752.1 ENSEMBL gene 916487 941046 2268.0 - 0 ENSG00000278316.4 protein_coding GP6 3 +2655 GL949752.1 ENSEMBL gene 947106 965999 1931.0 - 0 ENSG00000274418.1 protein_coding RDH13 3 +2656 GL949753.2 ENSEMBL gene 15200 38320 1144.0 - 0 ENSG00000277607.4 protein_coding VSTM1 3 +2657 GL949753.2 ENSEMBL gene 44314 55747 897.0 - 0 ENSG00000273875.1 protein_coding TARM1 3 +2658 GL949753.2 ENSEMBL gene 69048 77107 2076.0 - 0 ENSG00000278378.4 protein_coding OSCAR 3 +2659 GL949753.2 ENSEMBL gene 77273 81393 353.0 + 0 ENSG00000277722.1 protein_coding AC012314.34 3 +2660 GL949753.2 ENSEMBL gene 81433 90168 1205.0 - 0 ENSG00000276022.1 protein_coding AC012314.19 3 +2661 GL949753.2 ENSEMBL gene 89903 106263 2269.0 + 0 ENSG00000274144.4 protein_coding AC012314.7 3 +2662 GL949753.2 ENSEMBL gene 112549 130558 4927.0 + 0 ENSG00000277615.4 protein_coding CNOT3 3 +2663 GL949753.2 ENSEMBL gene 130494 134559 886.0 - 0 ENSG00000278257.1 protein_coding LENG1 3 +2664 GL949753.2 ENSEMBL gene 135016 148058 2412.0 - 0 ENSG00000278363.1 protein_coding AC012314.39 3 +2665 GL949753.2 ENSEMBL gene 148221 164847 2598.0 - 0 ENSG00000274194.4 protein_coding MBOAT7 3 +2666 GL949753.2 ENSEMBL gene 165233 169508 2604.0 + 0 ENSG00000278712.4 protein_coding TSEN34 3 +2667 GL949753.2 ENSEMBL gene 175840 182627 724.0 + 0 ENSG00000277079.3 protein_coding AC012314.29 3 +2668 GL949753.2 HAVANA gene 191261 217850 3774.0 - 0 ENSG00000277177.4 protein_coding LILRA6 2 OTTHUMG00000152661.2 +2669 GL949753.2 HAVANA gene 225413 232612 6174.0 - 0 ENSG00000274311.4 protein_coding LILRB5 2 OTTHUMG00000140360.5 +2670 GL949753.2 ENSEMBL gene 238945 239047 103.0 - 0 ENSG00000275752.1 snRNA RF00026 3 +2671 GL949753.2 HAVANA gene 243006 244036 1031.0 + 0 ENSG00000273726.1 processed_pseudogene CU104682.1 2 OTTHUMG00000152662.1 +2672 GL949753.2 HAVANA gene 248817 256311 4500.0 - 0 ENSG00000274513.4 protein_coding LILRB2 2 OTTHUMG00000140361.6 +2673 GL949753.2 HAVANA gene 268785 281093 2445.0 - 0 ENSG00000278046.4 protein_coding LILRA3 2 OTTHUMG00000140348.3 +2674 GL949753.2 HAVANA gene 288603 294640 1612.0 - 0 ENSG00000275404.4 protein_coding LILRA5 2 OTTHUMG00000140346.2 overlapping_locus +2675 GL949753.2 HAVANA gene 290416 320659 3134.0 - 0 ENSG00000274185.4 protein_coding LILRA4 2 OTTHUMG00000140347.2 overlapping_locus +2676 GL949753.2 HAVANA gene 335587 352601 4880.0 - 0 ENSG00000278154.4 protein_coding LAIR1 2 OTTHUMG00000152599.1 +2677 GL949753.2 HAVANA gene 363079 364052 895.0 + 0 ENSG00000276452.4 protein_coding LILRB1 2 OTTHUMG00000153073.2 +2678 GL949753.2 HAVANA gene 370373 376084 1733.0 + 0 ENSG00000276906.2 transcribed_unprocessed_pseudogene CU467612.1 2 OTTHUMG00000153074.2 +2679 GL949753.2 HAVANA gene 388618 396863 5405.0 + 0 ENSG00000278279.4 protein_coding LILRB4 2 OTTHUMG00000153072.1 +2680 GL949753.2 HAVANA gene 422713 427303 1486.0 + 0 ENSG00000276526.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000153076.1 +2681 GL949753.2 HAVANA gene 434258 439402 2014.0 + 0 ENSG00000275462.4 transcribed_unprocessed_pseudogene LILRP2 2 OTTHUMG00000153075.1 +2682 GL949753.2 HAVANA gene 450545 462563 1694.0 + 0 ENSG00000274511.5 protein_coding KIR3DL3 2 OTTHUMG00000152907.1 +2683 GL949753.2 HAVANA gene 450563 495276 1991.0 + 0 ENSG00000278300.4 protein_coding KIR2DS2 2 OTTHUMG00000152906.1 +2684 GL949753.2 HAVANA gene 450525 495281 1682.0 + 0 ENSG00000275960.4 protein_coding KIR2DL2 2 OTTHUMG00000152912.1 +2685 GL949753.2 HAVANA gene 497309 502746 950.0 + 0 ENSG00000278157.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000152914.1 +2686 GL949753.2 ENSEMBL gene 618301 625240 1161.0 + 0 ENSG00000274053.4 protein_coding AC011476.6 3 +2687 GL949753.2 ENSEMBL gene 635670 659666 3421.0 - 0 ENSG00000275483.4 protein_coding NLRP7 3 +2688 GL949753.2 ENSEMBL gene 677445 713301 3667.0 + 0 ENSG00000278682.4 protein_coding NLRP2 3 +2689 GL949753.2 ENSEMBL gene 725866 750425 2268.0 - 0 ENSG00000275931.4 protein_coding GP6 3 +2690 GL949753.2 ENSEMBL gene 756485 775378 1931.0 - 0 ENSG00000278284.1 protein_coding RDH13 3 +2691 JH159136.1 HAVANA gene 15874 16374 501.0 - 0 ENSG00000281819.1 processed_pseudogene AC022882.2 2 OTTHUMG00000189918.1 +2692 JH159136.1 HAVANA gene 21622 22569 948.0 - 0 ENSG00000263150.3 polymorphic_pseudogene OR8J2 2 OTTHUMG00000189919.2 +2693 JH159136.1 HAVANA gene 42855 43934 1080.0 - 0 ENSG00000262851.2 protein_coding OR5T2 2 OTTHUMG00000189920.2 +2694 JH159136.1 HAVANA gene 62949 63971 1023.0 + 0 ENSG00000261897.1 protein_coding OR5T3 2 OTTHUMG00000189921.2 +2695 JH159136.1 HAVANA gene 86388 87368 981.0 + 0 ENSG00000262784.2 protein_coding OR5T1 2 OTTHUMG00000189922.2 +2696 JH159136.1 HAVANA gene 100802 101839 1038.0 - 0 ENSG00000262611.4 protein_coding OR8H1 2 OTTHUMG00000189923.1 +2697 JH159136.1 HAVANA gene 107290 108220 931.0 - 0 ENSG00000280712.1 unprocessed_pseudogene OR8I1P 2 OTTHUMG00000189924.1 +2698 JH159136.1 HAVANA gene 129056 129994 939.0 + 0 ENSG00000262755.1 polymorphic_pseudogene OR8K3 2 OTTHUMG00000189925.2 +2699 JH159136.1 HAVANA gene 142096 143237 1142.0 - 0 ENSG00000281773.1 unprocessed_pseudogene FAM8A2P 2 OTTHUMG00000189926.1 +2700 JH159136.1 HAVANA gene 145891 146817 927.0 + 0 ENSG00000280617.1 unprocessed_pseudogene OR8K2P 2 OTTHUMG00000189927.1 +2701 JH159136.1 HAVANA gene 156788 157747 960.0 + 0 ENSG00000263328.2 protein_coding OR8K1 2 OTTHUMG00000189928.2 +2702 JH159136.1 HAVANA gene 168077 168970 894.0 + 0 ENSG00000281820.1 processed_pseudogene RPL5P29 2 OTTHUMG00000189929.1 +2703 JH159136.1 HAVANA gene 170964 172037 1074.0 + 0 ENSG00000262796.1 protein_coding OR8J1 2 OTTHUMG00000189930.1 +2704 JH159136.1 HAVANA gene 186374 187333 960.0 + 0 ENSG00000262315.4 protein_coding OR8U8 2 OTTHUMG00000189938.2 +2705 JH159136.1 HAVANA gene 193979 194908 930.0 + 0 ENSG00000281038.1 protein_coding OR8U9 2 OTTHUMG00000189931.2 +2706 JH159136.1 HAVANA gene 199990 200944 955.0 + 0 ENSG00000280577.1 unprocessed_pseudogene OR8L1P 2 OTTHUMG00000189932.1 +2707 JH159137.1 HAVANA gene 7154 8071 918.0 + 0 ENSG00000261958.1 protein_coding OR9G1 2 OTTHUMG00000189960.2 +2708 JH159137.1 HAVANA gene 18234 19151 918.0 + 0 ENSG00000262191.1 protein_coding OR9G9 2 OTTHUMG00000190013.2 +2709 JH159137.1 HAVANA gene 54158 54304 147.0 - 0 ENSG00000281683.1 processed_pseudogene AP001803.3 2 OTTHUMG00000189961.1 +2710 JH159137.1 HAVANA gene 58021 58938 918.0 + 0 ENSG00000262268.3 unprocessed_pseudogene OR9G3P 2 OTTHUMG00000189962.1 +2711 JH159137.1 HAVANA gene 60669 61653 985.0 - 0 ENSG00000262647.3 protein_coding OR9G4 2 OTTHUMG00000189963.1 +2712 JH159137.1 HAVANA gene 68865 69744 880.0 - 0 ENSG00000281777.1 unprocessed_pseudogene OR9G2P 2 OTTHUMG00000189964.1 +2713 JH159137.1 HAVANA gene 93103 94048 946.0 - 0 ENSG00000281313.1 unprocessed_pseudogene OR5G1P 2 OTTHUMG00000189965.1 +2714 JH159137.1 HAVANA gene 108048 108807 760.0 - 0 ENSG00000281279.1 unprocessed_pseudogene OR5G4P 2 OTTHUMG00000189966.1 +2715 JH159137.1 HAVANA gene 119698 138264 1403.0 - 0 ENSG00000262535.5 transcribed_unprocessed_pseudogene OR5G5P 2 OTTHUMG00000189967.2 overlapping_locus +2716 JH159137.1 HAVANA gene 137423 138358 936.0 - 0 ENSG00000281107.1 polymorphic_pseudogene OR5G3 2 OTTHUMG00000189968.3 overlapping_locus +2717 JH159137.1 HAVANA gene 166410 189093 209.0 + 0 ENSG00000281839.1 lincRNA AP001803.4 2 OTTHUMG00000189969.1 +2718 JH159146.1 HAVANA gene 68 12550 258.0 + 0 ENSG00000264450.1 antisense AC004231.2 2 OTTHUMG00000181697.1 +2719 JH159146.1 HAVANA gene 10571 16478 1867.0 - 0 ENSG00000263243.2 protein_coding KRT12 2 OTTHUMG00000181698.1 +2720 JH159146.1 HAVANA gene 25209 34495 1846.0 - 0 ENSG00000263057.2 protein_coding KRT20 2 OTTHUMG00000181699.1 +2721 JH159146.1 HAVANA gene 71964 86902 2902.0 - 0 ENSG00000263309.6 protein_coding KRT23 2 OTTHUMG00000181701.3 +2722 JH159146.1 HAVANA gene 107812 116287 1936.0 - 0 ENSG00000262164.6 protein_coding KRT39 2 OTTHUMG00000181702.1 +2723 JH159146.1 HAVANA gene 70698 125321 815.0 + 0 ENSG00000262487.1 antisense AC037482.1 2 OTTHUMG00000181700.1 +2724 JH159146.1 HAVANA gene 127111 136530 2225.0 - 0 ENSG00000262845.7 protein_coding KRT40 2 OTTHUMG00000181703.1 +2725 JH159146.1 HAVANA gene 142825 143528 704.0 - 0 ENSG00000263101.2 protein_coding KRTAP3-3 2 OTTHUMG00000181704.1 +2726 JH159146.1 HAVANA gene 148588 149289 702.0 - 0 ENSG00000263296.2 protein_coding KRTAP3-2 2 OTTHUMG00000181705.1 +2727 JH159146.1 HAVANA gene 153876 154155 280.0 - 0 ENSG00000262616.1 unprocessed_pseudogene KRTAP3-4P 2 OTTHUMG00000181706.1 +2728 JH159146.1 HAVANA gene 157916 168719 725.0 - 0 ENSG00000262068.3 protein_coding KRTAP3-1 2 OTTHUMG00000181707.1 +2729 JH159146.1 HAVANA gene 175421 176597 1177.0 - 0 ENSG00000261862.2 protein_coding KRTAP1-5 2 OTTHUMG00000181708.1 +2730 JH159146.1 HAVANA gene 179092 179499 408.0 - 0 ENSG00000263242.2 protein_coding KRTAP1-4 2 OTTHUMG00000181709.1 +2731 JH159146.1 HAVANA gene 183279 184250 972.0 - 0 ENSG00000262347.2 protein_coding KRTAP1-3 2 OTTHUMG00000181710.1 +2732 JH159146.1 HAVANA gene 189952 190854 903.0 - 0 ENSG00000262808.2 protein_coding KRTAP1-1 2 OTTHUMG00000181711.1 +2733 JH159146.1 HAVANA gene 195934 196709 776.0 - 0 ENSG00000261852.3 protein_coding KRTAP2-1 2 OTTHUMG00000181712.1 +2734 JH159146.1 HAVANA gene 203891 204757 867.0 - 0 ENSG00000262731.3 protein_coding AC037482.2 2 OTTHUMG00000182265.1 +2735 JH159146.1 HAVANA gene 208738 209612 875.0 - 0 ENSG00000262862.2 protein_coding KRTAP2-3 2 OTTHUMG00000181713.1 +2736 JH159146.1 HAVANA gene 214614 215377 764.0 - 0 ENSG00000263091.2 protein_coding KRTAP2-4 2 OTTHUMG00000181714.1 +2737 JH159146.1 HAVANA gene 221446 221841 396.0 + 0 ENSG00000262376.1 unprocessed_pseudogene KRTAP2-5P 2 OTTHUMG00000181715.1 +2738 JH159146.1 HAVANA gene 233654 234810 1157.0 + 0 ENSG00000266286.2 protein_coding AC037482.3 2 OTTHUMG00000182266.1 +2739 JH159146.1 HAVANA gene 246639 247812 1174.0 - 0 ENSG00000261968.3 protein_coding KRTAP4-8 2 OTTHUMG00000182267.2 +2740 JH159146.1 HAVANA gene 251189 251896 708.0 - 0 ENSG00000262520.1 protein_coding KRTAP4-16 2 OTTHUMG00000181716.2 +2741 JH159146.1 HAVANA gene 255019 256175 1157.0 + 0 ENSG00000262121.2 protein_coding KRTAP4-9 2 OTTHUMG00000181717.1 +2742 JH159146.1 HAVANA gene 266931 268110 1180.0 - 0 ENSG00000263229.4 protein_coding KRTAP4-11 2 OTTHUMG00000181718.1 +2743 JH159146.1 HAVANA gene 272827 273903 1077.0 - 0 ENSG00000263236.2 protein_coding KRTAP4-12 2 OTTHUMG00000181719.1 +2744 JH159147.1 HAVANA gene 4259 5284 1026.0 + 0 ENSG00000262218.1 protein_coding KRTAP29-1 2 OTTHUMG00000181724.2 +2745 JH159147.1 HAVANA gene 26300 26506 207.0 - 0 ENSG00000263103.1 unprocessed_pseudogene KRTAP9-10P 2 OTTHUMG00000181723.1 +2746 JH159147.1 HAVANA gene 30906 31430 525.0 - 0 ENSG00000267635.1 protein_coding AC209539.2 2 OTTHUMG00000182263.2 +2747 JH159147.1 HAVANA gene 40477 41469 993.0 - 0 ENSG00000267728.3 protein_coding KRTAP9-9 2 OTTHUMG00000182262.1 +2748 JH159147.1 HAVANA gene 46203 47169 967.0 - 0 ENSG00000262512.2 protein_coding KRTAP9-4 2 OTTHUMG00000181722.1 +2749 JH159147.1 HAVANA gene 58323 58787 465.0 - 0 ENSG00000267208.1 unprocessed_pseudogene AC209539.1 2 OTTHUMG00000182261.1 +2750 JH159147.1 HAVANA gene 63335 64326 992.0 - 0 ENSG00000262749.2 protein_coding KRTAP9-3 2 OTTHUMG00000181721.1 +2751 JH159147.1 HAVANA gene 69136 70140 1005.0 - 0 ENSG00000263090.5 protein_coding KRTAP9-2 2 OTTHUMG00000181720.1 +2752 JH159148.1 HAVANA gene 4259 5284 1026.0 + 0 ENSG00000262542.1 protein_coding KRTAP29-1 2 OTTHUMG00000181733.2 +2753 JH159148.1 HAVANA gene 26300 26506 207.0 - 0 ENSG00000263115.1 unprocessed_pseudogene KRTAP9-10P 2 OTTHUMG00000181732.1 +2754 JH159148.1 HAVANA gene 30413 31451 1039.0 - 0 ENSG00000262221.1 protein_coding KRTAP9-7 2 OTTHUMG00000181731.1 +2755 JH159148.1 HAVANA gene 35275 35799 525.0 - 0 ENSG00000262946.1 unprocessed_pseudogene KRTAP9-11P 2 OTTHUMG00000181730.1 +2756 JH159148.1 HAVANA gene 40469 41771 1303.0 - 0 ENSG00000263263.1 protein_coding KRTAP9-6 2 OTTHUMG00000181729.1 +2757 JH159148.1 HAVANA gene 50746 51726 981.0 - 0 ENSG00000262594.4 protein_coding KRTAP9-9 2 OTTHUMG00000181728.1 +2758 JH159148.1 HAVANA gene 56457 57423 967.0 - 0 ENSG00000262896.2 protein_coding KRTAP9-4 2 OTTHUMG00000181727.1 +2759 JH159148.1 HAVANA gene 68109 69113 1005.0 - 0 ENSG00000262573.2 protein_coding KRTAP9-2 2 OTTHUMG00000181726.1 +2760 JH159148.1 HAVANA gene 82499 83030 532.0 - 0 ENSG00000262214.1 unprocessed_pseudogene KRTAP9-12P 2 OTTHUMG00000181725.1 +2761 JH636055.2 ENSEMBL gene 33413 33710 298.0 + 0 ENSG00000266381.2 misc_RNA RF00017 3 +2762 JH636055.2 HAVANA gene 75733 76864 351.0 + 0 ENSG00000266695.1 unprocessed_pseudogene AC090958.2 2 OTTHUMG00000185230.1 +2763 JH636055.2 HAVANA gene 74185 79971 628.0 - 0 ENSG00000266576.1 unprocessed_pseudogene MARK2P14 2 OTTHUMG00000185229.1 +2764 JH636055.2 HAVANA gene 85253 86487 282.0 - 0 ENSG00000265773.1 unprocessed_pseudogene NUP210P2 2 OTTHUMG00000185228.1 +2765 JH636055.2 HAVANA gene 107362 107635 274.0 + 0 ENSG00000264064.2 processed_pseudogene AC226154.1 2 OTTHUMG00000185227.1 +2766 JH636055.2 HAVANA gene 94919 128746 1827.0 - 0 ENSG00000266488.2 unprocessed_pseudogene AC226154.2 2 OTTHUMG00000185226.2 +2767 JH636055.2 ENSEMBL gene 141574 143511 533.0 + 0 ENSG00000282035.1 protein_coding AC090958.3 3 +2768 JH636055.2 HAVANA gene 141500 171339 2235.0 + 0 ENSG00000279643.3 protein_coding TAMM41 2 OTTHUMG00000189405.3 +2769 KB021644.2 HAVANA gene 24348 24581 234.0 + 0 ENSG00000281421.1 TEC AL513210.2 2 OTTHUMG00000190288.1 +2770 KB663609.1 HAVANA gene 2036 6629 1731.0 + 0 ENSG00000272835.3 protein_coding SMDT1 2 OTTHUMG00000189867.1 +2771 KB663609.1 HAVANA gene 11975 12373 399.0 - 0 ENSG00000280750.1 sense_intronic AL021878.3 2 OTTHUMG00000189869.1 overlapping_locus +2772 KB663609.1 HAVANA gene 7870 13300 1416.0 - 0 ENSG00000273397.4 protein_coding NDUFA6 2 OTTHUMG00000189868.1 overlapping_locus +2773 KB663609.1 HAVANA gene 30110 31298 1189.0 - 0 ENSG00000273194.3 processed_pseudogene OLA1P1 2 OTTHUMG00000189871.1 +2774 KB663609.1 HAVANA gene 48826 53233 1684.0 - 0 ENSG00000272532.6 polymorphic_pseudogene CYP2D6 2 OTTHUMG00000189872.1 +2775 KB663609.1 HAVANA gene 54873 55328 456.0 + 0 ENSG00000281417.1 processed_pseudogene AC236040.3 2 OTTHUMG00000189873.1 overlapping_locus +2776 KB663609.1 ENSEMBL gene 60985 65365 1657.0 - 0 ENSG00000272000.6 protein_coding AC236040.1 3 +2777 KB663609.1 HAVANA gene 13276 71181 4254.0 + 0 ENSG00000280613.2 processed_transcript NDUFA6-DT 2 OTTHUMG00000189870.1 overlapping_locus +2778 KB663609.1 HAVANA gene 70921 72583 351.0 - 0 ENSG00000280821.1 lincRNA AC236040.2 2 OTTHUMG00000189874.1 +2779 KI270442.1 ENSEMBL gene 217250 217401 152.0 - 0 ENSG00000278294.1 rRNA RF00002 3 +2780 KI270442.1 ENSEMBL gene 380608 380726 119.0 + 0 ENSG00000278457.1 rRNA RF00001 3 +2781 KI270711.1 ENSEMBL gene 4612 29626 4520.0 - 0 ENSG00000271254.6 protein_coding AC240274.1 3 +2782 KI270713.1 ENSEMBL gene 21861 22024 164.0 - 0 ENSG00000275405.1 snRNA RF00003 3 +2783 KI270713.1 ENSEMBL gene 30437 30580 144.0 - 0 ENSG00000275987.1 snRNA RF00003 3 +2784 KI270713.1 ENSEMBL gene 31698 32528 831.0 - 0 ENSG00000277475.1 protein_coding AC213203.2 3 +2785 KI270713.1 ENSEMBL gene 35407 35916 510.0 + 0 ENSG00000268674.2 protein_coding AC213203.1 3 +2786 KI270721.1 ENSEMBL gene 2585 11802 740.0 + 0 ENSG00000276345.1 protein_coding AC004556.1 3 +2787 KI270721.1 ENSEMBL gene 51722 51792 71.0 + 0 ENSG00000273532.1 misc_RNA RF01972 3 +2788 KI270721.1 ENSEMBL gene 52666 52734 69.0 + 0 ENSG00000276351.1 misc_RNA RF01973 3 +2789 KI270721.1 ENSEMBL gene 52895 53010 116.0 + 0 ENSG00000275661.1 misc_RNA RF01974 3 +2790 KI270726.1 ENSEMBL gene 26241 26534 294.0 + 0 ENSG00000277856.1 protein_coding AC233755.2 3 +2791 KI270726.1 ENSEMBL gene 41444 41876 351.0 + 0 ENSG00000275063.1 protein_coding AC233755.1 3 +2792 KI270727.1 ENSEMBL gene 20741 22392 1651.0 - 0 ENSG00000278673.1 pseudogene AC136352.4 3 +2793 KI270727.1 ENSEMBL gene 34890 34996 107.0 + 0 ENSG00000277890.1 snRNA RF00026 3 +2794 KI270727.1 ENSEMBL gene 100123 101141 600.0 - 0 ENSG00000277666.1 protein_coding AC136352.3 3 +2795 KI270727.1 ENSEMBL gene 156089 156195 107.0 - 0 ENSG00000277927.1 snRNA RF00026 3 +2796 KI270727.1 ENSEMBL gene 136160 167571 2627.0 - 0 ENSG00000276760.4 protein_coding AC136352.2 3 ncRNA_host +2797 KI270727.1 ENSEMBL gene 372322 373405 1084.0 + 0 ENSG00000275249.1 protein_coding AC171558.3 3 +2798 KI270727.1 ENSEMBL gene 386278 387620 1343.0 + 0 ENSG00000274792.1 protein_coding AC171558.1 3 +2799 KI270727.1 ENSEMBL gene 417283 418206 921.0 + 0 ENSG00000276872.1 pseudogene AC171558.4 3 +2800 KI270728.1 ENSEMBL gene 17234 19833 1806.0 + 0 ENSG00000274175.1 protein_coding AC133551.1 3 +2801 KI270728.1 ENSEMBL gene 137798 139135 1338.0 + 0 ENSG00000273843.1 processed_pseudogene AC009091.1 3 +2802 KI270728.1 ENSEMBL gene 933862 936467 1426.0 - 0 ENSG00000275869.1 protein_coding AC136612.1 3 +2803 KI270728.1 ENSEMBL gene 1109945 1110235 291.0 + 0 ENSG00000278510.1 processed_pseudogene AC007908.1 3 +2804 KI270728.1 ENSEMBL gene 1139577 1147868 3660.0 - 0 ENSG00000273554.4 protein_coding AC136616.1 3 +2805 KI270728.1 ENSEMBL gene 1157687 1240349 285.0 + 0 ENSG00000278782.1 protein_coding AC136616.3 3 +2806 KI270728.1 ENSEMBL gene 1167457 1257196 473.0 + 0 ENSG00000277761.1 protein_coding AC136616.2 3 +2807 KI270728.1 ENSEMBL gene 1270984 1271271 288.0 + 0 ENSG00000277836.1 protein_coding AC141272.1 3 +2808 KI270731.1 ENSEMBL gene 10598 13001 2404.0 - 0 ENSG00000278633.1 protein_coding AC023491.2 3 +2809 KI270731.1 ENSEMBL gene 26533 27138 603.0 - 0 ENSG00000278066.1 pseudogene AC023491.1 3 +2810 KI270733.1 ENSEMBL gene 122136 122225 90.0 + 0 ENSG00000273739.1 misc_RNA RF01518 3 +2811 KI270733.1 ENSEMBL gene 128877 129029 153.0 + 0 ENSG00000276700.1 rRNA RNA5-8SN2 3 +2812 KI270733.1 ENSEMBL gene 167218 167307 90.0 + 0 ENSG00000276312.1 misc_RNA RF01518 3 +2813 KI270733.1 ENSEMBL gene 173956 174108 153.0 + 0 ENSG00000275757.1 rRNA RNA5-8SN2 3 +2814 KI270734.1 ENSEMBL gene 59711 60316 603.0 + 0 ENSG00000278573.1 pseudogene AC007325.3 3 +2815 KI270734.1 ENSEMBL gene 72411 74814 2404.0 + 0 ENSG00000276017.1 protein_coding AC007325.1 3 +2816 KI270734.1 ENSEMBL gene 131494 137392 1213.0 + 0 ENSG00000278817.1 protein_coding AC007325.4 3 +2817 KI270734.1 ENSEMBL gene 138082 161852 2405.0 - 0 ENSG00000277196.4 protein_coding AC007325.2 3 +2818 KI270744.1 ENSEMBL gene 51009 51114 106.0 - 0 ENSG00000278625.1 snRNA RF00026 3 +2819 KI270750.1 ENSEMBL gene 148668 148843 176.0 + 0 ENSG00000277374.1 snRNA RF00003 3 +2820 KI270758.1 ENSEMBL gene 9689 14891 1278.0 - 0 ENSG00000277263.1 protein_coding HLA-DRA 3 +2821 KI270758.1 ENSEMBL gene 46833 59248 1368.0 + 0 ENSG00000275798.4 protein_coding AC226007.1 3 +2822 KI270759.1 HAVANA gene 47982 407457 13474.0 + 0 ENSG00000281216.1 protein_coding KIF26B 2 OTTHUMG00000189639.1 +2823 KI270760.1 HAVANA gene 54505 61341 574.0 - 0 ENSG00000281870.1 lincRNA AC208814.1 2 OTTHUMG00000189624.1 +2824 KI270760.1 HAVANA gene 62202 64565 792.0 - 0 ENSG00000280892.1 lincRNA AL161638.3 2 OTTHUMG00000189625.1 +2825 KI270760.1 HAVANA gene 68752 74035 481.0 + 0 ENSG00000281104.1 lincRNA AL161638.4 2 OTTHUMG00000189626.1 +2826 KI270761.1 HAVANA gene 9555 10601 1047.0 + 0 ENSG00000274870.1 protein_coding OR2T4 2 OTTHUMG00000189640.2 +2827 KI270761.1 HAVANA gene 35924 36850 927.0 + 0 ENSG00000278689.1 protein_coding OR2T6 2 OTTHUMG00000189641.2 +2828 KI270761.1 HAVANA gene 60035 61144 1110.0 + 0 ENSG00000275244.1 protein_coding OR2T1 2 OTTHUMG00000189642.2 +2829 KI270761.1 HAVANA gene 95247 96173 927.0 + 0 ENSG00000281395.1 protein_coding OR2T7 2 OTTHUMG00000189643.2 +2830 KI270761.1 HAVANA gene 106816 107869 1054.0 + 0 ENSG00000276821.1 protein_coding OR2T2 2 OTTHUMG00000189644.1 +2831 KI270761.1 HAVANA gene 127366 128373 1008.0 + 0 ENSG00000278377.1 protein_coding OR2T3 2 OTTHUMG00000189645.1 +2832 KI270761.1 HAVANA gene 142604 143637 1034.0 + 0 ENSG00000273827.2 protein_coding OR2T5 2 OTTHUMG00000189646.1 +2833 KI270762.1 HAVANA gene 43490 44448 455.0 - 0 ENSG00000281225.1 antisense AL139246.7 2 OTTHUMG00000189595.1 +2834 KI270762.1 HAVANA gene 44627 45669 514.0 - 0 ENSG00000281274.1 antisense AL139246.8 2 OTTHUMG00000189596.1 +2835 KI270762.1 HAVANA gene 18649 56720 10431.0 + 0 ENSG00000276429.3 protein_coding PLCH2 2 OTTHUMG00000189594.1 +2836 KI270762.1 HAVANA gene 59723 77790 5079.0 - 0 ENSG00000273494.3 protein_coding PANK4 2 OTTHUMG00000189597.1 +2837 KI270762.1 HAVANA gene 79935 81435 1501.0 - 0 ENSG00000273529.2 protein_coding HES5 2 OTTHUMG00000189598.1 +2838 KI270762.1 HAVANA gene 97655 98650 996.0 + 0 ENSG00000281734.1 lincRNA AL139246.9 2 OTTHUMG00000189599.1 +2839 KI270762.1 HAVANA gene 101110 108221 6137.0 - 0 ENSG00000281197.2 antisense TNFRSF14-AS1 2 OTTHUMG00000189600.1 +2840 KI270762.1 HAVANA gene 106829 116812 6459.0 + 0 ENSG00000273936.4 protein_coding TNFRSF14 2 OTTHUMG00000189601.2 +2841 KI270762.1 HAVANA gene 117600 121078 1297.0 + 0 ENSG00000280609.1 TEC AL139246.6 2 OTTHUMG00000189602.1 +2842 KI270762.1 HAVANA gene 132750 135724 627.0 + 0 ENSG00000281740.1 lincRNA AL139246.10 2 OTTHUMG00000189603.1 +2843 KI270762.1 HAVANA gene 137681 142659 3371.0 + 0 ENSG00000275125.4 protein_coding PRXL2B 2 OTTHUMG00000189604.2 +2844 KI270762.1 HAVANA gene 141829 184177 3841.0 - 0 ENSG00000277131.4 protein_coding MMEL1 2 OTTHUMG00000189605.1 +2845 KI270762.1 HAVANA gene 183755 187405 373.0 + 0 ENSG00000280645.1 antisense AC234231.1 2 OTTHUMG00000189606.1 +2846 KI270762.1 HAVANA gene 186761 352889 5657.0 - 0 ENSG00000275571.2 protein_coding TTC34 2 OTTHUMG00000189607.3 +2847 KI270763.1 HAVANA gene 17953 19576 792.0 - 0 ENSG00000280891.1 lincRNA AL606534.6 2 OTTHUMG00000189632.1 +2848 KI270763.1 HAVANA gene 41620 59977 880.0 - 0 ENSG00000280534.2 lincRNA LINC01347 2 OTTHUMG00000189634.1 +2849 KI270763.1 ENSEMBL gene 93264 93367 104.0 - 0 ENSG00000277580.1 snRNA RNU6-747P 3 +2850 KI270763.1 HAVANA gene 68415 113852 3841.0 - 0 ENSG00000280994.1 lincRNA LINC01347 2 OTTHUMG00000189633.2 ncRNA_host +2851 KI270763.1 HAVANA gene 136536 267429 7848.0 - 0 ENSG00000276725.4 protein_coding CEP170 2 OTTHUMG00000189635.1 +2852 KI270763.1 HAVANA gene 268164 512199 3052.0 + 0 ENSG00000276111.3 protein_coding SDCCAG8 2 OTTHUMG00000189636.1 +2853 KI270763.1 HAVANA gene 500341 867542 6424.0 - 0 ENSG00000275199.4 protein_coding AKT3 2 OTTHUMG00000189637.2 +2854 KI270763.1 HAVANA gene 867846 868599 754.0 + 0 ENSG00000280906.1 lincRNA AC225099.1 2 OTTHUMG00000189638.1 +2855 KI270765.1 ENSEMBL gene 35155 35316 162.0 - 0 ENSG00000273990.1 snRNA RF00003 3 +2856 KI270765.1 ENSEMBL gene 63074 63238 165.0 - 0 ENSG00000273757.1 snRNA RF00003 3 +2857 KI270765.1 ENSEMBL gene 71963 72126 164.0 - 0 ENSG00000274574.1 snRNA RF00003 3 +2858 KI270765.1 HAVANA gene 72684 79322 546.0 - 0 ENSG00000281416.1 lincRNA AC006359.4 2 OTTHUMG00000189627.1 +2859 KI270765.1 HAVANA gene 78896 80038 562.0 + 0 ENSG00000280708.1 lincRNA AC006359.3 2 OTTHUMG00000189628.1 +2860 KI270765.1 HAVANA gene 104160 104819 660.0 + 0 ENSG00000275974.2 protein_coding PPIAL4F 2 OTTHUMG00000189629.1 +2861 KI270765.1 HAVANA gene 138513 152932 1206.0 - 0 ENSG00000280579.1 lincRNA AC006359.2 2 OTTHUMG00000189630.1 +2862 KI270765.1 HAVANA gene 171699 180608 415.0 + 0 ENSG00000280460.1 TEC AC006359.1 2 OTTHUMG00000189631.1 +2863 KI270766.1 HAVANA gene 1359 4183 1406.0 - 0 ENSG00000280946.1 unprocessed_pseudogene CR854858.2 2 OTTHUMG00000189608.1 +2864 KI270766.1 HAVANA gene 18521 23403 1763.0 + 0 ENSG00000276816.2 unprocessed_pseudogene PRAMEF22 2 OTTHUMG00000189609.1 +2865 KI270766.1 HAVANA gene 40716 43514 1452.0 - 0 ENSG00000281597.1 unprocessed_pseudogene CR854858.4 2 OTTHUMG00000189610.1 +2866 KI270766.1 HAVANA gene 50094 51202 714.0 - 0 ENSG00000281229.1 unprocessed_pseudogene CR854858.3 2 OTTHUMG00000189611.1 +2867 KI270766.1 HAVANA gene 61039 62397 1148.0 - 0 ENSG00000274109.2 protein_coding HNRNPCL2 2 OTTHUMG00000189612.1 +2868 KI270766.1 HAVANA gene 74362 77160 1452.0 + 0 ENSG00000281711.1 unprocessed_pseudogene CR854858.5 2 OTTHUMG00000189613.1 +2869 KI270766.1 HAVANA gene 94498 103687 1918.0 - 0 ENSG00000276299.5 protein_coding PRAMEF25 2 OTTHUMG00000189614.1 +2870 KI270766.1 HAVANA gene 110156 111516 1148.0 - 0 ENSG00000273865.2 protein_coding HNRNPCL4 2 OTTHUMG00000189615.1 +2871 KI270766.1 HAVANA gene 115899 122914 1863.0 + 0 ENSG00000281573.1 protein_coding PRAMEF9 2 OTTHUMG00000189616.1 +2872 KI270766.1 HAVANA gene 140282 143048 1425.0 - 0 ENSG00000274107.2 unprocessed_pseudogene CR854858.1 2 OTTHUMG00000189617.1 +2873 KI270766.1 HAVANA gene 166800 169574 1440.0 - 0 ENSG00000277853.2 protein_coding PRAMEF18 2 OTTHUMG00000189618.2 +2874 KI270766.1 HAVANA gene 189331 192129 1380.0 + 0 ENSG00000281073.1 unprocessed_pseudogene AC244216.1 2 OTTHUMG00000189619.1 +2875 KI270766.1 HAVANA gene 197666 206903 1855.0 + 0 ENSG00000276420.5 protein_coding PRAMEF5 2 OTTHUMG00000189620.1 +2876 KI270766.1 HAVANA gene 217004 219095 1139.0 - 0 ENSG00000281121.1 unprocessed_pseudogene AC244216.2 2 OTTHUMG00000189621.1 +2877 KI270766.1 ENSEMBL gene 222593 222699 107.0 - 0 ENSG00000252239.2 snRNA RF00026 3 +2878 KI270766.1 HAVANA gene 224772 228605 1601.0 - 0 ENSG00000278021.4 protein_coding PRAMEF8 2 OTTHUMG00000189622.1 +2879 KI270766.1 HAVANA gene 247000 252454 1604.0 + 0 ENSG00000276370.2 protein_coding PRAMEF33 2 OTTHUMG00000189623.1 +2880 KI270767.1 HAVANA gene 9378 15971 2607.0 + 0 ENSG00000280733.1 lincRNA LINC01238 2 OTTHUMG00000189660.1 +2881 KI270767.1 HAVANA gene 42386 44708 2323.0 + 0 ENSG00000280591.1 lincRNA AC237191.1 2 OTTHUMG00000189661.1 +2882 KI270767.1 HAVANA gene 69253 70224 543.0 - 0 ENSG00000280691.1 lincRNA AC237191.2 2 OTTHUMG00000189662.1 +2883 KI270767.1 HAVANA gene 91754 128208 572.0 - 0 ENSG00000280980.1 lincRNA LINC01880 2 OTTHUMG00000189663.1 +2884 KI270767.1 HAVANA gene 138964 160302 287.0 + 0 ENSG00000281782.1 unprocessed_pseudogene LINC01881 2 OTTHUMG00000189664.1 +2885 KI270768.1 HAVANA gene 26217 27243 1027.0 - 0 ENSG00000281848.1 processed_pseudogene AC093724.2 2 OTTHUMG00000189658.1 +2886 KI270768.1 HAVANA gene 25382 71290 2484.0 + 0 ENSG00000274392.3 transcribed_unprocessed_pseudogene C2orf27A 2 OTTHUMG00000189657.1 +2887 KI270768.1 HAVANA gene 98954 105653 1326.0 - 0 ENSG00000274362.1 lincRNA C2orf27B 2 OTTHUMG00000189659.1 +2888 KI270769.1 HAVANA gene 35379 35988 610.0 + 0 ENSG00000280770.1 sense_intronic AC216281.1 2 OTTHUMG00000189652.1 +2889 KI270769.1 HAVANA gene 9880 94564 4687.0 + 0 ENSG00000274891.3 protein_coding TRAPPC12 2 OTTHUMG00000189651.1 +2890 KI270769.1 HAVANA gene 106423 106898 476.0 + 0 ENSG00000281723.1 lincRNA AC114810.2 2 OTTHUMG00000189653.1 +2891 KI270769.1 HAVANA gene 106831 110463 1902.0 - 0 ENSG00000280830.1 protein_coding ADI1 2 OTTHUMG00000189654.1 +2892 KI270770.1 HAVANA gene 24752 25347 596.0 + 0 ENSG00000280538.1 lincRNA AC208876.1 2 OTTHUMG00000189648.1 +2893 KI270770.1 HAVANA gene 17084 25780 941.0 + 0 ENSG00000281806.1 lincRNA AC208876.2 2 OTTHUMG00000189647.1 +2894 KI270770.1 HAVANA gene 55780 130155 1210.0 - 0 ENSG00000281362.1 lincRNA LINC01115 2 OTTHUMG00000189649.1 +2895 KI270772.1 HAVANA gene 34801 36761 1961.0 - 0 ENSG00000280944.1 lincRNA AC241851.2 2 OTTHUMG00000189794.1 +2896 KI270772.1 HAVANA gene 42647 42870 224.0 + 0 ENSG00000280917.1 processed_pseudogene AC241851.1 2 OTTHUMG00000189795.1 +2897 KI270772.1 HAVANA gene 86687 87157 347.0 + 0 ENSG00000281668.1 IG_V_pseudogene IGKV1OR2-118 2 OTTHUMG00000189796.1 +2898 KI270772.1 HAVANA gene 93190 93293 104.0 - 0 ENSG00000281095.1 unprocessed_pseudogene AC233263.5 2 OTTHUMG00000189797.1 +2899 KI270773.1 HAVANA gene 4168 64734 693.0 + 0 ENSG00000281486.1 protein_coding SNTG2 2 OTTHUMG00000189650.2 +2900 KI270774.1 HAVANA gene 25662 29587 850.0 - 0 ENSG00000281232.1 antisense AC108489.1 2 OTTHUMG00000189800.1 +2901 KI270774.1 HAVANA gene 1089 50794 559.0 + 0 ENSG00000281020.2 protein_coding SNTG2 2 OTTHUMG00000189799.1 +2902 KI270776.1 HAVANA gene 13014 14005 739.0 - 0 ENSG00000281082.1 antisense AC131097.5 2 OTTHUMG00000189666.1 +2903 KI270776.1 HAVANA gene 11161 16306 1212.0 + 0 ENSG00000276126.3 protein_coding GAL3ST2 2 OTTHUMG00000189665.1 +2904 KI270776.1 HAVANA gene 20410 24114 2250.0 - 0 ENSG00000281624.1 antisense AC131097.7 2 OTTHUMG00000189667.1 +2905 KI270776.1 HAVANA gene 20923 29511 4689.0 + 0 ENSG00000277926.4 protein_coding NEU4 2 OTTHUMG00000189668.2 +2906 KI270776.1 HAVANA gene 56478 57134 571.0 + 0 ENSG00000281648.1 lincRNA AC131097.8 2 OTTHUMG00000189669.1 +2907 KI270776.1 HAVANA gene 61979 71006 2114.0 - 0 ENSG00000276977.3 protein_coding PDCD1 2 OTTHUMG00000189670.2 +2908 KI270776.1 HAVANA gene 81698 85921 2606.0 + 0 ENSG00000277949.2 protein_coding RTP5 2 OTTHUMG00000189671.1 +2909 KI270776.1 HAVANA gene 106087 114649 670.0 - 0 ENSG00000281553.2 lincRNA AC131097.6 2 OTTHUMG00000189673.1 +2910 KI270776.1 HAVANA gene 93461 171794 824.0 + 0 ENSG00000280686.2 processed_transcript LINC01237 2 OTTHUMG00000189672.1 overlapping_locus +2911 KI270777.1 HAVANA gene 1181 9497 6730.0 + 0 ENSG00000281763.2 protein_coding DHX36 2 OTTHUMG00000189655.3 +2912 KI270777.1 HAVANA gene 24216 164217 5444.0 - 0 ENSG00000277101.4 protein_coding ARHGEF26 2 OTTHUMG00000189656.1 +2913 KI270777.1 HAVANA gene 163888 165534 384.0 + 0 ENSG00000281157.2 antisense ARHGEF26-AS1 2 OTTHUMG00000189826.1 +2914 KI270779.1 HAVANA gene 10487 10957 471.0 + 0 ENSG00000281188.1 lincRNA AC233280.10 2 OTTHUMG00000189760.1 +2915 KI270779.1 HAVANA gene 20643 21969 1070.0 - 0 ENSG00000281562.1 processed_pseudogene AC233280.11 2 OTTHUMG00000189761.1 +2916 KI270779.1 HAVANA gene 26062 28424 1684.0 - 0 ENSG00000281564.1 lincRNA AC233280.12 2 OTTHUMG00000189762.1 +2917 KI270779.1 HAVANA gene 28593 56401 2001.0 + 0 ENSG00000281334.1 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000189765.1 overlapping_locus +2918 KI270779.1 HAVANA gene 28559 110461 17603.0 + 0 ENSG00000282953.1 lincRNA MUC20-OT1 2 OTTHUMG00000189766.5 overlapping_locus +2919 KI270779.1 HAVANA gene 91379 111620 4249.0 + 0 ENSG00000276583.4 protein_coding MUC20 2 OTTHUMG00000189763.1 overlapping_locus +2920 KI270779.1 HAVANA gene 117262 190097 27355.0 - 0 ENSG00000277585.5 protein_coding MUC4 2 OTTHUMG00000189764.4 +2921 KI270780.1 HAVANA gene 37857 38759 903.0 + 0 ENSG00000281246.1 unprocessed_pseudogene AF186996.7 2 OTTHUMG00000189681.1 +2922 KI270780.1 HAVANA gene 46622 47533 912.0 + 0 ENSG00000280982.1 unprocessed_pseudogene AF186996.5 2 OTTHUMG00000189682.1 +2923 KI270780.1 HAVANA gene 59049 59945 897.0 + 0 ENSG00000281785.1 unprocessed_pseudogene AF186996.9 2 OTTHUMG00000189683.1 +2924 KI270780.1 HAVANA gene 68808 69690 883.0 + 0 ENSG00000280597.1 unprocessed_pseudogene AF186996.4 2 OTTHUMG00000189684.1 +2925 KI270780.1 HAVANA gene 81617 82540 924.0 + 0 ENSG00000280996.1 unprocessed_pseudogene AF186996.6 2 OTTHUMG00000189685.1 +2926 KI270780.1 HAVANA gene 90568 90923 356.0 + 0 ENSG00000281363.1 unprocessed_pseudogene AF186996.8 2 OTTHUMG00000189686.1 +2927 KI270780.1 HAVANA gene 135412 136191 780.0 + 0 ENSG00000280813.1 unprocessed_pseudogene AC092902.4 2 OTTHUMG00000189687.1 +2928 KI270781.1 HAVANA gene 24940 28226 727.0 - 0 ENSG00000281738.1 sense_intronic LINC01839 2 OTTHUMG00000189827.1 overlapping_locus +2929 KI270781.1 HAVANA gene 93681 111782 829.0 - 0 ENSG00000281250.1 lincRNA LINC02054 2 OTTHUMG00000189828.1 overlapping_locus +2930 KI270782.1 HAVANA gene 2835 53621 13382.0 + 0 ENSG00000275544.4 protein_coding BDH1 2 OTTHUMG00000189829.2 +2931 KI270782.1 HAVANA gene 91770 101881 626.0 - 0 ENSG00000281360.1 lincRNA AC231647.2 2 OTTHUMG00000189830.1 +2932 KI270782.1 HAVANA gene 103631 109958 600.0 + 0 ENSG00000280749.1 lincRNA AC231647.1 2 OTTHUMG00000189832.1 overlapping_locus +2933 KI270782.1 HAVANA gene 101963 115224 558.0 + 0 ENSG00000280611.1 lincRNA AC128709.4 2 OTTHUMG00000189831.1 overlapping_locus +2934 KI270783.1 HAVANA gene 69053 77513 2041.0 + 0 ENSG00000280552.1 lincRNA AC107622.1 2 OTTHUMG00000189679.1 +2935 KI270784.1 HAVANA gene 7184 7366 183.0 - 0 ENSG00000267237.4 unprocessed_pseudogene AC073135.2 2 OTTHUMG00000189841.1 +2936 KI270784.1 HAVANA gene 9250 12063 2729.0 + 0 ENSG00000267639.3 processed_pseudogene AC073135.3 2 OTTHUMG00000189842.1 +2937 KI270784.1 ENSEMBL gene 38711 38814 104.0 - 0 ENSG00000278747.1 snRNA RF00026 3 +2938 KI270784.1 HAVANA gene 45515 54805 385.0 - 0 ENSG00000281496.1 unprocessed_pseudogene AC073135.4 2 OTTHUMG00000189843.1 +2939 KI270784.1 HAVANA gene 65501 83194 1528.0 - 0 ENSG00000276938.3 lincRNA FAM157A 2 OTTHUMG00000189844.1 +2940 KI270784.1 HAVANA gene 112285 114230 802.0 + 0 ENSG00000281577.1 processed_pseudogene AC240720.3 2 OTTHUMG00000189845.1 +2941 KI270784.1 HAVANA gene 114840 115897 1058.0 - 0 ENSG00000281503.1 unprocessed_pseudogene AC240720.2 2 OTTHUMG00000189846.1 +2942 KI270784.1 HAVANA gene 123739 125504 1154.0 - 0 ENSG00000281062.2 transcribed_unprocessed_pseudogene AC240720.1 2 OTTHUMG00000189847.1 +2943 KI270784.1 ENSEMBL gene 160536 160642 107.0 + 0 ENSG00000274706.1 snRNA RNU6-821P 3 +2944 KI270784.1 HAVANA gene 151233 178431 6567.0 + 0 ENSG00000281617.2 transcribed_unprocessed_pseudogene ANKRD18DP 2 OTTHUMG00000189848.1 +2945 KI270785.1 HAVANA gene 51257 93824 474.0 - 0 ENSG00000280621.1 lincRNA AC110772.2 2 OTTHUMG00000189939.1 +2946 KI270786.1 HAVANA gene 37434 38043 610.0 - 0 ENSG00000281916.1 lincRNA AF250324.4 2 OTTHUMG00000190032.1 +2947 KI270786.1 ENSEMBL gene 43092 43267 176.0 - 0 ENSG00000276052.1 snRNA RNU1-51P 3 +2948 KI270786.1 HAVANA gene 218541 221894 592.0 + 0 ENSG00000281830.1 lincRNA LINC01596 2 OTTHUMG00000190034.1 +2949 KI270786.1 HAVANA gene 113889 232669 1655.0 - 0 ENSG00000280716.1 lincRNA FRG1-DT 2 OTTHUMG00000190033.1 +2950 KI270788.1 HAVANA gene 1292 1694 403.0 + 0 ENSG00000281122.1 antisense AC108866.2 2 OTTHUMG00000189917.1 overlapping_locus +2951 KI270789.1 HAVANA gene 7954 8602 649.0 - 0 ENSG00000281482.1 processed_pseudogene AC093789.2 2 OTTHUMG00000190010.1 +2952 KI270789.1 HAVANA gene 46049 48244 1849.0 - 0 ENSG00000281800.1 processed_pseudogene ICE2P1 2 OTTHUMG00000190011.1 +2953 KI270789.1 HAVANA gene 59314 202137 2730.0 + 0 ENSG00000281580.2 lincRNA LINC01060 2 OTTHUMG00000190012.1 overlapping_locus +2954 KI270790.1 HAVANA gene 60772 99558 715.0 + 0 ENSG00000280838.1 antisense AC210756.1 2 OTTHUMG00000189860.1 +2955 KI270790.1 HAVANA gene 142348 142705 358.0 - 0 ENSG00000281559.1 processed_pseudogene AC096576.5 2 OTTHUMG00000189861.1 overlapping_locus +2956 KI270790.1 HAVANA gene 183286 204862 948.0 + 0 ENSG00000281470.1 antisense AC096576.4 2 OTTHUMG00000189862.1 +2957 KI270790.1 HAVANA gene 23024 215948 955.0 - 0 ENSG00000281758.1 protein_coding KCNIP4 2 OTTHUMG00000189859.2 overlapping_locus +2958 KI270791.1 HAVANA gene 8170 53293 6092.0 + 0 ENSG00000275079.3 protein_coding LPCAT1 2 OTTHUMG00000190155.1 +2959 KI270791.1 HAVANA gene 64343 121219 4461.0 + 0 ENSG00000276996.2 protein_coding SLC6A3 2 OTTHUMG00000190156.1 +2960 KI270791.1 HAVANA gene 127600 130850 3251.0 + 0 ENSG00000280841.1 TEC AC026748.2 2 OTTHUMG00000190157.1 +2961 KI270791.1 HAVANA gene 143064 143466 403.0 + 0 ENSG00000281511.1 processed_pseudogene MTCO2P32 2 OTTHUMG00000190159.1 overlapping_locus +2962 KI270791.1 HAVANA gene 133942 150427 1692.0 + 0 ENSG00000281736.1 lincRNA LINC01511 2 OTTHUMG00000190158.1 overlapping_locus +2963 KI270791.1 HAVANA gene 168910 195710 6002.0 + 0 ENSG00000274811.3 protein_coding CLPTM1L 2 OTTHUMG00000190160.1 +2964 KI270792.1 HAVANA gene 5687 15815 3482.0 - 0 ENSG00000281019.1 antisense AC116351.3 2 OTTHUMG00000190151.1 +2965 KI270792.1 HAVANA gene 23546 25130 1585.0 + 0 ENSG00000281521.1 lincRNA AC116351.4 2 OTTHUMG00000190152.1 +2966 KI270792.1 HAVANA gene 27336 57450 2885.0 + 0 ENSG00000276920.4 protein_coding NKD2 2 OTTHUMG00000190153.1 +2967 KI270792.1 HAVANA gene 68885 129717 6009.0 - 0 ENSG00000276482.3 protein_coding SLC12A7 2 OTTHUMG00000190154.2 +2968 KI270793.1 HAVANA gene 2318 14551 528.0 - 0 ENSG00000280688.1 protein_coding CEP72 2 OTTHUMG00000190147.2 +2969 KI270793.1 HAVANA gene 14687 24277 591.0 + 0 ENSG00000280978.1 antisense AC106772.4 2 OTTHUMG00000190148.1 +2970 KI270793.1 HAVANA gene 101977 103866 442.0 - 0 ENSG00000280666.1 antisense AC106772.3 2 OTTHUMG00000190149.1 +2971 KI270793.1 HAVANA gene 104239 104459 221.0 + 0 ENSG00000281861.1 protein_coding SLC9A3 2 OTTHUMG00000190150.3 +2972 KI270794.1 ENSEMBL gene 89376 89482 107.0 - 0 ENSG00000277091.1 snRNA RF00026 3 +2973 KI270794.1 HAVANA gene 41479 93514 1339.0 - 0 ENSG00000281690.2 protein_coding ADAMTS12 2 OTTHUMG00000190161.2 ncRNA_host,fragmented_locus +2974 KI270794.1 HAVANA gene 137708 139559 1852.0 + 0 ENSG00000277069.2 protein_coding RXFP3 2 OTTHUMG00000190162.1 +2975 KI270794.1 HAVANA gene 145938 155826 2183.0 - 0 ENSG00000281919.2 protein_coding SLC45A2 2 OTTHUMG00000190163.2 +2976 KI270795.1 HAVANA gene 5389 5730 342.0 - 0 ENSG00000281464.1 antisense AC106795.8 2 OTTHUMG00000190167.1 +2977 KI270795.1 HAVANA gene 10058 89810 3506.0 + 0 ENSG00000275495.3 transcribed_unprocessed_pseudogene AC114936.1 2 OTTHUMG00000190168.1 overlapping_locus +2978 KI270795.1 HAVANA gene 89413 101570 1418.0 + 0 ENSG00000281048.2 antisense AC114936.2 2 OTTHUMG00000190171.1 overlapping_locus +2979 KI270795.1 HAVANA gene 104614 105067 454.0 + 0 ENSG00000281513.1 lincRNA AC114936.4 2 OTTHUMG00000190172.1 overlapping_locus +2980 KI270795.1 HAVANA gene 108929 109894 966.0 + 0 ENSG00000274681.2 processed_pseudogene SUDS3P1 2 OTTHUMG00000190173.1 overlapping_locus +2981 KI270795.1 HAVANA gene 78694 121635 547.0 + 0 ENSG00000281081.1 lincRNA AC114936.3 2 OTTHUMG00000190170.1 overlapping_locus +2982 KI270795.1 HAVANA gene 130718 131530 813.0 - 0 ENSG00000280635.1 protein_coding PROP1 2 OTTHUMG00000190174.1 +2983 KI270796.1 ENSEMBL gene 71403 71666 264.0 - 0 ENSG00000276134.1 misc_RNA RN7SKP117 3 +2984 KI270796.1 HAVANA gene 45885 88269 233.0 + 0 ENSG00000281036.1 lincRNA AC109471.2 2 OTTHUMG00000190165.1 +2985 KI270796.1 HAVANA gene 97363 97974 612.0 - 0 ENSG00000281609.1 lincRNA AC109471.3 2 OTTHUMG00000190166.1 +2986 KI270797.1 HAVANA gene 293 1056 403.0 - 0 ENSG00000281625.1 antisense AL354892.5 2 OTTHUMG00000190293.1 +2987 KI270797.1 HAVANA gene 706 14194 335.0 + 0 ENSG00000281410.1 antisense AL354892.4 2 OTTHUMG00000190294.1 +2988 KI270797.1 HAVANA gene 15316 26789 2626.0 - 0 ENSG00000275368.2 protein_coding TCTE3 2 OTTHUMG00000190295.2 +2989 KI270797.1 HAVANA gene 45615 47244 1630.0 + 0 ENSG00000281833.1 sense_intronic AL354892.6 2 OTTHUMG00000190297.1 overlapping_locus +2990 KI270797.1 HAVANA gene 26824 56786 4251.0 + 0 ENSG00000276187.4 protein_coding ERMARD 2 OTTHUMG00000190296.3 overlapping_locus +2991 KI270797.1 HAVANA gene 63992 74027 2418.0 - 0 ENSG00000280868.1 lincRNA LINC00242 2 OTTHUMG00000190298.1 +2992 KI270797.1 HAVANA gene 65523 78075 2318.0 + 0 ENSG00000281305.1 lincRNA LINC00574 2 OTTHUMG00000190300.1 +2993 KI270797.1 HAVANA gene 84520 85304 694.0 - 0 ENSG00000281249.1 lincRNA AL049612.2 2 OTTHUMG00000190302.1 +2994 KI270798.1 HAVANA gene 2569 4000 336.0 - 0 ENSG00000280883.1 lincRNA AL078605.2 2 OTTHUMG00000190307.1 +2995 KI270798.1 HAVANA gene 1 7125 3322.0 + 0 ENSG00000280592.2 lincRNA LINC01624 2 OTTHUMG00000190306.1 +2996 KI270798.1 HAVANA gene 25114 25613 500.0 - 0 ENSG00000281761.1 lincRNA AL078605.3 2 OTTHUMG00000190310.1 +2997 KI270798.1 HAVANA gene 9444 33803 3226.0 - 0 ENSG00000275555.2 protein_coding DLL1 2 OTTHUMG00000190308.3 +2998 KI270798.1 HAVANA gene 17941 143626 6029.0 + 0 ENSG00000275333.4 protein_coding FAM120B 2 OTTHUMG00000190309.1 +2999 KI270798.1 HAVANA gene 150700 155886 5187.0 + 0 ENSG00000280722.1 sense_overlapping AL008628.2 2 OTTHUMG00000190311.1 +3000 KI270798.1 HAVANA gene 271678 271782 105.0 - 0 ENSG00000281184.1 processed_transcript PSMB1 2 OTTHUMG00000190312.2 +3001 KI270799.1 HAVANA gene 3622 79839 353.0 - 0 ENSG00000280737.1 lincRNA LINC02549 2 OTTHUMG00000190188.1 +3002 KI270800.1 HAVANA gene 13604 14474 871.0 + 0 ENSG00000281567.1 processed_pseudogene SLC25A51P1 2 OTTHUMG00000190186.1 +3003 KI270800.1 HAVANA gene 62117 63226 1110.0 - 0 ENSG00000277364.2 processed_pseudogene ADH5P4 2 OTTHUMG00000190187.1 +3004 KI270801.1 HAVANA gene 58 476 419.0 - 0 ENSG00000280814.1 processed_pseudogene AL356432.5 2 OTTHUMG00000190246.1 +3005 KI270801.1 HAVANA gene 4623 5536 472.0 + 0 ENSG00000280658.1 unprocessed_pseudogene AL356432.4 2 OTTHUMG00000190248.2 +3006 KI270801.1 HAVANA gene 4888 5777 405.0 - 0 ENSG00000281054.1 unprocessed_pseudogene AL356432.6 2 OTTHUMG00000190249.2 +3007 KI270801.1 HAVANA gene 9752 26753 625.0 + 0 ENSG00000281270.1 lincRNA LINC02536 2 OTTHUMG00000190261.1 +3008 KI270801.1 HAVANA gene 255031 255250 220.0 + 0 ENSG00000281841.1 processed_pseudogene MRPS17P5 2 OTTHUMG00000190251.1 +3009 KI270801.1 HAVANA gene 53270 263795 4158.0 - 0 ENSG00000275122.4 protein_coding THEMIS 2 OTTHUMG00000190250.3 +3010 KI270801.1 HAVANA gene 377220 434582 752.0 + 0 ENSG00000280612.1 antisense AL590006.2 2 OTTHUMG00000190252.1 +3011 KI270801.1 HAVANA gene 849861 850510 549.0 + 0 ENSG00000281853.1 antisense AL034349.2 2 OTTHUMG00000190255.1 +3012 KI270801.1 HAVANA gene 313977 870008 9000.0 - 0 ENSG00000273993.4 protein_coding PTPRK 2 OTTHUMG00000190247.3 overlapping_locus +3013 KI270802.1 HAVANA gene 8755 8975 221.0 + 0 ENSG00000280784.1 unprocessed_pseudogene AL121956.3 2 OTTHUMG00000190279.1 +3014 KI270802.1 HAVANA gene 19711 19914 204.0 - 0 ENSG00000280557.1 processed_pseudogene GNG5P1 2 OTTHUMG00000190275.1 +3015 KI270802.1 HAVANA gene 16390 36368 1548.0 + 0 ENSG00000280765.1 lincRNA AL121956.2 2 OTTHUMG00000190274.2 +3016 KI270802.1 HAVANA gene 54878 56489 581.0 - 0 ENSG00000280898.1 lincRNA AC233714.1 2 OTTHUMG00000190280.1 +3017 KI270803.1 HAVANA gene 404 68627 7461.0 + 0 ENSG00000282607.1 protein_coding MGAM 2 OTTHUMG00000190469.1 overlapping_locus +3018 KI270803.1 HAVANA gene 73629 184204 8162.0 + 0 ENSG00000278563.2 protein_coding MGAM2 2 OTTHUMG00000190470.1 +3019 KI270803.1 HAVANA gene 202639 208966 1590.0 - 0 ENSG00000282809.1 transcribed_unprocessed_pseudogene MOXD2P 2 OTTHUMG00000190471.1 +3020 KI270803.1 HAVANA gene 214043 219958 1155.0 - 0 ENSG00000276785.4 protein_coding PRSS58 2 OTTHUMG00000190472.1 +3021 KI270803.1 HAVANA gene 227730 234134 2321.0 - 0 ENSG00000282170.1 transcribed_unprocessed_pseudogene TRY2P 2 OTTHUMG00000190473.1 +3022 KI270803.1 HAVANA gene 247659 250778 384.0 + 0 ENSG00000282264.1 lincRNA AC231381.1 2 OTTHUMG00000190474.1 +3023 KI270803.1 HAVANA gene 249160 251689 956.0 - 0 ENSG00000282303.1 transcribed_unprocessed_pseudogene PRSS3P3 2 OTTHUMG00000190475.1 +3024 KI270803.1 HAVANA gene 261097 261380 284.0 + 0 ENSG00000282423.1 TR_V_pseudogene TRBV1 2 OTTHUMG00000190476.1 +3025 KI270803.1 HAVANA gene 262827 263335 421.0 + 0 ENSG00000282568.1 TR_V_gene TRBV2 2 OTTHUMG00000190477.2 +3026 KI270803.1 HAVANA gene 270445 270951 391.0 + 0 ENSG00000282624.1 TR_V_gene TRBV3-1 2 OTTHUMG00000190478.2 +3027 KI270803.1 HAVANA gene 275087 275569 373.0 + 0 ENSG00000282014.1 TR_V_gene TRBV4-1 2 OTTHUMG00000190479.2 +3028 KI270803.1 HAVANA gene 282576 283443 652.0 + 0 ENSG00000282803.1 TR_V_gene TRBV5-1 2 OTTHUMG00000190480.2 +3029 KI270803.1 HAVANA gene 290201 290690 401.0 + 0 ENSG00000281970.1 TR_V_gene TRBV6-1 2 OTTHUMG00000190481.2 +3030 KI270803.1 HAVANA gene 294086 294607 380.0 + 0 ENSG00000282225.1 TR_V_gene TRBV7-1 2 OTTHUMG00000190482.2 +3031 KI270803.1 HAVANA gene 307332 307896 455.0 + 0 ENSG00000282285.1 TR_V_gene TRBV4-2 2 OTTHUMG00000190483.2 +3032 KI270803.1 HAVANA gene 311095 311575 392.0 + 0 ENSG00000282719.1 TR_V_gene TRBV6-2 2 OTTHUMG00000190572.2 +3033 KI270803.1 HAVANA gene 321102 321561 344.0 + 0 ENSG00000282505.1 TR_V_pseudogene AC234635.2 2 OTTHUMG00000190573.1 +3034 KI270803.1 HAVANA gene 324450 325014 455.0 + 0 ENSG00000282543.1 TR_V_gene AC234635.3 2 OTTHUMG00000190574.2 +3035 KI270803.1 HAVANA gene 332716 333228 424.0 + 0 ENSG00000282353.1 TR_V_gene AC234635.1 2 OTTHUMG00000190575.2 +3036 KI270803.1 HAVANA gene 336391 336930 386.0 + 0 ENSG00000282506.1 TR_V_gene TRBV7-2 2 OTTHUMG00000190576.2 +3037 KI270803.1 HAVANA gene 342211 342489 279.0 + 0 ENSG00000281952.1 TR_V_pseudogene TRBV8-1 2 OTTHUMG00000190485.1 +3038 KI270803.1 HAVANA gene 356222 356494 273.0 + 0 ENSG00000282236.1 TR_V_pseudogene TRBV5-2 2 OTTHUMG00000190486.1 +3039 KI270803.1 HAVANA gene 364383 364838 365.0 + 0 ENSG00000282240.1 TR_V_gene TRBV6-4 2 OTTHUMG00000190487.2 +3040 KI270803.1 HAVANA gene 367925 368431 397.0 + 0 ENSG00000282203.1 TR_V_gene TRBV7-3 2 OTTHUMG00000190488.2 +3041 KI270803.1 HAVANA gene 369968 370237 270.0 + 0 ENSG00000282529.1 TR_V_pseudogene TRBV8-2 2 OTTHUMG00000190489.1 +3042 KI270803.1 HAVANA gene 372793 373259 343.0 + 0 ENSG00000282148.1 TR_V_gene TRBV5-3 2 OTTHUMG00000190490.2 +3043 KI270803.1 HAVANA gene 375482 376003 390.0 + 0 ENSG00000282204.1 TR_V_gene TRBV9 2 OTTHUMG00000190491.2 +3044 KI270803.1 HAVANA gene 383453 383970 412.0 + 0 ENSG00000282618.1 TR_V_gene TRBV10-1 2 OTTHUMG00000190492.2 +3045 KI270803.1 HAVANA gene 391259 391723 364.0 + 0 ENSG00000282711.1 TR_V_gene TRBV11-1 2 OTTHUMG00000190494.2 +3046 KI270803.1 HAVANA gene 398811 399253 344.0 + 0 ENSG00000282760.1 TR_V_pseudogene TRBV12-1 2 OTTHUMG00000190495.1 +3047 KI270803.1 HAVANA gene 408532 409032 395.0 + 0 ENSG00000282007.1 TR_V_gene TRBV10-2 2 OTTHUMG00000190496.2 +3048 KI270803.1 HAVANA gene 417474 417973 408.0 + 0 ENSG00000282436.1 lincRNA TRBV11-2 2 OTTHUMG00000190497.1 +3049 KI270803.1 HAVANA gene 424463 424905 344.0 + 0 ENSG00000282326.1 TR_V_pseudogene TRBV12-2 2 OTTHUMG00000190498.1 +3050 KI270803.1 HAVANA gene 434527 435028 410.0 + 0 ENSG00000277110.3 TR_V_gene TRBV6-5 2 OTTHUMG00000190499.2 +3051 KI270803.1 HAVANA gene 438753 439214 347.0 + 0 ENSG00000282756.1 TR_V_gene TRBV7-4 2 OTTHUMG00000190500.2 +3052 KI270803.1 HAVANA gene 446498 447163 544.0 + 0 ENSG00000282466.1 TR_V_gene TRBV5-4 2 OTTHUMG00000190501.2 +3053 KI270803.1 HAVANA gene 453134 453612 390.0 + 0 ENSG00000282459.1 TR_V_gene TRBV6-6 2 OTTHUMG00000190502.2 +3054 KI270803.1 HAVANA gene 457694 458165 345.0 + 0 ENSG00000282709.1 TR_V_pseudogene TRBV7-5 2 OTTHUMG00000190503.1 +3055 KI270803.1 HAVANA gene 466144 466615 350.0 + 0 ENSG00000282577.1 TR_V_gene TRBV5-5 2 OTTHUMG00000190504.2 +3056 KI270803.1 HAVANA gene 471417 471891 386.0 + 0 ENSG00000282470.1 TR_V_gene TRBV6-7 2 OTTHUMG00000190505.2 +3057 KI270803.1 HAVANA gene 475728 476265 392.0 + 0 ENSG00000282704.1 TR_V_gene TRBV7-6 2 OTTHUMG00000190506.2 +3058 KI270803.1 HAVANA gene 483625 484131 384.0 + 0 ENSG00000282098.1 TR_V_gene TRBV5-6 2 OTTHUMG00000190507.2 +3059 KI270803.1 HAVANA gene 490912 491406 407.0 + 0 ENSG00000282134.1 TR_V_gene TRBV6-8 2 OTTHUMG00000190508.2 +3060 KI270803.1 HAVANA gene 495222 495723 347.0 + 0 ENSG00000282179.1 TR_V_gene TRBV7-7 2 OTTHUMG00000190509.2 +3061 KI270803.1 HAVANA gene 503684 504150 343.0 + 0 ENSG00000282748.1 TR_V_gene TRBV5-7 2 OTTHUMG00000190510.2 +3062 KI270803.1 HAVANA gene 510990 511422 344.0 + 0 ENSG00000282610.1 TR_V_gene AC233282.2 2 OTTHUMG00000190581.2 +3063 KI270803.1 HAVANA gene 515605 516088 347.0 + 0 ENSG00000282040.1 TR_V_gene AC233282.1 2 OTTHUMG00000190582.2 +3064 KI270803.1 HAVANA gene 523329 524288 478.0 + 0 ENSG00000282054.1 TR_V_gene AC229888.1 2 OTTHUMG00000190583.2 +3065 KI270803.1 HAVANA gene 533023 533495 347.0 + 0 ENSG00000281943.1 TR_V_gene TRBV7-9 2 OTTHUMG00000190512.2 +3066 KI270803.1 HAVANA gene 539540 540023 374.0 + 0 ENSG00000282407.1 TR_V_gene TRBV13 2 OTTHUMG00000190513.2 +3067 KI270803.1 HAVANA gene 547947 548396 344.0 + 0 ENSG00000282340.1 TR_V_gene TRBV10-3 2 OTTHUMG00000190493.3 +3068 KI270803.1 HAVANA gene 558545 559027 392.0 + 0 ENSG00000282242.1 TR_V_gene TRBV11-3 2 OTTHUMG00000190514.2 +3069 KI270803.1 HAVANA gene 564115 564623 409.0 + 0 ENSG00000282208.1 TR_V_gene TRBV12-3 2 OTTHUMG00000190515.2 +3070 KI270803.1 HAVANA gene 567429 567934 406.0 + 0 ENSG00000282354.1 TR_V_gene TRBV12-4 2 OTTHUMG00000190516.2 +3071 KI270803.1 HAVANA gene 584635 585145 411.0 + 0 ENSG00000282605.1 TR_V_gene TRBV12-5 2 OTTHUMG00000190517.2 +3072 KI270803.1 HAVANA gene 591584 592075 406.0 + 0 ENSG00000282252.1 TR_V_gene TRBV14 2 OTTHUMG00000190518.2 +3073 KI270803.1 HAVANA gene 596644 597189 421.0 + 0 ENSG00000282497.1 TR_V_gene TRBV15 2 OTTHUMG00000190519.2 +3074 KI270803.1 HAVANA gene 601732 602185 347.0 + 0 ENSG00000282415.1 TR_V_gene TRBV16 2 OTTHUMG00000190520.2 +3075 KI270803.1 HAVANA gene 605342 606074 344.0 + 0 ENSG00000282483.1 TR_V_gene TRBV17 2 OTTHUMG00000190521.2 +3076 KI270803.1 HAVANA gene 619379 620078 428.0 + 0 ENSG00000282771.1 TR_V_gene TRBV18 2 OTTHUMG00000190522.2 +3077 KI270803.1 HAVANA gene 622512 623195 552.0 + 0 ENSG00000282621.1 TR_V_gene TRBV19 2 OTTHUMG00000190523.2 +3078 KI270803.1 HAVANA gene 630311 631061 413.0 + 0 ENSG00000282064.1 TR_V_gene TRBV20-1 2 OTTHUMG00000190524.2 +3079 KI270803.1 HAVANA gene 640572 641032 348.0 + 0 ENSG00000282462.1 TR_V_pseudogene TRBV21-1 2 OTTHUMG00000190525.1 +3080 KI270803.1 HAVANA gene 645394 645844 337.0 + 0 ENSG00000282036.1 TR_V_pseudogene TRBV22-1 2 OTTHUMG00000190526.1 +3081 KI270803.1 HAVANA gene 649613 650109 347.0 + 0 ENSG00000282449.1 TR_V_gene TRBV23-1 2 OTTHUMG00000190527.2 +3082 KI270803.1 HAVANA gene 658918 659430 381.0 + 0 ENSG00000282730.1 TR_V_gene TRBV24-1 2 OTTHUMG00000190528.2 +3083 KI270803.1 HAVANA gene 668825 670271 1447.0 + 0 ENSG00000282017.1 protein_coding MTRNR2L6 2 OTTHUMG00000190529.1 +3084 KI270803.1 HAVANA gene 673293 673797 381.0 + 0 ENSG00000281963.1 TR_V_gene TRBV25-1 2 OTTHUMG00000190530.2 +3085 KI270803.1 HAVANA gene 683956 684410 316.0 + 0 ENSG00000281972.1 TR_V_pseudogene TRBVA 2 OTTHUMG00000190531.1 +3086 KI270803.1 HAVANA gene 698249 698733 344.0 + 0 ENSG00000281968.1 TR_V_pseudogene TRBV26 2 OTTHUMG00000190532.1 +3087 KI270803.1 HAVANA gene 713965 714505 408.0 + 0 ENSG00000282047.1 TR_V_pseudogene TRBVB 2 OTTHUMG00000190533.1 +3088 KI270803.1 HAVANA gene 717928 718443 387.0 + 0 ENSG00000282234.1 TR_V_gene TRBV27 2 OTTHUMG00000190534.2 +3089 KI270803.1 HAVANA gene 723242 723742 364.0 + 0 ENSG00000282812.1 TR_V_gene TRBV28 2 OTTHUMG00000190535.2 +3090 KI270803.1 HAVANA gene 724940 725346 407.0 + 0 ENSG00000282270.1 processed_pseudogene PGBD4P1 2 OTTHUMG00000190536.1 +3091 KI270803.1 HAVANA gene 742799 743487 402.0 + 0 ENSG00000282628.1 TR_V_gene TRBV29-1 2 OTTHUMG00000190537.2 +3092 KI270803.1 HAVANA gene 752065 755673 1876.0 + 0 ENSG00000274247.4 protein_coding PRSS1 2 OTTHUMG00000190544.2 +3093 KI270803.1 HAVANA gene 763010 766538 742.0 + 0 ENSG00000282295.1 unprocessed_pseudogene PRSS3P1 2 OTTHUMG00000190545.1 +3094 KI270803.1 HAVANA gene 773586 777110 744.0 + 0 ENSG00000282667.1 unprocessed_pseudogene PRSS3P2 2 OTTHUMG00000190584.1 +3095 KI270803.1 HAVANA gene 783678 787211 711.0 + 0 ENSG00000282565.1 unprocessed_pseudogene AC239618.2 2 OTTHUMG00000190585.1 +3096 KI270803.1 HAVANA gene 793943 797532 1152.0 + 0 ENSG00000282049.1 protein_coding PRSS2 2 OTTHUMG00000190547.2 +3097 KI270803.1 HAVANA gene 801616 802509 894.0 - 0 ENSG00000282492.1 processed_pseudogene WBP1LP1 2 OTTHUMG00000190549.1 +3098 KI270803.1 HAVANA gene 809186 809197 12.0 + 0 ENSG00000282253.1 TR_D_gene TRBD1 2 OTTHUMG00000190586.2 +3099 KI270803.1 HAVANA gene 809853 809900 48.0 + 0 ENSG00000282078.1 TR_J_gene TRBJ1-1 2 OTTHUMG00000190587.3 +3100 KI270803.1 HAVANA gene 809990 810037 48.0 + 0 ENSG00000281989.1 TR_J_gene TRBJ1-2 2 OTTHUMG00000190588.3 +3101 KI270803.1 HAVANA gene 810603 810652 50.0 + 0 ENSG00000282500.1 TR_J_gene TRBJ1-3 2 OTTHUMG00000190589.3 +3102 KI270803.1 HAVANA gene 811198 811248 51.0 + 0 ENSG00000282273.1 TR_J_gene TRBJ1-4 2 OTTHUMG00000190590.3 +3103 KI270803.1 HAVANA gene 811471 811520 50.0 + 0 ENSG00000282215.1 TR_J_gene TRBJ1-5 2 OTTHUMG00000190591.3 +3104 KI270803.1 HAVANA gene 811961 812013 53.0 + 0 ENSG00000281957.1 TR_J_gene TRBJ1-6 2 OTTHUMG00000190592.3 +3105 KI270803.1 HAVANA gene 814667 816341 760.0 + 0 ENSG00000281981.2 TR_C_gene TRBC1 2 OTTHUMG00000190593.1 +3106 KI270803.1 HAVANA gene 819338 819387 50.0 + 0 ENSG00000282488.1 TR_J_gene TRBJ2-1 2 OTTHUMG00000190550.3 +3107 KI270803.1 HAVANA gene 819533 819583 51.0 + 0 ENSG00000282272.1 TR_J_gene TRBJ2-2 2 OTTHUMG00000190551.3 +3108 KI270803.1 HAVANA gene 819670 819715 46.0 + 0 ENSG00000282589.1 TR_J_gene TRBJ2-2P 2 OTTHUMG00000190552.2 +3109 KI270803.1 HAVANA gene 819820 819868 49.0 + 0 ENSG00000282371.1 TR_J_gene TRBJ2-3 2 OTTHUMG00000190553.2 +3110 KI270803.1 HAVANA gene 819971 820020 50.0 + 0 ENSG00000282380.1 TR_J_gene TRBJ2-4 2 OTTHUMG00000190554.3 +3111 KI270803.1 HAVANA gene 820092 820139 48.0 + 0 ENSG00000282820.1 TR_J_gene TRBJ2-5 2 OTTHUMG00000190555.3 +3112 KI270803.1 HAVANA gene 820212 820264 53.0 + 0 ENSG00000282154.1 TR_J_gene TRBJ2-6 2 OTTHUMG00000190556.3 +3113 KI270803.1 HAVANA gene 820429 820475 47.0 + 0 ENSG00000282392.1 TR_J_gene TRBJ2-7 2 OTTHUMG00000190557.3 +3114 KI270803.1 HAVANA gene 824014 825718 755.0 + 0 ENSG00000276849.6 TR_C_gene TRBC2 2 OTTHUMG00000190558.1 +3115 KI270803.1 HAVANA gene 835559 836372 447.0 - 0 ENSG00000282297.1 TR_V_gene TRBV30 2 OTTHUMG00000190559.2 +3116 KI270803.1 HAVANA gene 878117 894135 5322.0 + 0 ENSG00000275482.4 protein_coding EPHB6 2 OTTHUMG00000190560.1 +3117 KI270803.1 HAVANA gene 894245 908802 4562.0 - 0 ENSG00000276971.2 protein_coding TRPV6 2 OTTHUMG00000190561.2 +3118 KI270803.1 HAVANA gene 898876 915810 263.0 + 0 ENSG00000282313.1 antisense AC239618.1 2 OTTHUMG00000190562.1 +3119 KI270803.1 HAVANA gene 931168 956875 3686.0 - 0 ENSG00000274348.2 protein_coding TRPV5 2 OTTHUMG00000190563.2 +3120 KI270803.1 HAVANA gene 962410 963932 920.0 + 0 ENSG00000275821.2 protein_coding LLCFC1 2 OTTHUMG00000190564.1 +3121 KI270803.1 HAVANA gene 964181 985748 3923.0 - 0 ENSG00000276615.2 protein_coding KEL 2 OTTHUMG00000190565.3 +3122 KI270803.1 HAVANA gene 1049225 1050262 1038.0 - 0 ENSG00000273914.2 protein_coding OR9A2 2 OTTHUMG00000190577.1 +3123 KI270803.1 HAVANA gene 1070280 1070647 281.0 - 0 ENSG00000282335.1 unprocessed_pseudogene OR9P1P 2 OTTHUMG00000190578.1 +3124 KI270803.1 HAVANA gene 1075387 1076414 1028.0 + 0 ENSG00000277378.1 protein_coding OR6V1 2 OTTHUMG00000190579.1 +3125 KI270803.1 HAVANA gene 1085397 1086652 1141.0 - 0 ENSG00000274360.2 transcribed_unprocessed_pseudogene OR6W1P 2 OTTHUMG00000190580.1 +3126 KI270804.1 HAVANA gene 33137 36517 605.0 + 0 ENSG00000282155.1 lincRNA AC093627.13 2 OTTHUMG00000190401.1 +3127 KI270804.1 HAVANA gene 27071 51782 877.0 - 0 ENSG00000281993.1 lincRNA AC093627.12 2 OTTHUMG00000190400.1 +3128 KI270804.1 HAVANA gene 91775 105266 1766.0 - 0 ENSG00000282226.1 lincRNA AC093614.2 2 OTTHUMG00000190402.1 +3129 KI270804.1 HAVANA gene 105402 111270 5149.0 + 0 ENSG00000282075.1 lincRNA AC093614.1 2 OTTHUMG00000190403.1 +3130 KI270804.1 HAVANA gene 121181 124376 3196.0 - 0 ENSG00000281767.1 lincRNA AC093627.9 2 OTTHUMG00000190395.1 +3131 KI270804.1 HAVANA gene 134324 135417 568.0 + 0 ENSG00000281349.1 lincRNA AC093627.8 2 OTTHUMG00000190396.1 +3132 KI270804.1 HAVANA gene 142339 153584 574.0 - 0 ENSG00000281788.1 antisense AC093627.10 2 OTTHUMG00000190397.1 +3133 KI270804.1 HAVANA gene 152373 155136 1015.0 + 0 ENSG00000281429.1 protein_coding FAM20C 2 OTTHUMG00000190398.2 +3134 KI270805.1 HAVANA gene 53097 186331 563.0 + 0 ENSG00000282185.1 protein_coding PTPRN2 2 OTTHUMG00000190543.3 overlapping_locus +3135 KI270806.1 HAVANA gene 1445 66965 1779.0 + 0 ENSG00000282026.1 transcribed_unprocessed_pseudogene DPY19L2P2 2 OTTHUMG00000190462.1 +3136 KI270806.1 HAVANA gene 79435 80148 714.0 + 0 ENSG00000281979.1 TEC AC216130.1 2 OTTHUMG00000190463.1 +3137 KI270806.1 HAVANA gene 92402 92720 265.0 + 0 ENSG00000282063.1 processed_pseudogene RPL23AP95 2 OTTHUMG00000190464.1 +3138 KI270806.1 HAVANA gene 102799 103389 591.0 + 0 ENSG00000282463.1 processed_pseudogene AC216130.2 2 OTTHUMG00000190466.1 overlapping_locus +3139 KI270806.1 HAVANA gene 95165 144953 7561.0 + 0 ENSG00000275723.4 protein_coding NAPEPLD 2 OTTHUMG00000190465.2 overlapping_locus +3140 KI270806.1 HAVANA gene 155119 156065 947.0 + 0 ENSG00000282789.1 processed_pseudogene CRYZP1 2 OTTHUMG00000190468.1 +3141 KI270806.1 HAVANA gene 144965 158099 3469.0 - 0 ENSG00000282813.1 protein_coding ARMC10 2 OTTHUMG00000190467.2 +3142 KI270807.1 HAVANA gene 43484 44930 613.0 - 0 ENSG00000282507.1 lincRNA AC236756.1 2 OTTHUMG00000190542.1 +3143 KI270808.1 ENSEMBL gene 171301 171511 211.0 + 0 ENSG00000277205.1 snoRNA RF00012 3 +3144 KI270808.1 HAVANA gene 2415 204593 6695.0 + 0 ENSG00000278728.2 protein_coding CNTNAP2 2 OTTHUMG00000190541.1 ncRNA_host,overlapping_locus +3145 KI270808.1 ENSEMBL gene 221904 222172 269.0 + 0 ENSG00000274906.1 misc_RNA RF00017 3 +3146 KI270808.1 HAVANA gene 229381 229894 514.0 + 0 ENSG00000281999.1 unprocessed_pseudogene AC083849.2 2 OTTHUMG00000190539.1 +3147 KI270808.1 HAVANA gene 224594 261110 1677.0 - 0 ENSG00000282044.1 lincRNA AC083849.3 2 OTTHUMG00000190538.1 +3148 KI270809.1 HAVANA gene 286 5014 1708.0 + 0 ENSG00000282379.1 protein_coding DTX2 2 OTTHUMG00000190455.1 +3149 KI270809.1 HAVANA gene 9515 14763 1815.0 + 0 ENSG00000276184.4 protein_coding UPK3B 2 OTTHUMG00000190456.1 overlapping_locus +3150 KI270809.1 HAVANA gene 14646 19593 188.0 + 0 ENSG00000282349.1 unprocessed_pseudogene AC237298.1 2 OTTHUMG00000190457.1 overlapping_locus +3151 KI270809.1 HAVANA gene 18213 28359 3617.0 - 0 ENSG00000281950.1 protein_coding SPDYE16 2 OTTHUMG00000190458.2 +3152 KI270809.1 HAVANA gene 96821 114096 1861.0 - 0 ENSG00000276464.4 protein_coding POMZP3 2 OTTHUMG00000190460.1 +3153 KI270809.1 HAVANA gene 36194 114817 3110.0 + 0 ENSG00000282254.1 transcribed_unprocessed_pseudogene AC004980.5 2 OTTHUMG00000190459.1 +3154 KI270809.1 HAVANA gene 137236 137732 497.0 - 0 ENSG00000282364.1 processed_pseudogene AC004980.6 2 OTTHUMG00000190461.1 +3155 KI270809.1 HAVANA gene 145526 183908 373.0 - 0 ENSG00000282580.1 lincRNA AC004980.7 2 OTTHUMG00000190567.1 +3156 KI270810.1 HAVANA gene 4306 9957 1956.0 - 0 ENSG00000282114.1 processed_transcript LINC00824 2 OTTHUMG00000190640.1 +3157 KI270810.1 HAVANA gene 353448 369558 766.0 - 0 ENSG00000282113.1 lincRNA AC068570.1 2 OTTHUMG00000190639.1 +3158 KI270811.1 HAVANA gene 15250 21823 3049.0 - 0 ENSG00000282734.1 lincRNA AF067845.6 2 OTTHUMG00000190568.1 +3159 KI270811.1 HAVANA gene 87864 89049 1186.0 - 0 ENSG00000281953.1 lincRNA AF067845.3 2 OTTHUMG00000190569.1 +3160 KI270811.1 HAVANA gene 96749 99189 480.0 + 0 ENSG00000282141.1 lincRNA AC131901.2 2 OTTHUMG00000190595.1 overlapping_locus +3161 KI270811.1 HAVANA gene 92901 100278 437.0 + 0 ENSG00000281997.1 lincRNA AC131901.1 2 OTTHUMG00000190594.1 overlapping_locus +3162 KI270811.1 HAVANA gene 271041 271270 230.0 - 0 ENSG00000282001.1 antisense DLGAP2-AS1 2 OTTHUMG00000190571.1 +3163 KI270811.1 HAVANA gene 206898 271426 1336.0 + 0 ENSG00000282152.1 protein_coding DLGAP2 2 OTTHUMG00000190570.2 +3164 KI270812.1 HAVANA gene 160047 160994 948.0 + 0 ENSG00000282261.1 lincRNA AC129915.1 2 OTTHUMG00000190597.1 overlapping_locus +3165 KI270812.1 HAVANA gene 246172 246356 185.0 + 0 ENSG00000282428.1 lincRNA AC129915.2 2 OTTHUMG00000190598.1 overlapping_locus +3166 KI270812.1 HAVANA gene 21557 279067 2597.0 + 0 ENSG00000282472.1 antisense AC026950.1 2 OTTHUMG00000190596.1 overlapping_locus +3167 KI270813.1 HAVANA gene 24049 25641 1593.0 + 0 ENSG00000277802.2 unprocessed_pseudogene AF252830.1 2 OTTHUMG00000189973.1 +3168 KI270813.1 HAVANA gene 26105 27285 1181.0 + 0 ENSG00000281561.1 unprocessed_pseudogene AF252830.2 2 OTTHUMG00000189974.1 +3169 KI270813.1 HAVANA gene 9695 39621 2631.0 - 0 ENSG00000280677.1 lincRNA FAM66B 2 OTTHUMG00000189972.1 +3170 KI270813.1 HAVANA gene 55850 60219 252.0 + 0 ENSG00000276378.2 unprocessed_pseudogene DEFB108C 2 OTTHUMG00000189976.1 +3171 KI270813.1 HAVANA gene 39796 68296 3647.0 - 0 ENSG00000274195.2 protein_coding ZNF705G 2 OTTHUMG00000189975.1 +3172 KI270813.1 HAVANA gene 97913 99936 332.0 - 0 ENSG00000275444.2 protein_coding DEFB4B 2 OTTHUMG00000189977.1 +3173 KI270813.1 HAVANA gene 102063 103618 1556.0 + 0 ENSG00000282496.1 processed_pseudogene HSPD1P3 2 OTTHUMG00000190615.1 +3174 KI270813.1 HAVANA gene 111959 113419 518.0 - 0 ENSG00000273641.2 protein_coding DEFB103B 2 OTTHUMG00000189978.1 +3175 KI270813.1 HAVANA gene 125758 146784 1973.0 - 0 ENSG00000274405.4 protein_coding SPAG11B 2 OTTHUMG00000189979.1 +3176 KI270813.1 HAVANA gene 153417 158192 281.0 - 0 ENSG00000277006.2 protein_coding DEFB104B 2 OTTHUMG00000189980.1 +3177 KI270813.1 HAVANA gene 165611 169505 316.0 - 0 ENSG00000275794.2 protein_coding DEFB106B 2 OTTHUMG00000189981.1 +3178 KI270813.1 HAVANA gene 170774 172696 331.0 + 0 ENSG00000274729.1 protein_coding DEFB105B 2 OTTHUMG00000189982.1 +3179 KI270813.1 HAVANA gene 178949 192414 389.0 + 0 ENSG00000277530.1 protein_coding DEFB107B 2 OTTHUMG00000189983.1 +3180 KI270813.1 HAVANA gene 222731 225553 1587.0 + 0 ENSG00000274540.2 protein_coding PRR23D1 2 OTTHUMG00000189984.1 +3181 KI270813.1 HAVANA gene 232156 235165 1394.0 - 0 ENSG00000280471.1 unprocessed_pseudogene FAM90A6P 2 OTTHUMG00000189985.1 +3182 KI270813.1 HAVANA gene 239803 242815 1395.0 - 0 ENSG00000281040.1 unprocessed_pseudogene AC134684.3 2 OTTHUMG00000189986.1 +3183 KI270813.1 HAVANA gene 247453 250463 1396.0 - 0 ENSG00000281150.1 unprocessed_pseudogene FAM90A21P 2 OTTHUMG00000189987.1 +3184 KI270813.1 HAVANA gene 255098 258109 1395.0 - 0 ENSG00000281407.1 unprocessed_pseudogene AC134684.4 2 OTTHUMG00000189988.1 +3185 KI270813.1 HAVANA gene 262747 265756 1395.0 - 0 ENSG00000281862.1 unprocessed_pseudogene AC134684.5 2 OTTHUMG00000189989.1 +3186 KI270813.1 HAVANA gene 275109 276019 911.0 + 0 ENSG00000280960.1 unprocessed_pseudogene OR7E157P 2 OTTHUMG00000189990.1 +3187 KI270813.1 HAVANA gene 284107 284370 264.0 + 0 ENSG00000280939.1 processed_pseudogene AC134684.2 2 OTTHUMG00000189991.1 +3188 KI270814.1 HAVANA gene 20240 78708 3844.0 + 0 ENSG00000282395.1 lincRNA LINC01606 2 OTTHUMG00000190625.1 overlapping_locus +3189 KI270814.1 HAVANA gene 78471 78955 324.0 + 0 ENSG00000282061.1 processed_pseudogene AC025674.4 2 OTTHUMG00000190626.1 overlapping_locus +3190 KI270814.1 HAVANA gene 99640 105027 2971.0 + 0 ENSG00000282027.1 lincRNA AC025674.3 2 OTTHUMG00000190627.1 +3191 KI270814.1 HAVANA gene 117957 123145 1875.0 + 0 ENSG00000282106.1 lincRNA LINC00588 2 OTTHUMG00000190628.1 +3192 KI270814.1 ENSEMBL gene 127966 128063 98.0 + 0 ENSG00000278101.1 snRNA RF00026 3 +3193 KI270815.1 HAVANA gene 73097 73668 572.0 - 0 ENSG00000282524.1 lincRNA AF186192.5 2 OTTHUMG00000190691.1 +3194 KI270815.1 HAVANA gene 74836 83000 1680.0 + 0 ENSG00000282619.1 transcribed_unprocessed_pseudogene AF186192.6 2 OTTHUMG00000190692.1 +3195 KI270815.1 HAVANA gene 95390 130900 5222.0 - 0 ENSG00000278062.2 protein_coding ZNF251 2 OTTHUMG00000190693.1 +3196 KI270815.1 HAVANA gene 110275 132244 545.0 + 0 ENSG00000282146.1 antisense AF186192.4 2 OTTHUMG00000190694.1 +3197 KI270816.1 HAVANA gene 26297 31493 1593.0 - 0 ENSG00000282684.1 protein_coding ZC3H3 2 OTTHUMG00000190665.2 +3198 KI270816.1 ENSEMBL gene 32150 32438 289.0 + 0 ENSG00000277845.1 misc_RNA RN7SKP175 3 +3199 KI270816.1 HAVANA gene 32150 32440 291.0 + 0 ENSG00000282192.1 antisense AC067930.8 2 OTTHUMG00000190666.1 ncRNA_host +3200 KI270816.1 HAVANA gene 43247 53102 5116.0 + 0 ENSG00000278718.3 protein_coding GSDMD 2 OTTHUMG00000190667.2 +3201 KI270816.1 HAVANA gene 56227 63011 4408.0 - 0 ENSG00000277781.2 protein_coding MROH6 2 OTTHUMG00000190668.2 +3202 KI270816.1 HAVANA gene 63530 67437 1173.0 + 0 ENSG00000282613.1 antisense AC067930.9 2 OTTHUMG00000190669.1 +3203 KI270816.1 HAVANA gene 64825 68689 2845.0 - 0 ENSG00000278488.2 protein_coding NAPRT 2 OTTHUMG00000190670.2 +3204 KI270816.1 HAVANA gene 68398 73345 4948.0 + 0 ENSG00000282189.1 processed_transcript AC067930.7 2 OTTHUMG00000190671.1 overlapping_locus +3205 KI270816.1 HAVANA gene 69737 87784 8746.0 - 0 ENSG00000273594.4 protein_coding EEF1D 2 OTTHUMG00000190672.2 +3206 KI270816.1 HAVANA gene 87875 93264 5390.0 + 0 ENSG00000278016.2 protein_coding TIGD5 2 OTTHUMG00000190673.1 +3207 KI270816.1 HAVANA gene 93953 99813 3244.0 - 0 ENSG00000276657.2 protein_coding PYCR3 2 OTTHUMG00000190674.2 +3208 KI270816.1 HAVANA gene 102658 108088 3622.0 - 0 ENSG00000278243.2 protein_coding TSTA3 2 OTTHUMG00000190675.2 +3209 KI270816.1 HAVANA gene 111843 131885 7144.0 + 0 ENSG00000276340.4 protein_coding ZNF623 2 OTTHUMG00000190676.1 +3210 KI270816.1 HAVANA gene 173201 175460 1963.0 + 0 ENSG00000277126.2 antisense BREA2 2 OTTHUMG00000190678.1 overlapping_locus +3211 KI270816.1 HAVANA gene 183741 185156 1320.0 - 0 ENSG00000278749.1 protein_coding CCDC166 2 OTTHUMG00000190679.2 +3212 KI270816.1 HAVANA gene 186054 190631 374.0 - 0 ENSG00000282538.1 antisense AC105219.4 2 OTTHUMG00000190680.1 +3213 KI270816.1 HAVANA gene 161499 190945 6327.0 + 0 ENSG00000274352.4 protein_coding ZNF707 2 OTTHUMG00000190677.2 overlapping_locus +3214 KI270816.1 HAVANA gene 195293 195938 299.0 - 0 ENSG00000282617.1 antisense AC105219.5 2 OTTHUMG00000190682.1 +3215 KI270816.1 HAVANA gene 193306 199505 3056.0 + 0 ENSG00000274205.4 protein_coding MAPK15 2 OTTHUMG00000190681.1 +3216 KI270816.1 HAVANA gene 200980 210848 5654.0 - 0 ENSG00000273889.2 protein_coding FAM83H 2 OTTHUMG00000190683.1 +3217 KI270816.1 HAVANA gene 211187 223384 5612.0 + 0 ENSG00000282685.1 processed_transcript FAM83H-AS1 2 OTTHUMG00000190684.1 +3218 KI270816.1 HAVANA gene 265967 267506 949.0 + 0 ENSG00000282519.1 antisense IQANK1 2 OTTHUMG00000190685.1 +3219 KI270816.1 HAVANA gene 267967 292426 6192.0 - 0 ENSG00000274287.4 protein_coding SCRIB 2 OTTHUMG00000190686.2 +3220 KI270817.1 HAVANA gene 2773 8725 847.0 - 0 ENSG00000282681.1 lincRNA LY6E-DT 2 OTTHUMG00000190649.1 +3221 KI270817.1 HAVANA gene 8270 14120 2640.0 + 0 ENSG00000278032.2 protein_coding LY6E 2 OTTHUMG00000190650.1 +3222 KI270817.1 HAVANA gene 47347 48104 438.0 - 0 ENSG00000282669.1 processed_pseudogene AK3P2 2 OTTHUMG00000190652.1 +3223 KI270817.1 HAVANA gene 29497 50230 2929.0 + 0 ENSG00000278812.2 processed_transcript C8orf31 2 OTTHUMG00000190651.1 +3224 KI270817.1 HAVANA gene 56204 56891 344.0 - 0 ENSG00000282683.1 processed_pseudogene AC236721.1 2 OTTHUMG00000190653.1 +3225 KI270817.1 HAVANA gene 76023 78566 987.0 + 0 ENSG00000282693.1 protein_coding LY6L 2 OTTHUMG00000190654.1 +3226 KI270817.1 HAVANA gene 153499 156296 1881.0 - 0 ENSG00000274488.4 protein_coding LY6H 2 OTTHUMG00000190655.1 +3227 KI270818.1 HAVANA gene 6779 7468 316.0 - 0 ENSG00000282347.1 sense_intronic AC100797.3 2 OTTHUMG00000190610.1 overlapping_locus +3228 KI270818.1 HAVANA gene 12731 19697 423.0 - 0 ENSG00000282665.1 protein_coding ERICH1 2 OTTHUMG00000190611.3 overlapping_locus +3229 KI270818.1 HAVANA gene 20139 21965 1827.0 + 0 ENSG00000282245.1 lincRNA AC100797.2 2 OTTHUMG00000190613.1 overlapping_locus +3230 KI270818.1 HAVANA gene 19242 106178 1080.0 + 0 ENSG00000282103.1 antisense DLGAP2 2 OTTHUMG00000190612.1 overlapping_locus +3231 KI270819.1 HAVANA gene 7103 11175 812.0 + 0 ENSG00000282594.1 antisense LINC01300 2 OTTHUMG00000190641.1 +3232 KI270819.1 HAVANA gene 19957 21919 1963.0 - 0 ENSG00000282573.1 lincRNA AC100803.5 2 OTTHUMG00000190642.1 +3233 KI270819.1 HAVANA gene 23054 33821 1515.0 - 0 ENSG00000275181.2 protein_coding GPR20 2 OTTHUMG00000190643.1 +3234 KI270819.1 HAVANA gene 58545 104910 3545.0 + 0 ENSG00000275575.4 protein_coding PTP4A3 2 OTTHUMG00000190644.2 +3235 KI270819.1 HAVANA gene 109784 110410 438.0 + 0 ENSG00000282477.1 antisense AC100803.4 2 OTTHUMG00000190646.1 +3236 KI270819.1 ENSEMBL gene 119931 120005 75.0 + 0 ENSG00000276275.1 snoRNA RF01161 3 +3237 KI270819.1 HAVANA gene 106285 122205 1609.0 - 0 ENSG00000282181.1 polymorphic_pseudogene MROH5 2 OTTHUMG00000190645.1 +3238 KI270819.1 HAVANA gene 131531 132487 957.0 + 0 ENSG00000282315.1 processed_pseudogene HNRNPA1P38 2 OTTHUMG00000190647.1 +3239 KI270821.1 HAVANA gene 30827 31292 466.0 + 0 ENSG00000282101.1 sense_intronic AC019257.4 2 OTTHUMG00000190631.1 +3240 KI270821.1 HAVANA gene 118123 121592 3470.0 - 0 ENSG00000282405.1 antisense AC019257.6 2 OTTHUMG00000190632.1 +3241 KI270821.1 HAVANA gene 7352 142017 10973.0 + 0 ENSG00000274726.4 protein_coding ARHGEF10 2 OTTHUMG00000190629.1 +3242 KI270821.1 HAVANA gene 155946 158013 804.0 - 0 ENSG00000282053.1 lincRNA AC019257.3 2 OTTHUMG00000190636.1 +3243 KI270821.1 HAVANA gene 158194 158690 497.0 + 0 ENSG00000282260.1 lincRNA AC019257.5 2 OTTHUMG00000190635.1 overlapping_locus +3244 KI270821.1 HAVANA gene 154773 159854 815.0 + 0 ENSG00000282334.1 lincRNA KBTBD11-OT1 2 OTTHUMG00000190633.1 +3245 KI270821.1 HAVANA gene 157254 190312 6710.0 + 0 ENSG00000273645.2 protein_coding KBTBD11 2 OTTHUMG00000190634.1 overlapping_locus +3246 KI270821.1 HAVANA gene 216860 222723 637.0 + 0 ENSG00000282191.1 lincRNA AC125453.1 2 OTTHUMG00000190637.1 +3247 KI270821.1 HAVANA gene 228365 348679 7056.0 + 0 ENSG00000274137.2 protein_coding MYOM2 2 OTTHUMG00000190638.2 +3248 KI270821.1 HAVANA gene 382433 385193 2761.0 + 0 ENSG00000282484.1 lincRNA AC022257.1 2 OTTHUMG00000190657.1 +3249 KI270821.1 HAVANA gene 661562 680263 512.0 - 0 ENSG00000282263.1 lincRNA AC133633.2 2 OTTHUMG00000190658.1 +3250 KI270821.1 HAVANA gene 686694 689878 559.0 + 0 ENSG00000281936.1 lincRNA AC133633.1 2 OTTHUMG00000190659.1 +3251 KI270821.1 HAVANA gene 727670 791038 1753.0 - 0 ENSG00000282397.1 lincRNA AC104021.1 2 OTTHUMG00000190660.2 +3252 KI270821.1 HAVANA gene 832577 834484 1908.0 + 0 ENSG00000281980.1 lincRNA AC246817.3 2 OTTHUMG00000190688.1 +3253 KI270821.1 HAVANA gene 834145 896517 1675.0 - 0 ENSG00000282435.1 lincRNA AC246817.4 2 OTTHUMG00000190661.2 +3254 KI270821.1 HAVANA gene 895384 976500 368.0 + 0 ENSG00000282661.1 lincRNA AC246817.5 2 OTTHUMG00000190662.1 +3255 KI270822.1 HAVANA gene 7546 10827 1606.0 + 0 ENSG00000282230.1 protein_coding ADAM9 2 OTTHUMG00000190616.1 +3256 KI270822.1 HAVANA gene 63221 64384 1164.0 - 0 ENSG00000282698.1 processed_pseudogene RPL3P10 2 OTTHUMG00000190618.1 +3257 KI270822.1 HAVANA gene 12673 190626 10049.0 + 0 ENSG00000275594.4 protein_coding ADAM32 2 OTTHUMG00000190617.2 +3258 KI270822.1 HAVANA gene 215614 216148 535.0 - 0 ENSG00000282490.1 processed_pseudogene AC245594.2 2 OTTHUMG00000190619.1 +3259 KI270822.1 HAVANA gene 220302 251785 1750.0 + 0 ENSG00000282250.1 transcribed_unitary_pseudogene AC245594.1 2 OTTHUMG00000190620.1 +3260 KI270822.1 HAVANA gene 335123 480684 3826.0 + 0 ENSG00000278548.4 protein_coding ADAM18 2 OTTHUMG00000190621.1 +3261 KI270822.1 HAVANA gene 494374 588925 2905.0 - 0 ENSG00000276286.4 protein_coding ADAM2 2 OTTHUMG00000190622.1 +3262 KI270822.1 HAVANA gene 610855 611167 313.0 + 0 ENSG00000282680.1 processed_pseudogene AP005902.4 2 OTTHUMG00000190623.1 +3263 KI270822.1 HAVANA gene 618072 618448 186.0 - 0 ENSG00000282382.1 processed_pseudogene AP005902.3 2 OTTHUMG00000190624.1 +3264 KI270823.1 HAVANA gene 26871 27885 1015.0 + 0 ENSG00000282008.1 processed_pseudogene GAPDHP26 2 OTTHUMG00000190700.1 +3265 KI270823.1 HAVANA gene 176639 177124 486.0 - 0 ENSG00000282376.1 processed_pseudogene AL161631.2 2 OTTHUMG00000190702.1 +3266 KI270823.1 ENSEMBL gene 373680 373736 57.0 + 0 ENSG00000276714.1 snoRNA RF00322 3 +3267 KI270823.1 HAVANA gene 79912 376338 3669.0 + 0 ENSG00000276539.4 protein_coding PLPPR1 2 OTTHUMG00000190701.2 ncRNA_host +3268 KI270823.1 HAVANA gene 385287 390576 1225.0 - 0 ENSG00000282259.1 unitary_pseudogene AC216089.2 2 OTTHUMG00000190703.1 +3269 KI270823.1 HAVANA gene 407700 408078 379.0 - 0 ENSG00000282406.1 processed_pseudogene TRMT112P4 2 OTTHUMG00000190704.1 +3270 KI270823.1 HAVANA gene 419728 422034 1580.0 + 0 ENSG00000282159.1 processed_pseudogene AC216089.1 2 OTTHUMG00000190705.1 +3271 KI270823.1 HAVANA gene 422296 432266 2252.0 - 0 ENSG00000276559.2 protein_coding BAAT 2 OTTHUMG00000190706.1 +3272 KI270823.1 HAVANA gene 436135 437394 921.0 - 0 ENSG00000282345.1 processed_pseudogene FYTTD1P1 2 OTTHUMG00000190707.1 +3273 KI270824.1 HAVANA gene 46071 46310 240.0 - 0 ENSG00000282764.1 processed_pseudogene KSR1P1 2 OTTHUMG00000190708.1 +3274 KI270824.1 HAVANA gene 83193 83645 329.0 + 0 ENSG00000282178.1 IG_V_pseudogene IGKV1OR10-1 2 OTTHUMG00000190709.1 +3275 KI270824.1 HAVANA gene 125278 159399 563.0 + 0 ENSG00000282271.1 transcribed_unprocessed_pseudogene AL031601.3 2 OTTHUMG00000190715.1 +3276 KI270824.1 HAVANA gene 162291 164376 2086.0 - 0 ENSG00000282372.1 processed_pseudogene PABPC1P8 2 OTTHUMG00000190716.1 +3277 KI270825.1 ENSEMBL gene 15643 15747 105.0 - 0 ENSG00000276274.1 snRNA RNU6-1266P 3 +3278 KI270825.1 HAVANA gene 19029 20568 1540.0 - 0 ENSG00000282534.1 processed_pseudogene IMPDH1P5 2 OTTHUMG00000190717.1 +3279 KI270825.1 HAVANA gene 21558 31868 3536.0 + 0 ENSG00000282233.1 antisense AL450306.2 2 OTTHUMG00000190718.1 +3280 KI270825.1 HAVANA gene 105567 108302 1922.0 + 0 ENSG00000282690.1 antisense AL391421.2 2 OTTHUMG00000190720.1 +3281 KI270825.1 ENSEMBL gene 150963 151237 275.0 - 0 ENSG00000276516.1 misc_RNA RN7SL284P 3 +3282 KI270825.1 HAVANA gene 29483 165218 10271.0 - 0 ENSG00000274429.2 protein_coding DLG5 2 OTTHUMG00000190719.1 ncRNA_host +3283 KI270825.1 HAVANA gene 166064 168516 2445.0 + 0 ENSG00000282770.1 processed_transcript DLG5-AS1 2 OTTHUMG00000190721.1 +3284 KI270829.1 HAVANA gene 4565 5275 711.0 + 0 ENSG00000281427.1 processed_pseudogene AC044810.6 2 OTTHUMG00000189784.1 +3285 KI270829.1 HAVANA gene 16773 17841 1069.0 - 0 ENSG00000276025.2 protein_coding OR5P2 2 OTTHUMG00000189785.1 overlapping_locus +3286 KI270829.1 HAVANA gene 45905 46840 936.0 - 0 ENSG00000278253.1 protein_coding OR5P3 2 OTTHUMG00000189787.2 overlapping_locus +3287 KI270829.1 HAVANA gene 80219 81145 927.0 + 0 ENSG00000280497.1 unprocessed_pseudogene OR5E1P 2 OTTHUMG00000189788.1 +3288 KI270829.1 ENSEMBL gene 120683 120780 98.0 - 0 ENSG00000278379.1 snRNA RF00026 3 +3289 KI270829.1 HAVANA gene 82267 137456 2866.0 - 0 ENSG00000281367.2 lincRNA AC044810.5 2 OTTHUMG00000189789.2 ncRNA_host +3290 KI270829.1 HAVANA gene 159134 160163 1030.0 - 0 ENSG00000276451.2 polymorphic_pseudogene OR10A6 2 OTTHUMG00000189791.1 +3291 KI270829.1 HAVANA gene 170035 171095 1061.0 - 0 ENSG00000273953.1 protein_coding OR10A3 2 OTTHUMG00000189792.1 +3292 KI270829.1 HAVANA gene 190925 196927 2531.0 - 0 ENSG00000276780.2 protein_coding NLRP10 2 OTTHUMG00000189793.3 +3293 KI270830.1 HAVANA gene 36281 54157 4616.0 - 0 ENSG00000273793.3 protein_coding DUSP8 2 OTTHUMG00000190035.1 +3294 KI270830.1 HAVANA gene 66579 67520 942.0 - 0 ENSG00000278210.1 protein_coding KRTAP5-1 2 OTTHUMG00000190037.1 +3295 KI270830.1 ENSEMBL gene 62729 68226 2175.0 + 0 ENSG00000276565.1 protein_coding AP006285.3 3 +3296 KI270830.1 HAVANA gene 79414 80531 1118.0 - 0 ENSG00000278489.2 protein_coding KRTAP5-2 2 OTTHUMG00000190038.1 +3297 KI270830.1 HAVANA gene 53590 81421 2931.0 + 0 ENSG00000281801.1 antisense KRTAP5-AS1 2 OTTHUMG00000190036.1 +3298 KI270830.1 HAVANA gene 89802 90700 899.0 - 0 ENSG00000275920.1 protein_coding KRTAP5-3 2 OTTHUMG00000190039.1 +3299 KI270830.1 HAVANA gene 103195 104375 1181.0 - 0 ENSG00000277068.2 protein_coding KRTAP5-4 2 OTTHUMG00000190040.1 +3300 KI270830.1 HAVANA gene 112012 112944 933.0 + 0 ENSG00000277291.2 protein_coding KRTAP5-5 2 OTTHUMG00000190041.1 +3301 KI270830.1 HAVANA gene 144821 145580 588.0 - 0 ENSG00000281645.1 lincRNA AP006285.5 2 OTTHUMG00000190043.1 +3302 KI270830.1 HAVANA gene 147834 150093 2158.0 + 0 ENSG00000281733.1 lincRNA FAM99A 2 OTTHUMG00000190044.1 +3303 KI270830.1 HAVANA gene 165506 167866 1067.0 - 0 ENSG00000281783.1 antisense FAM99B 2 OTTHUMG00000190045.1 +3304 KI270830.1 HAVANA gene 170534 171293 587.0 + 0 ENSG00000281240.1 lincRNA AP006285.4 2 OTTHUMG00000190046.1 +3305 KI270831.1 HAVANA gene 3543 3764 222.0 + 0 ENSG00000282441.1 processed_pseudogene COX6CP18 2 OTTHUMG00000190748.1 overlapping_locus +3306 KI270831.1 HAVANA gene 1031 81275 1863.0 + 0 ENSG00000282076.1 protein_coding KCNQ1 2 OTTHUMG00000190747.1 overlapping_locus +3307 KI270831.1 HAVANA gene 72299 93726 1084.0 - 0 ENSG00000282343.1 antisense KCNQ1-AS1 2 OTTHUMG00000190749.1 +3308 KI270831.1 ENSEMBL gene 103610 103671 62.0 + 0 ENSG00000275660.1 misc_RNA AC001228.1 3 +3309 KI270831.1 HAVANA gene 102234 104278 1065.0 + 0 ENSG00000278855.2 antisense KCNQ1DN 2 OTTHUMG00000190750.1 ncRNA_host +3310 KI270831.1 HAVANA gene 115392 118091 2407.0 - 0 ENSG00000273707.4 protein_coding CDKN1C 2 OTTHUMG00000190751.1 +3311 KI270831.1 HAVANA gene 119991 135956 1783.0 - 0 ENSG00000274454.4 antisense SLC22A18AS 2 OTTHUMG00000190752.1 +3312 KI270831.1 HAVANA gene 131932 157362 5287.0 + 0 ENSG00000276130.4 protein_coding SLC22A18 2 OTTHUMG00000190753.1 +3313 KI270831.1 HAVANA gene 160388 161570 955.0 - 0 ENSG00000274538.2 protein_coding PHLDA2 2 OTTHUMG00000190754.1 +3314 KI270831.1 ENSEMBL gene 194823 194945 123.0 - 0 ENSG00000273525.1 snoRNA SNORA54 3 +3315 KI270831.1 HAVANA gene 220933 222414 1482.0 + 0 ENSG00000282438.1 antisense AC001228.2 2 OTTHUMG00000190756.1 +3316 KI270831.1 HAVANA gene 175479 223447 5199.0 - 0 ENSG00000273562.4 protein_coding NAP1L4 2 OTTHUMG00000190755.2 ncRNA_host +3317 KI270831.1 HAVANA gene 260066 272285 2683.0 + 0 ENSG00000282355.1 antisense CARS-AS1 2 OTTHUMG00000190758.1 +3318 KI270831.1 ENSEMBL gene 279389 279551 163.0 - 0 ENSG00000275205.1 snRNA RF00003 3 +3319 KI270831.1 HAVANA gene 231984 288645 12045.0 - 0 ENSG00000278191.4 protein_coding CARS 2 OTTHUMG00000190757.1 ncRNA_host +3320 KI270832.1 HAVANA gene 3536 21040 3083.0 + 0 ENSG00000282367.1 protein_coding PTDSS2 2 OTTHUMG00000190722.1 +3321 KI270832.1 HAVANA gene 24153 36941 9023.0 - 0 ENSG00000276230.4 protein_coding RNH1 2 OTTHUMG00000190724.2 +3322 KI270832.1 HAVANA gene 58548 61902 3149.0 + 0 ENSG00000282464.1 antisense AC137894.2 2 OTTHUMG00000190725.1 +3323 KI270832.1 HAVANA gene 61883 66928 1854.0 - 0 ENSG00000276536.4 protein_coding HRAS 2 OTTHUMG00000190726.3 +3324 KI270832.1 HAVANA gene 67168 84556 2769.0 + 0 ENSG00000273831.2 protein_coding LRRC56 2 OTTHUMG00000190727.1 +3325 KI270832.1 HAVANA gene 87254 89762 2414.0 + 0 ENSG00000282005.1 antisense AC138374.1 2 OTTHUMG00000190729.1 +3326 KI270832.1 HAVANA gene 84495 90434 2934.0 - 0 ENSG00000275873.2 protein_coding LMNTD2 2 OTTHUMG00000190728.2 +3327 KI270832.1 HAVANA gene 90059 93677 2492.0 + 0 ENSG00000273859.4 protein_coding RASSF7 2 OTTHUMG00000190730.2 +3328 KI270832.1 HAVANA gene 95315 98112 2321.0 - 0 ENSG00000282810.1 lincRNA MIR210HG 2 OTTHUMG00000190731.1 +3329 KI270832.1 HAVANA gene 106142 142115 5769.0 + 0 ENSG00000274780.2 protein_coding PHRF1 2 OTTHUMG00000190733.1 +3330 KI270832.1 HAVANA gene 142446 145898 2628.0 - 0 ENSG00000276561.4 protein_coding IRF7 2 OTTHUMG00000190734.1 +3331 KI270832.1 HAVANA gene 146464 155977 3873.0 - 0 ENSG00000273572.4 protein_coding CDHR5 2 OTTHUMG00000190735.2 +3332 KI270832.1 HAVANA gene 156330 157042 366.0 - 0 ENSG00000274473.2 protein_coding SCT 2 OTTHUMG00000190736.2 +3333 KI270832.1 HAVANA gene 167166 170577 1477.0 + 0 ENSG00000276825.2 protein_coding DRD4 2 OTTHUMG00000190737.1 +3334 KI270832.1 HAVANA gene 176113 206708 1503.0 - 0 ENSG00000282712.1 protein_coding DEAF1 2 OTTHUMG00000190738.3 +3335 KI270832.1 HAVANA gene 197845 209843 912.0 + 0 ENSG00000282598.1 antisense AC138374.2 2 OTTHUMG00000190743.1 +3336 KI270833.1 HAVANA gene 27921 28632 712.0 - 0 ENSG00000282480.1 TEC AC127071.3 2 OTTHUMG00000190812.1 +3337 KI270833.1 HAVANA gene 14812 49543 5258.0 + 0 ENSG00000275051.2 protein_coding PIWIL1 2 OTTHUMG00000190811.2 +3338 KI270833.1 HAVANA gene 60578 61104 527.0 + 0 ENSG00000282766.1 TEC AC217627.1 2 OTTHUMG00000190813.1 +3339 KI270834.1 HAVANA gene 100599 108528 4409.0 - 0 ENSG00000281954.1 antisense AC208069.1 2 OTTHUMG00000190809.1 +3340 KI270834.1 HAVANA gene 179 109258 11442.0 + 0 ENSG00000281935.1 protein_coding DNAH10 2 OTTHUMG00000190807.1 +3341 KI270834.1 HAVANA gene 92215 119498 6589.0 - 0 ENSG00000275035.2 protein_coding CCDC92 2 OTTHUMG00000190808.2 overlapping_locus +3342 KI270835.1 HAVANA gene 173 96948 5463.0 - 0 ENSG00000275428.2 protein_coding AC024940.6 2 OTTHUMG00000190798.1 +3343 KI270835.1 HAVANA gene 135234 135479 246.0 + 0 ENSG00000282391.1 processed_pseudogene AC024940.8 2 OTTHUMG00000190799.1 +3344 KI270835.1 HAVANA gene 142786 143391 606.0 - 0 ENSG00000282388.1 processed_pseudogene AC024940.7 2 OTTHUMG00000190800.1 +3345 KI270835.1 HAVANA gene 145155 145239 85.0 - 0 ENSG00000282329.1 processed_pseudogene MREGP1 2 OTTHUMG00000190801.1 +3346 KI270835.1 HAVANA gene 202411 202823 316.0 + 0 ENSG00000282551.1 processed_pseudogene AC024940.9 2 OTTHUMG00000190803.1 +3347 KI270835.1 HAVANA gene 215110 216623 1514.0 + 0 ENSG00000282176.1 antisense FLJ13224 2 OTTHUMG00000190804.1 +3348 KI270835.1 HAVANA gene 171378 217852 5748.0 - 0 ENSG00000276371.2 protein_coding SINHCAF 2 OTTHUMG00000190802.2 overlapping_locus +3349 KI270837.1 HAVANA gene 20913 25493 1985.0 + 0 ENSG00000275517.4 protein_coding PRB1 2 OTTHUMG00000189696.1 +3350 KI270838.1 HAVANA gene 14476 18126 2829.0 + 0 ENSG00000282647.1 lincRNA LINC01070 2 OTTHUMG00000190824.1 +3351 KI270838.1 HAVANA gene 114463 122734 6872.0 + 0 ENSG00000282706.1 lincRNA LINC01043 2 OTTHUMG00000190823.1 +3352 KI270838.1 HAVANA gene 123543 132195 657.0 - 0 ENSG00000282737.1 lincRNA LINC01044 2 OTTHUMG00000190825.1 +3353 KI270838.1 HAVANA gene 177289 235659 1114.0 + 0 ENSG00000275865.2 protein_coding SPACA7 2 OTTHUMG00000190826.2 +3354 KI270838.1 HAVANA gene 285979 305684 1878.0 - 0 ENSG00000282003.1 protein_coding TUBGCP3 2 OTTHUMG00000190827.1 +3355 KI270840.1 HAVANA gene 26065 26554 490.0 - 0 ENSG00000282037.1 processed_pseudogene GXYLT1P1 2 OTTHUMG00000190815.1 +3356 KI270840.1 HAVANA gene 28356 29064 709.0 + 0 ENSG00000282611.1 processed_pseudogene CNN2P12 2 OTTHUMG00000190816.1 +3357 KI270840.1 HAVANA gene 35730 36546 817.0 + 0 ENSG00000282352.1 processed_pseudogene ZNF965P 2 OTTHUMG00000190817.1 +3358 KI270840.1 HAVANA gene 43380 44368 481.0 - 0 ENSG00000282782.1 unprocessed_pseudogene CYP4F34P 2 OTTHUMG00000190818.1 +3359 KI270840.1 HAVANA gene 108929 109668 740.0 - 0 ENSG00000282677.1 processed_pseudogene SNX18P26 2 OTTHUMG00000190819.1 +3360 KI270840.1 HAVANA gene 111480 111698 219.0 + 0 ENSG00000282536.1 processed_pseudogene LINC00328-2P 2 OTTHUMG00000190820.1 +3361 KI270840.1 ENSEMBL gene 170835 170941 107.0 - 0 ENSG00000278853.1 snRNA RNU6-55P 3 +3362 KI270840.1 HAVANA gene 118368 182333 3621.0 - 0 ENSG00000282715.1 unprocessed_pseudogene ANKRD20A9P 2 OTTHUMG00000190821.1 overlapping_locus +3363 KI270840.1 ENSEMBL gene 187600 187703 104.0 + 0 ENSG00000252379.2 snRNA RF00026 3 +3364 KI270842.1 HAVANA gene 4334 10718 3460.0 + 0 ENSG00000281988.1 protein_coding GRK1 2 OTTHUMG00000190828.1 +3365 KI270842.1 HAVANA gene 22003 24579 2577.0 - 0 ENSG00000282664.1 TEC LINC00552 2 OTTHUMG00000190829.1 +3366 KI270842.1 HAVANA gene 32732 32807 76.0 + 0 ENSG00000282107.1 protein_coding TMEM255B 2 OTTHUMG00000190830.3 overlapping_locus +3367 KI270844.1 HAVANA gene 18546 18639 94.0 + 0 ENSG00000282311.1 unprocessed_pseudogene AL133373.4 2 OTTHUMG00000190841.1 +3368 KI270844.1 HAVANA gene 36580 39407 2828.0 - 0 ENSG00000280633.2 TEC AL133373.3 2 OTTHUMG00000190842.1 +3369 KI270844.1 HAVANA gene 67309 67569 261.0 - 0 ENSG00000281924.1 transcribed_processed_pseudogene POLR3GP1 2 OTTHUMG00000190844.1 overlapping_locus +3370 KI270844.1 HAVANA gene 68538 69455 918.0 - 0 ENSG00000276238.2 transcribed_processed_pseudogene NANOGP7 2 OTTHUMG00000190845.1 overlapping_locus +3371 KI270844.1 HAVANA gene 176906 178412 1185.0 + 0 ENSG00000282153.1 processed_pseudogene AL121839.3 2 OTTHUMG00000190846.1 +3372 KI270844.1 ENSEMBL gene 182710 182925 216.0 - 0 ENSG00000274581.1 snoRNA RF00012 3 +3373 KI270844.1 HAVANA gene 220651 227593 6943.0 - 0 ENSG00000282241.1 sense_intronic AL121839.4 2 OTTHUMG00000190847.1 overlapping_locus +3374 KI270844.1 HAVANA gene 44832 248502 5635.0 - 0 ENSG00000274338.2 protein_coding CATSPERB 2 OTTHUMG00000190843.2 ncRNA_host,overlapping_locus +3375 KI270844.1 HAVANA gene 247546 304321 5521.0 - 0 ENSG00000276776.4 protein_coding TC2N 2 OTTHUMG00000190848.2 overlapping_locus +3376 KI270845.1 HAVANA gene 146844 147670 543.0 - 0 ENSG00000281161.1 antisense BX927359.2 2 OTTHUMG00000190146.1 overlapping_locus +3377 KI270845.1 HAVANA gene 137507 148338 3036.0 + 0 ENSG00000274126.4 protein_coding C14orf180 2 OTTHUMG00000190145.1 +3378 KI270845.1 HAVANA gene 25361 163470 4871.0 - 0 ENSG00000276342.4 protein_coding TMEM179 2 OTTHUMG00000190144.2 overlapping_locus +3379 KI270846.1 HAVANA gene 3859 4237 379.0 - 0 ENSG00000282751.1 processed_pseudogene ATP5MC1P1 2 OTTHUMG00000190871.1 +3380 KI270846.1 HAVANA gene 13608 16692 1224.0 - 0 ENSG00000282219.1 unprocessed_pseudogene ELK2BP 2 OTTHUMG00000190872.1 +3381 KI270846.1 HAVANA gene 55245 56751 1071.0 - 0 ENSG00000276173.2 IG_C_gene IGHA2 2 OTTHUMG00000190873.1 +3382 KI270846.1 HAVANA gene 67715 69502 1412.0 - 0 ENSG00000276192.2 IG_C_gene IGHE 2 OTTHUMG00000190874.1 overlapping_locus +3383 KI270846.1 HAVANA gene 92110 93835 1119.0 - 0 ENSG00000277016.2 IG_C_gene IGHG4 2 OTTHUMG00000190875.1 +3384 KI270846.1 HAVANA gene 110839 112559 1114.0 - 0 ENSG00000274497.2 IG_C_gene IGHG2 2 OTTHUMG00000190876.1 overlapping_locus +3385 KI270846.1 HAVANA gene 115693 116826 548.0 - 0 ENSG00000282430.1 lincRNA AL928742.2 2 OTTHUMG00000190877.1 +3386 KI270846.1 HAVANA gene 132402 137612 1179.0 - 0 ENSG00000282094.1 IG_C_pseudogene IGHGP 2 OTTHUMG00000190878.1 +3387 KI270846.1 HAVANA gene 140077 141083 1007.0 - 0 ENSG00000282360.1 processed_pseudogene ELK2AP 2 OTTHUMG00000190879.1 +3388 KI270846.1 HAVANA gene 171730 172371 362.0 - 0 ENSG00000282474.1 lincRNA AL928768.1 2 OTTHUMG00000190880.1 +3389 KI270846.1 HAVANA gene 174887 176434 1112.0 - 0 ENSG00000282633.1 IG_C_gene IGHA1 2 OTTHUMG00000190881.1 +3390 KI270846.1 HAVANA gene 189563 190296 651.0 - 0 ENSG00000281947.1 IG_C_pseudogene IGHEP1 2 OTTHUMG00000190882.1 +3391 KI270846.1 HAVANA gene 204112 210840 2762.0 - 0 ENSG00000277633.5 IG_C_gene IGHG1 2 OTTHUMG00000190883.1 +3392 KI270846.1 HAVANA gene 236873 239174 1266.0 - 0 ENSG00000282184.2 IG_C_gene IGHG3 2 OTTHUMG00000190884.1 +3393 KI270846.1 HAVANA gene 253274 253600 327.0 - 0 ENSG00000282819.1 processed_pseudogene AL122127.2 2 OTTHUMG00000190885.1 +3394 KI270846.1 HAVANA gene 304534 313446 1678.0 - 0 ENSG00000278801.3 IG_C_gene IGHD 2 OTTHUMG00000190886.1 +3395 KI270846.1 HAVANA gene 321989 323987 1485.0 - 0 ENSG00000282657.3 IG_C_gene IGHM 2 OTTHUMG00000190887.1 +3396 KI270846.1 HAVANA gene 330967 331029 63.0 - 0 ENSG00000282797.1 IG_J_gene IGHJ6 2 OTTHUMG00000190888.4 +3397 KI270846.1 HAVANA gene 331185 331234 50.0 - 0 ENSG00000282541.1 IG_J_pseudogene IGHJ3P 2 OTTHUMG00000190889.1 +3398 KI270846.1 HAVANA gene 331583 331633 51.0 - 0 ENSG00000282615.1 IG_J_gene IGHJ5 2 OTTHUMG00000190890.4 +3399 KI270846.1 HAVANA gene 331984 332031 48.0 - 0 ENSG00000282065.1 IG_J_gene IGHJ4 2 OTTHUMG00000190891.4 +3400 KI270846.1 HAVANA gene 332356 332405 50.0 - 0 ENSG00000282471.1 IG_J_gene IGHJ3 2 OTTHUMG00000190892.4 +3401 KI270846.1 HAVANA gene 332562 332621 60.0 - 0 ENSG00000282778.1 IG_J_pseudogene IGHJ2P 2 OTTHUMG00000190893.1 +3402 KI270846.1 HAVANA gene 332968 333020 53.0 - 0 ENSG00000282342.1 IG_J_gene IGHJ2 2 OTTHUMG00000190894.4 +3403 KI270846.1 HAVANA gene 333176 333227 52.0 - 0 ENSG00000282409.1 IG_J_gene IGHJ1 2 OTTHUMG00000190895.2 +3404 KI270846.1 HAVANA gene 333320 333330 11.0 - 0 ENSG00000282455.1 IG_D_gene IGHD7-27 2 OTTHUMG00000190896.2 +3405 KI270846.1 HAVANA gene 333393 333447 55.0 - 0 ENSG00000282672.1 IG_J_pseudogene IGHJ1P 2 OTTHUMG00000190897.1 +3406 KI270846.1 HAVANA gene 348803 348822 20.0 - 0 ENSG00000282323.1 IG_D_gene IGHD1-26 2 OTTHUMG00000190911.2 +3407 KI270846.1 HAVANA gene 349308 349325 18.0 - 0 ENSG00000282724.1 IG_D_gene IGHD6-25 2 OTTHUMG00000190912.2 +3408 KI270846.1 HAVANA gene 351672 351691 20.0 - 0 ENSG00000282674.1 IG_D_gene IGHD5-24 2 OTTHUMG00000190913.2 +3409 KI270846.1 HAVANA gene 352639 352657 19.0 - 0 ENSG00000282640.1 IG_D_gene IGHD4-23 2 OTTHUMG00000190914.2 +3410 KI270846.1 HAVANA gene 353800 353830 31.0 - 0 ENSG00000282396.1 IG_D_gene IGHD3-22 2 OTTHUMG00000190915.2 +3411 KI270846.1 HAVANA gene 356320 356347 28.0 - 0 ENSG00000281984.1 IG_D_gene IGHD2-21 2 OTTHUMG00000190916.2 +3412 KI270846.1 HAVANA gene 358960 358976 17.0 - 0 ENSG00000282592.1 IG_D_gene IGHD1-20 2 OTTHUMG00000190917.2 +3413 KI270846.1 HAVANA gene 359468 359488 21.0 - 0 ENSG00000282487.1 IG_D_gene IGHD6-19 2 OTTHUMG00000190918.2 +3414 KI270846.1 HAVANA gene 361311 361330 20.0 - 0 ENSG00000282346.1 IG_D_gene IGHD5-18 2 OTTHUMG00000190919.2 +3415 KI270846.1 HAVANA gene 362277 362292 16.0 - 0 ENSG00000282274.1 IG_D_gene IGHD4-17 2 OTTHUMG00000190920.2 +3416 KI270846.1 HAVANA gene 363403 363439 37.0 - 0 ENSG00000282232.1 IG_D_gene IGHD3-16 2 OTTHUMG00000190921.2 +3417 KI270846.1 HAVANA gene 357853 364346 485.0 + 0 ENSG00000282135.1 lincRNA AC246787.4 2 OTTHUMG00000190898.1 +3418 KI270846.1 HAVANA gene 365726 365756 31.0 - 0 ENSG00000282818.1 IG_D_gene IGHD2-15 2 OTTHUMG00000190922.2 +3419 KI270846.1 HAVANA gene 368407 368423 17.0 - 0 ENSG00000282736.1 IG_D_gene IGHD1-14 2 OTTHUMG00000190923.2 +3420 KI270846.1 HAVANA gene 368911 368931 21.0 - 0 ENSG00000282042.1 IG_D_gene IGHD6-13 2 OTTHUMG00000190924.2 +3421 KI270846.1 HAVANA gene 370418 370440 23.0 - 0 ENSG00000282102.1 IG_D_gene IGHD5-12 2 OTTHUMG00000190925.2 +3422 KI270846.1 HAVANA gene 371385 371400 16.0 - 0 ENSG00000281940.1 IG_D_gene IGHD4-11 2 OTTHUMG00000190926.2 +3423 KI270846.1 HAVANA gene 372266 372296 31.0 - 0 ENSG00000282373.1 IG_D_gene IGHD3-10 2 OTTHUMG00000190927.1 +3424 KI270846.1 HAVANA gene 372450 372480 31.0 - 0 ENSG00000281939.1 IG_D_gene IGHD3-9 2 OTTHUMG00000190928.1 +3425 KI270846.1 HAVANA gene 374980 375010 31.0 - 0 ENSG00000282132.1 IG_D_gene IGHD2-8 2 OTTHUMG00000190929.2 +3426 KI270846.1 HAVANA gene 377676 377692 17.0 - 0 ENSG00000282495.1 IG_D_gene IGHD1-7 2 OTTHUMG00000190930.2 +3427 KI270846.1 HAVANA gene 378179 378196 18.0 - 0 ENSG00000282010.1 IG_D_gene IGHD6-6 2 OTTHUMG00000190931.2 +3428 KI270846.1 HAVANA gene 380026 380045 20.0 - 0 ENSG00000282769.1 IG_D_gene IGHD5-5 2 OTTHUMG00000190932.2 +3429 KI270846.1 HAVANA gene 380991 381006 16.0 - 0 ENSG00000282227.1 IG_D_gene IGHD4-4 2 OTTHUMG00000190933.2 +3430 KI270846.1 HAVANA gene 382128 382158 31.0 - 0 ENSG00000282754.1 IG_D_gene IGHD3-3 2 OTTHUMG00000190934.2 +3431 KI270846.1 HAVANA gene 384595 384625 31.0 - 0 ENSG00000282578.1 IG_D_gene IGHD2-2 2 OTTHUMG00000190935.2 +3432 KI270846.1 HAVANA gene 387271 387287 17.0 - 0 ENSG00000282714.1 IG_D_gene IGHD1-1 2 OTTHUMG00000190936.2 +3433 KI270846.1 HAVANA gene 385748 400411 9884.0 + 0 ENSG00000277059.2 lincRNA FAM30A 2 OTTHUMG00000190899.1 +3434 KI270846.1 HAVANA gene 407523 408022 417.0 - 0 ENSG00000282745.1 IG_V_gene IGHV6-1 2 OTTHUMG00000190937.2 +3435 KI270846.1 HAVANA gene 412979 413158 180.0 - 0 ENSG00000282197.1 IG_V_pseudogene IGHVII-1-1 2 OTTHUMG00000190938.1 +3436 KI270846.1 HAVANA gene 437498 440038 2015.0 - 0 ENSG00000282626.1 transcribed_unprocessed_pseudogene ADAM6 2 OTTHUMG00000190939.1 +3437 KI270846.1 HAVANA gene 446289 446915 627.0 - 0 ENSG00000282039.1 processed_pseudogene AC246787.3 2 OTTHUMG00000190940.1 +3438 KI270846.1 HAVANA gene 454351 454852 417.0 - 0 ENSG00000282550.1 IG_V_gene IGHV1-2 2 OTTHUMG00000190941.2 +3439 KI270846.1 HAVANA gene 469303 469593 291.0 - 0 ENSG00000282108.1 IG_V_pseudogene IGHVIII-2-1 2 OTTHUMG00000190942.1 +3440 KI270846.1 HAVANA gene 472864 473343 395.0 - 0 ENSG00000282213.1 IG_V_gene IGHV1-3 2 OTTHUMG00000190943.2 +3441 KI270846.1 HAVANA gene 479691 480189 417.0 - 0 ENSG00000282223.1 IG_V_gene IGHV4-4 2 OTTHUMG00000190944.2 +3442 KI270846.1 HAVANA gene 492914 493399 402.0 - 0 ENSG00000282678.1 IG_V_gene AC244226.1 2 OTTHUMG00000190947.2 +3443 KI270846.1 HAVANA gene 505671 506134 378.0 - 0 ENSG00000277318.2 IG_V_gene IGHV2-5 2 OTTHUMG00000190948.2 +3444 KI270846.1 HAVANA gene 507435 507533 99.0 - 0 ENSG00000282066.1 IG_V_pseudogene IGHVIII-5-1 2 OTTHUMG00000190949.1 +3445 KI270846.1 HAVANA gene 513369 513629 261.0 - 0 ENSG00000282139.1 IG_V_pseudogene IGHVIII-5-2 2 OTTHUMG00000190950.1 +3446 KI270846.1 HAVANA gene 523318 523767 347.0 - 0 ENSG00000281944.1 IG_V_pseudogene IGHV3-6 2 OTTHUMG00000190951.1 +3447 KI270846.1 HAVANA gene 529918 530452 432.0 - 0 ENSG00000282211.1 IG_V_gene IGHV3-7 2 OTTHUMG00000190952.2 +3448 KI270846.1 HAVANA gene 555891 556342 353.0 - 0 ENSG00000282644.1 IG_V_gene AC247036.4 2 OTTHUMG00000190953.2 +3449 KI270846.1 HAVANA gene 575741 576176 353.0 - 0 ENSG00000282401.1 IG_V_gene AC247036.3 2 OTTHUMG00000190954.2 +3450 KI270846.1 HAVANA gene 584404 584973 473.0 - 0 ENSG00000282322.1 IG_V_gene IGHV3-11 2 OTTHUMG00000190955.2 +3451 KI270846.1 HAVANA gene 587976 588242 267.0 - 0 ENSG00000281964.1 IG_V_pseudogene IGHVIII-11-1 2 OTTHUMG00000190956.1 +3452 KI270846.1 HAVANA gene 590189 590478 205.0 - 0 ENSG00000282366.1 IG_V_pseudogene IGHV1-12 2 OTTHUMG00000190957.1 +3453 KI270846.1 HAVANA gene 597309 597841 430.0 - 0 ENSG00000282286.1 IG_V_gene IGHV3-13 2 OTTHUMG00000190958.2 +3454 KI270846.1 HAVANA gene 610056 610346 291.0 - 0 ENSG00000282569.1 IG_V_pseudogene IGHVIII-13-1 2 OTTHUMG00000190959.1 +3455 KI270846.1 HAVANA gene 613660 613900 241.0 - 0 ENSG00000282796.1 IG_V_pseudogene IGHV1-14 2 OTTHUMG00000190960.1 +3456 KI270846.1 HAVANA gene 621391 621932 439.0 - 0 ENSG00000282290.1 IG_V_gene IGHV3-15 2 OTTHUMG00000190961.2 +3457 KI270846.1 HAVANA gene 631352 631571 220.0 - 0 ENSG00000282631.1 IG_V_pseudogene IGHVII-15-1 2 OTTHUMG00000190962.1 +3458 KI270846.1 HAVANA gene 632974 633499 425.0 - 0 ENSG00000282653.1 IG_V_gene IGHV3-16 2 OTTHUMG00000190963.2 +3459 KI270846.1 HAVANA gene 642111 642529 334.0 - 0 ENSG00000282561.1 IG_V_pseudogene IGHV1-17 2 OTTHUMG00000190964.1 +3460 KI270846.1 HAVANA gene 647323 648288 966.0 - 0 ENSG00000282659.1 processed_pseudogene SLC20A1P2 2 OTTHUMG00000190965.1 +3461 KI270846.1 HAVANA gene 652668 653163 412.0 - 0 ENSG00000282716.1 IG_V_gene IGHV1-18 2 OTTHUMG00000190966.2 +3462 KI270846.1 HAVANA gene 664469 664759 291.0 - 0 ENSG00000281996.1 IG_V_pseudogene IGHV3-19 2 OTTHUMG00000190967.1 +3463 KI270846.1 HAVANA gene 674372 676340 389.0 + 0 ENSG00000281928.1 lincRNA AC247036.2 2 OTTHUMG00000190968.1 +3464 KI270846.1 HAVANA gene 678705 679222 415.0 - 0 ENSG00000282476.1 IG_V_gene IGHV3-20 2 OTTHUMG00000190969.2 +3465 KI270846.1 HAVANA gene 702831 703363 432.0 - 0 ENSG00000282281.1 IG_V_gene IGHV3-21 2 OTTHUMG00000190970.2 +3466 KI270846.1 HAVANA gene 725531 725992 359.0 - 0 ENSG00000282609.1 IG_V_pseudogene IGHV3-22 2 OTTHUMG00000190971.1 +3467 KI270846.1 HAVANA gene 731131 731395 265.0 - 0 ENSG00000282127.1 IG_V_pseudogene IGHVII-22-1 2 OTTHUMG00000190972.1 +3468 KI270846.1 HAVANA gene 732457 732484 28.0 - 0 ENSG00000282687.1 IG_V_pseudogene IGHVIII-22-2 2 OTTHUMG00000190973.1 +3469 KI270846.1 HAVANA gene 736375 736909 432.0 - 0 ENSG00000281962.1 IG_V_gene IGHV3-23 2 OTTHUMG00000190974.2 +3470 KI270846.1 HAVANA gene 744315 744812 413.0 - 0 ENSG00000282284.1 IG_V_gene IGHV1-24 2 OTTHUMG00000190975.2 +3471 KI270846.1 HAVANA gene 754580 755426 847.0 - 0 ENSG00000282601.1 processed_pseudogene HOMER2P2 2 OTTHUMG00000190976.1 +3472 KI270846.1 HAVANA gene 756798 757248 351.0 - 0 ENSG00000282710.1 IG_V_pseudogene IGHV3-25 2 OTTHUMG00000190977.1 +3473 KI270846.1 HAVANA gene 761337 761577 241.0 - 0 ENSG00000281926.1 IG_V_pseudogene IGHVIII-25-1 2 OTTHUMG00000190978.1 +3474 KI270846.1 HAVANA gene 769164 769631 382.0 - 0 ENSG00000282344.1 IG_V_gene IGHV2-26 2 OTTHUMG00000190979.2 +3475 KI270846.1 HAVANA gene 777186 777435 250.0 - 0 ENSG00000282239.1 IG_V_pseudogene IGHVIII-26-1 2 OTTHUMG00000190980.1 +3476 KI270846.1 HAVANA gene 782420 782744 325.0 - 0 ENSG00000282452.1 IG_V_pseudogene IGHVII-26-2 2 OTTHUMG00000190981.1 +3477 KI270846.1 HAVANA gene 785592 786005 330.0 - 0 ENSG00000282267.1 IG_V_pseudogene IGHV7-27 2 OTTHUMG00000190982.1 +3478 KI270846.1 HAVANA gene 792023 792529 425.0 - 0 ENSG00000282726.1 IG_V_gene IGHV4-28 2 OTTHUMG00000190983.2 +3479 KI270846.1 HAVANA gene 798885 799321 334.0 - 0 ENSG00000282702.1 IG_V_pseudogene AC245166.1 2 OTTHUMG00000190984.1 +3480 KI270846.1 HAVANA gene 802851 803382 431.0 - 0 ENSG00000282777.1 IG_V_gene IGHV3-30 2 OTTHUMG00000190985.2 +3481 KI270846.1 HAVANA gene 810493 810724 232.0 - 0 ENSG00000282136.1 IG_V_pseudogene IGHVII-30-1 2 OTTHUMG00000190986.1 +3482 KI270846.1 HAVANA gene 812164 812602 345.0 - 0 ENSG00000282356.1 IG_V_pseudogene IGHV3-30-2 2 OTTHUMG00000190987.1 +3483 KI270846.1 HAVANA gene 817052 817524 391.0 - 0 ENSG00000282404.1 IG_V_gene AC234301.4 2 OTTHUMG00000190988.2 +3484 KI270846.1 HAVANA gene 822441 822477 37.0 - 0 ENSG00000282761.1 IG_V_pseudogene AC234301.6 2 OTTHUMG00000190989.1 +3485 KI270846.1 HAVANA gene 823980 824407 325.0 - 0 ENSG00000281983.1 IG_V_pseudogene IGHV3-29 2 OTTHUMG00000190990.1 +3486 KI270846.1 HAVANA gene 826782 827302 420.0 - 0 ENSG00000282642.1 IG_V_gene IGHV3-33 2 OTTHUMG00000190991.2 +3487 KI270846.1 HAVANA gene 836089 836526 344.0 - 0 ENSG00000281959.1 IG_V_pseudogene AC234301.2 2 OTTHUMG00000191132.1 +3488 KI270846.1 HAVANA gene 840988 841418 349.0 - 0 ENSG00000278082.3 IG_V_gene AC234301.1 2 OTTHUMG00000191133.2 +3489 KI270846.1 HAVANA gene 847819 848285 364.0 - 0 ENSG00000282595.1 IG_V_pseudogene AC234301.5 2 OTTHUMG00000191134.1 +3490 KI270846.1 HAVANA gene 851470 851923 353.0 - 0 ENSG00000282150.1 IG_V_gene AC234301.3 2 OTTHUMG00000191135.2 +3491 KI270846.1 HAVANA gene 859064 859343 280.0 - 0 ENSG00000282552.1 IG_V_pseudogene IGHVII-33-1 2 OTTHUMG00000190993.1 +3492 KI270846.1 HAVANA gene 860786 861225 346.0 - 0 ENSG00000282526.1 IG_V_pseudogene IGHV3-33-2 2 OTTHUMG00000190994.1 +3493 KI270846.1 HAVANA gene 865340 865824 402.0 - 0 ENSG00000276491.2 IG_V_gene IGHV4-34 2 OTTHUMG00000190995.2 +3494 KI270846.1 HAVANA gene 868979 869412 350.0 - 0 ENSG00000282123.1 IG_V_pseudogene IGHV7-34-1 2 OTTHUMG00000190996.1 +3495 KI270846.1 HAVANA gene 881069 881537 368.0 - 0 ENSG00000282104.1 IG_V_gene IGHV3-35 2 OTTHUMG00000190997.3 +3496 KI270846.1 HAVANA gene 884453 884910 401.0 - 0 ENSG00000281986.1 IG_V_pseudogene IGHV3-36 2 OTTHUMG00000190998.1 +3497 KI270846.1 HAVANA gene 888355 888793 340.0 - 0 ENSG00000281973.1 IG_V_pseudogene IGHV3-37 2 OTTHUMG00000190999.1 +3498 KI270846.1 HAVANA gene 902171 902700 427.0 - 0 ENSG00000282425.1 IG_V_gene IGHV3-38 2 OTTHUMG00000191000.3 +3499 KI270846.1 HAVANA gene 909704 909757 54.0 - 0 ENSG00000282576.1 IG_V_pseudogene IGHVIII-38-1 2 OTTHUMG00000191001.1 +3500 KI270846.1 HAVANA gene 913388 913897 427.0 - 0 ENSG00000282579.1 IG_V_gene IGHV4-39 2 OTTHUMG00000191002.2 +3501 KI270846.1 HAVANA gene 917044 917242 199.0 - 0 ENSG00000282194.1 IG_V_pseudogene IGHV7-40 2 OTTHUMG00000191003.1 +3502 KI270846.1 HAVANA gene 928094 928234 141.0 - 0 ENSG00000282533.1 unprocessed_pseudogene AC244452.2 2 OTTHUMG00000191004.1 +3503 KI270846.1 HAVANA gene 932629 932686 58.0 - 0 ENSG00000282292.1 IG_V_pseudogene IGHVII-40-1 2 OTTHUMG00000191005.1 +3504 KI270846.1 HAVANA gene 934812 935263 349.0 - 0 ENSG00000282783.1 IG_V_pseudogene IGHV3-41 2 OTTHUMG00000191006.1 +3505 KI270846.1 HAVANA gene 951771 952734 964.0 - 0 ENSG00000281971.1 processed_pseudogene HOMER2P1 2 OTTHUMG00000191007.1 +3506 KI270846.1 HAVANA gene 954937 955237 301.0 - 0 ENSG00000282180.1 IG_V_pseudogene IGHV3-42 2 OTTHUMG00000191008.1 +3507 KI270846.1 HAVANA gene 961942 962479 435.0 - 0 ENSG00000282151.1 IG_V_gene IGHV3-43 2 OTTHUMG00000191009.2 +3508 KI270846.1 HAVANA gene 969899 970072 93.0 - 0 ENSG00000282802.1 IG_V_pseudogene IGHVIII-44 2 OTTHUMG00000191010.1 +3509 KI270846.1 HAVANA gene 981024 981435 338.0 - 0 ENSG00000282553.1 IG_V_pseudogene IGHVIV-44-1 2 OTTHUMG00000191011.1 +3510 KI270846.1 HAVANA gene 985813 986062 250.0 - 0 ENSG00000281956.1 IG_V_pseudogene IGHVII-44-2 2 OTTHUMG00000191012.1 +3511 KI270846.1 HAVANA gene 998675 999170 411.0 - 0 ENSG00000282776.1 IG_V_gene IGHV1-45 2 OTTHUMG00000191013.2 +3512 KI270846.1 HAVANA gene 1002794 1003535 657.0 - 0 ENSG00000282131.1 IG_V_gene IGHV1-46 2 OTTHUMG00000191014.2 +3513 KI270846.1 HAVANA gene 1007497 1007533 37.0 - 0 ENSG00000282196.1 IG_V_pseudogene IGHVII-46-1 2 OTTHUMG00000191015.1 +3514 KI270846.1 HAVANA gene 1010261 1010706 335.0 - 0 ENSG00000282398.1 IG_V_pseudogene IGHV3-47 2 OTTHUMG00000191016.1 +3515 KI270846.1 HAVANA gene 1022820 1023150 331.0 - 0 ENSG00000282708.1 IG_V_pseudogene IGHVIII-47-1 2 OTTHUMG00000191017.1 +3516 KI270846.1 HAVANA gene 1029489 1030023 432.0 - 0 ENSG00000282627.1 IG_V_gene IGHV3-48 2 OTTHUMG00000191018.2 +3517 KI270846.1 HAVANA gene 1048615 1049156 439.0 - 0 ENSG00000275316.3 IG_V_gene IGHV3-49 2 OTTHUMG00000191019.2 +3518 KI270846.1 HAVANA gene 1056054 1056277 224.0 - 0 ENSG00000282465.1 IG_V_pseudogene IGHVII-49-1 2 OTTHUMG00000191020.1 +3519 KI270846.1 HAVANA gene 1057796 1058234 317.0 - 0 ENSG00000282138.1 IG_V_pseudogene IGHV3-50 2 OTTHUMG00000191021.1 +3520 KI270846.1 HAVANA gene 1070421 1070915 412.0 - 0 ENSG00000277574.2 IG_V_gene IGHV5-51 2 OTTHUMG00000191022.2 +3521 KI270846.1 HAVANA gene 1075185 1075486 302.0 - 0 ENSG00000282294.1 IG_V_pseudogene IGHVIII-51-1 2 OTTHUMG00000191023.1 +3522 KI270846.1 HAVANA gene 1076397 1076655 259.0 - 0 ENSG00000282312.1 IG_V_pseudogene IGHVII-51-2 2 OTTHUMG00000191024.1 +3523 KI270846.1 HAVANA gene 1078055 1078505 353.0 - 0 ENSG00000282188.1 IG_V_pseudogene IGHV3-52 2 OTTHUMG00000191025.1 +3524 KI270846.1 HAVANA gene 1084355 1085026 571.0 - 0 ENSG00000282593.1 IG_V_gene IGHV3-53 2 OTTHUMG00000191026.2 +3525 KI270846.1 HAVANA gene 1091349 1091603 255.0 - 0 ENSG00000281923.1 IG_V_pseudogene IGHVII-53-1 2 OTTHUMG00000191027.1 +3526 KI270846.1 HAVANA gene 1093025 1093471 353.0 - 0 ENSG00000282383.1 IG_V_pseudogene IGHV3-54 2 OTTHUMG00000191028.1 +3527 KI270846.1 HAVANA gene 1097780 1098230 368.0 - 0 ENSG00000282616.1 IG_V_pseudogene IGHV4-55 2 OTTHUMG00000191029.1 +3528 KI270846.1 HAVANA gene 1101441 1101875 351.0 - 0 ENSG00000282504.1 IG_V_pseudogene IGHV7-56 2 OTTHUMG00000191030.1 +3529 KI270846.1 HAVANA gene 1110573 1110852 280.0 - 0 ENSG00000282794.1 IG_V_pseudogene IGHV3-57 2 OTTHUMG00000191031.1 +3530 KI270846.1 HAVANA gene 1114036 1114534 414.0 - 0 ENSG00000282337.1 IG_V_gene IGHV1-58 2 OTTHUMG00000191032.2 +3531 KI270846.1 HAVANA gene 1118928 1119504 495.0 - 0 ENSG00000282691.1 IG_V_gene IGHV4-59 2 OTTHUMG00000191033.2 +3532 KI270846.1 HAVANA gene 1122876 1123332 354.0 - 0 ENSG00000282586.1 IG_V_pseudogene IGHV3-60 2 OTTHUMG00000191034.1 +3533 KI270846.1 ENSEMBL gene 1128351 1128465 115.0 + 0 ENSG00000273928.1 rRNA RF00001 3 +3534 KI270846.1 HAVANA gene 1129397 1129652 256.0 - 0 ENSG00000282082.1 IG_V_pseudogene IGHVII-60-1 2 OTTHUMG00000191038.1 +3535 KI270846.1 HAVANA gene 1130798 1131336 457.0 - 0 ENSG00000282451.1 IG_V_gene IGHV4-61 2 OTTHUMG00000191039.2 +3536 KI270846.1 HAVANA gene 1134821 1135264 340.0 - 0 ENSG00000282414.1 IG_V_pseudogene IGHV3-62 2 OTTHUMG00000191040.1 +3537 KI270846.1 HAVANA gene 1142230 1142464 235.0 - 0 ENSG00000282099.1 IG_V_pseudogene IGHVII-62-1 2 OTTHUMG00000191041.1 +3538 KI270846.1 HAVANA gene 1143916 1144360 341.0 - 0 ENSG00000282560.1 IG_V_pseudogene IGHV3-63 2 OTTHUMG00000191042.1 +3539 KI270846.1 HAVANA gene 1149402 1149937 433.0 - 0 ENSG00000274236.3 IG_V_gene IGHV3-64 2 OTTHUMG00000191043.2 +3540 KI270846.1 HAVANA gene 1157771 1158211 341.0 - 0 ENSG00000282821.1 IG_V_pseudogene IGHV3-65 2 OTTHUMG00000191044.1 +3541 KI270846.1 HAVANA gene 1163476 1163723 248.0 - 0 ENSG00000282018.1 IG_V_pseudogene IGHVII-65-1 2 OTTHUMG00000191045.1 +3542 KI270846.1 HAVANA gene 1166694 1167223 429.0 - 0 ENSG00000282045.1 IG_V_gene IGHV3-66 2 OTTHUMG00000191046.2 +3543 KI270846.1 HAVANA gene 1172282 1172721 357.0 - 0 ENSG00000282439.1 IG_V_pseudogene IGHV1-67 2 OTTHUMG00000191047.1 +3544 KI270846.1 HAVANA gene 1175074 1176029 956.0 - 0 ENSG00000282117.1 processed_pseudogene SLC20A1P1 2 OTTHUMG00000191048.1 +3545 KI270846.1 HAVANA gene 1178196 1178241 46.0 - 0 ENSG00000282652.1 IG_V_pseudogene IGHVII-67-1 2 OTTHUMG00000191049.1 +3546 KI270846.1 HAVANA gene 1178792 1178879 88.0 - 0 ENSG00000282016.1 IG_V_pseudogene IGHVIII-67-2 2 OTTHUMG00000191050.1 +3547 KI270846.1 HAVANA gene 1184336 1184567 232.0 - 0 ENSG00000282161.1 IG_V_pseudogene IGHVIII-67-3 2 OTTHUMG00000191051.1 +3548 KI270846.1 HAVANA gene 1186781 1187076 296.0 - 0 ENSG00000282808.1 IG_V_pseudogene IGHVIII-67-4 2 OTTHUMG00000191052.1 +3549 KI270846.1 HAVANA gene 1195531 1195825 295.0 - 0 ENSG00000282055.1 IG_V_pseudogene IGHV1-68 2 OTTHUMG00000191053.1 +3550 KI270846.1 HAVANA gene 1206361 1206860 414.0 - 0 ENSG00000282350.1 IG_V_gene IGHV1-69 2 OTTHUMG00000191054.2 +3551 KI270846.1 HAVANA gene 1215253 1215772 434.0 - 0 ENSG00000282482.1 IG_V_gene IGHV2-70D 2 OTTHUMG00000191055.2 +3552 KI270846.1 HAVANA gene 1219842 1220286 342.0 - 0 ENSG00000282421.1 IG_V_pseudogene IGHV3-69-1 2 OTTHUMG00000191136.1 +3553 KI270846.1 HAVANA gene 1228789 1229226 353.0 - 0 ENSG00000275148.2 IG_V_gene IGHV1-69-2 2 OTTHUMG00000191057.2 +3554 KI270846.1 HAVANA gene 1241971 1242424 356.0 - 0 ENSG00000282822.1 IG_V_gene AC242528.1 2 OTTHUMG00000191138.2 +3555 KI270846.1 HAVANA gene 1253361 1253857 411.0 - 0 ENSG00000282399.1 IG_V_gene IGHV1-69D 2 OTTHUMG00000191979.1 +3556 KI270846.1 HAVANA gene 1261745 1262264 434.0 - 0 ENSG00000282453.1 IG_V_gene IGHV2-70 2 OTTHUMG00000191978.1 +3557 KI270846.1 HAVANA gene 1266334 1266792 356.0 - 0 ENSG00000282679.1 IG_V_pseudogene IGHV3-71 2 OTTHUMG00000191059.1 +3558 KI270846.1 HAVANA gene 1281865 1282407 440.0 - 0 ENSG00000278042.2 IG_V_gene IGHV3-72 2 OTTHUMG00000191060.2 +3559 KI270846.1 HAVANA gene 1293866 1294407 439.0 - 0 ENSG00000273539.3 IG_V_gene IGHV3-73 2 OTTHUMG00000191061.2 +3560 KI270846.1 HAVANA gene 1301614 1302305 589.0 - 0 ENSG00000282305.1 IG_V_gene IGHV3-74 2 OTTHUMG00000191062.2 +3561 KI270846.1 HAVANA gene 1312348 1312588 241.0 - 0 ENSG00000282186.1 IG_V_pseudogene IGHVII-74-1 2 OTTHUMG00000191063.1 +3562 KI270846.1 HAVANA gene 1314861 1315321 358.0 - 0 ENSG00000276060.2 IG_V_pseudogene IGHV3-75 2 OTTHUMG00000191064.1 +3563 KI270846.1 HAVANA gene 1319043 1319337 295.0 - 0 ENSG00000281966.1 IG_V_pseudogene IGHV3-76 2 OTTHUMG00000191065.1 +3564 KI270846.1 HAVANA gene 1322941 1323226 286.0 - 0 ENSG00000282473.1 IG_V_pseudogene IGHVIII-76-1 2 OTTHUMG00000191066.1 +3565 KI270846.1 HAVANA gene 1342297 1342591 295.0 - 0 ENSG00000276708.2 IG_V_pseudogene IGHV5-78 2 OTTHUMG00000191067.1 +3566 KI270847.1 HAVANA gene 914 8068 2072.0 + 0 ENSG00000280805.2 lincRNA AL117192.2 2 OTTHUMG00000190201.1 +3567 KI270847.1 HAVANA gene 20259 22044 1384.0 - 0 ENSG00000281811.1 lincRNA LINC02287 2 OTTHUMG00000190202.1 +3568 KI270847.1 HAVANA gene 37642 49855 3102.0 + 0 ENSG00000276781.3 protein_coding CHGA 2 OTTHUMG00000190203.1 +3569 KI270847.1 HAVANA gene 182014 186714 4701.0 + 0 ENSG00000280802.1 antisense ITPK1-AS1 2 OTTHUMG00000190205.1 +3570 KI270847.1 HAVANA gene 51476 230882 6783.0 - 0 ENSG00000274958.4 protein_coding ITPK1 2 OTTHUMG00000190204.2 +3571 KI270847.1 HAVANA gene 252628 253027 400.0 + 0 ENSG00000281141.1 processed_pseudogene AL110118.3 2 OTTHUMG00000190206.1 +3572 KI270847.1 HAVANA gene 296758 299490 2537.0 - 0 ENSG00000278268.2 protein_coding MOAP1 2 OTTHUMG00000190207.1 +3573 KI270847.1 HAVANA gene 299513 301651 1365.0 + 0 ENSG00000275947.2 protein_coding TMEM251 2 OTTHUMG00000190208.1 overlapping_locus +3574 KI270847.1 HAVANA gene 317456 321656 1154.0 - 0 ENSG00000275619.2 protein_coding GON7 2 OTTHUMG00000190210.1 +3575 KI270847.1 HAVANA gene 299535 333148 920.0 + 0 ENSG00000281847.2 protein_coding AL110118.4 2 OTTHUMG00000190209.2 overlapping_locus +3576 KI270847.1 HAVANA gene 338160 338701 542.0 - 0 ENSG00000280562.1 processed_pseudogene AL132838.3 2 OTTHUMG00000190212.1 +3577 KI270847.1 HAVANA gene 321618 343777 3694.0 + 0 ENSG00000278787.4 protein_coding UBR7 2 OTTHUMG00000190211.2 overlapping_locus +3578 KI270847.1 HAVANA gene 358572 358885 314.0 + 0 ENSG00000281292.1 processed_pseudogene AL132838.4 2 OTTHUMG00000190214.1 +3579 KI270847.1 HAVANA gene 352112 447654 11333.0 - 0 ENSG00000277222.4 protein_coding BTBD7 2 OTTHUMG00000190213.2 +3580 KI270847.1 HAVANA gene 449090 449619 530.0 + 0 ENSG00000281396.1 sense_intronic AL122023.2 2 OTTHUMG00000190216.1 overlapping_locus +3581 KI270847.1 HAVANA gene 461753 462918 533.0 + 0 ENSG00000277018.2 protein_coding COX8C 2 OTTHUMG00000190217.1 overlapping_locus +3582 KI270847.1 ENSEMBL gene 511701 511796 96.0 - 0 ENSG00000277032.1 misc_RNA RF00019 3 +3583 KI270847.1 ENSEMBL gene 551962 552072 111.0 - 0 ENSG00000276881.1 snRNA RNU6-1258P 3 +3584 KI270847.1 ENSEMBL gene 751741 751900 160.0 + 0 ENSG00000274710.1 misc_RNA RF02271 3 +3585 KI270847.1 HAVANA gene 447781 822438 12513.0 + 0 ENSG00000276416.3 protein_coding UNC79 2 OTTHUMG00000190215.2 ncRNA_host,overlapping_locus +3586 KI270847.1 HAVANA gene 832860 903043 3892.0 - 0 ENSG00000274089.4 protein_coding PRIMA1 2 OTTHUMG00000190218.1 +3587 KI270847.1 HAVANA gene 1010324 1012321 1998.0 + 0 ENSG00000281432.1 TEC AL132642.3 2 OTTHUMG00000190219.1 +3588 KI270847.1 HAVANA gene 1019292 1041628 2781.0 - 0 ENSG00000281032.1 antisense FAM181A-AS1 2 OTTHUMG00000190220.1 +3589 KI270847.1 HAVANA gene 1033456 1044170 2202.0 + 0 ENSG00000273533.3 protein_coding FAM181A 2 OTTHUMG00000190221.3 +3590 KI270847.1 HAVANA gene 1054117 1058691 553.0 + 0 ENSG00000281498.1 antisense AL132642.4 2 OTTHUMG00000190223.1 +3591 KI270847.1 HAVANA gene 1048715 1091353 5040.0 - 0 ENSG00000278693.3 protein_coding ASB2 2 OTTHUMG00000190222.2 +3592 KI270847.1 HAVANA gene 1111832 1123425 2468.0 + 0 ENSG00000280668.2 lincRNA AL079302.1 2 OTTHUMG00000190224.1 +3593 KI270847.1 HAVANA gene 1140891 1164186 4946.0 + 0 ENSG00000277276.3 protein_coding OTUB2 2 OTTHUMG00000190225.1 +3594 KI270847.1 HAVANA gene 1165482 1195807 6007.0 - 0 ENSG00000273761.5 protein_coding DDX24 2 OTTHUMG00000190226.1 +3595 KI270847.1 HAVANA gene 1195844 1218408 2380.0 + 0 ENSG00000276880.3 protein_coding IFI27L1 2 OTTHUMG00000190227.2 +3596 KI270847.1 HAVANA gene 1219398 1231260 4147.0 + 0 ENSG00000275214.4 protein_coding IFI27 2 OTTHUMG00000190228.2 +3597 KI270847.1 HAVANA gene 1242341 1244815 1662.0 - 0 ENSG00000276879.2 protein_coding IFI27L2 2 OTTHUMG00000190229.1 +3598 KI270847.1 HAVANA gene 1260690 1394297 4974.0 + 0 ENSG00000278326.4 protein_coding PPP4R4 2 OTTHUMG00000190240.2 +3599 KI270847.1 HAVANA gene 1395022 1407833 5462.0 - 0 ENSG00000278767.4 protein_coding SERPINA10 2 OTTHUMG00000190241.1 +3600 KI270847.1 HAVANA gene 1418810 1437956 1852.0 - 0 ENSG00000277405.2 protein_coding SERPINA6 2 OTTHUMG00000190242.2 +3601 KI270847.1 HAVANA gene 1478202 1488979 1485.0 - 0 ENSG00000274821.4 protein_coding SERPINA2 2 OTTHUMG00000190243.1 +3602 KI270847.1 HAVANA gene 1493319 1507265 4177.0 - 0 ENSG00000277377.4 protein_coding SERPINA1 2 OTTHUMG00000190244.2 +3603 KI270848.1 HAVANA gene 746 78058 5884.0 - 0 ENSG00000280618.2 protein_coding CYFIP1 2 OTTHUMG00000189940.2 +3604 KI270848.1 HAVANA gene 80186 136694 7186.0 - 0 ENSG00000276856.3 protein_coding TUBGCP5 2 OTTHUMG00000189941.4 +3605 KI270848.1 HAVANA gene 183255 221840 1010.0 + 0 ENSG00000280500.1 transcribed_unprocessed_pseudogene ELMO2P1 2 OTTHUMG00000190047.1 +3606 KI270848.1 HAVANA gene 228776 237330 2620.0 - 0 ENSG00000275009.2 protein_coding GOLGA6L1 2 OTTHUMG00000190055.1 +3607 KI270848.1 HAVANA gene 241071 244930 668.0 - 0 ENSG00000280476.1 unprocessed_pseudogene AC116165.4 2 OTTHUMG00000190056.1 +3608 KI270848.1 ENSEMBL gene 266405 266694 290.0 + 0 ENSG00000274040.1 misc_RNA RF00017 3 +3609 KI270848.1 HAVANA gene 257936 268257 1959.0 + 0 ENSG00000278070.2 unprocessed_pseudogene GOLGA8EP 2 OTTHUMG00000190048.1 +3610 KI270848.1 HAVANA gene 280377 282557 2181.0 + 0 ENSG00000280461.1 processed_pseudogene ABCB10P1 2 OTTHUMG00000190057.1 +3611 KI270848.1 HAVANA gene 293999 294204 206.0 + 0 ENSG00000281012.1 processed_pseudogene AC116165.7 2 OTTHUMG00000190058.1 +3612 KI270848.1 HAVANA gene 326384 326899 400.0 - 0 ENSG00000280679.1 unprocessed_pseudogene AC116165.6 2 OTTHUMG00000190059.1 +3613 KI270849.1 HAVANA gene 3083 7492 4410.0 - 0 ENSG00000282700.1 TEC AC018901.1 2 OTTHUMG00000191130.1 +3614 KI270849.1 ENSEMBL gene 20670 20767 98.0 - 0 ENSG00000207390.2 misc_RNA RF00019 3 +3615 KI270849.1 HAVANA gene 34369 34665 297.0 + 0 ENSG00000282077.1 processed_transcript PATL2 2 OTTHUMG00000191131.1 +3616 KI270849.1 HAVANA gene 34826 42225 6088.0 + 0 ENSG00000273686.4 protein_coding B2M 2 OTTHUMG00000191037.1 +3617 KI270849.1 HAVANA gene 52357 91200 8113.0 + 0 ENSG00000278211.4 protein_coding TRIM69 2 OTTHUMG00000190946.3 +3618 KI270849.1 ENSEMBL gene 167937 168049 113.0 + 0 ENSG00000273845.1 misc_RNA RF00019 3 +3619 KI270849.1 HAVANA gene 150689 216558 3029.0 - 0 ENSG00000282195.1 transcribed_unprocessed_pseudogene SORD2P 2 OTTHUMG00000190945.1 +3620 KI270849.1 ENSEMBL gene 216480 216644 165.0 + 0 ENSG00000273636.1 snRNA RF00003 3 +3621 KI270850.1 HAVANA gene 8576 44645 4875.0 + 0 ENSG00000281976.1 transcribed_unprocessed_pseudogene ADAMTS7P1 2 OTTHUMG00000191281.1 +3622 KI270850.1 HAVANA gene 52800 59514 1682.0 - 0 ENSG00000274042.2 protein_coding GOLGA6L10 2 OTTHUMG00000191282.1 +3623 KI270850.1 HAVANA gene 90834 105740 6013.0 - 0 ENSG00000282377.1 transcribed_unprocessed_pseudogene AC011295.2 2 OTTHUMG00000191249.1 +3624 KI270850.1 ENSEMBL gene 113267 122964 498.0 - 0 ENSG00000275049.1 protein_coding AC011295.1 3 +3625 KI270850.1 HAVANA gene 128991 138515 4762.0 - 0 ENSG00000274166.2 protein_coding GOLGA6L10 2 OTTHUMG00000191250.1 +3626 KI270850.1 HAVANA gene 161299 162009 711.0 - 0 ENSG00000273673.2 transcribed_processed_pseudogene RPL9P9 2 OTTHUMG00000191251.1 +3627 KI270850.1 HAVANA gene 144196 209160 2584.0 + 0 ENSG00000282084.1 transcribed_unprocessed_pseudogene UBE2Q2P2 2 OTTHUMG00000191179.1 overlapping_locus +3628 KI270850.1 HAVANA gene 207736 223315 785.0 + 0 ENSG00000282814.1 processed_transcript AC010724.3 2 OTTHUMG00000191180.1 overlapping_locus +3629 KI270850.1 HAVANA gene 219103 228233 6572.0 + 0 ENSG00000274320.2 protein_coding GOLGA6L9 2 OTTHUMG00000191176.1 overlapping_locus +3630 KI270850.1 HAVANA gene 234751 243765 153.0 + 0 ENSG00000276228.2 unprocessed_pseudogene UBE2Q2P6 2 OTTHUMG00000191175.2 +3631 KI270850.1 HAVANA gene 261280 262027 446.0 + 0 ENSG00000282514.1 unprocessed_pseudogene AC010724.1 2 OTTHUMG00000191178.1 +3632 KI270850.1 HAVANA gene 248555 266338 7170.0 + 0 ENSG00000282457.1 transcribed_unprocessed_pseudogene CSPG4P10 2 OTTHUMG00000191177.1 +3633 KI270850.1 HAVANA gene 262073 303283 1857.0 - 0 ENSG00000282183.1 transcribed_unprocessed_pseudogene GOLGA2P10 2 OTTHUMG00000191169.1 +3634 KI270850.1 HAVANA gene 308934 315555 1254.0 + 0 ENSG00000282209.1 transcribed_unprocessed_pseudogene GOLGA6L17P 2 OTTHUMG00000191170.1 +3635 KI270850.1 HAVANA gene 320759 323245 433.0 - 0 ENSG00000282596.1 unprocessed_pseudogene DNM1P38 2 OTTHUMG00000191171.1 +3636 KI270850.1 HAVANA gene 325859 329670 3812.0 - 0 ENSG00000278229.2 protein_coding RPS17 2 OTTHUMG00000191172.1 overlapping_locus +3637 KI270850.1 HAVANA gene 329138 345037 880.0 - 0 ENSG00000282755.1 protein_coding AC010724.2 2 OTTHUMG00000191173.2 overlapping_locus +3638 KI270850.1 HAVANA gene 332306 430788 6940.0 - 0 ENSG00000277445.4 protein_coding CPEB1 2 OTTHUMG00000191140.4 overlapping_locus +3639 KI270851.1 HAVANA gene 5129 5408 280.0 + 0 ENSG00000281422.1 unprocessed_pseudogene AC136687.2 2 OTTHUMG00000190235.1 +3640 KI270851.1 HAVANA gene 16227 18061 1835.0 + 0 ENSG00000281537.1 processed_pseudogene AC136687.3 2 OTTHUMG00000190236.1 +3641 KI270851.1 HAVANA gene 45677 51413 4217.0 + 0 ENSG00000281846.1 unprocessed_pseudogene SPATA31E3P 2 OTTHUMG00000190237.1 +3642 KI270851.1 ENSEMBL gene 73675 73964 290.0 - 0 ENSG00000276377.1 misc_RNA RF00017 3 +3643 KI270851.1 HAVANA gene 71514 82378 2837.0 - 0 ENSG00000278429.3 transcribed_unprocessed_pseudogene GOLGA8DP 2 OTTHUMG00000190232.1 +3644 KI270851.1 HAVANA gene 95362 99307 1406.0 + 0 ENSG00000280700.1 unprocessed_pseudogene AC136687.1 2 OTTHUMG00000190233.1 +3645 KI270851.1 HAVANA gene 103148 112824 3700.0 + 0 ENSG00000274404.3 protein_coding GOLGA6L22 2 OTTHUMG00000190234.1 +3646 KI270851.1 HAVANA gene 124076 128477 759.0 - 0 ENSG00000281828.1 unprocessed_pseudogene HERC2P7 2 OTTHUMG00000190238.1 +3647 KI270851.1 HAVANA gene 139181 235188 6334.0 + 0 ENSG00000280787.2 transcribed_unprocessed_pseudogene HERC2P2 2 OTTHUMG00000190230.1 +3648 KI270851.1 ENSEMBL gene 253477 253713 237.0 - 0 ENSG00000276062.1 misc_RNA RF00017 3 +3649 KI270851.1 HAVANA gene 251876 262186 2506.0 - 0 ENSG00000281356.2 transcribed_unprocessed_pseudogene GOLGA8IP 2 OTTHUMG00000190231.1 +3650 KI270852.1 HAVANA gene 8090 18057 382.0 - 0 ENSG00000281804.1 unprocessed_pseudogene AC068446.4 2 OTTHUMG00000190128.1 +3651 KI270852.1 HAVANA gene 51545 53093 1549.0 - 0 ENSG00000274240.2 processed_pseudogene AC136352.1 2 OTTHUMG00000190129.1 +3652 KI270852.1 ENSEMBL gene 65641 65747 107.0 + 0 ENSG00000275809.1 snRNA RF00026 3 +3653 KI270852.1 HAVANA gene 56126 83263 2165.0 - 0 ENSG00000281836.1 lincRNA AC136352.10 2 OTTHUMG00000190130.1 +3654 KI270852.1 HAVANA gene 86402 101847 752.0 - 0 ENSG00000281507.1 lincRNA AC136352.8 2 OTTHUMG00000190131.1 +3655 KI270852.1 HAVANA gene 100137 101924 1074.0 + 0 ENSG00000281263.1 lincRNA AC136352.7 2 OTTHUMG00000190132.1 +3656 KI270852.1 HAVANA gene 102515 103052 538.0 - 0 ENSG00000281208.1 processed_pseudogene AC136352.6 2 OTTHUMG00000190133.1 +3657 KI270852.1 HAVANA gene 126428 128627 2200.0 + 0 ENSG00000281803.1 lincRNA AC136352.9 2 OTTHUMG00000190134.1 +3658 KI270852.1 HAVANA gene 140377 140836 460.0 + 0 ENSG00000281153.1 processed_pseudogene AC136352.5 2 OTTHUMG00000190136.1 +3659 KI270852.1 HAVANA gene 141815 142058 244.0 + 0 ENSG00000281718.1 processed_pseudogene GRAMD4P6 2 OTTHUMG00000190137.1 +3660 KI270852.1 HAVANA gene 130592 145190 1494.0 - 0 ENSG00000274439.2 transcribed_processed_pseudogene CXADRP2 2 OTTHUMG00000190135.1 +3661 KI270852.1 ENSEMBL gene 186840 186946 107.0 - 0 ENSG00000273624.1 snRNA RF00026 3 +3662 KI270852.1 HAVANA gene 166190 198391 3418.0 - 0 ENSG00000278699.4 protein_coding POTEB3 2 OTTHUMG00000190138.1 ncRNA_host +3663 KI270852.1 HAVANA gene 248281 267301 2500.0 - 0 ENSG00000281688.2 transcribed_unprocessed_pseudogene NF1P9 2 OTTHUMG00000190139.1 +3664 KI270852.1 HAVANA gene 292302 293181 880.0 + 0 ENSG00000281622.1 unprocessed_pseudogene AC020679.2 2 OTTHUMG00000190191.1 overlapping_locus +3665 KI270852.1 HAVANA gene 272030 324899 3399.0 + 0 ENSG00000281604.1 lincRNA AC020679.1 2 OTTHUMG00000190183.1 +3666 KI270852.1 HAVANA gene 403073 404156 1084.0 + 0 ENSG00000278776.1 protein_coding AC171558.6 2 OTTHUMG00000190184.1 overlapping_locus +3667 KI270852.1 HAVANA gene 416938 418134 1197.0 + 0 ENSG00000278178.2 protein_coding AC171558.5 2 OTTHUMG00000190185.1 overlapping_locus +3668 KI270852.1 HAVANA gene 310634 418371 3051.0 + 0 ENSG00000280555.2 lincRNA LINC02203 2 OTTHUMG00000190140.1 overlapping_locus +3669 KI270852.1 HAVANA gene 448034 448958 925.0 + 0 ENSG00000274846.2 unprocessed_pseudogene AC171558.2 2 OTTHUMG00000190190.1 +3670 KI270852.1 HAVANA gene 474645 475266 622.0 - 0 ENSG00000280463.1 processed_pseudogene AC171558.7 2 OTTHUMG00000190189.1 +3671 KI270853.1 ENSEMBL gene 174680 174951 272.0 - 0 ENSG00000263947.2 misc_RNA RN7SL274P 3 +3672 KI270853.1 HAVANA gene 8558 205584 4382.0 - 0 ENSG00000274829.4 protein_coding PARN 2 OTTHUMG00000191069.2 ncRNA_host +3673 KI270853.1 ENSEMBL gene 216644 216705 62.0 + 0 ENSG00000251964.2 snRNA RF00066 3 +3674 KI270853.1 HAVANA gene 205671 242094 4401.0 + 0 ENSG00000275618.2 protein_coding BFAR 2 OTTHUMG00000191071.2 ncRNA_host +3675 KI270853.1 HAVANA gene 245404 267531 1116.0 - 0 ENSG00000276870.2 protein_coding PLA2G10 2 OTTHUMG00000191072.1 +3676 KI270853.1 HAVANA gene 268429 279917 579.0 - 0 ENSG00000282427.1 antisense AC243753.1 2 OTTHUMG00000191073.1 +3677 KI270853.1 HAVANA gene 281806 299201 1473.0 + 0 ENSG00000278308.2 protein_coding NPIPA3 2 OTTHUMG00000191074.3 +3678 KI270853.1 ENSEMBL gene 511709 511808 100.0 - 0 ENSG00000275283.1 misc_RNA RF00019 3 +3679 KI270853.1 HAVANA gene 525352 565352 7320.0 + 0 ENSG00000282086.1 transcribed_unprocessed_pseudogene PKD1P6 2 OTTHUMG00000191076.2 overlapping_locus +3680 KI270853.1 HAVANA gene 560537 575265 2598.0 - 0 ENSG00000282091.1 antisense AC243651.1 2 OTTHUMG00000191075.2 overlapping_locus +3681 KI270853.1 HAVANA gene 575359 609658 4156.0 + 0 ENSG00000278494.2 protein_coding RRN3 2 OTTHUMG00000191080.1 +3682 KI270853.1 HAVANA gene 613600 631834 3540.0 + 0 ENSG00000275779.4 protein_coding NTAN1 2 OTTHUMG00000191081.2 +3683 KI270853.1 HAVANA gene 653295 653857 563.0 + 0 ENSG00000282717.1 antisense AC243651.2 2 OTTHUMG00000191084.1 +3684 KI270853.1 HAVANA gene 679516 681417 1902.0 + 0 ENSG00000278440.1 processed_pseudogene AC243791.1 2 OTTHUMG00000191085.1 +3685 KI270853.1 HAVANA gene 631355 695082 8171.0 - 0 ENSG00000275498.5 protein_coding PDXDC1 2 OTTHUMG00000191265.1 overlapping_locus +3686 KI270853.1 HAVANA gene 717613 744304 3550.0 - 0 ENSG00000281994.1 protein_coding NPIPA1 2 OTTHUMG00000191089.3 overlapping_locus +3687 KI270853.1 HAVANA gene 717617 748785 5400.0 - 0 ENSG00000282788.1 processed_transcript AC243791.3 2 OTTHUMG00000191266.1 overlapping_locus +3688 KI270853.1 ENSEMBL gene 756031 756130 100.0 + 0 ENSG00000277625.1 misc_RNA RF00019 3 +3689 KI270853.1 HAVANA gene 745435 760035 3976.0 - 0 ENSG00000281965.1 transcribed_unprocessed_pseudogene AC243791.2 2 OTTHUMG00000191091.2 overlapping_locus +3690 KI270853.1 HAVANA gene 814087 870274 4492.0 + 0 ENSG00000276709.4 protein_coding PDXDC1 2 OTTHUMG00000191082.3 +3691 KI270853.1 ENSEMBL gene 871375 871474 100.0 + 0 ENSG00000273905.1 misc_RNA RF00019 3 +3692 KI270853.1 HAVANA gene 924093 924462 370.0 + 0 ENSG00000282247.1 processed_pseudogene AC245049.1 2 OTTHUMG00000191097.1 +3693 KI270853.1 HAVANA gene 890754 953160 5816.0 - 0 ENSG00000274779.4 protein_coding NOMO1 2 OTTHUMG00000191094.2 +3694 KI270853.1 HAVANA gene 962183 966093 1083.0 + 0 ENSG00000273808.2 transcribed_unprocessed_pseudogene ABCC6P2 2 OTTHUMG00000191098.2 +3695 KI270853.1 HAVANA gene 1021570 1036314 1157.0 - 0 ENSG00000282705.1 protein_coding NPIPA5 2 OTTHUMG00000191090.2 +3696 KI270853.1 HAVANA gene 1053717 1071247 6011.0 + 0 ENSG00000275543.4 protein_coding MPV17L 2 OTTHUMG00000191099.1 overlapping_locus +3697 KI270853.1 HAVANA gene 1053717 1173341 1052.0 + 0 ENSG00000282074.1 protein_coding AC243733.1 2 OTTHUMG00000191100.2 overlapping_locus +3698 KI270853.1 HAVANA gene 1266487 1268576 530.0 + 0 ENSG00000282314.1 antisense AC243742.2 2 OTTHUMG00000191103.1 overlapping_locus +3699 KI270853.1 HAVANA gene 1092272 1283041 3591.0 + 0 ENSG00000278823.4 protein_coding C16orf45 2 OTTHUMG00000191102.1 overlapping_locus +3700 KI270853.1 HAVANA gene 1252377 1301177 10919.0 - 0 ENSG00000277140.2 protein_coding MARF1 2 OTTHUMG00000191068.3 +3701 KI270853.1 HAVANA gene 1341301 1342581 503.0 + 0 ENSG00000282255.1 sense_intronic AC243742.1 2 OTTHUMG00000191105.1 overlapping_locus +3702 KI270853.1 HAVANA gene 1359248 1360129 882.0 + 0 ENSG00000282638.1 lincRNA AC243742.3 2 OTTHUMG00000191106.1 overlapping_locus +3703 KI270853.1 HAVANA gene 1301278 1384364 5512.0 + 0 ENSG00000275911.3 protein_coding NDE1 2 OTTHUMG00000191104.2 overlapping_locus +3704 KI270853.1 HAVANA gene 1384685 1391004 836.0 + 0 ENSG00000282287.1 antisense AC243629.2 2 OTTHUMG00000191109.1 +3705 KI270853.1 HAVANA gene 1399162 1399802 550.0 + 0 ENSG00000282167.1 antisense AC243629.1 2 OTTHUMG00000191110.1 +3706 KI270853.1 HAVANA gene 1361183 1515026 16104.0 - 0 ENSG00000276480.5 protein_coding MYH11 2 OTTHUMG00000191107.2 +3707 KI270853.1 ENSEMBL gene 1535159 1535262 104.0 - 0 ENSG00000251771.2 snRNA RF00026 3 +3708 KI270853.1 HAVANA gene 1543030 1544159 536.0 + 0 ENSG00000282412.1 antisense AC243629.3 2 OTTHUMG00000191113.1 +3709 KI270853.1 HAVANA gene 1523719 1546626 2391.0 - 0 ENSG00000276914.2 protein_coding FOPNL 2 OTTHUMG00000191112.2 ncRNA_host +3710 KI270853.1 HAVANA gene 1589660 1590257 598.0 - 0 ENSG00000282445.1 processed_pseudogene RPL15P20 2 OTTHUMG00000191114.1 +3711 KI270853.1 HAVANA gene 1752050 1753068 413.0 - 0 ENSG00000281929.1 processed_pseudogene RPL17P40 2 OTTHUMG00000191117.1 +3712 KI270853.1 HAVANA gene 1607547 1800966 7528.0 + 0 ENSG00000278183.4 protein_coding ABCC1 2 OTTHUMG00000191115.2 +3713 KI270853.1 HAVANA gene 1806848 1881517 7575.0 - 0 ENSG00000275331.5 protein_coding ABCC6 2 OTTHUMG00000191118.2 +3714 KI270853.1 HAVANA gene 1881022 1882256 542.0 + 0 ENSG00000282574.1 antisense AC243824.1 2 OTTHUMG00000191120.1 +3715 KI270853.1 HAVANA gene 1918864 1919233 370.0 - 0 ENSG00000282597.1 processed_pseudogene AC244489.4 2 OTTHUMG00000191122.1 +3716 KI270853.1 HAVANA gene 1948140 1950247 567.0 - 0 ENSG00000282332.1 antisense AC244489.3 2 OTTHUMG00000191123.1 overlapping_locus +3717 KI270853.1 HAVANA gene 1890490 1952819 8274.0 + 0 ENSG00000278087.4 protein_coding NOMO3 2 OTTHUMG00000191121.1 +3718 KI270853.1 ENSEMBL gene 1972085 1972184 100.0 - 0 ENSG00000277242.1 misc_RNA RF00019 3 +3719 KI270853.1 HAVANA gene 1991058 2009784 2475.0 + 0 ENSG00000273807.2 protein_coding AC244489.1 2 OTTHUMG00000191382.1 overlapping_locus +3720 KI270853.1 HAVANA gene 1968103 2038554 11099.0 + 0 ENSG00000282522.1 transcribed_unprocessed_pseudogene PKD1P1 2 OTTHUMG00000191077.2 overlapping_locus +3721 KI270853.1 ENSEMBL gene 2040292 2054986 1131.0 + 0 ENSG00000277983.1 protein_coding AC244489.2 3 +3722 KI270853.1 HAVANA gene 2202277 2202907 631.0 - 0 ENSG00000282528.1 processed_pseudogene AC246789.1 2 OTTHUMG00000191125.1 +3723 KI270853.1 HAVANA gene 2319166 2325077 674.0 + 0 ENSG00000282744.1 lincRNA AC246789.2 2 OTTHUMG00000191126.1 +3724 KI270853.1 HAVANA gene 2421841 2423401 1561.0 + 0 ENSG00000281975.1 TEC AC243615.1 2 OTTHUMG00000191127.1 +3725 KI270853.1 HAVANA gene 2613463 2614429 967.0 - 0 ENSG00000282713.1 processed_pseudogene AC098965.2 2 OTTHUMG00000191128.1 +3726 KI270854.1 HAVANA gene 972 11633 4046.0 + 0 ENSG00000274296.3 protein_coding DECR2 2 OTTHUMG00000190831.2 overlapping_locus +3727 KI270854.1 HAVANA gene 23389 23689 301.0 - 0 ENSG00000282201.1 lincRNA AL023881.2 2 OTTHUMG00000190832.1 +3728 KI270854.1 ENSEMBL gene 38443 38543 101.0 - 0 ENSG00000274018.1 misc_RNA RF00019 3 +3729 KI270854.1 HAVANA gene 50547 52284 278.0 + 0 ENSG00000282378.1 transcribed_unprocessed_pseudogene AC208188.1 2 OTTHUMG00000190834.1 overlapping_locus +3730 KI270854.1 HAVANA gene 24765 125679 6319.0 + 0 ENSG00000275338.4 protein_coding RAB11FIP3 2 OTTHUMG00000190833.2 overlapping_locus +3731 KI270854.1 HAVANA gene 127823 130075 2253.0 - 0 ENSG00000282485.1 lincRNA LINC00235 2 OTTHUMG00000190836.1 +3732 KI270854.1 HAVANA gene 130385 130697 313.0 + 0 ENSG00000282214.1 processed_transcript CAPN15 2 OTTHUMG00000190837.1 +3733 KI270855.1 HAVANA gene 25031 28704 340.0 - 0 ENSG00000282703.1 lincRNA GLIS2-AS1 2 OTTHUMG00000190857.1 +3734 KI270855.1 HAVANA gene 15125 39961 4469.0 + 0 ENSG00000274636.2 protein_coding GLIS2 2 OTTHUMG00000190856.1 +3735 KI270855.1 HAVANA gene 49018 50972 1955.0 - 0 ENSG00000282011.1 TEC AC004789.1 2 OTTHUMG00000190860.1 overlapping_locus +3736 KI270855.1 HAVANA gene 31913 56943 2368.0 - 0 ENSG00000282228.1 protein_coding PAM16 2 OTTHUMG00000190858.1 overlapping_locus +3737 KI270855.1 HAVANA gene 74171 85851 2806.0 + 0 ENSG00000274334.1 protein_coding VASN 2 OTTHUMG00000190862.1 +3738 KI270855.1 HAVANA gene 40615 122817 3815.0 - 0 ENSG00000278760.4 protein_coding CORO7-PAM16 2 OTTHUMG00000190859.1 overlapping_locus +3739 KI270855.1 HAVANA gene 56867 128028 8793.0 - 0 ENSG00000282725.1 protein_coding CORO7 2 OTTHUMG00000190861.3 overlapping_locus +3740 KI270855.1 HAVANA gene 129225 129703 479.0 + 0 ENSG00000282450.1 sense_intronic AC012676.7 2 OTTHUMG00000190864.1 overlapping_locus +3741 KI270855.1 HAVANA gene 132845 133426 582.0 + 0 ENSG00000282590.1 sense_intronic AC012676.8 2 OTTHUMG00000190865.1 overlapping_locus +3742 KI270855.1 HAVANA gene 135525 135710 186.0 - 0 ENSG00000282374.1 processed_pseudogene AC012676.6 2 OTTHUMG00000190866.1 +3743 KI270855.1 HAVANA gene 128128 159098 7071.0 + 0 ENSG00000276726.4 protein_coding DNAJA3 2 OTTHUMG00000190863.2 overlapping_locus +3744 KI270855.1 HAVANA gene 164003 198086 3541.0 - 0 ENSG00000274684.4 protein_coding NMRAL1 2 OTTHUMG00000190867.2 +3745 KI270855.1 HAVANA gene 177013 212670 3793.0 + 0 ENSG00000277424.4 protein_coding HMOX2 2 OTTHUMG00000190868.2 +3746 KI270855.1 HAVANA gene 212998 226625 3666.0 - 0 ENSG00000274336.2 protein_coding CDIP1 2 OTTHUMG00000190870.3 +3747 KI270856.1 HAVANA gene 8416 14375 724.0 - 0 ENSG00000282469.1 lincRNA LINC00254 2 OTTHUMG00000190852.1 overlapping_locus +3748 KI270856.1 HAVANA gene 2131 14425 451.0 - 0 ENSG00000282650.1 processed_transcript MEIOB 2 OTTHUMG00000190850.1 +3749 KI270856.1 HAVANA gene 19242 20561 484.0 + 0 ENSG00000282069.1 lincRNA LINC02124 2 OTTHUMG00000190854.1 +3750 KI270856.1 HAVANA gene 41593 48570 1273.0 - 0 ENSG00000276333.2 protein_coding HS3ST6 2 OTTHUMG00000190855.1 +3751 KI270857.1 HAVANA gene 405 30239 3011.0 - 0 ENSG00000278843.4 protein_coding MMP28 2 OTTHUMG00000191183.2 +3752 KI270857.1 HAVANA gene 43021 43429 409.0 - 0 ENSG00000282384.1 lincRNA AC015849.11 2 OTTHUMG00000191184.1 +3753 KI270857.1 HAVANA gene 52931 58245 421.0 + 0 ENSG00000282083.1 sense_overlapping AC015849.7 2 OTTHUMG00000191187.1 +3754 KI270857.1 HAVANA gene 51249 64825 488.0 - 0 ENSG00000282202.1 antisense AC015849.10 2 OTTHUMG00000191186.1 +3755 KI270857.1 HAVANA gene 95625 96098 474.0 - 0 ENSG00000282115.1 processed_pseudogene AC015849.8 2 OTTHUMG00000191189.1 +3756 KI270857.1 HAVANA gene 43987 99147 5602.0 + 0 ENSG00000276833.2 protein_coding TAF15 2 OTTHUMG00000191185.2 +3757 KI270857.1 HAVANA gene 89478 103423 2930.0 - 0 ENSG00000276986.2 protein_coding HEATR9 2 OTTHUMG00000191188.1 +3758 KI270857.1 HAVANA gene 106023 115325 1512.0 - 0 ENSG00000274233.4 protein_coding CCL5 2 OTTHUMG00000191191.1 +3759 KI270857.1 HAVANA gene 103499 120395 755.0 + 0 ENSG00000282498.1 antisense AC015849.12 2 OTTHUMG00000191190.1 +3760 KI270857.1 ENSEMBL gene 124090 124336 247.0 + 0 ENSG00000274262.1 misc_RNA RF00100 3 +3761 KI270857.1 HAVANA gene 128239 145555 5749.0 - 0 ENSG00000282124.1 lincRNA AC015849.9 2 OTTHUMG00000191192.1 +3762 KI270857.1 HAVANA gene 147167 152542 5376.0 - 0 ENSG00000282486.1 processed_pseudogene LRRC37A9P 2 OTTHUMG00000191193.1 +3763 KI270857.1 HAVANA gene 152598 165305 1975.0 - 0 ENSG00000276432.4 protein_coding RDM1 2 OTTHUMG00000191194.2 +3764 KI270857.1 HAVANA gene 169050 178231 1126.0 - 0 ENSG00000277042.2 protein_coding LYZL6 2 OTTHUMG00000191195.1 +3765 KI270857.1 HAVANA gene 198034 200008 407.0 - 0 ENSG00000282525.1 transcribed_unprocessed_pseudogene AC004675.2 2 OTTHUMG00000191196.1 +3766 KI270857.1 HAVANA gene 211057 216060 1744.0 - 0 ENSG00000275095.2 protein_coding CCL16 2 OTTHUMG00000191197.1 +3767 KI270857.1 HAVANA gene 217855 221568 3269.0 - 0 ENSG00000277236.4 protein_coding CCL14 2 OTTHUMG00000191198.2 +3768 KI270857.1 HAVANA gene 218220 224834 3952.0 + 0 ENSG00000282446.1 antisense AC004675.1 2 OTTHUMG00000191199.1 +3769 KI270857.1 HAVANA gene 218220 236188 1047.0 - 0 ENSG00000282521.1 protein_coding CCL15-CCL14 2 OTTHUMG00000191200.1 +3770 KI270857.1 HAVANA gene 231004 236612 1567.0 - 0 ENSG00000275528.2 protein_coding CCL15 2 OTTHUMG00000191201.1 +3771 KI270857.1 HAVANA gene 244130 246186 1721.0 + 0 ENSG00000282588.1 antisense AC069363.2 2 OTTHUMG00000191202.1 +3772 KI270857.1 HAVANA gene 247072 247459 388.0 + 0 ENSG00000282071.1 lincRNA AC069363.1 2 OTTHUMG00000191203.1 +3773 KI270857.1 HAVANA gene 247624 252533 738.0 - 0 ENSG00000276114.2 protein_coding CCL23 2 OTTHUMG00000191204.1 +3774 KI270857.1 HAVANA gene 299168 306920 1397.0 + 0 ENSG00000278167.2 protein_coding CCL18 2 OTTHUMG00000191205.1 +3775 KI270857.1 HAVANA gene 307754 325008 1580.0 + 0 ENSG00000282721.1 antisense AC069363.3 2 OTTHUMG00000191206.1 +3776 KI270857.1 HAVANA gene 323130 325043 1494.0 - 0 ENSG00000274221.2 protein_coding CCL3 2 OTTHUMG00000191208.1 +3777 KI270857.1 HAVANA gene 338511 340542 2032.0 + 0 ENSG00000275824.4 protein_coding CCL4 2 OTTHUMG00000191209.1 +3778 KI270857.1 ENSEMBL gene 345071 345368 298.0 + 0 ENSG00000278781.1 misc_RNA RF00017 3 +3779 KI270857.1 HAVANA gene 397740 397824 85.0 + 0 ENSG00000275347.2 processed_pseudogene AC003976.1 2 OTTHUMG00000191211.1 +3780 KI270857.1 HAVANA gene 400589 411524 2844.0 - 0 ENSG00000274939.2 protein_coding TBC1D3B 2 OTTHUMG00000191212.1 +3781 KI270857.1 HAVANA gene 351098 412398 610.0 + 0 ENSG00000282348.1 antisense AC003976.2 2 OTTHUMG00000191210.1 +3782 KI270857.1 HAVANA gene 418139 431375 1401.0 + 0 ENSG00000282231.1 antisense AC233699.4 2 OTTHUMG00000191213.1 +3783 KI270857.1 HAVANA gene 429773 431662 1469.0 - 0 ENSG00000277336.2 protein_coding CCL3L3 2 OTTHUMG00000191214.1 +3784 KI270857.1 HAVANA gene 445828 447782 1397.0 + 0 ENSG00000276125.4 protein_coding CCL4L2 2 OTTHUMG00000191215.1 +3785 KI270857.1 HAVANA gene 460150 461711 247.0 - 0 ENSG00000282370.1 lincRNA AC233699.5 2 OTTHUMG00000191216.1 +3786 KI270857.1 HAVANA gene 469351 469458 108.0 - 0 ENSG00000281967.1 unprocessed_pseudogene AC233699.2 2 OTTHUMG00000191217.1 +3787 KI270857.1 HAVANA gene 476605 476710 106.0 + 0 ENSG00000281992.1 processed_pseudogene AC233699.3 2 OTTHUMG00000191218.1 +3788 KI270857.1 HAVANA gene 488543 499457 2105.0 - 0 ENSG00000282144.2 protein_coding TBC1D3I 2 OTTHUMG00000191219.2 +3789 KI270857.1 ENSEMBL gene 520216 520317 102.0 + 0 ENSG00000278320.1 misc_RNA RF00019 3 +3790 KI270857.1 HAVANA gene 509095 555451 1168.0 + 0 ENSG00000282411.1 unprocessed_pseudogene AC233699.6 2 OTTHUMG00000191220.1 +3791 KI270857.1 HAVANA gene 558788 569663 2065.0 + 0 ENSG00000275760.4 protein_coding TBC1D3G 2 OTTHUMG00000191221.1 +3792 KI270857.1 HAVANA gene 612435 623327 2065.0 - 0 ENSG00000277974.5 protein_coding TBC1D3H 2 OTTHUMG00000191222.1 +3793 KI270857.1 ENSEMBL gene 639730 639836 107.0 - 0 ENSG00000278515.1 snRNA RF00026 3 +3794 KI270857.1 HAVANA gene 663522 674470 2117.0 - 0 ENSG00000282087.2 protein_coding TBC1D3F 2 OTTHUMG00000191303.1 +3795 KI270857.1 HAVANA gene 684862 692439 1614.0 - 0 ENSG00000282656.1 unprocessed_pseudogene TBC1D3J 2 OTTHUMG00000191223.1 +3796 KI270857.1 ENSEMBL gene 726103 726226 124.0 - 0 ENSG00000277395.1 rRNA RF00001 3 +3797 KI270857.1 HAVANA gene 721533 734214 6687.0 + 0 ENSG00000278574.4 protein_coding ZNHIT3 2 OTTHUMG00000191224.3 +3798 KI270857.1 HAVANA gene 769924 774214 2799.0 + 0 ENSG00000275600.2 protein_coding PIGW 2 OTTHUMG00000191226.3 +3799 KI270857.1 HAVANA gene 730537 778339 13075.0 - 0 ENSG00000278372.4 protein_coding MYO19 2 OTTHUMG00000191225.2 +3800 KI270857.1 HAVANA gene 809366 810229 864.0 - 0 ENSG00000282707.1 processed_pseudogene AC003042.2 2 OTTHUMG00000191228.1 +3801 KI270857.1 HAVANA gene 779792 825343 9729.0 + 0 ENSG00000275099.2 protein_coding GGNBP2 2 OTTHUMG00000191227.2 +3802 KI270857.1 HAVANA gene 827293 836300 5462.0 + 0 ENSG00000275397.2 protein_coding DHRS11 2 OTTHUMG00000191229.2 +3803 KI270857.1 HAVANA gene 837066 844472 1857.0 + 0 ENSG00000274853.2 protein_coding MRM1 2 OTTHUMG00000191230.1 +3804 KI270857.1 HAVANA gene 869592 870221 630.0 + 0 ENSG00000282570.1 lincRNA AC003042.1 2 OTTHUMG00000191231.1 +3805 KI270857.1 HAVANA gene 920268 920643 376.0 + 0 ENSG00000282028.1 lincRNA AC015938.1 2 OTTHUMG00000191232.1 +3806 KI270857.1 HAVANA gene 957959 961716 455.0 + 0 ENSG00000282237.1 lincRNA AC015938.2 2 OTTHUMG00000191233.1 +3807 KI270857.1 HAVANA gene 1098000 1173025 2544.0 - 0 ENSG00000281998.1 antisense LHX1-DT 2 OTTHUMG00000191234.1 +3808 KI270857.1 HAVANA gene 1176411 1179820 546.0 - 0 ENSG00000282454.1 antisense AC023315.1 2 OTTHUMG00000191236.1 +3809 KI270857.1 HAVANA gene 1173149 1180977 4883.0 + 0 ENSG00000274577.2 protein_coding LHX1 2 OTTHUMG00000191235.1 +3810 KI270857.1 HAVANA gene 1216531 1216786 256.0 + 0 ENSG00000282636.1 sense_intronic AC023315.2 2 OTTHUMG00000191238.1 +3811 KI270857.1 HAVANA gene 1234962 1236398 710.0 + 0 ENSG00000282805.1 sense_intronic AC023315.3 2 OTTHUMG00000191239.1 +3812 KI270857.1 HAVANA gene 1271030 1279615 411.0 + 0 ENSG00000282043.1 sense_intronic AC003103.1 2 OTTHUMG00000191240.1 +3813 KI270857.1 HAVANA gene 1281825 1289140 718.0 - 0 ENSG00000282166.1 antisense AC003103.2 2 OTTHUMG00000191241.1 +3814 KI270857.1 HAVANA gene 1185240 1293236 4714.0 + 0 ENSG00000276072.2 protein_coding AATF 2 OTTHUMG00000191237.1 +3815 KI270857.1 HAVANA gene 1376601 1377414 814.0 - 0 ENSG00000282532.1 processed_pseudogene AC016482.2 2 OTTHUMG00000191243.1 +3816 KI270857.1 HAVANA gene 1379596 1380452 857.0 - 0 ENSG00000282695.1 transcribed_processed_pseudogene HMGB1P24 2 OTTHUMG00000191244.1 +3817 KI270857.1 HAVANA gene 1398595 1399118 524.0 + 0 ENSG00000282489.1 processed_pseudogene AC016482.1 2 OTTHUMG00000191245.1 +3818 KI270857.1 HAVANA gene 1622886 1623926 735.0 + 0 ENSG00000282806.1 sense_intronic AC068400.2 2 OTTHUMG00000191247.1 +3819 KI270857.1 HAVANA gene 1611993 1628727 1919.0 + 0 ENSG00000278145.2 protein_coding C17orf78 2 OTTHUMG00000191246.1 +3820 KI270857.1 HAVANA gene 1320988 1645974 13009.0 - 0 ENSG00000275176.4 protein_coding ACACA 2 OTTHUMG00000191242.2 +3821 KI270857.1 HAVANA gene 1647088 1647746 293.0 - 0 ENSG00000282790.1 antisense AC068400.1 2 OTTHUMG00000191248.1 +3822 KI270857.1 HAVANA gene 1693338 1694098 443.0 + 0 ENSG00000282015.1 processed_pseudogene AC004099.1 2 OTTHUMG00000191253.1 +3823 KI270857.1 HAVANA gene 1646030 1718900 5654.0 + 0 ENSG00000277104.4 protein_coding TADA2A 2 OTTHUMG00000191252.2 +3824 KI270857.1 HAVANA gene 1729002 1752668 2499.0 + 0 ENSG00000275932.2 protein_coding DUSP14 2 OTTHUMG00000191254.1 +3825 KI270857.1 HAVANA gene 1753965 1848609 14277.0 - 0 ENSG00000274047.4 protein_coding SYNRG 2 OTTHUMG00000191255.2 +3826 KI270857.1 HAVANA gene 1848852 1882558 9543.0 - 0 ENSG00000277594.2 protein_coding DDX52 2 OTTHUMG00000191256.1 +3827 KI270857.1 HAVANA gene 1925499 1984303 5963.0 - 0 ENSG00000276194.4 protein_coding HNF1B 2 OTTHUMG00000191257.1 +3828 KI270857.1 HAVANA gene 2037934 2041824 478.0 - 0 ENSG00000282632.1 lincRNA AC113211.1 2 OTTHUMG00000191258.1 +3829 KI270857.1 HAVANA gene 2066990 2123428 2998.0 - 0 ENSG00000282630.1 transcribed_unprocessed_pseudogene YWHAEP7 2 OTTHUMG00000191259.1 +3830 KI270857.1 ENSEMBL gene 2146566 2146672 107.0 + 0 ENSG00000277891.1 snRNA RF00026 3 +3831 KI270857.1 HAVANA gene 2163025 2173974 2116.0 + 0 ENSG00000275153.4 protein_coding TBC1D3K 2 OTTHUMG00000191260.1 +3832 KI270857.1 HAVANA gene 2216782 2227731 2116.0 - 0 ENSG00000276349.4 protein_coding TBC1D3L 2 OTTHUMG00000191261.1 +3833 KI270857.1 ENSEMBL gene 2266140 2266241 102.0 - 0 ENSG00000276153.1 misc_RNA RF00019 3 +3834 KI270857.1 HAVANA gene 2231008 2292224 1419.0 - 0 ENSG00000282641.1 unprocessed_pseudogene AC183084.1 2 OTTHUMG00000191304.1 +3835 KI270857.1 HAVANA gene 2332054 2358166 1705.0 + 0 ENSG00000277936.4 protein_coding MRPL45 2 OTTHUMG00000191262.1 +3836 KI270857.1 HAVANA gene 2360558 2378758 7980.0 - 0 ENSG00000276469.1 protein_coding GPR179 2 OTTHUMG00000191263.1 +3837 KI270857.1 HAVANA gene 2387176 2440912 8621.0 + 0 ENSG00000274229.2 protein_coding SOCS7 2 OTTHUMG00000191264.2 +3838 KI270857.1 HAVANA gene 2485704 2487754 1248.0 - 0 ENSG00000282205.1 processed_transcript AC115090.1 2 OTTHUMG00000191268.1 +3839 KI270857.1 HAVANA gene 2463728 2547694 8013.0 + 0 ENSG00000273780.2 protein_coding ARHGAP23 2 OTTHUMG00000191267.2 +3840 KI270857.1 HAVANA gene 2636368 2638020 571.0 + 0 ENSG00000282217.1 antisense AC006449.8 2 OTTHUMG00000191270.1 +3841 KI270857.1 HAVANA gene 2565317 2641249 11658.0 - 0 ENSG00000273608.4 protein_coding SRCIN1 2 OTTHUMG00000191269.2 +3842 KI270857.1 HAVANA gene 2707022 2710740 3719.0 - 0 ENSG00000277303.2 protein_coding EPOP 2 OTTHUMG00000191271.1 +3843 KI270857.1 HAVANA gene 2737771 2740066 2296.0 + 0 ENSG00000282494.1 lincRNA AC006449.9 2 OTTHUMG00000191272.1 +3844 KI270857.1 ENSEMBL gene 2763152 2763517 366.0 - 0 ENSG00000277005.1 protein_coding AC006449.4 3 +3845 KI270857.1 HAVANA gene 2740861 2765122 13315.0 + 0 ENSG00000275851.4 protein_coding MLLT6 2 OTTHUMG00000191273.1 +3846 KI270857.1 ENSEMBL gene 2767121 2767239 119.0 - 0 ENSG00000278779.1 rRNA RF00001 3 +3847 KI270857.1 HAVANA gene 2765554 2770363 2663.0 + 0 ENSG00000274768.2 protein_coding CISD3 2 OTTHUMG00000191274.1 +3848 KI270857.1 HAVANA gene 2769216 2785136 3511.0 - 0 ENSG00000278644.2 protein_coding PCGF2 2 OTTHUMG00000191275.1 +3849 KI270857.1 HAVANA gene 2784679 2786776 2098.0 + 0 ENSG00000282749.1 antisense AC006449.10 2 OTTHUMG00000191276.1 +3850 KI270857.1 ENSEMBL gene 2790598 2790719 122.0 - 0 ENSG00000277546.1 snRNA RF00026 3 +3851 KI270857.1 HAVANA gene 2788055 2799550 1179.0 + 0 ENSG00000275903.2 protein_coding PSMB3 2 OTTHUMG00000191277.2 +3852 KI270857.1 HAVANA gene 2801008 2835445 6135.0 - 0 ENSG00000277292.2 protein_coding PIP4K2B 2 OTTHUMG00000191278.2 +3853 KI270857.1 HAVANA gene 2835753 2860800 3848.0 - 0 ENSG00000276761.2 protein_coding CWC25 2 OTTHUMG00000191279.1 +3854 KI270857.1 HAVANA gene 2870407 2876774 632.0 - 0 ENSG00000276913.2 protein_coding C17orf98 2 OTTHUMG00000191280.1 +3855 KI270858.1 HAVANA gene 11821 12762 570.0 + 0 ENSG00000282257.1 lincRNA AC118653.2 2 OTTHUMG00000191306.1 +3856 KI270858.1 HAVANA gene 36461 36919 459.0 + 0 ENSG00000275193.2 processed_pseudogene MYL6P5 2 OTTHUMG00000191307.1 +3857 KI270859.1 HAVANA gene 5709 6388 624.0 + 0 ENSG00000282385.1 antisense AC240577.1 2 OTTHUMG00000191309.1 +3858 KI270859.1 HAVANA gene 4470 16476 532.0 - 0 ENSG00000282291.1 protein_coding SLC39A11 2 OTTHUMG00000191308.3 overlapping_locus +3859 KI270860.1 HAVANA gene 4591 24134 6375.0 - 0 ENSG00000275031.2 protein_coding METRNL 2 OTTHUMG00000191316.1 +3860 KI270860.1 HAVANA gene 119720 122933 628.0 - 0 ENSG00000281945.1 antisense AC127518.1 2 OTTHUMG00000191318.1 +3861 KI270860.1 HAVANA gene 51111 159270 6891.0 + 0 ENSG00000277033.2 protein_coding B3GNTL1 2 OTTHUMG00000191317.1 +3862 KI270860.1 HAVANA gene 155503 177989 8459.0 - 0 ENSG00000278759.2 protein_coding TBCD 2 OTTHUMG00000191319.2 overlapping_locus +3863 KI270861.1 ENSEMBL gene 34402 34700 299.0 - 0 ENSG00000273968.1 misc_RNA RN7SL105P 3 +3864 KI270861.1 HAVANA gene 1 58914 9900.0 - 0 ENSG00000278550.4 protein_coding SLC43A2 2 OTTHUMG00000191160.1 ncRNA_host +3865 KI270861.1 HAVANA gene 63886 75775 4961.0 - 0 ENSG00000276336.4 protein_coding SCARF1 2 OTTHUMG00000191161.1 +3866 KI270861.1 HAVANA gene 76173 80105 2103.0 - 0 ENSG00000274145.2 protein_coding RILP 2 OTTHUMG00000191162.1 +3867 KI270861.1 HAVANA gene 80657 114910 11355.0 - 0 ENSG00000274442.2 protein_coding PRPF8 2 OTTHUMG00000191163.2 +3868 KI270861.1 HAVANA gene 132818 140466 5971.0 - 0 ENSG00000275246.2 protein_coding TLCD2 2 OTTHUMG00000191164.1 +3869 KI270861.1 HAVANA gene 141521 147202 2986.0 - 0 ENSG00000282800.1 lincRNA MIR22HG 2 OTTHUMG00000191165.1 +3870 KI270861.1 HAVANA gene 146551 168638 7910.0 + 0 ENSG00000276021.4 protein_coding WDR81 2 OTTHUMG00000191166.3 +3871 KI270861.1 HAVANA gene 171788 184217 2348.0 + 0 ENSG00000276838.4 protein_coding SERPINF2 2 OTTHUMG00000191167.2 +3872 KI270861.1 HAVANA gene 190908 195943 850.0 + 0 ENSG00000282307.1 protein_coding SERPINF1 2 OTTHUMG00000191168.3 +3873 KI270862.1 HAVANA gene 17546 19017 784.0 - 0 ENSG00000280563.1 protein_coding NXN 2 OTTHUMG00000190120.3 +3874 KI270862.1 HAVANA gene 36364 42918 3194.0 + 0 ENSG00000277649.2 protein_coding TIMM22 2 OTTHUMG00000190121.1 +3875 KI270862.1 ENSEMBL gene 144554 144820 267.0 - 0 ENSG00000273728.1 misc_RNA RF00017 3 +3876 KI270862.1 HAVANA gene 199812 200021 210.0 + 0 ENSG00000281251.1 processed_pseudogene AC107911.1 2 OTTHUMG00000190123.1 +3877 KI270862.1 HAVANA gene 226365 229558 235.0 + 0 ENSG00000281590.1 antisense AC107911.2 2 OTTHUMG00000190124.1 +3878 KI270862.1 HAVANA gene 42766 231794 11324.0 - 0 ENSG00000278741.4 protein_coding ABR 2 OTTHUMG00000190122.2 ncRNA_host +3879 KI270862.1 HAVANA gene 240276 243012 2737.0 + 0 ENSG00000280938.1 polymorphic_pseudogene TRARG1 2 OTTHUMG00000190125.1 +3880 KI270862.1 HAVANA gene 286301 342404 3844.0 - 0 ENSG00000274474.3 protein_coding YWHAE 2 OTTHUMG00000190126.1 +3881 KI270863.1 HAVANA gene 13339 25889 6158.0 + 0 ENSG00000281942.1 processed_transcript AC068473.6 2 OTTHUMG00000191333.1 +3882 KI270863.1 HAVANA gene 47521 49077 585.0 + 0 ENSG00000281995.1 lincRNA AC215996.1 2 OTTHUMG00000191334.1 +3883 KI270863.1 HAVANA gene 119920 121991 2072.0 - 0 ENSG00000282330.1 lincRNA AC068473.8 2 OTTHUMG00000191336.1 overlapping_locus +3884 KI270863.1 HAVANA gene 81561 122378 1111.0 - 0 ENSG00000282606.1 lincRNA AC068473.9 2 OTTHUMG00000191335.1 overlapping_locus +3885 KI270863.1 HAVANA gene 145354 146284 474.0 - 0 ENSG00000281949.1 antisense AC068473.7 2 OTTHUMG00000191338.1 +3886 KI270863.1 HAVANA gene 122434 160649 3150.0 + 0 ENSG00000282752.1 protein_coding CTDP1 2 OTTHUMG00000191337.2 +3887 KI270865.1 HAVANA gene 222 49566 6011.0 - 0 ENSG00000278788.4 protein_coding SBNO2 2 OTTHUMG00000191345.2 +3888 KI270866.1 HAVANA gene 708 4780 3019.0 + 0 ENSG00000282735.1 protein_coding KIAA0355 2 OTTHUMG00000191346.1 +3889 KI270866.1 HAVANA gene 7679 8606 520.0 - 0 ENSG00000282746.1 antisense AC010504.2 2 OTTHUMG00000191347.1 +3890 KI270866.1 HAVANA gene 8674 30733 2159.0 + 0 ENSG00000282019.1 protein_coding GPI 2 OTTHUMG00000191348.2 overlapping_locus +3891 KI270867.1 HAVANA gene 4498 8694 1581.0 + 0 ENSG00000280501.2 protein_coding CEACAM7 2 OTTHUMG00000189943.1 +3892 KI270867.1 HAVANA gene 29038 29325 288.0 - 0 ENSG00000281424.1 processed_pseudogene AC243960.10 2 OTTHUMG00000189944.1 +3893 KI270867.1 HAVANA gene 41399 42342 255.0 + 0 ENSG00000280545.1 processed_pseudogene AC243960.8 2 OTTHUMG00000189945.1 +3894 KI270867.1 HAVANA gene 43102 43432 331.0 + 0 ENSG00000281659.1 processed_pseudogene DNAJC19P3 2 OTTHUMG00000189946.1 +3895 KI270867.1 HAVANA gene 54927 63030 1364.0 + 0 ENSG00000274131.3 protein_coding CEACAM4 2 OTTHUMG00000189947.1 +3896 KI270867.1 HAVANA gene 76330 76660 302.0 + 0 ENSG00000281505.1 processed_pseudogene DNAJC19P2 2 OTTHUMG00000189949.1 +3897 KI270867.1 HAVANA gene 76017 82266 1927.0 - 0 ENSG00000280470.1 transcribed_unprocessed_pseudogene CEACAMP3 2 OTTHUMG00000189948.1 +3898 KI270867.1 HAVANA gene 129727 130433 707.0 + 0 ENSG00000281224.1 TEC AC243960.9 2 OTTHUMG00000189952.1 +3899 KI270867.1 HAVANA gene 126539 132481 1435.0 - 0 ENSG00000281556.2 lincRNA AC243960.11 2 OTTHUMG00000189951.1 overlapping_locus +3900 KI270867.1 HAVANA gene 95157 132483 1922.0 - 0 ENSG00000278565.4 protein_coding CEACAM21 2 OTTHUMG00000189950.2 overlapping_locus +3901 KI270867.1 HAVANA gene 145097 146819 1723.0 - 0 ENSG00000280540.1 lincRNA LINC01480 2 OTTHUMG00000189953.1 +3902 KI270867.1 HAVANA gene 158317 159137 821.0 - 0 ENSG00000281382.1 lincRNA AC236970.1 2 OTTHUMG00000189954.1 +3903 KI270867.1 HAVANA gene 168354 169300 894.0 + 0 ENSG00000274857.2 processed_pseudogene PLEKHA3P1 2 OTTHUMG00000189955.1 +3904 KI270867.1 HAVANA gene 183445 184191 747.0 - 0 ENSG00000276944.2 processed_pseudogene AC243960.6 2 OTTHUMG00000189956.1 +3905 KI270867.1 HAVANA gene 189699 211262 1153.0 + 0 ENSG00000280726.2 lincRNA PCAT19 2 OTTHUMG00000189957.1 +3906 KI270868.1 HAVANA gene 328 820 493.0 - 0 ENSG00000282283.1 protein_coding PLPPR3 2 OTTHUMG00000191339.3 +3907 KI270868.1 HAVANA gene 3940 10861 1783.0 + 0 ENSG00000278624.2 protein_coding AZU1 2 OTTHUMG00000191340.1 +3908 KI270868.1 HAVANA gene 19803 27018 1146.0 + 0 ENSG00000277804.4 protein_coding PRTN3 2 OTTHUMG00000191341.1 +3909 KI270868.1 HAVANA gene 29849 35133 1028.0 + 0 ENSG00000277571.2 protein_coding ELANE 2 OTTHUMG00000191342.1 +3910 KI270868.1 HAVANA gene 38523 42509 1222.0 + 0 ENSG00000274619.2 protein_coding CFD 2 OTTHUMG00000191343.2 +3911 KI270868.1 HAVANA gene 46856 60469 2282.0 - 0 ENSG00000282092.1 protein_coding MED16 2 OTTHUMG00000191344.2 +3912 KI270869.1 HAVANA gene 8605 54269 5377.0 + 0 ENSG00000280641.2 protein_coding CDH4 2 OTTHUMG00000190281.1 overlapping_locus +3913 KI270869.1 HAVANA gene 64040 118774 7267.0 - 0 ENSG00000280529.2 protein_coding TAF4 2 OTTHUMG00000190282.2 overlapping_locus +3914 KI270870.1 HAVANA gene 2748 5589 2724.0 + 0 ENSG00000277044.3 protein_coding OPRL1 2 OTTHUMG00000190289.1 +3915 KI270870.1 HAVANA gene 10766 12117 1352.0 - 0 ENSG00000277339.2 protein_coding NPBWR2 2 OTTHUMG00000190290.1 +3916 KI270870.1 HAVANA gene 48726 52236 561.0 - 0 ENSG00000280695.1 lincRNA AC226131.1 2 OTTHUMG00000190303.1 +3917 KI270870.1 HAVANA gene 60383 150844 6265.0 + 0 ENSG00000276876.4 protein_coding MYT1 2 OTTHUMG00000190291.1 +3918 KI270870.1 HAVANA gene 164332 183433 5188.0 + 0 ENSG00000280663.4 protein_coding PCMTD2 2 OTTHUMG00000190305.3 +3919 KI270870.1 HAVANA gene 116664 183433 5154.0 + 0 ENSG00000275018.6 protein_coding AL121581.1 2 OTTHUMG00000190304.1 +3920 KI270871.1 HAVANA gene 7549 9835 519.0 + 0 ENSG00000281914.1 antisense AL353658.3 2 OTTHUMG00000190286.1 +3921 KI270871.1 HAVANA gene 34453 35731 789.0 + 0 ENSG00000281651.1 antisense AC210433.1 2 OTTHUMG00000190287.1 +3922 KI270871.1 HAVANA gene 183 51430 3045.0 - 0 ENSG00000281151.2 protein_coding KCNQ2 2 OTTHUMG00000190285.2 +3923 KI270872.1 HAVANA gene 10673 11706 500.0 + 0 ENSG00000280541.1 antisense FTCD-AS1 2 OTTHUMG00000189934.1 +3924 KI270872.1 HAVANA gene 1168 14626 2375.0 - 0 ENSG00000281775.2 protein_coding FTCD 2 OTTHUMG00000189933.2 fragmented_locus +3925 KI270872.1 HAVANA gene 20585 45846 2333.0 - 0 ENSG00000274679.4 protein_coding SPATC1L 2 OTTHUMG00000189935.1 +3926 KI270872.1 HAVANA gene 46449 50311 557.0 + 0 ENSG00000281753.1 antisense AP001468.2 2 OTTHUMG00000189936.1 +3927 KI270872.1 HAVANA gene 49511 80942 6244.0 - 0 ENSG00000281289.2 protein_coding LSS 2 OTTHUMG00000189937.1 +3928 KI270873.1 HAVANA gene 451 9253 1322.0 - 0 ENSG00000281484.2 protein_coding BTG3 2 OTTHUMG00000190265.3 +3929 KI270873.1 HAVANA gene 8050 29505 2578.0 + 0 ENSG00000281317.1 processed_transcript BTG3-AS1 2 OTTHUMG00000190266.1 +3930 KI270873.1 HAVANA gene 55582 56690 516.0 - 0 ENSG00000280972.1 lincRNA AP000432.4 2 OTTHUMG00000190267.1 +3931 KI270873.1 HAVANA gene 101714 103761 2048.0 + 0 ENSG00000280882.1 TEC AP000432.3 2 OTTHUMG00000190268.1 +3932 KI270873.1 HAVANA gene 128746 138502 924.0 - 0 ENSG00000280542.1 lincRNA AC208585.1 2 OTTHUMG00000190269.1 +3933 KI270874.1 HAVANA gene 63577 64455 879.0 - 0 ENSG00000280681.1 processed_pseudogene NEK4P1 2 OTTHUMG00000190262.1 +3934 KI270874.1 HAVANA gene 152529 152906 378.0 + 0 ENSG00000280973.1 processed_pseudogene AP000457.2 2 OTTHUMG00000190263.1 +3935 KI270875.1 HAVANA gene 2537 3056 397.0 + 0 ENSG00000281145.1 IG_V_gene IGLV5-45 2 OTTHUMG00000190313.2 +3936 KI270875.1 HAVANA gene 7318 7898 466.0 + 0 ENSG00000274854.2 IG_V_gene IGLV1-44 2 OTTHUMG00000190314.2 +3937 KI270875.1 HAVANA gene 21571 22042 385.0 + 0 ENSG00000278293.2 IG_V_gene IGLV7-43 2 OTTHUMG00000190315.2 +3938 KI270875.1 HAVANA gene 23582 24074 381.0 + 0 ENSG00000281361.1 IG_V_pseudogene IGLVI-42 2 OTTHUMG00000190316.1 +3939 KI270875.1 HAVANA gene 29140 29631 369.0 + 0 ENSG00000281536.1 IG_V_gene AC009286.3 2 OTTHUMG00000190317.2 +3940 KI270875.1 HAVANA gene 34499 34649 151.0 + 0 ENSG00000281074.1 IG_V_pseudogene IGLVVII-41-1 2 OTTHUMG00000190318.1 +3941 KI270875.1 HAVANA gene 39855 40369 406.0 + 0 ENSG00000281565.1 IG_V_pseudogene IGLV1-41 2 OTTHUMG00000190319.1 +3942 KI270875.1 HAVANA gene 45415 45931 407.0 + 0 ENSG00000274575.2 IG_V_gene IGLV1-40 2 OTTHUMG00000190320.2 +3943 KI270875.1 HAVANA gene 55964 56948 985.0 + 0 ENSG00000281502.1 processed_pseudogene ASH2LP1 2 OTTHUMG00000190321.1 +3944 KI270875.1 HAVANA gene 61459 61952 385.0 + 0 ENSG00000280941.1 IG_V_pseudogene IGLVI-38 2 OTTHUMG00000190322.1 +3945 KI270875.1 HAVANA gene 63177 63672 374.0 + 0 ENSG00000281471.1 IG_V_gene IGLV5-37 2 OTTHUMG00000190323.2 +3946 KI270875.1 HAVANA gene 67597 68104 393.0 + 0 ENSG00000273737.3 IG_V_gene IGLV1-36 2 OTTHUMG00000190324.2 +3947 KI270875.1 HAVANA gene 82325 83975 1651.0 + 0 ENSG00000280754.1 processed_pseudogene AC009286.1 2 OTTHUMG00000190325.1 +3948 KI270875.1 HAVANA gene 85841 86291 340.0 + 0 ENSG00000280825.1 IG_V_pseudogene IGLV7-35 2 OTTHUMG00000190326.1 +3949 KI270875.1 HAVANA gene 101299 101626 328.0 + 0 ENSG00000281326.1 unprocessed_pseudogene AC009286.2 2 OTTHUMG00000190327.1 +3950 KI270875.1 HAVANA gene 120078 144811 5723.0 - 0 ENSG00000277421.3 protein_coding ZNF280B 2 OTTHUMG00000190328.1 +3951 KI270875.1 HAVANA gene 149393 155927 2148.0 - 0 ENSG00000275499.2 protein_coding ZNF280A 2 OTTHUMG00000190329.1 +3952 KI270875.1 HAVANA gene 183358 195018 3762.0 - 0 ENSG00000275013.4 protein_coding PRAME 2 OTTHUMG00000190330.2 +3953 KI270875.1 HAVANA gene 195000 202259 3111.0 + 0 ENSG00000281296.1 antisense LL22NC03-63E9.3 2 OTTHUMG00000190331.1 +3954 KI270875.1 HAVANA gene 215499 215953 338.0 + 0 ENSG00000281055.1 IG_V_pseudogene IGLV2-34 2 OTTHUMG00000190332.1 +3955 KI270875.1 HAVANA gene 223812 224345 412.0 + 0 ENSG00000281345.1 IG_V_gene IGLV2-33 2 OTTHUMG00000190333.2 +3956 KI270875.1 HAVANA gene 230185 230713 383.0 + 0 ENSG00000280866.1 IG_V_gene IGLV3-32 2 OTTHUMG00000190334.2 +3957 KI270875.1 HAVANA gene 240102 240822 297.0 + 0 ENSG00000281493.1 IG_V_pseudogene IGLV3-31 2 OTTHUMG00000190335.1 +3958 KI270875.1 HAVANA gene 254229 254820 298.0 + 0 ENSG00000281031.1 IG_V_pseudogene IGLV3-30 2 OTTHUMG00000190336.1 +3959 KI270876.1 HAVANA gene 707 4140 601.0 + 0 ENSG00000280984.1 lincRNA AL049748.2 2 OTTHUMG00000189891.1 +3960 KI270876.1 HAVANA gene 18570 18943 374.0 + 0 ENSG00000280782.1 processed_pseudogene MRPS16P3 2 OTTHUMG00000189892.1 +3961 KI270876.1 HAVANA gene 32639 44250 1438.0 + 0 ENSG00000277390.1 protein_coding APOL5 2 OTTHUMG00000189893.1 +3962 KI270876.1 HAVANA gene 59734 259895 9724.0 - 0 ENSG00000277564.4 protein_coding RBFOX2 2 OTTHUMG00000189894.2 overlapping_locus +3963 KI270877.1 HAVANA gene 21471 40266 1050.0 - 0 ENSG00000274665.3 protein_coding PVALB 2 OTTHUMG00000189887.1 +3964 KI270877.1 HAVANA gene 37113 40523 549.0 + 0 ENSG00000281401.1 antisense Z82185.2 2 OTTHUMG00000189888.1 +3965 KI270877.1 HAVANA gene 68159 94392 1217.0 - 0 ENSG00000281093.1 antisense NCF4-AS1 2 OTTHUMG00000189889.1 +3966 KI270877.1 HAVANA gene 81782 101331 1448.0 + 0 ENSG00000275990.3 protein_coding NCF4 2 OTTHUMG00000189890.2 +3967 KI270878.1 HAVANA gene 5561 33689 1560.0 - 0 ENSG00000280839.2 transcribed_unprocessed_pseudogene CES5AP1 2 OTTHUMG00000189996.1 +3968 KI270878.1 HAVANA gene 38729 39797 629.0 + 0 ENSG00000281149.1 unprocessed_pseudogene AP000344.3 2 OTTHUMG00000189999.1 +3969 KI270878.1 HAVANA gene 36564 48684 3269.0 - 0 ENSG00000281076.2 transcribed_unprocessed_pseudogene ZDHHC8P1 2 OTTHUMG00000189998.1 +3970 KI270878.1 HAVANA gene 79522 81029 1083.0 + 0 ENSG00000280986.1 lincRNA LINC01659 2 OTTHUMG00000190001.1 +3971 KI270878.1 HAVANA gene 92556 106791 795.0 + 0 ENSG00000281374.1 transcribed_processed_pseudogene AP000344.4 2 OTTHUMG00000190002.1 +3972 KI270878.1 HAVANA gene 108044 132939 1578.0 - 0 ENSG00000274657.2 lincRNA LINC01658 2 OTTHUMG00000190003.1 +3973 KI270878.1 HAVANA gene 182694 183802 477.0 - 0 ENSG00000281077.1 lincRNA LINC02557 2 OTTHUMG00000190004.1 +3974 KI270879.1 HAVANA gene 449 2223 1775.0 + 0 ENSG00000273579.3 protein_coding C22orf15 2 OTTHUMG00000190060.1 +3975 KI270879.1 HAVANA gene 2196 4805 1360.0 - 0 ENSG00000273607.3 protein_coding CHCHD10 2 OTTHUMG00000190061.1 +3976 KI270879.1 ENSEMBL gene 18645 20320 747.0 - 0 ENSG00000267954.2 protein_coding AP000349.1 3 +3977 KI270879.1 HAVANA gene 4588 20678 5176.0 + 0 ENSG00000275365.3 protein_coding MMP11 2 OTTHUMG00000190062.1 +3978 KI270879.1 HAVANA gene 23325 70878 2481.0 + 0 ENSG00000275837.3 protein_coding SMARCB1 2 OTTHUMG00000190063.2 +3979 KI270879.1 HAVANA gene 70865 75490 3796.0 - 0 ENSG00000274437.4 protein_coding DERL3 2 OTTHUMG00000190064.1 +3980 KI270879.1 HAVANA gene 92789 93401 613.0 - 0 ENSG00000281354.1 antisense AP000350.13 2 OTTHUMG00000190065.1 +3981 KI270879.1 HAVANA gene 101610 109639 8030.0 - 0 ENSG00000281180.1 antisense AP000350.10 2 OTTHUMG00000190066.1 +3982 KI270879.1 ENSEMBL gene 115855 116152 298.0 - 0 ENSG00000277187.1 misc_RNA RN7SL268P 3 +3983 KI270879.1 HAVANA gene 93065 122671 8506.0 + 0 ENSG00000275744.4 protein_coding SLC2A11 2 OTTHUMG00000190337.1 overlapping_locus +3984 KI270879.1 HAVANA gene 98550 131585 788.0 + 0 ENSG00000281287.1 protein_coding AP000350.12 2 OTTHUMG00000190338.2 overlapping_locus +3985 KI270879.1 HAVANA gene 130366 131589 1109.0 + 0 ENSG00000276701.2 protein_coding MIF 2 OTTHUMG00000190339.1 overlapping_locus +3986 KI270879.1 HAVANA gene 130788 135292 1476.0 - 0 ENSG00000281335.1 antisense MIF-AS1 2 OTTHUMG00000190067.1 +3987 KI270879.1 HAVANA gene 137794 143430 5637.0 - 0 ENSG00000281582.1 lincRNA AP000350.14 2 OTTHUMG00000190068.1 +3988 KI270879.1 HAVANA gene 163262 165936 1763.0 + 0 ENSG00000281900.1 processed_pseudogene AP000350.15 2 OTTHUMG00000190340.1 +3989 KI270879.1 HAVANA gene 176360 179160 532.0 + 0 ENSG00000281065.1 unprocessed_pseudogene AP000350.9 2 OTTHUMG00000190341.1 +3990 KI270879.1 HAVANA gene 186280 190404 289.0 + 0 ENSG00000280601.1 unprocessed_pseudogene AP000350.8 2 OTTHUMG00000190342.1 +3991 KI270879.1 ENSEMBL gene 193780 197568 1115.0 - 0 ENSG00000278695.1 protein_coding GSTT2B 3 +3992 KI270879.1 HAVANA gene 200142 200736 254.0 + 0 ENSG00000281265.1 processed_pseudogene AP000350.11 2 OTTHUMG00000190343.1 +3993 KI270879.1 HAVANA gene 205575 206237 663.0 + 0 ENSG00000281400.1 sense_intronic AP000351.8 2 OTTHUMG00000190345.1 overlapping_locus +3994 KI270879.1 HAVANA gene 203264 208896 1545.0 + 0 ENSG00000275758.2 protein_coding DDTL 2 OTTHUMG00000190344.1 overlapping_locus +3995 KI270879.1 HAVANA gene 213267 213951 350.0 - 0 ENSG00000281722.1 unprocessed_pseudogene AP000351.9 2 OTTHUMG00000190347.1 overlapping_locus +3996 KI270879.1 HAVANA gene 207729 216835 1759.0 - 0 ENSG00000275003.3 protein_coding DDT 2 OTTHUMG00000190346.1 overlapping_locus +3997 KI270879.1 HAVANA gene 216514 220281 1094.0 + 0 ENSG00000277897.2 protein_coding GSTT2 2 OTTHUMG00000190348.1 +3998 KI270879.1 HAVANA gene 223686 227790 315.0 - 0 ENSG00000281276.1 unprocessed_pseudogene AP000351.6 2 OTTHUMG00000190349.1 +3999 KI270879.1 HAVANA gene 234773 241525 2029.0 - 0 ENSG00000281748.3 protein_coding GSTT4 2 OTTHUMG00000190350.3 +4000 KI270879.1 HAVANA gene 244899 246255 366.0 - 0 ENSG00000280929.1 unprocessed_pseudogene AP000351.4 2 OTTHUMG00000190351.1 +4001 KI270879.1 ENSEMBL gene 259292 259749 111.0 - 0 ENSG00000278401.1 protein_coding AP000351.3 3 +4002 KI270879.1 HAVANA gene 260927 265059 335.0 + 0 ENSG00000276636.2 unprocessed_pseudogene AP000351.1 2 OTTHUMG00000190352.1 +4003 KI270879.1 HAVANA gene 267287 267961 311.0 + 0 ENSG00000277507.2 unprocessed_pseudogene AP000351.2 2 OTTHUMG00000190353.1 +4004 KI270879.1 HAVANA gene 270314 278855 5592.0 - 0 ENSG00000277656.3 protein_coding GSTT1 2 OTTHUMG00000190354.2 +4005 KI270879.1 HAVANA gene 288827 295977 726.0 - 0 ENSG00000281310.2 protein_coding AP000351.7 2 OTTHUMG00000190355.2 +4006 KI270879.1 HAVANA gene 296859 298919 434.0 - 0 ENSG00000280940.1 unprocessed_pseudogene AP000351.5 2 OTTHUMG00000190356.1 +4007 KI270879.1 HAVANA gene 301817 302353 489.0 + 0 ENSG00000281670.1 processed_transcript CABIN1 2 OTTHUMG00000190357.1 overlapping_locus +4008 KI270880.1 HAVANA gene 1653 2374 428.0 + 0 ENSG00000280741.1 antisense LINC00685 2 OTTHUMG00000189959.1 +4009 KI270880.1 HAVANA gene 17159 70308 9015.0 - 0 ENSG00000276438.3 protein_coding PPP2R3B 2 OTTHUMG00000189942.2 +4010 KI270880.1 ENSEMBL gene 71453 71742 290.0 - 0 ENSG00000276895.1 misc_RNA RF00017 3 +4011 KI270880.1 HAVANA gene 70333 88932 484.0 + 0 ENSG00000280593.1 antisense AL732314.3 2 OTTHUMG00000189994.1 +4012 KI270880.1 HAVANA gene 102510 105333 515.0 + 0 ENSG00000280532.1 lincRNA AL732314.2 2 OTTHUMG00000189995.1 +4013 KI270880.1 HAVANA gene 207128 207455 328.0 - 0 ENSG00000280935.1 processed_pseudogene FABP5P13 2 OTTHUMG00000189970.1 +4014 KI270880.1 HAVANA gene 228589 228705 117.0 - 0 ENSG00000280844.1 processed_pseudogene KRT18P53 2 OTTHUMG00000189971.1 +4015 KI270881.1 HAVANA gene 65314 82327 2654.0 - 0 ENSG00000277800.3 protein_coding TBX22 2 OTTHUMG00000190014.3 +4016 KI270882.1 ENSEMBL gene 6467 6573 107.0 + 0 ENSG00000274623.1 snRNA RF00026 3 +4017 KI270882.1 HAVANA gene 8297 25091 1885.0 - 0 ENSG00000278403.4 protein_coding KIR3DL2 2 OTTHUMG00000188785.1 +4018 KI270882.1 HAVANA gene 26965 41413 1535.0 - 0 ENSG00000275306.1 protein_coding KIR2DS1 2 OTTHUMG00000188786.1 +4019 KI270882.1 HAVANA gene 43805 58241 1193.0 - 0 ENSG00000278086.1 protein_coding GU182347.1 2 OTTHUMG00000188787.1 +4020 KI270882.1 HAVANA gene 60105 69601 1632.0 - 0 ENSG00000276177.1 protein_coding KIR2DL5A 2 OTTHUMG00000188788.1 +4021 KI270882.1 HAVANA gene 71689 86302 1795.0 - 0 ENSG00000275037.5 protein_coding KIR3DS1 2 OTTHUMG00000188789.1 +4022 KI270882.1 HAVANA gene 88224 109700 1895.0 - 0 ENSG00000277540.4 protein_coding KIR2DL4 2 OTTHUMG00000188790.1 overlapping_locus +4023 KI270882.1 HAVANA gene 104465 116281 1223.0 - 0 ENSG00000278691.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188791.1 overlapping_locus +4024 KI270882.1 HAVANA gene 118609 132937 1484.0 - 0 ENSG00000275522.4 protein_coding KIR2DL1 2 OTTHUMG00000188792.1 +4025 KI270882.1 HAVANA gene 134875 147768 1592.0 - 0 ENSG00000276279.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188793.1 +4026 KI270882.1 HAVANA gene 150122 164557 1193.0 - 0 ENSG00000277163.1 protein_coding KIR2DS3 2 OTTHUMG00000188794.1 +4027 KI270882.1 HAVANA gene 166421 175937 1632.0 - 0 ENSG00000278481.1 protein_coding KIR2DL5B 2 OTTHUMG00000188795.1 +4028 KI270882.1 HAVANA gene 177968 192496 1572.0 - 0 ENSG00000276731.1 protein_coding KIR2DL2 2 OTTHUMG00000188796.1 +4029 KI270882.1 HAVANA gene 194387 208682 1557.0 - 0 ENSG00000275737.1 protein_coding KIR2DS2 2 OTTHUMG00000188797.1 +4030 KI270882.1 HAVANA gene 210687 222705 1694.0 - 0 ENSG00000274394.1 protein_coding KIR3DL3 2 OTTHUMG00000188798.1 +4031 KI270882.1 HAVANA gene 233731 239268 2127.0 - 0 ENSG00000273666.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188980.1 +4032 KI270882.1 HAVANA gene 242949 243232 284.0 - 0 ENSG00000278432.1 unprocessed_pseudogene AC245128.16 2 OTTHUMG00000188981.1 +4033 KI270882.1 HAVANA gene 246279 246591 183.0 - 0 ENSG00000277894.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188982.1 +4034 KI270883.1 HAVANA gene 1576 18370 1885.0 - 0 ENSG00000275083.4 protein_coding KIR3DL2 2 OTTHUMG00000188850.1 +4035 KI270883.1 HAVANA gene 20526 36050 1240.0 - 0 ENSG00000275351.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000188851.1 +4036 KI270883.1 HAVANA gene 38030 52335 1865.0 - 0 ENSG00000275486.5 protein_coding KIR3DL1 2 OTTHUMG00000188852.1 +4037 KI270883.1 HAVANA gene 54292 65480 2169.0 - 0 ENSG00000278606.4 protein_coding KIR2DL4 2 OTTHUMG00000188853.1 +4038 KI270883.1 HAVANA gene 70554 82484 1257.0 - 0 ENSG00000275255.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188854.1 overlapping_locus +4039 KI270883.1 HAVANA gene 84517 99020 1666.0 - 0 ENSG00000277833.4 protein_coding KIR2DL1 2 OTTHUMG00000188855.1 +4040 KI270883.1 HAVANA gene 100959 113853 1595.0 - 0 ENSG00000274476.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188856.1 +4041 KI270883.1 HAVANA gene 115787 130311 1596.0 - 0 ENSG00000274402.1 protein_coding KIR2DL3 2 OTTHUMG00000188857.1 +4042 KI270883.1 HAVANA gene 132691 144329 1314.0 - 0 ENSG00000276084.1 protein_coding KIR3DL3 2 OTTHUMG00000188858.1 +4043 KI270883.1 HAVANA gene 155323 160860 2127.0 - 0 ENSG00000273528.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188983.1 +4044 KI270883.1 HAVANA gene 164541 164824 284.0 - 0 ENSG00000277456.1 unprocessed_pseudogene AC245128.13 2 OTTHUMG00000188984.1 +4045 KI270883.1 HAVANA gene 167871 168183 183.0 - 0 ENSG00000273670.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188985.1 +4046 KI270884.1 ENSEMBL gene 195 301 107.0 + 0 ENSG00000274771.1 snRNA RF00026 3 +4047 KI270884.1 HAVANA gene 2033 18762 1874.0 - 0 ENSG00000278656.4 protein_coding KIR3DL2 2 OTTHUMG00000188958.1 +4048 KI270884.1 HAVANA gene 21262 36251 900.0 - 0 ENSG00000276209.4 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000188959.2 +4049 KI270884.1 HAVANA gene 38231 52539 1865.0 - 0 ENSG00000274146.5 protein_coding KIR3DL1 2 OTTHUMG00000188960.1 +4050 KI270884.1 HAVANA gene 54497 65567 1809.0 - 0 ENSG00000277076.4 protein_coding KIR2DL4 2 OTTHUMG00000188961.1 +4051 KI270884.1 HAVANA gene 70734 84147 1305.0 - 0 ENSG00000275887.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188962.1 +4052 KI270884.1 HAVANA gene 86168 100767 1645.0 - 0 ENSG00000275546.5 protein_coding KIR2DL2 2 OTTHUMG00000188963.1 +4053 KI270884.1 HAVANA gene 102709 116870 1423.0 - 0 ENSG00000276139.4 protein_coding KIR2DS2 2 OTTHUMG00000188964.1 +4054 KI270884.1 HAVANA gene 118883 130976 1726.0 - 0 ENSG00000278490.1 protein_coding KIR3DL3 2 OTTHUMG00000188965.1 +4055 KI270884.1 HAVANA gene 142085 147507 2014.0 - 0 ENSG00000278288.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188966.1 +4056 KI270884.1 HAVANA gene 151195 151478 284.0 - 0 ENSG00000278360.1 unprocessed_pseudogene AC245128.15 2 OTTHUMG00000188986.1 +4057 KI270884.1 HAVANA gene 154525 154837 183.0 - 0 ENSG00000274545.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188987.1 +4058 KI270885.1 ENSEMBL gene 321 427 107.0 + 0 ENSG00000277642.1 snRNA RF00026 3 +4059 KI270885.1 HAVANA gene 2151 18909 1885.0 - 0 ENSG00000278361.4 protein_coding KIR3DL2 2 OTTHUMG00000188919.1 +4060 KI270885.1 HAVANA gene 20782 36697 1630.0 - 0 ENSG00000274957.1 protein_coding KIR2DS4 2 OTTHUMG00000188920.1 +4061 KI270885.1 HAVANA gene 38596 52938 1900.0 - 0 ENSG00000277175.5 protein_coding KIR3DL1 2 OTTHUMG00000188921.1 +4062 KI270885.1 HAVANA gene 54860 66050 2169.0 - 0 ENSG00000278430.4 protein_coding KIR2DL4 2 OTTHUMG00000188922.1 +4063 KI270885.1 HAVANA gene 71123 83053 1257.0 - 0 ENSG00000275593.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188923.1 overlapping_locus +4064 KI270885.1 HAVANA gene 85086 99589 1666.0 - 0 ENSG00000278821.4 protein_coding KIR2DL1 2 OTTHUMG00000188924.1 +4065 KI270885.1 HAVANA gene 101940 114385 1146.0 - 0 ENSG00000278614.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188925.1 +4066 KI270885.1 HAVANA gene 116660 130943 1344.0 - 0 ENSG00000275623.5 protein_coding KIR2DL3 2 OTTHUMG00000188926.1 +4067 KI270885.1 HAVANA gene 133273 144952 1314.0 - 0 ENSG00000274763.1 protein_coding KIR3DL3 2 OTTHUMG00000188927.1 +4068 KI270885.1 HAVANA gene 155951 161488 2127.0 - 0 ENSG00000273883.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188988.1 +4069 KI270885.1 HAVANA gene 165169 165452 284.0 - 0 ENSG00000273918.1 unprocessed_pseudogene AC245128.4 2 OTTHUMG00000188989.1 +4070 KI270885.1 HAVANA gene 168499 168811 183.0 - 0 ENSG00000276307.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188990.1 +4071 KI270886.1 HAVANA gene 11028 25442 859.0 - 0 ENSG00000276254.1 unprocessed_pseudogene KIR2DS4 2 OTTHUMG00000188736.1 +4072 KI270886.1 HAVANA gene 27422 41730 1865.0 - 0 ENSG00000274920.5 protein_coding KIR3DL1 2 OTTHUMG00000188737.1 +4073 KI270886.1 HAVANA gene 43688 54583 1567.0 - 0 ENSG00000275848.1 protein_coding KIR2DL4 2 OTTHUMG00000188738.1 +4074 KI270886.1 HAVANA gene 67890 71783 921.0 - 0 ENSG00000275422.1 unprocessed_pseudogene GU182351.1 2 OTTHUMG00000188941.1 +4075 KI270886.1 HAVANA gene 73882 88381 1576.0 - 0 ENSG00000278207.1 protein_coding KIR2DL1 2 OTTHUMG00000188739.1 +4076 KI270886.1 HAVANA gene 90847 103162 1014.0 - 0 ENSG00000277185.1 unprocessed_pseudogene GU182351.3 2 OTTHUMG00000188740.1 +4077 KI270886.1 HAVANA gene 105808 120041 991.0 - 0 ENSG00000277657.1 protein_coding KIR2DS3 2 OTTHUMG00000188741.1 +4078 KI270886.1 HAVANA gene 121973 131453 1596.0 - 0 ENSG00000275436.5 protein_coding GU182351.2 2 OTTHUMG00000188742.1 +4079 KI270886.1 HAVANA gene 133429 147923 1572.0 - 0 ENSG00000275914.5 protein_coding KIR2DL2 2 OTTHUMG00000188743.1 +4080 KI270886.1 HAVANA gene 149814 164109 1557.0 - 0 ENSG00000274438.1 protein_coding KIR2DS2 2 OTTHUMG00000188744.1 +4081 KI270886.1 HAVANA gene 166114 178131 1694.0 - 0 ENSG00000275513.1 protein_coding KIR3DL3 2 OTTHUMG00000188745.1 +4082 KI270887.1 ENSEMBL gene 12142 12248 107.0 + 0 ENSG00000278230.1 snRNA RF00026 3 +4083 KI270887.1 HAVANA gene 13972 30766 1885.0 - 0 ENSG00000277982.4 protein_coding KIR3DL2 2 OTTHUMG00000188814.1 +4084 KI270887.1 HAVANA gene 32636 47179 1630.0 - 0 ENSG00000278304.1 protein_coding KIR2DS1 2 OTTHUMG00000188815.1 +4085 KI270887.1 HAVANA gene 49480 63939 1216.0 - 0 ENSG00000275599.1 protein_coding GU182352.2 2 OTTHUMG00000188816.1 +4086 KI270887.1 HAVANA gene 65780 75331 1687.0 - 0 ENSG00000276686.1 protein_coding KIR2DL5A 2 OTTHUMG00000188817.1 +4087 KI270887.1 HAVANA gene 77364 91978 1795.0 - 0 ENSG00000274283.5 protein_coding KIR3DS1 2 OTTHUMG00000188818.1 +4088 KI270887.1 HAVANA gene 93900 104976 1742.0 - 0 ENSG00000278201.4 protein_coding KIR2DL4 2 OTTHUMG00000188819.1 +4089 KI270887.1 HAVANA gene 110454 121960 908.0 - 0 ENSG00000277729.1 unprocessed_pseudogene GU182352.3 2 OTTHUMG00000188820.1 +4090 KI270887.1 HAVANA gene 124099 138614 1600.0 - 0 ENSG00000274692.1 protein_coding KIR2DL1 2 OTTHUMG00000188821.1 +4091 KI270887.1 HAVANA gene 141057 153402 1046.0 - 0 ENSG00000275247.1 unprocessed_pseudogene GU182352.1 2 OTTHUMG00000188822.1 +4092 KI270887.1 HAVANA gene 155373 169871 1572.0 - 0 ENSG00000275008.1 protein_coding KIR2DL3 2 OTTHUMG00000188823.1 +4093 KI270887.1 HAVANA gene 171866 183926 1691.0 - 0 ENSG00000275062.1 protein_coding KIR3DL3 2 OTTHUMG00000188824.1 +4094 KI270887.1 HAVANA gene 194952 199966 2128.0 - 0 ENSG00000277271.4 transcribed_unprocessed_pseudogene LILRP2 2 OTTHUMG00000188825.1 +4095 KI270888.1 HAVANA gene 1715 18474 1885.0 - 0 ENSG00000275626.4 protein_coding KIR3DL2 2 OTTHUMG00000188859.1 +4096 KI270888.1 HAVANA gene 20344 34826 1633.0 - 0 ENSG00000275731.1 protein_coding KIR2DS4 2 OTTHUMG00000188860.2 +4097 KI270888.1 HAVANA gene 36725 51067 1900.0 - 0 ENSG00000278427.5 protein_coding KIR3DL1 2 OTTHUMG00000188861.1 +4098 KI270888.1 HAVANA gene 52989 64087 1730.0 - 0 ENSG00000278271.1 protein_coding KIR2DL4 2 OTTHUMG00000188845.2 +4099 KI270888.1 HAVANA gene 69252 82656 1294.0 - 0 ENSG00000274971.1 protein_coding GU182353.1 2 OTTHUMG00000188846.1 +4100 KI270888.1 HAVANA gene 84688 99229 1587.0 - 0 ENSG00000277251.5 protein_coding KIR2DL2 2 OTTHUMG00000188847.1 +4101 KI270888.1 HAVANA gene 101207 115411 1465.0 - 0 ENSG00000275253.1 protein_coding KIR2DS2 2 OTTHUMG00000188848.1 +4102 KI270888.1 HAVANA gene 117283 129431 1815.0 - 0 ENSG00000274254.1 protein_coding KIR3DL3 2 OTTHUMG00000188862.2 +4103 KI270888.1 HAVANA gene 140574 145996 2014.0 - 0 ENSG00000276512.4 transcribed_unprocessed_pseudogene LILRP2 2 OTTHUMG00000188849.1 +4104 KI270889.1 ENSEMBL gene 12 118 107.0 + 0 ENSG00000278411.1 snRNA RF00026 3 +4105 KI270889.1 HAVANA gene 1842 18600 1885.0 - 0 ENSG00000276357.4 protein_coding KIR3DL2 2 OTTHUMG00000188908.1 +4106 KI270889.1 HAVANA gene 20473 36388 1630.0 - 0 ENSG00000276154.1 protein_coding KIR2DS4 2 OTTHUMG00000188900.1 +4107 KI270889.1 HAVANA gene 38286 52593 1865.0 - 0 ENSG00000278856.5 protein_coding KIR3DL1 2 OTTHUMG00000188901.1 +4108 KI270889.1 HAVANA gene 54552 65459 1539.0 - 0 ENSG00000275456.1 protein_coding KIR2DL4 2 OTTHUMG00000188902.2 +4109 KI270889.1 HAVANA gene 71123 82638 916.0 - 0 ENSG00000275245.1 unprocessed_pseudogene GU182354.2 2 OTTHUMG00000188903.1 +4110 KI270889.1 HAVANA gene 84773 99274 1586.0 - 0 ENSG00000278248.1 protein_coding KIR2DL1 2 OTTHUMG00000188904.1 +4111 KI270889.1 HAVANA gene 101728 114076 1049.0 - 0 ENSG00000275225.1 unprocessed_pseudogene GU182354.1 2 OTTHUMG00000188905.1 +4112 KI270889.1 HAVANA gene 116047 130563 1590.0 - 0 ENSG00000276459.5 protein_coding KIR2DL3 2 OTTHUMG00000188906.1 +4113 KI270889.1 HAVANA gene 132541 144596 1691.0 - 0 ENSG00000274639.1 protein_coding KIR3DL3 2 OTTHUMG00000188907.1 +4114 KI270890.1 ENSEMBL gene 1 107 107.0 + 0 ENSG00000275782.1 snRNA RF00026 3 +4115 KI270890.1 HAVANA gene 1831 18625 1885.0 - 0 ENSG00000275511.4 protein_coding KIR3DL2 2 OTTHUMG00000188717.1 +4116 KI270890.1 HAVANA gene 20753 34989 1323.0 - 0 ENSG00000273603.1 protein_coding KIR2DS1 2 OTTHUMG00000188718.1 +4117 KI270890.1 HAVANA gene 36929 51949 1601.0 - 0 ENSG00000275047.1 protein_coding GU182355.1 2 OTTHUMG00000188719.1 +4118 KI270890.1 HAVANA gene 53906 63370 1596.0 - 0 ENSG00000275596.1 protein_coding KIR2DL5A 2 OTTHUMG00000188720.1 +4119 KI270890.1 HAVANA gene 65403 79990 1769.0 - 0 ENSG00000275608.5 protein_coding KIR3DS1 2 OTTHUMG00000188721.1 +4120 KI270890.1 HAVANA gene 81938 93014 1742.0 - 0 ENSG00000273498.4 protein_coding KIR2DL4 2 OTTHUMG00000188722.1 +4121 KI270890.1 HAVANA gene 98179 111582 1294.0 - 0 ENSG00000278277.1 protein_coding GU182355.2 2 OTTHUMG00000188723.1 +4122 KI270890.1 HAVANA gene 113614 128147 1587.0 - 0 ENSG00000278692.1 protein_coding GU182355.3 2 OTTHUMG00000188724.1 +4123 KI270890.1 HAVANA gene 130021 144329 1569.0 - 0 ENSG00000275735.1 protein_coding KIR2DS2 2 OTTHUMG00000188725.1 +4124 KI270890.1 HAVANA gene 146205 158395 1823.0 - 0 ENSG00000276086.1 protein_coding KIR3DL3 2 OTTHUMG00000188726.1 +4125 KI270890.1 HAVANA gene 169423 174960 2127.0 - 0 ENSG00000273922.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188880.1 +4126 KI270890.1 HAVANA gene 178641 178924 284.0 - 0 ENSG00000276994.1 unprocessed_pseudogene AC245128.12 2 OTTHUMG00000188881.1 +4127 KI270890.1 HAVANA gene 181971 182283 183.0 - 0 ENSG00000273546.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188882.1 +4128 KI270891.1 ENSEMBL gene 12 118 107.0 + 0 ENSG00000277153.1 snRNA RNU6-222P 3 +4129 KI270891.1 HAVANA gene 1842 18614 1885.0 - 0 ENSG00000275262.4 protein_coding KIR3DL2 2 OTTHUMG00000188727.1 +4130 KI270891.1 HAVANA gene 20773 36403 1344.0 - 0 ENSG00000274406.1 protein_coding KIR2DS4 2 OTTHUMG00000188728.1 +4131 KI270891.1 HAVANA gene 38301 52606 1863.0 - 0 ENSG00000273518.5 protein_coding KIR3DL1 2 OTTHUMG00000188729.1 +4132 KI270891.1 HAVANA gene 54778 65492 1346.0 - 0 ENSG00000278074.1 protein_coding KIR2DL4 2 OTTHUMG00000188730.1 +4133 KI270891.1 HAVANA gene 78797 82797 701.0 - 0 ENSG00000274163.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188731.1 +4134 KI270891.1 HAVANA gene 85097 99353 1341.0 - 0 ENSG00000275276.1 protein_coding KIR2DL1 2 OTTHUMG00000188732.1 +4135 KI270891.1 HAVANA gene 102534 114129 856.0 - 0 ENSG00000274942.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188733.1 +4136 KI270891.1 HAVANA gene 116064 130587 1596.0 - 0 ENSG00000277554.5 protein_coding KIR2DL3 2 OTTHUMG00000188734.1 +4137 KI270891.1 HAVANA gene 132966 144604 1314.0 - 0 ENSG00000276328.1 protein_coding KIR3DL3 2 OTTHUMG00000188735.1 +4138 KI270891.1 HAVANA gene 155604 161141 2127.0 - 0 ENSG00000274842.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188883.1 +4139 KI270891.1 HAVANA gene 164822 165105 284.0 - 0 ENSG00000274009.1 unprocessed_pseudogene AC245128.5 2 OTTHUMG00000188884.1 +4140 KI270891.1 HAVANA gene 168152 168464 183.0 - 0 ENSG00000277921.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188885.1 +4141 KI270892.1 HAVANA gene 9555 10601 1047.0 + 0 ENSG00000275617.1 protein_coding OR2T4 2 OTTHUMG00000190022.2 +4142 KI270892.1 HAVANA gene 35923 36849 927.0 + 0 ENSG00000278659.1 protein_coding OR2T6 2 OTTHUMG00000190023.2 +4143 KI270892.1 HAVANA gene 56201 57310 1110.0 + 0 ENSG00000273508.1 protein_coding OR2T1 2 OTTHUMG00000190024.2 +4144 KI270892.1 HAVANA gene 91625 92551 927.0 + 0 ENSG00000281489.1 protein_coding OR2T7 2 OTTHUMG00000190025.2 +4145 KI270892.1 HAVANA gene 103216 104190 975.0 + 0 ENSG00000275754.2 protein_coding OR2T2 2 OTTHUMG00000190026.2 +4146 KI270892.1 HAVANA gene 123769 124725 957.0 + 0 ENSG00000277113.2 protein_coding OR2T3 2 OTTHUMG00000190027.2 +4147 KI270892.1 HAVANA gene 134663 135902 967.0 - 0 ENSG00000281658.1 lincRNA AC138089.2 2 OTTHUMG00000190028.1 +4148 KI270892.1 HAVANA gene 139007 139954 948.0 + 0 ENSG00000275102.2 protein_coding OR2T5 2 OTTHUMG00000190029.2 +4149 KI270892.1 HAVANA gene 148726 149046 321.0 + 0 ENSG00000280815.1 unprocessed_pseudogene OR2AS2P 2 OTTHUMG00000190030.1 +4150 KI270893.1 HAVANA gene 9378 15971 2607.0 + 0 ENSG00000281213.1 lincRNA LINC01238 2 OTTHUMG00000189674.1 +4151 KI270893.1 HAVANA gene 42386 44708 2323.0 + 0 ENSG00000281099.1 lincRNA AC244167.1 2 OTTHUMG00000189675.1 +4152 KI270893.1 HAVANA gene 68894 69865 543.0 - 0 ENSG00000281268.1 lincRNA AC244167.2 2 OTTHUMG00000189676.1 +4153 KI270893.1 HAVANA gene 91394 127848 572.0 - 0 ENSG00000280943.1 lincRNA LINC01880 2 OTTHUMG00000189677.1 +4154 KI270893.1 HAVANA gene 138604 159942 287.0 + 0 ENSG00000281519.1 unprocessed_pseudogene LINC01881 2 OTTHUMG00000189678.1 +4155 KI270894.1 HAVANA gene 2391 3048 534.0 + 0 ENSG00000281078.1 IG_V_gene IGKV1D-8 2 OTTHUMG00000189823.2 +4156 KI270894.1 HAVANA gene 27408 27884 353.0 + 0 ENSG00000281759.1 IG_V_gene AC145029.2 2 OTTHUMG00000189824.2 +4157 KI270894.1 HAVANA gene 41173 41731 384.0 + 0 ENSG00000275777.3 IG_V_gene IGKV3D-7 2 OTTHUMG00000189825.2 +4158 KI270894.1 HAVANA gene 122108 122211 104.0 + 0 ENSG00000280768.1 unprocessed_pseudogene AC145029.1 2 OTTHUMG00000189810.1 +4159 KI270894.1 HAVANA gene 128236 128706 347.0 - 0 ENSG00000280572.1 IG_V_pseudogene IGKV1OR2-118 2 OTTHUMG00000189811.1 +4160 KI270894.1 HAVANA gene 171456 171679 224.0 - 0 ENSG00000280569.1 processed_pseudogene AC233263.4 2 OTTHUMG00000189812.1 +4161 KI270894.1 HAVANA gene 177384 179346 1963.0 + 0 ENSG00000280491.1 lincRNA AC233263.3 2 OTTHUMG00000189813.1 +4162 KI270895.1 HAVANA gene 3239 47971 20096.0 + 0 ENSG00000273822.5 protein_coding MUC4 2 OTTHUMG00000189768.1 +4163 KI270895.1 HAVANA gene 53608 73319 3736.0 - 0 ENSG00000274843.3 protein_coding MUC20 2 OTTHUMG00000189769.1 overlapping_locus +4164 KI270895.1 HAVANA gene 106496 134304 2001.0 - 0 ENSG00000280909.1 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000189775.1 overlapping_locus +4165 KI270895.1 HAVANA gene 16220 134338 17596.0 - 0 ENSG00000280993.2 lincRNA MUC20-OT1 2 OTTHUMG00000189770.3 overlapping_locus +4166 KI270895.1 HAVANA gene 134473 136835 1684.0 + 0 ENSG00000280629.1 lincRNA AC233280.5 2 OTTHUMG00000189772.1 +4167 KI270895.1 HAVANA gene 140928 142254 1070.0 + 0 ENSG00000281798.1 processed_pseudogene AC233280.16 2 OTTHUMG00000189773.1 +4168 KI270896.1 HAVANA gene 37434 38043 610.0 - 0 ENSG00000280590.1 lincRNA AF250324.2 2 OTTHUMG00000190104.1 +4169 KI270896.1 ENSEMBL gene 43092 43267 176.0 - 0 ENSG00000277908.1 snRNA RNU1-51P 3 +4170 KI270896.1 HAVANA gene 219023 222371 592.0 + 0 ENSG00000281015.1 lincRNA LINC01596 2 OTTHUMG00000190106.1 +4171 KI270896.1 HAVANA gene 113889 277801 2304.0 - 0 ENSG00000281543.2 lincRNA FRG1-DT 2 OTTHUMG00000190105.1 +4172 KI270896.1 HAVANA gene 278318 300735 1707.0 + 0 ENSG00000275145.3 protein_coding FRG1 2 OTTHUMG00000190107.2 +4173 KI270896.1 HAVANA gene 311130 311378 249.0 - 0 ENSG00000280930.1 processed_pseudogene AC226374.1 2 OTTHUMG00000190108.1 +4174 KI270896.1 HAVANA gene 317433 318138 706.0 + 0 ENSG00000280732.1 processed_pseudogene AF146191.2 2 OTTHUMG00000190109.1 +4175 KI270896.1 HAVANA gene 320054 322402 1305.0 - 0 ENSG00000173876.10 unprocessed_pseudogene TUBB7P 1 OTTHUMG00000190110.1 +4176 KI270896.1 ENSEMBL gene 352669 352786 118.0 + 0 ENSG00000277584.1 rRNA RF00001 3 +4177 KI270896.1 ENSEMBL gene 355227 355345 119.0 + 0 ENSG00000275999.1 rRNA RF00001 3 +4178 KI270896.1 HAVANA gene 358938 360196 1259.0 - 0 ENSG00000276616.2 unprocessed_pseudogene DUX4L9 2 OTTHUMG00000190111.1 +4179 KI270896.1 HAVANA gene 361882 364788 2103.0 - 0 ENSG00000274972.3 protein_coding FRG2 2 OTTHUMG00000190112.1 +4180 KI270896.1 HAVANA gene 375447 375930 484.0 - 0 ENSG00000281409.1 processed_pseudogene AF146191.3 2 OTTHUMG00000190113.1 +4181 KI270897.1 HAVANA gene 114943 120867 589.0 + 0 ENSG00000278019.2 unprocessed_pseudogene AC245690.1 2 OTTHUMG00000190050.1 +4182 KI270897.1 HAVANA gene 135378 145871 635.0 + 0 ENSG00000281703.1 unprocessed_pseudogene AC245690.2 2 OTTHUMG00000190052.1 +4183 KI270897.1 HAVANA gene 210204 210505 302.0 - 0 ENSG00000280638.1 unprocessed_pseudogene CDH12P2 2 OTTHUMG00000190069.1 +4184 KI270897.1 HAVANA gene 250579 268460 3025.0 + 0 ENSG00000277429.4 protein_coding SERF1B 2 OTTHUMG00000190015.2 +4185 KI270897.1 HAVANA gene 281140 282752 1613.0 - 0 ENSG00000285263.1 antisense AC244635.3 2 OTTHUMG00000192403.1 +4186 KI270897.1 HAVANA gene 274951 303848 2969.0 + 0 ENSG00000273772.4 protein_coding SMN2 2 OTTHUMG00000190016.1 +4187 KI270897.1 HAVANA gene 319987 353784 3544.0 - 0 ENSG00000281380.1 unprocessed_pseudogene AC244635.2 2 OTTHUMG00000190017.1 +4188 KI270897.1 HAVANA gene 358030 358324 295.0 + 0 ENSG00000280983.1 unprocessed_pseudogene AC244635.1 2 OTTHUMG00000190070.1 +4189 KI270897.1 HAVANA gene 449073 466963 3055.0 + 0 ENSG00000275581.4 protein_coding SERF1A 2 OTTHUMG00000190031.2 +4190 KI270897.1 HAVANA gene 479654 481266 1613.0 - 0 ENSG00000285240.1 antisense AC244260.2 2 OTTHUMG00000192405.1 +4191 KI270897.1 HAVANA gene 473491 501447 1819.0 + 0 ENSG00000275349.4 protein_coding SMN1 2 OTTHUMG00000190018.1 +4192 KI270897.1 HAVANA gene 516878 573494 8737.0 - 0 ENSG00000276068.4 protein_coding NAIP 2 OTTHUMG00000190019.2 +4193 KI270897.1 HAVANA gene 581052 616068 8680.0 - 0 ENSG00000276910.4 protein_coding GTF2H2 2 OTTHUMG00000190053.2 +4194 KI270897.1 HAVANA gene 630402 654425 2807.0 - 0 ENSG00000280518.1 unprocessed_pseudogene AC244260.1 2 OTTHUMG00000190054.1 overlapping_locus +4195 KI270897.1 HAVANA gene 723287 733767 669.0 - 0 ENSG00000281425.1 transcribed_unprocessed_pseudogene AC243922.2 2 OTTHUMG00000190072.1 overlapping_locus +4196 KI270897.1 HAVANA gene 748318 754197 542.0 - 0 ENSG00000278562.3 transcribed_unprocessed_pseudogene AC243922.1 2 OTTHUMG00000190074.1 overlapping_locus +4197 KI270897.1 HAVANA gene 652965 760797 5764.0 - 0 ENSG00000281650.1 processed_transcript AC243922.3 2 OTTHUMG00000190071.1 overlapping_locus +4198 KI270897.1 HAVANA gene 902654 904876 501.0 - 0 ENSG00000281210.1 lincRNA AC245931.2 2 OTTHUMG00000190077.1 overlapping_locus +4199 KI270897.1 HAVANA gene 905764 915972 2853.0 + 0 ENSG00000280840.2 transcribed_unprocessed_pseudogene PMCHL2 2 OTTHUMG00000190078.1 +4200 KI270897.1 HAVANA gene 881835 976339 2766.0 - 0 ENSG00000281321.1 lincRNA LINC02197 2 OTTHUMG00000190076.1 overlapping_locus +4201 KI270897.1 HAVANA gene 975613 976566 567.0 + 0 ENSG00000280619.1 lincRNA AC245931.1 2 OTTHUMG00000190079.1 +4202 KI270897.1 HAVANA gene 985599 1097795 12436.0 + 0 ENSG00000274803.4 protein_coding BDP1 2 OTTHUMG00000190080.1 +4203 KI270897.1 HAVANA gene 1117263 1134443 1259.0 + 0 ENSG00000281742.2 protein_coding MCCC2 2 OTTHUMG00000190081.2 +4204 KI270898.1 HAVANA gene 5389 5730 342.0 - 0 ENSG00000280559.1 antisense AC106795.6 2 OTTHUMG00000190175.1 +4205 KI270898.1 HAVANA gene 10058 85268 3506.0 + 0 ENSG00000278666.3 transcribed_unprocessed_pseudogene AC106795.4 2 OTTHUMG00000190176.1 overlapping_locus +4206 KI270898.1 HAVANA gene 84871 98496 1421.0 + 0 ENSG00000281644.2 antisense AC106795.9 2 OTTHUMG00000190179.1 overlapping_locus +4207 KI270898.1 HAVANA gene 101540 101993 454.0 + 0 ENSG00000280971.1 lincRNA AC236592.1 2 OTTHUMG00000190180.1 overlapping_locus +4208 KI270898.1 HAVANA gene 105849 106815 967.0 + 0 ENSG00000281351.1 processed_pseudogene SUDS3P1 2 OTTHUMG00000190181.1 overlapping_locus +4209 KI270898.1 HAVANA gene 74158 117870 547.0 + 0 ENSG00000280647.1 lincRNA AC106795.7 2 OTTHUMG00000190178.1 overlapping_locus +4210 KI270898.1 HAVANA gene 127081 130957 1333.0 - 0 ENSG00000274382.2 protein_coding PROP1 2 OTTHUMG00000190182.1 +4211 KI270899.1 HAVANA gene 9790 27822 1310.0 - 0 ENSG00000281951.1 processed_transcript AC093627.11 2 OTTHUMG00000190444.1 +4212 KI270899.1 HAVANA gene 29354 29799 446.0 + 0 ENSG00000282333.1 processed_pseudogene AC093627.15 2 OTTHUMG00000190445.1 +4213 KI270899.1 HAVANA gene 69359 72739 605.0 + 0 ENSG00000282557.1 lincRNA AC093627.17 2 OTTHUMG00000190447.1 +4214 KI270899.1 HAVANA gene 63293 88004 877.0 - 0 ENSG00000282645.1 lincRNA AC093627.19 2 OTTHUMG00000190446.1 +4215 KI270899.1 HAVANA gene 128174 141787 1766.0 - 0 ENSG00000282662.1 lincRNA AC093627.20 2 OTTHUMG00000190448.1 +4216 KI270899.1 HAVANA gene 141918 147786 5149.0 + 0 ENSG00000282461.1 lincRNA AC093627.16 2 OTTHUMG00000190449.1 +4217 KI270899.1 HAVANA gene 154086 157293 3208.0 - 0 ENSG00000282781.1 lincRNA AC093627.21 2 OTTHUMG00000190450.1 +4218 KI270899.1 HAVANA gene 167241 168334 568.0 + 0 ENSG00000282309.1 lincRNA AC093627.14 2 OTTHUMG00000190451.1 +4219 KI270899.1 HAVANA gene 175256 186501 574.0 - 0 ENSG00000282575.1 antisense AC093627.18 2 OTTHUMG00000190452.1 +4220 KI270899.1 HAVANA gene 185290 189896 1547.0 + 0 ENSG00000282147.1 protein_coding FAM20C 2 OTTHUMG00000190453.2 +4221 KI270900.1 HAVANA gene 175319 232145 2062.0 - 0 ENSG00000282643.1 antisense DLGAP2-AS1 2 OTTHUMG00000190696.1 +4222 KI270900.1 HAVANA gene 112163 317741 10987.0 + 0 ENSG00000274161.4 protein_coding DLGAP2 2 OTTHUMG00000190695.2 +4223 KI270901.1 HAVANA gene 19294 45476 720.0 + 0 ENSG00000282029.1 lincRNA AC120035.1 2 OTTHUMG00000190699.1 +4224 KI270901.1 HAVANA gene 106482 118755 629.0 + 0 ENSG00000282515.1 processed_transcript AC242019.1 2 OTTHUMG00000190698.1 overlapping_locus +4225 KI270902.1 ENSEMBL gene 11164 11267 104.0 + 0 ENSG00000274980.1 snRNA RNU6-1025P 3 +4226 KI270902.1 HAVANA gene 3478 74982 9186.0 + 0 ENSG00000280759.2 protein_coding AP2A2 2 OTTHUMG00000189857.2 ncRNA_host +4227 KI270902.1 HAVANA gene 75564 106271 15251.0 - 0 ENSG00000277518.3 polymorphic_pseudogene MUC6 2 OTTHUMG00000189858.1 +4228 KI270903.1 HAVANA gene 30571 48447 4616.0 - 0 ENSG00000278165.3 protein_coding DUSP8 2 OTTHUMG00000190082.1 +4229 KI270903.1 HAVANA gene 60879 61820 942.0 - 0 ENSG00000280585.1 protein_coding KRTAP5-1 2 OTTHUMG00000190084.1 +4230 KI270903.1 HAVANA gene 73720 74837 1118.0 - 0 ENSG00000281533.1 protein_coding KRTAP5-2 2 OTTHUMG00000190085.1 +4231 KI270903.1 HAVANA gene 47880 75727 2931.0 + 0 ENSG00000281176.1 antisense KRTAP5-AS1 2 OTTHUMG00000190083.1 +4232 KI270903.1 HAVANA gene 84118 85016 899.0 - 0 ENSG00000281191.2 protein_coding KRTAP5-3 2 OTTHUMG00000190088.2 +4233 KI270903.1 HAVANA gene 97515 98873 1359.0 - 0 ENSG00000278620.3 protein_coding KRTAP5-4 2 OTTHUMG00000190087.2 +4234 KI270903.1 HAVANA gene 106511 107395 885.0 + 0 ENSG00000278302.2 protein_coding KRTAP5-5 2 OTTHUMG00000190086.2 +4235 KI270903.1 HAVANA gene 136344 137103 588.0 - 0 ENSG00000281111.1 lincRNA AC130310.1 2 OTTHUMG00000190119.1 +4236 KI270903.1 HAVANA gene 139669 141959 2189.0 + 0 ENSG00000281261.1 lincRNA FAM99A 2 OTTHUMG00000190089.2 +4237 KI270903.1 HAVANA gene 157057 159125 1067.0 - 0 ENSG00000281829.1 antisense FAM99B 2 OTTHUMG00000190090.1 +4238 KI270903.1 HAVANA gene 162075 162834 587.0 + 0 ENSG00000281633.1 lincRNA AC130310.2 2 OTTHUMG00000190091.1 +4239 KI270903.1 HAVANA gene 170941 171501 561.0 + 0 ENSG00000277389.1 protein_coding KRTAP5-6 2 OTTHUMG00000190093.1 +4240 KI270903.1 HAVANA gene 206156 209175 3020.0 - 0 ENSG00000281618.1 protein_coding IFITM10 2 OTTHUMG00000190094.2 +4241 KI270904.1 HAVANA gene 238 1333 1096.0 - 0 ENSG00000274327.1 protein_coding TAS2R7 2 OTTHUMG00000190767.1 +4242 KI270904.1 HAVANA gene 4757 5999 1243.0 - 0 ENSG00000277316.2 protein_coding TAS2R8 2 OTTHUMG00000190768.2 +4243 KI270904.1 HAVANA gene 7843 8874 1032.0 - 0 ENSG00000273713.2 protein_coding TAS2R9 2 OTTHUMG00000190769.3 +4244 KI270904.1 HAVANA gene 24023 25064 1042.0 - 0 ENSG00000277238.2 protein_coding TAS2R10 2 OTTHUMG00000190771.1 overlapping_locus +4245 KI270904.1 HAVANA gene 29780 30722 943.0 - 0 ENSG00000282174.1 processed_pseudogene AC006518.5 2 OTTHUMG00000190772.1 overlapping_locus +4246 KI270904.1 ENSEMBL gene 79717 82961 603.0 - 0 ENSG00000285332.1 protein_coding AC006518.8 3 +4247 KI270904.1 HAVANA gene 93649 95658 1075.0 - 0 ENSG00000282363.1 transcribed_processed_pseudogene AC006518.6 2 OTTHUMG00000190775.1 overlapping_locus +4248 KI270904.1 HAVANA gene 106632 108268 1637.0 - 0 ENSG00000277254.1 protein_coding TAS2R13 2 OTTHUMG00000190776.1 overlapping_locus +4249 KI270904.1 HAVANA gene 127942 131047 757.0 + 0 ENSG00000275679.4 protein_coding PRH2 2 OTTHUMG00000190777.1 +4250 KI270904.1 HAVANA gene 163131 164058 928.0 - 0 ENSG00000276217.2 processed_pseudogene TAS2R15P 2 OTTHUMG00000190779.1 overlapping_locus +4251 KI270904.1 HAVANA gene 184606 185605 1000.0 - 0 ENSG00000276167.1 protein_coding TAS2R50 2 OTTHUMG00000190780.1 overlapping_locus +4252 KI270904.1 HAVANA gene 195190 196570 1381.0 - 0 ENSG00000282612.1 protein_coding TAS2R20 2 OTTHUMG00000190781.1 overlapping_locus +4253 KI270904.1 HAVANA gene 220313 221314 1002.0 - 0 ENSG00000278307.3 protein_coding TAS2R19 2 OTTHUMG00000190782.1 overlapping_locus +4254 KI270904.1 HAVANA gene 229392 230412 1021.0 - 0 ENSG00000282256.1 protein_coding TAS2R31 2 OTTHUMG00000190783.1 overlapping_locus +4255 KI270904.1 HAVANA gene 247327 248256 930.0 - 0 ENSG00000282293.1 processed_pseudogene TAS2R63P 2 OTTHUMG00000190784.1 overlapping_locus +4256 KI270904.1 HAVANA gene 262229 263158 930.0 - 0 ENSG00000278111.4 protein_coding TAS2R46 2 OTTHUMG00000190785.1 overlapping_locus +4257 KI270904.1 HAVANA gene 278435 279357 923.0 - 0 ENSG00000282079.1 unprocessed_pseudogene TAS2R64P 2 OTTHUMG00000190786.1 overlapping_locus +4258 KI270904.1 HAVANA gene 291857 292786 930.0 - 0 ENSG00000282537.1 protein_coding TAS2R43 2 OTTHUMG00000190787.1 overlapping_locus +4259 KI270904.1 HAVANA gene 328319 329278 960.0 - 0 ENSG00000274699.4 protein_coding TAS2R30 2 OTTHUMG00000190788.2 overlapping_locus +4260 KI270904.1 HAVANA gene 353751 354661 911.0 - 0 ENSG00000282675.1 processed_pseudogene AC245078.2 2 OTTHUMG00000190789.1 overlapping_locus +4261 KI270904.1 HAVANA gene 361060 366293 385.0 - 0 ENSG00000282546.1 sense_intronic AC245078.1 2 OTTHUMG00000190790.1 overlapping_locus +4262 KI270904.1 HAVANA gene 23666 366484 1792.0 - 0 ENSG00000277823.4 protein_coding PRH1 2 OTTHUMG00000190770.1 overlapping_locus +4263 KI270904.1 HAVANA gene 136111 366513 2351.0 - 0 ENSG00000276541.2 protein_coding TAS2R14 2 OTTHUMG00000190778.1 overlapping_locus +4264 KI270904.1 HAVANA gene 44555 366538 1618.0 - 0 ENSG00000277454.2 protein_coding PRH1-PRR4 2 OTTHUMG00000190773.1 overlapping_locus +4265 KI270904.1 HAVANA gene 44555 366553 3026.0 - 0 ENSG00000282269.1 protein_coding PRR4 2 OTTHUMG00000190774.1 overlapping_locus +4266 KI270904.1 HAVANA gene 366162 370955 4794.0 + 0 ENSG00000281930.1 lincRNA SMIM10L1 2 OTTHUMG00000190791.1 +4267 KI270904.1 HAVANA gene 380956 381900 945.0 - 0 ENSG00000273505.1 protein_coding TAS2R42 2 OTTHUMG00000190792.2 +4268 KI270904.1 HAVANA gene 391038 391959 922.0 - 0 ENSG00000281977.1 processed_pseudogene AC244131.3 2 OTTHUMG00000190793.1 +4269 KI270904.1 HAVANA gene 407182 446352 512.0 + 0 ENSG00000282539.1 lincRNA AC244131.4 2 OTTHUMG00000190794.1 +4270 KI270904.1 HAVANA gene 460887 464768 1386.0 - 0 ENSG00000275624.4 protein_coding PRB3 2 OTTHUMG00000190795.1 +4271 KI270904.1 HAVANA gene 502046 505398 916.0 - 0 ENSG00000274839.5 protein_coding PRB4 2 OTTHUMG00000190796.1 +4272 KI270904.1 HAVANA gene 546786 550554 1171.0 - 0 ENSG00000282673.1 protein_coding PRB1 2 OTTHUMG00000190797.1 +4273 KI270905.1 HAVANA gene 29991 30869 879.0 + 0 ENSG00000282545.1 processed_pseudogene RPL5P32 2 OTTHUMG00000190839.1 +4274 KI270905.1 HAVANA gene 5441 233657 3530.0 - 0 ENSG00000277361.2 protein_coding OCA2 2 OTTHUMG00000190838.2 +4275 KI270905.1 HAVANA gene 562875 563283 409.0 + 0 ENSG00000282105.1 processed_pseudogene RPL41P2 2 OTTHUMG00000190906.1 +4276 KI270905.1 HAVANA gene 244504 569367 10343.0 - 0 ENSG00000276802.2 protein_coding HERC2 2 OTTHUMG00000190840.2 fragmented_locus +4277 KI270905.1 HAVANA gene 579445 582280 559.0 + 0 ENSG00000282544.1 unprocessed_pseudogene AC243660.7 2 OTTHUMG00000191320.1 +4278 KI270905.1 HAVANA gene 593705 593862 158.0 + 0 ENSG00000282006.1 processed_pseudogene AC243660.1 2 OTTHUMG00000190907.1 +4279 KI270905.1 HAVANA gene 596266 605217 3018.0 - 0 ENSG00000282475.1 unprocessed_pseudogene AC243660.6 2 OTTHUMG00000190849.1 +4280 KI270905.1 HAVANA gene 609965 612899 620.0 - 0 ENSG00000282190.1 unprocessed_pseudogene AC243660.4 2 OTTHUMG00000190908.1 +4281 KI270905.1 ENSEMBL gene 634376 634633 258.0 + 0 ENSG00000273839.1 misc_RNA RF00017 3 +4282 KI270905.1 HAVANA gene 625803 639202 6319.0 + 0 ENSG00000278310.2 transcribed_unprocessed_pseudogene GOLGA8F 2 OTTHUMG00000190909.1 +4283 KI270905.1 HAVANA gene 649964 652126 2163.0 + 0 ENSG00000282479.1 processed_pseudogene ABCB10P3 2 OTTHUMG00000191350.1 +4284 KI270905.1 HAVANA gene 663546 663771 226.0 + 0 ENSG00000282779.1 processed_pseudogene AC243660.8 2 OTTHUMG00000191351.2 +4285 KI270905.1 HAVANA gene 669318 669470 153.0 + 0 ENSG00000282038.1 processed_pseudogene AC243660.2 2 OTTHUMG00000191463.1 +4286 KI270905.1 HAVANA gene 675018 675170 153.0 + 0 ENSG00000282073.1 processed_pseudogene AC243660.3 2 OTTHUMG00000191464.1 +4287 KI270905.1 HAVANA gene 680718 680870 153.0 + 0 ENSG00000282224.1 processed_pseudogene AC243660.5 2 OTTHUMG00000191465.1 +4288 KI270905.1 HAVANA gene 686418 686570 153.0 + 0 ENSG00000282060.1 processed_pseudogene AC243913.2 2 OTTHUMG00000191466.1 +4289 KI270905.1 HAVANA gene 692114 692266 153.0 + 0 ENSG00000282696.1 processed_pseudogene AC243913.11 2 OTTHUMG00000191467.1 +4290 KI270905.1 HAVANA gene 697762 697966 205.0 + 0 ENSG00000282169.1 processed_pseudogene AC243913.5 2 OTTHUMG00000191468.1 +4291 KI270905.1 HAVANA gene 719931 720056 126.0 + 0 ENSG00000282660.1 unprocessed_pseudogene AC243913.10 2 OTTHUMG00000191372.1 +4292 KI270905.1 HAVANA gene 730459 733583 760.0 - 0 ENSG00000282368.1 unprocessed_pseudogene AC243913.6 2 OTTHUMG00000191369.1 +4293 KI270905.1 HAVANA gene 749127 749250 124.0 - 0 ENSG00000282118.1 processed_pseudogene AC243913.3 2 OTTHUMG00000191370.1 +4294 KI270905.1 HAVANA gene 770772 770979 208.0 - 0 ENSG00000282023.1 processed_pseudogene AC243913.1 2 OTTHUMG00000191366.1 +4295 KI270905.1 HAVANA gene 782424 784605 2182.0 - 0 ENSG00000282004.1 processed_pseudogene ABCB10P4 2 OTTHUMG00000191355.1 +4296 KI270905.1 ENSEMBL gene 799946 800235 290.0 - 0 ENSG00000278003.1 misc_RNA RF00017 3 +4297 KI270905.1 HAVANA gene 795406 808766 6110.0 - 0 ENSG00000277090.2 protein_coding GOLGA8G 2 OTTHUMG00000191352.2 ncRNA_host +4298 KI270905.1 HAVANA gene 821707 825572 622.0 + 0 ENSG00000282145.1 unprocessed_pseudogene AC243913.4 2 OTTHUMG00000191364.1 +4299 KI270905.1 HAVANA gene 829429 837166 2468.0 + 0 ENSG00000282444.1 unprocessed_pseudogene AC243913.8 2 OTTHUMG00000191365.2 +4300 KI270905.1 HAVANA gene 840777 840935 159.0 - 0 ENSG00000282422.1 processed_pseudogene AC243913.7 2 OTTHUMG00000191353.1 +4301 KI270905.1 HAVANA gene 850810 855182 716.0 - 0 ENSG00000282567.1 unprocessed_pseudogene AC243913.9 2 OTTHUMG00000190910.1 +4302 KI270905.1 HAVANA gene 865980 961057 12665.0 + 0 ENSG00000282417.1 transcribed_unprocessed_pseudogene HERC2P9 2 OTTHUMG00000191373.1 +4303 KI270905.1 ENSEMBL gene 979342 979578 237.0 - 0 ENSG00000275257.1 misc_RNA RF00017 3 +4304 KI270905.1 HAVANA gene 977742 988111 1807.0 - 0 ENSG00000278186.2 unprocessed_pseudogene GOLGA8M 2 OTTHUMG00000191376.1 overlapping_locus +4305 KI270905.1 HAVANA gene 1013374 1034993 6106.0 + 0 ENSG00000282540.1 transcribed_unprocessed_pseudogene WHAMMP2 2 OTTHUMG00000191377.1 +4306 KI270905.1 HAVANA gene 1039232 1039943 712.0 - 0 ENSG00000282072.1 processed_pseudogene AC243657.1 2 OTTHUMG00000191378.1 +4307 KI270905.1 HAVANA gene 1064991 1065278 288.0 + 0 ENSG00000282198.1 transcribed_processed_pseudogene AC243657.2 2 OTTHUMG00000191384.1 overlapping_locus +4308 KI270905.1 HAVANA gene 1064035 1067794 965.0 + 0 ENSG00000282648.1 transcribed_unprocessed_pseudogene AC243657.3 2 OTTHUMG00000191383.1 overlapping_locus +4309 KI270905.1 HAVANA gene 1065456 1077288 698.0 + 0 ENSG00000282655.1 transcribed_unprocessed_pseudogene PDCD6IPP2 2 OTTHUMG00000191385.1 overlapping_locus +4310 KI270905.1 HAVANA gene 1194322 1393362 6173.0 + 0 ENSG00000276495.4 protein_coding APBA2 2 OTTHUMG00000191387.2 +4311 KI270905.1 ENSEMBL gene 1509401 1509512 112.0 + 0 ENSG00000276132.1 snoRNA RF00201 3 +4312 KI270905.1 HAVANA gene 1509206 1510670 1465.0 - 0 ENSG00000281925.1 processed_pseudogene AC243902.1 2 OTTHUMG00000191395.1 overlapping_locus +4313 KI270905.1 HAVANA gene 1543700 1545380 1681.0 - 0 ENSG00000282130.1 protein_coding NSMCE3 2 OTTHUMG00000191396.1 overlapping_locus +4314 KI270905.1 HAVANA gene 1649091 1652445 3355.0 - 0 ENSG00000282503.1 sense_intronic AC243686.1 2 OTTHUMG00000191397.1 overlapping_locus +4315 KI270905.1 HAVANA gene 1394883 1854904 5538.0 - 0 ENSG00000273564.2 protein_coding FAM189A1 2 OTTHUMG00000191394.2 overlapping_locus +4316 KI270905.1 ENSEMBL gene 2014844 2015116 273.0 + 0 ENSG00000272101.2 processed_pseudogene AC243587.1 3 +4317 KI270905.1 ENSEMBL gene 1984289 2106633 7650.0 - 0 ENSG00000277401.4 protein_coding TJP1 3 +4318 KI270905.1 ENSEMBL gene 2376866 2377102 237.0 + 0 ENSG00000276120.1 misc_RNA RF00017 3 +4319 KI270905.1 ENSEMBL gene 2368159 2381905 5199.0 + 0 ENSG00000278119.1 protein_coding AC243949.1 3 ncRNA_host +4320 KI270905.1 ENSEMBL gene 2397419 2397551 133.0 + 0 ENSG00000275394.1 snoRNA RF00096 3 +4321 KI270905.1 ENSEMBL gene 2428957 2429193 237.0 + 0 ENSG00000273660.1 misc_RNA RF00017 3 +4322 KI270905.1 ENSEMBL gene 2495327 2495725 399.0 + 0 ENSG00000276253.1 protein_coding AC243790.1 3 +4323 KI270905.1 ENSEMBL gene 2539360 2539466 107.0 - 0 ENSG00000277419.1 snRNA RF00026 3 +4324 KI270905.1 ENSEMBL gene 2640378 2640482 105.0 + 0 ENSG00000275698.1 misc_RNA RF00019 3 +4325 KI270905.1 ENSEMBL gene 2669835 2669967 133.0 - 0 ENSG00000276367.1 snoRNA RF00096 3 +4326 KI270905.1 ENSEMBL gene 2646214 2678539 3033.0 - 0 ENSG00000275917.4 protein_coding CHRFAM7A 3 ncRNA_host +4327 KI270905.1 ENSEMBL gene 2690199 2690489 291.0 - 0 ENSG00000278118.1 misc_RNA RF00017 3 +4328 KI270905.1 ENSEMBL gene 2845611 2845901 291.0 + 0 ENSG00000276439.1 misc_RNA RF00017 3 +4329 KI270905.1 ENSEMBL gene 2866125 2866257 133.0 + 0 ENSG00000275648.1 snoRNA RF00096 3 +4330 KI270905.1 ENSEMBL gene 2897664 2897900 237.0 + 0 ENSG00000277167.1 misc_RNA RF00017 3 +4331 KI270905.1 ENSEMBL gene 2959290 2959383 94.0 + 0 ENSG00000277980.1 misc_RNA RF00019 3 +4332 KI270905.1 ENSEMBL gene 2911147 2971326 2042.0 + 0 ENSG00000274734.1 protein_coding ARHGAP11B 3 ncRNA_host +4333 KI270905.1 ENSEMBL gene 3085872 3086108 237.0 + 0 ENSG00000276152.1 misc_RNA RF00017 3 +4334 KI270905.1 ENSEMBL gene 3189605 3228834 4888.0 + 0 ENSG00000276787.1 protein_coding FAN1 3 +4335 KI270905.1 ENSEMBL gene 3241979 3242081 103.0 - 0 ENSG00000277262.1 snRNA RF00026 3 +4336 KI270905.1 ENSEMBL gene 3227199 3277258 2334.0 - 0 ENSG00000277086.3 protein_coding MTMR10 3 ncRNA_host +4337 KI270905.1 ENSEMBL gene 3286821 3447037 6207.0 - 0 ENSG00000274965.4 protein_coding TRPM1 3 +4338 KI270905.1 ENSEMBL gene 3612704 3663742 6803.0 + 0 ENSG00000275746.1 protein_coding KLF13 3 +4339 KI270905.1 ENSEMBL gene 4213445 4213576 132.0 + 0 ENSG00000273538.1 snoRNA RF00425 3 +4340 KI270905.1 ENSEMBL gene 4315611 4454253 2071.0 + 0 ENSG00000274542.1 protein_coding AC243734.1 3 +4341 KI270905.1 ENSEMBL gene 4460579 4460683 105.0 - 0 ENSG00000278470.1 misc_RNA RF00019 3 +4342 KI270905.1 ENSEMBL gene 4569859 4569965 107.0 + 0 ENSG00000276847.1 snRNA RF00026 3 +4343 KI270905.1 ENSEMBL gene 4816702 4816992 291.0 + 0 ENSG00000278115.1 misc_RNA RF00017 3 +4344 KI270905.1 ENSEMBL gene 4829724 4854533 6008.0 + 0 ENSG00000275568.4 protein_coding ARHGAP11A 3 +4345 KI270905.1 ENSEMBL gene 4856253 4911692 1244.0 + 0 ENSG00000277614.1 protein_coding SCG5 3 +4346 KI270905.1 ENSEMBL gene 4932598 4949251 4138.0 + 0 ENSG00000276886.4 protein_coding AC243948.1 3 +4347 KI270906.1 HAVANA gene 1630 4406 439.0 - 0 ENSG00000280807.2 protein_coding TUBGCP5 2 OTTHUMG00000190095.3 +4348 KI270906.1 HAVANA gene 52604 90834 1011.0 + 0 ENSG00000281725.1 transcribed_unprocessed_pseudogene ELMO2P1 2 OTTHUMG00000190096.1 +4349 KI270906.1 HAVANA gene 97778 106332 2620.0 - 0 ENSG00000278247.2 protein_coding GOLGA6L1 2 OTTHUMG00000190097.1 +4350 KI270906.1 HAVANA gene 110073 113932 668.0 - 0 ENSG00000281737.1 unprocessed_pseudogene AC116165.9 2 OTTHUMG00000190098.1 +4351 KI270906.1 ENSEMBL gene 135407 135696 290.0 + 0 ENSG00000277046.1 misc_RNA RF00017 3 +4352 KI270906.1 HAVANA gene 126938 137857 2888.0 + 0 ENSG00000278508.3 transcribed_unprocessed_pseudogene GOLGA8EP 2 OTTHUMG00000190099.1 +4353 KI270906.1 HAVANA gene 149379 151559 2181.0 + 0 ENSG00000281173.1 processed_pseudogene ABCB10P1 2 OTTHUMG00000190100.1 +4354 KI270906.1 HAVANA gene 163001 163206 206.0 + 0 ENSG00000280490.1 processed_pseudogene AC116165.5 2 OTTHUMG00000190101.1 +4355 KI270906.1 HAVANA gene 184681 184818 138.0 + 0 ENSG00000281254.1 processed_pseudogene AC116165.8 2 OTTHUMG00000190103.1 +4356 KI270906.1 HAVANA gene 195386 195901 400.0 - 0 ENSG00000281754.1 unprocessed_pseudogene AC116165.10 2 OTTHUMG00000190102.1 +4357 KI270907.1 HAVANA gene 45756 47901 913.0 - 0 ENSG00000282426.1 antisense AC129507.8 2 OTTHUMG00000190902.1 overlapping_locus +4358 KI270907.1 HAVANA gene 45057 50000 748.0 - 0 ENSG00000282336.1 antisense AC129507.7 2 OTTHUMG00000190901.1 overlapping_locus +4359 KI270907.1 HAVANA gene 69150 71433 2284.0 - 0 ENSG00000275886.2 processed_transcript AC129507.6 2 OTTHUMG00000190903.1 +4360 KI270907.1 HAVANA gene 80185 81246 432.0 - 0 ENSG00000282357.1 antisense AC240137.1 2 OTTHUMG00000190904.1 +4361 KI270907.1 HAVANA gene 16384 122925 3393.0 + 0 ENSG00000282013.1 protein_coding RPH3AL 2 OTTHUMG00000190900.2 +4362 KI270908.1 HAVANA gene 7463 7543 81.0 - 0 ENSG00000282637.1 processed_transcript MAP3K14 2 OTTHUMG00000190406.1 +4363 KI270908.1 ENSEMBL gene 17869 18000 132.0 - 0 ENSG00000275780.1 rRNA_pseudogene AC003070.3 3 +4364 KI270908.1 HAVANA gene 61905 62560 386.0 - 0 ENSG00000282563.1 lincRNA AC003070.5 2 OTTHUMG00000190407.1 +4365 KI270908.1 HAVANA gene 87435 87980 457.0 + 0 ENSG00000281982.1 antisense AC003070.4 2 OTTHUMG00000190405.1 +4366 KI270908.1 HAVANA gene 84405 124926 10426.0 - 0 ENSG00000276907.4 protein_coding ARHGAP27 2 OTTHUMG00000190404.2 +4367 KI270908.1 HAVANA gene 143002 154223 769.0 + 0 ENSG00000282325.1 antisense AC244207.1 2 OTTHUMG00000190409.1 +4368 KI270908.1 HAVANA gene 126405 180904 9233.0 - 0 ENSG00000276358.2 protein_coding PLEKHM1 2 OTTHUMG00000190408.2 +4369 KI270908.1 ENSEMBL gene 228602 228882 281.0 - 0 ENSG00000275587.1 misc_RNA RF00017 3 +4370 KI270908.1 HAVANA gene 233715 235976 2262.0 + 0 ENSG00000282727.1 lincRNA AC244207.2 2 OTTHUMG00000190411.1 +4371 KI270908.1 HAVANA gene 196896 252473 6491.0 - 0 ENSG00000282331.1 transcribed_unprocessed_pseudogene LRRC37A4P 2 OTTHUMG00000190410.1 overlapping_locus +4372 KI270908.1 HAVANA gene 251919 260876 826.0 - 0 ENSG00000282002.1 lincRNA AC243807.1 2 OTTHUMG00000190413.1 overlapping_locus +4373 KI270908.1 HAVANA gene 247942 265368 2278.0 + 0 ENSG00000282491.1 lincRNA AC243807.3 2 OTTHUMG00000190412.1 +4374 KI270908.1 HAVANA gene 288010 289068 1059.0 + 0 ENSG00000282614.1 processed_pseudogene DND1P1 2 OTTHUMG00000190414.1 +4375 KI270908.1 HAVANA gene 303010 304481 1472.0 - 0 ENSG00000282351.1 processed_pseudogene MAPK8IP1P2 2 OTTHUMG00000190415.1 +4376 KI270908.1 HAVANA gene 310707 311054 348.0 + 0 ENSG00000282238.1 processed_pseudogene RPS26P8 2 OTTHUMG00000190416.1 +4377 KI270908.1 HAVANA gene 322452 350344 8638.0 + 0 ENSG00000282171.1 transcribed_unprocessed_pseudogene LINC02210 2 OTTHUMG00000190417.1 overlapping_locus +4378 KI270908.1 HAVANA gene 433803 435077 517.0 - 0 ENSG00000282523.1 lincRNA AC243807.4 2 OTTHUMG00000190420.1 +4379 KI270908.1 HAVANA gene 435453 436769 560.0 - 0 ENSG00000282361.1 lincRNA AC243807.2 2 OTTHUMG00000190421.1 +4380 KI270908.1 HAVANA gene 324032 518665 634.0 + 0 ENSG00000282456.1 processed_transcript LINC02210-CRHR1 2 OTTHUMG00000190419.1 overlapping_locus +4381 KI270908.1 HAVANA gene 486391 537950 3285.0 + 0 ENSG00000276191.4 protein_coding CRHR1 2 OTTHUMG00000190422.2 overlapping_locus +4382 KI270908.1 HAVANA gene 546956 549193 2238.0 + 0 ENSG00000277106.2 protein_coding SPPL2C 2 OTTHUMG00000190425.1 +4383 KI270908.1 HAVANA gene 545477 597728 1911.0 - 0 ENSG00000282067.1 antisense MAPT-AS1 2 OTTHUMG00000190424.1 +4384 KI270908.1 HAVANA gene 597911 600926 3016.0 + 0 ENSG00000282620.1 sense_intronic MAPT-IT1 2 OTTHUMG00000190427.1 overlapping_locus +4385 KI270908.1 HAVANA gene 609777 612879 759.0 - 0 ENSG00000282165.1 antisense AC243621.1 2 OTTHUMG00000190428.1 +4386 KI270908.1 ENSEMBL gene 633939 634216 278.0 + 0 ENSG00000275602.1 misc_RNA RF00017 3 +4387 KI270908.1 HAVANA gene 596513 730446 14920.0 + 0 ENSG00000277956.4 protein_coding MAPT 2 OTTHUMG00000190426.2 ncRNA_host,overlapping_locus +4388 KI270908.1 HAVANA gene 737425 737882 304.0 + 0 ENSG00000282279.1 antisense AC243658.1 2 OTTHUMG00000190430.1 +4389 KI270908.1 HAVANA gene 895680 898827 976.0 + 0 ENSG00000282799.1 antisense KANSL1-AS1 2 OTTHUMG00000190431.1 +4390 KI270908.1 ENSEMBL gene 917243 917344 102.0 - 0 ENSG00000276222.1 misc_RNA RF00019 3 +4391 KI270908.1 HAVANA gene 732028 927544 13926.0 - 0 ENSG00000278458.4 protein_coding KANSL1 2 OTTHUMG00000190429.3 ncRNA_host +4392 KI270908.1 HAVANA gene 946028 947466 1439.0 + 0 ENSG00000282723.1 processed_pseudogene MAPK8IP1P1 2 OTTHUMG00000190432.1 +4393 KI270908.1 HAVANA gene 961965 963012 1048.0 - 0 ENSG00000281927.1 processed_pseudogene AC243899.1 2 OTTHUMG00000190433.1 +4394 KI270908.1 HAVANA gene 969427 971082 674.0 + 0 ENSG00000282032.1 transcribed_unprocessed_pseudogene AC243899.2 2 OTTHUMG00000190434.1 +4395 KI270908.1 ENSEMBL gene 1057213 1057493 281.0 + 0 ENSG00000274171.1 misc_RNA RF00017 3 +4396 KI270908.1 HAVANA gene 1030000 1075355 6501.0 + 0 ENSG00000277221.2 protein_coding LRRC37A2 2 OTTHUMG00000190436.1 ncRNA_host +4397 KI270908.1 HAVANA gene 977173 1099388 4422.0 - 0 ENSG00000276276.4 protein_coding ARL17B 2 OTTHUMG00000190435.1 +4398 KI270908.1 HAVANA gene 1110453 1224280 1471.0 + 0 ENSG00000282733.1 unprocessed_pseudogene NSFP1 2 OTTHUMG00000190438.1 +4399 KI270908.1 HAVANA gene 1241011 1241596 586.0 - 0 ENSG00000282052.1 processed_pseudogene RPS7P11 2 OTTHUMG00000190439.1 +4400 KI270908.1 HAVANA gene 1110346 1276876 5005.0 + 0 ENSG00000276262.2 protein_coding NSF 2 OTTHUMG00000190437.2 +4401 KI270908.1 HAVANA gene 1281918 1352577 4335.0 - 0 ENSG00000277641.2 protein_coding WNT3 2 OTTHUMG00000190440.1 +4402 KI270908.1 HAVANA gene 1352624 1406147 3313.0 + 0 ENSG00000276799.2 protein_coding WNT9B 2 OTTHUMG00000190441.2 +4403 KI270909.1 HAVANA gene 18377 26129 1397.0 + 0 ENSG00000278006.2 protein_coding CCL18 2 OTTHUMG00000191283.1 +4404 KI270909.1 HAVANA gene 26963 44231 1630.0 + 0 ENSG00000282775.1 antisense AC243829.9 2 OTTHUMG00000191284.1 +4405 KI270909.1 HAVANA gene 42353 44266 1494.0 - 0 ENSG00000278567.2 protein_coding CCL3 2 OTTHUMG00000191286.1 +4406 KI270909.1 ENSEMBL gene 57924 59718 667.0 + 0 ENSG00000277943.4 protein_coding CCL4 3 +4407 KI270909.1 ENSEMBL gene 64247 64544 298.0 + 0 ENSG00000274169.1 misc_RNA RN7SL301P 3 +4408 KI270909.1 HAVANA gene 115703 117029 228.0 + 0 ENSG00000282389.1 unprocessed_pseudogene AC131056.3 2 OTTHUMG00000191288.1 +4409 KI270909.1 HAVANA gene 119784 130698 2081.0 - 0 ENSG00000282750.1 unprocessed_pseudogene AC131056.7 2 OTTHUMG00000191289.1 +4410 KI270909.1 HAVANA gene 70274 131613 610.0 + 0 ENSG00000282763.1 antisense AC243829.8 2 OTTHUMG00000191287.1 +4411 KI270909.1 HAVANA gene 137350 150605 1401.0 + 0 ENSG00000282229.1 antisense AC131056.1 2 OTTHUMG00000191290.1 +4412 KI270909.1 HAVANA gene 149003 150892 784.0 - 0 ENSG00000277796.2 protein_coding CCL3L3 2 OTTHUMG00000191291.1 +4413 KI270909.1 HAVANA gene 165045 167015 1413.0 + 0 ENSG00000282604.1 protein_coding CCL4L2 2 OTTHUMG00000191292.1 +4414 KI270909.1 HAVANA gene 203748 205067 227.0 + 0 ENSG00000282512.1 unprocessed_pseudogene AC131056.5 2 OTTHUMG00000191293.1 +4415 KI270909.1 HAVANA gene 207820 218775 2845.0 - 0 ENSG00000278632.5 protein_coding TBC1D3B 2 OTTHUMG00000191294.1 +4416 KI270909.1 HAVANA gene 237046 238103 637.0 - 0 ENSG00000282319.1 unprocessed_pseudogene AC131056.2 2 OTTHUMG00000191295.1 +4417 KI270909.1 HAVANA gene 250577 252466 1469.0 - 0 ENSG00000277768.2 protein_coding CCL3L3 2 OTTHUMG00000191296.1 +4418 KI270909.1 HAVANA gene 266766 268581 856.0 + 0 ENSG00000275313.5 protein_coding CCL4L2 2 OTTHUMG00000191297.1 +4419 KI270909.1 HAVANA gene 280990 282550 247.0 - 0 ENSG00000282747.1 lincRNA AC131056.6 2 OTTHUMG00000191298.1 +4420 KI270909.1 HAVANA gene 290188 290292 105.0 - 0 ENSG00000282768.1 unprocessed_pseudogene AC131056.8 2 OTTHUMG00000191299.1 +4421 KI270909.1 HAVANA gene 297442 297541 100.0 + 0 ENSG00000282403.1 unprocessed_pseudogene AC131056.4 2 OTTHUMG00000191300.1 +4422 KI270909.1 HAVANA gene 309382 320313 2122.0 - 0 ENSG00000275861.4 protein_coding TBC1D3I 2 OTTHUMG00000191301.1 +4423 KI270910.1 HAVANA gene 17546 19017 784.0 - 0 ENSG00000281300.1 protein_coding NXN 2 OTTHUMG00000190141.3 +4424 KI270910.1 HAVANA gene 36364 42918 3194.0 + 0 ENSG00000278501.2 protein_coding TIMM22 2 OTTHUMG00000190142.1 +4425 KI270910.1 ENSEMBL gene 141024 141290 267.0 - 0 ENSG00000275991.1 misc_RNA RF00017 3 +4426 KI270910.1 HAVANA gene 42766 155453 8966.0 - 0 ENSG00000276016.4 protein_coding ABR 2 OTTHUMG00000190143.3 ncRNA_host +4427 KI270911.1 HAVANA gene 41670 44189 1732.0 - 0 ENSG00000282765.1 lincRNA LINC01896 2 OTTHUMG00000191329.1 +4428 KI270911.1 HAVANA gene 45390 67792 7397.0 + 0 ENSG00000277015.4 protein_coding SALL3 2 OTTHUMG00000191330.2 +4429 KI270911.1 HAVANA gene 153847 155148 1302.0 + 0 ENSG00000282460.1 TEC AC099689.2 2 OTTHUMG00000191332.1 overlapping_locus +4430 KI270911.1 HAVANA gene 137998 156391 793.0 + 0 ENSG00000282266.2 protein_coding ATP9B 2 OTTHUMG00000191331.3 overlapping_locus +4431 KI270912.1 HAVANA gene 11699 12944 397.0 + 0 ENSG00000282658.1 lincRNA AC012572.3 2 OTTHUMG00000191328.1 +4432 KI270912.1 ENSEMBL gene 50629 50722 94.0 - 0 ENSG00000273770.1 misc_RNA RF00019 3 +4433 KI270913.1 HAVANA gene 6753 59448 9046.0 - 0 ENSG00000273850.3 protein_coding PPP2R3B 2 OTTHUMG00000190005.2 +4434 KI270913.1 HAVANA gene 59473 78072 484.0 + 0 ENSG00000280484.1 antisense AL732314.1 2 OTTHUMG00000190006.1 +4435 KI270913.1 HAVANA gene 91650 94473 515.0 + 0 ENSG00000280769.1 lincRNA AL732314.5 2 OTTHUMG00000190007.1 +4436 KI270913.1 HAVANA gene 196268 196595 328.0 - 0 ENSG00000280877.1 processed_pseudogene FABP5P13 2 OTTHUMG00000190008.1 +4437 KI270913.1 HAVANA gene 217729 217845 117.0 - 0 ENSG00000281050.1 processed_pseudogene KRT18P53 2 OTTHUMG00000190009.1 +4438 KI270914.1 HAVANA gene 10672 26251 1295.0 - 0 ENSG00000274324.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000188756.1 +4439 KI270914.1 HAVANA gene 28192 42497 1865.0 - 0 ENSG00000276501.5 protein_coding KIR3DL1 2 OTTHUMG00000188757.1 +4440 KI270914.1 HAVANA gene 44450 55477 1728.0 - 0 ENSG00000274945.4 protein_coding KIR2DL4 2 OTTHUMG00000188758.1 +4441 KI270914.1 HAVANA gene 74679 89183 1593.0 - 0 ENSG00000277616.1 protein_coding KIR2DL1 2 OTTHUMG00000188759.1 +4442 KI270914.1 HAVANA gene 91424 103976 1254.0 - 0 ENSG00000276013.1 unprocessed_pseudogene GU182357.2 2 OTTHUMG00000188760.1 +4443 KI270914.1 HAVANA gene 106157 120954 1704.0 - 0 ENSG00000274243.5 protein_coding GU182357.1 2 OTTHUMG00000188761.1 +4444 KI270914.1 HAVANA gene 122889 132373 1596.0 - 0 ENSG00000278414.5 protein_coding GU182357.3 2 OTTHUMG00000188762.1 +4445 KI270914.1 HAVANA gene 134351 148898 1593.0 - 0 ENSG00000278731.5 protein_coding KIR2DL2 2 OTTHUMG00000188763.1 +4446 KI270914.1 HAVANA gene 150933 165052 1381.0 - 0 ENSG00000274518.1 protein_coding KIR2DS2 2 OTTHUMG00000188764.1 +4447 KI270914.1 HAVANA gene 167479 179121 1314.0 - 0 ENSG00000277620.1 protein_coding KIR3DL3 2 OTTHUMG00000188765.1 +4448 KI270914.1 HAVANA gene 190118 195655 2127.0 - 0 ENSG00000276247.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188886.1 +4449 KI270914.1 HAVANA gene 199336 199619 284.0 - 0 ENSG00000274130.1 unprocessed_pseudogene AC245128.7 2 OTTHUMG00000188887.1 +4450 KI270914.1 HAVANA gene 202666 202978 183.0 - 0 ENSG00000275112.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188888.1 +4451 KI270915.1 ENSEMBL gene 12 118 107.0 + 0 ENSG00000275168.1 snRNA RF00026 3 +4452 KI270915.1 HAVANA gene 1842 18600 1885.0 - 0 ENSG00000278442.4 protein_coding KIR3DL2 2 OTTHUMG00000188766.1 +4453 KI270915.1 HAVANA gene 20759 36388 1344.0 - 0 ENSG00000274947.1 protein_coding KIR2DS4 2 OTTHUMG00000188767.1 +4454 KI270915.1 HAVANA gene 38286 52591 1863.0 - 0 ENSG00000277272.5 protein_coding KIR3DL1 2 OTTHUMG00000188768.1 +4455 KI270915.1 HAVANA gene 54555 65471 1548.0 - 0 ENSG00000277964.1 protein_coding KIR2DL4 2 OTTHUMG00000188769.1 +4456 KI270915.1 HAVANA gene 78781 82636 879.0 - 0 ENSG00000276035.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188770.1 +4457 KI270915.1 HAVANA gene 85081 99337 1341.0 - 0 ENSG00000275750.1 protein_coding KIR2DL1 2 OTTHUMG00000188771.1 +4458 KI270915.1 HAVANA gene 101728 114076 1049.0 - 0 ENSG00000276970.1 unprocessed_pseudogene GU182358.1 2 OTTHUMG00000188772.1 +4459 KI270915.1 HAVANA gene 116161 130546 1464.0 - 0 ENSG00000276590.5 protein_coding KIR2DL3 2 OTTHUMG00000188773.1 +4460 KI270915.1 HAVANA gene 132944 144591 1314.0 - 0 ENSG00000274786.1 protein_coding KIR3DL3 2 OTTHUMG00000188774.1 +4461 KI270915.1 HAVANA gene 155589 161126 2127.0 - 0 ENSG00000276243.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188889.1 +4462 KI270915.1 HAVANA gene 164807 165090 284.0 - 0 ENSG00000274082.1 unprocessed_pseudogene AC245128.6 2 OTTHUMG00000188890.1 +4463 KI270915.1 HAVANA gene 168137 168449 183.0 - 0 ENSG00000276001.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188891.1 +4464 KI270916.1 ENSEMBL gene 254 360 107.0 + 0 ENSG00000274708.1 snRNA RF00026 3 +4465 KI270916.1 HAVANA gene 2084 18878 1885.0 - 0 ENSG00000278758.4 protein_coding KIR3DL2 2 OTTHUMG00000188746.1 +4466 KI270916.1 HAVANA gene 21201 35215 1101.0 - 0 ENSG00000275421.1 protein_coding KIR2DS1 2 OTTHUMG00000188747.1 +4467 KI270916.1 HAVANA gene 37592 52028 1193.0 - 0 ENSG00000277193.1 protein_coding GU182359.2 2 OTTHUMG00000188748.1 +4468 KI270916.1 HAVANA gene 53892 63388 1632.0 - 0 ENSG00000276392.1 protein_coding KIR2DL5A 2 OTTHUMG00000188749.1 +4469 KI270916.1 HAVANA gene 65476 80089 1795.0 - 0 ENSG00000276498.5 protein_coding KIR3DS1 2 OTTHUMG00000188750.1 +4470 KI270916.1 HAVANA gene 82011 93087 1742.0 - 0 ENSG00000277355.4 protein_coding KIR2DL4 2 OTTHUMG00000188751.1 +4471 KI270916.1 HAVANA gene 98252 111674 1294.0 - 0 ENSG00000276212.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188752.1 +4472 KI270916.1 HAVANA gene 113932 128293 1419.0 - 0 ENSG00000273578.1 protein_coding GU182359.1 2 OTTHUMG00000188753.1 +4473 KI270916.1 HAVANA gene 130392 144417 1286.0 - 0 ENSG00000276425.1 protein_coding KIR2DS2 2 OTTHUMG00000188754.1 +4474 KI270916.1 HAVANA gene 146389 158408 1691.0 - 0 ENSG00000275172.1 protein_coding KIR3DL3 2 OTTHUMG00000188755.1 +4475 KI270916.1 HAVANA gene 169440 174977 2127.0 - 0 ENSG00000274120.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188707.1 +4476 KI270916.1 HAVANA gene 181988 184516 322.0 + 0 ENSG00000276099.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188708.1 +4477 KI270917.1 HAVANA gene 3445 15460 1691.0 + 0 ENSG00000276806.1 protein_coding KIR3DL3 2 OTTHUMG00000188648.1 +4478 KI270917.1 HAVANA gene 17437 31965 1590.0 + 0 ENSG00000278327.5 protein_coding KIR2DL3 2 OTTHUMG00000188650.1 +4479 KI270917.1 HAVANA gene 33936 46284 1049.0 + 0 ENSG00000275815.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188651.1 +4480 KI270917.1 HAVANA gene 48732 63047 1479.0 + 0 ENSG00000276625.4 protein_coding KIR2DL1 2 OTTHUMG00000188652.1 +4481 KI270917.1 HAVANA gene 65375 77197 1223.0 + 0 ENSG00000278833.4 transcribed_processed_pseudogene GU182360.1 2 OTTHUMG00000188649.2 +4482 KI270917.1 HAVANA gene 82349 93459 1742.0 + 0 ENSG00000277850.4 protein_coding KIR2DL4 2 OTTHUMG00000188653.1 +4483 KI270917.1 HAVANA gene 95411 109723 1870.0 + 0 ENSG00000275717.5 protein_coding KIR3DL1 2 OTTHUMG00000188654.1 +4484 KI270917.1 HAVANA gene 111622 127537 1630.0 + 0 ENSG00000275353.1 protein_coding KIR2DS4 2 OTTHUMG00000188655.1 +4485 KI270917.1 HAVANA gene 129423 146154 1863.0 + 0 ENSG00000278809.4 protein_coding KIR3DL2 2 OTTHUMG00000188656.1 +4486 KI270917.1 ENSEMBL gene 147886 147992 107.0 - 0 ENSG00000275671.1 snRNA RF00026 3 +4487 KI270917.1 HAVANA gene 153195 169419 2366.0 + 0 ENSG00000275136.4 protein_coding FCAR 2 OTTHUMG00000188657.2 +4488 KI270917.1 HAVANA gene 185097 189012 720.0 + 0 ENSG00000277442.4 protein_coding NCR1 2 OTTHUMG00000188658.2 +4489 KI270918.1 HAVANA gene 2217 2529 183.0 + 0 ENSG00000277570.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188909.1 +4490 KI270918.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000276306.1 unprocessed_pseudogene AC245128.8 2 OTTHUMG00000188910.1 +4491 KI270918.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000275442.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188911.1 +4492 KI270918.1 HAVANA gene 40095 54629 1596.0 + 0 ENSG00000277484.5 protein_coding KIR2DL3 2 OTTHUMG00000188913.1 +4493 KI270918.1 HAVANA gene 56600 68949 1049.0 + 0 ENSG00000274851.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188914.1 +4494 KI270918.1 HAVANA gene 26077 69086 2173.0 + 0 ENSG00000274696.2 protein_coding KIR3DL3 2 OTTHUMG00000188912.1 +4495 KI270918.1 HAVANA gene 71389 85624 1320.0 + 0 ENSG00000274782.1 protein_coding KIR2DL1 2 OTTHUMG00000188915.1 +4496 KI270918.1 HAVANA gene 87898 91896 663.0 + 0 ENSG00000273688.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188916.1 +4497 KI270918.1 HAVANA gene 105165 116149 1581.0 + 0 ENSG00000274955.4 protein_coding KIR2DL4 2 OTTHUMG00000188917.1 +4498 KI270918.1 HAVANA gene 118120 122021 671.0 + 0 ENSG00000276379.1 protein_coding KIR3DL1 2 OTTHUMG00000188918.2 +4499 KI270919.1 ENSEMBL gene 13 119 107.0 + 0 ENSG00000273929.1 snRNA RF00026 3 +4500 KI270919.1 HAVANA gene 1843 18639 1885.0 - 0 ENSG00000278726.4 protein_coding KIR3DL2 2 OTTHUMG00000188928.1 +4501 KI270919.1 HAVANA gene 21000 36313 1028.0 - 0 ENSG00000275938.1 unprocessed_pseudogene KIR2DS4 2 OTTHUMG00000188929.1 +4502 KI270919.1 HAVANA gene 38341 52640 1860.0 - 0 ENSG00000275288.6 protein_coding KIR3DL1 2 OTTHUMG00000188930.1 +4503 KI270919.1 HAVANA gene 54561 65543 1657.0 - 0 ENSG00000275699.4 protein_coding KIR2DL4 2 OTTHUMG00000188931.1 +4504 KI270919.1 HAVANA gene 78760 82723 628.0 - 0 ENSG00000277742.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188932.1 +4505 KI270919.1 HAVANA gene 84943 99264 1406.0 - 0 ENSG00000278755.1 protein_coding KIR2DL1 2 OTTHUMG00000188933.1 +4506 KI270919.1 HAVANA gene 101707 114055 1049.0 - 0 ENSG00000273522.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188934.1 +4507 KI270919.1 HAVANA gene 116314 130572 1311.0 - 0 ENSG00000277317.5 protein_coding KIR2DL3 2 OTTHUMG00000188935.1 +4508 KI270919.1 HAVANA gene 132542 144599 1691.0 - 0 ENSG00000276930.1 protein_coding KIR3DL3 2 OTTHUMG00000188936.1 +4509 KI270919.1 HAVANA gene 155625 161162 2127.0 - 0 ENSG00000274826.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188937.1 +4510 KI270919.1 HAVANA gene 164843 165126 284.0 - 0 ENSG00000276974.1 unprocessed_pseudogene AC245128.11 2 OTTHUMG00000188938.1 +4511 KI270919.1 HAVANA gene 168173 168485 183.0 - 0 ENSG00000278325.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188939.1 +4512 KI270920.1 HAVANA gene 11327 23341 1691.0 + 0 ENSG00000277028.1 protein_coding KIR3DL3 2 OTTHUMG00000188696.1 overlapping_locus +4513 KI270920.1 HAVANA gene 25320 39891 1590.0 + 0 ENSG00000273887.1 protein_coding KIR2DL3 2 OTTHUMG00000188697.1 +4514 KI270920.1 HAVANA gene 41799 54665 1851.0 + 0 ENSG00000277375.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188698.1 +4515 KI270920.1 HAVANA gene 56651 71164 1678.0 + 0 ENSG00000278495.4 protein_coding KIR2DL1 2 OTTHUMG00000188699.1 overlapping_locus +4516 KI270920.1 HAVANA gene 73301 85123 1223.0 + 0 ENSG00000277691.4 transcribed_unprocessed_pseudogene GU182338.1 2 OTTHUMG00000188700.1 overlapping_locus +4517 KI270920.1 HAVANA gene 90468 101384 1615.0 + 0 ENSG00000275317.4 protein_coding KIR2DL4 2 OTTHUMG00000188701.1 +4518 KI270920.1 HAVANA gene 103340 117653 1871.0 + 0 ENSG00000275786.5 protein_coding KIR3DL1 2 OTTHUMG00000188702.1 +4519 KI270920.1 HAVANA gene 119551 134587 1630.0 + 0 ENSG00000276885.1 protein_coding KIR2DS4 2 OTTHUMG00000188703.1 +4520 KI270920.1 HAVANA gene 136461 153231 1877.0 + 0 ENSG00000275629.4 protein_coding KIR3DL2 2 OTTHUMG00000188704.1 +4521 KI270920.1 ENSEMBL gene 154963 155069 107.0 - 0 ENSG00000278063.1 snRNA RF00026 3 +4522 KI270920.1 HAVANA gene 160268 176492 2366.0 + 0 ENSG00000275970.4 protein_coding FCAR 2 OTTHUMG00000188705.2 +4523 KI270920.1 HAVANA gene 192170 196085 720.0 + 0 ENSG00000276450.1 protein_coding NCR1 2 OTTHUMG00000188706.2 +4524 KI270921.1 HAVANA gene 23042 35060 1694.0 + 0 ENSG00000277552.1 protein_coding KIR3DL3 2 OTTHUMG00000188799.1 +4525 KI270921.1 HAVANA gene 37082 50989 1169.0 + 0 ENSG00000277885.1 protein_coding KIR2DS2 2 OTTHUMG00000188800.1 +4526 KI270921.1 HAVANA gene 53236 67566 1371.0 + 0 ENSG00000276011.1 protein_coding KIR2DL2 2 OTTHUMG00000188801.1 +4527 KI270921.1 HAVANA gene 69812 79091 1395.0 + 0 ENSG00000275937.1 protein_coding GU182339.3 2 OTTHUMG00000188802.1 +4528 KI270921.1 HAVANA gene 81193 95628 1193.0 + 0 ENSG00000278306.1 protein_coding KIR2DS3 2 OTTHUMG00000188803.1 +4529 KI270921.1 HAVANA gene 98010 110367 1056.0 + 0 ENSG00000275795.1 unprocessed_pseudogene GU182339.2 2 OTTHUMG00000188804.1 +4530 KI270921.1 HAVANA gene 112810 127052 1320.0 + 0 ENSG00000276820.1 protein_coding KIR2DL1 2 OTTHUMG00000188805.1 +4531 KI270921.1 HAVANA gene 129469 141286 1223.0 + 0 ENSG00000277835.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188806.1 +4532 KI270921.1 HAVANA gene 146451 157527 1742.0 + 0 ENSG00000275732.4 protein_coding KIR2DL4 2 OTTHUMG00000188807.1 +4533 KI270921.1 HAVANA gene 159475 174062 1769.0 + 0 ENSG00000274465.5 protein_coding KIR3DS1 2 OTTHUMG00000188808.1 +4534 KI270921.1 HAVANA gene 176150 185646 1632.0 + 0 ENSG00000278116.1 protein_coding KIR2DL5A 2 OTTHUMG00000188809.1 +4535 KI270921.1 HAVANA gene 187510 201946 1193.0 + 0 ENSG00000275500.1 protein_coding GU182339.1 2 OTTHUMG00000188810.1 +4536 KI270921.1 HAVANA gene 204317 218787 1557.0 + 0 ENSG00000276327.1 protein_coding KIR2DS1 2 OTTHUMG00000188811.1 +4537 KI270921.1 HAVANA gene 220660 237454 1885.0 + 0 ENSG00000276882.4 protein_coding KIR3DL2 2 OTTHUMG00000188812.1 +4538 KI270921.1 ENSEMBL gene 239178 239284 107.0 - 0 ENSG00000274597.1 snRNA RF00026 3 +4539 KI270921.1 HAVANA gene 244487 260711 2366.0 + 0 ENSG00000276985.4 protein_coding FCAR 2 OTTHUMG00000188709.2 +4540 KI270921.1 HAVANA gene 276389 280304 985.0 + 0 ENSG00000278025.4 protein_coding NCR1 2 OTTHUMG00000188710.2 +4541 KI270922.1 HAVANA gene 458 12473 1691.0 + 0 ENSG00000277392.1 protein_coding KIR3DL3 2 OTTHUMG00000188863.1 +4542 KI270922.1 HAVANA gene 14460 28965 1579.0 + 0 ENSG00000274108.5 protein_coding KIR2DL3 2 OTTHUMG00000188864.1 +4543 KI270922.1 HAVANA gene 30937 43285 1280.0 + 0 ENSG00000278329.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188865.1 +4544 KI270922.1 HAVANA gene 45725 59960 1320.0 + 0 ENSG00000277356.1 protein_coding KIR2DL1 2 OTTHUMG00000188866.1 +4545 KI270922.1 HAVANA gene 62377 74199 1223.0 + 0 ENSG00000275751.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188867.1 +4546 KI270922.1 HAVANA gene 79551 90455 1536.0 + 0 ENSG00000277750.1 protein_coding KIR2DL4 2 OTTHUMG00000188868.1 +4547 KI270922.1 HAVANA gene 92411 106723 1870.0 + 0 ENSG00000278368.5 protein_coding KIR3DL1 2 OTTHUMG00000188869.1 +4548 KI270922.1 HAVANA gene 108665 124242 1295.0 + 0 ENSG00000276465.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000188870.1 +4549 KI270922.1 HAVANA gene 126387 143165 1885.0 + 0 ENSG00000278710.4 protein_coding KIR3DL2 2 OTTHUMG00000188871.1 +4550 KI270922.1 ENSEMBL gene 144889 144995 107.0 - 0 ENSG00000277567.1 snRNA RF00026 3 +4551 KI270922.1 HAVANA gene 150198 166422 2366.0 + 0 ENSG00000276858.4 protein_coding FCAR 2 OTTHUMG00000188711.2 +4552 KI270922.1 HAVANA gene 182100 186015 985.0 + 0 ENSG00000275521.4 protein_coding NCR1 2 OTTHUMG00000188712.2 +4553 KI270923.1 HAVANA gene 26 4330 1208.0 + 0 ENSG00000274788.4 transcribed_unprocessed_pseudogene LILRP2 2 OTTHUMG00000188943.1 +4554 KI270923.1 HAVANA gene 15475 27503 1694.0 + 0 ENSG00000274480.1 protein_coding KIR3DL3 2 OTTHUMG00000188944.1 +4555 KI270923.1 HAVANA gene 45621 59989 1419.0 + 0 ENSG00000277725.5 protein_coding KIR2DL2 2 OTTHUMG00000188946.1 +4556 KI270923.1 HAVANA gene 29490 60215 2089.0 + 0 ENSG00000275452.2 protein_coding KIR2DS2 2 OTTHUMG00000188945.1 +4557 KI270923.1 HAVANA gene 62247 75651 1294.0 + 0 ENSG00000274610.1 protein_coding KIR3DP1 2 OTTHUMG00000188947.1 +4558 KI270923.1 HAVANA gene 80901 91882 1656.0 + 0 ENSG00000275237.4 protein_coding KIR2DL4 2 OTTHUMG00000188948.1 +4559 KI270923.1 HAVANA gene 93848 108144 1857.0 + 0 ENSG00000276423.6 protein_coding KIR3DL1 2 OTTHUMG00000188949.1 +4560 KI270923.1 HAVANA gene 110120 125517 1112.0 + 0 ENSG00000274714.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000188950.1 +4561 KI270923.1 HAVANA gene 127809 144581 1885.0 + 0 ENSG00000274722.4 protein_coding KIR3DL2 2 OTTHUMG00000188951.1 +4562 KI270923.1 ENSEMBL gene 146305 146411 107.0 - 0 ENSG00000273752.1 snRNA RF00026 3 +4563 KI270923.1 HAVANA gene 151615 167839 2366.0 + 0 ENSG00000275269.4 protein_coding FCAR 2 OTTHUMG00000188713.2 +4564 KI270923.1 HAVANA gene 183517 187432 985.0 + 0 ENSG00000277334.4 protein_coding NCR1 2 OTTHUMG00000188714.2 +4565 KI270924.1 HAVANA gene 3235 49270 20096.0 + 0 ENSG00000278468.3 protein_coding MUC4 2 OTTHUMG00000189776.1 +4566 KI270924.1 HAVANA gene 54921 75162 4249.0 - 0 ENSG00000278114.4 protein_coding MUC20 2 OTTHUMG00000189778.1 overlapping_locus +4567 KI270924.1 HAVANA gene 110140 137948 2001.0 - 0 ENSG00000281237.1 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000189780.1 overlapping_locus +4568 KI270924.1 HAVANA gene 56080 137982 17599.0 - 0 ENSG00000281794.2 lincRNA MUC20-OT1 2 OTTHUMG00000189777.1 overlapping_locus +4569 KI270924.1 HAVANA gene 138117 140479 1684.0 + 0 ENSG00000281094.1 lincRNA AC233280.9 2 OTTHUMG00000189782.1 +4570 KI270924.1 HAVANA gene 144572 145898 1070.0 + 0 ENSG00000281743.1 processed_pseudogene AC233280.15 2 OTTHUMG00000189783.1 +4571 KI270925.1 HAVANA gene 111108 113335 2228.0 + 0 ENSG00000281610.1 transcribed_processed_pseudogene HSP90AA4P 2 OTTHUMG00000190114.1 +4572 KI270925.1 HAVANA gene 307217 309097 879.0 + 0 ENSG00000280513.1 lincRNA LINC01262 2 OTTHUMG00000190115.1 +4573 KI270925.1 HAVANA gene 352610 353219 610.0 - 0 ENSG00000280853.1 lincRNA AF250324.3 2 OTTHUMG00000190116.1 +4574 KI270925.1 ENSEMBL gene 358268 358443 176.0 - 0 ENSG00000274208.1 snRNA RF00003 3 +4575 KI270925.1 HAVANA gene 530244 533597 592.0 + 0 ENSG00000281377.1 lincRNA LINC01596 2 OTTHUMG00000190118.1 +4576 KI270925.1 HAVANA gene 429065 544372 1655.0 - 0 ENSG00000281787.1 lincRNA FRG1-DT 2 OTTHUMG00000190117.1 +4577 KI270926.1 HAVANA gene 17751 35803 1829.0 - 0 ENSG00000282020.1 antisense AF188030.1 2 OTTHUMG00000190710.1 +4578 KI270926.1 HAVANA gene 40124 121138 9647.0 + 0 ENSG00000282318.1 protein_coding DLGAP2 2 OTTHUMG00000190711.1 +4579 KI270926.1 HAVANA gene 142866 144114 932.0 + 0 ENSG00000282786.1 processed_pseudogene AF188030.2 2 OTTHUMG00000190746.1 +4580 KI270926.1 HAVANA gene 170866 173105 2240.0 - 0 ENSG00000282493.1 lincRNA AC100810.5 2 OTTHUMG00000190713.1 +4581 KI270926.1 HAVANA gene 174648 177242 1491.0 - 0 ENSG00000282481.1 antisense AC100810.4 2 OTTHUMG00000190714.1 +4582 KI270926.1 HAVANA gene 168436 199228 8109.0 + 0 ENSG00000278220.2 protein_coding CLN8 2 OTTHUMG00000190712.3 +4583 KI270927.1 ENSEMBL gene 11164 11267 104.0 + 0 ENSG00000276186.1 snRNA RNU6-1025P 3 +4584 KI270927.1 HAVANA gene 3478 81830 9186.0 + 0 ENSG00000281385.2 protein_coding AP2A2 2 OTTHUMG00000189863.2 ncRNA_host +4585 KI270927.1 HAVANA gene 82412 111099 13231.0 - 0 ENSG00000277281.3 polymorphic_pseudogene MUC6 2 OTTHUMG00000189864.1 +4586 KI270927.1 HAVANA gene 124273 130142 3443.0 + 0 ENSG00000281524.1 lincRNA AC139749.2 2 OTTHUMG00000189865.1 +4587 KI270927.1 HAVANA gene 149268 178812 8637.0 + 0 ENSG00000278466.3 protein_coding MUC2 2 OTTHUMG00000189866.1 reference_genome_error +4588 KI270928.1 HAVANA gene 2036 6629 1731.0 + 0 ENSG00000274112.2 protein_coding SMDT1 2 OTTHUMG00000189875.1 +4589 KI270928.1 HAVANA gene 11975 12373 399.0 - 0 ENSG00000281542.1 sense_intronic AL021878.4 2 OTTHUMG00000189877.1 overlapping_locus +4590 KI270928.1 HAVANA gene 7870 13300 1416.0 - 0 ENSG00000277365.3 protein_coding NDUFA6 2 OTTHUMG00000189876.1 overlapping_locus +4591 KI270928.1 HAVANA gene 30110 31298 1189.0 - 0 ENSG00000278846.2 processed_pseudogene OLA1P1 2 OTTHUMG00000189879.1 +4592 KI270928.1 HAVANA gene 48840 53247 2386.0 - 0 ENSG00000275211.4 protein_coding CYP2D6 2 OTTHUMG00000189880.1 +4593 KI270928.1 HAVANA gene 13278 59398 4512.0 + 0 ENSG00000280811.2 processed_transcript NDUFA6-DT 2 OTTHUMG00000189878.1 overlapping_locus +4594 KI270928.1 HAVANA gene 60408 62076 631.0 + 0 ENSG00000280880.1 lincRNA BX247885.2 2 OTTHUMG00000189882.1 +4595 KI270928.1 HAVANA gene 58781 62277 667.0 - 0 ENSG00000280556.1 lincRNA BX247885.1 2 OTTHUMG00000189881.1 +4596 KI270928.1 HAVANA gene 62553 66917 2260.0 - 0 ENSG00000278088.4 polymorphic_pseudogene CYP2D7 2 OTTHUMG00000189883.1 +4597 KI270928.1 HAVANA gene 72216 77346 1488.0 - 0 ENSG00000273785.2 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000189884.1 +4598 KI270928.1 HAVANA gene 82358 137787 7410.0 - 0 ENSG00000276461.4 protein_coding TCF20 2 OTTHUMG00000189886.3 +4599 KI270929.1 HAVANA gene 230 10713 1604.0 + 0 ENSG00000275433.1 protein_coding KIR3DL3 2 OTTHUMG00000188776.1 +4600 KI270929.1 HAVANA gene 12714 27229 1566.0 + 0 ENSG00000273947.5 protein_coding KIR2DL3 2 OTTHUMG00000188777.1 +4601 KI270929.1 HAVANA gene 29200 41545 1049.0 + 0 ENSG00000278339.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188778.1 +4602 KI270929.1 HAVANA gene 44014 58500 1572.0 + 0 ENSG00000273510.1 protein_coding KIR2DL1 2 OTTHUMG00000188779.1 +4603 KI270929.1 HAVANA gene 60639 64494 879.0 + 0 ENSG00000277560.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188780.1 +4604 KI270929.1 HAVANA gene 77775 88724 1581.0 + 0 ENSG00000276779.1 protein_coding KIR2DL4 2 OTTHUMG00000188781.1 +4605 KI270929.1 HAVANA gene 90646 104989 1900.0 + 0 ENSG00000278079.6 protein_coding KIR3DL1 2 OTTHUMG00000188782.1 +4606 KI270929.1 HAVANA gene 106947 122800 1850.0 + 0 ENSG00000273526.1 protein_coding KIR2DS4 2 OTTHUMG00000188783.1 +4607 KI270929.1 HAVANA gene 124676 141434 1885.0 + 0 ENSG00000275416.4 protein_coding KIR3DL2 2 OTTHUMG00000188784.1 +4608 KI270929.1 ENSEMBL gene 143158 143264 107.0 - 0 ENSG00000278140.1 snRNA RF00026 3 +4609 KI270929.1 HAVANA gene 148466 165638 3314.0 + 0 ENSG00000273738.4 protein_coding FCAR 2 OTTHUMG00000188892.2 +4610 KI270929.1 HAVANA gene 180368 184283 985.0 + 0 ENSG00000275637.4 protein_coding NCR1 2 OTTHUMG00000188893.2 +4611 KI270930.1 ENSEMBL gene 12 118 107.0 + 0 ENSG00000276552.1 snRNA RF00026 3 +4612 KI270930.1 HAVANA gene 1842 18618 1885.0 - 0 ENSG00000278474.4 protein_coding KIR3DL2 2 OTTHUMG00000188826.1 +4613 KI270930.1 HAVANA gene 20493 36147 1563.0 - 0 ENSG00000277078.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000188827.1 +4614 KI270930.1 HAVANA gene 54368 65351 1656.0 - 0 ENSG00000276044.4 protein_coding KIR2DL4 2 OTTHUMG00000188829.1 +4615 KI270930.1 HAVANA gene 78566 84231 949.0 - 0 ENSG00000278345.1 unprocessed_pseudogene GU182343.4 2 OTTHUMG00000188830.1 +4616 KI270930.1 HAVANA gene 20590 84249 2827.0 - 0 ENSG00000275659.5 protein_coding KIR3DL1 2 OTTHUMG00000188828.1 +4617 KI270930.1 HAVANA gene 86264 100769 1585.0 - 0 ENSG00000275080.5 protein_coding KIR2DL1 2 OTTHUMG00000188831.1 +4618 KI270930.1 HAVANA gene 103224 115572 1048.0 - 0 ENSG00000275059.1 unprocessed_pseudogene GU182343.3 2 OTTHUMG00000188832.1 +4619 KI270930.1 HAVANA gene 117753 132611 1422.0 - 0 ENSG00000274563.1 protein_coding GU182343.1 2 OTTHUMG00000188833.1 +4620 KI270930.1 HAVANA gene 134455 144052 1632.0 - 0 ENSG00000274707.5 protein_coding GU182343.2 2 OTTHUMG00000188834.1 +4621 KI270930.1 HAVANA gene 146080 160620 1590.0 - 0 ENSG00000278369.1 protein_coding KIR2DL3 2 OTTHUMG00000188835.1 +4622 KI270930.1 HAVANA gene 162688 171541 1244.0 - 0 ENSG00000277596.1 protein_coding KIR3DL3 2 OTTHUMG00000188836.1 +4623 KI270930.1 HAVANA gene 185697 191234 2127.0 - 0 ENSG00000275289.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188894.1 +4624 KI270930.1 HAVANA gene 194915 195198 284.0 - 0 ENSG00000277940.1 unprocessed_pseudogene AC245128.14 2 OTTHUMG00000188895.1 +4625 KI270930.1 HAVANA gene 198245 198557 183.0 - 0 ENSG00000273881.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188896.1 +4626 KI270931.1 ENSEMBL gene 369 475 107.0 + 0 ENSG00000278190.1 snRNA RF00026 3 +4627 KI270931.1 HAVANA gene 2199 18974 1885.0 - 0 ENSG00000278850.4 protein_coding KIR3DL2 2 OTTHUMG00000188874.1 +4628 KI270931.1 HAVANA gene 21015 35831 1410.0 - 0 ENSG00000276395.1 protein_coding KIR2DS4 2 OTTHUMG00000188875.1 +4629 KI270931.1 HAVANA gene 37780 52083 1863.0 - 0 ENSG00000273775.5 protein_coding KIR3DL1 2 OTTHUMG00000188876.1 +4630 KI270931.1 HAVANA gene 54043 64992 1581.0 - 0 ENSG00000277362.1 protein_coding KIR2DL4 2 OTTHUMG00000188877.1 +4631 KI270931.1 HAVANA gene 78273 82128 879.0 - 0 ENSG00000278051.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188878.1 +4632 KI270931.1 HAVANA gene 84456 98777 1406.0 - 0 ENSG00000276310.1 protein_coding KIR2DL1 2 OTTHUMG00000188879.1 +4633 KI270931.1 HAVANA gene 101220 113601 1082.0 - 0 ENSG00000274912.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188839.2 +4634 KI270931.1 HAVANA gene 115535 130041 1585.0 - 0 ENSG00000276218.5 protein_coding KIR2DL3 2 OTTHUMG00000188840.1 +4635 KI270931.1 HAVANA gene 131931 144047 1833.0 - 0 ENSG00000273502.4 protein_coding KIR3DL3 2 OTTHUMG00000188841.1 +4636 KI270931.1 HAVANA gene 155072 160609 2127.0 - 0 ENSG00000274861.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188897.1 +4637 KI270931.1 HAVANA gene 164290 164573 284.0 - 0 ENSG00000276808.1 unprocessed_pseudogene AC245128.10 2 OTTHUMG00000188898.1 +4638 KI270931.1 HAVANA gene 167620 167932 183.0 - 0 ENSG00000274339.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188899.1 +4639 KI270932.1 ENSEMBL gene 347 453 107.0 + 0 ENSG00000277551.1 snRNA RF00026 3 +4640 KI270932.1 HAVANA gene 2177 18971 1885.0 - 0 ENSG00000276424.4 protein_coding KIR3DL2 2 OTTHUMG00000188968.1 +4641 KI270932.1 HAVANA gene 21127 36733 1322.0 - 0 ENSG00000277345.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000188969.1 +4642 KI270932.1 HAVANA gene 38631 52936 1865.0 - 0 ENSG00000276329.5 protein_coding KIR3DL1 2 OTTHUMG00000188970.1 +4643 KI270932.1 HAVANA gene 54893 65916 1657.0 - 0 ENSG00000274189.4 protein_coding KIR2DL4 2 OTTHUMG00000188971.1 +4644 KI270932.1 HAVANA gene 71155 83086 1332.0 - 0 ENSG00000277176.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000188972.1 +4645 KI270932.1 HAVANA gene 85340 99634 1372.0 - 0 ENSG00000278805.1 protein_coding KIR2DL1 2 OTTHUMG00000188973.1 +4646 KI270932.1 HAVANA gene 102079 114429 1049.0 - 0 ENSG00000277376.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000188974.1 +4647 KI270932.1 HAVANA gene 116914 131451 1120.0 - 0 ENSG00000276676.5 protein_coding GU182345.2 2 OTTHUMG00000188975.1 +4648 KI270932.1 HAVANA gene 133384 142868 1596.0 - 0 ENSG00000275946.5 protein_coding GU182345.1 2 OTTHUMG00000188976.1 +4649 KI270932.1 HAVANA gene 145060 159387 1371.0 - 0 ENSG00000275407.1 protein_coding KIR2DL2 2 OTTHUMG00000188977.1 +4650 KI270932.1 HAVANA gene 161634 175541 1169.0 - 0 ENSG00000276258.1 protein_coding KIR2DS2 2 OTTHUMG00000188978.1 +4651 KI270932.1 HAVANA gene 177975 189661 1314.0 - 0 ENSG00000274724.1 protein_coding KIR3DL3 2 OTTHUMG00000188979.1 +4652 KI270932.1 HAVANA gene 200768 206193 2014.0 - 0 ENSG00000273755.4 transcribed_unprocessed_pseudogene LILRP2 2 OTTHUMG00000188954.1 +4653 KI270932.1 HAVANA gene 213003 215732 468.0 - 0 ENSG00000277070.1 transcribed_unprocessed_pseudogene LILRP1 2 OTTHUMG00000188955.1 +4654 KI270933.1 ENSEMBL gene 12 118 107.0 + 0 ENSG00000275021.1 snRNA RF00026 3 +4655 KI270933.1 HAVANA gene 1850 18614 1877.0 - 0 ENSG00000276004.4 protein_coding KIR3DL2 2 OTTHUMG00000189004.1 +4656 KI270933.1 HAVANA gene 20758 36126 1256.0 - 0 ENSG00000274807.4 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000189005.2 +4657 KI270933.1 HAVANA gene 38147 52466 1860.0 - 0 ENSG00000274948.5 protein_coding KIR3DL1 2 OTTHUMG00000189006.1 +4658 KI270933.1 HAVANA gene 54387 65535 2169.0 - 0 ENSG00000273575.4 protein_coding KIR2DL4 2 OTTHUMG00000189007.1 +4659 KI270933.1 HAVANA gene 70619 82440 1223.0 - 0 ENSG00000278786.4 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000189008.1 overlapping_locus +4660 KI270933.1 HAVANA gene 84577 99089 1678.0 - 0 ENSG00000273794.4 protein_coding KIR2DL1 2 OTTHUMG00000189009.1 +4661 KI270933.1 HAVANA gene 101553 113927 1308.0 - 0 ENSG00000273955.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000189010.1 +4662 KI270933.1 HAVANA gene 115849 130400 1596.0 - 0 ENSG00000274830.5 protein_coding KIR2DL3 2 OTTHUMG00000189011.1 +4663 KI270933.1 HAVANA gene 132782 144467 1314.0 - 0 ENSG00000274556.1 protein_coding KIR3DL3 2 OTTHUMG00000189012.1 +4664 KI270933.1 HAVANA gene 155461 160998 2127.0 - 0 ENSG00000277963.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000188991.1 +4665 KI270933.1 HAVANA gene 164679 164962 284.0 - 0 ENSG00000276324.1 unprocessed_pseudogene AC245128.9 2 OTTHUMG00000188992.1 +4666 KI270933.1 HAVANA gene 168009 168321 183.0 - 0 ENSG00000277240.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000188993.1 +4667 KI270934.1 HAVANA gene 3235 47969 20098.0 + 0 ENSG00000278303.4 protein_coding MUC4 2 OTTHUMG00000189814.1 +4668 KI270934.1 HAVANA gene 53608 73318 3736.0 - 0 ENSG00000277753.3 protein_coding MUC20 2 OTTHUMG00000189802.1 overlapping_locus +4669 KI270934.1 HAVANA gene 107058 134866 2001.0 - 0 ENSG00000280521.1 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000189806.1 overlapping_locus +4670 KI270934.1 HAVANA gene 16220 134900 17603.0 - 0 ENSG00000281603.2 lincRNA MUC20-OT1 2 OTTHUMG00000189803.5 overlapping_locus +4671 KI270934.1 HAVANA gene 135035 137397 1684.0 + 0 ENSG00000280482.1 lincRNA AC233280.3 2 OTTHUMG00000189807.1 +4672 KI270934.1 HAVANA gene 141490 142816 1070.0 + 0 ENSG00000280865.1 processed_pseudogene AC233280.8 2 OTTHUMG00000189808.1 +4673 KI270934.1 HAVANA gene 152502 152972 471.0 - 0 ENSG00000281821.1 lincRNA AC233280.17 2 OTTHUMG00000189809.1 +4674 KI270935.1 HAVANA gene 20643 21969 1070.0 - 0 ENSG00000280506.1 processed_pseudogene AC233280.4 2 OTTHUMG00000189815.1 +4675 KI270935.1 HAVANA gene 26062 28424 1684.0 - 0 ENSG00000280631.1 lincRNA AC233280.6 2 OTTHUMG00000189816.1 +4676 KI270935.1 HAVANA gene 28593 56401 2001.0 + 0 ENSG00000280912.1 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000189818.1 overlapping_locus +4677 KI270935.1 HAVANA gene 28559 110461 17606.0 + 0 ENSG00000280512.2 lincRNA MUC20-OT1 2 OTTHUMG00000189817.5 overlapping_locus +4678 KI270935.1 HAVANA gene 91379 111620 4249.0 + 0 ENSG00000275501.4 protein_coding MUC20 2 OTTHUMG00000189821.1 overlapping_locus +4679 KI270935.1 HAVANA gene 117673 181676 16226.0 - 0 ENSG00000275164.3 unprocessed_pseudogene MUC4 2 OTTHUMG00000189822.1 +4680 KI270936.1 HAVANA gene 3235 47969 20098.0 + 0 ENSG00000273984.4 protein_coding MUC4 2 OTTHUMG00000189837.1 +4681 KI270936.1 HAVANA gene 53612 73313 3721.0 - 0 ENSG00000281630.2 protein_coding MUC20 2 OTTHUMG00000189833.1 overlapping_locus +4682 KI270936.1 HAVANA gene 107770 135578 2001.0 - 0 ENSG00000281418.1 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000189836.1 overlapping_locus +4683 KI270936.1 HAVANA gene 54771 135612 17570.0 - 0 ENSG00000281915.2 lincRNA MUC20-OT1 2 OTTHUMG00000189834.5 overlapping_locus +4684 KI270936.1 HAVANA gene 135747 138109 1684.0 + 0 ENSG00000281654.1 lincRNA AC233280.14 2 OTTHUMG00000189839.1 +4685 KI270936.1 HAVANA gene 142202 143528 1070.0 + 0 ENSG00000281583.1 processed_pseudogene AC233280.13 2 OTTHUMG00000189840.1 +4686 KI270937.1 HAVANA gene 3239 47971 20096.0 + 0 ENSG00000276613.4 protein_coding MUC4 2 OTTHUMG00000189849.1 +4687 KI270937.1 HAVANA gene 53724 73536 3777.0 - 0 ENSG00000275430.3 protein_coding MUC20 2 OTTHUMG00000189850.1 overlapping_locus +4688 KI270937.1 HAVANA gene 109207 137015 2001.0 - 0 ENSG00000281687.1 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000189854.1 overlapping_locus +4689 KI270937.1 HAVANA gene 54888 137049 17569.0 - 0 ENSG00000281060.2 lincRNA MUC20-OT1 2 OTTHUMG00000189851.5 overlapping_locus +4690 KI270937.1 HAVANA gene 137184 139546 1684.0 + 0 ENSG00000280748.1 lincRNA AC233280.7 2 OTTHUMG00000189855.1 +4691 KI270937.1 HAVANA gene 143639 144965 1070.0 + 0 ENSG00000281901.1 processed_pseudogene AC233280.18 2 OTTHUMG00000189856.1 +4692 KI270938.1 HAVANA gene 15196 38320 1352.0 - 0 ENSG00000275962.4 protein_coding VSTM1 2 OTTHUMG00000189016.1 +4693 KI270938.1 HAVANA gene 44262 55747 1293.0 - 0 ENSG00000276355.4 protein_coding TARM1 2 OTTHUMG00000189017.1 +4694 KI270938.1 HAVANA gene 69046 77113 2084.0 - 0 ENSG00000275736.4 protein_coding OSCAR 2 OTTHUMG00000189018.2 +4695 KI270938.1 HAVANA gene 77149 83146 2197.0 + 0 ENSG00000276061.4 protein_coding NDUFA3 2 OTTHUMG00000189019.2 +4696 KI270938.1 HAVANA gene 81433 90168 1240.0 - 0 ENSG00000276504.4 protein_coding TFPT 2 OTTHUMG00000189020.2 +4697 KI270938.1 HAVANA gene 94004 99835 4158.0 - 0 ENSG00000274041.1 antisense AC012314.5 2 OTTHUMG00000189105.1 +4698 KI270938.1 HAVANA gene 89903 106263 2670.0 + 0 ENSG00000275885.4 protein_coding PRPF31 2 OTTHUMG00000189021.3 +4699 KI270938.1 HAVANA gene 112557 130532 6697.0 + 0 ENSG00000277600.4 protein_coding CNOT3 2 OTTHUMG00000189022.3 +4700 KI270938.1 HAVANA gene 130490 134559 890.0 - 0 ENSG00000276959.1 protein_coding LENG1 2 OTTHUMG00000189023.1 +4701 KI270938.1 HAVANA gene 134959 148058 3022.0 - 0 ENSG00000273722.4 protein_coding TMC4 2 OTTHUMG00000189024.2 +4702 KI270938.1 HAVANA gene 148220 164780 5225.0 - 0 ENSG00000275118.4 protein_coding MBOAT7 2 OTTHUMG00000189025.3 +4703 KI270938.1 HAVANA gene 164903 168699 2717.0 + 0 ENSG00000278605.4 protein_coding TSEN34 2 OTTHUMG00000189026.3 +4704 KI270938.1 HAVANA gene 174435 174952 410.0 - 0 ENSG00000276287.1 lincRNA AC012314.24 2 OTTHUMG00000189029.1 +4705 KI270938.1 HAVANA gene 184074 184400 327.0 - 0 ENSG00000273655.1 unprocessed_pseudogene AC012314.2 2 OTTHUMG00000189031.1 +4706 KI270938.1 HAVANA gene 191638 198073 3794.0 - 0 ENSG00000274587.5 protein_coding LILRB3 2 OTTHUMG00000189032.3 +4707 KI270938.1 HAVANA gene 199509 199867 359.0 + 0 ENSG00000277190.1 lincRNA AC010492.3 2 OTTHUMG00000189033.1 overlapping_locus +4708 KI270938.1 HAVANA gene 204025 205202 901.0 + 0 ENSG00000274345.1 processed_pseudogene AC010492.1 2 OTTHUMG00000189034.1 overlapping_locus +4709 KI270938.1 HAVANA gene 211582 217825 3396.0 - 0 ENSG00000274148.5 protein_coding LILRA6 2 OTTHUMG00000189036.2 +4710 KI270938.1 HAVANA gene 221067 222295 219.0 - 0 ENSG00000277080.1 unprocessed_pseudogene AC010492.2 2 OTTHUMG00000189038.1 +4711 KI270938.1 HAVANA gene 175724 223976 4371.0 + 0 ENSG00000278270.4 protein_coding RPS9 2 OTTHUMG00000189030.1 overlapping_locus +4712 KI270938.1 HAVANA gene 225383 232281 6045.0 - 0 ENSG00000278437.4 protein_coding LILRB5 2 OTTHUMG00000189039.1 +4713 KI270938.1 ENSEMBL gene 238919 239021 103.0 - 0 ENSG00000275299.1 snRNA RF00026 3 +4714 KI270938.1 HAVANA gene 242973 244013 649.0 + 0 ENSG00000240042.2 processed_pseudogene AC098789.1 2 OTTHUMG00000189035.1 overlapping_locus +4715 KI270938.1 HAVANA gene 248789 256153 3648.0 - 0 ENSG00000275463.4 protein_coding LILRB2 2 OTTHUMG00000189040.2 +4716 KI270938.1 HAVANA gene 269016 269333 170.0 - 0 ENSG00000277961.1 unprocessed_pseudogene AC010518.1 2 OTTHUMG00000189069.1 +4717 KI270938.1 HAVANA gene 268758 275852 2155.0 - 0 ENSG00000275841.4 protein_coding LILRA3 2 OTTHUMG00000189070.2 +4718 KI270938.1 HAVANA gene 279828 280537 356.0 - 0 ENSG00000275951.1 unprocessed_pseudogene AC008984.3 2 OTTHUMG00000189071.1 +4719 KI270938.1 HAVANA gene 284161 288423 404.0 - 0 ENSG00000278402.1 unprocessed_pseudogene AC008984.5 2 OTTHUMG00000189072.1 +4720 KI270938.1 HAVANA gene 289467 295523 1762.0 - 0 ENSG00000274113.4 protein_coding LILRA5 2 OTTHUMG00000189073.1 overlapping_locus +4721 KI270938.1 HAVANA gene 302590 303603 1014.0 - 0 ENSG00000276466.1 transcribed_unprocessed_pseudogene AC008984.4 2 OTTHUMG00000189075.1 +4722 KI270938.1 HAVANA gene 310658 313820 1067.0 - 0 ENSG00000274785.1 transcribed_unprocessed_pseudogene AC008984.1 2 OTTHUMG00000189076.1 overlapping_locus +4723 KI270938.1 HAVANA gene 291296 319553 1738.0 - 0 ENSG00000275893.1 processed_transcript AC008984.2 2 OTTHUMG00000189074.1 overlapping_locus +4724 KI270938.1 HAVANA gene 315570 321535 2102.0 - 0 ENSG00000277092.4 protein_coding LILRA4 2 OTTHUMG00000189077.1 overlapping_locus +4725 KI270938.1 HAVANA gene 334105 353279 7948.0 - 0 ENSG00000276053.4 protein_coding LAIR1 2 OTTHUMG00000189078.2 +4726 KI270938.1 HAVANA gene 362207 362678 472.0 + 0 ENSG00000276551.1 processed_pseudogene AC008746.5 2 OTTHUMG00000189101.1 +4727 KI270938.1 HAVANA gene 412946 416992 529.0 - 0 ENSG00000275137.1 antisense AC008746.3 2 OTTHUMG00000189082.1 +4728 KI270938.1 HAVANA gene 397719 419194 6563.0 + 0 ENSG00000275650.4 protein_coding TTYH1 2 OTTHUMG00000189079.2 +4729 KI270938.1 HAVANA gene 420306 420642 337.0 - 0 ENSG00000274045.1 lincRNA AC008746.1 2 OTTHUMG00000189083.1 +4730 KI270938.1 HAVANA gene 420961 421840 880.0 - 0 ENSG00000275797.1 lincRNA AC008746.4 2 OTTHUMG00000189084.1 +4731 KI270938.1 HAVANA gene 427105 431337 1248.0 - 0 ENSG00000275470.4 antisense LENG8-AS1 2 OTTHUMG00000189085.1 +4732 KI270938.1 HAVANA gene 431179 444310 6379.0 + 0 ENSG00000276681.4 protein_coding LENG8 2 OTTHUMG00000189086.3 +4733 KI270938.1 HAVANA gene 444090 446008 1919.0 - 0 ENSG00000273574.1 protein_coding LENG9 2 OTTHUMG00000189087.1 +4734 KI270938.1 HAVANA gene 447324 455525 903.0 - 0 ENSG00000278444.1 protein_coding CDC42EP5 2 OTTHUMG00000189088.1 +4735 KI270938.1 HAVANA gene 480214 493011 1078.0 + 0 ENSG00000277335.4 protein_coding LAIR2 2 OTTHUMG00000189089.2 +4736 KI270938.1 HAVANA gene 504020 504328 309.0 + 0 ENSG00000274968.1 unprocessed_pseudogene AC008746.2 2 OTTHUMG00000189090.1 +4737 KI270938.1 HAVANA gene 515023 527780 4812.0 + 0 ENSG00000275918.4 protein_coding KIR3DX1 2 OTTHUMG00000189093.1 +4738 KI270938.1 HAVANA gene 534367 534653 287.0 + 0 ENSG00000276983.1 unprocessed_pseudogene AC009892.2 2 OTTHUMG00000189094.1 +4739 KI270938.1 HAVANA gene 555501 570141 2622.0 + 0 ENSG00000275290.4 protein_coding LILRA2 2 OTTHUMG00000189095.2 +4740 KI270938.1 HAVANA gene 572020 572866 847.0 + 0 ENSG00000275440.1 lincRNA AC009892.1 2 OTTHUMG00000189096.1 +4741 KI270938.1 HAVANA gene 576161 584669 3587.0 + 0 ENSG00000275525.5 protein_coding LILRA1 2 OTTHUMG00000189097.1 +4742 KI270938.1 HAVANA gene 590450 590956 316.0 + 0 ENSG00000278826.1 unprocessed_pseudogene AC009892.3 2 OTTHUMG00000189102.1 +4743 KI270938.1 HAVANA gene 613049 620134 4389.0 + 0 ENSG00000277134.5 protein_coding LILRB1 2 OTTHUMG00000189103.2 +4744 KI270938.1 HAVANA gene 618287 621457 554.0 - 0 ENSG00000275274.1 antisense LILRB1-AS1 2 OTTHUMG00000189098.1 +4745 KI270938.1 HAVANA gene 645385 652924 4583.0 + 0 ENSG00000275730.4 protein_coding LILRB4 2 OTTHUMG00000189041.2 overlapping_locus +4746 KI270938.1 HAVANA gene 653796 655156 579.0 + 0 ENSG00000275984.1 unprocessed_pseudogene AC011515.1 2 OTTHUMG00000189042.1 +4747 KI270938.1 HAVANA gene 679497 683797 1370.0 + 0 ENSG00000274881.1 unprocessed_pseudogene LILRP1 2 OTTHUMG00000189043.1 +4748 KI270938.1 HAVANA gene 686844 687127 284.0 + 0 ENSG00000274517.1 unprocessed_pseudogene AC098784.1 2 OTTHUMG00000189044.1 +4749 KI270938.1 HAVANA gene 690814 696068 2126.0 + 0 ENSG00000273864.4 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000189045.1 +4750 KI270938.1 HAVANA gene 707066 718708 1314.0 + 0 ENSG00000276196.1 protein_coding KIR3DL3 2 OTTHUMG00000189046.1 +4751 KI270938.1 HAVANA gene 721088 735618 1596.0 + 0 ENSG00000274410.5 protein_coding KIR2DL3 2 OTTHUMG00000189047.1 +4752 KI270938.1 HAVANA gene 737589 749937 1049.0 + 0 ENSG00000276503.1 transcribed_processed_pseudogene KIR2DP1 2 OTTHUMG00000189048.1 +4753 KI270938.1 HAVANA gene 752380 766701 1406.0 + 0 ENSG00000278503.1 protein_coding KIR2DL1 2 OTTHUMG00000189049.1 +4754 KI270938.1 HAVANA gene 768921 772884 655.0 + 0 ENSG00000276041.1 unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000189050.1 +4755 KI270938.1 HAVANA gene 786104 797086 1657.0 + 0 ENSG00000274232.4 protein_coding KIR2DL4 2 OTTHUMG00000189051.1 +4756 KI270938.1 HAVANA gene 799043 813347 1865.0 + 0 ENSG00000274036.5 protein_coding KIR3DL1 2 OTTHUMG00000189052.1 +4757 KI270938.1 HAVANA gene 815245 830852 1322.0 + 0 ENSG00000273931.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000189053.1 +4758 KI270938.1 HAVANA gene 833012 849784 1885.0 + 0 ENSG00000277181.4 protein_coding KIR3DL2 2 OTTHUMG00000189054.1 +4759 KI270938.1 ENSEMBL gene 851508 851614 107.0 - 0 ENSG00000273938.1 snRNA RF00026 3 +4760 KI270938.1 HAVANA gene 856818 873900 3314.0 + 0 ENSG00000274580.4 protein_coding FCAR 2 OTTHUMG00000189055.2 +4761 KI270938.1 HAVANA gene 888622 898622 1893.0 + 0 ENSG00000275156.4 protein_coding NCR1 2 OTTHUMG00000189056.2 +4762 KI270938.1 HAVANA gene 905991 948794 3914.0 - 0 ENSG00000274571.4 protein_coding NLRP7 2 OTTHUMG00000189057.3 +4763 KI270938.1 HAVANA gene 935612 983624 6313.0 + 0 ENSG00000273992.4 protein_coding NLRP2 2 OTTHUMG00000189058.2 overlapping_locus +4764 KI270938.1 HAVANA gene 996187 1020746 2703.0 - 0 ENSG00000277439.4 protein_coding GP6 2 OTTHUMG00000189059.2 overlapping_locus +4765 KI270938.1 HAVANA gene 1010075 1036410 1271.0 - 0 ENSG00000274413.1 processed_transcript AC011476.7 2 OTTHUMG00000189060.1 overlapping_locus +4766 KI270938.1 HAVANA gene 1021590 1053773 8575.0 - 0 ENSG00000276684.4 protein_coding RDH13 2 OTTHUMG00000189061.2 overlapping_locus +4767 KN196472.1 HAVANA gene 14223 14535 313.0 - 0 ENSG00000281764.1 processed_pseudogene AC093151.4 2 OTTHUMG00000005711.2 +4768 KN196472.1 HAVANA gene 124733 125374 394.0 - 0 ENSG00000281876.1 antisense FO681542.1 2 OTTHUMG00000005714.1 +4769 KN196472.1 ENSEMBL gene 111333 133487 2861.0 + 0 ENSG00000281518.6 protein_coding FOXO6 3 +4770 KN196473.1 HAVANA gene 6972 7868 897.0 - 0 ENSG00000281316.1 processed_pseudogene DPPA2P2 2 OTTHUMG00000003551.1 +4771 KN196473.1 ENSEMBL gene 42160 42211 52.0 + 0 ENSG00000280948.1 miRNA MIR1976 3 +4772 KN196473.1 HAVANA gene 17379 62648 5884.0 + 0 ENSG00000281877.2 protein_coding RPS6KA1 2 OTTHUMG00000004003.5 ncRNA_host +4773 KN196473.1 ENSEMBL gene 80861 81164 304.0 - 0 ENSG00000281092.1 misc_RNA RN7SL679P 3 +4774 KN196473.1 ENSEMBL gene 81558 81659 102.0 - 0 ENSG00000280876.1 misc_RNA RF00019 3 +4775 KN196473.1 ENSEMBL gene 89987 90050 64.0 - 0 ENSG00000281679.1 snRNA RNU7-29P 3 +4776 KN196473.1 HAVANA gene 127995 128232 238.0 - 0 ENSG00000280806.1 processed_pseudogene AL627313.2 2 OTTHUMG00000057505.2 +4777 KN196473.1 ENSEMBL gene 133289 133392 104.0 + 0 ENSG00000280926.1 snoRNA RF01210 3 +4778 KN196473.1 HAVANA gene 135065 135299 235.0 + 0 ENSG00000281805.1 processed_pseudogene AL627082.2 2 OTTHUMG00000057507.2 +4779 KN196474.1 HAVANA gene 14002 14916 915.0 + 0 ENSG00000280751.1 processed_pseudogene AKR7A2P1 2 OTTHUMG00000012135.3 +4780 KN196474.1 ENSEMBL gene 47180 47331 150.0 + 0 ENSG00000284271.1 pseudogene AL158844.1 3 +4781 KN196474.1 HAVANA gene 2426 47592 5312.0 - 0 ENSG00000281917.2 protein_coding SLC16A1 2 OTTHUMG00000012129.2 +4782 KN196475.1 HAVANA gene 20201 35990 4480.0 - 0 ENSG00000281626.4 protein_coding ZNF852 2 OTTHUMG00000156453.4 +4783 KN196475.1 HAVANA gene 50098 51159 1062.0 - 0 ENSG00000280781.1 processed_pseudogene EI24P3 2 OTTHUMG00000156451.1 +4784 KN196475.1 HAVANA gene 54309 54745 437.0 - 0 ENSG00000281707.1 processed_pseudogene AC099669.2 2 OTTHUMG00000187588.1 +4785 KN196475.1 HAVANA gene 105292 106380 1089.0 - 0 ENSG00000280795.1 processed_pseudogene MPRIPP1 2 OTTHUMG00000156454.1 overlapping_locus +4786 KN196475.1 HAVANA gene 80547 119527 4208.0 + 0 ENSG00000281894.2 protein_coding ZKSCAN7 2 OTTHUMG00000186378.1 overlapping_locus +4787 KN196475.1 HAVANA gene 103577 125048 6513.0 + 0 ENSG00000280661.2 protein_coding ZNF660 2 OTTHUMG00000133097.6 overlapping_locus +4788 KN196475.1 HAVANA gene 142482 150151 623.0 - 0 ENSG00000280907.1 antisense ZNF197-AS1 2 OTTHUMG00000156308.2 overlapping_locus +4789 KN196475.1 HAVANA gene 110242 173825 6767.0 + 0 ENSG00000281709.2 protein_coding ZNF197 2 OTTHUMG00000133089.6 overlapping_locus +4790 KN196475.1 HAVANA gene 174081 186145 2663.0 + 0 ENSG00000281306.2 protein_coding ZNF35 2 OTTHUMG00000133091.12 +4791 KN196475.1 HAVANA gene 192766 194718 1953.0 + 0 ENSG00000281102.1 lincRNA AC092046.1 2 OTTHUMG00000185519.1 +4792 KN196475.1 HAVANA gene 82711 211007 456.0 - 0 ENSG00000281456.1 antisense ZKSCAN7-AS1 2 OTTHUMG00000156455.2 overlapping_locus +4793 KN196475.1 HAVANA gene 234661 236236 1576.0 - 0 ENSG00000280872.1 processed_pseudogene SOCS5P3 2 OTTHUMG00000156450.1 +4794 KN196475.1 HAVANA gene 237993 249181 3273.0 + 0 ENSG00000281448.2 protein_coding ZNF502 2 OTTHUMG00000133086.5 +4795 KN196475.1 HAVANA gene 254946 262433 3910.0 + 0 ENSG00000281661.2 protein_coding ZNF501 2 OTTHUMG00000133048.4 +4796 KN196475.1 HAVANA gene 263011 287012 5259.0 - 0 ENSG00000281665.1 protein_coding KIAA1143 2 OTTHUMG00000133088.3 +4797 KN196475.1 ENSEMBL gene 387238 387331 94.0 + 0 ENSG00000284275.1 miRNA MIR564 3 +4798 KN196475.1 HAVANA gene 387219 391020 3106.0 + 0 ENSG00000280516.3 protein_coding TMEM42 2 OTTHUMG00000133092.2 ncRNA_host,overlapping_locus +4799 KN196475.1 HAVANA gene 287067 398726 5285.0 + 0 ENSG00000280610.2 protein_coding KIF15 2 OTTHUMG00000156307.7 ncRNA_host,overlapping_locus +4800 KN196475.1 HAVANA gene 424528 426275 569.0 + 0 ENSG00000280701.1 antisense AC098649.2 2 OTTHUMG00000156317.1 overlapping_locus +4801 KN196475.1 HAVANA gene 399958 440340 5443.0 + 0 ENSG00000281886.2 protein_coding TGM4 2 OTTHUMG00000133096.4 overlapping_locus +4802 KN196476.1 ENSEMBL gene 109155 109314 160.0 + 0 ENSG00000283272.1 sRNA RF01699 3 +4803 KN196476.1 HAVANA gene 126609 266435 838.0 - 0 ENSG00000283276.1 unprocessed_pseudogene ABBA01000935.1 2 OTTHUMG00000191870.1 +4804 KN196477.1 HAVANA gene 98374 98514 141.0 + 0 ENSG00000281198.1 processed_pseudogene AC208067.1 2 OTTHUMG00000161951.1 +4805 KN196478.1 ENSEMBL gene 13186 13289 104.0 + 0 ENSG00000252303.2 snRNA RNU6-280P 3 +4806 KN196478.1 ENSEMBL gene 97554 97662 109.0 + 0 ENSG00000281771.1 misc_RNA RF00019 3 +4807 KN196479.1 HAVANA gene 31223 35196 1135.0 - 0 ENSG00000280584.2 protein_coding OBP2B 2 OTTHUMG00000020860.4 +4808 KN196479.1 HAVANA gene 50851 54537 505.0 - 0 ENSG00000280820.1 unprocessed_pseudogene LCN1P1 2 OTTHUMG00000020859.2 +4809 KN196479.1 ENSEMBL gene 81269 101308 1580.0 - 0 ENSG00000281879.3 protein_coding ABO 3 +4810 KN196479.1 ENSEMBL gene 128564 128657 94.0 + 0 ENSG00000280632.1 misc_RNA RF00019 3 +4811 KN196479.1 HAVANA gene 143888 144563 223.0 + 0 ENSG00000281430.1 unprocessed_pseudogene LCN1P2 2 OTTHUMG00000020863.2 +4812 KN196479.1 HAVANA gene 154868 162492 4626.0 - 0 ENSG00000281309.1 protein_coding SURF6 2 OTTHUMG00000020871.3 +4813 KN196479.1 ENSEMBL gene 163822 163918 97.0 - 0 ENSG00000281393.1 misc_RNA RF00019 3 +4814 KN196479.1 HAVANA gene 165084 165559 476.0 + 0 ENSG00000281699.1 processed_pseudogene AL772161.2 2 OTTHUMG00000020861.2 +4815 KN196479.1 HAVANA gene 164417 174225 7224.0 - 0 ENSG00000281022.2 protein_coding MED22 2 OTTHUMG00000020869.11 +4816 KN196479.1 ENSEMBL gene 175490 175564 75.0 + 0 ENSG00000280889.1 snoRNA SNORD24 3 +4817 KN196479.1 ENSEMBL gene 176189 176262 74.0 + 0 ENSG00000281243.1 snoRNA SNORD36B 3 +4818 KN196479.1 ENSEMBL gene 176550 176622 73.0 + 0 ENSG00000281907.1 snoRNA SNORD36A 3 +4819 KN196479.1 ENSEMBL gene 176941 177006 66.0 + 0 ENSG00000281541.1 snoRNA SNORD36C 3 +4820 KN196479.1 ENSEMBL gene 176775 177487 249.0 - 0 ENSG00000283984.2 protein_coding AL593848.2 3 +4821 KN196479.1 HAVANA gene 174308 177520 2242.0 + 0 ENSG00000280858.2 protein_coding RPL7A 2 OTTHUMG00000020864.2 ncRNA_host +4822 KN196479.1 HAVANA gene 177849 182770 1761.0 - 0 ENSG00000280627.2 protein_coding SURF1 2 OTTHUMG00000020866.5 +4823 KN196479.1 HAVANA gene 182646 187263 1008.0 + 0 ENSG00000281024.2 protein_coding SURF2 2 OTTHUMG00000020867.2 +4824 KN196479.1 HAVANA gene 187543 202260 3446.0 - 0 ENSG00000280951.2 protein_coding SURF4 2 OTTHUMG00000020868.2 +4825 KN196479.1 ENSEMBL gene 217408 217784 375.0 - 0 ENSG00000283909.1 pseudogene AL593848.1 3 +4826 KN196479.1 HAVANA gene 202461 232190 4408.0 + 0 ENSG00000281245.1 protein_coding STKLD1 2 OTTHUMG00000020862.2 +4827 KN196479.1 HAVANA gene 232153 244190 2654.0 - 0 ENSG00000280706.2 protein_coding REXO4 2 OTTHUMG00000020870.7 +4828 KN196479.1 HAVANA gene 240452 285496 5708.0 + 0 ENSG00000281244.2 protein_coding ADAMTS13 2 OTTHUMG00000020876.4 +4829 KN196479.1 HAVANA gene 286059 296942 3520.0 + 0 ENSG00000280479.2 protein_coding CACFD1 2 OTTHUMG00000020875.2 +4830 KN196479.1 HAVANA gene 297189 305231 3540.0 - 0 ENSG00000281165.2 protein_coding SLC2A6 2 OTTHUMG00000020874.3 +4831 KN196480.1 HAVANA gene 26286 26806 521.0 - 0 ENSG00000281256.1 lincRNA AL360225.1 2 OTTHUMG00000186424.1 +4832 KN196480.1 HAVANA gene 228151 228927 380.0 - 0 ENSG00000281086.1 antisense AC018511.3 2 OTTHUMG00000018511.1 overlapping_locus +4833 KN196480.1 HAVANA gene 207731 229850 189.0 - 0 ENSG00000281770.1 antisense AC018511.4 2 OTTHUMG00000018510.1 overlapping_locus +4834 KN196480.1 HAVANA gene 29603 237300 32495.0 + 0 ENSG00000281813.3 protein_coding KAT6B 2 OTTHUMG00000018509.8 +4835 KN196480.1 HAVANA gene 246552 260430 2337.0 + 0 ENSG00000285951.1 antisense AC018511.6 2 OTTHUMG00000192784.1 +4836 KN196480.1 HAVANA gene 242512 263190 663.0 - 0 ENSG00000281660.1 protein_coding DUPD1 2 OTTHUMG00000018512.3 +4837 KN196481.1 ENSEMBL gene 15934 16230 297.0 + 0 ENSG00000281029.1 misc_RNA RF00017 3 +4838 KN196481.1 ENSEMBL gene 16160 16255 96.0 + 0 ENSG00000283318.1 misc_RNA RF00019 3 +4839 KN196481.1 HAVANA gene 16424 19604 1506.0 - 0 ENSG00000281705.1 lincRNA AP003392.11 2 OTTHUMG00000166415.2 +4840 KN196481.1 HAVANA gene 24612 25046 435.0 - 0 ENSG00000281913.1 processed_pseudogene RPL23AP64 2 OTTHUMG00000158473.1 +4841 KN196481.1 HAVANA gene 25342 26493 523.0 - 0 ENSG00000280582.1 antisense AP003392.7 2 OTTHUMG00000166416.1 +4842 KN196481.1 HAVANA gene 27327 27534 208.0 - 0 ENSG00000281697.1 processed_pseudogene AP003392.10 2 OTTHUMG00000166349.1 +4843 KN196481.1 HAVANA gene 19742 37391 5105.0 + 0 ENSG00000280975.2 protein_coding CCDC84 2 OTTHUMG00000166348.3 +4844 KN196481.1 HAVANA gene 37312 40291 1477.0 - 0 ENSG00000280831.2 protein_coding RPS25 2 OTTHUMG00000166350.1 +4845 KN196481.1 ENSEMBL gene 40544 40612 69.0 + 0 ENSG00000284577.1 miRNA MIR3656 3 +4846 KN196481.1 HAVANA gene 40032 47054 5140.0 + 0 ENSG00000280495.4 protein_coding TRAPPC4 2 OTTHUMG00000166351.1 ncRNA_host +4847 KN196481.1 ENSEMBL gene 45953 52505 2604.0 - 0 ENSG00000281500.2 protein_coding SLC37A4 3 +4848 KN196481.1 HAVANA gene 65787 67092 667.0 + 0 ENSG00000281860.1 antisense AP003392.12 2 OTTHUMG00000166353.1 +4849 KN196481.1 HAVANA gene 65788 78801 7694.0 - 0 ENSG00000280682.2 protein_coding HYOU1 2 OTTHUMG00000166354.9 +4850 KN196481.1 HAVANA gene 86862 87276 415.0 - 0 ENSG00000281163.1 lincRNA AP003392.9 2 OTTHUMG00000185714.1 +4851 KN196481.1 HAVANA gene 88973 89297 325.0 - 0 ENSG00000280967.1 antisense AP003392.8 2 OTTHUMG00000185715.1 +4852 KN196481.1 HAVANA gene 89291 103577 5907.0 + 0 ENSG00000280616.2 protein_coding VPS11 2 OTTHUMG00000166355.6 +4853 KN196484.1 HAVANA gene 36471 46043 748.0 + 0 ENSG00000280774.2 protein_coding LEUTX 2 OTTHUMG00000170877.5 +4854 KN196484.1 HAVANA gene 72848 73431 584.0 - 0 ENSG00000281677.1 lincRNA AC005393.2 2 OTTHUMG00000186731.2 +4855 KN196484.1 ENSEMBL gene 89592 89678 87.0 - 0 ENSG00000281403.1 miRNA MIR6719 3 +4856 KN196484.1 HAVANA gene 85226 94077 3192.0 - 0 ENSG00000281320.2 protein_coding DYRK1B 2 OTTHUMG00000182584.5 ncRNA_host +4857 KN196484.1 HAVANA gene 94334 106290 2173.0 - 0 ENSG00000280548.3 protein_coding FBL 2 OTTHUMG00000182581.7 +4858 KN196484.1 ENSEMBL gene 123200 209769 16389.0 - 0 ENSG00000281123.3 protein_coding FCGBP 3 +4859 KN196484.1 HAVANA gene 218382 218823 442.0 - 0 ENSG00000280932.1 processed_pseudogene PRR13P5 2 OTTHUMG00000182585.1 +4860 KN196484.1 HAVANA gene 246148 256584 2387.0 + 0 ENSG00000281221.2 protein_coding PSMC4 2 OTTHUMG00000182577.2 +4861 KN196484.1 HAVANA gene 259277 296184 9007.0 + 0 ENSG00000281526.2 protein_coding ZNF546 2 OTTHUMG00000182578.8 +4862 KN196484.1 HAVANA gene 298527 300645 2039.0 - 0 ENSG00000281233.1 processed_pseudogene AC007842.2 2 OTTHUMG00000182630.1 +4863 KN196484.1 HAVANA gene 303403 331352 9217.0 - 0 ENSG00000281601.2 protein_coding ZNF780B 2 OTTHUMG00000155118.4 overlapping_locus +4864 KN196484.1 HAVANA gene 323900 366068 461.0 - 0 ENSG00000281009.1 processed_transcript AC005614.4 2 OTTHUMG00000182662.2 overlapping_locus +4865 KN196484.1 HAVANA gene 344295 366081 7972.0 - 0 ENSG00000280568.2 protein_coding ZNF780A 2 OTTHUMG00000155119.5 overlapping_locus +4866 KN196484.1 HAVANA gene 365897 369549 3653.0 + 0 ENSG00000280797.1 antisense AC005614.3 2 OTTHUMG00000182660.1 +4867 KN196485.1 HAVANA gene 4591 4989 399.0 - 0 ENSG00000281750.1 sense_intronic AC213220.2 2 OTTHUMG00000184054.1 overlapping_locus +4868 KN196485.1 HAVANA gene 476 5916 1416.0 - 0 ENSG00000281013.3 protein_coding NDUFA6 2 OTTHUMG00000151287.5 overlapping_locus +4869 KN196485.1 HAVANA gene 22727 23915 1189.0 - 0 ENSG00000280714.1 processed_pseudogene OLA1P1 2 OTTHUMG00000151284.1 +4870 KN196485.1 HAVANA gene 40870 42536 631.0 + 0 ENSG00000281908.1 lincRNA AC213220.3 2 OTTHUMG00000150921.10 +4871 KN196485.1 HAVANA gene 39243 42737 667.0 - 0 ENSG00000280705.1 lincRNA AC213220.1 2 OTTHUMG00000189689.8 +4872 KN196485.1 ENSEMBL gene 44407 46383 540.0 - 0 ENSG00000281757.5 protein_coding AC254560.1 3 +4873 KN196485.1 HAVANA gene 52675 57805 1490.0 - 0 ENSG00000281004.1 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000150922.2 +4874 KN196486.1 HAVANA gene 12065 16472 2443.0 - 0 ENSG00000280905.3 protein_coding CYP2D6 2 OTTHUMG00000150918.5 +4875 KN196486.1 HAVANA gene 31821 32276 456.0 + 0 ENSG00000281387.3 processed_pseudogene AC208162.1 2 OTTHUMG00000155612.2 overlapping_locus +4876 KN196486.1 HAVANA gene 37340 39008 631.0 + 0 ENSG00000284297.2 lincRNA AC208162.3 2 OTTHUMG00000150921.10 +4877 KN196486.1 HAVANA gene 35713 39209 667.0 - 0 ENSG00000284131.2 lincRNA AC208162.2 2 OTTHUMG00000189689.8 +4878 KN196486.1 ENSEMBL gene 40878 42854 540.0 - 0 ENSG00000283804.2 protein_coding AC254995.1 3 +4879 KN196486.1 HAVANA gene 49175 54290 1490.0 - 0 ENSG00000281436.1 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000150922.2 +4880 KN196487.1 HAVANA gene 68492 68736 245.0 + 0 ENSG00000281211.1 processed_pseudogene CTBP2P1 2 OTTHUMG00000036770.1 +4881 KN538360.1 HAVANA gene 11198 13789 1004.0 - 0 ENSG00000280963.2 antisense SERTAD4-AS1 2 OTTHUMG00000036392.2 +4882 KN538360.1 HAVANA gene 12541 26373 5467.0 + 0 ENSG00000281230.2 protein_coding SERTAD4 2 OTTHUMG00000036391.1 +4883 KN538360.1 HAVANA gene 45378 46983 1124.0 - 0 ENSG00000281067.1 processed_pseudogene ST13P19 2 OTTHUMG00000036393.3 +4884 KN538360.1 HAVANA gene 83426 84282 857.0 + 0 ENSG00000281552.1 processed_pseudogene AL035414.2 2 OTTHUMG00000036448.2 +4885 KN538360.1 ENSEMBL gene 153896 154009 114.0 - 0 ENSG00000281499.1 snRNA RNU5A-8P 3 +4886 KN538360.1 HAVANA gene 242087 242754 668.0 - 0 ENSG00000280937.1 processed_pseudogene AL034351.2 2 OTTHUMG00000184470.1 +4887 KN538360.1 HAVANA gene 107994 459395 6641.0 + 0 ENSG00000280680.2 protein_coding HHAT 2 OTTHUMG00000036447.3 +4888 KN538361.1 HAVANA gene 32297 40131 4676.0 + 0 ENSG00000281226.2 lincRNA AL590644.2 2 OTTHUMG00000002291.2 +4889 KN538361.1 HAVANA gene 35746 44247 1228.0 - 0 ENSG00000283081.1 lincRNA AL590644.4 2 OTTHUMG00000191586.1 +4890 KN538361.1 HAVANA gene 47640 88519 4903.0 + 0 ENSG00000281459.2 protein_coding PADI1 2 OTTHUMG00000002294.4 +4891 KN538361.1 ENSEMBL gene 120403 120489 87.0 + 0 ENSG00000281810.1 miRNA MIR3972 3 +4892 KN538361.1 HAVANA gene 91612 126747 3189.0 + 0 ENSG00000280549.1 protein_coding PADI3 2 OTTHUMG00000002373.1 ncRNA_host +4893 KN538361.1 HAVANA gene 153419 209227 2971.0 + 0 ENSG00000280908.2 protein_coding PADI4 2 OTTHUMG00000002371.1 +4894 KN538361.1 HAVANA gene 217419 246922 2396.0 + 0 ENSG00000280949.1 protein_coding PADI6 2 OTTHUMG00000002372.7 reference_genome_error +4895 KN538361.1 HAVANA gene 251983 252605 311.0 + 0 ENSG00000281391.1 antisense AC004824.2 2 OTTHUMG00000037449.1 +4896 KN538361.1 HAVANA gene 251983 284947 4126.0 - 0 ENSG00000281540.2 protein_coding RCC2 2 OTTHUMG00000002513.1 +4897 KN538362.1 HAVANA gene 38053 38635 583.0 + 0 ENSG00000280792.1 lincRNA AC093802.3 2 OTTHUMG00000176304.1 +4898 KN538362.1 HAVANA gene 65957 105980 3238.0 + 0 ENSG00000281384.1 lincRNA AC093802.4 2 OTTHUMG00000152415.1 +4899 KN538363.1 ENSEMBL gene 150537 150817 281.0 + 0 ENSG00000280669.1 misc_RNA RN7SL32P 3 +4900 KN538363.1 HAVANA gene 5305 153241 8681.0 + 0 ENSG00000281614.2 protein_coding INPP5D 2 OTTHUMG00000133688.6 ncRNA_host +4901 KN538363.1 ENSEMBL gene 221065 221340 276.0 + 0 ENSG00000280652.1 scaRNA SCARNA5 3 +4902 KN538363.1 ENSEMBL gene 234014 234278 265.0 + 0 ENSG00000281388.1 scaRNA SCARNA6 3 +4903 KN538363.1 HAVANA gene 155389 241012 6047.0 + 0 ENSG00000281089.2 protein_coding ATG16L1 2 OTTHUMG00000133619.6 ncRNA_host +4904 KN538363.1 HAVANA gene 253154 292393 11885.0 + 0 ENSG00000281857.2 protein_coding SAG 2 OTTHUMG00000153213.3 +4905 KN538363.1 HAVANA gene 296470 298754 2285.0 - 0 ENSG00000280928.1 antisense AC013726.2 2 OTTHUMG00000176291.1 +4906 KN538363.1 ENSEMBL gene 325181 325293 113.0 - 0 ENSG00000281623.1 misc_RNA RF00019 3 +4907 KN538364.1 ENSEMBL gene 52966 121861 684.0 - 0 ENSG00000281766.3 protein_coding RYBP 3 +4908 KN538364.1 HAVANA gene 179635 225449 866.0 - 0 ENSG00000280864.1 lincRNA AC255560.1 2 OTTHUMG00000159191.1 +4909 KN538364.1 ENSEMBL gene 251600 251763 164.0 + 0 ENSG00000281822.1 snRNA RNU1-62P 3 +4910 KN538364.1 HAVANA gene 258279 258444 166.0 + 0 ENSG00000280505.1 processed_pseudogene AC097369.1 2 OTTHUMG00000158824.1 +4911 KN538364.1 ENSEMBL gene 366614 366720 107.0 - 0 ENSG00000280775.1 rRNA_pseudogene RNA5SP136 3 +4912 KN538368.1 HAVANA gene 4565 5275 711.0 + 0 ENSG00000281118.1 processed_pseudogene AC044810.4 2 OTTHUMG00000158302.1 +4913 KN538368.1 ENSEMBL gene 5054 5302 249.0 - 0 ENSG00000284476.2 protein_coding AC044810.8 3 +4914 KN538368.1 HAVANA gene 16773 17841 1069.0 - 0 ENSG00000280931.1 protein_coding OR5P2 2 OTTHUMG00000165668.1 +4915 KN538368.1 HAVANA gene 55808 61828 1193.0 - 0 ENSG00000280808.2 protein_coding OR5P3 2 OTTHUMG00000165669.3 +4916 KN538368.1 HAVANA gene 79694 80620 927.0 + 0 ENSG00000281056.1 unprocessed_pseudogene OR5E1P 2 OTTHUMG00000154333.1 +4917 KN538368.1 ENSEMBL gene 120176 120273 98.0 - 0 ENSG00000281563.1 snRNA RNU6-943P 3 +4918 KN538368.1 ENSEMBL gene 152124 152853 729.0 - 0 ENSG00000284597.1 pseudogene AC044810.9 3 +4919 KN538368.1 HAVANA gene 155586 162262 6104.0 - 0 ENSG00000280899.3 protein_coding OR10A6 2 OTTHUMG00000165671.2 +4920 KN538368.1 HAVANA gene 168165 172702 2650.0 - 0 ENSG00000281680.2 protein_coding OR10A3 2 OTTHUMG00000165672.2 +4921 KN538368.1 HAVANA gene 190418 196420 2531.0 - 0 ENSG00000281166.1 protein_coding NLRP10 2 OTTHUMG00000165673.3 +4922 KN538369.1 HAVANA gene 80161 80487 327.0 + 0 ENSG00000281442.1 processed_pseudogene AC007537.4 2 OTTHUMG00000168539.1 overlapping_locus +4923 KN538369.1 ENSEMBL gene 80950 81034 85.0 + 0 ENSG00000283344.1 miRNA MIR1244-4 3 +4924 KN538369.1 HAVANA gene 124260 124770 511.0 + 0 ENSG00000280475.1 processed_pseudogene AC007537.3 2 OTTHUMG00000157455.2 overlapping_locus +4925 KN538369.1 ENSEMBL gene 168639 169835 789.0 - 0 ENSG00000284335.2 protein_coding AC007537.5 3 +4926 KN538369.1 HAVANA gene 18842 180082 5112.0 + 0 ENSG00000281449.2 protein_coding BCL2L14 2 OTTHUMG00000159528.5 ncRNA_host,overlapping_locus +4927 KN538369.1 ENSEMBL gene 195672 195775 104.0 + 0 ENSG00000206783.2 snRNA RNU6-545P 3 +4928 KN538369.1 HAVANA gene 217989 218425 437.0 + 0 ENSG00000281874.1 processed_pseudogene AC007621.2 2 OTTHUMG00000184767.1 +4929 KN538369.1 HAVANA gene 85023 236010 10337.0 - 0 ENSG00000281324.2 protein_coding LRP6 2 OTTHUMG00000168540.2 +4930 KN538369.1 ENSEMBL gene 258225 258327 103.0 - 0 ENSG00000207477.2 snRNA RNU6-318P 3 +4931 KN538369.1 HAVANA gene 307774 308252 479.0 + 0 ENSG00000281051.1 processed_pseudogene RPL23AP66 2 OTTHUMG00000157461.2 +4932 KN538369.1 HAVANA gene 295054 319539 6015.0 - 0 ENSG00000281818.2 protein_coding MANSC1 2 OTTHUMG00000168541.3 +4933 KN538369.1 HAVANA gene 324404 326065 1540.0 - 0 ENSG00000281234.1 lincRNA LOH12CR2 2 OTTHUMG00000187482.1 +4934 KN538369.1 HAVANA gene 421106 421484 379.0 - 0 ENSG00000281168.1 processed_pseudogene AC007619.3 2 OTTHUMG00000184718.1 +4935 KN538369.1 HAVANA gene 326077 438697 4980.0 + 0 ENSG00000280689.2 protein_coding BORCS5 2 OTTHUMG00000168542.2 +4936 KN538369.1 HAVANA gene 454356 460584 412.0 + 0 ENSG00000281671.1 lincRNA AC007619.4 2 OTTHUMG00000168583.1 +4937 KN538369.1 HAVANA gene 443213 531386 5724.0 - 0 ENSG00000280962.2 protein_coding DUSP16 2 OTTHUMG00000168582.4 +4938 KN538369.1 ENSEMBL gene 535360 535731 372.0 - 0 ENSG00000283760.2 protein_coding AC092824.3 3 +4939 KN538369.1 HAVANA gene 537204 537779 576.0 - 0 ENSG00000281525.1 processed_pseudogene AC092824.2 2 OTTHUMG00000157462.2 +4940 KN538370.1 HAVANA gene 5572 10882 1831.0 + 0 ENSG00000280651.1 processed_transcript AC156455.2 2 OTTHUMG00000168952.1 +4941 KN538371.1 HAVANA gene 16730 37105 3836.0 - 0 ENSG00000283302.2 protein_coding C13orf46 2 OTTHUMG00000191740.2 +4942 KN538371.1 HAVANA gene 166660 167911 380.0 - 0 ENSG00000280531.1 sense_intronic RASA3-IT1 2 OTTHUMG00000017400.1 overlapping_locus +4943 KN538371.1 HAVANA gene 40809 191702 4763.0 - 0 ENSG00000280477.1 protein_coding RASA3 2 OTTHUMG00000017399.3 overlapping_locus +4944 KN538372.1 ENSEMBL gene 77882 141416 312.0 + 0 ENSG00000284573.2 protein_coding AL161418.1 3 +4945 KN538372.1 HAVANA gene 172670 177125 1229.0 - 0 ENSG00000281509.1 unprocessed_pseudogene AL356585.7 2 OTTHUMG00000189380.1 +4946 KN538372.1 HAVANA gene 205230 206126 897.0 - 0 ENSG00000281175.2 processed_pseudogene AL356585.6 2 OTTHUMG00000192039.1 +4947 KN538372.1 HAVANA gene 193957 230684 1970.0 + 0 ENSG00000281252.1 lincRNA FAM230C 2 OTTHUMG00000189381.1 +4948 KN538372.1 ENSEMBL gene 234160 235824 1665.0 + 0 ENSG00000283864.2 protein_coding AL356585.9 3 +4949 KN538372.1 HAVANA gene 247573 247695 123.0 - 0 ENSG00000284712.1 processed_pseudogene AL356585.11 2 OTTHUMG00000192342.1 +4950 KN538372.1 HAVANA gene 252186 269482 1708.0 - 0 ENSG00000281616.1 unprocessed_pseudogene GGT4P 2 OTTHUMG00000189382.1 +4951 KN538372.1 HAVANA gene 296214 297393 1180.0 + 0 ENSG00000280895.2 processed_pseudogene SETD8P1 2 OTTHUMG00000191380.1 +4952 KN538372.1 HAVANA gene 277980 308594 2396.0 - 0 ENSG00000281084.1 unprocessed_pseudogene AL356585.5 2 OTTHUMG00000189383.1 +4953 KN538372.1 HAVANA gene 330593 347256 1017.0 + 0 ENSG00000281878.1 unprocessed_pseudogene AL356585.8 2 OTTHUMG00000189384.1 +4954 KN538373.1 HAVANA gene 40128 43630 461.0 - 0 ENSG00000281865.1 lincRNA LINC00411 2 OTTHUMG00000017293.1 +4955 KQ031383.1 HAVANA gene 4199 4672 378.0 - 0 ENSG00000282162.1 lincRNA LINC01784 2 OTTHUMG00000041465.1 +4956 KQ031383.1 HAVANA gene 6118 12923 1845.0 - 0 ENSG00000281934.1 protein_coding PRAMEF11 2 OTTHUMG00000001929.5 +4957 KQ031383.1 HAVANA gene 19638 22870 1417.0 - 0 ENSG00000282116.1 unprocessed_pseudogene PRAMEF30P 2 OTTHUMG00000001930.3 +4958 KQ031383.1 HAVANA gene 28921 30238 1108.0 - 0 ENSG00000282175.2 protein_coding HNRNPCL1 2 OTTHUMG00000001931.3 retrogene +4959 KQ031383.1 HAVANA gene 38599 43422 1642.0 + 0 ENSG00000282817.1 protein_coding PRAMEF2 2 OTTHUMG00000001986.1 +4960 KQ031383.1 HAVANA gene 60737 67714 1828.0 - 0 ENSG00000282584.1 protein_coding PRAMEF4 2 OTTHUMG00000001987.2 +4961 KQ031383.1 HAVANA gene 74409 79783 1525.0 - 0 ENSG00000282663.1 protein_coding PRAMEF10 2 OTTHUMG00000001981.3 +4962 KQ031383.1 ENSEMBL gene 84621 84992 372.0 - 0 ENSG00000283993.2 protein_coding AC245034.1 3 +4963 KQ031383.1 HAVANA gene 98123 101995 1660.0 + 0 ENSG00000279195.2 protein_coding PRAMEF7 2 OTTHUMG00000001982.3 +4964 KQ031383.1 ENSEMBL gene 104067 104173 107.0 + 0 ENSG00000282338.1 snRNA RNU6-1072P 3 +4965 KQ031383.1 HAVANA gene 107675 109766 1139.0 + 0 ENSG00000282549.1 unprocessed_pseudogene PRAMEF29P 2 OTTHUMG00000001983.1 +4966 KQ031383.1 HAVANA gene 119985 129093 1784.0 - 0 ENSG00000282119.2 protein_coding PRAMEF6 2 OTTHUMG00000001984.2 +4967 KQ031383.1 ENSEMBL gene 169106 170212 813.0 - 0 ENSG00000284215.2 pseudogene AC245056.4 3 +4968 KQ031383.1 HAVANA gene 183679 186470 1450.0 + 0 ENSG00000282791.1 unprocessed_pseudogene PRAMEF28P 2 OTTHUMG00000189309.1 overlapping_locus +4969 KQ031383.1 HAVANA gene 203816 210831 1863.0 - 0 ENSG00000282437.2 protein_coding PRAMEF27 2 OTTHUMG00000074727.3 +4970 KQ031383.1 HAVANA gene 215209 216569 1148.0 + 0 ENSG00000282559.1 protein_coding HNRNPCL3 2 OTTHUMG00000189236.2 retrogene +4971 KQ031383.1 HAVANA gene 223017 232224 1918.0 + 0 ENSG00000282566.2 protein_coding PRAMEF25 2 OTTHUMG00000074741.3 +4972 KQ031383.1 HAVANA gene 249519 252311 1447.0 - 0 ENSG00000282258.1 unprocessed_pseudogene PRAMEF34P 2 OTTHUMG00000074740.2 +4973 KQ031383.1 HAVANA gene 258743 260029 891.0 - 0 ENSG00000282562.1 unprocessed_pseudogene PRAMEF35P 2 OTTHUMG00000009502.2 +4974 KQ031383.1 HAVANA gene 269836 271194 1148.0 - 0 ENSG00000282530.1 protein_coding HNRNPCL2 2 OTTHUMG00000009503.4 +4975 KQ031383.1 HAVANA gene 283158 285955 1452.0 + 0 ENSG00000282468.1 transcribed_unprocessed_pseudogene PRAMEF36P 2 OTTHUMG00000009501.3 +4976 KQ031383.1 HAVANA gene 301321 301800 384.0 - 0 ENSG00000282341.1 lincRNA AC245056.2 2 OTTHUMG00000009500.2 +4977 KQ031383.1 HAVANA gene 303245 310301 1863.0 - 0 ENSG00000281987.2 protein_coding PRAMEF26 2 OTTHUMG00000009499.3 +4978 KQ031383.1 HAVANA gene 318926 319807 882.0 - 0 ENSG00000282095.1 protein_coding HNRNPCL4 2 OTTHUMG00000189238.2 retrogene +4979 KQ031383.1 HAVANA gene 326795 333804 1863.0 + 0 ENSG00000282298.1 protein_coding PRAMEF9 2 OTTHUMG00000189239.1 +4980 KQ031383.1 HAVANA gene 350670 355749 2300.0 - 0 ENSG00000282741.2 protein_coding PRAMEF13 2 OTTHUMG00000189240.2 +4981 KQ031383.1 ENSEMBL gene 367425 368534 816.0 + 0 ENSG00000283976.1 pseudogene AC244216.3 3 +4982 KQ031383.1 HAVANA gene 377045 380446 2067.0 - 0 ENSG00000282212.2 protein_coding PRAMEF18 2 OTTHUMG00000191961.2 +4983 KQ031383.1 HAVANA gene 400203 402992 1371.0 + 0 ENSG00000282289.1 unprocessed_pseudogene PRAMEF31P 2 OTTHUMG00000001985.2 +4984 KQ031383.1 HAVANA gene 408552 417654 1720.0 + 0 ENSG00000282424.1 protein_coding PRAMEF5 2 OTTHUMG00000184604.4 +4985 KQ031383.1 HAVANA gene 427879 429967 1068.0 - 0 ENSG00000282216.1 unprocessed_pseudogene PRAMEF32P 2 OTTHUMG00000008039.2 +4986 KQ031383.1 ENSEMBL gene 433465 433571 107.0 - 0 ENSG00000282288.1 snRNA RNU6-771P 3 +4987 KQ031383.1 HAVANA gene 435375 439514 1937.0 - 0 ENSG00000282583.1 protein_coding PRAMEF8 2 OTTHUMG00000008037.2 +4988 KQ031383.1 ENSEMBL gene 452652 453023 372.0 + 0 ENSG00000284080.2 protein_coding AC244216.4 3 +4989 KQ031383.1 HAVANA gene 457879 463247 1518.0 + 0 ENSG00000282125.2 protein_coding PRAMEF33 2 OTTHUMG00000008036.3 +4990 KQ031384.1 HAVANA gene 6058 6610 408.0 + 0 ENSG00000282172.1 IG_V_gene IGKV5-2 2 OTTHUMG00000151535.3 +4991 KQ031384.1 HAVANA gene 23907 24204 298.0 - 0 ENSG00000282050.1 IG_V_pseudogene IGKV7-3 2 OTTHUMG00000151534.1 +4992 KQ031384.1 HAVANA gene 31154 31579 426.0 - 0 ENSG00000282699.1 processed_pseudogene PGBD4P5 2 OTTHUMG00000151537.1 +4993 KQ031384.1 HAVANA gene 40492 41206 340.0 - 0 ENSG00000282448.1 IG_V_pseudogene IGKV2-4 2 OTTHUMG00000151536.1 +4994 KQ031384.1 HAVANA gene 56127 56783 532.0 - 0 ENSG00000282801.1 IG_V_gene IGKV1-5 2 OTTHUMG00000151560.2 +4995 KQ031384.1 HAVANA gene 75088 75593 380.0 - 0 ENSG00000282163.1 IG_V_gene IGKV1-6 2 OTTHUMG00000151559.4 +4996 KQ031384.1 HAVANA gene 87294 87907 445.0 - 0 ENSG00000282310.1 IG_V_gene IGKV3-7 2 OTTHUMG00000151636.2 +4997 KQ031384.1 HAVANA gene 101235 101757 398.0 - 0 ENSG00000283113.2 IG_V_gene IGKV1-8 2 OTTHUMG00000151634.2 +4998 KQ031384.1 HAVANA gene 118808 119341 409.0 - 0 ENSG00000282758.1 IG_V_gene IGKV1-9 2 OTTHUMG00000151637.2 +4999 KQ031384.1 HAVANA gene 128818 129512 351.0 - 0 ENSG00000282248.1 IG_V_pseudogene IGKV2-10 2 OTTHUMG00000151635.1 +5000 KQ031384.1 HAVANA gene 135997 136557 392.0 - 0 ENSG00000282823.1 IG_V_gene IGKV3-11 2 OTTHUMG00000151633.2 +5001 KQ031384.1 HAVANA gene 149050 149571 398.0 - 0 ENSG00000282694.3 IG_V_gene IGKV1-12 2 OTTHUMG00000151643.2 +5002 KQ031384.1 HAVANA gene 154821 155292 347.0 - 0 ENSG00000282603.1 IG_V_pseudogene IGKV1-13 2 OTTHUMG00000151647.1 +5003 KQ031384.1 HAVANA gene 186836 187610 347.0 - 0 ENSG00000282251.1 IG_V_pseudogene IGKV2-14 2 OTTHUMG00000151642.1 +5004 KQ031384.1 HAVANA gene 194003 194613 442.0 - 0 ENSG00000282447.1 IG_V_gene IGKV3-15 2 OTTHUMG00000151653.2 +5005 KQ031384.1 HAVANA gene 208685 209187 378.0 - 0 ENSG00000282282.1 IG_V_gene IGKV1-16 2 OTTHUMG00000151649.2 +5006 KQ031384.1 HAVANA gene 226168 226670 378.0 - 0 ENSG00000281978.1 IG_V_gene IGKV1-17 2 OTTHUMG00000151650.2 +5007 KQ031384.1 HAVANA gene 237550 238309 343.0 - 0 ENSG00000282200.1 IG_V_pseudogene IGKV2-18 2 OTTHUMG00000151644.1 +5008 KQ031384.1 HAVANA gene 243801 244083 283.0 - 0 ENSG00000282244.1 IG_V_pseudogene IGKV2-19 2 OTTHUMG00000151651.1 +5009 KQ031384.1 HAVANA gene 251400 251986 400.0 - 0 ENSG00000282402.1 IG_V_gene IGKV3-20 2 OTTHUMG00000151639.2 +5010 KQ031384.1 HAVANA gene 268577 269192 406.0 - 0 ENSG00000282210.1 IG_V_gene IGKV6-21 2 OTTHUMG00000151654.2 +5011 KQ031384.1 HAVANA gene 279601 280038 326.0 - 0 ENSG00000282762.1 IG_V_pseudogene IGKV1-22 2 OTTHUMG00000151646.2 +5012 KQ031384.1 HAVANA gene 280848 281379 323.0 - 0 ENSG00000282093.1 IG_V_pseudogene IGKV2-23 2 OTTHUMG00000151638.1 +5013 KQ031384.1 HAVANA gene 285154 285986 390.0 - 0 ENSG00000282671.1 IG_V_gene IGKV2-24 2 OTTHUMG00000151655.2 +5014 KQ031384.1 HAVANA gene 301326 301578 253.0 - 0 ENSG00000282062.1 IG_V_pseudogene IGKV3-25 2 OTTHUMG00000151645.1 +5015 KQ031384.1 HAVANA gene 304922 305655 343.0 - 0 ENSG00000282622.1 IG_V_pseudogene IGKV2-26 2 OTTHUMG00000151648.1 +5016 KQ031384.1 HAVANA gene 312335 312732 398.0 - 0 ENSG00000282000.1 unprocessed_pseudogene AC244255.2 2 OTTHUMG00000187609.1 +5017 KQ031384.1 HAVANA gene 322249 322754 382.0 - 0 ENSG00000282666.1 IG_V_gene IGKV1-27 2 OTTHUMG00000151640.2 +5018 KQ031384.1 HAVANA gene 330524 331287 390.0 - 0 ENSG00000282025.1 IG_V_gene IGKV2-28 2 OTTHUMG00000151652.2 +5019 KQ031384.1 HAVANA gene 343000 343738 372.0 - 0 ENSG00000282635.1 IG_V_pseudogene IGKV2-29 2 OTTHUMG00000151641.1 +5020 KQ031384.1 HAVANA gene 353607 354422 390.0 - 0 ENSG00000281933.1 IG_V_gene IGKV2-30 2 OTTHUMG00000151692.2 +5021 KQ031384.1 HAVANA gene 361037 361562 329.0 - 0 ENSG00000282743.1 IG_V_pseudogene IGKV3-31 2 OTTHUMG00000151688.1 +5022 KQ031384.1 HAVANA gene 362397 362841 311.0 - 0 ENSG00000282571.1 IG_V_pseudogene IGKV1-32 2 OTTHUMG00000151687.1 +5023 KQ031384.1 HAVANA gene 375320 377332 421.0 - 0 ENSG00000282811.1 IG_V_gene IGKV1-33 2 OTTHUMG00000151682.2 +5024 KQ031384.1 HAVANA gene 384124 384613 293.0 - 0 ENSG00000282149.1 IG_V_pseudogene IGKV3-34 2 OTTHUMG00000151693.1 +5025 KQ031384.1 HAVANA gene 395515 395799 285.0 - 0 ENSG00000282157.1 IG_V_pseudogene IGKV1-35 2 OTTHUMG00000151681.1 +5026 KQ031384.1 HAVANA gene 404059 404281 223.0 - 0 ENSG00000282646.1 IG_V_pseudogene IGKV2-36 2 OTTHUMG00000151683.1 +5027 KQ031384.1 HAVANA gene 406090 406611 398.0 - 0 ENSG00000282394.1 IG_V_gene IGKV1-37 2 OTTHUMG00000151689.2 +5028 KQ031384.1 HAVANA gene 418724 418970 247.0 - 0 ENSG00000282387.1 IG_V_pseudogene IGKV2-38 2 OTTHUMG00000151685.1 +5029 KQ031384.1 HAVANA gene 428451 428972 398.0 - 0 ENSG00000282120.1 IG_V_gene IGKV1-39 2 OTTHUMG00000151678.2 +5030 KQ031384.1 HAVANA gene 438936 439255 320.0 - 0 ENSG00000282182.1 IG_V_gene IGKV2-40 2 OTTHUMG00000188265.3 +5031 KQ031385.1 ENSEMBL gene 270010 270116 107.0 - 0 ENSG00000282510.1 snRNA RNU6-787P 3 +5032 KQ031385.1 ENSEMBL gene 300751 301048 298.0 + 0 ENSG00000282585.1 misc_RNA RN7SL482P 3 +5033 KQ031385.1 HAVANA gene 110410 365012 5850.0 + 0 ENSG00000282739.1 protein_coding SLC25A26 2 OTTHUMG00000149917.6 ncRNA_host +5034 KQ031387.1 HAVANA gene 117294 117707 414.0 + 0 ENSG00000282467.1 processed_pseudogene AL356131.2 2 OTTHUMG00000014934.1 +5035 KQ031387.1 ENSEMBL gene 215372 215736 363.0 - 0 ENSG00000283756.2 pseudogene LO000005.1 3 +5036 KQ031389.1 HAVANA gene 32135 32976 673.0 + 0 ENSG00000282193.1 processed_pseudogene AC254979.1 2 OTTHUMG00000175634.1 +5037 KQ031389.1 HAVANA gene 40622 60748 693.0 - 0 ENSG00000282362.2 transcribed_unprocessed_pseudogene AC254979.2 2 OTTHUMG00000156285.3 +5038 KQ031389.1 ENSEMBL gene 79331 79567 237.0 + 0 ENSG00000282654.1 misc_RNA RN7SL673P 3 +5039 KQ031389.1 ENSEMBL gene 70732 81163 2186.0 + 0 ENSG00000283465.3 protein_coding GOLGA8J 3 ncRNA_host +5040 KQ031389.1 HAVANA gene 86493 89760 474.0 - 0 ENSG00000282324.1 unprocessed_pseudogene DNM1P28 2 OTTHUMG00000175636.1 +5041 KQ031389.1 ENSEMBL gene 99864 99996 133.0 + 0 ENSG00000282767.1 snoRNA RF00096 3 +5042 KQ031389.1 HAVANA gene 91393 119424 1487.0 + 0 ENSG00000282509.1 transcribed_unprocessed_pseudogene ULK4P3 2 OTTHUMG00000175637.1 +5043 KQ031389.1 ENSEMBL gene 131411 131647 237.0 + 0 ENSG00000282328.1 misc_RNA RN7SL469P 3 +5044 KQ031389.1 ENSEMBL gene 122720 136506 5548.0 + 0 ENSG00000284076.2 protein_coding GOLGA8T 3 ncRNA_host +5045 KQ031389.1 HAVANA gene 138554 141084 452.0 - 0 ENSG00000282400.1 unprocessed_pseudogene DNM1P30 2 OTTHUMG00000175639.1 +5046 KQ031389.1 HAVANA gene 141608 141785 178.0 - 0 ENSG00000282316.1 unprocessed_pseudogene AC254962.2 2 OTTHUMG00000175640.1 +5047 KQ031389.1 HAVANA gene 211973 214520 2548.0 + 0 ENSG00000282249.1 processed_pseudogene AC254962.1 2 OTTHUMG00000175643.1 +5048 KQ031389.1 ENSEMBL gene 243378 243484 107.0 - 0 ENSG00000282009.1 snRNA RNU6-17P 3 +5049 KQ031389.1 HAVANA gene 341613 345537 3925.0 - 0 ENSG00000282722.1 TEC AC254958.1 2 OTTHUMG00000176883.1 +5050 KQ031389.1 ENSEMBL gene 352737 352841 105.0 + 0 ENSG00000282729.1 misc_RNA RF00019 3 +5051 KQ031389.1 ENSEMBL gene 359628 497696 1506.0 - 0 ENSG00000282088.3 protein_coding AC254952.1 3 +5052 KQ031389.1 HAVANA gene 1878443 1879175 733.0 - 0 ENSG00000282442.1 lincRNA AC254944.2 2 OTTHUMG00000183913.1 overlapping_locus +5053 KQ031389.1 HAVANA gene 1902789 1911566 970.0 + 0 ENSG00000282554.1 antisense AC254944.3 2 OTTHUMG00000175655.1 +5054 KQ031389.1 HAVANA gene 1910815 1911606 792.0 - 0 ENSG00000282670.1 lincRNA AC254944.4 2 OTTHUMG00000183912.1 +5055 KQ031389.1 ENSEMBL gene 1915605 1915841 237.0 - 0 ENSG00000282275.1 misc_RNA RN7SL628P 3 +5056 KQ031389.1 HAVANA gene 1917866 1918364 499.0 + 0 ENSG00000282207.1 antisense AC254944.1 2 OTTHUMG00000183911.1 +5057 KQ031389.1 ENSEMBL gene 1944785 1944917 133.0 - 0 ENSG00000282177.1 snoRNA RF00096 3 +5058 KQ031389.1 HAVANA gene 1925419 1953364 1563.0 - 0 ENSG00000282689.1 transcribed_unprocessed_pseudogene ULK4P2 2 OTTHUMG00000175653.1 +5059 KQ031389.1 HAVANA gene 1955012 1958279 508.0 + 0 ENSG00000282701.1 unprocessed_pseudogene DNM1P50 2 OTTHUMG00000175652.1 +5060 KQ031389.1 ENSEMBL gene 1965170 1965460 291.0 - 0 ENSG00000282547.1 misc_RNA RN7SL796P 3 +5061 KQ031389.1 HAVANA gene 1963602 1974027 2137.0 - 0 ENSG00000282773.1 protein_coding GOLGA8Q 2 OTTHUMG00000175651.2 ncRNA_host +5062 KQ031389.1 HAVANA gene 1980138 1986014 701.0 - 0 ENSG00000281960.1 lincRNA AC254960.1 2 OTTHUMG00000175650.1 +5063 KQ031389.1 HAVANA gene 2012398 2018739 1226.0 - 0 ENSG00000282109.1 unprocessed_pseudogene AC254960.2 2 OTTHUMG00000166829.2 +5064 KQ031389.1 HAVANA gene 2105615 2105761 147.0 + 0 ENSG00000282068.1 unprocessed_pseudogene AC254945.1 2 OTTHUMG00000184821.1 +5065 KQ031389.1 ENSEMBL gene 2120470 2120760 291.0 + 0 ENSG00000282629.1 misc_RNA RN7SL286P 3 +5066 KQ031389.1 ENSEMBL gene 2111786 2125658 5624.0 + 0 ENSG00000283589.3 protein_coding GOLGA8N 3 ncRNA_host +5067 KQ031389.1 ENSEMBL gene 2134571 2154300 1419.0 + 0 ENSG00000282168.3 protein_coding ARHGAP11A 3 +5068 KQ031389.1 HAVANA gene 2142469 2159979 2228.0 - 0 ENSG00000285828.1 antisense AC254945.3 2 OTTHUMG00000192957.1 +5069 KQ031389.1 HAVANA gene 2174450 2191465 750.0 - 0 ENSG00000282081.1 antisense AC254945.2 2 OTTHUMG00000159446.1 +5070 KQ031389.1 HAVANA gene 2160040 2215515 2196.0 + 0 ENSG00000281931.1 protein_coding SCG5 2 OTTHUMG00000159447.2 +5071 KQ031389.1 HAVANA gene 2235684 2237421 1738.0 - 0 ENSG00000282555.1 lincRNA AC090877.4 2 OTTHUMG00000172200.1 +5072 KQ031389.1 HAVANA gene 2236388 2263521 14606.0 + 0 ENSG00000282046.1 protein_coding GREM1 2 OTTHUMG00000129319.4 +5073 KQ031389.1 HAVANA gene 2355397 2355740 344.0 - 0 ENSG00000282410.1 transcribed_processed_pseudogene AC090877.3 2 OTTHUMG00000172232.2 overlapping_locus +5074 KQ090014.1 HAVANA gene 126753 140264 552.0 + 0 ENSG00000282938.1 lincRNA AC096721.2 2 OTTHUMG00000160711.1 overlapping_locus +5075 KQ090015.1 HAVANA gene 36066 42706 2176.0 + 0 ENSG00000282891.1 protein_coding STATH 2 OTTHUMG00000129394.2 +5076 KQ090015.1 HAVANA gene 68549 76674 2077.0 + 0 ENSG00000282967.1 protein_coding HTN3 2 OTTHUMG00000160841.3 +5077 KQ090015.1 HAVANA gene 90538 98981 3817.0 + 0 ENSG00000283046.1 protein_coding HTN1 2 OTTHUMG00000129397.3 +5078 KQ090015.1 HAVANA gene 107525 125406 886.0 + 0 ENSG00000283090.1 transcribed_unitary_pseudogene CSN1S2AP 2 OTTHUMG00000160842.1 +5079 KQ090015.1 HAVANA gene 178202 221385 5336.0 + 0 ENSG00000282868.1 protein_coding PRR27 2 OTTHUMG00000129402.5 +5080 KQ090016.1 ENSEMBL gene 69950 70052 103.0 - 0 ENSG00000282867.1 snRNA RNU6-130P 3 +5081 KQ090016.1 HAVANA gene 29595 107366 8722.0 - 0 ENSG00000283068.1 protein_coding IBTK 2 OTTHUMG00000015102.2 ncRNA_host +5082 KQ090016.1 HAVANA gene 133811 134789 979.0 - 0 ENSG00000282877.1 processed_pseudogene AC209420.1 2 OTTHUMG00000015104.1 +5083 KQ090016.1 HAVANA gene 233021 240643 6904.0 + 0 ENSG00000283085.1 protein_coding TPBG 2 OTTHUMG00000015103.1 +5084 KQ090018.1 HAVANA gene 112043 112390 348.0 + 0 ENSG00000282942.1 processed_pseudogene RPS26P3 2 OTTHUMG00000019545.3 +5085 KQ090021.1 ENSEMBL gene 48640 48920 281.0 - 0 ENSG00000283092.1 misc_RNA RN7SL78P 3 +5086 KQ090021.1 HAVANA gene 33750 61434 2695.0 + 0 ENSG00000282866.1 transcribed_unprocessed_pseudogene CFL1P1 2 OTTHUMG00000018684.5 +5087 KQ090021.1 ENSEMBL gene 77778 78311 534.0 - 0 ENSG00000283059.3 protein_coding KLLN 3 +5088 KQ090021.1 HAVANA gene 94516 96250 499.0 + 0 ENSG00000283055.1 sense_intronic AC022016.1 2 OTTHUMG00000018686.1 overlapping_locus +5089 KQ090021.1 HAVANA gene 161291 161813 523.0 + 0 ENSG00000283120.1 processed_pseudogene RPL11P3 2 OTTHUMG00000018687.1 overlapping_locus +5090 KQ090021.1 ENSEMBL gene 79262 182163 3145.0 + 0 ENSG00000284792.1 protein_coding PTEN 3 +5091 KQ090021.1 ENSEMBL gene 210407 210484 78.0 - 0 ENSG00000282931.1 snoRNA RF00284 3 +5092 KQ090022.1 HAVANA gene 107798 108262 465.0 - 0 ENSG00000283114.1 processed_pseudogene NDUFB11P1 2 OTTHUMG00000154744.3 +5093 KQ090022.1 HAVANA gene 138262 139016 755.0 - 0 ENSG00000283062.1 processed_pseudogene PGAM1P9 2 OTTHUMG00000160131.1 +5094 KQ090022.1 HAVANA gene 171957 179942 775.0 - 0 ENSG00000282929.1 antisense AP000722.2 2 OTTHUMG00000167359.1 +5095 KQ090026.1 HAVANA gene 2124 2458 335.0 - 0 ENSG00000282845.1 processed_pseudogene EIF1P4 2 OTTHUMG00000177361.1 +5096 KQ090026.1 HAVANA gene 9634 19047 2665.0 + 0 ENSG00000283056.1 protein_coding ZG16B 2 OTTHUMG00000128933.3 +5097 KQ090026.1 HAVANA gene 19030 22206 2961.0 - 0 ENSG00000283070.3 transcribed_unitary_pseudogene PRSS30P 2 OTTHUMG00000191915.1 +5098 KQ090026.1 ENSEMBL gene 32158 37628 1601.0 - 0 ENSG00000282937.4 protein_coding PRSS22 3 +5099 KQ090026.1 HAVANA gene 37356 39184 265.0 + 0 ENSG00000283112.1 antisense AC217628.1 2 OTTHUMG00000177362.1 +5100 KQ090026.1 HAVANA gene 51743 53013 667.0 - 0 ENSG00000283049.1 lincRNA AC003965.3 2 OTTHUMG00000177363.1 +5101 KQ090027.1 ENSEMBL gene 146292 148601 2310.0 - 0 ENSG00000282945.3 protein_coding CMTR2 3 +5102 KQ090027.1 ENSEMBL gene 156663 157237 573.0 + 0 ENSG00000284106.1 pseudogene AC009136.2 3 +5103 KQ090027.1 HAVANA gene 169037 170323 434.0 + 0 ENSG00000283015.1 lincRNA AC009136.1 2 OTTHUMG00000176794.1 +5104 KQ090027.1 HAVANA gene 226190 257935 1703.0 + 0 ENSG00000282830.1 protein_coding CALB2 2 OTTHUMG00000137589.6 +5105 KQ090028.1 HAVANA gene 49814 53361 3548.0 + 0 ENSG00000283080.1 TEC AC048380.4 2 OTTHUMG00000180000.1 overlapping_locus +5106 KQ090028.1 ENSEMBL gene 155651 155719 69.0 + 0 ENSG00000282900.2 miRNA MIR4743 3 +5107 KQ090028.1 HAVANA gene 162845 177689 465.0 - 0 ENSG00000282959.1 antisense AC022919.2 2 OTTHUMG00000179906.1 +5108 KQ090028.1 HAVANA gene 244963 245588 626.0 + 0 ENSG00000283002.1 TEC AC022919.3 2 OTTHUMG00000179908.1 overlapping_locus +5109 KQ090028.1 HAVANA gene 315321 324040 877.0 - 0 ENSG00000282923.1 antisense AC093567.2 2 OTTHUMG00000180025.1 +5110 KQ090028.1 HAVANA gene 24065 352487 8100.0 + 0 ENSG00000282825.1 protein_coding CTIF 2 OTTHUMG00000132656.14 ncRNA_host,overlapping_locus +5111 KQ458382.1 HAVANA gene 17183 18422 1240.0 + 0 ENSG00000283119.1 processed_pseudogene AC205875.1 2 OTTHUMG00000011046.1 +5112 KQ458383.1 HAVANA gene 7280 7739 460.0 + 0 ENSG00000282934.1 processed_pseudogene AL109936.3 2 OTTHUMG00000003221.1 +5113 KQ458383.1 HAVANA gene 51287 56731 5445.0 - 0 ENSG00000283124.2 lincRNA LINC01355 2 OTTHUMG00000175761.3 +5114 KQ458383.1 HAVANA gene 67776 72845 604.0 + 0 ENSG00000284647.1 lincRNA AL109936.5 2 OTTHUMG00000192303.1 +5115 KQ458383.1 HAVANA gene 73750 114315 8676.0 - 0 ENSG00000282958.2 protein_coding HNRNPR 2 OTTHUMG00000003224.5 +5116 KQ458383.1 HAVANA gene 129427 139421 4392.0 - 0 ENSG00000283009.1 protein_coding ZNF436 2 OTTHUMG00000003232.2 +5117 KQ458383.1 ENSEMBL gene 140233 140325 93.0 + 0 ENSG00000282829.1 misc_RNA RF00019 3 +5118 KQ458383.1 HAVANA gene 138976 141818 2655.0 + 0 ENSG00000283106.1 antisense ZNF436-AS1 2 OTTHUMG00000003225.2 ncRNA_host +5119 KQ458383.1 HAVANA gene 148359 149008 650.0 - 0 ENSG00000283012.1 lincRNA AL109936.4 2 OTTHUMG00000185287.1 +5120 KQ458383.1 HAVANA gene 180811 182125 426.0 + 0 ENSG00000283105.1 processed_pseudogene AL357134.2 2 OTTHUMG00000003230.2 +5121 KQ458383.1 HAVANA gene 151040 194719 3515.0 - 0 ENSG00000282941.2 protein_coding TCEA3 2 OTTHUMG00000003233.5 +5122 KQ458383.1 HAVANA gene 198542 254547 4988.0 - 0 ENSG00000282854.1 protein_coding ASAP3 2 OTTHUMG00000003234.7 +5123 KQ458383.1 ENSEMBL gene 274399 274770 372.0 - 0 ENSG00000284267.2 protein_coding AL021154.3 3 +5124 KQ458383.1 HAVANA gene 276409 301199 5457.0 - 0 ENSG00000282899.1 protein_coding E2F2 2 OTTHUMG00000003223.1 +5125 KQ458383.1 HAVANA gene 319118 320894 456.0 - 0 ENSG00000282990.1 lincRNA AL021154.2 2 OTTHUMG00000037485.1 +5126 KQ458383.1 HAVANA gene 327897 329773 1797.0 - 0 ENSG00000283060.1 protein_coding ID3 2 OTTHUMG00000003229.2 +5127 KQ458384.1 HAVANA gene 954 2341 1388.0 + 0 ENSG00000282856.1 processed_pseudogene AL357556.2 2 OTTHUMG00000040751.2 +5128 KQ458384.1 HAVANA gene 6154 7167 428.0 - 0 ENSG00000285104.1 antisense AL357556.3 2 OTTHUMG00000192487.1 +5129 KQ458384.1 HAVANA gene 76577 76823 247.0 + 0 ENSG00000282862.1 transcribed_processed_pseudogene RPS21P1 2 OTTHUMG00000157020.2 overlapping_locus +5130 KQ458384.1 HAVANA gene 93515 148073 5702.0 - 0 ENSG00000282880.1 protein_coding B3GALNT2 2 OTTHUMG00000040468.5 +5131 KQ458384.1 HAVANA gene 163563 164277 715.0 + 0 ENSG00000282918.1 processed_pseudogene MTCYBP14 2 OTTHUMG00000040469.2 +5132 KQ458384.1 HAVANA gene 181112 181633 522.0 + 0 ENSG00000283066.1 processed_pseudogene MTND6P14 2 OTTHUMG00000040746.1 +5133 KQ458384.1 HAVANA gene 181644 183437 1794.0 - 0 ENSG00000283014.1 processed_pseudogene MTND5P19 2 OTTHUMG00000040745.2 +5134 KQ458384.1 HAVANA gene 183645 185007 1363.0 - 0 ENSG00000282824.1 processed_pseudogene MTND4P10 2 OTTHUMG00000040744.2 overlapping_locus +5135 KQ458384.1 HAVANA gene 185004 185298 295.0 - 0 ENSG00000282857.1 processed_pseudogene MTND4LP21 2 OTTHUMG00000040743.2 overlapping_locus +5136 KQ458384.1 HAVANA gene 185351 185689 339.0 - 0 ENSG00000283116.1 processed_pseudogene MTND3P8 2 OTTHUMG00000040742.1 +5137 KQ458384.1 HAVANA gene 185751 185982 232.0 - 0 ENSG00000282999.1 processed_pseudogene MTCO3P46 2 OTTHUMG00000040741.2 +5138 KQ458384.1 HAVANA gene 209353 210529 708.0 + 0 ENSG00000283019.1 processed_pseudogene FO393422.2 2 OTTHUMG00000184483.1 +5139 KQ458385.1 HAVANA gene 24922 29236 4315.0 - 0 ENSG00000282841.1 protein_coding CTAGE1 2 OTTHUMG00000165867.3 retrogene +5140 KQ458385.1 HAVANA gene 30150 30615 466.0 - 0 ENSG00000283107.1 processed_pseudogene AC099849.2 2 OTTHUMG00000185042.1 +5141 KQ458385.1 HAVANA gene 203466 204228 763.0 + 0 ENSG00000282839.1 processed_pseudogene RPS4XP18 2 OTTHUMG00000158176.3 +5142 KQ458386.1 HAVANA gene 5982 11330 516.0 + 0 ENSG00000282982.1 antisense AC008649.4 2 OTTHUMG00000180864.1 +5143 KQ458386.1 HAVANA gene 28718 46591 2798.0 + 0 ENSG00000282986.1 protein_coding EIF3K 2 OTTHUMG00000180865.4 +5144 KQ458386.1 HAVANA gene 93509 103242 242.0 - 0 ENSG00000282976.1 antisense AC008649.3 2 OTTHUMG00000182086.1 +5145 KQ458386.1 HAVANA gene 57285 141219 6098.0 + 0 ENSG00000282844.1 protein_coding ACTN4 2 OTTHUMG00000137382.3 +5146 KQ458386.1 HAVANA gene 147887 149466 1580.0 + 0 ENSG00000282869.1 antisense AC256309.1 2 OTTHUMG00000182526.1 +5147 KQ458386.1 ENSEMBL gene 139828 154078 3129.0 - 0 ENSG00000285078.1 protein_coding AC256309.3 3 +5148 KQ458386.1 HAVANA gene 180610 183148 644.0 - 0 ENSG00000282902.1 protein_coding LGALS7B 2 OTTHUMG00000182607.1 +5149 KQ458386.1 HAVANA gene 198916 201430 795.0 + 0 ENSG00000283082.1 protein_coding LGALS7 2 OTTHUMG00000182606.3 +5150 KQ458386.1 ENSEMBL gene 206684 206791 108.0 - 0 ENSG00000283011.1 snRNA RNU6-140P 3 +5151 KQ458386.1 ENSEMBL gene 206999 207376 378.0 + 0 ENSG00000283807.2 protein_coding AC256309.2 3 +5152 KQ458386.1 ENSEMBL gene 217259 217447 189.0 + 0 ENSG00000283890.2 protein_coding AC104534.3 3 +5153 KQ458386.1 HAVANA gene 211354 223036 2645.0 - 0 ENSG00000282992.1 protein_coding LGALS4 2 OTTHUMG00000182608.2 +5154 KQ458386.1 HAVANA gene 229838 232895 566.0 + 0 ENSG00000283077.1 antisense AC104534.2 2 OTTHUMG00000182611.1 +5155 KQ458386.1 HAVANA gene 225094 241677 2467.0 - 0 ENSG00000282853.1 protein_coding ECH1 2 OTTHUMG00000182609.2 overlapping_locus +5156 KQ458386.1 HAVANA gene 227143 249850 963.0 - 0 ENSG00000282832.1 protein_coding AC008982.3 2 OTTHUMG00000182610.2 overlapping_locus +5157 KQ458386.1 HAVANA gene 254401 255171 493.0 - 0 ENSG00000282846.1 sense_intronic AC008982.4 2 OTTHUMG00000182613.1 overlapping_locus +5158 KQ458386.1 HAVANA gene 246060 262019 6821.0 - 0 ENSG00000282947.2 protein_coding HNRNPL 2 OTTHUMG00000182612.3 overlapping_locus +5159 KQ458386.1 HAVANA gene 279831 283435 504.0 + 0 ENSG00000283121.1 antisense AC011455.4 2 OTTHUMG00000182690.1 +5160 KQ458386.1 HAVANA gene 277506 287951 4201.0 - 0 ENSG00000282895.1 protein_coding RINL 2 OTTHUMG00000182299.5 +5161 KQ458386.1 HAVANA gene 288227 309534 6224.0 - 0 ENSG00000283100.1 protein_coding SIRT2 2 OTTHUMG00000150480.3 +5162 KQ458386.1 HAVANA gene 309372 318565 2324.0 + 0 ENSG00000282905.1 protein_coding NFKBIB 2 OTTHUMG00000177631.2 +5163 KQ458386.1 HAVANA gene 318652 321830 1057.0 - 0 ENSG00000283099.1 protein_coding CCER2 2 OTTHUMG00000177374.1 +5164 KQ458386.1 HAVANA gene 324938 340568 3231.0 - 0 ENSG00000283104.1 protein_coding SARS2 2 OTTHUMG00000182691.1 overlapping_locus +5165 KQ458386.1 HAVANA gene 340220 342834 2144.0 + 0 ENSG00000283018.1 protein_coding MRPS12 2 OTTHUMG00000182692.2 +5166 KQ458386.1 HAVANA gene 344969 348304 3336.0 - 0 ENSG00000282930.1 lincRNA ERVK9-11 2 OTTHUMG00000182717.2 overlapping_locus +5167 KQ458386.1 HAVANA gene 325076 359527 1967.0 - 0 ENSG00000282835.1 protein_coding AC011455.3 2 OTTHUMG00000182716.1 overlapping_locus +5168 KQ458386.1 HAVANA gene 351073 385582 4960.0 - 0 ENSG00000282954.1 protein_coding FBXO17 2 OTTHUMG00000182718.3 overlapping_locus +5169 KQ458387.1 HAVANA gene 12484 13672 1189.0 - 0 ENSG00000283032.1 processed_pseudogene OLA1P1 2 OTTHUMG00000151284.1 +5170 KQ458387.1 HAVANA gene 30627 32293 631.0 + 0 ENSG00000282969.1 lincRNA AC235563.1 2 OTTHUMG00000150921.10 +5171 KQ458387.1 HAVANA gene 29000 32494 667.0 - 0 ENSG00000283089.1 lincRNA AC235563.2 2 OTTHUMG00000189689.8 +5172 KQ458387.1 ENSEMBL gene 32772 45770 1188.0 - 0 ENSG00000282837.3 protein_coding AC254788.1 3 +5173 KQ458387.1 HAVANA gene 52072 57187 1490.0 - 0 ENSG00000282884.1 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000150922.2 +5174 KQ458388.1 HAVANA gene 1372 2560 1189.0 - 0 ENSG00000282919.1 processed_pseudogene OLA1P1 2 OTTHUMG00000151284.1 +5175 KQ458388.1 HAVANA gene 20088 24495 2443.0 - 0 ENSG00000282966.2 protein_coding CYP2D6 2 OTTHUMG00000150918.5 +5176 KQ458388.1 HAVANA gene 39844 40299 456.0 + 0 ENSG00000283006.2 processed_pseudogene AC225828.1 2 OTTHUMG00000155612.2 overlapping_locus +5177 KQ458388.1 HAVANA gene 59068 60734 631.0 + 0 ENSG00000282874.1 lincRNA AC254847.1 2 OTTHUMG00000150921.10 +5178 KQ458388.1 HAVANA gene 57441 60935 667.0 - 0 ENSG00000282979.1 lincRNA AC254847.2 2 OTTHUMG00000189689.8 +5179 KQ458388.1 HAVANA gene 61211 65585 2260.0 - 0 ENSG00000283008.1 polymorphic_pseudogene CYP2D7 2 OTTHUMG00000030222.8 +5180 KQ458388.1 HAVANA gene 70895 76012 1490.0 - 0 ENSG00000282926.1 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000150922.2 +5181 KQ759759.1 HAVANA gene 278 24163 8428.0 - 0 ENSG00000283350.1 protein_coding MUC6 2 OTTHUMG00000165140.4 +5182 KQ759759.1 HAVANA gene 37333 43202 3443.0 + 0 ENSG00000283640.1 lincRNA AC256300.1 2 OTTHUMG00000165161.2 +5183 KQ759759.1 ENSEMBL gene 62475 99822 15877.0 + 0 ENSG00000284971.1 protein_coding MUC2 3 +5184 KQ759759.1 HAVANA gene 147368 190563 17448.0 + 0 ENSG00000283158.1 protein_coding MUC5AC 2 OTTHUMG00000154270.5 +5185 KQ759760.1 ENSEMBL gene 170779 172896 207.0 + 0 ENSG00000285333.1 protein_coding AC079597.3 3 +5186 KQ759760.1 HAVANA gene 273538 274045 508.0 + 0 ENSG00000283163.1 TEC AC079597.2 2 OTTHUMG00000169851.1 +5187 KQ759761.1 HAVANA gene 4240 8647 2443.0 - 0 ENSG00000283284.2 protein_coding CYP2D6 2 OTTHUMG00000150918.5 +5188 KQ759761.1 HAVANA gene 10286 10741 456.0 + 0 ENSG00000283173.1 processed_pseudogene AC255093.4 2 OTTHUMG00000155612.2 overlapping_locus +5189 KQ759761.1 HAVANA gene 15805 17473 631.0 + 0 ENSG00000281266.2 lincRNA AC255093.2 2 OTTHUMG00000150921.10 +5190 KQ759761.1 HAVANA gene 14178 17674 667.0 - 0 ENSG00000281053.2 lincRNA AC255093.1 2 OTTHUMG00000189689.8 +5191 KQ759761.1 ENSEMBL gene 19343 21319 540.0 - 0 ENSG00000283140.3 protein_coding AC255093.3 3 +5192 KQ759761.1 ENSEMBL gene 33002 34978 540.0 - 0 ENSG00000283373.3 protein_coding AC255093.5 3 +5193 KQ759761.1 HAVANA gene 41305 46422 1490.0 - 0 ENSG00000283628.1 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000150922.2 +5194 KQ759762.1 ENSEMBL gene 5898 5995 98.0 + 0 ENSG00000283595.1 misc_RNA RF00019 3 +5195 KQ759762.1 ENSEMBL gene 27171 27274 104.0 - 0 ENSG00000283264.1 snRNA RNU6-409P 3 +5196 KQ759762.1 ENSEMBL gene 10731 69326 7094.0 + 0 ENSG00000283243.2 protein_coding SHANK3 3 +5197 KQ759762.1 HAVANA gene 76710 79631 284.0 - 0 ENSG00000283287.1 antisense FO681507.1 2 OTTHUMG00000166231.1 +5198 KQ759762.1 HAVANA gene 74313 81445 2059.0 + 0 ENSG00000283539.1 protein_coding ACR 2 OTTHUMG00000150155.3 +5199 KQ759762.1 HAVANA gene 90787 91546 760.0 - 0 ENSG00000283252.1 processed_pseudogene AC002056.3 2 OTTHUMG00000150159.1 +5200 KQ983255.1 ENSEMBL gene 10382 11488 813.0 - 0 ENSG00000284281.2 pseudogene AC245056.5 3 +5201 KQ983255.1 HAVANA gene 24955 27746 1450.0 + 0 ENSG00000283185.1 unprocessed_pseudogene PRAMEF28P 2 OTTHUMG00000189309.1 overlapping_locus +5202 KQ983255.1 HAVANA gene 45092 52107 1863.0 - 0 ENSG00000283425.1 protein_coding PRAMEF27 2 OTTHUMG00000074727.3 +5203 KQ983255.1 HAVANA gene 56485 57845 1148.0 + 0 ENSG00000283292.1 protein_coding HNRNPCL3 2 OTTHUMG00000189236.2 retrogene +5204 KQ983255.1 HAVANA gene 64293 73500 1918.0 + 0 ENSG00000283348.2 protein_coding PRAMEF25 2 OTTHUMG00000074741.3 +5205 KQ983255.1 HAVANA gene 90795 93587 1447.0 - 0 ENSG00000283661.1 unprocessed_pseudogene PRAMEF34P 2 OTTHUMG00000074740.2 +5206 KQ983255.1 HAVANA gene 100019 101305 891.0 - 0 ENSG00000283410.1 unprocessed_pseudogene PRAMEF35P 2 OTTHUMG00000009502.2 +5207 KQ983255.1 HAVANA gene 111112 112470 1148.0 - 0 ENSG00000283370.1 protein_coding HNRNPCL2 2 OTTHUMG00000009503.4 +5208 KQ983255.1 HAVANA gene 124434 127231 1452.0 + 0 ENSG00000283543.1 transcribed_unprocessed_pseudogene PRAMEF36P 2 OTTHUMG00000009501.3 +5209 KQ983255.1 HAVANA gene 142597 143076 384.0 - 0 ENSG00000283624.1 lincRNA AC245056.3 2 OTTHUMG00000009500.2 +5210 KQ983255.1 HAVANA gene 144521 151577 1863.0 - 0 ENSG00000283216.1 protein_coding PRAMEF26 2 OTTHUMG00000009499.3 +5211 KQ983255.1 HAVANA gene 160202 161083 882.0 - 0 ENSG00000283231.1 protein_coding HNRNPCL4 2 OTTHUMG00000189238.2 retrogene +5212 KQ983255.1 HAVANA gene 168071 175080 1863.0 + 0 ENSG00000283139.1 protein_coding PRAMEF9 2 OTTHUMG00000189239.1 +5213 KQ983255.1 HAVANA gene 211719 214508 1371.0 + 0 ENSG00000283565.1 unprocessed_pseudogene PRAMEF31P 2 OTTHUMG00000001985.2 +5214 KQ983255.1 HAVANA gene 220068 229170 1720.0 + 0 ENSG00000283150.1 protein_coding PRAMEF5 2 OTTHUMG00000184604.4 +5215 KQ983255.1 HAVANA gene 239395 241483 1068.0 - 0 ENSG00000283650.1 unprocessed_pseudogene PRAMEF32P 2 OTTHUMG00000008039.2 +5216 KQ983255.1 ENSEMBL gene 244981 245087 107.0 - 0 ENSG00000202250.2 snRNA RNU6-771P 3 +5217 KQ983255.1 HAVANA gene 246891 251030 1937.0 - 0 ENSG00000283387.1 protein_coding PRAMEF8 2 OTTHUMG00000008037.2 +5218 KQ983255.1 ENSEMBL gene 264168 264539 372.0 + 0 ENSG00000284531.2 protein_coding AC244216.5 3 +5219 KQ983255.1 HAVANA gene 269395 274763 1518.0 + 0 ENSG00000283488.2 protein_coding PRAMEF33 2 OTTHUMG00000008036.3 +5220 KQ983256.1 ENSEMBL gene 9648 9976 329.0 + 0 ENSG00000283135.1 misc_RNA RN7SKP178 3 +5221 KQ983256.1 HAVANA gene 58109 59163 502.0 + 0 ENSG00000283134.1 processed_pseudogene PPIAP68 2 OTTHUMG00000154643.2 +5222 KQ983256.1 HAVANA gene 98603 109876 781.0 + 0 ENSG00000283315.1 antisense AC007679.3 2 OTTHUMG00000154652.1 +5223 KQ983256.1 ENSEMBL gene 116898 116992 95.0 - 0 ENSG00000283129.1 misc_RNA RF00006 3 +5224 KQ983256.1 ENSEMBL gene 134611 134715 105.0 + 0 ENSG00000283687.1 misc_RNA RF00019 3 +5225 KQ983256.1 HAVANA gene 149450 149863 414.0 + 0 ENSG00000283641.1 processed_pseudogene AC007679.4 2 OTTHUMG00000154655.2 +5226 KQ983256.1 HAVANA gene 102739 195321 14373.0 - 0 ENSG00000283510.1 protein_coding INO80D 2 OTTHUMG00000154649.3 ncRNA_host +5227 KQ983256.1 HAVANA gene 193623 195582 1034.0 + 0 ENSG00000283192.1 lincRNA AC007383.4 2 OTTHUMG00000154653.1 +5228 KQ983256.1 HAVANA gene 225128 225518 391.0 - 0 ENSG00000283168.1 processed_pseudogene GCSHP3 2 OTTHUMG00000154650.1 overlapping_locus +5229 KQ983256.1 HAVANA gene 224565 231341 1411.0 + 0 ENSG00000283260.1 antisense AC007383.5 2 OTTHUMG00000154651.1 +5230 KQ983256.1 HAVANA gene 223835 268621 12268.0 - 0 ENSG00000283447.1 protein_coding NDUFS1 2 OTTHUMG00000132892.6 overlapping_locus +5231 KQ983256.1 ENSEMBL gene 269861 270042 182.0 + 0 ENSG00000283254.1 misc_RNA RF02271 3 +5232 KQ983256.1 ENSEMBL gene 270859 270947 89.0 + 0 ENSG00000283323.1 snoRNA RF00134 3 +5233 KQ983256.1 ENSEMBL gene 270896 270975 80.0 + 0 ENSG00000283671.1 snoRNA SNORD51 3 +5234 KQ983256.1 ENSEMBL gene 271246 271377 132.0 + 0 ENSG00000283482.1 snoRNA SNORA41 3 +5235 KQ983256.1 HAVANA gene 268603 271946 1915.0 + 0 ENSG00000283391.1 protein_coding EEF1B2 2 OTTHUMG00000132891.3 ncRNA_host +5236 KQ983256.1 ENSEMBL gene 280171 280548 378.0 + 0 ENSG00000283995.2 protein_coding AC007383.6 3 +5237 KQ983256.1 HAVANA gene 284334 327065 2834.0 - 0 ENSG00000283448.1 protein_coding GPR1 2 OTTHUMG00000132894.3 +5238 KQ983256.1 ENSEMBL gene 330334 330653 320.0 + 0 ENSG00000283395.1 misc_RNA RN7SKP200 3 +5239 KQ983256.1 HAVANA gene 373266 373556 291.0 - 0 ENSG00000283357.1 processed_pseudogene HMGN1P6 2 OTTHUMG00000154645.1 +5240 KQ983256.1 ENSEMBL gene 373704 373852 149.0 - 0 ENSG00000281402.2 misc_RNA RN7SKP260 3 +5241 KQ983256.1 HAVANA gene 312394 378964 3212.0 + 0 ENSG00000283643.3 processed_transcript GPR1-AS 2 OTTHUMG00000189431.3 ncRNA_host +5242 KQ983256.1 HAVANA gene 388301 428076 10912.0 + 0 ENSG00000283649.2 protein_coding ZDBF2 2 OTTHUMG00000154648.3 +5243 KQ983256.1 ENSEMBL gene 469377 469754 378.0 + 0 ENSG00000284455.2 protein_coding AC017081.4 3 +5244 KQ983256.1 ENSEMBL gene 513843 514214 372.0 + 0 ENSG00000284220.2 protein_coding AC017081.3 3 +5245 KQ983256.1 HAVANA gene 523725 524547 823.0 - 0 ENSG00000283169.1 processed_pseudogene AC017081.2 2 OTTHUMG00000154654.2 +5246 KQ983256.1 HAVANA gene 532930 533876 947.0 - 0 ENSG00000283305.1 processed_pseudogene HNRNPA1P51 2 OTTHUMG00000154646.1 +5247 KQ983257.1 HAVANA gene 33718 56134 1707.0 + 0 ENSG00000283153.1 protein_coding FRG1 2 OTTHUMG00000160202.24 +5248 KQ983257.1 HAVANA gene 66529 66777 249.0 - 0 ENSG00000283508.1 processed_pseudogene MLLT10P2 2 OTTHUMG00000161001.1 +5249 KQ983257.1 HAVANA gene 72832 75309 889.0 + 0 ENSG00000283127.1 processed_pseudogene AF146191.4 2 OTTHUMG00000185262.3 +5250 KQ983257.1 HAVANA gene 75453 77801 1305.0 - 0 ENSG00000283593.1 unprocessed_pseudogene TUBB7P 2 OTTHUMG00000161002.1 +5251 KQ983257.1 ENSEMBL gene 107730 107847 118.0 + 0 ENSG00000283700.1 rRNA_pseudogene RNA5SP174 3 +5252 KQ983257.1 ENSEMBL gene 110290 110408 119.0 + 0 ENSG00000283581.1 rRNA_pseudogene RNA5SP175 3 +5253 KQ983257.1 HAVANA gene 114008 115266 1259.0 - 0 ENSG00000283181.1 unprocessed_pseudogene DUX4L9 2 OTTHUMG00000161003.2 +5254 KQ983257.1 ENSEMBL gene 116955 119843 2082.0 - 0 ENSG00000285063.1 protein_coding FRG2 3 +5255 KQ983257.1 HAVANA gene 130673 131156 484.0 - 0 ENSG00000283449.1 processed_pseudogene RARRES2P4 2 OTTHUMG00000160173.1 +5256 KQ983257.1 HAVANA gene 160550 161824 1275.0 + 0 ENSG00000283363.1 unprocessed_pseudogene DUX4L8 2 OTTHUMG00000161320.5 +5257 KQ983257.1 ENSEMBL gene 163856 165127 1272.0 + 0 ENSG00000284383.2 protein_coding CT476828.19 3 +5258 KQ983257.1 ENSEMBL gene 167162 168433 1272.0 + 0 ENSG00000284496.2 protein_coding CT476828.21 3 +5259 KQ983257.1 ENSEMBL gene 170468 171739 1272.0 + 0 ENSG00000284262.2 protein_coding CT476828.18 3 +5260 KQ983257.1 ENSEMBL gene 173774 175045 1272.0 + 0 ENSG00000283767.2 protein_coding CT476828.1 3 +5261 KQ983257.1 ENSEMBL gene 177080 178351 1272.0 + 0 ENSG00000284210.2 protein_coding CT476828.17 3 +5262 KQ983257.1 ENSEMBL gene 180386 181657 1272.0 + 0 ENSG00000283884.2 protein_coding CT476828.6 3 +5263 KQ983257.1 ENSEMBL gene 183692 184963 1272.0 + 0 ENSG00000283955.2 protein_coding CT476828.10 3 +5264 KQ983257.1 ENSEMBL gene 186998 188269 1272.0 + 0 ENSG00000284025.2 protein_coding CT476828.12 3 +5265 KQ983257.1 ENSEMBL gene 190304 191575 1272.0 + 0 ENSG00000283878.2 protein_coding CT476828.5 3 +5266 KQ983257.1 ENSEMBL gene 193610 194881 1272.0 + 0 ENSG00000284181.2 protein_coding CT476828.16 3 +5267 KQ983257.1 ENSEMBL gene 196916 198187 1272.0 + 0 ENSG00000283820.2 protein_coding CT476828.2 3 +5268 KQ983257.1 ENSEMBL gene 200222 201493 1272.0 + 0 ENSG00000283949.2 protein_coding CT476828.9 3 +5269 KQ983257.1 HAVANA gene 221617 221857 241.0 - 0 ENSG00000283223.1 processed_pseudogene AC215524.2 2 OTTHUMG00000191474.1 +5270 KQ983257.1 HAVANA gene 221606 222069 464.0 + 0 ENSG00000283660.1 processed_pseudogene RPL23AP84 2 OTTHUMG00000179679.1 +5271 KQ983258.1 HAVANA gene 33718 56134 1707.0 + 0 ENSG00000283630.1 protein_coding FRG1 2 OTTHUMG00000160202.24 +5272 KQ983258.1 HAVANA gene 66529 66777 249.0 - 0 ENSG00000283397.1 processed_pseudogene MLLT10P2 2 OTTHUMG00000161001.1 +5273 KQ983258.1 HAVANA gene 72832 75309 889.0 + 0 ENSG00000283437.1 processed_pseudogene AF146191.5 2 OTTHUMG00000185262.3 +5274 KQ983258.1 HAVANA gene 75453 77801 1305.0 - 0 ENSG00000283655.1 unprocessed_pseudogene TUBB7P 2 OTTHUMG00000161002.1 +5275 KQ983258.1 ENSEMBL gene 107730 107847 118.0 + 0 ENSG00000283308.1 rRNA_pseudogene RNA5SP174 3 +5276 KQ983258.1 ENSEMBL gene 110290 110408 119.0 + 0 ENSG00000283282.1 rRNA_pseudogene RNA5SP175 3 +5277 KQ983258.1 HAVANA gene 114008 115266 1259.0 - 0 ENSG00000283184.1 unprocessed_pseudogene DUX4L9 2 OTTHUMG00000161003.2 +5278 KQ983258.1 ENSEMBL gene 116955 119843 2082.0 - 0 ENSG00000285202.1 protein_coding FRG2 3 +5279 KQ983258.1 HAVANA gene 130673 131156 484.0 - 0 ENSG00000283250.1 processed_pseudogene RARRES2P4 2 OTTHUMG00000160173.1 +5280 KQ983258.1 HAVANA gene 160550 161824 1275.0 + 0 ENSG00000283570.1 unprocessed_pseudogene DUX4L8 2 OTTHUMG00000161320.5 +5281 KQ983258.1 ENSEMBL gene 163856 165127 1272.0 + 0 ENSG00000284475.2 protein_coding CT476828.20 3 +5282 KQ983258.1 ENSEMBL gene 167162 168433 1272.0 + 0 ENSG00000284002.2 protein_coding CT476828.11 3 +5283 KQ983258.1 ENSEMBL gene 170468 171739 1272.0 + 0 ENSG00000283830.2 protein_coding CT476828.3 3 +5284 KQ983258.1 ENSEMBL gene 173774 175045 1272.0 + 0 ENSG00000283898.2 protein_coding CT476828.8 3 +5285 KQ983258.1 ENSEMBL gene 177080 178351 1272.0 + 0 ENSG00000284502.2 protein_coding CT476828.22 3 +5286 KQ983258.1 ENSEMBL gene 180386 181657 1272.0 + 0 ENSG00000283893.2 protein_coding CT476828.7 3 +5287 KQ983258.1 ENSEMBL gene 183692 184963 1272.0 + 0 ENSG00000284156.2 protein_coding CT476828.14 3 +5288 KQ983258.1 ENSEMBL gene 186998 188269 1272.0 + 0 ENSG00000284507.2 protein_coding CT476828.23 3 +5289 KQ983258.1 ENSEMBL gene 190304 191575 1272.0 + 0 ENSG00000284066.2 protein_coding CT476828.13 3 +5290 KQ983258.1 ENSEMBL gene 193610 194881 1272.0 + 0 ENSG00000284174.2 protein_coding CT476828.15 3 +5291 KQ983258.1 ENSEMBL gene 196916 198187 1272.0 + 0 ENSG00000283834.2 protein_coding CT476828.4 3 +5292 KQ983258.1 ENSEMBL gene 200222 201493 1272.0 + 0 ENSG00000284298.2 protein_coding HM190170.1 3 +5293 KV575243.1 ENSEMBL gene 40658 46457 369.0 + 0 ENSG00000283963.2 protein_coding AC270107.1 3 +5294 KV575243.1 HAVANA gene 63052 64212 1161.0 + 0 ENSG00000284420.1 TEC AC270107.7 2 OTTHUMG00000186588.1 overlapping_locus +5295 KV575243.1 ENSEMBL gene 60939 66737 369.0 + 0 ENSG00000284036.2 protein_coding GUSBP1 3 +5296 KV575243.1 ENSEMBL gene 80416 86218 369.0 + 0 ENSG00000283989.2 protein_coding AC270107.2 3 +5297 KV575243.1 ENSEMBL gene 100703 106503 369.0 + 0 ENSG00000284287.2 protein_coding AC270107.6 3 +5298 KV575243.1 ENSEMBL gene 110890 112980 1260.0 - 0 ENSG00000284434.2 protein_coding AC270107.8 3 +5299 KV575243.1 ENSEMBL gene 120178 125986 369.0 + 0 ENSG00000284230.2 protein_coding AC270107.5 3 +5300 KV575243.1 ENSEMBL gene 140481 146274 369.0 + 0 ENSG00000284151.2 protein_coding AC270107.4 3 +5301 KV575243.1 HAVANA gene 218895 219185 291.0 + 0 ENSG00000284072.1 lincRNA AC270107.3 2 OTTHUMG00000185450.1 overlapping_locus +5302 KV575244.1 HAVANA gene 142238 143468 624.0 - 0 ENSG00000284358.1 lincRNA AC109479.5 2 OTTHUMG00000163595.1 +5303 KV575244.1 HAVANA gene 142212 143572 360.0 + 0 ENSG00000284315.1 lincRNA AC109479.4 2 OTTHUMG00000163594.1 +5304 KV575244.1 HAVANA gene 150526 150699 174.0 - 0 ENSG00000284579.1 processed_pseudogene AC109479.6 2 OTTHUMG00000163597.2 +5305 KV575244.1 HAVANA gene 220001 220681 561.0 + 0 ENSG00000284494.1 lincRNA AC270306.4 2 OTTHUMG00000163201.1 +5306 KV575244.1 ENSEMBL gene 256722 256803 82.0 - 0 ENSG00000283939.1 snRNA RF00015 3 +5307 KV575244.1 HAVANA gene 267961 280237 535.0 - 0 ENSG00000283896.1 lincRNA AC270306.2 2 OTTHUMG00000163567.1 +5308 KV575244.1 HAVANA gene 286959 289575 1142.0 + 0 ENSG00000284549.1 unprocessed_pseudogene AC270306.5 2 OTTHUMG00000163210.2 +5309 KV575244.1 HAVANA gene 291727 292016 290.0 - 0 ENSG00000284124.1 processed_pseudogene AC270306.3 2 OTTHUMG00000163568.1 +5310 KV575244.1 HAVANA gene 336799 337384 586.0 + 0 ENSG00000284556.1 processed_pseudogene PRDX2P3 2 OTTHUMG00000163176.2 overlapping_locus +5311 KV575244.1 HAVANA gene 362178 370002 1966.0 - 0 ENSG00000283808.1 antisense AC270306.1 2 OTTHUMG00000163175.1 +5312 KV575244.1 HAVANA gene 315200 376287 5911.0 + 0 ENSG00000284260.1 protein_coding RUFY1 2 OTTHUMG00000130913.10 overlapping_locus +5313 KV575244.1 ENSEMBL gene 381118 389408 1493.0 - 0 ENSG00000284254.2 protein_coding HNRNPH1 3 +5314 KV575244.1 ENSEMBL gene 395439 395698 260.0 + 0 ENSG00000284069.1 misc_RNA RF00017 3 +5315 KV575244.1 HAVANA gene 406317 407490 951.0 - 0 ENSG00000284506.1 unprocessed_pseudogene AC270227.1 2 OTTHUMG00000187266.2 +5316 KV575244.1 ENSEMBL gene 413743 416270 1059.0 + 0 ENSG00000284445.2 protein_coding C5orf60 3 +5317 KV575244.1 HAVANA gene 444274 446666 785.0 - 0 ENSG00000283718.1 protein_coding CBY3 2 OTTHUMG00000163163.2 +5318 KV575244.1 HAVANA gene 444723 460328 825.0 + 0 ENSG00000284207.1 transcribed_processed_pseudogene HMGB3P22 2 OTTHUMG00000163166.2 overlapping_locus +5319 KV575244.1 HAVANA gene 444319 496505 6235.0 + 0 ENSG00000283777.1 protein_coding CANX 2 OTTHUMG00000130910.12 overlapping_locus +5320 KV575244.1 HAVANA gene 498430 542880 5942.0 + 0 ENSG00000283780.2 protein_coding MAML1 2 OTTHUMG00000163237.3 overlapping_locus +5321 KV575244.1 HAVANA gene 559557 562224 1192.0 + 0 ENSG00000283887.1 protein_coding LTC4S 2 OTTHUMG00000150314.5 overlapping_locus +5322 KV575244.1 ENSEMBL gene 563851 563919 69.0 - 0 ENSG00000283912.1 miRNA MIR1229 3 +5323 KV575244.1 HAVANA gene 563170 572521 5495.0 - 0 ENSG00000284501.1 protein_coding MGAT4B 2 OTTHUMG00000130912.6 ncRNA_host +5324 KV575244.1 ENSEMBL gene 586497 602214 1148.0 + 0 ENSG00000284099.2 protein_coding AC008393.2 3 +5325 KV575244.1 ENSEMBL gene 611392 611712 321.0 + 0 ENSG00000284026.1 misc_RNA RN7SKP150 3 +5326 KV575244.1 ENSEMBL gene 612595 612690 96.0 - 0 ENSG00000284437.1 misc_RNA RF00019 3 +5327 KV575244.1 HAVANA gene 624573 626843 1454.0 + 0 ENSG00000284274.1 lincRNA AC008393.3 2 OTTHUMG00000163262.1 +5328 KV575244.1 HAVANA gene 600693 627733 8496.0 - 0 ENSG00000283918.1 protein_coding MRNIP 2 OTTHUMG00000163490.7 ncRNA_host,overlapping_locus +5329 KV575245.1 HAVANA gene 991 10231 3860.0 + 0 ENSG00000283781.1 protein_coding TNK1 2 OTTHUMG00000178174.5 +5330 KV575245.1 HAVANA gene 10184 15300 2834.0 - 0 ENSG00000284009.1 protein_coding PLSCR3 2 OTTHUMG00000178169.5 overlapping_locus +5331 KV575245.1 HAVANA gene 10191 24554 2557.0 - 0 ENSG00000284483.1 protein_coding TMEM256-PLSCR3 2 OTTHUMG00000178150.4 overlapping_locus +5332 KV575245.1 HAVANA gene 23432 24594 707.0 - 0 ENSG00000283771.1 protein_coding TMEM256 2 OTTHUMG00000132900.3 overlapping_locus +5333 KV575245.1 HAVANA gene 25331 40317 5550.0 + 0 ENSG00000283859.1 protein_coding NLGN2 2 OTTHUMG00000108138.3 +5334 KV575245.1 HAVANA gene 40817 42089 982.0 + 0 ENSG00000284598.1 protein_coding SPEM1 2 OTTHUMG00000178189.1 overlapping_locus +5335 KV575245.1 HAVANA gene 46072 48025 1651.0 + 0 ENSG00000283714.1 protein_coding SPEM2 2 OTTHUMG00000178190.2 overlapping_locus +5336 KV575245.1 HAVANA gene 49320 53219 3631.0 + 0 ENSG00000284090.2 protein_coding SPEM3 2 OTTHUMG00000191681.2 +5337 KV575245.1 HAVANA gene 57014 57980 327.0 - 0 ENSG00000283895.1 antisense AC113189.6 2 OTTHUMG00000178213.1 +5338 KV575245.1 HAVANA gene 55900 58136 2129.0 + 0 ENSG00000284228.1 protein_coding TMEM102 2 OTTHUMG00000132901.1 overlapping_locus +5339 KV575245.1 HAVANA gene 59616 63784 330.0 - 0 ENSG00000284222.1 antisense AC113189.8 2 OTTHUMG00000178214.1 +5340 KV575245.1 HAVANA gene 40560 64538 1975.0 + 0 ENSG00000283843.1 processed_transcript AC113189.5 2 OTTHUMG00000178212.1 overlapping_locus +5341 KV575245.1 HAVANA gene 58730 65394 5565.0 + 0 ENSG00000283903.1 protein_coding FGF11 2 OTTHUMG00000108136.4 overlapping_locus +5342 KV575245.1 HAVANA gene 59963 66423 5553.0 + 0 ENSG00000284115.1 processed_transcript AC113189.7 2 OTTHUMG00000186449.1 overlapping_locus +5343 KV575245.1 HAVANA gene 65518 78164 4329.0 + 0 ENSG00000283946.1 protein_coding CHRNB1 2 OTTHUMG00000108139.4 overlapping_locus +5344 KV575245.1 HAVANA gene 101789 103953 1697.0 + 0 ENSG00000284515.1 protein_coding SLC35G6 2 OTTHUMG00000187017.1 +5345 KV575245.1 HAVANA gene 79823 104720 6126.0 - 0 ENSG00000283868.1 protein_coding ZBTB4 2 OTTHUMG00000108137.4 +5346 KV575245.1 ENSEMBL gene 105222 134631 5910.0 + 0 ENSG00000284832.1 protein_coding POLR2A 3 +5347 KV575246.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000283872.1 unprocessed_pseudogene AC245128.21 2 OTTHUMG00000102121.1 +5348 KV575246.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000283942.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5349 KV575246.1 HAVANA gene 26103 38166 1691.0 + 0 ENSG00000284104.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5350 KV575246.1 HAVANA gene 40144 54670 1590.0 + 0 ENSG00000284504.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5351 KV575246.1 ENSEMBL gene 57731 69001 1011.0 + 0 ENSG00000283722.2 protein_coding KP420439.1 3 +5352 KV575246.1 HAVANA gene 71444 85955 1674.0 + 0 ENSG00000283723.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5353 KV575246.1 HAVANA gene 87988 91951 628.0 + 0 ENSG00000284105.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5354 KV575246.1 HAVANA gene 26120 99918 1294.0 + 0 ENSG00000283962.1 processed_transcript KP420439.2 2 OTTHUMG00000065883.2 overlapping_locus +5355 KV575246.1 HAVANA gene 105167 116152 1724.0 + 0 ENSG00000283961.1 protein_coding KIR2DL4 2 OTTHUMG00000065880.6 +5356 KV575246.1 HAVANA gene 118103 132434 1871.0 + 0 ENSG00000283954.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5357 KV575246.1 HAVANA gene 134332 150012 1608.0 + 0 ENSG00000284307.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000065932.6 +5358 KV575247.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000283916.1 unprocessed_pseudogene AC245128.23 2 OTTHUMG00000102121.1 +5359 KV575247.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284051.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5360 KV575247.1 HAVANA gene 26103 38157 1691.0 + 0 ENSG00000283875.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5361 KV575247.1 HAVANA gene 40136 54693 1590.0 + 0 ENSG00000284132.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5362 KV575247.1 HAVANA gene 56663 69009 1331.0 + 0 ENSG00000284497.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5363 KV575247.1 HAVANA gene 71452 85962 1674.0 + 0 ENSG00000284514.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5364 KV575247.1 HAVANA gene 87995 91958 628.0 + 0 ENSG00000283919.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5365 KV575247.1 HAVANA gene 26120 99926 1294.0 + 0 ENSG00000283910.1 processed_transcript AC245128.22 2 OTTHUMG00000065883.2 overlapping_locus +5366 KV575247.1 HAVANA gene 105178 116160 1724.0 + 0 ENSG00000284365.1 protein_coding KIR2DL4 2 OTTHUMG00000065880.6 +5367 KV575247.1 HAVANA gene 118111 132421 1871.0 + 0 ENSG00000284426.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5368 KV575247.1 HAVANA gene 134319 150212 1608.0 + 0 ENSG00000283727.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000065932.6 +5369 KV575247.1 HAVANA gene 152086 168847 1877.0 + 0 ENSG00000284295.1 protein_coding KIR3DL2 2 OTTHUMG00000065935.1 +5370 KV575248.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284326.1 unprocessed_pseudogene AC245128.31 2 OTTHUMG00000102121.1 +5371 KV575248.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284141.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5372 KV575248.1 HAVANA gene 26112 38130 1691.0 + 0 ENSG00000283823.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5373 KV575248.1 HAVANA gene 40109 54661 1590.0 + 0 ENSG00000283996.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5374 KV575248.1 HAVANA gene 56632 68978 1331.0 + 0 ENSG00000284088.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5375 KV575248.1 HAVANA gene 71421 85930 1674.0 + 0 ENSG00000284530.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5376 KV575248.1 HAVANA gene 87962 91925 628.0 + 0 ENSG00000283974.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5377 KV575248.1 HAVANA gene 26129 99892 1294.0 + 0 ENSG00000284322.1 processed_transcript KU645195.1 2 OTTHUMG00000065883.2 overlapping_locus +5378 KV575248.1 HAVANA gene 105131 116154 1724.0 + 0 ENSG00000284509.1 protein_coding KIR2DL4 2 OTTHUMG00000065880.6 +5379 KV575248.1 HAVANA gene 118105 132416 1871.0 + 0 ENSG00000284177.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5380 KV575248.1 HAVANA gene 134314 150206 1608.0 + 0 ENSG00000284408.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000065932.6 +5381 KV575249.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284164.1 unprocessed_pseudogene AC245128.27 2 OTTHUMG00000102121.1 +5382 KV575249.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284374.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5383 KV575249.1 HAVANA gene 26103 38126 1691.0 + 0 ENSG00000283966.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5384 KV575249.1 HAVANA gene 40103 54630 1590.0 + 0 ENSG00000283790.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5385 KV575249.1 HAVANA gene 56601 68949 1331.0 + 0 ENSG00000284533.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5386 KV575249.1 ENSEMBL gene 87952 99574 984.0 + 0 ENSG00000284169.2 protein_coding KU645196.4 3 +5387 KV575249.1 ENSEMBL gene 105250 115715 1131.0 + 0 ENSG00000283902.2 protein_coding KU645196.1 3 +5388 KV575249.1 ENSEMBL gene 118108 160298 3149.0 + 0 ENSG00000284301.2 protein_coding KIR2DL5B 3 +5389 KV575249.1 ENSEMBL gene 177765 191731 1044.0 + 0 ENSG00000284016.2 protein_coding KU645196.2 3 +5390 KV575249.1 HAVANA gene 194276 198239 628.0 + 0 ENSG00000283968.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5391 KV575249.1 ENSEMBL gene 210661 221126 1131.0 + 0 ENSG00000283784.2 protein_coding KIR2DL4 3 +5392 KV575249.1 ENSEMBL gene 223519 265888 3149.0 + 0 ENSG00000283889.2 protein_coding KIR3DS1 3 +5393 KV575249.1 ENSEMBL gene 268523 282348 912.0 + 0 ENSG00000284120.2 protein_coding KU645196.3 3 +5394 KV575250.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284183.1 unprocessed_pseudogene AC245128.28 2 OTTHUMG00000102121.1 +5395 KV575250.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284030.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5396 KV575250.1 HAVANA gene 40136 54660 1590.0 + 0 ENSG00000284510.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5397 KV575250.1 HAVANA gene 71421 85932 1674.0 + 0 ENSG00000284401.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5398 KV575250.1 HAVANA gene 87965 91928 628.0 + 0 ENSG00000283713.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5399 KV575250.1 HAVANA gene 26120 99894 1294.0 + 0 ENSG00000284304.1 processed_transcript AC245128.30 2 OTTHUMG00000065883.2 overlapping_locus +5400 KV575250.1 ENSEMBL gene 105269 115734 1131.0 + 0 ENSG00000284562.2 protein_coding KIR2DL4 3 +5401 KV575250.1 ENSEMBL gene 118128 160497 3149.0 + 0 ENSG00000284111.2 protein_coding KIR3DS1 3 +5402 KV575250.1 ENSEMBL gene 163173 176998 912.0 + 0 ENSG00000283937.2 protein_coding KU645197.1 3 +5403 KV575250.1 HAVANA gene 179497 196283 1877.0 + 0 ENSG00000284466.1 protein_coding KIR3DL2 2 OTTHUMG00000065935.1 +5404 KV575250.1 ENSEMBL gene 198015 198121 107.0 - 0 ENSG00000284524.1 snRNA RNU6-222P 3 +5405 KV575250.1 HAVANA gene 203321 219545 2366.0 + 0 ENSG00000283750.1 protein_coding FCAR 2 OTTHUMG00000065936.7 +5406 KV575250.1 HAVANA gene 219746 220493 748.0 + 0 ENSG00000283739.1 lincRNA AC245128.17 2 OTTHUMG00000183033.1 +5407 KV575251.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000283748.1 unprocessed_pseudogene AC245128.18 2 OTTHUMG00000102121.1 +5408 KV575251.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284314.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5409 KV575251.1 HAVANA gene 26109 38123 1691.0 + 0 ENSG00000284480.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5410 KV575251.1 HAVANA gene 40103 54648 1590.0 + 0 ENSG00000284236.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5411 KV575251.1 HAVANA gene 56619 68965 1331.0 + 0 ENSG00000284232.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5412 KV575251.1 HAVANA gene 71408 85917 1674.0 + 0 ENSG00000284551.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5413 KV575251.1 HAVANA gene 87950 91913 628.0 + 0 ENSG00000284006.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5414 KV575251.1 HAVANA gene 26126 99880 1294.0 + 0 ENSG00000283901.1 processed_transcript KP420442.1 2 OTTHUMG00000065883.2 overlapping_locus +5415 KV575251.1 ENSEMBL gene 105235 115734 1131.0 + 0 ENSG00000284206.2 protein_coding KIR2DL4 3 +5416 KV575251.1 HAVANA gene 118094 132407 1871.0 + 0 ENSG00000284589.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5417 KV575251.1 ENSEMBL gene 134394 149591 912.0 + 0 ENSG00000284264.2 protein_coding KIR2DS4 3 +5418 KV575252.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284348.1 unprocessed_pseudogene AC245128.32 2 OTTHUMG00000102121.1 +5419 KV575252.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284097.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5420 KV575252.1 HAVANA gene 56430 68780 1331.0 + 0 ENSG00000284249.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5421 KV575252.1 HAVANA gene 71224 85742 1674.0 + 0 ENSG00000284100.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5422 KV575252.1 HAVANA gene 87775 91734 628.0 + 0 ENSG00000284119.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5423 KV575252.1 HAVANA gene 26120 99701 1294.0 + 0 ENSG00000284136.1 processed_transcript AC245128.26 2 OTTHUMG00000065883.2 overlapping_locus +5424 KV575252.1 ENSEMBL gene 105058 115557 1131.0 + 0 ENSG00000283986.2 protein_coding KIR2DL4 3 +5425 KV575252.1 HAVANA gene 117918 132231 1871.0 + 0 ENSG00000283729.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5426 KV575252.1 ENSEMBL gene 134218 148536 912.0 + 0 ENSG00000283870.2 protein_coding KIR2DS4 3 +5427 KV575252.1 HAVANA gene 151039 167809 1877.0 + 0 ENSG00000284213.1 protein_coding KIR3DL2 2 OTTHUMG00000065935.1 +5428 KV575252.1 ENSEMBL gene 169541 169647 107.0 - 0 ENSG00000284545.1 snRNA RNU6-222P 3 +5429 KV575253.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284472.1 unprocessed_pseudogene AC245128.36 2 OTTHUMG00000102121.1 +5430 KV575253.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284405.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5431 KV575253.1 HAVANA gene 26109 38124 1691.0 + 0 ENSG00000283915.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5432 KV575253.1 HAVANA gene 40101 54619 1590.0 + 0 ENSG00000283708.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5433 KV575253.1 HAVANA gene 56590 68938 1331.0 + 0 ENSG00000284248.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5434 KV575253.1 HAVANA gene 71378 85890 1674.0 + 0 ENSG00000284145.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5435 KV575253.1 HAVANA gene 87923 91886 628.0 + 0 ENSG00000284102.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5436 KV575253.1 HAVANA gene 26126 99853 1294.0 + 0 ENSG00000283778.1 processed_transcript KP420438.1 2 OTTHUMG00000065883.2 overlapping_locus +5437 KV575253.1 HAVANA gene 105093 116116 1724.0 + 0 ENSG00000283869.1 protein_coding KIR2DL4 2 OTTHUMG00000065880.6 +5438 KV575253.1 HAVANA gene 118067 132378 1871.0 + 0 ENSG00000283731.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5439 KV575253.1 HAVANA gene 134276 150168 1608.0 + 0 ENSG00000283779.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000065932.6 +5440 KV575254.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284355.1 unprocessed_pseudogene AC245128.33 2 OTTHUMG00000102121.1 +5441 KV575254.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000283800.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5442 KV575254.1 HAVANA gene 26109 38123 1691.0 + 0 ENSG00000284086.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5443 KV575254.1 HAVANA gene 40102 54640 1590.0 + 0 ENSG00000283702.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5444 KV575254.1 HAVANA gene 56611 68959 1331.0 + 0 ENSG00000283832.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5445 KV575254.1 ENSEMBL gene 91329 91435 107.0 - 0 ENSG00000284451.1 snRNA RNU6-222P 3 +5446 KV575255.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284296.1 unprocessed_pseudogene AC245128.29 2 OTTHUMG00000102121.1 +5447 KV575255.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284593.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5448 KV575255.1 HAVANA gene 26103 38159 1691.0 + 0 ENSG00000284371.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5449 KV575255.1 HAVANA gene 40137 54659 1590.0 + 0 ENSG00000284333.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5450 KV575255.1 HAVANA gene 56630 68978 1331.0 + 0 ENSG00000283725.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5451 KV575255.1 HAVANA gene 71418 85929 1674.0 + 0 ENSG00000284347.1 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +5452 KV575255.1 HAVANA gene 87962 91925 628.0 + 0 ENSG00000284397.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5453 KV575255.1 HAVANA gene 26120 99892 1294.0 + 0 ENSG00000284423.1 processed_transcript AC245128.34 2 OTTHUMG00000065883.2 overlapping_locus +5454 KV575255.1 HAVANA gene 105131 116154 1724.0 + 0 ENSG00000284460.1 protein_coding KIR2DL4 2 OTTHUMG00000065880.6 +5455 KV575255.1 HAVANA gene 118105 132416 1871.0 + 0 ENSG00000283827.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5456 KV575255.1 HAVANA gene 134314 150206 1608.0 + 0 ENSG00000283846.1 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000065932.6 +5457 KV575256.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284563.1 unprocessed_pseudogene AC245128.37 2 OTTHUMG00000102121.1 +5458 KV575256.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000283794.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5459 KV575256.1 ENSEMBL gene 26124 39942 1053.0 + 0 ENSG00000284511.2 protein_coding KP420440.3 3 +5460 KV575256.1 ENSEMBL gene 42307 56251 1044.0 + 0 ENSG00000283716.2 protein_coding KIR2DL2 3 +5461 KV575256.1 ENSEMBL gene 58796 67805 1125.0 + 0 ENSG00000284089.2 protein_coding KP420440.1 3 +5462 KV575256.1 ENSEMBL gene 70212 84366 912.0 + 0 ENSG00000284039.2 protein_coding KIR2DS3 3 +5463 KV575256.1 HAVANA gene 87000 99350 1331.0 + 0 ENSG00000283860.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5464 KV575256.1 ENSEMBL gene 101833 115799 1044.0 + 0 ENSG00000284580.2 protein_coding KP420440.4 3 +5465 KV575256.1 HAVANA gene 118344 122303 628.0 + 0 ENSG00000284417.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5466 KV575256.1 ENSEMBL gene 135636 146101 1131.0 + 0 ENSG00000284457.2 protein_coding KIR2DL4 3 +5467 KV575256.1 ENSEMBL gene 148495 190684 3149.0 + 0 ENSG00000283719.2 protein_coding KIR3DS1 3 +5468 KV575256.1 ENSEMBL gene 193319 207144 912.0 + 0 ENSG00000284150.2 protein_coding KP420440.2 3 +5469 KV575257.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000284133.1 unprocessed_pseudogene AC245128.25 2 OTTHUMG00000102121.1 +5470 KV575257.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000283732.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5471 KV575257.1 HAVANA gene 40120 54642 1590.0 + 0 ENSG00000284044.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5472 KV575257.1 HAVANA gene 56613 68969 1331.0 + 0 ENSG00000284478.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5473 KV575257.1 ENSEMBL gene 74933 77059 597.0 + 0 ENSG00000283763.2 protein_coding KU645198.1 3 +5474 KV575257.1 ENSEMBL gene 90063 90169 107.0 - 0 ENSG00000284022.1 snRNA RNU6-222P 3 +5475 KV575258.1 HAVANA gene 20566 21313 748.0 - 0 ENSG00000283925.1 lincRNA AC245128.24 2 OTTHUMG00000183033.1 +5476 KV575258.1 HAVANA gene 21514 37738 2366.0 - 0 ENSG00000284061.1 protein_coding FCAR 2 OTTHUMG00000065936.7 +5477 KV575258.1 ENSEMBL gene 42941 43047 107.0 + 0 ENSG00000284303.1 snRNA RNU6-222P 3 +5478 KV575258.1 HAVANA gene 44779 61569 1877.0 - 0 ENSG00000284528.1 protein_coding KIR3DL2 2 OTTHUMG00000065935.1 +5479 KV575258.1 ENSEMBL gene 64076 77901 912.0 - 0 ENSG00000284560.2 protein_coding KIR2DS1 3 +5480 KV575258.1 ENSEMBL gene 80536 94868 912.0 - 0 ENSG00000284217.2 protein_coding KP420441.3 3 +5481 KV575258.1 ENSEMBL gene 97275 106288 1125.0 - 0 ENSG00000283742.2 protein_coding KP420441.1 3 +5482 KV575258.1 ENSEMBL gene 108841 122829 1044.0 - 0 ENSG00000284225.2 protein_coding KIR2DL2 3 +5483 KV575258.1 ENSEMBL gene 125192 153039 1053.0 - 0 ENSG00000284033.2 protein_coding KP420441.2 3 +5484 KV575259.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000283810.1 unprocessed_pseudogene AC245128.19 2 OTTHUMG00000102121.1 +5485 KV575259.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000284339.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5486 KV575259.1 HAVANA gene 26103 38156 1691.0 + 0 ENSG00000284127.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +5487 KV575259.1 HAVANA gene 40135 54681 1590.0 + 0 ENSG00000284241.1 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +5488 KV575259.1 HAVANA gene 56652 68998 1331.0 + 0 ENSG00000284313.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +5489 KV575259.1 HAVANA gene 87925 91888 628.0 + 0 ENSG00000284007.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +5490 KV575259.1 HAVANA gene 26120 99855 1294.0 + 0 ENSG00000284441.1 processed_transcript AC245128.35 2 OTTHUMG00000065883.2 overlapping_locus +5491 KV575259.1 ENSEMBL gene 105210 115709 1131.0 + 0 ENSG00000284340.2 protein_coding KIR2DL4 3 +5492 KV575259.1 HAVANA gene 118070 132383 1871.0 + 0 ENSG00000284093.1 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5493 KV575259.1 ENSEMBL gene 134370 149567 912.0 + 0 ENSG00000283882.2 protein_coding KIR2DS4 3 +5494 KV575259.1 HAVANA gene 152069 168819 1877.0 + 0 ENSG00000284192.1 protein_coding KIR3DL2 2 OTTHUMG00000065935.1 +5495 KV575259.1 ENSEMBL gene 170551 170657 107.0 - 0 ENSG00000284279.1 snRNA RNU6-222P 3 +5496 KV575260.1 HAVANA gene 5576 5859 284.0 + 0 ENSG00000283833.1 unprocessed_pseudogene AC245128.20 2 OTTHUMG00000102121.1 +5497 KV575260.1 HAVANA gene 9540 15077 2127.0 + 0 ENSG00000283983.1 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +5498 KV575260.1 ENSEMBL gene 56333 70327 1044.0 + 0 ENSG00000284555.2 protein_coding KIR2DL2 3 +5499 KV575260.1 HAVANA gene 26126 86275 1294.0 + 0 ENSG00000284318.2 processed_transcript KP420444.1 2 OTTHUMG00000065883.2 overlapping_locus +5500 KV575260.1 HAVANA gene 91525 102507 1724.0 + 0 ENSG00000284013.2 protein_coding KIR2DL4 2 OTTHUMG00000065880.6 +5501 KV575260.1 HAVANA gene 104458 118768 1871.0 + 0 ENSG00000284342.2 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +5502 KV575260.1 HAVANA gene 120666 136559 1608.0 + 0 ENSG00000284244.2 polymorphic_pseudogene KIR2DS4 2 OTTHUMG00000065932.6 +5503 KV766192.1 HAVANA gene 5235 6692 1458.0 - 0 ENSG00000284109.1 unprocessed_pseudogene CDYLP1 2 OTTHUMG00000155460.1 overlapping_locus +5504 KV766192.1 HAVANA gene 476 9969 411.0 - 0 ENSG00000284345.1 lincRNA AC091493.2 2 OTTHUMG00000155461.2 overlapping_locus +5505 KV766192.1 ENSEMBL gene 245664 245728 65.0 + 0 ENSG00000283960.1 miRNA MIR3714 3 +5506 KV766192.1 ENSEMBL gene 292001 292372 372.0 + 0 ENSG00000284599.2 protein_coding AC091491.1 3 +5507 KV766192.1 HAVANA gene 355210 356660 311.0 - 0 ENSG00000284477.1 antisense PLCL2-AS1 2 OTTHUMG00000155466.2 +5508 KV766192.1 HAVANA gene 115141 403062 5146.0 + 0 ENSG00000284017.1 protein_coding PLCL2 2 OTTHUMG00000155467.5 ncRNA_host +5509 KV766193.1 HAVANA gene 163609 165227 1619.0 + 0 ENSG00000284467.1 antisense AC079298.6 2 OTTHUMG00000189144.1 +5510 KV766193.1 HAVANA gene 189364 189822 459.0 + 0 ENSG00000283841.1 antisense AC079298.4 2 OTTHUMG00000189145.1 +5511 KV766193.1 HAVANA gene 62660 226448 1376.0 + 0 ENSG00000283917.1 antisense AC079298.5 2 OTTHUMG00000189143.1 +5512 KV766193.1 HAVANA gene 301515 301976 462.0 + 0 ENSG00000283957.1 processed_pseudogene AC110775.2 2 OTTHUMG00000161555.1 +5513 KV766195.1 HAVANA gene 23101 24163 1063.0 - 0 ENSG00000284255.1 protein_coding OR4C12 2 OTTHUMG00000166687.1 +5514 KV766195.1 HAVANA gene 60426 61323 898.0 + 0 ENSG00000284278.1 unprocessed_pseudogene OR4C48P 2 OTTHUMG00000191880.1 +5515 KV766195.1 HAVANA gene 95036 95935 900.0 - 0 ENSG00000284123.1 unprocessed_pseudogene OR4C49P 2 OTTHUMG00000175624.1 +5516 KV766196.1 HAVANA gene 1831 11386 1323.0 - 0 ENSG00000284189.1 antisense AC141424.2 2 OTTHUMG00000132132.5 +5517 KV766196.1 HAVANA gene 7690 28425 2710.0 + 0 ENSG00000283985.1 protein_coding C17orf97 2 OTTHUMG00000132479.6 +5518 KV766196.1 HAVANA gene 37341 43302 3621.0 - 0 ENSG00000283979.1 protein_coding RFLNB 2 OTTHUMG00000132483.1 +5519 KV766196.1 HAVANA gene 62648 70824 493.0 + 0 ENSG00000284165.1 antisense AC015853.5 2 OTTHUMG00000177479.1 +5520 KV766196.1 HAVANA gene 82617 100053 478.0 + 0 ENSG00000284075.1 antisense AC015853.4 2 OTTHUMG00000177482.1 +5521 KV766196.1 HAVANA gene 112043 112894 592.0 + 0 ENSG00000284323.1 antisense AC015853.6 2 OTTHUMG00000177480.1 +5522 KV766196.1 ENSEMBL gene 158678 159049 372.0 - 0 ENSG00000285073.1 protein_coding AC027455.4 3 +5523 KV766196.1 HAVANA gene 175479 176072 594.0 + 0 ENSG00000284390.1 processed_pseudogene AC027455.3 2 OTTHUMG00000177456.2 +5524 KV766196.1 ENSEMBL gene 196455 196680 225.0 + 0 ENSG00000284056.2 pseudogene AC027455.2 3 +5525 KV766196.1 HAVANA gene 216271 217024 754.0 - 0 ENSG00000284153.1 processed_pseudogene RPS4XP17 2 OTTHUMG00000157647.1 overlapping_locus +5526 KV766196.1 HAVANA gene 68145 281194 20899.0 - 0 ENSG00000283883.1 protein_coding VPS53 2 OTTHUMG00000177441.11 overlapping_locus +5527 KV766197.1 ENSEMBL gene 230827 231656 828.0 + 0 ENSG00000285235.1 pseudogene AC024918.1 3 +5528 KV766198.1 HAVANA gene 5210 19290 6465.0 - 0 ENSG00000284571.1 protein_coding FLII 2 OTTHUMG00000059389.10 +5529 KV766198.1 HAVANA gene 20908 26926 3969.0 + 0 ENSG00000284495.1 protein_coding MIEF2 2 OTTHUMG00000059392.4 +5530 KV766198.1 HAVANA gene 28454 29202 749.0 + 0 ENSG00000284449.1 antisense AC127537.4 2 OTTHUMG00000175974.1 +5531 KV766198.1 HAVANA gene 72278 73025 748.0 + 0 ENSG00000284212.1 processed_pseudogene RPL7AP65 2 OTTHUMG00000059393.1 +5532 KV766198.1 HAVANA gene 73134 73907 465.0 + 0 ENSG00000283753.1 processed_pseudogene RPL21P121 2 OTTHUMG00000059395.2 +5533 KV766198.1 HAVANA gene 31802 75381 6476.0 - 0 ENSG00000284238.1 protein_coding TOP3A 2 OTTHUMG00000059391.7 +5534 KV766198.1 HAVANA gene 75684 88429 8279.0 + 0 ENSG00000283741.1 protein_coding SMCR8 2 OTTHUMG00000059394.4 +5535 KV766198.1 ENSEMBL gene 101188 101260 73.0 - 0 ENSG00000284492.1 miRNA MIR6778 3 +5536 KV766198.1 ENSEMBL gene 108621 109046 375.0 - 0 ENSG00000284001.2 protein_coding AC127537.2 3 +5537 KV766198.1 ENSEMBL gene 107889 116372 384.0 - 0 ENSG00000284320.2 protein_coding AC127537.3 3 +5538 KV766198.1 HAVANA gene 149834 158963 4955.0 - 0 ENSG00000284566.1 antisense AL353997.10 2 OTTHUMG00000179473.1 +5539 KV766198.1 HAVANA gene 158850 159438 589.0 + 0 ENSG00000284422.1 processed_pseudogene AL353997.8 2 OTTHUMG00000179891.1 overlapping_locus +5540 KV766198.1 HAVANA gene 147641 159626 2156.0 + 0 ENSG00000284166.1 protein_coding EVPLL 2 OTTHUMG00000059095.2 overlapping_locus +5541 KV766198.1 HAVANA gene 160132 160302 171.0 - 0 ENSG00000284444.1 unprocessed_pseudogene AL353997.9 2 OTTHUMG00000187939.1 +5542 KV766198.1 HAVANA gene 163459 170940 1075.0 + 0 ENSG00000284576.1 unprocessed_pseudogene TBC1D3P4 2 OTTHUMG00000059093.1 +5543 KV766198.1 HAVANA gene 181138 184359 1871.0 + 0 ENSG00000284456.1 lincRNA LINC02076 2 OTTHUMG00000179643.1 +5544 KV766198.1 HAVANA gene 188174 188285 112.0 - 0 ENSG00000283850.1 processed_pseudogene YWHAEP2 2 OTTHUMG00000179532.1 +5545 KV766198.1 HAVANA gene 185707 195076 2989.0 + 0 ENSG00000284350.2 transcribed_unprocessed_pseudogene KRT17P5 2 OTTHUMG00000059247.2 +5546 KV766198.1 HAVANA gene 196840 201827 2145.0 + 0 ENSG00000284257.1 transcribed_unprocessed_pseudogene KRT17P2 2 OTTHUMG00000059248.2 +5547 KV766198.1 HAVANA gene 202030 212874 2373.0 + 0 ENSG00000284527.1 transcribed_unprocessed_pseudogene KRT16P1 2 OTTHUMG00000059249.2 +5548 KV766198.1 HAVANA gene 222934 223041 108.0 + 0 ENSG00000284205.1 unprocessed_pseudogene AL353997.7 2 OTTHUMG00000130869.1 overlapping_locus +5549 KV766198.1 HAVANA gene 223553 223718 166.0 - 0 ENSG00000284014.1 processed_pseudogene AL353997.6 2 OTTHUMG00000179897.1 +5550 KV766198.1 HAVANA gene 230370 233034 2665.0 + 0 ENSG00000283924.1 processed_pseudogene TNPO1P2 2 OTTHUMG00000059250.1 overlapping_locus +5551 KV766198.1 HAVANA gene 220223 245899 755.0 + 0 ENSG00000284285.1 transcribed_processed_pseudogene KRT16P4 2 OTTHUMG00000130551.1 overlapping_locus +5552 KV766198.1 HAVANA gene 246716 264924 4754.0 + 0 ENSG00000284021.1 protein_coding LGALS9C 2 OTTHUMG00000059251.6 +5553 KV766198.1 HAVANA gene 267074 276292 1974.0 - 0 ENSG00000284312.1 transcribed_unprocessed_pseudogene NOS2P2 2 OTTHUMG00000059253.6 +5554 KV880763.1 HAVANA gene 52439 88196 3711.0 + 0 ENSG00000284338.1 lincRNA AL390036.2 2 OTTHUMG00000011012.2 +5555 KV880763.1 HAVANA gene 146179 213019 6548.0 - 0 ENSG00000284468.2 protein_coding SLC25A24 2 OTTHUMG00000011013.7 +5556 KV880763.1 HAVANA gene 212096 213661 1566.0 + 0 ENSG00000284319.1 antisense AC275454.2 2 OTTHUMG00000175898.1 overlapping_locus +5557 KV880763.1 HAVANA gene 212583 214913 2331.0 + 0 ENSG00000283911.1 TEC AC275454.1 2 OTTHUMG00000175904.1 overlapping_locus +5558 KV880763.1 ENSEMBL gene 485123 485850 669.0 + 0 ENSG00000283707.1 pseudogene AC275455.1 3 +5559 KV880763.1 ENSEMBL gene 500098 500472 375.0 + 0 ENSG00000284396.2 protein_coding AC275455.2 3 +5560 KV880763.1 HAVANA gene 507053 512721 285.0 - 0 ENSG00000284432.1 unprocessed_pseudogene AC275455.3 2 OTTHUMG00000191785.1 +5561 KV880763.1 HAVANA gene 513956 515053 1098.0 + 0 ENSG00000284110.1 processed_pseudogene ST13P21 2 OTTHUMG00000011458.1 +5562 KV880763.1 HAVANA gene 520170 520839 670.0 + 0 ENSG00000284199.1 processed_pseudogene AL392088.3 2 OTTHUMG00000011459.2 +5563 KV880764.1 HAVANA gene 81203 115135 1725.0 - 0 ENSG00000284068.1 protein_coding KPNA7 2 OTTHUMG00000154412.1 +5564 KV880765.1 HAVANA gene 38081 38822 742.0 - 0 ENSG00000284406.1 antisense AC004492.2 2 OTTHUMG00000185707.1 +5565 KV880765.1 HAVANA gene 14483 48051 6351.0 + 0 ENSG00000283847.1 protein_coding HBP1 2 OTTHUMG00000157642.4 +5566 KV880765.1 HAVANA gene 295722 296001 280.0 + 0 ENSG00000284045.1 processed_pseudogene AC255406.1 2 OTTHUMG00000157262.1 +5567 KV880765.1 HAVANA gene 315665 321307 3683.0 + 0 ENSG00000283812.1 protein_coding GPR22 2 OTTHUMG00000154902.2 +5568 KV880765.1 HAVANA gene 47077 410169 8467.0 - 0 ENSG00000284369.1 protein_coding COG5 2 OTTHUMG00000023895.5 +5569 KV880765.1 HAVANA gene 409139 424119 5439.0 + 0 ENSG00000284103.1 protein_coding DUS4L 2 OTTHUMG00000154763.4 +5570 KV880765.1 HAVANA gene 425212 425712 501.0 - 0 ENSG00000284582.1 antisense AC004839.2 2 OTTHUMG00000186299.1 +5571 KV880765.1 ENSEMBL gene 449018 449162 145.0 + 0 ENSG00000284201.1 snoRNA RF01233 3 +5572 KV880766.1 ENSEMBL gene 48835 49206 372.0 + 0 ENSG00000284398.2 protein_coding AC210544.1 3 +5573 KV880766.1 ENSEMBL gene 110303 110410 108.0 - 0 ENSG00000284058.1 rRNA_pseudogene RNA5SP266 3 +5574 KV880768.1 HAVANA gene 18538 29668 573.0 + 0 ENSG00000284382.1 antisense AF001550.3 2 OTTHUMG00000177370.1 +5575 KV880768.1 HAVANA gene 21141 38201 3453.0 - 0 ENSG00000284588.1 protein_coding ZP2 2 OTTHUMG00000090681.3 +5576 KV880768.1 HAVANA gene 57356 77536 4352.0 + 0 ENSG00000284290.1 protein_coding ANKS4B 2 OTTHUMG00000177371.2 +5577 KV880768.1 HAVANA gene 123594 124197 217.0 + 0 ENSG00000284404.1 unitary_pseudogene AC241640.6 2 OTTHUMG00000191645.1 +5578 KV880768.1 HAVANA gene 62565 126775 3782.0 - 0 ENSG00000283922.1 protein_coding CRYM 2 OTTHUMG00000090707.3 +5579 KV880768.1 HAVANA gene 170820 175819 255.0 + 0 ENSG00000283817.1 unprocessed_pseudogene AC241640.3 2 OTTHUMG00000170413.2 +5580 KV880768.1 HAVANA gene 224758 224867 110.0 + 0 ENSG00000284359.1 unprocessed_pseudogene AC241640.5 2 OTTHUMG00000187893.1 +5581 KV880768.1 ENSEMBL gene 228052 247858 942.0 - 0 ENSG00000283738.2 protein_coding AC241640.1 3 +5582 KV880768.1 ENSEMBL gene 278541 282897 954.0 - 0 ENSG00000283786.2 protein_coding AC241640.2 3 +5583 KV880768.1 ENSEMBL gene 295806 302325 588.0 - 0 ENSG00000283892.2 protein_coding AC241640.4 3 +5584 KV880768.1 HAVANA gene 360967 361274 308.0 + 0 ENSG00000284226.1 processed_pseudogene AC243614.1 2 OTTHUMG00000184812.1 +5585 KV880768.1 HAVANA gene 491542 492482 375.0 + 0 ENSG00000283557.2 lincRNA AC244647.1 2 OTTHUMG00000176840.1 +5586 KV880768.1 HAVANA gene 492829 494494 1666.0 + 0 ENSG00000283854.1 lincRNA AC244647.2 2 OTTHUMG00000176839.1 +5587 KV880768.1 HAVANA gene 567453 567559 107.0 + 0 ENSG00000284529.1 unprocessed_pseudogene AC244647.3 2 OTTHUMG00000187895.1 +5588 KV880768.1 ENSEMBL gene 568655 591235 3150.0 - 0 ENSG00000284218.2 protein_coding NPIPB5 3 +5589 KV880768.1 HAVANA gene 269443 668031 7046.0 - 0 ENSG00000284578.1 transcribed_unprocessed_pseudogene SMG1P1 2 OTTHUMG00000156797.2 overlapping_locus +5590 KV880768.1 HAVANA gene 667324 686367 3366.0 + 0 ENSG00000283987.1 transcribed_unprocessed_pseudogene RRN3P3 2 OTTHUMG00000170419.2 overlapping_locus +5591 KV880768.1 HAVANA gene 697611 722603 1290.0 - 0 ENSG00000283814.1 unitary_pseudogene MFSD13B 2 OTTHUMG00000154703.1 +5592 KV880768.1 HAVANA gene 726859 730180 1455.0 - 0 ENSG00000284019.1 antisense AC241556.2 2 OTTHUMG00000175465.1 +5593 KV880768.1 HAVANA gene 735986 739912 423.0 - 0 ENSG00000283831.1 antisense AC241556.1 2 OTTHUMG00000175464.1 +5594 KV880768.1 ENSEMBL gene 755177 757557 669.0 + 0 ENSG00000284077.2 protein_coding AC241556.3 3 +5595 KV880768.1 HAVANA gene 769927 807655 9488.0 - 0 ENSG00000284282.1 protein_coding POLR3E 2 OTTHUMG00000094779.3 +5596 KV880768.1 HAVANA gene 816312 818341 714.0 + 0 ENSG00000284521.1 antisense AC241556.4 2 OTTHUMG00000175462.1 +5597 KV880768.1 ENSEMBL gene 816305 898768 7411.0 - 0 ENSG00000284161.2 protein_coding EEF2K 3 +5598 KV880768.1 HAVANA gene 913285 939455 2630.0 - 0 ENSG00000284349.1 protein_coding SDR42E2 2 OTTHUMG00000183976.2 +5599 KV880768.1 HAVANA gene 948072 1012500 5039.0 - 0 ENSG00000283835.1 protein_coding VWA3A 2 OTTHUMG00000175461.2 +5600 KV880768.1 HAVANA gene 1012807 1021782 1154.0 + 0 ENSG00000284366.1 antisense AC243828.1 2 OTTHUMG00000175460.1 +5601 KV880768.1 HAVANA gene 1017504 1097400 6122.0 - 0 ENSG00000284487.1 protein_coding MOSMO 2 OTTHUMG00000131587.3 +5602 KV880768.1 HAVANA gene 1096976 1097558 583.0 + 0 ENSG00000283816.1 antisense AC275435.1 2 OTTHUMG00000186802.1 +5603 KV880768.1 HAVANA gene 1105383 1106729 934.0 - 0 ENSG00000284243.1 processed_pseudogene AC275435.2 2 OTTHUMG00000175458.1 +5604 KV880768.1 HAVANA gene 1103929 1121173 1331.0 + 0 ENSG00000284316.1 protein_coding PDZD9 2 OTTHUMG00000131586.3 +5605 KV880768.1 HAVANA gene 1121378 1152379 5217.0 - 0 ENSG00000284493.1 protein_coding UQCRC2 2 OTTHUMG00000131585.3 +5606 KV880768.1 HAVANA gene 1153331 1154821 1491.0 + 0 ENSG00000284270.1 lincRNA AC241401.3 2 OTTHUMG00000186800.1 +5607 KV880768.1 HAVANA gene 1160053 1166175 666.0 - 0 ENSG00000283943.1 transcribed_unprocessed_pseudogene AC241401.2 2 OTTHUMG00000170418.2 +5608 KV880768.1 HAVANA gene 1185882 1225700 6290.0 + 0 ENSG00000283826.1 transcribed_unprocessed_pseudogene SMG1P4 2 OTTHUMG00000164330.2 overlapping_locus +5609 KV880768.1 ENSEMBL gene 1247660 1270054 3162.0 + 0 ENSG00000283855.2 protein_coding AC241401.1 3 +5610 KV880768.1 HAVANA gene 1271154 1271259 106.0 - 0 ENSG00000283908.1 unprocessed_pseudogene AC241988.1 2 OTTHUMG00000187894.1 +5611 KV880768.1 HAVANA gene 1309021 1310685 1665.0 + 0 ENSG00000284170.1 lincRNA AC241988.2 2 OTTHUMG00000175457.1 +5612 KV880768.1 ENSEMBL gene 1344243 1383395 1632.0 - 0 ENSG00000284559.2 protein_coding AC241409.2 3 +5613 KV880768.1 ENSEMBL gene 1462428 1462534 107.0 - 0 ENSG00000284403.1 snRNA RNU6-196P 3 +5614 KV880768.1 ENSEMBL gene 1462668 1462774 107.0 - 0 ENSG00000283754.1 snRNA RNU6-1005P 3 +5615 KV880768.1 HAVANA gene 1452168 1465291 3532.0 + 0 ENSG00000283934.1 protein_coding IGSF6 2 OTTHUMG00000090709.3 +5616 KV880768.1 HAVANA gene 1477258 1478085 828.0 - 0 ENSG00000284429.1 sense_intronic AC241409.1 2 OTTHUMG00000175456.2 overlapping_locus +5617 KV880768.1 HAVANA gene 1447355 1507599 7035.0 - 0 ENSG00000284548.1 protein_coding METTL9 2 OTTHUMG00000131584.3 ncRNA_host,overlapping_locus +5618 KV880768.1 ENSEMBL gene 1516953 1517190 238.0 - 0 ENSG00000284083.1 scaRNA RF00478 3 +5619 KV880768.1 HAVANA gene 1584452 1584987 536.0 + 0 ENSG00000284023.1 transcribed_processed_pseudogene SLC7A5P2 2 OTTHUMG00000170388.2 overlapping_locus +5620 KV880768.1 ENSEMBL gene 1598678 1598764 87.0 + 0 ENSG00000284352.1 miRNA MIR3680-1 3 +5621 KV880768.1 ENSEMBL gene 1625246 1631738 588.0 + 0 ENSG00000284330.2 protein_coding AC256236.2 3 +5622 KV880768.1 ENSEMBL gene 1644638 1649002 954.0 + 0 ENSG00000283711.2 protein_coding AC256236.1 3 +5623 KV880768.1 ENSEMBL gene 1679674 1702604 3147.0 + 0 ENSG00000284454.2 protein_coding AC256236.3 3 +5624 KZ208904.1 HAVANA gene 33153 35097 1945.0 - 0 ENSG00000285279.1 antisense AL353622.4 2 OTTHUMG00000185161.1 +5625 KZ208904.1 HAVANA gene 29753 40550 2225.0 + 0 ENSG00000285390.1 protein_coding ATP5IF1 2 OTTHUMG00000003533.2 +5626 KZ208904.1 HAVANA gene 40788 41212 425.0 + 0 ENSG00000284786.1 lincRNA AL353622.3 2 OTTHUMG00000185179.1 +5627 KZ208904.1 HAVANA gene 53171 76135 3453.0 + 0 ENSG00000285069.1 protein_coding SESN2 2 OTTHUMG00000003532.1 +5628 KZ208904.1 HAVANA gene 122646 129611 2019.0 + 0 ENSG00000284944.1 protein_coding MED18 2 OTTHUMG00000003537.2 +5629 KZ208905.1 HAVANA gene 13739 14096 358.0 + 0 ENSG00000284996.1 processed_pseudogene RPL31P12 2 OTTHUMG00000009455.2 +5630 KZ208906.1 HAVANA gene 16044 16524 481.0 - 0 ENSG00000285435.1 protein_coding HIST3H3 2 OTTHUMG00000040044.2 +5631 KZ208906.1 HAVANA gene 40362 40820 459.0 - 0 ENSG00000284795.1 processed_pseudogene RPL23AP15 2 OTTHUMG00000040047.2 +5632 KZ208906.1 HAVANA gene 48178 49072 895.0 - 0 ENSG00000284841.1 protein_coding HIST3H2A 2 OTTHUMG00000040046.1 +5633 KZ208906.1 HAVANA gene 49306 51669 2364.0 + 0 ENSG00000285449.1 protein_coding HIST3H2BB 2 OTTHUMG00000040045.1 +5634 KZ208906.1 ENSEMBL gene 53273 53351 79.0 + 0 ENSG00000284998.1 miRNA MIR4666A 3 +5635 KZ208906.1 HAVANA gene 55302 55825 524.0 - 0 ENSG00000285234.1 unitary_pseudogene HIST3H2BA 2 OTTHUMG00000040095.1 +5636 KZ208906.1 HAVANA gene 77387 78319 933.0 - 0 ENSG00000285050.1 TEC AL139288.2 2 OTTHUMG00000170550.1 +5637 KZ208906.1 HAVANA gene 78260 86965 3285.0 + 0 ENSG00000285426.1 protein_coding RNF187 2 OTTHUMG00000040043.5 +5638 KZ208906.1 HAVANA gene 101624 103504 731.0 - 0 ENSG00000285153.1 transcribed_unitary_pseudogene BTNL10 2 OTTHUMG00000191924.1 +5639 KZ208906.1 ENSEMBL gene 149485 149603 119.0 - 0 ENSG00000285166.1 rRNA RNA5S1 3 +5640 KZ208906.1 ENSEMBL gene 151724 151842 119.0 - 0 ENSG00000285285.1 rRNA RNA5S2 3 +5641 KZ208906.1 ENSEMBL gene 212165 212283 119.0 - 0 ENSG00000285168.1 rRNA RNA5S3 3 +5642 KZ208906.1 ENSEMBL gene 221127 221245 119.0 - 0 ENSG00000284853.1 rRNA RNA5S16 3 +5643 KZ208906.1 ENSEMBL gene 223369 223487 119.0 - 0 ENSG00000285158.1 rRNA RNA5S17 3 +5644 KZ208906.1 ENSEMBL gene 225239 225359 121.0 - 0 ENSG00000284877.1 rRNA_pseudogene RNA5SP18 3 +5645 KZ208906.1 HAVANA gene 227568 228706 1139.0 + 0 ENSG00000285311.1 processed_pseudogene DUSP5P1 2 OTTHUMG00000037916.3 +5646 KZ208906.1 ENSEMBL gene 229763 229887 125.0 + 0 ENSG00000285183.1 snoRNA RF00432 3 +5647 KZ208906.1 ENSEMBL gene 254907 255091 183.0 - 0 ENSG00000284794.1 pseudogene AC275639.1 3 +5648 KZ208906.1 HAVANA gene 264417 264828 412.0 + 0 ENSG00000285319.1 processed_pseudogene FTH1P2 2 OTTHUMG00000037918.2 +5649 KZ208906.1 HAVANA gene 312081 323673 4372.0 + 0 ENSG00000284984.1 protein_coding RHOU 2 OTTHUMG00000037919.1 +5650 KZ208907.1 HAVANA gene 122342 122803 462.0 - 0 ENSG00000284963.1 processed_pseudogene AC236964.1 2 OTTHUMG00000153375.1 +5651 KZ208907.1 HAVANA gene 119383 163867 920.0 + 0 ENSG00000284886.1 lincRNA AC023347.3 2 OTTHUMG00000153374.2 +5652 KZ208908.1 ENSEMBL gene 11791 11894 104.0 - 0 ENSG00000284897.1 snRNA RNU6-360P 3 +5653 KZ208908.1 HAVANA gene 23536 24106 571.0 - 0 ENSG00000285055.1 processed_pseudogene AC093698.3 2 OTTHUMG00000154785.1 +5654 KZ208908.1 ENSEMBL gene 46314 46411 98.0 - 0 ENSG00000285342.1 rRNA_pseudogene RNA5SP116 3 +5655 KZ208908.1 HAVANA gene 49401 49898 498.0 - 0 ENSG00000285271.1 processed_pseudogene RPL12P17 2 OTTHUMG00000154788.1 +5656 KZ208908.1 HAVANA gene 106527 110805 528.0 - 0 ENSG00000285058.1 transcribed_unprocessed_pseudogene CRYGEP 2 OTTHUMG00000154792.1 +5657 KZ208908.1 HAVANA gene 119901 122795 619.0 - 0 ENSG00000285434.1 protein_coding CRYGD 2 OTTHUMG00000132944.2 +5658 KZ208908.1 HAVANA gene 126431 128124 629.0 - 0 ENSG00000285011.1 protein_coding CRYGC 2 OTTHUMG00000132942.1 +5659 KZ208908.1 HAVANA gene 133688 135991 1078.0 - 0 ENSG00000285353.1 processed_pseudogene AC093698.4 2 OTTHUMG00000154791.1 +5660 KZ208909.1 HAVANA gene 84969 93408 360.0 + 0 ENSG00000284804.1 lincRNA LINC02025 2 OTTHUMG00000159058.1 +5661 KZ208911.1 HAVANA gene 21920 25430 1475.0 - 0 ENSG00000284750.1 antisense AL139039.4 2 OTTHUMG00000014238.1 +5662 KZ208911.1 HAVANA gene 25166 25857 692.0 + 0 ENSG00000285415.1 processed_pseudogene AL139039.6 2 OTTHUMG00000014236.1 +5663 KZ208911.1 HAVANA gene 85633 86111 479.0 - 0 ENSG00000285209.1 processed_pseudogene AL139039.5 2 OTTHUMG00000014239.1 +5664 KZ208911.1 HAVANA gene 3107 140252 9072.0 + 0 ENSG00000285222.1 protein_coding GCNT2 2 OTTHUMG00000014244.6 +5665 KZ208911.1 HAVANA gene 144646 145579 934.0 + 0 ENSG00000284885.1 processed_pseudogene GCNT2P 2 OTTHUMG00000014243.2 +5666 KZ208911.1 ENSEMBL gene 185542 185652 111.0 - 0 ENSG00000284941.1 misc_RNA RF00019 3 +5667 KZ208911.1 HAVANA gene 170382 203744 3467.0 + 0 ENSG00000285893.1 antisense AL358777.2 2 OTTHUMG00000192782.1 +5668 KZ208911.1 HAVANA gene 182302 205681 884.0 - 0 ENSG00000285312.1 protein_coding C6orf52 2 OTTHUMG00000014240.3 ncRNA_host +5669 KZ208911.1 HAVANA gene 205579 220666 1800.0 + 0 ENSG00000285226.1 protein_coding PAK1IP1 2 OTTHUMG00000014245.1 +5670 KZ208911.1 HAVANA gene 233799 242013 1321.0 + 0 ENSG00000284936.1 protein_coding TMEM14C 2 OTTHUMG00000014242.1 +5671 KZ208912.1 ENSEMBL gene 2050 2164 115.0 + 0 ENSG00000285487.1 miRNA MIR6892 3 +5672 KZ208912.1 HAVANA gene 444 10475 3482.0 + 0 ENSG00000285443.1 protein_coding ZYX 2 OTTHUMG00000023822.10 ncRNA_host +5673 KZ208912.1 HAVANA gene 9653 28256 4733.0 - 0 ENSG00000284816.1 protein_coding EPHA1 2 OTTHUMG00000155894.2 +5674 KZ208912.1 HAVANA gene 56398 57337 940.0 + 0 ENSG00000285054.1 unitary_pseudogene TAS2R62P 2 OTTHUMG00000154892.1 overlapping_locus +5675 KZ208912.1 HAVANA gene 62817 63773 957.0 + 0 ENSG00000285341.1 protein_coding TAS2R60 2 OTTHUMG00000154891.2 overlapping_locus +5676 KZ208912.1 HAVANA gene 97237 98160 924.0 + 0 ENSG00000284982.1 protein_coding TAS2R41 2 OTTHUMG00000155892.2 overlapping_locus +5677 KZ208912.1 HAVANA gene 107826 108766 941.0 - 0 ENSG00000285299.1 unitary_pseudogene OR2R1P 2 OTTHUMG00000154318.2 +5678 KZ208912.1 HAVANA gene 128620 138833 2898.0 - 0 ENSG00000285252.1 polymorphic_pseudogene OR10AC1 2 OTTHUMG00000155896.4 +5679 KZ208912.1 HAVANA gene 27177 142813 5316.0 + 0 ENSG00000285468.1 antisense EPHA1-AS1 2 OTTHUMG00000155893.1 overlapping_locus +5680 KZ208912.1 HAVANA gene 152113 152528 416.0 - 0 ENSG00000285052.1 processed_pseudogene AC073264.4 2 OTTHUMG00000155891.1 +5681 KZ208912.1 ENSEMBL gene 161309 161976 666.0 - 0 ENSG00000285334.1 pseudogene AC073264.5 3 +5682 KZ208912.1 HAVANA gene 164550 166099 1217.0 - 0 ENSG00000285495.1 processed_pseudogene PAICSP5 2 OTTHUMG00000155897.2 +5683 KZ208912.1 HAVANA gene 191165 193751 2587.0 + 0 ENSG00000285172.1 protein_coding CTAGE15 2 OTTHUMG00000153233.2 retrogene +5684 KZ208912.1 ENSEMBL gene 264004 269046 1911.0 + 0 ENSG00000285017.1 protein_coding TCAF2 3 +5685 KZ208912.1 ENSEMBL gene 298949 299051 103.0 - 0 ENSG00000284766.1 snRNA RNU6-267P 3 +5686 KZ208912.1 HAVANA gene 299410 302017 2608.0 - 0 ENSG00000285123.1 protein_coding CTAGE6 2 OTTHUMG00000157770.2 +5687 KZ208912.1 ENSEMBL gene 331168 331835 666.0 + 0 ENSG00000284787.1 pseudogene AC275440.1 3 +5688 KZ208912.1 HAVANA gene 340592 341017 426.0 + 0 ENSG00000285393.1 processed_pseudogene AC254813.3 2 OTTHUMG00000157244.1 +5689 KZ208912.1 HAVANA gene 345028 362275 2896.0 + 0 ENSG00000285351.2 transcribed_unprocessed_pseudogene TCAF2P1 2 OTTHUMG00000153235.3 +5690 KZ208912.1 HAVANA gene 306111 381237 3625.0 - 0 ENSG00000285277.1 transcribed_unprocessed_pseudogene AC254813.2 2 OTTHUMG00000157769.1 +5691 KZ208912.1 ENSEMBL gene 420332 420832 501.0 - 0 ENSG00000284821.1 protein_coding AC254813.1 3 +5692 KZ208912.1 HAVANA gene 479395 480508 1114.0 + 0 ENSG00000284965.1 protein_coding OR2F2 2 OTTHUMG00000157768.1 +5693 KZ208912.1 HAVANA gene 523351 524455 698.0 - 0 ENSG00000285391.1 processed_pseudogene AC004853.2 2 OTTHUMG00000184500.1 +5694 KZ208912.1 HAVANA gene 525135 526050 916.0 + 0 ENSG00000284945.1 unprocessed_pseudogene OR2Q1P 2 OTTHUMG00000059327.2 +5695 KZ208912.1 HAVANA gene 529372 530881 1510.0 + 0 ENSG00000285242.1 processed_pseudogene SLC16A1P1 2 OTTHUMG00000157772.1 overlapping_locus +5696 KZ208912.1 HAVANA gene 499074 541542 5109.0 + 0 ENSG00000284866.1 protein_coding OR2F1 2 OTTHUMG00000157771.2 +5697 KZ208912.1 HAVANA gene 544550 553023 5196.0 + 0 ENSG00000284939.1 protein_coding OR6B1 2 OTTHUMG00000157765.2 +5698 KZ208913.1 HAVANA gene 3522 13419 8681.0 + 0 ENSG00000284896.1 protein_coding OR2A5 2 OTTHUMG00000158006.2 +5699 KZ208913.1 ENSEMBL gene 28797 29726 930.0 + 0 ENSG00000285496.1 protein_coding OR2A25 3 +5700 KZ208913.1 HAVANA gene 32302 32406 105.0 + 0 ENSG00000285093.1 unprocessed_pseudogene OR2A41P 2 OTTHUMG00000158014.1 +5701 KZ208913.1 HAVANA gene 40840 53519 4172.0 + 0 ENSG00000284768.1 protein_coding OR2A12 2 OTTHUMG00000157996.2 +5702 KZ208913.1 HAVANA gene 64074 65124 1051.0 + 0 ENSG00000285071.1 protein_coding OR2A2 2 OTTHUMG00000158001.1 +5703 KZ208913.1 HAVANA gene 73011 73910 900.0 - 0 ENSG00000285378.1 unprocessed_pseudogene OR2A15P 2 OTTHUMG00000157999.1 +5704 KZ208913.1 ENSEMBL gene 83671 84597 927.0 + 0 ENSG00000284891.1 protein_coding OR2A14 3 +5705 KZ208913.1 HAVANA gene 96565 97494 930.0 + 0 ENSG00000284949.1 unprocessed_pseudogene OR2A13P 2 OTTHUMG00000154312.1 +5706 KZ208913.1 HAVANA gene 138031 140618 2588.0 + 0 ENSG00000285322.1 protein_coding CTAGE4 2 OTTHUMG00000157997.1 retrogene +5707 KZ208913.1 HAVANA gene 140648 150216 2431.0 - 0 ENSG00000284790.1 protein_coding ARHGEF35 2 OTTHUMG00000158010.1 +5708 KZ208913.1 ENSEMBL gene 186517 187437 921.0 - 0 ENSG00000284836.1 protein_coding OR2A42 3 +5709 KZ208913.1 HAVANA gene 204639 210838 3520.0 - 0 ENSG00000285059.1 transcribed_unprocessed_pseudogene OR2A20P 2 OTTHUMG00000158000.2 overlapping_locus +5710 KZ208913.1 HAVANA gene 212257 219386 2152.0 - 0 ENSG00000284749.1 protein_coding OR2A7 2 OTTHUMG00000158002.2 overlapping_locus +5711 KZ208913.1 HAVANA gene 221295 223882 2588.0 - 0 ENSG00000285175.1 protein_coding CTAGE8 2 OTTHUMG00000158009.1 retrogene,overlapping_locus +5712 KZ208913.1 HAVANA gene 249067 255538 3337.0 + 0 ENSG00000285362.1 transcribed_unprocessed_pseudogene OR2A9P 2 OTTHUMG00000157998.2 +5713 KZ208913.1 ENSEMBL gene 272736 273656 921.0 + 0 ENSG00000285105.1 protein_coding OR2A1 3 +5714 KZ208913.1 ENSEMBL gene 315224 328230 4461.0 + 0 ENSG00000285408.1 protein_coding AC256203.1 3 +5715 KZ208913.1 ENSEMBL gene 332939 335269 2331.0 + 0 ENSG00000284912.1 protein_coding AC243837.2 3 +5716 KZ208913.1 ENSEMBL gene 342566 343495 930.0 + 0 ENSG00000284827.1 protein_coding AC243837.1 3 +5717 KZ208913.1 ENSEMBL gene 350597 350890 294.0 + 0 ENSG00000285013.1 protein_coding AC243837.3 3 +5718 KZ208913.1 ENSEMBL gene 369356 370276 921.0 + 0 ENSG00000285154.1 protein_coding AC243837.4 3 +5719 KZ208913.1 ENSEMBL gene 412142 429525 4791.0 + 0 ENSG00000284933.1 protein_coding ARHGEF5 3 +5720 KZ208913.1 HAVANA gene 446707 459685 2113.0 - 0 ENSG00000285328.1 protein_coding NOBOX 2 OTTHUMG00000158051.4 +5721 KZ208913.1 HAVANA gene 484282 484770 489.0 - 0 ENSG00000285288.1 processed_pseudogene PPIAP83 2 OTTHUMG00000158052.1 +5722 KZ208913.1 ENSEMBL gene 501138 501274 137.0 + 0 ENSG00000285488.1 snRNA RNU6ATAC40P 3 +5723 KZ208914.1 HAVANA gene 22194 45325 5307.0 + 0 ENSG00000284774.1 protein_coding HSF1 2 OTTHUMG00000174604.3 +5724 KZ208914.1 HAVANA gene 45193 45741 444.0 - 0 ENSG00000284758.1 antisense AC233992.4 2 OTTHUMG00000165271.1 +5725 KZ208914.1 ENSEMBL gene 47849 47918 70.0 - 0 ENSG00000285428.1 miRNA MIR6848 3 +5726 KZ208914.1 HAVANA gene 45187 57513 4131.0 - 0 ENSG00000285482.1 protein_coding DGAT1 2 OTTHUMG00000174606.3 ncRNA_host +5727 KZ208914.1 HAVANA gene 61168 66884 3779.0 - 0 ENSG00000284923.1 protein_coding SCRT1 2 OTTHUMG00000165229.4 +5728 KZ208914.1 HAVANA gene 82822 85517 2234.0 - 0 ENSG00000285272.1 protein_coding TMEM249 2 OTTHUMG00000165167.4 overlapping_locus +5729 KZ208914.1 HAVANA gene 83831 86212 1596.0 - 0 ENSG00000285047.1 protein_coding AC233992.6 2 OTTHUMG00000184228.2 overlapping_locus +5730 KZ208914.1 HAVANA gene 86034 89979 3375.0 - 0 ENSG00000285442.1 protein_coding FBXL6 2 OTTHUMG00000165169.2 overlapping_locus +5731 KZ208914.1 HAVANA gene 84738 91889 3077.0 + 0 ENSG00000285112.1 protein_coding SLC52A2 2 OTTHUMG00000165168.9 +5732 KZ208914.1 HAVANA gene 103704 123845 2742.0 + 0 ENSG00000285451.1 protein_coding ADCK5 2 OTTHUMG00000165190.5 +5733 KZ208914.1 ENSEMBL gene 124752 124833 82.0 - 0 ENSG00000284918.1 miRNA MIR939 3 +5734 KZ208914.1 ENSEMBL gene 130689 130768 80.0 - 0 ENSG00000285207.1 miRNA MIR1234 3 +5735 KZ208914.1 ENSEMBL gene 130880 130948 69.0 - 0 ENSG00000285088.1 miRNA MIR6849 3 +5736 KZ208914.1 HAVANA gene 123832 139952 6072.0 - 0 ENSG00000285049.1 protein_coding CPSF1 2 OTTHUMG00000174612.4 ncRNA_host +5737 KZ208914.1 HAVANA gene 140095 140579 485.0 + 0 ENSG00000284888.1 antisense AC233992.5 2 OTTHUMG00000185629.1 +5738 KZ208914.1 HAVANA gene 140345 147498 5033.0 - 0 ENSG00000285243.1 protein_coding SLC39A4 2 OTTHUMG00000165208.4 +5739 KZ208914.1 HAVANA gene 154203 159165 3769.0 - 0 ENSG00000285339.1 protein_coding VPS28 2 OTTHUMG00000165209.5 +5740 KZ208915.1 HAVANA gene 10874 12468 1595.0 - 0 ENSG00000285267.1 lincRNA AF287957.2 2 OTTHUMG00000185396.1 +5741 KZ208915.1 ENSEMBL gene 17394 17490 97.0 - 0 ENSG00000284905.1 miRNA MIR8055 3 +5742 KZ208915.1 HAVANA gene 13745 103479 3046.0 - 0 ENSG00000285400.1 antisense MCPH1-AS1 2 OTTHUMG00000163619.3 ncRNA_host +5743 KZ208915.1 ENSEMBL gene 140438 140510 73.0 - 0 ENSG00000285083.1 miRNA MIR4659B 3 +5744 KZ208915.1 ENSEMBL gene 140434 140514 81.0 + 0 ENSG00000284880.1 miRNA MIR4659A 3 +5745 KZ208915.1 HAVANA gene 103627 154936 4684.0 + 0 ENSG00000284980.1 protein_coding AGPAT5 2 OTTHUMG00000163656.4 ncRNA_host +5746 KZ208915.1 ENSEMBL gene 206473 230757 2058.0 - 0 ENSG00000285327.1 protein_coding XKR5 3 +5747 KZ208915.1 HAVANA gene 265822 273254 478.0 - 0 ENSG00000284881.1 protein_coding DEFB1 2 OTTHUMG00000090367.2 +5748 KZ208915.1 HAVANA gene 230818 280505 1433.0 + 0 ENSG00000285156.1 lincRNA GS1-24F4.2 2 OTTHUMG00000165210.1 +5749 KZ208915.1 HAVANA gene 319817 321199 469.0 - 0 ENSG00000285136.1 protein_coding DEFA6 2 OTTHUMG00000149984.1 +5750 KZ208915.1 HAVANA gene 323731 325596 401.0 + 0 ENSG00000285227.1 antisense AC270297.1 2 OTTHUMG00000165211.1 +5751 KZ208915.1 HAVANA gene 330945 333461 617.0 - 0 ENSG00000285318.1 protein_coding DEFA4 2 OTTHUMG00000090382.1 +5752 KZ208915.1 HAVANA gene 345838 346711 285.0 - 0 ENSG00000284863.1 unprocessed_pseudogene DEFA8P 2 OTTHUMG00000150024.1 +5753 KZ208915.1 HAVANA gene 354399 355271 285.0 - 0 ENSG00000284789.1 unprocessed_pseudogene DEFA9P 2 OTTHUMG00000150021.1 +5754 KZ208915.1 HAVANA gene 363250 364222 288.0 - 0 ENSG00000285475.1 unprocessed_pseudogene DEFA10P 2 OTTHUMG00000150022.1 +5755 KZ208915.1 HAVANA gene 372761 375192 486.0 - 0 ENSG00000284983.1 protein_coding DEFA1 2 OTTHUMG00000154594.1 +5756 KZ208915.1 ENSEMBL gene 382528 383370 168.0 - 0 ENSG00000284913.1 protein_coding AC270300.1 3 +5757 KZ208915.1 ENSEMBL gene 392003 392864 282.0 - 0 ENSG00000285176.1 protein_coding DEFA1B 3 +5758 KZ208915.1 ENSEMBL gene 401646 402489 168.0 - 0 ENSG00000284924.1 protein_coding AC270300.2 3 +5759 KZ208915.1 HAVANA gene 410989 413425 498.0 - 0 ENSG00000284835.1 protein_coding DEFA3 2 OTTHUMG00000090381.2 +5760 KZ208915.1 HAVANA gene 423765 424613 261.0 - 0 ENSG00000285439.1 unprocessed_pseudogene DEFA11P 2 OTTHUMG00000150023.2 +5761 KZ208915.1 HAVANA gene 433696 434564 285.0 - 0 ENSG00000285113.1 unprocessed_pseudogene DEFA7P 2 OTTHUMG00000143737.1 +5762 KZ208915.1 HAVANA gene 450430 451860 449.0 - 0 ENSG00000285251.1 protein_coding DEFA5 2 OTTHUMG00000090383.2 +5763 KZ208915.1 HAVANA gene 478095 478452 358.0 + 0 ENSG00000284960.1 processed_pseudogene AC245425.1 2 OTTHUMG00000165380.1 +5764 KZ208915.1 HAVANA gene 507459 508873 183.0 - 0 ENSG00000285014.1 processed_pseudogene AC270249.1 2 OTTHUMG00000150581.1 +5765 KZ208915.1 HAVANA gene 518004 518851 848.0 + 0 ENSG00000285129.1 processed_pseudogene RPS3AP30 2 OTTHUMG00000150575.1 +5766 KZ208915.1 HAVANA gene 538790 538999 210.0 - 0 ENSG00000284771.1 processed_pseudogene SNRPCP6 2 OTTHUMG00000165381.2 +5767 KZ208915.1 HAVANA gene 565690 565894 205.0 + 0 ENSG00000285418.1 processed_pseudogene SNRPCP17 2 OTTHUMG00000163645.1 +5768 KZ208915.1 HAVANA gene 586042 586704 663.0 - 0 ENSG00000285381.1 processed_pseudogene RPS3AP33 2 OTTHUMG00000149981.2 +5769 KZ208915.1 HAVANA gene 595885 595986 102.0 + 0 ENSG00000285466.1 processed_pseudogene AC270249.2 2 OTTHUMG00000150577.1 +5770 KZ208915.1 HAVANA gene 616822 617039 218.0 - 0 ENSG00000284760.1 unprocessed_pseudogene AC246795.1 2 OTTHUMG00000192236.1 +5771 KZ208915.1 HAVANA gene 622952 623172 221.0 - 0 ENSG00000285211.1 unprocessed_pseudogene AC246795.4 2 OTTHUMG00000192243.1 +5772 KZ208915.1 HAVANA gene 633366 633629 264.0 - 0 ENSG00000284777.1 processed_pseudogene AC246795.2 2 OTTHUMG00000165388.2 +5773 KZ208915.1 HAVANA gene 641711 642642 932.0 - 0 ENSG00000285474.1 unprocessed_pseudogene OR7E154P 2 OTTHUMG00000165389.1 +5774 KZ208915.1 HAVANA gene 659638 662649 1395.0 + 0 ENSG00000285832.1 protein_coding AC246795.8 2 OTTHUMG00000150263.3 +5775 KZ208915.1 HAVANA gene 674052 674676 625.0 - 0 ENSG00000285767.1 unprocessed_pseudogene AC246795.7 2 OTTHUMG00000193399.1 +5776 KZ208915.1 HAVANA gene 676902 679724 1587.0 - 0 ENSG00000284870.1 protein_coding PRR23D1 2 OTTHUMG00000165386.1 +5777 KZ208915.1 HAVANA gene 692059 694213 838.0 - 0 ENSG00000285678.1 unprocessed_pseudogene AC246795.6 2 OTTHUMG00000193398.1 +5778 KZ208915.1 ENSEMBL gene 718458 720471 315.0 + 0 ENSG00000284950.1 protein_coding AC246795.3 3 +5779 KZ208915.1 HAVANA gene 710045 723507 389.0 - 0 ENSG00000284979.1 protein_coding DEFB107B 2 OTTHUMG00000149987.1 +5780 KZ208915.1 HAVANA gene 729759 731683 331.0 - 0 ENSG00000285015.1 protein_coding DEFB105B 2 OTTHUMG00000129315.2 +5781 KZ208915.1 ENSEMBL gene 732970 736745 195.0 + 0 ENSG00000285617.1 protein_coding DEFB106A 3 +5782 KZ208915.1 ENSEMBL gene 744282 748990 216.0 + 0 ENSG00000285034.1 protein_coding DEFB104A 3 +5783 KZ208915.1 ENSEMBL gene 755845 771346 400.0 + 0 ENSG00000285507.1 protein_coding AC246795.5 3 +5784 KZ208915.1 ENSEMBL gene 789235 790379 201.0 + 0 ENSG00000285376.1 protein_coding DEFB103A 3 +5785 KZ208915.1 HAVANA gene 798820 800375 1556.0 - 0 ENSG00000285504.1 processed_pseudogene HSPD1P3 2 OTTHUMG00000165385.1 +5786 KZ208915.1 HAVANA gene 802503 804514 332.0 + 0 ENSG00000285433.1 protein_coding DEFB4B 2 OTTHUMG00000143857.3 +5787 KZ208915.1 ENSEMBL gene 841883 846235 219.0 - 0 ENSG00000284958.1 protein_coding AC270258.1 3 +5788 KZ208915.1 ENSEMBL gene 858146 861402 888.0 + 0 ENSG00000285120.1 protein_coding ZNF705B 3 +5789 KZ208915.1 HAVANA gene 876438 877554 1117.0 - 0 ENSG00000285494.1 unprocessed_pseudogene AC275362.1 2 OTTHUMG00000150576.1 +5790 KZ208915.1 HAVANA gene 880674 882266 1593.0 - 0 ENSG00000284781.1 protein_coding USP17L4 2 OTTHUMG00000150574.3 +5791 KZ208915.1 HAVANA gene 885400 886992 1593.0 - 0 ENSG00000284806.1 protein_coding USP17L3 2 OTTHUMG00000165406.3 +5792 KZ208915.1 HAVANA gene 899413 906517 264.0 - 0 ENSG00000284851.1 unprocessed_pseudogene DEFB109B 2 OTTHUMG00000149982.2 +5793 KZ208915.1 HAVANA gene 921337 924347 1395.0 - 0 ENSG00000284799.1 unprocessed_pseudogene FAM90A20P 2 OTTHUMG00000165214.1 +5794 KZ208915.1 HAVANA gene 928959 931969 1395.0 - 0 ENSG00000285074.1 unprocessed_pseudogene FAM90A3P 2 OTTHUMG00000160359.2 +5795 KZ208915.1 HAVANA gene 940729 943739 1395.0 - 0 ENSG00000285795.1 protein_coding AC275362.2 2 OTTHUMG00000150265.4 +5796 KZ208915.1 ENSEMBL gene 1091165 1093094 282.0 + 0 ENSG00000285004.1 pseudogene AC275401.4 3 +5797 KZ208915.1 ENSEMBL gene 1110700 1110870 171.0 - 0 ENSG00000284947.1 protein_coding AC275401.1 3 +5798 KZ208915.1 ENSEMBL gene 1124467 1125245 777.0 + 0 ENSG00000285352.1 pseudogene AC275401.6 3 +5799 KZ208915.1 HAVANA gene 1138908 1139538 631.0 + 0 ENSG00000285452.1 processed_pseudogene ENPP7P12 2 OTTHUMG00000165299.1 +5800 KZ208915.1 ENSEMBL gene 1151152 1153513 291.0 + 0 ENSG00000285316.1 protein_coding AC275401.5 3 +5801 KZ208915.1 HAVANA gene 1188133 1195260 265.0 + 0 ENSG00000284926.1 unprocessed_pseudogene DEFB109A 2 OTTHUMG00000158671.3 +5802 KZ208915.1 HAVANA gene 1208211 1209797 1587.0 + 0 ENSG00000284975.1 processed_pseudogene AC275401.2 2 OTTHUMG00000165460.2 +5803 KZ208915.1 HAVANA gene 1212926 1214106 1181.0 + 0 ENSG00000284991.1 processed_pseudogene AC275401.3 2 OTTHUMG00000165459.2 +5804 KZ208915.1 ENSEMBL gene 1229096 1232350 888.0 - 0 ENSG00000285124.1 protein_coding AC270472.1 3 +5805 KZ208915.1 HAVANA gene 1242715 1247073 240.0 + 0 ENSG00000284778.1 unprocessed_pseudogene DEFB108E 2 OTTHUMG00000165456.1 +5806 KZ208915.1 ENSEMBL gene 1254807 1254856 50.0 + 0 ENSG00000284894.1 rRNA_pseudogene RNA5SP254 3 +5807 KZ208915.1 HAVANA gene 1270186 1277539 240.0 + 0 ENSG00000285249.1 protein_coding DEFB130A 2 OTTHUMG00000158742.2 +5808 KZ208915.1 HAVANA gene 1298272 1298436 165.0 + 0 ENSG00000284782.1 processed_pseudogene DEFB131C 2 OTTHUMG00000165473.3 +5809 KZ208915.1 HAVANA gene 1307328 1308294 967.0 + 0 ENSG00000285490.1 unprocessed_pseudogene AC270275.3 2 OTTHUMG00000165315.1 +5810 KZ208915.1 HAVANA gene 1332994 1333211 218.0 + 0 ENSG00000285349.1 transcribed_unprocessed_pseudogene AC270275.2 2 OTTHUMG00000192231.1 +5811 KZ208915.1 HAVANA gene 1343954 1344636 683.0 + 0 ENSG00000285431.1 transcribed_processed_pseudogene DEFB131E 2 OTTHUMG00000165312.3 +5812 KZ208915.1 HAVANA gene 1348550 1348931 382.0 - 0 ENSG00000284893.1 processed_pseudogene AC270275.1 2 OTTHUMG00000165311.1 +5813 KZ208915.1 HAVANA gene 1351705 1354844 1068.0 + 0 ENSG00000284754.1 protein_coding DEFB134 2 OTTHUMG00000158718.4 +5814 KZ208915.1 HAVANA gene 1363428 1365697 234.0 - 0 ENSG00000285365.1 protein_coding DEFB135 2 OTTHUMG00000158719.2 +5815 KZ208915.1 HAVANA gene 1373422 1374084 237.0 + 0 ENSG00000285087.1 protein_coding DEFB136 2 OTTHUMG00000158720.2 +5816 KZ208915.1 HAVANA gene 1414829 1419435 1047.0 + 0 ENSG00000285469.1 transcribed_unprocessed_pseudogene OR7E161P 2 OTTHUMG00000165472.2 +5817 KZ208915.1 HAVANA gene 1451183 1452203 377.0 + 0 ENSG00000285225.1 unprocessed_pseudogene AC270285.7 2 OTTHUMG00000165307.2 +5818 KZ208915.1 ENSEMBL gene 1494619 1497210 330.0 + 0 ENSG00000285259.1 protein_coding AC270285.8 3 +5819 KZ208915.1 HAVANA gene 1501703 1501940 238.0 + 0 ENSG00000284973.1 sense_intronic AC270285.3 2 OTTHUMG00000183972.1 overlapping_locus +5820 KZ208915.1 ENSEMBL gene 1502301 1502966 228.0 + 0 ENSG00000285132.1 protein_coding AC270285.4 3 +5821 KZ208915.1 ENSEMBL gene 1509466 1545258 1521.0 - 0 ENSG00000284967.1 protein_coding AC270285.2 3 +5822 KZ208915.1 HAVANA gene 1545523 1550165 1091.0 + 0 ENSG00000285261.1 lincRNA AC270285.9 2 OTTHUMG00000165417.1 +5823 KZ208915.1 HAVANA gene 1557710 1558091 382.0 - 0 ENSG00000285173.1 processed_pseudogene SUB1P1 2 OTTHUMG00000165367.1 +5824 KZ208915.1 ENSEMBL gene 1561828 1562058 231.0 - 0 ENSG00000284811.1 protein_coding AC270285.1 3 +5825 KZ208915.1 ENSEMBL gene 1564854 1576652 180.0 - 0 ENSG00000285197.1 protein_coding AC270285.5 3 +5826 KZ208915.1 ENSEMBL gene 1585980 1586669 690.0 - 0 ENSG00000285217.1 protein_coding AC270285.6 3 +5827 KZ208915.1 HAVANA gene 1588081 1671110 4443.0 - 0 ENSG00000285109.1 protein_coding GATA4 2 OTTHUMG00000090800.4 +5828 KZ208915.1 HAVANA gene 1783422 1795610 2594.0 + 0 ENSG00000285457.1 antisense AC270286.2 2 OTTHUMG00000165416.2 +5829 KZ208915.1 ENSEMBL gene 1784011 1800028 1302.0 - 0 ENSG00000285369.1 protein_coding AC270286.1 3 +5830 KZ208915.1 HAVANA gene 1867026 1868891 710.0 + 0 ENSG00000285157.1 lincRNA AC270272.3 2 OTTHUMG00000192612.1 +5831 KZ208915.1 ENSEMBL gene 1904157 1904429 273.0 + 0 ENSG00000285072.1 protein_coding AC270272.2 3 +5832 KZ208915.1 ENSEMBL gene 1923946 1924200 255.0 + 0 ENSG00000284798.1 protein_coding AC270272.1 3 +5833 KZ208915.1 ENSEMBL gene 1955986 1956092 107.0 + 0 ENSG00000285464.1 snRNA RNU6-1084P 3 +5834 KZ208915.1 ENSEMBL gene 1967177 1967457 281.0 - 0 ENSG00000285295.1 misc_RNA RN7SL293P 3 +5835 KZ208915.1 HAVANA gene 1909910 1978449 1909.0 - 0 ENSG00000285275.1 antisense FAM167A-AS1 2 OTTHUMG00000165366.3 ncRNA_host,overlapping_locus +5836 KZ208915.1 HAVANA gene 1978399 2007208 2235.0 - 0 ENSG00000284856.1 transcribed_unitary_pseudogene TDH 2 OTTHUMG00000165365.6 overlapping_locus +5837 KZ208915.1 HAVANA gene 2014637 2015957 1321.0 - 0 ENSG00000285084.1 protein_coding SLC35G5 2 OTTHUMG00000090653.2 retrogene +5838 KZ208915.1 ENSEMBL gene 2024063 2029971 330.0 - 0 ENSG00000285032.1 protein_coding AC270277.2 3 +5839 KZ208915.1 HAVANA gene 2021419 2030989 5856.0 + 0 ENSG00000285340.1 antisense AC270277.5 2 OTTHUMG00000165413.2 +5840 KZ208915.1 ENSEMBL gene 2048937 2061962 303.0 - 0 ENSG00000284961.1 protein_coding AC270277.1 3 +5841 KZ208915.1 HAVANA gene 2061783 2063370 1588.0 + 0 ENSG00000285067.1 antisense AC270277.3 2 OTTHUMG00000192013.1 +5842 KZ208915.1 HAVANA gene 2064350 2065487 564.0 + 0 ENSG00000285118.1 unprocessed_pseudogene AC270277.4 2 OTTHUMG00000160436.2 +5843 KZ208915.1 HAVANA gene 2090255 2090837 583.0 - 0 ENSG00000285195.1 processed_pseudogene RPL19P13 2 OTTHUMG00000158120.2 +5844 KZ208915.1 HAVANA gene 2078996 2099243 241.0 + 0 ENSG00000285284.1 lincRNA LINC00529 2 OTTHUMG00000165427.2 +5845 KZ208915.1 HAVANA gene 2143260 2143966 707.0 - 0 ENSG00000284784.1 lincRNA AC270301.1 2 OTTHUMG00000183970.1 +5846 KZ208915.1 ENSEMBL gene 2145586 2151796 855.0 + 0 ENSG00000284927.1 protein_coding AC270301.3 3 +5847 KZ208915.1 HAVANA gene 2171331 2171850 520.0 - 0 ENSG00000285026.1 processed_pseudogene AC270301.5 2 OTTHUMG00000158111.2 +5848 KZ208915.1 HAVANA gene 2208297 2210006 1710.0 + 0 ENSG00000285276.1 sense_intronic AC270301.7 2 OTTHUMG00000165426.1 overlapping_locus +5849 KZ208915.1 HAVANA gene 2220851 2223534 1741.0 + 0 ENSG00000284974.1 sense_intronic AC270301.4 2 OTTHUMG00000165425.2 overlapping_locus +5850 KZ208915.1 HAVANA gene 2237198 2239136 1939.0 + 0 ENSG00000285459.1 sense_intronic AC270301.8 2 OTTHUMG00000165424.3 overlapping_locus +5851 KZ208915.1 HAVANA gene 2240235 2242248 2014.0 + 0 ENSG00000284801.1 sense_intronic AC270301.2 2 OTTHUMG00000184046.1 overlapping_locus +5852 KZ208915.1 HAVANA gene 2279931 2284379 639.0 + 0 ENSG00000285247.1 lincRNA AC270301.6 2 OTTHUMG00000165422.1 overlapping_locus +5853 KZ208915.1 ENSEMBL gene 2311706 2311802 97.0 + 0 ENSG00000285056.1 miRNA MIR598 3 +5854 KZ208915.1 ENSEMBL gene 2422403 2449284 1158.0 + 0 ENSG00000285021.1 protein_coding AC270264.1 3 +5855 KZ208915.1 HAVANA gene 2487820 2491171 3352.0 + 0 ENSG00000285403.1 TEC AC270290.3 2 OTTHUMG00000163823.1 +5856 KZ208915.1 HAVANA gene 2500764 2506687 439.0 - 0 ENSG00000284970.1 antisense AC270290.1 2 OTTHUMG00000163822.1 +5857 KZ208915.1 ENSEMBL gene 2521689 2521759 71.0 + 0 ENSG00000284875.1 miRNA MIR1322 3 +5858 KZ208915.1 HAVANA gene 2575693 2617864 1019.0 - 0 ENSG00000285187.1 antisense AC270290.2 2 OTTHUMG00000163821.1 +5859 KZ208915.1 HAVANA gene 2507416 2621779 1753.0 + 0 ENSG00000284764.1 protein_coding PINX1 2 OTTHUMG00000171787.1 ncRNA_host,overlapping_locus +5860 KZ208915.1 HAVANA gene 2616666 2623410 3216.0 + 0 ENSG00000285438.1 protein_coding SOX7 2 OTTHUMG00000090585.1 overlapping_locus +5861 KZ208915.1 ENSEMBL gene 2660511 2660629 119.0 - 0 ENSG00000285126.1 rRNA_pseudogene RNA5SP252 3 +5862 KZ208915.1 HAVANA gene 2646600 2674472 5346.0 - 0 ENSG00000285147.1 protein_coding C8orf74 2 OTTHUMG00000163807.2 +5863 KZ208915.1 ENSEMBL gene 2680031 2680123 93.0 - 0 ENSG00000285364.1 miRNA MIR4286 3 +5864 KZ208915.1 ENSEMBL gene 2723861 2740141 7179.0 + 0 ENSG00000285131.1 protein_coding RP1L1 3 +5865 KZ208915.1 ENSEMBL gene 2773298 2775533 207.0 - 0 ENSG00000285214.1 protein_coding AC270276.1 3 +5866 KZ208915.1 HAVANA gene 2792885 2821501 3135.0 - 0 ENSG00000285141.1 protein_coding PRSS55 2 OTTHUMG00000129345.4 +5867 KZ208915.1 HAVANA gene 2857358 2860217 2860.0 - 0 ENSG00000285392.1 lincRNA AC270276.2 2 OTTHUMG00000185404.1 +5868 KZ208915.1 HAVANA gene 2867604 2870412 1496.0 + 0 ENSG00000284756.2 lincRNA AC270296.1 2 OTTHUMG00000163804.2 +5869 KZ208915.1 ENSEMBL gene 2870680 2870786 107.0 - 0 ENSG00000284813.1 snRNA RNU6-729P 3 +5870 KZ208915.1 HAVANA gene 2871964 2872220 257.0 + 0 ENSG00000284793.1 unprocessed_pseudogene AC270296.2 2 OTTHUMG00000192423.1 +5871 KZ208915.1 HAVANA gene 2865050 2872444 1271.0 - 0 ENSG00000285229.1 lincRNA LINCR-0001 2 OTTHUMG00000163782.1 ncRNA_host +5872 KZ208915.1 HAVANA gene 3009365 3010260 575.0 + 0 ENSG00000285320.1 processed_pseudogene AC270296.3 2 OTTHUMG00000160435.1 +5873 KZ208915.1 HAVANA gene 3067324 3071562 1576.0 + 0 ENSG00000285787.1 antisense AC275404.1 2 OTTHUMG00000193157.1 +5874 KZ208915.1 HAVANA gene 3200986 3230405 2041.0 + 0 ENSG00000285995.1 antisense AC270248.1 2 OTTHUMG00000192723.1 +5875 KZ208915.1 HAVANA gene 2918137 3294140 4162.0 - 0 ENSG00000285250.1 protein_coding MSRA 2 OTTHUMG00000090517.7 +5876 KZ208915.1 ENSEMBL gene 3445252 3445336 85.0 + 0 ENSG00000285161.1 miRNA MIR124-1 3 +5877 KZ208915.1 HAVANA gene 3443354 3448660 4136.0 + 0 ENSG00000284859.1 lincRNA LINC00599 2 OTTHUMG00000163734.2 ncRNA_host +5878 KZ208915.1 ENSEMBL gene 3609806 3609902 97.0 - 0 ENSG00000285033.1 miRNA MIR597 3 +5879 KZ208915.1 HAVANA gene 3693119 3693262 144.0 + 0 ENSG00000284854.1 unprocessed_pseudogene AC270292.1 2 OTTHUMG00000163733.1 +5880 KZ208915.1 ENSEMBL gene 3572330 3795529 3981.0 - 0 ENSG00000285372.1 protein_coding AC270292.3 3 ncRNA_host +5881 KZ208915.1 HAVANA gene 3894071 3897792 2035.0 - 0 ENSG00000284878.1 processed_pseudogene AC270292.2 2 OTTHUMG00000160394.1 +5882 KZ208915.1 HAVANA gene 3915256 3979561 1525.0 + 0 ENSG00000285359.1 lincRNA AC270263.2 2 OTTHUMG00000163668.1 +5883 KZ208915.1 ENSEMBL gene 3980336 3980441 106.0 + 0 ENSG00000285484.1 snRNA RNU6-526P 3 +5884 KZ208915.1 HAVANA gene 3993087 4000286 563.0 + 0 ENSG00000285061.1 lincRNA AC270263.1 2 OTTHUMG00000163667.1 +5885 KZ208915.1 ENSEMBL gene 4063985 4064091 107.0 + 0 ENSG00000284864.1 snRNA RNU6-1151P 3 +5886 KZ208915.1 HAVANA gene 4091344 4096236 422.0 + 0 ENSG00000285423.1 lincRNA AC270291.6 2 OTTHUMG00000163666.1 +5887 KZ208915.1 HAVANA gene 4118125 4118561 437.0 - 0 ENSG00000285185.1 processed_pseudogene AC270291.3 2 OTTHUMG00000163732.2 +5888 KZ208915.1 HAVANA gene 4169053 4171322 328.0 + 0 ENSG00000285127.1 lincRNA AC270291.2 2 OTTHUMG00000163664.2 +5889 KZ208915.1 HAVANA gene 4192959 4193517 559.0 - 0 ENSG00000284919.1 lincRNA AC270291.1 2 OTTHUMG00000189230.1 overlapping_locus +5890 KZ208915.1 ENSEMBL gene 4197658 4198029 372.0 - 0 ENSG00000285313.1 protein_coding AC270291.5 3 +5891 KZ208915.1 HAVANA gene 3925931 4199934 17427.0 - 0 ENSG00000285236.2 lincRNA AC270291.4 2 OTTHUMG00000163665.9 +5892 KZ208915.1 HAVANA gene 4206194 4210206 651.0 - 0 ENSG00000285002.1 antisense AC270254.1 2 OTTHUMG00000163659.2 +5893 KZ208915.1 HAVANA gene 4200055 4215375 5776.0 + 0 ENSG00000285343.1 protein_coding PPP1R3B 2 OTTHUMG00000129329.2 +5894 KZ208915.1 ENSEMBL gene 4260141 4260409 269.0 - 0 ENSG00000284887.1 misc_RNA RF00017 3 +5895 KZ208915.1 ENSEMBL gene 4279141 4279202 62.0 + 0 ENSG00000285167.1 snRNA RNU7-55P 3 +5896 KZ208915.1 ENSEMBL gene 4303460 4303533 74.0 - 0 ENSG00000285514.1 miRNA MIR4660 3 +5897 KZ208915.1 ENSEMBL gene 4343810 4348881 288.0 - 0 ENSG00000285223.1 protein_coding AC270253.2 3 +5898 KZ208915.1 ENSEMBL gene 4390244 4390377 134.0 - 0 ENSG00000285264.1 snoRNA RF00156 3 +5899 KZ208915.1 HAVANA gene 4372927 4390752 1442.0 - 0 ENSG00000285368.1 transcribed_processed_pseudogene RPL10P19 2 OTTHUMG00000163695.1 +5900 KZ208915.1 HAVANA gene 4417948 4418233 286.0 + 0 ENSG00000284860.1 processed_pseudogene AC270253.1 2 OTTHUMG00000184741.1 +5901 KZ208915.1 ENSEMBL gene 4456053 4456158 106.0 - 0 ENSG00000285414.1 snRNA RNU6-682P 3 +5902 KZ208915.1 ENSEMBL gene 4458913 4565972 3156.0 + 0 ENSG00000285022.1 protein_coding AC270282.1 3 +5903 KZ208915.1 HAVANA gene 4569517 4628432 925.0 + 0 ENSG00000284943.1 lincRNA AC270261.1 2 OTTHUMG00000163675.1 +5904 KZ208915.1 HAVANA gene 4632589 4638070 975.0 + 0 ENSG00000285290.1 unitary_pseudogene AC270261.2 2 OTTHUMG00000192251.1 +5905 KZ208915.1 HAVANA gene 4648021 4650189 2169.0 - 0 ENSG00000285098.1 protein_coding CLDN23 2 OTTHUMG00000163674.1 +5906 KZ208915.1 ENSEMBL gene 4769466 4769769 304.0 + 0 ENSG00000284857.1 misc_RNA RN7SL178P 3 +5907 KZ208915.1 HAVANA gene 4790001 4792233 579.0 - 0 ENSG00000285260.1 lincRNA AC270265.1 2 OTTHUMG00000163672.1 overlapping_locus +5908 KZ208915.1 HAVANA gene 4791160 4796382 397.0 + 0 ENSG00000285345.1 lincRNA AC270265.2 2 OTTHUMG00000163671.1 +5909 KZ208915.1 HAVANA gene 4890780 4895209 510.0 + 0 ENSG00000285450.1 lincRNA AC270259.1 2 OTTHUMG00000163731.1 +5910 KZ208915.1 HAVANA gene 5103198 5111862 1447.0 + 0 ENSG00000285027.1 transcribed_unprocessed_pseudogene ALG1L13P 2 OTTHUMG00000163708.2 +5911 KZ208915.1 HAVANA gene 5103000 5119270 4870.0 - 0 ENSG00000285119.1 transcribed_unprocessed_pseudogene FAM86B3P 2 OTTHUMG00000163669.6 +5912 KZ208915.1 HAVANA gene 5158673 5159333 661.0 + 0 ENSG00000284929.1 lincRNA AC270267.1 2 OTTHUMG00000187186.1 overlapping_locus +5913 KZ208915.1 ENSEMBL gene 5176841 5178768 282.0 - 0 ENSG00000284940.1 pseudogene AC270267.2 3 +5914 KZ208915.1 HAVANA gene 5294065 5294413 349.0 - 0 ENSG00000284972.1 processed_pseudogene AC270271.1 2 OTTHUMG00000164248.2 +5915 KZ208915.1 HAVANA gene 5320311 5323321 1395.0 + 0 ENSG00000285962.1 protein_coding AC270271.2 2 OTTHUMG00000165396.2 +5916 KZ208915.1 HAVANA gene 5408965 5412971 389.0 - 0 ENSG00000285432.1 protein_coding DEFB107A 2 OTTHUMG00000150013.1 +5917 KZ208915.1 ENSEMBL gene 5419265 5421092 234.0 - 0 ENSG00000285411.1 protein_coding DEFB105B 3 +5918 KZ208915.1 ENSEMBL gene 5422431 5426244 195.0 + 0 ENSG00000284937.2 protein_coding DEFB106B 3 +5919 KZ208915.1 ENSEMBL gene 5433778 5438485 216.0 + 0 ENSG00000285356.1 protein_coding DEFB104B 3 +5920 KZ208915.1 HAVANA gene 5478491 5479952 518.0 + 0 ENSG00000284978.1 protein_coding DEFB103A 2 OTTHUMG00000143855.2 +5921 KZ208915.1 HAVANA gene 5488291 5489843 1553.0 - 0 ENSG00000285066.1 processed_pseudogene HSPD1P2 2 OTTHUMG00000165400.1 +5922 KZ208915.1 HAVANA gene 5491916 5493994 380.0 + 0 ENSG00000285181.1 protein_coding DEFB4A 2 OTTHUMG00000129314.1 +5923 KZ208915.1 ENSEMBL gene 5531363 5535722 219.0 - 0 ENSG00000284907.1 protein_coding AC270273.1 3 +5924 KZ208915.1 ENSEMBL gene 5547581 5550837 888.0 + 0 ENSG00000285286.1 protein_coding AC270273.3 3 +5925 KZ208915.1 HAVANA gene 5565792 5566983 1192.0 - 0 ENSG00000285097.1 processed_pseudogene AC270273.2 2 OTTHUMG00000165293.1 +5926 KZ208915.1 HAVANA gene 5570104 5572125 2022.0 - 0 ENSG00000285497.1 protein_coding USP17L7 2 OTTHUMG00000165294.6 retrogene +5927 KZ208915.1 HAVANA gene 5574835 5576744 1910.0 - 0 ENSG00000284990.1 protein_coding USP17L2 2 OTTHUMG00000165295.4 retrogene +5928 KZ208915.1 HAVANA gene 5588565 5588804 240.0 - 0 ENSG00000285038.1 processed_pseudogene DEFB109D 2 OTTHUMG00000165296.3 +5929 KZ208915.1 ENSEMBL gene 5621159 5631606 990.0 - 0 ENSG00000285397.1 protein_coding AC270273.4 3 +5930 KZ208915.1 ENSEMBL gene 5658089 5658620 528.0 - 0 ENSG00000284757.1 pseudogene AC270293.1 3 +5931 KZ208915.1 ENSEMBL gene 5672208 5672378 171.0 + 0 ENSG00000285186.1 protein_coding AC270293.2 3 +5932 KZ208915.1 HAVANA gene 5765752 5766532 781.0 - 0 ENSG00000284920.1 processed_pseudogene RPS3AP34 2 OTTHUMG00000158124.1 +5933 KZ208915.1 HAVANA gene 5775680 5776456 186.0 + 0 ENSG00000284909.1 processed_pseudogene AC275565.2 2 OTTHUMG00000165464.1 +5934 KZ208915.1 HAVANA gene 5796571 5796789 219.0 - 0 ENSG00000284992.1 transcribed_unprocessed_pseudogene AC275565.3 2 OTTHUMG00000192219.1 overlapping_locus +5935 KZ208915.1 HAVANA gene 5802705 5802923 219.0 - 0 ENSG00000285037.1 transcribed_unprocessed_pseudogene AC275565.5 2 OTTHUMG00000192220.1 overlapping_locus +5936 KZ208915.1 HAVANA gene 5823886 5824666 781.0 - 0 ENSG00000284751.1 processed_pseudogene RPS3AP35 2 OTTHUMG00000158126.1 +5937 KZ208915.1 HAVANA gene 5833839 5834013 175.0 + 0 ENSG00000284865.1 processed_pseudogene AC275565.1 2 OTTHUMG00000165465.1 +5938 KZ208915.1 HAVANA gene 5854838 5855056 219.0 - 0 ENSG00000284995.1 transcribed_unprocessed_pseudogene AC275565.4 2 OTTHUMG00000192221.1 overlapping_locus +5939 KZ208915.1 HAVANA gene 5879513 5880512 1000.0 - 0 ENSG00000284822.1 unprocessed_pseudogene OR7E8P 2 OTTHUMG00000165467.1 +5940 KZ208915.1 HAVANA gene 5891666 5892632 967.0 - 0 ENSG00000285419.1 unprocessed_pseudogene OR7E15P 2 OTTHUMG00000165468.1 +5941 KZ208915.1 HAVANA gene 5898414 5899404 991.0 - 0 ENSG00000285315.1 unprocessed_pseudogene OR7E10P 2 OTTHUMG00000165469.1 +5942 KZ208915.1 ENSEMBL gene 5914486 5914544 59.0 + 0 ENSG00000284785.1 miRNA MIR5692A2 3 +5943 KZ208915.1 ENSEMBL gene 5922585 5922647 63.0 + 0 ENSG00000284855.1 miRNA MIR3926-2 3 +5944 KZ208915.1 ENSEMBL gene 5922580 5922652 73.0 - 0 ENSG00000285270.1 miRNA MIR3926-1 3 +5945 KZ208915.1 HAVANA gene 5917241 5951436 5685.0 - 0 ENSG00000285360.1 protein_coding LONRF1 2 OTTHUMG00000165475.2 ncRNA_host +5946 KZ208915.1 HAVANA gene 5961187 6006851 1259.0 - 0 ENSG00000285506.1 lincRNA AC270298.1 2 OTTHUMG00000165476.1 +5947 KZ208915.1 HAVANA gene 5989610 6013667 504.0 + 0 ENSG00000285297.1 lincRNA LINC00681 2 OTTHUMG00000129516.3 +5948 KZ208915.1 HAVANA gene 6153824 6157633 1418.0 + 0 ENSG00000284812.1 unprocessed_pseudogene AC270289.1 2 OTTHUMG00000160399.2 overlapping_locus +5949 KZ208915.1 ENSEMBL gene 6201611 6217462 1362.0 + 0 ENSG00000284872.1 protein_coding AC270289.2 3 +5950 KZ208915.1 ENSEMBL gene 6239797 6239903 107.0 + 0 ENSG00000284861.1 snRNA RNU6-842P 3 +5951 KZ208915.1 ENSEMBL gene 6355801 6355902 102.0 + 0 ENSG00000284761.1 misc_RNA RF00019 3 +5952 KZ208916.1 ENSEMBL gene 2459 2524 66.0 - 0 ENSG00000284767.1 miRNA MIR3649 3 +5953 KZ208916.1 HAVANA gene 37974 40188 1979.0 - 0 ENSG00000285310.1 processed_pseudogene AC005183.2 2 OTTHUMG00000184716.1 +5954 KZ208916.1 HAVANA gene 83341 89243 3470.0 - 0 ENSG00000285682.1 antisense AC005343.2 2 OTTHUMG00000193299.1 +5955 KZ208916.1 HAVANA gene 99375 100155 781.0 - 0 ENSG00000284817.1 processed_pseudogene RPS4XP14 2 OTTHUMG00000157376.1 +5956 KZ208916.1 HAVANA gene 30718 130822 5878.0 + 0 ENSG00000285070.1 protein_coding ADIPOR2 2 OTTHUMG00000130139.2 +5957 KZ208916.1 HAVANA gene 162411 178896 4277.0 + 0 ENSG00000285383.1 protein_coding LRTM2 2 OTTHUMG00000168088.3 +5958 KZ208916.1 HAVANA gene 134101 260980 7639.0 - 0 ENSG00000284953.1 protein_coding CACNA2D4 2 OTTHUMG00000168111.5 +5959 KZ208916.1 HAVANA gene 260095 265011 315.0 + 0 ENSG00000285149.1 antisense AC005342.3 2 OTTHUMG00000168135.1 +5960 KZ208916.1 HAVANA gene 271346 278718 2350.0 - 0 ENSG00000285233.1 lincRNA LINC00940 2 OTTHUMG00000168112.1 +5961 KZ208916.1 HAVANA gene 288198 346679 4609.0 - 0 ENSG00000284850.1 protein_coding DCP1B 2 OTTHUMG00000168113.3 +5962 KZ208916.1 HAVANA gene 346810 353536 629.0 + 0 ENSG00000285355.1 antisense AC005342.4 2 OTTHUMG00000168336.1 overlapping_locus +5963 KZ208916.1 HAVANA gene 360357 362676 687.0 + 0 ENSG00000285291.1 sense_intronic CACNA1C-IT1 2 OTTHUMG00000168337.1 overlapping_locus +5964 KZ208916.1 HAVANA gene 390496 391607 589.0 + 0 ENSG00000285266.1 sense_intronic CACNA1C-IT2 2 OTTHUMG00000168338.1 overlapping_locus +5965 KZ208916.1 HAVANA gene 559606 560064 459.0 - 0 ENSG00000285324.1 antisense AC005344.2 2 OTTHUMG00000188146.1 +5966 KZ208916.1 HAVANA gene 562681 565623 735.0 - 0 ENSG00000285107.1 antisense CACNA1C-AS4 2 OTTHUMG00000168136.1 +5967 KZ208916.1 HAVANA gene 617892 637053 622.0 + 0 ENSG00000284775.1 sense_intronic CACNA1C-IT3 2 OTTHUMG00000168201.1 overlapping_locus +5968 KZ208916.1 HAVANA gene 680977 683818 1546.0 - 0 ENSG00000285924.1 antisense AC005293.2 2 OTTHUMG00000193273.1 +5969 KZ208916.1 HAVANA gene 788305 805508 3191.0 - 0 ENSG00000285983.1 antisense AC005414.2 2 OTTHUMG00000192786.1 +5970 KZ208916.1 HAVANA gene 951466 955556 444.0 - 0 ENSG00000284942.1 antisense CACNA1C-AS3 2 OTTHUMG00000168137.1 +5971 KZ208916.1 HAVANA gene 1008053 1009085 732.0 + 0 ENSG00000284759.1 processed_pseudogene AC007618.2 2 OTTHUMG00000150244.2 overlapping_locus +5972 KZ208916.1 HAVANA gene 1016616 1020336 609.0 - 0 ENSG00000285101.1 antisense CACNA1C-AS2 2 OTTHUMG00000168138.1 +5973 KZ208916.1 HAVANA gene 1024117 1039316 2639.0 - 0 ENSG00000285335.1 antisense CACNA1C-AS1 2 OTTHUMG00000168139.1 +5974 KZ208916.1 HAVANA gene 312930 1046066 19103.0 + 0 ENSG00000285479.1 protein_coding CACNA1C 2 OTTHUMG00000150243.11 overlapping_locus +5975 KZ208917.1 ENSEMBL gene 10678 10788 111.0 + 0 ENSG00000285481.1 snRNA RNU6-1004P 3 +5976 KZ208917.1 ENSEMBL gene 32708 47411 714.0 + 0 ENSG00000285150.1 protein_coding ORAI1 3 +5977 KZ208919.1 HAVANA gene 20166 63991 3312.0 - 0 ENSG00000285281.1 protein_coding SGPP1 2 OTTHUMG00000029080.3 +5978 KZ208919.1 HAVANA gene 70649 71875 1227.0 + 0 ENSG00000284819.1 processed_pseudogene AL161670.3 2 OTTHUMG00000171132.2 +5979 KZ208919.1 ENSEMBL gene 72396 72457 62.0 + 0 ENSG00000284769.1 snRNA RNU7-116P 3 +5980 KZ208919.1 HAVANA gene 97965 98101 137.0 + 0 ENSG00000285008.1 processed_pseudogene AL161670.4 2 OTTHUMG00000171133.2 +5981 KZ208919.1 HAVANA gene 151199 151385 187.0 + 0 ENSG00000285273.1 processed_pseudogene RPS28P1 2 OTTHUMG00000184599.1 +5982 KZ208920.1 HAVANA gene 30017 30720 704.0 - 0 ENSG00000285111.1 processed_transcript AL160237.5 2 OTTHUMG00000170673.1 +5983 KZ208920.1 HAVANA gene 50215 52129 1915.0 + 0 ENSG00000284831.1 processed_pseudogene BRD7P1 2 OTTHUMG00000170674.1 +5984 KZ208920.1 HAVANA gene 68641 69977 1013.0 + 0 ENSG00000285274.1 unprocessed_pseudogene AL160237.6 2 OTTHUMG00000184439.1 +5985 KZ208920.1 ENSEMBL gene 92909 93215 307.0 + 0 ENSG00000284911.1 misc_RNA RN7SKP205 3 +5986 KZ208920.1 HAVANA gene 118260 128375 472.0 - 0 ENSG00000284904.1 unprocessed_pseudogene AL160237.4 2 OTTHUMG00000171339.3 +5987 KZ208920.1 HAVANA gene 176917 183407 809.0 - 0 ENSG00000285965.1 lincRNA LO018686.1 2 OTTHUMG00000192706.1 +5988 KZ208920.1 HAVANA gene 223226 235547 937.0 - 0 ENSG00000285289.1 lincRNA LINC00596 2 OTTHUMG00000171723.3 +5989 KZ208920.1 HAVANA gene 239710 295173 3593.0 - 0 ENSG00000285282.1 antisense DHRS4-AS1 2 OTTHUMG00000171901.1 +5990 KZ208920.1 HAVANA gene 254565 312739 2305.0 + 0 ENSG00000284807.1 protein_coding DHRS4 2 OTTHUMG00000028777.5 +5991 KZ208920.1 HAVANA gene 337431 352006 1272.0 + 0 ENSG00000285036.1 transcribed_unprocessed_pseudogene DHRS4L1 2 OTTHUMG00000172193.3 overlapping_locus +5992 KZ208920.1 HAVANA gene 313391 352355 1382.0 + 0 ENSG00000284898.1 processed_transcript AL136295.11 2 OTTHUMG00000192522.1 overlapping_locus +5993 KZ208920.1 HAVANA gene 352978 370706 6665.0 + 0 ENSG00000284765.1 protein_coding CARMIL3 2 OTTHUMG00000172023.1 +5994 KZ208920.1 HAVANA gene 371815 379078 5996.0 + 0 ENSG00000285221.1 protein_coding CPNE6 2 OTTHUMG00000028781.7 +5995 KZ208920.1 HAVANA gene 395031 411576 4189.0 + 0 ENSG00000285241.1 protein_coding PCK2 2 OTTHUMG00000028791.9 +5996 KZ208920.1 HAVANA gene 381085 415992 3113.0 - 0 ENSG00000285493.1 protein_coding NRL 2 OTTHUMG00000028789.5 +5997 KZ208920.1 HAVANA gene 415173 426220 6350.0 + 0 ENSG00000284796.1 protein_coding DCAF11 2 OTTHUMG00000028793.9 overlapping_locus +5998 KZ208920.1 HAVANA gene 421934 432807 850.0 + 0 ENSG00000284818.1 protein_coding AL136295.9 2 OTTHUMG00000172021.3 overlapping_locus +5999 KZ208920.1 HAVANA gene 432253 433827 1355.0 + 0 ENSG00000285321.1 protein_coding FITM1 2 OTTHUMG00000133476.2 overlapping_locus +6000 KZ208920.1 HAVANA gene 437136 439945 1781.0 + 0 ENSG00000284916.1 protein_coding PSME1 2 OTTHUMG00000028795.3 +6001 KZ208920.1 HAVANA gene 440423 441422 747.0 + 0 ENSG00000285298.1 lincRNA AL136295.13 2 OTTHUMG00000171965.1 +6002 KZ208920.1 HAVANA gene 439937 442566 1588.0 - 0 ENSG00000285377.1 protein_coding EMC9 2 OTTHUMG00000028796.5 +6003 KZ208920.1 ENSEMBL gene 444467 444543 77.0 - 0 ENSG00000285146.1 miRNA MIR7703 3 +6004 KZ208920.1 HAVANA gene 444340 448548 3582.0 - 0 ENSG00000284889.1 protein_coding PSME2 2 OTTHUMG00000028797.6 ncRNA_host +6005 KZ208920.1 ENSEMBL gene 459581 459700 120.0 + 0 ENSG00000285306.1 rRNA_pseudogene RNA5SP383 3 +6006 KZ208920.1 HAVANA gene 447661 461639 4982.0 + 0 ENSG00000285152.1 protein_coding RNF31 2 OTTHUMG00000028798.7 overlapping_locus +6007 KZ208920.1 HAVANA gene 462031 467543 3794.0 + 0 ENSG00000285048.1 protein_coding IRF9 2 OTTHUMG00000028799.4 overlapping_locus +6008 KZ208920.1 HAVANA gene 452196 468380 4798.0 + 0 ENSG00000284845.1 protein_coding AL136295.10 2 OTTHUMG00000171951.1 overlapping_locus +6009 KZ208920.1 HAVANA gene 472831 481235 3844.0 + 0 ENSG00000285007.1 protein_coding REC8 2 OTTHUMG00000171916.7 +6010 KZ208920.1 HAVANA gene 481197 489942 5007.0 - 0 ENSG00000285248.1 protein_coding IPO4 2 OTTHUMG00000028801.6 overlapping_locus +6011 KZ208920.1 HAVANA gene 481373 491394 4351.0 - 0 ENSG00000285125.1 protein_coding AL136295.12 2 OTTHUMG00000170680.2 overlapping_locus +6012 KZ208920.1 HAVANA gene 490121 496665 3536.0 - 0 ENSG00000285465.1 protein_coding TM9SF1 2 OTTHUMG00000029322.7 overlapping_locus +6013 KZ208920.1 HAVANA gene 499411 500068 658.0 + 0 ENSG00000284802.1 lincRNA AL136295.8 2 OTTHUMG00000187063.1 +6014 KZ208920.1 HAVANA gene 502590 503789 1200.0 - 0 ENSG00000285309.1 sense_intronic AL136295.14 2 OTTHUMG00000187065.1 overlapping_locus +6015 KZ208920.1 HAVANA gene 506675 509340 1924.0 + 0 ENSG00000285140.1 protein_coding TSSK4 2 OTTHUMG00000029323.5 +6016 KZ208920.1 HAVANA gene 490135 514451 2740.0 - 0 ENSG00000285502.1 protein_coding AL136295.15 2 OTTHUMG00000167035.1 overlapping_locus +6017 KZ208920.1 HAVANA gene 510561 514847 2413.0 - 0 ENSG00000285302.1 protein_coding CHMP4A 2 OTTHUMG00000167036.10 overlapping_locus +6018 KZ208920.1 HAVANA gene 510624 516965 3045.0 - 0 ENSG00000285296.1 processed_transcript AL096870.3 2 OTTHUMG00000029324.4 overlapping_locus +6019 KZ208920.1 HAVANA gene 514915 517048 1072.0 - 0 ENSG00000285200.1 protein_coding MDP1 2 OTTHUMG00000133477.4 overlapping_locus +6020 KZ208920.1 HAVANA gene 514933 533330 1051.0 - 0 ENSG00000285425.1 protein_coding NEDD8-MDP1 2 OTTHUMG00000167107.3 overlapping_locus +6021 KZ208920.1 HAVANA gene 517830 533432 3879.0 - 0 ENSG00000285246.1 protein_coding NEDD8 2 OTTHUMG00000029325.5 overlapping_locus +6022 KZ208920.1 HAVANA gene 533400 540220 3640.0 + 0 ENSG00000284752.1 protein_coding GMPR2 2 OTTHUMG00000171912.8 +6023 KZ208920.1 HAVANA gene 540621 543652 2712.0 - 0 ENSG00000284915.1 protein_coding TINF2 2 OTTHUMG00000171849.6 +6024 KZ208920.1 HAVANA gene 550092 565410 3735.0 - 0 ENSG00000285348.1 protein_coding TGM1 2 OTTHUMG00000029329.8 +6025 KZ208920.1 HAVANA gene 566516 572717 3545.0 - 0 ENSG00000285193.1 protein_coding RABGGTA 2 OTTHUMG00000171838.7 +6026 KZ208920.1 HAVANA gene 591576 600811 5002.0 - 0 ENSG00000284868.1 protein_coding DHRS1 2 OTTHUMG00000029333.4 +6027 KZ208920.1 HAVANA gene 600840 610102 6033.0 + 0 ENSG00000285326.2 protein_coding NOP9 2 OTTHUMG00000029342.5 overlapping_locus +6028 KZ208920.1 HAVANA gene 606074 612408 3198.0 - 0 ENSG00000285199.1 protein_coding CIDEB 2 OTTHUMG00000171555.3 +6029 KZ208920.1 HAVANA gene 606712 613031 3233.0 + 0 ENSG00000285203.1 protein_coding LTB4R2 2 OTTHUMG00000186500.3 overlapping_locus +6030 KZ208920.1 HAVANA gene 612428 619014 4465.0 + 0 ENSG00000285456.1 protein_coding LTB4R 2 OTTHUMG00000029346.6 overlapping_locus +6031 KZ208920.1 HAVANA gene 619327 636071 8067.0 - 0 ENSG00000284814.1 protein_coding ADCY4 2 OTTHUMG00000029347.9 overlapping_locus +6032 KZ208920.1 HAVANA gene 633288 638360 930.0 - 0 ENSG00000285511.1 protein_coding AL096870.4 2 OTTHUMG00000171754.1 overlapping_locus +6033 KZ208920.1 HAVANA gene 636999 641023 3256.0 - 0 ENSG00000285379.1 protein_coding RIPK3 2 OTTHUMG00000029349.4 overlapping_locus +6034 KZ208920.1 ENSEMBL gene 653035 653135 101.0 - 0 ENSG00000285386.1 snRNA RF00026 3 +6035 KZ208920.1 HAVANA gene 666651 680582 8437.0 + 0 ENSG00000285485.1 protein_coding NFATC4 2 OTTHUMG00000029351.12 +6036 KZ208921.1 ENSEMBL gene 22677 23431 753.0 - 0 ENSG00000285337.1 pseudogene FO681524.1 3 +6037 KZ208921.1 ENSEMBL gene 34367 40139 789.0 - 0 ENSG00000284810.1 protein_coding CTRB2 3 +6038 KZ208921.1 ENSEMBL gene 52018 55075 789.0 + 0 ENSG00000285346.1 protein_coding CTRB1 3 +6039 KZ208921.1 HAVANA gene 56290 58413 1441.0 + 0 ENSG00000285350.1 transcribed_unprocessed_pseudogene FO681525.1 2 OTTHUMG00000159270.3 overlapping_locus +6040 KZ208922.1 HAVANA gene 7144 8038 895.0 + 0 ENSG00000285060.1 processed_pseudogene RPS2P6 2 OTTHUMG00000158263.1 +6041 KZ208922.1 HAVANA gene 72440 74015 1576.0 + 0 ENSG00000285389.1 TEC AC091305.2 2 OTTHUMG00000178786.1 +6042 KZ208924.1 HAVANA gene 4659 15725 659.0 - 0 ENSG00000285001.1 lincRNA TTTY13 2 OTTHUMG00000043583.1 +6043 KZ208924.1 HAVANA gene 52742 53074 333.0 - 0 ENSG00000285019.1 processed_pseudogene ELOCP5 2 OTTHUMG00000185064.1 +6044 KZ208924.1 HAVANA gene 58534 60100 1567.0 - 0 ENSG00000285196.1 unprocessed_pseudogene CDY10P 2 OTTHUMG00000043576.1 +6045 KZ208924.1 HAVANA gene 82985 95067 1766.0 + 0 ENSG00000285308.1 unprocessed_pseudogene USP9YP3 2 OTTHUMG00000043577.1 +6046 KZ208924.1 HAVANA gene 98305 102177 500.0 - 0 ENSG00000285028.1 unprocessed_pseudogene USP9YP8 2 OTTHUMG00000043579.1 +6047 KZ208924.1 HAVANA gene 117629 119279 1651.0 + 0 ENSG00000285455.1 unprocessed_pseudogene CDY11P 2 OTTHUMG00000043581.1 +6048 KZ208924.1 HAVANA gene 198642 199281 318.0 - 0 ENSG00000285477.1 unprocessed_pseudogene OFD1P16Y 2 OTTHUMG00000188103.1 +6049 KZ559102.1 ENSEMBL gene 36336 36417 82.0 + 0 ENSG00000285406.1 miRNA MIR4789 3 +6050 KZ559102.1 ENSEMBL gene 70759 70860 102.0 - 0 ENSG00000285461.1 snRNA RNU6-1233P 3 +6051 KZ559103.1 ENSEMBL gene 11106 11208 103.0 - 0 ENSG00000284805.1 snRNA RNU6-823P 3 +6052 KZ559103.1 HAVANA gene 50508 63551 696.0 - 0 ENSG00000285949.1 lincRNA AC084784.1 2 OTTHUMG00000193187.1 +6053 KZ559103.1 HAVANA gene 22550 277765 2421.0 + 0 ENSG00000284869.1 protein_coding EEFSEC 2 OTTHUMG00000159659.3 +6054 KZ559104.1 HAVANA gene 43650 44010 361.0 - 0 ENSG00000284833.1 processed_pseudogene ABBA01026962.1 2 OTTHUMG00000159022.1 +6055 KZ559104.1 HAVANA gene 44976 45914 939.0 - 0 ENSG00000285086.1 processed_pseudogene WDR82P1 2 OTTHUMG00000159020.2 +6056 KZ559105.1 HAVANA gene 4131 16595 3783.0 - 0 ENSG00000284925.1 protein_coding GCSAM 2 OTTHUMG00000159231.4 +6057 KZ559105.1 HAVANA gene 16713 18649 1937.0 + 0 ENSG00000285293.1 antisense TBILA 2 OTTHUMG00000175748.1 +6058 KZ559105.1 ENSEMBL gene 44825 45657 828.0 - 0 ENSG00000285174.1 pseudogene AC240508.1 3 +6059 KZ559105.1 HAVANA gene 78218 78736 519.0 - 0 ENSG00000285255.1 processed_pseudogene AC128688.2 2 OTTHUMG00000159238.1 overlapping_locus +6060 KZ559105.1 HAVANA gene 24177 186996 4250.0 - 0 ENSG00000285044.1 protein_coding SLC9C1 2 OTTHUMG00000159245.3 overlapping_locus +6061 KZ559106.1 HAVANA gene 64218 64371 154.0 + 0 ENSG00000285440.1 processed_pseudogene AC004852.6 2 OTTHUMG00000184488.1 +6062 KZ559106.1 HAVANA gene 151144 151469 326.0 - 0 ENSG00000285110.1 processed_pseudogene AC004852.5 2 OTTHUMG00000187664.1 +6063 KZ559106.1 HAVANA gene 62753 170053 3362.0 - 0 ENSG00000284921.1 lincRNA AC004852.4 2 OTTHUMG00000189027.1 +6064 KZ559107.1 HAVANA gene 4067 5768 1122.0 + 0 ENSG00000285363.1 processed_pseudogene MTRF1LP2 2 OTTHUMG00000160430.1 +6065 KZ559107.1 HAVANA gene 32548 71261 2934.0 - 0 ENSG00000285114.1 protein_coding GSDMC 2 OTTHUMG00000164851.1 +6066 KZ559108.1 HAVANA gene 22724 274568 2366.0 + 0 ENSG00000285164.1 transcribed_unprocessed_pseudogene AC136759.2 2 OTTHUMG00000166650.5 +6067 KZ559108.1 HAVANA gene 281927 289702 795.0 + 0 ENSG00000285500.1 unprocessed_pseudogene AC130364.4 2 OTTHUMG00000166761.2 +6068 KZ559108.1 HAVANA gene 288988 290873 604.0 - 0 ENSG00000285429.1 unprocessed_pseudogene AC130364.3 2 OTTHUMG00000166902.2 +6069 KZ559108.1 HAVANA gene 297289 303469 1353.0 - 0 ENSG00000285143.1 unprocessed_pseudogene TRIM51FP 2 OTTHUMG00000166724.3 +6070 KZ559109.1 ENSEMBL gene 4297 4414 118.0 - 0 ENSG00000285092.1 snRNA RNU5E-10P 3 +6071 KZ559109.1 HAVANA gene 5551 6103 553.0 + 0 ENSG00000285139.1 antisense KF459542.2 2 OTTHUMG00000187459.2 overlapping_locus +6072 KZ559109.1 HAVANA gene 23 6841 3302.0 - 0 ENSG00000284900.1 protein_coding KBTBD4 2 OTTHUMG00000166894.4 ncRNA_host +6073 KZ559109.1 HAVANA gene 14519 17020 1388.0 + 0 ENSG00000284938.1 protein_coding FAM180B 2 OTTHUMG00000167871.1 +6074 KZ559109.1 HAVANA gene 17490 22485 1664.0 - 0 ENSG00000284838.1 protein_coding C1QTNF4 2 OTTHUMG00000166895.1 +6075 KZ559109.1 HAVANA gene 45141 74989 2897.0 - 0 ENSG00000285121.1 protein_coding MTCH2 2 OTTHUMG00000166926.4 +6076 KZ559109.1 HAVANA gene 91958 147756 5483.0 - 0 ENSG00000285501.1 protein_coding AGBL2 2 OTTHUMG00000165368.7 +6077 KZ559109.1 ENSEMBL gene 159261 159359 99.0 - 0 ENSG00000285489.1 misc_RNA RF00019 3 +6078 KZ559109.1 HAVANA gene 148884 199810 7596.0 - 0 ENSG00000285182.1 protein_coding FNBP4 2 OTTHUMG00000166533.8 ncRNA_host +6079 KZ559109.1 HAVANA gene 228536 228746 211.0 + 0 ENSG00000285503.1 processed_pseudogene AC021443.2 2 OTTHUMG00000184764.1 +6080 KZ559109.1 ENSEMBL gene 236663 236769 107.0 - 0 ENSG00000285046.1 rRNA_pseudogene RNA5SP340 3 +6081 KZ559109.1 ENSEMBL gene 252567 252656 90.0 - 0 ENSG00000285031.1 misc_RNA RF00019 3 +6082 KZ559109.1 HAVANA gene 273691 274049 359.0 + 0 ENSG00000284852.1 processed_pseudogene YPEL5P2 2 OTTHUMG00000184763.1 +6083 KZ559110.1 HAVANA gene 4544 4940 397.0 - 0 ENSG00000284890.1 processed_pseudogene AP000648.4 2 OTTHUMG00000167659.1 +6084 KZ559110.1 ENSEMBL gene 24514 24584 71.0 + 0 ENSG00000285180.1 snoRNA RF00275 3 +6085 KZ559110.1 HAVANA gene 31781 32184 404.0 + 0 ENSG00000285421.1 TEC AP000648.6 2 OTTHUMG00000167660.1 +6086 KZ559110.1 HAVANA gene 37638 99017 7254.0 + 0 ENSG00000285516.1 protein_coding NAALAD2 2 OTTHUMG00000166368.5 +6087 KZ559110.1 HAVANA gene 99737 104243 4507.0 + 0 ENSG00000285305.1 TEC AP000648.5 2 OTTHUMG00000167661.2 +6088 KZ559110.1 HAVANA gene 107283 129487 10655.0 - 0 ENSG00000285023.1 protein_coding CHORDC1 2 OTTHUMG00000167305.3 +6089 KZ559110.1 HAVANA gene 129276 132661 3386.0 + 0 ENSG00000285065.1 TEC AP002364.2 2 OTTHUMG00000167306.1 +6090 KZ559110.1 HAVANA gene 219494 221106 1613.0 + 0 ENSG00000284997.1 processed_pseudogene TUBAP2 2 OTTHUMG00000167307.1 overlapping_locus +6091 KZ559111.1 HAVANA gene 28087 47135 1116.0 + 0 ENSG00000285029.1 protein_coding OOSP1 2 OTTHUMG00000192599.1 +6092 KZ559111.1 HAVANA gene 53688 59801 577.0 + 0 ENSG00000285375.1 protein_coding OOSP4A 2 OTTHUMG00000187492.2 overlapping_locus +6093 KZ559111.1 HAVANA gene 32534 59801 888.0 + 0 ENSG00000285510.1 processed_transcript OOSP1 2 OTTHUMG00000192600.1 overlapping_locus +6094 KZ559111.1 HAVANA gene 67675 120732 1701.0 + 0 ENSG00000285463.1 protein_coding OOSP4B 2 OTTHUMG00000167378.2 +6095 KZ559111.1 HAVANA gene 129930 137702 1897.0 + 0 ENSG00000285422.1 protein_coding OOSP2 2 OTTHUMG00000167379.2 +6096 KZ559111.1 ENSEMBL gene 155035 164111 707.0 + 0 ENSG00000284903.1 protein_coding AC226593.1 3 +6097 KZ559111.1 HAVANA gene 171239 172278 737.0 + 0 ENSG00000284935.1 processed_pseudogene AC226593.2 2 OTTHUMG00000167381.1 +6098 KZ559112.1 ENSEMBL gene 41978 42728 750.0 - 0 ENSG00000285148.1 pseudogene AC079949.3 3 +6099 KZ559112.1 HAVANA gene 91596 93076 616.0 - 0 ENSG00000285357.1 lincRNA AC195745.1 2 OTTHUMG00000168461.1 +6100 KZ559113.1 HAVANA gene 83556 86310 2755.0 - 0 ENSG00000285194.1 TEC AC109446.8 2 OTTHUMG00000176102.1 +6101 KZ559113.1 HAVANA gene 95612 96188 497.0 - 0 ENSG00000285145.1 unprocessed_pseudogene AC109446.7 2 OTTHUMG00000177271.1 +6102 KZ559113.1 HAVANA gene 97463 97682 220.0 - 0 ENSG00000285099.1 processed_pseudogene AC109446.6 2 OTTHUMG00000177272.1 +6103 KZ559113.1 HAVANA gene 135765 139997 641.0 + 0 ENSG00000284910.1 antisense AC109446.5 2 OTTHUMG00000177273.1 +6104 KZ559113.1 HAVANA gene 194124 195493 1370.0 - 0 ENSG00000284843.1 TEC AC099494.4 2 OTTHUMG00000177590.1 overlapping_locus +6105 KZ559113.1 HAVANA gene 228284 229261 978.0 - 0 ENSG00000285003.1 TEC AC099494.5 2 OTTHUMG00000177274.1 overlapping_locus +6106 KZ559113.1 HAVANA gene 250935 252656 1722.0 - 0 ENSG00000285009.1 TEC AC099494.6 2 OTTHUMG00000177275.1 overlapping_locus +6107 KZ559113.1 HAVANA gene 447086 447641 556.0 - 0 ENSG00000285170.1 sense_intronic AC009152.2 2 OTTHUMG00000186791.1 overlapping_locus +6108 KZ559113.1 HAVANA gene 454731 457497 1185.0 + 0 ENSG00000285903.1 lincRNA AC009152.4 2 OTTHUMG00000192886.1 +6109 KZ559113.1 HAVANA gene 103030 472142 11004.0 - 0 ENSG00000285395.1 protein_coding XYLT1 2 OTTHUMG00000129975.3 overlapping_locus +6110 KZ559114.1 HAVANA gene 5709 6388 624.0 + 0 ENSG00000285039.1 antisense AC011120.2 2 OTTHUMG00000178318.1 +6111 KZ559115.1 HAVANA gene 43879 103333 1391.0 - 0 ENSG00000285384.1 antisense SLC14A2-AS1 2 OTTHUMG00000179057.1 +6112 KZ559115.1 HAVANA gene 111696 123939 735.0 - 0 ENSG00000285874.1 lincRNA AC021517.3 2 OTTHUMG00000193021.1 +6113 KZ559115.1 HAVANA gene 103460 149969 2607.0 + 0 ENSG00000284955.1 sense_intronic AC091151.2 2 OTTHUMG00000179041.1 overlapping_locus +6114 KZ559115.1 HAVANA gene 127335 170297 726.0 + 0 ENSG00000285232.1 sense_intronic AC091151.3 2 OTTHUMG00000179042.1 overlapping_locus +6115 KZ559116.1 HAVANA gene 36148 37883 574.0 + 0 ENSG00000285208.1 lincRNA AP005057.2 2 OTTHUMG00000178382.1 +6116 chr1 HAVANA gene 11869 14409 1735.0 + 0 ENSG00000223972.5 transcribed_unprocessed_pseudogene DDX11L1 2 OTTHUMG00000000961.2 +6117 chr1 ENSEMBL gene 17369 17436 68.0 - 0 ENSG00000278267.1 miRNA MIR6859-1 3 +6118 chr1 HAVANA gene 14404 29570 1351.0 - 0 ENSG00000227232.5 unprocessed_pseudogene WASH7P 2 OTTHUMG00000000958.1 +6119 chr1 ENSEMBL gene 30366 30503 138.0 + 0 ENSG00000284332.1 miRNA MIR1302-2 3 +6120 chr1 HAVANA gene 29554 31109 1021.0 + 0 ENSG00000243485.5 lincRNA MIR1302-2HG 2 OTTHUMG00000000959.2 ncRNA_host +6121 chr1 HAVANA gene 34554 36081 1219.0 - 0 ENSG00000237613.2 lincRNA FAM138A 2 OTTHUMG00000000960.1 +6122 chr1 HAVANA gene 52473 53312 840.0 + 0 ENSG00000268020.3 unprocessed_pseudogene OR4G4P 2 OTTHUMG00000185779.1 +6123 chr1 HAVANA gene 57598 64116 1414.0 + 0 ENSG00000240361.2 transcribed_unprocessed_pseudogene OR4G11P 2 OTTHUMG00000001095.3 +6124 chr1 HAVANA gene 65419 71585 2618.0 + 0 ENSG00000186092.6 protein_coding OR4F5 2 OTTHUMG00000001094.4 +6125 chr1 HAVANA gene 89551 91105 1319.0 - 0 ENSG00000239945.1 lincRNA AL627309.3 2 OTTHUMG00000001097.2 overlapping_locus +6126 chr1 HAVANA gene 89295 133723 3726.0 - 0 ENSG00000238009.6 lincRNA AL627309.1 2 OTTHUMG00000001096.2 overlapping_locus +6127 chr1 HAVANA gene 131025 134836 3812.0 + 0 ENSG00000233750.3 processed_pseudogene CICP27 1 OTTHUMG00000001257.3 pseudo_consens +6128 chr1 HAVANA gene 135141 135895 755.0 - 0 ENSG00000268903.1 processed_pseudogene AL627309.6 2 OTTHUMG00000182518.2 +6129 chr1 HAVANA gene 137682 137965 284.0 - 0 ENSG00000269981.1 processed_pseudogene AL627309.7 2 OTTHUMG00000182738.2 +6130 chr1 HAVANA gene 139790 140339 323.0 - 0 ENSG00000239906.1 antisense AL627309.2 2 OTTHUMG00000002481.1 +6131 chr1 ENSEMBL gene 157784 157887 104.0 - 0 ENSG00000222623.1 snRNA RNU6-1100P 3 +6132 chr1 HAVANA gene 160446 161525 457.0 + 0 ENSG00000241599.1 lincRNA AL627309.4 2 OTTHUMG00000002525.1 +6133 chr1 HAVANA gene 141474 173862 6195.0 - 0 ENSG00000241860.6 processed_transcript AL627309.5 2 OTTHUMG00000002480.3 ncRNA_host +6134 chr1 HAVANA gene 182696 184174 570.0 + 0 ENSG00000279928.2 unprocessed_pseudogene FO538757.2 2 OTTHUMG00000191962.1 +6135 chr1 ENSEMBL gene 187891 187958 68.0 - 0 ENSG00000273874.1 miRNA MIR6859-2 3 +6136 chr1 HAVANA gene 185217 195411 1397.0 - 0 ENSG00000279457.4 unprocessed_pseudogene FO538757.1 2 OTTHUMG00000191963.1 +6137 chr1 HAVANA gene 347982 348366 385.0 - 0 ENSG00000236679.2 processed_pseudogene RPL23AP24 1 OTTHUMG00000002854.4 pseudo_consens +6138 chr1 HAVANA gene 257864 359681 8224.0 - 0 ENSG00000228463.10 transcribed_processed_pseudogene AP006222.1 1 OTTHUMG00000002552.3 pseudo_consens +6139 chr1 HAVANA gene 358857 366052 1095.0 + 0 ENSG00000236601.2 lincRNA AL732372.1 2 OTTHUMG00000002855.3 +6140 chr1 HAVANA gene 439870 440232 363.0 + 0 ENSG00000269732.1 processed_pseudogene WBP1LP7 1 OTTHUMG00000002859.2 pseudo_consens +6141 chr1 HAVANA gene 450703 451697 995.0 - 0 ENSG00000284733.1 protein_coding OR4F29 2 OTTHUMG00000002860.3 +6142 chr1 HAVANA gene 487101 489906 2477.0 + 0 ENSG00000233653.3 processed_pseudogene CICP7 1 OTTHUMG00000057429.3 pseudo_consens +6143 chr1 HAVANA gene 491225 493241 1239.0 - 0 ENSG00000250575.1 unprocessed_pseudogene AL732372.3 2 OTTHUMG00000002861.2 overlapping_locus +6144 chr1 ENSEMBL gene 516376 516479 104.0 - 0 ENSG00000278757.1 snRNA RF00026 3 +6145 chr1 HAVANA gene 365389 522928 6204.0 - 0 ENSG00000237094.12 transcribed_unprocessed_pseudogene AL732372.2 2 OTTHUMG00000002857.7 +6146 chr1 HAVANA gene 587629 594768 635.0 + 0 ENSG00000235146.2 lincRNA AC114498.1 2 OTTHUMG00000002329.1 +6147 chr1 HAVANA gene 629062 629433 372.0 + 0 ENSG00000225972.1 unprocessed_pseudogene MTND1P23 2 OTTHUMG00000002338.1 +6148 chr1 HAVANA gene 629640 630683 1044.0 + 0 ENSG00000225630.1 unprocessed_pseudogene MTND2P28 2 OTTHUMG00000002336.1 +6149 chr1 ENSEMBL gene 632325 632413 89.0 - 0 ENSG00000278791.1 miRNA MIR6723 3 +6150 chr1 HAVANA gene 631074 632616 1543.0 + 0 ENSG00000237973.1 unprocessed_pseudogene MTCO1P12 2 OTTHUMG00000002333.2 +6151 chr1 HAVANA gene 632757 633438 682.0 + 0 ENSG00000229344.1 unprocessed_pseudogene MTCO2P12 2 OTTHUMG00000002334.1 +6152 chr1 HAVANA gene 633535 633741 207.0 + 0 ENSG00000240409.1 unprocessed_pseudogene MTATP8P1 2 OTTHUMG00000002473.1 overlapping_locus +6153 chr1 HAVANA gene 633696 634376 681.0 + 0 ENSG00000248527.1 unprocessed_pseudogene MTATP6P1 2 OTTHUMG00000002335.2 overlapping_locus +6154 chr1 HAVANA gene 634376 634922 547.0 + 0 ENSG00000198744.5 unprocessed_pseudogene MTCO3P12 2 OTTHUMG00000002337.2 +6155 chr1 HAVANA gene 674842 675265 424.0 + 0 ENSG00000268663.1 processed_pseudogene WBP1LP6 1 OTTHUMG00000002340.3 pseudo_consens +6156 chr1 HAVANA gene 685679 686673 995.0 - 0 ENSG00000284662.1 protein_coding OR4F16 2 OTTHUMG00000002581.3 +6157 chr1 HAVANA gene 722092 724903 2455.0 + 0 ENSG00000229376.3 processed_pseudogene CICP3 1 OTTHUMG00000057431.3 pseudo_consens +6158 chr1 ENSEMBL gene 758233 758336 104.0 - 0 ENSG00000223181.1 snRNA RNU6-1199P 3 +6159 chr1 HAVANA gene 760911 761989 456.0 + 0 ENSG00000229905.1 antisense AL669831.2 2 OTTHUMG00000002408.1 +6160 chr1 HAVANA gene 725885 778626 6432.0 - 0 ENSG00000228327.3 transcribed_unprocessed_pseudogene AL669831.1 2 OTTHUMG00000002406.2 +6161 chr1 HAVANA gene 781937 782050 114.0 + 0 ENSG00000285268.1 transcribed_processed_pseudogene AL669831.7 2 OTTHUMG00000192553.1 overlapping_locus +6162 chr1 HAVANA gene 778770 810060 5517.0 + 0 ENSG00000237491.8 lincRNA AL669831.5 2 OTTHUMG00000002404.7 +6163 chr1 HAVANA gene 800879 817712 872.0 - 0 ENSG00000230092.7 transcribed_unprocessed_pseudogene AL669831.4 2 OTTHUMG00000002403.3 overlapping_locus +6164 chr1 HAVANA gene 817371 819837 1947.0 + 0 ENSG00000177757.2 lincRNA FAM87B 2 OTTHUMG00000002471.2 +6165 chr1 HAVANA gene 826206 827522 1317.0 - 0 ENSG00000225880.5 lincRNA LINC00115 2 OTTHUMG00000141258.2 +6166 chr1 HAVANA gene 586071 827796 5495.0 - 0 ENSG00000230021.10 transcribed_processed_pseudogene AL669831.3 2 OTTHUMG00000191652.4 +6167 chr1 HAVANA gene 825138 859446 9470.0 + 0 ENSG00000228794.8 processed_transcript LINC01128 2 OTTHUMG00000002468.7 +6168 chr1 HAVANA gene 873292 874349 1058.0 + 0 ENSG00000234711.1 unprocessed_pseudogene TUBB8P11 1 OTTHUMG00000002470.2 pseudo_consens +6169 chr1 HAVANA gene 868071 876903 1971.0 - 0 ENSG00000230368.2 lincRNA FAM41C 2 OTTHUMG00000002469.1 +6170 chr1 HAVANA gene 874529 877234 837.0 - 0 ENSG00000283040.1 transcribed_unprocessed_pseudogene AL669831.6 2 OTTHUMG00000191520.1 +6171 chr1 HAVANA gene 911435 914948 3043.0 + 0 ENSG00000230699.2 lincRNA AL645608.2 2 OTTHUMG00000040716.1 overlapping_locus +6172 chr1 HAVANA gene 914171 914971 443.0 + 0 ENSG00000241180.1 lincRNA AL645608.4 2 OTTHUMG00000040717.2 overlapping_locus +6173 chr1 HAVANA gene 904834 915976 351.0 + 0 ENSG00000272438.1 lincRNA AL645608.6 2 OTTHUMG00000185550.1 overlapping_locus +6174 chr1 HAVANA gene 916865 921016 4152.0 - 0 ENSG00000223764.2 lincRNA LINC02593 2 OTTHUMG00000040718.2 +6175 chr1 HAVANA gene 923928 944581 4166.0 + 0 ENSG00000187634.11 protein_coding SAMD11 2 OTTHUMG00000040719.10 +6176 chr1 HAVANA gene 944204 959309 5539.0 - 0 ENSG00000188976.10 protein_coding NOC2L 2 OTTHUMG00000040720.1 +6177 chr1 HAVANA gene 960587 965715 3395.0 + 0 ENSG00000187961.13 protein_coding KLHL17 2 OTTHUMG00000040721.7 +6178 chr1 HAVANA gene 966497 975865 2833.0 + 0 ENSG00000187583.10 protein_coding PLEKHN1 2 OTTHUMG00000040756.4 +6179 chr1 HAVANA gene 975204 982093 3424.0 - 0 ENSG00000187642.9 protein_coding PERM1 2 OTTHUMG00000040757.3 +6180 chr1 HAVANA gene 995966 998051 2086.0 - 0 ENSG00000272512.1 lincRNA AL645608.7 2 OTTHUMG00000185581.1 +6181 chr1 HAVANA gene 998962 1000172 1118.0 - 0 ENSG00000188290.10 protein_coding HES4 2 OTTHUMG00000040758.2 +6182 chr1 HAVANA gene 1008076 1008229 154.0 - 0 ENSG00000231702.2 processed_pseudogene AL645608.3 2 OTTHUMG00000040759.3 +6183 chr1 HAVANA gene 1011997 1013193 471.0 - 0 ENSG00000224969.1 antisense AL645608.1 1 OTTHUMG00000040779.1 +6184 chr1 HAVANA gene 1001138 1014540 941.0 + 0 ENSG00000187608.9 protein_coding ISG15 2 OTTHUMG00000040777.4 +6185 chr1 HAVANA gene 1055033 1056116 402.0 + 0 ENSG00000242590.1 sense_intronic AL645608.5 2 OTTHUMG00000040780.1 overlapping_locus +6186 chr1 HAVANA gene 1020123 1056118 10758.0 + 0 ENSG00000188157.14 protein_coding AGRN 2 OTTHUMG00000040778.5 overlapping_locus +6187 chr1 HAVANA gene 1062208 1063288 829.0 - 0 ENSG00000273443.1 lincRNA AL645608.8 2 OTTHUMG00000186253.1 +6188 chr1 HAVANA gene 1059734 1069355 2171.0 + 0 ENSG00000217801.9 transcribed_unprocessed_pseudogene AL390719.1 2 OTTHUMG00000000629.3 +6189 chr1 HAVANA gene 1070966 1074307 1902.0 - 0 ENSG00000237330.2 protein_coding RNF223 2 OTTHUMG00000185582.1 +6190 chr1 HAVANA gene 1097585 1104598 1095.0 + 0 ENSG00000285812.1 antisense AL390719.3 2 OTTHUMG00000193099.1 +6191 chr1 HAVANA gene 1081818 1116361 6322.0 - 0 ENSG00000131591.17 protein_coding C1orf159 2 OTTHUMG00000000745.9 +6192 chr1 HAVANA gene 1137017 1144056 1620.0 + 0 ENSG00000223823.1 lincRNA LINC01342 2 OTTHUMG00000000827.1 +6193 chr1 ENSEMBL gene 1167104 1167198 95.0 + 0 ENSG00000207730.3 miRNA MIR200B 3 +6194 chr1 ENSEMBL gene 1167863 1167952 90.0 + 0 ENSG00000207607.3 miRNA MIR200A 3 +6195 chr1 ENSEMBL gene 1169005 1169087 83.0 + 0 ENSG00000198976.1 miRNA MIR429 3 +6196 chr1 HAVANA gene 1169357 1170343 987.0 + 0 ENSG00000272141.1 lincRNA AL390719.2 2 OTTHUMG00000185583.1 +6197 chr1 HAVANA gene 1173056 1179555 3532.0 - 0 ENSG00000205231.1 antisense TTLL10-AS1 2 OTTHUMG00000000850.1 +6198 chr1 HAVANA gene 1173884 1197935 3943.0 + 0 ENSG00000162571.13 protein_coding TTLL10 2 OTTHUMG00000000851.4 +6199 chr1 HAVANA gene 1203508 1206691 1370.0 - 0 ENSG00000186891.13 protein_coding TNFRSF18 2 OTTHUMG00000001414.4 +6200 chr1 HAVANA gene 1211326 1214138 1721.0 - 0 ENSG00000186827.10 protein_coding TNFRSF4 2 OTTHUMG00000001415.3 +6201 chr1 HAVANA gene 1216908 1232031 4709.0 - 0 ENSG00000078808.16 protein_coding SDF4 2 OTTHUMG00000001812.6 +6202 chr1 HAVANA gene 1232226 1235041 2816.0 + 0 ENSG00000176022.5 protein_coding B3GALT6 2 OTTHUMG00000001813.2 retrogene +6203 chr1 HAVANA gene 1242446 1246722 1794.0 - 0 ENSG00000184163.3 protein_coding C1QTNF12 2 OTTHUMG00000001412.6 +6204 chr1 HAVANA gene 1249777 1251334 1558.0 - 0 ENSG00000260179.1 lincRNA AL162741.1 2 OTTHUMG00000175732.1 +6205 chr1 HAVANA gene 1253909 1273885 4712.0 - 0 ENSG00000160087.20 protein_coding UBE2J2 2 OTTHUMG00000001911.9 +6206 chr1 HAVANA gene 1275223 1280420 513.0 + 0 ENSG00000230415.1 lincRNA LINC01786 2 OTTHUMG00000002234.2 +6207 chr1 HAVANA gene 1280436 1292029 4025.0 + 0 ENSG00000162572.20 protein_coding SCNN1D 2 OTTHUMG00000002081.7 +6208 chr1 ENSEMBL gene 1296110 1296170 61.0 - 0 ENSG00000278073.1 miRNA MIR6726 3 +6209 chr1 HAVANA gene 1292376 1309609 8809.0 - 0 ENSG00000131584.18 protein_coding ACAP3 2 OTTHUMG00000002235.4 ncRNA_host +6210 chr1 HAVANA gene 1308567 1311677 2489.0 + 0 ENSG00000169972.11 protein_coding PUSL1 2 OTTHUMG00000003361.3 +6211 chr1 ENSEMBL gene 1312502 1312566 65.0 - 0 ENSG00000283712.1 miRNA MIR6727 3 +6212 chr1 HAVANA gene 1317581 1318689 386.0 - 0 ENSG00000240731.1 sense_intronic AL139287.1 2 OTTHUMG00000003331.1 overlapping_locus +6213 chr1 HAVANA gene 1311585 1324691 8220.0 - 0 ENSG00000127054.20 protein_coding INTS11 1 OTTHUMG00000003330.13 ncRNA_host,overlapping_locus +6214 chr1 HAVANA gene 1324756 1328897 2556.0 + 0 ENSG00000224051.6 protein_coding CPTP 2 OTTHUMG00000003171.3 +6215 chr1 HAVANA gene 1331314 1335306 3433.0 + 0 ENSG00000169962.4 protein_coding TAS1R3 2 OTTHUMG00000003071.1 +6216 chr1 ENSEMBL gene 1339650 1339708 59.0 - 0 ENSG00000284372.1 miRNA MIR6808 3 +6217 chr1 HAVANA gene 1335276 1349350 3814.0 - 0 ENSG00000107404.19 protein_coding DVL1 2 OTTHUMG00000003069.4 ncRNA_host +6218 chr1 HAVANA gene 1352689 1361777 3622.0 - 0 ENSG00000162576.16 protein_coding MXRA8 2 OTTHUMG00000002973.5 +6219 chr1 HAVANA gene 1373730 1375495 1669.0 - 0 ENSG00000175756.13 protein_coding AURKAIP1 2 OTTHUMG00000001413.3 +6220 chr1 HAVANA gene 1378666 1379032 367.0 + 0 ENSG00000223663.2 processed_pseudogene NDUFB4P8 1 OTTHUMG00000002972.2 pseudo_consens +6221 chr1 HAVANA gene 1385711 1399328 6850.0 - 0 ENSG00000221978.11 protein_coding CCNL2 2 OTTHUMG00000002917.6 +6222 chr1 HAVANA gene 1399522 1402046 2525.0 + 0 ENSG00000224870.6 processed_transcript AL391244.1 2 OTTHUMG00000002908.4 +6223 chr1 ENSEMBL gene 1405460 1405752 293.0 - 0 ENSG00000264293.2 misc_RNA RN7SL657P 3 +6224 chr1 HAVANA gene 1401908 1407313 2788.0 - 0 ENSG00000242485.5 protein_coding MRPL20 1 OTTHUMG00000002916.3 ncRNA_host +6225 chr1 HAVANA gene 1409096 1410618 1523.0 + 0 ENSG00000272455.1 lincRNA AL391244.3 2 OTTHUMG00000185586.1 +6226 chr1 HAVANA gene 1418420 1421769 2644.0 - 0 ENSG00000235098.8 protein_coding ANKRD65 1 OTTHUMG00000002911.4 +6227 chr1 HAVANA gene 1420245 1422691 543.0 + 0 ENSG00000225905.1 antisense AL391244.2 2 OTTHUMG00000002912.1 +6228 chr1 HAVANA gene 1426128 1427787 492.0 + 0 ENSG00000205116.3 protein_coding TMEM88B 2 OTTHUMG00000153395.3 +6229 chr1 HAVANA gene 1430539 1434573 851.0 - 0 ENSG00000225285.1 lincRNA LINC01770 1 OTTHUMG00000002915.2 +6230 chr1 HAVANA gene 1434861 1442882 5065.0 + 0 ENSG00000179403.11 protein_coding VWA1 1 OTTHUMG00000002975.5 +6231 chr1 HAVANA gene 1449689 1470158 3976.0 + 0 ENSG00000215915.9 protein_coding ATAD3C 2 OTTHUMG00000000531.7 +6232 chr1 HAVANA gene 1471769 1497848 7682.0 + 0 ENSG00000160072.19 protein_coding ATAD3B 2 OTTHUMG00000000577.5 +6233 chr1 HAVANA gene 1503250 1509452 660.0 + 0 ENSG00000284740.1 transcribed_unprocessed_pseudogene AL645728.2 2 OTTHUMG00000192278.1 +6234 chr1 HAVANA gene 1512151 1534687 3069.0 + 0 ENSG00000197785.13 protein_coding ATAD3A 2 OTTHUMG00000000575.6 +6235 chr1 HAVANA gene 1535174 1540453 1380.0 - 0 ENSG00000205090.8 protein_coding TMEM240 2 OTTHUMG00000042193.3 +6236 chr1 HAVANA gene 1541673 1574869 6925.0 - 0 ENSG00000160075.11 protein_coding SSU72 2 OTTHUMG00000000576.5 +6237 chr1 HAVANA gene 1574102 1577075 2349.0 + 0 ENSG00000215014.5 processed_transcript AL645728.1 2 OTTHUMG00000186983.2 +6238 chr1 HAVANA gene 1583510 1583909 400.0 - 0 ENSG00000274481.1 processed_pseudogene AL691432.3 2 OTTHUMG00000187518.1 +6239 chr1 HAVANA gene 1598012 1600096 2085.0 - 0 ENSG00000228594.3 protein_coding FNDC10 2 OTTHUMG00000154864.4 +6240 chr1 HAVANA gene 1613758 1615795 2038.0 - 0 ENSG00000272106.1 antisense AL691432.2 2 OTTHUMG00000185588.1 +6241 chr1 HAVANA gene 1615415 1630610 8767.0 + 0 ENSG00000197530.12 protein_coding MIB2 1 OTTHUMG00000074647.10 +6242 chr1 HAVANA gene 1632095 1635263 2273.0 + 0 ENSG00000189409.13 protein_coding MMP23B 2 OTTHUMG00000074713.6 +6243 chr1 HAVANA gene 1635227 1659012 3488.0 - 0 ENSG00000248333.8 protein_coding CDK11B 2 OTTHUMG00000078638.6 +6244 chr1 HAVANA gene 1659325 1662602 400.0 + 0 ENSG00000272004.1 antisense FO704657.1 2 OTTHUMG00000185638.1 +6245 chr1 HAVANA gene 1671990 1674397 1819.0 + 0 ENSG00000269737.2 transcribed_processed_pseudogene AL691432.1 1 OTTHUMG00000182605.1 pseudo_consens,overlapping_locus +6246 chr1 HAVANA gene 1659529 1692728 8395.0 - 0 ENSG00000189339.11 protein_coding SLC35E2B 2 OTTHUMG00000078639.3 +6247 chr1 HAVANA gene 1699942 1701782 1017.0 + 0 ENSG00000215914.4 unprocessed_pseudogene MMP23A 2 OTTHUMG00000000585.6 +6248 chr1 HAVANA gene 1702730 1724324 4701.0 - 0 ENSG00000008128.22 protein_coding CDK11A 2 OTTHUMG00000000703.15 overlapping_locus +6249 chr1 HAVANA gene 1724512 1737251 2759.0 + 0 ENSG00000227775.3 transcribed_processed_pseudogene AL031282.1 1 OTTHUMG00000000825.3 pseudo_consens +6250 chr1 HAVANA gene 1702736 1737688 5079.0 - 0 ENSG00000268575.1 processed_transcript AL031282.2 2 OTTHUMG00000183552.1 overlapping_locus +6251 chr1 HAVANA gene 1724838 1745999 7713.0 - 0 ENSG00000215790.7 protein_coding SLC35E2A 2 OTTHUMG00000000823.6 overlapping_locus +6252 chr1 HAVANA gene 1751232 1780457 5570.0 - 0 ENSG00000008130.15 protein_coding NADK 2 OTTHUMG00000000942.6 +6253 chr1 HAVANA gene 1785285 1891117 6417.0 - 0 ENSG00000078369.17 protein_coding GNB1 1 OTTHUMG00000000940.8 +6254 chr1 HAVANA gene 1891471 1892658 906.0 + 0 ENSG00000231050.1 antisense AL109917.1 2 OTTHUMG00000000941.1 +6255 chr1 HAVANA gene 1914827 1917296 2321.0 + 0 ENSG00000169885.9 protein_coding CALML6 1 OTTHUMG00000000943.2 +6256 chr1 HAVANA gene 1917590 1919273 1594.0 - 0 ENSG00000178821.12 protein_coding TMEM52 2 OTTHUMG00000000944.7 +6257 chr1 HAVANA gene 1921951 2003837 10422.0 - 0 ENSG00000142609.18 protein_coding CFAP74 1 OTTHUMG00000000945.17 +6258 chr1 HAVANA gene 2013213 2015530 1954.0 - 0 ENSG00000233542.1 antisense AL391845.2 2 OTTHUMG00000041065.1 +6259 chr1 HAVANA gene 2019298 2030758 5556.0 + 0 ENSG00000187730.8 protein_coding GABRD 2 OTTHUMG00000041064.5 +6260 chr1 HAVANA gene 2049203 2050070 538.0 - 0 ENSG00000226969.1 antisense AL391845.1 2 OTTHUMG00000041087.1 +6261 chr1 HAVANA gene 2141084 2145279 4196.0 - 0 ENSG00000271806.1 antisense AL590822.2 2 OTTHUMG00000185365.1 +6262 chr1 HAVANA gene 2181794 2184389 1734.0 - 0 ENSG00000182873.5 antisense PRKCZ-AS1 1 OTTHUMG00000001239.2 +6263 chr1 HAVANA gene 2050470 2185395 7636.0 + 0 ENSG00000067606.16 protein_coding PRKCZ 1 OTTHUMG00000001238.13 +6264 chr1 HAVANA gene 2184461 2212720 10916.0 - 0 ENSG00000162585.16 protein_coding FAAP20 2 OTTHUMG00000001404.7 +6265 chr1 HAVANA gene 2212523 2220738 326.0 + 0 ENSG00000234396.3 lincRNA AL590822.1 2 OTTHUMG00000001405.2 +6266 chr1 HAVANA gene 2228695 2310119 6080.0 + 0 ENSG00000157933.9 protein_coding SKI 2 OTTHUMG00000001407.3 +6267 chr1 HAVANA gene 2326201 2326693 493.0 - 0 ENSG00000272161.1 sense_intronic AL589739.1 2 OTTHUMG00000185693.1 overlapping_locus +6268 chr1 HAVANA gene 2350414 2352820 2407.0 - 0 ENSG00000269896.2 transcribed_processed_pseudogene AL513477.1 1 OTTHUMG00000057495.3 pseudo_consens,overlapping_locus +6269 chr1 HAVANA gene 2363061 2363628 568.0 - 0 ENSG00000272420.1 sense_intronic AL513477.2 2 OTTHUMG00000185694.1 overlapping_locus +6270 chr1 HAVANA gene 2321253 2391707 11337.0 - 0 ENSG00000116151.13 protein_coding MORN1 1 OTTHUMG00000001402.6 overlapping_locus +6271 chr1 HAVANA gene 2391775 2405444 5691.0 + 0 ENSG00000157916.19 protein_coding RER1 2 OTTHUMG00000001403.5 +6272 chr1 HAVANA gene 2403964 2413797 3789.0 - 0 ENSG00000157911.10 protein_coding PEX10 1 OTTHUMG00000001637.8 +6273 chr1 HAVANA gene 2492300 2493258 455.0 - 0 ENSG00000224387.1 antisense AL139246.1 1 OTTHUMG00000000720.1 +6274 chr1 HAVANA gene 2493437 2494479 514.0 - 0 ENSG00000229393.1 antisense AL139246.4 1 OTTHUMG00000000721.1 +6275 chr1 HAVANA gene 2425980 2505530 10781.0 + 0 ENSG00000149527.17 protein_coding PLCH2 2 OTTHUMG00000000719.4 +6276 chr1 HAVANA gene 2508533 2526628 5107.0 - 0 ENSG00000157881.13 protein_coding PANK4 2 OTTHUMG00000000791.4 +6277 chr1 HAVANA gene 2528745 2530245 1306.0 - 0 ENSG00000197921.5 protein_coding HES5 2 OTTHUMG00000000793.1 +6278 chr1 HAVANA gene 2530064 2547460 1531.0 + 0 ENSG00000272449.2 lincRNA AL139246.5 2 OTTHUMG00000185639.2 +6279 chr1 HAVANA gene 2549920 2557031 6137.0 - 0 ENSG00000238164.6 antisense TNFRSF14-AS1 2 OTTHUMG00000000818.3 +6280 chr1 HAVANA gene 2555639 2565382 6219.0 + 0 ENSG00000157873.17 protein_coding TNFRSF14 2 OTTHUMG00000000792.18 +6281 chr1 HAVANA gene 2566410 2569888 1297.0 + 0 ENSG00000225931.3 TEC AL139246.2 2 OTTHUMG00000158429.2 +6282 chr1 HAVANA gene 2581560 2584533 626.0 + 0 ENSG00000228037.1 lincRNA AL139246.3 1 OTTHUMG00000000819.1 +6283 chr1 HAVANA gene 2586491 2591469 3371.0 + 0 ENSG00000157870.15 protein_coding PRXL2B 2 OTTHUMG00000000847.6 +6284 chr1 HAVANA gene 2590639 2632990 3844.0 - 0 ENSG00000142606.15 protein_coding MMEL1 2 OTTHUMG00000000846.4 +6285 chr1 HAVANA gene 2632568 2636620 373.0 + 0 ENSG00000237058.1 antisense AL831784.1 1 OTTHUMG00000039631.1 +6286 chr1 HAVANA gene 2773603 2776473 1565.0 + 0 ENSG00000283259.1 antisense AC242022.1 2 OTTHUMG00000191647.1 +6287 chr1 HAVANA gene 2768091 2784733 593.0 + 0 ENSG00000285945.1 lincRNA AC242022.2 2 OTTHUMG00000192792.2 overlapping_locus +6288 chr1 HAVANA gene 2635976 2801717 8814.0 - 0 ENSG00000215912.12 protein_coding TTC34 2 OTTHUMG00000000539.10 +6289 chr1 HAVANA gene 2811850 2812692 607.0 - 0 ENSG00000233234.1 lincRNA AL592464.2 1 OTTHUMG00000000564.1 +6290 chr1 HAVANA gene 2814432 2814998 429.0 - 0 ENSG00000231630.1 lincRNA AL592464.1 2 OTTHUMG00000000565.1 +6291 chr1 HAVANA gene 2960658 2968707 1654.0 - 0 ENSG00000284745.1 lincRNA AL589702.1 2 OTTHUMG00000192279.1 +6292 chr1 HAVANA gene 3021483 3022903 1421.0 + 0 ENSG00000169717.6 protein_coding ACTRT2 2 OTTHUMG00000000562.1 retrogene +6293 chr1 HAVANA gene 3059615 3068437 5600.0 - 0 ENSG00000177133.10 antisense LINC00982 2 OTTHUMG00000000563.3 +6294 chr1 ENSEMBL gene 3127975 3128035 61.0 + 0 ENSG00000283572.1 miRNA MIR4251 3 +6295 chr1 HAVANA gene 3132927 3133709 469.0 - 0 ENSG00000226286.1 antisense AL008733.1 2 OTTHUMG00000000624.1 +6296 chr1 HAVANA gene 3205988 3208664 2677.0 + 0 ENSG00000279839.1 TEC AL512383.1 2 OTTHUMG00000185775.1 overlapping_locus +6297 chr1 HAVANA gene 3306636 3310096 3461.0 - 0 ENSG00000272235.1 lincRNA AL590438.1 2 OTTHUMG00000185641.1 +6298 chr1 HAVANA gene 3069168 3438621 9767.0 + 0 ENSG00000142611.16 protein_coding PRDM16 1 OTTHUMG00000000581.9 ncRNA_host,overlapping_locus +6299 chr1 HAVANA gene 3454426 3481113 5563.0 + 0 ENSG00000130762.14 protein_coding ARHGEF16 2 OTTHUMG00000000625.4 +6300 chr1 HAVANA gene 3487246 3487627 382.0 + 0 ENSG00000272088.1 lincRNA AL512413.1 2 OTTHUMG00000185642.1 +6301 chr1 ENSEMBL gene 3560695 3560790 96.0 - 0 ENSG00000207776.1 miRNA MIR551A 3 +6302 chr1 HAVANA gene 3489920 3611495 7039.0 - 0 ENSG00000162591.15 protein_coding MEGF6 2 OTTHUMG00000000611.7 ncRNA_host +6303 chr1 HAVANA gene 3623190 3624743 622.0 - 0 ENSG00000238260.1 antisense AL513320.1 2 OTTHUMG00000000613.1 +6304 chr1 HAVANA gene 3625002 3630127 2414.0 + 0 ENSG00000158109.14 protein_coding TPRG1L 2 OTTHUMG00000000609.1 +6305 chr1 HAVANA gene 3630767 3652761 7604.0 - 0 ENSG00000116213.15 protein_coding WRAP73 1 OTTHUMG00000000612.5 +6306 chr1 HAVANA gene 3658938 3668772 754.0 - 0 ENSG00000227589.1 antisense AL136528.1 1 OTTHUMG00000041605.1 +6307 chr1 HAVANA gene 3712200 3714298 351.0 - 0 ENSG00000235131.1 antisense AL136528.2 2 OTTHUMG00000003412.1 +6308 chr1 HAVANA gene 3652520 3736201 6763.0 + 0 ENSG00000078900.14 protein_coding TP73 1 OTTHUMG00000000610.6 +6309 chr1 ENSEMBL gene 3736943 3737103 161.0 + 0 ENSG00000276189.1 misc_RNA RF02197 3 +6310 chr1 HAVANA gene 3735511 3747373 9701.0 - 0 ENSG00000227372.12 transcribed_unitary_pseudogene TP73-AS1 2 OTTHUMG00000003414.6 +6311 chr1 HAVANA gene 3746460 3771645 4285.0 + 0 ENSG00000162592.9 protein_coding CCDC27 2 OTTHUMG00000003504.4 +6312 chr1 HAVANA gene 3772761 3775982 981.0 + 0 ENSG00000235169.8 protein_coding SMIM1 1 OTTHUMG00000003505.6 +6313 chr1 ENSEMBL gene 3782815 3783111 297.0 + 0 ENSG00000266075.2 misc_RNA RN7SL574P 3 +6314 chr1 HAVANA gene 3785008 3785538 531.0 + 0 ENSG00000272153.1 antisense AL365330.1 2 OTTHUMG00000185643.1 +6315 chr1 HAVANA gene 3778558 3796504 4516.0 - 0 ENSG00000130764.9 protein_coding LRRC47 2 OTTHUMG00000003506.3 +6316 chr1 HAVANA gene 3812081 3857214 7876.0 - 0 ENSG00000116198.12 protein_coding CEP104 2 OTTHUMG00000003507.5 +6317 chr1 HAVANA gene 3857267 3885429 3870.0 + 0 ENSG00000169598.15 protein_coding DFFB 2 OTTHUMG00000003525.6 +6318 chr1 HAVANA gene 3889125 3900293 4388.0 - 0 ENSG00000198912.10 protein_coding C1orf174 2 OTTHUMG00000003739.1 +6319 chr1 HAVANA gene 3900372 3917225 4064.0 + 0 ENSG00000236423.5 lincRNA LINC01134 2 OTTHUMG00000041129.2 +6320 chr1 HAVANA gene 3944547 3948980 1852.0 - 0 ENSG00000226374.2 lincRNA LINC01345 1 OTTHUMG00000000731.2 +6321 chr1 HAVANA gene 3940565 3955262 3894.0 + 0 ENSG00000233304.6 lincRNA LINC01346 2 OTTHUMG00000000499.3 +6322 chr1 HAVANA gene 3976133 4012699 1830.0 + 0 ENSG00000284668.1 lincRNA AL805961.1 2 OTTHUMG00000192281.1 +6323 chr1 HAVANA gene 4012921 4019508 4817.0 - 0 ENSG00000284703.1 lincRNA AL805961.2 2 OTTHUMG00000192282.1 +6324 chr1 HAVANA gene 4175528 4175899 372.0 - 0 ENSG00000229280.1 processed_pseudogene EEF1DP6 1 OTTHUMG00000000732.1 pseudo_consens +6325 chr1 HAVANA gene 4412027 4424689 2104.0 + 0 ENSG00000235054.3 lincRNA LINC01777 2 OTTHUMG00000000733.3 +6326 chr1 HAVANA gene 4479131 4484375 3402.0 - 0 ENSG00000284694.1 lincRNA AL355602.1 2 OTTHUMG00000192283.1 +6327 chr1 HAVANA gene 4551735 4552145 356.0 - 0 ENSG00000227169.2 lincRNA Z98747.1 2 OTTHUMG00000000646.2 +6328 chr1 HAVANA gene 4571481 4594009 1994.0 + 0 ENSG00000232596.2 lincRNA LINC01646 2 OTTHUMG00000000647.2 +6329 chr1 HAVANA gene 4654732 4792534 12405.0 + 0 ENSG00000196581.10 protein_coding AJAP1 2 OTTHUMG00000000645.6 +6330 chr1 HAVANA gene 4963954 4973298 464.0 - 0 ENSG00000284739.1 lincRNA BX005132.2 2 OTTHUMG00000192284.1 +6331 chr1 HAVANA gene 4973381 4981568 1580.0 + 0 ENSG00000284674.1 lincRNA BX005132.1 2 OTTHUMG00000192285.1 +6332 chr1 HAVANA gene 5086459 5090899 449.0 - 0 ENSG00000231510.1 lincRNA AL691497.1 1 OTTHUMG00000041729.1 +6333 chr1 HAVANA gene 5301928 5307394 1225.0 - 0 ENSG00000284616.1 lincRNA AL139823.1 2 OTTHUMG00000192286.1 +6334 chr1 HAVANA gene 5480787 5482028 609.0 - 0 ENSG00000284666.1 lincRNA Z98259.2 2 OTTHUMG00000192288.1 +6335 chr1 HAVANA gene 5478736 5493057 2316.0 - 0 ENSG00000284692.2 lincRNA Z98259.3 2 OTTHUMG00000192287.2 +6336 chr1 HAVANA gene 5492978 5494674 1697.0 + 0 ENSG00000260972.1 lincRNA Z98259.1 2 OTTHUMG00000175733.1 +6337 chr1 HAVANA gene 5554747 5554881 135.0 + 0 ENSG00000283356.1 unprocessed_pseudogene Z97988.1 2 OTTHUMG00000191793.1 +6338 chr1 ENSEMBL gene 5564071 5564143 73.0 + 0 ENSG00000264341.1 miRNA MIR4417 3 +6339 chr1 HAVANA gene 5561709 5668295 1095.0 - 0 ENSG00000236948.2 lincRNA AL365255.1 2 OTTHUMG00000041453.2 +6340 chr1 ENSEMBL gene 5862672 5862741 70.0 - 0 ENSG00000264101.1 miRNA MIR4689 3 +6341 chr1 HAVANA gene 5862811 5992473 13167.0 - 0 ENSG00000131697.17 protein_coding NPHP4 2 OTTHUMG00000000701.6 +6342 chr1 HAVANA gene 5991466 6101193 9534.0 + 0 ENSG00000069424.14 protein_coding KCNAB2 2 OTTHUMG00000000795.9 +6343 chr1 HAVANA gene 6101793 6180123 9890.0 - 0 ENSG00000116254.17 protein_coding CHD5 2 OTTHUMG00000000952.6 +6344 chr1 HAVANA gene 6159430 6197757 663.0 - 0 ENSG00000285629.1 protein_coding AL031847.2 2 OTTHUMG00000000953.6 overlapping_locus +6345 chr1 HAVANA gene 6204840 6205780 378.0 - 0 ENSG00000226944.1 antisense AL031847.1 2 OTTHUMG00000041452.1 overlapping_locus +6346 chr1 HAVANA gene 6185020 6209389 4682.0 - 0 ENSG00000116251.10 protein_coding RPL22 1 OTTHUMG00000193375.1 overlapping_locus +6347 chr1 HAVANA gene 6205475 6221299 6585.0 + 0 ENSG00000158286.12 protein_coding RNF207 2 OTTHUMG00000001089.4 +6348 chr1 HAVANA gene 6221193 6235972 4910.0 - 0 ENSG00000116237.15 protein_coding ICMT 2 OTTHUMG00000001254.2 +6349 chr1 HAVANA gene 6234692 6239444 2358.0 + 0 ENSG00000225077.3 lincRNA LINC00337 2 OTTHUMG00000001255.5 +6350 chr1 HAVANA gene 6244192 6245578 697.0 + 0 ENSG00000173673.7 protein_coding HES3 2 OTTHUMG00000001271.3 +6351 chr1 HAVANA gene 6247346 6260975 4082.0 - 0 ENSG00000158292.6 protein_coding GPR153 2 OTTHUMG00000001272.2 +6352 chr1 HAVANA gene 6393555 6394391 837.0 + 0 ENSG00000271746.1 antisense AL031848.2 2 OTTHUMG00000185645.1 +6353 chr1 HAVANA gene 6264269 6394391 4124.0 - 0 ENSG00000097021.19 protein_coding ACOT7 2 OTTHUMG00000001295.8 +6354 chr1 HAVANA gene 6412418 6424670 5407.0 - 0 ENSG00000069812.11 protein_coding HES2 2 OTTHUMG00000000752.2 +6355 chr1 ENSEMBL gene 6429834 6429896 63.0 - 0 ENSG00000265392.1 miRNA MIR4252 3 +6356 chr1 HAVANA gene 6443034 6447006 351.0 - 0 ENSG00000231868.1 antisense AL031848.1 2 OTTHUMG00000000769.1 +6357 chr1 HAVANA gene 6424776 6461367 6952.0 + 0 ENSG00000187017.16 protein_coding ESPN 2 OTTHUMG00000000753.11 +6358 chr1 HAVANA gene 6460786 6466195 4283.0 - 0 ENSG00000215788.10 protein_coding TNFRSF25 2 OTTHUMG00000000831.9 overlapping_locus +6359 chr1 HAVANA gene 6466092 6520061 7053.0 - 0 ENSG00000171680.21 protein_coding PLEKHG5 2 OTTHUMG00000000905.4 overlapping_locus +6360 chr1 ENSEMBL gene 6540854 6540964 111.0 + 0 ENSG00000253022.1 snRNA RNU6-731P 3 +6361 chr1 HAVANA gene 6547905 6548619 401.0 + 0 ENSG00000229519.2 processed_pseudogene AL591866.1 1 OTTHUMG00000001442.3 pseudo_consens +6362 chr1 HAVANA gene 6521347 6554535 7293.0 - 0 ENSG00000162408.10 protein_coding NOL9 2 OTTHUMG00000000904.1 +6363 chr1 HAVANA gene 6555181 6579757 2892.0 + 0 ENSG00000173662.20 protein_coding TAS1R1 1 OTTHUMG00000001441.3 +6364 chr1 HAVANA gene 6580001 6589280 4503.0 + 0 ENSG00000204859.12 protein_coding ZBTB48 2 OTTHUMG00000001438.4 +6365 chr1 HAVANA gene 6590724 6614607 6901.0 - 0 ENSG00000162413.16 protein_coding KLHL21 1 OTTHUMG00000001437.3 +6366 chr1 HAVANA gene 6613685 6624033 3681.0 + 0 ENSG00000116273.5 protein_coding PHF13 2 OTTHUMG00000001439.1 +6367 chr1 HAVANA gene 6624866 6635586 4072.0 + 0 ENSG00000041988.15 protein_coding THAP3 2 OTTHUMG00000001440.3 +6368 chr1 HAVANA gene 6634168 6701924 5083.0 - 0 ENSG00000007923.15 protein_coding DNAJC11 2 OTTHUMG00000001443.5 +6369 chr1 HAVANA gene 6724637 6730012 2188.0 + 0 ENSG00000228750.6 lincRNA LINC01672 2 OTTHUMG00000001785.2 +6370 chr1 HAVANA gene 6767954 6770038 987.0 + 0 ENSG00000284744.1 lincRNA AL591163.1 2 OTTHUMG00000192289.1 +6371 chr1 HAVANA gene 6783892 6784843 415.0 - 0 ENSG00000237436.1 antisense CAMTA1-DT 2 OTTHUMG00000001213.1 +6372 chr1 HAVANA gene 6834333 6834618 286.0 - 0 ENSG00000227950.1 processed_pseudogene AL590128.1 1 OTTHUMG00000001214.1 pseudo_consens +6373 chr1 HAVANA gene 7008376 7014279 349.0 - 0 ENSG00000237365.1 antisense AL512330.1 2 OTTHUMG00000001215.2 +6374 chr1 ENSEMBL gene 7219360 7219524 165.0 + 0 ENSG00000207056.1 snRNA RNU1-8P 3 +6375 chr1 HAVANA gene 7368942 7370270 365.0 + 0 ENSG00000237402.1 sense_intronic CAMTA1-IT1 1 OTTHUMG00000001217.1 overlapping_locus +6376 chr1 HAVANA gene 7382487 7389754 744.0 - 0 ENSG00000237728.2 antisense Z97987.1 1 OTTHUMG00000001219.2 +6377 chr1 HAVANA gene 7441096 7441554 361.0 - 0 ENSG00000225126.1 antisense AL365194.1 2 OTTHUMG00000001220.1 +6378 chr1 HAVANA gene 7693124 7694844 1721.0 - 0 ENSG00000270171.1 lincRNA AL359881.3 2 OTTHUMG00000183917.1 +6379 chr1 HAVANA gene 7698303 7698872 570.0 - 0 ENSG00000270035.1 lincRNA AL359881.2 2 OTTHUMG00000183918.1 +6380 chr1 HAVANA gene 7700704 7700970 267.0 - 0 ENSG00000269978.1 lincRNA AL359881.1 2 OTTHUMG00000183919.1 +6381 chr1 HAVANA gene 6785324 7769706 10033.0 + 0 ENSG00000171735.18 protein_coding CAMTA1 1 OTTHUMG00000001212.6 ncRNA_host,overlapping_locus +6382 chr1 HAVANA gene 7776383 7776775 393.0 + 0 ENSG00000269925.1 sense_intronic Z98884.2 2 OTTHUMG00000183953.1 overlapping_locus +6383 chr1 HAVANA gene 7771269 7781432 2760.0 + 0 ENSG00000049245.12 protein_coding VAMP3 1 OTTHUMG00000001225.3 overlapping_locus +6384 chr1 HAVANA gene 7810242 7827342 830.0 - 0 ENSG00000236266.1 antisense Z98884.1 1 OTTHUMG00000001211.1 +6385 chr1 HAVANA gene 7784320 7845177 8099.0 + 0 ENSG00000049246.14 protein_coding PER3 1 OTTHUMG00000001216.3 +6386 chr1 HAVANA gene 7843083 7853512 1791.0 - 0 ENSG00000049247.13 protein_coding UTS2 2 OTTHUMG00000001218.3 +6387 chr1 HAVANA gene 7942372 7942726 355.0 + 0 ENSG00000270330.1 processed_pseudogene AL009183.1 1 OTTHUMG00000184257.1 pseudo_consens +6388 chr1 HAVANA gene 7915894 7943165 6331.0 - 0 ENSG00000049249.8 protein_coding TNFRSF9 1 OTTHUMG00000001223.3 +6389 chr1 ENSEMBL gene 7982881 7982983 103.0 - 0 ENSG00000200344.1 misc_RNA RF00019 3 +6390 chr1 HAVANA gene 7954291 7985505 2397.0 + 0 ENSG00000116288.12 protein_coding PARK7 1 OTTHUMG00000001210.3 +6391 chr1 HAVANA gene 7998187 7999934 1043.0 - 0 ENSG00000284716.1 lincRNA AL034417.3 2 OTTHUMG00000192290.1 +6392 chr1 HAVANA gene 7991134 8005312 4116.0 + 0 ENSG00000284747.1 antisense AL034417.4 2 OTTHUMG00000192291.2 +6393 chr1 HAVANA gene 8004404 8026308 4186.0 - 0 ENSG00000116285.12 protein_coding ERRFI1 1 OTTHUMG00000001221.3 +6394 chr1 HAVANA gene 8057245 8058463 800.0 - 0 ENSG00000232848.1 processed_pseudogene AL034417.1 1 OTTHUMG00000001224.1 pseudo_consens +6395 chr1 HAVANA gene 8026738 8122702 2044.0 + 0 ENSG00000238290.1 lincRNA AL034417.2 2 OTTHUMG00000001766.1 +6396 chr1 HAVANA gene 8189824 8192770 1075.0 + 0 ENSG00000229305.1 processed_pseudogene AL358876.1 1 OTTHUMG00000001767.1 pseudo_consens +6397 chr1 ENSEMBL gene 8206434 8206597 164.0 - 0 ENSG00000200975.1 snRNA RNU1-7P 3 +6398 chr1 HAVANA gene 8202429 8215210 950.0 + 0 ENSG00000227634.2 lincRNA LINC01714 1 OTTHUMG00000001769.2 +6399 chr1 HAVANA gene 8218190 8220529 477.0 - 0 ENSG00000233645.1 lincRNA AL358876.2 2 OTTHUMG00000001770.1 +6400 chr1 ENSEMBL gene 8292157 8292263 107.0 - 0 ENSG00000251977.1 snRNA RNU6-991P 3 +6401 chr1 ENSEMBL gene 8328067 8328179 113.0 + 0 ENSG00000252254.1 misc_RNA RF00019 3 +6402 chr1 HAVANA gene 8317826 8344167 2888.0 + 0 ENSG00000162426.14 protein_coding SLC45A1 2 OTTHUMG00000000503.6 ncRNA_host +6403 chr1 HAVANA gene 8424645 8434838 702.0 + 0 ENSG00000232912.5 antisense AL096855.1 1 OTTHUMG00000001772.1 +6404 chr1 ENSEMBL gene 8511795 8511919 125.0 - 0 ENSG00000221083.1 snoRNA RF00599 3 +6405 chr1 HAVANA gene 8512653 8513021 369.0 + 0 ENSG00000270282.1 processed_pseudogene AL096855.2 1 OTTHUMG00000184266.1 pseudo_consens +6406 chr1 HAVANA gene 8750430 8751087 658.0 + 0 ENSG00000234619.1 processed_pseudogene RPL7P11 1 OTTHUMG00000001774.1 pseudo_consens +6407 chr1 HAVANA gene 8786211 8786913 703.0 - 0 ENSG00000224315.2 processed_pseudogene RPL7P7 1 OTTHUMG00000001775.2 pseudo_consens,overlapping_locus +6408 chr1 ENSEMBL gene 8796571 8796673 103.0 - 0 ENSG00000222511.2 misc_RNA RF00019 3 +6409 chr1 HAVANA gene 8798475 8799506 415.0 + 0 ENSG00000226545.1 unprocessed_pseudogene AL357552.1 1 OTTHUMG00000001776.2 pseudo_consens +6410 chr1 HAVANA gene 8805860 8807051 353.0 - 0 ENSG00000228423.2 lincRNA AL357552.2 2 OTTHUMG00000001777.2 overlapping_locus +6411 chr1 HAVANA gene 8352397 8817643 11503.0 - 0 ENSG00000142599.17 protein_coding RERE 1 OTTHUMG00000001765.7 ncRNA_host,overlapping_locus +6412 chr1 HAVANA gene 8831007 8831375 369.0 + 0 ENSG00000229716.2 processed_pseudogene RPL23AP19 1 OTTHUMG00000001780.3 pseudo_consens +6413 chr1 ENSEMBL gene 8866502 8866590 89.0 - 0 ENSG00000274258.1 miRNA MIR6728 3 +6414 chr1 HAVANA gene 8861000 8879250 5276.0 - 0 ENSG00000074800.15 protein_coding ENO1 2 OTTHUMG00000001773.11 ncRNA_host,overlapping_locus +6415 chr1 HAVANA gene 8878835 8879894 456.0 + 0 ENSG00000230679.1 antisense ENO1-AS1 1 OTTHUMG00000001779.1 +6416 chr1 ENSEMBL gene 8883427 8883533 107.0 - 0 ENSG00000201725.1 snRNA RNU6-304P 3 +6417 chr1 HAVANA gene 8893409 8894151 743.0 + 0 ENSG00000238249.2 processed_pseudogene HMGN2P17 2 OTTHUMG00000001781.1 +6418 chr1 HAVANA gene 8907393 8907744 352.0 - 0 ENSG00000232208.2 processed_pseudogene AL139415.1 2 OTTHUMG00000001759.2 +6419 chr1 HAVANA gene 8909742 8909904 163.0 + 0 ENSG00000232663.2 processed_pseudogene AL139415.2 2 OTTHUMG00000001761.2 +6420 chr1 HAVANA gene 8945867 8975092 2662.0 + 0 ENSG00000131686.14 protein_coding CA6 1 OTTHUMG00000001763.7 +6421 chr1 ENSEMBL gene 8979576 8979874 299.0 - 0 ENSG00000265141.2 misc_RNA RN7SL451P 3 +6422 chr1 HAVANA gene 9003300 9026345 1539.0 - 0 ENSG00000197241.3 protein_coding SLC2A7 2 OTTHUMG00000057499.4 +6423 chr1 ENSEMBL gene 9082696 9082879 184.0 + 0 ENSG00000252404.1 scaRNA RF00424 3 +6424 chr1 HAVANA gene 9035107 9088478 6693.0 - 0 ENSG00000142583.17 protein_coding SLC2A5 2 OTTHUMG00000001771.3 +6425 chr1 HAVANA gene 9100305 9129170 5372.0 - 0 ENSG00000180758.11 protein_coding GPR157 2 OTTHUMG00000001758.5 +6426 chr1 ENSEMBL gene 9151668 9151777 110.0 - 0 ENSG00000284357.1 miRNA MIR34A 3 +6427 chr1 HAVANA gene 9182004 9196284 1662.0 + 0 ENSG00000234546.3 lincRNA LNCTAM34A 2 OTTHUMG00000001764.3 +6428 chr1 HAVANA gene 9148011 9198906 8702.0 - 0 ENSG00000228526.7 lincRNA MIR34AHG 2 OTTHUMG00000001762.6 ncRNA_host +6429 chr1 HAVANA gene 9234775 9271337 9321.0 + 0 ENSG00000049239.12 protein_coding H6PD 1 OTTHUMG00000001768.2 +6430 chr1 HAVANA gene 9292880 9369532 3403.0 + 0 ENSG00000171621.13 protein_coding SPSB1 2 OTTHUMG00000001279.4 +6431 chr1 HAVANA gene 9421098 9422862 1765.0 - 0 ENSG00000284652.1 lincRNA BX323043.1 2 OTTHUMG00000192292.1 +6432 chr1 ENSEMBL gene 9437669 9437778 110.0 - 0 ENSG00000252956.1 rRNA_pseudogene RNA5SP40 3 +6433 chr1 HAVANA gene 9425094 9440564 2623.0 - 0 ENSG00000284693.1 lincRNA AL928921.2 2 OTTHUMG00000192293.1 +6434 chr1 HAVANA gene 9501092 9503471 708.0 - 0 ENSG00000235263.1 lincRNA AL928921.1 2 OTTHUMG00000001278.1 +6435 chr1 HAVANA gene 9576427 9576985 559.0 + 0 ENSG00000231181.1 processed_pseudogene AL954705.1 1 OTTHUMG00000001323.1 pseudo_consens,overlapping_locus +6436 chr1 HAVANA gene 9539482 9585179 3854.0 + 0 ENSG00000171612.6 protein_coding SLC25A33 2 OTTHUMG00000001322.2 overlapping_locus +6437 chr1 HAVANA gene 9588922 9614873 6966.0 + 0 ENSG00000188807.12 protein_coding TMEM201 2 OTTHUMG00000057457.2 +6438 chr1 HAVANA gene 9652610 9654586 1823.0 - 0 ENSG00000179840.5 antisense PIK3CD-AS1 2 OTTHUMG00000001452.1 +6439 chr1 HAVANA gene 9660828 9662626 421.0 - 0 ENSG00000233268.3 processed_pseudogene AL691449.1 1 OTTHUMG00000001453.3 pseudo_consens +6440 chr1 HAVANA gene 9672426 9687555 939.0 - 0 ENSG00000231789.2 antisense PIK3CD-AS2 2 OTTHUMG00000001449.2 +6441 chr1 HAVANA gene 9651732 9729114 6332.0 + 0 ENSG00000171608.15 protein_coding PIK3CD 2 OTTHUMG00000001450.2 +6442 chr1 HAVANA gene 9780822 9781240 246.0 + 0 ENSG00000271264.1 processed_pseudogene MZT1P1 1 OTTHUMG00000184268.1 pseudo_consens +6443 chr1 HAVANA gene 9729026 9824526 5559.0 - 0 ENSG00000171603.17 protein_coding CLSTN1 2 OTTHUMG00000001451.3 +6444 chr1 HAVANA gene 9826289 9828271 1983.0 - 0 ENSG00000280113.2 TEC AL357140.3 2 OTTHUMG00000192111.1 +6445 chr1 HAVANA gene 9848318 9850154 424.0 + 0 ENSG00000223989.1 antisense AL357140.1 2 OTTHUMG00000037769.1 +6446 chr1 HAVANA gene 9900614 9908034 762.0 + 0 ENSG00000285701.1 antisense AL357140.5 2 OTTHUMG00000193105.1 +6447 chr1 HAVANA gene 9848276 9910336 3339.0 - 0 ENSG00000178585.14 protein_coding CTNNBIP1 2 OTTHUMG00000001796.1 +6448 chr1 HAVANA gene 9922113 9943407 2794.0 - 0 ENSG00000162441.11 protein_coding LZIC 1 OTTHUMG00000001804.3 +6449 chr1 ENSEMBL gene 9947318 9947636 319.0 + 0 ENSG00000202415.1 misc_RNA RN7SKP269 3 +6450 chr1 HAVANA gene 9942923 9949974 440.0 + 0 ENSG00000228150.1 sense_intronic AL357140.2 2 OTTHUMG00000001805.1 ncRNA_host,overlapping_locus +6451 chr1 HAVANA gene 9950572 9960787 444.0 - 0 ENSG00000283611.2 unitary_pseudogene AL357140.4 2 OTTHUMG00000191753.2 +6452 chr1 ENSEMBL gene 9967381 9967458 78.0 + 0 ENSG00000265521.1 miRNA MIR5697 3 +6453 chr1 HAVANA gene 9983141 9984568 436.0 + 0 ENSG00000241326.1 sense_intronic AL603962.1 2 OTTHUMG00000001801.1 overlapping_locus +6454 chr1 HAVANA gene 9943428 9985501 4610.0 + 0 ENSG00000173614.13 protein_coding NMNAT1 1 OTTHUMG00000001799.6 ncRNA_host,overlapping_locus +6455 chr1 HAVANA gene 9997206 10016020 861.0 + 0 ENSG00000162444.11 protein_coding RBP7 2 OTTHUMG00000001798.2 +6456 chr1 HAVANA gene 10054445 10054781 337.0 - 0 ENSG00000224340.1 processed_pseudogene AL590639.1 1 OTTHUMG00000001800.1 pseudo_consens +6457 chr1 HAVANA gene 10058671 10059648 680.0 + 0 ENSG00000233623.2 processed_pseudogene PGAM1P11 1 OTTHUMG00000001802.2 pseudo_consens,overlapping_locus +6458 chr1 ENSEMBL gene 10163268 10163374 107.0 + 0 ENSG00000201746.1 snRNA RNU6-828P 3 +6459 chr1 HAVANA gene 10032832 10181239 9128.0 + 0 ENSG00000130939.18 protein_coding UBE4B 2 OTTHUMG00000001797.2 ncRNA_host,overlapping_locus +6460 chr1 ENSEMBL gene 10227718 10227803 86.0 + 0 ENSG00000264881.1 miRNA MIR1273D 3 +6461 chr1 ENSEMBL gene 10298966 10299072 107.0 + 0 ENSG00000199562.1 snRNA RNU6-37P 3 +6462 chr1 ENSEMBL gene 10306465 10306757 293.0 + 0 ENSG00000264501.2 misc_RNA RN7SL731P 3 +6463 chr1 HAVANA gene 10210805 10381603 17720.0 + 0 ENSG00000054523.17 protein_coding KIF1B 1 OTTHUMG00000001817.2 ncRNA_host +6464 chr1 HAVANA gene 10381906 10387150 2381.0 - 0 ENSG00000284735.1 lincRNA AL139424.3 2 OTTHUMG00000192294.2 +6465 chr1 HAVANA gene 10395416 10397432 1477.0 + 0 ENSG00000284642.1 lincRNA AL139424.2 2 OTTHUMG00000192295.1 +6466 chr1 HAVANA gene 10398592 10420144 2966.0 + 0 ENSG00000142657.20 protein_coding PGD 2 OTTHUMG00000001905.4 +6467 chr1 HAVANA gene 10429881 10430677 797.0 - 0 ENSG00000271989.1 antisense AL139424.1 2 OTTHUMG00000185648.1 +6468 chr1 HAVANA gene 10430443 10442809 1739.0 + 0 ENSG00000175279.21 protein_coding CENPS 1 OTTHUMG00000059085.10 overlapping_locus +6469 chr1 HAVANA gene 10449719 10451902 1130.0 + 0 ENSG00000241563.3 protein_coding CORT 2 OTTHUMG00000001906.4 overlapping_locus +6470 chr1 HAVANA gene 10430102 10452153 2244.0 + 0 ENSG00000251503.8 protein_coding CENPS-CORT 2 OTTHUMG00000162436.4 overlapping_locus +6471 chr1 HAVANA gene 10458555 10459338 467.0 + 0 ENSG00000203469.2 antisense AL354956.1 2 OTTHUMG00000001907.1 +6472 chr1 HAVANA gene 10456522 10472526 6622.0 - 0 ENSG00000160049.11 protein_coding DFFA 2 OTTHUMG00000001909.3 +6473 chr1 ENSEMBL gene 10616836 10617115 280.0 + 0 ENSG00000243267.3 misc_RNA RN7SL614P 3 +6474 chr1 HAVANA gene 10472288 10630758 2995.0 + 0 ENSG00000142655.12 protein_coding PEX14 2 OTTHUMG00000001908.2 ncRNA_host +6475 chr1 HAVANA gene 10639241 10654333 7923.0 + 0 ENSG00000272078.1 antisense AL139423.1 2 OTTHUMG00000185370.1 +6476 chr1 HAVANA gene 10636604 10796650 11336.0 - 0 ENSG00000130940.14 protein_coding CASZ1 1 OTTHUMG00000002035.5 +6477 chr1 HAVANA gene 10895761 10895998 238.0 + 0 ENSG00000225158.2 processed_pseudogene HSPE1P24 2 OTTHUMG00000002034.2 +6478 chr1 HAVANA gene 10946471 10982037 3573.0 - 0 ENSG00000175262.14 protein_coding C1orf127 1 OTTHUMG00000002032.5 +6479 chr1 HAVANA gene 10990978 10991797 494.0 - 0 ENSG00000215785.2 processed_pseudogene CFL1P6 1 OTTHUMG00000002033.1 pseudo_consens +6480 chr1 HAVANA gene 11012344 11026420 6071.0 + 0 ENSG00000120948.17 protein_coding TARDBP 2 OTTHUMG00000002120.16 overlapping_locus +6481 chr1 HAVANA gene 11029659 11030528 870.0 + 0 ENSG00000271895.2 antisense AL109811.3 2 OTTHUMG00000185649.2 overlapping_locus +6482 chr1 HAVANA gene 11012662 11030528 2205.0 + 0 ENSG00000277726.4 protein_coding AL109811.4 2 OTTHUMG00000186566.4 overlapping_locus +6483 chr1 HAVANA gene 11026523 11047233 4251.0 - 0 ENSG00000009724.16 protein_coding MASP2 2 OTTHUMG00000002121.1 +6484 chr1 HAVANA gene 11054584 11060024 1898.0 - 0 ENSG00000116649.9 protein_coding SRM 1 OTTHUMG00000002119.3 +6485 chr1 HAVANA gene 11068471 11073097 2682.0 + 0 ENSG00000226849.1 antisense AL109811.1 2 OTTHUMG00000034707.1 +6486 chr1 HAVANA gene 11066618 11099881 6003.0 - 0 ENSG00000171824.13 protein_coding EXOSC10 2 OTTHUMG00000002123.3 +6487 chr1 HAVANA gene 11099675 11102100 536.0 + 0 ENSG00000230337.1 antisense AL109811.2 1 OTTHUMG00000002122.1 +6488 chr1 HAVANA gene 11143898 11149537 763.0 + 0 ENSG00000225602.5 antisense MTOR-AS1 2 OTTHUMG00000002003.1 +6489 chr1 ENSEMBL gene 11152350 11152452 103.0 + 0 ENSG00000253086.1 snRNA RNU6-537P 3 +6490 chr1 HAVANA gene 11189341 11195981 2238.0 + 0 ENSG00000171819.4 protein_coding ANGPTL7 2 OTTHUMG00000002002.3 +6491 chr1 ENSEMBL gene 11226254 11226360 107.0 + 0 ENSG00000207451.1 snRNA RNU6-291P 3 +6492 chr1 HAVANA gene 11232963 11233112 150.0 + 0 ENSG00000238173.1 processed_pseudogene RPL39P6 1 OTTHUMG00000002000.1 pseudo_consens +6493 chr1 HAVANA gene 11106535 11262507 12119.0 - 0 ENSG00000198793.12 protein_coding MTOR 2 OTTHUMG00000002001.3 +6494 chr1 HAVANA gene 11278616 11279351 437.0 - 0 ENSG00000238199.1 processed_pseudogene UBE2V2P3 1 OTTHUMG00000002077.2 pseudo_consens +6495 chr1 HAVANA gene 11273206 11296049 5082.0 + 0 ENSG00000120942.13 protein_coding UBIAD1 2 OTTHUMG00000002075.2 +6496 chr1 HAVANA gene 11311734 11319093 742.0 - 0 ENSG00000284646.1 lincRNA AL031291.1 2 OTTHUMG00000192296.1 +6497 chr1 HAVANA gene 11425257 11425821 565.0 - 0 ENSG00000224338.2 processed_pseudogene MTCYBP45 2 OTTHUMG00000002073.2 +6498 chr1 HAVANA gene 11500803 11502016 1051.0 - 0 ENSG00000285833.1 antisense AL590989.1 2 OTTHUMG00000193175.1 +6499 chr1 HAVANA gene 11479166 11537584 6142.0 + 0 ENSG00000204624.7 protein_coding DISP3 2 OTTHUMG00000002074.2 +6500 chr1 HAVANA gene 11609531 11613355 1285.0 + 0 ENSG00000235643.1 lincRNA LINC01647 2 OTTHUMG00000002076.1 +6501 chr1 HAVANA gene 11623558 11643416 2094.0 + 0 ENSG00000284708.1 antisense AL031731.1 2 OTTHUMG00000192297.1 +6502 chr1 HAVANA gene 11637018 11655785 3416.0 - 0 ENSG00000116661.10 protein_coding FBXO2 2 OTTHUMG00000002072.5 +6503 chr1 HAVANA gene 11654375 11663327 3527.0 + 0 ENSG00000132879.13 protein_coding FBXO44 2 OTTHUMG00000002071.6 +6504 chr1 HAVANA gene 11664124 11674354 1811.0 + 0 ENSG00000116663.10 protein_coding FBXO6 2 OTTHUMG00000002229.1 +6505 chr1 HAVANA gene 11674480 11691650 3324.0 - 0 ENSG00000116670.14 protein_coding MAD2L2 2 OTTHUMG00000002231.4 +6506 chr1 HAVANA gene 11691729 11725857 7346.0 + 0 ENSG00000162490.6 protein_coding DRAXIN 2 OTTHUMG00000002227.1 +6507 chr1 HAVANA gene 11736084 11754802 2435.0 + 0 ENSG00000177674.15 protein_coding AGTRAP 2 OTTHUMG00000002230.5 +6508 chr1 HAVANA gene 11777077 11779619 1868.0 - 0 ENSG00000177553.6 antisense AL953897.1 2 OTTHUMG00000037775.1 +6509 chr1 HAVANA gene 11761787 11789585 6499.0 + 0 ENSG00000215910.7 protein_coding C1orf167 1 OTTHUMG00000002228.2 +6510 chr1 HAVANA gene 11785723 11806920 10214.0 - 0 ENSG00000177000.12 protein_coding MTHFR 2 OTTHUMG00000002277.7 +6511 chr1 ENSEMBL gene 11843812 11843984 173.0 + 0 ENSG00000276470.1 misc_RNA RF02156 3 +6512 chr1 ENSEMBL gene 11845549 11845697 149.0 + 0 ENSG00000278852.1 misc_RNA RF02157 3 +6513 chr1 ENSEMBL gene 11847442 11847549 108.0 + 0 ENSG00000275915.1 misc_RNA RF02158 3 +6514 chr1 HAVANA gene 11806096 11848079 8174.0 + 0 ENSG00000011021.22 protein_coding CLCN6 2 OTTHUMG00000002299.7 ncRNA_host,overlapping_locus +6515 chr1 HAVANA gene 11845709 11848345 1120.0 - 0 ENSG00000175206.10 protein_coding NPPA 2 OTTHUMG00000002388.2 +6516 chr1 HAVANA gene 11857464 11858931 694.0 - 0 ENSG00000120937.8 protein_coding NPPB 2 OTTHUMG00000002389.1 +6517 chr1 HAVANA gene 11877770 11880406 2637.0 + 0 ENSG00000224904.1 processed_pseudogene AL021155.1 1 OTTHUMG00000002390.1 pseudo_consens +6518 chr1 ENSEMBL gene 11908152 11908271 120.0 + 0 ENSG00000199347.1 snRNA RNU5E-1 3 +6519 chr1 ENSEMBL gene 11909808 11909927 120.0 - 0 ENSG00000201801.1 snRNA RNU5E-4P 3 +6520 chr1 HAVANA gene 11908147 11913232 737.0 + 0 ENSG00000285646.1 lincRNA AL021155.2 2 OTTHUMG00000193227.2 ncRNA_host +6521 chr1 HAVANA gene 11919591 11926428 3281.0 - 0 ENSG00000116685.15 protein_coding KIAA2013 2 OTTHUMG00000002391.1 +6522 chr1 HAVANA gene 11934205 11975538 5320.0 + 0 ENSG00000083444.16 protein_coding PLOD1 2 OTTHUMG00000002393.4 +6523 chr1 HAVANA gene 11980181 12013514 4973.0 + 0 ENSG00000116688.16 protein_coding MFN2 2 OTTHUMG00000002392.7 +6524 chr1 HAVANA gene 12017216 12017308 93.0 - 0 ENSG00000270914.1 processed_pseudogene AL096840.1 1 OTTHUMG00000184269.1 pseudo_consens +6525 chr1 ENSEMBL gene 12024012 12024124 113.0 - 0 ENSG00000202461.1 misc_RNA RF00019 3 +6526 chr1 ENSEMBL gene 12029158 12029222 65.0 + 0 ENSG00000276869.1 miRNA MIR6729 3 +6527 chr1 HAVANA gene 12019466 12032045 2821.0 + 0 ENSG00000116691.10 protein_coding MIIP 2 OTTHUMG00000002439.1 ncRNA_host +6528 chr1 ENSEMBL gene 12036740 12037014 275.0 - 0 ENSG00000243539.3 misc_RNA RN7SL649P 3 +6529 chr1 ENSEMBL gene 12077881 12077984 104.0 - 0 ENSG00000201135.1 snRNA RNU6-777P 3 +6530 chr1 HAVANA gene 12080293 12080547 255.0 - 0 ENSG00000227875.2 processed_pseudogene RPL23AP89 1 OTTHUMG00000001828.3 pseudo_consens +6531 chr1 HAVANA gene 12088441 12092264 1196.0 - 0 ENSG00000285604.1 antisense AL357835.1 2 OTTHUMG00000193101.1 +6532 chr1 HAVANA gene 12063377 12144207 3738.0 + 0 ENSG00000120949.14 protein_coding TNFRSF8 2 OTTHUMG00000001827.4 +6533 chr1 ENSEMBL gene 12166943 12167038 96.0 + 0 ENSG00000283789.1 miRNA MIR7846 3 +6534 chr1 ENSEMBL gene 12191713 12191773 61.0 + 0 ENSG00000263676.1 miRNA MIR4632 3 +6535 chr1 HAVANA gene 12167003 12209228 3766.0 + 0 ENSG00000028137.18 protein_coding TNFRSF1B 2 OTTHUMG00000001829.1 ncRNA_host +6536 chr1 HAVANA gene 12220794 12221109 316.0 - 0 ENSG00000225196.2 processed_pseudogene RPL10P17 2 OTTHUMG00000004233.3 +6537 chr1 ENSEMBL gene 12221148 12221271 124.0 - 0 ENSG00000252969.1 snoRNA RF00156 3 +6538 chr1 ENSEMBL gene 12507246 12507397 152.0 + 0 ENSG00000239149.1 snoRNA SNORA59A 3 +6539 chr1 HAVANA gene 12230030 12512047 20768.0 + 0 ENSG00000048707.15 protein_coding VPS13D 2 OTTHUMG00000013155.8 ncRNA_host +6540 chr1 HAVANA gene 12527724 12528420 438.0 + 0 ENSG00000229484.1 lincRNA AC243836.1 2 OTTHUMG00000013154.1 +6541 chr1 ENSEMBL gene 12569972 12570072 101.0 - 0 ENSG00000221340.1 snRNA RNU6ATAC18P 3 +6542 chr1 ENSEMBL gene 12578957 12579023 67.0 - 0 ENSG00000276830.1 miRNA MIR6730 3 +6543 chr1 HAVANA gene 12567910 12617731 3036.0 - 0 ENSG00000162496.8 protein_coding DHRS3 2 OTTHUMG00000001885.5 ncRNA_host +6544 chr1 HAVANA gene 12618900 12619244 345.0 - 0 ENSG00000272482.1 lincRNA AC254633.1 2 OTTHUMG00000185309.1 +6545 chr1 HAVANA gene 12644547 12667086 1575.0 + 0 ENSG00000204518.2 protein_coding AADACL4 2 OTTHUMG00000001889.1 +6546 chr1 HAVANA gene 12692909 12693020 112.0 + 0 ENSG00000226166.2 processed_pseudogene AC244670.1 2 OTTHUMG00000001886.2 +6547 chr1 HAVANA gene 12716115 12728759 4049.0 + 0 ENSG00000188984.11 protein_coding AADACL3 2 OTTHUMG00000001887.5 +6548 chr1 HAVANA gene 12746215 12763699 4118.0 + 0 ENSG00000157330.9 protein_coding C1orf158 2 OTTHUMG00000001888.4 +6549 chr1 HAVANA gene 12774841 12777906 1786.0 + 0 ENSG00000116726.4 protein_coding PRAMEF12 2 OTTHUMG00000001927.2 +6550 chr1 HAVANA gene 12791397 12796628 2439.0 + 0 ENSG00000116721.9 protein_coding PRAMEF1 2 OTTHUMG00000001928.2 +6551 chr1 HAVANA gene 12822686 12823159 378.0 - 0 ENSG00000228338.1 lincRNA LINC01784 2 OTTHUMG00000041465.1 +6552 chr1 HAVANA gene 12824605 12831410 1845.0 - 0 ENSG00000239810.3 protein_coding PRAMEF11 2 OTTHUMG00000001929.5 +6553 chr1 HAVANA gene 12838125 12841357 1417.0 - 0 ENSG00000231103.2 unprocessed_pseudogene PRAMEF30P 2 OTTHUMG00000001930.3 +6554 chr1 HAVANA gene 12847408 12848725 1108.0 - 0 ENSG00000179172.9 protein_coding HNRNPCL1 2 OTTHUMG00000001931.3 retrogene +6555 chr1 HAVANA gene 12857086 12861909 1642.0 + 0 ENSG00000120952.4 protein_coding PRAMEF2 2 OTTHUMG00000001986.1 +6556 chr1 HAVANA gene 12879224 12886201 1828.0 - 0 ENSG00000243073.3 protein_coding PRAMEF4 2 OTTHUMG00000001987.2 +6557 chr1 HAVANA gene 12892896 12898270 1525.0 - 0 ENSG00000187545.5 protein_coding PRAMEF10 2 OTTHUMG00000001981.3 +6558 chr1 HAVANA gene 12916610 12920482 1660.0 + 0 ENSG00000204510.5 protein_coding PRAMEF7 2 OTTHUMG00000001982.3 +6559 chr1 ENSEMBL gene 12922554 12922660 107.0 + 0 ENSG00000207434.1 snRNA RNU6-1072P 3 +6560 chr1 HAVANA gene 12926162 12928253 1139.0 + 0 ENSG00000234064.1 unprocessed_pseudogene PRAMEF29P 2 OTTHUMG00000001983.1 +6561 chr1 HAVANA gene 12938472 12947580 1784.0 - 0 ENSG00000232423.6 protein_coding PRAMEF6 2 OTTHUMG00000001984.2 +6562 chr1 HAVANA gene 13029339 13032130 1450.0 + 0 ENSG00000274178.2 unprocessed_pseudogene PRAMEF28P 2 OTTHUMG00000189309.1 overlapping_locus +6563 chr1 HAVANA gene 13049476 13056491 1863.0 - 0 ENSG00000274764.5 protein_coding PRAMEF27 2 OTTHUMG00000074727.3 +6564 chr1 HAVANA gene 13060869 13062229 1148.0 + 0 ENSG00000277058.2 protein_coding HNRNPCL3 2 OTTHUMG00000189236.2 retrogene +6565 chr1 HAVANA gene 13068677 13077884 1918.0 + 0 ENSG00000229571.7 protein_coding PRAMEF25 2 OTTHUMG00000074741.3 +6566 chr1 HAVANA gene 13095179 13097971 1447.0 - 0 ENSG00000277862.1 unprocessed_pseudogene PRAMEF34P 2 OTTHUMG00000074740.2 +6567 chr1 HAVANA gene 13104403 13105689 891.0 - 0 ENSG00000236179.1 unprocessed_pseudogene PRAMEF35P 2 OTTHUMG00000009502.2 +6568 chr1 HAVANA gene 13115496 13116854 1148.0 - 0 ENSG00000275774.2 protein_coding HNRNPCL2 2 OTTHUMG00000009503.4 +6569 chr1 HAVANA gene 13128818 13131615 1452.0 + 0 ENSG00000229978.1 transcribed_unprocessed_pseudogene PRAMEF36P 2 OTTHUMG00000009501.3 +6570 chr1 HAVANA gene 13146981 13147460 384.0 - 0 ENSG00000233336.1 lincRNA AC245056.1 2 OTTHUMG00000009500.2 +6571 chr1 HAVANA gene 13148905 13155961 1863.0 - 0 ENSG00000280267.4 protein_coding PRAMEF26 2 OTTHUMG00000009499.3 +6572 chr1 HAVANA gene 13164586 13165467 882.0 - 0 ENSG00000179412.10 protein_coding HNRNPCL4 2 OTTHUMG00000189238.2 retrogene +6573 chr1 HAVANA gene 13172455 13179464 1863.0 + 0 ENSG00000204505.4 protein_coding PRAMEF9 2 OTTHUMG00000189239.1 +6574 chr1 HAVANA gene 13196330 13201409 2300.0 - 0 ENSG00000279169.2 protein_coding PRAMEF13 2 OTTHUMG00000189240.2 +6575 chr1 HAVANA gene 13222705 13226106 2067.0 - 0 ENSG00000279804.2 protein_coding PRAMEF18 2 OTTHUMG00000191961.2 +6576 chr1 HAVANA gene 13245863 13248652 1371.0 + 0 ENSG00000250894.1 unprocessed_pseudogene PRAMEF31P 2 OTTHUMG00000001985.2 +6577 chr1 HAVANA gene 13254212 13263314 1720.0 + 0 ENSG00000270601.4 protein_coding PRAMEF5 2 OTTHUMG00000184604.4 +6578 chr1 HAVANA gene 13273539 13275627 1068.0 - 0 ENSG00000231219.1 unprocessed_pseudogene PRAMEF32P 2 OTTHUMG00000008039.2 +6579 chr1 ENSEMBL gene 13279125 13279231 107.0 - 0 ENSG00000207511.1 snRNA RNU6-771P 3 +6580 chr1 HAVANA gene 13281035 13285174 1937.0 - 0 ENSG00000182330.10 protein_coding PRAMEF8 2 OTTHUMG00000008037.2 +6581 chr1 HAVANA gene 13303539 13308907 1518.0 + 0 ENSG00000237700.2 protein_coding PRAMEF33 2 OTTHUMG00000008036.3 +6582 chr1 HAVANA gene 13315581 13322598 1865.0 + 0 ENSG00000204501.7 protein_coding PRAMEF15 2 OTTHUMG00000008035.2 +6583 chr1 HAVANA gene 13324039 13324518 384.0 + 0 ENSG00000228229.2 lincRNA AC243961.1 2 OTTHUMG00000008038.2 +6584 chr1 HAVANA gene 13342034 13347134 2301.0 - 0 ENSG00000204481.7 protein_coding PRAMEF14 2 OTTHUMG00000007916.3 +6585 chr1 HAVANA gene 13369067 13371900 1440.0 - 0 ENSG00000204480.8 protein_coding PRAMEF19 2 OTTHUMG00000007919.5 +6586 chr1 HAVANA gene 13389632 13392629 1578.0 + 0 ENSG00000204479.4 protein_coding PRAMEF17 2 OTTHUMG00000007909.3 +6587 chr1 HAVANA gene 13410450 13421328 1597.0 + 0 ENSG00000204478.9 protein_coding PRAMEF20 2 OTTHUMG00000007911.2 +6588 chr1 HAVANA gene 13474977 13514048 2209.0 - 0 ENSG00000162494.5 protein_coding LRRC38 2 OTTHUMG00000007918.1 +6589 chr1 HAVANA gene 13513220 13516270 477.0 + 0 ENSG00000259961.1 antisense AL354712.1 2 OTTHUMG00000007920.1 +6590 chr1 HAVANA gene 13555001 13555694 371.0 + 0 ENSG00000215909.3 processed_pseudogene BRWD1P1 1 OTTHUMG00000007922.1 pseudo_consens +6591 chr1 HAVANA gene 13583465 13617957 3707.0 + 0 ENSG00000162493.16 protein_coding PDPN 1 OTTHUMG00000007912.5 +6592 chr1 ENSEMBL gene 13623184 13623284 101.0 - 0 ENSG00000222952.1 rRNA_pseudogene RNA5SP41 3 +6593 chr1 HAVANA gene 13657311 13659910 379.0 - 0 ENSG00000237445.2 lincRNA AL359771.1 2 OTTHUMG00000007915.2 +6594 chr1 ENSEMBL gene 13696070 13696199 130.0 - 0 ENSG00000253085.1 scaRNA RF00564 3 +6595 chr1 HAVANA gene 13700198 13825079 10923.0 + 0 ENSG00000116731.22 protein_coding PRDM2 2 OTTHUMG00000007917.6 +6596 chr1 ENSEMBL gene 14124233 14124335 103.0 - 0 ENSG00000252151.1 snRNA RNU6-1265P 3 +6597 chr1 HAVANA gene 14221891 14223118 282.0 - 0 ENSG00000231606.1 lincRNA AL357873.1 2 OTTHUMG00000002047.1 +6598 chr1 HAVANA gene 14348955 14391575 764.0 - 0 ENSG00000234593.2 lincRNA KAZN-AS1 2 OTTHUMG00000002044.2 +6599 chr1 HAVANA gene 14692129 14692613 326.0 - 0 ENSG00000235829.1 processed_pseudogene TBCAP2 1 OTTHUMG00000037853.1 pseudo_consens +6600 chr1 HAVANA gene 13892792 15118043 13841.0 + 0 ENSG00000189337.16 protein_coding KAZN 2 OTTHUMG00000002042.7 +6601 chr1 HAVANA gene 15111815 15153237 7873.0 - 0 ENSG00000175147.12 antisense TMEM51-AS1 2 OTTHUMG00000002043.7 +6602 chr1 HAVANA gene 15164344 15171317 559.0 - 0 ENSG00000204464.7 lincRNA C1orf195 2 OTTHUMG00000037852.1 +6603 chr1 HAVANA gene 15191828 15192845 710.0 - 0 ENSG00000215720.4 processed_pseudogene AL035405.1 1 OTTHUMG00000002045.2 pseudo_consens +6604 chr1 HAVANA gene 15152532 15220480 2240.0 + 0 ENSG00000171729.13 protein_coding TMEM51 1 OTTHUMG00000002046.4 +6605 chr1 HAVANA gene 15226373 15227549 966.0 + 0 ENSG00000278480.1 processed_pseudogene AL391094.1 2 OTTHUMG00000187520.1 +6606 chr1 HAVANA gene 15334166 15335464 727.0 - 0 ENSG00000236045.1 antisense AL031283.3 2 OTTHUMG00000035304.1 overlapping_locus +6607 chr1 HAVANA gene 15326680 15343876 3105.0 - 0 ENSG00000233485.1 antisense AL031283.2 2 OTTHUMG00000002089.1 overlapping_locus +6608 chr1 HAVANA gene 15247272 15400283 12805.0 + 0 ENSG00000142621.19 protein_coding FHAD1 1 OTTHUMG00000002088.11 +6609 chr1 HAVANA gene 15402979 15409433 5178.0 - 0 ENSG00000228140.1 lincRNA AL031283.1 2 OTTHUMG00000002257.1 +6610 chr1 HAVANA gene 15409895 15430343 2531.0 + 0 ENSG00000142634.12 protein_coding EFHD2 2 OTTHUMG00000002254.1 +6611 chr1 HAVANA gene 15438439 15449242 3486.0 + 0 ENSG00000162438.11 protein_coding CTRC 2 OTTHUMG00000002255.1 +6612 chr1 HAVANA gene 15456728 15472091 1519.0 + 0 ENSG00000142615.7 protein_coding CELA2A 2 OTTHUMG00000002258.1 overlapping_locus +6613 chr1 HAVANA gene 15465909 15491400 1457.0 + 0 ENSG00000215704.9 protein_coding CELA2B 2 OTTHUMG00000002259.2 overlapping_locus +6614 chr1 HAVANA gene 15490832 15526534 5269.0 - 0 ENSG00000132906.17 protein_coding CASP9 1 OTTHUMG00000002256.7 +6615 chr1 ENSEMBL gene 15542165 15542304 140.0 + 0 ENSG00000251866.1 scaRNA SCARNA21B 3 +6616 chr1 HAVANA gene 15565611 15565956 346.0 - 0 ENSG00000272510.1 antisense AL121992.3 2 OTTHUMG00000185680.1 +6617 chr1 HAVANA gene 15572353 15585110 2500.0 - 0 ENSG00000116771.5 protein_coding AGMAT 2 OTTHUMG00000002357.1 +6618 chr1 HAVANA gene 15526813 15592379 8563.0 + 0 ENSG00000116138.12 protein_coding DNAJC16 2 OTTHUMG00000002358.3 ncRNA_host +6619 chr1 HAVANA gene 15586136 15603626 2845.0 - 0 ENSG00000237301.1 antisense AL121992.1 2 OTTHUMG00000002359.1 +6620 chr1 HAVANA gene 15604597 15605043 447.0 + 0 ENSG00000235084.3 processed_pseudogene CHCHD2P6 1 OTTHUMG00000002360.1 pseudo_consens +6621 chr1 ENSEMBL gene 15608078 15608145 68.0 - 0 ENSG00000252417.1 snRNA RNU7-179P 3 +6622 chr1 HAVANA gene 15614643 15614867 225.0 - 0 ENSG00000236500.1 processed_pseudogene CD24P1 2 OTTHUMG00000002361.1 +6623 chr1 HAVANA gene 15659869 15661722 1854.0 + 0 ENSG00000215695.1 protein_coding RSC1A1 2 OTTHUMG00000067830.2 overlapping_locus +6624 chr1 HAVANA gene 15617500 15669044 12136.0 + 0 ENSG00000197312.11 protein_coding DDI2 2 OTTHUMG00000002381.2 overlapping_locus +6625 chr1 HAVANA gene 15682873 15683128 256.0 - 0 ENSG00000271742.1 lincRNA AL121992.2 2 OTTHUMG00000185681.1 +6626 chr1 HAVANA gene 15684332 15734769 4122.0 + 0 ENSG00000116786.12 protein_coding PLEKHM2 2 OTTHUMG00000003062.2 +6627 chr1 HAVANA gene 15720312 15736896 1533.0 - 0 ENSG00000237938.5 antisense AL450998.2 2 OTTHUMG00000003064.3 +6628 chr1 HAVANA gene 15736405 15741396 3195.0 + 0 ENSG00000162461.7 protein_coding SLC25A34 2 OTTHUMG00000003063.1 +6629 chr1 HAVANA gene 15742422 15747982 1520.0 + 0 ENSG00000162460.6 protein_coding TMEM82 2 OTTHUMG00000003065.2 +6630 chr1 HAVANA gene 15740051 15749896 639.0 - 0 ENSG00000224459.1 antisense SLC25A34-AS1 2 OTTHUMG00000003078.1 +6631 chr1 HAVANA gene 15756607 15786594 4716.0 + 0 ENSG00000162458.12 protein_coding FBLIM1 2 OTTHUMG00000003079.7 +6632 chr1 HAVANA gene 15792796 15793285 490.0 + 0 ENSG00000224321.1 processed_pseudogene RPL12P14 1 OTTHUMG00000003108.2 pseudo_consens +6633 chr1 HAVANA gene 15807169 15809348 2180.0 - 0 ENSG00000233954.6 protein_coding UQCRHL 2 OTTHUMG00000003109.3 +6634 chr1 HAVANA gene 15828232 15828669 438.0 + 0 ENSG00000178715.8 processed_pseudogene AL450998.1 1 OTTHUMG00000003169.2 pseudo_consens +6635 chr1 HAVANA gene 15834474 15848147 2473.0 - 0 ENSG00000179743.4 antisense FLJ37453 2 OTTHUMG00000009375.2 +6636 chr1 HAVANA gene 15917698 15917908 211.0 - 0 ENSG00000270620.1 unprocessed_pseudogene AL034555.1 1 OTTHUMG00000184271.1 pseudo_consens +6637 chr1 HAVANA gene 15847864 15940460 13294.0 + 0 ENSG00000065526.10 protein_coding SPEN 2 OTTHUMG00000009376.2 +6638 chr1 HAVANA gene 15969632 15970194 563.0 + 0 ENSG00000234607.2 processed_pseudogene AL355994.4 1 OTTHUMG00000009378.2 pseudo_consens +6639 chr1 HAVANA gene 15941869 15976132 4240.0 - 0 ENSG00000116809.11 protein_coding ZBTB17 2 OTTHUMG00000009377.3 +6640 chr1 HAVANA gene 15988182 15988441 260.0 + 0 ENSG00000231353.1 unprocessed_pseudogene AL355994.1 2 OTTHUMG00000009380.1 +6641 chr1 HAVANA gene 15989140 15989375 236.0 - 0 ENSG00000275503.1 processed_pseudogene AL355994.5 2 OTTHUMG00000187521.1 +6642 chr1 HAVANA gene 15989871 15994751 962.0 + 0 ENSG00000224966.4 unprocessed_pseudogene TBC1D3P6 2 OTTHUMG00000009379.1 +6643 chr1 HAVANA gene 16006160 16006671 466.0 - 0 ENSG00000233078.1 antisense AL355994.3 2 OTTHUMG00000009524.1 +6644 chr1 HAVANA gene 16004236 16008807 3039.0 + 0 ENSG00000183888.4 protein_coding SRARP 2 OTTHUMG00000009523.1 +6645 chr1 HAVANA gene 16014028 16019594 3910.0 - 0 ENSG00000173641.17 protein_coding HSPB7 1 OTTHUMG00000009531.2 +6646 chr1 HAVANA gene 16018875 16034050 3476.0 + 0 ENSG00000186510.11 protein_coding CLCNKA 2 OTTHUMG00000009529.3 +6647 chr1 HAVANA gene 16035178 16040029 704.0 - 0 ENSG00000232456.1 unprocessed_pseudogene AL355994.2 2 OTTHUMG00000009526.1 +6648 chr1 HAVANA gene 16043736 16057308 2939.0 + 0 ENSG00000184908.17 protein_coding CLCNKB 2 OTTHUMG00000009530.2 +6649 chr1 HAVANA gene 16057769 16073632 1701.0 - 0 ENSG00000185519.8 protein_coding FAM131C 2 OTTHUMG00000009525.1 +6650 chr1 HAVANA gene 16124337 16156087 4159.0 - 0 ENSG00000142627.12 protein_coding EPHA2 2 OTTHUMG00000009527.2 +6651 chr1 HAVANA gene 16155211 16157329 904.0 + 0 ENSG00000227959.1 antisense AL451042.2 2 OTTHUMG00000009528.1 +6652 chr1 HAVANA gene 16159266 16161883 544.0 + 0 ENSG00000224621.1 antisense AL451042.1 1 OTTHUMG00000035305.1 +6653 chr1 HAVANA gene 16197854 16198357 439.0 + 0 ENSG00000234166.1 antisense ARHGEF19-AS1 2 OTTHUMG00000002220.1 +6654 chr1 HAVANA gene 16197854 16212609 3745.0 - 0 ENSG00000142632.16 protein_coding ARHGEF19 2 OTTHUMG00000002219.4 +6655 chr1 HAVANA gene 16215909 16228027 1990.0 - 0 ENSG00000237276.8 transcribed_unprocessed_pseudogene ANO7L1 2 OTTHUMG00000002221.3 +6656 chr1 HAVANA gene 16231700 16237162 1545.0 - 0 ENSG00000132881.11 protein_coding CPLANE2 2 OTTHUMG00000002214.4 +6657 chr1 HAVANA gene 16241213 16241398 186.0 - 0 ENSG00000233929.1 processed_pseudogene MT1XP1 1 OTTHUMG00000037883.1 pseudo_consens +6658 chr1 HAVANA gene 16246839 16352454 8984.0 - 0 ENSG00000037637.10 protein_coding FBXO42 2 OTTHUMG00000002218.2 +6659 chr1 HAVANA gene 16369150 16369530 381.0 - 0 ENSG00000226457.1 processed_pseudogene RPL22P3 1 OTTHUMG00000002215.1 pseudo_consens +6660 chr1 HAVANA gene 16352575 16398145 4747.0 + 0 ENSG00000055070.16 protein_coding SZRD1 2 OTTHUMG00000002217.5 +6661 chr1 HAVANA gene 16387117 16437424 4506.0 - 0 ENSG00000187144.11 protein_coding SPATA21 1 OTTHUMG00000002312.3 +6662 chr1 HAVANA gene 16440672 16460078 5559.0 + 0 ENSG00000157191.19 protein_coding NECAP2 1 OTTHUMG00000002313.4 +6663 chr1 HAVANA gene 16460948 16468481 3245.0 + 0 ENSG00000226029.1 lincRNA LINC01772 2 OTTHUMG00000002314.1 +6664 chr1 HAVANA gene 16467436 16499257 6813.0 - 0 ENSG00000080947.14 transcribed_unprocessed_pseudogene CROCCP3 2 OTTHUMG00000037885.3 +6665 chr1 ENSEMBL gene 16514122 16514285 164.0 - 0 ENSG00000206652.1 snRNA RNU1-1 3 +6666 chr1 HAVANA gene 16514645 16515754 1110.0 + 0 ENSG00000261135.1 lincRNA AL137802.2 2 OTTHUMG00000175735.1 +6667 chr1 HAVANA gene 16515034 16521788 1558.0 + 0 ENSG00000285853.1 lincRNA AL137802.3 2 OTTHUMG00000193346.1 overlapping_locus +6668 chr1 HAVANA gene 16520694 16521796 327.0 + 0 ENSG00000224174.2 lincRNA AL137802.1 2 OTTHUMG00000002490.3 overlapping_locus +6669 chr1 ENSEMBL gene 16534081 16534224 144.0 - 0 ENSG00000277344.1 snRNA RNU1-6P 3 +6670 chr1 HAVANA gene 16533886 16536172 2068.0 - 0 ENSG00000233421.4 lincRNA LINC01783 2 OTTHUMG00000002488.1 ncRNA_host +6671 chr1 HAVANA gene 16548651 16552531 882.0 - 0 ENSG00000225710.1 unprocessed_pseudogene AL355149.1 1 OTTHUMG00000057481.1 pseudo_consens +6672 chr1 HAVANA gene 16562319 16613562 12212.0 - 0 ENSG00000219481.10 protein_coding NBPF1 2 OTTHUMG00000002487.10 +6673 chr1 HAVANA gene 16617391 16617729 339.0 + 0 ENSG00000271732.1 lincRNA AL137798.1 2 OTTHUMG00000185682.1 +6674 chr1 HAVANA gene 16642767 16643109 166.0 - 0 ENSG00000283773.1 transcribed_unprocessed_pseudogene AL137798.3 2 OTTHUMG00000191932.1 overlapping_locus +6675 chr1 HAVANA gene 16645622 16650289 2291.0 + 0 ENSG00000186301.8 unprocessed_pseudogene MST1P2 2 OTTHUMG00000057487.4 +6676 chr1 HAVANA gene 16618253 16657232 5606.0 - 0 ENSG00000215908.10 transcribed_unprocessed_pseudogene CROCCP2 2 OTTHUMG00000037884.9 overlapping_locus +6677 chr1 ENSEMBL gene 16666785 16666948 164.0 - 0 ENSG00000207513.1 snRNA RNU1-3 3 +6678 chr1 HAVANA gene 16656879 16667524 817.0 + 0 ENSG00000282143.1 lincRNA AL137798.2 2 OTTHUMG00000191420.1 +6679 chr1 HAVANA gene 16685621 16686055 435.0 - 0 ENSG00000236698.1 processed_pseudogene EIF1AXP1 1 OTTHUMG00000002579.1 pseudo_consens +6680 chr1 HAVANA gene 16681097 16688749 1351.0 - 0 ENSG00000280114.1 unprocessed_pseudogene AL021920.2 1 OTTHUMG00000189243.1 pseudo_consens +6681 chr1 HAVANA gene 16701546 16705594 406.0 + 0 ENSG00000279151.1 lincRNA AL021920.1 2 OTTHUMG00000189501.1 +6682 chr1 HAVANA gene 16687339 16720157 3178.0 - 0 ENSG00000268869.5 transcribed_unprocessed_pseudogene ESPNP 1 OTTHUMG00000000803.5 pseudo_consens +6683 chr1 ENSEMBL gene 16740516 16740679 164.0 + 0 ENSG00000207389.1 snRNA RNU1-4 3 +6684 chr1 HAVANA gene 16739938 16750589 819.0 - 0 ENSG00000282740.1 lincRNA AL021920.3 2 OTTHUMG00000191419.1 +6685 chr1 HAVANA gene 16740280 16750968 762.0 + 0 ENSG00000227684.2 transcribed_unprocessed_pseudogene CROCCP4 2 OTTHUMG00000057485.2 overlapping_locus +6686 chr1 HAVANA gene 16754910 16770237 5180.0 - 0 ENSG00000186715.11 transcribed_unprocessed_pseudogene MST1L 1 OTTHUMG00000002578.4 +6687 chr1 HAVANA gene 16851257 16853129 837.0 - 0 ENSG00000223643.6 lincRNA BX284668.1 1 OTTHUMG00000002201.3 +6688 chr1 ENSEMBL gene 16858949 16859021 73.0 - 0 ENSG00000263811.1 miRNA MIR3675 3 +6689 chr1 HAVANA gene 16855407 16859284 882.0 + 0 ENSG00000230239.1 unprocessed_pseudogene BX284668.3 1 OTTHUMG00000002202.1 pseudo_consens +6690 chr1 ENSEMBL gene 16873708 16873851 144.0 + 0 ENSG00000277234.1 snRNA RNU1-5P 3 +6691 chr1 HAVANA gene 16870945 16874092 2963.0 + 0 ENSG00000228549.3 lincRNA BX284668.2 2 OTTHUMG00000002203.1 ncRNA_host,overlapping_locus +6692 chr1 HAVANA gene 16889095 16889602 508.0 + 0 ENSG00000235241.1 processed_pseudogene BX284668.4 2 OTTHUMG00000002205.1 overlapping_locus +6693 chr1 HAVANA gene 16888538 16889649 508.0 - 0 ENSG00000238142.1 lincRNA BX284668.5 1 OTTHUMG00000002204.1 +6694 chr1 ENSEMBL gene 16895980 16896143 164.0 + 0 ENSG00000207005.1 snRNA RNU1-2 3 +6695 chr1 HAVANA gene 16904339 16904776 438.0 - 0 ENSG00000272426.1 lincRNA BX284668.6 2 OTTHUMG00000185683.1 +6696 chr1 HAVANA gene 16740273 16972979 8871.0 + 0 ENSG00000058453.16 protein_coding CROCC 2 OTTHUMG00000002200.9 ncRNA_host,overlapping_locus +6697 chr1 HAVANA gene 16974502 16980835 2915.0 - 0 ENSG00000117122.13 protein_coding MFAP2 2 OTTHUMG00000002290.1 +6698 chr1 HAVANA gene 16978926 17005091 636.0 + 0 ENSG00000226526.1 antisense AL049569.1 2 OTTHUMG00000002292.1 +6699 chr1 HAVANA gene 16985958 17011928 5253.0 - 0 ENSG00000159363.17 protein_coding ATP13A2 1 OTTHUMG00000002293.4 +6700 chr1 HAVANA gene 17018722 17054170 2462.0 - 0 ENSG00000117118.9 protein_coding SDHB 2 OTTHUMG00000002289.3 +6701 chr1 HAVANA gene 17066761 17119435 5984.0 - 0 ENSG00000117115.12 protein_coding PADI2 2 OTTHUMG00000002295.1 +6702 chr1 HAVANA gene 17189783 17197617 4676.0 + 0 ENSG00000204362.6 lincRNA AL590644.1 2 OTTHUMG00000002291.2 +6703 chr1 HAVANA gene 17193232 17201733 1228.0 - 0 ENSG00000282843.1 lincRNA AL590644.3 2 OTTHUMG00000191586.1 +6704 chr1 HAVANA gene 17205126 17246005 4903.0 + 0 ENSG00000142623.10 protein_coding PADI1 2 OTTHUMG00000002294.4 +6705 chr1 ENSEMBL gene 17277889 17277975 87.0 + 0 ENSG00000266634.1 miRNA MIR3972 3 +6706 chr1 HAVANA gene 17249098 17284233 3189.0 + 0 ENSG00000142619.4 protein_coding PADI3 2 OTTHUMG00000002373.1 ncRNA_host +6707 chr1 HAVANA gene 17308195 17364004 2971.0 + 0 ENSG00000159339.13 protein_coding PADI4 2 OTTHUMG00000002371.1 +6708 chr1 HAVANA gene 17372196 17401699 2396.0 + 0 ENSG00000276747.1 protein_coding PADI6 2 OTTHUMG00000002372.7 reference_genome_error +6709 chr1 HAVANA gene 17406760 17407382 311.0 + 0 ENSG00000227751.1 antisense AC004824.1 2 OTTHUMG00000037449.1 +6710 chr1 HAVANA gene 17406760 17439724 4126.0 - 0 ENSG00000179051.13 protein_coding RCC2 2 OTTHUMG00000002513.1 +6711 chr1 HAVANA gene 17539835 17697874 7817.0 + 0 ENSG00000074964.16 protein_coding ARHGEF10L 2 OTTHUMG00000002514.3 +6712 chr1 HAVANA gene 17717687 17749978 610.0 + 0 ENSG00000236648.1 lincRNA AL136529.1 1 OTTHUMG00000002515.1 +6713 chr1 HAVANA gene 17755313 17827063 1864.0 + 0 ENSG00000117148.7 protein_coding ACTL8 2 OTTHUMG00000002512.1 +6714 chr1 HAVANA gene 18015712 18045612 2013.0 + 0 ENSG00000284653.1 lincRNA AL357509.1 2 OTTHUMG00000192298.1 +6715 chr1 HAVANA gene 18065657 18074412 2471.0 + 0 ENSG00000261781.1 lincRNA LINC01654 2 OTTHUMG00000175750.1 +6716 chr1 HAVANA gene 18109389 18115861 6473.0 + 0 ENSG00000280222.1 TEC AL365209.1 2 OTTHUMG00000175756.1 overlapping_locus +6717 chr1 HAVANA gene 18166929 18179346 430.0 - 0 ENSG00000230035.2 antisense IGSF21-AS1 2 OTTHUMG00000002434.2 +6718 chr1 HAVANA gene 18107746 18378483 3085.0 + 0 ENSG00000117154.11 protein_coding IGSF21 2 OTTHUMG00000002432.3 overlapping_locus +6719 chr1 HAVANA gene 18385829 18388514 491.0 + 0 ENSG00000225387.1 lincRNA AL591896.1 1 OTTHUMG00000002437.1 +6720 chr1 HAVANA gene 18480982 18486126 5145.0 + 0 ENSG00000179023.8 protein_coding KLHDC7A 2 OTTHUMG00000002431.3 +6721 chr1 HAVANA gene 18513118 18513383 266.0 + 0 ENSG00000235282.3 processed_pseudogene DYNLL1P3 1 OTTHUMG00000002435.4 pseudo_consens +6722 chr1 HAVANA gene 18595414 18595636 223.0 + 0 ENSG00000225478.2 processed_pseudogene AL031737.1 2 OTTHUMG00000002436.3 +6723 chr1 HAVANA gene 18631006 18748866 6313.0 + 0 ENSG00000009709.11 protein_coding PAX7 2 OTTHUMG00000002433.2 +6724 chr1 HAVANA gene 18839599 18859682 2542.0 - 0 ENSG00000179002.5 protein_coding TAS1R2 1 OTTHUMG00000002442.2 overlapping_locus +6725 chr1 ENSEMBL gene 18883202 18883275 74.0 - 0 ENSG00000265606.1 miRNA MIR4695 3 +6726 chr1 ENSEMBL gene 18897071 18897148 78.0 - 0 ENSG00000221662.1 miRNA MIR1290 3 +6727 chr1 HAVANA gene 18871430 18902781 3689.0 - 0 ENSG00000159423.16 protein_coding ALDH4A1 1 OTTHUMG00000002443.6 ncRNA_host,overlapping_locus +6728 chr1 HAVANA gene 18849273 18921121 4369.0 - 0 ENSG00000255275.3 protein_coding AL080251.1 2 OTTHUMG00000167131.3 ncRNA_host,overlapping_locus +6729 chr1 HAVANA gene 18904281 18956686 6188.0 - 0 ENSG00000169991.10 protein_coding IFFO2 1 OTTHUMG00000002499.2 overlapping_locus +6730 chr1 HAVANA gene 19072110 19075511 3402.0 - 0 ENSG00000272084.1 3prime_overlapping_ncRNA AL137127.1 2 OTTHUMG00000185684.1 overlapping_locus +6731 chr1 HAVANA gene 19074506 19210276 24675.0 - 0 ENSG00000127481.14 protein_coding UBR4 2 OTTHUMG00000002498.5 overlapping_locus +6732 chr1 HAVANA gene 19210501 19240704 507.0 + 0 ENSG00000230424.1 antisense AL035413.1 2 OTTHUMG00000037839.1 +6733 chr1 HAVANA gene 19215664 19251552 10650.0 - 0 ENSG00000127463.14 protein_coding EMC1 1 OTTHUMG00000002497.5 +6734 chr1 HAVANA gene 19251539 19260128 2822.0 + 0 ENSG00000053372.4 protein_coding MRTO4 2 OTTHUMG00000002496.3 +6735 chr1 HAVANA gene 19265982 19274194 2768.0 - 0 ENSG00000211454.13 polymorphic_pseudogene AKR7L 2 OTTHUMG00000002520.5 +6736 chr1 HAVANA gene 19282558 19289250 1710.0 - 0 ENSG00000162482.4 protein_coding AKR7A3 2 OTTHUMG00000002523.1 +6737 chr1 HAVANA gene 19297080 19297903 525.0 + 0 ENSG00000270728.1 processed_pseudogene AL035413.2 1 OTTHUMG00000184272.1 pseudo_consens +6738 chr1 ENSEMBL gene 19305076 19305182 107.0 - 0 ENSG00000200403.1 snRNA RNU6-1099P 3 +6739 chr1 HAVANA gene 19303965 19312146 1781.0 - 0 ENSG00000053371.12 protein_coding AKR7A2 2 OTTHUMG00000002522.2 ncRNA_host +6740 chr1 HAVANA gene 19312326 19329300 2686.0 + 0 ENSG00000040487.12 protein_coding PQLC2 1 OTTHUMG00000002521.7 +6741 chr1 ENSEMBL gene 19424384 19424671 288.0 + 0 ENSG00000240490.3 misc_RNA RN7SL277P 3 +6742 chr1 HAVANA gene 19338776 19485539 3238.0 - 0 ENSG00000077549.17 protein_coding CAPZB 2 OTTHUMG00000002556.6 +6743 chr1 ENSEMBL gene 19510593 19510733 141.0 + 0 ENSG00000201609.1 snRNA RNU4-28P 3 +6744 chr1 HAVANA gene 19591802 19596832 207.0 - 0 ENSG00000235185.1 antisense AL031727.2 2 OTTHUMG00000002711.1 +6745 chr1 HAVANA gene 19608114 19608568 455.0 + 0 ENSG00000226396.1 processed_pseudogene AL031727.1 1 OTTHUMG00000002695.2 pseudo_consens,overlapping_locus +6746 chr1 HAVANA gene 19484403 19629821 5480.0 + 0 ENSG00000173436.14 protein_coding MINOS1 2 OTTHUMG00000002712.3 ncRNA_host,overlapping_locus +6747 chr1 HAVANA gene 19597067 19656927 1276.0 + 0 ENSG00000270136.6 protein_coding MINOS1-NBL1 2 OTTHUMG00000183956.2 overlapping_locus +6748 chr1 HAVANA gene 19596979 19658456 3596.0 + 0 ENSG00000158747.14 protein_coding NBL1 1 OTTHUMG00000002700.7 overlapping_locus +6749 chr1 HAVANA gene 19665287 19679562 1984.0 + 0 ENSG00000158748.3 protein_coding HTR6 2 OTTHUMG00000002713.1 +6750 chr1 HAVANA gene 19682213 19799945 4054.0 - 0 ENSG00000162542.13 protein_coding TMCO4 2 OTTHUMG00000002697.1 +6751 chr1 HAVANA gene 19814029 19815278 1250.0 - 0 ENSG00000178828.6 protein_coding RNF186 2 OTTHUMG00000002709.1 +6752 chr1 HAVANA gene 19814367 19819502 447.0 + 0 ENSG00000235434.1 antisense AL391883.1 1 OTTHUMG00000002710.1 +6753 chr1 HAVANA gene 19882513 19912945 6767.0 + 0 ENSG00000169914.5 protein_coding OTUD3 2 OTTHUMG00000002696.1 +6754 chr1 HAVANA gene 19920009 19923617 785.0 - 0 ENSG00000188784.4 protein_coding PLA2G2E 2 OTTHUMG00000002702.1 +6755 chr1 ENSEMBL gene 19970969 19971269 301.0 + 0 ENSG00000242688.3 misc_RNA RN7SL304P 3 +6756 chr1 HAVANA gene 19975431 19980416 1685.0 - 0 ENSG00000188257.11 protein_coding PLA2G2A 2 OTTHUMG00000002699.4 +6757 chr1 HAVANA gene 20028179 20091190 2607.0 + 0 ENSG00000127472.10 protein_coding PLA2G5 2 OTTHUMG00000002698.3 +6758 chr1 HAVANA gene 20111939 20119566 2681.0 - 0 ENSG00000117215.14 protein_coding PLA2G2D 2 OTTHUMG00000002701.1 +6759 chr1 HAVANA gene 20139326 20150386 6440.0 + 0 ENSG00000158786.4 protein_coding PLA2G2F 2 OTTHUMG00000002704.1 +6760 chr1 HAVANA gene 20154338 20160568 2639.0 + 0 ENSG00000227066.1 lincRNA Z98257.1 1 OTTHUMG00000002703.1 +6761 chr1 HAVANA gene 20161253 20177424 3298.0 - 0 ENSG00000187980.6 protein_coding PLA2G2C 1 OTTHUMG00000002705.4 +6762 chr1 HAVANA gene 20184242 20186486 510.0 - 0 ENSG00000225986.1 antisense UBXN10-AS1 1 OTTHUMG00000002706.1 +6763 chr1 HAVANA gene 20186085 20196048 5571.0 + 0 ENSG00000162543.5 protein_coding UBXN10 2 OTTHUMG00000002708.1 +6764 chr1 HAVANA gene 20243095 20244655 480.0 + 0 ENSG00000228105.1 lincRNA LINC01757 1 OTTHUMG00000002707.2 +6765 chr1 HAVANA gene 20272018 20275005 1639.0 + 0 ENSG00000284710.1 lincRNA Z98257.2 2 OTTHUMG00000192300.1 +6766 chr1 HAVANA gene 20294211 20323187 229.0 - 0 ENSG00000226664.1 antisense AL020998.1 2 OTTHUMG00000002836.1 +6767 chr1 HAVANA gene 20290919 20354894 6377.0 + 0 ENSG00000158816.15 protein_coding VWA5B1 1 OTTHUMG00000002835.7 +6768 chr1 HAVANA gene 20412304 20413253 376.0 - 0 ENSG00000226487.1 lincRNA AL139254.1 2 OTTHUMG00000002843.1 overlapping_locus +6769 chr1 HAVANA gene 20360579 20431234 3394.0 - 0 ENSG00000236963.6 lincRNA LINC01141 2 OTTHUMG00000002842.2 overlapping_locus +6770 chr1 HAVANA gene 20476222 20478937 1340.0 + 0 ENSG00000284641.1 lincRNA AL139254.2 2 OTTHUMG00000192301.1 +6771 chr1 HAVANA gene 20478779 20480397 674.0 - 0 ENSG00000284743.1 lincRNA AL139254.3 2 OTTHUMG00000192302.1 +6772 chr1 HAVANA gene 20482391 20486220 2615.0 - 0 ENSG00000162545.5 protein_coding CAMK2N1 2 OTTHUMG00000002837.1 +6773 chr1 HAVANA gene 20499448 20508161 2438.0 - 0 ENSG00000090432.6 protein_coding MUL1 2 OTTHUMG00000002838.2 +6774 chr1 HAVANA gene 20525989 20526751 763.0 + 0 ENSG00000215520.3 processed_pseudogene RPS4XP4 1 OTTHUMG00000002839.1 pseudo_consens +6775 chr1 HAVANA gene 20552439 20555010 2572.0 + 0 ENSG00000183114.7 protein_coding FAM43B 2 OTTHUMG00000057491.1 +6776 chr1 HAVANA gene 20588948 20618908 963.0 + 0 ENSG00000158825.5 protein_coding CDA 2 OTTHUMG00000002845.1 +6777 chr1 ENSEMBL gene 20633679 20633788 110.0 + 0 ENSG00000284005.1 miRNA MIR6084 3 +6778 chr1 HAVANA gene 20633455 20651511 4836.0 + 0 ENSG00000158828.7 protein_coding PINK1 2 OTTHUMG00000002841.1 ncRNA_host +6779 chr1 HAVANA gene 20642657 20652193 4443.0 - 0 ENSG00000117242.7 antisense PINK1-AS 2 OTTHUMG00000002840.1 overlapping_locus +6780 chr1 HAVANA gene 20651767 20661544 2721.0 - 0 ENSG00000244038.9 protein_coding DDOST 1 OTTHUMG00000002844.6 overlapping_locus +6781 chr1 HAVANA gene 20692734 20694013 479.0 - 0 ENSG00000235432.1 unprocessed_pseudogene AL663074.2 2 OTTHUMG00000129003.1 overlapping_locus +6782 chr1 HAVANA gene 20664014 20718017 4470.0 - 0 ENSG00000117245.12 protein_coding KIF17 2 OTTHUMG00000002863.3 overlapping_locus +6783 chr1 HAVANA gene 20719732 20732837 4423.0 - 0 ENSG00000189410.11 protein_coding SH2D5 2 OTTHUMG00000002620.3 +6784 chr1 HAVANA gene 20732880 20733952 299.0 + 0 ENSG00000233069.1 antisense AL663074.1 2 OTTHUMG00000002621.1 +6785 chr1 HAVANA gene 20742661 20787323 7442.0 - 0 ENSG00000127483.17 protein_coding HP1BP3 2 OTTHUMG00000002622.7 +6786 chr1 ENSEMBL gene 20841241 20841302 62.0 + 0 ENSG00000251914.1 snRNA RNU7-200P 3 +6787 chr1 ENSEMBL gene 20988314 20988432 119.0 - 0 ENSG00000221808.1 miRNA MIR1256 3 +6788 chr1 HAVANA gene 21003550 21003934 385.0 - 0 ENSG00000233072.1 processed_pseudogene RPS15AP6 1 OTTHUMG00000002778.1 pseudo_consens,overlapping_locus +6789 chr1 HAVANA gene 21073639 21073753 115.0 - 0 ENSG00000236073.2 processed_pseudogene AL627311.1 1 OTTHUMG00000002779.2 pseudo_consens,overlapping_locus +6790 chr1 HAVANA gene 21161475 21162081 296.0 + 0 ENSG00000235112.1 processed_pseudogene HSPE1P27 2 OTTHUMG00000002776.1 +6791 chr1 HAVANA gene 20806292 21176888 9596.0 - 0 ENSG00000075151.20 protein_coding EIF4G3 1 OTTHUMG00000002624.7 ncRNA_host,overlapping_locus +6792 chr1 HAVANA gene 21266082 21267251 723.0 + 0 ENSG00000236936.1 antisense AL031005.1 2 OTTHUMG00000002623.1 +6793 chr1 HAVANA gene 21293290 21299774 2479.0 + 0 ENSG00000231105.1 antisense AL031728.1 2 OTTHUMG00000002777.1 +6794 chr1 HAVANA gene 21217247 21345572 7333.0 - 0 ENSG00000117298.15 protein_coding ECE1 1 OTTHUMG00000002625.5 +6795 chr1 HAVANA gene 21397987 21398362 376.0 + 0 ENSG00000236216.5 processed_pseudogene PPP1R11P1 1 OTTHUMG00000002940.1 pseudo_consens +6796 chr1 HAVANA gene 21411460 21413293 649.0 - 0 ENSG00000228823.1 unprocessed_pseudogene AL592309.1 2 OTTHUMG00000057493.1 +6797 chr1 HAVANA gene 21415898 21417492 761.0 + 0 ENSG00000236009.1 lincRNA AL592309.2 2 OTTHUMG00000002945.1 +6798 chr1 HAVANA gene 21424625 21427967 661.0 - 0 ENSG00000227001.3 unprocessed_pseudogene NBPF2P 2 OTTHUMG00000002941.1 +6799 chr1 HAVANA gene 21428303 21429536 1234.0 + 0 ENSG00000187952.9 processed_pseudogene HS6ST1P1 2 OTTHUMG00000002942.3 +6800 chr1 HAVANA gene 21434318 21437558 830.0 + 0 ENSG00000186543.7 unprocessed_pseudogene CROCCP5 2 OTTHUMG00000002943.1 +6801 chr1 HAVANA gene 21459756 21460082 327.0 - 0 ENSG00000176378.8 processed_pseudogene PFN1P10 1 OTTHUMG00000002948.2 pseudo_consens +6802 chr1 HAVANA gene 21440128 21485005 6812.0 + 0 ENSG00000142794.18 protein_coding NBPF3 2 OTTHUMG00000002944.7 +6803 chr1 HAVANA gene 21509372 21578412 3007.0 + 0 ENSG00000162551.13 protein_coding ALPL 2 OTTHUMG00000002949.2 +6804 chr1 HAVANA gene 21586472 21591187 821.0 + 0 ENSG00000233431.1 antisense LINC02596 2 OTTHUMG00000037843.1 +6805 chr1 HAVANA gene 21596215 21669363 5755.0 - 0 ENSG00000076864.19 protein_coding RAP1GAP 1 OTTHUMG00000007513.12 +6806 chr1 HAVANA gene 21768269 21768575 307.0 + 0 ENSG00000231978.2 processed_pseudogene AL590103.1 1 OTTHUMG00000007797.2 pseudo_consens +6807 chr1 HAVANA gene 21678298 21783606 9497.0 - 0 ENSG00000090686.15 protein_coding USP48 1 OTTHUMG00000007798.4 +6808 chr1 HAVANA gene 21812265 21825221 4490.0 + 0 ENSG00000187942.11 protein_coding LDLRAD2 2 OTTHUMG00000002675.1 +6809 chr1 HAVANA gene 21908098 21908580 483.0 + 0 ENSG00000232037.3 processed_pseudogene AL590556.1 1 OTTHUMG00000002673.1 pseudo_consens +6810 chr1 HAVANA gene 21822245 21937297 17684.0 - 0 ENSG00000142798.19 protein_coding HSPG2 2 OTTHUMG00000002674.10 +6811 chr1 HAVANA gene 21950679 21956871 1162.0 - 0 ENSG00000283234.1 transcribed_unitary_pseudogene AL590556.2 2 OTTHUMG00000191741.1 +6812 chr1 ENSEMBL gene 21987481 21987777 297.0 + 0 ENSG00000273610.1 misc_RNA RN7SL386P 3 +6813 chr1 ENSEMBL gene 21987816 21987919 104.0 + 0 ENSG00000201919.1 snRNA RNU6-1022P 3 +6814 chr1 HAVANA gene 21977021 21998642 1541.0 + 0 ENSG00000219073.7 protein_coding CELA3B 2 OTTHUMG00000002758.4 ncRNA_host,overlapping_locus +6815 chr1 ENSEMBL gene 22010650 22010946 297.0 + 0 ENSG00000278124.1 misc_RNA RN7SL186P 3 +6816 chr1 ENSEMBL gene 22010985 22011088 104.0 + 0 ENSG00000201273.1 snRNA RNU6-776P 3 +6817 chr1 HAVANA gene 22001656 22012539 1224.0 + 0 ENSG00000142789.19 protein_coding CELA3A 2 OTTHUMG00000002755.3 ncRNA_host +6818 chr1 HAVANA gene 22023990 22026048 1126.0 - 0 ENSG00000228397.2 lincRNA LINC01635 2 OTTHUMG00000002754.2 +6819 chr1 HAVANA gene 21983606 22030617 1611.0 + 0 ENSG00000285959.1 processed_transcript AL590556.3 2 OTTHUMG00000193407.1 ncRNA_host,overlapping_locus +6820 chr1 HAVANA gene 22030527 22030748 222.0 + 0 ENSG00000285794.1 transcribed_processed_pseudogene AL031281.4 2 OTTHUMG00000002757.4 overlapping_locus +6821 chr1 HAVANA gene 22024558 22031223 3764.0 + 0 ENSG00000218510.8 processed_transcript LINC00339 2 OTTHUMG00000193408.1 overlapping_locus +6822 chr1 HAVANA gene 22028317 22052927 2574.0 - 0 ENSG00000285752.1 lincRNA AL031281.3 2 OTTHUMG00000193410.1 +6823 chr1 HAVANA gene 22059197 22064199 692.0 + 0 ENSG00000230068.2 sense_intronic CDC42-IT1 2 OTTHUMG00000002890.2 overlapping_locus +6824 chr1 HAVANA gene 22068340 22068827 488.0 - 0 ENSG00000271428.1 processed_pseudogene AL031281.1 1 OTTHUMG00000184273.1 pseudo_consens +6825 chr1 HAVANA gene 22052627 22092946 3598.0 + 0 ENSG00000070831.15 protein_coding CDC42 2 OTTHUMG00000002753.6 overlapping_locus +6826 chr1 HAVANA gene 22025511 22101360 10598.0 + 0 ENSG00000285721.1 protein_coding AL031281.2 2 OTTHUMG00000193409.1 +6827 chr1 HAVANA gene 22117305 22143969 4527.0 - 0 ENSG00000162552.14 protein_coding WNT4 2 OTTHUMG00000002894.3 +6828 chr1 HAVANA gene 22142850 22157401 811.0 + 0 ENSG00000285873.1 bidirectional_promoter_lncRNA AL445253.1 2 OTTHUMG00000193411.1 +6829 chr1 ENSEMBL gene 22266239 22266300 62.0 + 0 ENSG00000266564.1 miRNA MIR4418 3 +6830 chr1 HAVANA gene 22322840 22323331 492.0 - 0 ENSG00000234397.3 processed_pseudogene PPIAP34 1 OTTHUMG00000002895.1 pseudo_consens +6831 chr1 HAVANA gene 22364630 22366482 1853.0 - 0 ENSG00000279625.1 TEC AL591122.1 2 OTTHUMG00000175744.1 +6832 chr1 HAVANA gene 22517474 22519708 273.0 + 0 ENSG00000237200.1 sense_intronic ZBTB40-IT1 2 OTTHUMG00000040025.1 overlapping_locus +6833 chr1 HAVANA gene 22428838 22531157 9169.0 + 0 ENSG00000184677.17 protein_coding ZBTB40 2 OTTHUMG00000002897.3 overlapping_locus +6834 chr1 HAVANA gene 22563564 22603594 5358.0 + 0 ENSG00000070886.11 protein_coding EPHA8 2 OTTHUMG00000002892.1 +6835 chr1 ENSEMBL gene 22633258 22633366 109.0 - 0 ENSG00000276835.2 miRNA MIR6127 3 +6836 chr1 HAVANA gene 22636506 22639608 1272.0 + 0 ENSG00000173372.16 protein_coding C1QA 2 OTTHUMG00000002893.4 +6837 chr1 HAVANA gene 22643630 22648110 1335.0 + 0 ENSG00000159189.11 protein_coding C1QC 2 OTTHUMG00000002891.2 +6838 chr1 HAVANA gene 22652762 22661538 1601.0 + 0 ENSG00000173369.15 protein_coding C1QB 2 OTTHUMG00000002896.4 +6839 chr1 ENSEMBL gene 22719517 22719598 82.0 + 0 ENSG00000265422.1 miRNA MIR4684 3 +6840 chr1 HAVANA gene 22835713 22836849 480.0 - 0 ENSG00000225952.1 antisense AL512444.1 2 OTTHUMG00000002880.1 +6841 chr1 ENSEMBL gene 22863159 22863226 68.0 - 0 ENSG00000264014.1 miRNA MIR4253 3 +6842 chr1 HAVANA gene 22710839 22921500 12516.0 + 0 ENSG00000133216.16 protein_coding EPHB2 2 OTTHUMG00000002881.4 ncRNA_host +6843 chr1 HAVANA gene 22953043 22965338 1641.0 - 0 ENSG00000215906.8 protein_coding LACTBL1 1 OTTHUMG00000003228.5 +6844 chr1 HAVANA gene 23010834 23015850 658.0 - 0 ENSG00000227868.5 protein_coding TEX46 1 OTTHUMG00000003226.3 +6845 chr1 ENSEMBL gene 23044305 23044372 68.0 + 0 ENSG00000263793.1 miRNA MIR3115 3 +6846 chr1 ENSEMBL gene 23057858 23057934 77.0 - 0 ENSG00000266802.1 miRNA MIR4419A 3 +6847 chr1 HAVANA gene 23019443 23083689 5440.0 + 0 ENSG00000004487.16 protein_coding KDM1A 1 OTTHUMG00000003220.7 ncRNA_host +6848 chr1 HAVANA gene 23020147 23088058 666.0 - 0 ENSG00000240553.1 antisense AL031428.1 2 OTTHUMG00000003222.1 ncRNA_host,overlapping_locus +6849 chr1 HAVANA gene 23140325 23141142 818.0 + 0 ENSG00000229010.1 processed_pseudogene AL161672.1 2 OTTHUMG00000154765.1 +6850 chr1 ENSEMBL gene 23162704 23162810 107.0 + 0 ENSG00000206935.1 snRNA RNU6-514P 3 +6851 chr1 ENSEMBL gene 23163953 23164053 101.0 + 0 ENSG00000252578.1 snRNA RNU6-135P 3 +6852 chr1 HAVANA gene 23084023 23177808 9658.0 - 0 ENSG00000169641.13 protein_coding LUZP1 2 OTTHUMG00000003227.5 overlapping_locus +6853 chr1 HAVANA gene 23191895 23194729 2835.0 - 0 ENSG00000179546.4 protein_coding HTR1D 2 OTTHUMG00000003235.1 retrogene +6854 chr1 HAVANA gene 23244765 23245224 460.0 + 0 ENSG00000215381.3 processed_pseudogene AL109936.1 1 OTTHUMG00000003221.1 pseudo_consens +6855 chr1 HAVANA gene 23281308 23286752 5445.0 - 0 ENSG00000261326.3 lincRNA LINC01355 2 OTTHUMG00000175761.3 +6856 chr1 HAVANA gene 23297797 23302866 604.0 + 0 ENSG00000284726.1 lincRNA AL109936.6 2 OTTHUMG00000192303.1 +6857 chr1 HAVANA gene 23303771 23344336 8676.0 - 0 ENSG00000125944.19 protein_coding HNRNPR 2 OTTHUMG00000003224.5 +6858 chr1 HAVANA gene 23359448 23369442 4392.0 - 0 ENSG00000125945.14 protein_coding ZNF436 2 OTTHUMG00000003232.2 +6859 chr1 ENSEMBL gene 23370254 23370346 93.0 + 0 ENSG00000201405.1 misc_RNA RF00019 3 +6860 chr1 HAVANA gene 23368997 23371839 2655.0 + 0 ENSG00000249087.6 antisense ZNF436-AS1 1 OTTHUMG00000003225.2 ncRNA_host +6861 chr1 HAVANA gene 23378380 23379029 650.0 - 0 ENSG00000271420.1 lincRNA AL109936.2 2 OTTHUMG00000185287.1 +6862 chr1 HAVANA gene 23410832 23412146 426.0 + 0 ENSG00000232482.2 processed_pseudogene AL357134.1 1 OTTHUMG00000003230.2 pseudo_consens +6863 chr1 HAVANA gene 23381061 23424740 3515.0 - 0 ENSG00000204219.10 protein_coding TCEA3 2 OTTHUMG00000003233.5 +6864 chr1 HAVANA gene 23428563 23484568 4988.0 - 0 ENSG00000088280.18 protein_coding ASAP3 1 OTTHUMG00000003234.7 +6865 chr1 HAVANA gene 23506430 23531220 5457.0 - 0 ENSG00000007968.6 protein_coding E2F2 2 OTTHUMG00000003223.1 +6866 chr1 HAVANA gene 23549139 23550915 456.0 - 0 ENSG00000235052.1 lincRNA AL021154.1 1 OTTHUMG00000037485.1 +6867 chr1 HAVANA gene 23557918 23559794 1797.0 - 0 ENSG00000117318.8 protein_coding ID3 2 OTTHUMG00000003229.2 +6868 chr1 HAVANA gene 23576436 23593621 1322.0 - 0 ENSG00000285802.1 lincRNA AL450043.1 2 OTTHUMG00000193085.1 +6869 chr1 HAVANA gene 23581495 23640568 2142.0 + 0 ENSG00000197880.8 lincRNA MDS2 2 OTTHUMG00000002927.1 +6870 chr1 HAVANA gene 23670294 23680259 1186.0 + 0 ENSG00000229239.2 unprocessed_pseudogene AL451000.1 2 OTTHUMG00000002929.2 +6871 chr1 HAVANA gene 23691742 23696835 2659.0 + 0 ENSG00000142676.14 protein_coding RPL11 2 OTTHUMG00000002926.8 +6872 chr1 HAVANA gene 23743155 23762059 5391.0 + 0 ENSG00000011007.12 protein_coding ELOA 2 OTTHUMG00000002957.3 +6873 chr1 HAVANA gene 23760382 23778287 1347.0 - 0 ENSG00000236810.5 antisense ELOA-AS1 2 OTTHUMG00000002959.1 +6874 chr1 HAVANA gene 23778405 23788232 2186.0 + 0 ENSG00000057757.9 protein_coding PITHD1 2 OTTHUMG00000002960.3 +6875 chr1 HAVANA gene 23790970 23795539 2196.0 + 0 ENSG00000011009.10 protein_coding LYPLA2 2 OTTHUMG00000002961.4 +6876 chr1 HAVANA gene 23795599 23800804 3978.0 - 0 ENSG00000117308.14 protein_coding GALE 2 OTTHUMG00000002958.8 +6877 chr1 HAVANA gene 23801885 23838620 5658.0 - 0 ENSG00000117305.14 protein_coding HMGCL 1 OTTHUMG00000002963.4 +6878 chr1 HAVANA gene 23845077 23868294 2047.0 - 0 ENSG00000179163.11 protein_coding FUCA1 2 OTTHUMG00000002965.2 +6879 chr1 HAVANA gene 23901471 23902737 1267.0 - 0 ENSG00000229106.1 processed_pseudogene BTBD6P1 1 OTTHUMG00000013894.1 pseudo_consens,overlapping_locus +6880 chr1 HAVANA gene 23907111 23907885 210.0 + 0 ENSG00000232557.3 antisense AL590609.3 2 OTTHUMG00000013895.3 +6881 chr1 HAVANA gene 23870526 23913362 5254.0 - 0 ENSG00000188822.7 protein_coding CNR2 2 OTTHUMG00000013892.1 overlapping_locus +6882 chr1 ENSEMBL gene 23929070 23929147 78.0 + 0 ENSG00000264926.1 miRNA MIR378F 3 +6883 chr1 HAVANA gene 23949016 23949383 368.0 - 0 ENSG00000230228.2 processed_pseudogene AL590609.2 1 OTTHUMG00000013896.2 pseudo_consens +6884 chr1 HAVANA gene 23956839 23963462 2779.0 + 0 ENSG00000189266.12 protein_coding PNRC2 2 OTTHUMG00000013891.6 +6885 chr1 HAVANA gene 23964804 23980927 10277.0 - 0 ENSG00000188529.14 protein_coding SRSF10 2 OTTHUMG00000013893.4 +6886 chr1 HAVANA gene 24007881 24008519 328.0 - 0 ENSG00000215905.4 processed_pseudogene AL590609.1 1 OTTHUMG00000013926.2 pseudo_consens +6887 chr1 HAVANA gene 24066774 24083565 461.0 + 0 ENSG00000230703.1 antisense AL591178.2 2 OTTHUMG00000003037.1 overlapping_locus +6888 chr1 HAVANA gene 24040835 24086799 454.0 + 0 ENSG00000225315.2 antisense AL591178.1 2 OTTHUMG00000003034.2 overlapping_locus +6889 chr1 HAVANA gene 24056035 24112175 9254.0 - 0 ENSG00000142661.18 protein_coding MYOM3 2 OTTHUMG00000002969.3 +6890 chr1 HAVANA gene 24119771 24143121 2798.0 - 0 ENSG00000142677.3 protein_coding IL22RA1 2 OTTHUMG00000003041.1 +6891 chr1 HAVANA gene 24154157 24187959 4923.0 - 0 ENSG00000185436.11 protein_coding IFNLR1 2 OTTHUMG00000003036.2 +6892 chr1 HAVANA gene 24200240 24211693 1849.0 + 0 ENSG00000230023.2 lincRNA AL590683.1 2 OTTHUMG00000003038.2 +6893 chr1 HAVANA gene 24307556 24321901 856.0 - 0 ENSG00000232298.2 antisense AL138902.1 2 OTTHUMG00000003039.1 +6894 chr1 HAVANA gene 24319322 24364482 3940.0 + 0 ENSG00000158055.15 protein_coding GRHL3 2 OTTHUMG00000003040.6 +6895 chr1 HAVANA gene 24356999 24416934 8511.0 - 0 ENSG00000001460.17 protein_coding STPG1 2 OTTHUMG00000003297.2 +6896 chr1 HAVANA gene 24415794 24472976 9404.0 + 0 ENSG00000001461.16 protein_coding NIPAL3 2 OTTHUMG00000003299.3 +6897 chr1 HAVANA gene 24502351 24541040 7077.0 + 0 ENSG00000117602.11 protein_coding RCAN3 2 OTTHUMG00000003298.7 +6898 chr1 HAVANA gene 24538802 24556024 1445.0 - 0 ENSG00000264443.1 lincRNA AL445686.2 2 OTTHUMG00000179435.1 +6899 chr1 HAVANA gene 24563627 24563974 348.0 + 0 ENSG00000227312.2 processed_pseudogene AL445686.1 1 OTTHUMG00000003318.2 pseudo_consens,overlapping_locus +6900 chr1 HAVANA gene 24556111 24609328 4122.0 + 0 ENSG00000184454.6 protein_coding NCMAP 2 OTTHUMG00000003317.2 overlapping_locus +6901 chr1 ENSEMBL gene 24625411 24625513 103.0 - 0 ENSG00000239106.1 misc_RNA RF00019 3 +6902 chr1 HAVANA gene 24631716 24673267 8168.0 + 0 ENSG00000133226.16 protein_coding SRRM1 2 OTTHUMG00000003320.4 +6903 chr1 HAVANA gene 24704894 24717596 886.0 + 0 ENSG00000284699.1 lincRNA AL445648.1 2 OTTHUMG00000192304.1 +6904 chr1 ENSEMBL gene 24777873 24777979 107.0 - 0 ENSG00000238482.1 snRNA RNU6-1208P 3 +6905 chr1 HAVANA gene 24745357 24844324 4495.0 + 0 ENSG00000169504.14 protein_coding CLIC4 2 OTTHUMG00000003327.4 +6906 chr1 ENSEMBL gene 24919345 24919416 72.0 - 0 ENSG00000278034.1 miRNA MIR6731 3 +6907 chr1 HAVANA gene 24961345 24963097 820.0 + 0 ENSG00000229162.1 antisense AL445471.1 1 OTTHUMG00000003322.1 +6908 chr1 HAVANA gene 24899511 24965121 4523.0 - 0 ENSG00000020633.18 protein_coding RUNX3 2 OTTHUMG00000003316.1 ncRNA_host +6909 chr1 HAVANA gene 24968423 24970865 2443.0 - 0 ENSG00000261025.1 lincRNA AL445471.2 2 OTTHUMG00000175776.1 +6910 chr1 ENSEMBL gene 25023503 25023586 84.0 + 0 ENSG00000264371.1 miRNA MIR4425 3 +6911 chr1 HAVANA gene 25041136 25047404 1431.0 + 0 ENSG00000285823.1 lincRNA AL050344.2 2 OTTHUMG00000193197.2 +6912 chr1 HAVANA gene 25043707 25113120 863.0 - 0 ENSG00000233755.1 lincRNA AL050344.1 1 OTTHUMG00000003326.1 +6913 chr1 HAVANA gene 25125053 25125454 402.0 - 0 ENSG00000233419.3 processed_pseudogene AL121994.1 1 OTTHUMG00000003319.1 pseudo_consens +6914 chr1 HAVANA gene 25208139 25209437 988.0 + 0 ENSG00000231953.2 antisense AL031432.1 1 OTTHUMG00000003323.2 +6915 chr1 HAVANA gene 25222679 25232502 3370.0 - 0 ENSG00000117614.9 protein_coding SYF2 2 OTTHUMG00000043610.1 +6916 chr1 HAVANA gene 25232586 25234775 2190.0 + 0 ENSG00000284602.1 bidirectional_promoter_lncRNA AL031432.4 2 OTTHUMG00000192305.1 +6917 chr1 HAVANA gene 25239494 25240253 760.0 + 0 ENSG00000284657.1 lincRNA AL031432.5 2 OTTHUMG00000192306.1 +6918 chr1 HAVANA gene 25247837 25248321 485.0 + 0 ENSG00000272432.1 lincRNA AL031432.3 2 OTTHUMG00000185697.1 +6919 chr1 HAVANA gene 25266102 25267136 459.0 - 0 ENSG00000261349.1 unprocessed_pseudogene AL031432.2 2 OTTHUMG00000173028.1 overlapping_locus +6920 chr1 HAVANA gene 25294164 25294643 480.0 - 0 ENSG00000224183.1 processed_pseudogene SDHDP6 2 OTTHUMG00000003481.1 overlapping_locus +6921 chr1 HAVANA gene 25272393 25330445 3313.0 + 0 ENSG00000187010.20 protein_coding RHD 2 OTTHUMG00000003476.9 +6922 chr1 HAVANA gene 25336429 25337465 459.0 - 0 ENSG00000259984.1 unprocessed_pseudogene AL928711.1 2 OTTHUMG00000173029.1 overlapping_locus +6923 chr1 HAVANA gene 25242237 25338213 6804.0 - 0 ENSG00000117616.17 protein_coding RSRP1 2 OTTHUMG00000043611.6 overlapping_locus +6924 chr1 HAVANA gene 25337917 25362361 3410.0 + 0 ENSG00000183726.10 protein_coding TMEM50A 2 OTTHUMG00000007651.1 +6925 chr1 HAVANA gene 25398721 25399198 478.0 + 0 ENSG00000238084.4 processed_pseudogene AL031284.1 2 OTTHUMG00000003482.3 +6926 chr1 HAVANA gene 25362249 25430192 2433.0 - 0 ENSG00000188672.18 protein_coding RHCE 1 OTTHUMG00000007650.5 +6927 chr1 HAVANA gene 25430858 25500209 3979.0 + 0 ENSG00000204178.10 protein_coding MACO1 2 OTTHUMG00000003473.5 +6928 chr1 HAVANA gene 25543580 25568886 5397.0 + 0 ENSG00000157978.11 protein_coding LDLRAP1 2 OTTHUMG00000007386.5 +6929 chr1 HAVANA gene 25581478 25590356 483.0 + 0 ENSG00000225643.1 lincRNA AL606491.1 1 OTTHUMG00000004419.1 +6930 chr1 HAVANA gene 25644544 25659111 2224.0 - 0 ENSG00000233478.1 antisense AL031280.1 2 OTTHUMG00000004418.1 +6931 chr1 HAVANA gene 25617468 25786207 9026.0 + 0 ENSG00000117643.14 protein_coding MAN1C1 2 OTTHUMG00000004417.3 +6932 chr1 HAVANA gene 25800176 25818224 4424.0 + 0 ENSG00000162430.16 protein_coding SELENON 2 OTTHUMG00000007375.4 overlapping_locus +6933 chr1 HAVANA gene 25816749 25820797 2793.0 - 0 ENSG00000228172.5 antisense AL020996.1 2 OTTHUMG00000007376.2 +6934 chr1 HAVANA gene 25811470 25823744 792.0 + 0 ENSG00000255054.3 protein_coding AL020996.2 2 OTTHUMG00000167136.2 overlapping_locus +6935 chr1 HAVANA gene 25831913 25832134 222.0 - 0 ENSG00000272478.1 antisense AL020996.3 2 OTTHUMG00000185700.1 +6936 chr1 HAVANA gene 25818640 25832942 5817.0 + 0 ENSG00000117640.17 protein_coding MTFR1L 1 OTTHUMG00000007377.6 overlapping_locus +6937 chr1 HAVANA gene 25831913 25859458 2408.0 - 0 ENSG00000127423.10 protein_coding AUNIP 2 OTTHUMG00000007372.2 +6938 chr1 HAVANA gene 25859613 25863420 849.0 + 0 ENSG00000236528.1 antisense AL033528.2 2 OTTHUMG00000007374.1 +6939 chr1 HAVANA gene 25861210 25871253 3297.0 - 0 ENSG00000182749.5 protein_coding PAQR7 2 OTTHUMG00000007373.1 retrogene +6940 chr1 ENSEMBL gene 25877496 25877605 110.0 + 0 ENSG00000207302.1 misc_RNA RF00019 3 +6941 chr1 HAVANA gene 25887360 25887610 251.0 + 0 ENSG00000229786.1 processed_pseudogene SNRPFP2 1 OTTHUMG00000156992.1 pseudo_consens +6942 chr1 HAVANA gene 25888970 25889109 140.0 + 0 ENSG00000223624.1 processed_pseudogene AL033528.1 1 OTTHUMG00000007388.2 pseudo_consens +6943 chr1 ENSEMBL gene 25906362 25906454 93.0 - 0 ENSG00000283938.1 miRNA MIR3917 3 +6944 chr1 HAVANA gene 25884181 25906991 6261.0 - 0 ENSG00000117632.22 protein_coding STMN1 2 OTTHUMG00000007389.3 ncRNA_host +6945 chr1 ENSEMBL gene 25964197 25964300 104.0 + 0 ENSG00000207237.1 snRNA RNU6-110P 3 +6946 chr1 HAVANA gene 25959767 25998157 3835.0 - 0 ENSG00000158006.13 protein_coding PAFAH2 2 OTTHUMG00000007437.3 +6947 chr1 ENSEMBL gene 26006006 26006130 125.0 + 0 ENSG00000252190.1 scaRNA RF00492 3 +6948 chr1 ENSEMBL gene 26006216 26006299 84.0 + 0 ENSG00000252691.1 scaRNA RF00283 3 +6949 chr1 HAVANA gene 26019884 26036464 4537.0 + 0 ENSG00000158008.9 protein_coding EXTL1 2 OTTHUMG00000007509.1 +6950 chr1 HAVANA gene 26037252 26046133 3498.0 - 0 ENSG00000158014.14 protein_coding SLC30A2 2 OTTHUMG00000007508.3 +6951 chr1 HAVANA gene 26046665 26049099 941.0 + 0 ENSG00000284309.1 bidirectional_promoter_lncRNA AL391650.2 2 OTTHUMG00000191964.1 +6952 chr1 HAVANA gene 26051304 26068436 2573.0 - 0 ENSG00000158022.6 protein_coding TRIM63 2 OTTHUMG00000007510.1 +6953 chr1 HAVANA gene 26111165 26125543 4535.0 + 0 ENSG00000175087.9 protein_coding PDIK1L 2 OTTHUMG00000007511.2 +6954 chr1 HAVANA gene 26159020 26163962 2858.0 + 0 ENSG00000197245.5 protein_coding FAM110D 2 OTTHUMG00000007537.2 +6955 chr1 HAVANA gene 26164161 26168581 761.0 - 0 ENSG00000282872.1 protein_coding C1orf232 2 OTTHUMG00000191595.1 +6956 chr1 HAVANA gene 26169871 26170873 769.0 + 0 ENSG00000142684.8 protein_coding ZNF593 2 OTTHUMG00000007538.3 +6957 chr1 HAVANA gene 26169516 26171831 2073.0 - 0 ENSG00000236782.7 protein_coding AL391650.1 2 OTTHUMG00000007539.4 +6958 chr1 HAVANA gene 26177403 26189886 4043.0 + 0 ENSG00000142675.17 protein_coding CNKSR1 2 OTTHUMG00000007541.4 +6959 chr1 HAVANA gene 26190561 26202968 2030.0 + 0 ENSG00000188782.8 protein_coding CATSPER4 2 OTTHUMG00000003383.4 +6960 chr1 HAVANA gene 26218581 26220476 899.0 - 0 ENSG00000278572.1 unprocessed_pseudogene AL355877.3 2 OTTHUMG00000187522.1 +6961 chr1 HAVANA gene 26209741 26229840 3191.0 + 0 ENSG00000236155.6 transcribed_unprocessed_pseudogene AL355877.1 1 OTTHUMG00000003384.3 +6962 chr1 HAVANA gene 26263041 26263398 358.0 - 0 ENSG00000270733.1 processed_pseudogene AL355877.2 1 OTTHUMG00000184274.1 pseudo_consens +6963 chr1 HAVANA gene 26234200 26278808 5145.0 + 0 ENSG00000130695.15 protein_coding CEP85 2 OTTHUMG00000003380.6 +6964 chr1 HAVANA gene 26279176 26281522 1786.0 + 0 ENSG00000142669.14 protein_coding SH3BGRL3 2 OTTHUMG00000003381.2 +6965 chr1 HAVANA gene 26281328 26318363 4704.0 - 0 ENSG00000158062.20 protein_coding UBXN11 2 OTTHUMG00000003382.13 +6966 chr1 HAVANA gene 26317957 26320523 935.0 + 0 ENSG00000169442.8 protein_coding CD52 2 OTTHUMG00000003491.2 +6967 chr1 HAVANA gene 26326688 26327033 346.0 + 0 ENSG00000225854.2 processed_pseudogene AL451139.1 1 OTTHUMG00000156993.2 pseudo_consens +6968 chr1 HAVANA gene 26321698 26360080 6895.0 - 0 ENSG00000176092.15 protein_coding CRYBG2 1 OTTHUMG00000003490.10 +6969 chr1 HAVANA gene 26361634 26374522 2379.0 - 0 ENSG00000176083.17 protein_coding ZNF683 1 OTTHUMG00000003521.5 +6970 chr1 HAVANA gene 26410778 26429722 4008.0 + 0 ENSG00000131914.10 protein_coding LIN28A 2 OTTHUMG00000003550.2 +6971 chr1 HAVANA gene 26454653 26455187 535.0 - 0 ENSG00000223583.1 processed_pseudogene AL513365.1 1 OTTHUMG00000003553.1 pseudo_consens +6972 chr1 HAVANA gene 26462756 26467282 529.0 - 0 ENSG00000225891.1 antisense AL513365.2 2 OTTHUMG00000003552.1 +6973 chr1 HAVANA gene 26432282 26471294 5596.0 + 0 ENSG00000117682.16 protein_coding DHDDS 1 OTTHUMG00000003554.7 +6974 chr1 HAVANA gene 26472450 26475972 2509.0 + 0 ENSG00000198830.10 protein_coding HMGN2 2 OTTHUMG00000003555.3 +6975 chr1 HAVANA gene 26519354 26520250 897.0 - 0 ENSG00000224129.1 processed_pseudogene DPPA2P2 1 OTTHUMG00000003551.1 pseudo_consens +6976 chr1 ENSEMBL gene 26554542 26554593 52.0 + 0 ENSG00000238705.1 miRNA MIR1976 3 +6977 chr1 HAVANA gene 26529761 26575030 5884.0 + 0 ENSG00000117676.13 protein_coding RPS6KA1 2 OTTHUMG00000004003.5 ncRNA_host +6978 chr1 ENSEMBL gene 26593243 26593546 304.0 - 0 ENSG00000243905.3 misc_RNA RN7SL679P 3 +6979 chr1 ENSEMBL gene 26593940 26594041 102.0 - 0 ENSG00000252802.1 misc_RNA RF00019 3 +6980 chr1 ENSEMBL gene 26602369 26602432 64.0 - 0 ENSG00000252429.2 snRNA RNU7-29P 3 +6981 chr1 HAVANA gene 26640377 26640614 238.0 - 0 ENSG00000229247.2 processed_pseudogene AL627313.1 1 OTTHUMG00000057505.2 pseudo_consens +6982 chr1 ENSEMBL gene 26642286 26642389 104.0 - 0 ENSG00000238316.1 snoRNA RF01210 3 +6983 chr1 HAVANA gene 26647447 26647681 235.0 + 0 ENSG00000235069.2 processed_pseudogene AL627082.1 1 OTTHUMG00000057507.2 pseudo_consens +6984 chr1 HAVANA gene 26692132 26694131 2000.0 - 0 ENSG00000260063.1 antisense AL512408.1 2 OTTHUMG00000175777.1 +6985 chr1 HAVANA gene 26693236 26782110 15928.0 + 0 ENSG00000117713.19 protein_coding ARID1A 1 OTTHUMG00000004004.12 +6986 chr1 HAVANA gene 26787472 26798398 3382.0 + 0 ENSG00000060642.10 protein_coding PIGV 2 OTTHUMG00000004005.6 +6987 chr1 ENSEMBL gene 26814822 26815112 291.0 + 0 ENSG00000241188.3 misc_RNA RN7SL165P 3 +6988 chr1 HAVANA gene 26826710 26857602 5436.0 + 0 ENSG00000204160.11 protein_coding ZDHHC18 1 OTTHUMG00000004092.5 +6989 chr1 HAVANA gene 26863138 26864457 1320.0 + 0 ENSG00000175793.11 protein_coding SFN 2 OTTHUMG00000004093.1 retrogene +6990 chr1 HAVANA gene 26876133 26878245 306.0 + 0 ENSG00000226698.1 antisense AL034380.1 2 OTTHUMG00000004228.1 +6991 chr1 HAVANA gene 26876133 26890297 4979.0 - 0 ENSG00000142751.14 protein_coding GPN2 2 OTTHUMG00000004227.4 +6992 chr1 HAVANA gene 26890488 26900466 2225.0 - 0 ENSG00000198746.12 protein_coding GPATCH3 2 OTTHUMG00000004229.3 +6993 chr1 HAVANA gene 26911489 26913966 1156.0 - 0 ENSG00000131910.4 protein_coding NR0B2 2 OTTHUMG00000004231.1 +6994 chr1 HAVANA gene 26900238 26946862 2856.0 + 0 ENSG00000090273.13 protein_coding NUDC 1 OTTHUMG00000004226.11 +6995 chr1 HAVANA gene 26949562 26960406 1793.0 - 0 ENSG00000175707.8 protein_coding KDF1 2 OTTHUMG00000004272.1 +6996 chr1 HAVANA gene 26980165 26980975 497.0 + 0 ENSG00000172746.6 unprocessed_pseudogene RPL12P13 1 OTTHUMG00000004274.1 pseudo_consens +6997 chr1 HAVANA gene 26983628 26984024 397.0 + 0 ENSG00000224064.1 processed_pseudogene AL356390.1 1 OTTHUMG00000004275.1 pseudo_consens +6998 chr1 HAVANA gene 26985897 26986340 444.0 - 0 ENSG00000225294.1 processed_pseudogene OSTCP2 1 OTTHUMG00000004276.1 pseudo_consens +6999 chr1 HAVANA gene 26993707 27000898 1976.0 + 0 ENSG00000253368.3 protein_coding TRNP1 2 OTTHUMG00000004277.4 +7000 chr1 HAVANA gene 27005020 27012836 2368.0 - 0 ENSG00000158246.7 protein_coding TENT5B 2 OTTHUMG00000004278.3 +7001 chr1 HAVANA gene 27098815 27166981 5974.0 - 0 ENSG00000090020.10 protein_coding SLC9A1 2 OTTHUMG00000004271.4 +7002 chr1 HAVANA gene 27176751 27177277 527.0 + 0 ENSG00000229985.2 processed_pseudogene AL590640.2 1 OTTHUMG00000005769.1 pseudo_consens +7003 chr1 HAVANA gene 27200834 27201473 640.0 - 0 ENSG00000214973.3 processed_pseudogene CHCHD3P3 1 OTTHUMG00000004279.1 pseudo_consens +7004 chr1 HAVANA gene 27206930 27207796 867.0 + 0 ENSG00000225159.1 processed_pseudogene NPM1P39 1 OTTHUMG00000004280.1 pseudo_consens +7005 chr1 HAVANA gene 27211265 27211484 220.0 + 0 ENSG00000225990.2 processed_pseudogene SNRPEP7 1 OTTHUMG00000004281.2 pseudo_consens +7006 chr1 HAVANA gene 27229106 27234352 379.0 - 0 ENSG00000224311.1 antisense AL590640.1 2 OTTHUMG00000004413.2 +7007 chr1 ENSEMBL gene 27255464 27255567 104.0 - 0 ENSG00000252098.1 misc_RNA RF00019 3 +7008 chr1 HAVANA gene 27234516 27308633 6024.0 + 0 ENSG00000142784.15 protein_coding WDTC1 2 OTTHUMG00000004273.6 +7009 chr1 HAVANA gene 27311240 27311838 282.0 + 0 ENSG00000243659.1 processed_pseudogene FO393419.3 1 OTTHUMG00000004409.1 pseudo_consens +7010 chr1 ENSEMBL gene 27325219 27325325 107.0 + 0 ENSG00000206888.1 snRNA RNU6-48P 3 +7011 chr1 HAVANA gene 27325329 27325796 468.0 + 0 ENSG00000241547.1 processed_pseudogene ACTG1P20 1 OTTHUMG00000004411.1 pseudo_consens,overlapping_locus +7012 chr1 HAVANA gene 27322145 27336400 4476.0 + 0 ENSG00000186501.14 protein_coding TMEM222 2 OTTHUMG00000004410.6 ncRNA_host,overlapping_locus +7013 chr1 HAVANA gene 27342020 27353937 5584.0 + 0 ENSG00000142765.17 protein_coding SYTL1 2 OTTHUMG00000005770.11 +7014 chr1 HAVANA gene 27355184 27366892 4951.0 - 0 ENSG00000142733.15 protein_coding MAP3K6 2 OTTHUMG00000004631.7 +7015 chr1 HAVANA gene 27369112 27374824 2167.0 - 0 ENSG00000142748.12 protein_coding FCN3 2 OTTHUMG00000005722.2 +7016 chr1 HAVANA gene 27379176 27383380 2041.0 - 0 ENSG00000174950.10 protein_coding CD164L2 2 OTTHUMG00000003395.4 +7017 chr1 HAVANA gene 27389468 27390145 355.0 + 0 ENSG00000231207.1 processed_pseudogene FO393419.1 2 OTTHUMG00000003396.1 +7018 chr1 HAVANA gene 27392644 27395814 2115.0 + 0 ENSG00000181773.6 protein_coding GPR3 2 OTTHUMG00000003397.2 +7019 chr1 HAVANA gene 27457198 27459582 428.0 + 0 ENSG00000241169.1 lincRNA FO393419.2 2 OTTHUMG00000003394.2 +7020 chr1 HAVANA gene 27404226 27490158 5676.0 - 0 ENSG00000158195.10 protein_coding WASF2 2 OTTHUMG00000003393.3 +7021 chr1 HAVANA gene 27525805 27530561 283.0 + 0 ENSG00000237429.1 antisense BX293535.1 2 OTTHUMG00000003517.1 +7022 chr1 HAVANA gene 27534035 27604431 7157.0 - 0 ENSG00000126705.14 protein_coding AHDC1 2 OTTHUMG00000003398.5 +7023 chr1 HAVANA gene 27612064 27635277 3474.0 - 0 ENSG00000000938.12 protein_coding FGR 2 OTTHUMG00000003516.2 +7024 chr1 HAVANA gene 27649419 27649610 192.0 + 0 ENSG00000235912.1 processed_pseudogene AL031729.1 2 OTTHUMG00000003515.1 +7025 chr1 HAVANA gene 27660328 27662722 441.0 - 0 ENSG00000233975.1 lincRNA LINC02574 2 OTTHUMG00000003519.1 +7026 chr1 HAVANA gene 27666061 27672218 865.0 - 0 ENSG00000126709.14 protein_coding IFI6 2 OTTHUMG00000003518.1 +7027 chr1 ENSEMBL gene 27675603 27675709 107.0 - 0 ENSG00000206767.1 snRNA RNU6-949P 3 +7028 chr1 HAVANA gene 27686810 27687471 662.0 - 0 ENSG00000226662.2 processed_pseudogene CHMP1AP1 1 OTTHUMG00000003514.3 pseudo_consens +7029 chr1 ENSEMBL gene 27693731 27693835 105.0 + 0 ENSG00000207095.1 snRNA RNU6-424P 3 +7030 chr1 HAVANA gene 27669468 27703063 1651.0 + 0 ENSG00000225886.3 antisense AL445490.1 2 OTTHUMG00000042107.2 ncRNA_host +7031 chr1 HAVANA gene 27739091 27739439 349.0 + 0 ENSG00000231344.1 processed_pseudogene AL020997.1 1 OTTHUMG00000003731.1 pseudo_consens,overlapping_locus +7032 chr1 HAVANA gene 27739954 27740629 676.0 + 0 ENSG00000230833.1 processed_pseudogene RPEP3 1 OTTHUMG00000003733.1 pseudo_consens,overlapping_locus +7033 chr1 HAVANA gene 27725979 27763122 4034.0 + 0 ENSG00000009780.15 protein_coding FAM76A 1 OTTHUMG00000003729.4 overlapping_locus +7034 chr1 HAVANA gene 27773858 27774041 184.0 + 0 ENSG00000269971.1 sense_intronic AL020997.2 2 OTTHUMG00000183954.1 overlapping_locus +7035 chr1 HAVANA gene 27819983 27820341 359.0 + 0 ENSG00000270031.1 sense_intronic AL020997.3 2 OTTHUMG00000183955.1 overlapping_locus +7036 chr1 HAVANA gene 27773183 27824452 3846.0 + 0 ENSG00000117758.13 protein_coding STX12 2 OTTHUMG00000003730.2 overlapping_locus +7037 chr1 ENSEMBL gene 27824538 27824643 106.0 + 0 ENSG00000223062.1 snRNA RNU6-1245P 3 +7038 chr1 ENSEMBL gene 27834401 27834566 166.0 + 0 ENSG00000252947.1 scaRNA SCARNA1 3 +7039 chr1 HAVANA gene 27830778 27851676 2819.0 + 0 ENSG00000117751.17 protein_coding PPP1R8 1 OTTHUMG00000003734.4 ncRNA_host +7040 chr1 HAVANA gene 27872543 27886685 4621.0 + 0 ENSG00000130775.15 protein_coding THEMIS2 2 OTTHUMG00000003735.5 +7041 chr1 HAVANA gene 27891524 27914746 2019.0 - 0 ENSG00000117748.9 protein_coding RPA2 2 OTTHUMG00000003915.3 +7042 chr1 HAVANA gene 27934993 27959157 2670.0 + 0 ENSG00000130768.14 protein_coding SMPDL3B 2 OTTHUMG00000003910.3 +7043 chr1 HAVANA gene 27938875 27960193 491.0 - 0 ENSG00000227050.1 antisense AL512288.1 2 OTTHUMG00000003911.1 +7044 chr1 HAVANA gene 27959462 27968096 2743.0 + 0 ENSG00000158156.7 protein_coding XKR8 2 OTTHUMG00000003912.1 +7045 chr1 HAVANA gene 27990158 27990524 367.0 - 0 ENSG00000238231.2 processed_pseudogene AL512288.2 1 OTTHUMG00000003914.2 pseudo_consens,overlapping_locus +7046 chr1 ENSEMBL gene 28031884 28032180 297.0 - 0 ENSG00000240750.3 misc_RNA RN7SL559P 3 +7047 chr1 HAVANA gene 27970344 28088696 6483.0 - 0 ENSG00000158161.15 protein_coding EYA3 2 OTTHUMG00000003916.1 ncRNA_host,overlapping_locus +7048 chr1 HAVANA gene 28095742 28096422 681.0 - 0 ENSG00000228589.3 processed_pseudogene SPCS2P4 2 OTTHUMG00000003917.1 +7049 chr1 HAVANA gene 28109739 28110298 235.0 + 0 ENSG00000228943.1 processed_pseudogene AL137792.2 1 OTTHUMG00000003951.1 pseudo_consens +7050 chr1 HAVANA gene 28120449 28121321 557.0 - 0 ENSG00000214812.3 processed_pseudogene AL137792.1 1 OTTHUMG00000003952.2 pseudo_consens +7051 chr1 ENSEMBL gene 28142737 28142841 105.0 - 0 ENSG00000253005.1 snRNA RNU6-176P 3 +7052 chr1 HAVANA gene 28147166 28193936 4706.0 - 0 ENSG00000169403.11 protein_coding PTAFR 2 OTTHUMG00000003953.1 +7053 chr1 HAVANA gene 28199456 28233025 2888.0 - 0 ENSG00000126698.10 protein_coding DNAJC8 1 OTTHUMG00000003538.3 +7054 chr1 HAVANA gene 28239509 28241453 1945.0 - 0 ENSG00000270605.1 antisense AL353622.1 2 OTTHUMG00000185161.1 +7055 chr1 HAVANA gene 28236109 28246906 2225.0 + 0 ENSG00000130770.17 protein_coding ATP5IF1 1 OTTHUMG00000003533.2 +7056 chr1 HAVANA gene 28247144 28247568 425.0 + 0 ENSG00000271398.1 lincRNA AL353622.2 2 OTTHUMG00000185179.1 +7057 chr1 HAVANA gene 28259527 28282491 3453.0 + 0 ENSG00000130766.4 protein_coding SESN2 2 OTTHUMG00000003532.1 +7058 chr1 HAVANA gene 28329002 28335967 2019.0 + 0 ENSG00000130772.13 protein_coding MED18 2 OTTHUMG00000003537.2 +7059 chr1 ENSEMBL gene 28422555 28422655 101.0 - 0 ENSG00000206779.1 misc_RNA RF00019 3 +7060 chr1 HAVANA gene 28453541 28453934 394.0 + 0 ENSG00000229820.2 processed_pseudogene CR391992.1 1 OTTHUMG00000043619.2 pseudo_consens,overlapping_locus +7061 chr1 ENSEMBL gene 28481362 28481480 119.0 + 0 ENSG00000221216.1 snRNA RNU6ATAC27P 3 +7062 chr1 HAVANA gene 28369582 28500369 7322.0 + 0 ENSG00000204138.12 protein_coding PHACTR4 2 OTTHUMG00000003541.7 ncRNA_host,overlapping_locus +7063 chr1 ENSEMBL gene 28507366 28507571 206.0 + 0 ENSG00000274266.1 snoRNA SNORA73A 3 +7064 chr1 ENSEMBL gene 28508559 28508762 204.0 + 0 ENSG00000200087.1 snoRNA SNORA73B 3 +7065 chr1 HAVANA gene 28505980 28510892 4088.0 + 0 ENSG00000242125.3 processed_transcript SNHG3 2 OTTHUMG00000003657.2 ncRNA_host,overlapping_locus +7066 chr1 HAVANA gene 28526318 28527227 611.0 - 0 ENSG00000231468.2 processed_pseudogene PRDX3P2 1 OTTHUMG00000003652.2 pseudo_consens +7067 chr1 HAVANA gene 28505943 28539300 3888.0 + 0 ENSG00000180198.16 protein_coding RCC1 1 OTTHUMG00000003645.13 ncRNA_host,overlapping_locus +7068 chr1 HAVANA gene 28544460 28546542 2083.0 + 0 ENSG00000279443.1 TEC AL513497.1 2 OTTHUMG00000175791.1 +7069 chr1 HAVANA gene 28553085 28578545 4311.0 + 0 ENSG00000180098.9 protein_coding TRNAU1AP 2 OTTHUMG00000003653.2 +7070 chr1 ENSEMBL gene 28578749 28578822 74.0 - 0 ENSG00000221539.1 snoRNA SNORD99 3 +7071 chr1 ENSEMBL gene 28579764 28579893 130.0 - 0 ENSG00000278274.1 snoRNA SNORA61 3 +7072 chr1 ENSEMBL gene 28580381 28580512 132.0 - 0 ENSG00000273544.1 snoRNA SNORA44 3 +7073 chr1 ENSEMBL gene 28580920 28581054 135.0 - 0 ENSG00000280498.1 snoRNA SNORA16A 3 +7074 chr1 ENSEMBL gene 28580920 28581056 137.0 - 0 ENSG00000274582.1 snoRNA SNORA16A 3 +7075 chr1 HAVANA gene 28578538 28583132 4266.0 - 0 ENSG00000197989.14 antisense SNHG12 2 OTTHUMG00000003654.4 ncRNA_host +7076 chr1 HAVANA gene 28592200 28595443 2200.0 + 0 ENSG00000188060.7 protein_coding RAB42 2 OTTHUMG00000003656.2 +7077 chr1 HAVANA gene 28589323 28643085 2337.0 - 0 ENSG00000120656.11 protein_coding TAF12 2 OTTHUMG00000003655.1 +7078 chr1 HAVANA gene 28643228 28648581 978.0 + 0 ENSG00000229388.1 lincRNA LINC01715 1 OTTHUMG00000003649.1 +7079 chr1 HAVANA gene 28648600 28648730 131.0 + 0 ENSG00000270103.3 lincRNA AL360012.1 2 OTTHUMG00000183994.1 +7080 chr1 ENSEMBL gene 28648600 28648733 134.0 + 0 ENSG00000274978.1 snRNA RNU11 3 +7081 chr1 ENSEMBL gene 28689665 28689794 130.0 + 0 ENSG00000252777.1 scaRNA RF00422 3 +7082 chr1 HAVANA gene 28668732 28719353 6459.0 + 0 ENSG00000162419.12 protein_coding GMEB1 2 OTTHUMG00000003647.2 ncRNA_host +7083 chr1 HAVANA gene 28736621 28769775 3859.0 + 0 ENSG00000198492.15 protein_coding YTHDF2 1 OTTHUMG00000003648.5 +7084 chr1 HAVANA gene 28812142 28871267 9345.0 + 0 ENSG00000116329.10 protein_coding OPRD1 2 OTTHUMG00000003646.2 +7085 chr1 HAVANA gene 28870483 28877336 1085.0 - 0 ENSG00000233427.1 antisense AL009181.1 1 OTTHUMG00000003651.1 +7086 chr1 ENSEMBL gene 28881726 28881835 110.0 - 0 ENSG00000199756.1 misc_RNA RF00019 3 +7087 chr1 HAVANA gene 28982278 28982608 331.0 - 0 ENSG00000225616.2 processed_pseudogene AL138785.1 1 OTTHUMG00000003659.2 pseudo_consens +7088 chr1 ENSEMBL gene 28985710 28985810 101.0 + 0 ENSG00000206704.1 misc_RNA RF00019 3 +7089 chr1 ENSEMBL gene 29041199 29041480 282.0 + 0 ENSG00000277958.1 misc_RNA RF00017 3 +7090 chr1 HAVANA gene 28887091 29120046 10739.0 + 0 ENSG00000159023.21 protein_coding EPB41 2 OTTHUMG00000003644.30 ncRNA_host +7091 chr1 HAVANA gene 29119428 29123935 2639.0 - 0 ENSG00000253304.1 protein_coding TMEM200B 2 OTTHUMG00000003658.3 +7092 chr1 HAVANA gene 29144494 29146994 279.0 - 0 ENSG00000225750.1 lincRNA AL357500.1 2 OTTHUMG00000003643.1 +7093 chr1 ENSEMBL gene 29171285 29171453 169.0 - 0 ENSG00000277916.1 misc_RNA RF02271 3 +7094 chr1 HAVANA gene 29147743 29181987 8893.0 - 0 ENSG00000116350.16 protein_coding SRSF4 2 OTTHUMG00000003663.6 ncRNA_host +7095 chr1 HAVANA gene 29223933 29224816 573.0 + 0 ENSG00000237934.1 antisense AL590729.1 1 OTTHUMG00000003569.2 +7096 chr1 HAVANA gene 29192873 29230942 3922.0 - 0 ENSG00000116353.15 protein_coding MECR 2 OTTHUMG00000059082.4 +7097 chr1 HAVANA gene 29236516 29326813 6682.0 + 0 ENSG00000060656.19 protein_coding PTPRU 2 OTTHUMG00000003699.7 +7098 chr1 HAVANA gene 29329620 29350114 2148.0 - 0 ENSG00000230523.1 lincRNA LINC01756 2 OTTHUMG00000003931.1 +7099 chr1 HAVANA gene 29488193 29496893 349.0 - 0 ENSG00000225011.4 unprocessed_pseudogene AL671862.1 2 OTTHUMG00000057509.1 +7100 chr1 HAVANA gene 29708851 29709547 498.0 - 0 ENSG00000228176.1 lincRNA AC092265.1 2 OTTHUMG00000037527.1 +7101 chr1 HAVANA gene 29755175 29790597 1953.0 + 0 ENSG00000284676.1 lincRNA AL645944.2 2 OTTHUMG00000192312.1 +7102 chr1 HAVANA gene 29904865 29905357 493.0 - 0 ENSG00000270927.1 processed_pseudogene AL645944.1 1 OTTHUMG00000184275.1 pseudo_consens +7103 chr1 HAVANA gene 30013952 30037612 1519.0 - 0 ENSG00000233399.2 lincRNA LINC01648 2 OTTHUMG00000003683.2 +7104 chr1 HAVANA gene 30140263 30141607 551.0 + 0 ENSG00000233372.1 lincRNA AL137076.1 1 OTTHUMG00000003685.1 +7105 chr1 HAVANA gene 30226523 30226615 93.0 + 0 ENSG00000231251.1 processed_pseudogene AL021921.1 2 OTTHUMG00000057511.1 +7106 chr1 HAVANA gene 30409560 30411638 507.0 - 0 ENSG00000236335.1 lincRNA AL161638.2 1 OTTHUMG00000003682.1 +7107 chr1 HAVANA gene 30415825 30421108 481.0 + 0 ENSG00000231949.1 lincRNA AL161638.1 2 OTTHUMG00000037511.1 +7108 chr1 HAVANA gene 30711277 30723587 4606.0 - 0 ENSG00000162510.5 protein_coding MATN1 2 OTTHUMG00000003705.2 +7109 chr1 HAVANA gene 30718504 30726827 4024.0 + 0 ENSG00000186056.10 antisense MATN1-AS1 2 OTTHUMG00000003706.3 +7110 chr1 ENSEMBL gene 30739156 30739232 77.0 - 0 ENSG00000264773.1 miRNA MIR4420 3 +7111 chr1 HAVANA gene 30732469 30757820 3274.0 - 0 ENSG00000162511.7 protein_coding LAPTM5 2 OTTHUMG00000003707.1 ncRNA_host +7112 chr1 HAVANA gene 30810378 30815553 444.0 - 0 ENSG00000229607.1 lincRNA AL137027.1 2 OTTHUMG00000003704.1 +7113 chr1 HAVANA gene 30824228 30834431 1646.0 + 0 ENSG00000223382.4 lincRNA LINC01778 2 OTTHUMG00000003749.6 +7114 chr1 ENSEMBL gene 30843823 30844110 288.0 + 0 ENSG00000222784.1 misc_RNA RN7SKP91 3 +7115 chr1 HAVANA gene 30858158 30860254 1747.0 + 0 ENSG00000235143.1 antisense AL445235.1 2 OTTHUMG00000043647.1 +7116 chr1 HAVANA gene 30869467 30908761 7067.0 - 0 ENSG00000162512.15 protein_coding SDC3 2 OTTHUMG00000043646.1 +7117 chr1 ENSEMBL gene 30918469 30918735 267.0 - 0 ENSG00000266210.2 misc_RNA RN7SL371P 3 +7118 chr1 HAVANA gene 31036734 31037240 507.0 + 0 ENSG00000237329.2 processed_pseudogene AL356320.2 1 OTTHUMG00000003787.3 pseudo_consens +7119 chr1 HAVANA gene 31050872 31051034 163.0 + 0 ENSG00000232768.1 processed_pseudogene AL356320.1 1 OTTHUMG00000003789.1 pseudo_consens +7120 chr1 HAVANA gene 30931506 31065991 6621.0 - 0 ENSG00000134644.15 protein_coding PUM1 1 OTTHUMG00000003795.5 +7121 chr1 HAVANA gene 31094987 31095558 252.0 - 0 ENSG00000215900.4 processed_pseudogene SELENOWP1 1 OTTHUMG00000008500.2 pseudo_consens +7122 chr1 HAVANA gene 31108188 31108623 436.0 - 0 ENSG00000225142.2 processed_pseudogene AC114495.1 1 OTTHUMG00000003786.2 pseudo_consens +7123 chr1 HAVANA gene 31179745 31239554 2987.0 - 0 ENSG00000084628.9 protein_coding NKAIN1 2 OTTHUMG00000003788.4 +7124 chr1 HAVANA gene 31263245 31263681 437.0 - 0 ENSG00000229447.2 processed_pseudogene AC114495.2 1 OTTHUMG00000003793.2 pseudo_consens,overlapping_locus +7125 chr1 HAVANA gene 31259568 31296782 3881.0 - 0 ENSG00000060688.12 protein_coding SNRNP40 2 OTTHUMG00000003790.2 overlapping_locus +7126 chr1 HAVANA gene 31333067 31346799 439.0 - 0 ENSG00000229044.1 antisense AL451070.1 1 OTTHUMG00000003794.1 +7127 chr1 HAVANA gene 31296982 31364953 1921.0 + 0 ENSG00000121766.15 protein_coding ZCCHC17 2 OTTHUMG00000003791.2 +7128 chr1 HAVANA gene 31365625 31376850 1026.0 - 0 ENSG00000121769.7 protein_coding FABP3 2 OTTHUMG00000003797.4 +7129 chr1 HAVANA gene 31409565 31434680 3549.0 + 0 ENSG00000168528.11 protein_coding SERINC2 2 OTTHUMG00000003796.2 +7130 chr1 HAVANA gene 31487589 31488930 1342.0 - 0 ENSG00000215899.3 processed_pseudogene AC209007.1 1 OTTHUMG00000003878.3 pseudo_consens +7131 chr1 ENSEMBL gene 31497577 31497683 107.0 - 0 ENSG00000206981.1 snRNA RNU6-40P 3 +7132 chr1 ENSEMBL gene 31503631 31503744 114.0 - 0 ENSG00000265961.1 misc_RNA RF00019 3 +7133 chr1 HAVANA gene 31500085 31509648 3555.0 + 0 ENSG00000260386.6 transcribed_unitary_pseudogene LINC01225 2 OTTHUMG00000174814.3 overlapping_locus +7134 chr1 HAVANA gene 31571585 31575573 591.0 - 0 ENSG00000229167.1 antisense AC114488.1 1 OTTHUMG00000003875.1 +7135 chr1 HAVANA gene 31506226 31583306 9848.0 + 0 ENSG00000284543.1 processed_transcript LINC01226 2 OTTHUMG00000191824.1 overlapping_locus +7136 chr1 HAVANA gene 31576485 31587686 5281.0 + 0 ENSG00000142910.15 protein_coding TINAGL1 2 OTTHUMG00000003884.1 +7137 chr1 HAVANA gene 31617686 31632518 2558.0 + 0 ENSG00000121764.11 protein_coding HCRTR1 2 OTTHUMG00000003876.2 +7138 chr1 HAVANA gene 31629862 31644896 2227.0 - 0 ENSG00000162517.12 protein_coding PEF1 2 OTTHUMG00000003877.2 +7139 chr1 HAVANA gene 31644694 31649371 480.0 + 0 ENSG00000264078.1 antisense AC114488.3 2 OTTHUMG00000179423.1 overlapping_locus +7140 chr1 HAVANA gene 31644049 31660162 2216.0 + 0 ENSG00000235790.7 antisense AC114488.2 2 OTTHUMG00000003881.6 overlapping_locus +7141 chr1 HAVANA gene 31652247 31704319 9269.0 - 0 ENSG00000084636.17 protein_coding COL16A1 2 OTTHUMG00000003883.23 +7142 chr1 ENSEMBL gene 31758660 31758735 76.0 - 0 ENSG00000266580.1 miRNA MIR4254 3 +7143 chr1 HAVANA gene 31727117 31764893 7756.0 - 0 ENSG00000121753.12 protein_coding ADGRB2 1 OTTHUMG00000003885.6 ncRNA_host +7144 chr1 HAVANA gene 31789130 31791322 537.0 + 0 ENSG00000254545.1 antisense AL354919.2 2 OTTHUMG00000165113.1 +7145 chr1 HAVANA gene 31790422 31816051 7085.0 - 0 ENSG00000134668.12 protein_coding SPOCD1 1 OTTHUMG00000003879.6 +7146 chr1 HAVANA gene 31842019 31855568 2257.0 - 0 ENSG00000203620.2 lincRNA AL354919.1 2 OTTHUMG00000003927.1 overlapping_locus +7147 chr1 HAVANA gene 31851913 31921841 587.0 - 0 ENSG00000269967.1 lincRNA AL136115.2 2 OTTHUMG00000184139.1 overlapping_locus +7148 chr1 HAVANA gene 31933020 31933975 517.0 + 0 ENSG00000228634.1 lincRNA AL136115.1 2 OTTHUMG00000004135.2 +7149 chr1 HAVANA gene 31906421 31944856 6267.0 - 0 ENSG00000184007.20 protein_coding PTP4A2 2 OTTHUMG00000003801.15 overlapping_locus +7150 chr1 HAVANA gene 31972189 31987034 1873.0 - 0 ENSG00000284702.1 lincRNA AL136115.3 2 OTTHUMG00000192313.1 +7151 chr1 HAVANA gene 32013829 32060850 3588.0 + 0 ENSG00000121774.17 protein_coding KHDRBS1 2 OTTHUMG00000003921.9 +7152 chr1 HAVANA gene 32052291 32073474 624.0 - 0 ENSG00000203325.3 antisense AL445248.1 2 OTTHUMG00000007683.2 +7153 chr1 ENSEMBL gene 32086949 32087007 59.0 + 0 ENSG00000266203.1 miRNA MIR5585 3 +7154 chr1 ENSEMBL gene 32087523 32087813 291.0 - 0 ENSG00000276493.1 misc_RNA RF00017 3 +7155 chr1 HAVANA gene 32072031 32102866 2820.0 + 0 ENSG00000121775.17 protein_coding TMEM39B 2 OTTHUMG00000004020.9 ncRNA_host +7156 chr1 HAVANA gene 32170733 32176568 667.0 + 0 ENSG00000250135.1 sense_intronic AL049795.2 1 OTTHUMG00000004332.3 overlapping_locus +7157 chr1 HAVANA gene 32108038 32176568 7480.0 + 0 ENSG00000025800.13 protein_coding KPNA6 2 OTTHUMG00000004333.5 overlapping_locus +7158 chr1 HAVANA gene 32179686 32198285 5103.0 + 0 ENSG00000084652.15 protein_coding TXLNA 2 OTTHUMG00000004423.6 +7159 chr1 HAVANA gene 32200386 32205387 2818.0 + 0 ENSG00000160050.14 protein_coding CCDC28B 2 OTTHUMG00000005738.8 +7160 chr1 HAVANA gene 32204769 32206814 1357.0 - 0 ENSG00000224066.1 antisense AL049795.1 1 OTTHUMG00000005740.3 +7161 chr1 HAVANA gene 32205661 32208687 2478.0 + 0 ENSG00000160051.11 protein_coding IQCC 2 OTTHUMG00000005739.4 +7162 chr1 HAVANA gene 32209094 32216196 1869.0 + 0 ENSG00000222046.2 protein_coding DCDC2B 2 OTTHUMG00000005741.3 +7163 chr1 HAVANA gene 32214472 32222359 3571.0 - 0 ENSG00000160055.19 protein_coding TMEM234 1 OTTHUMG00000005742.6 +7164 chr1 HAVANA gene 32221928 32231604 1725.0 + 0 ENSG00000084623.11 protein_coding EIF3I 2 OTTHUMG00000007364.5 +7165 chr1 HAVANA gene 32231658 32241620 2961.0 - 0 ENSG00000220785.7 transcribed_unprocessed_pseudogene MTMR9LP 2 OTTHUMG00000007461.5 +7166 chr1 HAVANA gene 32247233 32248856 936.0 + 0 ENSG00000183615.5 protein_coding FAM167B 2 OTTHUMG00000007462.2 +7167 chr1 ENSEMBL gene 32269338 32269597 260.0 - 0 ENSG00000277617.1 misc_RNA RF00017 3 +7168 chr1 HAVANA gene 32251239 32286165 3339.0 + 0 ENSG00000182866.16 protein_coding LCK 2 OTTHUMG00000007463.6 +7169 chr1 ENSEMBL gene 32286452 32286561 110.0 - 0 ENSG00000252450.1 misc_RNA RF00019 3 +7170 chr1 HAVANA gene 32292086 32333635 3963.0 + 0 ENSG00000116478.11 protein_coding HDAC1 1 OTTHUMG00000007529.5 +7171 chr1 HAVANA gene 32333832 32336379 1699.0 - 0 ENSG00000175130.6 protein_coding MARCKSL1 2 OTTHUMG00000007589.3 +7172 chr1 HAVANA gene 32349194 32350663 687.0 - 0 ENSG00000233775.1 lincRNA AL109945.1 2 OTTHUMG00000007633.4 +7173 chr1 HAVANA gene 32361270 32364278 2845.0 - 0 ENSG00000225828.1 protein_coding FAM229A 2 OTTHUMG00000007587.6 +7174 chr1 HAVANA gene 32351521 32364312 2191.0 + 0 ENSG00000162526.6 protein_coding TSSK3 1 OTTHUMG00000007585.3 +7175 chr1 HAVANA gene 32365103 32394731 6271.0 - 0 ENSG00000160058.18 protein_coding BSDC1 1 OTTHUMG00000007588.7 +7176 chr1 HAVANA gene 32402109 32403115 1007.0 - 0 ENSG00000224333.1 processed_pseudogene GAPDHP20 1 OTTHUMG00000007747.1 pseudo_consens +7177 chr1 HAVANA gene 32421979 32422319 341.0 + 0 ENSG00000270850.1 processed_pseudogene AL356986.1 1 OTTHUMG00000184276.1 pseudo_consens +7178 chr1 HAVANA gene 32423214 32426789 1801.0 - 0 ENSG00000229259.1 unprocessed_pseudogene LRRC37A12P 2 OTTHUMG00000038009.1 +7179 chr1 ENSEMBL gene 32457835 32458135 301.0 + 0 ENSG00000263529.2 misc_RNA RN7SL122P 3 +7180 chr1 HAVANA gene 32465069 32496686 12834.0 + 0 ENSG00000273274.1 protein_coding ZBTB8B 2 OTTHUMG00000167087.2 overlapping_locus +7181 chr1 HAVANA gene 32465057 32600792 3447.0 + 0 ENSG00000254553.1 protein_coding AL033529.1 2 OTTHUMG00000167086.2 overlapping_locus +7182 chr1 HAVANA gene 32539427 32605939 7075.0 + 0 ENSG00000160062.14 protein_coding ZBTB8A 2 OTTHUMG00000007855.6 overlapping_locus +7183 chr1 ENSEMBL gene 32639951 32640052 102.0 + 0 ENSG00000200591.1 misc_RNA RF00019 3 +7184 chr1 HAVANA gene 32600172 32650903 3531.0 - 0 ENSG00000176261.15 protein_coding ZBTB8OS 2 OTTHUMG00000007856.9 +7185 chr1 HAVANA gene 32651142 32686211 9470.0 + 0 ENSG00000162521.18 protein_coding RBBP4 2 OTTHUMG00000007998.13 +7186 chr1 HAVANA gene 32680360 32703596 3487.0 - 0 ENSG00000162520.14 protein_coding SYNC 2 OTTHUMG00000008087.6 +7187 chr1 HAVANA gene 32717734 32725237 395.0 - 0 ENSG00000224409.1 antisense AC114489.1 2 OTTHUMG00000041501.1 +7188 chr1 HAVANA gene 32741885 32774970 5965.0 + 0 ENSG00000162522.10 protein_coding KIAA1522 1 OTTHUMG00000008088.6 +7189 chr1 HAVANA gene 32775237 32818153 8212.0 - 0 ENSG00000134684.10 protein_coding YARS 2 OTTHUMG00000003933.2 +7190 chr1 HAVANA gene 32816767 32858879 9194.0 + 0 ENSG00000116497.17 protein_coding S100PBP 2 OTTHUMG00000003955.8 +7191 chr1 HAVANA gene 32862268 32872482 3139.0 - 0 ENSG00000160097.17 protein_coding FNDC5 2 OTTHUMG00000004015.5 +7192 chr1 HAVANA gene 32885994 32898441 1991.0 + 0 ENSG00000121905.9 protein_coding HPCA 2 OTTHUMG00000004017.2 +7193 chr1 HAVANA gene 32894594 32901438 1417.0 - 0 ENSG00000121900.18 protein_coding TMEM54 2 OTTHUMG00000004016.3 +7194 chr1 HAVANA gene 32936445 32964685 2610.0 - 0 ENSG00000116514.16 protein_coding RNF19B 2 OTTHUMG00000004013.4 +7195 chr1 HAVANA gene 32973553 32974463 911.0 + 0 ENSG00000278966.2 TEC AL031602.1 2 OTTHUMG00000191421.1 +7196 chr1 HAVANA gene 32979947 32980472 526.0 + 0 ENSG00000217644.5 processed_pseudogene AL355864.1 1 OTTHUMG00000004014.2 pseudo_consens +7197 chr1 HAVANA gene 32986952 32988233 863.0 + 0 ENSG00000239670.1 unprocessed_pseudogene AL355864.2 1 OTTHUMG00000004128.1 pseudo_consens,overlapping_locus +7198 chr1 ENSEMBL gene 33029232 33029576 345.0 - 0 ENSG00000276645.1 misc_RNA RF00017 3 +7199 chr1 HAVANA gene 32987075 33032469 1680.0 + 0 ENSG00000236065.2 antisense AL020995.1 2 OTTHUMG00000004129.1 overlapping_locus +7200 chr1 HAVANA gene 33007940 33080996 5727.0 - 0 ENSG00000004455.16 protein_coding AK2 1 OTTHUMG00000004131.6 ncRNA_host +7201 chr1 HAVANA gene 33081104 33120530 6559.0 + 0 ENSG00000142920.16 protein_coding AZIN2 2 OTTHUMG00000004130.3 +7202 chr1 HAVANA gene 33141871 33143230 1360.0 - 0 ENSG00000278997.1 TEC AL662907.1 2 OTTHUMG00000175793.1 +7203 chr1 HAVANA gene 33162851 33166298 3448.0 + 0 ENSG00000279179.1 TEC AL662907.2 2 OTTHUMG00000175794.1 +7204 chr1 HAVANA gene 33145402 33182059 3646.0 - 0 ENSG00000116525.13 protein_coding TRIM62 1 OTTHUMG00000004132.4 +7205 chr1 HAVANA gene 33194788 33200353 1947.0 + 0 ENSG00000284721.1 lincRNA AL662907.3 2 OTTHUMG00000192314.2 +7206 chr1 HAVANA gene 33261212 33261680 469.0 + 0 ENSG00000270115.1 lincRNA AL513327.3 2 OTTHUMG00000183926.1 overlapping_locus +7207 chr1 HAVANA gene 33256545 33300719 3331.0 + 0 ENSG00000160094.14 protein_coding ZNF362 2 OTTHUMG00000004124.5 overlapping_locus +7208 chr1 HAVANA gene 33306766 33321098 1023.0 - 0 ENSG00000184389.9 protein_coding A3GALT2 2 OTTHUMG00000004125.4 +7209 chr1 ENSEMBL gene 33332393 33332492 100.0 - 0 ENSG00000284154.1 miRNA MIR3605 3 +7210 chr1 ENSEMBL gene 33336566 33336864 299.0 - 0 ENSG00000222112.1 misc_RNA RN7SKP16 3 +7211 chr1 HAVANA gene 33307348 33349245 4015.0 + 0 ENSG00000225313.5 antisense AL513327.1 1 OTTHUMG00000004126.5 +7212 chr1 HAVANA gene 33350352 33363245 490.0 + 0 ENSG00000233246.1 antisense AL513327.2 1 OTTHUMG00000004127.1 +7213 chr1 HAVANA gene 33323623 33431052 4975.0 - 0 ENSG00000134686.18 protein_coding PHC2 2 OTTHUMG00000004133.1 ncRNA_host +7214 chr1 HAVANA gene 33466249 33468954 2706.0 + 0 ENSG00000234512.1 unitary_pseudogene TLR12P 2 OTTHUMG00000154094.1 +7215 chr1 HAVANA gene 33472645 33496507 5308.0 + 0 ENSG00000121903.14 protein_coding ZSCAN20 2 OTTHUMG00000004173.3 +7216 chr1 HAVANA gene 33512008 33512743 736.0 - 0 ENSG00000235907.2 processed_pseudogene AC115285.1 1 OTTHUMG00000004175.2 pseudo_consens +7217 chr1 HAVANA gene 33838523 33840140 1618.0 + 0 ENSG00000227000.2 processed_pseudogene HSPD1P14 1 OTTHUMG00000057513.2 pseudo_consens +7218 chr1 HAVANA gene 33860475 33864791 2561.0 + 0 ENSG00000176256.10 protein_coding HMGB4 2 OTTHUMG00000013143.3 +7219 chr1 HAVANA gene 33868953 33885458 2253.0 + 0 ENSG00000231163.5 antisense CSMD2-AS1 2 OTTHUMG00000013025.2 +7220 chr1 ENSEMBL gene 34112949 34113063 115.0 + 0 ENSG00000201148.1 rRNA_pseudogene RNA5SP42 3 +7221 chr1 HAVANA gene 33513999 34165842 18157.0 - 0 ENSG00000121904.17 protein_coding CSMD2 2 OTTHUMG00000011135.10 +7222 chr1 HAVANA gene 34166883 34219131 2576.0 + 0 ENSG00000142698.14 protein_coding C1orf94 2 OTTHUMG00000004012.4 +7223 chr1 HAVANA gene 34276859 34277292 434.0 - 0 ENSG00000270241.1 processed_pseudogene AC115286.1 1 OTTHUMG00000184278.1 pseudo_consens +7224 chr1 ENSEMBL gene 34669599 34669694 96.0 - 0 ENSG00000207941.1 miRNA MIR552 3 +7225 chr1 HAVANA gene 34755047 34758512 1355.0 + 0 ENSG00000189280.3 protein_coding GJB5 2 OTTHUMG00000004053.1 +7226 chr1 HAVANA gene 34759741 34763724 2840.0 + 0 ENSG00000189433.5 protein_coding GJB4 2 OTTHUMG00000004052.1 +7227 chr1 HAVANA gene 34781189 34786369 2387.0 + 0 ENSG00000188910.7 protein_coding GJB3 2 OTTHUMG00000004051.1 +7228 chr1 HAVANA gene 34761426 34788097 560.0 - 0 ENSG00000255811.1 antisense AL121988.1 2 OTTHUMG00000167758.1 overlapping_locus +7229 chr1 HAVANA gene 34792998 34795747 1717.0 + 0 ENSG00000187513.8 protein_coding GJA4 2 OTTHUMG00000004050.2 +7230 chr1 HAVANA gene 34850694 34851555 720.0 + 0 ENSG00000230163.1 antisense AL122010.1 2 OTTHUMG00000004048.1 +7231 chr1 HAVANA gene 34712737 34859816 8091.0 - 0 ENSG00000163866.8 protein_coding SMIM12 2 OTTHUMG00000004375.3 overlapping_locus +7232 chr1 HAVANA gene 34865436 34929585 3977.0 - 0 ENSG00000116544.11 protein_coding DLGAP3 2 OTTHUMG00000004049.1 +7233 chr1 HAVANA gene 34975699 34978706 1887.0 - 0 ENSG00000241014.2 transcribed_unitary_pseudogene AC114490.1 2 OTTHUMG00000004046.4 overlapping_locus +7234 chr1 HAVANA gene 34974356 34985313 3346.0 - 0 ENSG00000284773.1 protein_coding AC114490.3 2 OTTHUMG00000192527.1 overlapping_locus +7235 chr1 HAVANA gene 34981535 34985353 922.0 - 0 ENSG00000243749.1 protein_coding TMEM35B 1 OTTHUMG00000004158.1 overlapping_locus +7236 chr1 HAVANA gene 34981533 35031741 3099.0 - 0 ENSG00000271741.1 protein_coding AC114490.2 2 OTTHUMG00000185379.1 overlapping_locus +7237 chr1 HAVANA gene 34986165 35031968 9591.0 - 0 ENSG00000163867.16 protein_coding ZMYM6 2 OTTHUMG00000004163.5 overlapping_locus +7238 chr1 HAVANA gene 35053468 35059271 478.0 + 0 ENSG00000233940.1 processed_pseudogene RPL12P45 1 OTTHUMG00000004160.1 pseudo_consens +7239 chr1 HAVANA gene 35032172 35115859 5220.0 + 0 ENSG00000197056.10 protein_coding ZMYM1 1 OTTHUMG00000004374.5 +7240 chr1 HAVANA gene 35122022 35122484 463.0 + 0 ENSG00000228348.1 processed_pseudogene EFCAB14P1 1 OTTHUMG00000004161.1 pseudo_consens +7241 chr1 HAVANA gene 35141515 35146435 1886.0 - 0 ENSG00000284640.1 lincRNA AL590434.1 2 OTTHUMG00000192315.1 +7242 chr1 HAVANA gene 35176378 35193148 7426.0 - 0 ENSG00000116560.10 protein_coding SFPQ 2 OTTHUMG00000004157.7 +7243 chr1 ENSEMBL gene 35195969 35196062 94.0 + 0 ENSG00000201868.1 misc_RNA RF00019 3 +7244 chr1 ENSEMBL gene 35292196 35292498 303.0 - 0 ENSG00000240374.3 misc_RNA RN7SL503P 3 +7245 chr1 ENSEMBL gene 35310274 35310425 152.0 + 0 ENSG00000201542.1 snoRNA RF00091 3 +7246 chr1 HAVANA gene 35350722 35351607 886.0 + 0 ENSG00000229994.1 processed_pseudogene RPL5P4 1 OTTHUMG00000004240.1 pseudo_consens,overlapping_locus +7247 chr1 HAVANA gene 35358822 35366077 459.0 - 0 ENSG00000227409.1 antisense ZMYM4-AS1 2 OTTHUMG00000004369.1 +7248 chr1 ENSEMBL gene 35399997 35400319 323.0 + 0 ENSG00000278702.1 misc_RNA RF00017 3 +7249 chr1 HAVANA gene 35268967 35422058 7647.0 + 0 ENSG00000146463.11 protein_coding ZMYM4 2 OTTHUMG00000004241.5 ncRNA_host,overlapping_locus +7250 chr1 HAVANA gene 35509742 35511438 1003.0 + 0 ENSG00000236274.1 processed_pseudogene AC004865.1 2 OTTHUMG00000004373.1 +7251 chr1 HAVANA gene 35433490 35557950 9629.0 - 0 ENSG00000142687.17 protein_coding KIAA0319L 1 OTTHUMG00000004370.6 +7252 chr1 HAVANA gene 35557473 35567274 4917.0 + 0 ENSG00000020129.15 protein_coding NCDN 2 OTTHUMG00000059204.3 +7253 chr1 HAVANA gene 35569813 35577729 1030.0 - 0 ENSG00000239636.1 antisense AC004865.2 2 OTTHUMG00000004372.1 +7254 chr1 HAVANA gene 35573370 35595328 2189.0 + 0 ENSG00000116819.7 protein_coding TFAP2E 2 OTTHUMG00000004388.2 +7255 chr1 HAVANA gene 35599544 35641844 4843.0 - 0 ENSG00000126067.11 protein_coding PSMB2 2 OTTHUMG00000004169.2 +7256 chr1 HAVANA gene 35713875 35719472 3629.0 - 0 ENSG00000142686.7 protein_coding C1orf216 2 OTTHUMG00000004167.3 +7257 chr1 HAVANA gene 35739389 35743576 539.0 + 0 ENSG00000232335.1 antisense AL354864.1 2 OTTHUMG00000008426.1 +7258 chr1 HAVANA gene 35720218 35769967 5411.0 - 0 ENSG00000092853.13 protein_coding CLSPN 2 OTTHUMG00000004168.6 +7259 chr1 HAVANA gene 35808172 35857890 7267.0 + 0 ENSG00000134698.10 protein_coding AGO4 2 OTTHUMG00000004243.4 +7260 chr1 HAVANA gene 35873270 35873752 483.0 - 0 ENSG00000271164.1 processed_pseudogene AL139286.1 1 OTTHUMG00000184282.1 pseudo_consens +7261 chr1 HAVANA gene 35929720 35930115 396.0 - 0 ENSG00000271914.1 lincRNA AL139286.2 2 OTTHUMG00000185706.1 +7262 chr1 HAVANA gene 35869808 35930528 13886.0 + 0 ENSG00000092847.11 protein_coding AGO1 2 OTTHUMG00000007381.4 +7263 chr1 HAVANA gene 35992109 36013630 659.0 - 0 ENSG00000271554.1 antisense AL138787.2 2 OTTHUMG00000184173.1 +7264 chr1 HAVANA gene 35930718 36072500 21157.0 + 0 ENSG00000126070.19 protein_coding AGO3 2 OTTHUMG00000184172.4 +7265 chr1 HAVANA gene 36080066 36084026 1674.0 - 0 ENSG00000232862.5 transcribed_processed_pseudogene AL138787.1 1 OTTHUMG00000008497.4 pseudo_consens +7266 chr1 HAVANA gene 36084075 36088275 1978.0 + 0 ENSG00000092850.11 protein_coding TEKT2 2 OTTHUMG00000007629.3 +7267 chr1 HAVANA gene 36088875 36093932 1668.0 + 0 ENSG00000116863.10 protein_coding ADPRHL2 2 OTTHUMG00000007628.2 +7268 chr1 HAVANA gene 36095236 36125220 4670.0 - 0 ENSG00000171812.12 protein_coding COL8A2 2 OTTHUMG00000007665.6 +7269 chr1 HAVANA gene 36136570 36156053 3527.0 - 0 ENSG00000054116.11 protein_coding TRAPPC3 2 OTTHUMG00000007664.3 +7270 chr1 HAVANA gene 36155579 36180849 5271.0 + 0 ENSG00000116871.15 protein_coding MAP7D1 1 OTTHUMG00000007714.6 +7271 chr1 ENSEMBL gene 36191915 36192170 256.0 + 0 ENSG00000264592.2 misc_RNA RN7SL131P 3 +7272 chr1 HAVANA gene 36241898 36242156 259.0 - 0 ENSG00000231849.1 processed_pseudogene UBE2V2P4 2 OTTHUMG00000007715.1 +7273 chr1 HAVANA gene 36224416 36305357 4736.0 + 0 ENSG00000054118.14 protein_coding THRAP3 2 OTTHUMG00000007866.7 +7274 chr1 HAVANA gene 36322031 36324154 1211.0 - 0 ENSG00000142694.6 protein_coding EVA1B 2 OTTHUMG00000007867.1 +7275 chr1 HAVANA gene 36306387 36324886 4474.0 + 0 ENSG00000214193.10 protein_coding SH3D21 2 OTTHUMG00000007868.9 overlapping_locus +7276 chr1 HAVANA gene 36323734 36329221 1838.0 + 0 ENSG00000116883.8 antisense AL591845.1 2 OTTHUMG00000184623.1 overlapping_locus +7277 chr1 HAVANA gene 36339624 36385896 5590.0 - 0 ENSG00000196182.10 protein_coding STK40 2 OTTHUMG00000008238.4 +7278 chr1 HAVANA gene 36391238 36397892 1496.0 - 0 ENSG00000181817.5 protein_coding LSM10 2 OTTHUMG00000008140.1 +7279 chr1 ENSEMBL gene 36402721 36402859 139.0 - 0 ENSG00000222821.1 snRNA RNU4-27P 3 +7280 chr1 ENSEMBL gene 36418450 36418578 129.0 - 0 ENSG00000201448.1 snoRNA SNORA63C 3 +7281 chr1 HAVANA gene 36415827 36450451 2788.0 - 0 ENSG00000116885.18 protein_coding OSCP1 1 OTTHUMG00000008139.6 ncRNA_host +7282 chr1 HAVANA gene 36455718 36464437 2916.0 - 0 ENSG00000116898.11 protein_coding MRPS15 2 OTTHUMG00000008042.4 +7283 chr1 HAVANA gene 36466043 36483278 8429.0 - 0 ENSG00000119535.17 protein_coding CSF3R 2 OTTHUMG00000008010.7 +7284 chr1 HAVANA gene 36630335 36630857 523.0 + 0 ENSG00000230214.1 processed_pseudogene FTLP18 1 OTTHUMG00000004186.1 pseudo_consens +7285 chr1 HAVANA gene 36703953 36710582 2694.0 + 0 ENSG00000284705.1 lincRNA AL596257.1 2 OTTHUMG00000192316.1 +7286 chr1 HAVANA gene 36768122 36769725 1521.0 - 0 ENSG00000284720.1 lincRNA AC117945.2 2 OTTHUMG00000192317.1 +7287 chr1 HAVANA gene 36773140 36775768 463.0 + 0 ENSG00000234481.1 antisense AC117945.1 2 OTTHUMG00000004187.1 +7288 chr1 HAVANA gene 36795527 37034129 10111.0 - 0 ENSG00000163873.9 protein_coding GRIK3 2 OTTHUMG00000004189.1 +7289 chr1 HAVANA gene 37133489 37136146 1039.0 + 0 ENSG00000284650.1 lincRNA AL031430.1 2 OTTHUMG00000192318.1 +7290 chr1 ENSEMBL gene 37161563 37161634 72.0 + 0 ENSG00000264698.1 miRNA MIR4255 3 +7291 chr1 ENSEMBL gene 37203610 37203716 107.0 + 0 ENSG00000207328.1 snRNA RNU6-636P 3 +7292 chr1 ENSEMBL gene 37264677 37264786 110.0 - 0 ENSG00000252368.1 rRNA_pseudogene RNA5SP43 3 +7293 chr1 HAVANA gene 37262739 37325100 596.0 - 0 ENSG00000223944.1 lincRNA AL353604.1 1 OTTHUMG00000004188.1 +7294 chr1 HAVANA gene 37330852 37330996 145.0 + 0 ENSG00000230451.2 processed_pseudogene RPS29P6 1 OTTHUMG00000156996.2 pseudo_consens +7295 chr1 HAVANA gene 37454879 37474411 1395.0 - 0 ENSG00000233621.1 antisense LINC01137 2 OTTHUMG00000004224.1 +7296 chr1 ENSEMBL gene 37480230 37480289 60.0 + 0 ENSG00000283724.1 miRNA MIR6732 3 +7297 chr1 HAVANA gene 37474552 37484379 3121.0 + 0 ENSG00000163874.10 protein_coding ZC3H12A 1 OTTHUMG00000004221.4 ncRNA_host +7298 chr1 ENSEMBL gene 37500935 37500994 60.0 - 0 ENSG00000263675.1 miRNA MIR5581 3 +7299 chr1 HAVANA gene 37492575 37514774 3487.0 - 0 ENSG00000163875.15 protein_coding MEAF6 2 OTTHUMG00000004223.3 ncRNA_host +7300 chr1 HAVANA gene 37544763 37545294 532.0 + 0 ENSG00000232273.1 processed_pseudogene FTH1P1 1 OTTHUMG00000004219.1 pseudo_consens +7301 chr1 HAVANA gene 37534449 37554344 5769.0 - 0 ENSG00000163877.10 protein_coding SNIP1 2 OTTHUMG00000004225.3 +7302 chr1 HAVANA gene 37556247 37556499 253.0 + 0 ENSG00000237749.4 processed_pseudogene AL034379.1 2 OTTHUMG00000004220.2 +7303 chr1 HAVANA gene 37556919 37566857 4456.0 + 0 ENSG00000163879.10 protein_coding DNALI1 2 OTTHUMG00000004222.3 +7304 chr1 HAVANA gene 37566816 37595935 5745.0 - 0 ENSG00000134697.12 protein_coding GNL2 1 OTTHUMG00000004322.4 +7305 chr1 HAVANA gene 37596126 37607336 1326.0 + 0 ENSG00000284748.1 bidirectional_promoter_lncRNA AL513220.1 2 OTTHUMG00000192320.1 +7306 chr1 HAVANA gene 37611350 37634923 3089.0 - 0 ENSG00000169218.13 protein_coding RSPO1 2 OTTHUMG00000004321.4 +7307 chr1 HAVANA gene 37681570 37692249 4434.0 - 0 ENSG00000116922.14 protein_coding C1orf109 2 OTTHUMG00000004323.6 +7308 chr1 HAVANA gene 37692418 37709719 2469.0 + 0 ENSG00000134690.10 protein_coding CDCA8 2 OTTHUMG00000004320.1 +7309 chr1 ENSEMBL gene 37737955 37738054 100.0 - 0 ENSG00000200421.1 misc_RNA RF00019 3 +7310 chr1 HAVANA gene 37713880 37765133 8152.0 - 0 ENSG00000183317.16 protein_coding EPHA10 2 OTTHUMG00000004325.3 ncRNA_host +7311 chr1 HAVANA gene 37776670 37779418 1892.0 + 0 ENSG00000214141.4 processed_pseudogene ACTN4P2 1 OTTHUMG00000004315.1 pseudo_consens +7312 chr1 HAVANA gene 37782457 37782885 429.0 - 0 ENSG00000227416.2 processed_pseudogene AL929472.1 1 OTTHUMG00000004316.1 pseudo_consens +7313 chr1 HAVANA gene 37799720 37800879 700.0 - 0 ENSG00000233728.1 antisense AL929472.3 2 OTTHUMG00000037488.1 +7314 chr1 HAVANA gene 37793802 37801137 3018.0 + 0 ENSG00000185090.14 protein_coding MANEAL 2 OTTHUMG00000004317.3 +7315 chr1 HAVANA gene 37802944 37808185 1826.0 - 0 ENSG00000196449.3 protein_coding YRDC 2 OTTHUMG00000004318.1 +7316 chr1 HAVANA gene 37806979 37809454 2231.0 + 0 ENSG00000197982.13 protein_coding C1orf122 2 OTTHUMG00000004319.6 +7317 chr1 HAVANA gene 37840986 37841676 691.0 + 0 ENSG00000235673.1 processed_pseudogene AL929472.4 1 OTTHUMG00000004437.1 pseudo_consens +7318 chr1 HAVANA gene 37809567 37859620 8024.0 - 0 ENSG00000188786.9 protein_coding MTF1 2 OTTHUMG00000004439.2 +7319 chr1 HAVANA gene 37860697 37861580 481.0 + 0 ENSG00000230955.1 antisense AL929472.2 2 OTTHUMG00000037489.1 +7320 chr1 ENSEMBL gene 37884237 37884317 81.0 + 0 ENSG00000252448.1 snoRNA RF00092 3 +7321 chr1 ENSEMBL gene 37885023 37885117 95.0 + 0 ENSG00000222282.1 snRNA RNU6-584P 3 +7322 chr1 HAVANA gene 37860697 37947057 8930.0 - 0 ENSG00000204084.12 protein_coding INPP5B 2 OTTHUMG00000004436.2 +7323 chr1 ENSEMBL gene 37953508 37953780 273.0 + 0 ENSG00000277168.1 misc_RNA RF00017 3 +7324 chr1 HAVANA gene 37956975 37990921 4740.0 - 0 ENSG00000183431.11 protein_coding SF3A3 2 OTTHUMG00000004438.1 +7325 chr1 ENSEMBL gene 37991462 37991569 108.0 + 0 ENSG00000212541.1 snRNA RNU6-510P 3 +7326 chr1 HAVANA gene 37996770 38005606 2004.0 - 0 ENSG00000183386.9 protein_coding FHL3 2 OTTHUMG00000004434.2 +7327 chr1 HAVANA gene 38009258 38024824 3385.0 + 0 ENSG00000183520.11 protein_coding UTP11 2 OTTHUMG00000004435.1 +7328 chr1 HAVANA gene 38044611 38046794 2184.0 - 0 ENSG00000185668.7 protein_coding POU3F1 2 OTTHUMG00000000485.2 retrogene +7329 chr1 HAVANA gene 38080572 38080911 340.0 - 0 ENSG00000223589.2 processed_pseudogene AL139158.1 1 OTTHUMG00000000480.3 pseudo_consens +7330 chr1 ENSEMBL gene 38089231 38089329 99.0 + 0 ENSG00000265596.1 miRNA MIR3659 3 +7331 chr1 HAVANA gene 38047314 38119025 684.0 + 0 ENSG00000224592.5 lincRNA AL139158.2 2 OTTHUMG00000000478.1 ncRNA_host +7332 chr1 HAVANA gene 38129464 38140593 1562.0 - 0 ENSG00000284623.1 lincRNA AL139158.3 2 OTTHUMG00000192321.1 +7333 chr1 HAVANA gene 38209034 38214806 2573.0 - 0 ENSG00000237290.2 lincRNA LINC01343 2 OTTHUMG00000000479.2 +7334 chr1 HAVANA gene 38383838 38384422 585.0 - 0 ENSG00000275350.1 processed_pseudogene AL513479.1 2 OTTHUMG00000187523.1 +7335 chr1 ENSEMBL gene 38396659 38396765 107.0 + 0 ENSG00000200796.1 snRNA RNU6-753P 3 +7336 chr1 HAVANA gene 38474875 38496034 1497.0 + 0 ENSG00000238063.2 lincRNA LINC01685 2 OTTHUMG00000000481.2 +7337 chr1 HAVANA gene 38708931 38710890 1960.0 + 0 ENSG00000215895.4 processed_pseudogene AL354702.1 1 OTTHUMG00000000483.3 pseudo_consens +7338 chr1 HAVANA gene 38754216 38815979 1240.0 - 0 ENSG00000284632.1 lincRNA AL354702.2 2 OTTHUMG00000192322.1 +7339 chr1 HAVANA gene 38838198 38859823 5167.0 - 0 ENSG00000116954.7 protein_coding RRAGC 2 OTTHUMG00000000490.2 +7340 chr1 HAVANA gene 38862964 38874105 3039.0 - 0 ENSG00000214114.8 protein_coding MYCBP 2 OTTHUMG00000000484.7 overlapping_locus +7341 chr1 HAVANA gene 38839333 38874494 2171.0 - 0 ENSG00000273637.1 processed_transcript AL139260.2 2 OTTHUMG00000188957.1 overlapping_locus +7342 chr1 HAVANA gene 38874451 38881587 2057.0 - 0 ENSG00000131233.9 protein_coding GJA9 2 OTTHUMG00000000482.4 overlapping_locus +7343 chr1 HAVANA gene 38864501 38881617 3251.0 - 0 ENSG00000274944.4 protein_coding GJA9-MYCBP 2 OTTHUMG00000187290.1 overlapping_locus +7344 chr1 HAVANA gene 38860000 38919396 976.0 + 0 ENSG00000228436.2 antisense AL139260.1 2 OTTHUMG00000000491.2 +7345 chr1 ENSEMBL gene 38926870 38926977 108.0 + 0 ENSG00000199963.1 snRNA RNU6-605P 3 +7346 chr1 HAVANA gene 38885807 38941799 2795.0 - 0 ENSG00000158315.10 protein_coding RHBDL2 2 OTTHUMG00000000487.2 +7347 chr1 ENSEMBL gene 38950825 38950925 101.0 - 0 ENSG00000207466.1 misc_RNA RF00019 3 +7348 chr1 HAVANA gene 38958275 38958925 350.0 - 0 ENSG00000235549.1 processed_pseudogene EIF1P2 1 OTTHUMG00000007495.2 pseudo_consens +7349 chr1 HAVANA gene 38991223 39006059 2741.0 + 0 ENSG00000174574.15 protein_coding AKIRIN1 2 OTTHUMG00000007496.2 +7350 chr1 HAVANA gene 39026318 39034636 548.0 + 0 ENSG00000168653.10 protein_coding NDUFS5 2 OTTHUMG00000007497.1 +7351 chr1 ENSEMBL gene 39120940 39121043 104.0 - 0 ENSG00000206654.1 snRNA RNU6-608P 3 +7352 chr1 ENSEMBL gene 39154164 39154296 133.0 - 0 ENSG00000222378.1 rRNA_pseudogene RNA5SP44 3 +7353 chr1 HAVANA gene 39206512 39206957 446.0 + 0 ENSG00000270040.1 sense_intronic AL356055.1 2 OTTHUMG00000184011.1 overlapping_locus +7354 chr1 HAVANA gene 39249838 39257649 558.0 - 0 ENSG00000226438.1 antisense AL442071.1 2 OTTHUMG00000008348.1 +7355 chr1 HAVANA gene 39304294 39304898 288.0 - 0 ENSG00000217897.2 processed_pseudogene HSPE1P8 1 OTTHUMG00000008349.1 pseudo_consens +7356 chr1 HAVANA gene 39081316 39487177 43102.0 + 0 ENSG00000127603.25 protein_coding MACF1 1 OTTHUMG00000007754.14 overlapping_locus +7357 chr1 HAVANA gene 39514956 39516490 1535.0 + 0 ENSG00000237624.1 unprocessed_pseudogene OXCT2P1 1 OTTHUMG00000009250.1 pseudo_consens,overlapping_locus +7358 chr1 HAVANA gene 39491646 39525935 1692.0 + 0 ENSG00000183682.7 protein_coding BMP8A 2 OTTHUMG00000008394.1 overlapping_locus +7359 chr1 HAVANA gene 39522280 39559671 5416.0 - 0 ENSG00000243970.3 transcribed_unprocessed_pseudogene PPIEL 2 OTTHUMG00000008393.3 +7360 chr1 ENSEMBL gene 39567374 39567508 135.0 - 0 ENSG00000201457.1 snoRNA SNORA55 3 +7361 chr1 HAVANA gene 39565067 39573203 736.0 + 0 ENSG00000228060.2 antisense AL365277.1 2 OTTHUMG00000009098.2 +7362 chr1 HAVANA gene 39560816 39576790 6782.0 - 0 ENSG00000090621.13 protein_coding PABPC4 1 OTTHUMG00000009097.6 ncRNA_host +7363 chr1 HAVANA gene 39633416 39633903 304.0 + 0 ENSG00000225903.1 antisense AL035404.2 2 OTTHUMG00000037279.1 +7364 chr1 HAVANA gene 39624153 39639945 3661.0 - 0 ENSG00000163909.7 protein_coding HEYL 2 OTTHUMG00000000458.2 +7365 chr1 HAVANA gene 39659121 39672038 1107.0 - 0 ENSG00000116981.3 protein_coding NT5C1A 2 OTTHUMG00000009244.2 +7366 chr1 HAVANA gene 39678648 39691689 4962.0 - 0 ENSG00000116983.12 protein_coding HPCAL4 2 OTTHUMG00000009246.1 +7367 chr1 HAVANA gene 39718028 39718595 568.0 + 0 ENSG00000225333.6 processed_pseudogene AL035404.1 1 OTTHUMG00000000457.4 pseudo_consens,overlapping_locus +7368 chr1 ENSEMBL gene 39723566 39723627 62.0 - 0 ENSG00000252413.1 snRNA RNU7-121P 3 +7369 chr1 HAVANA gene 39692182 39763914 8071.0 + 0 ENSG00000084072.16 protein_coding PPIE 1 OTTHUMG00000009248.4 overlapping_locus +7370 chr1 HAVANA gene 39769523 39771348 1826.0 - 0 ENSG00000198754.5 protein_coding OXCT2 2 OTTHUMG00000009249.1 overlapping_locus +7371 chr1 HAVANA gene 39779969 39781418 1218.0 + 0 ENSG00000285905.1 lincRNA AL033527.6 2 OTTHUMG00000193264.1 +7372 chr1 HAVANA gene 39757182 39788861 4822.0 - 0 ENSG00000116985.11 protein_coding BMP8B 2 OTTHUMG00000009247.1 overlapping_locus +7373 chr1 HAVANA gene 39788976 39790171 1196.0 + 0 ENSG00000261798.1 antisense AL033527.3 2 OTTHUMG00000175804.1 +7374 chr1 HAVANA gene 39795843 39795996 154.0 - 0 ENSG00000229213.1 unprocessed_pseudogene AL033527.1 2 OTTHUMG00000057515.2 +7375 chr1 HAVANA gene 39799422 39809450 1744.0 + 0 ENSG00000284719.1 lincRNA AL033527.5 2 OTTHUMG00000192324.1 +7376 chr1 HAVANA gene 39801414 39817460 673.0 - 0 ENSG00000284678.1 lincRNA AL033527.4 2 OTTHUMG00000192325.1 +7377 chr1 ENSEMBL gene 39881566 39881678 113.0 - 0 ENSG00000202222.1 misc_RNA RF00019 3 +7378 chr1 HAVANA gene 39838110 39883511 6533.0 - 0 ENSG00000043514.16 protein_coding TRIT1 2 OTTHUMG00000009245.5 ncRNA_host +7379 chr1 HAVANA gene 39897745 39899098 785.0 + 0 ENSG00000236546.1 antisense AL033527.2 2 OTTHUMG00000009292.1 +7380 chr1 HAVANA gene 39895426 39902256 5063.0 - 0 ENSG00000116990.10 protein_coding MYCL 2 OTTHUMG00000009243.6 +7381 chr1 ENSEMBL gene 39944890 39944998 109.0 - 0 ENSG00000207356.1 misc_RNA RF00019 3 +7382 chr1 HAVANA gene 39962680 39963404 725.0 + 0 ENSG00000228477.1 processed_pseudogene AL663070.1 1 OTTHUMG00000009294.1 pseudo_consens,overlapping_locus +7383 chr1 HAVANA gene 39955112 39969968 4007.0 + 0 ENSG00000168389.17 protein_coding MFSD2A 2 OTTHUMG00000009293.2 overlapping_locus +7384 chr1 HAVANA gene 40040233 40072649 3814.0 + 0 ENSG00000131236.16 protein_coding CAP1 2 OTTHUMG00000004493.2 +7385 chr1 HAVANA gene 40071461 40097727 5088.0 - 0 ENSG00000131238.17 protein_coding PPT1 1 OTTHUMG00000004495.8 +7386 chr1 HAVANA gene 40132764 40133448 685.0 + 0 ENSG00000226745.2 processed_pseudogene AL512599.1 1 OTTHUMG00000004494.2 pseudo_consens +7387 chr1 ENSEMBL gene 40177843 40177949 107.0 + 0 ENSG00000207508.1 snRNA RNU6-1237P 3 +7388 chr1 HAVANA gene 40161373 40240921 6246.0 + 0 ENSG00000117000.8 protein_coding RLF 2 OTTHUMG00000005763.1 ncRNA_host +7389 chr1 HAVANA gene 40245947 40251691 889.0 + 0 ENSG00000188800.5 protein_coding TMCO2 2 OTTHUMG00000005764.1 +7390 chr1 HAVANA gene 40256427 40257967 1541.0 - 0 ENSG00000259943.1 antisense AL050341.2 2 OTTHUMG00000175805.2 +7391 chr1 HAVANA gene 40262672 40262984 313.0 - 0 ENSG00000231296.1 processed_pseudogene AL050341.1 1 OTTHUMG00000005765.1 pseudo_consens +7392 chr1 HAVANA gene 40258107 40294184 3572.0 + 0 ENSG00000084073.8 protein_coding ZMPSTE24 2 OTTHUMG00000005762.2 +7393 chr1 HAVANA gene 40300487 40317813 4217.0 - 0 ENSG00000049089.14 protein_coding COL9A2 2 OTTHUMG00000005761.6 +7394 chr1 HAVANA gene 40333078 40333557 480.0 - 0 ENSG00000227311.3 processed_pseudogene AL031985.2 1 OTTHUMG00000007299.2 pseudo_consens +7395 chr1 HAVANA gene 40364766 40365183 418.0 + 0 ENSG00000213172.3 processed_pseudogene AL031985.1 1 OTTHUMG00000007300.2 pseudo_consens,overlapping_locus +7396 chr1 HAVANA gene 40344850 40423326 3631.0 + 0 ENSG00000084070.11 protein_coding SMAP2 2 OTTHUMG00000007301.6 overlapping_locus +7397 chr1 HAVANA gene 40436199 40450039 673.0 - 0 ENSG00000284677.1 lincRNA AL031985.4 2 OTTHUMG00000192327.1 +7398 chr1 HAVANA gene 40450102 40463718 2386.0 + 0 ENSG00000187801.14 protein_coding ZFP69B 2 OTTHUMG00000007302.2 +7399 chr1 HAVANA gene 40464319 40466767 2449.0 + 0 ENSG00000260920.2 sense_overlapping AL031985.3 2 OTTHUMG00000175830.2 +7400 chr1 HAVANA gene 40473055 40474059 1005.0 + 0 ENSG00000279667.1 TEC AL603839.4 2 OTTHUMG00000175831.1 +7401 chr1 HAVANA gene 40477215 40496343 3248.0 + 0 ENSG00000187815.9 protein_coding ZFP69 2 OTTHUMG00000007303.1 +7402 chr1 HAVANA gene 40493157 40508661 605.0 - 0 ENSG00000238287.1 antisense AL603839.3 2 OTTHUMG00000007304.1 +7403 chr1 HAVANA gene 40514461 40515057 432.0 - 0 ENSG00000227278.1 antisense AL603839.1 2 OTTHUMG00000007306.1 +7404 chr1 HAVANA gene 40508741 40516556 3092.0 + 0 ENSG00000164002.11 protein_coding EXO5 2 OTTHUMG00000007305.3 +7405 chr1 HAVANA gene 40515754 40517174 546.0 - 0 ENSG00000238186.1 antisense AL603839.2 2 OTTHUMG00000007307.1 +7406 chr1 HAVANA gene 40531561 40548169 3039.0 + 0 ENSG00000117010.16 protein_coding ZNF684 2 OTTHUMG00000007359.5 +7407 chr1 HAVANA gene 40563534 40563659 126.0 + 0 ENSG00000236505.1 unprocessed_pseudogene AL356379.1 2 OTTHUMG00000007454.1 +7408 chr1 HAVANA gene 40593633 40594353 721.0 - 0 ENSG00000233910.1 processed_pseudogene GTF2F2P2 1 OTTHUMG00000007456.1 pseudo_consens +7409 chr1 HAVANA gene 40620679 40665657 7235.0 - 0 ENSG00000117016.9 protein_coding RIMS3 2 OTTHUMG00000007453.1 +7410 chr1 HAVANA gene 40669089 40687588 471.0 - 0 ENSG00000237899.1 lincRNA AL031289.1 2 OTTHUMG00000007457.1 +7411 chr1 HAVANA gene 40690380 40692066 1687.0 - 0 ENSG00000272145.1 antisense NFYC-AS1 2 OTTHUMG00000185712.1 +7412 chr1 ENSEMBL gene 40754355 40754446 92.0 + 0 ENSG00000198974.3 miRNA MIR30E 3 +7413 chr1 ENSEMBL gene 40757284 40757372 89.0 + 0 ENSG00000207962.1 miRNA MIR30C1 3 +7414 chr1 HAVANA gene 40691648 40771603 5990.0 + 0 ENSG00000066136.20 protein_coding NFYC 1 OTTHUMG00000007729.5 ncRNA_host +7415 chr1 ENSEMBL gene 40804846 40805141 296.0 + 0 ENSG00000264582.2 misc_RNA RN7SL326P 3 +7416 chr1 HAVANA gene 40783814 40840452 4381.0 + 0 ENSG00000117013.15 protein_coding KCNQ4 2 OTTHUMG00000007730.5 ncRNA_host +7417 chr1 HAVANA gene 40861051 40862366 1316.0 - 0 ENSG00000179862.6 protein_coding CITED4 2 OTTHUMG00000007728.1 +7418 chr1 HAVANA gene 40863914 40876670 471.0 + 0 ENSG00000229528.1 antisense AC119677.1 2 OTTHUMG00000007731.1 +7419 chr1 HAVANA gene 40938104 40939763 921.0 - 0 ENSG00000228940.1 unprocessed_pseudogene AL391730.1 1 OTTHUMG00000005715.1 pseudo_consens +7420 chr1 HAVANA gene 40942251 40942515 265.0 - 0 ENSG00000233118.2 processed_pseudogene UBE2V1P8 1 OTTHUMG00000005718.2 pseudo_consens +7421 chr1 HAVANA gene 40979335 41012565 5462.0 + 0 ENSG00000171793.14 protein_coding CTPS1 2 OTTHUMG00000005712.13 +7422 chr1 HAVANA gene 41015597 41023237 4310.0 - 0 ENSG00000171790.15 protein_coding SLFNL1 2 OTTHUMG00000005719.1 +7423 chr1 HAVANA gene 41014590 41043890 4800.0 + 0 ENSG00000281207.1 antisense SLFNL1-AS1 2 OTTHUMG00000189531.1 +7424 chr1 HAVANA gene 41098638 41099136 499.0 + 0 ENSG00000215893.3 processed_pseudogene RPL23AP17 1 OTTHUMG00000005717.2 pseudo_consens +7425 chr1 HAVANA gene 41027200 41242154 4447.0 - 0 ENSG00000010803.16 protein_coding SCMH1 2 OTTHUMG00000005720.3 +7426 chr1 HAVANA gene 41264550 41264862 313.0 - 0 ENSG00000213987.4 processed_pseudogene AC093151.1 1 OTTHUMG00000005711.2 pseudo_consens +7427 chr1 HAVANA gene 41242373 41284861 1468.0 + 0 ENSG00000235358.1 lincRNA AC093151.3 1 OTTHUMG00000005710.1 +7428 chr1 HAVANA gene 41375004 41375669 394.0 - 0 ENSG00000229901.1 antisense AC093151.2 1 OTTHUMG00000005714.1 +7429 chr1 HAVANA gene 41361922 41383590 2398.0 + 0 ENSG00000204060.7 protein_coding FOXO6 2 OTTHUMG00000005713.1 reference_genome_error +7430 chr1 ENSEMBL gene 41466937 41467028 92.0 - 0 ENSG00000252563.1 rRNA_pseudogene RNA5SP45 3 +7431 chr1 HAVANA gene 41478775 41484673 1639.0 - 0 ENSG00000127129.9 protein_coding EDN2 2 OTTHUMG00000006362.1 +7432 chr1 HAVANA gene 41535443 41535868 265.0 + 0 ENSG00000230881.1 antisense AL445933.2 2 OTTHUMG00000006360.1 +7433 chr1 HAVANA gene 41542069 41544310 2242.0 + 0 ENSG00000230638.4 processed_pseudogene AL445933.1 1 OTTHUMG00000057519.2 pseudo_consens +7434 chr1 HAVANA gene 41585306 41628816 81.0 - 0 ENSG00000284895.1 protein_coding AC119676.1 2 OTTHUMG00000006361.4 overlapping_locus +7435 chr1 HAVANA gene 41506365 42035925 14218.0 - 0 ENSG00000127124.15 protein_coding HIVEP3 2 OTTHUMG00000192539.3 +7436 chr1 HAVANA gene 42040597 42041729 1133.0 + 0 ENSG00000227538.1 processed_pseudogene HNRNPFP1 1 OTTHUMG00000006363.1 pseudo_consens +7437 chr1 HAVANA gene 42140635 42141391 454.0 + 0 ENSG00000228776.2 processed_pseudogene AC114492.1 1 OTTHUMG00000007025.2 pseudo_consens +7438 chr1 HAVANA gene 42153421 42155824 597.0 + 0 ENSG00000044012.3 protein_coding GUCA2B 2 OTTHUMG00000007024.1 +7439 chr1 HAVANA gene 42162691 42164718 569.0 - 0 ENSG00000197273.3 protein_coding GUCA2A 2 OTTHUMG00000007023.1 +7440 chr1 HAVANA gene 42176539 42335877 6893.0 - 0 ENSG00000198815.8 protein_coding FOXJ3 1 OTTHUMG00000007026.3 overlapping_locus +7441 chr1 HAVANA gene 42335386 42338376 661.0 - 0 ENSG00000227527.2 sense_overlapping AC096540.1 2 OTTHUMG00000007027.2 overlapping_locus +7442 chr1 HAVANA gene 42412398 42412794 397.0 - 0 ENSG00000235002.1 processed_pseudogene AL513331.1 1 OTTHUMG00000007336.1 pseudo_consens +7443 chr1 HAVANA gene 42380795 42422578 8981.0 + 0 ENSG00000177181.14 protein_coding RIMKLA 2 OTTHUMG00000007335.4 +7444 chr1 HAVANA gene 42430329 42456267 2195.0 - 0 ENSG00000066185.12 protein_coding ZMYND12 2 OTTHUMG00000007333.2 +7445 chr1 HAVANA gene 42456117 42473385 2590.0 + 0 ENSG00000127125.8 protein_coding PPCS 2 OTTHUMG00000007332.4 overlapping_locus +7446 chr1 HAVANA gene 42491739 42492493 755.0 + 0 ENSG00000230116.1 processed_pseudogene AL445669.1 1 OTTHUMG00000007432.1 pseudo_consens,overlapping_locus +7447 chr1 HAVANA gene 42500205 42500339 135.0 - 0 ENSG00000236876.3 processed_pseudogene TMSB4XP1 2 OTTHUMG00000007433.1 +7448 chr1 ENSEMBL gene 42569033 42569139 107.0 + 0 ENSG00000200254.1 snRNA RNU6-536P 3 +7449 chr1 HAVANA gene 42570970 42571390 421.0 + 0 ENSG00000236180.2 processed_pseudogene AL445669.2 1 OTTHUMG00000007521.2 pseudo_consens,overlapping_locus +7450 chr1 HAVANA gene 42463330 42654664 13504.0 + 0 ENSG00000186409.15 protein_coding CCDC30 2 OTTHUMG00000007334.9 ncRNA_host,overlapping_locus +7451 chr1 HAVANA gene 42658425 42676758 1444.0 + 0 ENSG00000171960.10 protein_coding PPIH 2 OTTHUMG00000007520.6 +7452 chr1 HAVANA gene 42678735 42681659 601.0 + 0 ENSG00000234917.2 lincRNA AC098484.2 2 OTTHUMG00000007522.2 +7453 chr1 HAVANA gene 42658687 42682160 2041.0 - 0 ENSG00000285728.1 antisense AC098484.4 2 OTTHUMG00000192821.1 +7454 chr1 HAVANA gene 42682427 42702349 1930.0 + 0 ENSG00000065978.18 protein_coding YBX1 2 OTTHUMG00000007523.6 +7455 chr1 HAVANA gene 42733093 42740254 3602.0 - 0 ENSG00000164007.10 protein_coding CLDN19 2 OTTHUMG00000007524.1 +7456 chr1 HAVANA gene 42746335 42767084 6766.0 - 0 ENSG00000117385.15 protein_coding P3H1 2 OTTHUMG00000007525.7 +7457 chr1 HAVANA gene 42775813 42776790 484.0 - 0 ENSG00000228452.1 antisense AC098484.1 2 OTTHUMG00000007569.1 +7458 chr1 HAVANA gene 42767269 42779488 5263.0 + 0 ENSG00000164008.15 protein_coding C1orf50 1 OTTHUMG00000191873.2 overlapping_locus +7459 chr1 HAVANA gene 42767292 42794493 1348.0 + 0 ENSG00000283580.3 protein_coding AC098484.3 2 OTTHUMG00000007568.9 overlapping_locus +7460 chr1 HAVANA gene 42785007 42816619 4373.0 + 0 ENSG00000274386.5 protein_coding TMEM269 2 OTTHUMG00000188150.3 overlapping_locus +7461 chr1 HAVANA gene 42807052 42817252 1208.0 - 0 ENSG00000177868.11 protein_coding SVBP 2 OTTHUMG00000007566.1 +7462 chr1 HAVANA gene 42817088 42844993 5756.0 + 0 ENSG00000164010.14 protein_coding ERMAP 2 OTTHUMG00000007619.2 +7463 chr1 HAVANA gene 42834681 42846422 1617.0 - 0 ENSG00000228192.7 antisense AL512353.1 2 OTTHUMG00000007621.1 +7464 chr1 HAVANA gene 42846573 42852477 2036.0 + 0 ENSG00000164011.17 protein_coding ZNF691 2 OTTHUMG00000007623.5 +7465 chr1 HAVANA gene 42886597 42888767 1962.0 - 0 ENSG00000233708.1 processed_pseudogene AL512353.2 1 OTTHUMG00000007625.1 pseudo_consens +7466 chr1 HAVANA gene 42891094 42892430 1326.0 - 0 ENSG00000237090.1 processed_pseudogene AL512353.3 2 OTTHUMG00000007624.1 +7467 chr1 HAVANA gene 42903232 42903912 681.0 + 0 ENSG00000225099.1 processed_pseudogene ATP6V1E1P1 1 OTTHUMG00000007618.1 pseudo_consens +7468 chr1 HAVANA gene 42952202 42952641 440.0 - 0 ENSG00000284138.1 processed_pseudogene ATP6V0CP4 2 OTTHUMG00000191967.2 +7469 chr1 HAVANA gene 42925375 42959176 4724.0 - 0 ENSG00000117394.21 protein_coding SLC2A1 2 OTTHUMG00000007657.11 +7470 chr1 HAVANA gene 42959065 42961864 852.0 - 0 ENSG00000283973.1 lincRNA AC099795.1 2 OTTHUMG00000191968.1 +7471 chr1 HAVANA gene 42959049 42983358 3364.0 + 0 ENSG00000227533.5 lincRNA SLC2A1-AS1 2 OTTHUMG00000007699.1 +7472 chr1 ENSEMBL gene 42991438 42991544 107.0 + 0 ENSG00000207256.1 snRNA RNU6-880P 3 +7473 chr1 ENSEMBL gene 43023549 43023637 89.0 - 0 ENSG00000283136.1 snRNA RF00026 3 +7474 chr1 HAVANA gene 43104086 43104497 412.0 + 0 ENSG00000277513.1 processed_pseudogene AL161637.1 2 OTTHUMG00000187524.1 +7475 chr1 HAVANA gene 43145153 43156396 843.0 + 0 ENSG00000186973.10 protein_coding FAM183A 1 OTTHUMG00000007286.4 +7476 chr1 ENSEMBL gene 43171652 43171712 61.0 - 0 ENSG00000284410.1 miRNA MIR6733 3 +7477 chr1 ENSEMBL gene 43196417 43196536 120.0 + 0 ENSG00000199240.1 rRNA_pseudogene RNA5SP46 3 +7478 chr1 HAVANA gene 43172149 43254358 5764.0 + 0 ENSG00000243710.7 protein_coding CFAP57 1 OTTHUMG00000007285.3 +7479 chr1 HAVANA gene 43164175 43270936 3561.0 - 0 ENSG00000117395.12 protein_coding EBNA1BP2 2 OTTHUMG00000007284.2 ncRNA_host +7480 chr1 HAVANA gene 43269994 43274002 2127.0 + 0 ENSG00000179178.10 protein_coding TMEM125 2 OTTHUMG00000007288.3 +7481 chr1 HAVANA gene 43281883 43285617 1516.0 - 0 ENSG00000253313.5 protein_coding C1orf210 2 OTTHUMG00000007289.2 +7482 chr1 HAVANA gene 43300993 43323108 6694.0 + 0 ENSG00000066056.13 protein_coding TIE1 2 OTTHUMG00000007282.4 +7483 chr1 HAVANA gene 43337849 43352772 2086.0 + 0 ENSG00000117400.17 protein_coding MPL 2 OTTHUMG00000007429.5 +7484 chr1 HAVANA gene 43354684 43358658 661.0 - 0 ENSG00000234694.1 antisense AL139289.2 2 OTTHUMG00000007424.1 +7485 chr1 HAVANA gene 43358955 43363203 2038.0 + 0 ENSG00000117399.13 protein_coding CDC20 2 OTTHUMG00000007420.2 +7486 chr1 ENSEMBL gene 43364648 43364715 68.0 - 0 ENSG00000283836.1 miRNA MIR6734 3 +7487 chr1 HAVANA gene 43363397 43368074 2507.0 - 0 ENSG00000066322.14 protein_coding ELOVL1 2 OTTHUMG00000007422.2 ncRNA_host +7488 chr1 HAVANA gene 43385113 43389155 731.0 + 0 ENSG00000229431.1 antisense AL139289.1 2 OTTHUMG00000037499.1 +7489 chr1 HAVANA gene 43383917 43389808 2704.0 - 0 ENSG00000159479.16 protein_coding MED8 1 OTTHUMG00000007421.6 +7490 chr1 ENSEMBL gene 43448539 43448611 73.0 + 0 ENSG00000274975.1 miRNA MIR6735 3 +7491 chr1 HAVANA gene 43447776 43448644 699.0 - 0 ENSG00000229372.1 antisense SZT2-AS1 2 OTTHUMG00000007428.1 +7492 chr1 HAVANA gene 43451003 43453989 2740.0 - 0 ENSG00000178922.16 protein_coding HYI 2 OTTHUMG00000007502.3 +7493 chr1 HAVANA gene 43389882 43454247 25040.0 + 0 ENSG00000198198.16 protein_coding SZT2 2 OTTHUMG00000007423.16 ncRNA_host,overlapping_locus +7494 chr1 HAVANA gene 43453927 43456995 545.0 + 0 ENSG00000229348.1 3prime_overlapping_ncRNA HYI-AS1 2 OTTHUMG00000007503.1 overlapping_locus +7495 chr1 HAVANA gene 43525187 43623666 10712.0 + 0 ENSG00000142949.16 protein_coding PTPRF 2 OTTHUMG00000007501.5 +7496 chr1 HAVANA gene 43650158 43705515 5172.0 + 0 ENSG00000066135.12 protein_coding KDM4A 2 OTTHUMG00000007560.3 overlapping_locus +7497 chr1 HAVANA gene 43699765 43708138 1931.0 - 0 ENSG00000236200.5 antisense KDM4A-AS1 2 OTTHUMG00000007557.1 +7498 chr1 ENSEMBL gene 43716467 43716556 90.0 + 0 ENSG00000283414.1 snRNA RF00026 3 +7499 chr1 HAVANA gene 43709392 43727343 469.0 - 0 ENSG00000229444.1 antisense AL451062.1 2 OTTHUMG00000007703.1 +7500 chr1 HAVANA gene 43743471 43743741 271.0 + 0 ENSG00000233674.2 processed_pseudogene AL451062.2 1 OTTHUMG00000007559.2 pseudo_consens,overlapping_locus +7501 chr1 ENSEMBL gene 43838622 43838683 62.0 + 0 ENSG00000283477.1 miRNA MIR6079 3 +7502 chr1 HAVANA gene 43850300 43851611 1312.0 - 0 ENSG00000224751.2 processed_pseudogene SHMT1P1 1 OTTHUMG00000007558.2 pseudo_consens +7503 chr1 HAVANA gene 43650149 43931014 4037.0 + 0 ENSG00000284989.1 protein_coding AL451062.3 2 OTTHUMG00000192482.1 ncRNA_host,overlapping_locus +7504 chr1 HAVANA gene 43705824 43931165 4443.0 + 0 ENSG00000126091.20 protein_coding ST3GAL3 1 OTTHUMG00000007561.18 ncRNA_host,overlapping_locus +7505 chr1 HAVANA gene 43933320 43937241 2658.0 + 0 ENSG00000117407.16 protein_coding ARTN 2 OTTHUMG00000007705.3 +7506 chr1 HAVANA gene 43944370 43946551 557.0 - 0 ENSG00000237950.1 antisense AL357079.1 1 OTTHUMG00000007704.1 +7507 chr1 HAVANA gene 43946939 43968022 5083.0 + 0 ENSG00000117408.10 protein_coding IPO13 2 OTTHUMG00000008297.2 +7508 chr1 HAVANA gene 43970000 43973369 2930.0 + 0 ENSG00000132768.13 protein_coding DPH2 1 OTTHUMG00000008295.2 +7509 chr1 HAVANA gene 43968351 43974821 2044.0 - 0 ENSG00000285649.1 antisense AL357079.2 2 OTTHUMG00000192656.1 +7510 chr1 HAVANA gene 43974487 43978295 3535.0 + 0 ENSG00000117410.13 protein_coding ATP6V0B 2 OTTHUMG00000008298.3 +7511 chr1 HAVANA gene 43978943 43991170 3772.0 + 0 ENSG00000117411.16 protein_coding B4GALT2 2 OTTHUMG00000008296.1 +7512 chr1 HAVANA gene 43991359 43996528 3554.0 + 0 ENSG00000159214.12 protein_coding CCDC24 2 OTTHUMG00000008299.4 +7513 chr1 HAVANA gene 43991500 44031467 5159.0 - 0 ENSG00000196517.11 protein_coding SLC6A9 1 OTTHUMG00000008294.3 +7514 chr1 HAVANA gene 44087958 44088477 520.0 - 0 ENSG00000227163.2 processed_pseudogene AL139220.1 1 OTTHUMG00000008302.2 pseudo_consens +7515 chr1 HAVANA gene 44103306 44104703 1398.0 - 0 ENSG00000271647.1 processed_pseudogene KRT8P47 1 OTTHUMG00000184285.3 pseudo_consens +7516 chr1 HAVANA gene 44030443 44115913 7999.0 + 0 ENSG00000230615.6 lincRNA AL139220.2 2 OTTHUMG00000008300.5 +7517 chr1 ENSEMBL gene 44117098 44117397 300.0 - 0 ENSG00000239560.3 misc_RNA RN7SL479P 3 +7518 chr1 HAVANA gene 44122153 44122512 360.0 - 0 ENSG00000233514.1 processed_pseudogene AL356653.1 2 OTTHUMG00000009626.1 +7519 chr1 HAVANA gene 44118850 44135140 3131.0 + 0 ENSG00000171872.4 protein_coding KLF17 2 OTTHUMG00000009664.3 +7520 chr1 HAVANA gene 44137821 44141631 3159.0 - 0 ENSG00000283039.1 protein_coding KLF18 2 OTTHUMG00000007489.5 +7521 chr1 HAVANA gene 44150594 44151753 1160.0 - 0 ENSG00000226804.4 processed_pseudogene AL359839.1 2 OTTHUMG00000007490.3 +7522 chr1 ENSEMBL gene 44153385 44153480 96.0 - 0 ENSG00000200171.1 misc_RNA RF00019 3 +7523 chr1 HAVANA gene 44155028 44155301 274.0 - 0 ENSG00000238037.1 processed_pseudogene OOSP1P1 2 OTTHUMG00000007491.2 +7524 chr1 HAVANA gene 44172506 44172719 214.0 - 0 ENSG00000227994.1 processed_pseudogene AL035417.1 2 OTTHUMG00000007576.2 +7525 chr1 HAVANA gene 44187943 44189049 796.0 - 0 ENSG00000271329.1 processed_pseudogene AL035417.2 1 OTTHUMG00000184286.2 pseudo_consens +7526 chr1 HAVANA gene 44213455 44220681 5599.0 + 0 ENSG00000178028.13 protein_coding DMAP1 2 OTTHUMG00000007577.4 +7527 chr1 HAVANA gene 44243408 44244273 619.0 - 0 ENSG00000233602.1 sense_intronic ERI3-IT1 2 OTTHUMG00000037293.1 overlapping_locus +7528 chr1 HAVANA gene 44221070 44355260 2642.0 - 0 ENSG00000117419.15 protein_coding ERI3 2 OTTHUMG00000007637.6 overlapping_locus +7529 chr1 ENSEMBL gene 44390722 44390823 102.0 + 0 ENSG00000199385.1 snRNA RNU6-369P 3 +7530 chr1 ENSEMBL gene 44545493 44545552 60.0 + 0 ENSG00000263381.1 miRNA MIR5584 3 +7531 chr1 HAVANA gene 44405194 44651724 9687.0 + 0 ENSG00000187147.17 protein_coding RNF220 2 OTTHUMG00000007697.7 ncRNA_host +7532 chr1 HAVANA gene 44635238 44674555 3635.0 - 0 ENSG00000126106.13 protein_coding TMEM53 2 OTTHUMG00000007833.2 +7533 chr1 ENSEMBL gene 44721786 44721902 117.0 - 0 ENSG00000199377.1 snRNA RNU5F-1 3 +7534 chr1 HAVANA gene 44674692 44725591 3166.0 + 0 ENSG00000198520.11 protein_coding ARMH1 1 OTTHUMG00000007834.8 +7535 chr1 ENSEMBL gene 44731055 44731170 116.0 - 0 ENSG00000200169.1 snRNA RNU5D-1 3 +7536 chr1 HAVANA gene 44739818 44767767 3646.0 + 0 ENSG00000142945.12 protein_coding KIF2C 2 OTTHUMG00000008416.6 +7537 chr1 HAVANA gene 44759037 44775810 765.0 - 0 ENSG00000225721.5 antisense AL592166.1 2 OTTHUMG00000008489.1 +7538 chr1 ENSEMBL gene 44775864 44775943 80.0 + 0 ENSG00000264294.1 snoRNA SNORD55 3 +7539 chr1 ENSEMBL gene 44776490 44776593 104.0 + 0 ENSG00000200913.1 snoRNA SNORD46 3 +7540 chr1 ENSEMBL gene 44777843 44777912 70.0 + 0 ENSG00000202031.1 snoRNA SNORD38A 3 +7541 chr1 ENSEMBL gene 44778390 44778456 67.0 + 0 ENSG00000207421.1 snoRNA SNORD38B 3 +7542 chr1 ENSEMBL gene 44778390 44778458 69.0 + 0 ENSG00000281859.1 snoRNA SNORD38B 3 +7543 chr1 HAVANA gene 44775251 44778779 2847.0 + 0 ENSG00000142937.11 protein_coding RPS8 2 OTTHUMG00000008494.1 ncRNA_host +7544 chr1 HAVANA gene 44780331 44780715 385.0 - 0 ENSG00000234093.3 processed_pseudogene RPS15AP11 1 OTTHUMG00000008492.2 pseudo_consens +7545 chr1 HAVANA gene 44783585 44787705 2047.0 - 0 ENSG00000142959.4 protein_coding BEST4 2 OTTHUMG00000008488.1 +7546 chr1 HAVANA gene 44800225 44805990 3479.0 + 0 ENSG00000173846.12 protein_coding PLK3 2 OTTHUMG00000008491.2 +7547 chr1 HAVANA gene 44805913 44806675 763.0 - 0 ENSG00000188396.3 protein_coding TCTEX1D4 2 OTTHUMG00000008586.1 +7548 chr1 HAVANA gene 44808482 44815585 3520.0 + 0 ENSG00000222009.8 protein_coding BTBD19 2 OTTHUMG00000008493.3 +7549 chr1 ENSEMBL gene 44819883 44819997 115.0 - 0 ENSG00000202444.1 snRNA RNU5E-6P 3 +7550 chr1 HAVANA gene 44819844 44843063 5149.0 - 0 ENSG00000117425.13 protein_coding PTCH2 2 OTTHUMG00000008490.4 ncRNA_host +7551 chr1 HAVANA gene 44843921 44844082 162.0 - 0 ENSG00000226499.1 processed_pseudogene AL136380.1 2 OTTHUMG00000008588.1 +7552 chr1 ENSEMBL gene 44932323 44932431 109.0 + 0 ENSG00000253039.1 rRNA_pseudogene RNA5SP47 3 +7553 chr1 HAVANA gene 44958557 44959395 839.0 + 0 ENSG00000229815.1 processed_pseudogene CCNB1IP1P1 1 OTTHUMG00000008582.1 pseudo_consens +7554 chr1 HAVANA gene 44850522 44986722 3411.0 - 0 ENSG00000070785.16 protein_coding EIF2B3 2 OTTHUMG00000008585.4 +7555 chr1 HAVANA gene 44988234 44988725 492.0 - 0 ENSG00000232369.1 processed_pseudogene PPIAP35 1 OTTHUMG00000008583.1 pseudo_consens,overlapping_locus +7556 chr1 HAVANA gene 44988705 44991834 3130.0 - 0 ENSG00000268949.1 processed_pseudogene MRPS17P1 2 OTTHUMG00000008584.2 overlapping_locus +7557 chr1 HAVANA gene 45002540 45011329 5077.0 - 0 ENSG00000126107.14 protein_coding HECTD3 2 OTTHUMG00000008587.1 +7558 chr1 HAVANA gene 45012147 45015575 2908.0 + 0 ENSG00000126088.13 protein_coding UROD 2 OTTHUMG00000008949.4 +7559 chr1 HAVANA gene 45069977 45070429 453.0 - 0 ENSG00000234315.1 processed_pseudogene OSTCP5 1 OTTHUMG00000008966.1 pseudo_consens,overlapping_locus +7560 chr1 HAVANA gene 45303910 45305619 1710.0 + 0 ENSG00000281912.1 lincRNA LINC01144 2 OTTHUMG00000189536.1 +7561 chr1 HAVANA gene 45016399 45306209 6046.0 - 0 ENSG00000162415.6 protein_coding ZSWIM5 2 OTTHUMG00000008950.2 overlapping_locus +7562 chr1 HAVANA gene 45326905 45328533 1629.0 + 0 ENSG00000186603.5 protein_coding HPDL 2 OTTHUMG00000007681.1 +7563 chr1 HAVANA gene 45329163 45340470 3909.0 - 0 ENSG00000132781.17 protein_coding MUTYH 1 OTTHUMG00000007682.6 +7564 chr1 HAVANA gene 45339670 45343975 2742.0 + 0 ENSG00000132773.11 protein_coding TOE1 2 OTTHUMG00000007678.2 +7565 chr1 HAVANA gene 45415020 45415344 325.0 + 0 ENSG00000236872.1 processed_pseudogene PPIAP36 1 OTTHUMG00000007679.1 pseudo_consens +7566 chr1 HAVANA gene 45343883 45491166 3322.0 - 0 ENSG00000070759.16 protein_coding TESK2 2 OTTHUMG00000007680.2 +7567 chr1 HAVANA gene 45493866 45500079 2757.0 - 0 ENSG00000280670.2 protein_coding CCDC163 2 OTTHUMG00000007741.9 +7568 chr1 HAVANA gene 45500053 45513382 5296.0 + 0 ENSG00000132763.14 protein_coding MMACHC 1 OTTHUMG00000007742.5 +7569 chr1 HAVANA gene 45511036 45523047 1522.0 - 0 ENSG00000117450.13 protein_coding PRDX1 2 OTTHUMG00000007738.6 +7570 chr1 HAVANA gene 45530927 45532139 598.0 + 0 ENSG00000234379.1 unprocessed_pseudogene HMGB1P48 1 OTTHUMG00000007743.1 pseudo_consens +7571 chr1 HAVANA gene 45550543 45570049 3121.0 + 0 ENSG00000117448.13 protein_coding AKR1A1 1 OTTHUMG00000007740.4 +7572 chr1 ENSEMBL gene 45580892 45580996 96.0 - 0 ENSG00000281133.1 pseudogene AL355480.3 3 +7573 chr1 ENSEMBL gene 45581219 45581321 99.0 - 0 ENSG00000280836.1 pseudogene AL355480.1 3 +7574 chr1 ENSEMBL gene 45592722 45592814 84.0 - 0 ENSG00000281112.1 pseudogene AL355480.2 3 +7575 chr1 ENSEMBL gene 45605657 45605730 69.0 - 0 ENSG00000281825.1 pseudogene AL355480.4 3 +7576 chr1 HAVANA gene 45583846 45618904 8304.0 + 0 ENSG00000132780.16 protein_coding NASP 1 OTTHUMG00000007826.4 +7577 chr1 HAVANA gene 45620044 45624057 3323.0 - 0 ENSG00000159588.14 protein_coding CCDC17 2 OTTHUMG00000007822.7 +7578 chr1 HAVANA gene 45645816 45646197 382.0 - 0 ENSG00000225447.1 processed_pseudogene RPS15AP10 1 OTTHUMG00000040992.1 pseudo_consens,overlapping_locus +7579 chr1 HAVANA gene 45651039 45651826 788.0 - 0 ENSG00000234329.1 processed_pseudogene AL604028.2 1 OTTHUMG00000040991.1 pseudo_consens,overlapping_locus +7580 chr1 HAVANA gene 45627304 45688113 7433.0 - 0 ENSG00000159592.10 protein_coding GPBP1L1 2 OTTHUMG00000040990.1 overlapping_locus +7581 chr1 HAVANA gene 45687214 45694443 2439.0 + 0 ENSG00000159596.6 protein_coding TMEM69 2 OTTHUMG00000040993.1 +7582 chr1 HAVANA gene 45694684 45697075 598.0 - 0 ENSG00000230896.1 sense_intronic AL604028.1 2 OTTHUMG00000085067.1 overlapping_locus +7583 chr1 HAVANA gene 45694324 45750650 3705.0 - 0 ENSG00000197429.10 protein_coding IPP 2 OTTHUMG00000008004.3 overlapping_locus +7584 chr1 HAVANA gene 45781277 45781957 681.0 + 0 ENSG00000236111.5 processed_pseudogene AL603882.1 1 OTTHUMG00000041627.1 pseudo_consens +7585 chr1 HAVANA gene 45846994 45847594 601.0 - 0 ENSG00000232467.2 processed_pseudogene TMA16P2 1 OTTHUMG00000008005.2 pseudo_consens +7586 chr1 HAVANA gene 45786987 46036124 7877.0 + 0 ENSG00000086015.20 protein_coding MAST2 2 OTTHUMG00000008007.5 +7587 chr1 HAVANA gene 46046818 46048368 649.0 + 0 ENSG00000226957.1 antisense AL358075.1 2 OTTHUMG00000008097.1 +7588 chr1 HAVANA gene 46104950 46105175 226.0 + 0 ENSG00000233114.2 processed_pseudogene AL358075.3 1 OTTHUMG00000008095.2 pseudo_consens +7589 chr1 HAVANA gene 46040140 46133036 7410.0 - 0 ENSG00000117461.14 protein_coding PIK3R3 2 OTTHUMG00000008096.3 overlapping_locus +7590 chr1 HAVANA gene 46134531 46139081 339.0 + 0 ENSG00000227857.2 antisense AL358075.2 2 OTTHUMG00000008098.1 +7591 chr1 HAVANA gene 46175486 46176478 395.0 - 0 ENSG00000250719.1 protein_coding AL672043.1 1 OTTHUMG00000007603.2 overlapping_locus +7592 chr1 HAVANA gene 46043661 46176488 1553.0 - 0 ENSG00000278139.1 protein_coding AL358075.4 2 OTTHUMG00000186753.1 overlapping_locus +7593 chr1 HAVANA gene 46175073 46185958 2366.0 + 0 ENSG00000117472.9 protein_coding TSPAN1 2 OTTHUMG00000007602.1 +7594 chr1 HAVANA gene 46188682 46220305 6198.0 - 0 ENSG00000085998.13 protein_coding POMGNT1 2 OTTHUMG00000007604.2 +7595 chr1 HAVANA gene 46203334 46221261 1854.0 + 0 ENSG00000171357.5 protein_coding LURAP1 2 OTTHUMG00000007605.1 +7596 chr1 HAVANA gene 46247688 46278473 3212.0 + 0 ENSG00000085999.11 protein_coding RAD54L 1 OTTHUMG00000007772.5 +7597 chr1 HAVANA gene 46261196 46303608 8606.0 - 0 ENSG00000132128.16 protein_coding LRRC41 2 OTTHUMG00000007810.7 +7598 chr1 HAVANA gene 46303631 46316776 1408.0 + 0 ENSG00000173660.11 protein_coding UQCRH 2 OTTHUMG00000007813.3 +7599 chr1 HAVANA gene 46340177 46365152 8468.0 + 0 ENSG00000117481.10 protein_coding NSUN4 2 OTTHUMG00000007808.4 +7600 chr1 HAVANA gene 46370586 46370955 370.0 + 0 ENSG00000225779.1 processed_pseudogene AL122001.1 2 OTTHUMG00000007809.1 +7601 chr1 HAVANA gene 46394265 46413848 2776.0 + 0 ENSG00000117480.15 protein_coding FAAH 2 OTTHUMG00000007811.2 +7602 chr1 HAVANA gene 46446673 46451281 1398.0 - 0 ENSG00000224863.2 processed_transcript LINC01398 2 OTTHUMG00000007814.2 +7603 chr1 HAVANA gene 46432129 46482493 2476.0 + 0 ENSG00000232022.7 transcribed_unprocessed_pseudogene FAAHP1 2 OTTHUMG00000007812.4 +7604 chr1 HAVANA gene 46506996 46514226 2896.0 + 0 ENSG00000197587.10 protein_coding DMBX1 2 OTTHUMG00000007982.2 +7605 chr1 HAVANA gene 46532166 46543969 1633.0 - 0 ENSG00000282881.2 protein_coding AL136373.1 2 OTTHUMG00000191600.2 +7606 chr1 HAVANA gene 46545644 46551527 2810.0 - 0 ENSG00000162456.9 protein_coding KNCN 2 OTTHUMG00000007987.3 +7607 chr1 HAVANA gene 46538696 46570255 2445.0 + 0 ENSG00000269956.1 antisense MKNK1-AS1 2 OTTHUMG00000184075.1 +7608 chr1 HAVANA gene 46557408 46616843 8070.0 - 0 ENSG00000079277.20 protein_coding MKNK1 1 OTTHUMG00000007983.7 overlapping_locus +7609 chr1 HAVANA gene 46607715 46616891 5916.0 - 0 ENSG00000142961.14 protein_coding MOB3C 2 OTTHUMG00000007989.2 overlapping_locus +7610 chr1 HAVANA gene 46665910 46666375 466.0 - 0 ENSG00000233647.2 processed_pseudogene NENFP1 1 OTTHUMG00000007990.2 pseudo_consens,overlapping_locus +7611 chr1 HAVANA gene 46668855 46673594 1490.0 + 0 ENSG00000186118.8 protein_coding TEX38 1 OTTHUMG00000007991.3 +7612 chr1 HAVANA gene 46632737 46673867 5677.0 - 0 ENSG00000123472.12 protein_coding ATPAF1 1 OTTHUMG00000007988.4 overlapping_locus +7613 chr1 HAVANA gene 46674036 46692098 584.0 + 0 ENSG00000228237.5 antisense EFCAB14-AS1 1 OTTHUMG00000007993.1 +7614 chr1 HAVANA gene 46675159 46719064 6285.0 - 0 ENSG00000159658.10 protein_coding EFCAB14 2 OTTHUMG00000007992.4 +7615 chr1 HAVANA gene 46742329 46743133 805.0 + 0 ENSG00000236476.2 processed_pseudogene AL593856.1 1 OTTHUMG00000007994.2 pseudo_consens +7616 chr1 HAVANA gene 46757838 46819413 3466.0 + 0 ENSG00000142973.13 protein_coding CYP4B1 1 OTTHUMG00000007984.8 +7617 chr1 HAVANA gene 46891639 46892830 1192.0 + 0 ENSG00000238145.2 processed_pseudogene AL731892.1 1 OTTHUMG00000008021.2 pseudo_consens +7618 chr1 HAVANA gene 46843095 46900437 1598.0 - 0 ENSG00000154198.14 transcribed_unprocessed_pseudogene CYP4Z2P 2 OTTHUMG00000008024.2 +7619 chr1 HAVANA gene 46929177 46941484 3890.0 - 0 ENSG00000187048.12 protein_coding CYP4A11 2 OTTHUMG00000008020.3 +7620 chr1 HAVANA gene 46967679 46967874 196.0 - 0 ENSG00000259832.1 unprocessed_pseudogene CYP4A26P 2 OTTHUMG00000172700.1 +7621 chr1 HAVANA gene 46994382 46994502 121.0 - 0 ENSG00000261196.1 unprocessed_pseudogene CYP4A43P 2 OTTHUMG00000172701.1 +7622 chr1 HAVANA gene 47000898 47001087 190.0 - 0 ENSG00000261593.1 unprocessed_pseudogene CYP4A27P 2 OTTHUMG00000172702.1 +7623 chr1 HAVANA gene 47002995 47003148 154.0 - 0 ENSG00000261290.1 unprocessed_pseudogene CYP4A44P 2 OTTHUMG00000172696.1 +7624 chr1 HAVANA gene 47023568 47050751 2548.0 + 0 ENSG00000186377.7 protein_coding CYP4X1 2 OTTHUMG00000008017.1 +7625 chr1 HAVANA gene 47074778 47075979 1202.0 - 0 ENSG00000225154.2 processed_pseudogene AL450996.1 1 OTTHUMG00000008018.2 pseudo_consens +7626 chr1 HAVANA gene 47067488 47118319 1996.0 + 0 ENSG00000186160.4 protein_coding CYP4Z1 2 OTTHUMG00000008019.1 +7627 chr1 HAVANA gene 47137435 47149741 3859.0 + 0 ENSG00000162365.11 protein_coding CYP4A22 2 OTTHUMG00000007845.2 +7628 chr1 HAVANA gene 47164510 47165920 671.0 - 0 ENSG00000225514.1 transcribed_processed_pseudogene MTND1P34 2 OTTHUMG00000007846.1 overlapping_locus +7629 chr1 HAVANA gene 47096653 47179271 921.0 - 0 ENSG00000225506.2 lincRNA CYP4A22-AS1 2 OTTHUMG00000007848.2 overlapping_locus +7630 chr1 HAVANA gene 47179250 47180339 661.0 + 0 ENSG00000224805.2 antisense LINC00853 2 OTTHUMG00000007850.2 +7631 chr1 HAVANA gene 47183593 47191044 1438.0 - 0 ENSG00000162366.7 protein_coding PDZK1IP1 2 OTTHUMG00000007852.3 +7632 chr1 HAVANA gene 47225797 47230750 4036.0 + 0 ENSG00000226252.1 antisense AL135960.1 2 OTTHUMG00000007844.1 +7633 chr1 HAVANA gene 47216290 47232220 5700.0 - 0 ENSG00000162367.11 protein_coding TAL1 2 OTTHUMG00000007847.3 +7634 chr1 HAVANA gene 47250139 47314147 7291.0 - 0 ENSG00000123473.15 protein_coding STIL 1 OTTHUMG00000007851.4 +7635 chr1 HAVANA gene 47333797 47378839 3844.0 + 0 ENSG00000162368.13 protein_coding CMPK1 2 OTTHUMG00000007849.4 +7636 chr1 HAVANA gene 47380928 47408477 483.0 - 0 ENSG00000225762.1 antisense LINC01389 2 OTTHUMG00000007965.2 +7637 chr1 HAVANA gene 47416072 47418052 1981.0 + 0 ENSG00000186790.5 protein_coding FOXE3 2 OTTHUMG00000007954.1 +7638 chr1 HAVANA gene 47432133 47434641 2509.0 - 0 ENSG00000237424.1 lincRNA FOXD2-AS1 2 OTTHUMG00000007949.2 +7639 chr1 HAVANA gene 47436017 47440691 4675.0 + 0 ENSG00000186564.5 protein_coding FOXD2 2 OTTHUMG00000007950.1 +7640 chr1 HAVANA gene 47483698 47484162 465.0 - 0 ENSG00000271355.1 processed_pseudogene AL356458.1 1 OTTHUMG00000184287.1 pseudo_consens +7641 chr1 HAVANA gene 47497894 47498341 448.0 - 0 ENSG00000229554.2 processed_pseudogene RPL21P24 1 OTTHUMG00000007964.2 pseudo_consens +7642 chr1 HAVANA gene 47550196 47550753 242.0 + 0 ENSG00000227883.1 processed_pseudogene ATP6V0E1P4 1 OTTHUMG00000007966.1 pseudo_consens +7643 chr1 HAVANA gene 47688463 47703383 815.0 + 0 ENSG00000227947.1 lincRNA LINC01738 2 OTTHUMG00000007956.1 +7644 chr1 HAVANA gene 47761132 47765547 407.0 - 0 ENSG00000223814.1 lincRNA AL691459.1 2 OTTHUMG00000007958.1 overlapping_locus +7645 chr1 HAVANA gene 47818066 47820237 1807.0 + 0 ENSG00000225028.1 lincRNA AC096541.1 2 OTTHUMG00000007961.1 +7646 chr1 HAVANA gene 47760528 47996895 7034.0 - 0 ENSG00000269113.3 protein_coding TRABD2B 2 OTTHUMG00000007960.3 overlapping_locus +7647 chr1 HAVANA gene 48078787 48082196 292.0 - 0 ENSG00000231413.1 lincRNA AL356289.2 2 OTTHUMG00000008050.1 +7648 chr1 HAVANA gene 48089368 48089634 267.0 + 0 ENSG00000237180.1 processed_pseudogene CYP46A4P 1 OTTHUMG00000007962.1 pseudo_consens,overlapping_locus +7649 chr1 HAVANA gene 48050659 48091736 1477.0 + 0 ENSG00000226133.6 lincRNA AL356289.1 2 OTTHUMG00000007952.2 overlapping_locus +7650 chr1 HAVANA gene 48102068 48104736 2669.0 + 0 ENSG00000279096.2 TEC AL356289.3 2 OTTHUMG00000192115.1 +7651 chr1 HAVANA gene 48096092 48182428 2010.0 - 0 ENSG00000242267.6 transcribed_unprocessed_pseudogene SKINT1L 2 OTTHUMG00000007955.4 +7652 chr1 HAVANA gene 48172972 48206857 651.0 + 0 ENSG00000223720.2 lincRNA AL109659.1 2 OTTHUMG00000007957.2 +7653 chr1 HAVANA gene 48227888 48229561 1674.0 - 0 ENSG00000272491.1 antisense AL109659.2 2 OTTHUMG00000185781.1 +7654 chr1 HAVANA gene 48222685 48248644 4535.0 + 0 ENSG00000117834.12 protein_coding SLC5A9 2 OTTHUMG00000007959.6 +7655 chr1 HAVANA gene 48262230 48263179 950.0 - 0 ENSG00000279214.1 TEC AL109659.3 2 OTTHUMG00000191430.1 +7656 chr1 HAVANA gene 48325080 48326123 1044.0 - 0 ENSG00000224986.2 processed_pseudogene PPP1R8P1 1 OTTHUMG00000007792.2 pseudo_consens,overlapping_locus +7657 chr1 ENSEMBL gene 48344209 48344315 107.0 + 0 ENSG00000206700.1 snRNA RNU6-723P 3 +7658 chr1 HAVANA gene 48435967 48437223 1257.0 + 0 ENSG00000235105.1 processed_pseudogene AL356968.2 2 OTTHUMG00000007790.1 +7659 chr1 ENSEMBL gene 48447936 48448042 107.0 + 0 ENSG00000223175.1 snRNA RNU4-61P 3 +7660 chr1 HAVANA gene 48295372 48472208 5939.0 - 0 ENSG00000132122.11 protein_coding SPATA6 2 OTTHUMG00000007794.4 overlapping_locus +7661 chr1 HAVANA gene 48497263 48497736 474.0 - 0 ENSG00000232514.1 processed_pseudogene AL356968.1 1 OTTHUMG00000007791.1 pseudo_consens +7662 chr1 HAVANA gene 48727523 48776969 2138.0 - 0 ENSG00000162373.12 protein_coding BEND5 2 OTTHUMG00000008153.3 overlapping_locus +7663 chr1 HAVANA gene 49025595 49187585 793.0 + 0 ENSG00000229846.2 antisense AC099788.1 2 OTTHUMG00000008154.2 +7664 chr1 HAVANA gene 49257411 49269285 566.0 + 0 ENSG00000230114.1 antisense AL590432.1 2 OTTHUMG00000008156.1 +7665 chr1 HAVANA gene 49374201 49472085 514.0 - 0 ENSG00000225623.1 sense_intronic AGBL4-IT1 2 OTTHUMG00000008155.1 overlapping_locus +7666 chr1 HAVANA gene 49691262 49691523 262.0 - 0 ENSG00000237478.2 processed_pseudogene AL390023.1 2 OTTHUMG00000007800.2 overlapping_locus +7667 chr1 HAVANA gene 49841821 49846400 1966.0 + 0 ENSG00000215887.5 unprocessed_pseudogene ZNF859P 1 OTTHUMG00000008273.2 pseudo_consens +7668 chr1 HAVANA gene 49994318 49996218 1901.0 + 0 ENSG00000279324.1 TEC AL645730.1 2 OTTHUMG00000187049.1 +7669 chr1 HAVANA gene 50017092 50017503 412.0 + 0 ENSG00000233595.2 processed_pseudogene MTND2P29 2 OTTHUMG00000008274.2 +7670 chr1 HAVANA gene 48532855 50023913 7462.0 - 0 ENSG00000186094.16 protein_coding AGBL4 2 OTTHUMG00000007793.5 overlapping_locus +7671 chr1 HAVANA gene 50114937 50115282 346.0 + 0 ENSG00000230828.1 processed_pseudogene AL583843.1 2 OTTHUMG00000007880.1 overlapping_locus +7672 chr1 HAVANA gene 50174306 50175868 858.0 - 0 ENSG00000237337.1 antisense AL592182.2 2 OTTHUMG00000007879.1 +7673 chr1 HAVANA gene 50048014 50203786 6963.0 + 0 ENSG00000162374.16 protein_coding ELAVL4 2 OTTHUMG00000007877.4 overlapping_locus +7674 chr1 HAVANA gene 50206084 50223127 250.0 - 0 ENSG00000233407.1 antisense AL592182.1 2 OTTHUMG00000007882.1 +7675 chr1 HAVANA gene 50252569 50258994 3304.0 + 0 ENSG00000284645.1 lincRNA AL592182.3 2 OTTHUMG00000192328.1 +7676 chr1 HAVANA gene 50229662 50321170 3489.0 - 0 ENSG00000284696.1 lincRNA AL596275.2 2 OTTHUMG00000192329.1 +7677 chr1 HAVANA gene 50326131 50327007 877.0 + 0 ENSG00000234080.3 processed_pseudogene AL596275.1 1 OTTHUMG00000007878.1 pseudo_consens +7678 chr1 HAVANA gene 50398825 50399773 653.0 - 0 ENSG00000229316.1 processed_pseudogene HMGB1P45 1 OTTHUMG00000007881.1 pseudo_consens +7679 chr1 HAVANA gene 50405430 50406024 595.0 - 0 ENSG00000225671.2 processed_pseudogene FCF1P6 1 OTTHUMG00000007883.2 pseudo_consens +7680 chr1 HAVANA gene 50417550 50423500 3225.0 - 0 ENSG00000142700.11 protein_coding DMRTA2 2 OTTHUMG00000007884.3 +7681 chr1 HAVANA gene 50423609 50425316 930.0 + 0 ENSG00000284700.1 bidirectional_promoter_lncRNA AL049637.2 2 OTTHUMG00000192331.1 +7682 chr1 HAVANA gene 50461469 50471150 503.0 + 0 ENSG00000225767.1 antisense AL049637.1 2 OTTHUMG00000007927.1 +7683 chr1 ENSEMBL gene 50582404 50582511 108.0 + 0 ENSG00000207194.1 snRNA RNU6-1026P 3 +7684 chr1 HAVANA gene 50780340 50781150 811.0 + 0 ENSG00000230585.2 processed_pseudogene PHBP12 1 OTTHUMG00000007928.2 pseudo_consens +7685 chr1 HAVANA gene 50846468 50846837 370.0 + 0 ENSG00000237130.1 processed_pseudogene MRPS6P2 1 OTTHUMG00000007929.1 pseudo_consens +7686 chr1 HAVANA gene 50437028 50960263 7545.0 - 0 ENSG00000185104.19 protein_coding FAF1 2 OTTHUMG00000007930.6 +7687 chr1 HAVANA gene 50960745 50974633 3318.0 + 0 ENSG00000123080.10 protein_coding CDKN2C 2 OTTHUMG00000008046.2 +7688 chr1 ENSEMBL gene 51059837 51059905 69.0 + 0 ENSG00000265538.1 miRNA MIR4421 3 +7689 chr1 ENSEMBL gene 51060018 51060103 86.0 + 0 ENSG00000275816.1 miRNA MIR6500 3 +7690 chr1 ENSEMBL gene 51107222 51107331 110.0 + 0 ENSG00000200262.1 misc_RNA RF00019 3 +7691 chr1 HAVANA gene 51102221 51148086 1118.0 + 0 ENSG00000204006.9 protein_coding C1orf185 2 OTTHUMG00000008084.6 ncRNA_host +7692 chr1 HAVANA gene 51157788 51158471 684.0 - 0 ENSG00000213478.2 processed_pseudogene CFL1P2 1 OTTHUMG00000008194.1 pseudo_consens +7693 chr1 HAVANA gene 51195095 51235096 2366.0 - 0 ENSG00000203356.2 lincRNA LINC01562 2 OTTHUMG00000008195.1 +7694 chr1 HAVANA gene 51250603 51251472 870.0 - 0 ENSG00000233406.5 processed_pseudogene AL162430.1 1 OTTHUMG00000008196.1 pseudo_consens +7695 chr1 HAVANA gene 51264916 51266074 435.0 - 0 ENSG00000236434.2 antisense AL162430.2 2 OTTHUMG00000008188.2 +7696 chr1 HAVANA gene 51236271 51273455 3122.0 + 0 ENSG00000123091.4 protein_coding RNF11 2 OTTHUMG00000008190.2 +7697 chr1 HAVANA gene 51329654 51335324 1222.0 + 0 ENSG00000261664.5 antisense TTC39A-AS1 2 OTTHUMG00000008189.1 +7698 chr1 HAVANA gene 51287258 51345116 9362.0 - 0 ENSG00000085831.15 protein_coding TTC39A 2 OTTHUMG00000008193.5 +7699 chr1 HAVANA gene 51372270 51373224 955.0 + 0 ENSG00000232027.2 processed_pseudogene AL671986.1 1 OTTHUMG00000008235.2 pseudo_consens +7700 chr1 ENSEMBL gene 51382308 51382414 107.0 + 0 ENSG00000206595.1 snRNA RNU6-877P 3 +7701 chr1 HAVANA gene 51461721 51463416 678.0 + 0 ENSG00000238140.1 antisense AC104170.2 2 OTTHUMG00000008236.1 +7702 chr1 HAVANA gene 51354263 51519328 7440.0 - 0 ENSG00000085832.16 protein_coding EPS15 1 OTTHUMG00000008192.2 +7703 chr1 ENSEMBL gene 51538625 51538729 105.0 - 0 ENSG00000252032.1 snRNA RNU6-1281P 3 +7704 chr1 HAVANA gene 51518309 51561629 476.0 + 0 ENSG00000227070.1 antisense AC104170.1 2 OTTHUMG00000008232.1 +7705 chr1 HAVANA gene 51561866 51594897 946.0 - 0 ENSG00000227742.2 transcribed_unitary_pseudogene CALR4P 2 OTTHUMG00000008233.2 +7706 chr1 HAVANA gene 51707138 51708137 1000.0 - 0 ENSG00000236973.2 processed_pseudogene GAPDHP51 1 OTTHUMG00000008961.2 pseudo_consens +7707 chr1 HAVANA gene 51709062 51709940 879.0 + 0 ENSG00000232846.1 processed_pseudogene SLC25A6P3 1 OTTHUMG00000008962.1 pseudo_consens,overlapping_locus +7708 chr1 ENSEMBL gene 51724775 51724896 122.0 - 0 ENSG00000212624.1 snoRNA RF00568 3 +7709 chr1 HAVANA gene 51577179 51798427 9523.0 + 0 ENSG00000117859.18 protein_coding OSBPL9 2 OTTHUMG00000008234.8 overlapping_locus +7710 chr1 HAVANA gene 51793934 51799154 1819.0 + 0 ENSG00000266993.3 antisense AL050343.1 2 OTTHUMG00000008380.6 overlapping_locus +7711 chr1 HAVANA gene 51801028 51801307 280.0 + 0 ENSG00000272175.1 antisense AL050343.2 2 OTTHUMG00000185785.1 +7712 chr1 ENSEMBL gene 51836344 51836402 59.0 - 0 ENSG00000283899.1 miRNA MIR761 3 +7713 chr1 HAVANA gene 51859778 51860135 358.0 + 0 ENSG00000230604.2 processed_pseudogene TSEN15P2 1 OTTHUMG00000008626.2 pseudo_consens +7714 chr1 HAVANA gene 51789191 51878937 6773.0 - 0 ENSG00000078618.21 protein_coding NRDC 1 OTTHUMG00000008278.4 ncRNA_host +7715 chr1 ENSEMBL gene 51973410 51973535 126.0 + 0 ENSG00000200839.1 rRNA_pseudogene RNA5SP48 3 +7716 chr1 HAVANA gene 51980473 51980814 342.0 + 0 ENSG00000229032.1 processed_pseudogene AL445685.2 1 OTTHUMG00000008628.1 pseudo_consens +7717 chr1 HAVANA gene 51907956 51990764 12844.0 - 0 ENSG00000169213.6 protein_coding RAB3B 2 OTTHUMG00000008627.1 +7718 chr1 ENSEMBL gene 51995740 51996039 300.0 + 0 ENSG00000264613.2 misc_RNA RN7SL290P 3 +7719 chr1 HAVANA gene 52020153 52033350 1986.0 - 0 ENSG00000285839.1 protein_coding AL445685.3 2 OTTHUMG00000193360.1 +7720 chr1 HAVANA gene 52032103 52033816 1714.0 - 0 ENSG00000198841.3 protein_coding KTI12 2 OTTHUMG00000008630.1 overlapping_locus +7721 chr1 HAVANA gene 52033391 52044279 762.0 + 0 ENSG00000223390.1 antisense AL445685.1 2 OTTHUMG00000008631.1 +7722 chr1 HAVANA gene 52050918 52052683 391.0 + 0 ENSG00000228369.2 antisense TXNDC12-AS1 2 OTTHUMG00000008632.2 +7723 chr1 HAVANA gene 52020131 52056171 3630.0 - 0 ENSG00000117862.12 protein_coding TXNDC12 2 OTTHUMG00000008629.6 overlapping_locus +7724 chr1 HAVANA gene 52056125 52090716 6022.0 + 0 ENSG00000134717.17 protein_coding BTF3L4 2 OTTHUMG00000008960.2 +7725 chr1 ENSEMBL gene 52150104 52150419 316.0 + 0 ENSG00000241745.3 misc_RNA RN7SL788P 3 +7726 chr1 HAVANA gene 52160261 52160600 340.0 - 0 ENSG00000228407.2 processed_pseudogene AL139156.2 1 OTTHUMG00000008063.2 pseudo_consens +7727 chr1 HAVANA gene 52162186 52163026 841.0 - 0 ENSG00000223429.1 processed_pseudogene AL139156.1 1 OTTHUMG00000008064.1 pseudo_consens +7728 chr1 HAVANA gene 52179848 52180553 706.0 + 0 ENSG00000224255.2 processed_pseudogene PDCL3P6 1 OTTHUMG00000008058.2 pseudo_consens,overlapping_locus +7729 chr1 HAVANA gene 52189916 52190309 394.0 - 0 ENSG00000236004.2 processed_pseudogene AL139156.3 1 OTTHUMG00000008059.2 pseudo_consens +7730 chr1 HAVANA gene 52252062 52252773 344.0 - 0 ENSG00000237663.2 processed_pseudogene DNAJC19P7 1 OTTHUMG00000008060.2 pseudo_consens +7731 chr1 HAVANA gene 52253621 52254176 556.0 + 0 ENSG00000213735.2 processed_pseudogene ANAPC10P1 1 OTTHUMG00000008062.1 pseudo_consens,overlapping_locus +7732 chr1 HAVANA gene 52142094 52346686 5809.0 + 0 ENSG00000157077.14 protein_coding ZFYVE9 2 OTTHUMG00000008061.2 ncRNA_host,overlapping_locus +7733 chr1 HAVANA gene 52353487 52353877 391.0 + 0 ENSG00000272100.1 antisense AL513218.1 2 OTTHUMG00000185808.1 +7734 chr1 HAVANA gene 52345723 52366193 7495.0 - 0 ENSG00000154222.14 protein_coding CC2D1B 2 OTTHUMG00000008102.6 +7735 chr1 HAVANA gene 52368677 52369244 568.0 + 0 ENSG00000224680.4 processed_pseudogene PLA2G12AP1 1 OTTHUMG00000008103.2 pseudo_consens +7736 chr1 HAVANA gene 52372829 52404459 3157.0 - 0 ENSG00000085840.12 protein_coding ORC1 2 OTTHUMG00000008104.4 +7737 chr1 HAVANA gene 52404564 52420839 5658.0 + 0 ENSG00000134748.12 protein_coding PRPF38A 2 OTTHUMG00000008199.2 +7738 chr1 HAVANA gene 52408282 52553487 16199.0 - 0 ENSG00000134744.13 protein_coding TUT4 1 OTTHUMG00000008200.6 +7739 chr1 HAVANA gene 52554818 52555273 456.0 + 0 ENSG00000272371.1 lincRNA AL591167.1 2 OTTHUMG00000185810.1 +7740 chr1 HAVANA gene 52573114 52573816 703.0 + 0 ENSG00000236290.1 processed_pseudogene EEF1GP7 1 OTTHUMG00000008321.1 pseudo_consens +7741 chr1 HAVANA gene 52602372 52609051 1691.0 + 0 ENSG00000116157.5 protein_coding GPX7 2 OTTHUMG00000008322.1 +7742 chr1 HAVANA gene 52633344 52669683 2508.0 + 0 ENSG00000182183.14 protein_coding SHISAL2A 2 OTTHUMG00000008330.2 +7743 chr1 HAVANA gene 52684451 52698366 4165.0 - 0 ENSG00000162377.5 protein_coding COA7 2 OTTHUMG00000008505.3 +7744 chr1 HAVANA gene 52709122 52709442 321.0 + 0 ENSG00000233664.1 processed_pseudogene NDUFS5P3 1 OTTHUMG00000008506.1 pseudo_consens +7745 chr1 ENSEMBL gene 52714399 52714695 297.0 + 0 ENSG00000239640.3 misc_RNA RN7SL62P 3 +7746 chr1 ENSEMBL gene 52754322 52754462 141.0 + 0 ENSG00000252018.1 snRNA RNU2-30P 3 +7747 chr1 HAVANA gene 52772194 52772648 455.0 - 0 ENSG00000228929.1 processed_pseudogene RPS13P2 1 OTTHUMG00000008921.1 pseudo_consens +7748 chr1 ENSEMBL gene 52805108 52805212 105.0 - 0 ENSG00000206627.1 snRNA RNU6-969P 3 +7749 chr1 HAVANA gene 52726467 52827342 8198.0 + 0 ENSG00000162378.12 protein_coding ZYG11B 2 OTTHUMG00000008938.1 ncRNA_host +7750 chr1 HAVANA gene 52881216 52881730 380.0 - 0 ENSG00000242391.2 antisense AC099677.4 2 OTTHUMG00000008926.2 +7751 chr1 HAVANA gene 52842511 52894998 4694.0 + 0 ENSG00000203995.9 protein_coding ZYG11A 2 OTTHUMG00000008923.4 +7752 chr1 HAVANA gene 52920422 52920596 175.0 + 0 ENSG00000230953.2 processed_pseudogene AC099677.1 2 OTTHUMG00000057523.2 +7753 chr1 HAVANA gene 52925249 52925423 175.0 - 0 ENSG00000231866.2 processed_pseudogene AC099677.2 1 OTTHUMG00000008929.2 pseudo_consens,overlapping_locus +7754 chr1 HAVANA gene 52895910 52927212 11572.0 - 0 ENSG00000121310.16 protein_coding ECHDC2 2 OTTHUMG00000008927.9 overlapping_locus +7755 chr1 ENSEMBL gene 52928674 52928772 99.0 + 0 ENSG00000264834.1 miRNA MIR1273F 3 +7756 chr1 ENSEMBL gene 52934930 52935017 88.0 + 0 ENSG00000266188.1 miRNA MIR5095 3 +7757 chr1 ENSEMBL gene 52940314 52940413 100.0 + 0 ENSG00000265815.1 miRNA MIR1273G 3 +7758 chr1 HAVANA gene 52943536 52943930 395.0 - 0 ENSG00000237279.2 processed_pseudogene AC099677.3 1 OTTHUMG00000008931.2 pseudo_consens +7759 chr1 HAVANA gene 52993201 52993702 502.0 - 0 ENSG00000236360.2 processed_pseudogene AL445183.3 2 OTTHUMG00000008918.1 +7760 chr1 HAVANA gene 52994726 52996026 1301.0 + 0 ENSG00000226147.1 processed_pseudogene TUBBP10 2 OTTHUMG00000008919.1 overlapping_locus +7761 chr1 HAVANA gene 52927229 53051703 8305.0 + 0 ENSG00000116171.17 protein_coding SCP2 1 OTTHUMG00000008936.5 ncRNA_host,overlapping_locus +7762 chr1 HAVANA gene 53073110 53073389 280.0 - 0 ENSG00000227644.2 processed_pseudogene HIGD1AP11 1 OTTHUMG00000008922.2 pseudo_consens,overlapping_locus +7763 chr1 HAVANA gene 53069938 53085502 467.0 - 0 ENSG00000232993.1 antisense AL445183.1 2 OTTHUMG00000008920.1 overlapping_locus +7764 chr1 HAVANA gene 53062052 53085502 4900.0 + 0 ENSG00000174348.13 protein_coding PODN 2 OTTHUMG00000008934.2 +7765 chr1 HAVANA gene 53114576 53118609 1871.0 + 0 ENSG00000235563.1 antisense AL445183.2 1 OTTHUMG00000008925.1 +7766 chr1 HAVANA gene 53087179 53142632 5407.0 - 0 ENSG00000162383.12 protein_coding SLC1A7 2 OTTHUMG00000008937.3 +7767 chr1 HAVANA gene 53180921 53186900 718.0 + 0 ENSG00000277397.1 unprocessed_pseudogene AL606760.4 2 OTTHUMG00000187525.1 +7768 chr1 HAVANA gene 53209783 53213775 1227.0 - 0 ENSG00000236723.2 antisense AL606760.2 2 OTTHUMG00000008939.2 +7769 chr1 HAVANA gene 53196429 53214197 10452.0 + 0 ENSG00000157184.6 protein_coding CPT2 2 OTTHUMG00000008942.4 +7770 chr1 HAVANA gene 53214099 53220617 4487.0 - 0 ENSG00000162384.13 protein_coding C1orf123 2 OTTHUMG00000008940.3 +7771 chr1 HAVANA gene 53220663 53224253 3591.0 + 0 ENSG00000259818.1 antisense AL606760.3 2 OTTHUMG00000175833.1 +7772 chr1 HAVANA gene 53226892 53238610 1463.0 - 0 ENSG00000162385.10 protein_coding MAGOH 2 OTTHUMG00000008932.1 +7773 chr1 HAVANA gene 53238610 53242783 1181.0 + 0 ENSG00000226754.1 antisense AL606760.1 1 OTTHUMG00000008941.1 +7774 chr1 HAVANA gene 53267935 53268601 470.0 + 0 ENSG00000234578.1 antisense AL355483.4 2 OTTHUMG00000008928.1 +7775 chr1 HAVANA gene 53288024 53289706 675.0 + 0 ENSG00000228838.1 antisense AL355483.2 2 OTTHUMG00000008930.1 +7776 chr1 HAVANA gene 53291791 53292138 237.0 - 0 ENSG00000225030.1 sense_intronic AL355483.1 2 OTTHUMG00000008933.1 overlapping_locus +7777 chr1 HAVANA gene 53304536 53307462 752.0 + 0 ENSG00000232762.1 antisense AL355483.3 1 OTTHUMG00000008935.1 +7778 chr1 HAVANA gene 53242364 53328070 10258.0 - 0 ENSG00000157193.16 protein_coding LRP8 1 OTTHUMG00000008924.6 overlapping_locus +7779 chr1 HAVANA gene 53328233 53336509 567.0 + 0 ENSG00000225675.2 lincRNA LINC01771 2 OTTHUMG00000008948.2 +7780 chr1 HAVANA gene 53348488 53349233 383.0 - 0 ENSG00000226938.1 lincRNA AC119428.1 2 OTTHUMG00000008075.1 +7781 chr1 HAVANA gene 53344031 53365473 886.0 + 0 ENSG00000285954.1 lincRNA AC119428.3 2 OTTHUMG00000193201.1 +7782 chr1 HAVANA gene 53366668 53368245 850.0 - 0 ENSG00000230138.1 lincRNA AC119428.2 2 OTTHUMG00000008077.1 +7783 chr1 HAVANA gene 53413149 53440020 3164.0 - 0 ENSG00000236253.7 transcribed_processed_pseudogene SLC25A3P1 1 OTTHUMG00000008078.3 pseudo_consens +7784 chr1 HAVANA gene 53459399 53467488 2440.0 + 0 ENSG00000143006.7 protein_coding DMRTB1 2 OTTHUMG00000008080.1 +7785 chr1 ENSEMBL gene 53688749 53688812 64.0 - 0 ENSG00000239007.1 snRNA RNU7-95P 3 +7786 chr1 HAVANA gene 53506237 53738106 3113.0 - 0 ENSG00000174332.5 protein_coding GLIS1 2 OTTHUMG00000008079.2 ncRNA_host +7787 chr1 ENSEMBL gene 53771018 53771153 136.0 - 0 ENSG00000201003.1 snoRNA RF00418 3 +7788 chr1 HAVANA gene 53765460 53838860 5135.0 - 0 ENSG00000058804.11 protein_coding NDC1 2 OTTHUMG00000008073.1 ncRNA_host +7789 chr1 HAVANA gene 53841547 53841832 286.0 + 0 ENSG00000229687.2 processed_pseudogene AL049745.1 1 OTTHUMG00000008076.2 pseudo_consens +7790 chr1 HAVANA gene 53851719 53889834 2072.0 - 0 ENSG00000058799.14 protein_coding YIPF1 2 OTTHUMG00000008074.8 +7791 chr1 HAVANA gene 53891239 53911086 2282.0 + 0 ENSG00000211452.10 protein_coding DIO1 2 OTTHUMG00000008435.5 +7792 chr1 HAVANA gene 53916574 53945929 3236.0 - 0 ENSG00000081870.11 protein_coding HSPB11 2 OTTHUMG00000008408.4 +7793 chr1 HAVANA gene 53946077 53968168 2411.0 + 0 ENSG00000116212.14 protein_coding LRRC42 2 OTTHUMG00000008436.2 +7794 chr1 HAVANA gene 53974969 53976031 1063.0 - 0 ENSG00000219102.3 processed_pseudogene HNRNPA3P12 1 OTTHUMG00000008438.2 pseudo_consens +7795 chr1 HAVANA gene 54007299 54018186 2375.0 - 0 ENSG00000203985.10 protein_coding LDLRAD1 2 OTTHUMG00000008433.1 +7796 chr1 HAVANA gene 54033126 54034880 1755.0 - 0 ENSG00000280378.1 TEC AL353898.3 2 OTTHUMG00000186557.1 overlapping_locus +7797 chr1 HAVANA gene 54026681 54053504 9149.0 - 0 ENSG00000116209.11 protein_coding TMEM59 2 OTTHUMG00000008437.6 overlapping_locus +7798 chr1 ENSEMBL gene 54054079 54054154 76.0 + 0 ENSG00000283749.1 miRNA MIR4781 3 +7799 chr1 HAVANA gene 54089856 54090093 238.0 + 0 ENSG00000225183.1 processed_pseudogene AL353898.1 1 OTTHUMG00000008450.1 pseudo_consens,overlapping_locus +7800 chr1 ENSEMBL gene 54099968 54100224 255.0 - 0 ENSG00000279049.1 pseudogene AL353898.2 3 +7801 chr1 HAVANA gene 54053584 54112519 12168.0 + 0 ENSG00000116205.13 protein_coding TCEANC2 2 OTTHUMG00000008434.5 ncRNA_host,overlapping_locus +7802 chr1 HAVANA gene 54137746 54142980 4969.0 + 0 ENSG00000280425.2 antisense AL357673.2 2 OTTHUMG00000167348.2 +7803 chr1 HAVANA gene 54132968 54153770 3229.0 - 0 ENSG00000157211.11 protein_coding CDCP2 1 OTTHUMG00000155307.9 overlapping_locus +7804 chr1 HAVANA gene 54169651 54200036 8926.0 - 0 ENSG00000215883.10 protein_coding CYB5RL 1 OTTHUMG00000008082.13 overlapping_locus +7805 chr1 HAVANA gene 54132686 54200073 3952.0 - 0 ENSG00000256407.2 protein_coding AL357673.1 2 OTTHUMG00000168203.2 overlapping_locus +7806 chr1 HAVANA gene 54184041 54225464 2549.0 + 0 ENSG00000116221.15 protein_coding MRPL37 1 OTTHUMG00000008118.6 +7807 chr1 HAVANA gene 54236440 54239063 2624.0 + 0 ENSG00000198711.5 antisense SSBP3-AS1 2 OTTHUMG00000008365.2 +7808 chr1 HAVANA gene 54285405 54287371 1111.0 + 0 ENSG00000225632.1 antisense AL161644.1 2 OTTHUMG00000008263.1 +7809 chr1 HAVANA gene 54225432 54413479 5227.0 - 0 ENSG00000157216.15 protein_coding SSBP3 2 OTTHUMG00000008264.5 +7810 chr1 HAVANA gene 54416256 54420860 289.0 + 0 ENSG00000232245.1 lincRNA AL035415.1 2 OTTHUMG00000008362.1 +7811 chr1 HAVANA gene 54516412 54517259 683.0 - 0 ENSG00000235741.1 lincRNA AC099796.1 2 OTTHUMG00000008359.1 +7812 chr1 HAVANA gene 54524824 54524931 108.0 + 0 ENSG00000237173.1 processed_pseudogene AC099796.2 1 OTTHUMG00000008360.1 pseudo_consens +7813 chr1 HAVANA gene 54536796 54537758 963.0 + 0 ENSG00000227453.1 processed_pseudogene HNRNPA1P63 1 OTTHUMG00000008361.1 pseudo_consens +7814 chr1 HAVANA gene 54609182 54623556 2005.0 - 0 ENSG00000162391.11 protein_coding FAM151A 2 OTTHUMG00000009888.2 overlapping_locus +7815 chr1 HAVANA gene 54621477 54628438 623.0 - 0 ENSG00000230728.1 sense_overlapping AL590093.1 2 OTTHUMG00000009889.1 overlapping_locus +7816 chr1 HAVANA gene 54542257 54639192 9768.0 + 0 ENSG00000162390.17 protein_coding ACOT11 2 OTTHUMG00000009891.2 +7817 chr1 HAVANA gene 54641754 54710266 9088.0 + 0 ENSG00000184313.19 protein_coding MROH7 2 OTTHUMG00000009890.6 overlapping_locus +7818 chr1 HAVANA gene 54641786 54742308 7090.0 + 0 ENSG00000271723.5 protein_coding MROH7-TTC4 2 OTTHUMG00000185328.1 overlapping_locus +7819 chr1 HAVANA gene 54715822 54742657 3527.0 + 0 ENSG00000243725.6 protein_coding TTC4 1 OTTHUMG00000009914.3 overlapping_locus +7820 chr1 HAVANA gene 54756898 54764514 2347.0 - 0 ENSG00000162396.5 protein_coding PARS2 2 OTTHUMG00000009915.1 +7821 chr1 HAVANA gene 54792885 54794905 343.0 + 0 ENSG00000237453.1 antisense AC096536.1 1 OTTHUMG00000009987.3 +7822 chr1 HAVANA gene 54779712 54801267 6055.0 - 0 ENSG00000006555.10 protein_coding TTC22 1 OTTHUMG00000009916.3 +7823 chr1 HAVANA gene 54806063 54842252 1777.0 + 0 ENSG00000162398.11 protein_coding LEXM 2 OTTHUMG00000009986.2 +7824 chr1 HAVANA gene 54849627 54887271 6290.0 - 0 ENSG00000116133.12 protein_coding DHCR24 2 OTTHUMG00000009989.16 +7825 chr1 HAVANA gene 54886875 54888001 575.0 + 0 ENSG00000242396.1 antisense AC096536.2 2 OTTHUMG00000009990.1 overlapping_locus +7826 chr1 HAVANA gene 54887563 54888850 765.0 + 0 ENSG00000233203.6 antisense DHCR24-DT 2 OTTHUMG00000009988.1 overlapping_locus +7827 chr1 HAVANA gene 54974900 54980464 1733.0 - 0 ENSG00000284601.1 bidirectional_promoter_lncRNA AL590440.2 2 OTTHUMG00000192332.2 +7828 chr1 HAVANA gene 54980950 54992274 428.0 - 0 ENSG00000233271.1 antisense AL590440.1 2 OTTHUMG00000009992.1 +7829 chr1 HAVANA gene 54980792 54992293 1097.0 + 0 ENSG00000143001.4 protein_coding TMEM61 2 OTTHUMG00000009991.1 +7830 chr1 HAVANA gene 54998193 55011784 5113.0 + 0 ENSG00000162399.7 protein_coding BSND 2 OTTHUMG00000008112.5 +7831 chr1 HAVANA gene 55039548 55064852 4981.0 + 0 ENSG00000169174.10 protein_coding PCSK9 2 OTTHUMG00000008136.1 +7832 chr1 HAVANA gene 55066359 55215113 11772.0 - 0 ENSG00000162402.13 protein_coding USP24 2 OTTHUMG00000008135.5 +7833 chr1 HAVANA gene 55222379 55223372 994.0 + 0 ENSG00000231095.1 processed_pseudogene GYG1P3 1 OTTHUMG00000008215.1 pseudo_consens,overlapping_locus +7834 chr1 ENSEMBL gene 55225641 55225723 83.0 + 0 ENSG00000265822.1 miRNA MIR4422 3 +7835 chr1 HAVANA gene 55217645 55324691 2568.0 + 0 ENSG00000231090.2 lincRNA MIR4422HG 2 OTTHUMG00000008214.2 ncRNA_host,overlapping_locus +7836 chr1 HAVANA gene 55367466 55368774 1309.0 + 0 ENSG00000231900.3 processed_pseudogene GOT2P1 1 OTTHUMG00000008216.2 pseudo_consens +7837 chr1 HAVANA gene 55372710 55373316 607.0 - 0 ENSG00000232198.2 processed_pseudogene MTCO2P34 2 OTTHUMG00000008213.2 +7838 chr1 ENSEMBL gene 55376526 55376852 327.0 - 0 ENSG00000199831.1 misc_RNA RN7SKP291 3 +7839 chr1 ENSEMBL gene 55398514 55398620 107.0 + 0 ENSG00000252162.1 snRNA RNU6-830P 3 +7840 chr1 ENSEMBL gene 55484871 55484972 102.0 - 0 ENSG00000272051.1 misc_RNA RF00019 3 +7841 chr1 HAVANA gene 55938714 55939280 430.0 - 0 ENSG00000227104.3 transcribed_unprocessed_pseudogene PIGQP1 1 OTTHUMG00000129005.3 pseudo_consens,overlapping_locus +7842 chr1 HAVANA gene 55915607 55944974 644.0 - 0 ENSG00000230250.2 lincRNA LINC01753 2 OTTHUMG00000008244.2 overlapping_locus +7843 chr1 HAVANA gene 55868254 55950119 3313.0 + 0 ENSG00000233079.2 lincRNA LINC01755 2 OTTHUMG00000008245.2 overlapping_locus +7844 chr1 HAVANA gene 55329288 56070513 6257.0 + 0 ENSG00000234810.3 lincRNA AL603840.1 2 OTTHUMG00000008243.5 ncRNA_host,overlapping_locus +7845 chr1 HAVANA gene 56145721 56155224 731.0 + 0 ENSG00000235612.1 lincRNA AL353681.1 2 OTTHUMG00000008126.2 +7846 chr1 HAVANA gene 56207567 56208456 890.0 - 0 ENSG00000229871.1 processed_pseudogene RPSAP20 1 OTTHUMG00000008127.2 pseudo_consens +7847 chr1 HAVANA gene 56414963 56415966 545.0 + 0 ENSG00000223956.2 lincRNA LINC01767 2 OTTHUMG00000008128.2 +7848 chr1 HAVANA gene 56154545 56477687 7878.0 - 0 ENSG00000260971.4 lincRNA AC119674.1 2 OTTHUMG00000175839.6 overlapping_locus +7849 chr1 HAVANA gene 56173433 56524495 2655.0 - 0 ENSG00000284686.1 protein_coding AC119674.2 2 OTTHUMG00000192356.2 overlapping_locus +7850 chr1 HAVANA gene 56538452 56538911 460.0 + 0 ENSG00000236776.1 processed_pseudogene RPL21P23 1 OTTHUMG00000039625.1 pseudo_consens +7851 chr1 HAVANA gene 56585612 56586242 433.0 - 0 ENSG00000224980.1 processed_pseudogene RPL23AP85 1 OTTHUMG00000008328.2 pseudo_consens,overlapping_locus +7852 chr1 HAVANA gene 56619409 56619549 141.0 - 0 ENSG00000225475.1 processed_pseudogene AC099789.1 2 OTTHUMG00000008159.2 overlapping_locus +7853 chr1 HAVANA gene 56494747 56645301 5286.0 - 0 ENSG00000162407.8 protein_coding PLPP3 2 OTTHUMG00000008160.2 overlapping_locus +7854 chr1 HAVANA gene 56645322 56715335 9354.0 + 0 ENSG00000162409.10 protein_coding PRKAA2 2 OTTHUMG00000008282.2 +7855 chr1 HAVANA gene 56718804 56819696 4633.0 - 0 ENSG00000187889.12 protein_coding FYB2 2 OTTHUMG00000008281.3 +7856 chr1 HAVANA gene 56823679 56826920 1824.0 - 0 ENSG00000229913.1 antisense AL360295.1 2 OTTHUMG00000008327.3 +7857 chr1 HAVANA gene 56854806 56918221 2356.0 + 0 ENSG00000157131.10 protein_coding C8A 2 OTTHUMG00000008306.1 +7858 chr1 HAVANA gene 56929210 56966140 2729.0 - 0 ENSG00000021852.12 protein_coding C8B 2 OTTHUMG00000008305.2 +7859 chr1 HAVANA gene 56963886 56996757 610.0 + 0 ENSG00000236341.1 antisense AL161740.1 2 OTTHUMG00000056480.1 +7860 chr1 HAVANA gene 57386576 57387450 708.0 + 0 ENSG00000227935.1 lincRNA AL390243.1 2 OTTHUMG00000010108.1 +7861 chr1 HAVANA gene 57605847 57606206 360.0 - 0 ENSG00000236888.1 processed_pseudogene RPS20P5 1 OTTHUMG00000010066.1 pseudo_consens,overlapping_locus +7862 chr1 HAVANA gene 57860532 57880905 4336.0 + 0 ENSG00000226759.7 antisense DAB1-AS1 2 OTTHUMG00000008286.7 +7863 chr1 HAVANA gene 58047889 58049335 1447.0 - 0 ENSG00000229887.4 transcribed_unprocessed_pseudogene HNRNPA1P6 1 OTTHUMG00000010071.3 pseudo_consens,overlapping_locus +7864 chr1 HAVANA gene 58056133 58056480 348.0 - 0 ENSG00000223416.3 processed_pseudogene RPS26P15 2 OTTHUMG00000010072.1 overlapping_locus +7865 chr1 HAVANA gene 58060139 58080274 620.0 + 0 ENSG00000235038.1 lincRNA AL445193.2 2 OTTHUMG00000010107.1 +7866 chr1 HAVANA gene 58084419 58084559 141.0 + 0 ENSG00000230546.1 unprocessed_pseudogene AL445193.1 2 OTTHUMG00000010065.1 +7867 chr1 HAVANA gene 58228682 58229003 322.0 - 0 ENSG00000233216.1 processed_pseudogene AL357373.1 1 OTTHUMG00000010069.1 pseudo_consens,overlapping_locus +7868 chr1 HAVANA gene 56994778 58546734 7548.0 - 0 ENSG00000173406.15 protein_coding DAB1 2 OTTHUMG00000008391.7 overlapping_locus +7869 chr1 HAVANA gene 58415384 58546802 3718.0 - 0 ENSG00000162600.11 protein_coding OMA1 2 OTTHUMG00000010068.6 overlapping_locus +7870 chr1 HAVANA gene 58552913 58553333 421.0 - 0 ENSG00000270209.1 processed_pseudogene AL035411.2 1 OTTHUMG00000184289.1 pseudo_consens +7871 chr1 ENSEMBL gene 58565631 58565932 302.0 - 0 ENSG00000264128.2 misc_RNA RN7SL713P 3 +7872 chr1 HAVANA gene 58575423 58577773 2351.0 - 0 ENSG00000184292.6 protein_coding TACSTD2 2 OTTHUMG00000010067.1 +7873 chr1 HAVANA gene 58630841 58631530 690.0 - 0 ENSG00000185839.3 processed_pseudogene AL035411.1 1 OTTHUMG00000010070.1 pseudo_consens +7874 chr1 HAVANA gene 58654739 58700092 8938.0 - 0 ENSG00000162601.9 protein_coding MYSM1 2 OTTHUMG00000009533.2 +7875 chr1 HAVANA gene 58715609 58771295 4739.0 + 0 ENSG00000283445.1 lincRNA AL136985.3 2 OTTHUMG00000191617.1 +7876 chr1 HAVANA gene 58780788 58784327 3540.0 - 0 ENSG00000177606.6 protein_coding JUN 2 OTTHUMG00000008376.1 +7877 chr1 HAVANA gene 58812808 58813342 535.0 - 0 ENSG00000272226.1 lincRNA AL136985.2 2 OTTHUMG00000185812.1 +7878 chr1 HAVANA gene 58838448 58851254 395.0 - 0 ENSG00000231740.1 lincRNA AL136985.1 1 OTTHUMG00000008374.1 +7879 chr1 HAVANA gene 58785128 58901105 2539.0 + 0 ENSG00000234807.6 lincRNA LINC01135 2 OTTHUMG00000008377.3 +7880 chr1 HAVANA gene 58882868 58903747 1746.0 - 0 ENSG00000232453.6 lincRNA AC105277.1 2 OTTHUMG00000008375.2 +7881 chr1 HAVANA gene 58999676 59000494 819.0 + 0 ENSG00000228121.1 processed_pseudogene PHBP3 1 OTTHUMG00000008378.1 pseudo_consens +7882 chr1 HAVANA gene 59054397 59056049 171.0 - 0 ENSG00000241042.1 lincRNA AL592431.2 2 OTTHUMG00000008401.1 overlapping_locus +7883 chr1 HAVANA gene 59055999 59078116 317.0 - 0 ENSG00000235215.2 lincRNA AL592431.1 2 OTTHUMG00000008402.1 overlapping_locus +7884 chr1 HAVANA gene 58933643 59240555 6730.0 + 0 ENSG00000237352.3 lincRNA LINC01358 2 OTTHUMG00000008373.3 +7885 chr1 HAVANA gene 59289303 59289640 338.0 - 0 ENSG00000270457.1 lincRNA AC093424.1 2 OTTHUMG00000185112.1 +7886 chr1 HAVANA gene 59131936 59296491 4595.0 - 0 ENSG00000224609.7 processed_transcript HSD52 2 OTTHUMG00000008403.6 +7887 chr1 ENSEMBL gene 59733227 59733296 70.0 - 0 ENSG00000266150.1 miRNA MIR4711 3 +7888 chr1 HAVANA gene 59754747 59789182 767.0 - 0 ENSG00000226883.1 antisense AL035416.1 2 OTTHUMG00000008768.1 +7889 chr1 HAVANA gene 59296638 59810647 12174.0 + 0 ENSG00000172456.17 protein_coding FGGY 1 OTTHUMG00000008424.16 +7890 chr1 HAVANA gene 59814786 59876378 6758.0 + 0 ENSG00000134709.10 protein_coding HOOK1 2 OTTHUMG00000008990.2 +7891 chr1 HAVANA gene 59893308 59926790 2990.0 - 0 ENSG00000134716.10 protein_coding CYP2J2 2 OTTHUMG00000008991.4 +7892 chr1 ENSEMBL gene 59974757 59975054 298.0 - 0 ENSG00000265535.2 misc_RNA RN7SL475P 3 +7893 chr1 HAVANA gene 59987269 60073770 4422.0 - 0 ENSG00000162598.13 protein_coding C1orf87 1 OTTHUMG00000008992.2 +7894 chr1 HAVANA gene 60097415 60097976 562.0 + 0 ENSG00000229332.2 processed_pseudogene PGBD4P8 2 OTTHUMG00000008993.2 +7895 chr1 HAVANA gene 60114875 60149679 683.0 + 0 ENSG00000238242.1 lincRNA AC097066.1 2 OTTHUMG00000008994.1 +7896 chr1 HAVANA gene 60515716 60640491 10622.0 - 0 ENSG00000226476.3 lincRNA LINC01748 2 OTTHUMG00000009978.3 +7897 chr1 HAVANA gene 60659631 60867998 4285.0 - 0 ENSG00000231252.2 lincRNA AC099792.1 2 OTTHUMG00000008422.2 +7898 chr1 HAVANA gene 60940239 60970776 1843.0 - 0 ENSG00000237928.5 antisense NFIA-AS2 2 OTTHUMG00000008421.2 +7899 chr1 HAVANA gene 61124733 61125202 470.0 + 0 ENSG00000270742.1 sense_intronic AC096947.1 2 OTTHUMG00000185084.1 overlapping_locus +7900 chr1 HAVANA gene 61248945 61253510 842.0 - 0 ENSG00000237853.6 processed_transcript NFIA-AS1 2 OTTHUMG00000040631.4 +7901 chr1 HAVANA gene 60865259 61462793 10872.0 + 0 ENSG00000162599.15 protein_coding NFIA 1 OTTHUMG00000008618.8 overlapping_locus +7902 chr1 HAVANA gene 61481087 61533271 2442.0 + 0 ENSG00000284808.1 lincRNA AC099791.3 2 OTTHUMG00000192357.1 +7903 chr1 HAVANA gene 61654194 61654908 715.0 + 0 ENSG00000223920.2 processed_pseudogene AC099791.1 1 OTTHUMG00000008465.2 pseudo_consens +7904 chr1 HAVANA gene 61681046 61725423 5516.0 - 0 ENSG00000162604.12 protein_coding TM2D1 1 OTTHUMG00000008466.6 +7905 chr1 HAVANA gene 61741998 61742424 427.0 - 0 ENSG00000271200.1 lincRNA AC099791.2 2 OTTHUMG00000185115.1 +7906 chr1 ENSEMBL gene 61816419 61816522 104.0 + 0 ENSG00000200575.1 snRNA RNU6-414P 3 +7907 chr1 ENSEMBL gene 61852499 61852602 104.0 + 0 ENSG00000212360.1 snRNA RNU6-1177P 3 +7908 chr1 HAVANA gene 62038842 62039111 270.0 + 0 ENSG00000236646.1 processed_pseudogene LAMTOR5P1 1 OTTHUMG00000008916.2 pseudo_consens,overlapping_locus +7909 chr1 ENSEMBL gene 62072448 62072741 294.0 + 0 ENSG00000242860.3 misc_RNA RN7SL180P 3 +7910 chr1 ENSEMBL gene 62078789 62078856 68.0 - 0 ENSG00000283690.1 miRNA MIR3116-2 3 +7911 chr1 ENSEMBL gene 62078786 62078859 74.0 + 0 ENSG00000263908.1 miRNA MIR3116-1 3 +7912 chr1 HAVANA gene 61742406 62178675 11990.0 + 0 ENSG00000132849.20 protein_coding PATJ 2 OTTHUMG00000008560.10 ncRNA_host,overlapping_locus +7913 chr1 HAVANA gene 62189131 62189953 458.0 + 0 ENSG00000234204.1 processed_pseudogene PIGPP2 1 OTTHUMG00000008913.1 pseudo_consens +7914 chr1 HAVANA gene 62190522 62190926 405.0 + 0 ENSG00000234088.1 processed_pseudogene RPS15AP7 1 OTTHUMG00000008912.1 pseudo_consens +7915 chr1 HAVANA gene 62208136 62208442 307.0 - 0 ENSG00000237227.1 processed_pseudogene AL162739.1 1 OTTHUMG00000008915.1 pseudo_consens +7916 chr1 ENSEMBL gene 62211557 62211666 110.0 + 0 ENSG00000200174.1 misc_RNA RF00019 3 +7917 chr1 HAVANA gene 62194831 62212328 3849.0 + 0 ENSG00000240563.1 protein_coding L1TD1 2 OTTHUMG00000008914.1 ncRNA_host +7918 chr1 ENSEMBL gene 62298149 62298256 108.0 - 0 ENSG00000201153.1 snRNA RNU6-371P 3 +7919 chr1 HAVANA gene 62236979 62319414 5980.0 - 0 ENSG00000132854.18 protein_coding KANK4 2 OTTHUMG00000008971.1 ncRNA_host +7920 chr1 HAVANA gene 62436297 62451804 4263.0 + 0 ENSG00000162607.12 protein_coding USP1 2 OTTHUMG00000008972.4 +7921 chr1 HAVANA gene 62530636 62530873 238.0 + 0 ENSG00000270549.1 processed_pseudogene AL451044.1 1 OTTHUMG00000184290.1 pseudo_consens +7922 chr1 HAVANA gene 62597487 62606159 3250.0 + 0 ENSG00000132855.4 protein_coding ANGPTL3 2 OTTHUMG00000009146.2 +7923 chr1 HAVANA gene 62607766 62609584 1819.0 + 0 ENSG00000278967.1 TEC AL138847.2 2 OTTHUMG00000187053.1 +7924 chr1 HAVANA gene 62641122 62641667 546.0 - 0 ENSG00000213703.2 processed_pseudogene AL138847.1 1 OTTHUMG00000009137.1 pseudo_consens,overlapping_locus +7925 chr1 HAVANA gene 62454298 62688368 24872.0 - 0 ENSG00000116641.17 protein_coding DOCK7 2 OTTHUMG00000013131.9 overlapping_locus +7926 chr1 HAVANA gene 62688482 62710694 1228.0 + 0 ENSG00000235545.1 antisense AC103923.1 1 OTTHUMG00000009136.1 +7927 chr1 HAVANA gene 62784135 62865513 3110.0 + 0 ENSG00000125703.14 protein_coding ATG4C 2 OTTHUMG00000009142.4 +7928 chr1 HAVANA gene 62896009 62901639 447.0 + 0 ENSG00000234318.1 lincRNA AC099794.1 2 OTTHUMG00000057525.1 +7929 chr1 HAVANA gene 62905180 62905482 303.0 + 0 ENSG00000237163.1 processed_pseudogene AC099794.2 2 OTTHUMG00000009139.1 +7930 chr1 HAVANA gene 62975751 63022504 2005.0 - 0 ENSG00000229537.6 lincRNA LINC01739 1 OTTHUMG00000009147.2 +7931 chr1 HAVANA gene 63024207 63025658 359.0 + 0 ENSG00000227485.1 lincRNA AL162400.1 2 OTTHUMG00000009148.1 +7932 chr1 HAVANA gene 63078081 63079031 157.0 - 0 ENSG00000229225.1 lincRNA AL162400.2 2 OTTHUMG00000013351.1 +7933 chr1 HAVANA gene 63139250 63163153 823.0 + 0 ENSG00000203605.3 lincRNA AC096543.1 2 OTTHUMG00000009144.1 +7934 chr1 ENSEMBL gene 63186336 63186450 115.0 - 0 ENSG00000252259.1 rRNA_pseudogene RNA5SP49 3 +7935 chr1 HAVANA gene 63249920 63251771 859.0 + 0 ENSG00000228734.2 lincRNA AC096543.2 2 OTTHUMG00000009145.2 +7936 chr1 HAVANA gene 63262113 63262707 595.0 + 0 ENSG00000223683.1 processed_pseudogene RPSAP65 1 OTTHUMG00000013352.1 pseudo_consens +7937 chr1 HAVANA gene 63159087 63317274 4490.0 - 0 ENSG00000224209.7 processed_transcript LINC00466 2 OTTHUMG00000009143.3 +7938 chr1 HAVANA gene 63320884 63324441 1208.0 - 0 ENSG00000230798.5 antisense FOXD3-AS1 2 OTTHUMG00000009138.1 +7939 chr1 HAVANA gene 63323041 63325126 2086.0 + 0 ENSG00000187140.5 protein_coding FOXD3 2 OTTHUMG00000009141.1 +7940 chr1 ENSEMBL gene 63326925 63326984 60.0 - 0 ENSG00000275836.1 miRNA MIR6068 3 +7941 chr1 ENSEMBL gene 63338263 63338372 110.0 + 0 ENSG00000252784.1 misc_RNA RF00019 3 +7942 chr1 HAVANA gene 63359823 63361179 1357.0 - 0 ENSG00000236674.1 processed_pseudogene AL049636.1 1 OTTHUMG00000013350.1 pseudo_consens +7943 chr1 HAVANA gene 63367575 63438562 5496.0 + 0 ENSG00000088035.16 protein_coding ALG6 2 OTTHUMG00000009140.8 +7944 chr1 ENSEMBL gene 63529613 63529898 286.0 - 0 ENSG00000264271.2 misc_RNA RN7SL488P 3 +7945 chr1 ENSEMBL gene 63536711 63536770 60.0 - 0 ENSG00000251720.1 snRNA RNU7-123P 3 +7946 chr1 ENSEMBL gene 63548977 63549112 136.0 - 0 ENSG00000276884.1 misc_RNA RF02110 3 +7947 chr1 ENSEMBL gene 63549133 63549216 84.0 - 0 ENSG00000278287.1 misc_RNA RF02109 3 +7948 chr1 ENSEMBL gene 63549227 63549284 58.0 - 0 ENSG00000277565.1 misc_RNA RF02108 3 +7949 chr1 ENSEMBL gene 63549294 63549366 73.0 - 0 ENSG00000275823.1 misc_RNA RF02107 3 +7950 chr1 ENSEMBL gene 63549374 63549463 90.0 - 0 ENSG00000277689.1 misc_RNA RF02106 3 +7951 chr1 ENSEMBL gene 63549489 63549608 120.0 - 0 ENSG00000274199.1 misc_RNA RF02105 3 +7952 chr1 HAVANA gene 63547082 63550636 3555.0 + 0 ENSG00000116652.6 sense_intronic DLEU2L 2 OTTHUMG00000008984.3 overlapping_locus +7953 chr1 HAVANA gene 63523372 63572693 5704.0 + 0 ENSG00000203965.12 protein_coding EFCAB7 2 OTTHUMG00000008983.2 overlapping_locus +7954 chr1 HAVANA gene 63440770 63593721 5459.0 - 0 ENSG00000142856.16 protein_coding ITGB3BP 2 OTTHUMG00000013364.12 ncRNA_host +7955 chr1 ENSEMBL gene 63655743 63656047 305.0 + 0 ENSG00000244256.3 misc_RNA RN7SL130P 3 +7956 chr1 HAVANA gene 63593276 63660245 4090.0 + 0 ENSG00000079739.16 protein_coding PGM1 2 OTTHUMG00000008968.4 ncRNA_host +7957 chr1 HAVANA gene 63788721 63789304 584.0 - 0 ENSG00000177452.7 processed_pseudogene AL161742.1 1 OTTHUMG00000009020.1 pseudo_consens +7958 chr1 HAVANA gene 63843196 63843685 490.0 - 0 ENSG00000228056.3 processed_pseudogene CFL1P3 1 OTTHUMG00000009021.1 pseudo_consens +7959 chr1 ENSEMBL gene 64028894 64029000 107.0 - 0 ENSG00000207190.1 snRNA RNU6-809P 3 +7960 chr1 ENSEMBL gene 64066640 64066741 102.0 - 0 ENSG00000200508.1 misc_RNA RF00019 3 +7961 chr1 HAVANA gene 64094442 64171297 3544.0 - 0 ENSG00000223949.6 antisense ROR1-AS1 2 OTTHUMG00000009024.2 +7962 chr1 HAVANA gene 63774022 64181498 6715.0 + 0 ENSG00000185483.11 protein_coding ROR1 2 OTTHUMG00000009022.1 +7963 chr1 HAVANA gene 64186791 64192685 1031.0 + 0 ENSG00000284928.1 lincRNA AL445205.1 2 OTTHUMG00000192360.1 +7964 chr1 HAVANA gene 64203627 64267368 1838.0 + 0 ENSG00000177414.13 protein_coding UBE2U 2 OTTHUMG00000009023.6 +7965 chr1 ENSEMBL gene 64384398 64384459 62.0 - 0 ENSG00000238653.1 snRNA RNU7-62P 3 +7966 chr1 ENSEMBL gene 64579847 64579923 77.0 + 0 ENSG00000264470.1 miRNA MIR4794 3 +7967 chr1 HAVANA gene 64470792 64693058 6345.0 + 0 ENSG00000158966.14 protein_coding CACHD1 2 OTTHUMG00000009030.5 ncRNA_host +7968 chr1 HAVANA gene 64745095 64833232 6070.0 + 0 ENSG00000162437.14 protein_coding RAVER2 2 OTTHUMG00000009102.5 +7969 chr1 HAVANA gene 64918443 64918683 241.0 + 0 ENSG00000234784.2 processed_pseudogene AL606517.2 1 OTTHUMG00000009303.2 pseudo_consens +7970 chr1 HAVANA gene 64941979 64942365 387.0 + 0 ENSG00000233877.2 processed_pseudogene AL606517.1 1 OTTHUMG00000009305.2 pseudo_consens +7971 chr1 HAVANA gene 64833229 64966504 6317.0 - 0 ENSG00000162434.11 protein_coding JAK1 2 OTTHUMG00000009310.1 +7972 chr1 HAVANA gene 64984608 64986087 1480.0 - 0 ENSG00000185031.6 processed_pseudogene SLC2A3P2 1 OTTHUMG00000009309.2 pseudo_consens,overlapping_locus +7973 chr1 HAVANA gene 64972225 65002489 6617.0 - 0 ENSG00000226891.8 processed_transcript LINC01359 2 OTTHUMG00000009307.4 overlapping_locus +7974 chr1 HAVANA gene 65003470 65004087 618.0 - 0 ENSG00000272506.1 lincRNA AL357078.3 2 OTTHUMG00000185817.1 +7975 chr1 ENSEMBL gene 65022968 65023074 107.0 - 0 ENSG00000212257.1 snRNA RNU6-1176P 3 +7976 chr1 ENSEMBL gene 65057755 65057842 88.0 - 0 ENSG00000265996.1 miRNA MIR3671 3 +7977 chr1 ENSEMBL gene 65058434 65058508 75.0 - 0 ENSG00000199135.1 miRNA MIR101-1 3 +7978 chr1 HAVANA gene 65066627 65067737 310.0 - 0 ENSG00000231485.1 lincRNA AL357078.1 2 OTTHUMG00000009304.1 +7979 chr1 HAVANA gene 65077413 65078131 427.0 - 0 ENSG00000235804.2 processed_pseudogene AL357078.2 1 OTTHUMG00000009306.2 pseudo_consens +7980 chr1 HAVANA gene 65092392 65092614 223.0 - 0 ENSG00000234496.2 processed_pseudogene MRPS21P1 1 OTTHUMG00000009308.2 pseudo_consens +7981 chr1 HAVANA gene 65154480 65154650 171.0 + 0 ENSG00000231622.1 processed_pseudogene RPS29P7 1 OTTHUMG00000009034.1 pseudo_consens,overlapping_locus +7982 chr1 HAVANA gene 65147549 65232145 7578.0 + 0 ENSG00000162433.14 protein_coding AK4 2 OTTHUMG00000009033.2 overlapping_locus +7983 chr1 HAVANA gene 65298755 65298980 226.0 - 0 ENSG00000234144.1 processed_pseudogene COX6CP13 1 OTTHUMG00000009068.1 pseudo_consens,overlapping_locus +7984 chr1 HAVANA gene 65279456 65306521 512.0 - 0 ENSG00000229294.1 antisense AL139294.1 1 OTTHUMG00000009067.1 overlapping_locus +7985 chr1 HAVANA gene 65248219 65415869 6954.0 + 0 ENSG00000116675.15 protein_coding DNAJC6 2 OTTHUMG00000009066.3 +7986 chr1 ENSEMBL gene 65415816 65416006 191.0 + 0 ENSG00000222624.1 snRNA RNU2-15P 3 +7987 chr1 HAVANA gene 65420587 65436007 5237.0 + 0 ENSG00000213625.8 protein_coding LEPROT 2 OTTHUMG00000009065.6 overlapping_locus +7988 chr1 HAVANA gene 65486406 65494188 423.0 + 0 ENSG00000237852.1 sense_intronic AC119800.1 1 OTTHUMG00000009114.1 overlapping_locus +7989 chr1 HAVANA gene 65576129 65578380 1797.0 - 0 ENSG00000224570.1 processed_pseudogene AC097063.1 1 OTTHUMG00000009116.1 pseudo_consens +7990 chr1 HAVANA gene 65420652 65641559 11370.0 + 0 ENSG00000116678.19 protein_coding LEPR 2 OTTHUMG00000009115.1 overlapping_locus +7991 chr1 HAVANA gene 65703962 65714847 2316.0 + 0 ENSG00000285079.1 lincRNA AL513493.1 2 OTTHUMG00000192361.1 +7992 chr1 ENSEMBL gene 65761058 65761352 295.0 - 0 ENSG00000239319.3 misc_RNA RN7SL854P 3 +7993 chr1 HAVANA gene 66042500 66050718 456.0 - 0 ENSG00000227466.1 antisense AL590783.1 2 OTTHUMG00000009087.1 +7994 chr1 ENSEMBL gene 66094461 66094546 86.0 - 0 ENSG00000223152.1 snRNA RNU4-88P 3 +7995 chr1 HAVANA gene 65792514 66374579 8644.0 + 0 ENSG00000184588.17 protein_coding PDE4B 1 OTTHUMG00000009088.5 +7996 chr1 ENSEMBL gene 66628440 66628517 78.0 + 0 ENSG00000264720.3 miRNA MIR3117 3 +7997 chr1 HAVANA gene 66665864 66677027 1156.0 - 0 ENSG00000248458.2 antisense AL139147.1 2 OTTHUMG00000187054.1 +7998 chr1 HAVANA gene 66533383 66748299 10477.0 + 0 ENSG00000118473.21 protein_coding SGIP1 2 OTTHUMG00000009161.8 ncRNA_host +7999 chr1 HAVANA gene 66752459 66778787 3100.0 + 0 ENSG00000152760.9 protein_coding TCTEX1D1 2 OTTHUMG00000009162.3 +8000 chr1 HAVANA gene 66797741 66801256 715.0 - 0 ENSG00000172410.4 protein_coding INSL5 2 OTTHUMG00000009164.1 +8001 chr1 HAVANA gene 66826942 66828558 861.0 + 0 ENSG00000231080.1 antisense AL592161.1 2 OTTHUMG00000009166.1 +8002 chr1 HAVANA gene 66812885 66924887 6704.0 - 0 ENSG00000152763.16 protein_coding WDR78 1 OTTHUMG00000009165.5 +8003 chr1 HAVANA gene 66924895 66988619 8273.0 + 0 ENSG00000198160.14 protein_coding MIER1 2 OTTHUMG00000009194.3 +8004 chr1 HAVANA gene 66999332 67054099 6162.0 - 0 ENSG00000116704.7 protein_coding SLC35D1 2 OTTHUMG00000009360.1 +8005 chr1 ENSEMBL gene 67102645 67102779 135.0 - 0 ENSG00000252433.1 snoRNA RF00322 3 +8006 chr1 HAVANA gene 67121605 67123956 2352.0 - 0 ENSG00000275678.1 sense_intronic AL133320.1 2 OTTHUMG00000188161.1 +8007 chr1 ENSEMBL gene 67196140 67196243 104.0 + 0 ENSG00000253074.1 snRNA RNU6-586P 3 +8008 chr1 HAVANA gene 67092165 67231853 5022.0 - 0 ENSG00000203963.11 protein_coding C1orf141 2 OTTHUMG00000009406.6 ncRNA_host +8009 chr1 HAVANA gene 67138907 67259979 3267.0 + 0 ENSG00000162594.15 protein_coding IL23R 2 OTTHUMG00000009092.5 ncRNA_host +8010 chr1 ENSEMBL gene 67267601 67267726 126.0 - 0 ENSG00000252116.1 snRNA RNU4ATAC4P 3 +8011 chr1 HAVANA gene 67278052 67278779 728.0 + 0 ENSG00000228523.1 processed_pseudogene AL389925.1 1 OTTHUMG00000009093.2 pseudo_consens +8012 chr1 HAVANA gene 67307364 67397090 4423.0 + 0 ENSG00000081985.11 protein_coding IL12RB2 2 OTTHUMG00000009094.6 +8013 chr1 ENSEMBL gene 67417214 67417318 105.0 + 0 ENSG00000223263.1 snRNA RNU6-387P 3 +8014 chr1 HAVANA gene 67407810 67430415 7676.0 - 0 ENSG00000142864.14 protein_coding SERBP1 2 OTTHUMG00000009372.3 +8015 chr1 HAVANA gene 67522347 67532612 805.0 + 0 ENSG00000235200.2 lincRNA LINC01702 2 OTTHUMG00000009373.2 +8016 chr1 ENSEMBL gene 67541127 67541233 107.0 + 0 ENSG00000207504.1 snRNA RNU6-1031P 3 +8017 chr1 HAVANA gene 67561073 67561446 374.0 + 0 ENSG00000238139.2 processed_pseudogene AL590559.1 1 OTTHUMG00000009371.3 pseudo_consens +8018 chr1 ENSEMBL gene 67656831 67657129 299.0 - 0 ENSG00000242482.3 misc_RNA RN7SL392P 3 +8019 chr1 HAVANA gene 67660155 67661013 859.0 - 0 ENSG00000232048.2 processed_pseudogene HNRNPCP9 1 OTTHUMG00000009543.3 pseudo_consens +8020 chr1 HAVANA gene 67685061 67688338 2069.0 + 0 ENSG00000116717.12 protein_coding GADD45A 2 OTTHUMG00000009374.4 +8021 chr1 ENSEMBL gene 67772593 67772653 61.0 - 0 ENSG00000238778.1 snRNA RNU7-80P 3 +8022 chr1 HAVANA gene 67701466 67833467 4724.0 - 0 ENSG00000172380.5 protein_coding GNG12 2 OTTHUMG00000009545.2 ncRNA_host +8023 chr1 HAVANA gene 68043330 68044233 904.0 + 0 ENSG00000235055.3 processed_pseudogene AL157407.1 1 OTTHUMG00000039725.2 pseudo_consens,overlapping_locus +8024 chr1 HAVANA gene 68049360 68049745 386.0 - 0 ENSG00000228431.1 processed_pseudogene ARL5AP3 1 OTTHUMG00000057527.1 pseudo_consens,overlapping_locus +8025 chr1 HAVANA gene 68045896 68051631 2039.0 - 0 ENSG00000162595.6 protein_coding DIRAS3 2 OTTHUMG00000009544.3 overlapping_locus +8026 chr1 HAVANA gene 68161761 68163090 1330.0 - 0 ENSG00000234383.1 processed_pseudogene CTBP2P8 1 OTTHUMG00000009154.1 pseudo_consens,overlapping_locus +8027 chr1 ENSEMBL gene 68183518 68183610 93.0 - 0 ENSG00000221203.1 miRNA MIR1262 3 +8028 chr1 HAVANA gene 67832303 68202987 3465.0 + 0 ENSG00000232284.7 antisense GNG12-AS1 2 OTTHUMG00000009150.1 overlapping_locus +8029 chr1 HAVANA gene 68098473 68233120 4469.0 - 0 ENSG00000116729.13 protein_coding WLS 2 OTTHUMG00000009153.4 ncRNA_host,overlapping_locus +8030 chr1 HAVANA gene 68242474 68243055 582.0 - 0 ENSG00000229133.1 processed_pseudogene RPS7P4 1 OTTHUMG00000009206.1 pseudo_consens +8031 chr1 HAVANA gene 68282388 68282622 235.0 + 0 ENSG00000225242.2 processed_pseudogene COX6B1P7 1 OTTHUMG00000009209.2 pseudo_consens +8032 chr1 HAVANA gene 68375327 68375663 337.0 - 0 ENSG00000237622.1 processed_pseudogene ELOCP18 1 OTTHUMG00000009210.1 pseudo_consens +8033 chr1 HAVANA gene 68381441 68381657 217.0 - 0 ENSG00000229440.1 processed_pseudogene AL139413.1 1 OTTHUMG00000009211.1 pseudo_consens +8034 chr1 HAVANA gene 68428822 68449959 2610.0 - 0 ENSG00000116745.6 protein_coding RPE65 2 OTTHUMG00000009208.1 +8035 chr1 HAVANA gene 68479129 68483539 960.0 + 0 ENSG00000233589.1 antisense AL138789.1 1 OTTHUMG00000009204.1 +8036 chr1 HAVANA gene 68474152 68497221 5904.0 - 0 ENSG00000024526.16 protein_coding DEPDC1 2 OTTHUMG00000009212.4 +8037 chr1 HAVANA gene 68514375 68514669 295.0 - 0 ENSG00000225167.1 processed_pseudogene TXNP2 1 OTTHUMG00000009205.1 pseudo_consens +8038 chr1 HAVANA gene 68496676 68538627 1247.0 + 0 ENSG00000234264.1 antisense DEPDC1-AS1 2 OTTHUMG00000009207.2 +8039 chr1 HAVANA gene 68633701 68640425 2636.0 + 0 ENSG00000285041.1 lincRNA AL035412.1 2 OTTHUMG00000192364.1 +8040 chr1 HAVANA gene 68679202 68943452 2810.0 + 0 ENSG00000285407.1 lincRNA AL033530.1 2 OTTHUMG00000192366.1 +8041 chr1 HAVANA gene 68974010 69023558 716.0 + 0 ENSG00000285473.1 lincRNA AL691520.1 2 OTTHUMG00000192368.1 +8042 chr1 HAVANA gene 69055898 69185003 627.0 + 0 ENSG00000223883.1 lincRNA LINC01707 1 OTTHUMG00000009216.1 +8043 chr1 HAVANA gene 69215835 69249477 1017.0 - 0 ENSG00000235446.2 lincRNA AL512271.1 1 OTTHUMG00000009218.2 +8044 chr1 HAVANA gene 69433255 69435409 458.0 + 0 ENSG00000229639.1 lincRNA LINC01758 2 OTTHUMG00000009217.1 +8045 chr1 HAVANA gene 69606855 69608301 1447.0 - 0 ENSG00000270615.1 processed_pseudogene SGO1P1 1 OTTHUMG00000184292.1 pseudo_consens +8046 chr1 ENSEMBL gene 69879592 69879895 304.0 + 0 ENSG00000240692.3 misc_RNA RN7SL538P 3 +8047 chr1 HAVANA gene 69919322 69920317 996.0 + 0 ENSG00000229359.2 transcribed_processed_pseudogene PIN1P1 1 OTTHUMG00000009268.4 pseudo_consens,overlapping_locus +8048 chr1 HAVANA gene 70013982 70031222 948.0 - 0 ENSG00000237919.5 antisense AL158840.1 1 OTTHUMG00000009266.1 +8049 chr1 HAVANA gene 69568398 70151945 14652.0 + 0 ENSG00000033122.18 protein_coding LRRC7 1 OTTHUMG00000059194.6 ncRNA_host,overlapping_locus +8050 chr1 ENSEMBL gene 70180144 70180440 297.0 - 0 ENSG00000244389.3 misc_RNA RN7SL242P 3 +8051 chr1 HAVANA gene 70144805 70205620 2884.0 - 0 ENSG00000066557.5 protein_coding LRRC40 2 OTTHUMG00000009348.1 ncRNA_host +8052 chr1 HAVANA gene 70218589 70221023 457.0 - 0 ENSG00000228988.1 antisense AL353771.1 2 OTTHUMG00000009341.1 +8053 chr1 HAVANA gene 70205682 70253052 8473.0 + 0 ENSG00000116754.13 protein_coding SRSF11 2 OTTHUMG00000009342.4 +8054 chr1 HAVANA gene 70260588 70354734 4595.0 - 0 ENSG00000118454.12 protein_coding ANKRD13C 2 OTTHUMG00000009343.2 +8055 chr1 HAVANA gene 70359562 70360437 575.0 - 0 ENSG00000226088.1 antisense AL158839.1 1 OTTHUMG00000009344.1 +8056 chr1 HAVANA gene 70354805 70385339 1222.0 + 0 ENSG00000197568.13 protein_coding HHLA3 1 OTTHUMG00000009346.4 +8057 chr1 ENSEMBL gene 70430896 70431178 283.0 + 0 ENSG00000278636.1 misc_RNA RF00017 3 +8058 chr1 HAVANA gene 70411218 70439851 2414.0 + 0 ENSG00000116761.11 protein_coding CTH 2 OTTHUMG00000009352.1 ncRNA_host +8059 chr1 HAVANA gene 70445071 70445536 466.0 + 0 ENSG00000271992.1 lincRNA AL354872.2 2 OTTHUMG00000185818.1 +8060 chr1 HAVANA gene 70530526 70531492 967.0 + 0 ENSG00000233020.1 processed_pseudogene AL354872.1 1 OTTHUMG00000009347.1 pseudo_consens +8061 chr1 HAVANA gene 70660657 70661265 609.0 - 0 ENSG00000237033.2 processed_pseudogene CASP3P1 1 OTTHUMG00000009345.2 pseudo_consens +8062 chr1 HAVANA gene 70715933 70720289 432.0 - 0 ENSG00000226208.1 lincRNA AL513285.1 1 OTTHUMG00000009350.1 +8063 chr1 HAVANA gene 70706453 70786468 2086.0 + 0 ENSG00000229051.1 lincRNA LINC01788 2 OTTHUMG00000009349.1 +8064 chr1 HAVANA gene 70947379 70951493 749.0 + 0 ENSG00000235782.1 antisense AL031429.1 2 OTTHUMG00000009400.1 +8065 chr1 HAVANA gene 71005854 71006502 649.0 - 0 ENSG00000269933.1 sense_intronic AL031429.2 2 OTTHUMG00000183932.1 overlapping_locus +8066 chr1 HAVANA gene 70852353 71047808 9653.0 - 0 ENSG00000050628.20 protein_coding PTGER3 2 OTTHUMG00000009399.5 overlapping_locus +8067 chr1 HAVANA gene 71048855 71067184 967.0 + 0 ENSG00000235079.1 antisense ZRANB2-AS1 1 OTTHUMG00000009659.1 +8068 chr1 ENSEMBL gene 71067631 71067716 86.0 - 0 ENSG00000207721.1 miRNA MIR186 3 +8069 chr1 HAVANA gene 71063291 71081297 4993.0 - 0 ENSG00000132485.13 protein_coding ZRANB2 2 OTTHUMG00000009660.1 ncRNA_host +8070 chr1 HAVANA gene 71367054 71367303 250.0 - 0 ENSG00000226324.1 processed_pseudogene AL358453.1 1 OTTHUMG00000009661.1 pseudo_consens +8071 chr1 HAVANA gene 71081324 71489976 7441.0 + 0 ENSG00000229956.10 processed_transcript ZRANB2-AS2 2 OTTHUMG00000009733.10 overlapping_locus +8072 chr1 HAVANA gene 71570956 71573558 170.0 + 0 ENSG00000231985.1 antisense AL354949.1 2 OTTHUMG00000009734.1 +8073 chr1 HAVANA gene 71738173 71738354 182.0 + 0 ENSG00000271618.1 processed_pseudogene AL359821.1 1 OTTHUMG00000184293.1 pseudo_consens +8074 chr1 HAVANA gene 71794232 71837012 534.0 - 0 ENSG00000228853.1 sense_intronic NEGR1-IT1 2 OTTHUMG00000009732.1 overlapping_locus +8075 chr1 HAVANA gene 72274552 72275159 608.0 + 0 ENSG00000233994.2 processed_pseudogene GDI2P2 1 OTTHUMG00000009454.2 pseudo_consens +8076 chr1 HAVANA gene 71395940 72282734 13406.0 - 0 ENSG00000172260.14 protein_coding NEGR1 2 OTTHUMG00000009698.5 overlapping_locus +8077 chr1 HAVANA gene 72301472 72301829 358.0 + 0 ENSG00000227207.2 processed_pseudogene RPL31P12 1 OTTHUMG00000009455.2 pseudo_consens +8078 chr1 ENSEMBL gene 72717663 72717769 107.0 - 0 ENSG00000212366.1 snRNA RNU6-1246P 3 +8079 chr1 HAVANA gene 72765031 72791282 1382.0 + 0 ENSG00000227016.3 lincRNA AL583808.2 2 OTTHUMG00000009452.4 +8080 chr1 HAVANA gene 72793104 72854475 1065.0 + 0 ENSG00000285808.1 lincRNA AL583808.3 2 OTTHUMG00000193124.1 +8081 chr1 HAVANA gene 72748921 72899140 499.0 - 0 ENSG00000225087.1 lincRNA AL583808.1 2 OTTHUMG00000009453.2 +8082 chr1 HAVANA gene 72979014 72979314 301.0 - 0 ENSG00000280317.1 TEC AL732618.1 2 OTTHUMG00000175851.1 +8083 chr1 HAVANA gene 73104792 73106282 1491.0 + 0 ENSG00000229636.2 processed_pseudogene KRT8P21 1 OTTHUMG00000009547.2 pseudo_consens +8084 chr1 ENSEMBL gene 73191604 73191855 252.0 - 0 ENSG00000251825.1 misc_RNA RN7SKP19 3 +8085 chr1 HAVANA gene 73306170 73355253 4634.0 + 0 ENSG00000233973.6 lincRNA LINC01360 2 OTTHUMG00000009566.2 +8086 chr1 HAVANA gene 73635216 73715214 819.0 + 0 ENSG00000223479.3 lincRNA LINC02238 2 OTTHUMG00000009567.2 +8087 chr1 ENSEMBL gene 73749517 73749623 107.0 - 0 ENSG00000200601.1 rRNA_pseudogene RNA5SP50 3 +8088 chr1 ENSEMBL gene 73883714 73883822 109.0 + 0 ENSG00000252005.2 snRNA RNU4ATAC8P 3 +8089 chr1 HAVANA gene 73787370 73915315 1672.0 - 0 ENSG00000285778.1 lincRNA AL591463.1 2 OTTHUMG00000192800.1 +8090 chr1 HAVANA gene 74026015 74198187 8759.0 - 0 ENSG00000162620.15 protein_coding LRRIQ3 1 OTTHUMG00000009508.4 +8091 chr1 HAVANA gene 74198212 74234086 4180.0 + 0 ENSG00000254685.6 protein_coding FPGT 2 OTTHUMG00000009571.7 overlapping_locus +8092 chr1 HAVANA gene 74341579 74378802 1408.0 - 0 ENSG00000237324.3 antisense AC093158.1 2 OTTHUMG00000037897.3 +8093 chr1 HAVANA gene 74468195 74469543 905.0 + 0 ENSG00000233894.1 antisense AC105271.1 2 OTTHUMG00000009610.1 overlapping_locus +8094 chr1 HAVANA gene 74469878 74512614 3859.0 - 0 ENSG00000162621.6 protein_coding LRRC53 1 OTTHUMG00000009621.3 +8095 chr1 HAVANA gene 74198235 74544393 9896.0 + 0 ENSG00000259030.7 protein_coding FPGT-TNNI3K 1 OTTHUMG00000166281.7 overlapping_locus +8096 chr1 HAVANA gene 74235401 74544428 4719.0 + 0 ENSG00000116783.14 protein_coding TNNI3K 1 OTTHUMG00000171318.3 overlapping_locus +8097 chr1 HAVANA gene 74577430 74626098 5371.0 + 0 ENSG00000234497.5 antisense ERICH3-AS1 2 OTTHUMG00000037896.2 +8098 chr1 HAVANA gene 74568111 74673738 8779.0 - 0 ENSG00000178965.13 protein_coding ERICH3 2 OTTHUMG00000009622.5 +8099 chr1 HAVANA gene 74698769 74699333 565.0 - 0 ENSG00000272864.1 lincRNA AC135803.1 2 OTTHUMG00000186134.1 +8100 chr1 HAVANA gene 74705482 74733408 4085.0 - 0 ENSG00000116791.13 protein_coding CRYZ 2 OTTHUMG00000009620.5 +8101 chr1 HAVANA gene 74733152 74766678 4616.0 + 0 ENSG00000162623.15 protein_coding TYW3 2 OTTHUMG00000009641.5 +8102 chr1 HAVANA gene 74963314 74965118 339.0 + 0 ENSG00000229943.1 lincRNA AC133865.1 2 OTTHUMG00000042097.1 +8103 chr1 HAVANA gene 75122518 75123927 1410.0 - 0 ENSG00000261213.1 lincRNA AC099786.3 2 OTTHUMG00000175853.1 +8104 chr1 HAVANA gene 75129974 75132576 2203.0 - 0 ENSG00000224149.1 antisense AC099786.2 2 OTTHUMG00000009694.1 overlapping_locus +8105 chr1 HAVANA gene 75127830 75133058 670.0 - 0 ENSG00000224127.1 antisense AC099786.1 2 OTTHUMG00000009693.1 overlapping_locus +8106 chr1 HAVANA gene 75128434 75161533 3977.0 + 0 ENSG00000162624.14 protein_coding LHX8 2 OTTHUMG00000009692.3 +8107 chr1 ENSEMBL gene 75183045 75183147 103.0 + 0 ENSG00000206999.1 snRNA RNU6-622P 3 +8108 chr1 HAVANA gene 75521562 75522231 670.0 + 0 ENSG00000224493.1 processed_pseudogene AC093156.1 1 OTTHUMG00000009789.1 pseudo_consens +8109 chr1 ENSEMBL gene 75538015 75538119 105.0 - 0 ENSG00000252338.1 snRNA RNU6-503P 3 +8110 chr1 HAVANA gene 75582099 75582555 457.0 + 0 ENSG00000213579.3 processed_pseudogene AL096829.1 1 OTTHUMG00000009792.1 pseudo_consens +8111 chr1 HAVANA gene 75202131 75611116 6299.0 - 0 ENSG00000137968.16 protein_coding SLC44A5 2 OTTHUMG00000009721.3 ncRNA_host +8112 chr1 HAVANA gene 75641178 75724049 2159.0 - 0 ENSG00000230863.3 transcribed_processed_pseudogene AL137803.1 1 OTTHUMG00000057567.4 pseudo_consens +8113 chr1 HAVANA gene 75743423 75744776 1354.0 - 0 ENSG00000181227.3 processed_pseudogene DLSTP1 1 OTTHUMG00000009785.1 pseudo_consens +8114 chr1 ENSEMBL gene 75787072 75787150 79.0 + 0 ENSG00000206620.1 snoRNA SNORD45C 3 +8115 chr1 HAVANA gene 75724347 75787575 4783.0 + 0 ENSG00000117054.13 protein_coding ACADM 1 OTTHUMG00000009784.3 ncRNA_host,overlapping_locus +8116 chr1 ENSEMBL gene 75787889 75787972 84.0 + 0 ENSG00000207241.1 snoRNA SNORD45A 3 +8117 chr1 ENSEMBL gene 75789477 75789548 72.0 + 0 ENSG00000201487.1 snoRNA SNORD45B 3 +8118 chr1 HAVANA gene 75786197 75795079 5913.0 + 0 ENSG00000137955.15 protein_coding RABGGTB 2 OTTHUMG00000009786.2 ncRNA_host,overlapping_locus +8119 chr1 HAVANA gene 75796882 75913238 3266.0 + 0 ENSG00000057468.6 protein_coding MSH4 2 OTTHUMG00000009788.1 +8120 chr1 HAVANA gene 75918873 75932431 1107.0 - 0 ENSG00000154007.6 protein_coding ASB17 2 OTTHUMG00000009787.1 +8121 chr1 HAVANA gene 75932479 76019356 1121.0 + 0 ENSG00000225605.2 lincRNA AC092813.1 2 OTTHUMG00000009790.2 +8122 chr1 HAVANA gene 76041691 76066228 399.0 + 0 ENSG00000230027.1 lincRNA AC092813.2 2 OTTHUMG00000009791.1 +8123 chr1 HAVANA gene 76353583 76354246 664.0 - 0 ENSG00000223905.1 processed_pseudogene AC103592.1 1 OTTHUMG00000009614.1 pseudo_consens +8124 chr1 HAVANA gene 76074719 76634601 7237.0 + 0 ENSG00000184005.10 protein_coding ST6GALNAC3 2 OTTHUMG00000009615.1 +8125 chr1 HAVANA gene 76636877 76637339 463.0 + 0 ENSG00000272855.1 lincRNA AC104458.1 2 OTTHUMG00000186140.1 +8126 chr1 HAVANA gene 76699789 76700538 750.0 + 0 ENSG00000226415.1 processed_pseudogene TPI1P1 1 OTTHUMG00000009616.1 pseudo_consens +8127 chr1 ENSEMBL gene 76753135 76753240 106.0 + 0 ENSG00000199921.1 snRNA RNU6-161P 3 +8128 chr1 HAVANA gene 76758124 76779267 448.0 - 0 ENSG00000237552.1 lincRNA LINC02567 2 OTTHUMG00000009684.1 +8129 chr1 ENSEMBL gene 77060143 77060202 60.0 + 0 ENSG00000276081.1 miRNA MIR7156 3 +8130 chr1 HAVANA gene 76867441 77065711 4263.0 + 0 ENSG00000117069.14 protein_coding ST6GALNAC5 1 OTTHUMG00000009687.4 ncRNA_host +8131 chr1 HAVANA gene 77067920 77078482 497.0 + 0 ENSG00000230498.1 antisense AL035409.1 1 OTTHUMG00000009688.1 +8132 chr1 HAVANA gene 77129114 77129668 555.0 + 0 ENSG00000226084.5 processed_pseudogene AC113935.1 2 OTTHUMG00000009683.1 +8133 chr1 HAVANA gene 77194825 77195395 571.0 + 0 ENSG00000228187.1 processed_pseudogene AC093433.1 1 OTTHUMG00000009685.1 pseudo_consens +8134 chr1 HAVANA gene 77088990 77219430 5513.0 - 0 ENSG00000142892.14 protein_coding PIGK 2 OTTHUMG00000009686.2 +8135 chr1 HAVANA gene 77346046 77349585 377.0 - 0 ENSG00000233099.1 antisense AC095030.1 2 OTTHUMG00000039775.2 +8136 chr1 ENSEMBL gene 77420325 77420386 62.0 + 0 ENSG00000251767.1 snRNA RNU7-8P 3 +8137 chr1 HAVANA gene 77282051 77559969 6919.0 + 0 ENSG00000154027.18 protein_coding AK5 1 OTTHUMG00000009796.7 ncRNA_host +8138 chr1 ENSEMBL gene 77614869 77614952 84.0 + 0 ENSG00000251785.1 rRNA_pseudogene RNA5SP20 3 +8139 chr1 ENSEMBL gene 77645324 77645618 295.0 + 0 ENSG00000243437.3 misc_RNA RN7SL370P 3 +8140 chr1 HAVANA gene 77562416 77683419 9008.0 - 0 ENSG00000036549.12 protein_coding AC118549.1 1 OTTHUMG00000009652.6 +8141 chr1 HAVANA gene 77695987 77759852 6918.0 - 0 ENSG00000077254.14 protein_coding USP33 2 OTTHUMG00000009651.5 +8142 chr1 HAVANA gene 77773865 77774864 1000.0 - 0 ENSG00000232672.1 processed_pseudogene ACTG1P21 1 OTTHUMG00000039957.1 pseudo_consens +8143 chr1 ENSEMBL gene 77779904 77779999 96.0 + 0 ENSG00000222849.1 rRNA_pseudogene RNA5SP21 3 +8144 chr1 HAVANA gene 77810861 77811781 921.0 - 0 ENSG00000219201.4 processed_pseudogene AC138392.1 2 OTTHUMG00000040532.2 +8145 chr1 HAVANA gene 77847110 77848802 1693.0 + 0 ENSG00000235613.2 processed_pseudogene NSRP1P1 1 OTTHUMG00000040562.2 pseudo_consens,overlapping_locus +8146 chr1 HAVANA gene 77853355 77853893 251.0 + 0 ENSG00000232015.2 processed_pseudogene HSPE1P25 1 OTTHUMG00000040563.2 pseudo_consens,overlapping_locus +8147 chr1 HAVANA gene 77779624 77879539 9594.0 + 0 ENSG00000180488.15 protein_coding MIGA1 1 OTTHUMG00000009766.6 overlapping_locus +8148 chr1 HAVANA gene 77881348 77889539 2292.0 - 0 ENSG00000235927.4 antisense NEXN-AS1 2 OTTHUMG00000040531.4 +8149 chr1 HAVANA gene 77888513 77943895 4436.0 + 0 ENSG00000162614.18 protein_coding NEXN 2 OTTHUMG00000040533.4 +8150 chr1 HAVANA gene 77944055 77979110 5666.0 - 0 ENSG00000162613.16 protein_coding FUBP1 2 OTTHUMG00000040799.5 +8151 chr1 HAVANA gene 78004346 78004554 209.0 - 0 ENSG00000273338.1 antisense AC103591.3 2 OTTHUMG00000186144.1 +8152 chr1 HAVANA gene 77979175 78017964 3783.0 + 0 ENSG00000162616.8 protein_coding DNAJB4 2 OTTHUMG00000040905.5 overlapping_locus +8153 chr1 HAVANA gene 78022565 78024861 1795.0 - 0 ENSG00000285928.1 lincRNA AC103591.4 2 OTTHUMG00000192897.1 +8154 chr1 HAVANA gene 78043383 78044148 766.0 - 0 ENSG00000213561.4 processed_pseudogene AC103591.2 1 OTTHUMG00000041146.3 pseudo_consens +8155 chr1 ENSEMBL gene 78088988 78089083 96.0 - 0 ENSG00000251958.1 snRNA RNU6-1102P 3 +8156 chr1 HAVANA gene 78091499 78092054 556.0 + 0 ENSG00000213560.4 processed_pseudogene AC103591.1 1 OTTHUMG00000041147.2 pseudo_consens,overlapping_locus +8157 chr1 ENSEMBL gene 78094807 78094915 109.0 - 0 ENSG00000202263.1 rRNA_pseudogene RNA5SP22 3 +8158 chr1 HAVANA gene 77979542 78138449 3973.0 + 0 ENSG00000137960.5 protein_coding GIPC2 2 OTTHUMG00000041145.1 overlapping_locus +8159 chr1 HAVANA gene 78170481 78171237 757.0 - 0 ENSG00000233333.2 processed_pseudogene RNFT1P2 1 OTTHUMG00000041117.2 pseudo_consens +8160 chr1 HAVANA gene 78317157 78317263 107.0 - 0 ENSG00000227556.1 unprocessed_pseudogene AC096531.1 2 OTTHUMG00000041106.1 +8161 chr1 HAVANA gene 78229599 78369464 2481.0 + 0 ENSG00000237413.5 processed_transcript MGC27382 2 OTTHUMG00000041107.1 overlapping_locus +8162 chr1 ENSEMBL gene 78375164 78375268 105.0 - 0 ENSG00000212308.1 rRNA_pseudogene RNA5SP23 3 +8163 chr1 HAVANA gene 78303884 78539749 4714.0 + 0 ENSG00000122420.9 protein_coding PTGFR 2 OTTHUMG00000009644.6 overlapping_locus +8164 chr1 HAVANA gene 78619922 78646145 10240.0 + 0 ENSG00000137959.15 protein_coding IFI44L 2 OTTHUMG00000009724.5 +8165 chr1 HAVANA gene 78649796 78664078 2038.0 + 0 ENSG00000137965.10 protein_coding IFI44 2 OTTHUMG00000009723.2 +8166 chr1 HAVANA gene 78666272 78666695 424.0 + 0 ENSG00000238015.2 processed_pseudogene AC104837.2 1 OTTHUMG00000009722.2 pseudo_consens +8167 chr1 HAVANA gene 78749073 78750659 1587.0 + 0 ENSG00000235400.1 processed_pseudogene AC104837.1 1 OTTHUMG00000009739.1 pseudo_consens +8168 chr1 HAVANA gene 78889764 79006718 3677.0 - 0 ENSG00000162618.13 protein_coding ADGRL4 2 OTTHUMG00000009738.2 +8169 chr1 HAVANA gene 79054945 79056055 1111.0 - 0 ENSG00000230787.1 processed_pseudogene PSAT1P3 1 OTTHUMG00000009740.1 pseudo_consens +8170 chr1 HAVANA gene 79323769 79324852 559.0 - 0 ENSG00000282898.1 lincRNA AL353651.2 2 OTTHUMG00000191592.1 +8171 chr1 HAVANA gene 79323769 79324863 355.0 + 0 ENSG00000235011.2 lincRNA AL353651.1 2 OTTHUMG00000009742.2 +8172 chr1 HAVANA gene 79325008 79346445 1507.0 + 0 ENSG00000285462.1 lincRNA AL353651.3 2 OTTHUMG00000192369.1 +8173 chr1 HAVANA gene 79521080 79522203 1124.0 + 0 ENSG00000232676.1 processed_pseudogene ADH5P2 1 OTTHUMG00000009701.1 pseudo_consens +8174 chr1 HAVANA gene 79967733 80051404 597.0 - 0 ENSG00000285409.1 lincRNA AC099671.1 2 OTTHUMG00000192370.1 +8175 chr1 HAVANA gene 80092103 80093237 1135.0 - 0 ENSG00000235756.2 processed_pseudogene AC098657.1 1 OTTHUMG00000009702.2 pseudo_consens +8176 chr1 HAVANA gene 80114943 80116918 1976.0 + 0 ENSG00000260322.1 lincRNA AC098657.2 2 OTTHUMG00000175855.1 +8177 chr1 HAVANA gene 80124004 80124361 263.0 + 0 ENSG00000277670.1 unprocessed_pseudogene AC098657.3 2 OTTHUMG00000187527.1 +8178 chr1 HAVANA gene 80283352 80283970 619.0 + 0 ENSG00000236407.1 processed_pseudogene HMGB1P18 1 OTTHUMG00000010771.1 pseudo_consens +8179 chr1 HAVANA gene 80373364 80374621 580.0 - 0 ENSG00000225598.1 lincRNA AL606519.1 1 OTTHUMG00000009712.1 +8180 chr1 HAVANA gene 80451083 80452004 922.0 - 0 ENSG00000213559.4 processed_pseudogene HNRNPA1P64 1 OTTHUMG00000000524.2 pseudo_consens +8181 chr1 HAVANA gene 80464301 80464718 418.0 - 0 ENSG00000227062.2 processed_pseudogene AL596276.1 1 OTTHUMG00000000525.2 pseudo_consens +8182 chr1 HAVANA gene 80495903 80496233 331.0 + 0 ENSG00000234108.1 processed_pseudogene AL596276.2 1 OTTHUMG00000000523.1 pseudo_consens +8183 chr1 HAVANA gene 80534978 80584363 349.0 - 0 ENSG00000224326.1 lincRNA AL136234.1 2 OTTHUMG00000000506.1 +8184 chr1 HAVANA gene 80535755 80646788 709.0 + 0 ENSG00000234184.5 lincRNA LINC01781 2 OTTHUMG00000000507.1 +8185 chr1 HAVANA gene 81080790 81081171 382.0 + 0 ENSG00000227937.1 processed_pseudogene MTND2P30 2 OTTHUMG00000010773.1 +8186 chr1 HAVANA gene 81098267 81099005 739.0 - 0 ENSG00000229752.1 processed_pseudogene RPL7P10 1 OTTHUMG00000009727.1 pseudo_consens +8187 chr1 HAVANA gene 81208568 81209210 643.0 + 0 ENSG00000235089.1 processed_pseudogene AL357632.1 1 OTTHUMG00000009728.2 pseudo_consens +8188 chr1 HAVANA gene 81209834 81222076 748.0 + 0 ENSG00000285179.1 lincRNA AC093154.1 2 OTTHUMG00000192372.1 +8189 chr1 ENSEMBL gene 81251789 81252096 308.0 + 0 ENSG00000223026.1 misc_RNA RN7SKP247 3 +8190 chr1 HAVANA gene 81426456 81427605 1150.0 + 0 ENSG00000224494.1 processed_pseudogene HNRNPA3P14 1 OTTHUMG00000009838.1 pseudo_consens,overlapping_locus +8191 chr1 HAVANA gene 81501794 81503468 1675.0 + 0 ENSG00000227288.3 processed_pseudogene AL138799.1 1 OTTHUMG00000009839.2 pseudo_consens,overlapping_locus +8192 chr1 HAVANA gene 81505099 81506296 343.0 + 0 ENSG00000227960.1 sense_intronic AL138799.2 2 OTTHUMG00000037783.1 overlapping_locus +8193 chr1 HAVANA gene 81513880 81557702 643.0 - 0 ENSG00000234953.2 antisense AL138799.4 2 OTTHUMG00000009840.1 overlapping_locus +8194 chr1 HAVANA gene 81557121 81557832 521.0 - 0 ENSG00000242598.1 processed_pseudogene MED28P8 1 OTTHUMG00000009841.1 pseudo_consens,overlapping_locus +8195 chr1 HAVANA gene 81596157 81596506 350.0 - 0 ENSG00000234683.1 processed_pseudogene AL138799.3 1 OTTHUMG00000009843.1 pseudo_consens,overlapping_locus +8196 chr1 HAVANA gene 81585941 81625713 641.0 - 0 ENSG00000236676.1 antisense AC117944.1 1 OTTHUMG00000009842.1 overlapping_locus +8197 chr1 HAVANA gene 81721693 81723068 1065.0 + 0 ENSG00000215875.4 transcribed_processed_pseudogene ST13P20 1 OTTHUMG00000009846.2 pseudo_consens,overlapping_locus +8198 chr1 HAVANA gene 81306160 81992436 7754.0 + 0 ENSG00000117114.19 protein_coding ADGRL2 2 OTTHUMG00000009844.3 overlapping_locus +8199 chr1 HAVANA gene 82212413 82848205 6874.0 - 0 ENSG00000233290.2 lincRNA AL157944.1 2 OTTHUMG00000009845.2 +8200 chr1 HAVANA gene 82973882 82986208 1586.0 - 0 ENSG00000236268.5 lincRNA LINC01361 2 OTTHUMG00000009770.1 +8201 chr1 HAVANA gene 82903183 83166815 1878.0 + 0 ENSG00000230817.5 lincRNA LINC01362 2 OTTHUMG00000009769.1 +8202 chr1 HAVANA gene 83397568 83425353 748.0 - 0 ENSG00000285782.1 lincRNA AC116099.1 2 OTTHUMG00000193192.2 +8203 chr1 HAVANA gene 83445967 83462687 1044.0 + 0 ENSG00000231364.2 lincRNA LINC01712 2 OTTHUMG00000009772.2 +8204 chr1 HAVANA gene 83790280 83801465 683.0 + 0 ENSG00000237076.1 lincRNA AL035706.1 1 OTTHUMG00000009931.1 +8205 chr1 HAVANA gene 83575776 83861023 5425.0 - 0 ENSG00000233008.5 lincRNA LINC01725 2 OTTHUMG00000009930.1 +8206 chr1 HAVANA gene 83979118 83984300 2921.0 - 0 ENSG00000233061.1 sense_intronic TTLL7-IT1 2 OTTHUMG00000009973.1 overlapping_locus +8207 chr1 HAVANA gene 83865028 83999150 10543.0 - 0 ENSG00000137941.16 protein_coding TTLL7 2 OTTHUMG00000009932.6 overlapping_locus +8208 chr1 HAVANA gene 84015865 84018371 1401.0 - 0 ENSG00000229486.2 processed_pseudogene AC104454.1 2 OTTHUMG00000009972.2 +8209 chr1 HAVANA gene 84038529 84065031 441.0 + 0 ENSG00000285201.1 lincRNA AC104454.2 2 OTTHUMG00000192371.1 +8210 chr1 HAVANA gene 84076331 84077931 1601.0 - 0 ENSG00000271576.1 lincRNA AL359504.2 2 OTTHUMG00000185155.1 +8211 chr1 HAVANA gene 84085741 84086233 493.0 + 0 ENSG00000213540.3 processed_pseudogene AL359504.1 1 OTTHUMG00000009974.1 pseudo_consens,overlapping_locus +8212 chr1 HAVANA gene 84078062 84238498 6730.0 + 0 ENSG00000142875.19 protein_coding PRKACB 2 OTTHUMG00000009975.4 overlapping_locus +8213 chr1 HAVANA gene 84244334 84244577 244.0 + 0 ENSG00000226970.2 processed_pseudogene AL450063.1 1 OTTHUMG00000009976.1 pseudo_consens +8214 chr1 ENSEMBL gene 84277321 84277457 137.0 + 0 ENSG00000199959.1 snoRNA RF00410 3 +8215 chr1 HAVANA gene 84344678 84349939 905.0 + 0 ENSG00000249237.5 transcribed_unitary_pseudogene AL359273.1 1 OTTHUMG00000057589.2 pseudo_consens,overlapping_locus +8216 chr1 HAVANA gene 84298366 84389957 3455.0 + 0 ENSG00000203943.8 protein_coding SAMD13 1 OTTHUMG00000009859.4 overlapping_locus +8217 chr1 HAVANA gene 84363706 84397831 2412.0 - 0 ENSG00000240520.6 transcribed_unitary_pseudogene UOX 2 OTTHUMG00000009861.3 +8218 chr1 HAVANA gene 84398532 84415018 1476.0 + 0 ENSG00000137976.7 protein_coding DNASE2B 2 OTTHUMG00000009860.1 +8219 chr1 HAVANA gene 84477039 84479157 1318.0 + 0 ENSG00000285361.1 lincRNA AL844170.1 2 OTTHUMG00000192373.1 +8220 chr1 HAVANA gene 84479259 84497790 1728.0 + 0 ENSG00000117133.10 protein_coding RPF1 2 OTTHUMG00000009857.1 +8221 chr1 HAVANA gene 84498325 84506565 1112.0 - 0 ENSG00000174021.10 protein_coding GNG5 2 OTTHUMG00000009858.4 overlapping_locus +8222 chr1 HAVANA gene 84498350 84556688 2686.0 - 0 ENSG00000285851.1 processed_transcript AL359762.3 2 OTTHUMG00000193362.1 overlapping_locus +8223 chr1 HAVANA gene 84506300 84566194 4280.0 + 0 ENSG00000122432.17 protein_coding SPATA1 2 OTTHUMG00000009924.7 +8224 chr1 HAVANA gene 84549606 84574480 6939.0 - 0 ENSG00000117151.12 protein_coding CTBS 2 OTTHUMG00000009922.5 overlapping_locus +8225 chr1 HAVANA gene 84574129 84583620 1183.0 + 0 ENSG00000284882.1 bidirectional_promoter_lncRNA AL359762.1 2 OTTHUMG00000192374.1 +8226 chr1 HAVANA gene 84607099 84610697 1060.0 + 0 ENSG00000285374.1 lincRNA AL359762.2 2 OTTHUMG00000192375.1 +8227 chr1 HAVANA gene 84628230 84635020 2884.0 - 0 ENSG00000180869.4 lincRNA LINC01555 2 OTTHUMG00000009923.1 +8228 chr1 HAVANA gene 84636158 84637106 247.0 - 0 ENSG00000232622.1 processed_pseudogene AC114482.1 1 OTTHUMG00000057591.1 pseudo_consens +8229 chr1 HAVANA gene 84643707 84690803 8639.0 - 0 ENSG00000117155.16 protein_coding SSX2IP 2 OTTHUMG00000009926.6 +8230 chr1 HAVANA gene 84785427 84786714 1172.0 + 0 ENSG00000285325.1 lincRNA AC104169.1 2 OTTHUMG00000192376.1 +8231 chr1 HAVANA gene 84811602 84893213 3543.0 - 0 ENSG00000171517.5 protein_coding LPAR3 2 OTTHUMG00000009925.1 +8232 chr1 HAVANA gene 84925583 84997113 3442.0 - 0 ENSG00000153898.12 protein_coding MCOLN2 2 OTTHUMG00000009954.5 +8233 chr1 HAVANA gene 85018082 85048499 6623.0 - 0 ENSG00000055732.12 protein_coding MCOLN3 2 OTTHUMG00000009955.3 +8234 chr1 HAVANA gene 84999147 85133138 3923.0 + 0 ENSG00000162643.12 protein_coding WDR63 2 OTTHUMG00000009953.5 +8235 chr1 ENSEMBL gene 85133794 85133873 80.0 + 0 ENSG00000266110.1 miRNA MIR4423 3 +8236 chr1 HAVANA gene 85152487 85154203 1717.0 - 0 ENSG00000280099.1 TEC AL603750.1 2 OTTHUMG00000170856.1 +8237 chr1 HAVANA gene 85156873 85201046 6451.0 - 0 ENSG00000097096.8 protein_coding SYDE2 2 OTTHUMG00000009956.4 +8238 chr1 HAVANA gene 85249953 85259672 3420.0 - 0 ENSG00000162642.13 protein_coding C1orf52 2 OTTHUMG00000009966.4 +8239 chr1 ENSEMBL gene 85264296 85264402 107.0 + 0 ENSG00000223254.1 misc_RNA RF00019 3 +8240 chr1 HAVANA gene 85265776 85276904 4618.0 - 0 ENSG00000142867.13 protein_coding BCL10 2 OTTHUMG00000009965.5 +8241 chr1 ENSEMBL gene 85435175 85435284 110.0 - 0 ENSG00000199459.1 misc_RNA RF00019 3 +8242 chr1 HAVANA gene 85276715 85448124 2277.0 + 0 ENSG00000223653.5 antisense AL078459.1 2 OTTHUMG00000010579.1 +8243 chr1 HAVANA gene 85467295 85467660 366.0 + 0 ENSG00000273264.1 lincRNA AL360219.1 2 OTTHUMG00000186153.1 +8244 chr1 HAVANA gene 85482281 85578250 3607.0 - 0 ENSG00000282057.1 lincRNA AC092807.3 2 OTTHUMG00000010578.5 overlapping_locus +8245 chr1 HAVANA gene 85318481 85578363 4572.0 - 0 ENSG00000153904.19 protein_coding DDAH1 2 OTTHUMG00000191181.2 ncRNA_host,overlapping_locus +8246 chr1 HAVANA gene 85578500 85578742 243.0 - 0 ENSG00000272691.1 lincRNA AC092807.2 2 OTTHUMG00000186154.1 +8247 chr1 HAVANA gene 85580761 85583962 2455.0 + 0 ENSG00000142871.16 protein_coding CYR61 2 OTTHUMG00000010577.1 +8248 chr1 ENSEMBL gene 85592280 85592356 77.0 + 0 ENSG00000199934.1 snoRNA RF00136 3 +8249 chr1 HAVANA gene 85599131 85600734 255.0 + 0 ENSG00000230285.1 lincRNA AC092807.1 1 OTTHUMG00000010575.1 +8250 chr1 HAVANA gene 85649423 85708433 6197.0 - 0 ENSG00000117174.10 protein_coding ZNHIT6 2 OTTHUMG00000010576.1 +8251 chr1 ENSEMBL gene 85883680 85883798 119.0 - 0 ENSG00000201620.1 rRNA_pseudogene RNA5SP51 3 +8252 chr1 HAVANA gene 86029854 86030589 736.0 + 0 ENSG00000229505.1 processed_pseudogene AC104455.1 2 OTTHUMG00000010628.1 +8253 chr1 HAVANA gene 85729233 86156943 9568.0 - 0 ENSG00000171502.14 protein_coding COL24A1 2 OTTHUMG00000010629.6 +8254 chr1 HAVANA gene 86288704 86320711 2885.0 - 0 ENSG00000285210.1 lincRNA AL136382.1 2 OTTHUMG00000192378.2 +8255 chr1 ENSEMBL gene 86357632 86357687 56.0 - 0 ENSG00000278281.1 miRNA MIR7856 3 +8256 chr1 HAVANA gene 86346824 86396342 10898.0 - 0 ENSG00000122417.15 protein_coding ODF2L 1 OTTHUMG00000010080.6 ncRNA_host +8257 chr1 HAVANA gene 86404176 86404866 691.0 - 0 ENSG00000231349.2 processed_pseudogene AC119749.1 1 OTTHUMG00000010249.2 pseudo_consens +8258 chr1 HAVANA gene 86424086 86456558 4496.0 + 0 ENSG00000137975.7 protein_coding CLCA2 2 OTTHUMG00000010256.1 +8259 chr1 HAVANA gene 86468368 86500289 3340.0 + 0 ENSG00000016490.15 protein_coding CLCA1 2 OTTHUMG00000010254.1 +8260 chr1 HAVANA gene 86552625 86553342 718.0 - 0 ENSG00000224466.1 processed_pseudogene CDCA4P2 2 OTTHUMG00000010262.1 +8261 chr1 HAVANA gene 86547078 86580754 3447.0 + 0 ENSG00000016602.9 protein_coding CLCA4 2 OTTHUMG00000010260.1 +8262 chr1 HAVANA gene 86634273 86655376 3437.0 + 0 ENSG00000153923.10 transcribed_unprocessed_pseudogene CLCA3P 2 OTTHUMG00000010258.3 +8263 chr1 HAVANA gene 86571181 86696311 2738.0 - 0 ENSG00000236915.2 antisense AL356270.1 2 OTTHUMG00000010247.2 +8264 chr1 HAVANA gene 86703502 86704462 961.0 - 0 ENSG00000261737.1 antisense AL049597.2 2 OTTHUMG00000175864.1 +8265 chr1 HAVANA gene 86704570 86748184 6881.0 + 0 ENSG00000097033.14 protein_coding SH3GLB1 2 OTTHUMG00000010257.2 +8266 chr1 HAVANA gene 86784913 86785467 555.0 + 0 ENSG00000230721.1 processed_pseudogene AL049597.1 1 OTTHUMG00000010259.1 pseudo_consens +8267 chr1 HAVANA gene 86821558 86834169 1638.0 - 0 ENSG00000284846.1 lincRNA AL355981.1 2 OTTHUMG00000192382.1 +8268 chr1 HAVANA gene 86862445 86914424 2103.0 - 0 ENSG00000183291.16 protein_coding SELENOF 2 OTTHUMG00000008520.9 +8269 chr1 HAVANA gene 86932199 86934891 746.0 - 0 ENSG00000267734.1 antisense AL121989.1 2 OTTHUMG00000181763.1 +8270 chr1 HAVANA gene 87044935 87045871 937.0 - 0 ENSG00000235251.2 processed_pseudogene AC093155.2 1 OTTHUMG00000010250.1 pseudo_consens +8271 chr1 HAVANA gene 87045875 87046700 826.0 + 0 ENSG00000225568.1 processed_pseudogene AC093155.1 1 OTTHUMG00000010253.1 pseudo_consens,overlapping_locus +8272 chr1 HAVANA gene 86914648 87109998 7429.0 + 0 ENSG00000153936.16 protein_coding HS2ST1 2 OTTHUMG00000010255.4 overlapping_locus +8273 chr1 HAVANA gene 87129765 87169198 6717.0 + 0 ENSG00000267272.5 lincRNA LINC01140 2 OTTHUMG00000181765.1 overlapping_locus +8274 chr1 HAVANA gene 86993009 87169204 2013.0 + 0 ENSG00000267561.2 protein_coding AC093155.3 2 OTTHUMG00000181764.2 overlapping_locus +8275 chr1 HAVANA gene 87212669 87264741 4926.0 + 0 ENSG00000284240.1 lincRNA AC099062.1 2 OTTHUMG00000191927.2 +8276 chr1 HAVANA gene 87328468 87348923 5833.0 + 0 ENSG00000143013.12 protein_coding LMO4 2 OTTHUMG00000010248.2 +8277 chr1 HAVANA gene 87353524 87371655 889.0 - 0 ENSG00000227290.1 lincRNA LINC01364 2 OTTHUMG00000010252.1 +8278 chr1 ENSEMBL gene 87453240 87453373 134.0 - 0 ENSG00000199318.1 rRNA_pseudogene RNA5SP52 3 +8279 chr1 HAVANA gene 87805286 87808372 3087.0 - 0 ENSG00000279778.1 TEC AL445437.1 2 OTTHUMG00000175865.1 +8280 chr1 HAVANA gene 88313153 88313302 150.0 + 0 ENSG00000270507.1 processed_pseudogene AL049861.1 1 OTTHUMG00000184294.1 pseudo_consens +8281 chr1 ENSEMBL gene 88477828 88478114 287.0 - 0 ENSG00000239504.3 misc_RNA RN7SL583P 3 +8282 chr1 HAVANA gene 88498309 88498676 368.0 - 0 ENSG00000230053.2 processed_pseudogene AC093578.1 1 OTTHUMG00000010004.2 pseudo_consens +8283 chr1 ENSEMBL gene 88520000 88520170 171.0 + 0 ENSG00000274321.1 misc_RNA RF02271 3 +8284 chr1 HAVANA gene 88577880 88578201 322.0 + 0 ENSG00000237959.1 processed_pseudogene RPL36AP10 1 OTTHUMG00000010023.1 pseudo_consens +8285 chr1 HAVANA gene 87620803 88685204 13878.0 - 0 ENSG00000237505.7 antisense PKN2-AS1 2 OTTHUMG00000010024.4 ncRNA_host +8286 chr1 ENSEMBL gene 88816779 88816885 107.0 + 0 ENSG00000207234.1 snRNA RNU6-125P 3 +8287 chr1 HAVANA gene 88829102 88829419 318.0 + 0 ENSG00000241975.1 processed_pseudogene ELOCP19 1 OTTHUMG00000010612.1 pseudo_consens,overlapping_locus +8288 chr1 HAVANA gene 88684222 88836255 6897.0 + 0 ENSG00000065243.19 protein_coding PKN2 1 OTTHUMG00000010074.4 ncRNA_host,overlapping_locus +8289 chr1 HAVANA gene 88852932 88891944 2225.0 - 0 ENSG00000137947.11 protein_coding GTF2B 1 OTTHUMG00000010611.3 +8290 chr1 HAVANA gene 88923370 88923844 475.0 + 0 ENSG00000235308.1 processed_pseudogene AL445991.1 2 OTTHUMG00000010615.1 +8291 chr1 HAVANA gene 88935773 88992953 2306.0 - 0 ENSG00000137944.17 protein_coding KYAT3 2 OTTHUMG00000010617.8 overlapping_locus +8292 chr1 HAVANA gene 88979456 88992960 5087.0 - 0 ENSG00000213516.9 protein_coding RBMXL1 2 OTTHUMG00000010661.4 overlapping_locus,retrogene +8293 chr1 ENSEMBL gene 89020246 89020365 120.0 - 0 ENSG00000202385.1 misc_RNA RF00019 3 +8294 chr1 HAVANA gene 89006666 89022894 4297.0 - 0 ENSG00000117226.11 protein_coding GBP3 1 OTTHUMG00000010616.8 ncRNA_host +8295 chr1 HAVANA gene 89052319 89065360 4992.0 - 0 ENSG00000117228.9 protein_coding GBP1 2 OTTHUMG00000010614.3 +8296 chr1 HAVANA gene 89104285 89104767 483.0 - 0 ENSG00000234518.2 processed_pseudogene PTGES3P1 2 OTTHUMG00000192270.1 +8297 chr1 HAVANA gene 89106132 89150456 6276.0 - 0 ENSG00000162645.12 protein_coding GBP2 2 OTTHUMG00000010662.4 overlapping_locus +8298 chr1 HAVANA gene 89131751 89176040 2454.0 - 0 ENSG00000213512.2 protein_coding GBP7 2 OTTHUMG00000010659.3 overlapping_locus +8299 chr1 HAVANA gene 89181148 89198932 6127.0 - 0 ENSG00000162654.8 protein_coding GBP4 2 OTTHUMG00000010663.1 +8300 chr1 HAVANA gene 89203280 89203464 185.0 - 0 ENSG00000284637.1 unprocessed_pseudogene AC099063.3 2 OTTHUMG00000192272.1 +8301 chr1 HAVANA gene 89198714 89207040 1602.0 + 0 ENSG00000284734.1 antisense AC099063.4 2 OTTHUMG00000192339.1 +8302 chr1 HAVANA gene 89260582 89269754 324.0 + 0 ENSG00000237568.1 antisense AC099063.1 2 OTTHUMG00000010124.1 +8303 chr1 HAVANA gene 89258950 89272804 8143.0 - 0 ENSG00000154451.14 protein_coding GBP5 2 OTTHUMG00000010006.3 +8304 chr1 HAVANA gene 89289676 89290337 662.0 - 0 ENSG00000238081.1 processed_pseudogene AC099063.2 1 OTTHUMG00000010126.1 pseudo_consens +8305 chr1 HAVANA gene 89324522 89334880 797.0 + 0 ENSG00000233235.1 unprocessed_pseudogene BX119321.1 2 OTTHUMG00000010127.1 +8306 chr1 HAVANA gene 89364058 89386461 2987.0 + 0 ENSG00000183347.14 protein_coding GBP6 2 OTTHUMG00000010123.1 +8307 chr1 HAVANA gene 89394033 89394665 633.0 + 0 ENSG00000215874.3 processed_pseudogene CAPNS1P1 1 OTTHUMG00000010125.2 pseudo_consens +8308 chr1 HAVANA gene 89407679 89426243 2352.0 + 0 ENSG00000225492.6 transcribed_unprocessed_pseudogene GBP1P1 2 OTTHUMG00000010128.2 +8309 chr1 HAVANA gene 89524836 89597864 8213.0 + 0 ENSG00000197147.13 protein_coding LRRC8B 2 OTTHUMG00000010129.5 +8310 chr1 HAVANA gene 89583241 89632894 2088.0 - 0 ENSG00000231999.6 antisense LRRC8C-DT 1 OTTHUMG00000010130.3 +8311 chr1 HAVANA gene 89661212 89661353 142.0 - 0 ENSG00000226394.2 processed_pseudogene AC093423.1 1 OTTHUMG00000010306.2 pseudo_consens +8312 chr1 HAVANA gene 89629725 89676386 437.0 + 0 ENSG00000230735.1 sense_intronic AC093423.2 2 OTTHUMG00000040465.1 overlapping_locus +8313 chr1 HAVANA gene 89633072 89769903 11724.0 + 0 ENSG00000171488.14 protein_coding LRRC8C 2 OTTHUMG00000010305.5 overlapping_locus +8314 chr1 HAVANA gene 89788914 89790492 509.0 + 0 ENSG00000231613.1 sense_intronic AC099568.1 2 OTTHUMG00000010584.1 overlapping_locus +8315 chr1 HAVANA gene 89820174 89820868 695.0 - 0 ENSG00000272931.1 lincRNA AC099568.2 2 OTTHUMG00000186155.1 +8316 chr1 HAVANA gene 89633140 89933250 654.0 + 0 ENSG00000271949.1 protein_coding AC093423.3 2 OTTHUMG00000185381.1 overlapping_locus +8317 chr1 HAVANA gene 89821014 89936611 4852.0 + 0 ENSG00000171492.14 protein_coding LRRC8D 2 OTTHUMG00000010583.5 overlapping_locus +8318 chr1 HAVANA gene 89939601 89940147 547.0 + 0 ENSG00000272672.1 lincRNA AL391497.1 2 OTTHUMG00000186158.1 +8319 chr1 ENSEMBL gene 89987713 89987944 232.0 - 0 ENSG00000252797.1 misc_RNA RN7SKP272 3 +8320 chr1 HAVANA gene 89993593 89994321 729.0 - 0 ENSG00000228175.3 processed_pseudogene GEMIN8P4 1 OTTHUMG00000010673.1 pseudo_consens +8321 chr1 HAVANA gene 89995112 90035531 10984.0 + 0 ENSG00000162664.16 protein_coding ZNF326 1 OTTHUMG00000010675.4 +8322 chr1 ENSEMBL gene 90253456 90253559 104.0 - 0 ENSG00000212459.1 snRNA RNU6-695P 3 +8323 chr1 HAVANA gene 90510910 90533472 231.0 - 0 ENSG00000229201.1 lincRNA AC092783.1 2 OTTHUMG00000010017.1 +8324 chr1 ENSEMBL gene 90657750 90657964 215.0 + 0 ENSG00000199666.2 snoRNA SNORD3G 3 +8325 chr1 HAVANA gene 90711539 90717237 1979.0 - 0 ENSG00000143032.7 protein_coding BARHL2 2 OTTHUMG00000010020.2 +8326 chr1 HAVANA gene 90841587 90849472 754.0 + 0 ENSG00000285532.1 lincRNA AC091614.2 2 OTTHUMG00000193036.2 +8327 chr1 HAVANA gene 90782983 90851657 4212.0 - 0 ENSG00000233593.8 processed_transcript AL590094.1 2 OTTHUMG00000010018.3 +8328 chr1 HAVANA gene 90851759 90855253 1547.0 + 0 ENSG00000225446.2 lincRNA LINC01763 2 OTTHUMG00000010019.2 +8329 chr1 HAVANA gene 90860550 90862920 879.0 - 0 ENSG00000272094.1 lincRNA AC091614.1 2 OTTHUMG00000185352.1 +8330 chr1 HAVANA gene 90892992 90893612 621.0 - 0 ENSG00000232882.1 processed_pseudogene PHKA1P1 1 OTTHUMG00000057595.1 pseudo_consens +8331 chr1 HAVANA gene 90915298 91022272 7604.0 - 0 ENSG00000122482.20 protein_coding ZNF644 2 OTTHUMG00000010078.3 +8332 chr1 HAVANA gene 91023919 91024804 886.0 + 0 ENSG00000232393.1 processed_pseudogene RPL5P6 1 OTTHUMG00000010077.1 pseudo_consens +8333 chr1 ENSEMBL gene 91261625 91261724 100.0 + 0 ENSG00000206817.1 misc_RNA RF00019 3 +8334 chr1 HAVANA gene 91328369 91329513 1145.0 + 0 ENSG00000215873.2 processed_pseudogene FEN1P1 1 OTTHUMG00000010098.1 pseudo_consens +8335 chr1 HAVANA gene 91260766 91404869 5827.0 - 0 ENSG00000162669.15 protein_coding HFM1 2 OTTHUMG00000010093.5 +8336 chr1 HAVANA gene 91500893 91525764 3557.0 + 0 ENSG00000097046.12 protein_coding CDC7 2 OTTHUMG00000047810.3 +8337 chr1 HAVANA gene 91534666 91535593 928.0 - 0 ENSG00000241318.3 processed_pseudogene WDR82P2 1 OTTHUMG00000010094.3 pseudo_consens +8338 chr1 HAVANA gene 91600171 91600321 151.0 + 0 ENSG00000229067.1 processed_pseudogene AL714022.1 1 OTTHUMG00000010100.1 pseudo_consens +8339 chr1 HAVANA gene 91642516 91644082 1567.0 + 0 ENSG00000203914.4 processed_pseudogene HSP90B3P 1 OTTHUMG00000010095.2 pseudo_consens +8340 chr1 ENSEMBL gene 91829774 91830066 293.0 - 0 ENSG00000239794.3 misc_RNA RN7SL653P 3 +8341 chr1 HAVANA gene 91680343 91906335 8705.0 - 0 ENSG00000069702.10 protein_coding TGFBR3 2 OTTHUMG00000010097.5 ncRNA_host +8342 chr1 HAVANA gene 91949371 92014426 4334.0 + 0 ENSG00000137948.18 protein_coding BRDT 2 OTTHUMG00000010113.5 +8343 chr1 HAVANA gene 92029982 92063536 2251.0 + 0 ENSG00000172031.6 protein_coding EPHX4 2 OTTHUMG00000010114.1 +8344 chr1 HAVANA gene 92066306 92067839 1534.0 + 0 ENSG00000233228.1 unitary_pseudogene LPCAT2BP 1 OTTHUMG00000010112.2 pseudo_consens +8345 chr1 HAVANA gene 92074533 92075441 909.0 - 0 ENSG00000230667.5 protein_coding SETSIP 2 OTTHUMG00000010287.4 retrogene +8346 chr1 HAVANA gene 92114803 92115796 994.0 - 0 ENSG00000224678.3 processed_pseudogene GAPDHP46 1 OTTHUMG00000010290.3 pseudo_consens +8347 chr1 HAVANA gene 92125301 92126462 1162.0 + 0 ENSG00000233401.1 processed_pseudogene PRKAR1AP1 1 OTTHUMG00000010291.2 pseudo_consens,overlapping_locus +8348 chr1 HAVANA gene 92080305 92184725 6041.0 + 0 ENSG00000189195.12 protein_coding BTBD8 2 OTTHUMG00000191888.4 +8349 chr1 HAVANA gene 92189237 92190707 1293.0 + 0 ENSG00000273487.1 lincRNA AC104836.1 2 OTTHUMG00000186163.1 +8350 chr1 HAVANA gene 92203148 92203991 844.0 + 0 ENSG00000226773.1 processed_pseudogene AL663109.1 2 OTTHUMG00000010286.1 +8351 chr1 HAVANA gene 92229018 92229435 418.0 - 0 ENSG00000233125.3 processed_pseudogene ACTBP12 1 OTTHUMG00000010284.5 pseudo_consens +8352 chr1 HAVANA gene 92217940 92245813 1061.0 + 0 ENSG00000203910.8 protein_coding C1orf146 2 OTTHUMG00000010285.3 +8353 chr1 HAVANA gene 92246402 92298987 2910.0 - 0 ENSG00000174842.16 protein_coding GLMN 2 OTTHUMG00000010283.8 +8354 chr1 HAVANA gene 92298965 92402056 17142.0 + 0 ENSG00000122484.8 protein_coding RPAP2 2 OTTHUMG00000010288.2 +8355 chr1 ENSEMBL gene 92402389 92402685 297.0 - 0 ENSG00000242764.3 misc_RNA RN7SL824P 3 +8356 chr1 HAVANA gene 92474762 92486876 3301.0 - 0 ENSG00000162676.11 protein_coding GFI1 2 OTTHUMG00000010897.1 +8357 chr1 HAVANA gene 92580476 92580821 346.0 - 0 ENSG00000223787.2 processed_pseudogene AL354890.1 1 OTTHUMG00000010896.2 pseudo_consens,overlapping_locus +8358 chr1 HAVANA gene 92647048 92647630 583.0 - 0 ENSG00000229992.1 processed_pseudogene HMGB3P9 1 OTTHUMG00000010900.1 pseudo_consens,overlapping_locus +8359 chr1 ENSEMBL gene 92700819 92700934 116.0 - 0 ENSG00000201317.1 snRNA RNU4-59P 3 +8360 chr1 HAVANA gene 92732000 92733257 797.0 + 0 ENSG00000225505.1 processed_pseudogene AC104332.1 1 OTTHUMG00000010901.1 pseudo_consens +8361 chr1 HAVANA gene 92749175 92749330 156.0 - 0 ENSG00000234202.2 processed_pseudogene AC104332.2 2 OTTHUMG00000010893.2 overlapping_locus +8362 chr1 HAVANA gene 92755794 92756956 1163.0 + 0 ENSG00000223896.2 processed_pseudogene CCNJP2 1 OTTHUMG00000010898.3 pseudo_consens +8363 chr1 HAVANA gene 92508696 92792404 8276.0 - 0 ENSG00000067208.14 protein_coding EVI5 2 OTTHUMG00000010895.4 ncRNA_host,overlapping_locus +8364 chr1 ENSEMBL gene 92837289 92837383 95.0 + 0 ENSG00000206680.1 snoRNA SNORD21 3 +8365 chr1 ENSEMBL gene 92840719 92840851 133.0 + 0 ENSG00000207523.1 snoRNA SNORA66 3 +8366 chr1 HAVANA gene 92831983 92841924 3717.0 + 0 ENSG00000122406.13 protein_coding RPL5 2 OTTHUMG00000010899.10 ncRNA_host +8367 chr1 ENSEMBL gene 92846059 92846182 124.0 + 0 ENSG00000207022.1 snoRNA RF00432 3 +8368 chr1 HAVANA gene 92930696 92934098 3403.0 + 0 ENSG00000229052.2 transcribed_processed_pseudogene AL449283.1 1 OTTHUMG00000010903.2 pseudo_consens +8369 chr1 HAVANA gene 92832737 92961522 3091.0 - 0 ENSG00000154511.11 protein_coding FAM69A 2 OTTHUMG00000010894.2 +8370 chr1 ENSEMBL gene 92969604 92969710 107.0 - 0 ENSG00000252121.1 snRNA RNU6-970P 3 +8371 chr1 ENSEMBL gene 92974827 92975114 288.0 - 0 ENSG00000239710.3 misc_RNA RN7SL692P 3 +8372 chr1 ENSEMBL gene 93010257 93010351 95.0 + 0 ENSG00000252752.1 snRNA RNU6-210P 3 +8373 chr1 ENSEMBL gene 93026252 93026542 291.0 + 0 ENSG00000222664.1 misc_RNA RN7SKP123 3 +8374 chr1 ENSEMBL gene 93027410 93027506 97.0 - 0 ENSG00000251837.1 misc_RNA RF00019 3 +8375 chr1 HAVANA gene 93079235 93139081 5909.0 + 0 ENSG00000143033.17 protein_coding MTF2 2 OTTHUMG00000010161.7 +8376 chr1 HAVANA gene 93149742 93180728 9423.0 - 0 ENSG00000117500.12 protein_coding TMED5 2 OTTHUMG00000010162.4 +8377 chr1 HAVANA gene 93190740 93191060 321.0 - 0 ENSG00000237003.1 processed_pseudogene AC126124.2 1 OTTHUMG00000010600.1 pseudo_consens +8378 chr1 HAVANA gene 93199755 93199939 185.0 - 0 ENSG00000225297.1 processed_pseudogene AC126124.1 1 OTTHUMG00000010601.1 pseudo_consens +8379 chr1 HAVANA gene 93179919 93278730 5633.0 + 0 ENSG00000122483.17 protein_coding CCDC18 1 OTTHUMG00000010598.6 +8380 chr1 HAVANA gene 93278961 93279129 169.0 - 0 ENSG00000229567.1 processed_pseudogene AL139421.1 1 OTTHUMG00000010599.1 pseudo_consens,overlapping_locus +8381 chr1 HAVANA gene 93262186 93346025 4786.0 - 0 ENSG00000223745.7 processed_transcript CCDC18-AS1 2 OTTHUMG00000010705.6 overlapping_locus +8382 chr1 HAVANA gene 93345888 93369498 10949.0 + 0 ENSG00000117505.12 protein_coding DR1 2 OTTHUMG00000010862.2 +8383 chr1 HAVANA gene 93384487 93384998 512.0 - 0 ENSG00000229635.1 processed_pseudogene AL137159.1 1 OTTHUMG00000010861.1 pseudo_consens +8384 chr1 ENSEMBL gene 93385711 93385817 107.0 + 0 ENSG00000207379.1 misc_RNA RF00019 3 +8385 chr1 ENSEMBL gene 93488333 93488452 120.0 - 0 ENSG00000212601.1 rRNA_pseudogene RNA5SP53 3 +8386 chr1 HAVANA gene 93448131 93554661 5798.0 + 0 ENSG00000137942.16 protein_coding FNBP1L 2 OTTHUMG00000010863.4 +8387 chr1 HAVANA gene 93592199 93605573 1954.0 + 0 ENSG00000224093.5 antisense AL109613.1 1 OTTHUMG00000010302.1 +8388 chr1 ENSEMBL gene 93846832 93846911 80.0 + 0 ENSG00000211575.3 miRNA MIR760 3 +8389 chr1 HAVANA gene 93561786 93847150 5042.0 - 0 ENSG00000137936.17 protein_coding BCAR3 2 OTTHUMG00000010301.4 +8390 chr1 HAVANA gene 93847174 93848939 1766.0 + 0 ENSG00000260464.1 bidirectional_promoter_lncRNA AL049796.1 2 OTTHUMG00000175883.1 +8391 chr1 HAVANA gene 93866283 93879918 7519.0 - 0 ENSG00000067334.13 protein_coding DNTTIP2 2 OTTHUMG00000010268.6 +8392 chr1 HAVANA gene 93885205 93909456 5420.0 - 0 ENSG00000023909.9 protein_coding GCLM 2 OTTHUMG00000010562.1 +8393 chr1 HAVANA gene 93921268 93921667 400.0 - 0 ENSG00000223490.2 processed_pseudogene CHCHD2P5 1 OTTHUMG00000057597.2 pseudo_consens +8394 chr1 HAVANA gene 93922574 93923945 1058.0 - 0 ENSG00000234099.1 unprocessed_pseudogene MTND4P11 2 OTTHUMG00000010569.2 +8395 chr1 HAVANA gene 93924386 93924716 331.0 - 0 ENSG00000235794.1 unprocessed_pseudogene MTND3P21 2 OTTHUMG00000010568.2 +8396 chr1 HAVANA gene 93924743 93925385 643.0 - 0 ENSG00000232752.1 unprocessed_pseudogene MTCO3P21 2 OTTHUMG00000010567.2 +8397 chr1 HAVANA gene 93925406 93926072 667.0 - 0 ENSG00000229842.2 unprocessed_pseudogene MTATP6P13 2 OTTHUMG00000010566.2 overlapping_locus +8398 chr1 HAVANA gene 93926032 93926188 157.0 - 0 ENSG00000250890.1 unprocessed_pseudogene AL117351.2 2 OTTHUMG00000012161.1 overlapping_locus +8399 chr1 HAVANA gene 93926615 93927569 677.0 - 0 ENSG00000236689.1 unprocessed_pseudogene MTCO2P21 2 OTTHUMG00000010565.2 +8400 chr1 HAVANA gene 93927714 93928302 589.0 - 0 ENSG00000226960.1 unprocessed_pseudogene MTCO1P21 2 OTTHUMG00000010563.2 +8401 chr1 HAVANA gene 93934479 93935244 766.0 - 0 ENSG00000233129.1 processed_pseudogene AL117351.1 2 OTTHUMG00000010564.1 +8402 chr1 HAVANA gene 93992835 94121132 8201.0 - 0 ENSG00000198691.12 protein_coding ABCA4 2 OTTHUMG00000010622.4 +8403 chr1 HAVANA gene 94145111 94145619 352.0 + 0 ENSG00000233482.1 antisense AC093579.1 2 OTTHUMG00000010623.1 +8404 chr1 ENSEMBL gene 94150738 94151080 343.0 + 0 ENSG00000264963.2 misc_RNA RN7SL440P 3 +8405 chr1 HAVANA gene 94148988 94275068 15524.0 - 0 ENSG00000137962.12 protein_coding ARHGAP29 2 OTTHUMG00000010643.3 +8406 chr1 HAVANA gene 94302038 94303022 985.0 + 0 ENSG00000178596.10 processed_pseudogene GAPDHP29 1 OTTHUMG00000010649.2 pseudo_consens +8407 chr1 HAVANA gene 94318479 94324569 592.0 - 0 ENSG00000236098.1 lincRNA AC097059.2 1 OTTHUMG00000010651.1 +8408 chr1 HAVANA gene 94247866 94334848 980.0 + 0 ENSG00000226835.2 lincRNA AC097059.1 1 OTTHUMG00000010648.2 +8409 chr1 HAVANA gene 94406395 94406882 488.0 - 0 ENSG00000232918.2 processed_pseudogene AC118469.1 1 OTTHUMG00000010653.2 pseudo_consens +8410 chr1 HAVANA gene 94418455 94518666 7519.0 + 0 ENSG00000117528.12 protein_coding ABCD3 2 OTTHUMG00000010717.2 +8411 chr1 HAVANA gene 94529225 94541800 2875.0 - 0 ENSG00000117525.13 protein_coding F3 2 OTTHUMG00000010716.3 +8412 chr1 HAVANA gene 94585556 94592297 2171.0 - 0 ENSG00000223675.1 lincRNA AC093117.1 2 OTTHUMG00000010718.1 +8413 chr1 HAVANA gene 94650544 94651378 835.0 - 0 ENSG00000232857.2 processed_pseudogene KATNBL1P2 1 OTTHUMG00000010704.2 pseudo_consens,overlapping_locus +8414 chr1 ENSEMBL gene 94745860 94745900 41.0 - 0 ENSG00000263526.1 miRNA MIR378G 3 +8415 chr1 HAVANA gene 94613814 94855426 10245.0 - 0 ENSG00000224081.8 transcribed_processed_pseudogene SLC44A3-AS1 2 OTTHUMG00000010701.3 overlapping_locus +8416 chr1 HAVANA gene 94820342 94895246 2869.0 + 0 ENSG00000143036.16 protein_coding SLC44A3 1 OTTHUMG00000010700.6 +8417 chr1 HAVANA gene 94896949 94927278 2838.0 - 0 ENSG00000117519.15 protein_coding CNN3 2 OTTHUMG00000010783.4 +8418 chr1 HAVANA gene 94927566 94963270 1012.0 + 0 ENSG00000235501.5 antisense AC105942.1 2 OTTHUMG00000010780.2 +8419 chr1 HAVANA gene 95061596 95067545 1096.0 + 0 ENSG00000230427.1 antisense AC095033.1 1 OTTHUMG00000010779.1 +8420 chr1 HAVANA gene 94974407 95072945 9633.0 - 0 ENSG00000172339.9 protein_coding ALG14 2 OTTHUMG00000010781.3 +8421 chr1 ENSEMBL gene 95125511 95125609 99.0 - 0 ENSG00000206679.1 misc_RNA RF00019 3 +8422 chr1 HAVANA gene 95120147 95138554 420.0 + 0 ENSG00000231992.1 sense_intronic AC092802.3 2 OTTHUMG00000010848.1 overlapping_locus +8423 chr1 HAVANA gene 95117338 95197607 7402.0 + 0 ENSG00000152078.9 protein_coding TMEM56 2 OTTHUMG00000010847.2 overlapping_locus +8424 chr1 HAVANA gene 95163219 95233982 2505.0 - 0 ENSG00000226026.5 antisense AC092802.1 2 OTTHUMG00000010849.1 +8425 chr1 HAVANA gene 95117923 95247225 1961.0 + 0 ENSG00000271092.5 protein_coding TMEM56-RWDD3 2 OTTHUMG00000184628.1 overlapping_locus +8426 chr1 HAVANA gene 95234155 95247225 1982.0 + 0 ENSG00000122481.16 protein_coding RWDD3 2 OTTHUMG00000010910.1 overlapping_locus +8427 chr1 HAVANA gene 95243167 95278940 1418.0 - 0 ENSG00000228852.6 antisense AC092802.2 1 OTTHUMG00000010851.4 +8428 chr1 HAVANA gene 95310928 95318263 382.0 - 0 ENSG00000228504.1 lincRNA LINC01760 1 OTTHUMG00000010911.1 +8429 chr1 HAVANA gene 95351251 95352648 1155.0 - 0 ENSG00000230434.2 lincRNA LINC01650 1 OTTHUMG00000010912.2 +8430 chr1 HAVANA gene 95356229 95381000 879.0 - 0 ENSG00000237954.7 lincRNA AL445218.1 2 OTTHUMG00000010913.4 +8431 chr1 HAVANA gene 95474737 95479356 2755.0 + 0 ENSG00000233907.1 lincRNA LINC01761 2 OTTHUMG00000010909.1 +8432 chr1 HAVANA gene 95743096 95759470 287.0 + 0 ENSG00000271252.1 lincRNA AL683887.1 2 OTTHUMG00000184190.1 overlapping_locus +8433 chr1 HAVANA gene 95510116 95782342 2182.0 + 0 ENSG00000228971.2 lincRNA AL356479.1 2 OTTHUMG00000010665.3 overlapping_locus +8434 chr1 HAVANA gene 95937901 96022880 2240.0 + 0 ENSG00000237435.9 lincRNA AC099566.1 1 OTTHUMG00000010691.9 +8435 chr1 ENSEMBL gene 96225901 96226060 160.0 + 0 ENSG00000200800.1 snRNA RNU1-130P 3 +8436 chr1 HAVANA gene 96254069 96374125 1994.0 - 0 ENSG00000231987.1 lincRNA LINC01787 2 OTTHUMG00000010690.2 +8437 chr1 HAVANA gene 96390652 96391393 742.0 + 0 ENSG00000225923.1 processed_pseudogene AC092393.1 1 OTTHUMG00000010711.1 pseudo_consens +8438 chr1 HAVANA gene 96418594 96418933 340.0 + 0 ENSG00000234422.1 processed_pseudogene UBE2WP1 1 OTTHUMG00000010709.1 pseudo_consens +8439 chr1 HAVANA gene 96446930 96448318 1389.0 + 0 ENSG00000228502.1 processed_pseudogene EEF1A1P11 1 OTTHUMG00000010710.1 pseudo_consens +8440 chr1 ENSEMBL gene 96583209 96583527 319.0 + 0 ENSG00000241992.3 misc_RNA RN7SL831P 3 +8441 chr1 HAVANA gene 96584422 96584727 306.0 - 0 ENSG00000234226.5 processed_pseudogene NDUFS5P2 1 OTTHUMG00000010687.2 pseudo_consens +8442 chr1 HAVANA gene 96678874 96679620 747.0 - 0 ENSG00000137970.7 processed_pseudogene RPL7P9 2 OTTHUMG00000010686.1 +8443 chr1 ENSEMBL gene 96695856 96696167 312.0 - 0 ENSG00000223229.1 misc_RNA RN7SKP270 3 +8444 chr1 HAVANA gene 96721665 96823738 12937.0 + 0 ENSG00000117569.18 protein_coding PTBP2 2 OTTHUMG00000010685.2 +8445 chr1 HAVANA gene 97095923 97322955 1479.0 + 0 ENSG00000232878.3 antisense DPYD-AS1 2 OTTHUMG00000039682.2 +8446 chr1 HAVANA gene 97394154 97420141 401.0 - 0 ENSG00000232542.1 sense_intronic DPYD-IT1 2 OTTHUMG00000039679.1 overlapping_locus +8447 chr1 HAVANA gene 97545701 97546958 1258.0 + 0 ENSG00000228057.1 processed_pseudogene SEC63P1 1 OTTHUMG00000039678.1 pseudo_consens +8448 chr1 HAVANA gene 97585862 97586294 433.0 + 0 ENSG00000226128.1 processed_pseudogene RPL26P9 1 OTTHUMG00000039677.1 pseudo_consens +8449 chr1 HAVANA gene 97774669 97775026 358.0 + 0 ENSG00000230718.1 processed_pseudogene AC114878.1 2 OTTHUMG00000039681.1 +8450 chr1 HAVANA gene 97796921 97798066 974.0 + 0 ENSG00000235777.1 antisense DPYD-AS2 2 OTTHUMG00000039680.1 +8451 chr1 HAVANA gene 97855575 97856825 1251.0 + 0 ENSG00000270911.1 processed_pseudogene AC114878.2 1 OTTHUMG00000184295.1 pseudo_consens +8452 chr1 HAVANA gene 97967005 97968814 1810.0 - 0 ENSG00000259946.1 lincRNA BX005019.1 2 OTTHUMG00000175887.1 +8453 chr1 HAVANA gene 97077743 97995000 7131.0 - 0 ENSG00000188641.13 protein_coding DPYD 2 OTTHUMG00000039683.5 overlapping_locus +8454 chr1 ENSEMBL gene 98045242 98045351 110.0 - 0 ENSG00000284247.1 miRNA MIR2682 3 +8455 chr1 ENSEMBL gene 98046070 98046171 102.0 - 0 ENSG00000284202.1 miRNA MIR137 3 +8456 chr1 HAVANA gene 97933474 98049863 7172.0 - 0 ENSG00000225206.9 lincRNA MIR137HG 2 OTTHUMG00000010680.4 ncRNA_host,overlapping_locus +8457 chr1 HAVANA gene 98052077 98054592 1784.0 - 0 ENSG00000285922.1 lincRNA AC104453.1 2 OTTHUMG00000192944.1 +8458 chr1 HAVANA gene 98077000 98077468 469.0 + 0 ENSG00000233557.2 processed_pseudogene NFU1P2 1 OTTHUMG00000010679.2 pseudo_consens +8459 chr1 HAVANA gene 98210747 98272658 2229.0 + 0 ENSG00000226053.1 lincRNA LINC01776 2 OTTHUMG00000010681.1 +8460 chr1 HAVANA gene 98660388 98661059 672.0 - 0 ENSG00000280040.1 TEC AC095031.1 2 OTTHUMG00000186070.1 +8461 chr1 HAVANA gene 98661701 98760500 2067.0 + 0 ENSG00000162627.16 protein_coding SNX7 2 OTTHUMG00000010723.6 +8462 chr1 HAVANA gene 98890245 99005032 4571.0 - 0 ENSG00000117598.11 protein_coding PLPPR5 2 OTTHUMG00000010738.3 +8463 chr1 HAVANA gene 99008218 99008474 257.0 + 0 ENSG00000227034.1 processed_pseudogene AL445433.1 1 OTTHUMG00000010721.1 pseudo_consens,overlapping_locus +8464 chr1 HAVANA gene 99004276 99243009 2946.0 + 0 ENSG00000232825.2 antisense AL445433.2 2 OTTHUMG00000010766.3 overlapping_locus +8465 chr1 HAVANA gene 99263953 99309590 5540.0 + 0 ENSG00000117600.12 protein_coding PLPPR4 2 OTTHUMG00000010763.2 +8466 chr1 HAVANA gene 99464378 99464776 399.0 + 0 ENSG00000233983.2 processed_pseudogene AL365220.1 1 OTTHUMG00000010765.2 pseudo_consens +8467 chr1 HAVANA gene 99472332 99600995 1045.0 - 0 ENSG00000224445.3 lincRNA LINC01708 2 OTTHUMG00000010769.3 +8468 chr1 HAVANA gene 99645943 99694541 8244.0 + 0 ENSG00000099260.10 protein_coding PALMD 2 OTTHUMG00000010764.2 +8469 chr1 HAVANA gene 99698242 99699178 572.0 + 0 ENSG00000223656.1 processed_pseudogene HMGB3P10 1 OTTHUMG00000010767.1 pseudo_consens +8470 chr1 HAVANA gene 99708632 99766631 3958.0 - 0 ENSG00000156869.13 protein_coding FRRS1 2 OTTHUMG00000010768.5 +8471 chr1 ENSEMBL gene 99784740 99784885 146.0 - 0 ENSG00000201491.1 snRNA RNU4-75P 3 +8472 chr1 ENSEMBL gene 99791662 99791753 92.0 + 0 ENSG00000202254.1 misc_RNA RF00019 3 +8473 chr1 HAVANA gene 99842610 99842761 152.0 + 0 ENSG00000231996.1 processed_pseudogene AC096949.1 1 OTTHUMG00000010806.1 pseudo_consens +8474 chr1 HAVANA gene 99850084 99924023 8434.0 + 0 ENSG00000162688.16 protein_coding AGL 2 OTTHUMG00000010803.2 +8475 chr1 HAVANA gene 99968383 99969864 655.0 - 0 ENSG00000228084.1 antisense AC118553.1 1 OTTHUMG00000010804.1 +8476 chr1 ENSEMBL gene 99978939 99979045 107.0 + 0 ENSG00000212248.1 snRNA RNU6-750P 3 +8477 chr1 ENSEMBL gene 100000637 100000739 103.0 - 0 ENSG00000202259.1 snRNA RNU6-1318P 3 +8478 chr1 HAVANA gene 99969351 100035637 18238.0 + 0 ENSG00000117620.14 protein_coding SLC35A3 1 OTTHUMG00000010805.9 ncRNA_host,overlapping_locus +8479 chr1 HAVANA gene 99970011 100083321 5765.0 + 0 ENSG00000283761.1 protein_coding AC118553.2 2 OTTHUMG00000191982.2 ncRNA_host,overlapping_locus +8480 chr1 HAVANA gene 100038097 100083377 2943.0 + 0 ENSG00000156875.13 protein_coding MFSD14A 2 OTTHUMG00000010755.2 overlapping_locus +8481 chr1 HAVANA gene 100057990 100084471 384.0 - 0 ENSG00000241073.1 antisense AC093019.2 2 OTTHUMG00000010753.1 overlapping_locus +8482 chr1 HAVANA gene 100099239 100099490 252.0 + 0 ENSG00000226952.1 processed_pseudogene AC093019.1 1 OTTHUMG00000010840.1 pseudo_consens +8483 chr1 HAVANA gene 100083563 100132955 3972.0 - 0 ENSG00000156876.9 protein_coding SASS6 2 OTTHUMG00000010754.3 overlapping_locus +8484 chr1 HAVANA gene 100133150 100150497 4133.0 + 0 ENSG00000122435.9 protein_coding TRMT13 2 OTTHUMG00000010841.4 +8485 chr1 HAVANA gene 100148449 100178273 1991.0 - 0 ENSG00000122477.12 protein_coding LRRC39 2 OTTHUMG00000010839.2 +8486 chr1 HAVANA gene 100196816 100197051 236.0 + 0 ENSG00000271415.1 processed_pseudogene RPL23AP90 1 OTTHUMG00000184296.1 pseudo_consens +8487 chr1 HAVANA gene 100213293 100213670 378.0 + 0 ENSG00000225169.1 processed_pseudogene BRI3P1 1 OTTHUMG00000010919.1 pseudo_consens +8488 chr1 HAVANA gene 100249090 100249311 222.0 + 0 ENSG00000230287.3 processed_pseudogene AL445928.1 2 OTTHUMG00000010918.1 +8489 chr1 HAVANA gene 100186919 100249834 11303.0 - 0 ENSG00000137992.14 protein_coding DBT 2 OTTHUMG00000010921.2 +8490 chr1 HAVANA gene 100220488 100253414 3788.0 + 0 ENSG00000285530.1 antisense AL445928.2 2 OTTHUMG00000192916.1 +8491 chr1 HAVANA gene 100251528 100266179 2776.0 - 0 ENSG00000224616.2 lincRNA RTCA-AS1 2 OTTHUMG00000040490.2 +8492 chr1 ENSEMBL gene 100281241 100281308 68.0 + 0 ENSG00000207750.1 miRNA MIR553 3 +8493 chr1 HAVANA gene 100266207 100292769 3037.0 + 0 ENSG00000137996.12 protein_coding RTCA 2 OTTHUMG00000010920.2 ncRNA_host +8494 chr1 HAVANA gene 100331804 100332617 814.0 - 0 ENSG00000215871.2 processed_pseudogene AC104457.1 1 OTTHUMG00000010983.1 pseudo_consens +8495 chr1 HAVANA gene 100344477 100345242 467.0 + 0 ENSG00000223906.1 lincRNA AC104457.2 2 OTTHUMG00000010984.1 overlapping_locus +8496 chr1 HAVANA gene 100393033 100394026 674.0 - 0 ENSG00000234332.1 processed_pseudogene BCAS2P2 1 OTTHUMG00000010985.1 pseudo_consens +8497 chr1 HAVANA gene 100462399 100485997 592.0 - 0 ENSG00000228086.1 antisense AL589990.1 2 OTTHUMG00000010986.1 +8498 chr1 HAVANA gene 100345001 100520278 6511.0 + 0 ENSG00000079335.19 protein_coding CDC14A 2 OTTHUMG00000010987.15 overlapping_locus +8499 chr1 HAVANA gene 100538137 100542018 3491.0 + 0 ENSG00000181656.6 protein_coding GPR88 2 OTTHUMG00000010981.1 +8500 chr1 HAVANA gene 100586649 100587431 783.0 - 0 ENSG00000213421.4 processed_pseudogene AC099670.1 1 OTTHUMG00000010988.2 pseudo_consens +8501 chr1 HAVANA gene 100627049 100640613 497.0 - 0 ENSG00000230402.2 lincRNA LINC01349 2 OTTHUMG00000040491.2 +8502 chr1 HAVANA gene 100628230 100641723 1414.0 + 0 ENSG00000285525.1 lincRNA AC099670.3 2 OTTHUMG00000193038.1 +8503 chr1 HAVANA gene 100651947 100652267 321.0 + 0 ENSG00000224685.1 processed_pseudogene AC099670.2 1 OTTHUMG00000010989.1 pseudo_consens +8504 chr1 HAVANA gene 100719742 100739045 6049.0 + 0 ENSG00000162692.11 protein_coding VCAM1 2 OTTHUMG00000010982.5 +8505 chr1 HAVANA gene 100894928 100895356 429.0 + 0 ENSG00000273204.1 antisense AC104506.1 2 OTTHUMG00000186355.1 +8506 chr1 HAVANA gene 100872372 100895998 4834.0 - 0 ENSG00000162694.13 protein_coding EXTL2 2 OTTHUMG00000011814.2 +8507 chr1 HAVANA gene 100941017 100941995 979.0 - 0 ENSG00000230946.3 processed_pseudogene HNRNPA1P68 1 OTTHUMG00000057599.2 pseudo_consens +8508 chr1 HAVANA gene 100896076 100981753 8376.0 + 0 ENSG00000162695.11 protein_coding SLC30A7 1 OTTHUMG00000011815.2 +8509 chr1 HAVANA gene 100995473 100996260 671.0 + 0 ENSG00000235795.1 antisense AC093157.2 2 OTTHUMG00000010830.1 +8510 chr1 HAVANA gene 100989623 101026088 2970.0 - 0 ENSG00000117543.20 protein_coding DPH5 2 OTTHUMG00000010829.2 +8511 chr1 HAVANA gene 101025878 101087268 2840.0 + 0 ENSG00000233184.6 antisense AC093157.1 2 OTTHUMG00000010831.2 +8512 chr1 ENSEMBL gene 101133153 101133339 187.0 + 0 ENSG00000252765.1 scaRNA RF00424 3 +8513 chr1 HAVANA gene 101190520 101190994 475.0 + 0 ENSG00000271578.1 processed_pseudogene AC119501.1 1 OTTHUMG00000184301.1 pseudo_consens +8514 chr1 HAVANA gene 101235683 101236528 403.0 - 0 ENSG00000225938.1 antisense AL109741.1 1 OTTHUMG00000010942.1 +8515 chr1 HAVANA gene 101236865 101243713 5223.0 + 0 ENSG00000170989.9 protein_coding S1PR1 2 OTTHUMG00000010835.2 +8516 chr1 HAVANA gene 101256274 101256616 343.0 + 0 ENSG00000228399.1 processed_pseudogene AL109741.2 1 OTTHUMG00000010832.1 pseudo_consens +8517 chr1 HAVANA gene 101270875 101271363 489.0 - 0 ENSG00000173810.9 processed_pseudogene PPIAP7 1 OTTHUMG00000010833.2 pseudo_consens +8518 chr1 HAVANA gene 101323337 101390303 1238.0 + 0 ENSG00000231671.1 lincRNA LINC01307 1 OTTHUMG00000010834.1 +8519 chr1 ENSEMBL gene 101728642 101728737 96.0 - 0 ENSG00000252530.1 snRNA RNU6-965P 3 +8520 chr1 HAVANA gene 101786340 101787219 880.0 - 0 ENSG00000183298.5 processed_pseudogene RPSAP19 2 OTTHUMG00000010943.1 +8521 chr1 HAVANA gene 101639548 101787572 1586.0 + 0 ENSG00000226715.3 lincRNA LINC01709 1 OTTHUMG00000010944.3 +8522 chr1 ENSEMBL gene 101859851 101859957 107.0 + 0 ENSG00000252717.1 snRNA RNU6-352P 3 +8523 chr1 HAVANA gene 101882516 101882894 379.0 + 0 ENSG00000271277.1 processed_pseudogene AL356280.1 2 OTTHUMG00000184310.1 +8524 chr1 HAVANA gene 101893105 101894047 943.0 + 0 ENSG00000162699.5 processed_pseudogene DNAJA1P5 1 OTTHUMG00000010945.2 pseudo_consens +8525 chr1 HAVANA gene 101802574 101997030 4483.0 - 0 ENSG00000118733.16 protein_coding OLFM3 2 OTTHUMG00000010941.2 +8526 chr1 HAVANA gene 102199739 102389630 657.0 - 0 ENSG00000233359.1 lincRNA AC114485.1 2 OTTHUMG00000010865.1 +8527 chr1 HAVANA gene 102763322 102853842 931.0 - 0 ENSG00000230864.1 lincRNA AC099567.1 2 OTTHUMG00000010873.2 +8528 chr1 HAVANA gene 103100143 103100704 562.0 - 0 ENSG00000234257.1 processed_pseudogene SOD2P1 1 OTTHUMG00000010923.1 pseudo_consens +8529 chr1 HAVANA gene 102876467 103108872 9091.0 - 0 ENSG00000060718.21 protein_coding COL11A1 2 OTTHUMG00000010872.10 +8530 chr1 HAVANA gene 103414879 103425465 418.0 + 0 ENSG00000230759.1 lincRNA AC095032.2 2 OTTHUMG00000041349.1 +8531 chr1 ENSEMBL gene 103523562 103523879 318.0 + 0 ENSG00000222069.1 misc_RNA RN7SKP285 3 +8532 chr1 HAVANA gene 103418079 103525483 638.0 - 0 ENSG00000224613.6 bidirectional_promoter_lncRNA AC095032.1 2 OTTHUMG00000041348.2 +8533 chr1 HAVANA gene 103525691 103555239 6867.0 + 0 ENSG00000185946.15 protein_coding RNPC3 2 OTTHUMG00000166613.2 overlapping_locus +8534 chr1 HAVANA gene 103569553 103570674 1122.0 + 0 ENSG00000236085.1 processed_pseudogene ACTG1P4 1 OTTHUMG00000011022.1 pseudo_consens,overlapping_locus +8535 chr1 HAVANA gene 103553815 103579534 7491.0 + 0 ENSG00000240038.6 protein_coding AMY2B 2 OTTHUMG00000011024.6 overlapping_locus +8536 chr1 HAVANA gene 103616811 103625780 1898.0 + 0 ENSG00000243480.7 protein_coding AMY2A 2 OTTHUMG00000011023.3 +8537 chr1 HAVANA gene 103655290 103664554 2505.0 + 0 ENSG00000237763.9 protein_coding AMY1A 2 OTTHUMG00000011020.7 +8538 chr1 HAVANA gene 103668071 103668268 198.0 - 0 ENSG00000234441.1 unprocessed_pseudogene AC105272.1 2 OTTHUMG00000011025.1 +8539 chr1 HAVANA gene 103687415 103696680 2334.0 - 0 ENSG00000174876.16 protein_coding AMY1B 2 OTTHUMG00000011021.2 +8540 chr1 HAVANA gene 103713723 103719871 1023.0 + 0 ENSG00000227408.1 unprocessed_pseudogene AMYP1 2 OTTHUMG00000011044.1 +8541 chr1 HAVANA gene 103750406 103758690 1632.0 + 0 ENSG00000187733.6 protein_coding AMY1C 2 OTTHUMG00000011045.1 +8542 chr1 HAVANA gene 103926567 103927806 1240.0 + 0 ENSG00000225191.1 processed_pseudogene AL136455.1 1 OTTHUMG00000011046.1 pseudo_consens +8543 chr1 HAVANA gene 104153306 104153830 525.0 - 0 ENSG00000228347.1 processed_pseudogene FTLP17 1 OTTHUMG00000011049.1 pseudo_consens +8544 chr1 HAVANA gene 104072983 104226678 3146.0 + 0 ENSG00000215869.4 transcribed_processed_pseudogene AC092506.1 1 OTTHUMG00000011048.2 pseudo_consens +8545 chr1 HAVANA gene 104998406 105032365 619.0 - 0 ENSG00000285981.1 lincRNA AL591888.1 2 OTTHUMG00000193035.2 +8546 chr1 HAVANA gene 105433994 105434821 828.0 + 0 ENSG00000225036.1 processed_pseudogene CDK4P1 2 OTTHUMG00000011002.1 +8547 chr1 HAVANA gene 105587575 105618958 2997.0 - 0 ENSG00000230768.8 lincRNA LINC01676 2 OTTHUMG00000011003.6 +8548 chr1 HAVANA gene 105698039 105698218 180.0 + 0 ENSG00000227850.1 processed_pseudogene SEPT2P1 1 OTTHUMG00000011007.1 pseudo_consens +8549 chr1 HAVANA gene 105890693 105891430 593.0 - 0 ENSG00000237897.2 processed_pseudogene AL512844.2 2 OTTHUMG00000011005.1 +8550 chr1 HAVANA gene 105891739 105893517 1779.0 + 0 ENSG00000232952.1 processed_pseudogene AL512844.1 1 OTTHUMG00000011004.3 pseudo_consens +8551 chr1 HAVANA gene 105927624 106028277 2960.0 - 0 ENSG00000233047.6 lincRNA LINC01677 2 OTTHUMG00000011006.3 +8552 chr1 HAVANA gene 106080801 106081379 579.0 - 0 ENSG00000230932.2 processed_pseudogene AL355306.1 1 OTTHUMG00000011034.2 pseudo_consens +8553 chr1 HAVANA gene 105956694 106124564 8646.0 + 0 ENSG00000237480.2 lincRNA AL355306.2 2 OTTHUMG00000011035.2 +8554 chr1 HAVANA gene 106544342 106544744 403.0 - 0 ENSG00000270342.1 processed_pseudogene AL499605.1 1 OTTHUMG00000184314.1 pseudo_consens +8555 chr1 HAVANA gene 106780223 106780435 213.0 + 0 ENSG00000270976.1 processed_pseudogene AL596327.1 2 OTTHUMG00000184318.1 +8556 chr1 HAVANA gene 106802755 106803427 673.0 - 0 ENSG00000233449.1 processed_pseudogene MTATP6P14 2 OTTHUMG00000010957.1 +8557 chr1 HAVANA gene 106804474 106806032 1559.0 - 0 ENSG00000232551.2 processed_pseudogene MTCO1P14 2 OTTHUMG00000010955.3 +8558 chr1 HAVANA gene 106818239 106838167 708.0 + 0 ENSG00000237460.2 lincRNA LINC01661 1 OTTHUMG00000000497.2 +8559 chr1 HAVANA gene 107056679 107067636 4335.0 + 0 ENSG00000198890.8 protein_coding PRMT6 2 OTTHUMG00000010964.3 retrogene +8560 chr1 HAVANA gene 107140007 107483458 9138.0 + 0 ENSG00000162631.18 protein_coding NTNG1 2 OTTHUMG00000010965.4 +8561 chr1 HAVANA gene 107505203 107505448 246.0 + 0 ENSG00000224550.1 processed_pseudogene AC114491.1 1 OTTHUMG00000011031.1 pseudo_consens +8562 chr1 ENSEMBL gene 107897223 107897304 82.0 + 0 ENSG00000275455.1 miRNA MIR7852 3 +8563 chr1 HAVANA gene 107571160 107965144 7271.0 - 0 ENSG00000134215.15 protein_coding VAV3 2 OTTHUMG00000010995.4 +8564 chr1 HAVANA gene 107964443 107994607 619.0 + 0 ENSG00000230489.1 antisense VAV3-AS1 2 OTTHUMG00000010994.1 +8565 chr1 HAVANA gene 108040263 108076020 3711.0 + 0 ENSG00000226822.2 lincRNA AL390036.1 1 OTTHUMG00000011012.2 +8566 chr1 HAVANA gene 108134036 108200849 6548.0 - 0 ENSG00000085491.16 protein_coding SLC25A24 2 OTTHUMG00000011013.7 +8567 chr1 HAVANA gene 108199926 108201491 1566.0 + 0 ENSG00000260879.1 antisense AL359258.2 2 OTTHUMG00000175898.1 overlapping_locus +8568 chr1 HAVANA gene 108200413 108202743 2331.0 + 0 ENSG00000280186.1 TEC AL359258.3 2 OTTHUMG00000175904.1 overlapping_locus +8569 chr1 HAVANA gene 108223341 108244081 2586.0 - 0 ENSG00000196427.13 protein_coding NBPF4 2 OTTHUMG00000011318.5 +8570 chr1 HAVANA gene 108261196 108273689 2481.0 - 0 ENSG00000238122.1 lincRNA AL359258.1 2 OTTHUMG00000011319.2 +8571 chr1 HAVANA gene 108272943 108337853 1882.0 + 0 ENSG00000241361.8 transcribed_unprocessed_pseudogene SLC25A24P1 2 OTTHUMG00000011320.5 overlapping_locus +8572 chr1 HAVANA gene 108375838 108410814 1606.0 + 0 ENSG00000243967.4 transcribed_unprocessed_pseudogene NBPF5P 2 OTTHUMG00000011317.7 overlapping_locus +8573 chr1 HAVANA gene 108383736 108421295 510.0 - 0 ENSG00000238118.1 unprocessed_pseudogene SLC25A24P2 2 OTTHUMG00000039831.1 +8574 chr1 HAVANA gene 108420689 108433184 2481.0 + 0 ENSG00000224698.1 lincRNA AL390038.1 2 OTTHUMG00000039829.1 +8575 chr1 HAVANA gene 108450282 108471002 2586.0 + 0 ENSG00000186086.18 protein_coding NBPF6 2 OTTHUMG00000039830.5 +8576 chr1 HAVANA gene 108495475 108501144 285.0 - 0 ENSG00000283354.1 unprocessed_pseudogene AL392088.2 2 OTTHUMG00000191785.1 +8577 chr1 HAVANA gene 108502358 108503455 1098.0 + 0 ENSG00000227832.1 processed_pseudogene ST13P21 1 OTTHUMG00000011458.1 pseudo_consens +8578 chr1 HAVANA gene 108508574 108509243 670.0 + 0 ENSG00000226483.2 processed_pseudogene AL392088.1 1 OTTHUMG00000011459.2 pseudo_consens +8579 chr1 HAVANA gene 108560089 108644900 9355.0 + 0 ENSG00000162636.15 protein_coding FAM102B 1 OTTHUMG00000010967.3 +8580 chr1 HAVANA gene 108648290 108661526 2426.0 - 0 ENSG00000162639.15 protein_coding HENMT1 2 OTTHUMG00000011123.2 +8581 chr1 HAVANA gene 108661533 108666246 946.0 + 0 ENSG00000285923.1 bidirectional_promoter_lncRNA AL160171.1 2 OTTHUMG00000193071.1 +8582 chr1 HAVANA gene 108692323 108701803 5817.0 + 0 ENSG00000134186.11 protein_coding PRPF38B 2 OTTHUMG00000010991.3 +8583 chr1 HAVANA gene 108734256 108734725 386.0 - 0 ENSG00000232971.2 antisense AL591719.2 2 OTTHUMG00000011121.2 +8584 chr1 HAVANA gene 108712657 108742740 3332.0 + 0 ENSG00000143107.8 protein_coding FNDC7 2 OTTHUMG00000011120.4 +8585 chr1 HAVANA gene 108766841 108767584 744.0 - 0 ENSG00000228076.2 processed_pseudogene AL591719.1 1 OTTHUMG00000011230.2 pseudo_consens +8586 chr1 HAVANA gene 108746674 108809526 5895.0 + 0 ENSG00000116266.10 protein_coding STXBP3 2 OTTHUMG00000011122.3 +8587 chr1 HAVANA gene 108815898 108858228 4915.0 - 0 ENSG00000162641.18 protein_coding AKNAD1 2 OTTHUMG00000011231.8 overlapping_locus +8588 chr1 HAVANA gene 108857217 108858524 608.0 + 0 ENSG00000203897.3 antisense SPATA42 2 OTTHUMG00000011731.1 +8589 chr1 HAVANA gene 108875350 108934545 8099.0 + 0 ENSG00000121957.13 protein_coding GPSM2 2 OTTHUMG00000011730.5 +8590 chr1 HAVANA gene 108929508 108963457 4964.0 - 0 ENSG00000121940.15 protein_coding CLCC1 1 OTTHUMG00000011732.1 overlapping_locus +8591 chr1 HAVANA gene 108837660 108963484 557.0 - 0 ENSG00000274068.1 protein_coding AL449266.1 2 OTTHUMG00000186734.2 overlapping_locus +8592 chr1 HAVANA gene 108986963 108987245 283.0 - 0 ENSG00000237349.1 processed_pseudogene BX679664.2 1 OTTHUMG00000011728.1 pseudo_consens,overlapping_locus +8593 chr1 HAVANA gene 108992282 108992836 555.0 + 0 ENSG00000244716.3 processed_pseudogene BX679664.3 2 OTTHUMG00000057601.1 +8594 chr1 HAVANA gene 109030067 109030319 253.0 + 0 ENSG00000228665.2 processed_pseudogene BX679664.1 1 OTTHUMG00000042361.2 pseudo_consens +8595 chr1 HAVANA gene 108970214 109042113 4423.0 - 0 ENSG00000085433.15 protein_coding WDR47 1 OTTHUMG00000011734.4 overlapping_locus +8596 chr1 HAVANA gene 109046828 109047482 655.0 + 0 ENSG00000228054.2 processed_pseudogene RANP5 1 OTTHUMG00000042362.2 pseudo_consens +8597 chr1 HAVANA gene 109062486 109076002 1400.0 - 0 ENSG00000197780.9 protein_coding TAF13 2 OTTHUMG00000042363.4 +8598 chr1 HAVANA gene 109087971 109090858 2888.0 - 0 ENSG00000273382.1 antisense AL356488.3 2 OTTHUMG00000186359.1 +8599 chr1 HAVANA gene 109089803 109096934 4574.0 + 0 ENSG00000215717.5 protein_coding TMEM167B 2 OTTHUMG00000042364.3 +8600 chr1 ENSEMBL gene 109100193 109100612 420.0 + 0 ENSG00000278249.1 scaRNA SCARNA2 3 +8601 chr1 HAVANA gene 109100193 109100619 427.0 + 0 ENSG00000270066.3 lincRNA AL356488.2 2 OTTHUMG00000184013.1 ncRNA_host +8602 chr1 HAVANA gene 109103535 109104766 609.0 - 0 ENSG00000251484.3 processed_pseudogene AL356488.1 1 OTTHUMG00000011733.3 pseudo_consens +8603 chr1 HAVANA gene 109105951 109113857 1235.0 - 0 ENSG00000179902.12 protein_coding C1orf194 1 OTTHUMG00000011735.3 +8604 chr1 HAVANA gene 109113679 109206781 9300.0 + 0 ENSG00000116299.16 protein_coding KIAA1324 2 OTTHUMG00000011725.5 +8605 chr1 HAVANA gene 109213918 109238169 3836.0 + 0 ENSG00000031698.12 protein_coding SARS 2 OTTHUMG00000011726.3 +8606 chr1 HAVANA gene 109250019 109275750 12349.0 + 0 ENSG00000143126.7 protein_coding CELSR2 2 OTTHUMG00000012003.1 +8607 chr1 HAVANA gene 109279556 109283186 2855.0 - 0 ENSG00000134222.16 protein_coding PSRC1 2 OTTHUMG00000012000.6 +8608 chr1 HAVANA gene 109292365 109307041 1789.0 - 0 ENSG00000221986.6 protein_coding MYBPHL 2 OTTHUMG00000012002.1 +8609 chr1 HAVANA gene 109309568 109397951 9160.0 - 0 ENSG00000134243.11 protein_coding SORT1 2 OTTHUMG00000011999.4 +8610 chr1 HAVANA gene 109399031 109426427 5724.0 - 0 ENSG00000143106.12 protein_coding PSMA5 2 OTTHUMG00000012001.2 +8611 chr1 HAVANA gene 109466628 109482137 3963.0 + 0 ENSG00000143028.8 protein_coding SYPL2 2 OTTHUMG00000010969.1 +8612 chr1 HAVANA gene 109483479 109492804 5232.0 + 0 ENSG00000162650.16 protein_coding ATXN7L2 2 OTTHUMG00000011027.2 +8613 chr1 HAVANA gene 109494052 109502932 5690.0 + 0 ENSG00000174151.14 protein_coding CYB561D1 1 OTTHUMG00000011051.6 +8614 chr1 HAVANA gene 109504175 109509738 5144.0 - 0 ENSG00000181754.6 protein_coding AMIGO1 2 OTTHUMG00000011653.1 +8615 chr1 HAVANA gene 109539906 109543837 582.0 - 0 ENSG00000254942.1 antisense AL355310.3 2 OTTHUMG00000165650.1 +8616 chr1 HAVANA gene 109539872 109548406 5057.0 + 0 ENSG00000156097.12 protein_coding GPR61 1 OTTHUMG00000011633.4 +8617 chr1 ENSEMBL gene 109591534 109591640 107.0 - 0 ENSG00000206832.1 snRNA RNU6V 3 +8618 chr1 HAVANA gene 109596225 109597781 596.0 + 0 ENSG00000225113.1 sense_overlapping AL355310.1 2 OTTHUMG00000011648.3 overlapping_locus +8619 chr1 ENSEMBL gene 109598893 109598967 75.0 + 0 ENSG00000284443.1 miRNA MIR197 3 +8620 chr1 HAVANA gene 109548611 109618321 27174.0 + 0 ENSG00000065135.10 protein_coding GNAI3 2 OTTHUMG00000189112.1 ncRNA_host,overlapping_locus +8621 chr1 HAVANA gene 109603267 109619929 1381.0 - 0 ENSG00000134183.11 protein_coding GNAT2 2 OTTHUMG00000011639.3 +8622 chr1 HAVANA gene 109628417 109630305 688.0 - 0 ENSG00000228703.1 antisense AL355310.2 1 OTTHUMG00000011645.1 +8623 chr1 HAVANA gene 109616104 109632051 6823.0 + 0 ENSG00000116337.15 protein_coding AMPD2 1 OTTHUMG00000011649.6 overlapping_locus +8624 chr1 HAVANA gene 109651370 109652099 730.0 + 0 ENSG00000235045.2 processed_pseudogene RPL7P8 1 OTTHUMG00000011636.2 pseudo_consens +8625 chr1 HAVANA gene 109656081 109674836 5745.0 + 0 ENSG00000168765.16 protein_coding GSTM4 2 OTTHUMG00000011642.1 +8626 chr1 HAVANA gene 109693117 109693742 491.0 - 0 ENSG00000260246.1 antisense AC000032.1 2 OTTHUMG00000172930.1 +8627 chr1 HAVANA gene 109687814 109709039 2512.0 + 0 ENSG00000134184.12 protein_coding GSTM1 1 OTTHUMG00000011635.4 overlapping_locus +8628 chr1 HAVANA gene 109668022 109709551 9116.0 + 0 ENSG00000213366.12 protein_coding GSTM2 2 OTTHUMG00000011638.7 overlapping_locus +8629 chr1 HAVANA gene 109733932 109741038 4750.0 - 0 ENSG00000134202.10 protein_coding GSTM3 2 OTTHUMG00000011640.2 +8630 chr1 HAVANA gene 109750080 109764027 3477.0 - 0 ENSG00000198758.10 protein_coding EPS8L3 2 OTTHUMG00000011651.2 +8631 chr1 HAVANA gene 109725820 109775252 808.0 + 0 ENSG00000241720.2 antisense AL158847.1 1 OTTHUMG00000011632.1 overlapping_locus +8632 chr1 HAVANA gene 109711780 109775428 6061.0 + 0 ENSG00000134201.11 protein_coding GSTM5 2 OTTHUMG00000011644.4 +8633 chr1 HAVANA gene 109810642 109810998 357.0 - 0 ENSG00000224927.2 processed_pseudogene NDUFA5P10 1 OTTHUMG00000011634.2 pseudo_consens +8634 chr1 HAVANA gene 109828355 109871436 476.0 + 0 ENSG00000228420.1 lincRNA LINC01768 1 OTTHUMG00000011637.1 +8635 chr1 HAVANA gene 109884176 109886264 450.0 - 0 ENSG00000235005.1 antisense AL450468.1 2 OTTHUMG00000011641.1 +8636 chr1 HAVANA gene 109895973 109897861 1889.0 + 0 ENSG00000261055.1 lincRNA AL450468.2 2 OTTHUMG00000175953.1 +8637 chr1 HAVANA gene 109910242 109930992 5418.0 + 0 ENSG00000184371.13 protein_coding CSF1 1 OTTHUMG00000011646.3 +8638 chr1 HAVANA gene 109984686 110023741 5113.0 + 0 ENSG00000168710.17 protein_coding AHCYL1 2 OTTHUMG00000011652.3 +8639 chr1 HAVANA gene 110058340 110062555 4216.0 + 0 ENSG00000258634.3 antisense AL160006.1 2 OTTHUMG00000170608.1 overlapping_locus +8640 chr1 HAVANA gene 110059994 110070700 1859.0 - 0 ENSG00000156150.7 protein_coding ALX3 2 OTTHUMG00000011650.3 +8641 chr1 HAVANA gene 110031577 110074641 7352.0 + 0 ENSG00000143093.14 protein_coding STRIP1 2 OTTHUMG00000170607.2 overlapping_locus +8642 chr1 HAVANA gene 110082688 110109719 579.0 + 0 ENSG00000258673.1 antisense LINC01397 2 OTTHUMG00000170609.1 +8643 chr1 HAVANA gene 110112468 110113945 1478.0 + 0 ENSG00000186150.4 protein_coding UBL4B 2 OTTHUMG00000166989.2 +8644 chr1 HAVANA gene 110166186 110172489 997.0 - 0 ENSG00000227091.1 antisense AL355990.1 2 OTTHUMG00000011762.1 +8645 chr1 HAVANA gene 110177643 110178719 508.0 - 0 ENSG00000235526.1 antisense AL355990.2 2 OTTHUMG00000011763.1 +8646 chr1 HAVANA gene 110150486 110202202 6644.0 + 0 ENSG00000197106.6 protein_coding SLC6A17 2 OTTHUMG00000011761.2 +8647 chr1 HAVANA gene 110208834 110209987 748.0 - 0 ENSG00000224965.1 antisense LINC02586 1 OTTHUMG00000040850.1 +8648 chr1 HAVANA gene 110256754 110256930 177.0 + 0 ENSG00000282852.1 processed_pseudogene AL137790.1 1 OTTHUMG00000191498.1 pseudo_consens +8649 chr1 ENSEMBL gene 110272484 110272607 124.0 + 0 ENSG00000200536.1 snoRNA RF00402 3 +8650 chr1 HAVANA gene 110211343 110283100 25042.0 + 0 ENSG00000116396.14 protein_coding KCNC4 1 OTTHUMG00000011037.11 ncRNA_host +8651 chr1 HAVANA gene 110286375 110339171 2611.0 - 0 ENSG00000227963.1 antisense RBM15-AS1 2 OTTHUMG00000011283.1 +8652 chr1 HAVANA gene 110338506 110346681 4670.0 + 0 ENSG00000162775.14 protein_coding RBM15 2 OTTHUMG00000011284.5 +8653 chr1 HAVANA gene 110370154 110373003 2850.0 + 0 ENSG00000273373.1 antisense AL355488.1 2 OTTHUMG00000186360.1 +8654 chr1 HAVANA gene 110362848 110391082 3167.0 - 0 ENSG00000168679.17 protein_coding SLC16A4 1 OTTHUMG00000011285.5 +8655 chr1 HAVANA gene 110401249 110407942 2388.0 - 0 ENSG00000134248.13 protein_coding LAMTOR5 2 OTTHUMG00000011568.5 +8656 chr1 HAVANA gene 110347116 110443817 10755.0 + 0 ENSG00000224699.8 processed_transcript LAMTOR5-AS1 2 OTTHUMG00000019824.9 +8657 chr1 HAVANA gene 110456505 110457354 482.0 - 0 ENSG00000270380.1 antisense AL358215.1 2 OTTHUMG00000184692.1 +8658 chr1 HAVANA gene 110451200 110457354 1338.0 + 0 ENSG00000143125.5 protein_coding PROK1 2 OTTHUMG00000011569.2 +8659 chr1 HAVANA gene 110472543 110474980 960.0 + 0 ENSG00000282887.2 lincRNA AL358215.2 2 OTTHUMG00000191470.2 overlapping_locus +8660 chr1 HAVANA gene 110473756 110488663 1186.0 + 0 ENSG00000283999.1 processed_transcript AL358215.3 2 OTTHUMG00000191928.2 overlapping_locus +8661 chr1 HAVANA gene 110487680 110490258 2351.0 - 0 ENSG00000235407.1 lincRNA CYMP-AS1 2 OTTHUMG00000022783.2 +8662 chr1 HAVANA gene 110480752 110491277 1263.0 + 0 ENSG00000240194.7 transcribed_unitary_pseudogene CYMP 1 OTTHUMG00000022784.4 overlapping_locus +8663 chr1 HAVANA gene 110517217 110519175 1959.0 - 0 ENSG00000143105.7 protein_coding KCNA10 2 OTTHUMG00000022785.2 +8664 chr1 HAVANA gene 110519837 110631474 17379.0 - 0 ENSG00000177301.14 protein_coding KCNA2 1 OTTHUMG00000011567.9 +8665 chr1 HAVANA gene 110653560 110657040 3481.0 - 0 ENSG00000259834.1 lincRNA AL365361.1 2 OTTHUMG00000175965.1 +8666 chr1 HAVANA gene 110672465 110675033 2569.0 - 0 ENSG00000177272.8 protein_coding KCNA3 2 OTTHUMG00000034493.1 +8667 chr1 ENSEMBL gene 110764408 110764506 99.0 - 0 ENSG00000199710.1 misc_RNA RF00019 3 +8668 chr1 HAVANA gene 110848077 110848941 865.0 - 0 ENSG00000237415.2 processed_pseudogene NRBF2P3 1 OTTHUMG00000034490.2 pseudo_consens +8669 chr1 HAVANA gene 110853939 110854892 954.0 + 0 ENSG00000232791.4 unitary_pseudogene OR11I1P 2 OTTHUMG00000034579.2 +8670 chr1 HAVANA gene 110871188 110899928 2152.0 + 0 ENSG00000143119.13 protein_coding CD53 2 OTTHUMG00000048020.4 +8671 chr1 HAVANA gene 110936369 110942353 5985.0 - 0 ENSG00000261654.1 sense_overlapping AL360270.2 2 OTTHUMG00000175996.1 +8672 chr1 HAVANA gene 110943467 110952848 2359.0 + 0 ENSG00000232811.1 antisense AL360270.1 2 OTTHUMG00000034494.1 +8673 chr1 HAVANA gene 110947185 110964079 3621.0 - 0 ENSG00000121931.15 protein_coding LRIF1 2 OTTHUMG00000011913.3 +8674 chr1 HAVANA gene 110963302 110964649 1348.0 + 0 ENSG00000273010.1 antisense AL360270.3 2 OTTHUMG00000186361.1 +8675 chr1 HAVANA gene 111007700 111015530 1315.0 - 0 ENSG00000225672.1 processed_pseudogene CCNT2P1 1 OTTHUMG00000034495.2 pseudo_consens +8676 chr1 ENSEMBL gene 111041834 111041925 92.0 + 0 ENSG00000252760.1 rRNA_pseudogene RNA5SP54 3 +8677 chr1 HAVANA gene 111117333 111140216 3138.0 - 0 ENSG00000156171.14 protein_coding DRAM2 2 OTTHUMG00000011911.6 +8678 chr1 HAVANA gene 111181374 111181491 118.0 - 0 ENSG00000272982.1 antisense AL355816.1 2 OTTHUMG00000186362.1 +8679 chr1 HAVANA gene 111184415 111185061 647.0 - 0 ENSG00000273221.1 antisense AL355816.2 2 OTTHUMG00000186363.1 +8680 chr1 HAVANA gene 111139627 111185102 8413.0 + 0 ENSG00000134255.13 protein_coding CEPT1 2 OTTHUMG00000012357.4 +8681 chr1 HAVANA gene 111187174 111204535 5515.0 - 0 ENSG00000162777.16 protein_coding DENND2D 2 OTTHUMG00000012356.2 +8682 chr1 HAVANA gene 111200771 111243440 3295.0 + 0 ENSG00000064886.13 protein_coding CHI3L2 1 OTTHUMG00000012174.8 +8683 chr1 HAVANA gene 111250254 111256715 995.0 + 0 ENSG00000236040.1 unprocessed_pseudogene CHIAP1 2 OTTHUMG00000034492.1 +8684 chr1 HAVANA gene 111280059 111286116 2837.0 + 0 ENSG00000203878.11 transcribed_unprocessed_pseudogene CHIAP2 2 OTTHUMG00000012173.6 +8685 chr1 HAVANA gene 111290862 111320566 4632.0 + 0 ENSG00000134216.18 protein_coding CHIA 2 OTTHUMG00000011165.3 +8686 chr1 HAVANA gene 111317600 111323981 476.0 - 0 ENSG00000229283.1 antisense AL356387.1 2 OTTHUMG00000011166.1 +8687 chr1 HAVANA gene 111323833 111324075 243.0 + 0 ENSG00000232240.2 processed_pseudogene AL356387.2 2 OTTHUMG00000011167.2 +8688 chr1 HAVANA gene 111346288 111353013 4261.0 + 0 ENSG00000173947.13 protein_coding PIFO 2 OTTHUMG00000011168.1 +8689 chr1 HAVANA gene 111353275 111367409 1133.0 - 0 ENSG00000234020.1 unprocessed_pseudogene CHIAP3 2 OTTHUMG00000011169.1 +8690 chr1 HAVANA gene 111380291 111380571 281.0 + 0 ENSG00000236012.2 processed_pseudogene HIGD1AP12 1 OTTHUMG00000011170.2 pseudo_consens +8691 chr1 HAVANA gene 111382860 111391819 1358.0 - 0 ENSG00000227179.6 transcribed_unprocessed_pseudogene PGCP1 2 OTTHUMG00000011171.2 +8692 chr1 HAVANA gene 111414314 111427777 2567.0 - 0 ENSG00000085465.12 protein_coding OVGP1 2 OTTHUMG00000011746.1 +8693 chr1 HAVANA gene 111431046 111433068 2023.0 - 0 ENSG00000260948.1 sense_overlapping AL390195.2 2 OTTHUMG00000176034.1 +8694 chr1 HAVANA gene 111437514 111438037 524.0 + 0 ENSG00000233337.1 processed_pseudogene UBE2FP3 1 OTTHUMG00000011747.1 pseudo_consens +8695 chr1 HAVANA gene 111438638 111441364 861.0 - 0 ENSG00000243960.1 sense_overlapping AL390195.1 1 OTTHUMG00000011749.1 overlapping_locus +8696 chr1 ENSEMBL gene 111446798 111446908 111.0 + 0 ENSG00000199890.1 misc_RNA RF00019 3 +8697 chr1 HAVANA gene 111439890 111449376 2805.0 - 0 ENSG00000116455.13 protein_coding WDR77 2 OTTHUMG00000011748.2 overlapping_locus +8698 chr1 HAVANA gene 111448864 111462773 3383.0 + 0 ENSG00000116459.10 protein_coding ATP5PB 2 OTTHUMG00000011745.2 +8699 chr1 HAVANA gene 111473792 111478512 2768.0 + 0 ENSG00000143110.11 protein_coding C1orf162 2 OTTHUMG00000011750.1 +8700 chr1 ENSEMBL gene 111490317 111490423 107.0 - 0 ENSG00000200360.1 snRNA RNU6-792P 3 +8701 chr1 HAVANA gene 111499429 111503760 2687.0 - 0 ENSG00000282608.1 protein_coding ADORA3 2 OTTHUMG00000011957.3 overlapping_locus +8702 chr1 HAVANA gene 111483348 111563962 2283.0 - 0 ENSG00000121933.18 protein_coding TMIGD3 1 OTTHUMG00000190810.1 ncRNA_host,overlapping_locus +8703 chr1 HAVANA gene 111599655 111608723 1377.0 - 0 ENSG00000231346.5 lincRNA LINC01160 2 OTTHUMG00000011958.2 +8704 chr1 HAVANA gene 111648291 111649544 1254.0 - 0 ENSG00000215867.4 processed_pseudogene KRT18P57 1 OTTHUMG00000011952.2 pseudo_consens +8705 chr1 ENSEMBL gene 111650431 111650537 107.0 - 0 ENSG00000201028.1 snRNA RNU6-151P 3 +8706 chr1 HAVANA gene 111542218 111716691 5532.0 + 0 ENSG00000116473.14 protein_coding RAP1A 2 OTTHUMG00000011959.2 +8707 chr1 HAVANA gene 111680630 111739424 6290.0 - 0 ENSG00000197852.10 protein_coding INKA2 1 OTTHUMG00000011953.4 overlapping_locus +8708 chr1 HAVANA gene 111739841 111747798 2131.0 + 0 ENSG00000227811.2 bidirectional_promoter_lncRNA INKA2-AS1 1 OTTHUMG00000011954.2 +8709 chr1 HAVANA gene 111745299 111755537 4326.0 - 0 ENSG00000284830.1 bidirectional_promoter_lncRNA AL049557.2 2 OTTHUMG00000192435.1 +8710 chr1 HAVANA gene 111722064 111755824 5865.0 - 0 ENSG00000284755.1 protein_coding AL049557.1 2 OTTHUMG00000192434.1 overlapping_locus +8711 chr1 HAVANA gene 111755245 111768016 6019.0 + 0 ENSG00000064703.11 protein_coding DDX20 2 OTTHUMG00000011956.3 +8712 chr1 HAVANA gene 111853762 111856905 376.0 - 0 ENSG00000232558.1 sense_intronic KCND3-IT1 2 OTTHUMG00000011990.1 overlapping_locus +8713 chr1 HAVANA gene 111909336 111910931 777.0 + 0 ENSG00000237556.1 antisense KCND3-AS1 2 OTTHUMG00000011993.2 +8714 chr1 HAVANA gene 111770662 111989155 7863.0 - 0 ENSG00000171385.9 protein_coding KCND3 2 OTTHUMG00000011989.1 overlapping_locus +8715 chr1 HAVANA gene 111989770 111998842 3590.0 + 0 ENSG00000231437.3 lincRNA LINC01750 1 OTTHUMG00000011992.2 +8716 chr1 HAVANA gene 112177234 112360528 547.0 - 0 ENSG00000231246.1 lincRNA AL445426.1 2 OTTHUMG00000012183.1 +8717 chr1 HAVANA gene 112363281 112363581 301.0 + 0 ENSG00000234388.2 processed_pseudogene TXNP3 1 OTTHUMG00000011153.2 pseudo_consens +8718 chr1 ENSEMBL gene 112371004 112371107 104.0 + 0 ENSG00000238761.1 snoRNA RF01210 3 +8719 chr1 ENSEMBL gene 112461770 112461833 64.0 - 0 ENSG00000283296.1 miRNA MIR4256 3 +8720 chr1 HAVANA gene 112396181 112463456 7404.0 + 0 ENSG00000143079.14 protein_coding CTTNBP2NL 2 OTTHUMG00000011154.4 +8721 chr1 HAVANA gene 112517799 112518441 643.0 - 0 ENSG00000273483.1 antisense AL354760.1 2 OTTHUMG00000186364.1 +8722 chr1 HAVANA gene 112466541 112530165 12561.0 + 0 ENSG00000134245.17 protein_coding WNT2B 2 OTTHUMG00000011157.2 +8723 chr1 HAVANA gene 112523518 112620825 8111.0 - 0 ENSG00000007341.18 protein_coding ST7L 2 OTTHUMG00000011753.7 +8724 chr1 HAVANA gene 112625906 112626224 319.0 - 0 ENSG00000235299.2 processed_pseudogene MRPL53P1 1 OTTHUMG00000011904.2 pseudo_consens +8725 chr1 ENSEMBL gene 112634719 112634784 66.0 - 0 ENSG00000252750.1 snRNA RNU7-70P 3 +8726 chr1 HAVANA gene 112619173 112671619 4130.0 + 0 ENSG00000116489.12 protein_coding CAPZA1 2 OTTHUMG00000011769.2 +8727 chr1 HAVANA gene 112693688 112696621 449.0 - 0 ENSG00000225075.1 antisense AL603832.1 2 OTTHUMG00000011907.1 +8728 chr1 HAVANA gene 112673141 112700746 6509.0 + 0 ENSG00000155363.18 protein_coding MOV10 2 OTTHUMG00000011906.1 +8729 chr1 HAVANA gene 112701106 112707434 4028.0 - 0 ENSG00000155366.16 protein_coding RHOC 1 OTTHUMG00000011905.6 overlapping_locus +8730 chr1 HAVANA gene 112702614 112711433 1078.0 - 0 ENSG00000271810.5 protein_coding AL603832.3 2 OTTHUMG00000185387.2 overlapping_locus +8731 chr1 HAVANA gene 112709994 112715477 2874.0 - 0 ENSG00000155367.15 protein_coding PPM1J 1 OTTHUMG00000012019.5 overlapping_locus +8732 chr1 HAVANA gene 112715672 112717796 2125.0 + 0 ENSG00000261595.1 antisense AL603832.2 2 OTTHUMG00000176040.1 +8733 chr1 HAVANA gene 112720419 112727235 1282.0 + 0 ENSG00000184599.13 protein_coding FAM19A3 2 OTTHUMG00000012020.1 +8734 chr1 HAVANA gene 112748095 112748475 381.0 + 0 ENSG00000234790.1 processed_pseudogene NUTF2P4 1 OTTHUMG00000012021.1 pseudo_consens +8735 chr1 HAVANA gene 112820170 112850643 1823.0 - 0 ENSG00000215866.7 lincRNA LINC01356 2 OTTHUMG00000012022.3 +8736 chr1 HAVANA gene 112850028 112877871 587.0 + 0 ENSG00000224167.1 lincRNA AL390729.1 2 OTTHUMG00000012023.1 +8737 chr1 HAVANA gene 112890767 112890922 156.0 - 0 ENSG00000228040.1 processed_pseudogene AL390729.2 1 OTTHUMG00000012134.1 pseudo_consens +8738 chr1 HAVANA gene 112923423 112924337 915.0 + 0 ENSG00000229020.4 processed_pseudogene AKR7A2P1 1 OTTHUMG00000012135.3 pseudo_consens +8739 chr1 HAVANA gene 112911847 112957013 5312.0 - 0 ENSG00000155380.11 protein_coding SLC16A1 2 OTTHUMG00000012129.2 +8740 chr1 HAVANA gene 112956415 113047055 10138.0 + 0 ENSG00000226419.7 antisense SLC16A1-AS1 2 OTTHUMG00000012128.3 +8741 chr1 HAVANA gene 113011687 113073105 2459.0 - 0 ENSG00000238198.1 lincRNA AL357055.3 2 OTTHUMG00000012130.1 +8742 chr1 HAVANA gene 113125321 113126883 1563.0 - 0 ENSG00000237278.2 processed_pseudogene RLIMP2 2 OTTHUMG00000012132.2 +8743 chr1 HAVANA gene 113073209 113132260 12456.0 + 0 ENSG00000198799.11 protein_coding LRIG2 2 OTTHUMG00000012133.3 +8744 chr1 HAVANA gene 113168994 113169403 410.0 + 0 ENSG00000233839.1 processed_pseudogene AL357055.1 1 OTTHUMG00000012184.1 pseudo_consens +8745 chr1 HAVANA gene 113198825 113199258 434.0 + 0 ENSG00000236887.1 processed_pseudogene AL357055.2 1 OTTHUMG00000012185.1 pseudo_consens +8746 chr1 HAVANA gene 113449700 113450728 1029.0 + 0 ENSG00000232499.2 processed_pseudogene AL391058.1 1 OTTHUMG00000011799.2 pseudo_consens,overlapping_locus +8747 chr1 HAVANA gene 113576757 113576899 143.0 - 0 ENSG00000238256.1 processed_pseudogene MTND5P20 2 OTTHUMG00000011801.1 +8748 chr1 HAVANA gene 113390749 113685923 8180.0 + 0 ENSG00000081026.18 protein_coding MAGI3 1 OTTHUMG00000011737.3 overlapping_locus +8749 chr1 HAVANA gene 113698884 113699631 748.0 - 0 ENSG00000232450.1 transcribed_processed_pseudogene AL133517.1 1 OTTHUMG00000011942.1 pseudo_consens,overlapping_locus +8750 chr1 HAVANA gene 113696831 113759489 7170.0 - 0 ENSG00000116793.15 protein_coding PHTF1 2 OTTHUMG00000011800.2 overlapping_locus +8751 chr1 HAVANA gene 113761832 113812476 6819.0 - 0 ENSG00000081019.13 protein_coding RSBN1 2 OTTHUMG00000011938.3 +8752 chr1 HAVANA gene 113812379 113829171 1080.0 + 0 ENSG00000231128.5 antisense AL137856.1 2 OTTHUMG00000011939.2 +8753 chr1 HAVANA gene 113813811 113871759 4503.0 - 0 ENSG00000134242.15 protein_coding PTPN22 2 OTTHUMG00000011936.2 +8754 chr1 HAVANA gene 113878168 113887547 4251.0 - 0 ENSG00000188761.12 protein_coding BCL2L15 1 OTTHUMG00000011940.4 +8755 chr1 HAVANA gene 113856635 113901237 1734.0 + 0 ENSG00000226167.1 antisense AP4B1-AS1 2 OTTHUMG00000011941.1 +8756 chr1 HAVANA gene 113894748 113905201 5369.0 - 0 ENSG00000134262.12 protein_coding AP4B1 2 OTTHUMG00000011943.4 +8757 chr1 HAVANA gene 113905141 113914086 3940.0 + 0 ENSG00000118655.5 protein_coding DCLRE1B 2 OTTHUMG00000011937.4 +8758 chr1 HAVANA gene 113924000 113929492 3087.0 - 0 ENSG00000235527.6 antisense HIPK1-AS1 1 OTTHUMG00000011982.2 +8759 chr1 HAVANA gene 113929192 113977869 9280.0 + 0 ENSG00000163349.21 protein_coding HIPK1 1 OTTHUMG00000011983.7 +8760 chr1 HAVANA gene 114001433 114002235 565.0 - 0 ENSG00000270780.1 processed_pseudogene AL591742.1 1 OTTHUMG00000184325.1 pseudo_consens +8761 chr1 HAVANA gene 114032393 114034511 2119.0 + 0 ENSG00000282048.1 sense_intronic AL591742.2 2 OTTHUMG00000191422.1 +8762 chr1 HAVANA gene 113979391 114035572 2821.0 + 0 ENSG00000116774.11 protein_coding OLFML3 2 OTTHUMG00000011980.2 +8763 chr1 HAVANA gene 114089291 114153919 5104.0 - 0 ENSG00000134207.16 protein_coding SYT6 2 OTTHUMG00000011755.6 +8764 chr1 HAVANA gene 114206427 114262278 332.0 - 0 ENSG00000232895.2 lincRNA AL121999.1 2 OTTHUMG00000011899.2 +8765 chr1 HAVANA gene 114279011 114279275 265.0 - 0 ENSG00000273698.1 processed_pseudogene MRPL57P1 2 OTTHUMG00000187529.1 +8766 chr1 HAVANA gene 114353986 114355178 864.0 + 0 ENSG00000271419.1 processed_pseudogene AL035410.2 1 OTTHUMG00000184330.1 pseudo_consens +8767 chr1 HAVANA gene 114459934 114460360 427.0 + 0 ENSG00000226984.1 processed_pseudogene AL035410.1 1 OTTHUMG00000011895.1 pseudo_consens +8768 chr1 HAVANA gene 114468315 114469282 968.0 + 0 ENSG00000225650.2 processed_pseudogene EIF2S2P5 1 OTTHUMG00000011896.2 pseudo_consens +8769 chr1 ENSEMBL gene 114490724 114490832 109.0 + 0 ENSG00000201114.1 misc_RNA RF00019 3 +8770 chr1 HAVANA gene 114392777 114511160 9574.0 - 0 ENSG00000197323.11 protein_coding TRIM33 2 OTTHUMG00000011891.2 +8771 chr1 HAVANA gene 114535995 114537840 1523.0 + 0 ENSG00000236480.1 processed_pseudogene PKMP1 1 OTTHUMG00000011897.1 pseudo_consens +8772 chr1 HAVANA gene 114567557 114581639 1299.0 - 0 ENSG00000116752.5 protein_coding BCAS2 2 OTTHUMG00000011898.1 +8773 chr1 HAVANA gene 114582848 114670422 7413.0 - 0 ENSG00000175984.14 protein_coding DENND2C 1 OTTHUMG00000011893.2 +8774 chr1 HAVANA gene 114673090 114695618 3082.0 - 0 ENSG00000116748.21 protein_coding AMPD1 1 OTTHUMG00000011892.8 +8775 chr1 ENSEMBL gene 114697627 114697924 298.0 - 0 ENSG00000242769.3 misc_RNA RN7SL432P 3 +8776 chr1 HAVANA gene 114704469 114716894 4449.0 - 0 ENSG00000213281.4 protein_coding NRAS 2 OTTHUMG00000012059.2 +8777 chr1 ENSEMBL gene 114727720 114727824 105.0 + 0 ENSG00000201900.1 misc_RNA RNY1P13 3 +8778 chr1 HAVANA gene 114716913 114758676 5778.0 - 0 ENSG00000009307.15 protein_coding CSDE1 1 OTTHUMG00000012060.5 +8779 chr1 HAVANA gene 114769479 114780685 5894.0 - 0 ENSG00000052723.11 protein_coding SIKE1 2 OTTHUMG00000012061.3 +8780 chr1 HAVANA gene 114837227 114851453 1377.0 + 0 ENSG00000227970.1 unitary_pseudogene NR1H5P 2 OTTHUMG00000012058.1 +8781 chr1 HAVANA gene 114854803 114995370 4338.0 + 0 ENSG00000198765.11 protein_coding SYCP1 2 OTTHUMG00000012057.2 +8782 chr1 HAVANA gene 115029824 115034309 537.0 + 0 ENSG00000134200.3 protein_coding TSHB 2 OTTHUMG00000011881.2 +8783 chr1 HAVANA gene 115048011 115089500 3410.0 - 0 ENSG00000134198.9 protein_coding TSPAN2 2 OTTHUMG00000011878.3 +8784 chr1 HAVANA gene 115099672 115102658 491.0 + 0 ENSG00000233730.1 lincRNA LINC01765 2 OTTHUMG00000011879.1 +8785 chr1 HAVANA gene 115270767 115283763 1354.0 - 0 ENSG00000285698.1 lincRNA AL049825.1 2 OTTHUMG00000193219.1 +8786 chr1 HAVANA gene 115285918 115338236 1047.0 - 0 ENSG00000134259.3 protein_coding NGF 2 OTTHUMG00000011880.1 +8787 chr1 HAVANA gene 115283034 115368072 2610.0 + 0 ENSG00000228035.1 antisense NGF-AS1 2 OTTHUMG00000011974.1 +8788 chr1 HAVANA gene 115471941 115476027 794.0 + 0 ENSG00000226973.1 unprocessed_pseudogene AL512638.1 2 OTTHUMG00000011975.1 +8789 chr1 HAVANA gene 115479428 115481572 298.0 + 0 ENSG00000274468.1 unprocessed_pseudogene AL512638.2 2 OTTHUMG00000187531.1 +8790 chr1 HAVANA gene 115556826 115557475 345.0 + 0 ENSG00000229101.1 unprocessed_pseudogene ELOCP20 1 OTTHUMG00000011972.1 pseudo_consens +8791 chr1 HAVANA gene 115564601 115565432 832.0 + 0 ENSG00000232185.1 processed_pseudogene CNOT7P2 1 OTTHUMG00000011973.1 pseudo_consens +8792 chr1 HAVANA gene 115577229 115577786 558.0 - 0 ENSG00000270631.1 processed_pseudogene AL592436.1 1 OTTHUMG00000184333.1 pseudo_consens +8793 chr1 ENSEMBL gene 115606471 115606768 298.0 + 0 ENSG00000239984.3 misc_RNA RN7SL420P 3 +8794 chr1 ENSEMBL gene 115621872 115622005 134.0 - 0 ENSG00000207502.1 snoRNA RF00406 3 +8795 chr1 HAVANA gene 115641953 115698224 9062.0 + 0 ENSG00000173218.14 protein_coding VANGL1 2 OTTHUMG00000011971.2 +8796 chr1 HAVANA gene 115700007 115768781 2769.0 - 0 ENSG00000118729.11 protein_coding CASQ2 2 OTTHUMG00000011970.1 +8797 chr1 HAVANA gene 115836377 115843917 7541.0 - 0 ENSG00000177551.5 protein_coding NHLH2 2 OTTHUMG00000011969.3 +8798 chr1 HAVANA gene 115856910 115857819 910.0 - 0 ENSG00000214204.4 processed_pseudogene HNRNPA1P43 1 OTTHUMG00000011968.3 pseudo_consens +8799 chr1 HAVANA gene 115916497 115916699 203.0 + 0 ENSG00000271143.1 processed_pseudogene AL357137.1 1 OTTHUMG00000184339.1 pseudo_consens +8800 chr1 HAVANA gene 115919350 115931561 1864.0 + 0 ENSG00000228127.2 lincRNA LINC01649 2 OTTHUMG00000012009.2 +8801 chr1 HAVANA gene 116013813 116017705 705.0 - 0 ENSG00000237993.1 antisense AL365318.1 2 OTTHUMG00000012108.1 +8802 chr1 HAVANA gene 115976498 116070054 5292.0 + 0 ENSG00000163393.12 protein_coding SLC22A15 2 OTTHUMG00000012008.3 +8803 chr1 HAVANA gene 116111755 116135240 3256.0 + 0 ENSG00000173212.4 protein_coding MAB21L3 2 OTTHUMG00000012110.3 +8804 chr1 HAVANA gene 116164284 116166241 914.0 + 0 ENSG00000235933.1 lincRNA LINC01779 2 OTTHUMG00000012112.1 +8805 chr1 ENSEMBL gene 116278606 116278821 216.0 + 0 ENSG00000221040.2 snoRNA RF00012 3 +8806 chr1 HAVANA gene 116372668 116410261 7261.0 + 0 ENSG00000163399.15 protein_coding ATP1A1 2 OTTHUMG00000012109.9 +8807 chr1 ENSEMBL gene 116413766 116413869 104.0 - 0 ENSG00000212385.1 snRNA RNU6-817P 3 +8808 chr1 HAVANA gene 116392247 116418622 2458.0 - 0 ENSG00000203865.9 processed_transcript ATP1A1-AS1 2 OTTHUMG00000012111.4 ncRNA_host +8809 chr1 HAVANA gene 116429049 116433368 515.0 - 0 ENSG00000230381.2 lincRNA AL136376.1 2 OTTHUMG00000014036.4 overlapping_locus +8810 chr1 ENSEMBL gene 116452536 116452627 92.0 + 0 ENSG00000200547.1 misc_RNA RF00019 3 +8811 chr1 HAVANA gene 116423724 116478842 1701.0 - 0 ENSG00000233154.5 lincRNA LINC01762 2 OTTHUMG00000014035.5 overlapping_locus +8812 chr1 HAVANA gene 116493016 116499212 2302.0 - 0 ENSG00000224950.2 lincRNA AL390066.1 2 OTTHUMG00000019417.3 +8813 chr1 HAVANA gene 116532936 116534092 1157.0 - 0 ENSG00000177173.5 processed_pseudogene NAP1L4P1 1 OTTHUMG00000022753.1 pseudo_consens,overlapping_locus +8814 chr1 ENSEMBL gene 116560024 116560111 88.0 - 0 ENSG00000264419.1 miRNA MIR548AC 3 +8815 chr1 HAVANA gene 116514535 116571039 1783.0 - 0 ENSG00000116815.15 protein_coding CD58 2 OTTHUMG00000022749.4 ncRNA_host,overlapping_locus +8816 chr1 HAVANA gene 116574399 116667755 7400.0 - 0 ENSG00000143061.17 protein_coding IGSF3 2 OTTHUMG00000022751.4 +8817 chr1 ENSEMBL gene 116671749 116671827 79.0 + 0 ENSG00000211543.2 miRNA MIR320B1 3 +8818 chr1 HAVANA gene 116694112 116706603 386.0 + 0 ENSG00000203864.3 lincRNA C1orf137 2 OTTHUMG00000022754.1 +8819 chr1 HAVANA gene 116713833 116714835 1003.0 - 0 ENSG00000231072.1 processed_pseudogene GAPDHP64 1 OTTHUMG00000022755.1 pseudo_consens +8820 chr1 HAVANA gene 116739981 116742609 2629.0 - 0 ENSG00000223489.1 processed_pseudogene NEFHP1 1 OTTHUMG00000022752.1 pseudo_consens +8821 chr1 HAVANA gene 116754385 116769228 1679.0 + 0 ENSG00000116824.4 protein_coding CD2 2 OTTHUMG00000022750.2 +8822 chr1 HAVANA gene 116775104 116775623 520.0 - 0 ENSG00000225079.2 processed_pseudogene FTH1P22 1 OTTHUMG00000022797.2 pseudo_consens +8823 chr1 HAVANA gene 116909149 116909531 383.0 - 0 ENSG00000272715.1 lincRNA AL157904.1 2 OTTHUMG00000186394.1 +8824 chr1 ENSEMBL gene 116962347 116962471 125.0 - 0 ENSG00000252510.1 rRNA_pseudogene RNA5SP55 3 +8825 chr1 HAVANA gene 116910057 116990358 6352.0 + 0 ENSG00000134247.9 protein_coding PTGFRN 2 OTTHUMG00000012028.1 +8826 chr1 HAVANA gene 117001750 117036476 3828.0 + 0 ENSG00000134256.12 protein_coding CD101 2 OTTHUMG00000012029.1 +8827 chr1 HAVANA gene 117025482 117059490 1946.0 - 0 ENSG00000236137.1 antisense AL445231.1 2 OTTHUMG00000012031.1 +8828 chr1 ENSEMBL gene 117094643 117094728 86.0 + 0 ENSG00000215930.1 miRNA MIR942 3 +8829 chr1 HAVANA gene 117060303 117107453 10181.0 + 0 ENSG00000116830.11 protein_coding TTF2 2 OTTHUMG00000012030.5 ncRNA_host +8830 chr1 HAVANA gene 117111060 117122587 4368.0 - 0 ENSG00000134253.9 protein_coding TRIM45 2 OTTHUMG00000012119.4 +8831 chr1 HAVANA gene 117138229 117138609 381.0 + 0 ENSG00000228453.1 processed_pseudogene RPS15AP9 1 OTTHUMG00000012117.1 pseudo_consens +8832 chr1 HAVANA gene 117143587 117210960 3027.0 - 0 ENSG00000134258.16 protein_coding VTCN1 2 OTTHUMG00000012118.3 +8833 chr1 ENSEMBL gene 117243212 117243508 297.0 - 0 ENSG00000277141.1 misc_RNA RF00017 3 +8834 chr1 HAVANA gene 117295520 117321336 511.0 + 0 ENSG00000235202.1 lincRNA LINC01525 2 OTTHUMG00000012147.1 +8835 chr1 HAVANA gene 117364899 117365473 575.0 - 0 ENSG00000271427.1 lincRNA AL358072.1 2 OTTHUMG00000185248.1 +8836 chr1 HAVANA gene 117493515 117495006 1492.0 + 0 ENSG00000279513.1 TEC AL157902.2 2 OTTHUMG00000183891.1 overlapping_locus +8837 chr1 HAVANA gene 117367449 117528872 9667.0 + 0 ENSG00000198162.12 protein_coding MAN1A2 1 OTTHUMG00000012149.2 overlapping_locus +8838 chr1 HAVANA gene 117549415 117549922 508.0 + 0 ENSG00000226755.2 processed_pseudogene VPS25P1 1 OTTHUMG00000012148.2 pseudo_consens +8839 chr1 HAVANA gene 117596832 117605770 1091.0 - 0 ENSG00000236866.5 antisense AL157902.1 2 OTTHUMG00000013706.1 +8840 chr1 HAVANA gene 117605934 117628372 5751.0 + 0 ENSG00000183508.4 protein_coding TENT5C 2 OTTHUMG00000013703.2 +8841 chr1 HAVANA gene 117640812 117641639 828.0 - 0 ENSG00000213262.3 processed_pseudogene VDAC2P3 1 OTTHUMG00000013704.2 pseudo_consens +8842 chr1 ENSEMBL gene 117688621 117688742 122.0 - 0 ENSG00000212266.1 snoRNA RF00561 3 +8843 chr1 HAVANA gene 117700029 117700242 214.0 - 0 ENSG00000270719.1 processed_pseudogene AL390877.1 1 OTTHUMG00000184342.1 pseudo_consens +8844 chr1 HAVANA gene 117778087 117778506 420.0 - 0 ENSG00000228217.1 processed_pseudogene PNRC2P1 2 OTTHUMG00000013705.1 +8845 chr1 HAVANA gene 117863485 117929630 10496.0 - 0 ENSG00000196505.10 protein_coding GDAP2 2 OTTHUMG00000012199.2 +8846 chr1 HAVANA gene 117929720 117966542 10275.0 + 0 ENSG00000065183.15 protein_coding WDR3 2 OTTHUMG00000012197.2 +8847 chr1 HAVANA gene 117953861 118185223 9552.0 - 0 ENSG00000155761.13 protein_coding SPAG17 2 OTTHUMG00000012198.4 +8848 chr1 ENSEMBL gene 118264372 118264489 118.0 - 0 ENSG00000222209.1 rRNA_pseudogene RNA5SP56 3 +8849 chr1 HAVANA gene 118614333 118615646 1314.0 - 0 ENSG00000226126.2 processed_pseudogene PSMC1P12 1 OTTHUMG00000012013.2 pseudo_consens +8850 chr1 HAVANA gene 118712999 118713678 680.0 + 0 ENSG00000229911.2 processed_pseudogene AL139148.1 1 OTTHUMG00000012012.2 pseudo_consens +8851 chr1 HAVANA gene 118883046 118989556 3806.0 - 0 ENSG00000092607.14 protein_coding TBX15 2 OTTHUMG00000012263.3 +8852 chr1 HAVANA gene 119000344 119001392 653.0 - 0 ENSG00000226172.2 lincRNA AL139420.1 2 OTTHUMG00000012337.1 overlapping_locus +8853 chr1 HAVANA gene 119000618 119001405 410.0 - 0 ENSG00000239216.1 lincRNA AL139420.2 2 OTTHUMG00000012338.1 overlapping_locus +8854 chr1 HAVANA gene 119047405 119064785 2060.0 + 0 ENSG00000224238.2 antisense WARS2-IT1 2 OTTHUMG00000012341.2 +8855 chr1 HAVANA gene 119084998 119085954 957.0 - 0 ENSG00000223575.2 processed_pseudogene RBMX2P3 1 OTTHUMG00000012340.2 pseudo_consens,overlapping_locus +8856 chr1 HAVANA gene 119126539 119127291 753.0 - 0 ENSG00000236804.1 processed_pseudogene RPS3AP12 1 OTTHUMG00000012339.1 pseudo_consens,overlapping_locus +8857 chr1 HAVANA gene 119031216 119140671 3847.0 - 0 ENSG00000116874.11 protein_coding WARS2 2 OTTHUMG00000012335.3 overlapping_locus +8858 chr1 HAVANA gene 119219314 119220096 783.0 - 0 ENSG00000227056.2 processed_pseudogene RPL6P2 1 OTTHUMG00000012344.3 pseudo_consens +8859 chr1 HAVANA gene 119140396 119275973 5462.0 + 0 ENSG00000231365.5 antisense AL359915.2 2 OTTHUMG00000012342.1 +8860 chr1 HAVANA gene 119260265 119327303 898.0 - 0 ENSG00000227712.1 lincRNA AL359915.1 2 OTTHUMG00000012411.1 +8861 chr1 ENSEMBL gene 119331397 119331525 129.0 - 0 ENSG00000194297.2 snRNA RNU1-75P 3 +8862 chr1 HAVANA gene 119328176 119356182 751.0 + 0 ENSG00000232650.5 lincRNA LINC01780 2 OTTHUMG00000012409.1 +8863 chr1 HAVANA gene 119368946 119370331 311.0 + 0 ENSG00000230921.1 sense_intronic HAO2-IT1 2 OTTHUMG00000012520.1 overlapping_locus +8864 chr1 HAVANA gene 119368779 119394130 1877.0 + 0 ENSG00000116882.14 protein_coding HAO2 2 OTTHUMG00000012410.3 overlapping_locus +8865 chr1 HAVANA gene 119414931 119423035 2336.0 + 0 ENSG00000203859.9 protein_coding HSD3B2 2 OTTHUMG00000012526.2 +8866 chr1 HAVANA gene 119434166 119435080 915.0 - 0 ENSG00000232780.2 transcribed_processed_pseudogene GAPDHP74 1 OTTHUMG00000012523.2 pseudo_consens +8867 chr1 HAVANA gene 119439001 119446086 1118.0 + 0 ENSG00000203858.3 unprocessed_pseudogene HSD3BP2 2 OTTHUMG00000012521.1 +8868 chr1 HAVANA gene 119462029 119463021 993.0 - 0 ENSG00000235595.1 processed_pseudogene GAPDHP23 1 OTTHUMG00000012524.1 pseudo_consens +8869 chr1 HAVANA gene 119467221 119473803 1111.0 + 0 ENSG00000187481.2 unprocessed_pseudogene HSD3BP1 2 OTTHUMG00000012522.1 +8870 chr1 HAVANA gene 119495836 119496841 1006.0 - 0 ENSG00000229570.2 processed_pseudogene GAPDHP58 1 OTTHUMG00000012527.2 pseudo_consens +8871 chr1 HAVANA gene 119507198 119515054 2443.0 + 0 ENSG00000203857.9 protein_coding HSD3B1 2 OTTHUMG00000012525.4 +8872 chr1 HAVANA gene 119533749 119534746 998.0 - 0 ENSG00000226443.3 processed_pseudogene GAPDHP32 1 OTTHUMG00000012954.1 pseudo_consens +8873 chr1 HAVANA gene 119538509 119545913 994.0 + 0 ENSG00000249798.1 unprocessed_pseudogene HSD3BP3 2 OTTHUMG00000012955.1 +8874 chr1 HAVANA gene 119558755 119559774 1020.0 - 0 ENSG00000239873.2 processed_pseudogene GAPDHP27 1 OTTHUMG00000012956.2 pseudo_consens +8875 chr1 HAVANA gene 119564066 119572067 1120.0 + 0 ENSG00000203855.7 unprocessed_pseudogene HSD3BP4 1 OTTHUMG00000012957.1 pseudo_consens +8876 chr1 HAVANA gene 119596167 119597179 1013.0 - 0 ENSG00000240244.3 processed_pseudogene GAPDHP33 1 OTTHUMG00000012958.1 pseudo_consens +8877 chr1 HAVANA gene 119597702 119599271 1570.0 - 0 ENSG00000260941.1 sense_overlapping LINC00622 2 OTTHUMG00000176048.1 +8878 chr1 HAVANA gene 119601340 119609250 1132.0 + 0 ENSG00000198857.3 transcribed_unprocessed_pseudogene HSD3BP5 2 OTTHUMG00000012961.1 +8879 chr1 HAVANA gene 119619422 119647773 5041.0 - 0 ENSG00000143067.4 protein_coding ZNF697 2 OTTHUMG00000012962.3 +8880 chr1 HAVANA gene 119648411 119744226 9217.0 + 0 ENSG00000092621.12 protein_coding PHGDH 2 OTTHUMG00000012100.6 +8881 chr1 HAVANA gene 119747996 119768905 2571.0 - 0 ENSG00000134240.11 protein_coding HMGCS2 2 OTTHUMG00000012101.3 +8882 chr1 HAVANA gene 119794018 119811660 3493.0 - 0 ENSG00000134193.14 protein_coding REG4 1 OTTHUMG00000012175.2 +8883 chr1 HAVANA gene 119834870 119844514 1326.0 - 0 ENSG00000215864.5 unprocessed_pseudogene NBPF7 2 OTTHUMG00000012178.3 +8884 chr1 HAVANA gene 119853316 119853748 433.0 + 0 ENSG00000227205.4 processed_pseudogene PFN1P9 1 OTTHUMG00000012179.2 pseudo_consens +8885 chr1 HAVANA gene 119886304 119886927 624.0 + 0 ENSG00000226446.1 processed_pseudogene NOTCH2P1 2 OTTHUMG00000057603.1 +8886 chr1 HAVANA gene 119893533 119896495 2963.0 - 0 ENSG00000134249.6 protein_coding ADAM30 2 OTTHUMG00000189303.1 retrogene +8887 chr1 HAVANA gene 119909255 119910613 1359.0 - 0 ENSG00000261662.1 sense_overlapping AL359752.1 2 OTTHUMG00000176049.1 +8888 chr1 HAVANA gene 119911553 120069626 16807.0 - 0 ENSG00000134250.19 protein_coding NOTCH2 2 OTTHUMG00000012177.5 +8889 chr1 HAVANA gene 120076616 120077091 476.0 + 0 ENSG00000273406.1 lincRNA AC245008.1 2 OTTHUMG00000186400.1 +8890 chr1 ENSEMBL gene 120126974 120127074 101.0 + 0 ENSG00000207149.1 snRNA RNU6-465P 3 +8891 chr1 HAVANA gene 120150898 120176515 9034.0 - 0 ENSG00000265808.3 protein_coding SEC22B 2 OTTHUMG00000185008.3 overlapping_locus +8892 chr1 ENSEMBL gene 120228046 120228295 250.0 - 0 ENSG00000277313.1 misc_RNA RF00100 3 +8893 chr1 HAVANA gene 120197085 120319680 853.0 + 0 ENSG00000274642.1 unprocessed_pseudogene AC244669.2 2 OTTHUMG00000185010.1 +8894 chr1 HAVANA gene 120267334 120341871 1107.0 - 0 ENSG00000223804.5 transcribed_unprocessed_pseudogene AC244669.1 2 OTTHUMG00000185011.1 +8895 chr1 ENSEMBL gene 120354987 120355148 162.0 + 0 ENSG00000273727.1 snRNA RF00003 3 +8896 chr1 HAVANA gene 120432204 120434052 1849.0 - 0 ENSG00000270392.2 transcribed_processed_pseudogene PFN1P2 1 OTTHUMG00000185012.1 pseudo_consens +8897 chr1 HAVANA gene 120436353 120467739 5330.0 + 0 ENSG00000270231.3 unprocessed_pseudogene NBPF8 2 OTTHUMG00000185013.2 +8898 chr1 ENSEMBL gene 120571120 120571264 145.0 + 0 ENSG00000273694.1 snRNA RF00004 3 +8899 chr1 ENSEMBL gene 120670127 120670376 250.0 + 0 ENSG00000275933.1 misc_RNA RF00100 3 +8900 chr1 HAVANA gene 120489860 120701289 9026.0 - 0 ENSG00000275131.3 transcribed_unprocessed_pseudogene AC241952.1 1 OTTHUMG00000185014.3 pseudo_consens +8901 chr1 HAVANA gene 120723923 120841481 6032.0 + 0 ENSG00000273136.6 protein_coding NBPF26 2 OTTHUMG00000189374.2 +8902 chr1 ENSEMBL gene 120850819 120850985 167.0 - 0 ENSG00000275538.1 snRNA RNVU1-19 3 +8903 chr1 HAVANA gene 120889746 120890405 660.0 + 0 ENSG00000263353.3 protein_coding PPIAL4A 2 OTTHUMG00000185015.2 retrogene +8904 chr1 HAVANA gene 120913151 120914238 1088.0 - 0 ENSG00000281741.2 TEC AC241377.3 2 OTTHUMG00000192118.1 +8905 chr1 ENSEMBL gene 120942600 120942763 164.0 + 0 ENSG00000277610.1 snRNA RNVU1-4 3 +8906 chr1 HAVANA gene 120963645 120977585 1420.0 + 0 ENSG00000285215.2 transcribed_unprocessed_pseudogene AC241377.4 2 OTTHUMG00000192547.2 +8907 chr1 ENSEMBL gene 121008362 121008507 146.0 - 0 ENSG00000273516.1 snRNA RF00003 3 +8908 chr1 HAVANA gene 120913275 121009291 2075.0 + 0 ENSG00000226067.6 lincRNA LINC00623 2 OTTHUMG00000185016.1 ncRNA_host +8909 chr1 HAVANA gene 120985692 121052167 1314.0 - 0 ENSG00000275585.2 transcribed_unprocessed_pseudogene AC241377.2 2 OTTHUMG00000185017.2 +8910 chr1 HAVANA gene 121058948 121059353 406.0 - 0 ENSG00000275296.1 processed_pseudogene AC241377.1 1 OTTHUMG00000185018.1 pseudo_consens +8911 chr1 HAVANA gene 121087345 121096310 3383.0 + 0 ENSG00000198019.12 protein_coding FCGR1B 2 OTTHUMG00000040903.8 +8912 chr1 HAVANA gene 121090289 121097655 3543.0 - 0 ENSG00000233029.3 antisense AC244453.2 2 OTTHUMG00000041038.2 overlapping_locus +8913 chr1 HAVANA gene 121087528 121116676 459.0 - 0 ENSG00000234998.1 antisense AC244453.3 2 OTTHUMG00000041039.2 overlapping_locus +8914 chr1 HAVANA gene 121108210 121117257 756.0 - 0 ENSG00000223345.3 transcribed_unprocessed_pseudogene HIST2H2BA 2 OTTHUMG00000040899.2 overlapping_locus +8915 chr1 HAVANA gene 121118195 121118610 416.0 - 0 ENSG00000213244.3 unprocessed_pseudogene HIST2H3DP1 1 OTTHUMG00000040898.2 pseudo_consens +8916 chr1 HAVANA gene 121142051 121142438 388.0 - 0 ENSG00000268993.1 processed_pseudogene RPL22P6 1 OTTHUMG00000040901.2 pseudo_consens +8917 chr1 HAVANA gene 121118126 121146826 494.0 + 0 ENSG00000227193.2 lincRNA AC244453.1 2 OTTHUMG00000040900.2 +8918 chr1 HAVANA gene 121167646 121185539 3033.0 - 0 ENSG00000188610.12 protein_coding FAM72B 2 OTTHUMG00000185025.1 +8919 chr1 HAVANA gene 121314947 121315055 109.0 - 0 ENSG00000275129.1 processed_pseudogene AC243994.1 1 OTTHUMG00000185028.1 pseudo_consens +8920 chr1 HAVANA gene 121184810 121392822 7311.0 + 0 ENSG00000171943.11 protein_coding SRGAP2C 2 OTTHUMG00000041445.3 +8921 chr1 HAVANA gene 121360156 121398806 2649.0 - 0 ENSG00000230806.1 antisense SRGAP2-AS1 2 OTTHUMG00000013093.4 +8922 chr1 HAVANA gene 121396754 121463429 4658.0 + 0 ENSG00000227082.2 lincRNA AC244021.1 2 OTTHUMG00000188235.3 +8923 chr1 HAVANA gene 121502344 121503891 1548.0 + 0 ENSG00000233432.2 processed_pseudogene AL592494.2 1 OTTHUMG00000013090.2 pseudo_consens +8924 chr1 HAVANA gene 121494379 121510383 309.0 - 0 ENSG00000228826.2 lincRNA AL592494.1 2 OTTHUMG00000013091.3 +8925 chr1 HAVANA gene 121518366 121518829 464.0 - 0 ENSG00000272583.1 lincRNA AL592494.3 2 OTTHUMG00000186402.1 +8926 chr1 HAVANA gene 121519112 121575702 5745.0 + 0 ENSG00000231752.6 transcribed_unprocessed_pseudogene EMBP1 2 OTTHUMG00000185035.3 +8927 chr1 HAVANA gene 121573946 121580524 426.0 - 0 ENSG00000224857.1 lincRNA LINC01691 2 OTTHUMG00000013087.1 +8928 chr1 HAVANA gene 143343180 143343275 96.0 + 0 ENSG00000276118.1 unprocessed_pseudogene AC242852.1 2 OTTHUMG00000188679.1 +8929 chr1 HAVANA gene 143354191 143386122 1807.0 + 0 ENSG00000277095.1 unprocessed_pseudogene AC242852.2 2 OTTHUMG00000188680.1 +8930 chr1 HAVANA gene 143419625 143420207 213.0 - 0 ENSG00000277702.1 unprocessed_pseudogene AC239859.6 2 OTTHUMG00000188681.1 +8931 chr1 ENSEMBL gene 143439605 143439714 110.0 + 0 ENSG00000252830.2 rRNA RNA5SP533 3 +8932 chr1 HAVANA gene 143449571 143450245 675.0 - 0 ENSG00000264145.2 processed_pseudogene AC239859.4 1 OTTHUMG00000188682.1 pseudo_consens +8933 chr1 HAVANA gene 143487772 143488353 582.0 + 0 ENSG00000242943.1 processed_pseudogene NKAIN1P1 1 OTTHUMG00000040703.2 pseudo_consens +8934 chr1 HAVANA gene 143461221 143498767 1232.0 - 0 ENSG00000274927.1 unprocessed_pseudogene AC239859.5 2 OTTHUMG00000188683.1 +8935 chr1 HAVANA gene 143498785 143499102 318.0 + 0 ENSG00000223495.2 processed_pseudogene AC239859.2 2 OTTHUMG00000040702.1 +8936 chr1 HAVANA gene 143499187 143500512 408.0 - 0 ENSG00000235887.2 lincRNA AC239859.3 2 OTTHUMG00000040701.2 +8937 chr1 HAVANA gene 143541768 143572834 2594.0 + 0 ENSG00000203825.4 unprocessed_pseudogene AC239859.1 2 OTTHUMG00000041565.2 +8938 chr1 HAVANA gene 143619994 143620527 534.0 + 0 ENSG00000226028.2 processed_pseudogene PFN1P12 1 OTTHUMG00000041569.1 pseudo_consens +8939 chr1 HAVANA gene 143595216 143635641 2119.0 - 0 ENSG00000179571.10 unprocessed_pseudogene NBPF17P 2 OTTHUMG00000041567.3 +8940 chr1 ENSEMBL gene 143652050 143652215 166.0 - 0 ENSG00000202167.1 snRNA RNU1-114P 3 +8941 chr1 ENSEMBL gene 143699456 143699619 164.0 - 0 ENSG00000207349.1 snRNA RNVU1-17 3 +8942 chr1 ENSEMBL gene 143720510 143720644 135.0 - 0 ENSG00000252826.1 snRNA RNU1-92P 3 +8943 chr1 ENSEMBL gene 143729407 143729570 164.0 - 0 ENSG00000206737.1 snRNA RNVU1-18 3 +8944 chr1 HAVANA gene 143736066 143739506 2675.0 + 0 ENSG00000232721.2 lincRNA AC239800.2 2 OTTHUMG00000041573.2 +8945 chr1 HAVANA gene 143745249 143760669 869.0 + 0 ENSG00000223779.6 unprocessed_pseudogene AC239800.1 1 OTTHUMG00000041572.6 +8946 chr1 HAVANA gene 143766540 143769083 2544.0 + 0 ENSG00000242352.2 transcribed_processed_pseudogene FAM91A3P 1 OTTHUMG00000041566.3 pseudo_consens,overlapping_locus +8947 chr1 HAVANA gene 143784376 143784671 296.0 + 0 ENSG00000270962.1 processed_pseudogene AC239800.3 1 OTTHUMG00000184374.1 pseudo_consens +8948 chr1 ENSEMBL gene 143791542 143791687 146.0 - 0 ENSG00000252105.1 snRNA RNU1-143P 3 +8949 chr1 HAVANA gene 143790010 143797108 5243.0 + 0 ENSG00000263590.2 lincRNA LINC02591 2 OTTHUMG00000041568.3 +8950 chr1 HAVANA gene 143811359 143825837 1176.0 - 0 ENSG00000233430.3 unprocessed_pseudogene AC239798.1 2 OTTHUMG00000041633.4 +8951 chr1 HAVANA gene 143846097 143846504 408.0 - 0 ENSG00000237503.2 processed_pseudogene AC239798.3 1 OTTHUMG00000041031.2 pseudo_consens +8952 chr1 HAVANA gene 143874793 143883575 1127.0 + 0 ENSG00000265531.3 unprocessed_pseudogene FCGR1CP 2 OTTHUMG00000156231.5 +8953 chr1 HAVANA gene 143877731 143885076 3540.0 - 0 ENSG00000234571.1 lincRNA AC239798.2 2 OTTHUMG00000041032.2 overlapping_locus +8954 chr1 HAVANA gene 143875171 143904650 567.0 - 0 ENSG00000240929.2 transcribed_unprocessed_pseudogene HIST2H2BB 2 OTTHUMG00000012093.4 overlapping_locus +8955 chr1 HAVANA gene 143894544 143905964 2072.0 - 0 ENSG00000273213.2 processed_transcript AC239798.4 2 OTTHUMG00000186366.2 overlapping_locus +8956 chr1 HAVANA gene 143905556 143905966 411.0 - 0 ENSG00000203818.7 protein_coding HIST2H3PS2 2 OTTHUMG00000041033.5 overlapping_locus +8957 chr1 HAVANA gene 143929994 143930382 389.0 - 0 ENSG00000268074.1 processed_pseudogene RPL22P5 1 OTTHUMG00000041028.2 pseudo_consens +8958 chr1 HAVANA gene 143905487 143934776 494.0 + 0 ENSG00000230186.3 antisense AC246680.1 2 OTTHUMG00000041027.2 +8959 chr1 HAVANA gene 143955364 143971965 2297.0 - 0 ENSG00000263513.5 protein_coding FAM72C 2 OTTHUMG00000041029.3 +8960 chr1 HAVANA gene 143975087 144068350 1021.0 + 0 ENSG00000270872.2 unprocessed_pseudogene SRGAP2D 2 OTTHUMG00000188642.1 +8961 chr1 HAVANA gene 144085628 144086098 347.0 + 0 ENSG00000276674.1 IG_V_pseudogene IGKV1OR1-1 1 OTTHUMG00000184566.2 pseudo_consens +8962 chr1 HAVANA gene 144168752 144168850 99.0 + 0 ENSG00000275075.1 processed_pseudogene AC244015.1 2 OTTHUMG00000188643.1 +8963 chr1 HAVANA gene 144179777 144211729 1861.0 + 0 ENSG00000275767.1 unprocessed_pseudogene AC244015.2 2 OTTHUMG00000188644.1 +8964 chr1 HAVANA gene 144227030 144250288 839.0 - 0 ENSG00000232527.7 lincRNA AC245595.1 2 OTTHUMG00000017423.4 +8965 chr1 ENSEMBL gene 144265217 144265326 110.0 + 0 ENSG00000276442.1 rRNA RNA5SP529 3 +8966 chr1 HAVANA gene 144274892 144277993 2012.0 - 0 ENSG00000175658.4 processed_pseudogene DRD5P2 1 OTTHUMG00000013836.3 pseudo_consens +8967 chr1 HAVANA gene 144276484 144305180 1476.0 - 0 ENSG00000276756.4 transcribed_unprocessed_pseudogene AC245595.2 2 OTTHUMG00000188646.1 +8968 chr1 HAVANA gene 144372875 144373659 785.0 - 0 ENSG00000271567.1 protein_coding PPIAL4E 2 OTTHUMG00000189244.1 retrogene +8969 chr1 HAVANA gene 144401069 144401355 287.0 - 0 ENSG00000271439.1 processed_pseudogene AC246785.4 1 OTTHUMG00000184372.1 pseudo_consens +8970 chr1 ENSEMBL gene 144412576 144412740 165.0 + 0 ENSG00000207205.1 snRNA RNVU1-15 3 +8971 chr1 HAVANA gene 144418678 144419190 513.0 + 0 ENSG00000233586.1 processed_pseudogene AC246785.2 2 OTTHUMG00000040698.2 +8972 chr1 HAVANA gene 144418113 144419192 314.0 - 0 ENSG00000237343.1 lincRNA AC246785.3 2 OTTHUMG00000040699.1 +8973 chr1 HAVANA gene 144442606 144443004 399.0 + 0 ENSG00000227212.3 processed_pseudogene PFN1P6 2 OTTHUMG00000013834.1 +8974 chr1 HAVANA gene 144421386 144461674 5306.0 - 0 ENSG00000266338.6 protein_coding NBPF15 2 OTTHUMG00000013634.13 +8975 chr1 HAVANA gene 144472535 144474790 264.0 - 0 ENSG00000229002.1 unprocessed_pseudogene AC246785.1 2 OTTHUMG00000017425.1 +8976 chr1 ENSEMBL gene 144523860 144524021 162.0 - 0 ENSG00000275291.1 snRNA RF00003 3 +8977 chr1 ENSEMBL gene 144551779 144551943 165.0 - 0 ENSG00000278099.1 snRNA RF00003 3 +8978 chr1 ENSEMBL gene 144560666 144560829 164.0 - 0 ENSG00000277918.1 snRNA RF00003 3 +8979 chr1 HAVANA gene 144592868 144593527 660.0 + 0 ENSG00000279782.1 protein_coding PPIAL4F 2 OTTHUMG00000189245.1 retrogene +8980 chr1 HAVANA gene 144627192 144642372 939.0 - 0 ENSG00000277199.1 lincRNA LINC01632 2 OTTHUMG00000189067.1 +8981 chr1 HAVANA gene 144661200 144679513 1178.0 + 0 ENSG00000278273.1 unprocessed_pseudogene FP700107.1 2 OTTHUMG00000017498.4 +8982 chr1 ENSEMBL gene 144701050 144701159 110.0 - 0 ENSG00000222854.1 rRNA_pseudogene RNA5SP59 3 +8983 chr1 HAVANA gene 144754572 144786606 1892.0 - 0 ENSG00000273825.1 unprocessed_pseudogene FP700111.2 2 OTTHUMG00000188647.1 +8984 chr1 HAVANA gene 144641371 144919902 2502.0 + 0 ENSG00000224363.2 lincRNA FP700111.1 2 OTTHUMG00000041441.2 +8985 chr1 HAVANA gene 144965025 144965135 111.0 + 0 ENSG00000271644.1 processed_pseudogene AC242498.1 1 OTTHUMG00000184354.1 pseudo_consens +8986 chr1 HAVANA gene 144887265 145095528 7230.0 - 0 ENSG00000196369.11 protein_coding SRGAP2B 2 OTTHUMG00000041442.8 +8987 chr1 HAVANA gene 145096000 145112696 2397.0 + 0 ENSG00000215784.5 protein_coding FAM72D 2 OTTHUMG00000074801.4 +8988 chr1 HAVANA gene 145139986 145148375 686.0 + 0 ENSG00000283752.1 unprocessed_pseudogene AC241585.3 2 OTTHUMG00000191965.1 +8989 chr1 ENSEMBL gene 145169519 145169664 146.0 + 0 ENSG00000277678.1 snRNA RF00003 3 +8990 chr1 HAVANA gene 145214851 145215938 1088.0 + 0 ENSG00000281571.2 TEC AC241585.2 2 OTTHUMG00000192119.1 +8991 chr1 HAVANA gene 145164099 145216058 6056.0 - 0 ENSG00000272419.6 transcribed_unprocessed_pseudogene LINC01145 2 OTTHUMG00000041632.5 +8992 chr1 HAVANA gene 145233001 145233519 519.0 + 0 ENSG00000223612.3 processed_pseudogene AC241585.1 2 OTTHUMG00000078264.1 +8993 chr1 HAVANA gene 145241630 145242124 495.0 - 0 ENSG00000256374.2 protein_coding PPIAL4D 2 OTTHUMG00000078265.3 retrogene +8994 chr1 HAVANA gene 145269604 145269890 287.0 - 0 ENSG00000271291.1 processed_pseudogene AC245014.2 1 OTTHUMG00000184370.1 pseudo_consens +8995 chr1 ENSEMBL gene 145281116 145281279 164.0 + 0 ENSG00000207501.1 snRNA RNVU1-14 3 +8996 chr1 HAVANA gene 145281116 145281462 347.0 + 0 ENSG00000276216.1 lincRNA AC245014.3 2 OTTHUMG00000188659.1 ncRNA_host +8997 chr1 HAVANA gene 145286610 145287755 381.0 - 0 ENSG00000236140.1 lincRNA AC245014.1 2 OTTHUMG00000042457.1 +8998 chr1 HAVANA gene 145289900 145405778 18995.0 - 0 ENSG00000162825.16 protein_coding NBPF20 2 OTTHUMG00000042439.6 +8999 chr1 HAVANA gene 145407772 145408173 402.0 + 0 ENSG00000234367.1 processed_pseudogene PFN1P3 1 OTTHUMG00000043046.1 pseudo_consens +9000 chr1 ENSEMBL gene 145431527 145431693 167.0 - 0 ENSG00000270384.1 snRNA RF00003 3 +9001 chr1 ENSEMBL gene 145465617 145465780 164.0 - 0 ENSG00000270722.1 snRNA RF00003 3 +9002 chr1 HAVANA gene 145507444 145508607 270.0 + 0 ENSG00000278182.1 unprocessed_pseudogene AC239860.2 2 OTTHUMG00000188660.1 +9003 chr1 HAVANA gene 145509047 145520594 1270.0 + 0 ENSG00000275064.1 unprocessed_pseudogene AC239860.1 2 OTTHUMG00000188661.1 +9004 chr1 HAVANA gene 145572345 145607858 3827.0 - 0 ENSG00000272150.5 transcribed_unprocessed_pseudogene NBPF25P 2 OTTHUMG00000188662.2 +9005 chr1 HAVANA gene 145607990 145670648 5557.0 + 0 ENSG00000117262.18 protein_coding GPR89A 2 OTTHUMG00000013738.5 +9006 chr1 HAVANA gene 145670852 145708148 2480.0 - 0 ENSG00000174827.13 protein_coding PDZK1 2 OTTHUMG00000013735.7 +9007 chr1 HAVANA gene 145719471 145739288 3971.0 + 0 ENSG00000117281.15 protein_coding CD160 2 OTTHUMG00000013749.5 +9008 chr1 HAVANA gene 145738868 145824077 11041.0 - 0 ENSG00000265491.4 protein_coding RNF115 2 OTTHUMG00000013758.6 +9009 chr1 HAVANA gene 145824088 145842505 2793.0 + 0 ENSG00000186141.8 protein_coding POLR3C 2 OTTHUMG00000013753.3 +9010 chr1 HAVANA gene 145845629 145848953 1657.0 + 0 ENSG00000186364.11 protein_coding NUDT17 2 OTTHUMG00000013752.4 +9011 chr1 ENSEMBL gene 145850587 145850645 59.0 - 0 ENSG00000278549.1 miRNA MIR6736 3 +9012 chr1 HAVANA gene 145848522 145859836 4805.0 - 0 ENSG00000131788.15 protein_coding PIAS3 2 OTTHUMG00000013750.13 ncRNA_host +9013 chr1 HAVANA gene 145866560 145885866 3363.0 - 0 ENSG00000198483.12 protein_coding ANKRD35 2 OTTHUMG00000013743.2 +9014 chr1 HAVANA gene 145892847 145893483 408.0 + 0 ENSG00000244619.2 antisense AC243547.1 1 OTTHUMG00000042455.2 +9015 chr1 HAVANA gene 145891208 145910189 6320.0 - 0 ENSG00000143127.12 protein_coding ITGA10 2 OTTHUMG00000013751.3 +9016 chr1 HAVANA gene 145911350 145918837 1838.0 - 0 ENSG00000131779.10 protein_coding PEX11B 2 OTTHUMG00000013756.2 overlapping_locus +9017 chr1 HAVANA gene 145919013 145925341 2511.0 + 0 ENSG00000211451.12 transcribed_unitary_pseudogene GNRHR2 2 OTTHUMG00000013742.6 +9018 chr1 HAVANA gene 145917714 145927678 5585.0 - 0 ENSG00000265241.6 protein_coding RBM8A 2 OTTHUMG00000013736.7 overlapping_locus +9019 chr1 HAVANA gene 145933423 145958001 3975.0 - 0 ENSG00000271601.3 protein_coding LIX1L 2 OTTHUMG00000013741.3 +9020 chr1 HAVANA gene 145926590 145959179 3248.0 + 0 ENSG00000234222.6 antisense LIX1L-AS1 2 OTTHUMG00000042245.4 overlapping_locus +9021 chr1 HAVANA gene 145961388 145964422 234.0 + 0 ENSG00000278431.1 antisense AC243547.2 2 OTTHUMG00000188590.1 +9022 chr1 HAVANA gene 145959442 145964582 3677.0 - 0 ENSG00000272031.2 protein_coding ANKRD34A 2 OTTHUMG00000013740.5 +9023 chr1 HAVANA gene 145927258 145977811 1095.0 + 0 ENSG00000280778.1 protein_coding AC243547.3 2 OTTHUMG00000189699.2 +9024 chr1 HAVANA gene 145964702 145978848 1799.0 + 0 ENSG00000121851.12 protein_coding POLR3GL 2 OTTHUMG00000013739.3 overlapping_locus +9025 chr1 HAVANA gene 145992435 145996600 3625.0 - 0 ENSG00000265972.5 protein_coding TXNIP 2 OTTHUMG00000013755.6 +9026 chr1 HAVANA gene 146017468 146036746 2418.0 - 0 ENSG00000168509.19 protein_coding HJV 2 OTTHUMG00000013748.6 +9027 chr1 ENSEMBL gene 146052081 146052244 164.0 - 0 ENSG00000201558.1 snRNA RNVU1-6 3 +9028 chr1 HAVANA gene 146052566 146061948 2458.0 + 0 ENSG00000233396.7 lincRNA LINC01719 2 OTTHUMG00000042244.5 +9029 chr1 HAVANA gene 146064699 146144804 13249.0 - 0 ENSG00000271425.7 protein_coding NBPF10 2 OTTHUMG00000013757.23 overlapping_locus +9030 chr1 HAVANA gene 146113652 146229000 3411.0 - 0 ENSG00000213240.8 protein_coding AC239799.1 2 OTTHUMG00000167702.20 overlapping_locus +9031 chr1 HAVANA gene 146146203 146229026 6443.0 - 0 ENSG00000264343.5 protein_coding NOTCH2NLA 2 OTTHUMG00000013754.5 overlapping_locus +9032 chr1 HAVANA gene 146235806 146237807 2002.0 + 0 ENSG00000276509.1 lincRNA AC239799.2 2 OTTHUMG00000188942.1 +9033 chr1 ENSEMBL gene 146288596 146288696 101.0 + 0 ENSG00000201789.1 snRNA RNU6-1071P 3 +9034 chr1 HAVANA gene 146298170 146298715 546.0 + 0 ENSG00000271121.2 processed_pseudogene NUDT4P2 2 OTTHUMG00000188666.1 +9035 chr1 HAVANA gene 146344131 146344790 660.0 - 0 ENSG00000270339.3 protein_coding AC243756.1 2 OTTHUMG00000191983.1 +9036 chr1 ENSEMBL gene 146376807 146376970 164.0 + 0 ENSG00000273768.1 snRNA RF00003 3 +9037 chr1 HAVANA gene 146321214 146401647 1466.0 - 0 ENSG00000277406.2 transcribed_unprocessed_pseudogene SEC22B4P 2 OTTHUMG00000188667.2 +9038 chr1 ENSEMBL gene 146409903 146410062 160.0 + 0 ENSG00000274428.1 snRNA RF00003 3 +9039 chr1 HAVANA gene 146459449 146461859 451.0 + 0 ENSG00000277655.1 unprocessed_pseudogene AC245407.1 2 OTTHUMG00000187535.3 +9040 chr1 ENSEMBL gene 146539541 146539663 123.0 - 0 ENSG00000274408.1 rRNA RNA5SP536 3 +9041 chr1 ENSEMBL gene 146862729 146862845 117.0 - 0 ENSG00000274450.1 snRNA RF00619 3 +9042 chr1 HAVANA gene 146472566 146914294 17641.0 + 0 ENSG00000276975.3 transcribed_unprocessed_pseudogene HYDIN2 2 OTTHUMG00000158075.6 +9043 chr1 HAVANA gene 146957117 146957659 543.0 - 0 ENSG00000244371.2 processed_pseudogene PFN1P8 1 OTTHUMG00000158076.2 pseudo_consens +9044 chr1 HAVANA gene 146938744 146996202 7272.0 + 0 ENSG00000268043.7 protein_coding NBPF12 2 OTTHUMG00000043708.7 +9045 chr1 HAVANA gene 147001931 147003618 884.0 - 0 ENSG00000234225.2 lincRNA AC244394.2 1 OTTHUMG00000043709.3 +9046 chr1 HAVANA gene 147050817 147052481 1665.0 + 0 ENSG00000225603.3 processed_pseudogene AC244394.1 1 OTTHUMG00000041051.2 pseudo_consens +9047 chr1 HAVANA gene 147019656 147056593 1783.0 - 0 ENSG00000227242.4 unprocessed_pseudogene NBPF13P 2 OTTHUMG00000191847.2 +9048 chr1 ENSEMBL gene 147079746 147079870 125.0 + 0 ENSG00000201142.1 snRNA RNU1-151P 3 +9049 chr1 HAVANA gene 147082338 147083578 1241.0 - 0 ENSG00000230832.3 processed_pseudogene AC241584.1 1 OTTHUMG00000041048.2 pseudo_consens,overlapping_locus +9050 chr1 HAVANA gene 147099482 147124285 2090.0 - 0 ENSG00000283342.1 unprocessed_pseudogene AC241584.2 2 OTTHUMG00000041474.4 +9051 chr1 HAVANA gene 147155106 147172550 5460.0 - 0 ENSG00000131791.7 protein_coding PRKAB2 2 OTTHUMG00000014032.3 +9052 chr1 HAVANA gene 147172744 147179622 3328.0 + 0 ENSG00000180867.11 transcribed_processed_pseudogene PDIA3P1 1 OTTHUMG00000041049.2 pseudo_consens,overlapping_locus +9053 chr1 HAVANA gene 147203276 147204932 1657.0 - 0 ENSG00000226015.2 processed_pseudogene CCT8P1 1 OTTHUMG00000041050.3 pseudo_consens,overlapping_locus +9054 chr1 HAVANA gene 147223554 147224348 795.0 + 0 ENSG00000236806.1 processed_pseudogene RPL7AP15 1 OTTHUMG00000041477.2 pseudo_consens,overlapping_locus +9055 chr1 HAVANA gene 147175351 147243050 5986.0 - 0 ENSG00000131781.12 protein_coding FMO5 2 OTTHUMG00000014607.4 overlapping_locus +9056 chr1 HAVANA gene 147173186 147252659 1027.0 + 0 ENSG00000237188.4 antisense AC242426.2 2 OTTHUMG00000185879.2 overlapping_locus +9057 chr1 HAVANA gene 147242641 147295766 3376.0 + 0 ENSG00000131778.18 protein_coding CHD1L 2 OTTHUMG00000150271.3 overlapping_locus +9058 chr1 HAVANA gene 147319110 147320224 960.0 + 0 ENSG00000213226.4 processed_pseudogene AC242426.1 1 OTTHUMG00000037549.2 pseudo_consens +9059 chr1 HAVANA gene 147419053 147419900 848.0 + 0 ENSG00000226653.3 unitary_pseudogene OR13Z1P 2 OTTHUMG00000154280.4 +9060 chr1 ENSEMBL gene 147420199 147420300 102.0 - 0 ENSG00000207209.1 misc_RNA RF00019 3 +9061 chr1 HAVANA gene 147445579 147446133 555.0 + 0 ENSG00000272443.1 unprocessed_pseudogene OR13Z2P 2 OTTHUMG00000185763.2 +9062 chr1 HAVANA gene 147482238 147482628 391.0 + 0 ENSG00000272480.1 unprocessed_pseudogene OR13Z3P 2 OTTHUMG00000185764.2 +9063 chr1 HAVANA gene 147258885 147517875 5564.0 - 0 ENSG00000278811.4 antisense LINC00624 2 OTTHUMG00000041476.3 ncRNA_host +9064 chr1 HAVANA gene 147541412 147626216 6420.0 + 0 ENSG00000116128.10 protein_coding BCL9 2 OTTHUMG00000014031.2 +9065 chr1 HAVANA gene 147629652 147670496 11960.0 - 0 ENSG00000162836.11 protein_coding ACP6 1 OTTHUMG00000014019.7 +9066 chr1 ENSEMBL gene 147689256 147689537 282.0 + 0 ENSG00000277762.1 misc_RNA RN7SL261P 3 +9067 chr1 HAVANA gene 147697794 147699335 446.0 + 0 ENSG00000227139.1 lincRNA AC241644.1 2 OTTHUMG00000042022.1 +9068 chr1 HAVANA gene 147757185 147758434 668.0 + 0 ENSG00000274415.1 antisense AC241644.3 2 OTTHUMG00000042023.3 +9069 chr1 HAVANA gene 147756199 147773362 3292.0 - 0 ENSG00000265107.2 protein_coding GJA5 2 OTTHUMG00000014020.5 +9070 chr1 HAVANA gene 147777590 147788953 480.0 + 0 ENSG00000234190.1 lincRNA AC241644.2 2 OTTHUMG00000042020.1 +9071 chr1 HAVANA gene 147840962 147842359 1398.0 + 0 ENSG00000223728.3 processed_pseudogene AC239801.1 1 OTTHUMG00000037548.2 pseudo_consens +9072 chr1 HAVANA gene 147907956 147909257 1302.0 + 0 ENSG00000121634.5 protein_coding GJA8 2 OTTHUMG00000024085.2 +9073 chr1 HAVANA gene 147928393 147993521 5143.0 + 0 ENSG00000188092.14 protein_coding GPR89B 2 OTTHUMG00000013452.6 +9074 chr1 HAVANA gene 148011799 148012228 430.0 + 0 ENSG00000273059.1 lincRNA AC239803.2 2 OTTHUMG00000186412.1 +9075 chr1 ENSEMBL gene 148014417 148014583 167.0 - 0 ENSG00000206791.1 snRNA RNU1-129P 3 +9076 chr1 HAVANA gene 147993862 148014956 3609.0 - 0 ENSG00000215859.9 transcribed_unprocessed_pseudogene PDZK1P1 2 OTTHUMG00000074107.1 overlapping_locus +9077 chr1 HAVANA gene 148021850 148025931 588.0 + 0 ENSG00000274372.4 lincRNA AC239803.3 2 OTTHUMG00000013747.3 +9078 chr1 ENSEMBL gene 148038753 148038916 164.0 - 0 ENSG00000206585.1 snRNA RNVU1-7 3 +9079 chr1 HAVANA gene 148080598 148093883 1641.0 + 0 ENSG00000229828.2 unprocessed_pseudogene PDE4DIPP1 2 OTTHUMG00000013879.3 +9080 chr1 HAVANA gene 148129497 148129898 402.0 + 0 ENSG00000225080.1 processed_pseudogene PFN1P4 1 OTTHUMG00000043429.1 pseudo_consens +9081 chr1 HAVANA gene 148146395 148149566 933.0 + 0 ENSG00000198658.4 unprocessed_pseudogene ABHD17AP1 1 OTTHUMG00000047949.3 pseudo_consens +9082 chr1 HAVANA gene 148102046 148152322 5947.0 - 0 ENSG00000263956.6 protein_coding NBPF11 2 OTTHUMG00000013880.10 +9083 chr1 HAVANA gene 148162360 148186630 2813.0 + 0 ENSG00000232265.7 lincRNA AC239803.1 2 OTTHUMG00000043431.5 +9084 chr1 ENSEMBL gene 148193716 148193838 123.0 + 0 ENSG00000238765.1 rRNA_pseudogene RNA5SP57 3 +9085 chr1 HAVANA gene 148234273 148234489 217.0 + 0 ENSG00000224335.2 unprocessed_pseudogene AC239809.1 2 OTTHUMG00000040409.2 +9086 chr1 HAVANA gene 148246169 148246685 517.0 + 0 ENSG00000227700.1 processed_pseudogene AC239809.2 2 OTTHUMG00000014091.1 +9087 chr1 HAVANA gene 148159213 148255012 10337.0 - 0 ENSG00000227733.9 lincRNA AC239809.3 2 OTTHUMG00000013881.11 +9088 chr1 ENSEMBL gene 148263476 148263632 157.0 + 0 ENSG00000199879.1 snRNA RNU1-120P 3 +9089 chr1 HAVANA gene 148271884 148280749 420.0 - 0 ENSG00000234283.1 lincRNA LINC01731 2 OTTHUMG00000014090.1 +9090 chr1 HAVANA gene 148288001 148288951 285.0 - 0 ENSG00000228626.1 unprocessed_pseudogene AC245100.3 2 OTTHUMG00000014083.2 +9091 chr1 HAVANA gene 148295180 148297556 1918.0 + 0 ENSG00000238107.1 lincRNA AC245100.6 1 OTTHUMG00000014089.3 overlapping_locus +9092 chr1 HAVANA gene 148317683 148318013 331.0 - 0 ENSG00000235988.1 processed_pseudogene AC245100.5 2 OTTHUMG00000014088.2 +9093 chr1 ENSEMBL gene 148330271 148330394 124.0 + 0 ENSG00000252744.1 misc_RNA RF00019 3 +9094 chr1 ENSEMBL gene 148334479 148334554 76.0 - 0 ENSG00000283676.1 miRNA MIR5087 3 +9095 chr1 ENSEMBL gene 148334612 148334767 156.0 - 0 ENSG00000202408.2 snRNA RNU1-122P 3 +9096 chr1 HAVANA gene 148295895 148344636 2157.0 + 0 ENSG00000224481.2 lincRNA AC245100.1 2 OTTHUMG00000014087.2 ncRNA_host,overlapping_locus +9097 chr1 HAVANA gene 148358245 148358686 442.0 - 0 ENSG00000272824.1 lincRNA AC245100.7 2 OTTHUMG00000186413.1 +9098 chr1 ENSEMBL gene 148362370 148362533 164.0 - 0 ENSG00000207340.1 snRNA RNVU1-1 3 +9099 chr1 ENSEMBL gene 148385829 148385963 135.0 - 0 ENSG00000252135.1 snRNA RNVU1-2 3 +9100 chr1 ENSEMBL gene 148388282 148388363 82.0 + 0 ENSG00000278596.1 miRNA MIR6077 3 +9101 chr1 ENSEMBL gene 148388490 148388651 162.0 - 0 ENSG00000238825.1 snRNA RNU1-13P 3 +9102 chr1 ENSEMBL gene 148402715 148402875 161.0 + 0 ENSG00000201183.1 snRNA RNVU1-3 3 +9103 chr1 HAVANA gene 148402516 148432545 3330.0 + 0 ENSG00000231551.8 transcribed_unprocessed_pseudogene AC245100.4 2 OTTHUMG00000014085.4 +9104 chr1 HAVANA gene 148435105 148436926 1679.0 + 0 ENSG00000225871.2 processed_pseudogene AC245100.2 1 OTTHUMG00000014084.3 pseudo_consens +9105 chr1 HAVANA gene 148458643 148459689 140.0 - 0 ENSG00000285062.1 transcribed_unprocessed_pseudogene AC245100.9 2 OTTHUMG00000192550.1 overlapping_locus +9106 chr1 HAVANA gene 148458814 148459871 1058.0 + 0 ENSG00000280649.2 TEC AC245100.8 2 OTTHUMG00000192120.1 +9107 chr1 HAVANA gene 148479824 148483679 3856.0 - 0 ENSG00000236334.2 protein_coding PPIAL4G 2 OTTHUMG00000013629.2 retrogene +9108 chr1 HAVANA gene 148290889 148519604 7495.0 - 0 ENSG00000274020.2 processed_transcript LINC01138 2 OTTHUMG00000185296.4 ncRNA_host,overlapping_locus +9109 chr1 ENSEMBL gene 148522601 148522765 165.0 + 0 ENSG00000274210.1 snRNA RF00003 3 +9110 chr1 HAVANA gene 148531385 148679751 12116.0 - 0 ENSG00000270629.5 protein_coding NBPF14 2 OTTHUMG00000188198.5 +9111 chr1 ENSEMBL gene 148739379 148739479 101.0 + 0 ENSG00000252515.2 snRNA RNU6-1171P 3 +9112 chr1 HAVANA gene 148748894 148750099 1206.0 + 0 ENSG00000177144.7 protein_coding NUDT4B 2 OTTHUMG00000188673.2 retrogene +9113 chr1 HAVANA gene 148772640 148784594 576.0 - 0 ENSG00000275140.1 unprocessed_pseudogene SEC22B3 2 OTTHUMG00000188674.1 +9114 chr1 HAVANA gene 148795797 148796325 529.0 + 0 ENSG00000271546.1 processed_pseudogene AC245389.1 1 OTTHUMG00000184361.1 pseudo_consens +9115 chr1 ENSEMBL gene 148839483 148839732 250.0 - 0 ENSG00000252656.1 misc_RNA RN7SKP88 3 +9116 chr1 ENSEMBL gene 148939739 148939817 79.0 - 0 ENSG00000222788.1 snRNA RNU2-38P 3 +9117 chr1 HAVANA gene 149006309 149009527 406.0 - 0 ENSG00000254913.1 antisense AC239802.1 2 OTTHUMG00000165626.2 +9118 chr1 HAVANA gene 149018671 149026269 554.0 - 0 ENSG00000255148.2 antisense AC239802.2 2 OTTHUMG00000165625.1 +9119 chr1 HAVANA gene 148808181 149048286 27623.0 + 0 ENSG00000178104.19 protein_coding PDE4DIP 1 OTTHUMG00000013846.16 +9120 chr1 HAVANA gene 149048576 149051273 869.0 + 0 ENSG00000254539.1 lincRNA AC239804.1 2 OTTHUMG00000165519.2 +9121 chr1 HAVANA gene 149054027 149103561 9046.0 - 0 ENSG00000269713.7 protein_coding NBPF9 2 OTTHUMG00000013845.9 +9122 chr1 HAVANA gene 149111304 149121866 522.0 - 0 ENSG00000274019.1 unprocessed_pseudogene AC239804.2 2 OTTHUMG00000188566.1 +9123 chr1 ENSEMBL gene 149162783 149162944 162.0 - 0 ENSG00000201699.1 snRNA RNU1-59P 3 +9124 chr1 HAVANA gene 149176022 149251013 1331.0 + 0 ENSG00000274265.4 lincRNA AC245297.3 2 OTTHUMG00000188629.1 +9125 chr1 HAVANA gene 149264252 149264816 565.0 + 0 ENSG00000272755.1 lincRNA AC245297.2 2 OTTHUMG00000186408.2 +9126 chr1 ENSEMBL gene 149290513 149290762 250.0 + 0 ENSG00000273591.1 misc_RNA RF00100 3 +9127 chr1 HAVANA gene 149197992 149321732 933.0 - 0 ENSG00000215861.5 unprocessed_pseudogene AC245297.1 2 OTTHUMG00000078073.4 +9128 chr1 HAVANA gene 149345661 149357612 573.0 + 0 ENSG00000274423.1 unprocessed_pseudogene SEC22B2 2 OTTHUMG00000013745.8 reference_genome_error +9129 chr1 HAVANA gene 149390623 149556361 18785.0 + 0 ENSG00000271383.6 protein_coding NBPF19 2 OTTHUMG00000013900.11 +9130 chr1 HAVANA gene 149583865 149584464 600.0 + 0 ENSG00000263464.2 protein_coding PPIAL4C 2 OTTHUMG00000188675.1 retrogene +9131 chr1 HAVANA gene 149607467 149608516 143.0 + 0 ENSG00000284964.1 transcribed_unprocessed_pseudogene AC242842.2 2 OTTHUMG00000192548.1 overlapping_locus +9132 chr1 HAVANA gene 149607765 149612402 447.0 + 0 ENSG00000275557.1 processed_transcript AC242842.1 2 OTTHUMG00000182668.3 overlapping_locus +9133 chr1 ENSEMBL gene 149636766 149636929 164.0 + 0 ENSG00000206828.1 snRNA RF00003 3 +9134 chr1 HAVANA gene 149675205 149677740 2536.0 + 0 ENSG00000284842.1 transcribed_processed_pseudogene FAM91A2P 1 OTTHUMG00000192549.1 pseudo_consens,overlapping_locus +9135 chr1 HAVANA gene 149606334 149679523 8501.0 + 0 ENSG00000277147.5 transcribed_unprocessed_pseudogene LINC00869 2 OTTHUMG00000182426.5 overlapping_locus +9136 chr1 ENSEMBL gene 149700151 149700296 146.0 - 0 ENSG00000275229.1 snRNA RNU1-68P 3 +9137 chr1 HAVANA gene 149676851 149747818 3340.0 - 0 ENSG00000234232.7 transcribed_unprocessed_pseudogene AC243772.3 2 OTTHUMG00000013955.6 +9138 chr1 HAVANA gene 149754301 149754710 410.0 - 0 ENSG00000226500.2 processed_pseudogene AC243772.1 1 OTTHUMG00000012088.3 pseudo_consens +9139 chr1 HAVANA gene 149782671 149792518 2998.0 + 0 ENSG00000150337.13 protein_coding FCGR1A 2 OTTHUMG00000012089.5 +9140 chr1 HAVANA gene 149785659 149793020 3543.0 - 0 ENSG00000233030.2 antisense AC243772.2 2 OTTHUMG00000012090.1 overlapping_locus +9141 chr1 HAVANA gene 149782689 149812373 3196.0 - 0 ENSG00000203814.6 protein_coding HIST2H2BF 2 OTTHUMG00000183159.2 overlapping_locus +9142 chr1 HAVANA gene 149813271 149813681 411.0 - 0 ENSG00000183598.3 protein_coding HIST2H3D 2 OTTHUMG00000012092.2 +9143 chr1 HAVANA gene 149832659 149839767 1876.0 + 0 ENSG00000270882.2 protein_coding HIST2H4A 2 OTTHUMG00000012189.8 +9144 chr1 HAVANA gene 149839538 149841193 1656.0 - 0 ENSG00000203811.1 protein_coding HIST2H3C 2 OTTHUMG00000012190.1 +9145 chr1 HAVANA gene 149842188 149842736 549.0 - 0 ENSG00000203812.2 protein_coding HIST2H2AA3 2 OTTHUMG00000188678.1 +9146 chr1 HAVANA gene 149842875 149846486 3612.0 + 0 ENSG00000220323.4 transcribed_unprocessed_pseudogene HIST2H2BD 2 OTTHUMG00000035827.4 +9147 chr1 HAVANA gene 149844498 149850937 6440.0 - 0 ENSG00000261716.2 transcribed_unprocessed_pseudogene HIST2H2BC 2 OTTHUMG00000035826.4 +9148 chr1 HAVANA gene 149851061 149851624 564.0 + 0 ENSG00000272196.2 protein_coding HIST2H2AA4 2 OTTHUMG00000012097.1 +9149 chr1 HAVANA gene 149852619 149854274 1656.0 + 0 ENSG00000203852.3 protein_coding HIST2H3A 2 OTTHUMG00000012094.1 +9150 chr1 HAVANA gene 149854045 149861210 1929.0 - 0 ENSG00000270276.2 protein_coding HIST2H4B 2 OTTHUMG00000188201.2 +9151 chr1 HAVANA gene 149861271 149862504 1234.0 + 0 ENSG00000264207.1 antisense AC239868.1 2 OTTHUMG00000178927.1 +9152 chr1 HAVANA gene 149884459 149886652 2194.0 - 0 ENSG00000184678.10 protein_coding HIST2H2BE 2 OTTHUMG00000012095.1 +9153 chr1 HAVANA gene 149886975 149887364 390.0 + 0 ENSG00000184260.5 protein_coding HIST2H2AC 2 OTTHUMG00000035825.2 +9154 chr1 HAVANA gene 149887524 149887916 393.0 - 0 ENSG00000184270.4 protein_coding HIST2H2AB 2 OTTHUMG00000012085.2 +9155 chr1 HAVANA gene 149887890 149900798 1461.0 + 0 ENSG00000178096.8 protein_coding BOLA1 2 OTTHUMG00000012087.3 +9156 chr1 HAVANA gene 149903318 149917882 4824.0 - 0 ENSG00000159164.9 protein_coding SV2A 2 OTTHUMG00000012209.2 +9157 chr1 HAVANA gene 149923317 149928344 2245.0 - 0 ENSG00000143368.9 protein_coding SF3B4 2 OTTHUMG00000012208.3 +9158 chr1 HAVANA gene 149928651 149936869 4562.0 - 0 ENSG00000014914.20 protein_coding MTMR11 2 OTTHUMG00000012207.7 +9159 chr1 HAVANA gene 149937812 150010676 12177.0 - 0 ENSG00000264522.5 protein_coding OTUD7B 2 OTTHUMG00000012291.6 +9160 chr1 HAVANA gene 150053864 150055034 870.0 + 0 ENSG00000223945.2 processed_pseudogene AC244033.1 1 OTTHUMG00000012509.2 pseudo_consens +9161 chr1 HAVANA gene 150045660 150067701 3269.0 - 0 ENSG00000285184.2 bidirectional_promoter_lncRNA AC244033.2 2 OTTHUMG00000192484.2 +9162 chr1 HAVANA gene 150067279 150145329 6637.0 + 0 ENSG00000136631.14 protein_coding VPS45 2 OTTHUMG00000012511.10 +9163 chr1 HAVANA gene 150149183 150164720 6565.0 + 0 ENSG00000023902.13 protein_coding PLEKHO1 2 OTTHUMG00000012510.5 +9164 chr1 HAVANA gene 150173049 150181429 1155.0 + 0 ENSG00000285554.1 lincRNA AC242988.2 2 OTTHUMG00000193069.1 +9165 chr1 ENSEMBL gene 150211632 150211925 294.0 + 0 ENSG00000266187.2 misc_RNA RN7SL480P 3 +9166 chr1 HAVANA gene 150218417 150236156 3605.0 - 0 ENSG00000143401.14 protein_coding ANP32E 1 OTTHUMG00000012547.5 +9167 chr1 ENSEMBL gene 150236967 150237156 190.0 + 0 ENSG00000222222.1 snRNA RNU2-17P 3 +9168 chr1 HAVANA gene 150255095 150257286 714.0 - 0 ENSG00000276110.1 antisense AC242988.1 2 OTTHUMG00000185690.2 +9169 chr1 HAVANA gene 150257159 150265078 3833.0 + 0 ENSG00000118298.11 protein_coding CA14 2 OTTHUMG00000012549.7 +9170 chr1 HAVANA gene 150265399 150269580 3473.0 - 0 ENSG00000117362.12 protein_coding APH1A 2 OTTHUMG00000012545.3 +9171 chr1 HAVANA gene 150268200 150280916 1351.0 + 0 ENSG00000118292.8 protein_coding C1orf54 2 OTTHUMG00000012546.1 +9172 chr1 HAVANA gene 150282543 150287093 2696.0 + 0 ENSG00000159208.15 protein_coding CIART 2 OTTHUMG00000012548.4 +9173 chr1 HAVANA gene 150293720 150308979 1641.0 + 0 ENSG00000266472.5 protein_coding MRPS21 2 OTTHUMG00000012544.4 +9174 chr1 HAVANA gene 150321476 150353195 5373.0 + 0 ENSG00000117360.12 protein_coding PRPF3 2 OTTHUMG00000012807.2 +9175 chr1 HAVANA gene 150363091 150476566 8738.0 + 0 ENSG00000163125.15 protein_coding RPRD2 2 OTTHUMG00000012808.2 +9176 chr1 ENSEMBL gene 150492345 150492410 66.0 + 0 ENSG00000283933.1 miRNA MIR6878 3 +9177 chr1 HAVANA gene 150487364 150507609 4077.0 + 0 ENSG00000143374.16 protein_coding TARS2 2 OTTHUMG00000012809.4 ncRNA_host +9178 chr1 HAVANA gene 150508062 150513789 3360.0 + 0 ENSG00000143369.14 protein_coding ECM1 2 OTTHUMG00000012806.2 +9179 chr1 HAVANA gene 150515757 150518032 566.0 + 0 ENSG00000228126.1 lincRNA FALEC 2 OTTHUMG00000035849.1 +9180 chr1 ENSEMBL gene 150551929 150552014 86.0 + 0 ENSG00000264553.1 miRNA MIR4257 3 +9181 chr1 HAVANA gene 150548562 150557724 665.0 - 0 ENSG00000237781.3 antisense AL356356.1 2 OTTHUMG00000034864.3 +9182 chr1 HAVANA gene 150549369 150560937 6432.0 + 0 ENSG00000143382.14 protein_coding ADAMTSL4 2 OTTHUMG00000034863.5 ncRNA_host +9183 chr1 ENSEMBL gene 150566562 150566860 299.0 - 0 ENSG00000277452.1 misc_RNA RN7SL473P 3 +9184 chr1 ENSEMBL gene 150568971 150569269 299.0 - 0 ENSG00000274963.1 misc_RNA RN7SL600P 3 +9185 chr1 HAVANA gene 150560202 150574552 2622.0 - 0 ENSG00000203804.4 processed_transcript ADAMTSL4-AS1 2 OTTHUMG00000034866.2 ncRNA_host +9186 chr1 HAVANA gene 150574551 150579738 4371.0 - 0 ENSG00000143384.12 protein_coding MCL1 2 OTTHUMG00000034867.2 +9187 chr1 ENSEMBL gene 150600539 150600659 121.0 - 0 ENSG00000253047.1 snoRNA RF00561 3 +9188 chr1 ENSEMBL gene 150608507 150608623 117.0 - 0 ENSG00000276103.1 snRNA RF00015 3 +9189 chr1 HAVANA gene 150600851 150629612 5493.0 - 0 ENSG00000143420.18 protein_coding ENSA 1 OTTHUMG00000035004.5 ncRNA_host +9190 chr1 HAVANA gene 150646225 150697144 3329.0 - 0 ENSG00000143457.10 protein_coding GOLPH3L 2 OTTHUMG00000035009.3 +9191 chr1 ENSEMBL gene 150701866 150701972 107.0 + 0 ENSG00000206931.1 snRNA RNU6-1042P 3 +9192 chr1 HAVANA gene 150698060 150720888 2405.0 - 0 ENSG00000143452.15 protein_coding HORMAD1 2 OTTHUMG00000035005.2 +9193 chr1 HAVANA gene 150730196 150765957 4228.0 - 0 ENSG00000163131.10 protein_coding CTSS 2 OTTHUMG00000035010.2 +9194 chr1 HAVANA gene 150780272 150780644 373.0 + 0 ENSG00000236713.1 processed_pseudogene AL356292.1 1 OTTHUMG00000035006.1 pseudo_consens +9195 chr1 HAVANA gene 150800473 150801031 425.0 + 0 ENSG00000224690.2 processed_pseudogene UBE2D3P3 1 OTTHUMG00000035007.2 pseudo_consens +9196 chr1 HAVANA gene 150796208 150808323 1887.0 - 0 ENSG00000143387.12 protein_coding CTSK 2 OTTHUMG00000035008.3 +9197 chr1 ENSEMBL gene 150812591 150812698 108.0 - 0 ENSG00000200175.1 snRNA RNU6-1309P 3 +9198 chr1 HAVANA gene 150809705 150876768 6516.0 - 0 ENSG00000143437.20 protein_coding ARNT 1 OTTHUMG00000035011.3 ncRNA_host +9199 chr1 HAVANA gene 150881236 150881683 448.0 - 0 ENSG00000224800.1 processed_pseudogene RPS27AP6 1 OTTHUMG00000035012.1 pseudo_consens +9200 chr1 HAVANA gene 150903896 150904213 318.0 + 0 ENSG00000229357.1 processed_pseudogene CYCSP51 1 OTTHUMG00000035013.1 pseudo_consens +9201 chr1 HAVANA gene 150887136 150913292 1229.0 + 0 ENSG00000283324.1 protein_coding CTXND2 2 OTTHUMG00000191721.1 +9202 chr1 HAVANA gene 150926263 150964744 7093.0 + 0 ENSG00000143379.12 protein_coding SETDB1 1 OTTHUMG00000035003.7 +9203 chr1 HAVANA gene 150965245 150966256 778.0 + 0 ENSG00000259357.2 antisense AL590133.2 2 OTTHUMG00000172567.2 +9204 chr1 HAVANA gene 150960583 150975004 4644.0 - 0 ENSG00000143418.19 protein_coding CERS2 1 OTTHUMG00000035064.8 +9205 chr1 HAVANA gene 150973123 150975534 368.0 + 0 ENSG00000231073.1 antisense AL590133.1 2 OTTHUMG00000035065.1 +9206 chr1 HAVANA gene 150982017 150995634 1826.0 + 0 ENSG00000143412.9 protein_coding ANXA9 2 OTTHUMG00000035063.2 +9207 chr1 HAVANA gene 150996086 151008375 3792.0 - 0 ENSG00000143409.15 protein_coding MINDY1 2 OTTHUMG00000035061.7 +9208 chr1 ENSEMBL gene 151022746 151022852 107.0 - 0 ENSG00000200759.1 snRNA RNU6-884P 3 +9209 chr1 HAVANA gene 151008420 151035713 3063.0 + 0 ENSG00000143363.16 protein_coding PRUNE1 2 OTTHUMG00000035062.4 +9210 chr1 HAVANA gene 151036321 151047720 3809.0 + 0 ENSG00000163141.19 protein_coding BNIPL 1 OTTHUMG00000035157.9 +9211 chr1 HAVANA gene 151047740 151051986 2331.0 + 0 ENSG00000143443.9 protein_coding C1orf56 2 OTTHUMG00000035159.2 +9212 chr1 HAVANA gene 151057758 151068497 4075.0 + 0 ENSG00000213190.3 protein_coding MLLT11 2 OTTHUMG00000035160.2 +9213 chr1 HAVANA gene 151050971 151070325 4184.0 - 0 ENSG00000197622.12 protein_coding CDC42SE1 2 OTTHUMG00000035158.2 +9214 chr1 HAVANA gene 151111912 151112728 171.0 - 0 ENSG00000233717.1 processed_pseudogene RPS29P29 1 OTTHUMG00000012215.2 pseudo_consens +9215 chr1 HAVANA gene 151070578 151125542 9189.0 + 0 ENSG00000143458.11 protein_coding GABPB2 2 OTTHUMG00000012193.5 +9216 chr1 HAVANA gene 151130075 151131610 1536.0 - 0 ENSG00000261168.1 sense_overlapping AL592424.1 2 OTTHUMG00000176093.1 +9217 chr1 HAVANA gene 151131685 151146664 5809.0 - 0 ENSG00000143434.15 protein_coding SEMA6C 2 OTTHUMG00000012261.3 +9218 chr1 HAVANA gene 151156629 151159749 1178.0 + 0 ENSG00000163154.5 protein_coding TNFAIP8L2 2 OTTHUMG00000012259.2 overlapping_locus +9219 chr1 HAVANA gene 151159748 151165948 2508.0 - 0 ENSG00000163155.11 protein_coding LYSMD1 2 OTTHUMG00000012260.3 +9220 chr1 HAVANA gene 151156664 151170297 3265.0 + 0 ENSG00000163156.11 protein_coding SCNM1 2 OTTHUMG00000012258.9 overlapping_locus +9221 chr1 HAVANA gene 151169986 151176284 1843.0 - 0 ENSG00000163157.14 protein_coding TMOD4 1 OTTHUMG00000012350.6 overlapping_locus +9222 chr1 HAVANA gene 151169987 151195321 4545.0 - 0 ENSG00000163159.12 protein_coding VPS72 1 OTTHUMG00000012345.10 overlapping_locus +9223 chr1 HAVANA gene 151197949 151249536 5405.0 + 0 ENSG00000143398.19 protein_coding PIP5K1A 1 OTTHUMG00000012351.22 +9224 chr1 HAVANA gene 151254703 151267479 3027.0 + 0 ENSG00000159352.15 protein_coding PSMD4 1 OTTHUMG00000012349.12 +9225 chr1 HAVANA gene 151280024 151281929 622.0 - 0 ENSG00000232671.5 antisense AL391069.2 1 OTTHUMG00000012346.6 +9226 chr1 HAVANA gene 151281618 151292180 6349.0 + 0 ENSG00000143373.17 protein_coding ZNF687 1 OTTHUMG00000012347.12 +9227 chr1 ENSEMBL gene 151300665 151300964 300.0 - 0 ENSG00000265753.2 misc_RNA RN7SL444P 3 +9228 chr1 HAVANA gene 151291797 151327715 5456.0 - 0 ENSG00000143393.16 protein_coding PI4KB 1 OTTHUMG00000012348.14 ncRNA_host +9229 chr1 HAVANA gene 151327949 151328429 481.0 + 0 ENSG00000273481.1 lincRNA AL391069.4 2 OTTHUMG00000186416.2 +9230 chr1 HAVANA gene 151340648 151341966 358.0 + 0 ENSG00000224645.1 antisense AL391069.1 2 OTTHUMG00000073673.1 +9231 chr1 HAVANA gene 151340640 151347357 4586.0 - 0 ENSG00000143390.17 protein_coding RFX5 1 OTTHUMG00000012495.24 +9232 chr1 HAVANA gene 151346967 151348027 618.0 + 0 ENSG00000237976.1 antisense AL391069.3 2 OTTHUMG00000012496.1 +9233 chr1 HAVANA gene 151364302 151372733 3504.0 - 0 ENSG00000143416.20 protein_coding SELENBP1 2 OTTHUMG00000012498.25 +9234 chr1 HAVANA gene 151399534 151401944 2158.0 + 0 ENSG00000159377.10 protein_coding PSMB4 2 OTTHUMG00000012494.4 +9235 chr1 ENSEMBL gene 151439000 151439095 96.0 + 0 ENSG00000238711.1 misc_RNA RNY4P25 3 +9236 chr1 HAVANA gene 151402724 151459465 10272.0 - 0 ENSG00000143442.21 protein_coding POGZ 1 OTTHUMG00000012499.9 +9237 chr1 ENSEMBL gene 151527831 151527938 108.0 - 0 ENSG00000252840.1 snoRNA RF00405 3 +9238 chr1 HAVANA gene 151510510 151538692 6616.0 + 0 ENSG00000143375.14 protein_coding CGN 2 OTTHUMG00000012497.16 +9239 chr1 ENSEMBL gene 151545796 151545891 96.0 + 0 ENSG00000207606.1 miRNA MIR554 3 +9240 chr1 HAVANA gene 151557446 151557940 495.0 + 0 ENSG00000223861.1 processed_pseudogene AL365436.1 1 OTTHUMG00000012537.2 pseudo_consens,overlapping_locus +9241 chr1 HAVANA gene 151540516 151561855 526.0 + 0 ENSG00000232536.1 sense_intronic AL365436.2 2 OTTHUMG00000133697.1 ncRNA_host,overlapping_locus +9242 chr1 HAVANA gene 151540305 151583583 3878.0 + 0 ENSG00000143367.15 protein_coding TUFT1 2 OTTHUMG00000012536.3 ncRNA_host,overlapping_locus +9243 chr1 HAVANA gene 151612038 151613363 535.0 - 0 ENSG00000250734.2 antisense AL391335.1 2 OTTHUMG00000150102.2 +9244 chr1 ENSEMBL gene 151629324 151629430 107.0 + 0 ENSG00000206635.1 snRNA RNU6-1062P 3 +9245 chr1 HAVANA gene 151612006 151699091 16711.0 + 0 ENSG00000143376.13 protein_coding SNX27 2 OTTHUMG00000013052.11 ncRNA_host +9246 chr1 HAVANA gene 151701026 151708386 386.0 + 0 ENSG00000227045.1 antisense AL589765.1 2 OTTHUMG00000045372.1 +9247 chr1 HAVANA gene 151702404 151716814 4439.0 - 0 ENSG00000159409.14 protein_coding CELF3 2 OTTHUMG00000013064.3 +9248 chr1 HAVANA gene 151710433 151729805 2261.0 + 0 ENSG00000178796.12 protein_coding RIIAD1 1 OTTHUMG00000013055.4 +9249 chr1 ENSEMBL gene 151747597 151747700 104.0 - 0 ENSG00000206980.1 snRNA RNU6-662P 3 +9250 chr1 HAVANA gene 151757659 151758442 462.0 + 0 ENSG00000236940.1 processed_pseudogene AL589765.3 1 OTTHUMG00000013056.2 pseudo_consens,overlapping_locus +9251 chr1 HAVANA gene 151755541 151759911 629.0 + 0 ENSG00000269621.1 antisense AL589765.7 2 OTTHUMG00000183004.1 overlapping_locus +9252 chr1 HAVANA gene 151759643 151763564 1812.0 - 0 ENSG00000143436.10 protein_coding MRPL9 2 OTTHUMG00000013063.4 overlapping_locus +9253 chr1 HAVANA gene 151765709 151766389 424.0 + 0 ENSG00000232937.1 sense_intronic AL589765.2 2 OTTHUMG00000045373.1 overlapping_locus +9254 chr1 HAVANA gene 151766486 151767000 515.0 - 0 ENSG00000268288.1 antisense AL589765.5 2 OTTHUMG00000183005.1 overlapping_locus +9255 chr1 HAVANA gene 151763384 151769501 382.0 - 0 ENSG00000249602.1 antisense AL589765.4 2 OTTHUMG00000045374.2 overlapping_locus +9256 chr1 HAVANA gene 151762899 151771334 4633.0 + 0 ENSG00000143450.16 protein_coding OAZ3 1 OTTHUMG00000013061.7 overlapping_locus +9257 chr1 HAVANA gene 151770107 151791416 5092.0 - 0 ENSG00000182134.15 protein_coding TDRKH 1 OTTHUMG00000013062.4 +9258 chr1 HAVANA gene 151790804 151794402 1141.0 + 0 ENSG00000203288.3 antisense TDRKH-AS1 1 OTTHUMG00000013060.2 +9259 chr1 HAVANA gene 151798054 151798602 549.0 + 0 ENSG00000269489.1 lincRNA AL589765.6 2 OTTHUMG00000183006.1 +9260 chr1 HAVANA gene 151800264 151806154 3379.0 - 0 ENSG00000213171.2 protein_coding LINGO4 2 OTTHUMG00000013059.1 overlapping_locus +9261 chr1 HAVANA gene 151806071 151831872 6314.0 - 0 ENSG00000143365.17 protein_coding RORC 2 OTTHUMG00000013053.2 overlapping_locus +9262 chr1 HAVANA gene 151837819 151840557 1757.0 - 0 ENSG00000225556.1 protein_coding C2CD4D 2 OTTHUMG00000167218.1 +9263 chr1 ENSEMBL gene 151841736 151841837 102.0 - 0 ENSG00000201134.1 misc_RNA RF00019 3 +9264 chr1 HAVANA gene 151841877 151850385 506.0 + 0 ENSG00000234614.1 antisense AL450992.2 1 OTTHUMG00000013071.1 +9265 chr1 HAVANA gene 151847263 151853697 984.0 - 0 ENSG00000196407.11 protein_coding THEM5 2 OTTHUMG00000013070.4 +9266 chr1 HAVANA gene 151885251 151899333 2795.0 + 0 ENSG00000285651.1 antisense AL450992.3 2 OTTHUMG00000192814.1 +9267 chr1 HAVANA gene 151873584 151909808 4390.0 - 0 ENSG00000159445.12 protein_coding THEM4 2 OTTHUMG00000013049.2 +9268 chr1 HAVANA gene 151949523 151950912 1390.0 - 0 ENSG00000223810.2 processed_pseudogene KRT8P28 1 OTTHUMG00000013050.2 pseudo_consens +9269 chr1 HAVANA gene 151982915 151994390 1543.0 - 0 ENSG00000197747.8 protein_coding S100A10 2 OTTHUMG00000013068.2 +9270 chr1 HAVANA gene 152018662 152022508 568.0 + 0 ENSG00000240667.1 unprocessed_pseudogene NBPF18P 2 OTTHUMG00000013051.1 overlapping_locus +9271 chr1 HAVANA gene 151994531 152042774 4109.0 + 0 ENSG00000229021.2 antisense AL450992.1 2 OTTHUMG00000013054.1 overlapping_locus +9272 chr1 HAVANA gene 152032506 152047907 680.0 - 0 ENSG00000163191.5 protein_coding S100A11 2 OTTHUMG00000013069.1 +9273 chr1 HAVANA gene 152077952 152078211 260.0 + 0 ENSG00000232678.2 processed_pseudogene SPTLC1P4 1 OTTHUMG00000013057.2 pseudo_consens +9274 chr1 HAVANA gene 152079557 152080903 1347.0 - 0 ENSG00000285818.1 unprocessed_pseudogene AL591893.1 2 OTTHUMG00000193395.1 +9275 chr1 HAVANA gene 152084144 152089064 3603.0 - 0 ENSG00000182898.3 protein_coding TCHHL1 2 OTTHUMG00000013058.2 +9276 chr1 HAVANA gene 152106317 152115454 6995.0 - 0 ENSG00000159450.12 protein_coding TCHH 2 OTTHUMG00000013066.2 +9277 chr1 HAVANA gene 152122534 152125065 789.0 + 0 ENSG00000226716.1 antisense AL589986.1 2 OTTHUMG00000013065.1 +9278 chr1 HAVANA gene 152153595 152159228 3569.0 - 0 ENSG00000215853.3 protein_coding RPTN 2 OTTHUMG00000154095.1 +9279 chr1 HAVANA gene 152124016 152196699 1112.0 - 0 ENSG00000233792.3 transcribed_processed_pseudogene PUDPP2 1 OTTHUMG00000013067.3 pseudo_consens +9280 chr1 HAVANA gene 152205858 152207057 397.0 + 0 ENSG00000236427.1 lincRNA AL589986.2 2 OTTHUMG00000012244.1 overlapping_locus +9281 chr1 HAVANA gene 152212082 152224193 9623.0 - 0 ENSG00000197915.5 protein_coding HRNR 2 OTTHUMG00000012243.1 +9282 chr1 HAVANA gene 152302175 152325203 12747.0 - 0 ENSG00000143631.10 protein_coding FLG 2 OTTHUMG00000012202.1 +9283 chr1 HAVANA gene 152348735 152360006 9124.0 - 0 ENSG00000143520.6 protein_coding FLG2 2 OTTHUMG00000012245.12 +9284 chr1 HAVANA gene 152399577 152399769 193.0 + 0 ENSG00000183586.8 processed_pseudogene HMGN3P1 1 OTTHUMG00000012385.2 pseudo_consens,overlapping_locus +9285 chr1 HAVANA gene 152409243 152414263 1902.0 - 0 ENSG00000143536.7 protein_coding CRNN 2 OTTHUMG00000012383.1 +9286 chr1 HAVANA gene 152168125 152445456 7691.0 + 0 ENSG00000237975.6 antisense FLG-AS1 2 OTTHUMG00000012203.5 overlapping_locus +9287 chr1 HAVANA gene 152510844 152512177 819.0 + 0 ENSG00000186207.4 protein_coding LCE5A 2 OTTHUMG00000014401.1 +9288 chr1 HAVANA gene 152514502 152516010 700.0 + 0 ENSG00000169509.5 protein_coding CRCT1 2 OTTHUMG00000012391.1 +9289 chr1 HAVANA gene 152565654 152566772 611.0 - 0 ENSG00000185966.3 protein_coding LCE3E 2 OTTHUMG00000012393.1 +9290 chr1 HAVANA gene 152579381 152580504 613.0 - 0 ENSG00000163202.4 protein_coding LCE3D 2 OTTHUMG00000012384.1 +9291 chr1 HAVANA gene 152600662 152601086 425.0 + 0 ENSG00000244057.4 protein_coding LCE3C 2 OTTHUMG00000014403.2 +9292 chr1 HAVANA gene 152613811 152614098 288.0 + 0 ENSG00000187238.5 protein_coding LCE3B 2 OTTHUMG00000012395.3 +9293 chr1 HAVANA gene 152622834 152623103 270.0 - 0 ENSG00000185962.1 protein_coding LCE3A 2 OTTHUMG00000012397.3 +9294 chr1 HAVANA gene 152644393 152644717 325.0 - 0 ENSG00000226947.1 unprocessed_pseudogene LCEP4 2 OTTHUMG00000012398.1 +9295 chr1 HAVANA gene 152656332 152656501 170.0 + 0 ENSG00000285753.1 unprocessed_pseudogene AL139247.1 2 OTTHUMG00000012386.3 +9296 chr1 HAVANA gene 152663396 152664659 609.0 + 0 ENSG00000187223.3 protein_coding LCE2D 2 OTTHUMG00000014400.1 +9297 chr1 HAVANA gene 152675295 152676574 614.0 + 0 ENSG00000187180.3 protein_coding LCE2C 2 OTTHUMG00000012389.1 +9298 chr1 HAVANA gene 152686123 152687401 612.0 + 0 ENSG00000159455.8 protein_coding LCE2B 2 OTTHUMG00000012404.1 +9299 chr1 HAVANA gene 152698364 152699442 592.0 + 0 ENSG00000187173.3 protein_coding LCE2A 2 OTTHUMG00000012392.1 +9300 chr1 HAVANA gene 152708160 152709491 680.0 + 0 ENSG00000187170.4 protein_coding LCE4A 2 OTTHUMG00000014394.2 +9301 chr1 HAVANA gene 152719522 152720470 949.0 + 0 ENSG00000198854.5 protein_coding C1orf68 2 OTTHUMG00000012401.2 +9302 chr1 HAVANA gene 152737518 152737868 351.0 + 0 ENSG00000229713.1 unprocessed_pseudogene LCEP2 2 OTTHUMG00000012399.1 +9303 chr1 HAVANA gene 152744299 152744606 308.0 + 0 ENSG00000233819.1 unprocessed_pseudogene LCEP1 2 OTTHUMG00000012400.1 +9304 chr1 HAVANA gene 152759561 152762052 2492.0 + 0 ENSG00000203786.6 protein_coding KPRP 2 OTTHUMG00000012402.2 +9305 chr1 HAVANA gene 152776372 152776728 357.0 + 0 ENSG00000240386.3 protein_coding LCE1F 2 OTTHUMG00000012403.3 +9306 chr1 HAVANA gene 152786214 152788426 1299.0 + 0 ENSG00000186226.8 protein_coding LCE1E 2 OTTHUMG00000012405.2 +9307 chr1 HAVANA gene 152796751 152798181 430.0 + 0 ENSG00000172155.9 protein_coding LCE1D 2 OTTHUMG00000012444.2 +9308 chr1 HAVANA gene 152804835 152806628 692.0 - 0 ENSG00000197084.5 protein_coding LCE1C 2 OTTHUMG00000012445.3 +9309 chr1 HAVANA gene 152811971 152813109 1139.0 + 0 ENSG00000196734.8 protein_coding LCE1B 2 OTTHUMG00000014402.1 +9310 chr1 HAVANA gene 152827473 152827894 422.0 + 0 ENSG00000186844.5 protein_coding LCE1A 2 OTTHUMG00000012447.2 +9311 chr1 HAVANA gene 152842868 152843983 628.0 + 0 ENSG00000235942.2 protein_coding LCE6A 2 OTTHUMG00000012448.2 +9312 chr1 HAVANA gene 152859996 152860985 345.0 + 0 ENSG00000285946.1 protein_coding AL162596.1 2 OTTHUMG00000193401.1 +9313 chr1 HAVANA gene 152878317 152885047 775.0 + 0 ENSG00000163206.5 protein_coding SMCP 2 OTTHUMG00000012452.1 +9314 chr1 HAVANA gene 152908545 152911886 2153.0 + 0 ENSG00000163207.6 protein_coding IVL 2 OTTHUMG00000012451.1 +9315 chr1 HAVANA gene 152930040 152949210 1997.0 - 0 ENSG00000224308.1 antisense LINC01527 2 OTTHUMG00000012449.1 +9316 chr1 HAVANA gene 152947154 152949258 817.0 + 0 ENSG00000283227.1 protein_coding SPRR5 2 OTTHUMG00000177850.2 +9317 chr1 HAVANA gene 152970666 152972574 733.0 + 0 ENSG00000184148.3 protein_coding SPRR4 2 OTTHUMG00000012450.1 +9318 chr1 HAVANA gene 152985231 152985500 270.0 + 0 ENSG00000169474.4 protein_coding SPRR1A 2 OTTHUMG00000014404.2 +9319 chr1 HAVANA gene 153001747 153003856 1441.0 + 0 ENSG00000163209.14 protein_coding SPRR3 2 OTTHUMG00000013872.2 +9320 chr1 ENSEMBL gene 153012482 153012614 133.0 - 0 ENSG00000252920.1 snoRNA RF00322 3 +9321 chr1 HAVANA gene 153023962 153024260 299.0 + 0 ENSG00000234262.1 unprocessed_pseudogene AL356867.1 2 OTTHUMG00000013866.1 +9322 chr1 HAVANA gene 153031202 153032900 620.0 + 0 ENSG00000169469.8 protein_coding SPRR1B 2 OTTHUMG00000013869.1 +9323 chr1 HAVANA gene 153039725 153041931 1057.0 - 0 ENSG00000163216.6 protein_coding SPRR2D 2 OTTHUMG00000014396.1 +9324 chr1 HAVANA gene 153056113 153057537 709.0 - 0 ENSG00000241794.1 protein_coding SPRR2A 2 OTTHUMG00000014395.1 +9325 chr1 HAVANA gene 153070224 153070840 617.0 - 0 ENSG00000196805.7 protein_coding SPRR2B 2 OTTHUMG00000013863.3 +9326 chr1 HAVANA gene 153093135 153106184 734.0 - 0 ENSG00000203785.8 protein_coding SPRR2E 2 OTTHUMG00000014397.1 +9327 chr1 HAVANA gene 153112114 153113515 681.0 - 0 ENSG00000244094.1 protein_coding SPRR2F 2 OTTHUMG00000014398.1 +9328 chr1 HAVANA gene 153140491 153140709 219.0 - 0 ENSG00000229035.2 unprocessed_pseudogene SPRR2C 2 OTTHUMG00000013864.2 +9329 chr1 HAVANA gene 153149582 153150869 568.0 - 0 ENSG00000159516.8 protein_coding SPRR2G 2 OTTHUMG00000014399.1 +9330 chr1 HAVANA gene 153174518 153191676 2254.0 + 0 ENSG00000229699.1 lincRNA AL161636.1 2 OTTHUMG00000013934.1 +9331 chr1 HAVANA gene 153203443 153205120 523.0 + 0 ENSG00000203784.2 protein_coding LELP1 2 OTTHUMG00000013935.1 +9332 chr1 HAVANA gene 153217584 153219317 1229.0 + 0 ENSG00000203783.4 protein_coding PRR9 2 OTTHUMG00000013936.1 +9333 chr1 HAVANA gene 153225080 153226006 927.0 + 0 ENSG00000230779.1 processed_pseudogene AL161636.2 1 OTTHUMG00000013937.1 pseudo_consens +9334 chr1 HAVANA gene 153259700 153262122 1230.0 + 0 ENSG00000203782.5 protein_coding LOR 2 OTTHUMG00000013938.1 +9335 chr1 HAVANA gene 153297862 153310718 1173.0 - 0 ENSG00000159527.3 protein_coding PGLYRP3 2 OTTHUMG00000014044.1 +9336 chr1 ENSEMBL gene 153331622 153331728 107.0 + 0 ENSG00000207321.1 snRNA RNU6-160P 3 +9337 chr1 HAVANA gene 153330120 153348840 2272.0 - 0 ENSG00000163218.14 protein_coding PGLYRP4 2 OTTHUMG00000037057.1 +9338 chr1 HAVANA gene 153357854 153361027 577.0 + 0 ENSG00000163220.10 protein_coding S100A9 2 OTTHUMG00000013125.1 +9339 chr1 HAVANA gene 153373706 153375649 518.0 - 0 ENSG00000163221.8 protein_coding S100A12 2 OTTHUMG00000013127.2 +9340 chr1 HAVANA gene 153379821 153380799 690.0 - 0 ENSG00000237008.2 processed_pseudogene LAPTM4BP1 1 OTTHUMG00000013126.2 pseudo_consens +9341 chr1 HAVANA gene 153390032 153391188 1006.0 - 0 ENSG00000143546.9 protein_coding S100A8 2 OTTHUMG00000013124.2 +9342 chr1 HAVANA gene 153396591 153396771 181.0 - 0 ENSG00000224784.2 processed_pseudogene S100A15A 2 OTTHUMG00000013128.2 +9343 chr1 HAVANA gene 153416524 153423225 4457.0 + 0 ENSG00000184330.11 protein_coding S100A7A 2 OTTHUMG00000013122.2 +9344 chr1 HAVANA gene 153427020 153428401 275.0 - 0 ENSG00000203781.4 unprocessed_pseudogene S100A7P1 2 OTTHUMG00000013121.2 +9345 chr1 HAVANA gene 153437058 153439949 339.0 - 0 ENSG00000197364.7 protein_coding S100A7L2 2 OTTHUMG00000013129.4 +9346 chr1 HAVANA gene 153457744 153460701 536.0 - 0 ENSG00000143556.8 protein_coding S100A7 2 OTTHUMG00000013123.1 +9347 chr1 ENSEMBL gene 153500463 153500764 302.0 - 0 ENSG00000263841.2 misc_RNA RN7SL44P 3 +9348 chr1 HAVANA gene 153533603 153535115 531.0 + 0 ENSG00000238279.1 antisense BX470102.1 2 OTTHUMG00000013548.1 +9349 chr1 HAVANA gene 153534599 153536244 971.0 - 0 ENSG00000197956.9 protein_coding S100A6 2 OTTHUMG00000013549.4 +9350 chr1 HAVANA gene 153537147 153541765 784.0 - 0 ENSG00000196420.7 protein_coding S100A5 2 OTTHUMG00000013547.2 +9351 chr1 HAVANA gene 153547329 153549372 955.0 - 0 ENSG00000188015.9 protein_coding S100A3 2 OTTHUMG00000013550.2 overlapping_locus +9352 chr1 HAVANA gene 153543613 153550136 1025.0 - 0 ENSG00000196154.11 protein_coding S100A4 2 OTTHUMG00000013546.3 overlapping_locus +9353 chr1 HAVANA gene 153561108 153567890 1567.0 - 0 ENSG00000196754.10 protein_coding S100A2 1 OTTHUMG00000035031.3 +9354 chr1 HAVANA gene 153586813 153606283 3176.0 - 0 ENSG00000285867.1 lincRNA BX470102.2 2 OTTHUMG00000192833.1 +9355 chr1 HAVANA gene 153606886 153613145 1701.0 - 0 ENSG00000188643.10 protein_coding S100A16 2 OTTHUMG00000013545.4 +9356 chr1 HAVANA gene 153614255 153616986 1277.0 - 0 ENSG00000189334.8 protein_coding S100A14 2 OTTHUMG00000035030.3 +9357 chr1 HAVANA gene 153618787 153631360 2216.0 - 0 ENSG00000189171.14 protein_coding S100A13 2 OTTHUMG00000036641.4 overlapping_locus +9358 chr1 HAVANA gene 153627926 153632039 3030.0 + 0 ENSG00000160678.11 protein_coding S100A1 2 OTTHUMG00000037041.3 +9359 chr1 HAVANA gene 153626332 153634340 995.0 - 0 ENSG00000271853.5 processed_transcript AL162258.1 2 OTTHUMG00000185744.1 overlapping_locus +9360 chr1 HAVANA gene 153631438 153634397 1054.0 - 0 ENSG00000272030.1 antisense AL162258.2 2 OTTHUMG00000185745.1 overlapping_locus +9361 chr1 HAVANA gene 153633982 153646306 5625.0 + 0 ENSG00000160679.12 protein_coding CHTOP 2 OTTHUMG00000037052.1 +9362 chr1 HAVANA gene 153658654 153661830 1544.0 + 0 ENSG00000143553.10 protein_coding SNAPIN 2 OTTHUMG00000037086.1 +9363 chr1 HAVANA gene 153661788 153671048 2281.0 - 0 ENSG00000143621.16 protein_coding ILF2 2 OTTHUMG00000037087.1 +9364 chr1 ENSEMBL gene 153689705 153689793 89.0 - 0 ENSG00000274940.1 miRNA MIR8083 3 +9365 chr1 HAVANA gene 153678637 153693992 5003.0 + 0 ENSG00000169418.9 protein_coding NPR1 2 OTTHUMG00000037085.3 +9366 chr1 ENSEMBL gene 153704088 153704385 298.0 + 0 ENSG00000242565.3 misc_RNA RN7SL372P 3 +9367 chr1 HAVANA gene 153717303 153718347 752.0 - 0 ENSG00000235015.1 processed_pseudogene GEMIN2P1 1 OTTHUMG00000037088.1 pseudo_consens +9368 chr1 ENSEMBL gene 153726252 153726353 102.0 - 0 ENSG00000199565.1 misc_RNA RF00019 3 +9369 chr1 HAVANA gene 153746851 153751227 235.0 - 0 ENSG00000243613.1 antisense AL513523.4 2 OTTHUMG00000041238.1 overlapping_locus +9370 chr1 HAVANA gene 153750983 153752176 316.0 - 0 ENSG00000233222.2 antisense AL513523.3 2 OTTHUMG00000041239.1 overlapping_locus +9371 chr1 HAVANA gene 153728067 153774808 10450.0 + 0 ENSG00000143624.13 protein_coding INTS3 2 OTTHUMG00000037089.5 overlapping_locus +9372 chr1 HAVANA gene 153774354 153780157 5470.0 + 0 ENSG00000143554.13 protein_coding SLC27A3 1 OTTHUMG00000037155.5 overlapping_locus +9373 chr1 ENSEMBL gene 153785720 153785821 102.0 - 0 ENSG00000207039.1 misc_RNA RF00019 3 +9374 chr1 HAVANA gene 153793947 153802091 2303.0 + 0 ENSG00000231827.3 transcribed_unprocessed_pseudogene AL513523.2 2 OTTHUMG00000037161.2 +9375 chr1 HAVANA gene 153852106 153853414 1309.0 - 0 ENSG00000223599.1 processed_pseudogene AL513523.1 1 OTTHUMG00000037163.1 pseudo_consens,overlapping_locus +9376 chr1 HAVANA gene 153890595 153890865 271.0 + 0 ENSG00000236327.2 processed_pseudogene AL831737.1 1 OTTHUMG00000037154.2 pseudo_consens +9377 chr1 HAVANA gene 153789030 153923360 9247.0 - 0 ENSG00000143614.9 protein_coding GATAD2B 2 OTTHUMG00000037162.6 overlapping_locus +9378 chr1 HAVANA gene 153923337 153935240 1267.0 + 0 ENSG00000284738.1 antisense AL358472.5 2 OTTHUMG00000192262.1 +9379 chr1 HAVANA gene 153929501 153946696 7584.0 - 0 ENSG00000198837.9 protein_coding DENND4B 1 OTTHUMG00000037157.4 +9380 chr1 HAVANA gene 153947669 153958625 3612.0 - 0 ENSG00000160741.16 protein_coding CRTC2 1 OTTHUMG00000037156.4 +9381 chr1 ENSEMBL gene 153962351 153962420 70.0 - 0 ENSG00000276584.1 miRNA MIR6737 3 +9382 chr1 HAVANA gene 153964361 153965070 710.0 + 0 ENSG00000282386.1 antisense AL358472.4 2 OTTHUMG00000191427.1 +9383 chr1 HAVANA gene 153966516 153966930 415.0 + 0 ENSG00000273026.1 antisense AL358472.3 2 OTTHUMG00000186417.1 +9384 chr1 HAVANA gene 153959099 153968184 3388.0 - 0 ENSG00000143570.17 protein_coding SLC39A1 2 OTTHUMG00000037158.3 ncRNA_host,overlapping_locus +9385 chr1 HAVANA gene 153967534 153974363 2904.0 + 0 ENSG00000143578.15 protein_coding CREB3L4 2 OTTHUMG00000037159.3 +9386 chr1 HAVANA gene 153959151 153975887 2253.0 - 0 ENSG00000285779.1 protein_coding AL358472.7 2 OTTHUMG00000193417.1 ncRNA_host,overlapping_locus +9387 chr1 HAVANA gene 153974269 153977688 1496.0 - 0 ENSG00000143543.14 protein_coding JTB 2 OTTHUMG00000036590.3 overlapping_locus +9388 chr1 HAVANA gene 153977743 153979160 1418.0 + 0 ENSG00000272654.1 lincRNA AL358472.2 2 OTTHUMG00000186418.1 +9389 chr1 HAVANA gene 153975850 153986246 1706.0 - 0 ENSG00000285641.1 protein_coding AL358472.6 2 OTTHUMG00000193418.1 overlapping_locus +9390 chr1 HAVANA gene 153981617 153986358 2751.0 - 0 ENSG00000143545.8 protein_coding RAB13 2 OTTHUMG00000036589.2 overlapping_locus +9391 chr1 HAVANA gene 153990755 153992155 1035.0 + 0 ENSG00000177954.12 protein_coding RPS27 2 OTTHUMG00000036591.3 +9392 chr1 HAVANA gene 153995632 153995960 329.0 + 0 ENSG00000231416.1 processed_pseudogene AL358472.1 1 OTTHUMG00000157000.1 pseudo_consens +9393 chr1 ENSEMBL gene 154039916 154040022 107.0 - 0 ENSG00000200220.1 snRNA RNU6-179P 3 +9394 chr1 HAVANA gene 154078866 154079963 607.0 + 0 ENSG00000231837.2 processed_pseudogene RPS7P2 1 OTTHUMG00000036513.2 pseudo_consens +9395 chr1 ENSEMBL gene 154104521 154104592 72.0 - 0 ENSG00000263987.1 miRNA MIR5698 3 +9396 chr1 HAVANA gene 153992685 154155116 5889.0 - 0 ENSG00000143552.9 protein_coding NUP210L 2 OTTHUMG00000035852.3 ncRNA_host +9397 chr1 ENSEMBL gene 154166245 154166549 305.0 - 0 ENSG00000264384.2 misc_RNA RN7SL431P 3 +9398 chr1 ENSEMBL gene 154193665 154193743 79.0 - 0 ENSG00000215938.3 miRNA MIR190B 3 +9399 chr1 HAVANA gene 154155304 154194648 8389.0 - 0 ENSG00000143549.19 protein_coding TPM3 2 OTTHUMG00000035853.6 ncRNA_host +9400 chr1 HAVANA gene 154199372 154206333 387.0 - 0 ENSG00000163263.6 protein_coding C1orf189 2 OTTHUMG00000035982.1 +9401 chr1 HAVANA gene 154206696 154220637 2670.0 - 0 ENSG00000143612.20 protein_coding C1orf43 2 OTTHUMG00000035981.5 +9402 chr1 ENSEMBL gene 154259727 154259862 136.0 + 0 ENSG00000201129.1 snoRNA SNORA58B 3 +9403 chr1 HAVANA gene 154220179 154271510 7503.0 + 0 ENSG00000143569.18 protein_coding UBAP2L 2 OTTHUMG00000035983.4 ncRNA_host +9404 chr1 HAVANA gene 154272511 154275875 2155.0 + 0 ENSG00000143575.14 protein_coding HAX1 2 OTTHUMG00000035978.4 +9405 chr1 ENSEMBL gene 154288460 154288527 68.0 + 0 ENSG00000252682.1 snoRNA RF00273 3 +9406 chr1 ENSEMBL gene 154295503 154295601 99.0 + 0 ENSG00000212292.1 snRNA RNU6-239P 3 +9407 chr1 ENSEMBL gene 154297650 154297748 99.0 + 0 ENSG00000222457.1 snRNA RNU6-121P 3 +9408 chr1 HAVANA gene 154312462 154313084 234.0 + 0 ENSG00000278694.1 unprocessed_pseudogene AL354980.1 1 OTTHUMG00000187536.1 pseudo_consens +9409 chr1 HAVANA gene 154321090 154325325 2292.0 + 0 ENSG00000143595.12 protein_coding AQP10 2 OTTHUMG00000035980.1 +9410 chr1 ENSEMBL gene 154338743 154338802 60.0 + 0 ENSG00000238365.3 snRNA RNU7-57P 3 +9411 chr1 HAVANA gene 154325553 154351307 7572.0 + 0 ENSG00000143515.16 protein_coding ATP8B2 2 OTTHUMG00000035979.5 ncRNA_host +9412 chr1 HAVANA gene 154378207 154379089 883.0 - 0 ENSG00000226855.1 processed_pseudogene RPSAP17 1 OTTHUMG00000036074.1 pseudo_consens,overlapping_locus +9413 chr1 HAVANA gene 154376966 154379273 317.0 - 0 ENSG00000237920.2 unprocessed_pseudogene AL162591.1 1 OTTHUMG00000036075.2 pseudo_consens,overlapping_locus +9414 chr1 HAVANA gene 154402328 154406564 1756.0 - 0 ENSG00000228013.1 antisense IL6R-AS1 2 OTTHUMG00000036070.1 +9415 chr1 HAVANA gene 154414369 154415137 769.0 - 0 ENSG00000228264.1 processed_pseudogene PSMD8P1 1 OTTHUMG00000036071.1 pseudo_consens +9416 chr1 HAVANA gene 154405193 154469450 6453.0 + 0 ENSG00000160712.12 protein_coding IL6R 2 OTTHUMG00000036073.3 +9417 chr1 HAVANA gene 154480012 154481501 681.0 + 0 ENSG00000273110.1 antisense AL162591.2 2 OTTHUMG00000186422.1 +9418 chr1 HAVANA gene 154469772 154502113 8441.0 - 0 ENSG00000169291.9 protein_coding SHE 1 OTTHUMG00000036072.3 +9419 chr1 HAVANA gene 154502219 154548147 2706.0 + 0 ENSG00000163239.12 protein_coding TDRD10 2 OTTHUMG00000037264.3 +9420 chr1 HAVANA gene 154553609 154555017 432.0 + 0 ENSG00000229780.1 antisense UBE2Q1-AS1 2 OTTHUMG00000037263.1 +9421 chr1 HAVANA gene 154548577 154559028 4161.0 - 0 ENSG00000160714.9 protein_coding UBE2Q1 2 OTTHUMG00000037265.2 +9422 chr1 HAVANA gene 154579065 154579663 321.0 - 0 ENSG00000233875.1 antisense AL592078.1 2 OTTHUMG00000041315.1 +9423 chr1 HAVANA gene 154567781 154580026 5892.0 + 0 ENSG00000160716.5 protein_coding CHRNB2 2 OTTHUMG00000037262.4 +9424 chr1 HAVANA gene 154582057 154628013 9691.0 - 0 ENSG00000160710.16 protein_coding ADAR 1 OTTHUMG00000037261.16 +9425 chr1 HAVANA gene 154697455 154870280 13598.0 - 0 ENSG00000143603.18 protein_coding KCNN3 2 OTTHUMG00000037260.3 +9426 chr1 HAVANA gene 154924734 154936991 1280.0 - 0 ENSG00000163344.5 protein_coding PMVK 2 OTTHUMG00000037415.1 +9427 chr1 HAVANA gene 154937370 154938059 690.0 + 0 ENSG00000270361.1 lincRNA AL451085.1 2 OTTHUMG00000185167.1 +9428 chr1 ENSEMBL gene 154950210 154950492 283.0 - 0 ENSG00000268154.2 misc_RNA RF00017 3 +9429 chr1 HAVANA gene 154944076 154956123 3851.0 - 0 ENSG00000163346.16 protein_coding PBXIP1 2 OTTHUMG00000037369.5 ncRNA_host +9430 chr1 HAVANA gene 154961825 154962623 799.0 + 0 ENSG00000271380.1 antisense AL451085.2 2 OTTHUMG00000185142.1 +9431 chr1 HAVANA gene 154957026 154963853 3630.0 - 0 ENSG00000163348.3 protein_coding PYGO2 2 OTTHUMG00000037370.1 overlapping_locus +9432 chr1 HAVANA gene 154962298 154974395 4342.0 - 0 ENSG00000160691.18 protein_coding SHC1 2 OTTHUMG00000037295.6 overlapping_locus +9433 chr1 ENSEMBL gene 154975693 154975783 91.0 + 0 ENSG00000264349.1 miRNA MIR4258 3 +9434 chr1 HAVANA gene 154974653 154979249 2338.0 + 0 ENSG00000173207.12 protein_coding CKS1B 2 OTTHUMG00000037413.3 ncRNA_host +9435 chr1 HAVANA gene 154983338 154993111 4019.0 + 0 ENSG00000160688.18 protein_coding FLAD1 2 OTTHUMG00000037416.1 +9436 chr1 HAVANA gene 154993586 154994315 730.0 + 0 ENSG00000163352.5 protein_coding LENEP 2 OTTHUMG00000037417.3 +9437 chr1 HAVANA gene 155002630 155018522 4303.0 + 0 ENSG00000160685.13 protein_coding ZBTB7B 2 OTTHUMG00000037414.1 +9438 chr1 HAVANA gene 155018520 155033781 3071.0 - 0 ENSG00000163354.14 protein_coding DCST2 2 OTTHUMG00000037371.8 +9439 chr1 HAVANA gene 155045191 155046118 822.0 - 0 ENSG00000232093.1 antisense DCST1-AS1 2 OTTHUMG00000041316.1 +9440 chr1 HAVANA gene 155033824 155050930 3193.0 + 0 ENSG00000163357.10 protein_coding DCST1 2 OTTHUMG00000041314.2 overlapping_locus +9441 chr1 HAVANA gene 155050566 155062775 6584.0 + 0 ENSG00000143537.13 protein_coding ADAM15 2 OTTHUMG00000013898.5 overlapping_locus +9442 chr1 HAVANA gene 155063731 155069553 1263.0 + 0 ENSG00000243364.7 protein_coding EFNA4 2 OTTHUMG00000035309.3 overlapping_locus +9443 chr1 HAVANA gene 155063748 155086807 1042.0 + 0 ENSG00000251246.1 protein_coding AL691442.1 1 OTTHUMG00000161134.1 overlapping_locus +9444 chr1 HAVANA gene 155078872 155087538 1909.0 + 0 ENSG00000143590.13 protein_coding EFNA3 2 OTTHUMG00000035313.1 overlapping_locus +9445 chr1 ENSEMBL gene 155120490 155120598 109.0 + 0 ENSG00000202027.1 misc_RNA RF00019 3 +9446 chr1 HAVANA gene 155127460 155134857 2539.0 + 0 ENSG00000169242.11 protein_coding EFNA1 2 OTTHUMG00000035312.2 +9447 chr1 HAVANA gene 155135344 155138857 2340.0 + 0 ENSG00000169241.18 protein_coding SLC50A1 2 OTTHUMG00000035333.4 +9448 chr1 HAVANA gene 155139891 155140595 622.0 - 0 ENSG00000179085.7 protein_coding DPM3 2 OTTHUMG00000035335.1 +9449 chr1 HAVANA gene 155148544 155148813 270.0 + 0 ENSG00000223452.3 processed_pseudogene HMGN2P18 2 OTTHUMG00000013903.1 +9450 chr1 HAVANA gene 155169408 155173475 3826.0 - 0 ENSG00000163463.11 protein_coding KRTCAP2 2 OTTHUMG00000013904.1 overlapping_locus +9451 chr1 HAVANA gene 155173787 155184971 4533.0 + 0 ENSG00000163462.17 protein_coding TRIM46 2 OTTHUMG00000035680.2 +9452 chr1 HAVANA gene 155169409 155187272 753.0 - 0 ENSG00000273088.1 protein_coding AL713999.1 2 OTTHUMG00000185855.2 overlapping_locus +9453 chr1 HAVANA gene 155185824 155192916 4717.0 - 0 ENSG00000185499.16 protein_coding MUC1 1 OTTHUMG00000035681.4 overlapping_locus +9454 chr1 ENSEMBL gene 155195177 155195272 96.0 + 0 ENSG00000284586.1 miRNA MIR92B 3 +9455 chr1 HAVANA gene 155195004 155205495 2466.0 + 0 ENSG00000231064.7 antisense AC234582.1 2 OTTHUMG00000035709.2 ncRNA_host +9456 chr1 HAVANA gene 155195588 155209051 4623.0 - 0 ENSG00000169231.13 protein_coding THBS3 2 OTTHUMG00000035710.4 +9457 chr1 HAVANA gene 155211151 155213819 568.0 - 0 ENSG00000236263.1 antisense AC234582.2 2 OTTHUMG00000035711.1 +9458 chr1 HAVANA gene 155208699 155213824 3278.0 + 0 ENSG00000173171.14 protein_coding MTX1 2 OTTHUMG00000035708.3 +9459 chr1 HAVANA gene 155213821 155227422 3656.0 - 0 ENSG00000160766.14 transcribed_unprocessed_pseudogene GBAP1 2 OTTHUMG00000176393.4 +9460 chr1 HAVANA gene 155230975 155234325 838.0 + 0 ENSG00000236675.1 unprocessed_pseudogene MTX1P1 2 OTTHUMG00000035843.1 +9461 chr1 HAVANA gene 155234452 155244699 3648.0 - 0 ENSG00000177628.15 protein_coding GBA 2 OTTHUMG00000035841.2 +9462 chr1 HAVANA gene 155247205 155255483 4468.0 - 0 ENSG00000160767.20 protein_coding FAM189B 1 OTTHUMG00000035844.3 +9463 chr1 HAVANA gene 155255979 155262430 2442.0 - 0 ENSG00000116521.10 protein_coding SCAMP3 2 OTTHUMG00000035874.2 +9464 chr1 HAVANA gene 155262868 155278491 3670.0 - 0 ENSG00000176444.18 protein_coding CLK2 2 OTTHUMG00000035873.2 +9465 chr1 HAVANA gene 155277583 155289848 4121.0 + 0 ENSG00000143630.9 protein_coding HCN3 2 OTTHUMG00000035872.2 +9466 chr1 HAVANA gene 155289293 155301438 3168.0 - 0 ENSG00000143627.19 protein_coding PKLR 2 OTTHUMG00000035875.6 +9467 chr1 HAVANA gene 155308748 155320666 3718.0 + 0 ENSG00000160752.14 protein_coding FDPS 2 OTTHUMG00000013909.3 +9468 chr1 HAVANA gene 155316863 155324176 3516.0 - 0 ENSG00000225855.6 antisense RUSC1-AS1 2 OTTHUMG00000013912.2 +9469 chr1 HAVANA gene 155320896 155331114 5427.0 + 0 ENSG00000160753.15 protein_coding RUSC1 2 OTTHUMG00000013910.5 +9470 chr1 ENSEMBL gene 155346350 155346445 96.0 - 0 ENSG00000283701.1 miRNA MIR555 3 +9471 chr1 ENSEMBL gene 155358712 155358818 107.0 - 0 ENSG00000207134.1 snRNA RNU6-106P 3 +9472 chr1 HAVANA gene 155396010 155396978 448.0 - 0 ENSG00000227773.1 sense_intronic ASH1L-IT1 2 OTTHUMG00000014015.1 overlapping_locus +9473 chr1 ENSEMBL gene 155419397 155419500 104.0 + 0 ENSG00000207144.1 snRNA RNU6-1297P 3 +9474 chr1 HAVANA gene 155433178 155434262 1085.0 + 0 ENSG00000237872.4 processed_pseudogene POU5F1P4 1 OTTHUMG00000014016.2 pseudo_consens +9475 chr1 HAVANA gene 155335268 155562807 13296.0 - 0 ENSG00000116539.12 protein_coding ASH1L 2 OTTHUMG00000014011.3 ncRNA_host,overlapping_locus +9476 chr1 HAVANA gene 155562042 155563944 1209.0 + 0 ENSG00000235919.4 antisense ASH1L-AS1 2 OTTHUMG00000014012.3 +9477 chr1 HAVANA gene 155566050 155566306 257.0 - 0 ENSG00000271267.1 processed_pseudogene AL353807.4 1 OTTHUMG00000184416.1 pseudo_consens +9478 chr1 HAVANA gene 155590601 155591262 662.0 - 0 ENSG00000223503.1 processed_pseudogene AL353807.1 1 OTTHUMG00000057605.1 pseudo_consens +9479 chr1 HAVANA gene 155586644 155602197 278.0 + 0 ENSG00000225082.2 unprocessed_pseudogene DAP3P1 2 OTTHUMG00000014013.2 +9480 chr1 HAVANA gene 155609776 155610380 220.0 - 0 ENSG00000232519.2 antisense AL353807.2 2 OTTHUMG00000014027.2 +9481 chr1 HAVANA gene 155610205 155614967 4208.0 + 0 ENSG00000125459.15 protein_coding MSTO1 2 OTTHUMG00000014014.8 +9482 chr1 HAVANA gene 155614726 155660245 2505.0 - 0 ENSG00000246203.2 unprocessed_pseudogene AL353807.3 2 OTTHUMG00000014028.1 overlapping_locus +9483 chr1 HAVANA gene 155659443 155689000 5001.0 - 0 ENSG00000163374.19 protein_coding YY1AP1 1 OTTHUMG00000035437.8 overlapping_locus +9484 chr1 HAVANA gene 155710098 155710563 157.0 - 0 ENSG00000227673.1 antisense AL162734.1 2 OTTHUMG00000035438.1 +9485 chr1 HAVANA gene 155687960 155739010 4588.0 + 0 ENSG00000132676.15 protein_coding DAP3 2 OTTHUMG00000035439.5 +9486 chr1 HAVANA gene 155745829 155750137 1709.0 + 0 ENSG00000203761.5 unprocessed_pseudogene MSTO2P 2 OTTHUMG00000035441.2 +9487 chr1 HAVANA gene 155845367 155846624 941.0 + 0 ENSG00000234937.1 processed_pseudogene AL139128.1 1 OTTHUMG00000014102.1 pseudo_consens +9488 chr1 HAVANA gene 155749662 155859400 11967.0 - 0 ENSG00000116580.18 protein_coding GON4L 2 OTTHUMG00000014106.4 +9489 chr1 HAVANA gene 155859509 155885199 5240.0 + 0 ENSG00000132718.8 protein_coding SYT11 2 OTTHUMG00000014105.1 +9490 chr1 ENSEMBL gene 155894281 155894386 106.0 + 0 ENSG00000283442.1 snRNA RF00015 3 +9491 chr1 HAVANA gene 155897808 155911404 3919.0 - 0 ENSG00000143622.10 protein_coding RIT1 2 OTTHUMG00000014104.3 +9492 chr1 ENSEMBL gene 155919909 155920045 137.0 - 0 ENSG00000207475.1 snoRNA SNORA80E 3 +9493 chr1 ENSEMBL gene 155925958 155926085 128.0 - 0 ENSG00000280466.1 scaRNA SCARNA4 3 +9494 chr1 ENSEMBL gene 155925958 155926086 129.0 - 0 ENSG00000281394.1 scaRNA SCARNA4 3 +9495 chr1 HAVANA gene 155913043 155934400 5635.0 - 0 ENSG00000132680.10 protein_coding KHDC4 2 OTTHUMG00000014103.2 ncRNA_host +9496 chr1 HAVANA gene 155941710 155942949 1240.0 + 0 ENSG00000173080.5 protein_coding RXFP4 2 OTTHUMG00000017463.1 +9497 chr1 ENSEMBL gene 155951273 155951336 64.0 - 0 ENSG00000277817.1 miRNA MIR6738 3 +9498 chr1 HAVANA gene 155978799 155982986 2157.0 + 0 ENSG00000273002.1 antisense AL355388.2 2 OTTHUMG00000186425.1 +9499 chr1 HAVANA gene 155991390 156001787 401.0 + 0 ENSG00000224276.1 antisense AL355388.1 1 OTTHUMG00000017459.1 +9500 chr1 HAVANA gene 155946851 156007070 9135.0 - 0 ENSG00000116584.17 protein_coding ARHGEF2 2 OTTHUMG00000017464.8 ncRNA_host +9501 chr1 HAVANA gene 156009048 156020959 6651.0 - 0 ENSG00000163479.13 protein_coding SSR2 1 OTTHUMG00000017456.3 +9502 chr1 HAVANA gene 156001953 156032907 1553.0 + 0 ENSG00000285677.1 antisense AL355388.3 2 OTTHUMG00000193043.1 +9503 chr1 HAVANA gene 156035301 156053794 3878.0 - 0 ENSG00000160803.7 protein_coding UBQLN4 2 OTTHUMG00000017461.2 +9504 chr1 HAVANA gene 156054752 156058510 1438.0 + 0 ENSG00000116586.11 protein_coding LAMTOR2 2 OTTHUMG00000017462.1 +9505 chr1 HAVANA gene 156061160 156070514 1699.0 + 0 ENSG00000132698.14 protein_coding RAB25 2 OTTHUMG00000017457.2 +9506 chr1 HAVANA gene 156072013 156081998 6124.0 - 0 ENSG00000254726.2 protein_coding MEX3A 2 OTTHUMG00000017465.3 +9507 chr1 HAVANA gene 156082573 156140089 6985.0 + 0 ENSG00000160789.19 protein_coding LMNA 1 OTTHUMG00000013961.5 +9508 chr1 HAVANA gene 156147366 156177752 6822.0 + 0 ENSG00000196189.12 protein_coding SEMA4A 2 OTTHUMG00000014042.4 +9509 chr1 ENSEMBL gene 156192063 156192203 141.0 - 0 ENSG00000252236.1 snoRNA RF00568 3 +9510 chr1 HAVANA gene 156193932 156212796 7293.0 + 0 ENSG00000160785.13 protein_coding SLC25A44 2 OTTHUMG00000014816.2 +9511 chr1 HAVANA gene 156212993 156240042 2520.0 + 0 ENSG00000160783.19 protein_coding PMF1 1 OTTHUMG00000177123.3 overlapping_locus +9512 chr1 HAVANA gene 156241962 156243321 1190.0 + 0 ENSG00000242252.1 protein_coding BGLAP 2 OTTHUMG00000014819.2 overlapping_locus +9513 chr1 HAVANA gene 156212982 156243332 1007.0 + 0 ENSG00000260238.6 protein_coding PMF1-BGLAP 2 OTTHUMG00000014817.6 overlapping_locus +9514 chr1 HAVANA gene 156243321 156248117 2439.0 - 0 ENSG00000160781.16 protein_coding PAQR6 2 OTTHUMG00000017490.6 +9515 chr1 HAVANA gene 156249224 156282825 5304.0 - 0 ENSG00000198952.8 protein_coding SMG5 2 OTTHUMG00000017491.4 +9516 chr1 HAVANA gene 156282935 156293185 3067.0 + 0 ENSG00000163472.18 protein_coding TMEM79 2 OTTHUMG00000019788.1 +9517 chr1 HAVANA gene 156290089 156295689 3471.0 - 0 ENSG00000198715.12 protein_coding GLMP 2 OTTHUMG00000019789.7 +9518 chr1 HAVANA gene 156298624 156299299 676.0 - 0 ENSG00000189030.9 protein_coding VHLL 2 OTTHUMG00000024058.3 retrogene +9519 chr1 HAVANA gene 156337314 156346995 1115.0 + 0 ENSG00000163467.11 protein_coding TSACC 2 OTTHUMG00000024060.2 +9520 chr1 HAVANA gene 156308968 156367873 4018.0 - 0 ENSG00000163468.14 protein_coding CCT3 1 OTTHUMG00000024061.7 +9521 chr1 HAVANA gene 156369212 156385219 3383.0 + 0 ENSG00000132677.12 protein_coding RHBG 2 OTTHUMG00000024057.9 +9522 chr1 HAVANA gene 156388226 156395609 5586.0 + 0 ENSG00000237390.1 lincRNA AL139130.1 2 OTTHUMG00000031021.1 +9523 chr1 ENSEMBL gene 156420341 156420429 89.0 - 0 ENSG00000207933.3 miRNA MIR9-1 3 +9524 chr1 HAVANA gene 156404250 156430701 12314.0 - 0 ENSG00000125462.16 protein_coding C1orf61 2 OTTHUMG00000031022.3 ncRNA_host +9525 chr1 HAVANA gene 156446412 156456577 990.0 - 0 ENSG00000236947.5 lincRNA AL139412.1 2 OTTHUMG00000033094.1 +9526 chr1 ENSEMBL gene 156484098 156484210 113.0 - 0 ENSG00000206651.1 misc_RNA RF00019 3 +9527 chr1 HAVANA gene 156463727 156500828 6400.0 - 0 ENSG00000116604.17 protein_coding MEF2D 2 OTTHUMG00000033095.8 ncRNA_host +9528 chr1 HAVANA gene 156509854 156511681 1828.0 + 0 ENSG00000260460.1 lincRNA AL365181.1 2 OTTHUMG00000176105.1 +9529 chr1 HAVANA gene 156525405 156572604 6742.0 - 0 ENSG00000183856.10 protein_coding IQGAP3 2 OTTHUMG00000033114.3 +9530 chr1 HAVANA gene 156579727 156586770 2829.0 + 0 ENSG00000187862.11 protein_coding TTC24 2 OTTHUMG00000033202.4 +9531 chr1 HAVANA gene 156591762 156594299 1933.0 + 0 ENSG00000163382.11 protein_coding NAXE 2 OTTHUMG00000033206.1 +9532 chr1 HAVANA gene 156594487 156601496 4437.0 - 0 ENSG00000160818.16 protein_coding GPATCH4 1 OTTHUMG00000033203.4 +9533 chr1 HAVANA gene 156614742 156615288 547.0 - 0 ENSG00000272971.1 lincRNA AL365181.4 2 OTTHUMG00000186427.1 +9534 chr1 HAVANA gene 156619294 156625725 2241.0 + 0 ENSG00000132702.12 protein_coding HAPLN2 2 OTTHUMG00000033205.4 +9535 chr1 HAVANA gene 156637783 156641004 3222.0 - 0 ENSG00000272068.1 lincRNA AL365181.2 2 OTTHUMG00000185553.1 +9536 chr1 HAVANA gene 156641666 156644887 3222.0 - 0 ENSG00000272405.1 antisense AL365181.3 2 OTTHUMG00000185554.1 +9537 chr1 HAVANA gene 156641390 156659532 4931.0 + 0 ENSG00000132692.18 protein_coding BCAN 2 OTTHUMG00000033322.3 +9538 chr1 HAVANA gene 156646507 156661424 758.0 - 0 ENSG00000229953.1 antisense AL590666.2 1 OTTHUMG00000033321.1 +9539 chr1 HAVANA gene 156668763 156677397 5558.0 - 0 ENSG00000132688.10 protein_coding NES 2 OTTHUMG00000034299.2 +9540 chr1 HAVANA gene 156687695 156691997 4122.0 - 0 ENSG00000237588.2 lincRNA AL590666.3 2 OTTHUMG00000041297.2 +9541 chr1 HAVANA gene 156689676 156704757 956.0 + 0 ENSG00000285570.1 antisense AL590666.4 2 OTTHUMG00000193260.1 +9542 chr1 HAVANA gene 156699606 156705816 1100.0 - 0 ENSG00000143320.8 protein_coding CRABP2 2 OTTHUMG00000041300.3 +9543 chr1 HAVANA gene 156712212 156713174 433.0 - 0 ENSG00000223356.1 antisense AL590666.1 1 OTTHUMG00000041299.1 +9544 chr1 HAVANA gene 156721891 156728799 5262.0 - 0 ENSG00000143319.16 protein_coding ISG20L2 2 OTTHUMG00000041301.3 +9545 chr1 HAVANA gene 156728442 156736960 3169.0 + 0 ENSG00000143303.11 protein_coding RRNAD1 1 OTTHUMG00000041302.9 +9546 chr1 HAVANA gene 156737303 156741590 1695.0 - 0 ENSG00000143314.12 protein_coding MRPL24 2 OTTHUMG00000041296.3 +9547 chr1 HAVANA gene 156742107 156766925 3745.0 - 0 ENSG00000143321.18 protein_coding HDGF 2 OTTHUMG00000041295.1 +9548 chr1 HAVANA gene 156750610 156800817 4108.0 + 0 ENSG00000143294.14 protein_coding PRCC 1 OTTHUMG00000041294.4 +9549 chr1 HAVANA gene 156806243 156816862 2512.0 - 0 ENSG00000027869.11 protein_coding SH2D2A 2 OTTHUMG00000041305.2 +9550 chr1 HAVANA gene 156840063 156859018 5101.0 - 0 ENSG00000027644.4 protein_coding INSRR 2 OTTHUMG00000041291.1 +9551 chr1 HAVANA gene 156815640 156881850 4356.0 + 0 ENSG00000198400.11 protein_coding NTRK1 2 OTTHUMG00000041304.3 +9552 chr1 HAVANA gene 156893698 156916434 5530.0 + 0 ENSG00000187800.13 protein_coding PEAR1 2 OTTHUMG00000041293.4 +9553 chr1 HAVANA gene 156920650 156933094 2631.0 + 0 ENSG00000160838.13 protein_coding LRRC71 2 OTTHUMG00000041298.1 +9554 chr1 ENSEMBL gene 156936131 156936244 114.0 - 0 ENSG00000211581.1 miRNA MIR765 3 +9555 chr1 ENSEMBL gene 156985755 156986049 295.0 - 0 ENSG00000266160.2 misc_RNA RN7SL612P 3 +9556 chr1 HAVANA gene 156934840 157045370 8950.0 - 0 ENSG00000132694.18 protein_coding ARHGEF11 2 OTTHUMG00000041292.1 ncRNA_host +9557 chr1 HAVANA gene 157059232 157060762 1531.0 - 0 ENSG00000237842.2 processed_pseudogene AL157713.1 1 OTTHUMG00000041328.2 pseudo_consens +9558 chr1 HAVANA gene 157073257 157074703 1447.0 + 0 ENSG00000224520.2 processed_pseudogene KRT8P45 1 OTTHUMG00000041329.2 pseudo_consens +9559 chr1 HAVANA gene 157092044 157099808 1976.0 - 0 ENSG00000253831.1 protein_coding ETV3L 2 OTTHUMG00000041325.2 +9560 chr1 HAVANA gene 157128362 157128671 310.0 + 0 ENSG00000235700.1 processed_pseudogene CYCSP52 1 OTTHUMG00000041326.1 pseudo_consens +9561 chr1 HAVANA gene 157121191 157138474 6707.0 - 0 ENSG00000117036.11 protein_coding ETV3 2 OTTHUMG00000034298.2 +9562 chr1 HAVANA gene 157171116 157191963 5817.0 + 0 ENSG00000229961.2 transcribed_unitary_pseudogene AL357143.1 2 OTTHUMG00000041327.2 +9563 chr1 HAVANA gene 157203604 157205062 421.0 - 0 ENSG00000284592.1 unprocessed_pseudogene AL357143.2 2 OTTHUMG00000191902.1 +9564 chr1 HAVANA gene 157232231 157237136 399.0 - 0 ENSG00000228239.1 lincRNA AL138900.1 2 OTTHUMG00000017482.1 +9565 chr1 HAVANA gene 157280716 157283068 629.0 + 0 ENSG00000271736.1 lincRNA AL138900.3 2 OTTHUMG00000185718.1 +9566 chr1 HAVANA gene 157287703 157288053 156.0 - 0 ENSG00000237189.1 lincRNA AL138900.2 2 OTTHUMG00000017483.1 +9567 chr1 HAVANA gene 157513377 157552520 12419.0 - 0 ENSG00000143297.18 protein_coding FCRL5 2 OTTHUMG00000017481.1 +9568 chr1 HAVANA gene 157573749 157598080 3875.0 - 0 ENSG00000163518.10 protein_coding FCRL4 2 OTTHUMG00000035488.2 +9569 chr1 HAVANA gene 157629939 157630728 505.0 - 0 ENSG00000236731.1 unprocessed_pseudogene AL135929.2 2 OTTHUMG00000035489.2 +9570 chr1 HAVANA gene 157636300 157640301 552.0 - 0 ENSG00000233712.1 unprocessed_pseudogene AL135929.1 2 OTTHUMG00000035486.2 +9571 chr1 HAVANA gene 157691762 157696459 758.0 + 0 ENSG00000227217.1 antisense AL356276.1 1 OTTHUMG00000019395.1 +9572 chr1 HAVANA gene 157674321 157700857 6538.0 - 0 ENSG00000160856.20 protein_coding FCRL3 1 OTTHUMG00000019400.8 +9573 chr1 HAVANA gene 157709086 157709643 558.0 + 0 ENSG00000231700.3 processed_pseudogene AL356276.2 1 OTTHUMG00000019396.2 pseudo_consens +9574 chr1 HAVANA gene 157724180 157725020 841.0 - 0 ENSG00000232366.1 processed_pseudogene VDAC1P9 1 OTTHUMG00000019397.1 pseudo_consens +9575 chr1 HAVANA gene 157745733 157777132 5058.0 - 0 ENSG00000132704.15 protein_coding FCRL2 2 OTTHUMG00000019399.2 +9576 chr1 HAVANA gene 157794403 157820105 3935.0 - 0 ENSG00000163534.14 protein_coding FCRL1 2 OTTHUMG00000019398.3 +9577 chr1 HAVANA gene 157861197 157861460 264.0 + 0 ENSG00000227425.1 processed_pseudogene MRPS21P2 1 OTTHUMG00000022446.1 pseudo_consens +9578 chr1 HAVANA gene 157830914 157898256 2456.0 - 0 ENSG00000073754.5 protein_coding CD5L 2 OTTHUMG00000022440.2 +9579 chr1 HAVANA gene 157925065 157949071 2140.0 + 0 ENSG00000236957.7 transcribed_unprocessed_pseudogene AL139010.1 2 OTTHUMG00000022437.2 +9580 chr1 HAVANA gene 158025550 158031166 587.0 + 0 ENSG00000226520.1 sense_intronic KIRREL1-IT1 2 OTTHUMG00000035615.1 overlapping_locus +9581 chr1 HAVANA gene 157993273 158100262 7872.0 + 0 ENSG00000183853.17 protein_coding KIRREL1 2 OTTHUMG00000022438.5 overlapping_locus +9582 chr1 HAVANA gene 158132040 158146929 1001.0 - 0 ENSG00000231666.6 lincRNA LINC01704 2 OTTHUMG00000022441.2 +9583 chr1 HAVANA gene 158175850 158177755 1906.0 - 0 ENSG00000227295.2 processed_pseudogene ELL2P1 1 OTTHUMG00000022442.1 pseudo_consens +9584 chr1 HAVANA gene 158179947 158184896 2253.0 + 0 ENSG00000158473.6 protein_coding CD1D 2 OTTHUMG00000022436.1 +9585 chr1 HAVANA gene 158195633 158196131 499.0 - 0 ENSG00000229914.1 processed_pseudogene AL138899.2 1 OTTHUMG00000022443.1 pseudo_consens +9586 chr1 HAVANA gene 158197922 158203877 1999.0 - 0 ENSG00000176320.2 lincRNA AL138899.1 2 OTTHUMG00000022444.1 +9587 chr1 HAVANA gene 158254137 158258269 2096.0 + 0 ENSG00000158477.6 protein_coding CD1A 2 OTTHUMG00000017512.2 +9588 chr1 HAVANA gene 158266753 158267320 263.0 - 0 ENSG00000230942.1 processed_pseudogene HMGN1P5 2 OTTHUMG00000017511.1 +9589 chr1 HAVANA gene 158289786 158293630 1435.0 + 0 ENSG00000158481.12 protein_coding CD1C 1 OTTHUMG00000017514.3 +9590 chr1 HAVANA gene 158327951 158331531 1395.0 - 0 ENSG00000158485.10 protein_coding CD1B 2 OTTHUMG00000017513.2 +9591 chr1 HAVANA gene 158353696 158357553 2203.0 + 0 ENSG00000158488.15 protein_coding CD1E 2 OTTHUMG00000017515.4 +9592 chr1 HAVANA gene 158398522 158399466 945.0 - 0 ENSG00000186306.1 protein_coding OR10T2 2 OTTHUMG00000017521.2 +9593 chr1 HAVANA gene 158418210 158426237 3023.0 - 0 ENSG00000180708.5 protein_coding OR10K2 2 OTTHUMG00000019638.3 +9594 chr1 HAVANA gene 158445068 158446014 947.0 - 0 ENSG00000203758.4 unprocessed_pseudogene OR10T1P 2 OTTHUMG00000019631.1 +9595 chr1 HAVANA gene 158454198 158455273 1076.0 + 0 ENSG00000236257.1 processed_pseudogene EI24P2 1 OTTHUMG00000017519.1 pseudo_consens +9596 chr1 HAVANA gene 158461574 158470857 3936.0 + 0 ENSG00000173285.4 protein_coding OR10K1 2 OTTHUMG00000017517.3 +9597 chr1 HAVANA gene 158472220 158480936 1192.0 + 0 ENSG00000198965.4 protein_coding OR10R2 2 OTTHUMG00000019632.4 +9598 chr1 HAVANA gene 158491219 158492160 942.0 + 0 ENSG00000198703.2 unprocessed_pseudogene OR10R3P 2 OTTHUMG00000019630.1 +9599 chr1 HAVANA gene 158474454 158494886 2597.0 - 0 ENSG00000236656.1 antisense AL365440.2 2 OTTHUMG00000017520.2 +9600 chr1 HAVANA gene 158514785 158515925 1141.0 + 0 ENSG00000227445.1 unprocessed_pseudogene OR10R1P 2 OTTHUMG00000019628.1 +9601 chr1 HAVANA gene 158523672 158525838 2167.0 + 0 ENSG00000231434.1 processed_pseudogene AL365440.1 1 OTTHUMG00000019634.1 pseudo_consens +9602 chr1 HAVANA gene 158544550 158554405 5128.0 - 0 ENSG00000197532.2 protein_coding OR6Y1 2 OTTHUMG00000019629.3 +9603 chr1 HAVANA gene 158560606 158570580 3255.0 - 0 ENSG00000186440.2 protein_coding OR6P1 2 OTTHUMG00000019633.3 +9604 chr1 HAVANA gene 158578919 158579899 981.0 - 0 ENSG00000279111.2 protein_coding OR10X1 2 OTTHUMG00000019635.3 +9605 chr1 HAVANA gene 158605268 158612514 6323.0 + 0 ENSG00000198967.4 protein_coding OR10Z1 2 OTTHUMG00000019637.3 +9606 chr1 HAVANA gene 158610706 158686715 10106.0 - 0 ENSG00000163554.13 protein_coding SPTA1 2 OTTHUMG00000019636.7 +9607 chr1 HAVANA gene 158694539 158695509 971.0 - 0 ENSG00000231237.1 unprocessed_pseudogene OR6K1P 2 OTTHUMG00000022773.1 +9608 chr1 HAVANA gene 158699678 158700652 975.0 - 0 ENSG00000196171.3 protein_coding OR6K2 2 OTTHUMG00000022768.2 +9609 chr1 HAVANA gene 158716327 158720720 1875.0 - 0 ENSG00000203757.2 protein_coding OR6K3 2 OTTHUMG00000022770.3 +9610 chr1 HAVANA gene 158724113 158725067 955.0 - 0 ENSG00000180437.5 unprocessed_pseudogene OR6K4P 2 OTTHUMG00000022777.1 +9611 chr1 HAVANA gene 158742146 158743415 945.0 - 0 ENSG00000226949.1 unprocessed_pseudogene OR6K5P 2 OTTHUMG00000022778.1 +9612 chr1 HAVANA gene 158754720 158755891 1172.0 + 0 ENSG00000180433.5 protein_coding OR6K6 2 OTTHUMG00000022772.3 +9613 chr1 HAVANA gene 158747814 158772195 2728.0 - 0 ENSG00000197403.4 protein_coding OR6N1 2 OTTHUMG00000022774.3 +9614 chr1 HAVANA gene 158774222 158781204 3455.0 - 0 ENSG00000188340.2 protein_coding OR6N2 2 OTTHUMG00000022775.3 +9615 chr1 HAVANA gene 158796014 158796213 200.0 + 0 ENSG00000229724.1 unprocessed_pseudogene OR2AQ1P 2 OTTHUMG00000022769.1 +9616 chr1 HAVANA gene 158808399 158809335 937.0 - 0 ENSG00000180409.3 unprocessed_pseudogene OR10AA1P 2 OTTHUMG00000022779.1 +9617 chr1 HAVANA gene 158831317 158849506 2059.0 + 0 ENSG00000163563.7 protein_coding MNDA 2 OTTHUMG00000022776.1 +9618 chr1 HAVANA gene 158878746 158883500 723.0 + 0 ENSG00000229849.1 unprocessed_pseudogene PYHIN5P 2 OTTHUMG00000022771.2 +9619 chr1 HAVANA gene 158930796 158977054 3479.0 + 0 ENSG00000163564.14 protein_coding PYHIN1 2 OTTHUMG00000037109.2 +9620 chr1 HAVANA gene 158999968 159055155 5294.0 + 0 ENSG00000163565.18 protein_coding IFI16 2 OTTHUMG00000037108.6 +9621 chr1 HAVANA gene 159081133 159081795 663.0 - 0 ENSG00000233473.2 processed_pseudogene RAD1P2 2 OTTHUMG00000037180.2 overlapping_locus +9622 chr1 HAVANA gene 159062484 159147096 2009.0 - 0 ENSG00000163568.14 protein_coding AIM2 2 OTTHUMG00000037183.4 overlapping_locus +9623 chr1 ENSEMBL gene 159178473 159178559 87.0 + 0 ENSG00000222552.1 rRNA_pseudogene RNA5SP60 3 +9624 chr1 HAVANA gene 159171609 159203313 3847.0 + 0 ENSG00000162706.12 protein_coding CADM3 2 OTTHUMG00000037177.2 +9625 chr1 HAVANA gene 159203307 159206500 2374.0 + 0 ENSG00000213088.10 protein_coding ACKR1 2 OTTHUMG00000037182.5 +9626 chr1 HAVANA gene 159194325 159207973 5208.0 - 0 ENSG00000225670.4 antisense CADM3-AS1 2 OTTHUMG00000037178.4 +9627 chr1 HAVANA gene 159276503 159277111 609.0 + 0 ENSG00000215846.6 processed_pseudogene MPTX1 2 OTTHUMG00000037179.1 +9628 chr1 HAVANA gene 159279041 159280001 961.0 - 0 ENSG00000248642.1 unprocessed_pseudogene OR10J2P 2 OTTHUMG00000037175.1 +9629 chr1 HAVANA gene 159289714 159308224 1165.0 + 0 ENSG00000179639.10 protein_coding FCER1A 2 OTTHUMG00000037176.2 +9630 chr1 HAVANA gene 159313670 159314659 990.0 - 0 ENSG00000196266.5 polymorphic_pseudogene OR10J3 2 OTTHUMG00000037233.3 +9631 chr1 HAVANA gene 159351093 159352026 934.0 + 0 ENSG00000248442.2 unitary_pseudogene OR10J7P 2 OTTHUMG00000037231.2 +9632 chr1 HAVANA gene 159366161 159367089 929.0 + 0 ENSG00000251686.1 unprocessed_pseudogene OR10J8P 2 OTTHUMG00000037229.1 +9633 chr1 HAVANA gene 159405423 159406409 987.0 - 0 ENSG00000249197.1 unprocessed_pseudogene OR10J9P 2 OTTHUMG00000037232.1 +9634 chr1 HAVANA gene 159432204 159433138 935.0 + 0 ENSG00000249730.1 polymorphic_pseudogene OR10J4 2 OTTHUMG00000022740.3 +9635 chr1 HAVANA gene 159437845 159443078 3557.0 + 0 ENSG00000196184.9 protein_coding OR10J1 2 OTTHUMG00000022737.7 +9636 chr1 HAVANA gene 159346166 159469068 1063.0 - 0 ENSG00000228560.1 antisense AL513323.1 2 OTTHUMG00000037230.1 overlapping_locus +9637 chr1 HAVANA gene 159466321 159483376 853.0 + 0 ENSG00000224943.1 lincRNA AL663023.1 2 OTTHUMG00000022736.1 +9638 chr1 HAVANA gene 159535078 159536007 930.0 - 0 ENSG00000184155.8 protein_coding OR10J5 2 OTTHUMG00000022738.2 +9639 chr1 HAVANA gene 159557368 159558200 666.0 + 0 ENSG00000231100.1 unprocessed_pseudogene AL606752.1 2 OTTHUMG00000022739.1 +9640 chr1 HAVANA gene 159581620 159582648 1029.0 - 0 ENSG00000271890.1 unprocessed_pseudogene OR10AE1P 2 OTTHUMG00000185685.1 +9641 chr1 HAVANA gene 159587825 159588865 926.0 + 0 ENSG00000132703.3 protein_coding APCS 2 OTTHUMG00000022741.2 +9642 chr1 HAVANA gene 159598298 159599227 930.0 + 0 ENSG00000158731.2 unprocessed_pseudogene OR10J6P 2 OTTHUMG00000035346.1 +9643 chr1 HAVANA gene 159649151 159649620 470.0 + 0 ENSG00000276632.1 processed_pseudogene AL445528.2 2 OTTHUMG00000187537.1 +9644 chr1 HAVANA gene 159704983 159705607 625.0 - 0 ENSG00000223603.1 unprocessed_pseudogene CRPP1 2 OTTHUMG00000035345.1 +9645 chr1 HAVANA gene 159712289 159714589 2015.0 - 0 ENSG00000132693.12 protein_coding CRP 2 OTTHUMG00000035344.1 +9646 chr1 HAVANA gene 159759170 159759589 420.0 + 0 ENSG00000235226.1 processed_pseudogene AL445528.1 1 OTTHUMG00000035347.1 pseudo_consens +9647 chr1 HAVANA gene 159780932 159782543 825.0 + 0 ENSG00000158716.8 protein_coding DUSP23 2 OTTHUMG00000022795.2 +9648 chr1 HAVANA gene 159800511 159816251 2671.0 + 0 ENSG00000181036.13 protein_coding FCRL6 2 OTTHUMG00000035351.5 +9649 chr1 HAVANA gene 159826750 159837249 2996.0 + 0 ENSG00000158714.10 protein_coding SLAMF8 2 OTTHUMG00000035433.1 +9650 chr1 ENSEMBL gene 159851906 159851972 67.0 - 0 ENSG00000212161.1 snoRNA RF00570 3 +9651 chr1 HAVANA gene 159834495 159855237 2242.0 - 0 ENSG00000188004.10 lincRNA SNHG28 1 OTTHUMG00000035430.2 ncRNA_host,overlapping_locus +9652 chr1 HAVANA gene 159854316 159862657 1818.0 - 0 ENSG00000243284.1 protein_coding VSIG8 2 OTTHUMG00000168834.18 overlapping_locus +9653 chr1 HAVANA gene 159854870 159867685 7134.0 + 0 ENSG00000272668.2 antisense AL590560.1 2 OTTHUMG00000192504.1 +9654 chr1 HAVANA gene 159834474 159873053 8100.0 - 0 ENSG00000256029.6 protein_coding SNHG28 2 OTTHUMG00000035431.19 ncRNA_host,overlapping_locus +9655 chr1 ENSEMBL gene 159899979 159900079 101.0 - 0 ENSG00000266458.1 miRNA MIR4259 3 +9656 chr1 HAVANA gene 159872364 159900163 2625.0 - 0 ENSG00000213085.9 protein_coding CFAP45 2 OTTHUMG00000035432.4 ncRNA_host,overlapping_locus +9657 chr1 HAVANA gene 159910094 159910554 461.0 - 0 ENSG00000279430.1 TEC AL590560.2 2 OTTHUMG00000187068.1 +9658 chr1 HAVANA gene 159918107 159925732 2487.0 - 0 ENSG00000158710.14 protein_coding TAGLN2 2 OTTHUMG00000022793.3 +9659 chr1 HAVANA gene 159927039 159945604 6628.0 - 0 ENSG00000085552.16 protein_coding IGSF9 2 OTTHUMG00000022794.2 +9660 chr1 HAVANA gene 159951492 159954254 1156.0 - 0 ENSG00000162723.9 protein_coding SLAMF9 2 OTTHUMG00000024074.1 +9661 chr1 HAVANA gene 159972548 159974064 845.0 - 0 ENSG00000273933.1 unprocessed_pseudogene AL513485.1 2 OTTHUMG00000187538.1 +9662 chr1 HAVANA gene 159961218 159984750 3155.0 + 0 ENSG00000224259.6 lincRNA LINC01133 2 OTTHUMG00000024077.2 +9663 chr1 HAVANA gene 160020300 160020727 428.0 + 0 ENSG00000237409.2 processed_pseudogene AL513302.1 1 OTTHUMG00000024078.2 pseudo_consens +9664 chr1 HAVANA gene 160024953 160031991 7039.0 - 0 ENSG00000143315.7 protein_coding PIGM 2 OTTHUMG00000024081.3 overlapping_locus +9665 chr1 HAVANA gene 159998651 160070483 6575.0 - 0 ENSG00000177807.9 protein_coding KCNJ10 2 OTTHUMG00000024073.5 overlapping_locus +9666 chr1 HAVANA gene 160062488 160079821 645.0 + 0 ENSG00000225279.1 antisense AL121987.1 2 OTTHUMG00000024076.1 +9667 chr1 HAVANA gene 160081570 160090563 4170.0 + 0 ENSG00000162728.4 protein_coding KCNJ9 2 OTTHUMG00000024072.1 +9668 chr1 HAVANA gene 160091340 160098943 2592.0 - 0 ENSG00000162729.13 protein_coding IGSF8 2 OTTHUMG00000024075.5 +9669 chr1 HAVANA gene 160115759 160143591 6298.0 + 0 ENSG00000018625.14 protein_coding ATP1A2 2 OTTHUMG00000024080.3 +9670 chr1 HAVANA gene 160151570 160186977 6284.0 + 0 ENSG00000132681.16 protein_coding ATP1A4 2 OTTHUMG00000031609.2 +9671 chr1 HAVANA gene 160190556 160201886 2176.0 + 0 ENSG00000143318.12 protein_coding CASQ1 2 OTTHUMG00000031607.4 +9672 chr1 HAVANA gene 160202199 160208869 1578.0 - 0 ENSG00000227741.1 antisense AL121987.2 2 OTTHUMG00000031606.1 +9673 chr1 HAVANA gene 160205337 160215376 2806.0 + 0 ENSG00000162734.12 protein_coding PEA15 2 OTTHUMG00000031605.1 +9674 chr1 HAVANA gene 160215715 160262531 7587.0 - 0 ENSG00000132716.18 protein_coding DCAF8 2 OTTHUMG00000031604.9 overlapping_locus +9675 chr1 HAVANA gene 160261744 160262778 557.0 + 0 ENSG00000228606.2 antisense AL139011.1 2 OTTHUMG00000033109.2 +9676 chr1 HAVANA gene 160266340 160267225 886.0 - 0 ENSG00000224261.2 processed_pseudogene RPSAP18 1 OTTHUMG00000031608.2 pseudo_consens,overlapping_locus +9677 chr1 HAVANA gene 160216800 160285130 3202.0 - 0 ENSG00000258465.7 protein_coding AL139011.2 1 OTTHUMG00000171815.3 overlapping_locus +9678 chr1 HAVANA gene 160276812 160286348 4461.0 - 0 ENSG00000162735.18 protein_coding PEX19 2 OTTHUMG00000033112.4 overlapping_locus +9679 chr1 HAVANA gene 160317403 160317706 304.0 + 0 ENSG00000235082.2 processed_pseudogene SUMO1P3 2 OTTHUMG00000033120.2 +9680 chr1 ENSEMBL gene 160326104 160326216 113.0 - 0 ENSG00000202078.1 misc_RNA RF00019 3 +9681 chr1 HAVANA gene 160288686 160343400 7723.0 - 0 ENSG00000122218.15 protein_coding COPA 2 OTTHUMG00000033111.8 ncRNA_host +9682 chr1 HAVANA gene 160343272 160358952 4175.0 + 0 ENSG00000162736.16 protein_coding NCSTN 2 OTTHUMG00000033110.5 +9683 chr1 HAVANA gene 160367067 160372848 2563.0 + 0 ENSG00000171786.5 protein_coding NHLH1 2 OTTHUMG00000033121.1 +9684 chr1 ENSEMBL gene 160392768 160392909 142.0 - 0 ENSG00000201608.1 snRNA RNU4-42P 3 +9685 chr1 HAVANA gene 160400586 160428678 5340.0 + 0 ENSG00000162738.5 protein_coding VANGL2 2 OTTHUMG00000033122.1 +9686 chr1 HAVANA gene 160485030 160523262 2746.0 - 0 ENSG00000162739.13 protein_coding SLAMF6 2 OTTHUMG00000022729.1 +9687 chr1 HAVANA gene 160537073 160571458 635.0 + 0 ENSG00000234425.1 antisense AL138930.1 2 OTTHUMG00000022789.1 +9688 chr1 HAVANA gene 160541095 160579516 9255.0 - 0 ENSG00000066294.14 protein_coding CD84 2 OTTHUMG00000022788.2 +9689 chr1 HAVANA gene 160608100 160647295 4269.0 - 0 ENSG00000117090.14 protein_coding SLAMF1 2 OTTHUMG00000024006.1 +9690 chr1 HAVANA gene 160670148 160670979 832.0 + 0 ENSG00000235101.1 transcribed_processed_pseudogene SETP9 1 OTTHUMG00000024004.1 pseudo_consens,overlapping_locus +9691 chr1 HAVANA gene 160670778 160699761 4121.0 + 0 ENSG00000228863.8 antisense AL121985.1 1 OTTHUMG00000024005.10 overlapping_locus +9692 chr1 HAVANA gene 160678746 160711851 3274.0 - 0 ENSG00000117091.9 protein_coding CD48 2 OTTHUMG00000024009.2 +9693 chr1 HAVANA gene 160739057 160754821 4833.0 + 0 ENSG00000026751.16 protein_coding SLAMF7 2 OTTHUMG00000024008.4 +9694 chr1 HAVANA gene 160775954 160776608 523.0 - 0 ENSG00000275801.1 unprocessed_pseudogene AL121985.3 2 OTTHUMG00000187539.1 +9695 chr1 HAVANA gene 160776975 160780140 555.0 - 0 ENSG00000274562.1 unprocessed_pseudogene AL121985.2 2 OTTHUMG00000187540.1 +9696 chr1 HAVANA gene 160796074 160828261 9118.0 + 0 ENSG00000122224.17 protein_coding LY9 2 OTTHUMG00000024007.6 +9697 chr1 HAVANA gene 160848010 160848502 493.0 + 0 ENSG00000226003.2 processed_pseudogene PPIAP37 1 OTTHUMG00000028598.2 pseudo_consens +9698 chr1 HAVANA gene 160830160 160862855 2857.0 - 0 ENSG00000122223.12 protein_coding CD244 2 OTTHUMG00000028606.3 +9699 chr1 HAVANA gene 160876539 160885170 1483.0 - 0 ENSG00000179914.4 protein_coding ITLN1 2 OTTHUMG00000028604.2 +9700 chr1 HAVANA gene 160894980 160896076 1097.0 + 0 ENSG00000213080.3 processed_pseudogene AL354714.2 1 OTTHUMG00000028599.1 pseudo_consens +9701 chr1 HAVANA gene 160931739 160934380 575.0 - 0 ENSG00000232188.1 lincRNA AL354714.3 1 OTTHUMG00000028600.1 +9702 chr1 HAVANA gene 160935537 160936126 590.0 + 0 ENSG00000233691.2 processed_pseudogene AL354714.4 1 OTTHUMG00000028601.2 pseudo_consens,overlapping_locus +9703 chr1 HAVANA gene 160932465 160949922 2136.0 + 0 ENSG00000198358.4 antisense AL354714.1 2 OTTHUMG00000028603.1 overlapping_locus +9704 chr1 HAVANA gene 160945025 160954799 1636.0 - 0 ENSG00000158764.6 protein_coding ITLN2 2 OTTHUMG00000028605.1 +9705 chr1 HAVANA gene 160995211 161021348 5066.0 - 0 ENSG00000158769.17 protein_coding F11R 1 OTTHUMG00000028602.3 overlapping_locus +9706 chr1 HAVANA gene 161034834 161035006 173.0 + 0 ENSG00000232879.2 processed_pseudogene AL591806.2 2 OTTHUMG00000031474.2 +9707 chr1 HAVANA gene 160997957 161038962 2114.0 - 0 ENSG00000270149.5 protein_coding AL591806.3 2 OTTHUMG00000183896.1 overlapping_locus +9708 chr1 HAVANA gene 161037631 161038990 1210.0 - 0 ENSG00000215845.10 protein_coding TSTD1 2 OTTHUMG00000031476.3 overlapping_locus +9709 chr1 HAVANA gene 161039251 161045977 2336.0 - 0 ENSG00000158773.14 protein_coding USF1 1 OTTHUMG00000031472.3 +9710 chr1 HAVANA gene 161046946 161069970 5064.0 - 0 ENSG00000186517.13 protein_coding ARHGAP30 2 OTTHUMG00000031477.3 +9711 chr1 HAVANA gene 161084465 161087571 1109.0 + 0 ENSG00000228917.1 antisense AL591806.1 2 OTTHUMG00000031478.1 +9712 chr1 HAVANA gene 161070995 161089599 3502.0 - 0 ENSG00000143217.8 protein_coding NECTIN4 2 OTTHUMG00000031475.1 +9713 chr1 HAVANA gene 161098361 161100346 1720.0 + 0 ENSG00000162755.13 protein_coding KLHDC9 2 OTTHUMG00000031479.2 +9714 chr1 HAVANA gene 161100556 161118111 677.0 - 0 ENSG00000143256.4 protein_coding PFDN2 2 OTTHUMG00000031481.1 +9715 chr1 HAVANA gene 161118086 161125445 3793.0 + 0 ENSG00000158793.13 protein_coding NIT1 2 OTTHUMG00000031473.2 +9716 chr1 HAVANA gene 161120974 161132688 2821.0 - 0 ENSG00000158796.16 protein_coding DEDD 2 OTTHUMG00000033104.6 +9717 chr1 ENSEMBL gene 161141208 161141336 129.0 - 0 ENSG00000238934.1 snoRNA RF01225 3 +9718 chr1 HAVANA gene 161152776 161158856 2274.0 + 0 ENSG00000143222.11 protein_coding UFC1 2 OTTHUMG00000033155.1 +9719 chr1 HAVANA gene 161153760 161159349 379.0 - 0 ENSG00000224985.1 antisense AL590714.1 2 OTTHUMG00000033156.1 +9720 chr1 HAVANA gene 161159450 161165723 3764.0 + 0 ENSG00000143258.15 protein_coding USP21 2 OTTHUMG00000033154.5 +9721 chr1 HAVANA gene 161171310 161177968 3890.0 - 0 ENSG00000158850.14 protein_coding B4GALT3 2 OTTHUMG00000034348.1 +9722 chr1 HAVANA gene 161166410 161178013 4607.0 + 0 ENSG00000143224.17 protein_coding PPOX 1 OTTHUMG00000034342.3 +9723 chr1 HAVANA gene 161184308 161199056 10334.0 - 0 ENSG00000158859.9 protein_coding ADAMTS4 2 OTTHUMG00000034349.2 +9724 chr1 HAVANA gene 161197104 161214395 3658.0 + 0 ENSG00000158864.12 protein_coding NDUFS2 2 OTTHUMG00000034344.1 +9725 chr1 HAVANA gene 161215234 161220699 964.0 + 0 ENSG00000158869.10 protein_coding FCER1G 2 OTTHUMG00000034343.1 +9726 chr1 HAVANA gene 161222292 161223631 945.0 - 0 ENSG00000158874.11 protein_coding APOA2 2 OTTHUMG00000034346.3 +9727 chr1 ENSEMBL gene 161227186 161227261 76.0 + 0 ENSG00000284035.1 miRNA MIR5187 3 +9728 chr1 HAVANA gene 161225939 161230744 3289.0 + 0 ENSG00000158882.14 protein_coding TOMM40L 2 OTTHUMG00000034345.1 ncRNA_host +9729 chr1 HAVANA gene 161229666 161238302 3305.0 - 0 ENSG00000143257.11 protein_coding NR1I3 1 OTTHUMG00000034347.3 +9730 chr1 HAVANA gene 161258727 161285450 1424.0 + 0 ENSG00000248485.1 protein_coding PCP4L1 2 OTTHUMG00000034340.2 +9731 chr1 HAVANA gene 161304735 161309972 2154.0 - 0 ENSG00000158887.15 protein_coding MPZ 2 OTTHUMG00000034341.4 +9732 chr1 HAVANA gene 161364731 161367874 774.0 - 0 ENSG00000188931.3 protein_coding CFAP126 2 OTTHUMG00000034462.1 +9733 chr1 HAVANA gene 161314257 161375340 14160.0 + 0 ENSG00000143252.14 protein_coding SDHC 2 OTTHUMG00000034468.5 +9734 chr1 HAVANA gene 161378707 161379358 652.0 - 0 ENSG00000236484.2 processed_pseudogene RRM2P2 1 OTTHUMG00000034464.1 pseudo_consens +9735 chr1 ENSEMBL gene 161401289 161401395 107.0 + 0 ENSG00000206921.1 snRNA RNU6-481P 3 +9736 chr1 HAVANA gene 161406068 161407082 884.0 + 0 ENSG00000215840.3 processed_pseudogene AL592295.1 1 OTTHUMG00000034465.1 pseudo_consens +9737 chr1 HAVANA gene 161411597 161411802 206.0 - 0 ENSG00000277882.1 processed_pseudogene AL592295.2 2 OTTHUMG00000187542.1 +9738 chr1 HAVANA gene 161399409 161422424 997.0 + 0 ENSG00000283696.1 lincRNA AL592295.4 2 OTTHUMG00000191708.1 ncRNA_host +9739 chr1 HAVANA gene 161433444 161440996 569.0 - 0 ENSG00000283317.1 lincRNA AL831711.1 2 OTTHUMG00000191710.1 +9740 chr1 HAVANA gene 161403409 161470523 863.0 - 0 ENSG00000283360.1 lincRNA AL592295.3 2 OTTHUMG00000191709.1 +9741 chr1 HAVANA gene 161505430 161524013 5314.0 + 0 ENSG00000143226.13 protein_coding FCGR2A 2 OTTHUMG00000034469.8 overlapping_locus +9742 chr1 HAVANA gene 161524540 161526910 2371.0 + 0 ENSG00000173110.7 protein_coding HSPA6 2 OTTHUMG00000034461.1 retrogene +9743 chr1 HAVANA gene 161536571 161538158 486.0 - 0 ENSG00000224203.2 unprocessed_pseudogene RPS23P10 1 OTTHUMG00000034471.2 pseudo_consens +9744 chr1 HAVANA gene 161541759 161550737 2958.0 - 0 ENSG00000203747.10 protein_coding FCGR3A 2 OTTHUMG00000034466.7 +9745 chr1 HAVANA gene 161556290 161557078 462.0 - 0 ENSG00000224515.1 antisense AL590385.1 2 OTTHUMG00000043773.1 +9746 chr1 HAVANA gene 161513176 161605099 553.0 + 0 ENSG00000273112.1 processed_transcript AL590385.2 2 OTTHUMG00000185955.1 overlapping_locus +9747 chr1 HAVANA gene 161581339 161605662 3580.0 + 0 ENSG00000244682.7 polymorphic_pseudogene FCGR2C 2 OTTHUMG00000074101.5 overlapping_locus +9748 chr1 HAVANA gene 161606291 161608217 1927.0 + 0 ENSG00000225217.1 unprocessed_pseudogene HSPA7 1 OTTHUMG00000074098.2 pseudo_consens +9749 chr1 HAVANA gene 161617992 161619585 438.0 - 0 ENSG00000231586.2 unprocessed_pseudogene RPS23P9 1 OTTHUMG00000074097.2 pseudo_consens +9750 chr1 HAVANA gene 161623196 161631963 3073.0 - 0 ENSG00000162747.10 protein_coding FCGR3B 2 OTTHUMG00000074099.4 +9751 chr1 HAVANA gene 161671978 161674824 1015.0 - 0 ENSG00000234211.2 antisense AL451067.1 2 OTTHUMG00000074100.2 +9752 chr1 HAVANA gene 161663147 161678654 6651.0 + 0 ENSG00000072694.20 protein_coding FCGR2B 2 OTTHUMG00000034470.6 +9753 chr1 HAVANA gene 161683695 161685252 1558.0 - 0 ENSG00000213075.7 transcribed_processed_pseudogene RPL31P11 1 OTTHUMG00000034536.4 pseudo_consens +9754 chr1 ENSEMBL gene 161699506 161699607 102.0 + 0 ENSG00000199595.1 misc_RNA RF00019 3 +9755 chr1 HAVANA gene 161706972 161714352 3275.0 + 0 ENSG00000132185.16 protein_coding FCRLA 2 OTTHUMG00000034537.1 +9756 chr1 HAVANA gene 161721563 161728143 2592.0 + 0 ENSG00000162746.14 protein_coding FCRLB 2 OTTHUMG00000133629.1 +9757 chr1 ENSEMBL gene 161735808 161736102 295.0 + 0 ENSG00000241347.3 misc_RNA RN7SL466P 3 +9758 chr1 HAVANA gene 161749758 161757238 1762.0 + 0 ENSG00000081721.11 protein_coding DUSP12 2 OTTHUMG00000034540.2 +9759 chr1 HAVANA gene 161765325 161766227 575.0 - 0 ENSG00000226889.3 antisense AL359541.1 2 OTTHUMG00000034539.2 +9760 chr1 HAVANA gene 161890833 161892196 1364.0 + 0 ENSG00000229808.1 transcribed_processed_pseudogene AL391825.1 1 OTTHUMG00000024019.3 pseudo_consens,overlapping_locus +9761 chr1 HAVANA gene 161766294 161964070 7890.0 + 0 ENSG00000118217.5 protein_coding ATF6 2 OTTHUMG00000023961.2 overlapping_locus +9762 chr1 HAVANA gene 161983192 162023854 3415.0 - 0 ENSG00000162745.10 protein_coding OLFML2B 1 OTTHUMG00000024047.2 +9763 chr1 HAVANA gene 162039016 162039567 453.0 + 0 ENSG00000227818.1 lincRNA AL590408.1 2 OTTHUMG00000024048.1 +9764 chr1 ENSEMBL gene 162157107 162157182 76.0 + 0 ENSG00000266144.1 miRNA MIR4654 3 +9765 chr1 HAVANA gene 162146709 162174860 1448.0 - 0 ENSG00000285636.1 antisense AL450163.1 2 OTTHUMG00000193270.2 +9766 chr1 HAVANA gene 162316852 162317794 517.0 - 0 ENSG00000227094.1 antisense AL512785.1 2 OTTHUMG00000031374.1 +9767 chr1 ENSEMBL gene 162338643 162338742 100.0 + 0 ENSG00000252262.1 rRNA_pseudogene RNA5SP61 3 +9768 chr1 ENSEMBL gene 162342546 162342640 95.0 + 0 ENSG00000207729.3 miRNA MIR556 3 +9769 chr1 HAVANA gene 162069774 162370475 7771.0 + 0 ENSG00000198929.12 protein_coding NOS1AP 2 OTTHUMG00000024049.6 ncRNA_host,overlapping_locus +9770 chr1 HAVANA gene 162373203 162376870 1864.0 - 0 ENSG00000171722.12 protein_coding SPATA46 2 OTTHUMG00000031375.2 +9771 chr1 HAVANA gene 162365407 162383531 1146.0 + 0 ENSG00000254706.2 protein_coding AL512785.2 2 OTTHUMG00000165223.3 overlapping_locus +9772 chr1 HAVANA gene 162366908 162386818 4495.0 + 0 ENSG00000239887.4 protein_coding C1orf226 2 OTTHUMG00000031376.4 overlapping_locus +9773 chr1 HAVANA gene 162395266 162412138 2797.0 - 0 ENSG00000198574.5 protein_coding SH2D1B 2 OTTHUMG00000031377.1 +9774 chr1 HAVANA gene 162445549 162446566 602.0 + 0 ENSG00000227243.3 unprocessed_pseudogene SLAMF6P1 2 OTTHUMG00000031372.2 +9775 chr1 HAVANA gene 162497251 162529629 9246.0 + 0 ENSG00000152332.15 protein_coding UHMK1 2 OTTHUMG00000031373.1 +9776 chr1 HAVANA gene 162541332 162541628 297.0 - 0 ENSG00000227941.1 processed_pseudogene UQCRBP2 1 OTTHUMG00000034418.1 pseudo_consens +9777 chr1 HAVANA gene 162560227 162561308 1082.0 - 0 ENSG00000259788.1 antisense AL596325.1 2 OTTHUMG00000176119.1 +9778 chr1 HAVANA gene 162593103 162593754 505.0 + 0 ENSG00000272574.1 sense_intronic AL596325.2 2 OTTHUMG00000185962.1 overlapping_locus +9779 chr1 HAVANA gene 162561506 162599842 3437.0 + 0 ENSG00000117143.13 protein_coding UAP1 2 OTTHUMG00000034419.4 overlapping_locus +9780 chr1 ENSEMBL gene 162777730 162778014 285.0 + 0 ENSG00000243173.3 misc_RNA RN7SL861P 3 +9781 chr1 HAVANA gene 162631373 162787400 10730.0 + 0 ENSG00000162733.17 protein_coding DDR2 2 OTTHUMG00000034423.7 ncRNA_host +9782 chr1 HAVANA gene 162790702 162812817 4124.0 + 0 ENSG00000132196.14 protein_coding HSD17B7 2 OTTHUMG00000034420.8 +9783 chr1 HAVANA gene 162824795 162849467 679.0 + 0 ENSG00000230739.1 unprocessed_pseudogene AL392003.2 2 OTTHUMG00000128965.1 +9784 chr1 HAVANA gene 162824458 162868815 4316.0 - 0 ENSG00000185860.13 protein_coding CCDC190 2 OTTHUMG00000034421.3 +9785 chr1 HAVANA gene 162979551 162979793 243.0 - 0 ENSG00000227667.1 processed_pseudogene AL392003.1 1 OTTHUMG00000034422.1 pseudo_consens +9786 chr1 HAVANA gene 163068775 163076802 4836.0 + 0 ENSG00000117152.13 protein_coding RGS4 2 OTTHUMG00000034417.5 +9787 chr1 HAVANA gene 163161675 163213023 2633.0 + 0 ENSG00000232892.1 antisense AL499616.1 2 OTTHUMG00000033126.1 +9788 chr1 HAVANA gene 163237214 163239197 1133.0 + 0 ENSG00000225755.2 processed_pseudogene AL451063.1 1 OTTHUMG00000033128.2 pseudo_consens +9789 chr1 HAVANA gene 163259850 163260659 469.0 + 0 ENSG00000237756.1 lincRNA AL592435.1 2 OTTHUMG00000033149.1 +9790 chr1 HAVANA gene 163111121 163321791 6821.0 - 0 ENSG00000143248.12 protein_coding RGS5 1 OTTHUMG00000034441.5 overlapping_locus +9791 chr1 HAVANA gene 163244505 163321894 3626.0 - 0 ENSG00000232995.7 antisense RGS5 1 OTTHUMG00000033150.2 overlapping_locus +9792 chr1 HAVANA gene 163266576 163355764 3362.0 + 0 ENSG00000143228.12 protein_coding NUF2 1 OTTHUMG00000034275.3 +9793 chr1 HAVANA gene 163422405 163423164 664.0 - 0 ENSG00000225122.1 unprocessed_pseudogene AL603841.1 1 OTTHUMG00000034281.1 pseudo_consens +9794 chr1 ENSEMBL gene 163468496 163468605 110.0 - 0 ENSG00000200327.1 rRNA_pseudogene RNA5SP62 3 +9795 chr1 ENSEMBL gene 163509484 163509595 112.0 + 0 ENSG00000212527.1 rRNA_pseudogene RNA5SP63 3 +9796 chr1 HAVANA gene 163769339 163769691 353.0 - 0 ENSG00000228289.1 processed_pseudogene AL355862.1 1 OTTHUMG00000033216.1 pseudo_consens +9797 chr1 ENSEMBL gene 163923670 163923873 204.0 + 0 ENSG00000212538.2 snoRNA RF00012 3 +9798 chr1 HAVANA gene 164343005 164343864 860.0 + 0 ENSG00000225719.2 processed_pseudogene NMNAT1P2 1 OTTHUMG00000034278.2 pseudo_consens +9799 chr1 ENSEMBL gene 164351273 164351388 116.0 + 0 ENSG00000199849.1 snRNA RNU5F-6P 3 +9800 chr1 HAVANA gene 164356767 164357364 598.0 + 0 ENSG00000213070.3 processed_pseudogene HMGB3P6 1 OTTHUMG00000034279.3 pseudo_consens +9801 chr1 ENSEMBL gene 164639565 164639671 107.0 + 0 ENSG00000207082.1 snRNA RNU6-171P 3 +9802 chr1 HAVANA gene 164680085 164680799 715.0 + 0 ENSG00000269887.1 sense_intronic AL391001.1 2 OTTHUMG00000184145.1 overlapping_locus +9803 chr1 ENSEMBL gene 164703026 164703309 284.0 - 0 ENSG00000276359.1 misc_RNA RF00017 3 +9804 chr1 HAVANA gene 164769116 164774641 1963.0 - 0 ENSG00000233693.1 antisense AL357568.1 2 OTTHUMG00000034481.1 +9805 chr1 HAVANA gene 164828436 164829952 1517.0 + 0 ENSG00000271917.1 sense_intronic AL357568.2 2 OTTHUMG00000185515.1 overlapping_locus +9806 chr1 ENSEMBL gene 164854231 164854332 102.0 + 0 ENSG00000201987.1 misc_RNA RF00019 3 +9807 chr1 HAVANA gene 164555584 164899296 21249.0 + 0 ENSG00000185630.18 protein_coding PBX1 1 OTTHUMG00000034307.13 ncRNA_host,overlapping_locus +9808 chr1 HAVANA gene 164921318 164921629 312.0 - 0 ENSG00000225487.2 processed_pseudogene AL390119.1 1 OTTHUMG00000034480.2 pseudo_consens +9809 chr1 ENSEMBL gene 164980035 164980137 103.0 - 0 ENSG00000201270.1 snRNA RNU6-755P 3 +9810 chr1 HAVANA gene 165210627 165213090 692.0 + 0 ENSG00000224702.1 antisense AL390730.1 1 OTTHUMG00000040114.1 +9811 chr1 HAVANA gene 165215980 165219104 756.0 + 0 ENSG00000238022.1 antisense AL390730.2 1 OTTHUMG00000040115.1 +9812 chr1 HAVANA gene 165201867 165356715 4185.0 - 0 ENSG00000162761.14 protein_coding LMX1A 2 OTTHUMG00000034575.3 +9813 chr1 HAVANA gene 165400917 165445355 2696.0 - 0 ENSG00000143171.12 protein_coding RXRG 2 OTTHUMG00000034626.4 +9814 chr1 HAVANA gene 165497724 165498348 625.0 + 0 ENSG00000230748.1 processed_pseudogene AL157714.1 1 OTTHUMG00000034623.2 pseudo_consens +9815 chr1 HAVANA gene 165544007 165563961 1369.0 + 0 ENSG00000162763.3 protein_coding LRRC52 2 OTTHUMG00000034625.1 +9816 chr1 HAVANA gene 165476841 165582155 4036.0 - 0 ENSG00000237463.5 antisense AL157714.2 2 OTTHUMG00000034624.2 +9817 chr1 HAVANA gene 165581613 165582476 864.0 + 0 ENSG00000237783.2 processed_pseudogene AL356441.2 1 OTTHUMG00000034565.2 pseudo_consens +9818 chr1 HAVANA gene 165598463 165623331 492.0 + 0 ENSG00000236206.1 lincRNA AL356441.1 2 OTTHUMG00000034564.1 +9819 chr1 HAVANA gene 165630861 165661796 8401.0 + 0 ENSG00000143198.12 protein_coding MGST3 2 OTTHUMG00000034627.6 +9820 chr1 ENSEMBL gene 165662585 165662687 103.0 - 0 ENSG00000206990.1 misc_RNA RF00019 3 +9821 chr1 HAVANA gene 165671256 165671725 470.0 + 0 ENSG00000230175.1 processed_pseudogene AL451074.4 1 OTTHUMG00000034673.1 pseudo_consens +9822 chr1 HAVANA gene 165676310 165676781 472.0 + 0 ENSG00000225272.2 processed_pseudogene AL451074.3 1 OTTHUMG00000034674.2 pseudo_consens +9823 chr1 HAVANA gene 165662216 165698863 3308.0 - 0 ENSG00000143149.12 protein_coding ALDH9A1 2 OTTHUMG00000034677.2 ncRNA_host +9824 chr1 HAVANA gene 165706556 165707284 729.0 - 0 ENSG00000273365.1 lincRNA AL451074.6 2 OTTHUMG00000186434.1 +9825 chr1 HAVANA gene 165698750 165709968 1854.0 + 0 ENSG00000215838.4 transcribed_processed_pseudogene AL451074.1 1 OTTHUMG00000034676.2 pseudo_consens +9826 chr1 HAVANA gene 165768929 165775176 2150.0 + 0 ENSG00000224358.1 antisense AL451074.2 2 OTTHUMG00000034703.1 +9827 chr1 HAVANA gene 165819353 165819787 435.0 + 0 ENSG00000230659.3 processed_pseudogene AL451074.5 1 OTTHUMG00000034704.1 pseudo_consens +9828 chr1 HAVANA gene 165724293 165827755 5584.0 - 0 ENSG00000143183.16 protein_coding TMCO1 1 OTTHUMG00000034672.4 +9829 chr1 HAVANA gene 165890795 165900683 1570.0 - 0 ENSG00000236364.3 antisense AL358115.1 1 OTTHUMG00000040116.3 +9830 chr1 ENSEMBL gene 165907921 165907976 56.0 + 0 ENSG00000283936.1 miRNA MIR3658 3 +9831 chr1 HAVANA gene 165827531 165911618 6756.0 + 0 ENSG00000143179.15 protein_coding UCK2 2 OTTHUMG00000040117.3 ncRNA_host +9832 chr1 HAVANA gene 165941235 165941769 535.0 - 0 ENSG00000271527.1 processed_pseudogene AL606495.2 1 OTTHUMG00000184426.1 pseudo_consens +9833 chr1 HAVANA gene 166022215 166023027 813.0 + 0 ENSG00000226292.1 processed_pseudogene AL606495.1 1 OTTHUMG00000034701.1 pseudo_consens +9834 chr1 ENSEMBL gene 166042244 166042350 107.0 + 0 ENSG00000207341.1 rRNA_pseudogene RNA5SP64 3 +9835 chr1 HAVANA gene 166081183 166087483 594.0 + 0 ENSG00000203307.2 antisense AL626787.1 1 OTTHUMG00000156135.1 +9836 chr1 ENSEMBL gene 166154743 166154798 56.0 - 0 ENSG00000215952.1 miRNA MIR921 3 +9837 chr1 HAVANA gene 166147782 166165095 484.0 - 0 ENSG00000230898.1 sense_intronic AL596087.2 2 OTTHUMG00000156136.1 ncRNA_host,overlapping_locus +9838 chr1 HAVANA gene 166057426 166166969 5343.0 - 0 ENSG00000188859.6 protein_coding FAM78B 2 OTTHUMG00000034705.4 ncRNA_host,overlapping_locus +9839 chr1 HAVANA gene 166275629 166277597 1969.0 - 0 ENSG00000215835.2 processed_pseudogene AL596087.1 1 OTTHUMG00000034702.1 pseudo_consens +9840 chr1 HAVANA gene 166334884 166335762 423.0 + 0 ENSG00000229588.1 lincRNA AL390115.1 1 OTTHUMG00000034556.2 +9841 chr1 HAVANA gene 166387727 166452632 810.0 - 0 ENSG00000225325.1 lincRNA AL583804.1 2 OTTHUMG00000033265.1 +9842 chr1 HAVANA gene 166474745 166481565 768.0 + 0 ENSG00000230231.1 unprocessed_pseudogene FMO7P 2 OTTHUMG00000033266.1 +9843 chr1 HAVANA gene 166475772 166490039 701.0 - 0 ENSG00000234142.1 lincRNA LINC01675 1 OTTHUMG00000033267.1 +9844 chr1 HAVANA gene 166566178 166580705 1600.0 + 0 ENSG00000238087.3 unprocessed_pseudogene FMO8P 2 OTTHUMG00000033268.1 +9845 chr1 HAVANA gene 166603916 166631400 2270.0 + 0 ENSG00000215834.10 transcribed_unprocessed_pseudogene FMO9P 2 OTTHUMG00000078309.3 +9846 chr1 HAVANA gene 166665885 166682196 1493.0 + 0 ENSG00000234984.1 unprocessed_pseudogene FMO10P 2 OTTHUMG00000034323.1 +9847 chr1 HAVANA gene 166747379 166748660 1282.0 + 0 ENSG00000232341.2 processed_pseudogene RPL4P2 1 OTTHUMG00000034324.2 pseudo_consens +9848 chr1 HAVANA gene 166763334 166792767 1370.0 + 0 ENSG00000232148.1 unprocessed_pseudogene FMO11P 1 OTTHUMG00000034317.2 pseudo_consens +9849 chr1 HAVANA gene 166796266 166797183 918.0 + 0 ENSG00000232223.1 processed_pseudogene CNN2P10 1 OTTHUMG00000034318.1 pseudo_consens +9850 chr1 HAVANA gene 166839447 166856344 8448.0 + 0 ENSG00000143157.11 protein_coding POGK 2 OTTHUMG00000034325.2 +9851 chr1 HAVANA gene 166868748 166869209 462.0 + 0 ENSG00000225171.2 processed_pseudogene DUTP6 1 OTTHUMG00000034322.2 pseudo_consens +9852 chr1 HAVANA gene 166856510 166876327 2963.0 - 0 ENSG00000152382.5 protein_coding TADA1 2 OTTHUMG00000034321.1 +9853 chr1 HAVANA gene 166895711 166975482 13884.0 - 0 ENSG00000143195.12 protein_coding ILDR2 1 OTTHUMG00000034320.6 overlapping_locus +9854 chr1 ENSEMBL gene 167005959 167006077 119.0 + 0 ENSG00000200036.1 rRNA_pseudogene RNA5SP65 3 +9855 chr1 HAVANA gene 166975582 167022214 3148.0 + 0 ENSG00000143194.12 protein_coding MAEL 2 OTTHUMG00000034432.2 +9856 chr1 HAVANA gene 167052551 167058542 452.0 + 0 ENSG00000227907.1 antisense AL158837.1 2 OTTHUMG00000034433.1 +9857 chr1 HAVANA gene 167094045 167129165 4304.0 + 0 ENSG00000198842.9 protein_coding DUSP27 2 OTTHUMG00000034434.2 +9858 chr1 HAVANA gene 167162423 167162837 415.0 - 0 ENSG00000213068.3 processed_pseudogene AL451050.1 1 OTTHUMG00000034437.1 pseudo_consens +9859 chr1 HAVANA gene 167052836 167166479 3200.0 - 0 ENSG00000143167.11 protein_coding GPA33 2 OTTHUMG00000034435.5 +9860 chr1 HAVANA gene 167175917 167195792 1375.0 - 0 ENSG00000231605.5 antisense LINC01363 2 OTTHUMG00000034431.1 +9861 chr1 HAVANA gene 167219831 167220512 682.0 - 0 ENSG00000272205.1 lincRNA AL451050.2 2 OTTHUMG00000185307.1 +9862 chr1 HAVANA gene 167379108 167381000 1893.0 + 0 ENSG00000272033.1 sense_intronic AL136984.1 2 OTTHUMG00000185366.1 overlapping_locus +9863 chr1 HAVANA gene 167220829 167427345 15753.0 + 0 ENSG00000143190.22 protein_coding POU2F1 1 OTTHUMG00000034436.11 overlapping_locus +9864 chr1 HAVANA gene 167457383 167458661 303.0 - 0 ENSG00000233411.1 sense_intronic AL359962.1 2 OTTHUMG00000040633.1 overlapping_locus +9865 chr1 HAVANA gene 167457742 167459891 303.0 - 0 ENSG00000273160.1 lincRNA AL359962.2 2 OTTHUMG00000185991.1 overlapping_locus +9866 chr1 HAVANA gene 167430640 167518610 4034.0 - 0 ENSG00000198821.10 protein_coding CD247 2 OTTHUMG00000034593.2 overlapping_locus +9867 chr1 HAVANA gene 167519536 167520586 936.0 + 0 ENSG00000227776.1 processed_pseudogene AKR1D1P1 1 OTTHUMG00000034681.1 pseudo_consens +9868 chr1 HAVANA gene 167529117 167553805 3286.0 - 0 ENSG00000143162.8 protein_coding CREG1 2 OTTHUMG00000034682.3 +9869 chr1 HAVANA gene 167591392 167591846 455.0 + 0 ENSG00000231029.2 processed_pseudogene AL031733.1 1 OTTHUMG00000034683.3 pseudo_consens +9870 chr1 HAVANA gene 167627385 167630674 2523.0 - 0 ENSG00000241666.2 antisense AL031733.2 2 OTTHUMG00000035319.2 +9871 chr1 HAVANA gene 167630093 167706249 5718.0 + 0 ENSG00000198771.10 protein_coding RCSD1 2 OTTHUMG00000035318.2 +9872 chr1 HAVANA gene 167721192 167791919 7069.0 + 0 ENSG00000197965.11 protein_coding MPZL1 1 OTTHUMG00000034571.4 +9873 chr1 HAVANA gene 167819898 167820248 266.0 - 0 ENSG00000250762.1 unprocessed_pseudogene Z99943.2 2 OTTHUMG00000057607.1 overlapping_locus +9874 chr1 HAVANA gene 167820406 167821224 718.0 + 0 ENSG00000232194.1 antisense Z99943.1 2 OTTHUMG00000040771.1 +9875 chr1 HAVANA gene 167809388 167914215 6139.0 - 0 ENSG00000143199.17 protein_coding ADCY10 2 OTTHUMG00000034573.5 overlapping_locus +9876 chr1 HAVANA gene 167916729 167937040 2552.0 - 0 ENSG00000143158.10 protein_coding MPC2 2 OTTHUMG00000034570.3 +9877 chr1 ENSEMBL gene 167998660 167998726 67.0 + 0 ENSG00000221545.1 miRNA MIR1255B2 3 +9878 chr1 HAVANA gene 168055901 168056422 522.0 - 0 ENSG00000224837.1 processed_pseudogene GCSHP5 2 OTTHUMG00000034577.1 +9879 chr1 HAVANA gene 167935783 168075843 6306.0 + 0 ENSG00000143164.15 protein_coding DCAF6 2 OTTHUMG00000034572.6 ncRNA_host +9880 chr1 HAVANA gene 168079543 168137667 11224.0 - 0 ENSG00000143147.14 protein_coding GPR161 1 OTTHUMG00000034651.4 +9881 chr1 HAVANA gene 168178933 168202114 3220.0 + 0 ENSG00000143155.12 protein_coding TIPRL 2 OTTHUMG00000034646.2 +9882 chr1 HAVANA gene 168210616 168210969 354.0 + 0 ENSG00000237049.1 processed_pseudogene RPL34P1 1 OTTHUMG00000034647.1 pseudo_consens +9883 chr1 HAVANA gene 168215405 168215652 248.0 + 0 ENSG00000237131.1 processed_pseudogene AL021397.1 1 OTTHUMG00000034649.1 pseudo_consens +9884 chr1 HAVANA gene 168245565 168247343 1779.0 - 0 ENSG00000214262.4 transcribed_processed_pseudogene ANKRD36BP1 2 OTTHUMG00000040770.2 +9885 chr1 HAVANA gene 168225938 168253025 11221.0 + 0 ENSG00000213064.9 protein_coding SFT2D2 2 OTTHUMG00000034650.3 +9886 chr1 ENSEMBL gene 168263375 168263481 107.0 - 0 ENSG00000206880.1 snRNA RNU6-1310P 3 +9887 chr1 HAVANA gene 168281040 168314426 3647.0 + 0 ENSG00000143178.12 protein_coding TBX19 2 OTTHUMG00000034648.2 +9888 chr1 ENSEMBL gene 168375524 168375621 98.0 + 0 ENSG00000207974.1 miRNA MIR557 3 +9889 chr1 HAVANA gene 168317497 168376876 1678.0 + 0 ENSG00000227722.2 transcribed_processed_pseudogene AL022100.1 1 OTTHUMG00000034643.2 pseudo_consens +9890 chr1 HAVANA gene 168401483 168407274 389.0 - 0 ENSG00000283255.1 lincRNA AL022100.2 2 OTTHUMG00000034644.2 +9891 chr1 HAVANA gene 168449672 168451211 1540.0 - 0 ENSG00000215833.3 processed_pseudogene QRSL1P1 1 OTTHUMG00000034645.2 pseudo_consens +9892 chr1 HAVANA gene 168400829 168495685 2476.0 - 0 ENSG00000228697.3 lincRNA AL023755.1 2 OTTHUMG00000040769.4 +9893 chr1 HAVANA gene 168542737 168543354 618.0 + 0 ENSG00000227777.1 processed_pseudogene AL031736.1 1 OTTHUMG00000034552.1 pseudo_consens +9894 chr1 HAVANA gene 168540765 168543997 565.0 - 0 ENSG00000143185.3 protein_coding XCL2 2 OTTHUMG00000034549.1 +9895 chr1 HAVANA gene 168578653 168579439 787.0 - 0 ENSG00000229757.2 processed_pseudogene AL031736.2 1 OTTHUMG00000034553.3 pseudo_consens +9896 chr1 HAVANA gene 168576473 168582077 1367.0 + 0 ENSG00000143184.4 protein_coding XCL1 2 OTTHUMG00000034548.1 +9897 chr1 HAVANA gene 168695459 168729264 1786.0 - 0 ENSG00000143196.4 protein_coding DPT 2 OTTHUMG00000034554.2 overlapping_locus +9898 chr1 HAVANA gene 168763365 168774490 418.0 - 0 ENSG00000235736.1 lincRNA AL031275.1 2 OTTHUMG00000034550.1 +9899 chr1 HAVANA gene 168786939 168792886 955.0 + 0 ENSG00000225826.1 lincRNA LINC00626 2 OTTHUMG00000034551.2 +9900 chr1 HAVANA gene 168898136 168898439 304.0 + 0 ENSG00000229612.1 processed_pseudogene SUMO1P2 1 OTTHUMG00000034587.1 pseudo_consens +9901 chr1 HAVANA gene 168938467 168938923 457.0 + 0 ENSG00000213063.3 processed_pseudogene RPL29P7 1 OTTHUMG00000034589.1 pseudo_consens +9902 chr1 ENSEMBL gene 169067264 169067364 101.0 + 0 ENSG00000252987.1 rRNA_pseudogene RNA5SP66 3 +9903 chr1 HAVANA gene 168903905 169087005 1129.0 - 0 ENSG00000203601.3 lincRNA LINC00970 2 OTTHUMG00000034588.1 overlapping_locus +9904 chr1 HAVANA gene 168695874 169103276 1681.0 - 0 ENSG00000285622.1 processed_transcript AL135926.1 2 OTTHUMG00000193426.1 overlapping_locus +9905 chr1 HAVANA gene 169104124 169104907 568.0 + 0 ENSG00000237707.1 antisense AL031726.1 1 OTTHUMG00000034591.1 +9906 chr1 HAVANA gene 169105697 169132722 2962.0 + 0 ENSG00000143153.12 protein_coding ATP1B1 2 OTTHUMG00000034590.3 +9907 chr1 HAVANA gene 169310665 169322479 368.0 + 0 ENSG00000235575.1 antisense Z99758.1 2 OTTHUMG00000035451.1 +9908 chr1 HAVANA gene 169132531 169367967 5737.0 - 0 ENSG00000143156.13 protein_coding NME7 2 OTTHUMG00000034586.4 +9909 chr1 HAVANA gene 169367970 169396540 3820.0 + 0 ENSG00000117475.13 protein_coding BLZF1 2 OTTHUMG00000035453.2 +9910 chr1 HAVANA gene 169394870 169460669 3961.0 - 0 ENSG00000117477.12 protein_coding CCDC181 2 OTTHUMG00000035448.4 overlapping_locus +9911 chr1 HAVANA gene 169474060 169474159 100.0 - 0 ENSG00000234604.2 processed_pseudogene AL021068.2 2 OTTHUMG00000035450.2 overlapping_locus +9912 chr1 HAVANA gene 169463909 169486003 3671.0 - 0 ENSG00000117479.13 protein_coding SLC19A2 2 OTTHUMG00000035452.4 overlapping_locus +9913 chr1 HAVANA gene 169486076 169486986 911.0 + 0 ENSG00000213062.4 lincRNA AL021068.1 2 OTTHUMG00000186558.1 +9914 chr1 HAVANA gene 169514166 169586588 7158.0 - 0 ENSG00000198734.10 protein_coding F5 1 OTTHUMG00000034595.3 +9915 chr1 HAVANA gene 169588849 169630193 3490.0 - 0 ENSG00000174175.16 protein_coding SELP 2 OTTHUMG00000034685.9 +9916 chr1 HAVANA gene 169690667 169711698 2725.0 - 0 ENSG00000188404.8 protein_coding SELL 2 OTTHUMG00000034809.3 +9917 chr1 HAVANA gene 169762929 169764648 677.0 - 0 ENSG00000230704.1 lincRNA AL021940.1 1 OTTHUMG00000035812.1 overlapping_locus +9918 chr1 HAVANA gene 169722641 169764705 4585.0 - 0 ENSG00000007908.15 protein_coding SELE 1 OTTHUMG00000034851.8 overlapping_locus +9919 chr1 HAVANA gene 169792529 169794966 1578.0 - 0 ENSG00000171806.11 protein_coding METTL18 2 OTTHUMG00000035813.2 +9920 chr1 HAVANA gene 169662007 169854080 5967.0 + 0 ENSG00000000460.16 protein_coding C1orf112 2 OTTHUMG00000035821.8 +9921 chr1 ENSEMBL gene 169859756 169860052 297.0 + 0 ENSG00000239494.2 misc_RNA RN7SL333P 3 +9922 chr1 HAVANA gene 169849631 169894267 6883.0 - 0 ENSG00000000457.13 protein_coding SCYL3 2 OTTHUMG00000035941.5 +9923 chr1 ENSEMBL gene 169957942 169958246 305.0 - 0 ENSG00000243051.3 misc_RNA RN7SL269P 3 +9924 chr1 HAVANA gene 169990067 169990196 130.0 + 0 ENSG00000235378.2 processed_pseudogene MRPS10P1 2 OTTHUMG00000035958.2 +9925 chr1 HAVANA gene 170024077 170024683 341.0 + 0 ENSG00000232959.1 antisense AL356475.1 2 OTTHUMG00000035956.1 +9926 chr1 HAVANA gene 169921326 170085208 4978.0 - 0 ENSG00000075945.12 protein_coding KIFAP3 2 OTTHUMG00000035947.2 ncRNA_host +9927 chr1 HAVANA gene 170115636 170116576 941.0 + 0 ENSG00000224896.2 processed_pseudogene SIGLEC30P 2 OTTHUMG00000035957.2 +9928 chr1 ENSEMBL gene 170151378 170151462 85.0 - 0 ENSG00000283340.1 miRNA MIR3119-1 3 +9929 chr1 ENSEMBL gene 170151378 170151462 85.0 + 0 ENSG00000263390.1 miRNA MIR3119-2 3 +9930 chr1 HAVANA gene 170146001 170167790 1204.0 + 0 ENSG00000203740.3 protein_coding METTL11B 2 OTTHUMG00000035959.2 ncRNA_host +9931 chr1 HAVANA gene 170211010 170211457 448.0 - 0 ENSG00000238051.1 processed_pseudogene ISCUP1 1 OTTHUMG00000035970.1 pseudo_consens +9932 chr1 HAVANA gene 170174403 170241287 760.0 + 0 ENSG00000233985.1 lincRNA LINC01681 2 OTTHUMG00000035971.1 +9933 chr1 HAVANA gene 170271603 170284208 1527.0 - 0 ENSG00000224286.5 lincRNA LINC01142 2 OTTHUMG00000035969.1 +9934 chr1 HAVANA gene 170369223 170370367 1145.0 - 0 ENSG00000226967.1 processed_pseudogene HAUS4P1 1 OTTHUMG00000034663.1 pseudo_consens +9935 chr1 HAVANA gene 170460453 170532647 3185.0 - 0 ENSG00000231407.5 antisense AL354732.1 2 OTTHUMG00000035227.1 +9936 chr1 HAVANA gene 170532129 170553446 3773.0 + 0 ENSG00000120370.12 protein_coding GORAB 2 OTTHUMG00000035228.2 +9937 chr1 HAVANA gene 170587249 170588236 130.0 - 0 ENSG00000225545.1 lincRNA AL162399.1 2 OTTHUMG00000035229.1 +9938 chr1 HAVANA gene 170598854 170647339 1923.0 + 0 ENSG00000235303.1 lincRNA AL023495.1 2 OTTHUMG00000035230.1 +9939 chr1 HAVANA gene 170667381 170669425 2045.0 + 0 ENSG00000271811.1 lincRNA Z97200.1 2 OTTHUMG00000185301.1 overlapping_locus +9940 chr1 HAVANA gene 170662728 170739419 8246.0 + 0 ENSG00000116132.11 protein_coding PRRX1 1 OTTHUMG00000035231.6 overlapping_locus +9941 chr1 HAVANA gene 170935471 171064765 3831.0 + 0 ENSG00000117501.14 protein_coding MROH9 2 OTTHUMG00000041456.1 +9942 chr1 HAVANA gene 171083565 171085205 1641.0 + 0 ENSG00000226552.2 processed_pseudogene BX284613.1 1 OTTHUMG00000041457.1 pseudo_consens +9943 chr1 ENSEMBL gene 171101739 171101798 60.0 + 0 ENSG00000283598.1 miRNA MIR1295B 3 +9944 chr1 ENSEMBL gene 171101728 171101806 79.0 - 0 ENSG00000221390.1 miRNA MIR1295A 3 +9945 chr1 HAVANA gene 171090877 171117819 3463.0 + 0 ENSG00000007933.12 protein_coding FMO3 2 OTTHUMG00000035505.4 ncRNA_host +9946 chr1 HAVANA gene 171137740 171161568 2565.0 + 0 ENSG00000117507.6 transcribed_unitary_pseudogene FMO6P 1 OTTHUMG00000035503.9 +9947 chr1 HAVANA gene 171185208 171211230 4786.0 + 0 ENSG00000094963.13 protein_coding FMO2 2 OTTHUMG00000035504.7 +9948 chr1 HAVANA gene 171199244 171227788 796.0 - 0 ENSG00000225243.5 antisense AL021026.1 1 OTTHUMG00000035507.1 +9949 chr1 HAVANA gene 171247580 171251794 416.0 - 0 ENSG00000231424.2 antisense AL445673.1 1 OTTHUMG00000035508.2 +9950 chr1 ENSEMBL gene 171253906 171254022 117.0 - 0 ENSG00000206692.1 misc_RNA RF00019 3 +9951 chr1 HAVANA gene 171270954 171271590 637.0 - 0 ENSG00000230547.1 processed_pseudogene HMGB1P11 1 OTTHUMG00000035509.1 pseudo_consens +9952 chr1 HAVANA gene 171248471 171285978 3602.0 + 0 ENSG00000010932.16 protein_coding FMO1 2 OTTHUMG00000035502.4 +9953 chr1 HAVANA gene 171339299 171339959 661.0 + 0 ENSG00000285665.1 processed_pseudogene AL031274.1 2 OTTHUMG00000192654.1 +9954 chr1 HAVANA gene 171314208 171342084 2517.0 + 0 ENSG00000076258.9 protein_coding FMO4 2 OTTHUMG00000035506.1 +9955 chr1 HAVANA gene 171345105 171345307 203.0 - 0 ENSG00000268062.1 processed_pseudogene SRP14P4 1 OTTHUMG00000035501.2 pseudo_consens +9956 chr1 HAVANA gene 171392229 171392790 562.0 + 0 ENSG00000239428.2 processed_pseudogene GM2AP2 1 OTTHUMG00000158542.2 pseudo_consens +9957 chr1 HAVANA gene 171444699 171444963 265.0 - 0 ENSG00000234333.2 processed_pseudogene CYCSP53 1 OTTHUMG00000057643.2 pseudo_consens +9958 chr1 HAVANA gene 171485551 171593511 13921.0 + 0 ENSG00000117523.16 protein_coding PRRC2C 2 OTTHUMG00000034665.10 +9959 chr1 HAVANA gene 171600621 171638799 2645.0 + 0 ENSG00000283683.1 protein_coding MYOCOS 2 OTTHUMG00000191791.1 +9960 chr1 HAVANA gene 171635417 171652683 2099.0 - 0 ENSG00000034971.16 protein_coding MYOC 2 OTTHUMG00000034789.3 +9961 chr1 HAVANA gene 171670517 171670939 423.0 - 0 ENSG00000233328.3 processed_pseudogene PFN1P1 1 OTTHUMG00000034791.2 pseudo_consens +9962 chr1 HAVANA gene 171683128 171684438 1311.0 - 0 ENSG00000230364.1 processed_pseudogene RPL4P3 1 OTTHUMG00000034790.1 pseudo_consens +9963 chr1 HAVANA gene 171700160 171742247 5159.0 - 0 ENSG00000117533.14 protein_coding VAMP4 2 OTTHUMG00000034788.4 +9964 chr1 HAVANA gene 171751543 171752025 381.0 - 0 ENSG00000232261.1 unprocessed_pseudogene Z98751.1 1 OTTHUMG00000057645.1 pseudo_consens +9965 chr1 HAVANA gene 171755803 171756323 521.0 - 0 ENSG00000271459.1 processed_pseudogene Z98751.3 1 OTTHUMG00000184432.2 pseudo_consens +9966 chr1 HAVANA gene 171762074 171762524 451.0 + 0 ENSG00000236741.4 processed_pseudogene Z98751.2 1 OTTHUMG00000035055.2 pseudo_consens +9967 chr1 ENSEMBL gene 171768070 171768175 106.0 + 0 ENSG00000253060.1 scaRNA RF00601 3 +9968 chr1 HAVANA gene 171803517 171803939 423.0 + 0 ENSG00000213060.4 processed_pseudogene AL031864.1 1 OTTHUMG00000035054.2 pseudo_consens,overlapping_locus +9969 chr1 HAVANA gene 171781664 171814023 3827.0 + 0 ENSG00000010165.19 protein_coding METTL13 2 OTTHUMG00000034912.6 overlapping_locus +9970 chr1 HAVANA gene 171824610 171824959 350.0 - 0 ENSG00000224600.5 processed_pseudogene AL031864.2 1 OTTHUMG00000034911.1 pseudo_consens +9971 chr1 HAVANA gene 171864187 171864687 396.0 + 0 ENSG00000233540.1 sense_intronic DNM3-IT1 2 OTTHUMG00000046154.1 overlapping_locus +9972 chr1 ENSEMBL gene 172138808 172138888 81.0 + 0 ENSG00000283152.1 miRNA MIR3120 3 +9973 chr1 ENSEMBL gene 172138798 172138907 110.0 - 0 ENSG00000283844.1 miRNA MIR214 3 +9974 chr1 ENSEMBL gene 172144535 172144644 110.0 - 0 ENSG00000208024.1 miRNA MIR199A2 3 +9975 chr1 HAVANA gene 172138397 172144840 3195.0 - 0 ENSG00000230630.5 antisense DNM3OS 2 OTTHUMG00000040855.4 ncRNA_host +9976 chr1 ENSEMBL gene 172366540 172366646 107.0 + 0 ENSG00000206684.1 snRNA RNU6-157P 3 +9977 chr1 HAVANA gene 171841498 172418466 11329.0 + 0 ENSG00000197959.13 protein_coding DNM3 1 OTTHUMG00000034913.5 ncRNA_host,overlapping_locus +9978 chr1 HAVANA gene 172370189 172444086 5225.0 - 0 ENSG00000135845.9 protein_coding PIGC 2 OTTHUMG00000034751.2 +9979 chr1 HAVANA gene 172420688 172468831 1725.0 + 0 ENSG00000180999.10 protein_coding C1orf105 2 OTTHUMG00000034750.4 +9980 chr1 HAVANA gene 172532349 172611833 7894.0 + 0 ENSG00000094975.13 protein_coding SUCO 2 OTTHUMG00000034839.4 +9981 chr1 ENSEMBL gene 172613428 172613534 107.0 - 0 ENSG00000251943.1 snRNA RNU6-693P 3 +9982 chr1 HAVANA gene 172659018 172666874 1888.0 + 0 ENSG00000117560.7 protein_coding FASLG 2 OTTHUMG00000034841.1 +9983 chr1 HAVANA gene 172748560 172749502 943.0 + 0 ENSG00000229785.1 processed_pseudogene SLC25A38P1 1 OTTHUMG00000034836.1 pseudo_consens +9984 chr1 HAVANA gene 172752586 172752924 339.0 + 0 ENSG00000279061.1 TEC Z98043.1 2 OTTHUMG00000176126.1 +9985 chr1 HAVANA gene 172885947 172886258 312.0 - 0 ENSG00000227177.1 processed_pseudogene AIMP1P2 1 OTTHUMG00000034833.1 pseudo_consens +9986 chr1 HAVANA gene 172906900 172907684 658.0 + 0 ENSG00000224000.1 lincRNA Z97198.1 2 OTTHUMG00000034834.1 overlapping_locus +9987 chr1 HAVANA gene 173039960 173050963 2008.0 - 0 ENSG00000120337.8 protein_coding TNFSF18 2 OTTHUMG00000034835.2 +9988 chr1 HAVANA gene 172775905 173064015 808.0 + 0 ENSG00000224228.2 lincRNA AL031599.1 2 OTTHUMG00000040853.2 overlapping_locus +9989 chr1 HAVANA gene 173141100 173142350 1251.0 - 0 ENSG00000230849.2 processed_pseudogene GOT2P2 1 OTTHUMG00000034837.1 pseudo_consens +9990 chr1 HAVANA gene 173174300 173175503 690.0 - 0 ENSG00000226375.1 lincRNA AL022310.1 2 OTTHUMG00000034840.1 +9991 chr1 HAVANA gene 173183734 173207313 3942.0 - 0 ENSG00000117586.10 protein_coding TNFSF4 2 OTTHUMG00000034838.2 +9992 chr1 HAVANA gene 173351689 173352004 316.0 + 0 ENSG00000232751.1 processed_pseudogene AL645568.3 1 OTTHUMG00000034805.1 pseudo_consens +9993 chr1 HAVANA gene 173362397 173363733 1337.0 - 0 ENSG00000231615.2 processed_pseudogene AL645568.2 1 OTTHUMG00000034806.2 pseudo_consens +9994 chr1 HAVANA gene 173417793 173461362 2282.0 - 0 ENSG00000203739.3 antisense AL645568.1 2 OTTHUMG00000034807.1 +9995 chr1 HAVANA gene 173477266 173488807 2367.0 + 0 ENSG00000117592.8 protein_coding PRDX6 2 OTTHUMG00000034804.1 +9996 chr1 HAVANA gene 173500464 173603094 4916.0 - 0 ENSG00000162753.12 protein_coding SLC9C2 2 OTTHUMG00000034800.3 overlapping_locus +9997 chr1 HAVANA gene 173555251 173612772 677.0 + 0 ENSG00000238272.1 antisense AL139142.1 2 OTTHUMG00000034801.1 +9998 chr1 HAVANA gene 173635333 173637134 821.0 + 0 ENSG00000232113.2 protein_coding TEX50 2 OTTHUMG00000040547.2 +9999 chr1 HAVANA gene 173596060 173669837 1786.0 - 0 ENSG00000285777.1 protein_coding AL139142.2 2 OTTHUMG00000193428.1 overlapping_locus +10000 chr1 HAVANA gene 173609561 173669862 2911.0 - 0 ENSG00000183831.6 protein_coding ANKRD45 2 OTTHUMG00000040546.3 overlapping_locus +10001 chr1 HAVANA gene 173741674 173741928 255.0 + 0 ENSG00000225591.2 processed_pseudogene BX248409.1 1 OTTHUMG00000040549.2 pseudo_consens,overlapping_locus +10002 chr1 HAVANA gene 173714941 173786702 4254.0 + 0 ENSG00000076321.10 protein_coding KLHL20 2 OTTHUMG00000040548.1 overlapping_locus +10003 chr1 ENSEMBL gene 173791548 173791887 340.0 + 0 ENSG00000200674.1 misc_RNA RN7SKP160 3 +10004 chr1 ENSEMBL gene 173808489 173808622 134.0 + 0 ENSG00000252357.1 misc_RNA RF00019 3 +10005 chr1 HAVANA gene 173799550 173824720 4914.0 - 0 ENSG00000120334.15 protein_coding CENPL 2 OTTHUMG00000034802.1 +10006 chr1 HAVANA gene 173824568 173858808 7438.0 + 0 ENSG00000117593.10 protein_coding DARS2 2 OTTHUMG00000034803.10 +10007 chr1 HAVANA gene 173863248 173863941 694.0 + 0 ENSG00000270084.1 antisense GAS5-AS1 2 OTTHUMG00000184089.1 +10008 chr1 HAVANA gene 173863900 173868882 3631.0 - 0 ENSG00000234741.7 processed_transcript GAS5 2 OTTHUMG00000037216.5 +10009 chr1 HAVANA gene 173868082 173903549 19464.0 + 0 ENSG00000185278.15 protein_coding ZBTB37 2 OTTHUMG00000037274.5 +10010 chr1 HAVANA gene 173903804 173917378 1768.0 - 0 ENSG00000117601.13 protein_coding SERPINC1 2 OTTHUMG00000037276.1 +10011 chr1 ENSEMBL gene 173921070 173921200 131.0 + 0 ENSG00000252231.1 rRNA_pseudogene RNA5SP67 3 +10012 chr1 ENSEMBL gene 173969318 173969436 119.0 - 0 ENSG00000200755.1 rRNA_pseudogene RNA5SP68 3 +10013 chr1 HAVANA gene 174009267 174016206 448.0 - 0 ENSG00000236535.1 sense_intronic RC3H1-IT1 2 OTTHUMG00000034823.1 overlapping_locus +10014 chr1 HAVANA gene 173931214 174022297 11508.0 - 0 ENSG00000135870.11 protein_coding RC3H1 2 OTTHUMG00000037275.4 overlapping_locus +10015 chr1 HAVANA gene 174022509 174022985 335.0 + 0 ENSG00000224977.1 lincRNA AL121983.1 2 OTTHUMG00000034820.1 +10016 chr1 HAVANA gene 174090136 174090474 339.0 - 0 ENSG00000225713.5 processed_pseudogene RPL30P1 1 OTTHUMG00000034821.2 pseudo_consens +10017 chr1 HAVANA gene 174115300 174160004 1158.0 - 0 ENSG00000227373.5 lincRNA AL121983.2 2 OTTHUMG00000034822.1 +10018 chr1 HAVANA gene 174367105 174368039 935.0 - 0 ENSG00000237317.2 processed_pseudogene AL022400.1 1 OTTHUMG00000034900.2 pseudo_consens +10019 chr1 HAVANA gene 174448111 174449198 1088.0 + 0 ENSG00000203737.3 protein_coding GPR52 2 OTTHUMG00000034901.1 overlapping_locus +10020 chr1 HAVANA gene 174756850 174757119 270.0 - 0 ENSG00000223828.1 processed_pseudogene BANF1P4 1 OTTHUMG00000034935.1 pseudo_consens +10021 chr1 HAVANA gene 174849667 174850168 502.0 - 0 ENSG00000231378.1 processed_pseudogene NDUFAF4P4 1 OTTHUMG00000034937.1 pseudo_consens +10022 chr1 HAVANA gene 174892417 174893155 395.0 + 0 ENSG00000237249.1 processed_pseudogene Z99127.3 1 OTTHUMG00000034936.1 pseudo_consens,overlapping_locus +10023 chr1 HAVANA gene 174896958 174897996 737.0 + 0 ENSG00000223525.1 sense_intronic RABGAP1L-IT1 2 OTTHUMG00000034938.1 overlapping_locus +10024 chr1 HAVANA gene 174922107 174922440 334.0 - 0 ENSG00000235869.1 processed_pseudogene Z99127.2 1 OTTHUMG00000034939.1 pseudo_consens +10025 chr1 HAVANA gene 174934947 174954261 971.0 - 0 ENSG00000229531.5 antisense Z99127.1 2 OTTHUMG00000034940.1 +10026 chr1 HAVANA gene 174159410 174995308 16071.0 + 0 ENSG00000152061.23 protein_coding RABGAP1L 2 OTTHUMG00000034899.9 overlapping_locus +10027 chr1 ENSEMBL gene 174996524 174996629 106.0 + 0 ENSG00000252552.1 snRNA RNU6-307P 3 +10028 chr1 HAVANA gene 174999163 175011715 4511.0 + 0 ENSG00000116161.17 protein_coding CACYBP 1 OTTHUMG00000034941.7 +10029 chr1 ENSEMBL gene 175022479 175022580 102.0 - 0 ENSG00000206659.1 misc_RNA RF00019 3 +10030 chr1 HAVANA gene 175010789 175023425 2594.0 - 0 ENSG00000120333.4 protein_coding MRPS14 2 OTTHUMG00000034878.4 ncRNA_host +10031 chr1 HAVANA gene 175044626 175045648 1023.0 - 0 ENSG00000181101.7 processed_pseudogene SDCCAG3P2 1 OTTHUMG00000034951.1 pseudo_consens +10032 chr1 HAVANA gene 175067858 175148066 5008.0 + 0 ENSG00000120332.15 protein_coding TNN 2 OTTHUMG00000034882.1 +10033 chr1 HAVANA gene 175156987 175192999 4783.0 - 0 ENSG00000235750.9 protein_coding KIAA0040 2 OTTHUMG00000034880.5 +10034 chr1 HAVANA gene 175203228 175204849 775.0 - 0 ENSG00000230687.1 lincRNA AL008626.1 2 OTTHUMG00000034947.1 +10035 chr1 HAVANA gene 175297080 175297240 161.0 + 0 ENSG00000233946.2 processed_pseudogene RPS29P4 1 OTTHUMG00000034881.2 pseudo_consens +10036 chr1 HAVANA gene 175307218 175335459 847.0 + 0 ENSG00000260990.1 antisense Z94057.1 2 OTTHUMG00000034877.1 +10037 chr1 HAVANA gene 175538775 175556818 630.0 - 0 ENSG00000235628.1 sense_intronic TNR-IT1 2 OTTHUMG00000034946.1 overlapping_locus +10038 chr1 HAVANA gene 175315194 175743770 12960.0 - 0 ENSG00000116147.16 protein_coding TNR 2 OTTHUMG00000034876.6 overlapping_locus +10039 chr1 HAVANA gene 175877343 175880468 1809.0 + 0 ENSG00000224718.1 lincRNA LINC01657 2 OTTHUMG00000034949.2 +10040 chr1 HAVANA gene 175904762 175920513 657.0 - 0 ENSG00000227740.1 lincRNA AL513329.1 1 OTTHUMG00000034985.1 +10041 chr1 HAVANA gene 175921975 175922145 171.0 + 0 ENSG00000230777.1 processed_pseudogene RPS29P5 1 OTTHUMG00000034948.1 pseudo_consens +10042 chr1 ENSEMBL gene 175968398 175968540 143.0 - 0 ENSG00000252906.1 scaRNA SCARNA3 3 +10043 chr1 HAVANA gene 176017277 176018760 629.0 + 0 ENSG00000228686.2 antisense AL590723.1 2 OTTHUMG00000034984.2 +10044 chr1 HAVANA gene 175944831 176207493 4299.0 - 0 ENSG00000143207.20 protein_coding COP1 2 OTTHUMG00000034986.6 ncRNA_host +10045 chr1 ENSEMBL gene 176217541 176217602 62.0 + 0 ENSG00000273629.1 snRNA RF00066 3 +10046 chr1 HAVANA gene 176207648 176229330 579.0 + 0 ENSG00000236021.1 antisense AL359265.3 1 OTTHUMG00000034988.1 ncRNA_host +10047 chr1 HAVANA gene 176231200 176231830 631.0 - 0 ENSG00000232463.1 processed_pseudogene AL359265.2 1 OTTHUMG00000034990.1 pseudo_consens +10048 chr1 ENSEMBL gene 176243862 176244029 168.0 - 0 ENSG00000253025.1 snRNA RNU2-12P 3 +10049 chr1 HAVANA gene 176272483 176273402 795.0 + 0 ENSG00000227815.2 unprocessed_pseudogene AL359265.1 1 OTTHUMG00000034991.2 pseudo_consens +10050 chr1 HAVANA gene 176305672 176306095 424.0 - 0 ENSG00000231020.1 processed_pseudogene AL591043.1 1 OTTHUMG00000034987.1 pseudo_consens +10051 chr1 HAVANA gene 176367699 176368401 703.0 - 0 ENSG00000225904.1 processed_pseudogene MORF4L1P7 1 OTTHUMG00000034989.1 pseudo_consens +10052 chr1 HAVANA gene 176616273 176616786 514.0 - 0 ENSG00000237514.3 processed_pseudogene PTP4A1P7 1 OTTHUMG00000035043.1 pseudo_consens +10053 chr1 HAVANA gene 176463171 176845605 10930.0 + 0 ENSG00000116183.10 protein_coding PAPPA2 2 OTTHUMG00000035025.4 +10054 chr1 ENSEMBL gene 177029363 177029445 83.0 - 0 ENSG00000202609.4 miRNA MIR488 3 +10055 chr1 HAVANA gene 176857302 177164973 9201.0 - 0 ENSG00000152092.15 protein_coding ASTN1 1 OTTHUMG00000035041.2 ncRNA_host +10056 chr1 HAVANA gene 177171497 177282422 3953.0 + 0 ENSG00000198797.6 protein_coding BRINP2 2 OTTHUMG00000034953.2 +10057 chr1 HAVANA gene 177351586 177366272 491.0 + 0 ENSG00000224968.1 lincRNA LINC01645 2 OTTHUMG00000040861.1 +10058 chr1 HAVANA gene 177393287 177597709 938.0 - 0 ENSG00000227579.5 lincRNA AL122019.1 2 OTTHUMG00000040862.1 +10059 chr1 HAVANA gene 177700524 177710330 1666.0 + 0 ENSG00000236720.1 lincRNA LINC01741 2 OTTHUMG00000040863.1 +10060 chr1 HAVANA gene 177923956 177984303 7377.0 - 0 ENSG00000120341.18 protein_coding SEC16B 1 OTTHUMG00000167206.20 overlapping_locus +10061 chr1 HAVANA gene 178017127 178017343 217.0 + 0 ENSG00000276563.1 processed_pseudogene AL359075.1 2 OTTHUMG00000187543.1 +10062 chr1 HAVANA gene 178006136 178037950 5538.0 - 0 ENSG00000242193.11 transcribed_unitary_pseudogene CRYZL2P 2 OTTHUMG00000154878.4 overlapping_locus +10063 chr1 HAVANA gene 177928788 178038007 7841.0 - 0 ENSG00000254154.8 processed_transcript CRYZL2P-SEC16B 2 OTTHUMG00000035027.25 overlapping_locus +10064 chr1 HAVANA gene 178091508 178093984 2356.0 - 0 ENSG00000224687.1 lincRNA RASAL2-AS1 2 OTTHUMG00000040865.1 +10065 chr1 HAVANA gene 178194342 178194709 311.0 - 0 ENSG00000270575.1 processed_pseudogene AL160281.1 1 OTTHUMG00000184436.1 pseudo_consens +10066 chr1 HAVANA gene 178411616 178411972 357.0 + 0 ENSG00000213058.3 processed_pseudogene AL365357.1 1 OTTHUMG00000035020.1 pseudo_consens,overlapping_locus +10067 chr1 HAVANA gene 178094141 178484147 16044.0 + 0 ENSG00000075391.16 protein_coding RASAL2 2 OTTHUMG00000035022.4 overlapping_locus +10068 chr1 ENSEMBL gene 178484408 178484682 275.0 + 0 ENSG00000264809.2 misc_RNA RF00017 3 +10069 chr1 HAVANA gene 178479247 178499634 2588.0 - 0 ENSG00000188585.9 protein_coding CLEC20A 2 OTTHUMG00000035021.6 +10070 chr1 HAVANA gene 178511563 178513051 1130.0 - 0 ENSG00000285910.1 bidirectional_promoter_lncRNA AL513013.1 2 OTTHUMG00000193022.2 +10071 chr1 HAVANA gene 178513077 178548602 4038.0 + 0 ENSG00000240021.9 protein_coding TEX35 2 OTTHUMG00000035023.5 overlapping_locus +10072 chr1 HAVANA gene 178542752 178548889 2775.0 + 0 ENSG00000213057.5 lincRNA C1orf220 2 OTTHUMG00000035078.2 overlapping_locus +10073 chr1 ENSEMBL gene 178560913 178561029 117.0 + 0 ENSG00000201347.1 rRNA_pseudogene RNA5SP69 3 +10074 chr1 HAVANA gene 178651706 178652282 577.0 + 0 ENSG00000273384.1 lincRNA AL137796.1 2 OTTHUMG00000186472.1 +10075 chr1 ENSEMBL gene 178677749 178677834 86.0 + 0 ENSG00000266417.1 miRNA MIR4424 3 +10076 chr1 HAVANA gene 178724306 178726285 1980.0 - 0 ENSG00000273062.1 antisense AL449106.1 2 OTTHUMG00000186473.1 +10077 chr1 HAVANA gene 178746683 178747754 1072.0 - 0 ENSG00000228196.1 processed_pseudogene PTPN2P1 1 OTTHUMG00000035074.1 pseudo_consens +10078 chr1 ENSEMBL gene 178753654 178753772 119.0 - 0 ENSG00000201791.1 snoRNA RF00092 3 +10079 chr1 HAVANA gene 178849705 178871052 3403.0 - 0 ENSG00000116194.12 protein_coding ANGPTL1 2 OTTHUMG00000035075.4 +10080 chr1 HAVANA gene 178725147 178921841 9178.0 + 0 ENSG00000116191.17 protein_coding RALGPS2 2 OTTHUMG00000035076.5 +10081 chr1 HAVANA gene 179035309 179035652 344.0 - 0 ENSG00000232750.2 processed_pseudogene AL139132.1 1 OTTHUMG00000057647.2 pseudo_consens +10082 chr1 HAVANA gene 179025804 179076562 6039.0 + 0 ENSG00000116199.11 protein_coding FAM20B 2 OTTHUMG00000035073.3 +10083 chr1 HAVANA gene 179081377 179098023 3917.0 + 0 ENSG00000186283.13 protein_coding TOR3A 2 OTTHUMG00000035077.5 +10084 chr1 HAVANA gene 179137764 179137934 171.0 + 0 ENSG00000234041.1 processed_pseudogene AL512326.3 1 OTTHUMG00000041095.1 pseudo_consens +10085 chr1 HAVANA gene 179183734 179184547 814.0 + 0 ENSG00000231905.2 processed_pseudogene SETP10 1 OTTHUMG00000041096.1 pseudo_consens +10086 chr1 ENSEMBL gene 179196473 179196579 107.0 + 0 ENSG00000212338.1 snoRNA RF00272 3 +10087 chr1 ENSEMBL gene 179201487 179201627 141.0 + 0 ENSG00000201619.1 snoRNA RF00272 3 +10088 chr1 HAVANA gene 179201705 179201926 222.0 + 0 ENSG00000231564.1 processed_pseudogene EIF4A1P11 1 OTTHUMG00000041097.1 pseudo_consens +10089 chr1 HAVANA gene 179220938 179222125 721.0 + 0 ENSG00000225711.1 processed_pseudogene AL512326.1 1 OTTHUMG00000041098.1 pseudo_consens +10090 chr1 HAVANA gene 179099327 179229684 13257.0 - 0 ENSG00000143322.19 protein_coding ABL2 2 OTTHUMG00000035199.6 +10091 chr1 HAVANA gene 179255733 179256081 349.0 + 0 ENSG00000223794.1 processed_pseudogene COX5BP8 1 OTTHUMG00000041099.1 pseudo_consens +10092 chr1 HAVANA gene 179271116 179271266 151.0 - 0 ENSG00000228191.1 processed_pseudogene AL512326.2 1 OTTHUMG00000057651.1 pseudo_consens +10093 chr1 HAVANA gene 179293714 179358680 7005.0 + 0 ENSG00000057252.12 protein_coding SOAT1 2 OTTHUMG00000035253.2 +10094 chr1 HAVANA gene 179447578 179448440 863.0 - 0 ENSG00000224620.2 processed_pseudogene MEF2AP1 1 OTTHUMG00000035267.2 pseudo_consens,overlapping_locus +10095 chr1 HAVANA gene 179447602 179457315 9714.0 - 0 ENSG00000236539.3 processed_pseudogene HNRNPA1P54 1 OTTHUMG00000035268.2 pseudo_consens,overlapping_locus +10096 chr1 HAVANA gene 179543201 179548922 3294.0 - 0 ENSG00000261250.1 antisense AL160286.3 2 OTTHUMG00000035254.1 +10097 chr1 HAVANA gene 179365720 179554735 6089.0 + 0 ENSG00000162779.21 protein_coding AXDND1 1 OTTHUMG00000035266.7 +10098 chr1 HAVANA gene 179550539 179575952 1874.0 - 0 ENSG00000116218.12 protein_coding NPHS2 2 OTTHUMG00000035252.1 +10099 chr1 ENSEMBL gene 179576268 179576349 82.0 + 0 ENSG00000251875.1 snRNA RNU5F-2P 3 +10100 chr1 HAVANA gene 179586705 179589175 2471.0 + 0 ENSG00000227141.2 processed_pseudogene AL160286.1 1 OTTHUMG00000035255.2 pseudo_consens +10101 chr1 HAVANA gene 179590372 179591305 934.0 + 0 ENSG00000261060.1 sense_overlapping AL160286.2 2 OTTHUMG00000176142.2 +10102 chr1 HAVANA gene 179591613 179691272 4256.0 + 0 ENSG00000162782.15 protein_coding TDRD5 2 OTTHUMG00000035259.1 +10103 chr1 HAVANA gene 179730217 179742697 629.0 + 0 ENSG00000243062.5 lincRNA AL359853.3 2 OTTHUMG00000035261.1 +10104 chr1 HAVANA gene 179743163 179816198 2909.0 + 0 ENSG00000143340.6 protein_coding FAM163A 2 OTTHUMG00000035262.1 +10105 chr1 HAVANA gene 179816184 179818191 601.0 - 0 ENSG00000229407.5 antisense AL359853.1 2 OTTHUMG00000035263.1 +10106 chr1 HAVANA gene 179829609 179836124 353.0 - 0 ENSG00000231966.1 lincRNA AL359853.2 2 OTTHUMG00000035264.1 +10107 chr1 HAVANA gene 179839967 179877803 18876.0 - 0 ENSG00000169905.12 protein_coding TOR1AIP2 2 OTTHUMG00000035265.5 +10108 chr1 HAVANA gene 179881607 179882595 989.0 - 0 ENSG00000272906.1 lincRNA AL353708.3 2 OTTHUMG00000186037.1 +10109 chr1 ENSEMBL gene 179900262 179900564 303.0 + 0 ENSG00000264916.2 misc_RNA RN7SL230P 3 +10110 chr1 HAVANA gene 179882042 179925000 9615.0 + 0 ENSG00000143337.18 protein_coding TOR1AIP1 1 OTTHUMG00000035257.10 ncRNA_host +10111 chr1 HAVANA gene 179926641 179941796 447.0 - 0 ENSG00000261831.2 lincRNA AL353708.2 2 OTTHUMG00000035258.2 +10112 chr1 HAVANA gene 179953184 179954440 1257.0 - 0 ENSG00000260360.1 lincRNA AL353708.1 2 OTTHUMG00000176152.1 +10113 chr1 HAVANA gene 179968686 179969506 821.0 + 0 ENSG00000235145.2 processed_pseudogene RPSAP16 1 OTTHUMG00000035260.2 pseudo_consens,overlapping_locus +10114 chr1 HAVANA gene 180000438 180000808 371.0 - 0 ENSG00000223450.1 processed_pseudogene AL590632.1 1 OTTHUMG00000057653.1 pseudo_consens +10115 chr1 HAVANA gene 179954738 180114880 14301.0 + 0 ENSG00000135837.15 protein_coding CEP350 2 OTTHUMG00000035269.4 overlapping_locus +10116 chr1 HAVANA gene 180117140 180123890 506.0 - 0 ENSG00000261817.1 lincRNA AL390718.1 2 OTTHUMG00000035251.1 +10117 chr1 HAVANA gene 180154834 180204030 9311.0 + 0 ENSG00000116260.16 protein_coding QSOX1 1 OTTHUMG00000035256.3 +10118 chr1 HAVANA gene 180230286 180278982 6061.0 + 0 ENSG00000121454.5 protein_coding LHX4 2 OTTHUMG00000035115.3 +10119 chr1 HAVANA gene 180434800 180435936 835.0 + 0 ENSG00000235060.1 processed_pseudogene VDAC1P4 1 OTTHUMG00000035114.1 pseudo_consens +10120 chr1 ENSEMBL gene 180438314 180438390 77.0 - 0 ENSG00000265435.1 miRNA MIR3121 3 +10121 chr1 HAVANA gene 180269653 180502954 7512.0 - 0 ENSG00000230124.7 protein_coding ACBD6 2 OTTHUMG00000035117.4 ncRNA_host,overlapping_locus +10122 chr1 ENSEMBL gene 180519016 180519119 104.0 - 0 ENSG00000206905.1 misc_RNA RF00019 3 +10123 chr1 HAVANA gene 180552749 180566520 1604.0 + 0 ENSG00000236719.3 lincRNA OVAAL 2 OTTHUMG00000035112.2 +10124 chr1 ENSEMBL gene 180758722 180758817 96.0 + 0 ENSG00000283575.1 snRNA RF00026 3 +10125 chr1 HAVANA gene 180632004 180890251 8903.0 + 0 ENSG00000143324.13 protein_coding XPR1 2 OTTHUMG00000035116.2 ncRNA_host +10126 chr1 HAVANA gene 180906651 180909166 748.0 + 0 ENSG00000225857.5 lincRNA AL162431.1 2 OTTHUMG00000035182.1 +10127 chr1 HAVANA gene 180913154 180951614 10195.0 + 0 ENSG00000135835.11 protein_coding KIAA1614 2 OTTHUMG00000035183.2 +10128 chr1 HAVANA gene 180949699 180954887 1440.0 - 0 ENSG00000232586.1 antisense KIAA1614-AS1 2 OTTHUMG00000035173.1 overlapping_locus +10129 chr1 HAVANA gene 180964511 180965909 537.0 + 0 ENSG00000251520.1 unprocessed_pseudogene AL162431.3 2 OTTHUMG00000035176.1 +10130 chr1 HAVANA gene 180970837 180971247 411.0 + 0 ENSG00000270711.1 processed_pseudogene AL162431.4 1 OTTHUMG00000184453.1 pseudo_consens +10131 chr1 HAVANA gene 180944042 180976482 2424.0 - 0 ENSG00000243155.1 antisense AL162431.2 2 OTTHUMG00000035174.1 overlapping_locus +10132 chr1 HAVANA gene 180972712 181023121 6477.0 - 0 ENSG00000135823.13 protein_coding STX6 2 OTTHUMG00000035179.1 overlapping_locus +10133 chr1 HAVANA gene 181033425 181061938 9348.0 + 0 ENSG00000153029.14 protein_coding MR1 2 OTTHUMG00000035175.2 +10134 chr1 HAVANA gene 181088712 181092899 4188.0 + 0 ENSG00000162783.10 protein_coding IER5 2 OTTHUMG00000035178.2 +10135 chr1 HAVANA gene 181174484 181182208 667.0 + 0 ENSG00000237292.1 lincRNA LINC01732 2 OTTHUMG00000035180.1 +10136 chr1 HAVANA gene 181190471 181191149 532.0 - 0 ENSG00000225359.1 lincRNA AL358393.1 2 OTTHUMG00000035181.1 +10137 chr1 HAVANA gene 181236388 181238604 259.0 + 0 ENSG00000179452.2 lincRNA LINC01699 2 OTTHUMG00000035177.1 +10138 chr1 ENSEMBL gene 181668749 181669028 280.0 + 0 ENSG00000273573.1 misc_RNA RF00017 3 +10139 chr1 ENSEMBL gene 181771566 181771644 79.0 + 0 ENSG00000252977.1 rRNA_pseudogene RNA5SP70 3 +10140 chr1 HAVANA gene 181317690 181808084 18271.0 + 0 ENSG00000198216.11 protein_coding CACNA1E 2 OTTHUMG00000037301.8 ncRNA_host +10141 chr1 HAVANA gene 181812705 181813261 557.0 + 0 ENSG00000272880.1 lincRNA AL161734.1 2 OTTHUMG00000186477.1 +10142 chr1 ENSEMBL gene 181839473 181839774 302.0 - 0 ENSG00000222397.1 misc_RNA RN7SKP229 3 +10143 chr1 HAVANA gene 182054570 182061712 3649.0 - 0 ENSG00000179930.5 protein_coding ZNF648 1 OTTHUMG00000037302.1 +10144 chr1 HAVANA gene 182062677 182069253 2463.0 - 0 ENSG00000224810.1 lincRNA AL355482.1 2 OTTHUMG00000037303.1 +10145 chr1 HAVANA gene 182086551 182090112 1145.0 + 0 ENSG00000225982.1 lincRNA AL355482.2 2 OTTHUMG00000037300.1 +10146 chr1 HAVANA gene 182127297 182128682 1019.0 - 0 ENSG00000232309.2 lincRNA AL390856.1 2 OTTHUMG00000037400.2 +10147 chr1 HAVANA gene 182182730 182183096 367.0 - 0 ENSG00000232096.1 processed_pseudogene YPEL5P1 1 OTTHUMG00000037406.1 pseudo_consens,overlapping_locus +10148 chr1 HAVANA gene 182129310 182314061 3161.0 - 0 ENSG00000228918.3 lincRNA LINC01344 2 OTTHUMG00000037403.1 overlapping_locus +10149 chr1 ENSEMBL gene 182327068 182327174 107.0 + 0 ENSG00000206764.1 snRNA RNU6-152P 3 +10150 chr1 HAVANA gene 182328497 182329007 511.0 + 0 ENSG00000228664.1 processed_pseudogene AL513480.1 1 OTTHUMG00000037401.1 pseudo_consens +10151 chr1 HAVANA gene 182336001 182336334 334.0 + 0 ENSG00000231684.3 processed_pseudogene EIF1P3 1 OTTHUMG00000037404.1 pseudo_consens +10152 chr1 HAVANA gene 182381704 182392206 9032.0 - 0 ENSG00000135821.18 protein_coding GLUL 2 OTTHUMG00000037407.3 +10153 chr1 HAVANA gene 182398117 182400616 2500.0 - 0 ENSG00000203730.2 protein_coding TEDDM1 2 OTTHUMG00000037398.1 +10154 chr1 HAVANA gene 182407621 182414815 740.0 + 0 ENSG00000203729.8 lincRNA LINC00272 2 OTTHUMG00000037402.2 +10155 chr1 HAVANA gene 182433893 182434461 195.0 - 0 ENSG00000270443.1 processed_pseudogene AL139344.1 1 OTTHUMG00000184454.1 pseudo_consens +10156 chr1 HAVANA gene 182441577 182442362 786.0 + 0 ENSG00000233537.1 unitary_pseudogene TEDDM2P 2 OTTHUMG00000037405.2 +10157 chr1 HAVANA gene 182409192 182560599 9063.0 + 0 ENSG00000121446.19 protein_coding RGSL1 2 OTTHUMG00000035217.13 +10158 chr1 ENSEMBL gene 182576772 182577040 269.0 - 0 ENSG00000276839.1 misc_RNA RF00017 3 +10159 chr1 HAVANA gene 182573634 182589256 6125.0 - 0 ENSG00000135828.11 protein_coding RNASEL 2 OTTHUMG00000035213.1 ncRNA_host +10160 chr1 HAVANA gene 182598623 182604408 2427.0 - 0 ENSG00000143333.6 protein_coding RGS16 2 OTTHUMG00000035212.1 +10161 chr1 HAVANA gene 182615254 182616629 1376.0 + 0 ENSG00000261504.1 lincRNA LINC01686 2 OTTHUMG00000176155.1 +10162 chr1 HAVANA gene 182641816 182684576 6685.0 - 0 ENSG00000135824.12 protein_coding RGS8 2 OTTHUMG00000035219.6 +10163 chr1 HAVANA gene 182712862 182714544 259.0 + 0 ENSG00000227181.1 lincRNA LINC01688 2 OTTHUMG00000041043.1 +10164 chr1 HAVANA gene 182733792 182734779 408.0 + 0 ENSG00000271269.1 processed_pseudogene AL353778.1 1 OTTHUMG00000184455.1 pseudo_consens +10165 chr1 HAVANA gene 182789293 182830384 4975.0 + 0 ENSG00000135838.13 protein_coding NPL 2 OTTHUMG00000035321.3 +10166 chr1 HAVANA gene 182839369 182887751 5645.0 + 0 ENSG00000135829.16 protein_coding DHX9 2 OTTHUMG00000035337.5 +10167 chr1 HAVANA gene 182942115 182942404 290.0 - 0 ENSG00000224040.1 processed_pseudogene HMGN1P4 1 OTTHUMG00000041119.1 pseudo_consens,overlapping_locus +10168 chr1 ENSEMBL gene 182944365 182944490 126.0 - 0 ENSG00000285609.1 rRNA_pseudogene AL450304.2 3 +10169 chr1 ENSEMBL gene 182944365 182944490 126.0 - 0 ENSG00000199837.1 rRNA RNA5SP71 3 +10170 chr1 HAVANA gene 182899865 182953525 2982.0 - 0 ENSG00000157060.15 protein_coding SHCBP1L 2 OTTHUMG00000035419.4 ncRNA_host,overlapping_locus +10171 chr1 HAVANA gene 182955390 182956148 759.0 - 0 ENSG00000226570.2 processed_pseudogene AL450304.1 2 OTTHUMG00000035416.2 +10172 chr1 HAVANA gene 182959074 182960405 1332.0 - 0 ENSG00000176855.11 processed_pseudogene KRT18P28 1 OTTHUMG00000035417.2 pseudo_consens +10173 chr1 ENSEMBL gene 182982212 182982318 107.0 - 0 ENSG00000207472.1 snRNA RNU6-41P 3 +10174 chr1 HAVANA gene 183138402 183141282 479.0 - 0 ENSG00000224468.3 antisense LAMC1-AS1 2 OTTHUMG00000046152.3 +10175 chr1 HAVANA gene 183023460 183145592 8406.0 + 0 ENSG00000135862.5 protein_coding LAMC1 1 OTTHUMG00000035418.5 +10176 chr1 HAVANA gene 183186238 183244900 6543.0 + 0 ENSG00000058085.14 protein_coding LAMC2 2 OTTHUMG00000035520.3 +10177 chr1 HAVANA gene 183266602 183267285 684.0 + 0 ENSG00000233562.1 processed_pseudogene AL356981.1 1 OTTHUMG00000035518.1 pseudo_consens +10178 chr1 HAVANA gene 183248237 183418602 7165.0 - 0 ENSG00000157064.10 protein_coding NMNAT2 2 OTTHUMG00000035519.2 +10179 chr1 HAVANA gene 183460874 183472265 3383.0 - 0 ENSG00000232860.7 processed_transcript SMG7-AS1 1 OTTHUMG00000035521.3 +10180 chr1 HAVANA gene 183555563 183590876 2928.0 - 0 ENSG00000116701.14 protein_coding NCF2 2 OTTHUMG00000035329.4 +10181 chr1 HAVANA gene 183472216 183598246 8317.0 + 0 ENSG00000116698.21 protein_coding SMG7 1 OTTHUMG00000035221.9 +10182 chr1 HAVANA gene 183620846 183635757 10624.0 - 0 ENSG00000162704.15 protein_coding ARPC5 2 OTTHUMG00000035326.4 +10183 chr1 HAVANA gene 183646404 183653316 2653.0 - 0 ENSG00000173627.7 protein_coding APOBEC4 2 OTTHUMG00000035459.2 +10184 chr1 HAVANA gene 183709305 183710240 936.0 - 0 ENSG00000270994.1 processed_pseudogene AL157899.1 1 OTTHUMG00000184456.1 pseudo_consens +10185 chr1 HAVANA gene 183754418 183754937 364.0 - 0 ENSG00000227554.1 antisense AL590422.1 2 OTTHUMG00000041183.1 +10186 chr1 HAVANA gene 183636085 183928531 5305.0 + 0 ENSG00000143344.15 protein_coding RGL1 2 OTTHUMG00000035328.3 +10187 chr1 HAVANA gene 183929854 184037729 7147.0 - 0 ENSG00000198756.11 protein_coding COLGALT2 2 OTTHUMG00000035460.3 +10188 chr1 HAVANA gene 184051651 184123978 10197.0 + 0 ENSG00000198860.12 protein_coding TSEN15 2 OTTHUMG00000035461.6 +10189 chr1 ENSEMBL gene 184171714 184171823 110.0 - 0 ENSG00000199840.1 misc_RNA RF00019 3 +10190 chr1 ENSEMBL gene 184315658 184315765 108.0 + 0 ENSG00000207080.2 misc_RNA RF00019 3 +10191 chr1 HAVANA gene 184329071 184332826 333.0 + 0 ENSG00000231791.1 lincRNA AL445228.1 2 OTTHUMG00000035458.1 +10192 chr1 ENSEMBL gene 184335658 184335949 292.0 + 0 ENSG00000244568.3 misc_RNA RN7SL654P 3 +10193 chr1 HAVANA gene 184385753 184386704 952.0 - 0 ENSG00000271387.1 lincRNA AL445228.2 2 OTTHUMG00000185159.1 +10194 chr1 HAVANA gene 184408337 184412360 423.0 + 0 ENSG00000230470.1 sense_intronic AL078645.1 2 OTTHUMG00000035468.1 overlapping_locus +10195 chr1 HAVANA gene 184566511 184567835 1325.0 + 0 ENSG00000232036.2 processed_pseudogene AL078645.2 1 OTTHUMG00000035469.2 pseudo_consens,overlapping_locus +10196 chr1 HAVANA gene 184387058 184629020 10971.0 + 0 ENSG00000116667.13 protein_coding C1orf21 2 OTTHUMG00000035386.6 overlapping_locus +10197 chr1 HAVANA gene 184635654 184664303 1677.0 - 0 ENSG00000285847.1 lincRNA AL713852.1 2 OTTHUMG00000192950.1 +10198 chr1 HAVANA gene 184690231 184754913 7804.0 - 0 ENSG00000116406.18 protein_coding EDEM3 2 OTTHUMG00000035387.4 +10199 chr1 ENSEMBL gene 184821428 184821489 62.0 - 0 ENSG00000252222.1 snRNA RNU7-13P 3 +10200 chr1 HAVANA gene 184790724 184974550 8372.0 - 0 ENSG00000135842.16 protein_coding FAM129A 2 OTTHUMG00000035388.2 ncRNA_host +10201 chr1 HAVANA gene 185001527 185008683 1091.0 + 0 ENSG00000260976.1 lincRNA LINC01633 2 OTTHUMG00000176171.1 +10202 chr1 ENSEMBL gene 185014951 185015067 117.0 - 0 ENSG00000201312.1 rRNA_pseudogene RNA5SP72 3 +10203 chr1 HAVANA gene 185071567 185072035 469.0 - 0 ENSG00000232792.2 processed_pseudogene FTH1P25 1 OTTHUMG00000035392.2 pseudo_consens +10204 chr1 HAVANA gene 185045364 185102608 4073.0 + 0 ENSG00000121481.10 protein_coding RNF2 2 OTTHUMG00000035391.2 +10205 chr1 HAVANA gene 185118098 185157072 4945.0 - 0 ENSG00000121486.11 protein_coding TRMT1L 2 OTTHUMG00000035389.2 +10206 chr1 HAVANA gene 185171335 185171710 376.0 - 0 ENSG00000231084.2 processed_pseudogene RPL22P24 1 OTTHUMG00000057655.2 pseudo_consens +10207 chr1 HAVANA gene 185226808 185227700 893.0 - 0 ENSG00000213051.3 processed_pseudogene RPL5P5 1 OTTHUMG00000035382.2 pseudo_consens +10208 chr1 ENSEMBL gene 185251313 185251411 99.0 + 0 ENSG00000201421.1 misc_RNA RF00019 3 +10209 chr1 ENSEMBL gene 185257911 185258015 105.0 - 0 ENSG00000206640.1 misc_RNA RF00019 3 +10210 chr1 HAVANA gene 185262286 185264356 1152.0 - 0 ENSG00000233583.1 processed_pseudogene AL356273.1 2 OTTHUMG00000035383.1 +10211 chr1 ENSEMBL gene 185266535 185266627 93.0 + 0 ENSG00000252612.1 misc_RNA RF00019 3 +10212 chr1 HAVANA gene 185280844 185281816 973.0 + 0 ENSG00000238061.2 processed_pseudogene AL356273.2 1 OTTHUMG00000035385.2 pseudo_consens,overlapping_locus +10213 chr1 HAVANA gene 185157080 185291765 4054.0 + 0 ENSG00000116668.12 protein_coding SWT1 2 OTTHUMG00000035390.2 ncRNA_host,overlapping_locus +10214 chr1 HAVANA gene 185292384 185294372 1989.0 - 0 ENSG00000279838.1 TEC AL356273.3 2 OTTHUMG00000176174.1 +10215 chr1 HAVANA gene 185296388 185317329 7929.0 - 0 ENSG00000116679.15 protein_coding IVNS1ABP 2 OTTHUMG00000035384.1 +10216 chr1 HAVANA gene 185317779 185318530 752.0 + 0 ENSG00000273004.1 lincRNA AL078644.1 2 OTTHUMG00000186480.1 +10217 chr1 HAVANA gene 185321157 185335039 1088.0 - 0 ENSG00000261024.7 transcribed_processed_pseudogene GS1-279B7.1 1 OTTHUMG00000035393.3 pseudo_consens +10218 chr1 ENSEMBL gene 185434244 185434305 62.0 + 0 ENSG00000252407.1 snRNA RNU7-183P 3 +10219 chr1 HAVANA gene 185435839 185436047 209.0 + 0 ENSG00000270920.1 processed_pseudogene MCRIP2P2 1 OTTHUMG00000184457.1 pseudo_consens +10220 chr1 HAVANA gene 185518651 185520986 2336.0 + 0 ENSG00000279401.1 TEC AL133383.2 2 OTTHUMG00000176175.1 +10221 chr1 HAVANA gene 185558372 185628527 1265.0 - 0 ENSG00000228309.6 lincRNA LINC01350 2 OTTHUMG00000035577.2 +10222 chr1 ENSEMBL gene 185630428 185630528 101.0 - 0 ENSG00000207108.1 misc_RNA RF00019 3 +10223 chr1 ENSEMBL gene 185634073 185634182 110.0 - 0 ENSG00000201596.1 misc_RNA RF00019 3 +10224 chr1 HAVANA gene 185655002 185657168 901.0 + 0 ENSG00000261729.1 lincRNA AL133383.1 2 OTTHUMG00000176308.1 +10225 chr1 HAVANA gene 186176814 186177302 353.0 - 0 ENSG00000224691.1 antisense AL133553.1 2 OTTHUMG00000042129.1 +10226 chr1 HAVANA gene 185734551 186190949 18579.0 + 0 ENSG00000143341.11 protein_coding HMCN1 2 OTTHUMG00000059337.3 +10227 chr1 ENSEMBL gene 186311825 186311928 104.0 - 0 ENSG00000202025.1 snRNA RNU6-1240P 3 +10228 chr1 HAVANA gene 186296279 186314562 5044.0 + 0 ENSG00000116690.12 protein_coding PRG4 1 OTTHUMG00000035574.5 +10229 chr1 HAVANA gene 186311652 186375693 12350.0 - 0 ENSG00000047410.13 protein_coding TPR 2 OTTHUMG00000035580.4 ncRNA_host +10230 chr1 HAVANA gene 186400572 186401455 884.0 + 0 ENSG00000262180.1 protein_coding OCLM 2 OTTHUMG00000177601.1 overlapping_locus +10231 chr1 HAVANA gene 186375838 186421378 4073.0 + 0 ENSG00000157181.15 protein_coding ODR4 2 OTTHUMG00000035579.6 overlapping_locus +10232 chr1 HAVANA gene 186443566 186461122 1339.0 - 0 ENSG00000116703.13 protein_coding PDC 2 OTTHUMG00000035575.3 +10233 chr1 HAVANA gene 186435161 186470291 760.0 + 0 ENSG00000229739.2 antisense AL596220.1 2 OTTHUMG00000035581.2 +10234 chr1 HAVANA gene 186521773 186522304 532.0 + 0 ENSG00000273198.1 lincRNA AL096803.3 2 OTTHUMG00000186483.1 +10235 chr1 HAVANA gene 186578279 186579299 1021.0 + 0 ENSG00000228238.1 processed_pseudogene AL096803.1 2 OTTHUMG00000035475.1 +10236 chr1 HAVANA gene 186580515 186581191 677.0 - 0 ENSG00000233196.2 processed_pseudogene AL096803.2 1 OTTHUMG00000035474.2 pseudo_consens +10237 chr1 HAVANA gene 186671791 186680427 5269.0 - 0 ENSG00000073756.11 protein_coding PTGS2 2 OTTHUMG00000035473.3 +10238 chr1 HAVANA gene 186680622 186681446 825.0 + 0 ENSG00000273129.1 lincRNA PACERR 2 OTTHUMG00000186484.1 +10239 chr1 HAVANA gene 186828953 186988981 2875.0 + 0 ENSG00000116711.9 protein_coding PLA2G4A 2 OTTHUMG00000035512.1 +10240 chr1 HAVANA gene 187506838 187507119 260.0 - 0 ENSG00000271558.1 processed_pseudogene AL391813.1 1 OTTHUMG00000184459.1 pseudo_consens +10241 chr1 HAVANA gene 187563061 187564131 1071.0 + 0 ENSG00000225462.1 processed_pseudogene FDPSP1 1 OTTHUMG00000035481.1 pseudo_consens +10242 chr1 HAVANA gene 187632166 187632439 274.0 + 0 ENSG00000274702.1 processed_pseudogene AL357559.1 2 OTTHUMG00000187544.1 +10243 chr1 HAVANA gene 187070700 187686622 10142.0 + 0 ENSG00000230426.3 lincRNA ERVMER61-1 2 OTTHUMG00000035513.2 +10244 chr1 HAVANA gene 187706561 187708898 1259.0 + 0 ENSG00000236401.1 unprocessed_pseudogene SLC4A1APP2 1 OTTHUMG00000035625.1 pseudo_consens +10245 chr1 HAVANA gene 187714243 187714735 493.0 - 0 ENSG00000223847.1 processed_pseudogene AL645474.1 1 OTTHUMG00000035626.1 pseudo_consens +10246 chr1 HAVANA gene 188067298 188067525 228.0 - 0 ENSG00000150732.8 processed_pseudogene AL136372.1 2 OTTHUMG00000047813.2 +10247 chr1 HAVANA gene 188013642 188144763 1401.0 + 0 ENSG00000285894.1 lincRNA AL136372.2 2 OTTHUMG00000193212.2 +10248 chr1 ENSEMBL gene 188155839 188156180 342.0 - 0 ENSG00000222240.1 misc_RNA RN7SKP156 3 +10249 chr1 HAVANA gene 188218400 188220676 2277.0 + 0 ENSG00000261182.1 lincRNA AL596211.1 2 OTTHUMG00000176310.1 +10250 chr1 HAVANA gene 188242139 188242678 540.0 - 0 ENSG00000224278.1 processed_pseudogene AL592447.1 1 OTTHUMG00000035629.1 pseudo_consens +10251 chr1 HAVANA gene 188508538 188536465 746.0 + 0 ENSG00000225006.1 lincRNA AL929288.1 2 OTTHUMG00000035627.1 +10252 chr1 HAVANA gene 188671353 188671759 407.0 + 0 ENSG00000235083.1 processed_pseudogene AL929288.2 2 OTTHUMG00000035628.1 +10253 chr1 HAVANA gene 188694320 188695111 792.0 + 0 ENSG00000231022.1 processed_pseudogene RPS3AP9 1 OTTHUMG00000035541.1 pseudo_consens +10254 chr1 HAVANA gene 188705623 188710880 733.0 - 0 ENSG00000237283.1 lincRNA AL691515.1 2 OTTHUMG00000035544.1 +10255 chr1 HAVANA gene 188869477 188888540 983.0 - 0 ENSG00000238054.2 lincRNA AL691515.2 2 OTTHUMG00000035545.2 +10256 chr1 HAVANA gene 189035961 189036444 484.0 - 0 ENSG00000271036.1 processed_pseudogene CLPTM1LP1 1 OTTHUMG00000184460.1 pseudo_consens +10257 chr1 HAVANA gene 188905688 189037262 784.0 + 0 ENSG00000226486.1 lincRNA LINC01035 2 OTTHUMG00000035542.1 +10258 chr1 HAVANA gene 189132350 189133292 943.0 - 0 ENSG00000226196.1 processed_pseudogene GAPDHP75 1 OTTHUMG00000035543.1 pseudo_consens +10259 chr1 ENSEMBL gene 189666149 189666256 108.0 - 0 ENSG00000252553.1 rRNA_pseudogene RNA5SP73 3 +10260 chr1 HAVANA gene 189775465 189814918 451.0 + 0 ENSG00000232212.1 lincRNA LINC01701 2 OTTHUMG00000035526.1 +10261 chr1 HAVANA gene 189868001 189868528 414.0 - 0 ENSG00000238270.1 lincRNA AL591504.1 2 OTTHUMG00000035527.2 +10262 chr1 HAVANA gene 189989570 189993097 3528.0 - 0 ENSG00000230987.2 processed_pseudogene AL359976.1 1 OTTHUMG00000035525.2 pseudo_consens +10263 chr1 HAVANA gene 190264898 190362270 602.0 + 0 ENSG00000225811.1 antisense AL354771.1 2 OTTHUMG00000035534.1 +10264 chr1 HAVANA gene 190097662 190478404 4287.0 - 0 ENSG00000162670.10 protein_coding BRINP3 2 OTTHUMG00000035533.6 +10265 chr1 HAVANA gene 190478551 190480735 607.0 + 0 ENSG00000237457.6 lincRNA LINC01351 1 OTTHUMG00000035535.1 overlapping_locus +10266 chr1 HAVANA gene 190480379 190494297 506.0 + 0 ENSG00000241505.1 lincRNA AL391645.1 2 OTTHUMG00000040635.1 overlapping_locus +10267 chr1 HAVANA gene 190781787 190781995 209.0 + 0 ENSG00000236025.1 processed_pseudogene AL139135.1 2 OTTHUMG00000035555.1 overlapping_locus +10268 chr1 HAVANA gene 190797524 190797956 433.0 + 0 ENSG00000238108.1 processed_pseudogene AL139135.2 1 OTTHUMG00000035557.1 pseudo_consens,overlapping_locus +10269 chr1 HAVANA gene 190624890 190801658 2216.0 + 0 ENSG00000231175.1 lincRNA LINC01720 2 OTTHUMG00000035556.1 overlapping_locus +10270 chr1 HAVANA gene 191146025 191146961 937.0 - 0 ENSG00000228020.2 processed_pseudogene HNRNPA1P46 1 OTTHUMG00000035529.2 pseudo_consens +10271 chr1 HAVANA gene 190878145 191151410 2438.0 - 0 ENSG00000285638.1 lincRNA AL138927.1 2 OTTHUMG00000192938.1 +10272 chr1 HAVANA gene 191151510 191154634 3125.0 + 0 ENSG00000261642.1 lincRNA AL713866.1 2 OTTHUMG00000176313.1 +10273 chr1 HAVANA gene 191179521 191179739 219.0 - 0 ENSG00000271187.1 processed_pseudogene AL713866.2 1 OTTHUMG00000184461.1 pseudo_consens +10274 chr1 HAVANA gene 191221159 191228467 299.0 - 0 ENSG00000233882.2 lincRNA LINC01680 1 OTTHUMG00000041127.2 +10275 chr1 HAVANA gene 191858707 191890229 780.0 - 0 ENSG00000223344.1 lincRNA AL359081.1 1 OTTHUMG00000041126.1 +10276 chr1 HAVANA gene 191875495 192011260 2051.0 + 0 ENSG00000228215.2 lincRNA AL954650.1 2 OTTHUMG00000041131.2 +10277 chr1 HAVANA gene 192158457 192185815 2806.0 + 0 ENSG00000150681.9 protein_coding RGS18 2 OTTHUMG00000035592.1 +10278 chr1 HAVANA gene 192246708 192247487 780.0 - 0 ENSG00000226723.2 processed_pseudogene AL513175.1 1 OTTHUMG00000035599.2 pseudo_consens +10279 chr1 HAVANA gene 192247505 192247947 443.0 + 0 ENSG00000236792.1 processed_pseudogene AL513175.2 1 OTTHUMG00000035597.1 pseudo_consens +10280 chr1 HAVANA gene 192316992 192367285 1794.0 + 0 ENSG00000253148.1 protein_coding RGS21 2 OTTHUMG00000035594.2 +10281 chr1 HAVANA gene 192517190 192538102 1401.0 + 0 ENSG00000236069.2 lincRNA AL136987.1 2 OTTHUMG00000041136.2 +10282 chr1 HAVANA gene 192575727 192580031 4117.0 + 0 ENSG00000090104.11 protein_coding RGS1 2 OTTHUMG00000035598.3 +10283 chr1 HAVANA gene 192636138 192660306 5923.0 + 0 ENSG00000127074.14 protein_coding RGS13 2 OTTHUMG00000035601.1 +10284 chr1 ENSEMBL gene 192716328 192716390 63.0 + 0 ENSG00000283795.1 miRNA MIR4426 3 +10285 chr1 HAVANA gene 192716132 192716653 522.0 + 0 ENSG00000231767.4 protein_coding AL136454.1 2 OTTHUMG00000035593.2 ncRNA_host,retrogene +10286 chr1 HAVANA gene 192796533 192797205 378.0 + 0 ENSG00000228687.1 unprocessed_pseudogene AL035407.2 2 OTTHUMG00000035596.1 +10287 chr1 HAVANA gene 192800571 192801141 571.0 + 0 ENSG00000226814.2 processed_pseudogene AL035407.1 1 OTTHUMG00000035595.2 pseudo_consens +10288 chr1 HAVANA gene 192809039 192812283 2096.0 + 0 ENSG00000116741.7 protein_coding RGS2 2 OTTHUMG00000035600.2 +10289 chr1 ENSEMBL gene 192875686 192875985 300.0 - 0 ENSG00000223075.1 misc_RNA RN7SKP126 3 +10290 chr1 HAVANA gene 192167786 192957713 9963.0 - 0 ENSG00000285280.1 lincRNA AL390957.1 2 OTTHUMG00000041137.3 ncRNA_host +10291 chr1 HAVANA gene 192993449 192994677 1229.0 - 0 ENSG00000234473.1 processed_pseudogene ZNF101P2 2 OTTHUMG00000035560.1 +10292 chr1 ENSEMBL gene 193057281 193057415 135.0 - 0 ENSG00000238754.1 snoRNA SCARNA18B 3 +10293 chr1 HAVANA gene 193012250 193060080 6661.0 - 0 ENSG00000116750.13 protein_coding UCHL5 2 OTTHUMG00000035561.5 ncRNA_host +10294 chr1 HAVANA gene 193059422 193091777 9102.0 + 0 ENSG00000116747.12 protein_coding TROVE2 1 OTTHUMG00000035675.5 +10295 chr1 HAVANA gene 193090866 193106114 6210.0 - 0 ENSG00000023572.9 protein_coding GLRX2 2 OTTHUMG00000035677.2 +10296 chr1 ENSEMBL gene 193136503 193136583 81.0 + 0 ENSG00000221680.1 miRNA MIR1278 3 +10297 chr1 HAVANA gene 193179045 193186654 3274.0 - 0 ENSG00000162630.5 protein_coding B3GALT2 2 OTTHUMG00000035687.1 +10298 chr1 ENSEMBL gene 193236794 193237107 314.0 - 0 ENSG00000276735.1 misc_RNA RF00017 3 +10299 chr1 HAVANA gene 193121800 193254815 10695.0 + 0 ENSG00000134371.12 protein_coding CDC73 2 OTTHUMG00000035676.8 ncRNA_host +10300 chr1 HAVANA gene 193304745 193365953 779.0 + 0 ENSG00000232077.1 lincRNA LINC01031 2 OTTHUMG00000035686.1 +10301 chr1 HAVANA gene 193684246 193688429 850.0 - 0 ENSG00000237011.1 lincRNA AL357793.2 2 OTTHUMG00000035685.2 +10302 chr1 HAVANA gene 193678894 193727035 401.0 + 0 ENSG00000226640.2 lincRNA AL357793.1 2 OTTHUMG00000035690.2 +10303 chr1 HAVANA gene 193756815 193757267 453.0 - 0 ENSG00000237213.2 processed_pseudogene RPL23AP22 1 OTTHUMG00000035691.2 pseudo_consens +10304 chr1 HAVANA gene 194188967 194190342 1376.0 + 0 ENSG00000233057.1 processed_pseudogene EEF1A1P14 1 OTTHUMG00000035565.1 pseudo_consens,overlapping_locus +10305 chr1 HAVANA gene 194149473 194198694 832.0 + 0 ENSG00000227240.1 lincRNA AL356272.1 2 OTTHUMG00000035564.1 overlapping_locus +10306 chr1 HAVANA gene 194350943 194352426 440.0 + 0 ENSG00000231714.1 lincRNA AL513348.1 2 OTTHUMG00000035603.1 +10307 chr1 ENSEMBL gene 194488103 194488205 103.0 - 0 ENSG00000251813.1 snRNA RNU6-983P 3 +10308 chr1 HAVANA gene 194718795 194719236 442.0 + 0 ENSG00000228167.1 processed_pseudogene AL353072.1 1 OTTHUMG00000035605.1 pseudo_consens +10309 chr1 HAVANA gene 194785517 194931310 580.0 - 0 ENSG00000285718.1 lincRNA AL353072.2 2 OTTHUMG00000192813.1 +10310 chr1 HAVANA gene 196044996 196061073 621.0 - 0 ENSG00000227421.1 lincRNA LINC01724 1 OTTHUMG00000035609.1 +10311 chr1 ENSEMBL gene 196582413 196582481 69.0 - 0 ENSG00000265986.1 miRNA MIR4735 3 +10312 chr1 HAVANA gene 196225779 196609225 7100.0 - 0 ENSG00000162687.17 protein_coding KCNT2 2 OTTHUMG00000035611.5 ncRNA_host +10313 chr1 HAVANA gene 196651878 196747504 8145.0 + 0 ENSG00000000971.15 protein_coding CFH 1 OTTHUMG00000035607.5 +10314 chr1 HAVANA gene 196774795 196795406 3774.0 + 0 ENSG00000116785.13 protein_coding CFHR3 2 OTTHUMG00000035929.7 +10315 chr1 HAVANA gene 196819757 196832189 2197.0 + 0 ENSG00000244414.6 protein_coding CFHR1 2 OTTHUMG00000036276.4 +10316 chr1 HAVANA gene 196850283 196884793 614.0 + 0 ENSG00000285986.1 unprocessed_pseudogene BX248415.1 2 OTTHUMG00000193391.1 +10317 chr1 HAVANA gene 196888014 196918713 2476.0 + 0 ENSG00000134365.13 protein_coding CFHR4 2 OTTHUMG00000036647.4 +10318 chr1 HAVANA gene 196943756 196959226 2336.0 + 0 ENSG00000080910.12 protein_coding CFHR2 2 OTTHUMG00000036518.3 +10319 chr1 HAVANA gene 196970495 196970671 177.0 + 0 ENSG00000273844.1 unprocessed_pseudogene AL139418.1 2 OTTHUMG00000187545.1 +10320 chr1 HAVANA gene 196977556 197009674 2810.0 + 0 ENSG00000134389.9 protein_coding CFHR5 2 OTTHUMG00000036517.2 +10321 chr1 HAVANA gene 197038741 197067267 2900.0 - 0 ENSG00000143278.4 protein_coding F13B 2 OTTHUMG00000036519.3 +10322 chr1 HAVANA gene 197138748 197139307 560.0 - 0 ENSG00000235748.1 processed_pseudogene SEPT14P12 1 OTTHUMG00000057657.1 pseudo_consens,overlapping_locus +10323 chr1 HAVANA gene 197084128 197146694 10887.0 - 0 ENSG00000066279.17 protein_coding ASPM 2 OTTHUMG00000036277.1 overlapping_locus +10324 chr1 HAVANA gene 197153680 197200542 8562.0 - 0 ENSG00000177888.7 protein_coding ZBTB41 2 OTTHUMG00000036275.2 +10325 chr1 HAVANA gene 197222222 197223255 1034.0 + 0 ENSG00000237861.1 processed_pseudogene AL513325.1 1 OTTHUMG00000035660.1 pseudo_consens +10326 chr1 HAVANA gene 197363817 197364078 262.0 + 0 ENSG00000221879.3 processed_pseudogene MRPS21P3 1 OTTHUMG00000035662.2 pseudo_consens,overlapping_locus +10327 chr1 HAVANA gene 197437976 197447469 548.0 - 0 ENSG00000230260.1 antisense AL136322.1 2 OTTHUMG00000141312.1 +10328 chr1 HAVANA gene 197268204 197478455 12721.0 + 0 ENSG00000134376.15 protein_coding CRB1 1 OTTHUMG00000035663.8 overlapping_locus +10329 chr1 ENSEMBL gene 197685640 197685740 101.0 - 0 ENSG00000207139.1 misc_RNA RF00019 3 +10330 chr1 HAVANA gene 197688760 197690627 1347.0 + 0 ENSG00000213046.4 unprocessed_pseudogene EEF1A1P32 1 OTTHUMG00000035652.2 pseudo_consens +10331 chr1 HAVANA gene 197735636 197736107 472.0 + 0 ENSG00000235582.2 processed_pseudogene AL365258.2 2 OTTHUMG00000035651.2 +10332 chr1 HAVANA gene 197746751 197747451 701.0 - 0 ENSG00000233040.2 processed_pseudogene FAM204BP 1 OTTHUMG00000035650.2 pseudo_consens,overlapping_locus +10333 chr1 HAVANA gene 197757319 197761965 247.0 + 0 ENSG00000224901.1 antisense AL365258.1 2 OTTHUMG00000041185.1 +10334 chr1 HAVANA gene 197504748 197775696 13203.0 - 0 ENSG00000213047.12 protein_coding DENND1B 2 OTTHUMG00000035653.6 ncRNA_host,overlapping_locus +10335 chr1 HAVANA gene 197902647 197907367 611.0 + 0 ENSG00000203724.10 protein_coding C1orf53 2 OTTHUMG00000035659.1 +10336 chr1 HAVANA gene 197911902 197935478 10442.0 + 0 ENSG00000143355.15 protein_coding LHX9 1 OTTHUMG00000035656.8 +10337 chr1 HAVANA gene 198197779 198198186 408.0 - 0 ENSG00000232824.1 processed_pseudogene PRR13P1 1 OTTHUMG00000035654.1 pseudo_consens +10338 chr1 HAVANA gene 198156963 198322420 5485.0 + 0 ENSG00000151414.14 protein_coding NEK7 1 OTTHUMG00000035658.6 +10339 chr1 HAVANA gene 198523222 198540945 728.0 - 0 ENSG00000151418.11 protein_coding ATP6V1G3 2 OTTHUMG00000035661.4 +10340 chr1 HAVANA gene 198597724 198598868 363.0 - 0 ENSG00000223881.1 lincRNA AL157402.1 2 OTTHUMG00000035655.1 +10341 chr1 HAVANA gene 198657553 198667061 416.0 - 0 ENSG00000261573.1 antisense AL157402.2 2 OTTHUMG00000035703.1 +10342 chr1 HAVANA gene 198679139 198680033 548.0 - 0 ENSG00000236278.2 processed_pseudogene PEBP1P3 1 OTTHUMG00000035657.2 pseudo_consens +10343 chr1 HAVANA gene 198638457 198757476 9168.0 + 0 ENSG00000081237.19 protein_coding PTPRC 2 OTTHUMG00000035702.10 +10344 chr1 ENSEMBL gene 198858873 198858982 110.0 - 0 ENSG00000207975.1 miRNA MIR181B1 3 +10345 chr1 ENSEMBL gene 198859044 198859153 110.0 - 0 ENSG00000207759.1 miRNA MIR181A1 3 +10346 chr1 HAVANA gene 198807493 198937429 3250.0 - 0 ENSG00000229989.3 lincRNA MIR181A1HG 1 OTTHUMG00000035888.2 ncRNA_host +10347 chr1 HAVANA gene 198949016 198949805 790.0 + 0 ENSG00000227747.2 processed_pseudogene AC096631.2 1 OTTHUMG00000035889.1 pseudo_consens +10348 chr1 HAVANA gene 198983321 198985400 1079.0 + 0 ENSG00000225172.5 lincRNA AC096631.1 2 OTTHUMG00000035890.1 +10349 chr1 HAVANA gene 199006040 199021037 1785.0 - 0 ENSG00000233410.1 lincRNA LINC01222 2 OTTHUMG00000035892.1 +10350 chr1 HAVANA gene 199016133 199076735 662.0 + 0 ENSG00000235492.1 lincRNA LINC01221 2 OTTHUMG00000035893.1 +10351 chr1 HAVANA gene 199371877 199372297 421.0 + 0 ENSG00000228190.2 processed_pseudogene RPL23AP16 1 OTTHUMG00000035886.2 pseudo_consens,overlapping_locus +10352 chr1 HAVANA gene 199387141 199388475 1335.0 + 0 ENSG00000236468.1 processed_pseudogene AC099335.1 1 OTTHUMG00000035887.1 pseudo_consens,overlapping_locus +10353 chr1 HAVANA gene 199148598 199393307 2296.0 + 0 ENSG00000231718.1 lincRNA AC099673.1 2 OTTHUMG00000035891.1 overlapping_locus +10354 chr1 HAVANA gene 199752491 199752890 400.0 + 0 ENSG00000231984.1 processed_pseudogene AL596266.1 1 OTTHUMG00000035917.1 pseudo_consens +10355 chr1 HAVANA gene 199876978 199877558 251.0 + 0 ENSG00000228530.1 processed_pseudogene AL445687.1 1 OTTHUMG00000035915.1 pseudo_consens +10356 chr1 ENSEMBL gene 199888159 199888261 103.0 + 0 ENSG00000200139.1 snRNA RNU6-778P 3 +10357 chr1 HAVANA gene 199908921 199909648 728.0 + 0 ENSG00000229747.1 processed_pseudogene AL445687.2 1 OTTHUMG00000035916.1 pseudo_consens +10358 chr1 ENSEMBL gene 200008505 200008607 103.0 - 0 ENSG00000202491.1 snRNA RNU6-716P 3 +10359 chr1 ENSEMBL gene 200014689 200014795 107.0 - 0 ENSG00000202329.1 snRNA RNU6-609P 3 +10360 chr1 ENSEMBL gene 200054061 200054165 105.0 + 0 ENSG00000252860.1 snRNA RNU6-570P 3 +10361 chr1 HAVANA gene 200147531 200148279 749.0 - 0 ENSG00000229220.1 processed_pseudogene AC096633.1 1 OTTHUMG00000057659.1 pseudo_consens +10362 chr1 HAVANA gene 200027602 200177424 7559.0 + 0 ENSG00000116833.13 protein_coding NR5A2 2 OTTHUMG00000035635.5 ncRNA_host +10363 chr1 HAVANA gene 200213678 200214322 645.0 + 0 ENSG00000233827.2 processed_pseudogene CCNQP1 1 OTTHUMG00000035720.1 pseudo_consens +10364 chr1 HAVANA gene 200315435 200315967 533.0 - 0 ENSG00000273093.1 lincRNA AC097065.2 2 OTTHUMG00000186492.1 +10365 chr1 HAVANA gene 200329161 200329677 517.0 + 0 ENSG00000213045.3 processed_pseudogene AC097065.1 1 OTTHUMG00000035721.1 pseudo_consens +10366 chr1 HAVANA gene 200253419 200400705 3174.0 - 0 ENSG00000203721.6 lincRNA LINC00862 2 OTTHUMG00000035722.3 +10367 chr1 HAVANA gene 200404940 200410056 4895.0 - 0 ENSG00000162702.7 protein_coding ZNF281 2 OTTHUMG00000035724.2 +10368 chr1 HAVANA gene 200333193 200478360 3344.0 + 0 ENSG00000230623.5 processed_transcript AC104461.1 2 OTTHUMG00000035719.4 +10369 chr1 HAVANA gene 200478020 200483604 638.0 - 0 ENSG00000282849.1 lincRNA AL359834.1 2 OTTHUMG00000191481.1 +10370 chr1 HAVANA gene 200551497 200620734 7277.0 - 0 ENSG00000118193.11 protein_coding KIF14 2 OTTHUMG00000035723.1 +10371 chr1 HAVANA gene 200623896 200669969 4470.0 - 0 ENSG00000118197.13 protein_coding DDX59 1 OTTHUMG00000035725.8 +10372 chr1 HAVANA gene 200669507 200694250 736.0 + 0 ENSG00000260088.1 lincRNA AL445483.1 2 OTTHUMG00000035741.1 +10373 chr1 HAVANA gene 200739558 200860704 7777.0 + 0 ENSG00000118200.14 protein_coding CAMSAP2 2 OTTHUMG00000035740.4 +10374 chr1 HAVANA gene 200863808 200864152 345.0 + 0 ENSG00000231333.2 processed_pseudogene RPL34P6 1 OTTHUMG00000035783.2 pseudo_consens +10375 chr1 HAVANA gene 200872955 200874178 1224.0 + 0 ENSG00000170128.4 protein_coding GPR25 2 OTTHUMG00000035788.3 retrogene +10376 chr1 HAVANA gene 200891048 200915735 5413.0 + 0 ENSG00000163362.10 protein_coding INAVA 2 OTTHUMG00000035789.11 +10377 chr1 ENSEMBL gene 200933345 200933447 103.0 - 0 ENSG00000201032.1 snRNA RNU6-704P 3 +10378 chr1 HAVANA gene 200917460 200966668 3061.0 + 0 ENSG00000233217.2 transcribed_unitary_pseudogene MROH3P 2 OTTHUMG00000035782.6 +10379 chr1 HAVANA gene 200969390 201023700 12150.0 - 0 ENSG00000116852.14 protein_coding KIF21B 2 OTTHUMG00000035787.5 +10380 chr1 HAVANA gene 201023949 201028792 3508.0 + 0 ENSG00000229191.1 antisense AL358473.1 2 OTTHUMG00000035785.1 +10381 chr1 HAVANA gene 201031136 201043073 854.0 + 0 ENSG00000234132.2 antisense AL358473.2 2 OTTHUMG00000035786.3 +10382 chr1 HAVANA gene 201039512 201112566 6168.0 - 0 ENSG00000081248.10 protein_coding CACNA1S 2 OTTHUMG00000035784.2 +10383 chr1 HAVANA gene 201113953 201127184 2026.0 - 0 ENSG00000232237.3 protein_coding ASCL5 2 OTTHUMG00000057661.3 +10384 chr1 HAVANA gene 201134772 201171574 3915.0 - 0 ENSG00000116857.16 protein_coding TMEM9 2 OTTHUMG00000035831.7 +10385 chr1 HAVANA gene 201222113 201223123 771.0 - 0 ENSG00000229821.1 antisense AC103925.1 1 OTTHUMG00000040658.1 +10386 chr1 HAVANA gene 201190825 201228952 12116.0 + 0 ENSG00000163395.16 protein_coding IGFN1 2 OTTHUMG00000035728.5 +10387 chr1 HAVANA gene 201283452 201332993 6211.0 + 0 ENSG00000081277.12 protein_coding PKP1 2 OTTHUMG00000035729.3 +10388 chr1 HAVANA gene 201359008 201377762 7259.0 - 0 ENSG00000118194.18 protein_coding TNNT2 2 OTTHUMG00000035733.4 overlapping_locus +10389 chr1 HAVANA gene 201373244 201399915 3482.0 - 0 ENSG00000159166.13 protein_coding LAD1 2 OTTHUMG00000035737.4 overlapping_locus +10390 chr1 HAVANA gene 201399633 201401190 556.0 + 0 ENSG00000282221.1 antisense AC119427.1 2 OTTHUMG00000191432.1 +10391 chr1 HAVANA gene 201428975 201429361 387.0 + 0 ENSG00000227048.2 processed_pseudogene AC096677.3 2 OTTHUMG00000035768.2 +10392 chr1 HAVANA gene 201403768 201429866 7524.0 - 0 ENSG00000159173.18 protein_coding TNNI1 2 OTTHUMG00000035736.6 +10393 chr1 HAVANA gene 201464383 201465146 598.0 - 0 ENSG00000224818.1 3prime_overlapping_ncRNA AC096677.2 2 OTTHUMG00000189503.1 +10394 chr1 HAVANA gene 201464383 201469237 3138.0 - 0 ENSG00000174307.6 protein_coding PHLDA3 2 OTTHUMG00000035767.3 +10395 chr1 HAVANA gene 201483530 201509456 10318.0 - 0 ENSG00000159176.13 protein_coding CSRP1 2 OTTHUMG00000035773.4 +10396 chr1 HAVANA gene 201507241 201534784 1516.0 + 0 ENSG00000224536.2 antisense AC096677.1 2 OTTHUMG00000035772.2 +10397 chr1 HAVANA gene 201518703 201584367 3018.0 + 0 ENSG00000223396.4 transcribed_processed_pseudogene RPS10P7 1 OTTHUMG00000035771.3 pseudo_consens +10398 chr1 HAVANA gene 201673105 201674144 579.0 - 0 ENSG00000236390.1 antisense AC092800.1 1 OTTHUMG00000035804.1 +10399 chr1 ENSEMBL gene 201719508 201719627 120.0 + 0 ENSG00000264802.1 miRNA MIR5191 3 +10400 chr1 ENSEMBL gene 201733406 201733505 100.0 + 0 ENSG00000200942.1 snRNA RNU6-501P 3 +10401 chr1 HAVANA gene 201723294 201737506 1809.0 - 0 ENSG00000235121.1 antisense AL645504.1 2 OTTHUMG00000035769.1 overlapping_locus +10402 chr1 ENSEMBL gene 201808611 201808702 92.0 + 0 ENSG00000221028.1 miRNA MIR1231 3 +10403 chr1 HAVANA gene 201622885 201826969 22453.0 + 0 ENSG00000134369.15 protein_coding NAV1 1 OTTHUMG00000035766.7 ncRNA_host +10404 chr1 HAVANA gene 201688259 201829559 1274.0 - 0 ENSG00000231871.5 antisense IPO9-AS1 1 OTTHUMG00000035809.1 overlapping_locus +10405 chr1 ENSEMBL gene 201863373 201863447 75.0 + 0 ENSG00000277681.1 miRNA MIR6739 3 +10406 chr1 HAVANA gene 201829141 201884294 11915.0 + 0 ENSG00000198700.9 protein_coding IPO9 2 OTTHUMG00000035805.1 ncRNA_host +10407 chr1 HAVANA gene 201888680 201892306 1746.0 + 0 ENSG00000198892.6 protein_coding SHISA4 2 OTTHUMG00000035807.1 +10408 chr1 HAVANA gene 201893842 201899978 671.0 + 0 ENSG00000223774.5 antisense AL513217.1 2 OTTHUMG00000035808.1 +10409 chr1 HAVANA gene 201896452 201946588 3971.0 - 0 ENSG00000163431.12 protein_coding LMOD1 2 OTTHUMG00000035802.2 +10410 chr1 HAVANA gene 201955491 201970661 3513.0 + 0 ENSG00000134375.10 protein_coding TIMM17A 2 OTTHUMG00000035806.1 +10411 chr1 ENSEMBL gene 201978461 201978595 135.0 + 0 ENSG00000206637.1 snoRNA RF00156 3 +10412 chr1 HAVANA gene 201978642 201978949 308.0 + 0 ENSG00000238003.1 processed_pseudogene RPL10P4 2 OTTHUMG00000035803.1 +10413 chr1 ENSEMBL gene 202003124 202003236 113.0 + 0 ENSG00000275207.1 miRNA MIR6740 3 +10414 chr1 HAVANA gene 201982372 202006147 3479.0 + 0 ENSG00000176393.10 protein_coding RNPEP 2 OTTHUMG00000035866.4 ncRNA_host +10415 chr1 HAVANA gene 201995696 202010463 5569.0 - 0 ENSG00000234678.2 antisense ELF3-AS1 2 OTTHUMG00000035865.2 +10416 chr1 HAVANA gene 202011370 202015657 987.0 + 0 ENSG00000249007.1 sense_intronic AL691482.3 1 OTTHUMG00000040657.1 overlapping_locus +10417 chr1 HAVANA gene 202007945 202017188 7191.0 + 0 ENSG00000163435.15 protein_coding ELF3 2 OTTHUMG00000035867.4 overlapping_locus +10418 chr1 HAVANA gene 202028606 202028692 87.0 + 0 ENSG00000232296.1 processed_pseudogene AL691482.1 2 OTTHUMG00000035925.1 +10419 chr1 HAVANA gene 202039851 202039934 84.0 + 0 ENSG00000235811.1 processed_pseudogene AL691482.2 2 OTTHUMG00000035926.1 +10420 chr1 ENSEMBL gene 202070841 202070943 103.0 + 0 ENSG00000212512.2 misc_RNA RF00019 3 +10421 chr1 HAVANA gene 202096759 202096978 220.0 + 0 ENSG00000227109.1 processed_pseudogene CRIP1P3 1 OTTHUMG00000035927.1 pseudo_consens +10422 chr1 HAVANA gene 202122858 202133592 6588.0 + 0 ENSG00000170075.8 protein_coding GPR37L1 2 OTTHUMG00000035924.2 +10423 chr1 HAVANA gene 202133404 202144743 1975.0 - 0 ENSG00000143862.7 protein_coding ARL8A 2 OTTHUMG00000035923.1 +10424 chr1 HAVANA gene 202147013 202161588 5906.0 - 0 ENSG00000143851.15 protein_coding PTPN7 1 OTTHUMG00000035931.7 +10425 chr1 HAVANA gene 202168051 202189455 4378.0 + 0 ENSG00000243323.7 transcribed_unitary_pseudogene PTPRVP 2 OTTHUMG00000040524.3 +10426 chr1 HAVANA gene 202193901 202319781 4583.0 + 0 ENSG00000133067.17 protein_coding LGR6 1 OTTHUMG00000041383.9 +10427 chr1 HAVANA gene 202331657 202341980 1652.0 - 0 ENSG00000077152.10 protein_coding UBE2T 2 OTTHUMG00000041392.5 +10428 chr1 HAVANA gene 202369526 202370145 331.0 - 0 ENSG00000229120.2 processed_pseudogene CYCSP4 1 OTTHUMG00000041382.2 pseudo_consens +10429 chr1 ENSEMBL gene 202410108 202410207 100.0 - 0 ENSG00000272262.1 snRNA RNU6-89P 3 +10430 chr1 HAVANA gene 202438396 202439957 1562.0 + 0 ENSG00000232626.3 transcribed_processed_pseudogene AC099336.1 1 OTTHUMG00000041397.3 pseudo_consens,overlapping_locus +10431 chr1 HAVANA gene 202471864 202472117 254.0 - 0 ENSG00000236439.4 processed_pseudogene AC099336.2 2 OTTHUMG00000041381.2 +10432 chr1 ENSEMBL gene 202527310 202527427 118.0 - 0 ENSG00000253042.1 snoRNA RF00156 3 +10433 chr1 HAVANA gene 202348699 202592706 21069.0 + 0 ENSG00000077157.21 protein_coding PPP1R12B 1 OTTHUMG00000041393.6 overlapping_locus +10434 chr1 HAVANA gene 202604268 202605293 314.0 + 0 ENSG00000226862.1 antisense AC104463.2 2 OTTHUMG00000041394.1 +10435 chr1 HAVANA gene 202632428 202632911 365.0 + 0 ENSG00000225620.1 lincRNA AC104463.1 2 OTTHUMG00000041395.1 +10436 chr1 HAVANA gene 202590596 202710417 7774.0 - 0 ENSG00000143858.11 protein_coding SYT2 2 OTTHUMG00000041388.1 +10437 chr1 HAVANA gene 202767229 202767418 190.0 - 0 ENSG00000235449.2 processed_pseudogene AC098934.3 1 OTTHUMG00000041384.2 pseudo_consens,overlapping_locus +10438 chr1 HAVANA gene 202796030 202797094 1065.0 + 0 ENSG00000226148.1 processed_pseudogene SLC25A39P1 1 OTTHUMG00000041390.1 pseudo_consens +10439 chr1 HAVANA gene 202724495 202809470 25882.0 - 0 ENSG00000117139.17 protein_coding KDM5B 1 OTTHUMG00000041401.11 overlapping_locus +10440 chr1 HAVANA gene 202810238 202810829 592.0 - 0 ENSG00000260021.1 antisense AC098934.4 2 OTTHUMG00000176317.1 +10441 chr1 HAVANA gene 202810954 202812156 890.0 + 0 ENSG00000228288.6 antisense PCAT6 2 OTTHUMG00000041399.2 +10442 chr1 HAVANA gene 202820266 202827225 2810.0 + 0 ENSG00000184774.10 transcribed_unitary_pseudogene MGAT4EP 2 OTTHUMG00000041380.6 +10443 chr1 HAVANA gene 202851828 202861620 2958.0 - 0 ENSG00000214796.8 transcribed_unprocessed_pseudogene AC098934.1 2 OTTHUMG00000041379.1 +10444 chr1 HAVANA gene 202861754 202875241 2321.0 + 0 ENSG00000234996.4 transcribed_processed_pseudogene AC098934.2 1 OTTHUMG00000041386.1 pseudo_consens +10445 chr1 HAVANA gene 202878957 202889135 2430.0 - 0 ENSG00000183155.4 protein_coding RABIF 2 OTTHUMG00000041400.1 +10446 chr1 HAVANA gene 202911812 202912729 918.0 + 0 ENSG00000230280.2 processed_pseudogene HNRNPA1P59 1 OTTHUMG00000041398.2 pseudo_consens +10447 chr1 ENSEMBL gene 202914880 202914980 101.0 - 0 ENSG00000199471.1 misc_RNA RF00019 3 +10448 chr1 HAVANA gene 202891100 202928636 3552.0 - 0 ENSG00000117153.15 protein_coding KLHL12 2 OTTHUMG00000041385.9 ncRNA_host +10449 chr1 HAVANA gene 202940823 202958572 3193.0 - 0 ENSG00000159346.12 protein_coding ADIPOR1 2 OTTHUMG00000041391.9 +10450 chr1 HAVANA gene 202961869 202967280 4504.0 - 0 ENSG00000159348.12 protein_coding CYB5R1 2 OTTHUMG00000041387.3 +10451 chr1 HAVANA gene 202986557 202988582 1239.0 - 0 ENSG00000234761.1 transcribed_unprocessed_pseudogene AC096632.2 2 OTTHUMG00000042049.2 +10452 chr1 HAVANA gene 202999738 203000352 310.0 + 0 ENSG00000231547.1 unprocessed_pseudogene AC096632.1 1 OTTHUMG00000042050.2 pseudo_consens +10453 chr1 HAVANA gene 203007386 203024848 4026.0 + 0 ENSG00000163444.11 protein_coding TMEM183A 2 OTTHUMG00000042051.3 +10454 chr1 HAVANA gene 203026498 203078740 9707.0 + 0 ENSG00000143847.15 protein_coding PPFIA4 1 OTTHUMG00000042123.4 +10455 chr1 HAVANA gene 203083132 203086036 1528.0 - 0 ENSG00000122180.4 protein_coding MYOG 2 OTTHUMG00000042127.1 +10456 chr1 HAVANA gene 203127259 203127954 380.0 - 0 ENSG00000234775.1 antisense AC105940.2 2 OTTHUMG00000043020.1 +10457 chr1 HAVANA gene 203144694 203152579 353.0 - 0 ENSG00000224671.2 antisense AC105940.1 2 OTTHUMG00000043021.2 +10458 chr1 HAVANA gene 203090654 203167405 4191.0 + 0 ENSG00000163485.16 protein_coding ADORA1 2 OTTHUMG00000042125.2 +10459 chr1 HAVANA gene 203167811 203175813 1805.0 - 0 ENSG00000133055.8 protein_coding MYBPH 2 OTTHUMG00000042121.1 +10460 chr1 HAVANA gene 203178931 203186749 3408.0 - 0 ENSG00000133048.12 protein_coding CHI3L1 2 OTTHUMG00000042122.2 +10461 chr1 HAVANA gene 203255743 203256475 733.0 + 0 ENSG00000236523.2 processed_pseudogene NPM1P40 1 OTTHUMG00000042124.2 pseudo_consens +10462 chr1 HAVANA gene 203212827 203273641 7730.0 - 0 ENSG00000133063.15 protein_coding CHIT1 2 OTTHUMG00000042126.4 +10463 chr1 HAVANA gene 203287152 203288801 837.0 + 0 ENSG00000231507.1 lincRNA LINC01353 2 OTTHUMG00000041219.1 +10464 chr1 HAVANA gene 203298758 203305309 2725.0 - 0 ENSG00000233791.5 lincRNA LINC01136 2 OTTHUMG00000035835.2 +10465 chr1 HAVANA gene 203305491 203309602 2757.0 + 0 ENSG00000159388.5 protein_coding BTG2 2 OTTHUMG00000035834.5 +10466 chr1 ENSEMBL gene 203318996 203319099 104.0 - 0 ENSG00000202300.1 snRNA RNU6-487P 3 +10467 chr1 HAVANA gene 203340628 203351758 3401.0 - 0 ENSG00000122176.11 protein_coding FMOD 2 OTTHUMG00000035910.4 +10468 chr1 HAVANA gene 203353365 203353651 287.0 - 0 ENSG00000229652.1 processed_pseudogene AL359837.1 1 OTTHUMG00000035903.1 pseudo_consens +10469 chr1 HAVANA gene 203400266 203400581 316.0 - 0 ENSG00000271588.1 processed_pseudogene LARP7P1 1 OTTHUMG00000184464.1 pseudo_consens +10470 chr1 HAVANA gene 203475828 203491352 5747.0 + 0 ENSG00000188783.5 protein_coding PRELP 2 OTTHUMG00000035911.1 +10471 chr1 HAVANA gene 203494143 203508864 1359.0 + 0 ENSG00000188770.9 protein_coding OPTC 2 OTTHUMG00000036100.3 +10472 chr1 HAVANA gene 203656969 203657760 792.0 - 0 ENSG00000236035.2 processed_pseudogene AL513343.1 1 OTTHUMG00000035904.2 pseudo_consens +10473 chr1 ENSEMBL gene 203729581 203729705 125.0 + 0 ENSG00000221643.1 snoRNA SNORA77 3 +10474 chr1 HAVANA gene 203626561 203744081 9721.0 + 0 ENSG00000058668.14 protein_coding ATP2B4 2 OTTHUMG00000035906.4 ncRNA_host +10475 chr1 HAVANA gene 203765176 203776233 3198.0 + 0 ENSG00000122188.12 protein_coding LAX1 2 OTTHUMG00000035908.3 +10476 chr1 HAVANA gene 203805621 203806263 643.0 - 0 ENSG00000227417.3 processed_pseudogene AC114402.2 1 OTTHUMG00000057666.2 pseudo_consens +10477 chr1 HAVANA gene 203835585 203835912 328.0 - 0 ENSG00000223505.2 processed_pseudogene AC114402.1 1 OTTHUMG00000057667.2 pseudo_consens +10478 chr1 HAVANA gene 203795714 203854999 12481.0 + 0 ENSG00000257315.2 protein_coding ZBED6 2 OTTHUMG00000170422.3 overlapping_locus +10479 chr1 HAVANA gene 203795654 203854999 12798.0 + 0 ENSG00000058673.16 protein_coding ZC3H11A 2 OTTHUMG00000035909.8 overlapping_locus +10480 chr1 HAVANA gene 203861603 203870550 1474.0 + 0 ENSG00000182004.12 protein_coding SNRPE 2 OTTHUMG00000035985.2 +10481 chr1 HAVANA gene 203872574 203874187 1371.0 - 0 ENSG00000236430.1 processed_pseudogene KRT8P29 1 OTTHUMG00000036051.1 pseudo_consens +10482 chr1 HAVANA gene 203903723 203904013 291.0 - 0 ENSG00000232917.5 processed_pseudogene HSPE1P6 1 OTTHUMG00000036052.1 pseudo_consens +10483 chr1 HAVANA gene 203954640 203955780 527.0 + 0 ENSG00000237379.1 processed_pseudogene CBX1P3 1 OTTHUMG00000036053.2 pseudo_consens +10484 chr1 HAVANA gene 204032447 204041265 1891.0 - 0 ENSG00000176754.12 lincRNA LINC00303 2 OTTHUMG00000036054.3 +10485 chr1 HAVANA gene 204073115 204127743 7420.0 + 0 ENSG00000143842.14 protein_coding SOX13 2 OTTHUMG00000036050.6 +10486 chr1 HAVANA gene 204131062 204131966 444.0 + 0 ENSG00000261065.1 antisense AL592146.1 2 OTTHUMG00000036063.1 +10487 chr1 HAVANA gene 204141408 204143009 1126.0 + 0 ENSG00000230550.1 antisense ERLNC1 2 OTTHUMG00000036062.1 +10488 chr1 HAVANA gene 204131062 204152003 4472.0 - 0 ENSG00000143845.14 protein_coding ETNK2 1 OTTHUMG00000036061.6 +10489 chr1 HAVANA gene 204183006 204183537 532.0 + 0 ENSG00000225522.2 processed_pseudogene AL592114.2 1 OTTHUMG00000036055.2 pseudo_consens +10490 chr1 HAVANA gene 204154819 204190324 1734.0 - 0 ENSG00000143839.14 protein_coding REN 2 OTTHUMG00000036059.2 +10491 chr1 HAVANA gene 204190341 204196486 709.0 - 0 ENSG00000170498.8 protein_coding KISS1 2 OTTHUMG00000036060.1 +10492 chr1 HAVANA gene 204198160 204214092 1136.0 - 0 ENSG00000174567.7 protein_coding GOLT1A 2 OTTHUMG00000036056.1 +10493 chr1 HAVANA gene 204277005 204277948 446.0 + 0 ENSG00000231691.1 antisense AL592114.3 2 OTTHUMG00000036058.1 +10494 chr1 HAVANA gene 204346776 204347258 483.0 - 0 ENSG00000219133.2 processed_pseudogene AL592114.1 2 OTTHUMG00000057669.2 overlapping_locus +10495 chr1 HAVANA gene 204368431 204369719 1289.0 - 0 ENSG00000280924.1 lincRNA LINC00628 2 OTTHUMG00000189537.1 +10496 chr1 HAVANA gene 204218851 204377665 8251.0 - 0 ENSG00000143850.14 protein_coding PLEKHA6 1 OTTHUMG00000036057.8 overlapping_locus +10497 chr1 HAVANA gene 204394541 204394774 234.0 + 0 ENSG00000237848.1 processed_pseudogene AL606489.2 2 OTTHUMG00000036104.1 overlapping_locus +10498 chr1 HAVANA gene 204403387 204411791 5227.0 - 0 ENSG00000158615.8 protein_coding PPP1R15B 2 OTTHUMG00000036105.4 +10499 chr1 HAVANA gene 204377850 204435846 486.0 + 0 ENSG00000226330.1 antisense AL606489.1 2 OTTHUMG00000036103.1 overlapping_locus +10500 chr1 HAVANA gene 204422628 204494724 9414.0 - 0 ENSG00000133056.13 protein_coding PIK3C2B 2 OTTHUMG00000036101.4 +10501 chr1 HAVANA gene 204528845 204529692 848.0 - 0 ENSG00000236779.1 processed_pseudogene AL512306.1 1 OTTHUMG00000035988.1 pseudo_consens +10502 chr1 HAVANA gene 204516379 204558120 11008.0 + 0 ENSG00000198625.12 protein_coding MDM4 2 OTTHUMG00000035877.4 +10503 chr1 ENSEMBL gene 204562413 204562521 109.0 - 0 ENSG00000200408.1 rRNA_pseudogene RNA5SP74 3 +10504 chr1 HAVANA gene 204603035 204616565 683.0 + 0 ENSG00000240710.1 antisense AL512306.3 1 OTTHUMG00000037031.1 +10505 chr1 HAVANA gene 204626775 204629712 2219.0 + 0 ENSG00000240219.1 lincRNA AL512306.2 2 OTTHUMG00000040691.1 +10506 chr1 HAVANA gene 204663872 204664613 445.0 + 0 ENSG00000228153.1 lincRNA AL161793.1 1 OTTHUMG00000037030.1 +10507 chr1 HAVANA gene 204617170 204685733 5681.0 - 0 ENSG00000170382.11 protein_coding LRRN2 2 OTTHUMG00000035989.2 +10508 chr1 ENSEMBL gene 204707320 204707430 111.0 - 0 ENSG00000252650.1 rRNA_pseudogene RNA5SP75 3 +10509 chr1 ENSEMBL gene 204727991 204728106 116.0 + 0 ENSG00000251861.1 scaRNA RF00601 3 +10510 chr1 HAVANA gene 204946608 204947169 562.0 + 0 ENSG00000229657.2 processed_pseudogene AL391822.1 1 OTTHUMG00000059191.2 pseudo_consens,overlapping_locus +10511 chr1 HAVANA gene 204828651 205022822 21271.0 + 0 ENSG00000163531.15 protein_coding NFASC 2 OTTHUMG00000151697.3 overlapping_locus +10512 chr1 HAVANA gene 205042937 205078284 17785.0 + 0 ENSG00000184144.11 protein_coding CNTN2 2 OTTHUMG00000037105.38 +10513 chr1 HAVANA gene 205083129 205084460 1332.0 - 0 ENSG00000174529.7 protein_coding TMEM81 2 OTTHUMG00000037103.1 +10514 chr1 HAVANA gene 205091163 205091946 784.0 + 0 ENSG00000271580.1 processed_pseudogene AL583832.1 1 OTTHUMG00000184465.1 pseudo_consens +10515 chr1 HAVANA gene 205086142 205122015 4404.0 - 0 ENSG00000117222.13 protein_coding RBBP5 2 OTTHUMG00000037104.1 +10516 chr1 HAVANA gene 205134646 205134950 305.0 + 0 ENSG00000236108.1 processed_pseudogene AC093422.3 1 OTTHUMG00000037100.1 pseudo_consens +10517 chr1 HAVANA gene 205202191 205202742 552.0 + 0 ENSG00000213041.4 processed_pseudogene AC093422.1 1 OTTHUMG00000037194.2 pseudo_consens +10518 chr1 HAVANA gene 205142505 205211566 8339.0 - 0 ENSG00000133059.16 protein_coding DSTYK 2 OTTHUMG00000037102.3 +10519 chr1 HAVANA gene 205233821 205236867 686.0 - 0 ENSG00000225063.1 antisense AC093422.2 1 OTTHUMG00000040690.1 +10520 chr1 HAVANA gene 205228176 205285632 5592.0 + 0 ENSG00000133069.16 protein_coding TMCC2 2 OTTHUMG00000037195.5 +10521 chr1 HAVANA gene 205302059 205321791 3441.0 - 0 ENSG00000163545.8 protein_coding NUAK2 2 OTTHUMG00000037196.2 +10522 chr1 HAVANA gene 205351247 205351471 225.0 + 0 ENSG00000235363.1 processed_pseudogene SNRPGP10 1 OTTHUMG00000037198.1 pseudo_consens +10523 chr1 HAVANA gene 205336065 205357090 3651.0 - 0 ENSG00000162873.14 protein_coding KLHDC8A 2 OTTHUMG00000037199.6 +10524 chr1 HAVANA gene 205373252 205387440 2781.0 + 0 ENSG00000226235.1 antisense LEMD1-AS1 2 OTTHUMG00000037200.1 +10525 chr1 HAVANA gene 205434886 205437879 2994.0 - 0 ENSG00000281406.1 lincRNA BLACAT1 2 OTTHUMG00000189561.1 overlapping_locus +10526 chr1 ENSEMBL gene 205448302 205448398 97.0 - 0 ENSG00000199059.3 miRNA MIR135B 3 +10527 chr1 HAVANA gene 205381378 205457091 2199.0 - 0 ENSG00000186007.9 protein_coding LEMD1 2 OTTHUMG00000037201.3 ncRNA_host +10528 chr1 HAVANA gene 205455929 205469024 2885.0 + 0 ENSG00000224717.1 lincRNA AC098936.1 2 OTTHUMG00000037202.1 +10529 chr1 HAVANA gene 205504595 205532793 6831.0 + 0 ENSG00000117266.15 protein_coding CDK18 1 OTTHUMG00000037203.6 +10530 chr1 ENSEMBL gene 205566716 205566799 84.0 + 0 ENSG00000253097.1 snRNA RNU2-19P 3 +10531 chr1 ENSEMBL gene 205595041 205595147 107.0 + 0 ENSG00000206762.1 snRNA RNU6-418P 3 +10532 chr1 HAVANA gene 205568885 205602918 5790.0 + 0 ENSG00000174514.12 protein_coding MFSD4A 2 OTTHUMG00000037197.4 ncRNA_host +10533 chr1 HAVANA gene 205625483 205626153 353.0 + 0 ENSG00000236942.1 processed_pseudogene AC096533.1 1 OTTHUMG00000037222.1 pseudo_consens +10534 chr1 HAVANA gene 205597556 205631962 12142.0 - 0 ENSG00000158711.13 protein_coding ELK4 2 OTTHUMG00000037221.3 +10535 chr1 HAVANA gene 205657851 205680459 3702.0 - 0 ENSG00000158715.5 protein_coding SLC45A3 2 OTTHUMG00000037223.1 +10536 chr1 ENSEMBL gene 205684018 205684307 290.0 + 0 ENSG00000275213.1 misc_RNA RF00017 3 +10537 chr1 ENSEMBL gene 205731221 205731352 132.0 - 0 ENSG00000201944.1 snoRNA RF00139 3 +10538 chr1 HAVANA gene 205712819 205750276 6546.0 - 0 ENSG00000069275.12 protein_coding NUCKS1 2 OTTHUMG00000035996.1 ncRNA_host +10539 chr1 HAVANA gene 205767986 205775460 3882.0 - 0 ENSG00000117280.12 protein_coding RAB29 2 OTTHUMG00000035998.3 +10540 chr1 HAVANA gene 205775559 205783623 1155.0 + 0 ENSG00000285521.1 bidirectional_promoter_lncRNA AC119673.1 2 OTTHUMG00000193229.2 +10541 chr1 HAVANA gene 205789093 205813748 6357.0 - 0 ENSG00000133065.10 protein_coding SLC41A1 2 OTTHUMG00000036000.3 +10542 chr1 HAVANA gene 205828022 205850132 2614.0 - 0 ENSG00000162877.12 protein_coding PM20D1 1 OTTHUMG00000035999.1 +10543 chr1 HAVANA gene 205935128 205935768 230.0 + 0 ENSG00000227687.1 antisense AL713965.1 2 OTTHUMG00000041669.1 +10544 chr1 HAVANA gene 205913048 205943460 5628.0 - 0 ENSG00000174502.18 protein_coding SLC26A9 2 OTTHUMG00000036001.2 +10545 chr1 HAVANA gene 205976740 206003461 3686.0 - 0 ENSG00000276600.4 protein_coding RAB7B 2 OTTHUMG00000189246.1 +10546 chr1 HAVANA gene 206009264 206023909 2671.0 - 0 ENSG00000196188.10 protein_coding CTSE 2 OTTHUMG00000036121.1 +10547 chr1 HAVANA gene 206035253 206062257 2076.0 + 0 ENSG00000285417.1 transcribed_unitary_pseudogene BX571818.1 2 OTTHUMG00000184376.4 overlapping_locus +10548 chr1 ENSEMBL gene 206080239 206080324 86.0 + 0 ENSG00000252692.1 snoRNA RF00271 3 +10549 chr1 HAVANA gene 206052723 206102459 2181.0 + 0 ENSG00000263961.7 protein_coding RHEX 2 OTTHUMG00000192556.1 ncRNA_host,overlapping_locus +10550 chr1 HAVANA gene 206109692 206117699 2273.0 - 0 ENSG00000198049.6 protein_coding AVPR1B 2 OTTHUMG00000184377.1 +10551 chr1 HAVANA gene 206117783 206126805 630.0 + 0 ENSG00000226780.1 antisense AC244035.1 2 OTTHUMG00000036120.1 +10552 chr1 HAVANA gene 206160887 206161276 390.0 - 0 ENSG00000225483.1 processed_pseudogene RPL22P4 1 OTTHUMG00000036118.1 pseudo_consens +10553 chr1 HAVANA gene 206175060 206177246 271.0 - 0 ENSG00000236889.1 lincRNA AC244035.2 2 OTTHUMG00000036117.1 +10554 chr1 HAVANA gene 206186179 206204414 3783.0 - 0 ENSG00000196550.10 protein_coding FAM72A 2 OTTHUMG00000042552.3 +10555 chr1 HAVANA gene 206333327 206333438 112.0 - 0 ENSG00000229509.1 unprocessed_pseudogene AC244023.1 1 OTTHUMG00000043621.1 pseudo_consens +10556 chr1 HAVANA gene 206203345 206464443 15675.0 + 0 ENSG00000266028.7 protein_coding SRGAP2 2 OTTHUMG00000184381.5 +10557 chr1 ENSEMBL gene 206474803 206474864 62.0 + 0 ENSG00000278465.1 miRNA MIR6769B 3 +10558 chr1 HAVANA gene 206470476 206496889 3791.0 + 0 ENSG00000263528.7 protein_coding IKBKE 2 OTTHUMG00000184613.2 ncRNA_host +10559 chr1 HAVANA gene 206491116 206497728 2096.0 - 0 ENSG00000162888.4 antisense C1orf147 2 OTTHUMG00000036338.1 +10560 chr1 HAVANA gene 206503948 206504456 509.0 + 0 ENSG00000261000.1 lincRNA AC244034.2 2 OTTHUMG00000176318.1 +10561 chr1 HAVANA gene 206528915 206529706 792.0 + 0 ENSG00000234981.1 processed_pseudogene AC244034.1 1 OTTHUMG00000036340.1 pseudo_consens,overlapping_locus +10562 chr1 HAVANA gene 206541758 206544892 3135.0 + 0 ENSG00000279946.1 TEC AC244034.3 2 OTTHUMG00000184618.1 overlapping_locus +10563 chr1 HAVANA gene 206507530 206589448 6976.0 + 0 ENSG00000266094.7 protein_coding RASSF5 2 OTTHUMG00000184616.2 overlapping_locus +10564 chr1 HAVANA gene 206571292 206612463 8064.0 - 0 ENSG00000143486.15 protein_coding EIF2D 1 OTTHUMG00000184619.2 +10565 chr1 HAVANA gene 206634649 206635622 358.0 - 0 ENSG00000237605.1 antisense AL591846.2 2 OTTHUMG00000036345.1 +10566 chr1 HAVANA gene 206635536 206684419 4218.0 + 0 ENSG00000143479.16 protein_coding DYRK3 2 OTTHUMG00000036339.4 +10567 chr1 HAVANA gene 206695837 206696269 433.0 - 0 ENSG00000224114.1 processed_pseudogene AL591846.1 1 OTTHUMG00000036341.2 pseudo_consens +10568 chr1 HAVANA gene 206684944 206734283 4195.0 + 0 ENSG00000162889.10 protein_coding MAPKAPK2 2 OTTHUMG00000036342.2 +10569 chr1 ENSEMBL gene 206747980 206748092 113.0 - 0 ENSG00000199349.1 misc_RNA RF00019 3 +10570 chr1 HAVANA gene 206767602 206772494 1978.0 - 0 ENSG00000136634.6 protein_coding IL10 2 OTTHUMG00000036386.5 +10571 chr1 HAVANA gene 206798870 206842981 2587.0 + 0 ENSG00000142224.15 protein_coding IL19 2 OTTHUMG00000036387.5 +10572 chr1 HAVANA gene 206865354 206869223 1567.0 + 0 ENSG00000162891.10 protein_coding IL20 2 OTTHUMG00000036456.1 +10573 chr1 HAVANA gene 206897443 206904139 1979.0 + 0 ENSG00000162892.15 protein_coding IL24 2 OTTHUMG00000036459.3 +10574 chr1 HAVANA gene 206905928 206906393 466.0 + 0 ENSG00000271680.1 processed_pseudogene AC098935.2 1 OTTHUMG00000184466.1 pseudo_consens +10575 chr1 HAVANA gene 206907619 206908229 611.0 + 0 ENSG00000226945.1 processed_pseudogene AC098935.1 1 OTTHUMG00000036458.1 pseudo_consens +10576 chr1 HAVANA gene 206904386 206923247 2348.0 - 0 ENSG00000162894.11 protein_coding FCMR 2 OTTHUMG00000036457.5 +10577 chr1 HAVANA gene 206928518 206946466 4376.0 - 0 ENSG00000162896.5 protein_coding PIGR 2 OTTHUMG00000036581.1 +10578 chr1 HAVANA gene 206957965 206970625 3541.0 - 0 ENSG00000162897.14 protein_coding FCAMR 2 OTTHUMG00000036579.3 +10579 chr1 HAVANA gene 207018521 207032756 5502.0 - 0 ENSG00000182795.12 protein_coding C1orf116 1 OTTHUMG00000036580.2 +10580 chr1 HAVANA gene 207043849 207052980 6521.0 - 0 ENSG00000180667.10 protein_coding YOD1 2 OTTHUMG00000036032.2 +10581 chr1 HAVANA gene 207034366 207081024 10197.0 + 0 ENSG00000123836.14 protein_coding PFKFB2 2 OTTHUMG00000036033.3 +10582 chr1 HAVANA gene 207088842 207099993 3219.0 + 0 ENSG00000123843.12 protein_coding C4BPB 2 OTTHUMG00000036035.8 +10583 chr1 HAVANA gene 207127010 207127486 477.0 - 0 ENSG00000275392.1 antisense AL445493.3 2 OTTHUMG00000186516.1 +10584 chr1 HAVANA gene 207104262 207144972 2441.0 + 0 ENSG00000123838.10 protein_coding C4BPA 2 OTTHUMG00000036173.5 +10585 chr1 HAVANA gene 207150205 207150281 77.0 - 0 ENSG00000226565.2 processed_pseudogene AL445493.1 2 OTTHUMG00000036187.2 +10586 chr1 HAVANA gene 207165496 207183910 1893.0 + 0 ENSG00000224462.2 unprocessed_pseudogene C4BPAP1 2 OTTHUMG00000036251.1 overlapping_locus +10587 chr1 HAVANA gene 207179296 207184062 945.0 + 0 ENSG00000243636.1 lincRNA AL445493.2 2 OTTHUMG00000036253.1 overlapping_locus +10588 chr1 HAVANA gene 207225798 207229202 478.0 + 0 ENSG00000232621.1 unprocessed_pseudogene C4BPAP2 2 OTTHUMG00000036252.1 +10589 chr1 HAVANA gene 207240122 207309292 1264.0 + 0 ENSG00000237074.2 lincRNA AL596218.1 2 OTTHUMG00000036254.2 +10590 chr1 HAVANA gene 207321376 207386804 5908.0 + 0 ENSG00000196352.15 protein_coding CD55 1 OTTHUMG00000036255.7 +10591 chr1 HAVANA gene 207401691 207416236 479.0 - 0 ENSG00000283044.1 lincRNA AL391597.1 2 OTTHUMG00000191569.1 +10592 chr1 HAVANA gene 207454230 207489895 4885.0 + 0 ENSG00000117322.17 protein_coding CR2 1 OTTHUMG00000036307.2 +10593 chr1 HAVANA gene 207551925 207606555 1506.0 - 0 ENSG00000236911.6 antisense AL137789.1 2 OTTHUMG00000041089.3 +10594 chr1 HAVANA gene 207496147 207641765 12583.0 + 0 ENSG00000203710.11 protein_coding CR1 2 OTTHUMG00000036311.16 +10595 chr1 HAVANA gene 207645234 207657410 763.0 + 0 ENSG00000244703.3 unprocessed_pseudogene CD46P1 2 OTTHUMG00000036355.1 overlapping_locus +10596 chr1 HAVANA gene 207658454 207659142 689.0 + 0 ENSG00000226289.1 unprocessed_pseudogene CDCA4P3 2 OTTHUMG00000057673.1 overlapping_locus +10597 chr1 ENSEMBL gene 207708898 207708981 84.0 - 0 ENSG00000274059.1 rRNA RNA5SP534 3 +10598 chr1 HAVANA gene 207709024 207711508 556.0 - 0 ENSG00000285239.1 antisense AL137789.2 2 OTTHUMG00000192379.1 +10599 chr1 HAVANA gene 207645113 207738416 2768.0 + 0 ENSG00000197721.16 protein_coding CR1L 2 OTTHUMG00000036354.6 overlapping_locus +10600 chr1 HAVANA gene 207762584 207763263 680.0 + 0 ENSG00000234219.1 unprocessed_pseudogene CDCA4P4 2 OTTHUMG00000057675.1 overlapping_locus +10601 chr1 HAVANA gene 207752057 207795513 8708.0 + 0 ENSG00000117335.19 protein_coding CD46 2 OTTHUMG00000036397.15 overlapping_locus +10602 chr1 ENSEMBL gene 207801852 207801939 88.0 - 0 ENSG00000284214.1 miRNA MIR29C 3 +10603 chr1 ENSEMBL gene 207802443 207802523 81.0 - 0 ENSG00000284203.1 miRNA MIR29B2 3 +10604 chr1 HAVANA gene 207801518 207879096 16425.0 - 0 ENSG00000203709.11 lincRNA MIR29B2CHG 2 OTTHUMG00000036553.3 ncRNA_host +10605 chr1 HAVANA gene 207880972 207911402 9219.0 - 0 ENSG00000174059.16 protein_coding CD34 2 OTTHUMG00000036565.2 +10606 chr1 HAVANA gene 207909992 207917088 1950.0 + 0 ENSG00000285719.1 antisense AL356275.2 2 OTTHUMG00000192749.1 +10607 chr1 HAVANA gene 207959292 207969329 7440.0 + 0 ENSG00000284237.1 lincRNA AL356275.1 2 OTTHUMG00000191985.1 +10608 chr1 HAVANA gene 208022242 208244320 13781.0 - 0 ENSG00000076356.6 protein_coding PLXNA2 1 OTTHUMG00000036564.6 +10609 chr1 HAVANA gene 208255290 208255376 87.0 - 0 ENSG00000226843.1 processed_pseudogene AL606753.1 2 OTTHUMG00000036571.1 +10610 chr1 HAVANA gene 208607100 208612192 279.0 - 0 ENSG00000261453.1 lincRNA LINC01735 2 OTTHUMG00000036132.1 +10611 chr1 HAVANA gene 208626741 208628085 285.0 - 0 ENSG00000259815.1 lincRNA AC099793.1 2 OTTHUMG00000036134.1 +10612 chr1 HAVANA gene 208697369 208697698 330.0 - 0 ENSG00000227887.1 processed_pseudogene RPS26P13 1 OTTHUMG00000036135.1 pseudo_consens +10613 chr1 HAVANA gene 208728688 208733184 527.0 + 0 ENSG00000232812.1 lincRNA LINC01717 2 OTTHUMG00000036136.1 +10614 chr1 HAVANA gene 208972454 208975307 595.0 + 0 ENSG00000236950.1 lincRNA LINC01774 2 OTTHUMG00000036137.1 +10615 chr1 HAVANA gene 209001338 209001476 139.0 + 0 ENSG00000278684.1 unprocessed_pseudogene AC104465.1 2 OTTHUMG00000187546.1 +10616 chr1 HAVANA gene 209147267 209155101 473.0 - 0 ENSG00000232537.1 lincRNA AC092810.3 2 OTTHUMG00000036133.1 +10617 chr1 HAVANA gene 209173014 209173375 362.0 + 0 ENSG00000228081.2 processed_pseudogene AC092810.2 1 OTTHUMG00000036165.1 pseudo_consens +10618 chr1 HAVANA gene 209232196 209233419 1224.0 + 0 ENSG00000224540.1 processed_pseudogene AC092810.1 1 OTTHUMG00000036166.1 pseudo_consens +10619 chr1 HAVANA gene 209267798 209268223 426.0 - 0 ENSG00000225712.1 processed_pseudogene ATP5MC2P1 1 OTTHUMG00000036167.1 pseudo_consens +10620 chr1 HAVANA gene 209325456 209328532 492.0 + 0 ENSG00000227940.1 lincRNA LINC01696 2 OTTHUMG00000036265.1 +10621 chr1 HAVANA gene 209367662 209379690 892.0 + 0 ENSG00000231648.1 lincRNA LINC01698 2 OTTHUMG00000036266.1 +10622 chr1 ENSEMBL gene 209432133 209432242 110.0 + 0 ENSG00000284485.1 miRNA MIR205 3 +10623 chr1 HAVANA gene 209428820 209432838 3518.0 + 0 ENSG00000230937.11 processed_transcript MIR205HG 2 OTTHUMG00000036267.5 ncRNA_host +10624 chr1 HAVANA gene 209528455 209567673 1069.0 - 0 ENSG00000224260.6 lincRNA AL023754.1 2 OTTHUMG00000036359.2 +10625 chr1 HAVANA gene 209583717 209613938 2676.0 + 0 ENSG00000008118.9 protein_coding CAMK1G 1 OTTHUMG00000036361.3 +10626 chr1 ENSEMBL gene 209623444 209623510 67.0 - 0 ENSG00000283876.1 miRNA MIR4260 3 +10627 chr1 HAVANA gene 209614870 209652466 4688.0 - 0 ENSG00000196878.14 protein_coding LAMB3 2 OTTHUMG00000036360.4 ncRNA_host +10628 chr1 HAVANA gene 209675420 209676388 866.0 + 0 ENSG00000123689.5 protein_coding G0S2 2 OTTHUMG00000036479.1 +10629 chr1 HAVANA gene 209661364 209724125 477.0 - 0 ENSG00000227591.5 antisense AL031316.1 2 OTTHUMG00000036478.1 +10630 chr1 HAVANA gene 209686178 209734950 1513.0 + 0 ENSG00000117594.9 protein_coding HSD11B1 2 OTTHUMG00000036481.5 +10631 chr1 HAVANA gene 209744373 209745214 842.0 + 0 ENSG00000236136.1 processed_pseudogene ADORA2BP1 1 OTTHUMG00000036482.1 pseudo_consens +10632 chr1 HAVANA gene 209756032 209782320 7750.0 + 0 ENSG00000009790.14 protein_coding TRAF3IP3 1 OTTHUMG00000036480.7 +10633 chr1 HAVANA gene 209779208 209784559 4684.0 - 0 ENSG00000162757.4 protein_coding C1orf74 2 OTTHUMG00000036483.2 +10634 chr1 HAVANA gene 209785623 209806175 4915.0 - 0 ENSG00000117595.11 protein_coding IRF6 2 OTTHUMG00000036521.3 +10635 chr1 HAVANA gene 209828007 209857565 10376.0 + 0 ENSG00000117597.17 protein_coding UTP25 2 OTTHUMG00000036654.3 +10636 chr1 HAVANA gene 209938174 210171389 13926.0 + 0 ENSG00000143469.18 protein_coding SYT14 2 OTTHUMG00000036652.6 +10637 chr1 HAVANA gene 210231456 210234047 1004.0 - 0 ENSG00000203706.8 antisense SERTAD4-AS1 2 OTTHUMG00000036392.2 +10638 chr1 HAVANA gene 210232799 210246631 5467.0 + 0 ENSG00000082497.11 protein_coding SERTAD4 2 OTTHUMG00000036391.1 +10639 chr1 HAVANA gene 210265636 210267241 1124.0 - 0 ENSG00000228110.4 processed_pseudogene ST13P19 1 OTTHUMG00000036393.3 pseudo_consens +10640 chr1 HAVANA gene 210303684 210304540 857.0 + 0 ENSG00000233455.2 processed_pseudogene AL035414.1 1 OTTHUMG00000036448.2 pseudo_consens +10641 chr1 ENSEMBL gene 210374154 210374267 114.0 - 0 ENSG00000200972.1 snRNA RNU5A-8P 3 +10642 chr1 HAVANA gene 210462345 210463012 668.0 - 0 ENSG00000270936.1 processed_pseudogene AL034351.1 1 OTTHUMG00000184470.1 pseudo_consens +10643 chr1 HAVANA gene 210328252 210676296 6641.0 + 0 ENSG00000054392.12 protein_coding HHAT 2 OTTHUMG00000036447.3 +10644 chr1 HAVANA gene 210678315 210681932 3618.0 + 0 ENSG00000279333.1 TEC AC096636.1 2 OTTHUMG00000176323.1 +10645 chr1 HAVANA gene 210859177 210862285 3109.0 - 0 ENSG00000224668.1 processed_pseudogene IPO8P1 1 OTTHUMG00000036450.1 pseudo_consens,overlapping_locus +10646 chr1 HAVANA gene 211132588 211133374 626.0 - 0 ENSG00000234233.1 sense_intronic KCNH1-IT1 2 OTTHUMG00000046162.1 overlapping_locus +10647 chr1 HAVANA gene 210858125 211134146 4652.0 - 0 ENSG00000284299.1 protein_coding AL590132.1 2 OTTHUMG00000192003.2 overlapping_locus +10648 chr1 HAVANA gene 210676823 211134180 9812.0 - 0 ENSG00000143473.12 protein_coding KCNH1 2 OTTHUMG00000036309.8 overlapping_locus +10649 chr1 HAVANA gene 211173488 211173849 362.0 + 0 ENSG00000234004.4 processed_pseudogene AC092017.2 1 OTTHUMG00000036449.2 pseudo_consens +10650 chr1 HAVANA gene 211082872 211188533 536.0 - 0 ENSG00000283952.1 protein_coding AC092017.3 2 OTTHUMG00000192002.1 overlapping_locus +10651 chr1 HAVANA gene 211108445 211207138 2364.0 - 0 ENSG00000284376.1 sense_overlapping AC092017.4 2 OTTHUMG00000041139.2 overlapping_locus +10652 chr1 HAVANA gene 211207239 211207897 659.0 + 0 ENSG00000226986.4 processed_pseudogene AC092017.1 2 OTTHUMG00000036451.2 +10653 chr1 HAVANA gene 211258377 211316385 9092.0 + 0 ENSG00000117625.13 protein_coding RCOR3 1 OTTHUMG00000036996.4 +10654 chr1 HAVANA gene 211326615 211374946 9022.0 + 0 ENSG00000082512.14 protein_coding TRAF5 2 OTTHUMG00000036997.1 +10655 chr1 HAVANA gene 211417025 211417934 834.0 + 0 ENSG00000236809.2 unprocessed_pseudogene SNX25P1 1 OTTHUMG00000037000.1 pseudo_consens,overlapping_locus +10656 chr1 HAVANA gene 211382803 211435333 4448.0 + 0 ENSG00000153363.12 lincRNA LINC00467 2 OTTHUMG00000036998.4 overlapping_locus +10657 chr1 HAVANA gene 211442274 211442806 533.0 + 0 ENSG00000238137.2 processed_pseudogene ARPC3P2 1 OTTHUMG00000037003.1 pseudo_consens +10658 chr1 HAVANA gene 211492255 211492917 491.0 + 0 ENSG00000223649.1 lincRNA AC105275.1 2 OTTHUMG00000041463.1 +10659 chr1 HAVANA gene 211476522 211492917 4266.0 - 0 ENSG00000198570.5 protein_coding RD3 2 OTTHUMG00000037002.1 +10660 chr1 HAVANA gene 211571568 211578742 5474.0 - 0 ENSG00000170385.9 protein_coding SLC30A1 2 OTTHUMG00000036995.3 +10661 chr1 HAVANA gene 211583015 211583725 711.0 - 0 ENSG00000261314.1 sense_overlapping AC105275.2 2 OTTHUMG00000176327.1 +10662 chr1 HAVANA gene 211635906 211642867 585.0 - 0 ENSG00000228792.2 lincRNA AL356310.1 2 OTTHUMG00000037001.2 +10663 chr1 HAVANA gene 211639695 211654581 1204.0 + 0 ENSG00000227764.1 lincRNA LINC01693 2 OTTHUMG00000036999.1 +10664 chr1 HAVANA gene 211660189 211661277 1089.0 - 0 ENSG00000224763.1 processed_pseudogene FDPSP8 1 OTTHUMG00000037004.1 pseudo_consens +10665 chr1 HAVANA gene 211658657 211675630 3095.0 - 0 ENSG00000117650.12 protein_coding NEK2 2 OTTHUMG00000037121.2 +10666 chr1 HAVANA gene 211675762 211690103 2452.0 + 0 ENSG00000231057.3 antisense AC096637.2 2 OTTHUMG00000037123.2 +10667 chr1 HAVANA gene 211715928 211725402 174.0 - 0 ENSG00000226868.1 lincRNA AC096637.1 2 OTTHUMG00000037125.1 +10668 chr1 ENSEMBL gene 211792111 211792406 296.0 - 0 ENSG00000241395.3 misc_RNA RN7SL344P 3 +10669 chr1 ENSEMBL gene 211803017 211803104 88.0 + 0 ENSG00000212205.1 misc_RNA RF00019 3 +10670 chr1 HAVANA gene 211743457 211830772 8799.0 - 0 ENSG00000123684.12 protein_coding LPGAT1 2 OTTHUMG00000037120.1 ncRNA_host +10671 chr1 HAVANA gene 211829846 211853703 1359.0 + 0 ENSG00000229258.5 antisense AL445488.1 2 OTTHUMG00000037122.1 +10672 chr1 HAVANA gene 211936249 211936634 386.0 + 0 ENSG00000233626.2 processed_pseudogene AC092814.1 1 OTTHUMG00000037118.2 pseudo_consens +10673 chr1 ENSEMBL gene 212025561 212025682 122.0 + 0 ENSG00000212187.1 snoRNA RF00568 3 +10674 chr1 HAVANA gene 211940399 212035542 5311.0 - 0 ENSG00000143493.12 protein_coding INTS7 1 OTTHUMG00000037119.3 +10675 chr1 HAVANA gene 212051524 212052006 483.0 - 0 ENSG00000220749.4 processed_pseudogene RPL21P28 2 OTTHUMG00000037130.1 +10676 chr1 ENSEMBL gene 212077613 212077685 73.0 + 0 ENSG00000264358.1 miRNA MIR3122 3 +10677 chr1 ENSEMBL gene 212099521 212099676 156.0 - 0 ENSG00000252879.1 misc_RNA RN7SKP98 3 +10678 chr1 HAVANA gene 212035553 212107400 4916.0 + 0 ENSG00000143476.17 protein_coding DTL 2 OTTHUMG00000037133.1 ncRNA_host +10679 chr1 HAVANA gene 212168207 212190259 510.0 + 0 ENSG00000229983.1 lincRNA AL606468.1 2 OTTHUMG00000037131.1 +10680 chr1 HAVANA gene 212225278 212238977 511.0 - 0 ENSG00000226251.5 lincRNA AL451060.1 2 OTTHUMG00000037132.1 +10681 chr1 HAVANA gene 212297448 212299579 650.0 + 0 ENSG00000230063.1 sense_intronic AL360091.2 2 OTTHUMG00000041460.1 overlapping_locus +10682 chr1 HAVANA gene 212309051 212309518 468.0 - 0 ENSG00000225338.1 processed_pseudogene RPL23AP18 1 OTTHUMG00000036748.1 pseudo_consens,overlapping_locus +10683 chr1 HAVANA gene 212299495 212331713 387.0 - 0 ENSG00000234915.1 antisense AL360091.3 2 OTTHUMG00000041461.1 overlapping_locus +10684 chr1 ENSEMBL gene 212352816 212352950 135.0 + 0 ENSG00000201544.1 snoRNA SNORA16B 3 +10685 chr1 HAVANA gene 212357418 212358353 496.0 + 0 ENSG00000229832.1 sense_intronic AL360091.1 2 OTTHUMG00000036745.1 overlapping_locus +10686 chr1 HAVANA gene 212285537 212361863 3825.0 + 0 ENSG00000066027.11 protein_coding PPP2R5A 2 OTTHUMG00000036750.4 ncRNA_host,overlapping_locus +10687 chr1 HAVANA gene 212363931 212414901 2914.0 - 0 ENSG00000065600.12 protein_coding TMEM206 2 OTTHUMG00000036751.2 +10688 chr1 HAVANA gene 212432887 212446379 1297.0 + 0 ENSG00000117691.9 protein_coding NENF 2 OTTHUMG00000036744.4 +10689 chr1 HAVANA gene 212466816 212467743 359.0 - 0 ENSG00000224535.1 lincRNA AC092803.1 1 OTTHUMG00000036746.1 +10690 chr1 HAVANA gene 212545694 212556065 332.0 + 0 ENSG00000228067.1 lincRNA LINC01740 2 OTTHUMG00000036749.1 +10691 chr1 HAVANA gene 212557833 212559731 1899.0 - 0 ENSG00000260805.2 lincRNA AC092803.2 2 OTTHUMG00000186548.2 +10692 chr1 HAVANA gene 212565334 212620777 4040.0 + 0 ENSG00000162772.16 protein_coding ATF3 2 OTTHUMG00000036747.8 +10693 chr1 HAVANA gene 212624284 212626771 2225.0 - 0 ENSG00000235862.2 antisense AL590648.2 2 OTTHUMG00000041085.1 +10694 chr1 HAVANA gene 212624474 212626778 2305.0 + 0 ENSG00000162771.7 protein_coding FAM71A 2 OTTHUMG00000041084.1 retrogene +10695 chr1 HAVANA gene 212647296 212647755 460.0 + 0 ENSG00000226036.1 processed_pseudogene AL590648.1 1 OTTHUMG00000036785.1 pseudo_consens +10696 chr1 HAVANA gene 212653999 212665434 473.0 - 0 ENSG00000237980.1 lincRNA AL590648.3 2 OTTHUMG00000036786.1 +10697 chr1 HAVANA gene 212686418 212699985 2713.0 - 0 ENSG00000123685.8 protein_coding BATF3 2 OTTHUMG00000036807.2 +10698 chr1 HAVANA gene 212726153 212791782 4091.0 - 0 ENSG00000117697.14 protein_coding NSL1 2 OTTHUMG00000036806.4 +10699 chr1 HAVANA gene 212791828 212816626 3788.0 + 0 ENSG00000203705.10 protein_coding TATDN3 1 OTTHUMG00000036805.10 +10700 chr1 HAVANA gene 212824027 212824505 479.0 + 0 ENSG00000236905.2 processed_pseudogene AC104333.3 1 OTTHUMG00000036919.2 pseudo_consens +10701 chr1 HAVANA gene 212830141 212847649 506.0 - 0 ENSG00000185523.6 protein_coding SPATA45 2 OTTHUMG00000036920.2 +10702 chr1 HAVANA gene 212853280 212853426 147.0 + 0 ENSG00000235182.1 processed_pseudogene AC104333.1 2 OTTHUMG00000036921.1 +10703 chr1 HAVANA gene 212855175 212855366 192.0 - 0 ENSG00000236317.1 processed_pseudogene AC104333.2 1 OTTHUMG00000036922.1 pseudo_consens,overlapping_locus +10704 chr1 HAVANA gene 212852108 212858088 3094.0 - 0 ENSG00000198468.7 lincRNA FLVCR1-DT 2 OTTHUMG00000036923.2 overlapping_locus +10705 chr1 HAVANA gene 212858255 212899363 6442.0 + 0 ENSG00000162769.12 protein_coding FLVCR1 1 OTTHUMG00000036924.3 +10706 chr1 HAVANA gene 212916787 212917577 554.0 + 0 ENSG00000282718.1 lincRNA AC104333.4 2 OTTHUMG00000191436.1 +10707 chr1 HAVANA gene 212950520 212992037 9086.0 + 0 ENSG00000143494.15 protein_coding VASH2 2 OTTHUMG00000036925.5 +10708 chr1 HAVANA gene 212992182 213015826 7276.0 - 0 ENSG00000174606.13 protein_coding ANGEL2 2 OTTHUMG00000036927.3 +10709 chr1 HAVANA gene 213051233 213274773 6190.0 + 0 ENSG00000136643.11 protein_coding RPS6KC1 2 OTTHUMG00000036926.3 +10710 chr1 HAVANA gene 213428708 213429077 370.0 - 0 ENSG00000228646.3 processed_pseudogene RPL31P13 1 OTTHUMG00000037067.1 pseudo_consens +10711 chr1 HAVANA gene 213492301 213546447 440.0 + 0 ENSG00000225233.1 lincRNA AL592402.1 2 OTTHUMG00000041155.1 +10712 chr1 HAVANA gene 213731416 213794587 347.0 + 0 ENSG00000228255.1 lincRNA AC096639.1 2 OTTHUMG00000041157.1 +10713 chr1 HAVANA gene 213924749 213926654 1906.0 - 0 ENSG00000281664.1 lincRNA LINC00538 2 OTTHUMG00000189733.1 +10714 chr1 HAVANA gene 213983793 213986419 2627.0 - 0 ENSG00000274895.1 antisense AC011700.1 2 OTTHUMG00000187610.1 overlapping_locus +10715 chr1 HAVANA gene 213817751 213988508 10290.0 - 0 ENSG00000230461.8 processed_transcript PROX1-AS1 2 OTTHUMG00000036947.8 +10716 chr1 HAVANA gene 214028891 214030901 2011.0 - 0 ENSG00000272167.2 antisense AL606537.1 2 OTTHUMG00000172502.2 +10717 chr1 HAVANA gene 213983181 214041502 8928.0 + 0 ENSG00000117707.15 protein_coding PROX1 2 OTTHUMG00000036946.8 overlapping_locus +10718 chr1 HAVANA gene 214051194 214187773 2074.0 - 0 ENSG00000283518.1 lincRNA AL592287.1 2 OTTHUMG00000191861.1 +10719 chr1 HAVANA gene 214281102 214337131 4889.0 + 0 ENSG00000143499.13 protein_coding SMYD2 1 OTTHUMG00000037066.4 +10720 chr1 HAVANA gene 214344172 214357615 518.0 - 0 ENSG00000228470.1 sense_overlapping AL929236.1 2 OTTHUMG00000041153.1 overlapping_locus +10721 chr1 HAVANA gene 214482813 214483387 575.0 - 0 ENSG00000213036.3 processed_pseudogene AL445305.1 1 OTTHUMG00000037016.1 pseudo_consens,overlapping_locus +10722 chr1 HAVANA gene 214532195 214533467 1273.0 + 0 ENSG00000215819.3 processed_pseudogene KRT18P12 1 OTTHUMG00000037015.1 pseudo_consens +10723 chr1 HAVANA gene 214348696 214552449 18756.0 - 0 ENSG00000152104.11 protein_coding PTPN14 1 OTTHUMG00000037039.3 overlapping_locus +10724 chr1 HAVANA gene 214605470 214608840 1137.0 - 0 ENSG00000250536.1 unprocessed_pseudogene ABHD17AP3 1 OTTHUMG00000036949.2 pseudo_consens +10725 chr1 HAVANA gene 214612960 214613398 439.0 - 0 ENSG00000224584.2 processed_pseudogene UBE2V1P13 1 OTTHUMG00000036954.2 pseudo_consens +10726 chr1 HAVANA gene 214603195 214664588 11690.0 + 0 ENSG00000117724.12 protein_coding CENPF 2 OTTHUMG00000036955.1 +10727 chr1 HAVANA gene 214870734 214871716 983.0 + 0 ENSG00000185221.6 processed_pseudogene GAPDHP24 1 OTTHUMG00000037014.1 pseudo_consens +10728 chr1 HAVANA gene 214943123 214943540 418.0 + 0 ENSG00000223869.1 processed_pseudogene AC099563.1 2 OTTHUMG00000037012.1 +10729 chr1 HAVANA gene 215005775 215237093 3910.0 + 0 ENSG00000082482.13 protein_coding KCNK2 1 OTTHUMG00000037017.4 +10730 chr1 HAVANA gene 215376484 215377374 891.0 + 0 ENSG00000232809.1 processed_pseudogene VDAC1P10 1 OTTHUMG00000037013.1 pseudo_consens +10731 chr1 HAVANA gene 215393646 215394418 582.0 - 0 ENSG00000282265.1 lincRNA AL450990.1 2 OTTHUMG00000191437.1 +10732 chr1 HAVANA gene 215567392 215621807 4929.0 + 0 ENSG00000136636.12 protein_coding KCTD3 2 OTTHUMG00000037019.3 +10733 chr1 ENSEMBL gene 215630026 215630117 92.0 - 0 ENSG00000202498.1 snoRNA RF00108 3 +10734 chr1 HAVANA gene 215886582 215901464 800.0 + 0 ENSG00000229242.1 antisense AL358452.1 2 OTTHUMG00000037063.1 +10735 chr1 HAVANA gene 216072465 216086917 774.0 + 0 ENSG00000233620.5 antisense AC093581.1 2 OTTHUMG00000037062.2 +10736 chr1 HAVANA gene 216201635 216201826 192.0 - 0 ENSG00000226013.1 processed_pseudogene MRPS18BP1 2 OTTHUMG00000037077.1 overlapping_locus +10737 chr1 HAVANA gene 216194051 216204366 699.0 + 0 ENSG00000236292.1 antisense AC138024.1 2 OTTHUMG00000037078.2 +10738 chr1 HAVANA gene 215622894 216423396 20506.0 - 0 ENSG00000042781.12 protein_coding USH2A 2 OTTHUMG00000037079.5 ncRNA_host,overlapping_locus +10739 chr1 HAVANA gene 216503246 217137755 10912.0 - 0 ENSG00000196482.16 protein_coding ESRRG 1 OTTHUMG00000037025.13 +10740 chr1 HAVANA gene 217426992 217631082 8833.0 - 0 ENSG00000092978.10 protein_coding GPATCH2 2 OTTHUMG00000000527.8 +10741 chr1 HAVANA gene 217781198 217785120 420.0 - 0 ENSG00000234070.1 antisense SPATA17-AS1 2 OTTHUMG00000038051.1 +10742 chr1 HAVANA gene 217850403 217850633 231.0 - 0 ENSG00000228247.1 processed_pseudogene UBBP2 1 OTTHUMG00000038050.1 pseudo_consens +10743 chr1 HAVANA gene 217631324 217871696 6515.0 + 0 ENSG00000162814.10 protein_coding SPATA17 2 OTTHUMG00000037875.6 +10744 chr1 HAVANA gene 217892900 217920804 1584.0 + 0 ENSG00000231814.2 lincRNA LINC00210 2 OTTHUMG00000039497.2 +10745 chr1 HAVANA gene 218031835 218033660 215.0 + 0 ENSG00000230714.1 lincRNA AL355526.1 2 OTTHUMG00000039495.1 +10746 chr1 HAVANA gene 218043505 218059140 1728.0 + 0 ENSG00000232100.1 lincRNA LINC01653 2 OTTHUMG00000039496.1 +10747 chr1 ENSEMBL gene 218129795 218129952 158.0 + 0 ENSG00000201493.1 snRNA RNU1-141P 3 +10748 chr1 HAVANA gene 218301262 218301972 711.0 - 0 ENSG00000229016.1 processed_pseudogene AC096638.2 1 OTTHUMG00000039568.1 pseudo_consens +10749 chr1 HAVANA gene 218285287 218337983 7883.0 + 0 ENSG00000067533.5 protein_coding RRP15 2 OTTHUMG00000039494.4 +10750 chr1 HAVANA gene 218338541 218338756 216.0 + 0 ENSG00000223375.1 processed_pseudogene AC096638.1 1 OTTHUMG00000057823.1 pseudo_consens +10751 chr1 HAVANA gene 218344196 218345678 557.0 - 0 ENSG00000232480.1 antisense TGFB2-AS1 2 OTTHUMG00000039520.1 +10752 chr1 HAVANA gene 218442626 218443996 1371.0 + 0 ENSG00000281453.1 3prime_overlapping_ncRNA TGFB2-OT1 2 OTTHUMG00000189749.1 overlapping_locus +10753 chr1 HAVANA gene 218346235 218444619 5151.0 + 0 ENSG00000092969.11 protein_coding TGFB2 2 OTTHUMG00000039521.2 +10754 chr1 HAVANA gene 218510096 218525978 1003.0 + 0 ENSG00000228208.6 lincRNA C1orf143 2 OTTHUMG00000039569.2 +10755 chr1 ENSEMBL gene 218541690 218541899 210.0 - 0 ENSG00000212610.2 snoRNA RF00012 3 +10756 chr1 HAVANA gene 218881600 218882650 1051.0 - 0 ENSG00000226693.1 processed_pseudogene NXNP1 1 OTTHUMG00000037140.1 pseudo_consens +10757 chr1 HAVANA gene 218912757 218916184 390.0 - 0 ENSG00000225561.1 lincRNA LINC01710 2 OTTHUMG00000041229.1 +10758 chr1 HAVANA gene 219086602 219173961 724.0 - 0 ENSG00000228063.1 antisense LYPLAL1-DT 2 OTTHUMG00000041228.1 +10759 chr1 HAVANA gene 219199914 219200567 654.0 - 0 ENSG00000225920.2 processed_pseudogene RIMKLBP2 1 OTTHUMG00000037142.2 pseudo_consens +10760 chr1 HAVANA gene 219173844 219212865 2966.0 + 0 ENSG00000143353.11 protein_coding LYPLAL1 2 OTTHUMG00000037141.2 +10761 chr1 HAVANA gene 219222248 219225497 1126.0 - 0 ENSG00000223842.1 lincRNA AL360093.1 1 OTTHUMG00000037143.1 +10762 chr1 HAVANA gene 219270774 219273387 2614.0 + 0 ENSG00000277007.1 lincRNA AC096642.1 2 OTTHUMG00000186549.1 +10763 chr1 HAVANA gene 219409523 219459369 1930.0 - 0 ENSG00000228536.2 lincRNA AL513283.1 2 OTTHUMG00000041231.2 +10764 chr1 HAVANA gene 219557192 219557701 182.0 + 0 ENSG00000238232.1 lincRNA AL356364.1 2 OTTHUMG00000041227.1 +10765 chr1 HAVANA gene 219609627 219612062 2436.0 - 0 ENSG00000215817.6 processed_pseudogene ZC3H11B 2 OTTHUMG00000037436.4 +10766 chr1 ENSEMBL gene 219761789 219761875 87.0 + 0 ENSG00000252086.1 rRNA_pseudogene RNA5SP76 3 +10767 chr1 HAVANA gene 219685427 219958647 5770.0 - 0 ENSG00000196660.10 protein_coding SLC30A10 2 OTTHUMG00000037434.3 +10768 chr1 ENSEMBL gene 219962652 219962865 214.0 + 0 ENSG00000221673.2 snoRNA RF00012 3 +10769 chr1 HAVANA gene 219968601 220046658 5450.0 - 0 ENSG00000136628.17 protein_coding EPRS 2 OTTHUMG00000037433.7 +10770 chr1 HAVANA gene 220057482 220090462 3113.0 - 0 ENSG00000162813.17 protein_coding BPNT1 1 OTTHUMG00000037435.5 +10771 chr1 ENSEMBL gene 220117853 220117962 110.0 - 0 ENSG00000207590.1 miRNA MIR215 3 +10772 chr1 ENSEMBL gene 220118157 220118241 85.0 - 0 ENSG00000207624.1 miRNA MIR194-1 3 +10773 chr1 HAVANA gene 220143964 220144351 388.0 - 0 ENSG00000232134.1 processed_pseudogene RPS15AP12 1 OTTHUMG00000037437.1 pseudo_consens +10774 chr1 HAVANA gene 220094102 220148041 4165.0 + 0 ENSG00000067704.9 protein_coding IARS2 2 OTTHUMG00000037287.3 +10775 chr1 ENSEMBL gene 220200538 220200619 82.0 - 0 ENSG00000281696.1 miRNA MIR664A 3 +10776 chr1 ENSEMBL gene 220200546 220200676 131.0 - 0 ENSG00000222370.1 snoRNA SNORA36B 3 +10777 chr1 HAVANA gene 220207618 220208282 665.0 + 0 ENSG00000270585.1 processed_pseudogene AL445435.1 1 OTTHUMG00000184471.1 pseudo_consens +10778 chr1 HAVANA gene 220220291 220220593 303.0 + 0 ENSG00000270708.1 processed_pseudogene KF455155.1 1 OTTHUMG00000184472.2 pseudo_consens +10779 chr1 HAVANA gene 220253570 220254536 967.0 + 0 ENSG00000218283.2 processed_pseudogene MORF4L1P1 1 OTTHUMG00000037285.1 pseudo_consens +10780 chr1 HAVANA gene 220266706 220267917 1212.0 - 0 ENSG00000213033.4 transcribed_processed_pseudogene AURKAP1 1 OTTHUMG00000037286.2 pseudo_consens,overlapping_locus +10781 chr1 HAVANA gene 220148293 220272454 10344.0 - 0 ENSG00000118873.15 protein_coding RAB3GAP2 2 OTTHUMG00000037139.5 ncRNA_host,overlapping_locus +10782 chr1 HAVANA gene 220313945 220315565 1621.0 - 0 ENSG00000230318.2 processed_pseudogene XRCC6P3 1 OTTHUMG00000037093.2 pseudo_consens +10783 chr1 HAVANA gene 220316667 220317599 933.0 - 0 ENSG00000232883.1 processed_pseudogene AL451081.2 1 OTTHUMG00000037092.1 pseudo_consens +10784 chr1 HAVANA gene 220359731 220360183 245.0 - 0 ENSG00000226927.1 lincRNA AL451081.1 2 OTTHUMG00000037358.2 +10785 chr1 HAVANA gene 220401122 220404033 2912.0 + 0 ENSG00000260505.1 lincRNA AC096644.4 2 OTTHUMG00000176320.1 +10786 chr1 HAVANA gene 220448516 220448853 338.0 + 0 ENSG00000235163.2 processed_pseudogene AC096644.3 1 OTTHUMG00000037362.2 pseudo_consens +10787 chr1 HAVANA gene 220455154 220455312 159.0 - 0 ENSG00000234863.1 processed_pseudogene AC096644.2 2 OTTHUMG00000037363.1 +10788 chr1 HAVANA gene 220467954 220468808 540.0 + 0 ENSG00000226226.1 processed_pseudogene PRELID3BP1 1 OTTHUMG00000037349.1 pseudo_consens +10789 chr1 HAVANA gene 220485104 220487043 390.0 - 0 ENSG00000231529.1 lincRNA AC096644.1 2 OTTHUMG00000037350.1 +10790 chr1 ENSEMBL gene 220571739 220572035 297.0 - 0 ENSG00000243872.3 misc_RNA RN7SL464P 3 +10791 chr1 HAVANA gene 220625740 220628056 2006.0 + 0 ENSG00000233012.2 transcribed_processed_pseudogene HDAC1P2 1 OTTHUMG00000037360.2 pseudo_consens,overlapping_locus +10792 chr1 HAVANA gene 220528183 220664461 5417.0 + 0 ENSG00000116141.15 protein_coding MARK1 2 OTTHUMG00000037351.2 overlapping_locus +10793 chr1 HAVANA gene 220689845 220699157 3413.0 + 0 ENSG00000162817.6 protein_coding C1orf115 2 OTTHUMG00000037361.3 +10794 chr1 HAVANA gene 220748225 220784815 2597.0 + 0 ENSG00000117791.15 protein_coding MARC2 2 OTTHUMG00000037354.5 +10795 chr1 HAVANA gene 220786759 220819657 9258.0 + 0 ENSG00000186205.12 protein_coding MARC1 2 OTTHUMG00000037353.5 +10796 chr1 ENSEMBL gene 220825776 220825893 118.0 + 0 ENSG00000276642.1 snRNA RF00619 3 +10797 chr1 HAVANA gene 220825620 220826063 444.0 + 0 ENSG00000221571.3 lincRNA RNU6ATAC35P 2 OTTHUMG00000185888.2 ncRNA_host +10798 chr1 HAVANA gene 220828676 220829211 536.0 - 0 ENSG00000272823.1 lincRNA AL445423.1 2 OTTHUMG00000185889.1 +10799 chr1 HAVANA gene 220829255 220832429 962.0 + 0 ENSG00000238078.1 lincRNA LINC01352 2 OTTHUMG00000037355.1 +10800 chr1 HAVANA gene 220832763 220880140 563.0 - 0 ENSG00000257551.1 antisense HLX-AS1 2 OTTHUMG00000170038.2 +10801 chr1 HAVANA gene 220879400 220885059 5660.0 + 0 ENSG00000136630.12 protein_coding HLX 2 OTTHUMG00000037352.5 +10802 chr1 HAVANA gene 221133865 221134221 357.0 - 0 ENSG00000226211.1 processed_pseudogene AL445466.1 1 OTTHUMG00000037356.1 pseudo_consens +10803 chr1 HAVANA gene 221330080 221336296 4340.0 - 0 ENSG00000234754.1 lincRNA C1orf140 2 OTTHUMG00000037427.2 +10804 chr1 HAVANA gene 221508559 221510979 807.0 + 0 ENSG00000232436.1 lincRNA AL360013.2 2 OTTHUMG00000037165.2 +10805 chr1 HAVANA gene 221549786 221550643 858.0 - 0 ENSG00000227585.2 processed_pseudogene AL360013.1 1 OTTHUMG00000037205.2 pseudo_consens +10806 chr1 HAVANA gene 221701424 221742176 2914.0 - 0 ENSG00000143507.17 protein_coding DUSP10 2 OTTHUMG00000037269.2 +10807 chr1 ENSEMBL gene 221837334 221837437 104.0 - 0 ENSG00000200033.1 snRNA RNU6-403P 3 +10808 chr1 HAVANA gene 221827666 221840666 423.0 - 0 ENSG00000227925.1 lincRNA LINC01655 2 OTTHUMG00000037268.1 ncRNA_host +10809 chr1 HAVANA gene 221880981 221978523 998.0 - 0 ENSG00000238042.5 lincRNA LINC02257 2 OTTHUMG00000037423.1 +10810 chr1 HAVANA gene 221966341 221984964 1366.0 + 0 ENSG00000228437.5 lincRNA LINC02474 2 OTTHUMG00000037424.1 +10811 chr1 HAVANA gene 222041705 222064763 562.0 - 0 ENSG00000232679.1 lincRNA LINC01705 2 OTTHUMG00000037425.1 +10812 chr1 HAVANA gene 222261833 222262796 964.0 - 0 ENSG00000227613.1 processed_pseudogene QRSL1P2 1 OTTHUMG00000037422.1 pseudo_consens,overlapping_locus +10813 chr1 HAVANA gene 222089169 222387434 675.0 - 0 ENSG00000236230.1 lincRNA AL356108.1 2 OTTHUMG00000037290.2 overlapping_locus +10814 chr1 HAVANA gene 222452738 222454705 318.0 - 0 ENSG00000226643.2 lincRNA AL513314.1 2 OTTHUMG00000037291.2 +10815 chr1 HAVANA gene 222468094 222470882 2789.0 + 0 ENSG00000234419.1 processed_pseudogene CICP13 1 OTTHUMG00000037480.1 pseudo_consens +10816 chr1 ENSEMBL gene 222503632 222503735 104.0 - 0 ENSG00000222399.1 snRNA RNU6-791P 3 +10817 chr1 HAVANA gene 222477252 222504622 1588.0 - 0 ENSG00000276997.4 lincRNA AL513314.2 2 OTTHUMG00000186710.1 ncRNA_host +10818 chr1 HAVANA gene 222510169 222519732 372.0 - 0 ENSG00000267305.2 unprocessed_pseudogene AL592148.2 2 OTTHUMG00000187547.1 +10819 chr1 HAVANA gene 222522258 222548103 3289.0 - 0 ENSG00000143512.12 protein_coding HHIPL2 2 OTTHUMG00000037545.3 +10820 chr1 HAVANA gene 222557902 222589933 2895.0 - 0 ENSG00000143498.17 protein_coding TAF1A 2 OTTHUMG00000037544.3 +10821 chr1 HAVANA gene 222589825 222593032 1450.0 + 0 ENSG00000225265.1 antisense TAF1A-AS1 1 OTTHUMG00000037542.1 +10822 chr1 HAVANA gene 222641414 222641858 445.0 - 0 ENSG00000229399.1 processed_pseudogene AL592148.1 1 OTTHUMG00000037652.1 pseudo_consens +10823 chr1 HAVANA gene 222658867 222661512 2646.0 - 0 ENSG00000272750.1 antisense AL592148.3 2 OTTHUMG00000185864.2 +10824 chr1 HAVANA gene 222618086 222668012 10171.0 + 0 ENSG00000154305.16 protein_coding MIA3 2 OTTHUMG00000037543.6 +10825 chr1 HAVANA gene 222668013 222713210 4232.0 - 0 ENSG00000186063.12 protein_coding AIDA 2 OTTHUMG00000037653.2 +10826 chr1 HAVANA gene 222712553 222735196 4980.0 + 0 ENSG00000162819.11 protein_coding BROX 1 OTTHUMG00000037650.3 +10827 chr1 HAVANA gene 222737207 222750805 2603.0 + 0 ENSG00000197520.10 protein_coding FAM177B 2 OTTHUMG00000037766.3 +10828 chr1 HAVANA gene 222815022 222837384 1069.0 + 0 ENSG00000228106.5 lincRNA AL392172.1 1 OTTHUMG00000037767.4 overlapping_locus +10829 chr1 HAVANA gene 222945725 222945900 176.0 + 0 ENSG00000234523.1 processed_pseudogene NDUFB1P2 1 OTTHUMG00000037892.1 pseudo_consens,overlapping_locus +10830 chr1 HAVANA gene 222815064 222994906 564.0 + 0 ENSG00000278610.1 lincRNA AC093152.1 2 OTTHUMG00000186730.1 overlapping_locus +10831 chr1 HAVANA gene 222872271 223005995 5382.0 + 0 ENSG00000154309.8 protein_coding DISP1 2 OTTHUMG00000037893.2 overlapping_locus +10832 chr1 HAVANA gene 223109406 223143282 4608.0 - 0 ENSG00000187554.12 protein_coding TLR5 2 OTTHUMG00000037937.6 +10833 chr1 HAVANA gene 223144049 223144954 613.0 + 0 ENSG00000236846.1 lincRNA AL359979.2 1 OTTHUMG00000037934.2 +10834 chr1 HAVANA gene 223181144 223188154 487.0 + 0 ENSG00000226601.1 lincRNA AL359979.1 2 OTTHUMG00000037935.1 +10835 chr1 HAVANA gene 223220819 223364202 4710.0 - 0 ENSG00000143502.14 protein_coding SUSD4 2 OTTHUMG00000037936.4 +10836 chr1 ENSEMBL gene 223373822 223373956 135.0 + 0 ENSG00000251789.2 snRNA RNU4-57P 3 +10837 chr1 HAVANA gene 223393417 223395470 2054.0 + 0 ENSG00000178395.6 protein_coding CCDC185 2 OTTHUMG00000037987.1 +10838 chr1 HAVANA gene 223644110 223644383 274.0 - 0 ENSG00000227002.2 processed_pseudogene SNRPEP10 1 OTTHUMG00000037377.2 pseudo_consens,overlapping_locus +10839 chr1 HAVANA gene 223538007 223665734 5192.0 - 0 ENSG00000203697.11 protein_coding CAPN8 1 OTTHUMG00000037378.8 fragmented_locus,overlapping_locus +10840 chr1 ENSEMBL gene 223690051 223690114 64.0 + 0 ENSG00000212398.1 snRNA RNU6-1248P 3 +10841 chr1 HAVANA gene 223701593 223776018 8792.0 + 0 ENSG00000162909.17 protein_coding CAPN2 2 OTTHUMG00000037376.4 +10842 chr1 HAVANA gene 223779899 223845972 5991.0 - 0 ENSG00000143514.16 protein_coding TP53BP2 2 OTTHUMG00000037379.4 +10843 chr1 HAVANA gene 223856579 223857387 809.0 - 0 ENSG00000227621.1 processed_pseudogene PHBP11 1 OTTHUMG00000037468.1 pseudo_consens +10844 chr1 HAVANA gene 223863726 223864851 1126.0 - 0 ENSG00000188460.4 processed_pseudogene ACTBP11 1 OTTHUMG00000037470.2 pseudo_consens +10845 chr1 HAVANA gene 223947605 223950416 2215.0 + 0 ENSG00000233771.2 unprocessed_pseudogene CICP5 1 OTTHUMG00000037469.2 pseudo_consens +10846 chr1 ENSEMBL gene 223976146 223976249 104.0 - 0 ENSG00000212157.1 snRNA RNU6-1319P 3 +10847 chr1 HAVANA gene 223951394 223992594 4145.0 - 0 ENSG00000272645.3 transcribed_unprocessed_pseudogene GTF2IP20 2 OTTHUMG00000037471.2 +10848 chr1 HAVANA gene 223994262 223995196 573.0 + 0 ENSG00000278467.1 lincRNA AC138393.3 2 OTTHUMG00000187048.1 overlapping_locus +10849 chr1 HAVANA gene 223992743 224010612 4349.0 + 0 ENSG00000185495.10 transcribed_unprocessed_pseudogene AC138393.1 2 OTTHUMG00000037472.2 overlapping_locus +10850 chr1 HAVANA gene 224030704 224035056 246.0 - 0 ENSG00000229930.1 unprocessed_pseudogene AC138393.2 2 OTTHUMG00000037494.1 +10851 chr1 ENSEMBL gene 224107282 224107541 260.0 - 0 ENSG00000252484.1 misc_RNA RN7SKP49 3 +10852 chr1 HAVANA gene 224114087 224162047 6044.0 + 0 ENSG00000143756.11 protein_coding FBXO28 2 OTTHUMG00000037495.2 +10853 chr1 HAVANA gene 224175476 224175706 231.0 - 0 ENSG00000236773.1 processed_pseudogene AC092809.3 2 OTTHUMG00000037497.1 +10854 chr1 ENSEMBL gene 224179641 224179767 127.0 + 0 ENSG00000201898.1 snoRNA RF00139 3 +10855 chr1 HAVANA gene 224175756 224193441 2515.0 + 0 ENSG00000143753.12 protein_coding DEGS1 2 OTTHUMG00000037496.4 ncRNA_host +10856 chr1 HAVANA gene 224208747 224213279 962.0 - 0 ENSG00000232628.5 sense_intronic AC092809.2 2 OTTHUMG00000037537.1 +10857 chr1 HAVANA gene 224219613 224228043 1323.0 + 0 ENSG00000237101.1 antisense AC092809.4 2 OTTHUMG00000041421.1 +10858 chr1 ENSEMBL gene 224257004 224257141 138.0 - 0 ENSG00000221406.1 miRNA MIR320B2 3 +10859 chr1 HAVANA gene 224297646 224298600 474.0 + 0 ENSG00000229742.1 processed_pseudogene AC092809.1 1 OTTHUMG00000037637.1 pseudo_consens +10860 chr1 ENSEMBL gene 224305380 224305483 104.0 + 0 ENSG00000206887.1 snRNA RNU6-1008P 3 +10861 chr1 HAVANA gene 224227334 224330387 4813.0 - 0 ENSG00000143748.17 protein_coding NVL 1 OTTHUMG00000037536.8 ncRNA_host +10862 chr1 HAVANA gene 224356850 224379459 5098.0 + 0 ENSG00000143771.11 protein_coding CNIH4 2 OTTHUMG00000037635.3 +10863 chr1 ENSEMBL gene 224398227 224398311 85.0 - 0 ENSG00000266618.1 miRNA MIR4742 3 +10864 chr1 HAVANA gene 224385143 224437033 10481.0 - 0 ENSG00000162923.15 protein_coding WDR26 1 OTTHUMG00000037636.5 ncRNA_host +10865 chr1 HAVANA gene 224574434 224575389 956.0 + 0 ENSG00000229991.1 processed_pseudogene AKR1B1P1 1 OTTHUMG00000037720.1 pseudo_consens,overlapping_locus +10866 chr1 HAVANA gene 224611404 224616220 684.0 - 0 ENSG00000233384.2 bidirectional_promoter_lncRNA AC096537.1 1 OTTHUMG00000037718.2 +10867 chr1 HAVANA gene 224661173 224661886 714.0 - 0 ENSG00000234247.1 processed_pseudogene AC096537.2 1 OTTHUMG00000037721.1 pseudo_consens +10868 chr1 HAVANA gene 224717504 224730662 837.0 - 0 ENSG00000229400.1 antisense AL596330.1 1 OTTHUMG00000037717.1 +10869 chr1 HAVANA gene 224434660 224740549 6386.0 + 0 ENSG00000143786.7 protein_coding CNIH3 2 OTTHUMG00000037634.3 overlapping_locus +10870 chr1 HAVANA gene 224766900 224773341 423.0 + 0 ENSG00000225334.1 antisense AL391811.1 2 OTTHUMG00000037716.2 +10871 chr1 HAVANA gene 224896262 225399292 19693.0 + 0 ENSG00000185842.15 protein_coding DNAH14 1 OTTHUMG00000037447.9 +10872 chr1 HAVANA gene 225401502 225428925 5257.0 - 0 ENSG00000143815.14 protein_coding LBR 2 OTTHUMG00000037520.16 +10873 chr1 HAVANA gene 225447243 225465343 992.0 - 0 ENSG00000234476.1 sense_intronic AC092811.1 2 OTTHUMG00000037519.2 +10874 chr1 HAVANA gene 225465021 225473837 559.0 + 0 ENSG00000282418.1 lincRNA AC092811.2 2 OTTHUMG00000191438.1 +10875 chr1 HAVANA gene 225486835 225653142 15044.0 - 0 ENSG00000154380.17 protein_coding ENAH 1 OTTHUMG00000037742.10 +10876 chr1 HAVANA gene 225710968 225736274 534.0 - 0 ENSG00000226349.1 sense_intronic AC099066.1 2 OTTHUMG00000037740.1 +10877 chr1 ENSEMBL gene 225741275 225741380 106.0 + 0 ENSG00000223306.2 snRNA RNU6-1304P 3 +10878 chr1 HAVANA gene 225700604 225752243 1530.0 + 0 ENSG00000227496.1 antisense AC099066.2 2 OTTHUMG00000037739.1 ncRNA_host +10879 chr1 HAVANA gene 225777813 225790466 1728.0 + 0 ENSG00000143742.12 protein_coding SRP9 2 OTTHUMG00000037738.2 +10880 chr1 HAVANA gene 225803148 225803448 301.0 + 0 ENSG00000234112.2 processed_pseudogene AC099066.3 2 OTTHUMG00000037741.2 +10881 chr1 HAVANA gene 225810092 225845563 2508.0 + 0 ENSG00000143819.12 protein_coding EPHX1 2 OTTHUMG00000037743.4 +10882 chr1 HAVANA gene 225840883 225846522 348.0 - 0 ENSG00000242861.1 antisense AL591895.1 2 OTTHUMG00000041221.2 overlapping_locus +10883 chr1 HAVANA gene 225845536 225882369 10339.0 - 0 ENSG00000196187.11 protein_coding TMEM63A 2 OTTHUMG00000037442.4 overlapping_locus +10884 chr1 HAVANA gene 225886282 225911382 1891.0 - 0 ENSG00000243709.1 protein_coding LEFTY1 2 OTTHUMG00000037443.5 overlapping_locus +10885 chr1 ENSEMBL gene 225922080 225922142 63.0 - 0 ENSG00000284519.1 miRNA MIR6741 3 +10886 chr1 HAVANA gene 225886696 225924278 1625.0 - 0 ENSG00000255835.1 protein_coding AL117348.2 2 OTTHUMG00000168659.1 ncRNA_host,overlapping_locus +10887 chr1 HAVANA gene 225919877 225924340 3602.0 - 0 ENSG00000143811.18 protein_coding PYCR2 2 OTTHUMG00000037506.5 ncRNA_host,overlapping_locus +10888 chr1 HAVANA gene 225936411 225937557 342.0 - 0 ENSG00000248322.1 sense_overlapping AL117348.1 2 OTTHUMG00000041338.1 overlapping_locus +10889 chr1 HAVANA gene 225936598 225941489 2392.0 - 0 ENSG00000143768.12 protein_coding LEFTY2 2 OTTHUMG00000037441.1 overlapping_locus +10890 chr1 HAVANA gene 225964179 225964428 250.0 + 0 ENSG00000213032.3 processed_pseudogene NDUFA3P3 1 OTTHUMG00000037505.1 pseudo_consens +10891 chr1 HAVANA gene 225982702 225999331 3975.0 - 0 ENSG00000143751.9 protein_coding SDE2 2 OTTHUMG00000037504.2 +10892 chr1 HAVANA gene 226060712 226061876 490.0 - 0 ENSG00000272562.1 antisense AL512343.2 2 OTTHUMG00000186458.1 +10893 chr1 HAVANA gene 226061851 226072001 3146.0 + 0 ENSG00000163041.9 protein_coding H3F3A 2 OTTHUMG00000037507.1 +10894 chr1 HAVANA gene 226083639 226090292 821.0 + 0 ENSG00000225518.2 lincRNA LINC01703 2 OTTHUMG00000041341.2 +10895 chr1 HAVANA gene 226127178 226127346 169.0 + 0 ENSG00000270598.1 processed_pseudogene AL512343.1 1 OTTHUMG00000184475.1 pseudo_consens +10896 chr1 HAVANA gene 226148003 226155071 535.0 + 0 ENSG00000234478.1 antisense ACBD3-AS1 2 OTTHUMG00000041339.2 +10897 chr1 HAVANA gene 226144679 226186730 3578.0 - 0 ENSG00000182827.8 protein_coding ACBD3 2 OTTHUMG00000037560.2 +10898 chr1 HAVANA gene 226188870 226189221 352.0 - 0 ENSG00000223570.2 processed_pseudogene AL592045.1 1 OTTHUMG00000037561.2 pseudo_consens +10899 chr1 HAVANA gene 226223618 226227054 2029.0 + 0 ENSG00000185155.11 protein_coding MIXL1 2 OTTHUMG00000037558.3 +10900 chr1 HAVANA gene 226231149 226309869 4442.0 - 0 ENSG00000183814.15 protein_coding LIN9 2 OTTHUMG00000037557.4 +10901 chr1 HAVANA gene 226318015 226318693 679.0 - 0 ENSG00000236994.1 processed_pseudogene YBX1P9 2 OTTHUMG00000037559.1 +10902 chr1 HAVANA gene 226331999 226333655 540.0 - 0 ENSG00000275406.1 unprocessed_pseudogene AL359742.1 2 OTTHUMG00000187548.1 +10903 chr1 HAVANA gene 226360691 226408079 7169.0 - 0 ENSG00000143799.12 protein_coding PARP1 2 OTTHUMG00000037556.3 +10904 chr1 HAVANA gene 226411615 226412135 521.0 - 0 ENSG00000270287.1 processed_pseudogene AL359704.2 1 OTTHUMG00000184477.1 pseudo_consens +10905 chr1 HAVANA gene 226438564 226439344 781.0 + 0 ENSG00000229965.1 processed_pseudogene AL359704.1 1 OTTHUMG00000037584.1 pseudo_consens +10906 chr1 ENSEMBL gene 226445937 226446292 356.0 + 0 ENSG00000223282.1 misc_RNA RN7SKP165 3 +10907 chr1 HAVANA gene 226493188 226493489 302.0 - 0 ENSG00000177770.11 processed_pseudogene CDKN2AIPNLP1 1 OTTHUMG00000037585.2 pseudo_consens +10908 chr1 HAVANA gene 226548800 226609214 7791.0 + 0 ENSG00000203685.9 protein_coding STUM 2 OTTHUMG00000037583.1 +10909 chr1 HAVANA gene 226656640 226675067 870.0 - 0 ENSG00000228382.1 sense_intronic ITPKB-IT1 2 OTTHUMG00000037587.1 overlapping_locus +10910 chr1 HAVANA gene 226668897 226676345 538.0 + 0 ENSG00000228548.1 antisense ITPKB-AS1 2 OTTHUMG00000041340.1 +10911 chr1 HAVANA gene 226631690 226739323 7036.0 - 0 ENSG00000143772.9 protein_coding ITPKB 2 OTTHUMG00000037582.1 overlapping_locus +10912 chr1 HAVANA gene 226781501 226781744 244.0 + 0 ENSG00000238183.2 processed_pseudogene RPS27P5 1 OTTHUMG00000037586.2 pseudo_consens +10913 chr1 HAVANA gene 226870184 226896105 3752.0 + 0 ENSG00000143801.16 protein_coding PSEN2 1 OTTHUMG00000037563.6 +10914 chr1 HAVANA gene 226958069 226958267 199.0 - 0 ENSG00000228525.1 processed_pseudogene AL353689.1 2 OTTHUMG00000037617.1 +10915 chr1 HAVANA gene 226897536 226987545 7797.0 + 0 ENSG00000163050.16 protein_coding COQ8A 2 OTTHUMG00000037621.5 +10916 chr1 HAVANA gene 226992140 226993206 440.0 + 0 ENSG00000233706.1 antisense AL353689.2 1 OTTHUMG00000037620.1 +10917 chr1 HAVANA gene 227178333 227183444 814.0 + 0 ENSG00000228625.1 antisense AL451047.1 2 OTTHUMG00000037619.1 +10918 chr1 HAVANA gene 227234269 227235355 821.0 + 0 ENSG00000228729.1 processed_pseudogene AL627308.1 1 OTTHUMG00000037614.1 pseudo_consens +10919 chr1 HAVANA gene 227264776 227265207 432.0 - 0 ENSG00000236636.2 processed_pseudogene AL627308.2 1 OTTHUMG00000037612.2 pseudo_consens,overlapping_locus +10920 chr1 HAVANA gene 226989865 227318474 14055.0 - 0 ENSG00000143776.18 protein_coding CDC42BPA 2 OTTHUMG00000037618.3 overlapping_locus +10921 chr1 HAVANA gene 227410617 227411319 703.0 - 0 ENSG00000232864.1 processed_pseudogene NUCKS1P1 1 OTTHUMG00000037613.1 pseudo_consens +10922 chr1 HAVANA gene 227430526 227430976 451.0 + 0 ENSG00000242757.1 processed_pseudogene AL606462.1 1 OTTHUMG00000037615.1 pseudo_consens,overlapping_locus +10923 chr1 HAVANA gene 227393591 227431035 2273.0 + 0 ENSG00000234277.2 lincRNA LINC01641 2 OTTHUMG00000037611.1 overlapping_locus +10924 chr1 HAVANA gene 227434064 227434346 283.0 + 0 ENSG00000224834.1 processed_pseudogene BTF3P9 1 OTTHUMG00000037616.1 pseudo_consens +10925 chr1 HAVANA gene 227482253 227482454 202.0 + 0 ENSG00000237193.1 processed_pseudogene AL451054.2 2 OTTHUMG00000057825.1 +10926 chr1 HAVANA gene 227490691 227492296 776.0 + 0 ENSG00000278180.1 unprocessed_pseudogene AL451054.3 2 OTTHUMG00000187549.1 +10927 chr1 HAVANA gene 227493029 227495142 1279.0 - 0 ENSG00000237469.2 unprocessed_pseudogene TUBB8P10 1 OTTHUMG00000037622.1 pseudo_consens +10928 chr1 HAVANA gene 227506182 227508292 1276.0 + 0 ENSG00000235827.2 unprocessed_pseudogene TUBB8P9 2 OTTHUMG00000037623.1 +10929 chr1 HAVANA gene 227509028 227510618 772.0 - 0 ENSG00000227711.3 unprocessed_pseudogene AL451054.1 2 OTTHUMG00000037610.2 +10930 chr1 ENSEMBL gene 227561181 227561300 120.0 + 0 ENSG00000202264.1 rRNA_pseudogene RNA5SP77 3 +10931 chr1 HAVANA gene 227598424 227599094 671.0 - 0 ENSG00000225934.2 processed_pseudogene AL592310.1 1 OTTHUMG00000037699.2 pseudo_consens +10932 chr1 HAVANA gene 227563543 227677443 8915.0 + 0 ENSG00000181450.17 protein_coding ZNF678 2 OTTHUMG00000037700.4 +10933 chr1 HAVANA gene 227696892 227706699 1077.0 - 0 ENSG00000215812.5 unprocessed_pseudogene ZNF847P 2 OTTHUMG00000037696.2 +10934 chr1 HAVANA gene 227730425 227735411 4315.0 - 0 ENSG00000081692.12 protein_coding JMJD4 2 OTTHUMG00000037698.3 +10935 chr1 HAVANA gene 227743831 227747191 1708.0 - 0 ENSG00000230005.2 antisense SNAP47-AS1 2 OTTHUMG00000041233.3 +10936 chr1 HAVANA gene 227728539 227781231 6580.0 + 0 ENSG00000143740.14 protein_coding SNAP47 2 OTTHUMG00000037697.5 +10937 chr1 HAVANA gene 227815693 227846470 1267.0 + 0 ENSG00000185888.5 protein_coding PRSS38 2 OTTHUMG00000037701.1 +10938 chr1 ENSEMBL gene 227941590 227941683 94.0 - 0 ENSG00000264483.1 miRNA MIR5008 3 +10939 chr1 HAVANA gene 227918656 227947898 3971.0 - 0 ENSG00000143816.7 protein_coding WNT9A 2 OTTHUMG00000037592.1 ncRNA_host +10940 chr1 HAVANA gene 227975390 227978193 2448.0 - 0 ENSG00000233003.4 unprocessed_pseudogene CICP26 1 OTTHUMG00000057827.2 pseudo_consens +10941 chr1 HAVANA gene 227980051 227980227 177.0 + 0 ENSG00000274886.1 unprocessed_pseudogene SEPT14P17 2 OTTHUMG00000187550.1 +10942 chr1 HAVANA gene 228007051 228061260 2932.0 + 0 ENSG00000154342.5 protein_coding WNT3A 2 OTTHUMG00000037593.1 +10943 chr1 HAVANA gene 228073909 228076550 2642.0 - 0 ENSG00000276255.2 lincRNA AL136379.1 2 OTTHUMG00000189299.1 +10944 chr1 ENSEMBL gene 228097263 228097341 79.0 + 0 ENSG00000284163.1 miRNA MIR3620 3 +10945 chr1 HAVANA gene 228082660 228099212 3281.0 + 0 ENSG00000143761.15 protein_coding ARF1 2 OTTHUMG00000037595.3 ncRNA_host +10946 chr1 HAVANA gene 228100726 228105411 4308.0 - 0 ENSG00000143793.12 protein_coding C1orf35 2 OTTHUMG00000037793.2 +10947 chr1 HAVANA gene 228106679 228109312 1886.0 - 0 ENSG00000162910.18 protein_coding MRPL55 2 OTTHUMG00000037965.9 +10948 chr1 HAVANA gene 228114997 228115473 477.0 - 0 ENSG00000224566.2 processed_pseudogene FAM96AP2 1 OTTHUMG00000039501.2 pseudo_consens +10949 chr1 HAVANA gene 228121523 228123771 2249.0 + 0 ENSG00000280157.1 TEC AL359510.2 2 OTTHUMG00000176322.1 +10950 chr1 HAVANA gene 228134785 228134992 208.0 - 0 ENSG00000227625.2 processed_pseudogene AL359510.1 1 OTTHUMG00000039502.2 pseudo_consens +10951 chr1 HAVANA gene 228139962 228148984 4725.0 + 0 ENSG00000143774.16 protein_coding GUK1 2 OTTHUMG00000039503.6 +10952 chr1 HAVANA gene 228149852 228159826 2243.0 + 0 ENSG00000198835.3 protein_coding GJC2 2 OTTHUMG00000039771.1 +10953 chr1 HAVANA gene 228164086 228165512 641.0 - 0 ENSG00000203684.5 lincRNA IBA57-DT 2 OTTHUMG00000039768.1 +10954 chr1 HAVANA gene 228165815 228182257 10219.0 + 0 ENSG00000181873.12 protein_coding IBA57 2 OTTHUMG00000039769.2 +10955 chr1 HAVANA gene 228203506 228213664 3647.0 - 0 ENSG00000162913.9 antisense OBSCN-AS1 1 OTTHUMG00000039770.5 +10956 chr1 HAVANA gene 228270443 228274397 3955.0 - 0 ENSG00000269890.1 antisense AL353593.1 2 OTTHUMG00000183900.1 +10957 chr1 HAVANA gene 228274584 228276066 1483.0 - 0 ENSG00000269934.1 antisense AL353593.2 2 OTTHUMG00000183901.2 +10958 chr1 HAVANA gene 228295911 228302998 764.0 - 0 ENSG00000270110.1 antisense AL353593.3 2 OTTHUMG00000183902.1 +10959 chr1 HAVANA gene 228208130 228378874 32290.0 + 0 ENSG00000154358.20 protein_coding OBSCN 1 OTTHUMG00000039772.11 +10960 chr1 HAVANA gene 228384114 228385016 574.0 - 0 ENSG00000270104.1 lincRNA AL670729.3 2 OTTHUMG00000183903.1 +10961 chr1 HAVANA gene 228394290 228396967 480.0 + 0 ENSG00000270094.1 antisense AL670729.2 2 OTTHUMG00000183904.1 +10962 chr1 ENSEMBL gene 228397048 228397109 62.0 - 0 ENSG00000284311.1 miRNA MIR6742 3 +10963 chr1 HAVANA gene 228393673 228406840 8493.0 - 0 ENSG00000154370.15 protein_coding TRIM11 2 OTTHUMG00000039773.6 ncRNA_host +10964 chr1 HAVANA gene 228407381 228409694 283.0 + 0 ENSG00000231563.1 antisense AL670729.1 2 OTTHUMG00000039975.1 +10965 chr1 HAVANA gene 228407940 228416861 3548.0 - 0 ENSG00000162931.11 protein_coding TRIM17 2 OTTHUMG00000039974.5 +10966 chr1 HAVANA gene 228424845 228425325 481.0 - 0 ENSG00000168148.3 protein_coding HIST3H3 2 OTTHUMG00000040044.2 +10967 chr1 HAVANA gene 228449163 228449621 459.0 - 0 ENSG00000230841.2 processed_pseudogene RPL23AP15 1 OTTHUMG00000040047.2 pseudo_consens +10968 chr1 HAVANA gene 228456979 228457873 895.0 - 0 ENSG00000181218.5 protein_coding HIST3H2A 2 OTTHUMG00000040046.1 +10969 chr1 HAVANA gene 228458107 228460470 2364.0 + 0 ENSG00000196890.4 protein_coding HIST3H2BB 2 OTTHUMG00000040045.1 +10970 chr1 ENSEMBL gene 228462074 228462152 79.0 + 0 ENSG00000266174.1 miRNA MIR4666A 3 +10971 chr1 HAVANA gene 228464103 228464626 524.0 - 0 ENSG00000181201.3 unitary_pseudogene HIST3H2BA 2 OTTHUMG00000040095.1 +10972 chr1 HAVANA gene 228486188 228487120 933.0 - 0 ENSG00000279306.1 TEC AL139288.1 2 OTTHUMG00000170550.1 +10973 chr1 HAVANA gene 228487061 228495766 3285.0 + 0 ENSG00000168159.11 protein_coding RNF187 2 OTTHUMG00000040043.5 +10974 chr1 HAVANA gene 228510425 228512305 731.0 - 0 ENSG00000215811.6 transcribed_unitary_pseudogene BTNL10 2 OTTHUMG00000191924.1 +10975 chr1 ENSEMBL gene 228555793 228555901 109.0 + 0 ENSG00000202056.1 rRNA_pseudogene RNA5SP19 3 +10976 chr1 ENSEMBL gene 228558296 228558339 44.0 - 0 ENSG00000251823.2 rRNA_pseudogene RNA5SP162 3 +10977 chr1 ENSEMBL gene 228610268 228610386 119.0 - 0 ENSG00000199352.1 rRNA RNA5S1 3 +10978 chr1 ENSEMBL gene 228612509 228612627 119.0 - 0 ENSG00000201588.1 rRNA RNA5S2 3 +10979 chr1 ENSEMBL gene 228614750 228614868 119.0 - 0 ENSG00000199337.1 rRNA RNA5S3 3 +10980 chr1 ENSEMBL gene 228616991 228617109 119.0 - 0 ENSG00000200381.1 rRNA RNA5S4 3 +10981 chr1 ENSEMBL gene 228619232 228619350 119.0 - 0 ENSG00000199396.1 rRNA RNA5S5 3 +10982 chr1 ENSEMBL gene 228621447 228621565 119.0 - 0 ENSG00000200624.1 rRNA RNA5S6 3 +10983 chr1 ENSEMBL gene 228623667 228623785 119.0 - 0 ENSG00000202521.1 rRNA RNA5S7 3 +10984 chr1 ENSEMBL gene 228625909 228626027 119.0 - 0 ENSG00000200343.1 rRNA RNA5S8 3 +10985 chr1 ENSEMBL gene 228628148 228628266 119.0 - 0 ENSG00000201321.1 rRNA RNA5S9 3 +10986 chr1 ENSEMBL gene 228630390 228630508 119.0 - 0 ENSG00000199910.1 rRNA RNA5S10 3 +10987 chr1 ENSEMBL gene 228632631 228632749 119.0 - 0 ENSG00000199334.1 rRNA RNA5S11 3 +10988 chr1 ENSEMBL gene 228634871 228634989 119.0 - 0 ENSG00000199270.1 rRNA RNA5S12 3 +10989 chr1 ENSEMBL gene 228637096 228637214 119.0 - 0 ENSG00000202526.1 rRNA RNA5S13 3 +10990 chr1 ENSEMBL gene 228639337 228639455 119.0 - 0 ENSG00000201355.1 rRNA RNA5S14 3 +10991 chr1 ENSEMBL gene 228641568 228641686 119.0 - 0 ENSG00000201925.1 rRNA RNA5S15 3 +10992 chr1 ENSEMBL gene 228643809 228643927 119.0 - 0 ENSG00000202257.1 rRNA RNA5S16 3 +10993 chr1 ENSEMBL gene 228646040 228646158 119.0 - 0 ENSG00000200370.1 rRNA RNA5S17 3 +10994 chr1 ENSEMBL gene 228647912 228648032 121.0 - 0 ENSG00000212237.1 rRNA_pseudogene RNA5SP18 3 +10995 chr1 HAVANA gene 228650241 228651379 1139.0 + 0 ENSG00000183929.7 processed_pseudogene DUSP5P1 1 OTTHUMG00000037916.3 pseudo_consens +10996 chr1 ENSEMBL gene 228652436 228652560 125.0 + 0 ENSG00000206878.1 snoRNA RF00432 3 +10997 chr1 HAVANA gene 228687415 228687826 412.0 + 0 ENSG00000234975.6 processed_pseudogene FTH1P2 1 OTTHUMG00000037918.2 pseudo_consens +10998 chr1 HAVANA gene 228735077 228746669 4372.0 + 0 ENSG00000116574.5 protein_coding RHOU 2 OTTHUMG00000037919.1 +10999 chr1 HAVANA gene 228776312 228776865 554.0 + 0 ENSG00000271475.1 processed_pseudogene AL078624.2 1 OTTHUMG00000184481.1 pseudo_consens +11000 chr1 HAVANA gene 228858010 228858556 547.0 + 0 ENSG00000271399.1 processed_pseudogene AL078624.1 1 OTTHUMG00000184482.1 pseudo_consens +11001 chr1 HAVANA gene 229022773 229038274 659.0 - 0 ENSG00000282111.1 lincRNA AL137793.2 2 OTTHUMG00000191451.1 +11002 chr1 HAVANA gene 229042171 229042591 421.0 + 0 ENSG00000229840.2 processed_pseudogene ISCA1P2 1 OTTHUMG00000037628.2 pseudo_consens +11003 chr1 HAVANA gene 229092815 229094905 599.0 - 0 ENSG00000236975.1 lincRNA AL137793.1 2 OTTHUMG00000041351.1 +11004 chr1 HAVANA gene 229223461 229227562 792.0 - 0 ENSG00000233920.1 antisense AL162595.2 2 OTTHUMG00000037661.2 +11005 chr1 HAVANA gene 229249636 229251810 2175.0 + 0 ENSG00000177800.2 lincRNA TMEM78 2 OTTHUMG00000037629.2 +11006 chr1 HAVANA gene 229258281 229271028 1155.0 - 0 ENSG00000177788.5 bidirectional_promoter_lncRNA AL162595.1 2 OTTHUMG00000037660.1 +11007 chr1 HAVANA gene 229304857 229305504 648.0 + 0 ENSG00000213029.3 protein_coding SPHAR 2 OTTHUMG00000058947.1 overlapping_locus +11008 chr1 HAVANA gene 229271062 229305894 3310.0 + 0 ENSG00000168118.11 protein_coding RAB4A 2 OTTHUMG00000037627.4 overlapping_locus +11009 chr1 HAVANA gene 229319403 229323087 640.0 + 0 ENSG00000237481.1 antisense AL117350.1 2 OTTHUMG00000037662.1 +11010 chr1 HAVANA gene 229321005 229343294 6263.0 - 0 ENSG00000154429.10 protein_coding CCSAP 2 OTTHUMG00000037663.2 +11011 chr1 ENSEMBL gene 229383128 229383188 61.0 + 0 ENSG00000252506.1 snRNA RNU6-180P 3 +11012 chr1 ENSEMBL gene 229410500 229410767 268.0 - 0 ENSG00000252051.1 misc_RNA RN7SKP276 3 +11013 chr1 HAVANA gene 229425020 229425650 350.0 + 0 ENSG00000230331.1 processed_pseudogene AL160004.2 1 OTTHUMG00000038007.1 pseudo_consens +11014 chr1 HAVANA gene 229431245 229434098 1495.0 - 0 ENSG00000143632.14 protein_coding ACTA1 2 OTTHUMG00000038006.3 +11015 chr1 HAVANA gene 229440284 229441020 478.0 - 0 ENSG00000226920.1 3prime_overlapping_ncRNA AL160004.1 2 OTTHUMG00000189502.1 +11016 chr1 HAVANA gene 229440260 229508341 6080.0 - 0 ENSG00000069248.11 protein_coding NUP133 2 OTTHUMG00000039462.3 +11017 chr1 HAVANA gene 229508501 229514272 591.0 + 0 ENSG00000223635.1 antisense AL121990.1 2 OTTHUMG00000039467.1 +11018 chr1 ENSEMBL gene 229535064 229535189 126.0 - 0 ENSG00000199672.1 snRNA RNU4-21P 3 +11019 chr1 ENSEMBL gene 229549905 229550022 118.0 + 0 ENSG00000201492.1 rRNA_pseudogene RNA5SP78 3 +11020 chr1 HAVANA gene 229516582 229558695 4256.0 - 0 ENSG00000135776.4 protein_coding ABCB10 2 OTTHUMG00000039471.1 ncRNA_host +11021 chr1 HAVANA gene 229570532 229570796 265.0 + 0 ENSG00000229367.1 processed_pseudogene HMGN2P19 2 OTTHUMG00000039469.1 +11022 chr1 HAVANA gene 229593111 229626047 6412.0 - 0 ENSG00000135801.9 protein_coding TAF5L 2 OTTHUMG00000039463.2 +11023 chr1 HAVANA gene 229626234 229660199 6001.0 + 0 ENSG00000135763.9 protein_coding URB2 2 OTTHUMG00000039464.2 +11024 chr1 HAVANA gene 229688999 229689904 906.0 - 0 ENSG00000213028.3 processed_pseudogene AL354983.1 1 OTTHUMG00000039466.1 pseudo_consens +11025 chr1 HAVANA gene 229705234 229705861 628.0 - 0 ENSG00000225984.1 processed_pseudogene HMGB1P26 1 OTTHUMG00000039468.1 pseudo_consens +11026 chr1 HAVANA gene 229875550 229885752 385.0 - 0 ENSG00000227043.1 lincRNA LINC01682 2 OTTHUMG00000039465.2 +11027 chr1 HAVANA gene 230002730 230007162 654.0 + 0 ENSG00000228058.1 lincRNA LINC01736 1 OTTHUMG00000037758.1 +11028 chr1 HAVANA gene 230258694 230268483 861.0 - 0 ENSG00000227006.1 antisense AL136988.2 1 OTTHUMG00000037755.1 +11029 chr1 HAVANA gene 230280312 230281893 1029.0 - 0 ENSG00000224407.1 antisense AL136988.1 2 OTTHUMG00000037756.1 +11030 chr1 HAVANA gene 230057990 230282124 7743.0 + 0 ENSG00000143641.9 protein_coding GALNT2 2 OTTHUMG00000037771.1 +11031 chr1 HAVANA gene 230314482 230426371 11304.0 - 0 ENSG00000177614.10 protein_coding PGBD5 1 OTTHUMG00000037759.5 +11032 chr1 HAVANA gene 230426491 230436822 540.0 + 0 ENSG00000282564.1 lincRNA AL133516.1 2 OTTHUMG00000191452.1 +11033 chr1 HAVANA gene 230592660 230595583 403.0 - 0 ENSG00000232964.2 lincRNA LINC01737 2 OTTHUMG00000037760.2 +11034 chr1 HAVANA gene 230612009 230612412 404.0 - 0 ENSG00000235817.2 processed_pseudogene AL158214.1 1 OTTHUMG00000037761.2 pseudo_consens +11035 chr1 HAVANA gene 230642489 230693982 10938.0 + 0 ENSG00000135775.13 protein_coding COG2 1 OTTHUMG00000037753.2 +11036 chr1 HAVANA gene 230702523 230714297 2291.0 - 0 ENSG00000135744.7 protein_coding AGT 2 OTTHUMG00000037757.1 overlapping_locus +11037 chr1 HAVANA gene 230710698 230795492 1345.0 - 0 ENSG00000244137.1 antisense AL512328.1 2 OTTHUMG00000037778.1 overlapping_locus +11038 chr1 HAVANA gene 230747384 230802003 2593.0 + 0 ENSG00000135773.12 protein_coding CAPN9 2 OTTHUMG00000037779.1 +11039 chr1 ENSEMBL gene 230820250 230820358 109.0 + 0 ENSG00000202063.1 rRNA_pseudogene RNA5SP79 3 +11040 chr1 HAVANA gene 230823641 230824707 311.0 - 0 ENSG00000225656.1 lincRNA AL118511.2 2 OTTHUMG00000037789.1 +11041 chr1 HAVANA gene 230837119 230869589 5161.0 - 0 ENSG00000119280.16 protein_coding C1orf198 1 OTTHUMG00000037790.3 +11042 chr1 HAVANA gene 230874846 230879015 794.0 + 0 ENSG00000223393.1 antisense AL118511.1 2 OTTHUMG00000037791.1 +11043 chr1 ENSEMBL gene 230894141 230894427 287.0 + 0 ENSG00000240502.2 misc_RNA RN7SL837P 3 +11044 chr1 HAVANA gene 230906243 230978875 4212.0 - 0 ENSG00000143643.12 protein_coding TTC13 2 OTTHUMG00000037788.4 +11045 chr1 HAVANA gene 230978981 231000595 1987.0 + 0 ENSG00000173409.13 protein_coding ARV1 1 OTTHUMG00000037837.6 +11046 chr1 ENSEMBL gene 231019828 231019924 97.0 - 0 ENSG00000283799.1 miRNA MIR1182 3 +11047 chr1 HAVANA gene 231021611 231022183 573.0 + 0 ENSG00000227934.1 processed_pseudogene AL732414.1 1 OTTHUMG00000037961.1 pseudo_consens +11048 chr1 HAVANA gene 231018958 231040246 2394.0 - 0 ENSG00000182118.7 protein_coding FAM89A 2 OTTHUMG00000037960.2 ncRNA_host +11049 chr1 HAVANA gene 231117831 231118325 495.0 - 0 ENSG00000229595.1 processed_pseudogene AL109810.1 1 OTTHUMG00000037957.1 pseudo_consens +11050 chr1 HAVANA gene 231184098 231187627 1348.0 - 0 ENSG00000235710.4 lincRNA AL109810.2 2 OTTHUMG00000037959.2 +11051 chr1 HAVANA gene 231162112 231221556 9326.0 + 0 ENSG00000119283.15 protein_coding TRIM67 2 OTTHUMG00000037958.7 +11052 chr1 HAVANA gene 231223763 231241187 5413.0 - 0 ENSG00000143633.12 protein_coding C1orf131 2 OTTHUMG00000038023.3 +11053 chr1 HAVANA gene 231241207 231277973 3173.0 + 0 ENSG00000116906.12 protein_coding GNPAT 2 OTTHUMG00000038024.3 +11054 chr1 ENSEMBL gene 231281414 231281524 111.0 - 0 ENSG00000222407.1 rRNA_pseudogene RNA5SP80 3 +11055 chr1 HAVANA gene 231332753 231337852 5100.0 - 0 ENSG00000116903.7 protein_coding EXOC8 2 OTTHUMG00000038025.2 +11056 chr1 HAVANA gene 231337104 231355023 5906.0 + 0 ENSG00000010072.15 protein_coding SPRTN 2 OTTHUMG00000038022.2 +11057 chr1 HAVANA gene 231363751 231425044 7265.0 - 0 ENSG00000135766.8 protein_coding EGLN1 2 OTTHUMG00000038027.1 +11058 chr1 HAVANA gene 231475956 231476288 333.0 - 0 ENSG00000223982.3 processed_pseudogene SNRPD2P2 1 OTTHUMG00000039489.1 pseudo_consens +11059 chr1 HAVANA gene 231522388 231528556 1021.0 - 0 ENSG00000233461.5 antisense AL445524.1 2 OTTHUMG00000039487.1 +11060 chr1 HAVANA gene 231528653 231566524 6241.0 + 0 ENSG00000116918.13 protein_coding TSNAX 1 OTTHUMG00000039486.3 overlapping_locus +11061 chr1 HAVANA gene 231591292 231612090 597.0 - 0 ENSG00000229228.1 antisense LINC00582 2 OTTHUMG00000039488.1 +11062 chr1 ENSEMBL gene 231670635 231670750 116.0 + 0 ENSG00000222986.1 snRNA RNU5A-5P 3 +11063 chr1 ENSEMBL gene 231814982 231815186 205.0 + 0 ENSG00000274121.1 misc_RNA RF02102 3 +11064 chr1 HAVANA gene 231528653 231819244 3557.0 + 0 ENSG00000270106.6 protein_coding TSNAX-DISC1 2 OTTHUMG00000183905.3 ncRNA_host,overlapping_locus +11065 chr1 HAVANA gene 231925834 231945233 762.0 + 0 ENSG00000226758.1 sense_intronic DISC1-IT1 2 OTTHUMG00000037834.1 overlapping_locus +11066 chr1 HAVANA gene 231626815 232041272 12906.0 + 0 ENSG00000162946.22 protein_coding DISC1 2 OTTHUMG00000037835.8 ncRNA_host,overlapping_locus +11067 chr1 HAVANA gene 232174932 232180113 2241.0 - 0 ENSG00000236372.1 lincRNA AL353052.2 2 OTTHUMG00000037832.1 +11068 chr1 HAVANA gene 232160091 232185643 818.0 + 0 ENSG00000235152.1 lincRNA AL353052.1 2 OTTHUMG00000037849.1 +11069 chr1 HAVANA gene 232221938 232222174 237.0 - 0 ENSG00000224436.1 processed_pseudogene BX323014.1 2 OTTHUMG00000037847.1 +11070 chr1 ENSEMBL gene 232222866 232223145 280.0 + 0 ENSG00000242794.2 misc_RNA RN7SL299P 3 +11071 chr1 HAVANA gene 232397965 232561558 7641.0 - 0 ENSG00000116991.10 protein_coding SIPA1L2 2 OTTHUMG00000037820.1 +11072 chr1 ENSEMBL gene 232700204 232700308 105.0 + 0 ENSG00000238382.1 snRNA RNU6-1211P 3 +11073 chr1 HAVANA gene 232718071 232722250 372.0 + 0 ENSG00000225919.1 lincRNA LINC01745 1 OTTHUMG00000037823.1 +11074 chr1 HAVANA gene 232727254 232742715 2042.0 - 0 ENSG00000236497.1 lincRNA LINC01744 2 OTTHUMG00000037825.1 +11075 chr1 HAVANA gene 232804892 232808407 3516.0 + 0 ENSG00000212916.4 protein_coding MAP10 2 OTTHUMG00000037819.3 +11076 chr1 ENSEMBL gene 232832017 232832187 171.0 - 0 ENSG00000206835.1 snRNA RNU1-74P 3 +11077 chr1 HAVANA gene 232917235 232918018 784.0 + 0 ENSG00000232175.1 processed_pseudogene AL122003.1 1 OTTHUMG00000037821.1 pseudo_consens +11078 chr1 HAVANA gene 232950605 232983882 15854.0 + 0 ENSG00000135778.11 protein_coding NTPCR 1 OTTHUMG00000037822.3 +11079 chr1 HAVANA gene 233288868 233289447 580.0 - 0 ENSG00000231940.1 processed_pseudogene RPS7P3 1 OTTHUMG00000037888.1 pseudo_consens,overlapping_locus +11080 chr1 HAVANA gene 232983435 233295713 13815.0 - 0 ENSG00000135749.18 protein_coding PCNX2 1 OTTHUMG00000037824.7 overlapping_locus +11081 chr1 HAVANA gene 233295325 233295727 324.0 - 0 ENSG00000251508.1 unprocessed_pseudogene AL133380.1 2 OTTHUMG00000057829.1 overlapping_locus +11082 chr1 HAVANA gene 233327768 233385148 7916.0 + 0 ENSG00000143674.10 protein_coding MAP3K21 2 OTTHUMG00000037889.1 +11083 chr1 ENSEMBL gene 233448626 233448781 156.0 - 0 ENSG00000252501.1 snRNA RNU4-77P 3 +11084 chr1 ENSEMBL gene 233624152 233624219 68.0 + 0 ENSG00000265744.1 miRNA MIR4427 3 +11085 chr1 HAVANA gene 233614004 233672512 3627.0 + 0 ENSG00000135750.14 protein_coding KCNK1 2 OTTHUMG00000037923.4 ncRNA_host +11086 chr1 HAVANA gene 233836080 233836432 353.0 - 0 ENSG00000225486.1 processed_pseudogene AL663058.1 1 OTTHUMG00000037922.1 pseudo_consens +11087 chr1 HAVANA gene 234026851 234027227 377.0 - 0 ENSG00000236101.1 processed_pseudogene RAC1P7 1 OTTHUMG00000057831.1 pseudo_consens +11088 chr1 HAVANA gene 234212606 234215088 1723.0 - 0 ENSG00000233332.1 antisense AL122008.3 2 OTTHUMG00000040084.1 +11089 chr1 HAVANA gene 234268583 234272500 388.0 - 0 ENSG00000236244.1 antisense AL122008.4 2 OTTHUMG00000040085.1 +11090 chr1 HAVANA gene 234261706 234274465 452.0 + 0 ENSG00000231272.1 sense_intronic AL122008.1 2 OTTHUMG00000041308.1 overlapping_locus +11091 chr1 HAVANA gene 234284972 234285541 570.0 + 0 ENSG00000232166.1 processed_pseudogene AL122008.2 1 OTTHUMG00000157018.1 pseudo_consens,overlapping_locus +11092 chr1 ENSEMBL gene 234306467 234306539 73.0 + 0 ENSG00000264377.1 miRNA MIR4671 3 +11093 chr1 HAVANA gene 233904933 234324516 3195.0 + 0 ENSG00000183780.12 protein_coding SLC35F3 2 OTTHUMG00000037929.2 ncRNA_host,overlapping_locus +11094 chr1 HAVANA gene 234356704 234357141 438.0 - 0 ENSG00000235605.1 processed_pseudogene AL355472.2 1 OTTHUMG00000037943.1 pseudo_consens +11095 chr1 HAVANA gene 234357006 234365828 410.0 + 0 ENSG00000236358.1 antisense AL355472.3 2 OTTHUMG00000037944.1 +11096 chr1 HAVANA gene 234372186 234372811 626.0 + 0 ENSG00000273367.1 antisense AL355472.4 2 OTTHUMG00000185838.1 +11097 chr1 HAVANA gene 234372807 234373593 575.0 - 0 ENSG00000231663.1 antisense AL355472.1 1 OTTHUMG00000037946.1 +11098 chr1 HAVANA gene 234373456 234384049 1257.0 + 0 ENSG00000168275.14 protein_coding COA6 2 OTTHUMG00000037945.1 +11099 chr1 HAVANA gene 234391313 234479103 7743.0 - 0 ENSG00000059588.9 protein_coding TARBP1 2 OTTHUMG00000037947.3 +11100 chr1 HAVANA gene 234527891 234531779 2870.0 - 0 ENSG00000231768.1 lincRNA LINC01354 2 OTTHUMG00000037976.1 +11101 chr1 HAVANA gene 234565298 234570088 390.0 + 0 ENSG00000230404.1 lincRNA AL161640.1 1 OTTHUMG00000037977.1 +11102 chr1 ENSEMBL gene 234593275 234593402 128.0 + 0 ENSG00000212144.1 snoRNA RF00096 3 +11103 chr1 HAVANA gene 234607008 234609483 693.0 + 0 ENSG00000228830.1 antisense AL160408.2 2 OTTHUMG00000037978.1 +11104 chr1 HAVANA gene 234604269 234609525 4724.0 - 0 ENSG00000168264.10 protein_coding IRF2BP2 2 OTTHUMG00000037981.1 +11105 chr1 HAVANA gene 234629311 234634780 2270.0 + 0 ENSG00000224939.1 lincRNA LINC00184 2 OTTHUMG00000037979.1 +11106 chr1 HAVANA gene 234644666 234647571 526.0 + 0 ENSG00000272362.1 lincRNA AL160408.5 2 OTTHUMG00000185303.1 overlapping_locus +11107 chr1 HAVANA gene 234660271 234667104 933.0 + 0 ENSG00000241475.1 lincRNA AL160408.4 2 OTTHUMG00000037982.1 overlapping_locus +11108 chr1 HAVANA gene 234646289 234683176 2201.0 + 0 ENSG00000228044.2 lincRNA AL160408.1 2 OTTHUMG00000037980.1 overlapping_locus +11109 chr1 HAVANA gene 234669523 234696153 3564.0 - 0 ENSG00000230628.1 lincRNA AL160408.3 2 OTTHUMG00000037983.1 +11110 chr1 HAVANA gene 234709383 234720220 1257.0 + 0 ENSG00000282097.1 lincRNA AL160408.6 2 OTTHUMG00000038016.4 +11111 chr1 HAVANA gene 234724042 234736720 5081.0 + 0 ENSG00000227630.3 lincRNA LINC01132 2 OTTHUMG00000038017.3 +11112 chr1 HAVANA gene 234757619 234760056 2438.0 - 0 ENSG00000279261.2 lincRNA AL360294.1 2 OTTHUMG00000192130.1 +11113 chr1 ENSEMBL gene 234837976 234838069 94.0 + 0 ENSG00000201638.2 misc_RNA RNY4P16 3 +11114 chr1 ENSEMBL gene 234904186 234904488 303.0 + 0 ENSG00000239690.3 misc_RNA RN7SL668P 3 +11115 chr1 HAVANA gene 234957231 234959989 423.0 + 0 ENSG00000237520.1 lincRNA AL391832.1 1 OTTHUMG00000038015.1 +11116 chr1 HAVANA gene 234957342 234970062 1666.0 - 0 ENSG00000238005.2 lincRNA AL391832.2 2 OTTHUMG00000038014.3 +11117 chr1 HAVANA gene 234979647 234980804 846.0 - 0 ENSG00000258082.1 lincRNA AL391832.3 2 OTTHUMG00000170191.1 +11118 chr1 HAVANA gene 235065479 235074220 3262.0 - 0 ENSG00000280587.1 lincRNA LINC01348 2 OTTHUMG00000189738.1 +11119 chr1 HAVANA gene 235097187 235097412 226.0 - 0 ENSG00000233018.1 processed_pseudogene AL732292.1 1 OTTHUMG00000039618.1 pseudo_consens +11120 chr1 HAVANA gene 235104180 235104609 430.0 - 0 ENSG00000273416.1 lincRNA AL732292.2 2 OTTHUMG00000185835.1 +11121 chr1 ENSEMBL gene 235127803 235127937 135.0 - 0 ENSG00000207181.1 snoRNA SNORA14B 3 +11122 chr1 HAVANA gene 235109336 235128936 3542.0 - 0 ENSG00000173726.10 protein_coding TOMM20 2 OTTHUMG00000039619.1 ncRNA_host +11123 chr1 HAVANA gene 235131183 235161457 3113.0 - 0 ENSG00000188739.14 protein_coding RBM34 1 OTTHUMG00000039620.9 overlapping_locus +11124 chr1 ENSEMBL gene 235190034 235190116 83.0 - 0 ENSG00000263439.1 miRNA MIR4753 3 +11125 chr1 HAVANA gene 235295865 235296335 471.0 + 0 ENSG00000236863.2 processed_pseudogene RPL23AP23 1 OTTHUMG00000039622.2 pseudo_consens +11126 chr1 HAVANA gene 235131634 235328219 11073.0 - 0 ENSG00000054267.21 protein_coding ARID4B 2 OTTHUMG00000039621.8 ncRNA_host,overlapping_locus +11127 chr1 HAVANA gene 235336806 235337087 282.0 + 0 ENSG00000227962.1 processed_pseudogene AL391994.1 1 OTTHUMG00000057833.1 pseudo_consens,overlapping_locus +11128 chr1 HAVANA gene 235327350 235344532 3809.0 + 0 ENSG00000152904.11 protein_coding GGPS1 1 OTTHUMG00000037963.3 overlapping_locus +11129 chr1 HAVANA gene 235361153 235362540 1388.0 + 0 ENSG00000230026.2 processed_pseudogene AL357556.1 2 OTTHUMG00000040751.2 +11130 chr1 HAVANA gene 235366353 235367366 428.0 - 0 ENSG00000285177.1 antisense AL357556.4 2 OTTHUMG00000192487.1 +11131 chr1 HAVANA gene 235432985 235433231 247.0 + 0 ENSG00000229795.2 transcribed_processed_pseudogene RPS21P1 2 OTTHUMG00000157020.2 overlapping_locus +11132 chr1 HAVANA gene 235328570 235448952 5184.0 + 0 ENSG00000285053.1 protein_coding TBCE 2 OTTHUMG00000192486.7 overlapping_locus +11133 chr1 HAVANA gene 235367360 235452443 12444.0 + 0 ENSG00000284770.1 protein_coding TBCE 2 OTTHUMG00000039987.13 overlapping_locus +11134 chr1 HAVANA gene 235449923 235504481 5702.0 - 0 ENSG00000162885.12 protein_coding B3GALNT2 2 OTTHUMG00000040468.5 +11135 chr1 HAVANA gene 235519971 235520685 715.0 + 0 ENSG00000238236.1 processed_pseudogene MTCYBP14 2 OTTHUMG00000040469.2 +11136 chr1 HAVANA gene 235537520 235538041 522.0 + 0 ENSG00000235638.1 processed_pseudogene MTND6P14 2 OTTHUMG00000040746.1 +11137 chr1 HAVANA gene 235538052 235539845 1794.0 - 0 ENSG00000231199.2 processed_pseudogene MTND5P19 2 OTTHUMG00000040745.2 +11138 chr1 HAVANA gene 235540053 235541415 1363.0 - 0 ENSG00000226663.2 processed_pseudogene MTND4P10 2 OTTHUMG00000040744.2 overlapping_locus +11139 chr1 HAVANA gene 235541412 235541706 295.0 - 0 ENSG00000231582.2 processed_pseudogene MTND4LP21 2 OTTHUMG00000040743.2 overlapping_locus +11140 chr1 HAVANA gene 235541759 235542097 339.0 - 0 ENSG00000232714.1 processed_pseudogene MTND3P8 2 OTTHUMG00000040742.1 +11141 chr1 HAVANA gene 235542159 235542390 232.0 - 0 ENSG00000235761.2 processed_pseudogene MTCO3P46 2 OTTHUMG00000040741.2 +11142 chr1 HAVANA gene 235565761 235566937 708.0 + 0 ENSG00000270710.1 processed_pseudogene FO393422.1 1 OTTHUMG00000184483.1 pseudo_consens +11143 chr1 HAVANA gene 235614674 235616397 1724.0 + 0 ENSG00000227236.2 processed_pseudogene AL583844.1 1 OTTHUMG00000040739.2 pseudo_consens +11144 chr1 HAVANA gene 235547687 235650754 5401.0 - 0 ENSG00000168243.10 protein_coding GNG4 2 OTTHUMG00000040740.2 +11145 chr1 HAVANA gene 235738005 235738989 985.0 + 0 ENSG00000235674.2 processed_pseudogene LDHAP2 1 OTTHUMG00000040747.2 pseudo_consens +11146 chr1 HAVANA gene 235839483 235840182 521.0 + 0 ENSG00000229463.2 antisense LYST-AS1 2 OTTHUMG00000041434.2 +11147 chr1 ENSEMBL gene 235853000 235853060 61.0 - 0 ENSG00000222831.1 miRNA MIR1537 3 +11148 chr1 HAVANA gene 235661041 235883640 19614.0 - 0 ENSG00000143669.13 protein_coding LYST 1 OTTHUMG00000040527.11 ncRNA_host +11149 chr1 ENSEMBL gene 235915415 235915521 107.0 + 0 ENSG00000206803.1 snRNA RNU6-968P 3 +11150 chr1 HAVANA gene 235942553 235943805 740.0 - 0 ENSG00000237845.1 lincRNA AL139161.2 2 OTTHUMG00000041431.1 +11151 chr1 HAVANA gene 235957879 235971825 190.0 - 0 ENSG00000229291.1 lincRNA AL139161.1 2 OTTHUMG00000041435.1 +11152 chr1 ENSEMBL gene 236060677 236060772 96.0 + 0 ENSG00000252822.1 misc_RNA RF00019 3 +11153 chr1 HAVANA gene 235975830 236065162 5864.0 - 0 ENSG00000116962.14 protein_coding NID1 2 OTTHUMG00000040071.2 +11154 chr1 HAVANA gene 236110061 236112370 2310.0 + 0 ENSG00000235371.1 processed_pseudogene AL122018.1 1 OTTHUMG00000037995.1 pseudo_consens +11155 chr1 HAVANA gene 236142505 236221865 2309.0 + 0 ENSG00000077585.13 protein_coding GPR137B 2 OTTHUMG00000037994.3 +11156 chr1 ENSEMBL gene 236267780 236267958 179.0 + 0 ENSG00000222650.1 snRNA RNU2-70P 3 +11157 chr1 HAVANA gene 236215555 236281985 5361.0 - 0 ENSG00000086619.13 protein_coding ERO1B 2 OTTHUMG00000039955.3 +11158 chr1 HAVANA gene 236285976 236286960 656.0 - 0 ENSG00000237922.1 processed_pseudogene AL450309.1 1 OTTHUMG00000039950.1 pseudo_consens +11159 chr1 HAVANA gene 236483165 236484468 1304.0 + 0 ENSG00000244457.2 transcribed_processed_pseudogene ENO1P1 2 OTTHUMG00000039951.2 overlapping_locus +11160 chr1 HAVANA gene 236348257 236502915 3985.0 + 0 ENSG00000186197.14 protein_coding EDARADD 2 OTTHUMG00000039954.5 overlapping_locus +11161 chr1 HAVANA gene 236523052 236524508 1457.0 - 0 ENSG00000223776.5 antisense LGALS8-AS1 2 OTTHUMG00000039952.2 +11162 chr1 HAVANA gene 236536162 236536704 543.0 - 0 ENSG00000273058.2 antisense AL359921.2 2 OTTHUMG00000185854.2 +11163 chr1 HAVANA gene 236540094 236550280 494.0 - 0 ENSG00000230325.1 antisense AL359921.1 2 OTTHUMG00000041413.1 overlapping_locus +11164 chr1 HAVANA gene 236518000 236552981 9710.0 + 0 ENSG00000116977.18 protein_coding LGALS8 2 OTTHUMG00000039953.10 +11165 chr1 HAVANA gene 236549005 236604504 9049.0 - 0 ENSG00000119285.10 protein_coding HEATR1 2 OTTHUMG00000040061.3 overlapping_locus +11166 chr1 HAVANA gene 236686454 236764631 5530.0 + 0 ENSG00000077522.12 protein_coding ACTN2 2 OTTHUMG00000040059.2 +11167 chr1 HAVANA gene 236819634 236820518 885.0 + 0 ENSG00000226498.2 transcribed_processed_pseudogene RPSAP21 1 OTTHUMG00000040062.2 pseudo_consens,overlapping_locus +11168 chr1 HAVANA gene 236795281 236903981 11374.0 + 0 ENSG00000116984.12 protein_coding MTR 2 OTTHUMG00000040060.4 overlapping_locus +11169 chr1 HAVANA gene 236981339 236981708 370.0 + 0 ENSG00000237991.3 processed_pseudogene RPL35P1 1 OTTHUMG00000040064.1 pseudo_consens +11170 chr1 HAVANA gene 237004103 237004418 316.0 - 0 ENSG00000244020.2 protein_coding MT1HL1 2 OTTHUMG00000040065.4 retrogene +11171 chr1 ENSEMBL gene 237120807 237121109 303.0 + 0 ENSG00000252396.1 misc_RNA RN7SKP195 3 +11172 chr1 ENSEMBL gene 237471119 237471191 73.0 + 0 ENSG00000266262.1 miRNA MIR4428 3 +11173 chr1 ENSEMBL gene 237555040 237555171 132.0 - 0 ENSG00000252290.1 snoRNA RF00402 3 +11174 chr1 HAVANA gene 237042205 237833988 17777.0 + 0 ENSG00000198626.15 protein_coding RYR2 2 OTTHUMG00000039543.3 ncRNA_host +11175 chr1 HAVANA gene 237877864 237890922 2474.0 - 0 ENSG00000116996.9 protein_coding ZP4 2 OTTHUMG00000039586.1 +11176 chr1 HAVANA gene 237926831 237927605 775.0 + 0 ENSG00000243781.1 transcribed_processed_pseudogene AL590396.1 1 OTTHUMG00000039588.1 pseudo_consens,overlapping_locus +11177 chr1 HAVANA gene 237862175 237928321 3127.0 + 0 ENSG00000237250.3 antisense AL359924.1 2 OTTHUMG00000039587.1 overlapping_locus +11178 chr1 HAVANA gene 237940762 237941061 300.0 - 0 ENSG00000283174.1 processed_pseudogene AL590396.3 2 OTTHUMG00000191742.1 +11179 chr1 HAVANA gene 237941452 237942492 1041.0 - 0 ENSG00000283166.1 processed_pseudogene AL590396.2 2 OTTHUMG00000191743.1 +11180 chr1 HAVANA gene 237942698 237943653 956.0 - 0 ENSG00000283377.1 processed_pseudogene AL590396.4 2 OTTHUMG00000191744.1 +11181 chr1 HAVANA gene 237943724 237945275 1552.0 - 0 ENSG00000270188.1 protein_coding MTRNR2L11 2 OTTHUMG00000184992.1 +11182 chr1 HAVANA gene 237948017 237949143 1127.0 - 0 ENSG00000232154.2 processed_pseudogene MTCYBP15 2 OTTHUMG00000039591.2 +11183 chr1 HAVANA gene 237949214 237949734 521.0 + 0 ENSG00000225723.1 processed_pseudogene MTND6P15 2 OTTHUMG00000039590.1 +11184 chr1 HAVANA gene 237949736 237951536 1801.0 - 0 ENSG00000227860.1 processed_pseudogene MTND5P18 2 OTTHUMG00000039589.1 +11185 chr1 HAVANA gene 238107736 238108567 512.0 - 0 ENSG00000230019.1 processed_pseudogene YWHAQP9 1 OTTHUMG00000039601.1 pseudo_consens +11186 chr1 HAVANA gene 238268494 238268595 102.0 - 0 ENSG00000232989.1 processed_pseudogene AL356010.1 2 OTTHUMG00000039534.2 +11187 chr1 HAVANA gene 238276037 238287016 197.0 + 0 ENSG00000234464.1 lincRNA AL356010.2 2 OTTHUMG00000041437.1 +11188 chr1 ENSEMBL gene 238325687 238325788 102.0 - 0 ENSG00000252371.1 snRNA RNU6-725P 3 +11189 chr1 HAVANA gene 238476542 238486054 5959.0 - 0 ENSG00000215808.3 lincRNA LINC01139 2 OTTHUMG00000039532.3 +11190 chr1 HAVANA gene 238491358 238492644 1287.0 + 0 ENSG00000215149.3 processed_pseudogene KRT18P32 1 OTTHUMG00000039531.1 pseudo_consens,overlapping_locus +11191 chr1 HAVANA gene 238485445 238538305 2900.0 + 0 ENSG00000231877.1 lincRNA AL359551.1 2 OTTHUMG00000039533.1 overlapping_locus +11192 chr1 HAVANA gene 238777049 238779200 1819.0 - 0 ENSG00000224783.1 processed_pseudogene MIPEPP2 1 OTTHUMG00000039535.1 pseudo_consens +11193 chr1 HAVANA gene 239052748 239052903 156.0 - 0 ENSG00000227854.1 processed_pseudogene AL590135.1 1 OTTHUMG00000039565.1 pseudo_consens +11194 chr1 HAVANA gene 239247808 239250818 3011.0 - 0 ENSG00000259776.1 lincRNA AC093426.1 2 OTTHUMG00000176474.1 +11195 chr1 HAVANA gene 239703381 239730465 3888.0 - 0 ENSG00000233355.6 antisense CHRM3-AS2 1 OTTHUMG00000039648.8 +11196 chr1 HAVANA gene 239898016 239899872 486.0 - 0 ENSG00000234601.1 antisense CHRM3-AS1 1 OTTHUMG00000039650.1 +11197 chr1 HAVANA gene 239386565 239915452 12170.0 + 0 ENSG00000133019.11 protein_coding CHRM3 2 OTTHUMG00000039649.5 +11198 chr1 HAVANA gene 239915439 239916955 443.0 - 0 ENSG00000231979.1 lincRNA AL356361.2 2 OTTHUMG00000039651.1 +11199 chr1 HAVANA gene 239972787 239974245 1459.0 + 0 ENSG00000215805.3 processed_pseudogene AL356361.1 1 OTTHUMG00000039693.2 pseudo_consens +11200 chr1 HAVANA gene 240012646 240013226 581.0 + 0 ENSG00000217327.3 processed_pseudogene RPS7P5 1 OTTHUMG00000039882.1 pseudo_consens +11201 chr1 HAVANA gene 240142670 240145389 2720.0 - 0 ENSG00000228818.1 processed_pseudogene AL359918.1 1 OTTHUMG00000039884.2 pseudo_consens +11202 chr1 ENSEMBL gene 240154651 240154772 122.0 - 0 ENSG00000202041.1 misc_RNA RF00019 3 +11203 chr1 HAVANA gene 240170155 240171291 1137.0 + 0 ENSG00000223694.1 processed_pseudogene ADH5P3 1 OTTHUMG00000039885.1 pseudo_consens,overlapping_locus +11204 chr1 HAVANA gene 240177839 240179644 497.0 - 0 ENSG00000233735.5 antisense AL359918.2 2 OTTHUMG00000039886.1 +11205 chr1 ENSEMBL gene 240341385 240341477 93.0 + 0 ENSG00000252317.1 misc_RNA RF00019 3 +11206 chr1 HAVANA gene 240400671 240401123 316.0 - 0 ENSG00000233519.1 antisense AL590490.1 2 OTTHUMG00000039911.1 +11207 chr1 HAVANA gene 240014348 240475189 9691.0 + 0 ENSG00000155816.19 protein_coding FMN2 2 OTTHUMG00000039883.5 ncRNA_host,overlapping_locus +11208 chr1 HAVANA gene 240530452 240530862 357.0 + 0 ENSG00000224359.2 antisense AL358176.1 2 OTTHUMG00000039910.2 +11209 chr1 HAVANA gene 240549867 240550378 204.0 - 0 ENSG00000226014.1 processed_pseudogene AL358176.2 2 OTTHUMG00000039930.1 overlapping_locus +11210 chr1 HAVANA gene 240588522 240590748 675.0 - 0 ENSG00000231440.1 sense_intronic AL358176.4 2 OTTHUMG00000040729.1 overlapping_locus +11211 chr1 HAVANA gene 240489573 240612149 4170.0 - 0 ENSG00000180875.4 protein_coding GREM2 2 OTTHUMG00000039909.1 overlapping_locus +11212 chr1 HAVANA gene 240636599 240637052 454.0 - 0 ENSG00000228844.1 processed_pseudogene AL358176.3 1 OTTHUMG00000039929.1 pseudo_consens +11213 chr1 ENSEMBL gene 240653367 240653477 111.0 + 0 ENSG00000251750.1 snRNA RNU5F-8P 3 +11214 chr1 HAVANA gene 240654241 240654625 385.0 + 0 ENSG00000234872.2 processed_pseudogene AL358176.5 1 OTTHUMG00000039931.2 pseudo_consens +11215 chr1 ENSEMBL gene 240698320 240698429 110.0 + 0 ENSG00000199241.1 misc_RNA RF00019 3 +11216 chr1 HAVANA gene 240739419 240739853 435.0 - 0 ENSG00000230015.3 lincRNA AL365184.2 2 OTTHUMG00000040503.2 +11217 chr1 HAVANA gene 240769420 240771534 2115.0 - 0 ENSG00000223963.2 processed_pseudogene THAP12P8 1 OTTHUMG00000039933.2 pseudo_consens +11218 chr1 HAVANA gene 240763382 240776044 1725.0 + 0 ENSG00000226919.2 antisense AL365184.1 2 OTTHUMG00000039932.3 +11219 chr1 HAVANA gene 240823006 240823433 428.0 - 0 ENSG00000215802.3 transcribed_processed_pseudogene RFKP1 1 OTTHUMG00000040502.2 pseudo_consens,overlapping_locus +11220 chr1 HAVANA gene 240919653 240920609 957.0 + 0 ENSG00000233615.1 processed_pseudogene HNRNPA1P42 1 OTTHUMG00000040728.1 pseudo_consens +11221 chr1 HAVANA gene 240998451 240998794 344.0 - 0 ENSG00000238085.1 processed_pseudogene AL590682.1 1 OTTHUMG00000040749.1 pseudo_consens,overlapping_locus +11222 chr1 ENSEMBL gene 241132272 241132346 75.0 + 0 ENSG00000265831.1 miRNA MIR3123 3 +11223 chr1 HAVANA gene 241305580 241305882 303.0 - 0 ENSG00000224348.2 processed_pseudogene AL592076.1 1 OTTHUMG00000039599.2 pseudo_consens,overlapping_locus +11224 chr1 HAVANA gene 240775515 241357230 2575.0 - 0 ENSG00000182901.16 protein_coding RGS7 2 OTTHUMG00000040107.4 overlapping_locus +11225 chr1 HAVANA gene 241424292 241433492 668.0 + 0 ENSG00000225554.1 lincRNA AL359764.1 2 OTTHUMG00000039598.1 +11226 chr1 HAVANA gene 241497603 241519761 2142.0 - 0 ENSG00000091483.6 protein_coding FH 2 OTTHUMG00000039597.3 +11227 chr1 HAVANA gene 241532134 241595642 5946.0 + 0 ENSG00000117009.11 protein_coding KMO 2 OTTHUMG00000039635.2 +11228 chr1 HAVANA gene 241628853 241640254 7661.0 - 0 ENSG00000203668.2 protein_coding CHML 2 OTTHUMG00000039690.3 overlapping_locus,retrogene +11229 chr1 HAVANA gene 241590102 241677376 3716.0 - 0 ENSG00000054277.13 protein_coding OPN3 2 OTTHUMG00000039691.4 overlapping_locus +11230 chr1 HAVANA gene 241652278 241802133 4939.0 + 0 ENSG00000162843.17 protein_coding WDR64 2 OTTHUMG00000039705.13 +11231 chr1 HAVANA gene 241831935 241832787 853.0 + 0 ENSG00000229022.1 processed_pseudogene AL365366.1 1 OTTHUMG00000039964.1 pseudo_consens +11232 chr1 HAVANA gene 241847967 241895148 4140.0 + 0 ENSG00000174371.16 protein_coding EXO1 1 OTTHUMG00000039965.8 +11233 chr1 HAVANA gene 241916123 241916543 421.0 + 0 ENSG00000235990.2 processed_pseudogene RPL23AP20 1 OTTHUMG00000040031.3 pseudo_consens +11234 chr1 HAVANA gene 241957767 241959062 1296.0 + 0 ENSG00000196289.7 protein_coding BECN2 2 OTTHUMG00000039863.3 +11235 chr1 HAVANA gene 241993185 241993682 498.0 + 0 ENSG00000213026.4 processed_pseudogene CFL1P4 1 OTTHUMG00000039864.2 pseudo_consens +11236 chr1 HAVANA gene 241995490 241999073 1182.0 - 0 ENSG00000197769.5 protein_coding MAP1LC3C 2 OTTHUMG00000039865.1 +11237 chr1 HAVANA gene 242057085 242060242 1288.0 + 0 ENSG00000224625.2 unprocessed_pseudogene TUBB8P6 1 OTTHUMG00000039866.2 pseudo_consens +11238 chr1 HAVANA gene 242060490 242062595 822.0 - 0 ENSG00000277099.1 unprocessed_pseudogene BX571673.1 2 OTTHUMG00000187553.1 +11239 chr1 ENSEMBL gene 242188647 242188789 143.0 - 0 ENSG00000252084.1 misc_RNA RN7SKP12 3 +11240 chr1 HAVANA gene 242147514 242209129 475.0 + 0 ENSG00000272865.1 antisense AL591686.2 2 OTTHUMG00000186269.1 overlapping_locus +11241 chr1 HAVANA gene 242203555 242210827 766.0 + 0 ENSG00000224525.2 antisense AL591686.1 2 OTTHUMG00000039869.3 overlapping_locus +11242 chr1 HAVANA gene 242345558 242345718 161.0 + 0 ENSG00000226750.1 unprocessed_pseudogene AL360271.2 2 OTTHUMG00000057835.1 +11243 chr1 HAVANA gene 242365189 242365822 634.0 + 0 ENSG00000235467.1 processed_pseudogene RPL10AP5 1 OTTHUMG00000039858.1 pseudo_consens +11244 chr1 HAVANA gene 242376923 242377432 510.0 - 0 ENSG00000213690.3 processed_pseudogene AL360271.1 2 OTTHUMG00000039857.2 overlapping_locus +11245 chr1 HAVANA gene 242082986 242524696 9545.0 - 0 ENSG00000180287.16 protein_coding PLD5 2 OTTHUMG00000039867.3 ncRNA_host,overlapping_locus +11246 chr1 HAVANA gene 242671140 242671576 437.0 + 0 ENSG00000270859.1 processed_pseudogene AC099785.1 1 OTTHUMG00000184484.1 pseudo_consens +11247 chr1 HAVANA gene 242772620 242773103 484.0 + 0 ENSG00000215800.2 processed_pseudogene RSL24D1P4 1 OTTHUMG00000039856.1 pseudo_consens +11248 chr1 HAVANA gene 242882066 242883475 1410.0 - 0 ENSG00000270818.1 processed_pseudogene AL445675.1 1 OTTHUMG00000184485.1 pseudo_consens +11249 chr1 HAVANA gene 242890247 242890803 557.0 + 0 ENSG00000277704.1 processed_pseudogene AL445675.2 2 OTTHUMG00000187556.1 +11250 chr1 HAVANA gene 242975005 242975084 80.0 + 0 ENSG00000230199.1 processed_pseudogene AL603825.1 2 OTTHUMG00000057837.1 +11251 chr1 HAVANA gene 243005845 243007468 792.0 - 0 ENSG00000234116.1 lincRNA AL606534.3 2 OTTHUMG00000039859.1 +11252 chr1 HAVANA gene 243049782 243051619 1838.0 + 0 ENSG00000278455.1 processed_pseudogene AL606534.5 1 OTTHUMG00000187558.1 pseudo_consens +11253 chr1 HAVANA gene 243029512 243052252 1460.0 - 0 ENSG00000231512.6 transcribed_unprocessed_pseudogene SEPT14P21 2 OTTHUMG00000191545.1 +11254 chr1 HAVANA gene 243054861 243056394 1243.0 - 0 ENSG00000253326.2 processed_pseudogene AL606534.4 2 OTTHUMG00000183886.1 +11255 chr1 ENSEMBL gene 243081156 243081259 104.0 - 0 ENSG00000212230.1 snRNA RNU6-747P 3 +11256 chr1 HAVANA gene 243056307 243101744 3841.0 - 0 ENSG00000214837.8 transcribed_unprocessed_pseudogene LINC01347 2 OTTHUMG00000039861.5 +11257 chr1 HAVANA gene 243135898 243140588 694.0 + 0 ENSG00000227230.1 antisense AL606534.1 2 OTTHUMG00000039875.1 +11258 chr1 HAVANA gene 243164638 243169445 488.0 + 0 ENSG00000232085.1 antisense AL606534.2 2 OTTHUMG00000039874.1 +11259 chr1 HAVANA gene 243124428 243255348 10939.0 - 0 ENSG00000143702.15 protein_coding CEP170 2 OTTHUMG00000039862.5 +11260 chr1 HAVANA gene 243267257 243268119 558.0 - 0 ENSG00000224727.1 processed_pseudogene FCF1P7 1 OTTHUMG00000039997.1 pseudo_consens +11261 chr1 ENSEMBL gene 243346176 243346255 80.0 + 0 ENSG00000265201.1 miRNA MIR4677 3 +11262 chr1 HAVANA gene 243256034 243500092 5322.0 + 0 ENSG00000054282.15 protein_coding SDCCAG8 2 OTTHUMG00000039996.3 ncRNA_host +11263 chr1 HAVANA gene 243545532 243548329 751.0 + 0 ENSG00000236031.1 antisense AL591721.1 1 OTTHUMG00000040016.1 +11264 chr1 HAVANA gene 243624666 243625056 391.0 - 0 ENSG00000226766.1 processed_pseudogene FABP7P1 1 OTTHUMG00000040017.1 pseudo_consens,overlapping_locus +11265 chr1 HAVANA gene 243702857 243740821 389.0 - 0 ENSG00000232184.1 sense_intronic AL662889.1 2 OTTHUMG00000039995.1 overlapping_locus +11266 chr1 HAVANA gene 243793205 243794400 517.0 - 0 ENSG00000228939.1 sense_intronic AKT3-IT1 1 OTTHUMG00000039993.1 overlapping_locus +11267 chr1 HAVANA gene 243488233 243851079 9475.0 - 0 ENSG00000117020.16 protein_coding AKT3 2 OTTHUMG00000039994.5 overlapping_locus +11268 chr1 HAVANA gene 243917402 244047317 1799.0 + 0 ENSG00000226828.1 lincRNA AL591885.1 2 OTTHUMG00000040014.1 +11269 chr1 HAVANA gene 244048939 244057476 3906.0 + 0 ENSG00000179456.10 protein_coding ZBTB18 2 OTTHUMG00000040013.2 +11270 chr1 HAVANA gene 244064330 244067909 3580.0 + 0 ENSG00000279774.1 TEC AL590483.3 2 OTTHUMG00000150374.2 +11271 chr1 HAVANA gene 244068820 244093026 468.0 - 0 ENSG00000229960.1 lincRNA AL590483.1 2 OTTHUMG00000150375.1 +11272 chr1 ENSEMBL gene 244103932 244104210 279.0 + 0 ENSG00000244066.3 misc_RNA RN7SL148P 3 +11273 chr1 HAVANA gene 244107365 244109011 567.0 + 0 ENSG00000237759.1 lincRNA AL590483.2 1 OTTHUMG00000040015.1 +11274 chr1 HAVANA gene 244352635 244389663 1151.0 + 0 ENSG00000173728.10 protein_coding C1orf100 2 OTTHUMG00000040104.1 +11275 chr1 HAVANA gene 244394976 244395660 685.0 - 0 ENSG00000225401.2 processed_pseudogene TGIF2P1 1 OTTHUMG00000040101.2 pseudo_consens,overlapping_locus +11276 chr1 HAVANA gene 244375100 244409592 642.0 - 0 ENSG00000240963.1 antisense AL645465.1 2 OTTHUMG00000040105.1 overlapping_locus +11277 chr1 HAVANA gene 244408494 244452134 3666.0 - 0 ENSG00000035687.9 protein_coding ADSS 2 OTTHUMG00000040102.2 overlapping_locus +11278 chr1 HAVANA gene 244598391 244598687 297.0 - 0 ENSG00000227735.1 processed_pseudogene CYCSP5 1 OTTHUMG00000040399.1 pseudo_consens +11279 chr1 HAVANA gene 244454377 244641177 4333.0 + 0 ENSG00000179397.17 protein_coding CATSPERE 2 OTTHUMG00000040103.2 +11280 chr1 HAVANA gene 244694432 244694720 289.0 - 0 ENSG00000232059.3 processed_pseudogene AL451007.1 1 OTTHUMG00000040400.2 pseudo_consens +11281 chr1 HAVANA gene 244652935 244709033 5104.0 + 0 ENSG00000121644.18 protein_coding DESI2 2 OTTHUMG00000040398.2 +11282 chr1 HAVANA gene 244729898 244730962 1065.0 - 0 ENSG00000284188.2 protein_coding AL451007.3 2 OTTHUMG00000191035.4 +11283 chr1 HAVANA gene 244731024 244731586 563.0 + 0 ENSG00000282317.1 lincRNA AL451007.2 2 OTTHUMG00000191036.1 +11284 chr1 HAVANA gene 244835322 244845057 4864.0 + 0 ENSG00000203667.9 protein_coding COX20 2 OTTHUMG00000040401.1 +11285 chr1 HAVANA gene 244840638 244864560 22512.0 - 0 ENSG00000153187.19 protein_coding HNRNPU 2 OTTHUMG00000040396.16 +11286 chr1 HAVANA gene 244864738 244865272 535.0 + 0 ENSG00000273175.1 lincRNA BX323046.1 2 OTTHUMG00000185822.1 +11287 chr1 ENSEMBL gene 244943910 244944216 307.0 + 0 ENSG00000201758.1 misc_RNA RN7SKP55 3 +11288 chr1 ENSEMBL gene 244954858 244954963 106.0 + 0 ENSG00000252073.1 snRNA RNU6-947P 3 +11289 chr1 HAVANA gene 244969350 244971088 1739.0 - 0 ENSG00000272195.1 antisense AL356512.1 2 OTTHUMG00000185820.1 +11290 chr1 ENSEMBL gene 245023015 245023118 104.0 + 0 ENSG00000252282.1 snRNA RNU6-1089P 3 +11291 chr1 ENSEMBL gene 245043928 245044032 105.0 + 0 ENSG00000251754.1 snRNA RNU6-999P 3 +11292 chr1 HAVANA gene 245123471 245124450 791.0 - 0 ENSG00000223353.2 processed_pseudogene AL589763.1 2 OTTHUMG00000040475.2 +11293 chr1 HAVANA gene 244969705 245127164 8607.0 + 0 ENSG00000203666.12 protein_coding EFCAB2 1 OTTHUMG00000040474.4 ncRNA_host +11294 chr1 ENSEMBL gene 245133927 245134090 164.0 - 0 ENSG00000201170.1 snRNA RNU1-132P 3 +11295 chr1 HAVANA gene 245206444 245234501 810.0 - 0 ENSG00000232192.1 antisense KIF26B-AS1 1 OTTHUMG00000040077.1 +11296 chr1 HAVANA gene 245282831 245283089 259.0 - 0 ENSG00000232793.2 processed_pseudogene DNAJC19P8 1 OTTHUMG00000040078.2 pseudo_consens +11297 chr1 HAVANA gene 245614773 245615145 271.0 - 0 ENSG00000238224.1 antisense AC104462.2 2 OTTHUMG00000040080.1 +11298 chr1 HAVANA gene 245673732 245676478 447.0 - 0 ENSG00000231612.1 antisense AC104462.1 1 OTTHUMG00000040081.1 +11299 chr1 HAVANA gene 245154985 245709431 14403.0 + 0 ENSG00000162849.15 protein_coding KIF26B 2 OTTHUMG00000040079.3 +11300 chr1 HAVANA gene 246025897 246035603 696.0 + 0 ENSG00000235096.2 antisense AC118555.1 1 OTTHUMG00000040510.2 +11301 chr1 HAVANA gene 246108626 246113866 581.0 + 0 ENSG00000226876.2 antisense AC092801.1 1 OTTHUMG00000040511.2 +11302 chr1 HAVANA gene 246178778 246179204 427.0 + 0 ENSG00000225222.2 processed_pseudogene CHCHD4P5 1 OTTHUMG00000057839.2 pseudo_consens +11303 chr1 ENSEMBL gene 246189014 246189118 105.0 - 0 ENSG00000202184.1 snRNA RNU6-1283P 3 +11304 chr1 HAVANA gene 246321663 246322438 361.0 - 0 ENSG00000230184.1 sense_intronic SMYD3-IT1 2 OTTHUMG00000040509.1 overlapping_locus +11305 chr1 ENSEMBL gene 246426006 246426119 114.0 - 0 ENSG00000207326.1 misc_RNA RF00019 3 +11306 chr1 HAVANA gene 245749342 246507312 5866.0 - 0 ENSG00000185420.18 protein_coding SMYD3 1 OTTHUMG00000040508.7 ncRNA_host,overlapping_locus +11307 chr1 HAVANA gene 246509038 246522592 1371.0 - 0 ENSG00000227728.2 unprocessed_pseudogene AL356583.1 2 OTTHUMG00000040557.1 overlapping_locus +11308 chr1 HAVANA gene 246516039 246524287 964.0 - 0 ENSG00000242042.1 lincRNA LINC01743 2 OTTHUMG00000040555.2 overlapping_locus +11309 chr1 HAVANA gene 246527030 246528155 417.0 + 0 ENSG00000230813.1 unprocessed_pseudogene AL356583.3 2 OTTHUMG00000040629.1 +11310 chr1 HAVANA gene 246528562 246528841 280.0 - 0 ENSG00000229112.1 unprocessed_pseudogene AL356583.2 2 OTTHUMG00000040556.1 +11311 chr1 HAVANA gene 246540560 246566324 1848.0 - 0 ENSG00000162851.7 protein_coding TFB2M 2 OTTHUMG00000040091.2 +11312 chr1 HAVANA gene 246605873 246608102 1960.0 + 0 ENSG00000225300.1 sense_intronic AL591623.1 2 OTTHUMG00000040132.1 overlapping_locus +11313 chr1 HAVANA gene 246632251 246632478 222.0 - 0 ENSG00000228955.2 processed_pseudogene AL591623.2 2 OTTHUMG00000040133.2 +11314 chr1 HAVANA gene 246566444 246668584 5922.0 + 0 ENSG00000162852.13 protein_coding CNST 2 OTTHUMG00000040090.3 overlapping_locus +11315 chr1 HAVANA gene 246682108 246685075 2968.0 + 0 ENSG00000260698.1 lincRNA AL591848.3 2 OTTHUMG00000176475.1 +11316 chr1 HAVANA gene 246690047 246691821 522.0 + 0 ENSG00000235021.1 lincRNA AL591848.2 1 OTTHUMG00000161248.1 +11317 chr1 HAVANA gene 246755511 246755832 322.0 - 0 ENSG00000228879.1 processed_pseudogene AL591848.1 1 OTTHUMG00000040518.1 pseudo_consens +11318 chr1 HAVANA gene 246724047 246768137 2503.0 + 0 ENSG00000143653.9 protein_coding SCCPDH 2 OTTHUMG00000040221.2 +11319 chr1 HAVANA gene 246772301 246775772 3472.0 + 0 ENSG00000260855.1 lincRNA AL591848.4 2 OTTHUMG00000176476.1 +11320 chr1 HAVANA gene 246776013 246792385 3984.0 + 0 ENSG00000227953.6 processed_transcript LINC01341 2 OTTHUMG00000040519.2 +11321 chr1 HAVANA gene 246818076 246818180 105.0 + 0 ENSG00000235386.1 unprocessed_pseudogene AC113174.1 2 OTTHUMG00000040520.2 +11322 chr1 ENSEMBL gene 246833448 246833529 82.0 - 0 ENSG00000252011.1 snoRNA RF00402 3 +11323 chr1 HAVANA gene 246771837 246839611 3525.0 - 0 ENSG00000223519.8 transcribed_unitary_pseudogene KIF28P 1 OTTHUMG00000153447.4 overlapping_locus +11324 chr1 HAVANA gene 246839098 246931967 9598.0 - 0 ENSG00000153207.15 protein_coding AHCTF1 1 OTTHUMG00000040706.4 +11325 chr1 HAVANA gene 246945547 247008093 3756.0 - 0 ENSG00000197472.14 protein_coding ZNF695 2 OTTHUMG00000040707.6 overlapping_locus +11326 chr1 HAVANA gene 247015068 247017291 1256.0 + 0 ENSG00000236775.1 processed_pseudogene AL512637.2 2 OTTHUMG00000040998.1 +11327 chr1 HAVANA gene 247042791 247044021 1231.0 + 0 ENSG00000215796.3 processed_pseudogene AL512637.1 1 OTTHUMG00000040997.1 pseudo_consens +11328 chr1 HAVANA gene 247036784 247078755 1994.0 - 0 ENSG00000277462.1 protein_coding ZNF670 2 OTTHUMG00000040868.3 overlapping_locus +11329 chr1 HAVANA gene 246945547 247078811 3197.0 - 0 ENSG00000135747.11 protein_coding ZNF670-ZNF695 2 OTTHUMG00000187277.1 overlapping_locus +11330 chr1 HAVANA gene 247085389 247086067 321.0 - 0 ENSG00000228982.1 unprocessed_pseudogene AL627095.1 2 OTTHUMG00000041114.1 +11331 chr1 HAVANA gene 247099962 247104372 1980.0 - 0 ENSG00000188295.14 protein_coding ZNF669 2 OTTHUMG00000040869.6 +11332 chr1 HAVANA gene 247110160 247112417 2258.0 - 0 ENSG00000221953.5 lincRNA C1orf229 2 OTTHUMG00000165196.2 +11333 chr1 HAVANA gene 247119669 247120278 610.0 + 0 ENSG00000226164.2 processed_pseudogene FGFR3P6 2 OTTHUMG00000041166.2 +11334 chr1 HAVANA gene 247121975 247172016 4517.0 - 0 ENSG00000196418.12 protein_coding ZNF124 2 OTTHUMG00000041112.3 +11335 chr1 HAVANA gene 247175256 247175525 270.0 + 0 ENSG00000224014.1 processed_pseudogene AL390728.3 1 OTTHUMG00000041167.1 pseudo_consens +11336 chr1 HAVANA gene 247183813 247185482 1670.0 - 0 ENSG00000215795.2 processed_pseudogene AL390728.2 1 OTTHUMG00000041113.1 pseudo_consens +11337 chr1 HAVANA gene 247187281 247188526 1246.0 - 0 ENSG00000259865.1 lincRNA AL390728.6 2 OTTHUMG00000176477.1 +11338 chr1 ENSEMBL gene 247201967 247202060 94.0 - 0 ENSG00000283881.1 miRNA MIR3916 3 +11339 chr1 ENSEMBL gene 247204570 247204661 92.0 - 0 ENSG00000252516.1 rRNA_pseudogene RNA5SP82 3 +11340 chr1 HAVANA gene 247189851 247210856 2160.0 - 0 ENSG00000227671.4 transcribed_unprocessed_pseudogene AL390728.4 2 OTTHUMG00000041115.3 overlapping_locus +11341 chr1 HAVANA gene 247229940 247231880 1941.0 + 0 ENSG00000214144.3 processed_pseudogene AL390728.1 1 OTTHUMG00000040999.2 pseudo_consens +11342 chr1 HAVANA gene 247236868 247237957 1090.0 - 0 ENSG00000235818.3 processed_pseudogene VN1R17P 2 OTTHUMG00000041163.1 overlapping_locus +11343 chr1 HAVANA gene 247210691 247241823 706.0 - 0 ENSG00000232347.1 lincRNA AL390728.5 2 OTTHUMG00000041449.1 overlapping_locus +11344 chr1 HAVANA gene 247255972 247257210 1239.0 + 0 ENSG00000197617.7 polymorphic_pseudogene VN1R5 2 OTTHUMG00000041165.15 +11345 chr1 ENSEMBL gene 247294835 247294941 107.0 + 0 ENSG00000202079.1 misc_RNA RF00019 3 +11346 chr1 HAVANA gene 247297412 247331846 10531.0 - 0 ENSG00000162714.12 protein_coding ZNF496 2 OTTHUMG00000041164.3 +11347 chr1 HAVANA gene 247416156 247449108 4757.0 + 0 ENSG00000162711.17 protein_coding NLRP3 2 OTTHUMG00000040647.7 +11348 chr1 HAVANA gene 247449118 247458105 6414.0 - 0 ENSG00000177535.8 protein_coding OR2B11 2 OTTHUMG00000040572.3 +11349 chr1 HAVANA gene 247488093 247492415 1647.0 + 0 ENSG00000203664.7 transcribed_unprocessed_pseudogene OR2W5 2 OTTHUMG00000040573.4 +11350 chr1 HAVANA gene 247524679 247532613 4179.0 - 0 ENSG00000284824.1 protein_coding GCSAML-AS1 2 OTTHUMG00000192365.1 overlapping_locus +11351 chr1 HAVANA gene 247524677 247536440 8509.0 - 0 ENSG00000196242.9 protein_coding OR2C3 2 OTTHUMG00000040579.3 overlapping_locus +11352 chr1 HAVANA gene 247507058 247577690 4680.0 + 0 ENSG00000169224.12 protein_coding GCSAML 1 OTTHUMG00000040648.5 +11353 chr1 HAVANA gene 247588360 247589313 954.0 + 0 ENSG00000177489.1 protein_coding OR2G2 2 OTTHUMG00000040575.2 +11354 chr1 HAVANA gene 247605586 247606515 930.0 + 0 ENSG00000177476.3 protein_coding OR2G3 2 OTTHUMG00000040576.2 +11355 chr1 ENSEMBL gene 247607126 247607201 76.0 - 0 ENSG00000283369.1 snRNA RF00026 3 +11356 chr1 HAVANA gene 247617143 247622372 3009.0 + 0 ENSG00000198452.7 transcribed_unprocessed_pseudogene OR14L1P 2 OTTHUMG00000040577.3 +11357 chr1 HAVANA gene 247565639 247640854 894.0 - 0 ENSG00000236817.5 antisense AL606804.1 1 OTTHUMG00000040653.1 ncRNA_host +11358 chr1 HAVANA gene 247666887 247667841 955.0 + 0 ENSG00000230411.1 unprocessed_pseudogene OR3D1P 2 OTTHUMG00000040200.1 +11359 chr1 HAVANA gene 247670812 247679739 2568.0 - 0 ENSG00000197437.4 protein_coding OR13G1 2 OTTHUMG00000040212.3 +11360 chr1 HAVANA gene 247711436 247716646 1762.0 - 0 ENSG00000169214.4 protein_coding OR6F1 2 OTTHUMG00000040213.3 overlapping_locus +11361 chr1 HAVANA gene 247711813 247723764 833.0 - 0 ENSG00000239395.2 protein_coding AC118470.1 2 OTTHUMG00000041416.3 overlapping_locus +11362 chr1 HAVANA gene 247722957 247724043 1087.0 - 0 ENSG00000241128.2 protein_coding OR14A2 2 OTTHUMG00000040207.3 overlapping_locus +11363 chr1 HAVANA gene 247738615 247739559 945.0 + 0 ENSG00000153230.4 protein_coding OR14K1 2 OTTHUMG00000040211.2 +11364 chr1 HAVANA gene 247639749 247747062 1882.0 + 0 ENSG00000235749.2 antisense AL390860.1 2 OTTHUMG00000040651.2 overlapping_locus +11365 chr1 HAVANA gene 247754846 247760556 3980.0 - 0 ENSG00000221888.4 protein_coding OR1C1 2 OTTHUMG00000040198.3 +11366 chr1 HAVANA gene 247770169 247779524 4888.0 + 0 ENSG00000228336.2 polymorphic_pseudogene OR9H1P 2 OTTHUMG00000040209.4 +11367 chr1 HAVANA gene 247814660 247824119 1367.0 - 0 ENSG00000196772.4 protein_coding OR14A16 2 OTTHUMG00000040199.3 +11368 chr1 HAVANA gene 247827486 247828502 1017.0 + 0 ENSG00000232908.3 processed_pseudogene HSD17B7P1 1 OTTHUMG00000040197.2 pseudo_consens +11369 chr1 HAVANA gene 247833349 247834288 940.0 - 0 ENSG00000230576.1 unprocessed_pseudogene OR6R1P 2 OTTHUMG00000040202.1 +11370 chr1 HAVANA gene 247840928 247841896 969.0 - 0 ENSG00000197591.3 protein_coding OR11L1 2 OTTHUMG00000040193.2 +11371 chr1 HAVANA gene 247857199 247878205 3225.0 + 0 ENSG00000162722.8 protein_coding TRIM58 2 OTTHUMG00000040203.1 +11372 chr1 HAVANA gene 247895587 247896531 945.0 + 0 ENSG00000238243.3 protein_coding OR2W3 2 OTTHUMG00000040204.2 +11373 chr1 HAVANA gene 247920252 247921956 1226.0 + 0 ENSG00000177462.7 protein_coding OR2T8 2 OTTHUMG00000040205.3 +11374 chr1 HAVANA gene 247924889 247935339 1873.0 + 0 ENSG00000177275.4 protein_coding OR2AJ1 2 OTTHUMG00000040206.3 +11375 chr1 HAVANA gene 247936061 247937513 1453.0 - 0 ENSG00000226191.3 processed_pseudogene CLK3P2 1 OTTHUMG00000040208.2 pseudo_consens +11376 chr1 HAVANA gene 247938973 247939659 687.0 + 0 ENSG00000224830.2 unprocessed_pseudogene OR2X1P 2 OTTHUMG00000040210.2 +11377 chr1 HAVANA gene 247948858 247949796 939.0 + 0 ENSG00000279263.1 protein_coding OR2L8 2 OTTHUMG00000040196.3 +11378 chr1 HAVANA gene 247965233 247966386 1154.0 + 0 ENSG00000187080.9 protein_coding OR2AK2 2 OTTHUMG00000040201.6 +11379 chr1 HAVANA gene 247974741 247975653 913.0 + 0 ENSG00000237492.1 unprocessed_pseudogene OR2L9P 2 OTTHUMG00000040215.1 +11380 chr1 HAVANA gene 247980872 247991204 1023.0 + 0 ENSG00000224227.3 transcribed_unprocessed_pseudogene OR2L1P 2 OTTHUMG00000040216.3 +11381 chr1 ENSEMBL gene 247997000 247997096 97.0 + 0 ENSG00000199442.1 misc_RNA RF00019 3 +11382 chr1 HAVANA gene 248003129 248004068 940.0 + 0 ENSG00000232215.2 unprocessed_pseudogene OR2L6P 2 OTTHUMG00000040217.2 +11383 chr1 HAVANA gene 248013660 248024276 2429.0 + 0 ENSG00000197454.2 protein_coding OR2L5 2 OTTHUMG00000040194.3 +11384 chr1 ENSEMBL gene 248029120 248029221 102.0 + 0 ENSG00000200085.1 misc_RNA RF00019 3 +11385 chr1 HAVANA gene 248030070 248042305 4375.0 + 0 ENSG00000203663.4 protein_coding OR2L2 2 OTTHUMG00000040214.3 +11386 chr1 ENSEMBL gene 248045788 248045889 102.0 + 0 ENSG00000200982.1 misc_RNA RF00019 3 +11387 chr1 HAVANA gene 248046836 248063407 2929.0 + 0 ENSG00000198128.4 protein_coding OR2L3 2 OTTHUMG00000040195.3 +11388 chr1 HAVANA gene 248083522 248087522 1114.0 - 0 ENSG00000197067.6 transcribed_unprocessed_pseudogene OR2T32P 1 OTTHUMG00000040455.4 pseudo_consens +11389 chr1 HAVANA gene 248095184 248101103 2019.0 + 0 ENSG00000196071.5 protein_coding OR2L13 2 OTTHUMG00000040446.4 +11390 chr1 HAVANA gene 248121932 248122882 951.0 + 0 ENSG00000177233.2 unprocessed_pseudogene OR2M1P 2 OTTHUMG00000040445.2 +11391 chr1 HAVANA gene 248145148 248146086 939.0 + 0 ENSG00000162727.3 protein_coding OR2M5 2 OTTHUMG00000040447.2 +11392 chr1 HAVANA gene 248174821 248181067 1229.0 + 0 ENSG00000198601.3 protein_coding OR2M2 2 OTTHUMG00000040460.4 +11393 chr1 HAVANA gene 248197265 248212925 9933.0 + 0 ENSG00000228198.3 protein_coding OR2M3 2 OTTHUMG00000040459.3 +11394 chr1 HAVANA gene 248231417 248244679 5934.0 + 0 ENSG00000171180.2 protein_coding OR2M4 2 OTTHUMG00000040456.3 +11395 chr1 HAVANA gene 248269917 248277976 4132.0 - 0 ENSG00000177212.4 protein_coding OR2T33 2 OTTHUMG00000040458.3 +11396 chr1 HAVANA gene 248290139 248303424 5722.0 - 0 ENSG00000177201.2 protein_coding OR2T12 2 OTTHUMG00000040457.3 +11397 chr1 HAVANA gene 248323630 248324568 939.0 - 0 ENSG00000177186.3 protein_coding OR2M7 2 OTTHUMG00000040461.2 +11398 chr1 HAVANA gene 248348775 248349713 939.0 + 0 ENSG00000177174.1 protein_coding OR14C36 2 OTTHUMG00000040463.2 +11399 chr1 HAVANA gene 248361581 248362627 1047.0 + 0 ENSG00000196944.4 protein_coding OR2T4 2 OTTHUMG00000040453.4 +11400 chr1 HAVANA gene 248375746 248391811 4670.0 + 0 ENSG00000198104.3 protein_coding OR2T6 2 OTTHUMG00000040448.3 +11401 chr1 HAVANA gene 248403048 248408020 2224.0 + 0 ENSG00000175143.4 protein_coding OR2T1 2 OTTHUMG00000040450.4 +11402 chr1 HAVANA gene 248436359 248444316 3733.0 + 0 ENSG00000227152.6 polymorphic_pseudogene OR2T7 2 OTTHUMG00000040449.4 +11403 chr1 HAVANA gene 248445512 248455725 3530.0 + 0 ENSG00000196240.4 protein_coding OR2T2 2 OTTHUMG00000040480.3 +11404 chr1 HAVANA gene 248473351 248474307 957.0 + 0 ENSG00000196539.3 protein_coding OR2T3 2 OTTHUMG00000040452.2 +11405 chr1 HAVANA gene 248484245 248485484 967.0 - 0 ENSG00000229255.1 lincRNA AC138089.1 2 OTTHUMG00000041417.1 +11406 chr1 HAVANA gene 248488589 248491113 2525.0 + 0 ENSG00000203661.4 protein_coding OR2T5 2 OTTHUMG00000040481.3 +11407 chr1 HAVANA gene 248498308 248498649 342.0 + 0 ENSG00000271934.2 unprocessed_pseudogene OR2AS2P 2 OTTHUMG00000185769.2 +11408 chr1 HAVANA gene 248508073 248527337 6197.0 + 0 ENSG00000188558.6 protein_coding OR2G6 2 OTTHUMG00000040462.3 +11409 chr1 HAVANA gene 248549444 248549762 319.0 - 0 ENSG00000227102.2 unprocessed_pseudogene OR2AS1P 2 OTTHUMG00000040385.2 +11410 chr1 HAVANA gene 248556912 248562772 2637.0 - 0 ENSG00000182783.5 protein_coding OR2T29 2 OTTHUMG00000040382.3 +11411 chr1 HAVANA gene 248548756 248563839 1331.0 + 0 ENSG00000224521.1 antisense AC098483.1 2 OTTHUMG00000040386.1 +11412 chr1 HAVANA gene 248573801 248574757 957.0 - 0 ENSG00000183310.3 protein_coding OR2T34 2 OTTHUMG00000040387.2 +11413 chr1 ENSEMBL gene 248594925 248595033 109.0 - 0 ENSG00000201602.1 misc_RNA RF00019 3 +11414 chr1 HAVANA gene 248590487 248597700 3522.0 - 0 ENSG00000184022.4 protein_coding OR2T10 2 OTTHUMG00000040388.3 ncRNA_host +11415 chr1 HAVANA gene 248601416 248601869 454.0 + 0 ENSG00000271701.1 processed_pseudogene AC098483.2 1 OTTHUMG00000184486.1 pseudo_consens +11416 chr1 HAVANA gene 248623557 248635091 3770.0 - 0 ENSG00000279301.4 protein_coding OR2T11 2 OTTHUMG00000040384.4 +11417 chr1 HAVANA gene 248636356 248645278 2957.0 - 0 ENSG00000177151.4 protein_coding OR2T35 2 OTTHUMG00000040380.3 +11418 chr1 HAVANA gene 248649838 248655528 1285.0 - 0 ENSG00000187701.4 protein_coding OR2T27 2 OTTHUMG00000040376.3 +11419 chr1 HAVANA gene 248681369 248682304 936.0 - 0 ENSG00000189181.4 protein_coding OR14I1 2 OTTHUMG00000040378.2 +11420 chr1 HAVANA gene 248708202 248708641 440.0 + 0 ENSG00000276520.1 processed_pseudogene CR589904.2 2 OTTHUMG00000187561.1 +11421 chr1 HAVANA gene 248691760 248716755 923.0 + 0 ENSG00000229703.6 transcribed_unitary_pseudogene CR589904.1 1 OTTHUMG00000153448.5 overlapping_locus +11422 chr1 HAVANA gene 248721993 248722201 209.0 - 0 ENSG00000242529.1 processed_pseudogene AHCYP8 2 OTTHUMG00000040381.2 overlapping_locus +11423 chr1 HAVANA gene 248718649 248755739 2237.0 - 0 ENSG00000259823.5 protein_coding LYPD8 2 OTTHUMG00000174833.4 overlapping_locus +11424 chr1 HAVANA gene 248771635 248773792 2158.0 - 0 ENSG00000229663.1 processed_pseudogene DPY19L4P1 1 OTTHUMG00000040383.1 pseudo_consens +11425 chr1 ENSEMBL gene 248826377 248826443 67.0 + 0 ENSG00000264500.1 miRNA MIR3124 3 +11426 chr1 HAVANA gene 248810446 248826633 6442.0 - 0 ENSG00000175137.10 protein_coding SH3BP5L 2 OTTHUMG00000040389.2 +11427 chr1 HAVANA gene 248838210 248849517 3741.0 + 0 ENSG00000171161.12 protein_coding ZNF672 2 OTTHUMG00000040377.3 +11428 chr1 HAVANA gene 248850006 248859144 3929.0 - 0 ENSG00000171163.15 protein_coding ZNF692 1 OTTHUMG00000040423.3 +11429 chr1 HAVANA gene 248859164 248864796 462.0 + 0 ENSG00000227237.1 antisense AL672291.1 1 OTTHUMG00000040425.1 +11430 chr1 ENSEMBL gene 248912690 248912795 106.0 - 0 ENSG00000200495.1 snRNA RNU6-1205P 3 +11431 chr1 HAVANA gene 248906196 248919946 3651.0 + 0 ENSG00000185220.11 protein_coding PGBD2 2 OTTHUMG00000040424.1 +11432 chr1 HAVANA gene 248936581 248937043 463.0 + 0 ENSG00000233084.2 processed_pseudogene RPL23AP25 1 OTTHUMG00000040422.1 pseudo_consens +11433 chr10 HAVANA gene 14061 16544 390.0 - 0 ENSG00000260370.1 lincRNA AC215217.1 2 OTTHUMG00000174801.2 +11434 chr10 HAVANA gene 44712 46884 747.0 + 0 ENSG00000237297.1 unprocessed_pseudogene AL713922.1 2 OTTHUMG00000017522.1 +11435 chr10 HAVANA gene 46892 74163 2981.0 - 0 ENSG00000261456.5 protein_coding TUBB8 2 OTTHUMG00000174803.2 +11436 chr10 HAVANA gene 80394 86265 1312.0 - 0 ENSG00000232420.2 unprocessed_pseudogene IL9RP2 2 OTTHUMG00000017525.1 +11437 chr10 HAVANA gene 147820 148751 716.0 - 0 ENSG00000276662.1 unprocessed_pseudogene AL713922.2 2 OTTHUMG00000187769.1 +11438 chr10 ENSEMBL gene 154831 154943 113.0 - 0 ENSG00000212331.1 rRNA_pseudogene RNA5SP297 3 +11439 chr10 HAVANA gene 134465 254637 5300.0 + 0 ENSG00000015171.19 protein_coding ZMYND11 2 OTTHUMG00000017526.8 +11440 chr10 ENSEMBL gene 282015 282125 111.0 - 0 ENSG00000201861.1 rRNA_pseudogene RNA5SP298 3 +11441 chr10 ENSEMBL gene 430239 430504 266.0 - 0 ENSG00000239822.3 misc_RNA RN7SL754P 3 +11442 chr10 HAVANA gene 437561 441170 558.0 + 0 ENSG00000233021.2 antisense AL669841.1 2 OTTHUMG00000017527.2 +11443 chr10 HAVANA gene 628638 631255 1657.0 + 0 ENSG00000225140.1 antisense AL358216.1 1 OTTHUMG00000017530.1 +11444 chr10 ENSEMBL gene 641689 641778 90.0 - 0 ENSG00000263511.1 miRNA MIR5699 3 +11445 chr10 HAVANA gene 649948 669581 9247.0 + 0 ENSG00000180525.11 protein_coding PRR26 1 OTTHUMG00000017529.4 overlapping_locus +11446 chr10 HAVANA gene 274190 689668 8563.0 - 0 ENSG00000151240.16 protein_coding DIP2C 2 OTTHUMG00000017532.5 ncRNA_host +11447 chr10 HAVANA gene 743992 744958 424.0 + 0 ENSG00000231601.1 lincRNA AL157709.1 2 OTTHUMG00000017531.2 +11448 chr10 HAVANA gene 806914 931705 12836.0 - 0 ENSG00000107929.14 protein_coding LARP4B 2 OTTHUMG00000017534.6 +11449 chr10 HAVANA gene 933026 942743 407.0 + 0 ENSG00000229869.1 antisense AL359878.2 2 OTTHUMG00000017533.1 +11450 chr10 HAVANA gene 971146 988341 4964.0 - 0 ENSG00000205740.2 processed_transcript AL359878.1 2 OTTHUMG00000187410.1 +11451 chr10 HAVANA gene 988019 1019936 6540.0 + 0 ENSG00000107937.18 protein_coding GTPBP4 2 OTTHUMG00000017538.5 +11452 chr10 HAVANA gene 1018907 1025859 1359.0 - 0 ENSG00000148377.5 protein_coding IDI2 2 OTTHUMG00000017537.1 +11453 chr10 HAVANA gene 1022666 1044201 1276.0 + 0 ENSG00000232656.7 antisense IDI2-AS1 2 OTTHUMG00000017535.2 +11454 chr10 HAVANA gene 1039152 1049170 4345.0 - 0 ENSG00000067064.11 protein_coding IDI1 2 OTTHUMG00000017536.4 +11455 chr10 HAVANA gene 1049538 1132384 6000.0 + 0 ENSG00000047056.15 protein_coding WDR37 2 OTTHUMG00000017540.6 +11456 chr10 HAVANA gene 1159768 1164789 2911.0 + 0 ENSG00000229205.3 lincRNA LINC00200 2 OTTHUMG00000017539.5 +11457 chr10 HAVANA gene 1290018 1293002 2985.0 - 0 ENSG00000282390.1 sense_intronic AL392083.1 2 OTTHUMG00000191406.1 +11458 chr10 HAVANA gene 1361001 1361637 359.0 - 0 ENSG00000233052.1 sense_intronic AL513304.1 1 OTTHUMG00000017541.1 overlapping_locus +11459 chr10 HAVANA gene 1526637 1556984 1125.0 + 0 ENSG00000205696.4 antisense ADARB2-AS1 2 OTTHUMG00000017542.2 +11460 chr10 HAVANA gene 1177318 1737476 10513.0 - 0 ENSG00000185736.15 protein_coding ADARB2 2 OTTHUMG00000017543.2 overlapping_locus +11461 chr10 HAVANA gene 2005473 2014348 2767.0 - 0 ENSG00000234962.5 lincRNA LINC00700 2 OTTHUMG00000017547.2 +11462 chr10 ENSEMBL gene 2076019 2076089 71.0 - 0 ENSG00000278069.1 miRNA MIR6072 3 +11463 chr10 HAVANA gene 2071845 2081097 432.0 + 0 ENSG00000226694.2 lincRNA AL441943.1 2 OTTHUMG00000017544.1 +11464 chr10 ENSEMBL gene 2098167 2098269 103.0 + 0 ENSG00000252998.1 snRNA RNU6-889P 3 +11465 chr10 HAVANA gene 2166332 2169460 2321.0 + 0 ENSG00000227912.1 lincRNA AL441943.2 2 OTTHUMG00000017545.1 +11466 chr10 HAVANA gene 2169140 2189474 587.0 - 0 ENSG00000231326.6 lincRNA AL441943.3 2 OTTHUMG00000017546.2 +11467 chr10 ENSEMBL gene 2199387 2199488 102.0 + 0 ENSG00000212156.1 snRNA RNU6-576P 3 +11468 chr10 HAVANA gene 2305083 2315075 742.0 - 0 ENSG00000234556.1 lincRNA LINC00701 2 OTTHUMG00000017548.1 +11469 chr10 HAVANA gene 2446253 2447352 764.0 - 0 ENSG00000234170.5 lincRNA AC024908.1 1 OTTHUMG00000017549.1 +11470 chr10 HAVANA gene 2499721 2500570 332.0 + 0 ENSG00000237500.1 lincRNA AL713851.2 1 OTTHUMG00000017550.1 +11471 chr10 HAVANA gene 2501783 2567239 1051.0 + 0 ENSG00000235281.1 lincRNA AL713851.1 2 OTTHUMG00000017551.1 +11472 chr10 HAVANA gene 2936021 2936441 421.0 + 0 ENSG00000231743.1 processed_pseudogene AC026396.1 2 OTTHUMG00000017552.1 +11473 chr10 HAVANA gene 3010531 3013111 608.0 + 0 ENSG00000234182.1 lincRNA AL731533.1 2 OTTHUMG00000017554.1 +11474 chr10 HAVANA gene 3065424 3066001 578.0 - 0 ENSG00000273001.1 lincRNA AL731533.2 2 OTTHUMG00000186076.1 +11475 chr10 HAVANA gene 3066333 3137712 4836.0 + 0 ENSG00000067057.16 protein_coding PFKP 2 OTTHUMG00000017556.6 overlapping_locus +11476 chr10 HAVANA gene 3134566 3145166 447.0 + 0 ENSG00000278419.1 antisense AL451164.3 2 OTTHUMG00000188640.1 +11477 chr10 HAVANA gene 3141632 3167972 4370.0 + 0 ENSG00000237399.7 antisense PITRM1-AS1 2 OTTHUMG00000017558.3 overlapping_locus +11478 chr10 HAVANA gene 3137728 3172841 6979.0 - 0 ENSG00000107959.15 protein_coding PITRM1 2 OTTHUMG00000017557.2 +11479 chr10 HAVANA gene 3223816 3227407 597.0 + 0 ENSG00000236968.1 lincRNA AL451164.2 2 OTTHUMG00000017561.1 +11480 chr10 HAVANA gene 3232388 3257932 2361.0 - 0 ENSG00000226762.2 lincRNA AL451164.1 2 OTTHUMG00000017555.4 +11481 chr10 HAVANA gene 3266003 3267015 463.0 + 0 ENSG00000227338.1 lincRNA AL139280.1 1 OTTHUMG00000017562.1 +11482 chr10 HAVANA gene 3486894 3502838 832.0 - 0 ENSG00000233321.1 lincRNA AL357833.1 2 OTTHUMG00000017563.1 +11483 chr10 HAVANA gene 3532094 3537031 723.0 - 0 ENSG00000236892.1 lincRNA AL357833.2 2 OTTHUMG00000017564.1 +11484 chr10 HAVANA gene 3751067 3763226 759.0 + 0 ENSG00000229672.2 antisense AL450322.2 2 OTTHUMG00000017566.2 +11485 chr10 HAVANA gene 3767915 3768751 313.0 + 0 ENSG00000228353.1 antisense AL450322.1 1 OTTHUMG00000017565.1 +11486 chr10 HAVANA gene 3775996 3785281 6139.0 - 0 ENSG00000067082.14 protein_coding KLF6 2 OTTHUMG00000017567.1 +11487 chr10 HAVANA gene 3833950 3834728 536.0 + 0 ENSG00000230573.1 lincRNA AL513303.2 1 OTTHUMG00000017568.1 +11488 chr10 HAVANA gene 3912027 3935813 1058.0 + 0 ENSG00000226005.4 lincRNA AL513303.1 1 OTTHUMG00000017569.3 +11489 chr10 ENSEMBL gene 3991160 3991259 100.0 + 0 ENSG00000274809.1 miRNA MIR6078 3 +11490 chr10 HAVANA gene 4024940 4028394 633.0 + 0 ENSG00000227101.1 lincRNA AC025822.1 1 OTTHUMG00000017570.1 +11491 chr10 HAVANA gene 4051726 4089013 2287.0 + 0 ENSG00000236990.1 lincRNA AC025822.2 2 OTTHUMG00000017571.1 +11492 chr10 HAVANA gene 4201141 4243912 6785.0 - 0 ENSG00000233117.2 lincRNA LINC00702 1 OTTHUMG00000017572.3 +11493 chr10 HAVANA gene 4384246 4410612 2462.0 + 0 ENSG00000224382.1 lincRNA LINC00703 1 OTTHUMG00000017573.1 +11494 chr10 HAVANA gene 4415305 4426179 691.0 - 0 ENSG00000230096.1 lincRNA AC022535.1 2 OTTHUMG00000017574.1 +11495 chr10 ENSEMBL gene 4514952 4515057 106.0 + 0 ENSG00000207124.1 snRNA RNU6-163P 3 +11496 chr10 HAVANA gene 4655427 4662419 1745.0 + 0 ENSG00000225269.2 lincRNA LINC00705 2 OTTHUMG00000017575.1 +11497 chr10 HAVANA gene 4650185 4678154 1920.0 - 0 ENSG00000231298.6 lincRNA MANCR 2 OTTHUMG00000017576.2 +11498 chr10 HAVANA gene 4786629 4848062 2417.0 + 0 ENSG00000165568.17 protein_coding AKR1E2 1 OTTHUMG00000017577.11 +11499 chr10 HAVANA gene 4871901 4891975 983.0 - 0 ENSG00000151631.8 unprocessed_pseudogene AKR1C6P 2 OTTHUMG00000017578.1 +11500 chr10 ENSEMBL gene 4962436 4962568 133.0 - 0 ENSG00000238840.1 snoRNA RF00096 3 +11501 chr10 HAVANA gene 4963253 4983283 8765.0 + 0 ENSG00000187134.13 protein_coding AKR1C1 2 OTTHUMG00000017580.3 +11502 chr10 HAVANA gene 4995488 4997380 482.0 + 0 ENSG00000224251.6 antisense AL391427.1 2 OTTHUMG00000017586.2 +11503 chr10 ENSEMBL gene 5004710 5004842 133.0 + 0 ENSG00000239148.1 snoRNA RF00096 3 +11504 chr10 HAVANA gene 4987400 5018031 6461.0 - 0 ENSG00000151632.17 protein_coding AKR1C2 2 OTTHUMG00000017584.4 +11505 chr10 ENSEMBL gene 5093408 5093543 136.0 - 0 ENSG00000239142.1 snoRNA RF00096 3 +11506 chr10 HAVANA gene 5035354 5107686 4532.0 + 0 ENSG00000196139.13 protein_coding AKR1C3 2 OTTHUMG00000017585.6 overlapping_locus +11507 chr10 HAVANA gene 5122087 5135226 609.0 - 0 ENSG00000225418.1 unprocessed_pseudogene AKR1C5P 2 OTTHUMG00000017583.1 +11508 chr10 HAVANA gene 5154140 5185187 2335.0 - 0 ENSG00000264006.8 protein_coding AKR1C8P 2 OTTHUMG00000184213.3 +11509 chr10 HAVANA gene 5207169 5207742 574.0 + 0 ENSG00000228291.1 processed_pseudogene ARL4AP3 1 OTTHUMG00000017589.1 pseudo_consens,overlapping_locus +11510 chr10 HAVANA gene 5195462 5218949 1914.0 + 0 ENSG00000198610.10 protein_coding AKR1C4 2 OTTHUMG00000017591.2 overlapping_locus +11511 chr10 HAVANA gene 5234358 5263408 680.0 + 0 ENSG00000231039.2 lincRNA AL355303.1 2 OTTHUMG00000017587.2 +11512 chr10 HAVANA gene 5266033 5271236 692.0 - 0 ENSG00000224034.1 lincRNA LINC02561 2 OTTHUMG00000017590.1 +11513 chr10 HAVANA gene 5275173 5288470 895.0 - 0 ENSG00000215267.8 transcribed_unprocessed_pseudogene AKR1C7P 2 OTTHUMG00000017588.3 +11514 chr10 HAVANA gene 5304431 5304865 435.0 - 0 ENSG00000223987.1 processed_pseudogene RPL26P28 1 OTTHUMG00000017593.1 pseudo_consens +11515 chr10 HAVANA gene 5346651 5347277 627.0 + 0 ENSG00000280450.1 TEC AL683826.1 2 OTTHUMG00000176122.1 +11516 chr10 HAVANA gene 5365009 5374692 1200.0 + 0 ENSG00000178473.6 protein_coding UCN3 2 OTTHUMG00000017594.2 +11517 chr10 HAVANA gene 5393098 5404830 1798.0 - 0 ENSG00000178462.11 protein_coding TUBAL3 2 OTTHUMG00000017595.3 +11518 chr10 HAVANA gene 5412551 5458463 4175.0 + 0 ENSG00000173848.18 protein_coding NET1 2 OTTHUMG00000017596.3 +11519 chr10 HAVANA gene 5498697 5499555 859.0 - 0 ENSG00000178372.7 protein_coding CALML5 2 OTTHUMG00000017598.1 retrogene +11520 chr10 HAVANA gene 5524976 5525742 595.0 - 0 ENSG00000256462.1 antisense AL732437.1 2 OTTHUMG00000168091.1 overlapping_locus +11521 chr10 HAVANA gene 5514244 5526246 4757.0 - 0 ENSG00000205488.8 antisense CALML3-AS1 2 OTTHUMG00000168090.1 overlapping_locus +11522 chr10 HAVANA gene 5524009 5526771 2763.0 + 0 ENSG00000178363.4 protein_coding CALML3 2 OTTHUMG00000017597.1 retrogene +11523 chr10 HAVANA gene 5594991 5596118 697.0 - 0 ENSG00000242147.1 lincRNA AL365356.5 1 OTTHUMG00000017601.3 +11524 chr10 HAVANA gene 5608475 5610793 613.0 - 0 ENSG00000231483.1 lincRNA AL365356.4 2 OTTHUMG00000017600.1 +11525 chr10 HAVANA gene 5616862 5618161 657.0 - 0 ENSG00000228951.1 lincRNA AL365356.3 2 OTTHUMG00000017599.1 +11526 chr10 HAVANA gene 5624931 5625126 196.0 + 0 ENSG00000228685.1 processed_pseudogene AL365356.2 2 OTTHUMG00000017602.1 +11527 chr10 ENSEMBL gene 5631463 5631755 293.0 + 0 ENSG00000240577.3 misc_RNA RN7SL445P 3 +11528 chr10 HAVANA gene 5638867 5666595 3003.0 - 0 ENSG00000196372.12 protein_coding ASB13 2 OTTHUMG00000017603.3 +11529 chr10 HAVANA gene 5712174 5744067 1412.0 - 0 ENSG00000226647.2 antisense AL365356.1 2 OTTHUMG00000017604.2 +11530 chr10 HAVANA gene 5684838 5763740 10960.0 + 0 ENSG00000108021.20 protein_coding FAM208B 1 OTTHUMG00000017605.6 +11531 chr10 HAVANA gene 5776071 5776858 788.0 + 0 ENSG00000270427.1 processed_pseudogene NRBF2P5 1 OTTHUMG00000184677.1 pseudo_consens +11532 chr10 HAVANA gene 5813985 5814441 276.0 + 0 ENSG00000272764.1 lincRNA AL596094.1 2 OTTHUMG00000186103.1 +11533 chr10 HAVANA gene 5765223 5842132 4033.0 - 0 ENSG00000057608.16 protein_coding GDI2 1 OTTHUMG00000017607.9 +11534 chr10 HAVANA gene 5861805 5862594 489.0 - 0 ENSG00000240180.1 processed_pseudogene RPL12P28 2 OTTHUMG00000017606.2 overlapping_locus +11535 chr10 HAVANA gene 5861617 5889906 3059.0 - 0 ENSG00000134461.15 protein_coding ANKRD16 2 OTTHUMG00000017610.3 overlapping_locus +11536 chr10 HAVANA gene 5890203 5937594 6676.0 + 0 ENSG00000134452.19 protein_coding FBH1 2 OTTHUMG00000017609.5 +11537 chr10 HAVANA gene 5934270 5945900 3912.0 - 0 ENSG00000232807.2 antisense AL137186.2 1 OTTHUMG00000017611.2 +11538 chr10 HAVANA gene 5943639 5978187 3634.0 - 0 ENSG00000134470.20 protein_coding IL15RA 1 OTTHUMG00000017612.6 +11539 chr10 ENSEMBL gene 6017054 6017194 141.0 - 0 ENSG00000251922.1 snoRNA RF00397 3 +11540 chr10 HAVANA gene 6025978 6036427 480.0 + 0 ENSG00000229664.1 antisense AL137186.1 2 OTTHUMG00000017608.1 +11541 chr10 HAVANA gene 6010689 6062370 3962.0 - 0 ENSG00000134460.17 protein_coding IL2RA 2 OTTHUMG00000017616.4 ncRNA_host +11542 chr10 HAVANA gene 6071514 6071918 405.0 - 0 ENSG00000214015.3 processed_pseudogene RPL32P23 1 OTTHUMG00000017619.1 pseudo_consens +11543 chr10 HAVANA gene 6088987 6117457 6419.0 + 0 ENSG00000134453.15 protein_coding RBM17 2 OTTHUMG00000017618.3 +11544 chr10 ENSEMBL gene 6149623 6149940 318.0 + 0 ENSG00000201581.1 misc_RNA RN7SKP78 3 +11545 chr10 ENSEMBL gene 6152207 6152262 56.0 - 0 ENSG00000283634.1 miRNA MIR3155B 3 +11546 chr10 ENSEMBL gene 6152196 6152277 82.0 + 0 ENSG00000263628.1 miRNA MIR3155A 3 +11547 chr10 HAVANA gene 6197612 6202693 438.0 - 0 ENSG00000213994.3 antisense AL157395.1 1 OTTHUMG00000017613.1 +11548 chr10 ENSEMBL gene 6245731 6245831 101.0 - 0 ENSG00000238366.1 misc_RNA RF00019 3 +11549 chr10 HAVANA gene 6144934 6254644 6114.0 + 0 ENSG00000170525.20 protein_coding PFKFB3 2 OTTHUMG00000017621.5 ncRNA_host +11550 chr10 HAVANA gene 6293100 6294684 890.0 - 0 ENSG00000226705.1 processed_pseudogene SDCBPP1 1 OTTHUMG00000017620.1 pseudo_consens +11551 chr10 HAVANA gene 6277687 6335982 3086.0 + 0 ENSG00000215244.2 lincRNA AL137145.2 2 OTTHUMG00000186111.1 +11552 chr10 HAVANA gene 6350316 6352762 2447.0 + 0 ENSG00000212743.2 lincRNA AL137145.1 2 OTTHUMG00000187413.1 +11553 chr10 HAVANA gene 6427143 6580301 3295.0 - 0 ENSG00000065675.14 protein_coding PRKCQ 2 OTTHUMG00000017623.1 +11554 chr10 HAVANA gene 6580419 6616452 3892.0 + 0 ENSG00000237943.6 processed_transcript PRKCQ-AS1 2 OTTHUMG00000017622.4 +11555 chr10 HAVANA gene 6618716 6625346 500.0 + 0 ENSG00000225948.2 lincRNA AL158210.1 2 OTTHUMG00000017624.2 +11556 chr10 HAVANA gene 6709530 6740532 4118.0 + 0 ENSG00000223784.2 lincRNA LINP1 1 OTTHUMG00000017625.2 overlapping_locus +11557 chr10 HAVANA gene 6774307 6779180 699.0 - 0 ENSG00000281186.1 lincRNA LINC00706 2 OTTHUMG00000189562.1 +11558 chr10 HAVANA gene 6682513 6823789 1154.0 + 0 ENSG00000285743.1 lincRNA AL158210.2 2 OTTHUMG00000192634.1 overlapping_locus +11559 chr10 HAVANA gene 6737418 6840712 614.0 + 0 ENSG00000285988.1 lincRNA AL392086.3 2 OTTHUMG00000192637.1 overlapping_locus +11560 chr10 HAVANA gene 6779608 6877888 1231.0 + 0 ENSG00000285845.1 lincRNA AL392086.2 2 OTTHUMG00000017627.3 overlapping_locus +11561 chr10 HAVANA gene 6779549 6879450 9833.0 + 0 ENSG00000238266.2 lincRNA LINC00707 2 OTTHUMG00000193424.1 overlapping_locus +11562 chr10 HAVANA gene 6891457 6920472 299.0 - 0 ENSG00000234248.1 lincRNA AL392086.1 2 OTTHUMG00000017626.1 +11563 chr10 HAVANA gene 7097152 7097675 436.0 + 0 ENSG00000223581.1 lincRNA AL590095.1 2 OTTHUMG00000017628.1 +11564 chr10 HAVANA gene 7154120 7154236 117.0 + 0 ENSG00000270811.1 processed_pseudogene AL590095.2 2 OTTHUMG00000184676.1 +11565 chr10 HAVANA gene 7295106 7295290 185.0 - 0 ENSG00000235141.1 processed_pseudogene COX6CP17 1 OTTHUMG00000017629.1 pseudo_consens,overlapping_locus +11566 chr10 HAVANA gene 7158624 7411486 9953.0 - 0 ENSG00000198879.11 protein_coding SFMBT2 2 OTTHUMG00000017630.2 overlapping_locus +11567 chr10 HAVANA gene 7411599 7413467 1869.0 + 0 ENSG00000278982.1 TEC AL139125.2 2 OTTHUMG00000176128.1 +11568 chr10 HAVANA gene 7445558 7471942 557.0 - 0 ENSG00000232591.1 lincRNA AL139125.1 2 OTTHUMG00000017631.1 +11569 chr10 ENSEMBL gene 7486703 7486809 107.0 - 0 ENSG00000207453.1 snRNA RNU6-535P 3 +11570 chr10 HAVANA gene 7533207 7536565 714.0 + 0 ENSG00000230121.1 antisense AL445070.1 1 OTTHUMG00000017632.1 +11571 chr10 HAVANA gene 7559270 7666998 14628.0 - 0 ENSG00000123243.14 protein_coding ITIH5 1 OTTHUMG00000017635.6 +11572 chr10 HAVANA gene 7703269 7749520 3378.0 + 0 ENSG00000151655.18 protein_coding ITIH2 1 OTTHUMG00000017633.4 +11573 chr10 HAVANA gene 7750962 7787981 6844.0 - 0 ENSG00000151657.11 protein_coding KIN 2 OTTHUMG00000017634.4 +11574 chr10 HAVANA gene 7788129 7807815 2326.0 + 0 ENSG00000165629.19 protein_coding ATP5F1C 2 OTTHUMG00000017639.2 +11575 chr10 HAVANA gene 7833618 7833957 340.0 - 0 ENSG00000233990.1 processed_pseudogene AL353754.1 1 OTTHUMG00000017638.1 pseudo_consens +11576 chr10 HAVANA gene 7818504 8016627 4872.0 + 0 ENSG00000165632.7 protein_coding TAF3 2 OTTHUMG00000017643.1 +11577 chr10 HAVANA gene 8051541 8053084 402.0 + 0 ENSG00000232638.1 lincRNA AL390294.1 1 OTTHUMG00000017642.1 +11578 chr10 HAVANA gene 8050450 8053484 2372.0 - 0 ENSG00000197308.9 lincRNA GATA3-AS1 2 OTTHUMG00000156966.1 +11579 chr10 HAVANA gene 8045378 8075203 3436.0 + 0 ENSG00000107485.16 protein_coding GATA3 2 OTTHUMG00000017640.7 +11580 chr10 HAVANA gene 8161260 8162192 933.0 + 0 ENSG00000225053.1 processed_pseudogene PRPF38AP1 1 OTTHUMG00000017644.1 pseudo_consens +11581 chr10 HAVANA gene 8259331 8268305 916.0 - 0 ENSG00000232170.5 lincRNA LINC00708 2 OTTHUMG00000017645.1 +11582 chr10 HAVANA gene 8298897 8301667 901.0 + 0 ENSG00000226861.1 lincRNA AL390835.1 1 OTTHUMG00000017646.1 +11583 chr10 HAVANA gene 8400860 8461863 430.0 + 0 ENSG00000226990.1 lincRNA AC025946.1 2 OTTHUMG00000017648.1 +11584 chr10 HAVANA gene 8472719 8472952 234.0 + 0 ENSG00000271251.1 processed_pseudogene AC025946.2 1 OTTHUMG00000184675.1 pseudo_consens +11585 chr10 HAVANA gene 8513687 8515106 1420.0 - 0 ENSG00000213771.3 processed_pseudogene KRT8P37 1 OTTHUMG00000017647.1 pseudo_consens +11586 chr10 HAVANA gene 8619933 8620608 676.0 + 0 ENSG00000236420.1 processed_pseudogene CHCHD3P1 1 OTTHUMG00000017649.1 pseudo_consens +11587 chr10 ENSEMBL gene 8656716 8656831 116.0 - 0 ENSG00000212505.1 rRNA_pseudogene RNA5SP299 3 +11588 chr10 HAVANA gene 8724010 8724288 279.0 + 0 ENSG00000270234.1 processed_pseudogene AL355333.1 1 OTTHUMG00000184672.1 pseudo_consens +11589 chr10 HAVANA gene 8897989 8914596 366.0 + 0 ENSG00000234752.1 lincRNA AC044784.2 2 OTTHUMG00000017650.1 +11590 chr10 HAVANA gene 8970125 8973468 677.0 + 0 ENSG00000223808.1 lincRNA AC044784.1 2 OTTHUMG00000017651.1 +11591 chr10 HAVANA gene 9275833 9287057 494.0 + 0 ENSG00000230014.1 lincRNA LINC00709 2 OTTHUMG00000017652.1 +11592 chr10 HAVANA gene 9721963 9724416 2454.0 - 0 ENSG00000235838.1 processed_pseudogene HSP90AB7P 1 OTTHUMG00000017653.1 pseudo_consens +11593 chr10 HAVANA gene 9758783 9878060 772.0 - 0 ENSG00000228636.2 lincRNA AL358214.1 2 OTTHUMG00000017654.2 +11594 chr10 HAVANA gene 10058722 10063502 575.0 + 0 ENSG00000224788.1 lincRNA AL138775.1 2 OTTHUMG00000017655.1 +11595 chr10 HAVANA gene 10174230 10174577 348.0 + 0 ENSG00000229919.3 processed_pseudogene ELOCP3 1 OTTHUMG00000017656.1 pseudo_consens +11596 chr10 ENSEMBL gene 10232611 10232712 102.0 + 0 ENSG00000200849.1 misc_RNA RF00019 3 +11597 chr10 HAVANA gene 10257169 10257466 298.0 - 0 ENSG00000272436.1 processed_pseudogene CUX2P1 2 OTTHUMG00000185574.1 +11598 chr10 HAVANA gene 10365180 10366487 335.0 - 0 ENSG00000234306.1 lincRNA AL583859.1 1 OTTHUMG00000017657.1 +11599 chr10 HAVANA gene 10394670 10395737 1068.0 + 0 ENSG00000279575.1 TEC AL583859.3 2 OTTHUMG00000176129.1 +11600 chr10 HAVANA gene 10418739 10462349 1304.0 - 0 ENSG00000270111.2 lincRNA AL583859.2 2 OTTHUMG00000183907.2 +11601 chr10 HAVANA gene 10776223 10776661 439.0 - 0 ENSG00000228997.1 processed_pseudogene AL136452.1 1 OTTHUMG00000017659.1 pseudo_consens +11602 chr10 HAVANA gene 10784437 10794980 824.0 - 0 ENSG00000225383.7 lincRNA SFTA1P 2 OTTHUMG00000017660.4 +11603 chr10 HAVANA gene 10917880 10952234 4230.0 - 0 ENSG00000229240.8 processed_transcript LINC00710 2 OTTHUMG00000017661.7 +11604 chr10 HAVANA gene 10960151 10970816 537.0 + 0 ENSG00000231496.1 lincRNA AL136369.2 2 OTTHUMG00000017662.1 +11605 chr10 HAVANA gene 11010164 11011119 244.0 - 0 ENSG00000228027.1 antisense AL136369.1 2 OTTHUMG00000017663.1 +11606 chr10 HAVANA gene 11030334 11030868 433.0 - 0 ENSG00000229206.3 lincRNA AL162408.1 2 OTTHUMG00000017664.3 +11607 chr10 HAVANA gene 11071541 11105504 1416.0 - 0 ENSG00000237986.3 antisense CELF2-AS2 2 OTTHUMG00000017665.3 +11608 chr10 HAVANA gene 11168922 11171376 430.0 - 0 ENSG00000230322.1 antisense AL136320.1 1 OTTHUMG00000017666.1 +11609 chr10 HAVANA gene 11316834 11319884 2468.0 - 0 ENSG00000181800.5 antisense CELF2-AS1 2 OTTHUMG00000017669.1 +11610 chr10 HAVANA gene 10798397 11336675 10978.0 + 0 ENSG00000048740.18 protein_coding CELF2 2 OTTHUMG00000017668.8 +11611 chr10 HAVANA gene 11395808 11398792 2985.0 + 0 ENSG00000280086.1 TEC AC026887.1 2 OTTHUMG00000176132.1 +11612 chr10 HAVANA gene 11453946 11611754 14202.0 - 0 ENSG00000148429.14 protein_coding USP6NL 2 OTTHUMG00000017672.6 +11613 chr10 HAVANA gene 11611305 11612227 923.0 + 0 ENSG00000271360.1 antisense AL512631.2 2 OTTHUMG00000185156.1 +11614 chr10 HAVANA gene 11679675 11680514 840.0 + 0 ENSG00000271046.1 lincRNA AL512631.1 2 OTTHUMG00000185157.1 +11615 chr10 HAVANA gene 11742366 11764070 2185.0 + 0 ENSG00000134463.14 protein_coding ECHDC3 2 OTTHUMG00000017675.2 +11616 chr10 HAVANA gene 11823339 11872277 3663.0 + 0 ENSG00000148426.12 protein_coding PROSER2 2 OTTHUMG00000017673.5 +11617 chr10 HAVANA gene 11849608 11894700 3274.0 - 0 ENSG00000225778.5 antisense PROSER2-AS1 2 OTTHUMG00000017674.2 +11618 chr10 ENSEMBL gene 11923181 11923288 108.0 + 0 ENSG00000251957.1 snRNA RNU6-1095P 3 +11619 chr10 HAVANA gene 11920022 12043170 5906.0 - 0 ENSG00000151461.19 protein_coding UPF2 2 OTTHUMG00000017678.2 +11620 chr10 ENSEMBL gene 12116280 12116379 100.0 - 0 ENSG00000272507.1 snRNA RNU6-88P 3 +11621 chr10 HAVANA gene 12068972 12123225 5281.0 + 0 ENSG00000181192.11 protein_coding DHTKD1 2 OTTHUMG00000017677.3 +11622 chr10 ENSEMBL gene 12130760 12130816 57.0 - 0 ENSG00000265653.1 miRNA MIR548AK 3 +11623 chr10 HAVANA gene 12129637 12169961 3916.0 + 0 ENSG00000065665.20 protein_coding SEC61A2 2 OTTHUMG00000017679.7 +11624 chr10 HAVANA gene 12165325 12196144 4969.0 - 0 ENSG00000165609.12 protein_coding NUDT5 2 OTTHUMG00000017682.5 +11625 chr10 HAVANA gene 12244751 12247845 2510.0 - 0 ENSG00000228302.2 antisense AL512770.1 2 OTTHUMG00000017681.2 +11626 chr10 HAVANA gene 12195965 12250589 2404.0 + 0 ENSG00000151465.13 protein_coding CDC123 2 OTTHUMG00000017680.6 +11627 chr10 ENSEMBL gene 12328132 12328389 258.0 - 0 ENSG00000264036.2 misc_RNA RN7SL198P 3 +11628 chr10 ENSEMBL gene 12415928 12416000 73.0 + 0 ENSG00000252438.1 snoRNA RF00279 3 +11629 chr10 ENSEMBL gene 12456483 12456631 149.0 + 0 ENSG00000252118.1 snRNA RNU6ATAC39P 3 +11630 chr10 HAVANA gene 12563151 12567351 3732.0 + 0 ENSG00000285994.1 sense_intronic AL731559.1 2 OTTHUMG00000193288.1 +11631 chr10 ENSEMBL gene 12578753 12578823 71.0 + 0 ENSG00000263584.1 miRNA MIR4480 3 +11632 chr10 ENSEMBL gene 12653138 12653197 60.0 - 0 ENSG00000283699.1 miRNA MIR4481 3 +11633 chr10 ENSEMBL gene 12725254 12725353 100.0 - 0 ENSG00000221331.1 miRNA MIR548Q 3 +11634 chr10 HAVANA gene 12349482 12835545 8762.0 + 0 ENSG00000183049.12 protein_coding CAMK1D 2 OTTHUMG00000017683.3 ncRNA_host +11635 chr10 ENSEMBL gene 12924679 12924785 107.0 - 0 ENSG00000212499.1 rRNA_pseudogene RNA5SP300 3 +11636 chr10 HAVANA gene 12877459 12965275 1946.0 + 0 ENSG00000285520.1 antisense AL353586.1 2 OTTHUMG00000192808.1 +11637 chr10 HAVANA gene 13057902 13058676 775.0 - 0 ENSG00000225251.1 processed_pseudogene RPL5P25 1 OTTHUMG00000017691.1 pseudo_consens,overlapping_locus +11638 chr10 HAVANA gene 12896625 13099652 3683.0 - 0 ENSG00000151468.10 protein_coding CCDC3 2 OTTHUMG00000017689.2 overlapping_locus +11639 chr10 HAVANA gene 13104574 13104793 220.0 - 0 ENSG00000235763.1 processed_pseudogene SNRPGP5 1 OTTHUMG00000017684.1 pseudo_consens +11640 chr10 HAVANA gene 13099449 13138308 5138.0 + 0 ENSG00000123240.16 protein_coding OPTN 2 OTTHUMG00000017690.6 +11641 chr10 HAVANA gene 13139196 13139533 338.0 - 0 ENSG00000234175.1 processed_pseudogene AL355355.2 2 OTTHUMG00000017688.2 +11642 chr10 HAVANA gene 13142185 13142977 793.0 - 0 ENSG00000228330.1 processed_pseudogene AL355355.1 1 OTTHUMG00000017685.1 pseudo_consens +11643 chr10 HAVANA gene 13156684 13158136 1453.0 - 0 ENSG00000203414.2 processed_pseudogene BTBD7P1 1 OTTHUMG00000017686.1 pseudo_consens +11644 chr10 HAVANA gene 13159477 13159777 301.0 - 0 ENSG00000237540.1 processed_pseudogene RPL36AP36 1 OTTHUMG00000017687.1 pseudo_consens +11645 chr10 HAVANA gene 13161554 13211104 5454.0 + 0 ENSG00000065328.16 protein_coding MCM10 2 OTTHUMG00000017694.3 +11646 chr10 ENSEMBL gene 13217269 13217375 107.0 + 0 ENSG00000272055.1 snRNA RNU6-6P 3 +11647 chr10 HAVANA gene 13221767 13234334 829.0 - 0 ENSG00000165623.9 protein_coding UCMA 2 OTTHUMG00000017692.3 +11648 chr10 HAVANA gene 13277796 13302412 3381.0 - 0 ENSG00000107537.13 protein_coding PHYH 2 OTTHUMG00000017693.10 +11649 chr10 HAVANA gene 13308145 13308447 303.0 - 0 ENSG00000226209.1 processed_pseudogene C8orf59P1 1 OTTHUMG00000187414.1 pseudo_consens +11650 chr10 HAVANA gene 13317424 13348298 3888.0 - 0 ENSG00000086475.14 protein_coding SEPHS1 2 OTTHUMG00000017696.3 +11651 chr10 HAVANA gene 13415202 13423133 454.0 + 0 ENSG00000233256.1 antisense AL355870.1 2 OTTHUMG00000017697.1 +11652 chr10 ENSEMBL gene 13511206 13511313 108.0 - 0 ENSG00000202508.1 misc_RNA RF00019 3 +11653 chr10 HAVANA gene 13438484 13528974 9815.0 - 0 ENSG00000165626.17 protein_coding BEND7 2 OTTHUMG00000017699.4 ncRNA_host +11654 chr10 HAVANA gene 13528516 13530262 380.0 + 0 ENSG00000227175.1 antisense AL590677.1 2 OTTHUMG00000017698.1 +11655 chr10 HAVANA gene 13591460 13592323 864.0 - 0 ENSG00000227474.1 processed_pseudogene RPL6P24 1 OTTHUMG00000017700.1 pseudo_consens +11656 chr10 HAVANA gene 13586927 13630868 1865.0 + 0 ENSG00000165630.13 protein_coding PRPF18 2 OTTHUMG00000017702.2 overlapping_locus +11657 chr10 HAVANA gene 13610047 13655929 2179.0 + 0 ENSG00000282246.1 protein_coding AL157392.5 2 OTTHUMG00000017701.6 overlapping_locus +11658 chr10 HAVANA gene 13631143 13668445 15012.0 + 0 ENSG00000239665.8 processed_transcript AL157392.3 2 OTTHUMG00000191439.1 overlapping_locus +11659 chr10 HAVANA gene 13675646 13675990 345.0 + 0 ENSG00000273474.1 antisense AL157392.4 2 OTTHUMG00000186161.1 +11660 chr10 HAVANA gene 13710415 13712054 373.0 + 0 ENSG00000225112.1 antisense AL157392.1 2 OTTHUMG00000017703.1 +11661 chr10 ENSEMBL gene 13727796 13727916 121.0 + 0 ENSG00000199407.1 rRNA_pseudogene RNA5SP301 3 +11662 chr10 HAVANA gene 13729383 13756200 474.0 + 0 ENSG00000234091.1 antisense AL157392.2 2 OTTHUMG00000017704.1 +11663 chr10 HAVANA gene 13870797 13871175 379.0 + 0 ENSG00000215227.4 processed_pseudogene NUTF2P5 1 OTTHUMG00000017705.1 pseudo_consens +11664 chr10 HAVANA gene 13991815 14007526 570.0 + 0 ENSG00000229751.1 antisense AC044781.1 2 OTTHUMG00000017706.1 +11665 chr10 HAVANA gene 14074284 14087605 790.0 + 0 ENSG00000235410.1 antisense AL157896.1 2 OTTHUMG00000017707.1 +11666 chr10 HAVANA gene 14372001 14377586 2591.0 + 0 ENSG00000285671.1 lincRNA AL139405.1 2 OTTHUMG00000192683.1 +11667 chr10 ENSEMBL gene 14383200 14383277 78.0 - 0 ENSG00000266321.1 miRNA MIR4293 3 +11668 chr10 ENSEMBL gene 14391875 14392196 322.0 + 0 ENSG00000278100.1 misc_RNA RF00017 3 +11669 chr10 ENSEMBL gene 14436576 14436661 86.0 + 0 ENSG00000221371.1 miRNA MIR1265 3 +11670 chr10 HAVANA gene 13643706 14462142 13328.0 - 0 ENSG00000151474.22 protein_coding FRMD4A 1 OTTHUMG00000017708.9 ncRNA_host +11671 chr10 HAVANA gene 14652689 14661691 1248.0 + 0 ENSG00000236495.2 antisense AL158168.1 2 OTTHUMG00000017710.2 +11672 chr10 ENSEMBL gene 14663395 14663494 100.0 - 0 ENSG00000201766.1 rRNA_pseudogene RNA5SP302 3 +11673 chr10 HAVANA gene 14723171 14724055 885.0 - 0 ENSG00000237032.1 processed_pseudogene RPSAP7 1 OTTHUMG00000017711.1 pseudo_consens,overlapping_locus +11674 chr10 HAVANA gene 14518557 14774897 7019.0 - 0 ENSG00000065809.13 protein_coding FAM107B 2 OTTHUMG00000017709.4 overlapping_locus +11675 chr10 HAVANA gene 14819250 14838575 1733.0 - 0 ENSG00000185267.9 protein_coding CDNF 2 OTTHUMG00000017713.3 +11676 chr10 HAVANA gene 14838160 14847018 4924.0 + 0 ENSG00000284024.2 protein_coding HSPA14 2 OTTHUMG00000017712.5 overlapping_locus +11677 chr10 HAVANA gene 14838164 14871741 4287.0 + 0 ENSG00000187522.15 protein_coding HSPA14 2 OTTHUMG00000191882.1 overlapping_locus +11678 chr10 HAVANA gene 14877688 14878686 999.0 - 0 ENSG00000272853.1 lincRNA AC069544.1 2 OTTHUMG00000186172.1 +11679 chr10 HAVANA gene 14878820 14904315 3565.0 + 0 ENSG00000152455.15 protein_coding SUV39H2 1 OTTHUMG00000017718.4 +11680 chr10 HAVANA gene 14897359 14954432 6326.0 - 0 ENSG00000152457.17 protein_coding DCLRE1C 2 OTTHUMG00000017716.3 +11681 chr10 HAVANA gene 14986942 14987515 574.0 - 0 ENSG00000235623.2 unprocessed_pseudogene OR7E110P 2 OTTHUMG00000017715.2 +11682 chr10 HAVANA gene 14959439 14988050 1407.0 + 0 ENSG00000197889.9 protein_coding MEIG1 2 OTTHUMG00000017717.2 +11683 chr10 HAVANA gene 14999050 15000055 1006.0 - 0 ENSG00000228547.5 unprocessed_pseudogene OR7E26P 2 OTTHUMG00000017721.2 +11684 chr10 HAVANA gene 15007861 15008884 1024.0 - 0 ENSG00000182531.7 unprocessed_pseudogene OR7E115P 1 OTTHUMG00000017719.2 pseudo_consens +11685 chr10 HAVANA gene 15015370 15021863 470.0 - 0 ENSG00000237470.3 unprocessed_pseudogene DCLRE1CP1 2 OTTHUMG00000017720.1 +11686 chr10 HAVANA gene 15032227 15073852 2364.0 + 0 ENSG00000152463.14 protein_coding OLAH 2 OTTHUMG00000017724.2 +11687 chr10 HAVANA gene 15077523 15088776 1498.0 - 0 ENSG00000176244.6 protein_coding ACBD7 2 OTTHUMG00000017725.2 +11688 chr10 HAVANA gene 15093263 15093611 349.0 - 0 ENSG00000228312.1 processed_pseudogene GAPDHP45 1 OTTHUMG00000017726.1 pseudo_consens +11689 chr10 HAVANA gene 15095385 15097319 1714.0 - 0 ENSG00000176236.6 bidirectional_promoter_lncRNA C10orf111 2 OTTHUMG00000017727.1 +11690 chr10 HAVANA gene 15097180 15139818 1930.0 + 0 ENSG00000152464.14 protein_coding RPP38 2 OTTHUMG00000017728.3 +11691 chr10 HAVANA gene 15154802 15155320 519.0 - 0 ENSG00000206448.3 processed_pseudogene PPIAP30 1 OTTHUMG00000017730.1 pseudo_consens,overlapping_locus +11692 chr10 HAVANA gene 15102584 15168693 4700.0 - 0 ENSG00000152465.17 protein_coding NMT2 2 OTTHUMG00000017723.2 overlapping_locus +11693 chr10 HAVANA gene 15171036 15171278 243.0 - 0 ENSG00000228181.1 processed_pseudogene AL590365.1 1 OTTHUMG00000017722.1 pseudo_consens +11694 chr10 HAVANA gene 15237492 15241767 794.0 + 0 ENSG00000232739.1 antisense AL607028.1 1 OTTHUMG00000017731.1 +11695 chr10 HAVANA gene 15211643 15371062 3955.0 - 0 ENSG00000148468.16 protein_coding FAM171A1 2 OTTHUMG00000017732.2 +11696 chr10 HAVANA gene 15513949 15720125 7528.0 - 0 ENSG00000077943.7 protein_coding ITGA8 2 OTTHUMG00000017733.1 +11697 chr10 HAVANA gene 15778170 15860520 4094.0 - 0 ENSG00000148481.13 protein_coding MINDY3 2 OTTHUMG00000017734.3 +11698 chr10 ENSEMBL gene 16005808 16005923 116.0 + 0 ENSG00000252537.1 snoRNA RF00322 3 +11699 chr10 HAVANA gene 16071416 16071809 394.0 - 0 ENSG00000237913.1 processed_pseudogene FTLP19 2 OTTHUMG00000017735.1 +11700 chr10 ENSEMBL gene 16207821 16207927 107.0 - 0 ENSG00000201260.1 snRNA RNU6-1075P 3 +11701 chr10 HAVANA gene 16278701 16295858 605.0 + 0 ENSG00000226140.5 lincRNA AL355339.1 2 OTTHUMG00000017736.1 +11702 chr10 ENSEMBL gene 16476003 16476164 162.0 + 0 ENSG00000223156.1 snRNA RNU2-18P 3 +11703 chr10 HAVANA gene 16436943 16513745 4003.0 + 0 ENSG00000165983.14 protein_coding PTER 2 OTTHUMG00000017737.3 ncRNA_host +11704 chr10 HAVANA gene 16513743 16522005 2493.0 - 0 ENSG00000165985.9 protein_coding C1QL3 2 OTTHUMG00000017738.1 +11705 chr10 HAVANA gene 16721352 16748377 697.0 - 0 ENSG00000225213.2 sense_intronic AC073367.1 2 OTTHUMG00000017739.3 overlapping_locus +11706 chr10 ENSEMBL gene 16767235 16767416 182.0 + 0 ENSG00000275001.1 misc_RNA RF02271 3 +11707 chr10 HAVANA gene 16590611 16817528 4191.0 - 0 ENSG00000148484.17 protein_coding RSU1 2 OTTHUMG00000017740.4 overlapping_locus +11708 chr10 HAVANA gene 16823966 17129817 13270.0 - 0 ENSG00000107611.15 protein_coding CUBN 1 OTTHUMG00000017741.3 +11709 chr10 HAVANA gene 17137336 17137585 250.0 - 0 ENSG00000273153.1 lincRNA AC067747.1 2 OTTHUMG00000186173.1 +11710 chr10 HAVANA gene 17142254 17202054 10535.0 - 0 ENSG00000107614.21 protein_coding TRDMT1 1 OTTHUMG00000017745.12 +11711 chr10 HAVANA gene 17214239 17229985 1992.0 - 0 ENSG00000229124.6 antisense VIM-AS1 2 OTTHUMG00000017743.2 +11712 chr10 HAVANA gene 17233325 17234833 706.0 - 0 ENSG00000234961.1 antisense AL133415.1 2 OTTHUMG00000017742.1 +11713 chr10 HAVANA gene 17228259 17237593 5158.0 + 0 ENSG00000026025.15 protein_coding VIM 2 OTTHUMG00000017744.5 +11714 chr10 ENSEMBL gene 17403508 17403620 113.0 + 0 ENSG00000251803.1 misc_RNA RF00019 3 +11715 chr10 HAVANA gene 17386936 17413503 2022.0 + 0 ENSG00000204832.9 antisense ST8SIA6-AS1 2 OTTHUMG00000017746.2 ncRNA_host +11716 chr10 HAVANA gene 17318383 17454330 2627.0 - 0 ENSG00000148488.16 protein_coding ST8SIA6 2 OTTHUMG00000017748.3 +11717 chr10 HAVANA gene 17577362 17578212 851.0 + 0 ENSG00000236582.1 processed_pseudogene PRPF38AP2 1 OTTHUMG00000017752.1 pseudo_consens +11718 chr10 ENSEMBL gene 17602910 17603127 216.0 + 0 ENSG00000280126.2 pseudogene AC069542.2 3 +11719 chr10 HAVANA gene 17589032 17617377 3857.0 - 0 ENSG00000165996.13 protein_coding HACD1 1 OTTHUMG00000017750.4 +11720 chr10 HAVANA gene 17641284 17643878 2595.0 - 0 ENSG00000260589.1 antisense STAM-AS1 2 OTTHUMG00000176135.1 +11721 chr10 HAVANA gene 17695709 17700232 557.0 - 0 ENSG00000229190.1 antisense AC069542.1 2 OTTHUMG00000017751.1 +11722 chr10 HAVANA gene 17644125 17715914 3246.0 + 0 ENSG00000136738.14 protein_coding STAM 2 OTTHUMG00000017749.3 +11723 chr10 HAVANA gene 17752252 17800868 5464.0 + 0 ENSG00000148483.8 protein_coding TMEM236 2 OTTHUMG00000017753.1 +11724 chr10 ENSEMBL gene 17845107 17845193 87.0 + 0 ENSG00000207938.1 miRNA MIR511 3 +11725 chr10 HAVANA gene 17862887 17865471 221.0 - 0 ENSG00000235637.1 antisense AC069023.1 2 OTTHUMG00000017756.1 +11726 chr10 HAVANA gene 17809344 17911170 5198.0 + 0 ENSG00000260314.2 protein_coding MRC1 2 OTTHUMG00000174646.3 ncRNA_host +11727 chr10 HAVANA gene 18001786 18010562 2581.0 - 0 ENSG00000226083.5 antisense SLC39A12-AS1 2 OTTHUMG00000017758.1 +11728 chr10 HAVANA gene 17951839 18043292 2808.0 + 0 ENSG00000148482.11 protein_coding SLC39A12 2 OTTHUMG00000017759.1 +11729 chr10 HAVANA gene 18206127 18261194 2472.0 - 0 ENSG00000235020.4 processed_transcript AL390783.1 2 OTTHUMG00000017760.3 +11730 chr10 HAVANA gene 18531849 18533336 413.0 - 0 ENSG00000225527.1 antisense AL450384.1 1 OTTHUMG00000017761.1 overlapping_locus +11731 chr10 HAVANA gene 18140677 18543557 8955.0 + 0 ENSG00000165995.19 protein_coding CACNB2 2 OTTHUMG00000017764.6 +11732 chr10 HAVANA gene 18513115 18545651 1575.0 - 0 ENSG00000240291.1 antisense AL450384.2 2 OTTHUMG00000017762.1 overlapping_locus +11733 chr10 HAVANA gene 18545561 18659285 3498.0 - 0 ENSG00000241058.3 protein_coding NSUN6 2 OTTHUMG00000017767.3 overlapping_locus +11734 chr10 HAVANA gene 18659405 18681639 7196.0 + 0 ENSG00000165997.4 protein_coding ARL5B 2 OTTHUMG00000017765.1 +11735 chr10 HAVANA gene 18735745 18738631 1841.0 + 0 ENSG00000225509.1 processed_pseudogene AIFM1P1 1 OTTHUMG00000017768.1 pseudo_consens +11736 chr10 HAVANA gene 18746433 18747853 548.0 + 0 ENSG00000234244.1 lincRNA AL512641.1 1 OTTHUMG00000017769.1 +11737 chr10 HAVANA gene 18940501 18940953 453.0 + 0 ENSG00000234813.1 processed_pseudogene AL357520.1 1 OTTHUMG00000017770.1 pseudo_consens +11738 chr10 HAVANA gene 19051455 19052170 398.0 + 0 ENSG00000226255.1 processed_pseudogene UBE2V2P1 1 OTTHUMG00000017771.1 pseudo_consens +11739 chr10 HAVANA gene 19290223 19291480 303.0 - 0 ENSG00000227734.1 antisense AL590378.1 2 OTTHUMG00000017772.1 +11740 chr10 HAVANA gene 19489101 19489400 300.0 + 0 ENSG00000239539.1 processed_pseudogene HMGN1P20 1 OTTHUMG00000017774.1 pseudo_consens,overlapping_locus +11741 chr10 HAVANA gene 19491072 19491299 228.0 - 0 ENSG00000236960.1 processed_pseudogene AL354695.1 2 OTTHUMG00000017776.1 +11742 chr10 ENSEMBL gene 19598247 19598463 217.0 + 0 ENSG00000200545.2 snoRNA RF00012 3 +11743 chr10 ENSEMBL gene 19633683 19633812 130.0 - 0 ENSG00000252001.1 rRNA_pseudogene RNA5SP303 3 +11744 chr10 HAVANA gene 19710328 19728550 2151.0 - 0 ENSG00000233968.6 antisense AL157895.1 2 OTTHUMG00000017777.2 +11745 chr10 HAVANA gene 19747172 19747435 264.0 - 0 ENSG00000283456.1 processed_pseudogene MTND1P37 2 OTTHUMG00000191733.1 +11746 chr10 HAVANA gene 19747823 19748621 799.0 + 0 ENSG00000230818.1 processed_pseudogene MTND2P16 2 OTTHUMG00000017778.1 overlapping_locus +11747 chr10 HAVANA gene 19048771 19790401 7781.0 + 0 ENSG00000204740.10 protein_coding MALRD1 1 OTTHUMG00000017779.6 ncRNA_host,overlapping_locus +11748 chr10 ENSEMBL gene 19792998 19793101 104.0 - 0 ENSG00000252832.1 snRNA RNU6-1212P 3 +11749 chr10 HAVANA gene 19812372 19816278 2349.0 - 0 ENSG00000285852.1 bidirectional_promoter_lncRNA AL353147.1 2 OTTHUMG00000192942.2 +11750 chr10 HAVANA gene 20070805 20091784 499.0 - 0 ENSG00000238246.1 antisense AC069549.1 2 OTTHUMG00000017780.1 +11751 chr10 HAVANA gene 19816239 20289856 12567.0 + 0 ENSG00000120594.16 protein_coding PLXDC2 2 OTTHUMG00000017781.5 +11752 chr10 HAVANA gene 20350049 20351100 922.0 + 0 ENSG00000228339.1 processed_pseudogene AMD1P1 1 OTTHUMG00000017782.1 pseudo_consens +11753 chr10 HAVANA gene 20547171 20547422 252.0 + 0 ENSG00000270727.1 processed_pseudogene AL590032.1 1 OTTHUMG00000184671.1 pseudo_consens +11754 chr10 ENSEMBL gene 20551970 20552046 77.0 + 0 ENSG00000265372.1 miRNA MIR4675 3 +11755 chr10 HAVANA gene 20804293 20804577 285.0 + 0 ENSG00000235940.1 processed_pseudogene MTND1P21 2 OTTHUMG00000017784.1 +11756 chr10 HAVANA gene 20841375 20841560 186.0 + 0 ENSG00000230112.1 processed_pseudogene AL157398.1 2 OTTHUMG00000017783.1 +11757 chr10 HAVANA gene 21028999 21030792 1794.0 + 0 ENSG00000228753.1 processed_pseudogene EIF4BP2 1 OTTHUMG00000017785.1 pseudo_consens +11758 chr10 HAVANA gene 21110682 21113388 828.0 + 0 ENSG00000228219.1 processed_pseudogene NPM1P30 1 OTTHUMG00000017787.1 pseudo_consens +11759 chr10 HAVANA gene 21125763 21146559 614.0 - 0 ENSG00000204683.11 protein_coding C10orf113 1 OTTHUMG00000017786.5 overlapping_locus +11760 chr10 HAVANA gene 20779973 21174187 13654.0 - 0 ENSG00000078114.18 protein_coding NEBL 2 OTTHUMG00000017788.6 overlapping_locus +11761 chr10 HAVANA gene 21174014 21175048 681.0 + 0 ENSG00000231920.1 antisense NEBL-AS1 2 OTTHUMG00000017789.1 +11762 chr10 HAVANA gene 21217891 21218279 389.0 + 0 ENSG00000228860.1 processed_pseudogene AL731547.1 1 OTTHUMG00000017790.1 pseudo_consens +11763 chr10 HAVANA gene 21247752 21248095 344.0 + 0 ENSG00000232853.1 processed_pseudogene LUZP4P1 1 OTTHUMG00000017791.1 pseudo_consens +11764 chr10 ENSEMBL gene 21321961 21322067 107.0 + 0 ENSG00000207264.1 snRNA RNU6-15P 3 +11765 chr10 HAVANA gene 21340233 21372950 439.0 - 0 ENSG00000230109.1 lincRNA AL158209.1 1 OTTHUMG00000017792.1 +11766 chr10 HAVANA gene 21394033 21394592 560.0 + 0 ENSG00000231553.1 processed_pseudogene RNMTL1P1 1 OTTHUMG00000017793.1 pseudo_consens +11767 chr10 HAVANA gene 21452197 21452412 216.0 + 0 ENSG00000278650.1 unprocessed_pseudogene AL158209.2 2 OTTHUMG00000187770.1 +11768 chr10 ENSEMBL gene 21455236 21455515 280.0 - 0 ENSG00000273566.1 misc_RNA RF00017 3 +11769 chr10 ENSEMBL gene 21481716 21481817 102.0 + 0 ENSG00000199222.1 misc_RNA RF00019 3 +11770 chr10 ENSEMBL gene 21496562 21496641 80.0 - 0 ENSG00000222071.1 miRNA MIR1915 3 +11771 chr10 HAVANA gene 21492658 21497262 3801.0 - 0 ENSG00000204682.5 protein_coding CASC10 2 OTTHUMG00000017795.2 ncRNA_host +11772 chr10 HAVANA gene 21513478 21526368 6700.0 - 0 ENSG00000180592.16 protein_coding SKIDA1 2 OTTHUMG00000017797.4 +11773 chr10 ENSEMBL gene 21564471 21564577 107.0 - 0 ENSG00000207347.1 snRNA RNU6-306P 3 +11774 chr10 HAVANA gene 21624592 21626286 1695.0 - 0 ENSG00000223984.1 processed_pseudogene HNRNPRP1 1 OTTHUMG00000017798.1 pseudo_consens +11775 chr10 ENSEMBL gene 21661635 21661741 107.0 - 0 ENSG00000201390.1 snRNA RNU6-1141P 3 +11776 chr10 HAVANA gene 21524675 21743630 6945.0 + 0 ENSG00000078403.16 protein_coding MLLT10 2 OTTHUMG00000017799.3 +11777 chr10 ENSEMBL gene 21785292 21785587 296.0 + 0 ENSG00000252634.1 misc_RNA RN7SKP219 3 +11778 chr10 HAVANA gene 21865335 21865921 587.0 - 0 ENSG00000279623.1 sense_intronic AL359697.1 2 OTTHUMG00000189129.1 +11779 chr10 ENSEMBL gene 21933143 21933438 296.0 + 0 ENSG00000201364.1 misc_RNA RN7SKP37 3 +11780 chr10 HAVANA gene 21756537 22003769 2501.0 - 0 ENSG00000136770.10 protein_coding DNAJC1 2 OTTHUMG00000017800.5 +11781 chr10 HAVANA gene 22163092 22164306 473.0 + 0 ENSG00000236777.1 processed_pseudogene AL157831.1 1 OTTHUMG00000017803.1 pseudo_consens,overlapping_locus +11782 chr10 HAVANA gene 22162992 22165794 1074.0 + 0 ENSG00000232497.1 processed_pseudogene ADIPOR1P1 1 OTTHUMG00000017804.1 pseudo_consens,overlapping_locus +11783 chr10 HAVANA gene 22208814 22210021 1208.0 - 0 ENSG00000223601.2 protein_coding EBLN1 2 OTTHUMG00000017801.3 +11784 chr10 HAVANA gene 22218074 22221168 3095.0 + 0 ENSG00000260205.1 lincRNA AL157831.2 2 OTTHUMG00000176138.1 +11785 chr10 HAVANA gene 22225698 22226024 327.0 + 0 ENSG00000227462.1 processed_pseudogene PSME2P6 1 OTTHUMG00000017802.1 pseudo_consens +11786 chr10 HAVANA gene 22252072 22254589 2518.0 + 0 ENSG00000279631.1 TEC AL158211.5 2 OTTHUMG00000176140.1 +11787 chr10 HAVANA gene 22257786 22258548 763.0 + 0 ENSG00000261671.1 lincRNA AL158211.1 2 OTTHUMG00000176141.1 +11788 chr10 HAVANA gene 22266991 22267346 356.0 + 0 ENSG00000233318.2 processed_pseudogene RPL31P45 1 OTTHUMG00000017805.2 pseudo_consens +11789 chr10 HAVANA gene 22315974 22320308 3317.0 + 0 ENSG00000148444.15 protein_coding COMMD3 2 OTTHUMG00000017806.3 overlapping_locus +11790 chr10 HAVANA gene 22316388 22329542 1904.0 + 0 ENSG00000269897.5 protein_coding COMMD3-BMI1 2 OTTHUMG00000184031.2 overlapping_locus +11791 chr10 HAVANA gene 22321211 22331484 4283.0 + 0 ENSG00000168283.13 protein_coding BMI1 2 OTTHUMG00000017807.3 overlapping_locus +11792 chr10 HAVANA gene 22332587 22332981 395.0 - 0 ENSG00000271981.1 lincRNA AL158211.2 2 OTTHUMG00000185318.1 +11793 chr10 HAVANA gene 22332404 22332987 584.0 + 0 ENSG00000272516.1 lincRNA AL158211.4 2 OTTHUMG00000185317.1 +11794 chr10 HAVANA gene 22340377 22340615 239.0 - 0 ENSG00000272366.1 lincRNA AL158211.3 2 OTTHUMG00000185319.1 +11795 chr10 HAVANA gene 22361172 22413067 469.0 + 0 ENSG00000233451.1 sense_overlapping AL513128.1 2 OTTHUMG00000017809.1 overlapping_locus +11796 chr10 HAVANA gene 22345445 22454224 3887.0 + 0 ENSG00000077327.15 protein_coding SPAG6 2 OTTHUMG00000017808.3 overlapping_locus +11797 chr10 HAVANA gene 22475455 22478026 2572.0 - 0 ENSG00000285254.1 lincRNA AL513128.2 2 OTTHUMG00000192545.1 +11798 chr10 HAVANA gene 22693953 22694639 687.0 - 0 ENSG00000279819.1 TEC AL390318.1 2 OTTHUMG00000184235.1 overlapping_locus +11799 chr10 HAVANA gene 22534849 22714555 5088.0 - 0 ENSG00000150867.13 protein_coding PIP4K2A 2 OTTHUMG00000017810.4 overlapping_locus +11800 chr10 ENSEMBL gene 22787393 22787499 107.0 + 0 ENSG00000206842.1 snRNA RNU6-413P 3 +11801 chr10 ENSEMBL gene 22997255 22997358 104.0 + 0 ENSG00000223131.1 rRNA_pseudogene RNA5SP304 3 +11802 chr10 HAVANA gene 22928024 23038523 6999.0 + 0 ENSG00000165309.13 protein_coding ARMC3 2 OTTHUMG00000017811.4 +11803 chr10 HAVANA gene 23095506 23122013 2052.0 + 0 ENSG00000148450.12 protein_coding MSRB2 2 OTTHUMG00000017812.3 +11804 chr10 HAVANA gene 23136924 23137661 738.0 + 0 ENSG00000229932.3 processed_pseudogene YWHAZP3 2 OTTHUMG00000017813.2 +11805 chr10 ENSEMBL gene 23166985 23167101 117.0 + 0 ENSG00000252049.1 snoRNA RF00561 3 +11806 chr10 HAVANA gene 23192327 23194252 1629.0 + 0 ENSG00000168267.6 protein_coding PTF1A 2 OTTHUMG00000017815.2 +11807 chr10 HAVANA gene 23258211 23258545 335.0 + 0 ENSG00000227537.1 processed_pseudogene AL139281.1 1 OTTHUMG00000017816.1 pseudo_consens +11808 chr10 HAVANA gene 23201916 23344845 6227.0 - 0 ENSG00000179133.13 protein_coding C10orf67 2 OTTHUMG00000017818.5 +11809 chr10 HAVANA gene 23343957 23345181 892.0 + 0 ENSG00000224215.1 antisense AL606469.1 1 OTTHUMG00000017817.1 +11810 chr10 ENSEMBL gene 23393405 23393467 63.0 + 0 ENSG00000264574.1 miRNA MIR1254-2 3 +11811 chr10 HAVANA gene 23439458 23442390 2933.0 + 0 ENSG00000165312.6 protein_coding OTUD1 2 OTTHUMG00000017819.1 +11812 chr10 HAVANA gene 24157835 24158781 947.0 + 0 ENSG00000223928.1 processed_pseudogene NUP35P1 1 OTTHUMG00000017820.1 pseudo_consens,overlapping_locus +11813 chr10 ENSEMBL gene 24255246 24255333 88.0 + 0 ENSG00000277563.1 misc_RNA AC063961.1 3 +11814 chr10 ENSEMBL gene 24275685 24275781 97.0 + 0 ENSG00000207930.1 miRNA MIR603 3 +11815 chr10 HAVANA gene 24481180 24483034 1855.0 - 0 ENSG00000279029.1 TEC AL353583.1 2 OTTHUMG00000187415.1 +11816 chr10 HAVANA gene 23694746 24547848 10807.0 + 0 ENSG00000120549.17 protein_coding KIAA1217 1 OTTHUMG00000017824.7 ncRNA_host,overlapping_locus +11817 chr10 ENSEMBL gene 24640166 24640284 119.0 + 0 ENSG00000199535.1 rRNA_pseudogene RNA5SP305 3 +11818 chr10 HAVANA gene 24583609 24723668 10937.0 - 0 ENSG00000107863.17 protein_coding ARHGAP21 1 OTTHUMG00000017825.7 +11819 chr10 HAVANA gene 24816331 24822950 2057.0 + 0 ENSG00000285750.1 lincRNA AL157385.2 2 OTTHUMG00000192993.1 +11820 chr10 HAVANA gene 24867645 24868190 268.0 + 0 ENSG00000228667.1 processed_pseudogene AL157385.1 2 OTTHUMG00000017826.1 +11821 chr10 ENSEMBL gene 24908522 24908812 291.0 - 0 ENSG00000240294.2 misc_RNA RN7SKP241 3 +11822 chr10 HAVANA gene 24848607 24952604 2329.0 - 0 ENSG00000099256.18 protein_coding PRTFDC1 2 OTTHUMG00000017829.2 ncRNA_host +11823 chr10 HAVANA gene 24953241 24953513 273.0 + 0 ENSG00000273107.1 lincRNA AL512598.1 2 OTTHUMG00000186186.1 +11824 chr10 HAVANA gene 25016658 25026664 3788.0 + 0 ENSG00000185875.12 protein_coding THNSL1 2 OTTHUMG00000017828.2 overlapping_locus +11825 chr10 HAVANA gene 24981979 25062279 4076.0 - 0 ENSG00000151023.16 protein_coding ENKUR 2 OTTHUMG00000017827.7 +11826 chr10 HAVANA gene 24952350 25161236 2052.0 + 0 ENSG00000285859.1 processed_transcript AL512598.2 2 OTTHUMG00000193335.1 overlapping_locus +11827 chr10 HAVANA gene 25113058 25161236 2992.0 + 0 ENSG00000231422.2 lincRNA LINC01516 2 OTTHUMG00000017831.3 overlapping_locus +11828 chr10 HAVANA gene 25158072 25176276 2433.0 - 0 ENSG00000233642.1 antisense GPR158-AS1 2 OTTHUMG00000017830.1 +11829 chr10 HAVANA gene 25244061 25244854 387.0 - 0 ENSG00000274242.1 unprocessed_pseudogene AL354976.1 2 OTTHUMG00000187772.1 +11830 chr10 ENSEMBL gene 25393557 25393844 288.0 - 0 ENSG00000222543.1 misc_RNA RN7SKP220 3 +11831 chr10 HAVANA gene 25174802 25602226 7986.0 + 0 ENSG00000151025.10 protein_coding GPR158 2 OTTHUMG00000017832.5 +11832 chr10 HAVANA gene 25647570 25648104 535.0 - 0 ENSG00000227465.1 processed_pseudogene GPN3P1 1 OTTHUMG00000017834.1 pseudo_consens +11833 chr10 HAVANA gene 25691537 25692323 787.0 + 0 ENSG00000271563.1 processed_pseudogene HIRAP1 1 OTTHUMG00000184668.1 pseudo_consens +11834 chr10 HAVANA gene 25651712 25732935 3108.0 + 0 ENSG00000280809.3 lincRNA LINC00836 2 OTTHUMG00000189579.2 +11835 chr10 ENSEMBL gene 25813811 25813917 107.0 - 0 ENSG00000223019.1 rRNA_pseudogene RNA5SP306 3 +11836 chr10 ENSEMBL gene 25819363 25819426 64.0 - 0 ENSG00000251711.1 snRNA RNU6-632P 3 +11837 chr10 HAVANA gene 25924448 25933710 481.0 - 0 ENSG00000226304.1 antisense AL358612.1 2 OTTHUMG00000017835.1 +11838 chr10 HAVANA gene 25934071 26212536 8599.0 + 0 ENSG00000095777.15 protein_coding MYO3A 2 OTTHUMG00000017837.4 +11839 chr10 HAVANA gene 26216307 26304558 6144.0 + 0 ENSG00000136750.12 protein_coding GAD2 2 OTTHUMG00000017836.4 +11840 chr10 HAVANA gene 26379034 26387374 2074.0 - 0 ENSG00000284951.1 unitary_pseudogene AL355798.1 2 OTTHUMG00000192473.1 +11841 chr10 ENSEMBL gene 26509589 26509704 116.0 + 0 ENSG00000199733.1 rRNA_pseudogene RNA5SP307 3 +11842 chr10 HAVANA gene 26438203 26567803 3981.0 + 0 ENSG00000077420.15 protein_coding APBB1IP 2 OTTHUMG00000017841.4 +11843 chr10 HAVANA gene 26589865 26594330 1091.0 + 0 ENSG00000233261.3 transcribed_unprocessed_pseudogene FAM238A 2 OTTHUMG00000017839.3 +11844 chr10 HAVANA gene 26577676 26622338 1651.0 - 0 ENSG00000236894.3 transcribed_unprocessed_pseudogene AL160287.1 2 OTTHUMG00000017840.2 +11845 chr10 HAVANA gene 26643228 26645016 472.0 + 0 ENSG00000234296.1 lincRNA AL390961.1 2 OTTHUMG00000017847.1 +11846 chr10 HAVANA gene 26647986 26653454 1287.0 + 0 ENSG00000231976.8 transcribed_unprocessed_pseudogene FAM238B 2 OTTHUMG00000017842.2 +11847 chr10 HAVANA gene 26664206 26697295 1390.0 - 0 ENSG00000227932.2 transcribed_unitary_pseudogene SELENOOLP 2 OTTHUMG00000017843.2 +11848 chr10 HAVANA gene 26695091 26697625 2535.0 - 0 ENSG00000279212.1 TEC AL390961.3 2 OTTHUMG00000176144.1 +11849 chr10 HAVANA gene 26714622 26715832 780.0 + 0 ENSG00000234788.1 processed_pseudogene HSPA8P3 1 OTTHUMG00000017846.1 pseudo_consens,overlapping_locus +11850 chr10 HAVANA gene 26717635 26718778 485.0 + 0 ENSG00000235843.1 antisense AL390961.2 2 OTTHUMG00000017845.1 overlapping_locus +11851 chr10 HAVANA gene 26697659 26746798 1955.0 + 0 ENSG00000148459.15 protein_coding PDSS1 2 OTTHUMG00000017844.3 overlapping_locus +11852 chr10 ENSEMBL gene 26789017 26789157 141.0 + 0 ENSG00000223027.1 snoRNA RF00191 3 +11853 chr10 ENSEMBL gene 26790540 26790646 107.0 - 0 ENSG00000206605.1 snRNA RNU6-946P 3 +11854 chr10 HAVANA gene 26746593 26861087 4218.0 - 0 ENSG00000136754.17 protein_coding ABI1 2 OTTHUMG00000017848.3 ncRNA_host +11855 chr10 HAVANA gene 26931206 26944418 5545.0 - 0 ENSG00000283709.1 transcribed_unprocessed_pseudogene FAM238C 2 OTTHUMG00000017849.2 +11856 chr10 ENSEMBL gene 27088321 27088427 107.0 - 0 ENSG00000199855.1 snRNA RNU6-490P 3 +11857 chr10 HAVANA gene 26991914 27100498 7941.0 - 0 ENSG00000107890.16 protein_coding ANKRD26 1 OTTHUMG00000017851.1 ncRNA_host +11858 chr10 HAVANA gene 27110112 27155266 7335.0 - 0 ENSG00000136758.18 protein_coding YME1L1 1 OTTHUMG00000017853.3 +11859 chr10 HAVANA gene 27154824 27186924 3631.0 + 0 ENSG00000120539.14 protein_coding MASTL 2 OTTHUMG00000017855.3 +11860 chr10 ENSEMBL gene 27193358 27193500 143.0 - 0 ENSG00000252639.1 snRNA RNU2-24P 3 +11861 chr10 ENSEMBL gene 27232255 27232316 62.0 - 0 ENSG00000251839.1 snRNA RNU7-12P 3 +11862 chr10 HAVANA gene 27195214 27242130 4371.0 - 0 ENSG00000107897.18 protein_coding ACBD5 2 OTTHUMG00000017854.5 ncRNA_host +11863 chr10 HAVANA gene 27243130 27250804 1002.0 + 0 ENSG00000262412.1 lincRNA AL160291.1 2 OTTHUMG00000177437.1 +11864 chr10 HAVANA gene 27246350 27259455 5625.0 - 0 ENSG00000230445.4 transcribed_processed_pseudogene LRRC37A6P 1 OTTHUMG00000017852.2 pseudo_consens +11865 chr10 HAVANA gene 27258762 27288824 853.0 + 0 ENSG00000238021.6 transcribed_unprocessed_pseudogene ARMC4P1 2 OTTHUMG00000017856.2 +11866 chr10 ENSEMBL gene 27315120 27315226 107.0 + 0 ENSG00000200369.1 snRNA RNU6-666P 3 +11867 chr10 HAVANA gene 27313723 27316587 292.0 + 0 ENSG00000278830.1 unprocessed_pseudogene AL355493.4 2 OTTHUMG00000187774.1 +11868 chr10 ENSEMBL gene 27335501 27335607 107.0 - 0 ENSG00000207135.1 snRNA RNU6-452P 3 +11869 chr10 HAVANA gene 27331357 27341252 808.0 - 0 ENSG00000215409.4 unprocessed_pseudogene AL355493.1 2 OTTHUMG00000017857.1 +11870 chr10 HAVANA gene 27343436 27344917 1395.0 + 0 ENSG00000260151.1 lincRNA AL355493.2 2 OTTHUMG00000176148.1 +11871 chr10 HAVANA gene 27349717 27350290 574.0 - 0 ENSG00000213770.3 processed_pseudogene FAM210CP 1 OTTHUMG00000017858.1 pseudo_consens +11872 chr10 HAVANA gene 27378138 27378362 225.0 - 0 ENSG00000237956.1 processed_pseudogene TRIAP1P1 1 OTTHUMG00000017859.1 pseudo_consens +11873 chr10 HAVANA gene 27397121 27414368 3595.0 - 0 ENSG00000182077.11 polymorphic_pseudogene PTCHD3 2 OTTHUMG00000017860.4 +11874 chr10 HAVANA gene 27504174 27542237 6223.0 + 0 ENSG00000099246.16 protein_coding RAB18 2 OTTHUMG00000017861.5 +11875 chr10 HAVANA gene 27564430 27594588 3626.0 + 0 ENSG00000285737.1 lincRNA AL138920.1 2 OTTHUMG00000193292.2 +11876 chr10 HAVANA gene 27672875 27746060 4106.0 - 0 ENSG00000150051.13 protein_coding MKX 2 OTTHUMG00000017862.4 +11877 chr10 HAVANA gene 27744786 27767794 909.0 + 0 ENSG00000230500.1 antisense MKX-AS1 1 OTTHUMG00000017863.1 +11878 chr10 ENSEMBL gene 27783846 27784053 208.0 - 0 ENSG00000251810.1 misc_RNA RN7SKP132 3 +11879 chr10 HAVANA gene 27904209 27905162 305.0 + 0 ENSG00000226016.1 processed_pseudogene RPL36AP55 1 OTTHUMG00000017864.1 pseudo_consens +11880 chr10 HAVANA gene 27812164 27999048 4773.0 - 0 ENSG00000169126.15 protein_coding ARMC4 2 OTTHUMG00000017867.4 +11881 chr10 HAVANA gene 28004702 28004932 231.0 + 0 ENSG00000226395.1 processed_pseudogene MRPS21P5 2 OTTHUMG00000017865.1 overlapping_locus +11882 chr10 HAVANA gene 27999788 28049615 469.0 + 0 ENSG00000233472.1 lincRNA AL390866.1 2 OTTHUMG00000017866.2 overlapping_locus +11883 chr10 ENSEMBL gene 28289258 28289350 93.0 - 0 ENSG00000275036.1 miRNA MIR8086 3 +11884 chr10 HAVANA gene 28303300 28307658 843.0 + 0 ENSG00000282996.1 lincRNA AC022021.1 2 OTTHUMG00000191602.1 +11885 chr10 HAVANA gene 28050993 28334486 6167.0 - 0 ENSG00000150054.18 protein_coding MPP7 2 OTTHUMG00000017868.4 ncRNA_host +11886 chr10 HAVANA gene 28338554 28340942 1720.0 - 0 ENSG00000237746.1 processed_pseudogene ZNF101P1 2 OTTHUMG00000017869.1 +11887 chr10 ENSEMBL gene 28408039 28408251 213.0 - 0 ENSG00000222666.2 snoRNA RF00012 3 +11888 chr10 HAVANA gene 28436201 28437078 878.0 + 0 ENSG00000224439.2 processed_pseudogene RPSAP10 1 OTTHUMG00000017870.1 pseudo_consens +11889 chr10 ENSEMBL gene 28442575 28442896 322.0 - 0 ENSG00000222705.1 misc_RNA RN7SKP39 3 +11890 chr10 HAVANA gene 28433008 28495813 273.0 - 0 ENSG00000237128.1 lincRNA AL358234.1 2 OTTHUMG00000017871.1 ncRNA_host +11891 chr10 HAVANA gene 28522652 28532743 2943.0 - 0 ENSG00000254635.5 antisense WAC-AS1 1 OTTHUMG00000166235.1 +11892 chr10 HAVANA gene 28532493 28623112 12188.0 + 0 ENSG00000095787.21 protein_coding WAC 1 OTTHUMG00000017872.9 +11893 chr10 ENSEMBL gene 28652630 28652755 126.0 + 0 ENSG00000252401.1 snRNA RNU4ATAC6P 3 +11894 chr10 HAVANA gene 28658987 28659467 481.0 + 0 ENSG00000231911.1 processed_pseudogene TPRKBP1 1 OTTHUMG00000017873.1 pseudo_consens +11895 chr10 ENSEMBL gene 28667919 28668025 107.0 + 0 ENSG00000207483.1 snRNA RNU6-1067P 3 +11896 chr10 HAVANA gene 28677342 28682939 2314.0 + 0 ENSG00000095739.10 protein_coding BAMBI 2 OTTHUMG00000017874.2 +11897 chr10 HAVANA gene 28743745 28744663 517.0 + 0 ENSG00000236716.1 lincRNA AL355376.1 1 OTTHUMG00000017875.1 +11898 chr10 ENSEMBL gene 28760699 28760803 105.0 - 0 ENSG00000201001.1 snRNA RNU6-270P 3 +11899 chr10 HAVANA gene 28789188 28796113 4860.0 - 0 ENSG00000235824.4 lincRNA LINC00837 1 OTTHUMG00000017876.4 +11900 chr10 HAVANA gene 28812899 28813139 241.0 + 0 ENSG00000271220.2 transcribed_processed_pseudogene AL355376.2 1 OTTHUMG00000184667.1 pseudo_consens,overlapping_locus +11901 chr10 ENSEMBL gene 28874393 28874507 115.0 - 0 ENSG00000199402.1 rRNA_pseudogene RNA5SP308 3 +11902 chr10 HAVANA gene 28898996 28899484 489.0 - 0 ENSG00000229605.5 processed_pseudogene RPL21P93 2 OTTHUMG00000017879.1 +11903 chr10 HAVANA gene 28743506 28941910 7216.0 + 0 ENSG00000232624.7 processed_transcript LINC01517 1 OTTHUMG00000017878.3 overlapping_locus +11904 chr10 HAVANA gene 29289061 29318328 1132.0 + 0 ENSG00000120563.9 protein_coding LYZL1 2 OTTHUMG00000017880.4 +11905 chr10 HAVANA gene 29421476 29422012 537.0 - 0 ENSG00000274985.1 unprocessed_pseudogene PTCHD3P1 2 OTTHUMG00000187781.1 +11906 chr10 HAVANA gene 29409402 29487745 4995.0 + 0 ENSG00000224597.10 transcribed_unprocessed_pseudogene SVIL-AS1 2 OTTHUMG00000017881.6 +11907 chr10 ENSEMBL gene 29545004 29545097 94.0 - 0 ENSG00000207612.1 miRNA MIR604 3 +11908 chr10 ENSEMBL gene 29575306 29575381 76.0 + 0 ENSG00000212411.1 snoRNA RF00105 3 +11909 chr10 ENSEMBL gene 29602264 29602346 83.0 - 0 ENSG00000216035.1 miRNA MIR938 3 +11910 chr10 HAVANA gene 29697935 29698174 240.0 + 0 ENSG00000225976.5 processed_pseudogene CKS1BP2 2 OTTHUMG00000017883.1 +11911 chr10 ENSEMBL gene 29711915 29712008 94.0 + 0 ENSG00000222092.1 snRNA RNU6-908P 3 +11912 chr10 HAVANA gene 29457338 29736781 9937.0 - 0 ENSG00000197321.14 protein_coding SVIL 2 OTTHUMG00000017882.4 ncRNA_host +11913 chr10 HAVANA gene 29891032 29891467 436.0 - 0 ENSG00000237936.1 processed_pseudogene AL353093.1 1 OTTHUMG00000017884.1 pseudo_consens +11914 chr10 HAVANA gene 30012800 30115494 9515.0 - 0 ENSG00000165757.8 protein_coding JCAD 2 OTTHUMG00000017885.1 +11915 chr10 ENSEMBL gene 30299569 30299673 105.0 - 0 ENSG00000200887.1 snRNA RNU6-598P 3 +11916 chr10 HAVANA gene 30301823 30302072 250.0 - 0 ENSG00000230125.1 processed_pseudogene EEF1A1P39 1 OTTHUMG00000017887.1 pseudo_consens +11917 chr10 HAVANA gene 30302826 30306066 3241.0 - 0 ENSG00000259994.1 sense_overlapping AL353796.1 2 OTTHUMG00000176157.1 +11918 chr10 HAVANA gene 30309803 30312026 1120.0 + 0 ENSG00000285824.1 antisense AL353796.2 2 OTTHUMG00000193148.2 +11919 chr10 HAVANA gene 30353706 30357365 426.0 + 0 ENSG00000250833.1 unprocessed_pseudogene DNM1P17 1 OTTHUMG00000017888.1 pseudo_consens +11920 chr10 ENSEMBL gene 30366064 30366299 236.0 - 0 ENSG00000239625.3 misc_RNA RN7SL241P 3 +11921 chr10 ENSEMBL gene 30368597 30368665 69.0 - 0 ENSG00000284277.1 miRNA MIR7162 3 +11922 chr10 HAVANA gene 30364410 30374386 2049.0 - 0 ENSG00000241621.1 unprocessed_pseudogene GOLGA2P6 1 OTTHUMG00000017890.1 pseudo_consens,overlapping_locus +11923 chr10 HAVANA gene 30309801 30374448 8382.0 - 0 ENSG00000107951.14 protein_coding MTPAP 2 OTTHUMG00000017895.3 ncRNA_host,overlapping_locus +11924 chr10 HAVANA gene 30380174 30381062 889.0 + 0 ENSG00000214434.2 processed_pseudogene NIFKP1 1 OTTHUMG00000017891.1 pseudo_consens +11925 chr10 HAVANA gene 30383400 30383622 223.0 + 0 ENSG00000235679.1 processed_pseudogene AL161651.1 2 OTTHUMG00000017894.1 +11926 chr10 HAVANA gene 30403197 30403776 580.0 - 0 ENSG00000224473.1 processed_pseudogene CCND3P1 1 OTTHUMG00000017892.1 pseudo_consens +11927 chr10 HAVANA gene 30433937 30461833 3601.0 + 0 ENSG00000107968.9 protein_coding MAP3K8 2 OTTHUMG00000017889.5 +11928 chr10 HAVANA gene 30517616 30518861 963.0 - 0 ENSG00000213778.2 processed_pseudogene HNRNPA1P32 1 OTTHUMG00000017893.1 pseudo_consens +11929 chr10 HAVANA gene 30553854 30554483 541.0 - 0 ENSG00000228800.1 lincRNA AL590068.1 2 OTTHUMG00000017896.1 +11930 chr10 ENSEMBL gene 30555601 30555904 304.0 - 0 ENSG00000239744.3 misc_RNA RN7SL63P 3 +11931 chr10 HAVANA gene 30576699 30580182 378.0 + 0 ENSG00000230298.1 lincRNA AL590068.2 1 OTTHUMG00000017897.1 +11932 chr10 HAVANA gene 30587706 30591092 1817.0 + 0 ENSG00000285630.1 lincRNA AL590068.3 2 OTTHUMG00000192904.1 +11933 chr10 HAVANA gene 30611779 30629762 818.0 - 0 ENSG00000151033.9 protein_coding LYZL2 2 OTTHUMG00000017898.3 +11934 chr10 HAVANA gene 30655489 30717266 3232.0 + 0 ENSG00000234814.8 transcribed_unprocessed_pseudogene SVIL2P 2 OTTHUMG00000017900.3 +11935 chr10 HAVANA gene 30723251 30723740 408.0 + 0 ENSG00000230720.1 lincRNA AL451107.1 2 OTTHUMG00000017902.1 +11936 chr10 HAVANA gene 30831828 30833387 1560.0 - 0 ENSG00000272914.1 sense_intronic AL359532.1 2 OTTHUMG00000186197.1 overlapping_locus +11937 chr10 HAVANA gene 30919012 30921235 1933.0 - 0 ENSG00000237135.1 processed_pseudogene DDX10P1 1 OTTHUMG00000017903.1 pseudo_consens,overlapping_locus +11938 chr10 HAVANA gene 30820207 31031937 4267.0 - 0 ENSG00000183621.15 protein_coding ZNF438 2 OTTHUMG00000017904.4 overlapping_locus +11939 chr10 ENSEMBL gene 31259599 31259704 106.0 + 0 ENSG00000252479.1 rRNA_pseudogene RNA5SP309 3 +11940 chr10 HAVANA gene 31187883 31261910 2246.0 + 0 ENSG00000272381.1 lincRNA AL356258.1 2 OTTHUMG00000185608.1 +11941 chr10 HAVANA gene 31206278 31320447 3831.0 - 0 ENSG00000237036.4 antisense ZEB1-AS1 2 OTTHUMG00000017905.3 +11942 chr10 HAVANA gene 31360955 31361215 261.0 + 0 ENSG00000230397.1 transcribed_processed_pseudogene SPTLC1P1 1 OTTHUMG00000017906.1 pseudo_consens,overlapping_locus +11943 chr10 HAVANA gene 31362799 31364049 1251.0 - 0 ENSG00000285781.1 unprocessed_pseudogene AL117340.1 2 OTTHUMG00000193394.1 +11944 chr10 HAVANA gene 31318495 31529814 8650.0 + 0 ENSG00000148516.21 protein_coding ZEB1 1 OTTHUMG00000017907.5 overlapping_locus +11945 chr10 HAVANA gene 31602862 31606218 1038.0 + 0 ENSG00000223834.3 lincRNA AL161935.1 1 OTTHUMG00000017909.3 +11946 chr10 HAVANA gene 31628540 31628599 60.0 - 0 ENSG00000231855.1 unprocessed_pseudogene AL161935.2 2 OTTHUMG00000017908.1 +11947 chr10 HAVANA gene 31693084 31707388 347.0 - 0 ENSG00000237797.1 lincRNA AL161935.3 1 OTTHUMG00000017910.1 +11948 chr10 ENSEMBL gene 31756042 31756136 95.0 - 0 ENSG00000222412.1 misc_RNA RF00019 3 +11949 chr10 HAVANA gene 31913143 31913754 612.0 + 0 ENSG00000231148.1 processed_pseudogene HMGB1P7 1 OTTHUMG00000017912.1 pseudo_consens +11950 chr10 HAVANA gene 31805404 31928876 5938.0 - 0 ENSG00000165322.17 protein_coding ARHGAP12 2 OTTHUMG00000017911.2 +11951 chr10 HAVANA gene 31983885 31984554 342.0 + 0 ENSG00000230240.1 processed_pseudogene RPL34P19 1 OTTHUMG00000017914.1 pseudo_consens +11952 chr10 ENSEMBL gene 31992087 31992381 295.0 - 0 ENSG00000239731.3 misc_RNA RN7SL825P 3 +11953 chr10 HAVANA gene 32009010 32056431 5877.0 - 0 ENSG00000170759.10 protein_coding KIF5B 2 OTTHUMG00000017913.1 +11954 chr10 ENSEMBL gene 32056746 32056839 94.0 + 0 ENSG00000206660.1 misc_RNA RF00019 3 +11955 chr10 HAVANA gene 32102522 32103293 772.0 - 0 ENSG00000234335.1 processed_pseudogene RPS4XP11 1 OTTHUMG00000017915.1 pseudo_consens +11956 chr10 HAVANA gene 32109861 32111666 679.0 + 0 ENSG00000235113.1 processed_pseudogene AL161932.2 2 OTTHUMG00000017916.1 +11957 chr10 HAVANA gene 32111644 32111789 146.0 - 0 ENSG00000234811.1 processed_pseudogene AL161932.1 2 OTTHUMG00000017917.1 +11958 chr10 ENSEMBL gene 32173684 32173744 61.0 + 0 ENSG00000252482.1 snRNA RNU7-22P 3 +11959 chr10 HAVANA gene 32188323 32188817 495.0 - 0 ENSG00000217094.2 processed_pseudogene PPIAP31 1 OTTHUMG00000017919.1 pseudo_consens +11960 chr10 HAVANA gene 32231849 32232245 397.0 - 0 ENSG00000233190.1 processed_pseudogene RPS24P13 1 OTTHUMG00000017920.1 pseudo_consens +11961 chr10 HAVANA gene 32266289 32269474 1109.0 + 0 ENSG00000227253.3 antisense AL158834.2 2 OTTHUMG00000017921.3 +11962 chr10 HAVANA gene 32281686 32282829 466.0 + 0 ENSG00000226842.1 antisense AL158834.1 2 OTTHUMG00000017922.1 +11963 chr10 HAVANA gene 32346499 32347179 383.0 + 0 ENSG00000233825.1 antisense AL391839.2 2 OTTHUMG00000017924.1 +11964 chr10 HAVANA gene 32347397 32374488 265.0 + 0 ENSG00000229327.1 antisense AL391839.1 2 OTTHUMG00000017923.1 +11965 chr10 HAVANA gene 32267751 32378798 11286.0 - 0 ENSG00000120616.15 protein_coding EPC1 2 OTTHUMG00000017925.3 +11966 chr10 ENSEMBL gene 32394558 32394665 108.0 - 0 ENSG00000200484.1 snRNA RNU6-1244P 3 +11967 chr10 HAVANA gene 32511336 32511737 402.0 - 0 ENSG00000231245.2 processed_pseudogene C1DP1 2 OTTHUMG00000017927.1 +11968 chr10 HAVANA gene 32446140 32882874 9573.0 + 0 ENSG00000216937.13 protein_coding CCDC7 2 OTTHUMG00000150517.6 +11969 chr10 HAVANA gene 32887255 32889311 2057.0 - 0 ENSG00000273038.2 lincRNA AL365203.2 2 OTTHUMG00000186205.2 +11970 chr10 HAVANA gene 32944481 32944999 519.0 + 0 ENSG00000228816.1 processed_pseudogene AK3P5 1 OTTHUMG00000017931.1 pseudo_consens +11971 chr10 HAVANA gene 32900319 33005792 6011.0 - 0 ENSG00000150093.18 protein_coding ITGB1 1 OTTHUMG00000017928.10 +11972 chr10 HAVANA gene 33023368 33023647 280.0 - 0 ENSG00000234163.1 processed_pseudogene MTND4LP11 2 OTTHUMG00000017932.1 +11973 chr10 ENSEMBL gene 33034655 33034924 270.0 - 0 ENSG00000265319.2 misc_RNA RN7SL847P 3 +11974 chr10 HAVANA gene 33035469 33035664 196.0 - 0 ENSG00000229878.1 processed_pseudogene AL365203.1 2 OTTHUMG00000017933.1 +11975 chr10 HAVANA gene 33057615 33058407 793.0 - 0 ENSG00000235962.5 processed_pseudogene RPL7AP53 1 OTTHUMG00000017935.1 pseudo_consens +11976 chr10 HAVANA gene 32958845 33082102 1193.0 + 0 ENSG00000229656.6 lincRNA ITGB1-DT 2 OTTHUMG00000017934.1 +11977 chr10 HAVANA gene 33096257 33116672 552.0 - 0 ENSG00000233387.1 lincRNA AL121748.1 1 OTTHUMG00000017937.1 +11978 chr10 HAVANA gene 33211277 33213804 781.0 + 0 ENSG00000238258.1 antisense AL121748.2 1 OTTHUMG00000017936.1 +11979 chr10 ENSEMBL gene 33288304 33288601 298.0 - 0 ENSG00000244356.3 misc_RNA RN7SL398P 3 +11980 chr10 HAVANA gene 33177492 33336262 11522.0 - 0 ENSG00000099250.17 protein_coding NRP1 2 OTTHUMG00000019343.6 ncRNA_host +11981 chr10 HAVANA gene 33341655 33341905 251.0 + 0 ENSG00000273012.1 lincRNA AL353600.1 2 OTTHUMG00000186206.1 +11982 chr10 HAVANA gene 33578931 33600040 862.0 - 0 ENSG00000226412.1 lincRNA AC018980.1 2 OTTHUMG00000017939.1 +11983 chr10 HAVANA gene 33684755 33687064 452.0 + 0 ENSG00000203565.2 lincRNA AL450313.1 2 OTTHUMG00000017940.1 +11984 chr10 HAVANA gene 33759713 33772658 2936.0 - 0 ENSG00000261683.1 lincRNA LINC00838 2 OTTHUMG00000176162.1 +11985 chr10 HAVANA gene 33864313 33864723 411.0 + 0 ENSG00000226407.1 processed_pseudogene RPL23P11 1 OTTHUMG00000017941.1 pseudo_consens +11986 chr10 HAVANA gene 33909238 33917804 631.0 + 0 ENSG00000223470.3 lincRNA AL117338.1 1 OTTHUMG00000017942.3 +11987 chr10 ENSEMBL gene 34201979 34202074 96.0 - 0 ENSG00000199200.2 misc_RNA RF00019 3 +11988 chr10 HAVANA gene 34488583 34488878 296.0 - 0 ENSG00000234167.1 processed_pseudogene ELOBP4 1 OTTHUMG00000017943.1 pseudo_consens,overlapping_locus +11989 chr10 HAVANA gene 34663859 34664101 243.0 - 0 ENSG00000229235.1 processed_pseudogene RPL37P18 1 OTTHUMG00000017945.1 pseudo_consens,overlapping_locus +11990 chr10 HAVANA gene 34675635 34676041 407.0 - 0 ENSG00000215184.2 processed_pseudogene RPS12P16 1 OTTHUMG00000017944.1 pseudo_consens,overlapping_locus +11991 chr10 HAVANA gene 34109560 34815325 6513.0 - 0 ENSG00000148498.15 protein_coding PARD3 2 OTTHUMG00000017948.1 ncRNA_host,overlapping_locus +11992 chr10 HAVANA gene 34815767 34816386 302.0 + 0 ENSG00000226386.1 antisense PARD3-AS1 2 OTTHUMG00000017947.1 +11993 chr10 HAVANA gene 34875210 34875422 213.0 + 0 ENSG00000232525.1 processed_pseudogene SS18L2P1 1 OTTHUMG00000017946.1 pseudo_consens +11994 chr10 ENSEMBL gene 34926775 34926882 108.0 + 0 ENSG00000223047.1 snRNA RNU6-847P 3 +11995 chr10 ENSEMBL gene 34942969 34943075 107.0 + 0 ENSG00000222909.1 snRNA RNU6-193P 3 +11996 chr10 HAVANA gene 34965069 34966259 587.0 + 0 ENSG00000213724.4 processed_pseudogene PRDX2P2 1 OTTHUMG00000017949.2 pseudo_consens +11997 chr10 HAVANA gene 34969909 34975578 1161.0 + 0 ENSG00000283000.1 lincRNA AL392046.2 2 OTTHUMG00000191606.1 +11998 chr10 ENSEMBL gene 35079598 35079680 83.0 - 0 ENSG00000266228.1 miRNA MIR3611 3 +11999 chr10 HAVANA gene 35008551 35090642 5147.0 - 0 ENSG00000108094.14 protein_coding CUL2 2 OTTHUMG00000017950.4 ncRNA_host +12000 chr10 HAVANA gene 35098006 35127020 1422.0 - 0 ENSG00000230534.6 antisense AL392046.1 2 OTTHUMG00000017952.1 +12001 chr10 ENSEMBL gene 35135443 35135502 60.0 + 0 ENSG00000253054.1 snRNA RNU7-77P 3 +12002 chr10 HAVANA gene 35158306 35158640 335.0 + 0 ENSG00000233343.1 processed_pseudogene ATP6V1G1P4 1 OTTHUMG00000017951.1 pseudo_consens,overlapping_locus +12003 chr10 HAVANA gene 35210416 35210750 335.0 + 0 ENSG00000269952.1 sense_intronic AL117336.2 2 OTTHUMG00000183936.1 overlapping_locus +12004 chr10 HAVANA gene 35126791 35212958 5699.0 + 0 ENSG00000095794.19 protein_coding CREM 1 OTTHUMG00000017953.29 ncRNA_host,overlapping_locus +12005 chr10 HAVANA gene 35219894 35230598 380.0 - 0 ENSG00000233200.1 lincRNA AL117336.1 1 OTTHUMG00000017954.1 +12006 chr10 ENSEMBL gene 35231331 35231394 64.0 - 0 ENSG00000253070.1 snRNA RNU6-794P 3 +12007 chr10 ENSEMBL gene 35250959 35251052 94.0 - 0 ENSG00000200097.1 snRNA RNU6-1167P 3 +12008 chr10 HAVANA gene 35314552 35336401 1412.0 - 0 ENSG00000271335.5 antisense AL117336.3 2 OTTHUMG00000185120.1 +12009 chr10 HAVANA gene 35247025 35572669 5743.0 + 0 ENSG00000108100.17 protein_coding CCNY 1 OTTHUMG00000017955.4 +12010 chr10 HAVANA gene 35604485 35608153 3634.0 - 0 ENSG00000273312.2 antisense AL121749.1 2 OTTHUMG00000186092.2 +12011 chr10 HAVANA gene 35605410 35608935 1580.0 + 0 ENSG00000177291.3 protein_coding GJD4 2 OTTHUMG00000017957.1 +12012 chr10 ENSEMBL gene 35641172 35641252 81.0 - 0 ENSG00000284265.1 miRNA MIR4683 3 +12013 chr10 HAVANA gene 35638249 35642278 4030.0 - 0 ENSG00000177283.7 protein_coding FZD8 2 OTTHUMG00000017956.2 ncRNA_host +12014 chr10 HAVANA gene 35697300 35698037 738.0 + 0 ENSG00000226646.1 processed_pseudogene RPL7P37 1 OTTHUMG00000017958.1 pseudo_consens +12015 chr10 HAVANA gene 35778302 35800920 3550.0 + 0 ENSG00000280719.1 lincRNA PCAT5 2 OTTHUMG00000189575.1 +12016 chr10 HAVANA gene 35896874 35898963 868.0 - 0 ENSG00000227313.1 lincRNA AL365500.1 1 OTTHUMG00000017959.1 +12017 chr10 HAVANA gene 36089086 36089389 187.0 - 0 ENSG00000227475.1 lincRNA AL355300.1 2 OTTHUMG00000017960.1 +12018 chr10 HAVANA gene 36432882 36434484 1603.0 - 0 ENSG00000236626.1 processed_pseudogene MTND5P17 2 OTTHUMG00000017961.1 +12019 chr10 HAVANA gene 36434710 36435174 465.0 - 0 ENSG00000228694.1 processed_pseudogene MTND4P18 2 OTTHUMG00000017962.1 +12020 chr10 ENSEMBL gene 36438661 36438788 128.0 + 0 ENSG00000274458.1 snoRNA RF00561 3 +12021 chr10 HAVANA gene 36438616 36442392 665.0 + 0 ENSG00000237002.6 lincRNA AL590730.1 2 OTTHUMG00000017963.1 ncRNA_host +12022 chr10 HAVANA gene 36521721 36524234 2514.0 - 0 ENSG00000229644.6 processed_pseudogene NAMPTP1 2 OTTHUMG00000017964.1 +12023 chr10 ENSEMBL gene 36626015 36626138 124.0 - 0 ENSG00000207271.1 misc_RNA RF00019 3 +12024 chr10 HAVANA gene 36940109 36943932 293.0 + 0 ENSG00000238176.1 lincRNA AL390061.1 2 OTTHUMG00000017965.1 +12025 chr10 HAVANA gene 36944111 36944738 628.0 - 0 ENSG00000233533.1 processed_pseudogene MKNK2P1 1 OTTHUMG00000017966.1 pseudo_consens +12026 chr10 HAVANA gene 36995023 36995585 563.0 + 0 ENSG00000225355.1 processed_pseudogene ARL6IP1P2 1 OTTHUMG00000017967.1 pseudo_consens +12027 chr10 ENSEMBL gene 37135237 37135343 107.0 + 0 ENSG00000206796.1 snRNA RNU6-811P 3 +12028 chr10 HAVANA gene 37240887 37242049 335.0 + 0 ENSG00000234918.1 lincRNA AL157387.1 2 OTTHUMG00000017969.1 overlapping_locus +12029 chr10 ENSEMBL gene 37297398 37297689 292.0 + 0 ENSG00000244402.3 misc_RNA RN7SL314P 3 +12030 chr10 ENSEMBL gene 37303000 37303109 110.0 - 0 ENSG00000252621.1 misc_RNA RF00019 3 +12031 chr10 HAVANA gene 37337415 37338871 1457.0 + 0 ENSG00000237970.1 processed_pseudogene TMEM161BP1 1 OTTHUMG00000017972.1 pseudo_consens,overlapping_locus +12032 chr10 HAVANA gene 37248118 37347031 1175.0 + 0 ENSG00000235687.9 transcribed_unprocessed_pseudogene LINC00993 2 OTTHUMG00000017970.2 +12033 chr10 HAVANA gene 37348616 37349572 957.0 + 0 ENSG00000236313.1 processed_pseudogene VN1R53P 2 OTTHUMG00000017973.1 overlapping_locus +12034 chr10 HAVANA gene 37125788 37384111 5015.0 + 0 ENSG00000148513.17 protein_coding ANKRD30A 2 OTTHUMG00000017968.5 ncRNA_host,overlapping_locus +12035 chr10 HAVANA gene 37523011 37544701 1454.0 + 0 ENSG00000224920.1 unprocessed_pseudogene TACC1P1 2 OTTHUMG00000017974.1 +12036 chr10 HAVANA gene 37600796 37601368 573.0 - 0 ENSG00000225276.1 processed_pseudogene MTND1P18 2 OTTHUMG00000017975.1 +12037 chr10 HAVANA gene 37601440 37602974 1535.0 - 0 ENSG00000256892.2 protein_coding MTRNR2L7 2 OTTHUMG00000184979.1 +12038 chr10 HAVANA gene 37775371 37784131 712.0 - 0 ENSG00000226578.1 lincRNA AL132657.1 1 OTTHUMG00000017976.1 +12039 chr10 HAVANA gene 37791580 37791937 358.0 + 0 ENSG00000260137.1 lincRNA AL132657.2 2 OTTHUMG00000176164.1 +12040 chr10 HAVANA gene 37794276 37796109 1834.0 - 0 ENSG00000225192.1 processed_pseudogene ZNF33BP1 2 OTTHUMG00000017978.1 +12041 chr10 HAVANA gene 37818606 37820982 2240.0 - 0 ENSG00000228828.1 processed_pseudogene TLK2P2 1 OTTHUMG00000017977.1 pseudo_consens,overlapping_locus +12042 chr10 HAVANA gene 37776526 37858106 7289.0 - 0 ENSG00000198105.13 protein_coding ZNF248 2 OTTHUMG00000017980.4 overlapping_locus +12043 chr10 HAVANA gene 37857740 37859110 826.0 + 0 ENSG00000236514.1 antisense AL135791.1 2 OTTHUMG00000017979.1 +12044 chr10 HAVANA gene 37883594 37884109 241.0 + 0 ENSG00000151963.4 unprocessed_pseudogene ZNF37CP 2 OTTHUMG00000017981.1 +12045 chr10 HAVANA gene 37894637 37896666 2030.0 + 0 ENSG00000235197.1 processed_pseudogene ZNF33CP 2 OTTHUMG00000017982.1 +12046 chr10 HAVANA gene 37949572 37976633 4244.0 - 0 ENSG00000175395.15 protein_coding ZNF25 2 OTTHUMG00000019344.3 +12047 chr10 HAVANA gene 37976825 37992467 444.0 + 0 ENSG00000226447.1 lincRNA AL117337.1 1 OTTHUMG00000153548.2 +12048 chr10 ENSEMBL gene 37994863 37994975 113.0 + 0 ENSG00000206840.1 misc_RNA RF00019 3 +12049 chr10 ENSEMBL gene 38043873 38043975 103.0 - 0 ENSG00000252132.1 snRNA RNU6-795P 3 +12050 chr10 HAVANA gene 38010650 38065088 7523.0 + 0 ENSG00000189180.15 protein_coding ZNF33A 1 OTTHUMG00000017983.5 +12051 chr10 HAVANA gene 38068449 38068694 246.0 - 0 ENSG00000275675.1 unprocessed_pseudogene AL161931.1 2 OTTHUMG00000187784.1 +12052 chr10 HAVANA gene 38080056 38080877 822.0 - 0 ENSG00000226086.5 processed_pseudogene EIF3LP3 1 OTTHUMG00000017986.1 pseudo_consens +12053 chr10 HAVANA gene 38091764 38092051 288.0 - 0 ENSG00000235964.1 processed_pseudogene FXYD6P2 1 OTTHUMG00000017988.1 pseudo_consens +12054 chr10 HAVANA gene 38137337 38144399 7063.0 + 0 ENSG00000272983.1 lincRNA AL117339.4 2 OTTHUMG00000186215.1 +12055 chr10 HAVANA gene 38094334 38150293 13190.0 + 0 ENSG00000075407.18 protein_coding ZNF37A 2 OTTHUMG00000192066.2 overlapping_locus +12056 chr10 HAVANA gene 38161570 38161749 180.0 + 0 ENSG00000225965.1 processed_pseudogene AL117339.2 2 OTTHUMG00000017989.1 +12057 chr10 HAVANA gene 38164648 38212417 1534.0 + 0 ENSG00000224761.4 transcribed_unprocessed_pseudogene AL117339.1 2 OTTHUMG00000017984.3 overlapping_locus +12058 chr10 HAVANA gene 38250442 38250603 162.0 - 0 ENSG00000234941.1 processed_pseudogene AL117339.3 2 OTTHUMG00000017987.1 +12059 chr10 HAVANA gene 38247922 38333155 425.0 + 0 ENSG00000226113.1 transcribed_unprocessed_pseudogene AL133217.1 2 OTTHUMG00000017992.1 +12060 chr10 HAVANA gene 38094368 38360098 3955.0 + 0 ENSG00000283930.1 protein_coding AL117339.5 2 OTTHUMG00000017990.5 overlapping_locus +12061 chr10 HAVANA gene 38356380 38378505 1506.0 + 0 ENSG00000099251.14 transcribed_unprocessed_pseudogene HSD17B7P2 2 OTTHUMG00000017993.2 +12062 chr10 HAVANA gene 38383069 38402916 1204.0 - 0 ENSG00000120555.13 transcribed_unprocessed_pseudogene SEPT7P9 2 OTTHUMG00000017994.4 +12063 chr10 ENSEMBL gene 38423625 38423728 104.0 + 0 ENSG00000222314.1 snRNA RNU6-1118P 3 +12064 chr10 HAVANA gene 38403189 38452153 7213.0 + 0 ENSG00000276805.2 transcribed_unprocessed_pseudogene AL133216.2 2 OTTHUMG00000191561.2 +12065 chr10 HAVANA gene 38452987 38455365 1913.0 - 0 ENSG00000228882.1 processed_pseudogene CICP9 1 OTTHUMG00000017997.1 pseudo_consens +12066 chr10 HAVANA gene 38453181 38466176 727.0 + 0 ENSG00000203496.9 lincRNA AL133216.1 2 OTTHUMG00000017996.3 +12067 chr10 HAVANA gene 38601418 38605609 1601.0 + 0 ENSG00000215151.4 unprocessed_pseudogene ABCD1P2 2 OTTHUMG00000018003.2 +12068 chr10 HAVANA gene 38617255 38617344 90.0 + 0 ENSG00000277133.1 processed_pseudogene AL133173.2 2 OTTHUMG00000187792.1 +12069 chr10 HAVANA gene 38635908 38638082 2175.0 + 0 ENSG00000225638.1 processed_pseudogene PABPC1P12 1 OTTHUMG00000018002.1 pseudo_consens +12070 chr10 HAVANA gene 38640971 38689068 1334.0 - 0 ENSG00000233867.2 unprocessed_pseudogene SLC9B1P3 2 OTTHUMG00000018001.2 +12071 chr10 HAVANA gene 38696424 38697902 1479.0 + 0 ENSG00000227264.3 processed_pseudogene ACTR3BP5 1 OTTHUMG00000018000.1 pseudo_consens +12072 chr10 HAVANA gene 38713195 38719229 246.0 + 0 ENSG00000234541.2 unprocessed_pseudogene CHEK2P5 2 OTTHUMG00000017999.2 +12073 chr10 HAVANA gene 38762095 38762491 397.0 - 0 ENSG00000227679.1 processed_pseudogene AL133173.1 2 OTTHUMG00000017998.1 +12074 chr10 HAVANA gene 38783004 38783108 105.0 + 0 ENSG00000233832.1 processed_pseudogene AL590623.1 2 OTTHUMG00000018004.1 +12075 chr10 HAVANA gene 42149310 42149549 240.0 - 0 ENSG00000229485.1 processed_pseudogene KSR1P1 2 OTTHUMG00000018006.1 +12076 chr10 HAVANA gene 42185339 42185791 329.0 + 0 ENSG00000237592.2 IG_V_pseudogene IGKV1OR10-1 1 OTTHUMG00000018005.2 pseudo_consens +12077 chr10 HAVANA gene 42209990 42210383 394.0 + 0 ENSG00000271650.1 processed_pseudogene AL031601.1 1 OTTHUMG00000184666.1 pseudo_consens +12078 chr10 HAVANA gene 42242721 42276842 563.0 + 0 ENSG00000274167.4 transcribed_unprocessed_pseudogene AL031601.2 2 OTTHUMG00000187820.1 +12079 chr10 HAVANA gene 42279734 42281819 2086.0 - 0 ENSG00000228755.1 processed_pseudogene PABPC1P8 1 OTTHUMG00000018007.1 pseudo_consens +12080 chr10 HAVANA gene 42331866 42367974 7024.0 - 0 ENSG00000215146.5 transcribed_unprocessed_pseudogene BX322639.1 2 OTTHUMG00000018008.4 +12081 chr10 HAVANA gene 42470082 42470268 187.0 - 0 ENSG00000279239.1 transcribed_unprocessed_pseudogene AL391099.1 2 OTTHUMG00000189452.1 +12082 chr10 HAVANA gene 42408168 42475349 3831.0 - 0 ENSG00000182632.15 transcribed_unprocessed_pseudogene CCNYL2 2 OTTHUMG00000018009.9 +12083 chr10 HAVANA gene 42475543 42495336 2337.0 + 0 ENSG00000185904.11 lincRNA LINC00839 2 OTTHUMG00000018010.2 +12084 chr10 HAVANA gene 42513510 42552822 10256.0 - 0 ENSG00000234420.7 transcribed_processed_pseudogene ZNF37BP 1 OTTHUMG00000018011.4 +12085 chr10 HAVANA gene 42555440 42555724 285.0 + 0 ENSG00000270762.1 processed_pseudogene FXYD6P1 1 OTTHUMG00000184665.1 pseudo_consens +12086 chr10 HAVANA gene 42566677 42567483 807.0 + 0 ENSG00000233837.1 processed_pseudogene EIF3LP2 1 OTTHUMG00000018013.1 pseudo_consens +12087 chr10 HAVANA gene 42578500 42578727 228.0 + 0 ENSG00000277479.1 unprocessed_pseudogene AL022345.3 2 OTTHUMG00000187826.1 +12088 chr10 HAVANA gene 42579724 42579858 135.0 + 0 ENSG00000272319.2 unprocessed_pseudogene AL022345.1 2 OTTHUMG00000185670.2 +12089 chr10 HAVANA gene 42583241 42583375 135.0 + 0 ENSG00000272387.2 unprocessed_pseudogene AL022345.2 2 OTTHUMG00000191540.1 +12090 chr10 ENSEMBL gene 42605158 42605263 106.0 + 0 ENSG00000251783.1 snRNA RNU6-1170P 3 +12091 chr10 HAVANA gene 42574185 42638568 8307.0 - 0 ENSG00000196693.14 protein_coding ZNF33B 2 OTTHUMG00000018014.2 +12092 chr10 HAVANA gene 42638314 42645542 790.0 + 0 ENSG00000285884.1 bidirectional_promoter_lncRNA AL022345.4 2 OTTHUMG00000193271.2 +12093 chr10 HAVANA gene 42660728 42661776 1049.0 + 0 ENSG00000232109.1 processed_pseudogene VN1R54P 2 OTTHUMG00000018015.1 +12094 chr10 HAVANA gene 42674197 42691723 519.0 - 0 ENSG00000233515.1 lincRNA LINC01518 2 OTTHUMG00000018017.1 +12095 chr10 HAVANA gene 42696035 42706453 3965.0 + 0 ENSG00000234864.1 lincRNA AL022344.1 2 OTTHUMG00000018018.1 +12096 chr10 HAVANA gene 42694371 42714575 1790.0 - 0 ENSG00000231009.1 unprocessed_pseudogene CUBNP1 2 OTTHUMG00000018016.1 +12097 chr10 HAVANA gene 42725857 42737159 441.0 + 0 ENSG00000230425.1 unprocessed_pseudogene RSU1P1 2 OTTHUMG00000018019.1 +12098 chr10 HAVANA gene 42747544 42748687 594.0 - 0 ENSG00000270552.1 unprocessed_pseudogene DUXAP3 1 OTTHUMG00000184626.2 pseudo_consens +12099 chr10 HAVANA gene 42751178 42754297 3120.0 - 0 ENSG00000259869.2 lincRNA AL022344.2 2 OTTHUMG00000176167.2 +12100 chr10 ENSEMBL gene 42832447 42832550 104.0 - 0 ENSG00000252416.1 snRNA RNU6-885P 3 +12101 chr10 HAVANA gene 42782801 42834937 7753.0 + 0 ENSG00000165733.7 protein_coding BMS1 2 OTTHUMG00000018020.2 +12102 chr10 HAVANA gene 42871521 42874060 1714.0 + 0 ENSG00000234944.1 lincRNA AL365199.1 2 OTTHUMG00000018021.1 +12103 chr10 HAVANA gene 42979017 42981507 500.0 - 0 ENSG00000229630.1 lincRNA LINC01264 2 OTTHUMG00000018022.1 +12104 chr10 ENSEMBL gene 42997563 42997681 119.0 + 0 ENSG00000263795.1 miRNA MIR5100 3 +12105 chr10 HAVANA gene 43077027 43130351 6911.0 + 0 ENSG00000165731.18 protein_coding RET 2 OTTHUMG00000018024.5 +12106 chr10 HAVANA gene 43136824 43138334 1511.0 - 0 ENSG00000273008.1 lincRNA AC010864.1 2 OTTHUMG00000186248.1 +12107 chr10 HAVANA gene 43138486 43185308 3730.0 + 0 ENSG00000169826.7 protein_coding CSGALNACT2 2 OTTHUMG00000018023.1 +12108 chr10 HAVANA gene 43194535 43266919 6073.0 - 0 ENSG00000198915.11 protein_coding RASGEF1A 2 OTTHUMG00000018025.6 +12109 chr10 HAVANA gene 43323665 43327932 391.0 + 0 ENSG00000224265.1 lincRNA AC068707.1 2 OTTHUMG00000018026.1 +12110 chr10 ENSEMBL gene 43341786 43341910 125.0 + 0 ENSG00000221468.1 snRNA RNU6ATAC11P 3 +12111 chr10 HAVANA gene 43325833 43350792 1590.0 - 0 ENSG00000285712.1 lincRNA AC068707.2 2 OTTHUMG00000192900.1 +12112 chr10 HAVANA gene 43371642 43376335 827.0 + 0 ENSG00000150201.14 protein_coding FXYD4 2 OTTHUMG00000018027.4 +12113 chr10 HAVANA gene 43385617 43409166 3253.0 - 0 ENSG00000169813.16 protein_coding HNRNPF 2 OTTHUMG00000018029.3 retrogene +12114 chr10 ENSEMBL gene 43417249 43417438 190.0 - 0 ENSG00000221400.2 snoRNA SNORD3J 3 +12115 chr10 HAVANA gene 43420738 43422100 760.0 + 0 ENSG00000230555.2 lincRNA AL450326.1 2 OTTHUMG00000018028.2 +12116 chr10 ENSEMBL gene 43458065 43458129 65.0 + 0 ENSG00000252532.1 snRNA RNU7-193P 3 +12117 chr10 HAVANA gene 43436841 43483179 4976.0 + 0 ENSG00000243660.9 protein_coding ZNF487 1 OTTHUMG00000185507.2 ncRNA_host +12118 chr10 HAVANA gene 43523256 43525217 1962.0 + 0 ENSG00000236114.1 unprocessed_pseudogene AL450326.2 2 OTTHUMG00000018032.1 +12119 chr10 HAVANA gene 43556344 43574618 2509.0 - 0 ENSG00000196793.13 protein_coding ZNF239 2 OTTHUMG00000018033.2 +12120 chr10 HAVANA gene 43604843 43606251 1409.0 - 0 ENSG00000232004.1 processed_pseudogene CAP1P2 1 OTTHUMG00000018035.1 pseudo_consens +12121 chr10 HAVANA gene 43606407 43617903 2397.0 + 0 ENSG00000198298.12 protein_coding ZNF485 2 OTTHUMG00000018040.3 +12122 chr10 HAVANA gene 43630947 43631382 436.0 + 0 ENSG00000238263.1 processed_pseudogene RPL21P88 1 OTTHUMG00000018042.1 pseudo_consens,overlapping_locus +12123 chr10 HAVANA gene 43630882 43631564 411.0 - 0 ENSG00000237389.1 lincRNA AL645634.2 1 OTTHUMG00000018038.1 +12124 chr10 HAVANA gene 43643872 43645047 434.0 + 0 ENSG00000226245.1 antisense ZNF32-AS1 2 OTTHUMG00000018036.1 overlapping_locus +12125 chr10 HAVANA gene 43645942 43648019 905.0 + 0 ENSG00000230565.1 antisense ZNF32-AS2 2 OTTHUMG00000018039.1 overlapping_locus +12126 chr10 HAVANA gene 43643859 43648856 1436.0 - 0 ENSG00000169740.13 protein_coding ZNF32 2 OTTHUMG00000018043.1 +12127 chr10 HAVANA gene 43665668 43667005 462.0 + 0 ENSG00000228426.1 lincRNA AL645634.1 1 OTTHUMG00000018041.1 overlapping_locus +12128 chr10 HAVANA gene 43628817 43674703 1932.0 + 0 ENSG00000223910.1 antisense ZNF32-AS3 2 OTTHUMG00000018037.1 overlapping_locus +12129 chr10 HAVANA gene 43728217 43728728 512.0 + 0 ENSG00000271173.1 processed_pseudogene AL355989.2 1 OTTHUMG00000184663.1 pseudo_consens +12130 chr10 HAVANA gene 43732334 43732584 251.0 + 0 ENSG00000224162.1 processed_pseudogene UQCRHP3 1 OTTHUMG00000018046.1 pseudo_consens +12131 chr10 HAVANA gene 43741437 43742350 299.0 - 0 ENSG00000223746.1 processed_pseudogene ELOCP30 1 OTTHUMG00000018045.1 pseudo_consens +12132 chr10 HAVANA gene 43777562 43778825 453.0 - 0 ENSG00000234973.5 lincRNA AL355989.1 1 OTTHUMG00000018047.1 +12133 chr10 HAVANA gene 43789249 43790387 1139.0 - 0 ENSG00000226790.3 processed_pseudogene HNRNPA3P1 1 OTTHUMG00000039983.1 pseudo_consens +12134 chr10 HAVANA gene 43845261 43895433 3825.0 + 0 ENSG00000226808.2 lincRNA LINC00840 2 OTTHUMG00000018049.3 +12135 chr10 HAVANA gene 43900891 43912331 1766.0 - 0 ENSG00000236769.2 lincRNA AL139237.2 2 OTTHUMG00000018052.2 +12136 chr10 HAVANA gene 43912444 43914236 513.0 + 0 ENSG00000227029.1 lincRNA AL139237.1 2 OTTHUMG00000018050.1 +12137 chr10 HAVANA gene 43939003 43944466 2126.0 + 0 ENSG00000233395.1 lincRNA LINC00841 2 OTTHUMG00000018053.1 +12138 chr10 HAVANA gene 44259602 44261813 841.0 - 0 ENSG00000237590.1 lincRNA AL137026.2 1 OTTHUMG00000018055.1 +12139 chr10 HAVANA gene 44282926 44293709 1452.0 - 0 ENSG00000229116.2 lincRNA AL137026.1 1 OTTHUMG00000018056.2 +12140 chr10 HAVANA gene 44292569 44294649 1714.0 + 0 ENSG00000277288.4 protein_coding C10orf142 2 OTTHUMG00000189253.2 +12141 chr10 HAVANA gene 44370165 44386493 6077.0 - 0 ENSG00000107562.16 protein_coding CXCL12 1 OTTHUMG00000018054.2 +12142 chr10 HAVANA gene 44414649 44415153 505.0 - 0 ENSG00000214089.3 processed_pseudogene RPL9P21 1 OTTHUMG00000018057.1 pseudo_consens +12143 chr10 HAVANA gene 44488335 44488445 111.0 - 0 ENSG00000270767.1 processed_pseudogene AL356157.2 1 OTTHUMG00000184632.1 pseudo_consens +12144 chr10 HAVANA gene 44591208 44602104 732.0 - 0 ENSG00000234580.1 lincRNA AL356157.1 1 OTTHUMG00000018058.1 +12145 chr10 HAVANA gene 44806443 44808223 1781.0 + 0 ENSG00000227395.1 processed_pseudogene EIF2AP4 1 OTTHUMG00000018059.1 pseudo_consens +12146 chr10 HAVANA gene 44899614 44920220 1444.0 - 0 ENSG00000234504.2 antisense AL353801.2 2 OTTHUMG00000018065.2 overlapping_locus +12147 chr10 HAVANA gene 44911200 44937002 3157.0 + 0 ENSG00000187783.11 protein_coding TMEM72 1 OTTHUMG00000018067.3 +12148 chr10 HAVANA gene 44937508 44955725 425.0 + 0 ENSG00000223462.2 lincRNA AL353801.1 2 OTTHUMG00000018061.3 +12149 chr10 HAVANA gene 44958917 44959458 542.0 - 0 ENSG00000273363.1 sense_intronic AL353801.3 2 OTTHUMG00000186468.1 overlapping_locus +12150 chr10 HAVANA gene 44811024 44959689 3300.0 - 0 ENSG00000224812.2 antisense TMEM72-AS1 2 OTTHUMG00000018062.2 overlapping_locus +12151 chr10 HAVANA gene 44970981 44978810 2979.0 - 0 ENSG00000165507.8 protein_coding DEPP1 2 OTTHUMG00000018063.3 +12152 chr10 HAVANA gene 44959407 44995891 9481.0 + 0 ENSG00000107551.20 protein_coding RASSF4 2 OTTHUMG00000018060.6 +12153 chr10 HAVANA gene 44997698 45000888 3078.0 - 0 ENSG00000165511.6 antisense C10orf25 2 OTTHUMG00000018066.1 +12154 chr10 HAVANA gene 45000475 45005326 2551.0 + 0 ENSG00000165512.4 protein_coding ZNF22 2 OTTHUMG00000018064.1 +12155 chr10 HAVANA gene 45055656 45056268 613.0 + 0 ENSG00000270258.1 processed_pseudogene DUXAP4 1 OTTHUMG00000184653.2 pseudo_consens +12156 chr10 HAVANA gene 45073146 45073541 396.0 - 0 ENSG00000228462.1 processed_pseudogene RPS19P7 1 OTTHUMG00000018070.1 pseudo_consens,overlapping_locus +12157 chr10 HAVANA gene 45002222 45076066 4357.0 - 0 ENSG00000226937.9 transcribed_processed_pseudogene CEP164P1 1 OTTHUMG00000018069.3 pseudo_consens,overlapping_locus +12158 chr10 HAVANA gene 45016080 45147221 1219.0 - 0 ENSG00000277757.4 processed_transcript AL358394.3 2 OTTHUMG00000188634.2 overlapping_locus +12159 chr10 HAVANA gene 45127318 45148914 1784.0 + 0 ENSG00000235690.2 unprocessed_pseudogene CUBNP3 2 OTTHUMG00000018073.1 overlapping_locus +12160 chr10 HAVANA gene 45151445 45151915 471.0 - 0 ENSG00000236442.1 processed_pseudogene ANKRD54P1 1 OTTHUMG00000018075.1 pseudo_consens +12161 chr10 HAVANA gene 45099487 45154596 3274.0 - 0 ENSG00000232554.8 transcribed_unprocessed_pseudogene RSU1P2 2 OTTHUMG00000185442.3 overlapping_locus +12162 chr10 ENSEMBL gene 45164014 45164088 75.0 + 0 ENSG00000263476.1 miRNA MIR3156-1 3 +12163 chr10 HAVANA gene 45147394 45171389 3637.0 + 0 ENSG00000243349.2 processed_transcript AL358394.2 2 OTTHUMG00000018074.2 ncRNA_host,overlapping_locus +12164 chr10 HAVANA gene 45156775 45176925 1070.0 + 0 ENSG00000230501.1 unprocessed_pseudogene ANKRD30BP3 2 OTTHUMG00000018076.1 overlapping_locus +12165 chr10 HAVANA gene 45180400 45180616 217.0 + 0 ENSG00000275312.1 unprocessed_pseudogene AL512324.1 2 OTTHUMG00000187828.1 +12166 chr10 HAVANA gene 45164228 45181427 535.0 - 0 ENSG00000227683.1 lincRNA AL358394.1 2 OTTHUMG00000018077.1 +12167 chr10 ENSEMBL gene 45188790 45188896 107.0 - 0 ENSG00000207071.1 snRNA RNU6-1207P 3 +12168 chr10 HAVANA gene 45187292 45198323 882.0 - 0 ENSG00000278531.1 unprocessed_pseudogene AL512324.3 2 OTTHUMG00000187830.1 +12169 chr10 HAVANA gene 45232026 45247361 1139.0 - 0 ENSG00000234993.1 unprocessed_pseudogene CUBNP2 2 OTTHUMG00000018078.1 +12170 chr10 HAVANA gene 45255640 45263252 5756.0 + 0 ENSG00000224402.2 transcribed_unitary_pseudogene OR6D1P 2 OTTHUMG00000018079.2 +12171 chr10 HAVANA gene 45302298 45315608 2689.0 - 0 ENSG00000256574.7 protein_coding OR13A1 2 OTTHUMG00000018080.3 +12172 chr10 HAVANA gene 45374176 45446119 3730.0 + 0 ENSG00000012779.10 protein_coding ALOX5 2 OTTHUMG00000018081.3 +12173 chr10 HAVANA gene 45444570 45453121 462.0 - 0 ENSG00000231964.1 antisense AL731567.1 2 OTTHUMG00000018082.1 +12174 chr10 HAVANA gene 45454585 45594906 7539.0 - 0 ENSG00000165406.15 protein_coding MARCH8 2 OTTHUMG00000019345.5 +12175 chr10 HAVANA gene 45615501 45672780 6232.0 - 0 ENSG00000172671.19 protein_coding ZFAND4 1 OTTHUMG00000018085.7 +12176 chr10 HAVANA gene 45678692 45700532 2418.0 + 0 ENSG00000230869.1 unprocessed_pseudogene AGAP10P 2 OTTHUMG00000018083.1 +12177 chr10 HAVANA gene 45725694 45726038 345.0 - 0 ENSG00000228702.1 processed_pseudogene AL645998.1 1 OTTHUMG00000018086.1 pseudo_consens,overlapping_locus +12178 chr10 HAVANA gene 45706431 45727231 2087.0 - 0 ENSG00000237840.6 transcribed_unprocessed_pseudogene FAM21FP 2 OTTHUMG00000018087.2 overlapping_locus +12179 chr10 HAVANA gene 45727200 45792961 5702.0 + 0 ENSG00000172661.18 protein_coding WASHC2C 2 OTTHUMG00000018089.6 +12180 chr10 HAVANA gene 45812648 45812944 297.0 - 0 ENSG00000270434.1 processed_pseudogene AC012044.1 1 OTTHUMG00000184633.1 pseudo_consens +12181 chr10 HAVANA gene 45815428 45817324 322.0 - 0 ENSG00000231122.5 transcribed_unprocessed_pseudogene FAM25E 2 OTTHUMG00000018092.4 +12182 chr10 HAVANA gene 45825594 45853875 3474.0 - 0 ENSG00000188234.13 protein_coding AGAP4 2 OTTHUMG00000018088.2 +12183 chr10 ENSEMBL gene 45856307 45856422 116.0 + 0 ENSG00000239152.1 rRNA_pseudogene RNA5SP310 3 +12184 chr10 HAVANA gene 45940522 45940851 330.0 + 0 ENSG00000264217.2 processed_pseudogene RPL35AP25 1 OTTHUMG00000188288.1 pseudo_consens +12185 chr10 HAVANA gene 45854093 45972154 3214.0 - 0 ENSG00000239883.8 transcribed_unprocessed_pseudogene PARGP1 2 OTTHUMG00000018090.4 +12186 chr10 ENSEMBL gene 45984610 45984810 201.0 + 0 ENSG00000265733.1 snoRNA SNORA74C-1 3 +12187 chr10 HAVANA gene 45972449 46003734 1222.0 + 0 ENSG00000265354.3 protein_coding TIMM23 2 OTTHUMG00000188299.1 ncRNA_host +12188 chr10 HAVANA gene 46005088 46030714 4079.0 - 0 ENSG00000266412.5 protein_coding NCOA4 2 OTTHUMG00000188314.1 +12189 chr10 HAVANA gene 46033307 46046269 492.0 - 0 ENSG00000263639.5 protein_coding MSMB 2 OTTHUMG00000188315.1 +12190 chr10 HAVANA gene 46063250 46063715 466.0 + 0 ENSG00000280012.2 processed_pseudogene RPL23AP61 1 OTTHUMG00000191379.1 pseudo_consens +12191 chr10 HAVANA gene 46109621 46131358 2062.0 + 0 ENSG00000264204.2 unprocessed_pseudogene AGAP7P 2 OTTHUMG00000188316.1 +12192 chr10 HAVANA gene 46233885 46273557 1829.0 - 0 ENSG00000263482.3 unprocessed_pseudogene ANTXRLP1 2 OTTHUMG00000188317.1 +12193 chr10 HAVANA gene 46286345 46330207 3101.0 + 0 ENSG00000274209.4 protein_coding ANTXRL 2 OTTHUMG00000188318.4 +12194 chr10 HAVANA gene 46337224 46358714 2060.0 + 0 ENSG00000279058.2 unprocessed_pseudogene AGAP14P 2 OTTHUMG00000192004.1 +12195 chr10 HAVANA gene 46369113 46373563 544.0 + 0 ENSG00000273225.4 transcribed_unprocessed_pseudogene FAM25BP 2 OTTHUMG00000189284.2 overlapping_locus +12196 chr10 HAVANA gene 46370759 46382626 674.0 + 0 ENSG00000279458.2 processed_transcript AC244230.1 2 OTTHUMG00000189285.2 overlapping_locus +12197 chr10 HAVANA gene 46375627 46391784 2860.0 + 0 ENSG00000264230.8 protein_coding ANXA8L1 2 OTTHUMG00000018131.5 overlapping_locus +12198 chr10 HAVANA gene 46415853 46416413 561.0 + 0 ENSG00000213412.3 processed_pseudogene HNRNPA1P33 1 OTTHUMG00000018110.2 pseudo_consens,overlapping_locus +12199 chr10 HAVANA gene 46398362 46453306 2872.0 + 0 ENSG00000285294.1 lincRNA LINC00842 2 OTTHUMG00000192454.1 overlapping_locus +12200 chr10 HAVANA gene 46461099 46465881 1956.0 - 0 ENSG00000204174.7 protein_coding NPY4R 2 OTTHUMG00000018108.3 +12201 chr10 HAVANA gene 46375752 46537864 1700.0 + 0 ENSG00000285402.1 processed_transcript AC244230.2 2 OTTHUMG00000192453.1 overlapping_locus +12202 chr10 HAVANA gene 46549044 46555530 1968.0 - 0 ENSG00000204175.5 protein_coding GPRIN2 2 OTTHUMG00000018107.1 +12203 chr10 HAVANA gene 46578217 46594173 7158.0 + 0 ENSG00000204176.13 protein_coding SYT15 2 OTTHUMG00000018103.6 +12204 chr10 HAVANA gene 46582782 46598145 991.0 - 0 ENSG00000231187.2 antisense AL356056.2 1 OTTHUMG00000018106.2 +12205 chr10 HAVANA gene 46597918 46612154 2755.0 + 0 ENSG00000229227.8 lincRNA AL356056.1 2 OTTHUMG00000018105.5 +12206 chr10 HAVANA gene 46634911 46635466 556.0 - 0 ENSG00000229927.2 processed_pseudogene RHEBP1 1 OTTHUMG00000018102.2 pseudo_consens,overlapping_locus +12207 chr10 HAVANA gene 46632387 46635472 551.0 + 0 ENSG00000272430.1 lincRNA AL356056.3 2 OTTHUMG00000185782.1 +12208 chr10 ENSEMBL gene 46648948 46649276 329.0 + 0 ENSG00000274186.1 misc_RNA RN7SL248P 3 +12209 chr10 HAVANA gene 46610474 46652025 3630.0 - 0 ENSG00000165874.13 transcribed_unprocessed_pseudogene SHLD2P1 1 OTTHUMG00000018104.4 pseudo_consens,overlapping_locus +12210 chr10 HAVANA gene 46740571 46751733 1199.0 + 0 ENSG00000285662.1 lincRNA AL731733.1 2 OTTHUMG00000193026.2 +12211 chr10 HAVANA gene 46753605 46759740 1476.0 + 0 ENSG00000280913.2 transcribed_unprocessed_pseudogene CTSLP2 2 OTTHUMG00000189702.2 +12212 chr10 HAVANA gene 46774421 46776180 1760.0 - 0 ENSG00000215097.3 processed_pseudogene DUSP8P3 1 OTTHUMG00000018099.2 pseudo_consens,overlapping_locus +12213 chr10 HAVANA gene 46759019 46786770 669.0 - 0 ENSG00000265366.6 transcribed_unprocessed_pseudogene GLUD1P2 1 OTTHUMG00000018100.3 pseudo_consens +12214 chr10 ENSEMBL gene 46807458 46807573 116.0 - 0 ENSG00000238405.1 rRNA_pseudogene RNA5SP311 3 +12215 chr10 HAVANA gene 46786674 46811989 4561.0 + 0 ENSG00000204177.10 transcribed_unprocessed_pseudogene BMS1P1 2 OTTHUMG00000018098.5 +12216 chr10 HAVANA gene 46816516 46832476 363.0 + 0 ENSG00000243289.1 unprocessed_pseudogene AGAP13P 2 OTTHUMG00000018095.2 +12217 chr10 HAVANA gene 46870858 46894562 1347.0 + 0 ENSG00000150175.13 unprocessed_pseudogene FRMPD2B 2 OTTHUMG00000018093.3 +12218 chr10 HAVANA gene 46911396 47002488 4506.0 + 0 ENSG00000204179.10 protein_coding PTPN20 2 OTTHUMG00000018094.10 +12219 chr10 HAVANA gene 47300386 47313547 2458.0 + 0 ENSG00000266524.2 protein_coding GDF10 2 OTTHUMG00000188319.1 +12220 chr10 HAVANA gene 47322490 47326270 1955.0 + 0 ENSG00000263761.2 protein_coding GDF2 2 OTTHUMG00000188320.1 +12221 chr10 HAVANA gene 47348371 47357875 4276.0 + 0 ENSG00000265203.1 protein_coding RBP3 2 OTTHUMG00000188321.1 +12222 chr10 HAVANA gene 47365496 47384273 3496.0 - 0 ENSG00000265763.3 protein_coding ZNF488 2 OTTHUMG00000188322.1 +12223 chr10 HAVANA gene 47460162 47484158 4955.0 - 0 ENSG00000265190.6 protein_coding ANXA8 2 OTTHUMG00000188209.3 overlapping_locus +12224 chr10 HAVANA gene 47484457 47484754 298.0 - 0 ENSG00000270369.1 processed_pseudogene AL591684.3 1 OTTHUMG00000184691.1 pseudo_consens +12225 chr10 HAVANA gene 47487219 47491693 466.0 - 0 ENSG00000189090.7 protein_coding FAM25G 2 OTTHUMG00000018117.2 +12226 chr10 HAVANA gene 47496212 47502195 234.0 + 0 ENSG00000224919.1 antisense AL591684.1 2 OTTHUMG00000018119.1 +12227 chr10 HAVANA gene 47501854 47523638 2387.0 - 0 ENSG00000204172.12 protein_coding AGAP9 2 OTTHUMG00000018115.3 overlapping_locus +12228 chr10 ENSEMBL gene 47532352 47532467 116.0 + 0 ENSG00000252877.1 rRNA_pseudogene RNA5SP312 3 +12229 chr10 HAVANA gene 47538377 47551954 2153.0 - 0 ENSG00000251079.6 transcribed_unprocessed_pseudogene BMS1P2 2 OTTHUMG00000018113.3 overlapping_locus +12230 chr10 HAVANA gene 47517816 47553514 1625.0 - 0 ENSG00000254929.6 processed_transcript AL591684.2 2 OTTHUMG00000167454.2 overlapping_locus +12231 chr10 HAVANA gene 47564256 47566016 1761.0 + 0 ENSG00000215065.3 processed_pseudogene DUSP8P4 1 OTTHUMG00000018111.2 pseudo_consens,overlapping_locus +12232 chr10 HAVANA gene 47563604 47569697 203.0 + 0 ENSG00000265630.2 unprocessed_pseudogene GLUD1P8 1 OTTHUMG00000018118.2 pseudo_consens,overlapping_locus +12233 chr10 HAVANA gene 47581211 47582321 394.0 - 0 ENSG00000266217.2 unprocessed_pseudogene CTSLP2 2 OTTHUMG00000018112.2 +12234 chr10 HAVANA gene 47588681 47599830 1217.0 - 0 ENSG00000264404.2 lincRNA BX547991.1 2 OTTHUMG00000018097.4 +12235 chr10 ENSEMBL gene 47692399 47692727 329.0 - 0 ENSG00000276544.1 misc_RNA RN7SL453P 3 +12236 chr10 HAVANA gene 47706203 47706802 600.0 + 0 ENSG00000226964.1 processed_pseudogene RHEBP2 1 OTTHUMG00000018122.1 pseudo_consens,overlapping_locus +12237 chr10 HAVANA gene 47689707 47730436 2712.0 + 0 ENSG00000189014.7 unprocessed_pseudogene SHLD2P3 1 OTTHUMG00000018121.1 pseudo_consens,overlapping_locus +12238 chr10 HAVANA gene 47750864 47763592 5526.0 - 0 ENSG00000277758.4 protein_coding FO681492.1 2 OTTHUMG00000189287.1 +12239 chr10 HAVANA gene 47918739 47923524 1956.0 + 0 ENSG00000264717.5 protein_coding NPY4R2 2 OTTHUMG00000188323.2 +12240 chr10 HAVANA gene 47970043 47973496 826.0 - 0 ENSG00000273760.1 lincRNA AC245041.1 2 OTTHUMG00000189092.1 +12241 chr10 HAVANA gene 47908064 47991850 2467.0 - 0 ENSG00000276850.4 lincRNA AC245041.2 2 OTTHUMG00000189091.2 +12242 chr10 HAVANA gene 47995355 47999791 319.0 - 0 ENSG00000276430.2 protein_coding FAM25C 2 OTTHUMG00000018130.4 +12243 chr10 HAVANA gene 48009873 48031640 2400.0 - 0 ENSG00000265018.6 transcribed_unprocessed_pseudogene AGAP12P 1 OTTHUMG00000018164.4 pseudo_consens +12244 chr10 ENSEMBL gene 48040462 48040577 116.0 + 0 ENSG00000252149.1 rRNA_pseudogene RNA5SP315 3 +12245 chr10 HAVANA gene 48050282 48060016 1052.0 - 0 ENSG00000270025.2 transcribed_unprocessed_pseudogene BMS1P7 2 OTTHUMG00000018163.3 +12246 chr10 HAVANA gene 48064308 48119455 920.0 - 0 ENSG00000278561.1 unprocessed_pseudogene PTPN20CP 2 OTTHUMG00000018166.3 +12247 chr10 HAVANA gene 48246525 48248512 1811.0 + 0 ENSG00000285786.1 antisense AC074325.1 2 OTTHUMG00000193051.2 +12248 chr10 HAVANA gene 48153088 48274870 8791.0 - 0 ENSG00000170324.20 protein_coding FRMPD2 2 OTTHUMG00000018171.6 +12249 chr10 HAVANA gene 48292699 48293417 719.0 + 0 ENSG00000225482.1 processed_pseudogene RPS6P14 1 OTTHUMG00000018170.1 pseudo_consens +12250 chr10 HAVANA gene 48306639 48439360 9629.0 + 0 ENSG00000107643.16 protein_coding MAPK8 2 OTTHUMG00000018172.5 +12251 chr10 HAVANA gene 48443836 48445820 1985.0 - 0 ENSG00000279822.1 TEC AC016397.2 2 OTTHUMG00000176172.1 +12252 chr10 HAVANA gene 48510525 48511589 470.0 - 0 ENSG00000248682.1 sense_intronic ARHGAP22-IT1 2 OTTHUMG00000159998.1 overlapping_locus +12253 chr10 HAVANA gene 48546472 48546713 242.0 - 0 ENSG00000231906.1 processed_pseudogene AC016397.1 1 OTTHUMG00000018173.1 pseudo_consens,overlapping_locus +12254 chr10 HAVANA gene 48624004 48625093 597.0 - 0 ENSG00000251413.1 sense_intronic AC068898.2 2 OTTHUMG00000159999.1 overlapping_locus +12255 chr10 HAVANA gene 48446034 48656265 6783.0 - 0 ENSG00000128805.14 protein_coding ARHGAP22 1 OTTHUMG00000018176.5 overlapping_locus +12256 chr10 HAVANA gene 48664199 48672424 335.0 - 0 ENSG00000236800.1 lincRNA AC068898.1 1 OTTHUMG00000018174.1 +12257 chr10 HAVANA gene 48745545 48746128 584.0 - 0 ENSG00000228754.1 processed_pseudogene RPL13AP19 1 OTTHUMG00000018177.1 pseudo_consens +12258 chr10 HAVANA gene 48878022 48878649 273.0 + 0 ENSG00000228403.1 sense_intronic AC035139.1 1 OTTHUMG00000018179.1 overlapping_locus +12259 chr10 HAVANA gene 48909483 48914232 1617.0 - 0 ENSG00000165383.11 protein_coding LRRC18 2 OTTHUMG00000018182.1 overlapping_locus +12260 chr10 HAVANA gene 48883955 48935213 559.0 - 0 ENSG00000241577.1 sense_overlapping AC060234.3 2 OTTHUMG00000018183.1 overlapping_locus +12261 chr10 HAVANA gene 48684876 48982956 13678.0 + 0 ENSG00000128815.19 protein_coding WDFY4 2 OTTHUMG00000018180.6 overlapping_locus +12262 chr10 ENSEMBL gene 48985512 48985587 76.0 - 0 ENSG00000264800.1 miRNA MIR4294 3 +12263 chr10 HAVANA gene 48976554 48993046 1945.0 - 0 ENSG00000233665.8 processed_transcript AC060234.2 1 OTTHUMG00000018181.5 ncRNA_host +12264 chr10 HAVANA gene 48984564 49018897 474.0 + 0 ENSG00000226576.1 antisense AC060234.1 2 OTTHUMG00000018185.1 +12265 chr10 HAVANA gene 49014245 49115509 8633.0 - 0 ENSG00000165633.12 protein_coding VSTM4 2 OTTHUMG00000018184.3 +12266 chr10 HAVANA gene 49131154 49134008 1401.0 - 0 ENSG00000172538.6 protein_coding FAM170B 2 OTTHUMG00000018187.1 +12267 chr10 HAVANA gene 49121839 49151547 2273.0 + 0 ENSG00000234736.5 antisense FAM170B-AS1 2 OTTHUMG00000018186.1 +12268 chr10 HAVANA gene 49154725 49188585 4123.0 - 0 ENSG00000204161.13 protein_coding TMEM273 2 OTTHUMG00000018188.5 +12269 chr10 HAVANA gene 49296112 49299018 963.0 - 0 ENSG00000236208.1 antisense C10orf71-AS1 1 OTTHUMG00000018189.1 +12270 chr10 HAVANA gene 49299193 49327487 5411.0 + 0 ENSG00000177354.11 protein_coding C10orf71 2 OTTHUMG00000018190.2 +12271 chr10 HAVANA gene 49364181 49396016 2890.0 - 0 ENSG00000165606.8 protein_coding DRGX 2 OTTHUMG00000018192.3 +12272 chr10 HAVANA gene 49419277 49472903 435.0 + 0 ENSG00000235939.1 antisense AL138760.1 2 OTTHUMG00000018194.1 +12273 chr10 HAVANA gene 49455368 49539538 16737.0 - 0 ENSG00000225830.12 protein_coding ERCC6 2 OTTHUMG00000018195.5 +12274 chr10 HAVANA gene 49551308 49552652 607.0 + 0 ENSG00000271237.1 processed_pseudogene HMGB1P50 1 OTTHUMG00000184651.1 pseudo_consens +12275 chr10 HAVANA gene 49610301 49612720 2420.0 + 0 ENSG00000187714.6 protein_coding SLC18A3 2 OTTHUMG00000018196.1 overlapping_locus,retrogene +12276 chr10 HAVANA gene 49609095 49665104 3750.0 + 0 ENSG00000070748.18 protein_coding CHAT 2 OTTHUMG00000018198.3 overlapping_locus +12277 chr10 HAVANA gene 49679651 49710261 4316.0 + 0 ENSG00000178645.12 protein_coding C10orf53 2 OTTHUMG00000018199.1 +12278 chr10 HAVANA gene 49734643 49762379 5724.0 - 0 ENSG00000197444.9 protein_coding OGDHL 2 OTTHUMG00000018200.1 +12279 chr10 HAVANA gene 49771841 49773299 1053.0 + 0 ENSG00000226389.3 processed_pseudogene MAPK6P6 1 OTTHUMG00000018197.1 pseudo_consens +12280 chr10 HAVANA gene 49815096 49815562 467.0 + 0 ENSG00000229870.1 processed_pseudogene RPL21P89 1 OTTHUMG00000157152.1 pseudo_consens +12281 chr10 HAVANA gene 49909613 49909942 330.0 + 0 ENSG00000230166.1 processed_pseudogene RPL35AP24 1 OTTHUMG00000018202.1 pseudo_consens +12282 chr10 ENSEMBL gene 49954214 49954414 201.0 + 0 ENSG00000223111.1 snoRNA SNORA74C-2 3 +12283 chr10 HAVANA gene 49818279 49970203 5129.0 - 0 ENSG00000227345.8 protein_coding PARG 2 OTTHUMG00000018201.3 +12284 chr10 HAVANA gene 49942033 49974850 3056.0 + 0 ENSG00000204152.10 protein_coding TIMM23B 2 OTTHUMG00000018213.3 ncRNA_host +12285 chr10 ENSEMBL gene 49979665 49979780 116.0 - 0 ENSG00000222108.1 rRNA_pseudogene RNA5SP317 3 +12286 chr10 HAVANA gene 49972763 49982053 711.0 + 0 ENSG00000178440.5 lincRNA LINC00843 2 OTTHUMG00000018218.2 +12287 chr10 HAVANA gene 49981420 49988899 1152.0 - 0 ENSG00000285803.1 antisense AL442003.1 2 OTTHUMG00000193256.1 +12288 chr10 HAVANA gene 49982190 50010499 3160.0 + 0 ENSG00000204149.10 protein_coding AGAP6 1 OTTHUMG00000018220.4 +12289 chr10 HAVANA gene 50025135 50027363 2229.0 - 0 ENSG00000226631.1 processed_pseudogene SLC9A3P3 1 OTTHUMG00000018219.1 pseudo_consens,overlapping_locus +12290 chr10 HAVANA gene 50021182 50067803 2549.0 - 0 ENSG00000235618.8 transcribed_unprocessed_pseudogene FAM21EP 1 OTTHUMG00000018221.2 pseudo_consens,overlapping_locus +12291 chr10 HAVANA gene 50067888 50133506 5159.0 + 0 ENSG00000099290.16 protein_coding WASHC2A 2 OTTHUMG00000018225.4 +12292 chr10 HAVANA gene 50150603 50152287 1685.0 + 0 ENSG00000233011.1 processed_pseudogene SLC9A3P1 1 OTTHUMG00000018226.1 pseudo_consens +12293 chr10 HAVANA gene 50182778 50248610 6985.0 - 0 ENSG00000188611.14 protein_coding ASAH2 2 OTTHUMG00000018223.3 +12294 chr10 HAVANA gene 50264978 50266815 1838.0 + 0 ENSG00000225137.1 processed_pseudogene DYNC1I2P1 1 OTTHUMG00000018224.1 pseudo_consens +12295 chr10 HAVANA gene 50334538 50336123 1586.0 + 0 ENSG00000279863.1 TEC AC069547.1 2 OTTHUMG00000187416.1 +12296 chr10 HAVANA gene 50472814 50474246 373.0 + 0 ENSG00000225303.2 antisense AL117341.1 2 OTTHUMG00000018228.2 +12297 chr10 ENSEMBL gene 50590652 50590712 61.0 - 0 ENSG00000238523.1 snRNA RNU7-107P 3 +12298 chr10 HAVANA gene 50305586 50625163 6429.0 - 0 ENSG00000198964.13 protein_coding SGMS1 2 OTTHUMG00000018231.7 ncRNA_host,overlapping_locus +12299 chr10 HAVANA gene 50629532 50631075 1544.0 - 0 ENSG00000231588.1 processed_pseudogene SHQ1P1 1 OTTHUMG00000018229.1 pseudo_consens +12300 chr10 HAVANA gene 50624951 50641451 12420.0 + 0 ENSG00000226200.6 antisense SGMS1-AS1 2 OTTHUMG00000018230.2 +12301 chr10 HAVANA gene 50655967 50660472 2966.0 + 0 ENSG00000231345.3 transcribed_processed_pseudogene BEND3P1 1 OTTHUMG00000018236.1 pseudo_consens +12302 chr10 HAVANA gene 50676743 50686326 2498.0 + 0 ENSG00000232706.3 unprocessed_pseudogene NUTM2HP 2 OTTHUMG00000018235.2 +12303 chr10 HAVANA gene 50695592 50695981 390.0 + 0 ENSG00000226168.1 processed_pseudogene AL589794.1 2 OTTHUMG00000018234.1 +12304 chr10 HAVANA gene 50705380 50708906 1002.0 - 0 ENSG00000230011.2 unprocessed_pseudogene CTSLP4 2 OTTHUMG00000018237.1 +12305 chr10 HAVANA gene 50726947 50727969 1023.0 - 0 ENSG00000213667.3 processed_pseudogene PGGT1BP1 1 OTTHUMG00000018233.1 pseudo_consens +12306 chr10 HAVANA gene 50739318 50816495 6467.0 + 0 ENSG00000204147.10 protein_coding ASAH2B 2 OTTHUMG00000018239.2 +12307 chr10 HAVANA gene 50822692 50824525 636.0 - 0 ENSG00000229711.1 sense_intronic AL512366.1 2 OTTHUMG00000018238.1 overlapping_locus +12308 chr10 HAVANA gene 50799409 50885675 9603.0 - 0 ENSG00000148584.14 protein_coding A1CF 2 OTTHUMG00000018240.5 overlapping_locus +12309 chr10 HAVANA gene 50962993 50963358 366.0 - 0 ENSG00000236944.1 processed_pseudogene CCDC58P2 1 OTTHUMG00000018242.1 pseudo_consens +12310 chr10 HAVANA gene 50964270 50965220 951.0 + 0 ENSG00000261368.1 lincRNA AL731537.2 2 OTTHUMG00000176173.1 +12311 chr10 HAVANA gene 51062579 51068553 421.0 - 0 ENSG00000223502.1 antisense AL731537.1 2 OTTHUMG00000018241.4 +12312 chr10 HAVANA gene 51244894 51245806 446.0 - 0 ENSG00000231132.1 antisense AC022537.1 2 OTTHUMG00000018243.1 +12313 chr10 ENSEMBL gene 51299573 51299655 83.0 + 0 ENSG00000207813.1 miRNA MIR605 3 +12314 chr10 HAVANA gene 51302566 51306709 400.0 + 0 ENSG00000235279.1 sense_intronic AC069079.1 1 OTTHUMG00000018245.1 overlapping_locus +12315 chr10 HAVANA gene 51319826 51320660 835.0 + 0 ENSG00000213659.4 processed_pseudogene RSU1P3 1 OTTHUMG00000018244.2 pseudo_consens,overlapping_locus +12316 chr10 HAVANA gene 51695487 51699591 4105.0 - 0 ENSG00000177613.8 protein_coding CSTF2T 2 OTTHUMG00000018246.1 retrogene +12317 chr10 HAVANA gene 50990891 52298350 12831.0 + 0 ENSG00000185532.16 protein_coding PRKG1 1 OTTHUMG00000018248.12 ncRNA_host,overlapping_locus +12318 chr10 HAVANA gene 52230742 52314507 3252.0 - 0 ENSG00000236671.8 antisense PRKG1-AS1 2 OTTHUMG00000018251.3 +12319 chr10 HAVANA gene 52314296 52318042 2206.0 + 0 ENSG00000107984.9 protein_coding DKK1 2 OTTHUMG00000018247.1 +12320 chr10 HAVANA gene 52389112 52389488 377.0 - 0 ENSG00000213657.3 processed_pseudogene RPL31P44 1 OTTHUMG00000018249.1 pseudo_consens +12321 chr10 HAVANA gene 52411135 52413492 2266.0 + 0 ENSG00000227972.1 processed_pseudogene THAP12P3 1 OTTHUMG00000018250.1 pseudo_consens +12322 chr10 HAVANA gene 52450874 52755409 2007.0 - 0 ENSG00000231131.7 lincRNA LNCAROD 2 OTTHUMG00000193343.1 +12323 chr10 HAVANA gene 52765380 52771700 3569.0 - 0 ENSG00000165471.6 protein_coding MBL2 2 OTTHUMG00000150270.1 +12324 chr10 ENSEMBL gene 52852607 52852703 97.0 + 0 ENSG00000201196.1 misc_RNA RF00019 3 +12325 chr10 HAVANA gene 52946431 52955585 6744.0 - 0 ENSG00000285958.1 lincRNA AC073174.2 2 OTTHUMG00000193041.2 +12326 chr10 HAVANA gene 52973488 52975815 415.0 - 0 ENSG00000227121.1 lincRNA AC073174.1 2 OTTHUMG00000018255.1 +12327 chr10 HAVANA gene 53038285 53038544 260.0 + 0 ENSG00000231399.1 processed_pseudogene SNRPEP8 1 OTTHUMG00000018256.1 pseudo_consens +12328 chr10 HAVANA gene 53291072 53311065 597.0 - 0 ENSG00000226296.1 lincRNA AC036101.1 2 OTTHUMG00000018257.1 +12329 chr10 ENSEMBL gene 53458197 53458288 92.0 + 0 ENSG00000252161.1 rRNA_pseudogene RNA5SP318 3 +12330 chr10 HAVANA gene 53766400 53766614 215.0 + 0 ENSG00000233805.1 processed_pseudogene AL365496.1 1 OTTHUMG00000102139.1 pseudo_consens +12331 chr10 ENSEMBL gene 54452423 54452511 89.0 - 0 ENSG00000252252.1 snRNA RNU6-687P 3 +12332 chr10 HAVANA gene 54599678 54600683 1006.0 + 0 ENSG00000224697.1 processed_pseudogene NEFMP1 1 OTTHUMG00000018258.2 pseudo_consens,overlapping_locus +12333 chr10 ENSEMBL gene 54607874 54607957 84.0 - 0 ENSG00000221594.1 miRNA MIR548F1 3 +12334 chr10 HAVANA gene 54486230 54656051 2300.0 + 0 ENSG00000234173.1 antisense AL353784.1 2 OTTHUMG00000045026.1 overlapping_locus +12335 chr10 HAVANA gene 54864674 54869122 207.0 - 0 ENSG00000236958.1 sense_intronic AC051618.1 2 OTTHUMG00000144163.1 overlapping_locus +12336 chr10 HAVANA gene 55468327 55469222 316.0 + 0 ENSG00000223800.1 lincRNA AL355314.1 2 OTTHUMG00000144165.1 +12337 chr10 HAVANA gene 55506219 55513217 436.0 + 0 ENSG00000228048.1 lincRNA AL355314.2 1 OTTHUMG00000144164.1 +12338 chr10 HAVANA gene 55247755 55597233 439.0 - 0 ENSG00000236744.2 sense_intronic AC016822.1 2 OTTHUMG00000144166.2 overlapping_locus +12339 chr10 HAVANA gene 55599303 55600041 739.0 + 0 ENSG00000249860.3 protein_coding MTRNR2L5 2 OTTHUMG00000184965.1 +12340 chr10 HAVANA gene 53802771 55627942 15357.0 - 0 ENSG00000150275.18 protein_coding PCDH15 2 OTTHUMG00000018259.17 ncRNA_host,overlapping_locus +12341 chr10 HAVANA gene 55667341 55668350 1010.0 - 0 ENSG00000236993.2 processed_pseudogene GAPDHP21 1 OTTHUMG00000018260.2 pseudo_consens +12342 chr10 HAVANA gene 55746551 55746908 358.0 + 0 ENSG00000270541.1 processed_pseudogene AC069545.1 1 OTTHUMG00000184650.1 pseudo_consens +12343 chr10 HAVANA gene 56357228 56361275 2378.0 - 0 ENSG00000122952.16 protein_coding ZWINT 2 OTTHUMG00000018261.2 +12344 chr10 ENSEMBL gene 56595963 56596031 69.0 - 0 ENSG00000238707.1 snoRNA RF01299 3 +12345 chr10 ENSEMBL gene 57304479 57304559 81.0 - 0 ENSG00000264747.1 miRNA MIR3924 3 +12346 chr10 HAVANA gene 57513157 57513425 269.0 + 0 ENSG00000235810.1 processed_pseudogene AL731534.1 2 OTTHUMG00000018262.1 +12347 chr10 HAVANA gene 57955295 57957178 1884.0 + 0 ENSG00000223841.1 processed_pseudogene AC006484.1 1 OTTHUMG00000018263.1 pseudo_consens +12348 chr10 HAVANA gene 57982285 57982993 709.0 + 0 ENSG00000270192.1 processed_pseudogene MRPS35P3 2 OTTHUMG00000184649.1 +12349 chr10 HAVANA gene 58106423 58106879 457.0 - 0 ENSG00000232115.1 processed_pseudogene AC026884.1 2 OTTHUMG00000018264.1 +12350 chr10 HAVANA gene 58212541 58213036 496.0 - 0 ENSG00000180221.6 processed_pseudogene TPT1P10 1 OTTHUMG00000018265.1 pseudo_consens,overlapping_locus +12351 chr10 HAVANA gene 58191517 58267934 6133.0 - 0 ENSG00000151151.5 protein_coding IPMK 2 OTTHUMG00000018268.1 overlapping_locus +12352 chr10 HAVANA gene 58269058 58289586 2857.0 + 0 ENSG00000122873.11 protein_coding CISD1 2 OTTHUMG00000018266.2 +12353 chr10 HAVANA gene 58304553 58305621 328.0 + 0 ENSG00000228527.1 lincRNA AC016396.1 2 OTTHUMG00000018267.1 +12354 chr10 HAVANA gene 58325614 58327030 1417.0 - 0 ENSG00000261076.1 lincRNA AC016396.2 2 OTTHUMG00000176178.1 +12355 chr10 HAVANA gene 58334975 58370753 3486.0 + 0 ENSG00000072401.14 protein_coding UBE2D1 2 OTTHUMG00000018269.2 +12356 chr10 HAVANA gene 58385022 58399221 5606.0 + 0 ENSG00000108064.10 protein_coding TFAM 2 OTTHUMG00000018270.1 +12357 chr10 HAVANA gene 58715554 58716257 704.0 + 0 ENSG00000183055.5 processed_pseudogene FAM133CP 1 OTTHUMG00000018272.1 pseudo_consens,overlapping_locus +12358 chr10 HAVANA gene 58513140 58831437 6569.0 + 0 ENSG00000122870.11 protein_coding BICC1 2 OTTHUMG00000018271.3 overlapping_locus +12359 chr10 ENSEMBL gene 58869184 58869528 345.0 + 0 ENSG00000252076.1 misc_RNA RN7SKP196 3 +12360 chr10 HAVANA gene 58999626 59001543 477.0 + 0 ENSG00000237949.1 lincRNA LINC00844 1 OTTHUMG00000018273.1 +12361 chr10 HAVANA gene 59088701 59089039 339.0 - 0 ENSG00000226888.2 processed_pseudogene RPLP1P10 1 OTTHUMG00000018275.2 pseudo_consens +12362 chr10 HAVANA gene 59136625 59138182 1558.0 - 0 ENSG00000226557.1 processed_pseudogene TRAF6P1 1 OTTHUMG00000018274.1 pseudo_consens +12363 chr10 HAVANA gene 59176590 59247774 4093.0 + 0 ENSG00000165443.11 protein_coding PHYHIPL 2 OTTHUMG00000018276.2 +12364 chr10 HAVANA gene 59282147 59282835 336.0 + 0 ENSG00000236556.1 antisense AC025038.1 2 OTTHUMG00000018278.1 +12365 chr10 HAVANA gene 59246129 59363181 6753.0 - 0 ENSG00000148541.12 protein_coding FAM13C 1 OTTHUMG00000018277.12 +12366 chr10 HAVANA gene 59551404 59551878 475.0 - 0 ENSG00000235469.1 processed_pseudogene MRPL50P4 1 OTTHUMG00000018281.1 pseudo_consens +12367 chr10 HAVANA gene 59578467 59650345 3389.0 + 0 ENSG00000235140.2 lincRNA AC026391.1 2 OTTHUMG00000018280.2 +12368 chr10 HAVANA gene 59650761 59736002 4429.0 - 0 ENSG00000165449.11 protein_coding SLC16A9 2 OTTHUMG00000018283.4 +12369 chr10 HAVANA gene 59736692 59756041 2941.0 - 0 ENSG00000227877.6 protein_coding MRLN 2 OTTHUMG00000018282.8 +12370 chr10 HAVANA gene 59788763 59906656 7345.0 - 0 ENSG00000108091.10 protein_coding CCDC6 2 OTTHUMG00000018284.2 +12371 chr10 HAVANA gene 59955430 59960913 4602.0 - 0 ENSG00000235931.2 lincRNA LINC01553 2 OTTHUMG00000018285.2 +12372 chr10 HAVANA gene 60050668 60060743 1608.0 + 0 ENSG00000232682.2 antisense AL592430.1 1 OTTHUMG00000018286.2 +12373 chr10 ENSEMBL gene 60081741 60081854 114.0 + 0 ENSG00000202190.1 misc_RNA RF00019 3 +12374 chr10 HAVANA gene 60139912 60140877 486.0 + 0 ENSG00000282121.1 antisense AL592430.2 2 OTTHUMG00000191407.1 +12375 chr10 HAVANA gene 60684505 60685209 705.0 + 0 ENSG00000122872.8 processed_pseudogene ARL4AP1 1 OTTHUMG00000018289.2 pseudo_consens +12376 chr10 HAVANA gene 60026298 60733490 25614.0 - 0 ENSG00000151150.21 protein_coding ANK3 1 OTTHUMG00000018288.15 +12377 chr10 HAVANA gene 60734342 60741828 434.0 + 0 ENSG00000254271.1 lincRNA AC022390.1 2 OTTHUMG00000164644.1 +12378 chr10 HAVANA gene 60778331 60794852 3931.0 + 0 ENSG00000170312.15 protein_coding CDK1 2 OTTHUMG00000018290.5 +12379 chr10 ENSEMBL gene 60912765 60912927 163.0 - 0 ENSG00000223107.1 snRNA RNU2-72P 3 +12380 chr10 HAVANA gene 60869438 61001440 4841.0 - 0 ENSG00000072422.16 protein_coding RHOBTB1 2 OTTHUMG00000018292.1 ncRNA_host +12381 chr10 HAVANA gene 61016275 61026420 696.0 + 0 ENSG00000227244.2 lincRNA LINC00845 1 OTTHUMG00000018291.1 +12382 chr10 HAVANA gene 61406643 61453450 6907.0 - 0 ENSG00000196932.11 protein_coding TMEM26 2 OTTHUMG00000018293.3 +12383 chr10 HAVANA gene 61452639 61481956 863.0 + 0 ENSG00000237233.2 antisense TMEM26-AS1 1 OTTHUMG00000018294.2 +12384 chr10 HAVANA gene 61684892 61685388 497.0 - 0 ENSG00000272592.1 antisense AL451049.1 2 OTTHUMG00000186278.1 +12385 chr10 HAVANA gene 61662961 61766766 1685.0 + 0 ENSG00000183346.7 protein_coding CABCOCO1 2 OTTHUMG00000018295.6 +12386 chr10 HAVANA gene 61781745 61821246 510.0 - 0 ENSG00000233643.2 lincRNA AC022398.1 2 OTTHUMG00000018296.2 +12387 chr10 HAVANA gene 61901300 62096944 8164.0 + 0 ENSG00000150347.15 protein_coding ARID5B 2 OTTHUMG00000018298.2 +12388 chr10 HAVANA gene 62183035 62268707 9548.0 - 0 ENSG00000182010.10 protein_coding RTKN2 2 OTTHUMG00000018299.5 +12389 chr10 HAVANA gene 62289521 62304033 706.0 + 0 ENSG00000234756.1 lincRNA AC024597.1 2 OTTHUMG00000018301.1 +12390 chr10 ENSEMBL gene 62350006 62350297 292.0 + 0 ENSG00000240940.3 misc_RNA RN7SL591P 3 +12391 chr10 HAVANA gene 62374192 62670301 5368.0 + 0 ENSG00000138311.16 protein_coding ZNF365 1 OTTHUMG00000192644.1 overlapping_locus +12392 chr10 HAVANA gene 62520448 62672011 3965.0 + 0 ENSG00000285551.1 protein_coding AC067752.1 2 OTTHUMG00000018302.4 overlapping_locus +12393 chr10 HAVANA gene 62374192 62672011 9073.0 + 0 ENSG00000285837.1 processed_transcript AC024598.1 2 OTTHUMG00000192645.1 overlapping_locus +12394 chr10 HAVANA gene 62741208 62741385 178.0 - 0 ENSG00000234489.1 processed_pseudogene ALDH7A1P4 1 OTTHUMG00000018305.1 pseudo_consens +12395 chr10 HAVANA gene 62682652 62805887 1252.0 - 0 ENSG00000238280.2 antisense AC067751.1 2 OTTHUMG00000018307.2 +12396 chr10 HAVANA gene 62804857 62808483 3627.0 + 0 ENSG00000181915.4 protein_coding ADO 2 OTTHUMG00000018306.2 +12397 chr10 HAVANA gene 62811996 62919900 3689.0 - 0 ENSG00000122877.15 protein_coding EGR2 2 OTTHUMG00000018308.6 +12398 chr10 ENSEMBL gene 63110139 63110246 108.0 + 0 ENSG00000199446.1 snRNA RNU6-543P 3 +12399 chr10 HAVANA gene 63123938 63125537 505.0 - 0 ENSG00000224301.1 antisense AL590502.1 2 OTTHUMG00000018310.1 +12400 chr10 HAVANA gene 63133247 63155031 1901.0 + 0 ENSG00000148572.15 protein_coding NRBF2 2 OTTHUMG00000018309.2 +12401 chr10 HAVANA gene 63222155 63223045 891.0 + 0 ENSG00000234369.1 processed_pseudogene TATDN1P1 1 OTTHUMG00000018312.1 pseudo_consens +12402 chr10 HAVANA gene 63358745 63359104 360.0 + 0 ENSG00000270421.1 processed_pseudogene AC022022.2 1 OTTHUMG00000184648.1 pseudo_consens +12403 chr10 ENSEMBL gene 63372957 63373048 92.0 - 0 ENSG00000221063.3 miRNA MIR1296 3 +12404 chr10 HAVANA gene 63427297 63427939 643.0 + 0 ENSG00000235816.3 processed_pseudogene PRELID1P3 1 OTTHUMG00000018316.1 pseudo_consens +12405 chr10 HAVANA gene 63465229 63466563 1335.0 + 0 ENSG00000272767.1 antisense JMJD1C-AS1 2 OTTHUMG00000186280.1 +12406 chr10 HAVANA gene 63489461 63489638 178.0 + 0 ENSG00000224412.1 processed_pseudogene AC022022.1 1 OTTHUMG00000018317.1 pseudo_consens +12407 chr10 HAVANA gene 63167221 63521850 11066.0 - 0 ENSG00000171988.18 protein_coding JMJD1C 1 OTTHUMG00000018311.6 ncRNA_host +12408 chr10 HAVANA gene 63521363 63625123 5248.0 + 0 ENSG00000165476.13 protein_coding REEP3 2 OTTHUMG00000018318.5 +12409 chr10 HAVANA gene 63634317 63634827 511.0 - 0 ENSG00000232075.1 processed_pseudogene MRPL35P2 1 OTTHUMG00000018319.1 pseudo_consens +12410 chr10 HAVANA gene 63658074 63658521 448.0 + 0 ENSG00000270352.1 processed_pseudogene AC022387.2 1 OTTHUMG00000184647.1 pseudo_consens +12411 chr10 HAVANA gene 63902451 63903245 795.0 - 0 ENSG00000213609.3 processed_pseudogene RPL7AP50 1 OTTHUMG00000018321.1 pseudo_consens +12412 chr10 HAVANA gene 63664664 63990568 794.0 + 0 ENSG00000228566.1 lincRNA AC022387.1 2 OTTHUMG00000018320.1 +12413 chr10 HAVANA gene 64036345 64037280 622.0 - 0 ENSG00000226426.1 lincRNA AC012558.1 1 OTTHUMG00000018322.1 +12414 chr10 HAVANA gene 64168959 64170850 1892.0 - 0 ENSG00000235489.4 processed_pseudogene DBF4P1 1 OTTHUMG00000018323.1 pseudo_consens +12415 chr10 HAVANA gene 64620374 64620922 549.0 - 0 ENSG00000233900.1 processed_pseudogene RPL17P35 1 OTTHUMG00000018324.1 pseudo_consens +12416 chr10 HAVANA gene 64762883 64763172 290.0 - 0 ENSG00000270648.1 processed_pseudogene CYP2C61P 1 OTTHUMG00000184693.1 pseudo_consens +12417 chr10 HAVANA gene 64825572 64826579 1008.0 + 0 ENSG00000216740.2 processed_pseudogene ANXA2P3 1 OTTHUMG00000018326.1 pseudo_consens +12418 chr10 HAVANA gene 64901136 64924518 2572.0 - 0 ENSG00000224714.2 lincRNA AC024600.1 1 OTTHUMG00000018325.2 +12419 chr10 HAVANA gene 65054460 65055003 544.0 + 0 ENSG00000270754.1 processed_pseudogene NEK4P3 1 OTTHUMG00000184645.1 pseudo_consens +12420 chr10 HAVANA gene 65123667 65141185 1209.0 + 0 ENSG00000282906.1 lincRNA AL513321.2 2 OTTHUMG00000191609.1 +12421 chr10 HAVANA gene 65169438 65169869 432.0 - 0 ENSG00000227173.1 processed_pseudogene MYL6P3 1 OTTHUMG00000018327.1 pseudo_consens +12422 chr10 HAVANA gene 65248032 65248792 761.0 - 0 ENSG00000233724.1 processed_pseudogene AL513321.1 1 OTTHUMG00000018328.1 pseudo_consens +12423 chr10 HAVANA gene 65271319 65315080 743.0 + 0 ENSG00000235356.2 lincRNA AL592466.1 2 OTTHUMG00000018329.3 +12424 chr10 HAVANA gene 65570338 65768835 10045.0 + 0 ENSG00000228065.10 lincRNA LINC01515 1 OTTHUMG00000018330.10 +12425 chr10 HAVANA gene 66079243 66118326 559.0 + 0 ENSG00000273360.1 antisense AC022017.1 2 OTTHUMG00000186284.1 +12426 chr10 HAVANA gene 66837457 66837704 248.0 + 0 ENSG00000277056.1 unprocessed_pseudogene AL607023.1 2 OTTHUMG00000187835.1 +12427 chr10 HAVANA gene 67052609 67055028 505.0 + 0 ENSG00000225299.1 antisense AL139240.1 1 OTTHUMG00000018331.1 overlapping_locus +12428 chr10 HAVANA gene 66926006 67099830 4650.0 + 0 ENSG00000198739.10 protein_coding LRRTM3 2 OTTHUMG00000018332.2 overlapping_locus +12429 chr10 HAVANA gene 67334123 67334882 760.0 + 0 ENSG00000226448.1 processed_pseudogene RPL7AP51 1 OTTHUMG00000018333.1 pseudo_consens +12430 chr10 ENSEMBL gene 67403351 67403410 60.0 - 0 ENSG00000276866.1 miRNA MIR7151 3 +12431 chr10 HAVANA gene 65912518 67696169 11136.0 - 0 ENSG00000183230.16 protein_coding CTNNA3 2 OTTHUMG00000018334.7 ncRNA_host +12432 chr10 HAVANA gene 67750284 67751225 942.0 + 0 ENSG00000213606.3 processed_pseudogene AKR1B10P1 1 OTTHUMG00000018335.1 pseudo_consens +12433 chr10 HAVANA gene 67793770 67794245 476.0 + 0 ENSG00000225922.1 processed_pseudogene RPL21P92 1 OTTHUMG00000018338.1 pseudo_consens +12434 chr10 ENSEMBL gene 67808502 67808608 107.0 + 0 ENSG00000212520.1 snRNA RNU6-1250P 3 +12435 chr10 ENSEMBL gene 67825310 67825600 291.0 - 0 ENSG00000239942.2 misc_RNA RN7SL394P 3 +12436 chr10 HAVANA gene 67833763 67834081 319.0 + 0 ENSG00000237141.1 processed_pseudogene DNAJC19P1 1 OTTHUMG00000018336.1 pseudo_consens +12437 chr10 HAVANA gene 67796665 67838166 2121.0 - 0 ENSG00000108176.14 protein_coding DNAJC12 2 OTTHUMG00000018339.4 ncRNA_host +12438 chr10 HAVANA gene 67849525 67850746 1222.0 + 0 ENSG00000272892.1 lincRNA AL133551.1 2 OTTHUMG00000186404.1 +12439 chr10 ENSEMBL gene 67858818 67858871 54.0 - 0 ENSG00000252113.2 snRNA RNU6-523P 3 +12440 chr10 HAVANA gene 67874332 67874911 580.0 + 0 ENSG00000219932.6 processed_pseudogene RPL12P8 1 OTTHUMG00000018337.3 pseudo_consens +12441 chr10 HAVANA gene 67884669 67918390 4551.0 + 0 ENSG00000096717.11 protein_coding SIRT1 2 OTTHUMG00000018340.2 +12442 chr10 HAVANA gene 67960702 67961464 763.0 - 0 ENSG00000226318.1 processed_pseudogene RPS3AP38 1 OTTHUMG00000018341.2 pseudo_consens,overlapping_locus +12443 chr10 ENSEMBL gene 68007718 68008017 300.0 - 0 ENSG00000266467.2 misc_RNA RN7SL220P 3 +12444 chr10 HAVANA gene 68010205 68010862 658.0 - 0 ENSG00000236375.3 processed_pseudogene POU5F1P5 1 OTTHUMG00000018342.3 pseudo_consens,overlapping_locus +12445 chr10 HAVANA gene 67921899 68075348 15847.0 - 0 ENSG00000148634.15 protein_coding HERC4 1 OTTHUMG00000018343.7 ncRNA_host,overlapping_locus +12446 chr10 ENSEMBL gene 68158079 68158408 330.0 + 0 ENSG00000222371.1 misc_RNA RN7SKP202 3 +12447 chr10 HAVANA gene 68106117 68212017 7060.0 + 0 ENSG00000138347.15 protein_coding MYPN 2 OTTHUMG00000018344.1 ncRNA_host +12448 chr10 HAVANA gene 68230624 68232103 1480.0 - 0 ENSG00000179774.8 protein_coding ATOH7 2 OTTHUMG00000018346.1 +12449 chr10 HAVANA gene 68233251 68242379 561.0 - 0 ENSG00000233590.1 lincRNA AC016395.1 2 OTTHUMG00000018345.1 +12450 chr10 HAVANA gene 68260557 68261499 943.0 + 0 ENSG00000234102.1 processed_pseudogene KRT19P4 1 OTTHUMG00000018347.1 pseudo_consens +12451 chr10 HAVANA gene 68282660 68333049 5172.0 - 0 ENSG00000108187.15 protein_coding PBLD 2 OTTHUMG00000073949.4 +12452 chr10 HAVANA gene 68331174 68343191 5373.0 + 0 ENSG00000096746.17 protein_coding HNRNPH3 2 OTTHUMG00000018349.2 +12453 chr10 HAVANA gene 68341107 68407294 8137.0 - 0 ENSG00000204130.13 protein_coding RUFY2 2 OTTHUMG00000018353.7 +12454 chr10 HAVANA gene 68424560 68424997 438.0 + 0 ENSG00000234806.1 processed_pseudogene RPL26P29 1 OTTHUMG00000018351.1 pseudo_consens +12455 chr10 ENSEMBL gene 68461407 68461525 119.0 + 0 ENSG00000199638.1 rRNA_pseudogene RNA5SP319 3 +12456 chr10 HAVANA gene 68414064 68472121 4867.0 - 0 ENSG00000138346.14 protein_coding DNA2 2 OTTHUMG00000018352.5 +12457 chr10 HAVANA gene 68499532 68499968 437.0 + 0 ENSG00000226493.1 processed_pseudogene RPL26P27 1 OTTHUMG00000018355.1 pseudo_consens +12458 chr10 ENSEMBL gene 68503152 68503259 108.0 + 0 ENSG00000207438.1 misc_RNA RF00019 3 +12459 chr10 HAVANA gene 68477999 68527474 7815.0 - 0 ENSG00000122912.14 protein_coding SLC25A16 2 OTTHUMG00000018354.2 +12460 chr10 HAVANA gene 68544489 68544833 345.0 - 0 ENSG00000214881.4 processed_pseudogene TMEM14DP 2 OTTHUMG00000018356.1 +12461 chr10 HAVANA gene 68632371 68632727 357.0 + 0 ENSG00000213025.2 processed_pseudogene COX20P1 2 OTTHUMG00000018360.1 overlapping_locus +12462 chr10 HAVANA gene 68674356 68675100 745.0 + 0 ENSG00000227583.1 processed_pseudogene RPS3AP37 1 OTTHUMG00000018357.1 pseudo_consens,overlapping_locus +12463 chr10 HAVANA gene 68560656 68694482 9288.0 + 0 ENSG00000138336.8 protein_coding TET1 2 OTTHUMG00000018359.1 overlapping_locus +12464 chr10 HAVANA gene 68698500 68700794 2295.0 + 0 ENSG00000260400.1 sense_overlapping AL513534.1 2 OTTHUMG00000176181.1 +12465 chr10 HAVANA gene 68717311 68717795 250.0 - 0 ENSG00000270494.1 processed_pseudogene AL513534.2 1 OTTHUMG00000184695.1 pseudo_consens +12466 chr10 ENSEMBL gene 68735720 68735823 104.0 - 0 ENSG00000195401.2 misc_RNA RF00019 3 +12467 chr10 ENSEMBL gene 68755172 68755238 67.0 + 0 ENSG00000283551.1 snoRNA SNORD98 3 +12468 chr10 ENSEMBL gene 68759318 68759414 97.0 + 0 ENSG00000221184.1 miRNA MIR1254-1 3 +12469 chr10 HAVANA gene 68721012 68792377 6059.0 + 0 ENSG00000060339.13 protein_coding CCAR1 1 OTTHUMG00000018361.5 ncRNA_host +12470 chr10 ENSEMBL gene 68846805 68846911 107.0 + 0 ENSG00000200218.1 snRNA RNU6-697P 3 +12471 chr10 HAVANA gene 68827541 68895432 3568.0 + 0 ENSG00000165730.15 protein_coding STOX1 2 OTTHUMG00000018367.8 ncRNA_host +12472 chr10 HAVANA gene 68896920 68900768 1780.0 + 0 ENSG00000285871.1 lincRNA AL359844.1 2 OTTHUMG00000193147.2 +12473 chr10 ENSEMBL gene 68911653 68911759 107.0 - 0 ENSG00000206855.1 snRNA RNU6-571P 3 +12474 chr10 HAVANA gene 68901278 68946847 2692.0 + 0 ENSG00000107625.12 protein_coding DDX50 2 OTTHUMG00000018362.2 +12475 chr10 HAVANA gene 68956128 68985073 5020.0 + 0 ENSG00000165732.12 protein_coding DDX21 2 OTTHUMG00000018366.1 +12476 chr10 HAVANA gene 68991137 68991707 571.0 + 0 ENSG00000214875.2 processed_pseudogene MED28P1 1 OTTHUMG00000018364.1 pseudo_consens,overlapping_locus +12477 chr10 HAVANA gene 69022778 69023866 1089.0 + 0 ENSG00000229001.1 processed_pseudogene ACTBP14 1 OTTHUMG00000018365.1 pseudo_consens +12478 chr10 HAVANA gene 68988721 69043544 5454.0 + 0 ENSG00000198954.7 protein_coding KIF1BP 2 OTTHUMG00000018363.6 overlapping_locus +12479 chr10 ENSEMBL gene 69098496 69098794 299.0 + 0 ENSG00000274008.1 misc_RNA RF00017 3 +12480 chr10 HAVANA gene 69088106 69104811 1220.0 + 0 ENSG00000122862.4 protein_coding SRGN 2 OTTHUMG00000018369.1 ncRNA_host +12481 chr10 HAVANA gene 69161530 69161906 377.0 - 0 ENSG00000233163.1 processed_pseudogene RPS12P17 1 OTTHUMG00000018368.1 pseudo_consens +12482 chr10 HAVANA gene 69123512 69172861 3565.0 + 0 ENSG00000122958.14 protein_coding VPS26A 2 OTTHUMG00000018376.2 +12483 chr10 HAVANA gene 69180232 69209099 4283.0 + 0 ENSG00000156502.13 protein_coding SUPV3L1 2 OTTHUMG00000018375.3 +12484 chr10 HAVANA gene 69215333 69232490 1933.0 - 0 ENSG00000229261.1 antisense AL596223.1 2 OTTHUMG00000018372.1 +12485 chr10 HAVANA gene 69220303 69267559 4259.0 + 0 ENSG00000156510.12 protein_coding HKDC1 2 OTTHUMG00000018371.2 +12486 chr10 HAVANA gene 69265342 69268148 434.0 - 0 ENSG00000231748.1 antisense AL596223.2 2 OTTHUMG00000018373.1 +12487 chr10 HAVANA gene 69300432 69300817 386.0 - 0 ENSG00000229197.1 processed_pseudogene RPS15AP28 1 OTTHUMG00000018374.1 pseudo_consens +12488 chr10 HAVANA gene 69269984 69401884 6296.0 + 0 ENSG00000156515.23 protein_coding HK1 2 OTTHUMG00000018380.16 +12489 chr10 HAVANA gene 69403903 69416867 2871.0 - 0 ENSG00000075073.14 protein_coding TACR2 2 OTTHUMG00000018377.1 +12490 chr10 HAVANA gene 69432972 69433371 400.0 - 0 ENSG00000232734.1 processed_pseudogene ATP5MC1P7 1 OTTHUMG00000018379.1 pseudo_consens +12491 chr10 HAVANA gene 69451473 69507669 2646.0 + 0 ENSG00000099282.9 protein_coding TSPAN15 1 OTTHUMG00000018381.3 +12492 chr10 HAVANA gene 69523311 69523650 340.0 - 0 ENSG00000233197.1 processed_pseudogene TMEM256P1 1 OTTHUMG00000018382.1 pseudo_consens +12493 chr10 HAVANA gene 69571698 69573238 1376.0 - 0 ENSG00000122859.4 protein_coding NEUROG3 2 OTTHUMG00000018391.1 +12494 chr10 HAVANA gene 69575807 69577154 503.0 + 0 ENSG00000236154.1 antisense AL450311.2 1 OTTHUMG00000018384.1 +12495 chr10 HAVANA gene 69589880 69590355 476.0 - 0 ENSG00000230755.1 processed_pseudogene MTATP6P23 2 OTTHUMG00000018390.1 +12496 chr10 HAVANA gene 69590583 69591262 680.0 - 0 ENSG00000235803.1 processed_pseudogene MTCO2P23 2 OTTHUMG00000018389.1 +12497 chr10 HAVANA gene 69591406 69592931 1526.0 - 0 ENSG00000235524.1 processed_pseudogene MTCO1P23 2 OTTHUMG00000018387.1 +12498 chr10 HAVANA gene 69594041 69594932 892.0 - 0 ENSG00000231152.1 processed_pseudogene MTND2P15 2 OTTHUMG00000018386.1 +12499 chr10 HAVANA gene 69595487 69596436 950.0 - 0 ENSG00000226794.1 processed_pseudogene MTND1P20 2 OTTHUMG00000018385.1 +12500 chr10 HAVANA gene 69630251 69633599 1349.0 + 0 ENSG00000171224.8 protein_coding FAM241B 2 OTTHUMG00000018383.3 +12501 chr10 HAVANA gene 69684899 69692452 576.0 + 0 ENSG00000235645.2 lincRNA AL450311.1 1 OTTHUMG00000018393.2 +12502 chr10 HAVANA gene 69778962 69779838 877.0 + 0 ENSG00000230469.1 processed_pseudogene RPL5P26 1 OTTHUMG00000018392.1 pseudo_consens +12503 chr10 HAVANA gene 69801867 69964275 5888.0 + 0 ENSG00000197467.14 protein_coding COL13A1 1 OTTHUMG00000018394.5 +12504 chr10 HAVANA gene 69994626 70007836 524.0 - 0 ENSG00000224222.1 lincRNA AC024601.1 1 OTTHUMG00000018395.1 +12505 chr10 HAVANA gene 70052796 70112280 1980.0 + 0 ENSG00000099284.13 protein_coding H2AFY2 1 OTTHUMG00000018396.3 +12506 chr10 HAVANA gene 70098223 70132934 5135.0 - 0 ENSG00000042286.14 protein_coding AIFM2 2 OTTHUMG00000018398.2 +12507 chr10 HAVANA gene 70137981 70146676 4597.0 - 0 ENSG00000156521.13 protein_coding TYSND1 2 OTTHUMG00000018397.1 +12508 chr10 HAVANA gene 70163685 70164124 440.0 + 0 ENSG00000229097.1 processed_pseudogene CALM2P2 1 OTTHUMG00000018401.1 pseudo_consens +12509 chr10 HAVANA gene 70147289 70170523 6914.0 - 0 ENSG00000079332.14 protein_coding SAR1A 2 OTTHUMG00000018400.4 +12510 chr10 HAVANA gene 70198988 70199239 252.0 - 0 ENSG00000232142.1 processed_pseudogene RPS25P9 1 OTTHUMG00000018403.1 pseudo_consens +12511 chr10 HAVANA gene 70202830 70233911 5171.0 - 0 ENSG00000180817.11 protein_coding PPA1 2 OTTHUMG00000018399.2 +12512 chr10 HAVANA gene 70247329 70283676 8921.0 - 0 ENSG00000148734.7 protein_coding NPFFR1 2 OTTHUMG00000018404.2 +12513 chr10 HAVANA gene 70298970 70382650 3625.0 - 0 ENSG00000172731.13 protein_coding LRRC20 2 OTTHUMG00000018407.3 +12514 chr10 HAVANA gene 70389426 70390626 1201.0 + 0 ENSG00000224725.3 processed_pseudogene CEP57L1P1 1 OTTHUMG00000018406.1 pseudo_consens +12515 chr10 HAVANA gene 70404379 70428618 7257.0 + 0 ENSG00000148730.6 protein_coding EIF4EBP2 2 OTTHUMG00000018409.1 +12516 chr10 HAVANA gene 70434829 70436556 1728.0 + 0 ENSG00000280401.1 TEC AC022532.1 2 OTTHUMG00000187419.1 +12517 chr10 HAVANA gene 70432315 70447951 1693.0 - 0 ENSG00000156574.9 protein_coding NODAL 2 OTTHUMG00000018408.1 +12518 chr10 HAVANA gene 70485336 70486325 668.0 - 0 ENSG00000230661.1 processed_pseudogene YY1P1 2 OTTHUMG00000018405.1 +12519 chr10 HAVANA gene 70478821 70568449 4555.0 + 0 ENSG00000107719.8 protein_coding PALD1 2 OTTHUMG00000018411.2 +12520 chr10 HAVANA gene 70597348 70602775 2534.0 - 0 ENSG00000180644.7 protein_coding PRF1 2 OTTHUMG00000018412.3 +12521 chr10 HAVANA gene 70672803 70762441 5269.0 + 0 ENSG00000138316.10 protein_coding ADAMTS14 2 OTTHUMG00000018414.1 +12522 chr10 HAVANA gene 70771239 70785401 1717.0 - 0 ENSG00000166220.12 protein_coding TBATA 2 OTTHUMG00000018413.1 +12523 chr10 HAVANA gene 70794230 70794523 294.0 - 0 ENSG00000231366.1 processed_pseudogene RPS26P40 1 OTTHUMG00000018415.1 pseudo_consens +12524 chr10 HAVANA gene 70815961 70881173 7486.0 + 0 ENSG00000166224.16 protein_coding SGPL1 2 OTTHUMG00000018421.2 +12525 chr10 HAVANA gene 70882280 70888784 1614.0 - 0 ENSG00000166228.8 protein_coding PCBD1 2 OTTHUMG00000018417.1 +12526 chr10 HAVANA gene 70929925 70932057 1963.0 + 0 ENSG00000271409.1 lincRNA AC073176.2 2 OTTHUMG00000018418.1 +12527 chr10 HAVANA gene 70939053 70955641 895.0 + 0 ENSG00000259267.2 lincRNA AC073176.1 2 OTTHUMG00000172020.2 +12528 chr10 HAVANA gene 70927055 71077810 2199.0 + 0 ENSG00000285300.1 lincRNA AC073176.3 2 OTTHUMG00000192570.1 +12529 chr10 HAVANA gene 71217224 71218228 707.0 - 0 ENSG00000237512.6 antisense UNC5B-AS1 2 OTTHUMG00000018423.2 +12530 chr10 HAVANA gene 71212570 71302864 6841.0 + 0 ENSG00000107731.12 protein_coding UNC5B 2 OTTHUMG00000018422.1 +12531 chr10 HAVANA gene 71364243 71366374 2132.0 + 0 ENSG00000279406.1 TEC AL359183.1 2 OTTHUMG00000176183.1 +12532 chr10 HAVANA gene 71319258 71381423 5439.0 + 0 ENSG00000198246.8 protein_coding SLC29A3 2 OTTHUMG00000018424.5 +12533 chr10 HAVANA gene 71508153 71511873 378.0 - 0 ENSG00000223817.1 antisense CDH23-AS1 2 OTTHUMG00000018425.1 +12534 chr10 HAVANA gene 71711702 71737824 4933.0 - 0 ENSG00000214688.5 protein_coding C10orf105 2 OTTHUMG00000018427.3 +12535 chr10 HAVANA gene 71747559 71773498 5128.0 - 0 ENSG00000107738.19 protein_coding VSIR 2 OTTHUMG00000018426.4 +12536 chr10 ENSEMBL gene 71790747 71790800 54.0 + 0 ENSG00000274824.1 miRNA MIR7152 3 +12537 chr10 HAVANA gene 71396934 71815947 18059.0 + 0 ENSG00000107736.20 protein_coding CDH23 1 OTTHUMG00000019347.17 ncRNA_host +12538 chr10 ENSEMBL gene 71844735 71844794 60.0 - 0 ENSG00000238446.1 snRNA RNU7-38P 3 +12539 chr10 HAVANA gene 71816298 71851375 3239.0 - 0 ENSG00000197746.13 protein_coding PSAP 2 OTTHUMG00000018429.5 ncRNA_host +12540 chr10 HAVANA gene 71878356 71879107 525.0 + 0 ENSG00000230526.1 lincRNA AC073370.1 1 OTTHUMG00000018428.1 +12541 chr10 HAVANA gene 71964365 72013564 6970.0 + 0 ENSG00000122863.5 protein_coding CHST3 2 OTTHUMG00000018431.1 +12542 chr10 HAVANA gene 72053294 72054037 744.0 - 0 ENSG00000272988.1 lincRNA AC022392.1 2 OTTHUMG00000186410.1 +12543 chr10 HAVANA gene 72059035 72089032 6569.0 - 0 ENSG00000107742.12 protein_coding SPOCK2 2 OTTHUMG00000018430.3 +12544 chr10 ENSEMBL gene 72180858 72180989 132.0 + 0 ENSG00000200294.1 snoRNA RF00340 3 +12545 chr10 HAVANA gene 72189941 72190576 636.0 + 0 ENSG00000226701.1 processed_pseudogene RPL15P14 1 OTTHUMG00000018432.1 pseudo_consens +12546 chr10 HAVANA gene 72096032 72217134 5586.0 - 0 ENSG00000138303.17 protein_coding ASCC1 1 OTTHUMG00000018434.4 +12547 chr10 ENSEMBL gene 72220752 72220852 101.0 + 0 ENSG00000200170.1 misc_RNA RF00019 3 +12548 chr10 HAVANA gene 72216000 72235860 4324.0 + 0 ENSG00000166295.8 protein_coding ANAPC16 2 OTTHUMG00000018433.3 ncRNA_host +12549 chr10 HAVANA gene 72274915 72275980 847.0 - 0 ENSG00000269926.1 antisense DDIT4-AS1 2 OTTHUMG00000018435.2 +12550 chr10 HAVANA gene 72273920 72276036 2058.0 + 0 ENSG00000168209.4 protein_coding DDIT4 2 OTTHUMG00000183961.2 +12551 chr10 HAVANA gene 72332830 72355230 5649.0 - 0 ENSG00000148719.14 protein_coding DNAJB12 2 OTTHUMG00000018436.3 +12552 chr10 ENSEMBL gene 72391964 72392069 106.0 + 0 ENSG00000202513.1 snRNA RNU6-805P 3 +12553 chr10 HAVANA gene 72467749 72473304 479.0 - 0 ENSG00000282915.1 sense_intronic AC091769.2 2 OTTHUMG00000191482.1 +12554 chr10 HAVANA gene 72483245 72483812 568.0 + 0 ENSG00000276531.1 unprocessed_pseudogene AC091769.1 2 OTTHUMG00000187839.1 +12555 chr10 HAVANA gene 72501746 72502956 162.0 + 0 ENSG00000226163.1 antisense AL513185.1 2 OTTHUMG00000018439.1 +12556 chr10 HAVANA gene 72560264 72560456 193.0 + 0 ENSG00000230609.1 processed_pseudogene AL513185.2 1 OTTHUMG00000018440.1 pseudo_consens +12557 chr10 ENSEMBL gene 72582803 72583086 284.0 + 0 ENSG00000272536.2 misc_RNA RN7SL840P 3 +12558 chr10 HAVANA gene 72367327 72626191 3846.0 - 0 ENSG00000107745.18 protein_coding MICU1 2 OTTHUMG00000018437.12 +12559 chr10 HAVANA gene 72636497 72636765 269.0 - 0 ENSG00000231471.1 processed_pseudogene HMGN2P34 2 OTTHUMG00000018438.1 +12560 chr10 HAVANA gene 72643011 72644650 1300.0 + 0 ENSG00000238215.1 processed_pseudogene AL513185.3 2 OTTHUMG00000018441.1 +12561 chr10 ENSEMBL gene 72654165 72654276 112.0 - 0 ENSG00000201881.1 misc_RNA RF00019 3 +12562 chr10 ENSEMBL gene 72721029 72721100 72.0 + 0 ENSG00000266719.1 miRNA MIR4676 3 +12563 chr10 HAVANA gene 72730557 72731175 619.0 + 0 ENSG00000280166.1 TEC AC016542.3 2 OTTHUMG00000184253.1 overlapping_locus +12564 chr10 HAVANA gene 72756398 72757016 619.0 + 0 ENSG00000279502.1 TEC AC016542.2 2 OTTHUMG00000184254.1 overlapping_locus +12565 chr10 HAVANA gene 72766560 72767052 493.0 + 0 ENSG00000272627.1 sense_intronic AC016542.1 2 OTTHUMG00000186414.1 overlapping_locus +12566 chr10 HAVANA gene 72692131 72887694 4533.0 + 0 ENSG00000156026.14 protein_coding MCU 2 OTTHUMG00000018443.3 ncRNA_host,overlapping_locus +12567 chr10 HAVANA gene 72917641 72918534 894.0 - 0 ENSG00000215086.2 processed_pseudogene NPM1P24 1 OTTHUMG00000018445.1 pseudo_consens +12568 chr10 HAVANA gene 72893581 72933033 2365.0 + 0 ENSG00000138315.12 protein_coding OIT3 2 OTTHUMG00000018444.1 +12569 chr10 HAVANA gene 72935170 72954778 1128.0 - 0 ENSG00000138308.5 protein_coding PLA2G12B 2 OTTHUMG00000018446.2 +12570 chr10 HAVANA gene 73005833 73006595 546.0 - 0 ENSG00000213700.3 processed_pseudogene RPL17P50 1 OTTHUMG00000018448.1 pseudo_consens +12571 chr10 HAVANA gene 73065126 73065467 214.0 + 0 ENSG00000232646.1 processed_pseudogene AL731563.1 2 OTTHUMG00000018450.1 +12572 chr10 HAVANA gene 73071295 73074008 291.0 + 0 ENSG00000237768.2 antisense AL731563.2 2 OTTHUMG00000018447.2 +12573 chr10 ENSEMBL gene 73082494 73082595 102.0 - 0 ENSG00000201047.1 misc_RNA RF00019 3 +12574 chr10 HAVANA gene 73007217 73096974 3093.0 - 0 ENSG00000122884.12 protein_coding P4HA1 2 OTTHUMG00000018449.3 ncRNA_host +12575 chr10 HAVANA gene 73098044 73101297 3005.0 - 0 ENSG00000272630.1 lincRNA AL731563.3 2 OTTHUMG00000186419.1 +12576 chr10 HAVANA gene 73124573 73125532 960.0 - 0 ENSG00000272599.2 antisense AC016394.1 2 OTTHUMG00000186420.1 +12577 chr10 ENSEMBL gene 73126080 73126207 128.0 - 0 ENSG00000221164.1 snoRNA SNORA11F 3 +12578 chr10 HAVANA gene 73110375 73131828 2521.0 + 0 ENSG00000166321.13 protein_coding NUDT13 2 OTTHUMG00000018453.2 +12579 chr10 HAVANA gene 73130155 73169055 3687.0 - 0 ENSG00000122882.10 protein_coding ECD 2 OTTHUMG00000018451.6 +12580 chr10 ENSEMBL gene 73192223 73192325 103.0 - 0 ENSG00000199201.1 misc_RNA RF00019 3 +12581 chr10 HAVANA gene 73199826 73201225 1070.0 + 0 ENSG00000227382.1 processed_pseudogene EIF4A2P2 1 OTTHUMG00000018452.1 pseudo_consens,overlapping_locus +12582 chr10 HAVANA gene 73168166 73244504 7473.0 + 0 ENSG00000138286.14 protein_coding FAM149B1 2 OTTHUMG00000067794.2 overlapping_locus +12583 chr10 HAVANA gene 73183362 73248862 3955.0 - 0 ENSG00000213551.4 protein_coding DNAJC9 2 OTTHUMG00000018461.1 ncRNA_host,overlapping_locus +12584 chr10 HAVANA gene 73248843 73252693 2794.0 - 0 ENSG00000182180.13 protein_coding MRPS16 2 OTTHUMG00000018454.1 overlapping_locus +12585 chr10 HAVANA gene 73252791 73254349 940.0 + 0 ENSG00000227540.1 antisense DNAJC9-AS1 1 OTTHUMG00000018458.1 overlapping_locus +12586 chr10 HAVANA gene 73247360 73276984 3260.0 + 0 ENSG00000236756.4 antisense DNAJC9-AS1 1 OTTHUMG00000018460.3 overlapping_locus +12587 chr10 ENSEMBL gene 73279062 73279168 107.0 + 0 ENSG00000200356.1 snRNA RNU6-833P 3 +12588 chr10 ENSEMBL gene 73346936 73347048 113.0 + 0 ENSG00000207473.1 misc_RNA RF00019 3 +12589 chr10 HAVANA gene 73253759 73358859 7428.0 - 0 ENSG00000156042.17 protein_coding CFAP70 2 OTTHUMG00000018459.2 +12590 chr10 HAVANA gene 73381433 73383496 401.0 + 0 ENSG00000233144.1 antisense AL512656.1 1 OTTHUMG00000018462.1 +12591 chr10 HAVANA gene 73375101 73414076 2862.0 - 0 ENSG00000138279.15 protein_coding ANXA7 2 OTTHUMG00000018463.5 +12592 chr10 HAVANA gene 73422259 73422696 438.0 - 0 ENSG00000229659.1 processed_pseudogene RPL26P6 1 OTTHUMG00000018465.1 pseudo_consens +12593 chr10 HAVANA gene 73423579 73433561 2423.0 - 0 ENSG00000166343.9 protein_coding MSS51 2 OTTHUMG00000018464.5 +12594 chr10 HAVANA gene 73436428 73496024 5094.0 - 0 ENSG00000107758.15 protein_coding PPP3CB 2 OTTHUMG00000018472.3 +12595 chr10 HAVANA gene 73495525 73520070 5687.0 + 0 ENSG00000221817.9 processed_transcript PPP3CB-AS1 2 OTTHUMG00000018470.6 +12596 chr10 ENSEMBL gene 73529051 73529157 107.0 - 0 ENSG00000207327.1 snRNA RNU6-883P 3 +12597 chr10 HAVANA gene 73537803 73538391 284.0 + 0 ENSG00000237139.1 processed_pseudogene RPS26P41 1 OTTHUMG00000018468.1 pseudo_consens +12598 chr10 HAVANA gene 73497538 73625953 9498.0 - 0 ENSG00000166348.18 protein_coding USP54 2 OTTHUMG00000018469.8 ncRNA_host +12599 chr10 HAVANA gene 73625996 73626790 795.0 + 0 ENSG00000268584.1 antisense AC073389.1 2 OTTHUMG00000182569.1 +12600 chr10 HAVANA gene 73630556 73631490 935.0 + 0 ENSG00000272791.1 lincRNA AC073389.3 2 OTTHUMG00000186447.1 +12601 chr10 HAVANA gene 73631654 73641757 1541.0 - 0 ENSG00000177791.11 protein_coding MYOZ1 2 OTTHUMG00000018466.1 +12602 chr10 HAVANA gene 73644881 73663803 5147.0 - 0 ENSG00000166317.11 protein_coding SYNPO2L 2 OTTHUMG00000018471.6 +12603 chr10 HAVANA gene 73654039 73674719 805.0 + 0 ENSG00000271848.1 antisense AC073389.2 2 OTTHUMG00000185405.1 +12604 chr10 HAVANA gene 73674285 73698159 3115.0 - 0 ENSG00000172650.13 protein_coding AGAP5 2 OTTHUMG00000018473.3 overlapping_locus +12605 chr10 ENSEMBL gene 73706490 73706613 124.0 + 0 ENSG00000252072.1 rRNA_pseudogene RNA5SP320 3 +12606 chr10 HAVANA gene 73703735 73713581 1192.0 - 0 ENSG00000272140.2 lincRNA AC022400.5 2 OTTHUMG00000185468.2 overlapping_locus +12607 chr10 HAVANA gene 73674295 73730466 3810.0 - 0 ENSG00000242288.9 processed_transcript AC022400.3 2 OTTHUMG00000185467.1 overlapping_locus +12608 chr10 HAVANA gene 73715843 73730469 1982.0 - 0 ENSG00000242338.6 transcribed_unprocessed_pseudogene BMS1P4 2 OTTHUMG00000018478.2 overlapping_locus +12609 chr10 HAVANA gene 73699151 73730487 1913.0 - 0 ENSG00000271816.1 processed_transcript BMS1P4 2 OTTHUMG00000018474.3 overlapping_locus +12610 chr10 HAVANA gene 73731824 73733638 1815.0 + 0 ENSG00000235316.1 processed_pseudogene DUSP8P5 1 OTTHUMG00000018485.1 pseudo_consens,overlapping_locus +12611 chr10 HAVANA gene 73730562 73737311 1028.0 + 0 ENSG00000250959.2 transcribed_unprocessed_pseudogene GLUD1P3 1 OTTHUMG00000018477.2 pseudo_consens,overlapping_locus +12612 chr10 HAVANA gene 73740538 73740823 286.0 - 0 ENSG00000270808.1 processed_pseudogene AC022400.4 1 OTTHUMG00000184747.1 pseudo_consens +12613 chr10 HAVANA gene 73742995 73744230 1236.0 - 0 ENSG00000279088.1 TEC AC022400.7 2 OTTHUMG00000176185.1 +12614 chr10 HAVANA gene 73744384 73772161 5341.0 + 0 ENSG00000176986.15 protein_coding SEC24C 2 OTTHUMG00000018476.5 +12615 chr10 HAVANA gene 73769264 73772862 3599.0 - 0 ENSG00000279689.1 TEC AC022400.8 2 OTTHUMG00000187421.1 +12616 chr10 HAVANA gene 73772291 73780251 4910.0 + 0 ENSG00000196968.10 protein_coding FUT11 2 OTTHUMG00000018483.2 +12617 chr10 HAVANA gene 73782047 73783652 1483.0 + 0 ENSG00000172586.7 protein_coding CHCHD1 2 OTTHUMG00000018475.1 +12618 chr10 HAVANA gene 73791218 73791490 273.0 + 0 ENSG00000280238.1 TEC AC022400.9 2 OTTHUMG00000184284.1 overlapping_locus +12619 chr10 HAVANA gene 73796514 73801399 1460.0 - 0 ENSG00000272589.1 antisense ZSWIM8-AS1 2 OTTHUMG00000185986.2 overlapping_locus +12620 chr10 HAVANA gene 73785582 73801797 7953.0 + 0 ENSG00000214655.10 protein_coding ZSWIM8 2 OTTHUMG00000018486.5 overlapping_locus +12621 chr10 HAVANA gene 73796514 73811651 5818.0 - 0 ENSG00000272916.5 protein_coding AC022400.6 2 OTTHUMG00000185992.1 overlapping_locus +12622 chr10 HAVANA gene 73801911 73811798 4654.0 - 0 ENSG00000166507.17 protein_coding NDST2 2 OTTHUMG00000018489.4 overlapping_locus +12623 chr10 HAVANA gene 73813518 73814737 445.0 + 0 ENSG00000224195.1 antisense AC022400.1 1 OTTHUMG00000018479.1 +12624 chr10 HAVANA gene 73841833 73847115 866.0 + 0 ENSG00000229990.3 antisense AC022400.2 1 OTTHUMG00000018480.3 +12625 chr10 HAVANA gene 73812501 73874591 6780.0 - 0 ENSG00000148660.20 protein_coding CAMK2G 2 OTTHUMG00000018492.4 +12626 chr10 HAVANA gene 73909177 73917497 2950.0 + 0 ENSG00000122861.15 protein_coding PLAU 2 OTTHUMG00000018494.5 +12627 chr10 HAVANA gene 73909969 73922777 2514.0 - 0 ENSG00000222047.8 protein_coding C10orf55 2 OTTHUMG00000018496.1 +12628 chr10 HAVANA gene 74005137 74027915 442.0 + 0 ENSG00000225761.1 sense_intronic AL596247.1 2 OTTHUMG00000018491.1 overlapping_locus +12629 chr10 HAVANA gene 73995193 74121363 9992.0 + 0 ENSG00000035403.17 protein_coding VCL 2 OTTHUMG00000018498.4 overlapping_locus +12630 chr10 HAVANA gene 74120255 74151063 5912.0 - 0 ENSG00000185009.12 protein_coding AP3M1 2 OTTHUMG00000018497.2 +12631 chr10 HAVANA gene 74344550 74344805 256.0 - 0 ENSG00000236900.1 processed_pseudogene TIMM9P1 1 OTTHUMG00000018503.1 pseudo_consens +12632 chr10 HAVANA gene 74371535 74372416 882.0 + 0 ENSG00000214629.3 processed_pseudogene RPSAP6 1 OTTHUMG00000018500.1 pseudo_consens,overlapping_locus +12633 chr10 HAVANA gene 74423435 74424014 580.0 - 0 ENSG00000213731.2 processed_pseudogene RAB5CP1 1 OTTHUMG00000018501.1 pseudo_consens +12634 chr10 HAVANA gene 74527584 74527947 364.0 + 0 ENSG00000226253.1 processed_pseudogene MRPL35P3 1 OTTHUMG00000018504.2 pseudo_consens,overlapping_locus +12635 chr10 HAVANA gene 74506081 74530553 1230.0 - 0 ENSG00000232342.7 antisense AC022540.1 2 OTTHUMG00000018505.4 +12636 chr10 ENSEMBL gene 74551392 74551493 102.0 + 0 ENSG00000206756.1 misc_RNA RF00019 3 +12637 chr10 HAVANA gene 74641410 74641776 367.0 - 0 ENSG00000271710.1 processed_pseudogene NDUFA8P1 1 OTTHUMG00000184746.1 pseudo_consens +12638 chr10 HAVANA gene 74654956 74656131 1176.0 + 0 ENSG00000214626.2 processed_pseudogene POLR3DP1 1 OTTHUMG00000018507.1 pseudo_consens,overlapping_locus +12639 chr10 HAVANA gene 74151185 74709303 3184.0 + 0 ENSG00000156110.13 protein_coding ADK 2 OTTHUMG00000018506.2 ncRNA_host,overlapping_locus +12640 chr10 HAVANA gene 74744386 74744707 322.0 - 0 ENSG00000213525.3 processed_pseudogene FAM32CP 1 OTTHUMG00000018508.1 pseudo_consens +12641 chr10 HAVANA gene 74821610 74822130 521.0 - 0 ENSG00000272748.1 lincRNA AC063962.1 2 OTTHUMG00000186424.1 +12642 chr10 HAVANA gene 75023475 75024251 380.0 - 0 ENSG00000227186.1 antisense AC018511.1 2 OTTHUMG00000018511.1 overlapping_locus +12643 chr10 HAVANA gene 75003055 75025174 189.0 - 0 ENSG00000234149.1 antisense AC018511.2 2 OTTHUMG00000018510.1 overlapping_locus +12644 chr10 HAVANA gene 74824927 75032624 32495.0 + 0 ENSG00000156650.13 protein_coding KAT6B 2 OTTHUMG00000018509.8 +12645 chr10 HAVANA gene 75041876 75055754 2337.0 + 0 ENSG00000285810.1 antisense AC018511.5 2 OTTHUMG00000192784.1 +12646 chr10 HAVANA gene 75037836 75058514 663.0 - 0 ENSG00000188716.5 protein_coding DUPD1 2 OTTHUMG00000018512.3 +12647 chr10 HAVANA gene 75089248 75089725 478.0 - 0 ENSG00000237882.1 processed_pseudogene PPIAP13 1 OTTHUMG00000018513.1 pseudo_consens +12648 chr10 HAVANA gene 75094432 75109221 2351.0 - 0 ENSG00000079393.20 protein_coding DUSP13 1 OTTHUMG00000018516.10 +12649 chr10 HAVANA gene 75125217 75125862 326.0 + 0 ENSG00000232437.1 processed_pseudogene RPS26P42 1 OTTHUMG00000018514.1 pseudo_consens,overlapping_locus +12650 chr10 HAVANA gene 75099586 75182123 7316.0 + 0 ENSG00000156671.13 protein_coding SAMD8 2 OTTHUMG00000018515.6 overlapping_locus +12651 chr10 HAVANA gene 75210154 75231448 2827.0 + 0 ENSG00000165637.13 protein_coding VDAC2 2 OTTHUMG00000018517.6 +12652 chr10 HAVANA gene 75233969 75236030 1580.0 - 0 ENSG00000165644.10 protein_coding COMTD1 2 OTTHUMG00000018518.2 +12653 chr10 HAVANA gene 75269392 75269545 154.0 - 0 ENSG00000227271.1 processed_pseudogene RPL39P25 1 OTTHUMG00000018520.1 pseudo_consens +12654 chr10 HAVANA gene 75276376 75276646 271.0 - 0 ENSG00000233313.2 processed_pseudogene HMGA1P5 2 OTTHUMG00000018521.2 +12655 chr10 HAVANA gene 75288333 75288682 350.0 - 0 ENSG00000223428.1 transcribed_processed_pseudogene AC010997.1 1 OTTHUMG00000018523.1 pseudo_consens,overlapping_locus +12656 chr10 HAVANA gene 75269819 75373500 3272.0 + 0 ENSG00000226051.7 lincRNA ZNF503-AS1 2 OTTHUMG00000018524.3 +12657 chr10 HAVANA gene 75382393 75382844 452.0 - 0 ENSG00000236797.1 transcribed_processed_pseudogene SPA17P1 1 OTTHUMG00000018525.1 pseudo_consens,overlapping_locus +12658 chr10 HAVANA gene 75279726 75401246 564.0 - 0 ENSG00000270087.5 lincRNA ZNF503 2 OTTHUMG00000184165.1 overlapping_locus +12659 chr10 HAVANA gene 75397830 75401906 3347.0 - 0 ENSG00000165655.16 protein_coding ZNF503 2 OTTHUMG00000018526.2 overlapping_locus +12660 chr10 HAVANA gene 75401519 75408982 3348.0 + 0 ENSG00000237149.5 antisense ZNF503-AS2 2 OTTHUMG00000018528.4 +12661 chr10 HAVANA gene 75408973 75409326 354.0 - 0 ENSG00000273248.1 lincRNA AC010997.4 2 OTTHUMG00000186430.1 +12662 chr10 HAVANA gene 75409157 75411842 1890.0 + 0 ENSG00000272692.1 lincRNA AC010997.3 2 OTTHUMG00000186431.1 +12663 chr10 HAVANA gene 75430571 75431588 260.0 - 0 ENSG00000236842.1 antisense AC010997.2 2 OTTHUMG00000018527.1 +12664 chr10 HAVANA gene 75450081 75451725 1645.0 + 0 ENSG00000279814.1 TEC AC010997.5 2 OTTHUMG00000183089.1 +12665 chr10 ENSEMBL gene 75552458 75552553 96.0 + 0 ENSG00000207583.1 miRNA MIR606 3 +12666 chr10 HAVANA gene 75642476 75643106 631.0 + 0 ENSG00000268659.2 sense_intronic AL589863.1 2 OTTHUMG00000183093.2 overlapping_locus +12667 chr10 HAVANA gene 75742740 75743755 434.0 + 0 ENSG00000228280.1 sense_intronic AL731568.1 1 OTTHUMG00000018529.1 overlapping_locus +12668 chr10 ENSEMBL gene 76242022 76242301 280.0 - 0 ENSG00000265486.2 misc_RNA RN7SL518P 3 +12669 chr10 ENSEMBL gene 76260800 76260903 104.0 - 0 ENSG00000201954.1 snRNA RNU6-673P 3 +12670 chr10 HAVANA gene 76270206 76270800 595.0 + 0 ENSG00000278992.1 TEC AC012048.1 2 OTTHUMG00000183095.1 overlapping_locus +12671 chr10 HAVANA gene 76437408 76438775 381.0 - 0 ENSG00000230575.1 antisense AC013286.1 1 OTTHUMG00000018530.1 +12672 chr10 HAVANA gene 75431453 76560167 6560.0 + 0 ENSG00000148655.14 protein_coding LRMDA 1 OTTHUMG00000018532.4 ncRNA_host,overlapping_locus +12673 chr10 HAVANA gene 76558350 76560994 592.0 - 0 ENSG00000269256.1 antisense AC024603.1 2 OTTHUMG00000183096.1 +12674 chr10 ENSEMBL gene 76835377 76835502 126.0 - 0 ENSG00000252888.1 snoRNA RF00322 3 +12675 chr10 HAVANA gene 76836568 76836861 294.0 + 0 ENSG00000224948.1 processed_pseudogene ATP5MC1P8 1 OTTHUMG00000018533.1 pseudo_consens +12676 chr10 HAVANA gene 76888044 76980624 7061.0 + 0 ENSG00000236467.8 antisense KCNMA1-AS1 2 OTTHUMG00000018534.6 +12677 chr10 HAVANA gene 77147652 77150100 457.0 + 0 ENSG00000225497.5 antisense KCNMA1-AS2 1 OTTHUMG00000018537.1 +12678 chr10 HAVANA gene 77313941 77315694 418.0 + 0 ENSG00000224500.1 antisense AL731575.1 2 OTTHUMG00000018538.1 +12679 chr10 HAVANA gene 77354404 77376613 701.0 + 0 ENSG00000225652.1 antisense KCNMA1-AS3 2 OTTHUMG00000018539.1 +12680 chr10 HAVANA gene 77433572 77433782 211.0 - 0 ENSG00000228092.1 processed_pseudogene COX6CP15 1 OTTHUMG00000018540.1 pseudo_consens,overlapping_locus +12681 chr10 ENSEMBL gene 77587049 77587159 111.0 + 0 ENSG00000199592.1 rRNA_pseudogene RNA5SP321 3 +12682 chr10 HAVANA gene 76869601 77638369 35644.0 - 0 ENSG00000156113.22 protein_coding KCNMA1 1 OTTHUMG00000018543.32 overlapping_locus +12683 chr10 HAVANA gene 77730766 77734769 3711.0 + 0 ENSG00000213514.2 processed_pseudogene AL731556.1 2 OTTHUMG00000018541.1 +12684 chr10 HAVANA gene 77738246 77739015 770.0 + 0 ENSG00000277981.1 unprocessed_pseudogene AL731556.2 2 OTTHUMG00000187845.1 +12685 chr10 ENSEMBL gene 77776951 77777055 105.0 - 0 ENSG00000199664.1 snRNA RNU6-1266P 3 +12686 chr10 HAVANA gene 77780337 77781876 1540.0 - 0 ENSG00000213513.3 processed_pseudogene IMPDH1P5 1 OTTHUMG00000018544.1 pseudo_consens +12687 chr10 HAVANA gene 77782866 77793176 3532.0 + 0 ENSG00000228748.2 antisense AL450306.1 1 OTTHUMG00000018545.2 +12688 chr10 HAVANA gene 77866875 77869610 1922.0 + 0 ENSG00000204049.1 antisense AL391421.1 2 OTTHUMG00000187422.1 +12689 chr10 ENSEMBL gene 77912271 77912545 275.0 - 0 ENSG00000243446.3 misc_RNA RN7SL284P 3 +12690 chr10 HAVANA gene 77790791 77926526 10271.0 - 0 ENSG00000151208.16 protein_coding DLG5 2 OTTHUMG00000018548.4 ncRNA_host +12691 chr10 HAVANA gene 77927372 77929824 2445.0 + 0 ENSG00000233871.2 processed_transcript DLG5-AS1 1 OTTHUMG00000018547.2 +12692 chr10 HAVANA gene 77953495 77953876 382.0 + 0 ENSG00000234612.1 processed_pseudogene H2AFZP5 1 OTTHUMG00000018546.1 pseudo_consens +12693 chr10 ENSEMBL gene 77966173 77966440 268.0 + 0 ENSG00000274686.1 misc_RNA RF00017 3 +12694 chr10 HAVANA gene 77969251 78029545 8917.0 - 0 ENSG00000148606.12 protein_coding POLR3A 2 OTTHUMG00000018550.2 +12695 chr10 HAVANA gene 78033732 78056813 7857.0 + 0 ENSG00000138326.19 protein_coding RPS24 2 OTTHUMG00000018549.6 +12696 chr10 HAVANA gene 78068623 78069538 916.0 - 0 ENSG00000231957.2 processed_pseudogene GNAI2P2 1 OTTHUMG00000018597.2 pseudo_consens +12697 chr10 HAVANA gene 78176928 78178186 1259.0 + 0 ENSG00000283096.1 lincRNA AL731555.1 2 OTTHUMG00000191564.1 +12698 chr10 HAVANA gene 78293842 78301003 520.0 + 0 ENSG00000229543.1 lincRNA AC010163.1 2 OTTHUMG00000018553.1 overlapping_locus +12699 chr10 HAVANA gene 78352597 78356100 381.0 + 0 ENSG00000230229.1 lincRNA AC010163.2 2 OTTHUMG00000018554.1 overlapping_locus +12700 chr10 ENSEMBL gene 78367507 78367623 117.0 + 0 ENSG00000201393.1 snoRNA RF00056 3 +12701 chr10 HAVANA gene 78179185 78551355 9354.0 + 0 ENSG00000230417.11 lincRNA LINC00856 2 OTTHUMG00000018552.3 ncRNA_host,overlapping_locus +12702 chr10 HAVANA gene 78538391 78551719 572.0 - 0 ENSG00000282952.1 lincRNA AL583852.1 2 OTTHUMG00000191565.1 +12703 chr10 HAVANA gene 78179174 78675109 1370.0 + 0 ENSG00000282863.1 lincRNA AC012560.1 2 OTTHUMG00000018555.5 ncRNA_host,overlapping_locus +12704 chr10 HAVANA gene 78696062 78697022 579.0 - 0 ENSG00000228683.1 lincRNA AC016820.1 2 OTTHUMG00000018556.1 +12705 chr10 HAVANA gene 79000484 79003803 2018.0 - 0 ENSG00000229569.1 lincRNA AL356753.1 1 OTTHUMG00000018558.1 overlapping_locus +12706 chr10 HAVANA gene 78943328 79067895 4427.0 - 0 ENSG00000224596.7 antisense ZMIZ1-AS1 2 OTTHUMG00000018559.2 overlapping_locus +12707 chr10 HAVANA gene 79069035 79316528 11048.0 + 0 ENSG00000108175.16 protein_coding ZMIZ1 2 OTTHUMG00000018560.2 +12708 chr10 HAVANA gene 79347469 79355337 2674.0 + 0 ENSG00000108179.13 protein_coding PPIF 2 OTTHUMG00000018562.4 +12709 chr10 HAVANA gene 79382328 79409274 511.0 + 0 ENSG00000235426.2 antisense AL133481.1 2 OTTHUMG00000018564.3 +12710 chr10 HAVANA gene 79382325 79445627 5051.0 - 0 ENSG00000165424.6 protein_coding ZCCHC24 2 OTTHUMG00000018561.1 +12711 chr10 HAVANA gene 79499666 79499984 319.0 - 0 ENSG00000259021.2 processed_pseudogene TPRX1P1 2 OTTHUMG00000171166.2 +12712 chr10 HAVANA gene 79504073 79506281 333.0 - 0 ENSG00000241317.1 lincRNA AL133481.3 1 OTTHUMG00000034448.1 +12713 chr10 HAVANA gene 79507597 79510982 799.0 - 0 ENSG00000235705.6 transcribed_processed_pseudogene AL133481.2 2 OTTHUMG00000034449.4 +12714 chr10 HAVANA gene 79512601 79516440 3840.0 + 0 ENSG00000253626.3 protein_coding EIF5AL1 2 OTTHUMG00000018563.5 retrogene +12715 chr10 HAVANA gene 79526508 79526631 124.0 - 0 ENSG00000271985.1 processed_pseudogene BX248123.2 2 OTTHUMG00000185654.1 +12716 chr10 HAVANA gene 79544087 79544356 270.0 + 0 ENSG00000232965.1 processed_pseudogene RPS12P18 1 OTTHUMG00000018567.2 pseudo_consens +12717 chr10 HAVANA gene 79555852 79560402 2690.0 - 0 ENSG00000185303.16 protein_coding SFTPA2 2 OTTHUMG00000018566.3 +12718 chr10 HAVANA gene 79582298 79584877 644.0 - 0 ENSG00000219430.2 unprocessed_pseudogene MBL3P 2 OTTHUMG00000018569.1 +12719 chr10 HAVANA gene 79595294 79595660 367.0 - 0 ENSG00000225827.1 processed_pseudogene SFTPA3P 2 OTTHUMG00000018568.1 +12720 chr10 HAVANA gene 79610939 79615455 2451.0 + 0 ENSG00000122852.14 protein_coding SFTPA1 2 OTTHUMG00000018565.5 +12721 chr10 HAVANA gene 79628757 79632188 687.0 - 0 ENSG00000226676.1 lincRNA BX248123.1 2 OTTHUMG00000018570.1 +12722 chr10 HAVANA gene 79663192 79664786 1595.0 + 0 ENSG00000272489.1 sense_intronic AL132656.3 2 OTTHUMG00000185655.1 overlapping_locus +12723 chr10 HAVANA gene 79660891 79677996 1837.0 + 0 ENSG00000244733.5 lincRNA AL132656.2 2 OTTHUMG00000018574.4 overlapping_locus +12724 chr10 HAVANA gene 79681973 79684094 2122.0 - 0 ENSG00000280355.1 TEC AL132656.4 2 OTTHUMG00000185656.1 overlapping_locus +12725 chr10 HAVANA gene 79684494 79684983 490.0 - 0 ENSG00000224886.2 transcribed_processed_pseudogene AL132656.1 2 OTTHUMG00000018571.2 overlapping_locus +12726 chr10 HAVANA gene 79682997 79685436 2440.0 + 0 ENSG00000278616.1 processed_pseudogene BEND3P3 2 OTTHUMG00000187848.1 +12727 chr10 HAVANA gene 79703227 79714681 5080.0 + 0 ENSG00000188199.10 protein_coding NUTM2B 2 OTTHUMG00000018572.3 +12728 chr10 HAVANA gene 79663088 79826594 14755.0 - 0 ENSG00000225484.6 antisense NUTM2B-AS1 2 OTTHUMG00000018585.2 overlapping_locus +12729 chr10 HAVANA gene 79825902 79827602 1701.0 + 0 ENSG00000272447.1 lincRNA AL135925.1 2 OTTHUMG00000185658.1 +12730 chr10 HAVANA gene 79841358 79850878 3625.0 + 0 ENSG00000228570.7 protein_coding NUTM2E 2 OTTHUMG00000018586.4 +12731 chr10 HAVANA gene 79860573 79861806 1234.0 + 0 ENSG00000214695.3 processed_pseudogene NPAP1P2 2 OTTHUMG00000018588.1 +12732 chr10 HAVANA gene 79870375 79873903 1002.0 - 0 ENSG00000204437.7 unprocessed_pseudogene CTSLP6 2 OTTHUMG00000018589.1 +12733 chr10 HAVANA gene 79892148 79893175 1028.0 - 0 ENSG00000214584.3 processed_pseudogene PGGT1BP2 1 OTTHUMG00000018591.1 pseudo_consens +12734 chr10 HAVANA gene 79906605 79907856 365.0 + 0 ENSG00000283101.1 transcribed_unprocessed_pseudogene BMS1P21 2 OTTHUMG00000191473.1 overlapping_locus +12735 chr10 HAVANA gene 79920178 79923119 1424.0 + 0 ENSG00000242600.8 transcribed_unitary_pseudogene MBL1P 2 OTTHUMG00000018595.3 overlapping_locus +12736 chr10 HAVANA gene 79904898 79951029 2077.0 + 0 ENSG00000283913.1 processed_transcript BMS1P21 2 OTTHUMG00000191903.1 overlapping_locus +12737 chr10 HAVANA gene 79970963 79973213 2251.0 - 0 ENSG00000280259.1 TEC AL512662.1 2 OTTHUMG00000185659.1 overlapping_locus +12738 chr10 HAVANA gene 79968213 79973213 5001.0 + 0 ENSG00000273372.1 antisense SFTPD-AS1 2 OTTHUMG00000186448.1 +12739 chr10 HAVANA gene 79981839 79982212 374.0 + 0 ENSG00000235924.1 processed_pseudogene ZNRF2P3 2 OTTHUMG00000018593.1 +12740 chr10 HAVANA gene 79937740 79982614 1321.0 - 0 ENSG00000133661.15 protein_coding SFTPD 2 OTTHUMG00000018590.5 overlapping_locus +12741 chr10 HAVANA gene 79982910 79983240 331.0 - 0 ENSG00000225100.2 processed_pseudogene DPY19L2P5 2 OTTHUMG00000018594.2 +12742 chr10 HAVANA gene 80017713 80017911 199.0 - 0 ENSG00000229616.2 unprocessed_pseudogene AL356095.1 2 OTTHUMG00000185660.1 +12743 chr10 HAVANA gene 80024737 80025159 423.0 - 0 ENSG00000224760.4 processed_pseudogene C1DP3 1 OTTHUMG00000018598.3 pseudo_consens +12744 chr10 HAVANA gene 80031968 80032393 426.0 - 0 ENSG00000236217.4 processed_pseudogene C1DP2 1 OTTHUMG00000018599.2 pseudo_consens +12745 chr10 HAVANA gene 80040621 80041044 424.0 - 0 ENSG00000227515.3 processed_pseudogene C1DP4 1 OTTHUMG00000018600.3 pseudo_consens +12746 chr10 HAVANA gene 80053428 80053548 121.0 - 0 ENSG00000282432.1 transcribed_unprocessed_pseudogene AL356095.3 2 OTTHUMG00000191404.1 +12747 chr10 HAVANA gene 80046860 80078912 3138.0 - 0 ENSG00000230091.6 antisense TMEM254-AS1 2 OTTHUMG00000018601.2 +12748 chr10 HAVANA gene 80091411 80091867 457.0 - 0 ENSG00000279399.1 TEC AL356095.2 2 OTTHUMG00000185664.1 +12749 chr10 HAVANA gene 80078646 80092557 2996.0 + 0 ENSG00000133678.13 protein_coding TMEM254 2 OTTHUMG00000018602.1 +12750 chr10 HAVANA gene 80125941 80126317 377.0 + 0 ENSG00000230171.1 processed_pseudogene RPL22P18 1 OTTHUMG00000018603.1 pseudo_consens +12751 chr10 HAVANA gene 80131682 80145359 1240.0 + 0 ENSG00000189129.13 protein_coding PLAC9 2 OTTHUMG00000018596.2 +12752 chr10 HAVANA gene 80150889 80205572 8513.0 - 0 ENSG00000122359.17 protein_coding ANXA11 2 OTTHUMG00000018604.3 +12753 chr10 HAVANA gene 80215851 80216119 269.0 - 0 ENSG00000234319.1 processed_pseudogene RPS12P2 1 OTTHUMG00000018606.1 pseudo_consens +12754 chr10 HAVANA gene 80207710 80219657 2171.0 + 0 ENSG00000237523.1 lincRNA LINC00857 1 OTTHUMG00000018605.1 +12755 chr10 HAVANA gene 80233664 80245367 629.0 + 0 ENSG00000234382.2 unprocessed_pseudogene AL513174.1 2 OTTHUMG00000018607.2 +12756 chr10 HAVANA gene 80247219 80247683 465.0 - 0 ENSG00000234743.1 processed_pseudogene EIF5AP4 1 OTTHUMG00000018608.1 pseudo_consens +12757 chr10 HAVANA gene 80249710 80254121 4412.0 + 0 ENSG00000279359.1 TEC AL359195.2 2 OTTHUMG00000187436.1 +12758 chr10 HAVANA gene 80271820 80289684 3690.0 - 0 ENSG00000151224.12 protein_coding MAT1A 2 OTTHUMG00000018613.2 +12759 chr10 HAVANA gene 80297720 80299655 1626.0 + 0 ENSG00000232950.1 processed_pseudogene ZNF519P1 2 OTTHUMG00000018611.1 +12760 chr10 HAVANA gene 80333771 80334426 339.0 + 0 ENSG00000235858.1 lincRNA AL359195.1 2 OTTHUMG00000018612.1 +12761 chr10 HAVANA gene 80336105 80356755 1237.0 - 0 ENSG00000170788.13 protein_coding DYDC1 2 OTTHUMG00000018609.2 +12762 chr10 HAVANA gene 80344745 80368073 2465.0 + 0 ENSG00000133665.12 protein_coding DYDC2 2 OTTHUMG00000018610.3 +12763 chr10 HAVANA gene 80407829 80437115 6520.0 + 0 ENSG00000122378.13 protein_coding PRXL2A 2 OTTHUMG00000018614.3 +12764 chr10 HAVANA gene 80454166 80533123 17888.0 + 0 ENSG00000108219.14 protein_coding TSPAN14 2 OTTHUMG00000018615.4 +12765 chr10 HAVANA gene 80529597 80535942 598.0 - 0 ENSG00000226659.1 antisense AC021028.1 1 OTTHUMG00000018616.1 +12766 chr10 HAVANA gene 80537902 80646560 4363.0 + 0 ENSG00000178217.14 protein_coding SH2D4B 2 OTTHUMG00000018617.5 +12767 chr10 HAVANA gene 80649797 80653732 370.0 + 0 ENSG00000231082.1 lincRNA AL731544.1 2 OTTHUMG00000018618.1 +12768 chr10 HAVANA gene 80716483 80717068 586.0 - 0 ENSG00000233353.1 processed_pseudogene RPS7P9 1 OTTHUMG00000018619.1 pseudo_consens +12769 chr10 HAVANA gene 80749632 80751231 405.0 - 0 ENSG00000233703.1 processed_pseudogene AC027673.1 2 OTTHUMG00000018620.1 +12770 chr10 HAVANA gene 80776165 80778088 1778.0 - 0 ENSG00000231060.1 processed_pseudogene FARSBP1 1 OTTHUMG00000018621.1 pseudo_consens +12771 chr10 HAVANA gene 80940665 80941201 537.0 - 0 ENSG00000227209.1 processed_pseudogene WARS2P1 1 OTTHUMG00000018622.1 pseudo_consens +12772 chr10 HAVANA gene 81136540 81137335 796.0 - 0 ENSG00000226466.2 processed_pseudogene RPA2P2 1 OTTHUMG00000018623.1 pseudo_consens +12773 chr10 HAVANA gene 82207620 82210345 1510.0 - 0 ENSG00000285739.1 antisense AC010157.2 2 OTTHUMG00000192949.2 +12774 chr10 HAVANA gene 82224213 82229179 527.0 - 0 ENSG00000229458.2 antisense AC010157.1 1 OTTHUMG00000018625.2 overlapping_locus +12775 chr10 HAVANA gene 82228985 82232920 813.0 - 0 ENSG00000225738.2 processed_transcript NRG3-AS1 2 OTTHUMG00000018624.2 overlapping_locus +12776 chr10 ENSEMBL gene 82340771 82340876 106.0 + 0 ENSG00000207275.1 snRNA RNU6-441P 3 +12777 chr10 HAVANA gene 81875314 82987179 5072.0 + 0 ENSG00000185737.12 protein_coding NRG3 2 OTTHUMG00000018626.5 ncRNA_host +12778 chr10 ENSEMBL gene 83067962 83068071 110.0 - 0 ENSG00000200774.1 snRNA RNU6-478P 3 +12779 chr10 HAVANA gene 83311628 83314475 2186.0 - 0 ENSG00000234931.1 processed_pseudogene MARK2P15 1 OTTHUMG00000018627.1 pseudo_consens +12780 chr10 HAVANA gene 83672406 83675439 351.0 - 0 ENSG00000233945.1 lincRNA AC069540.2 2 OTTHUMG00000018629.1 +12781 chr10 HAVANA gene 83735506 83736493 988.0 + 0 ENSG00000223565.1 processed_pseudogene AC069540.1 2 OTTHUMG00000018628.1 +12782 chr10 ENSEMBL gene 83764358 83764464 107.0 + 0 ENSG00000212324.1 snRNA RNU6-129P 3 +12783 chr10 HAVANA gene 83911654 83912922 309.0 - 0 ENSG00000233258.1 lincRNA AL390786.1 2 OTTHUMG00000018630.1 +12784 chr10 ENSEMBL gene 84003332 84003479 148.0 + 0 ENSG00000200789.1 snRNA RNU1-65P 3 +12785 chr10 HAVANA gene 84081429 84081995 268.0 + 0 ENSG00000212769.5 processed_pseudogene HMGN2P8 2 OTTHUMG00000018631.2 +12786 chr10 HAVANA gene 84138420 84140582 2163.0 - 0 ENSG00000271933.1 antisense AL603756.1 2 OTTHUMG00000185666.1 +12787 chr10 HAVANA gene 84139440 84153245 2128.0 + 0 ENSG00000165678.20 protein_coding GHITM 2 OTTHUMG00000018637.2 +12788 chr10 HAVANA gene 84167228 84172093 1874.0 - 0 ENSG00000285972.1 lincRNA CERNA2 2 OTTHUMG00000192825.2 +12789 chr10 HAVANA gene 84173738 84185294 888.0 + 0 ENSG00000188373.4 protein_coding C10orf99 2 OTTHUMG00000018635.1 +12790 chr10 HAVANA gene 84194635 84219621 7633.0 + 0 ENSG00000148600.14 protein_coding CDHR1 2 OTTHUMG00000018634.2 +12791 chr10 HAVANA gene 84220495 84225589 3177.0 - 0 ENSG00000204033.9 protein_coding LRIT2 2 OTTHUMG00000018633.4 +12792 chr10 HAVANA gene 84231593 84241461 2228.0 - 0 ENSG00000148602.5 protein_coding LRIT1 2 OTTHUMG00000018632.1 +12793 chr10 HAVANA gene 84245053 84259960 4256.0 + 0 ENSG00000148604.13 protein_coding RGR 2 OTTHUMG00000018636.1 +12794 chr10 HAVANA gene 84279980 84294659 2879.0 + 0 ENSG00000229404.5 lincRNA LINC00858 2 OTTHUMG00000018638.1 +12795 chr10 HAVANA gene 84389170 84389626 457.0 - 0 ENSG00000233189.1 processed_pseudogene RPL12P29 1 OTTHUMG00000018639.1 pseudo_consens +12796 chr10 HAVANA gene 84390908 84392045 1138.0 + 0 ENSG00000225423.1 processed_pseudogene TNPO1P1 1 OTTHUMG00000018640.1 pseudo_consens,overlapping_locus +12797 chr10 HAVANA gene 84454679 84456056 684.0 - 0 ENSG00000225928.2 processed_pseudogene CACYBPP1 1 OTTHUMG00000018643.2 pseudo_consens +12798 chr10 HAVANA gene 84328558 84518521 8452.0 + 0 ENSG00000107771.16 protein_coding CCSER2 2 OTTHUMG00000018641.3 overlapping_locus +12799 chr10 HAVANA gene 84560443 84561263 821.0 + 0 ENSG00000178429.9 processed_pseudogene RPS3AP5 1 OTTHUMG00000018642.2 pseudo_consens +12800 chr10 HAVANA gene 85193421 85197958 2029.0 - 0 ENSG00000237267.1 lincRNA LINC01519 2 OTTHUMG00000018644.1 +12801 chr10 HAVANA gene 85431943 85432515 403.0 - 0 ENSG00000223993.1 lincRNA AC025428.1 2 OTTHUMG00000018645.1 +12802 chr10 HAVANA gene 85432863 85448961 2672.0 + 0 ENSG00000224504.2 lincRNA AC025428.2 2 OTTHUMG00000018646.2 +12803 chr10 HAVANA gene 85449592 85491996 1487.0 + 0 ENSG00000230962.1 lincRNA LINC01520 2 OTTHUMG00000018647.1 +12804 chr10 HAVANA gene 85526880 85531115 4236.0 - 0 ENSG00000279910.1 TEC AL731532.1 2 OTTHUMG00000175690.1 +12805 chr10 ENSEMBL gene 85537379 85537483 105.0 + 0 ENSG00000223064.1 snRNA RNU6-325P 3 +12806 chr10 HAVANA gene 85555484 85557436 1953.0 - 0 ENSG00000280134.1 TEC AL731532.2 2 OTTHUMG00000176190.1 +12807 chr10 HAVANA gene 85577731 85607213 2100.0 + 0 ENSG00000234942.2 antisense GRID1-AS1 1 OTTHUMG00000184154.2 +12808 chr10 ENSEMBL gene 85613017 85613186 170.0 - 0 ENSG00000278333.1 misc_RNA RF02271 3 +12809 chr10 HAVANA gene 85644073 85648066 2619.0 + 0 ENSG00000270002.1 antisense AC022028.2 2 OTTHUMG00000018648.2 +12810 chr10 ENSEMBL gene 85650012 85650260 249.0 - 0 ENSG00000252292.1 misc_RNA RN7SKP238 3 +12811 chr10 HAVANA gene 85708760 85709167 408.0 + 0 ENSG00000236606.1 processed_pseudogene AC022028.1 1 OTTHUMG00000018649.1 pseudo_consens +12812 chr10 ENSEMBL gene 86052448 86052566 119.0 + 0 ENSG00000200487.1 rRNA_pseudogene RNA5SP322 3 +12813 chr10 ENSEMBL gene 86264694 86264788 95.0 - 0 ENSG00000199104.2 miRNA MIR346 3 +12814 chr10 HAVANA gene 85599555 86366493 5927.0 - 0 ENSG00000182771.18 protein_coding GRID1 2 OTTHUMG00000018650.6 ncRNA_host +12815 chr10 ENSEMBL gene 86488446 86488549 104.0 + 0 ENSG00000212332.1 snRNA RNU6-780P 3 +12816 chr10 HAVANA gene 86435256 86521815 7280.0 - 0 ENSG00000062650.18 protein_coding WAPL 2 OTTHUMG00000018651.3 +12817 chr10 HAVANA gene 86521945 86525101 3058.0 + 0 ENSG00000227896.2 antisense AL731569.1 2 OTTHUMG00000018652.2 +12818 chr10 HAVANA gene 86630825 86631628 804.0 - 0 ENSG00000230507.5 processed_pseudogene RPL7AP8 1 OTTHUMG00000018653.1 pseudo_consens +12819 chr10 HAVANA gene 86654557 86666848 2456.0 + 0 ENSG00000122375.11 protein_coding OPN4 2 OTTHUMG00000018654.3 +12820 chr10 HAVANA gene 86668449 86736068 6676.0 + 0 ENSG00000122367.19 protein_coding LDB3 2 OTTHUMG00000018655.7 +12821 chr10 HAVANA gene 86749754 86756298 6545.0 - 0 ENSG00000272631.1 antisense AC067750.1 2 OTTHUMG00000186453.1 +12822 chr10 HAVANA gene 86854696 86856236 1168.0 - 0 ENSG00000270874.1 processed_pseudogene RPAP2P1 1 OTTHUMG00000184745.1 pseudo_consens +12823 chr10 ENSEMBL gene 86889569 86889733 165.0 + 0 ENSG00000200176.1 snRNA RNU1-19P 3 +12824 chr10 HAVANA gene 86756601 86932838 11412.0 + 0 ENSG00000107779.13 protein_coding BMPR1A 2 OTTHUMG00000018657.8 ncRNA_host +12825 chr10 HAVANA gene 86948677 86949875 1199.0 + 0 ENSG00000281974.1 TEC AC025268.1 2 OTTHUMG00000191455.1 +12826 chr10 HAVANA gene 86958618 86963260 1247.0 + 0 ENSG00000173267.13 protein_coding SNCG 2 OTTHUMG00000018656.1 +12827 chr10 HAVANA gene 86935540 86969481 5334.0 - 0 ENSG00000173269.13 protein_coding MMRN2 1 OTTHUMG00000018663.4 overlapping_locus +12828 chr10 HAVANA gene 86970237 86970826 465.0 - 0 ENSG00000273413.1 antisense AL136982.7 2 OTTHUMG00000185999.1 overlapping_locus +12829 chr10 HAVANA gene 86965345 86971311 5748.0 - 0 ENSG00000272734.1 processed_transcript ADIRF-AS1 2 OTTHUMG00000185998.2 overlapping_locus +12830 chr10 HAVANA gene 86968192 86983934 998.0 + 0 ENSG00000148671.13 protein_coding ADIRF 2 OTTHUMG00000018668.3 overlapping_locus +12831 chr10 HAVANA gene 86992253 87000435 932.0 + 0 ENSG00000240089.2 transcribed_unprocessed_pseudogene BMS1P3 2 OTTHUMG00000018662.1 overlapping_locus +12832 chr10 HAVANA gene 87001636 87009905 1740.0 + 0 ENSG00000261011.1 transcribed_unprocessed_pseudogene AL136982.4 1 OTTHUMG00000176765.1 pseudo_consens,overlapping_locus +12833 chr10 HAVANA gene 86970741 87010126 3078.0 + 0 ENSG00000271880.1 processed_transcript AGAP11 2 OTTHUMG00000185463.1 overlapping_locus +12834 chr10 HAVANA gene 86992406 87010203 4560.0 + 0 ENSG00000151303.11 processed_transcript AL136982.1 2 OTTHUMG00000018667.2 overlapping_locus +12835 chr10 HAVANA gene 87009785 87015782 234.0 - 0 ENSG00000229969.1 antisense AL136982.2 2 OTTHUMG00000018659.1 +12836 chr10 HAVANA gene 87020306 87024730 345.0 + 0 ENSG00000188100.8 protein_coding FAM25A 2 OTTHUMG00000018664.2 overlapping_locus +12837 chr10 HAVANA gene 86993432 87024732 1238.0 + 0 ENSG00000272508.1 processed_transcript AL136982.6 2 OTTHUMG00000185464.1 overlapping_locus +12838 chr10 HAVANA gene 87027184 87027477 294.0 + 0 ENSG00000271573.1 processed_pseudogene AL136982.5 1 OTTHUMG00000184644.1 pseudo_consens +12839 chr10 ENSEMBL gene 87041238 87041341 104.0 - 0 ENSG00000200253.1 snRNA RNU6-529P 3 +12840 chr10 HAVANA gene 87050486 87094866 3519.0 - 0 ENSG00000148672.8 protein_coding GLUD1 2 OTTHUMG00000018666.1 +12841 chr10 HAVANA gene 87113954 87115523 688.0 + 0 ENSG00000237280.1 sense_intronic AL136982.3 2 OTTHUMG00000018660.1 overlapping_locus +12842 chr10 ENSEMBL gene 87154041 87154369 329.0 - 0 ENSG00000273946.1 misc_RNA RN7SL733P 3 +12843 chr10 HAVANA gene 87094161 87191468 4242.0 + 0 ENSG00000122376.11 protein_coding SHLD2 2 OTTHUMG00000018669.4 overlapping_locus +12844 chr10 HAVANA gene 87214136 87216173 323.0 - 0 ENSG00000285257.1 unprocessed_pseudogene AL157893.1 2 OTTHUMG00000192554.1 +12845 chr10 HAVANA gene 87225448 87236908 5082.0 + 0 ENSG00000184923.12 protein_coding NUTM2A 2 OTTHUMG00000018670.3 +12846 chr10 HAVANA gene 87203875 87342612 6851.0 - 0 ENSG00000223482.7 antisense NUTM2A-AS1 2 OTTHUMG00000018671.2 +12847 chr10 HAVANA gene 87342736 87357882 3287.0 + 0 ENSG00000224914.3 bidirectional_promoter_lncRNA LINC00863 2 OTTHUMG00000018673.3 overlapping_locus +12848 chr10 HAVANA gene 87357668 87370695 6985.0 + 0 ENSG00000214562.14 protein_coding NUTM2D 2 OTTHUMG00000018672.3 overlapping_locus +12849 chr10 HAVANA gene 87376896 87378481 1586.0 + 0 ENSG00000237740.1 processed_pseudogene NPAP1P3 2 OTTHUMG00000018676.1 +12850 chr10 HAVANA gene 87386685 87390203 1002.0 - 0 ENSG00000236417.2 unprocessed_pseudogene CTSLP1 2 OTTHUMG00000018677.1 +12851 chr10 HAVANA gene 87408044 87408258 215.0 - 0 ENSG00000231569.1 processed_pseudogene AL355334.1 2 OTTHUMG00000018675.1 overlapping_locus +12852 chr10 HAVANA gene 87397023 87424792 775.0 - 0 ENSG00000228055.2 lincRNA LINC00864 2 OTTHUMG00000018674.2 overlapping_locus +12853 chr10 ENSEMBL gene 87503881 87503954 74.0 + 0 ENSG00000283672.1 miRNA MIR4678 3 +12854 chr10 HAVANA gene 87504875 87553460 3016.0 + 0 ENSG00000107789.15 protein_coding MINPP1 2 OTTHUMG00000018678.1 +12855 chr10 HAVANA gene 87591607 87606024 168.0 - 0 ENSG00000223761.1 lincRNA AL138767.2 2 OTTHUMG00000018680.1 +12856 chr10 HAVANA gene 87642607 87642954 348.0 + 0 ENSG00000234192.1 processed_pseudogene RPS26P38 1 OTTHUMG00000018681.1 pseudo_consens,overlapping_locus +12857 chr10 HAVANA gene 87607985 87659279 495.0 + 0 ENSG00000225913.2 lincRNA AL138767.3 2 OTTHUMG00000018682.1 overlapping_locus +12858 chr10 HAVANA gene 87610163 87660003 744.0 - 0 ENSG00000196566.2 antisense AL138767.1 2 OTTHUMG00000018679.1 +12859 chr10 HAVANA gene 87659613 87747705 4083.0 + 0 ENSG00000198682.12 protein_coding PAPSS2 2 OTTHUMG00000018683.1 +12860 chr10 ENSEMBL gene 87832818 87833098 281.0 - 0 ENSG00000243782.3 misc_RNA RN7SL78P 3 +12861 chr10 HAVANA gene 87751512 87841343 5067.0 - 0 ENSG00000138138.13 protein_coding ATAD1 2 OTTHUMG00000018685.1 ncRNA_host +12862 chr10 HAVANA gene 87817928 87845612 2695.0 + 0 ENSG00000223820.5 transcribed_unprocessed_pseudogene CFL1P1 1 OTTHUMG00000018684.5 pseudo_consens +12863 chr10 HAVANA gene 87859161 87863437 4277.0 - 0 ENSG00000227268.3 protein_coding KLLN 2 OTTHUMG00000186455.1 +12864 chr10 HAVANA gene 87878692 87880427 499.0 + 0 ENSG00000224745.1 sense_intronic AC063965.1 2 OTTHUMG00000018686.1 overlapping_locus +12865 chr10 HAVANA gene 87945502 87946024 523.0 + 0 ENSG00000213613.2 processed_pseudogene RPL11P3 1 OTTHUMG00000018687.1 pseudo_consens,overlapping_locus +12866 chr10 HAVANA gene 87863113 87971930 11581.0 + 0 ENSG00000171862.10 protein_coding PTEN 2 OTTHUMG00000018688.2 overlapping_locus +12867 chr10 ENSEMBL gene 87994618 87994695 78.0 - 0 ENSG00000200891.1 snoRNA RF00284 3 +12868 chr10 HAVANA gene 88048135 88049823 713.0 - 0 ENSG00000227905.1 processed_pseudogene MED6P1 1 OTTHUMG00000018689.1 pseudo_consens +12869 chr10 HAVANA gene 88259129 88259372 244.0 - 0 ENSG00000275015.1 unprocessed_pseudogene AL353149.1 2 OTTHUMG00000187850.1 +12870 chr10 HAVANA gene 88273864 88584530 3933.0 - 0 ENSG00000184719.11 protein_coding RNLS 2 OTTHUMG00000018692.1 +12871 chr10 ENSEMBL gene 88585638 88585733 96.0 - 0 ENSG00000201548.1 misc_RNA RF00019 3 +12872 chr10 HAVANA gene 88586753 88606976 4528.0 + 0 ENSG00000204022.9 protein_coding LIPJ 2 OTTHUMG00000018691.3 +12873 chr10 HAVANA gene 88618223 88618934 712.0 - 0 ENSG00000237205.1 processed_pseudogene RPL7P34 1 OTTHUMG00000018690.1 pseudo_consens +12874 chr10 HAVANA gene 88664441 88678814 2348.0 + 0 ENSG00000182333.14 protein_coding LIPF 2 OTTHUMG00000018695.2 +12875 chr10 HAVANA gene 88699683 88700401 719.0 + 0 ENSG00000271408.1 processed_pseudogene NAPGP1 1 OTTHUMG00000184643.1 pseudo_consens +12876 chr10 HAVANA gene 88727485 88728914 1430.0 + 0 ENSG00000226358.1 processed_pseudogene KRT8P38 1 OTTHUMG00000018697.1 pseudo_consens,overlapping_locus +12877 chr10 HAVANA gene 88724544 88752786 1230.0 + 0 ENSG00000204021.3 protein_coding LIPK 2 OTTHUMG00000018693.2 overlapping_locus +12878 chr10 HAVANA gene 88761406 88778242 1197.0 + 0 ENSG00000204020.5 protein_coding LIPN 2 OTTHUMG00000018694.3 +12879 chr10 HAVANA gene 88785600 88787061 1462.0 - 0 ENSG00000235150.1 processed_pseudogene RCBTB2P1 1 OTTHUMG00000018696.1 pseudo_consens +12880 chr10 HAVANA gene 88802730 88820546 1511.0 + 0 ENSG00000173239.13 protein_coding LIPM 2 OTTHUMG00000018698.4 +12881 chr10 HAVANA gene 88822132 88851818 1733.0 - 0 ENSG00000152766.5 protein_coding ANKRD22 2 OTTHUMG00000018699.1 +12882 chr10 HAVANA gene 88876450 88877544 1095.0 + 0 ENSG00000234256.2 processed_pseudogene PTCD2P2 1 OTTHUMG00000018704.2 pseudo_consens +12883 chr10 HAVANA gene 88932390 88940820 3183.0 + 0 ENSG00000180139.11 antisense ACTA2-AS1 2 OTTHUMG00000018703.6 overlapping_locus +12884 chr10 HAVANA gene 88879734 88975153 6323.0 + 0 ENSG00000138134.11 protein_coding STAMBPL1 2 OTTHUMG00000018702.1 overlapping_locus +12885 chr10 HAVANA gene 88935074 88991339 2976.0 - 0 ENSG00000107796.13 protein_coding ACTA2 2 OTTHUMG00000018700.2 +12886 chr10 ENSEMBL gene 88992370 88992539 170.0 + 0 ENSG00000275693.1 misc_RNA RF02116 3 +12887 chr10 HAVANA gene 88990582 89015785 4253.0 + 0 ENSG00000026103.21 protein_coding FAS 1 OTTHUMG00000018701.8 ncRNA_host +12888 chr10 HAVANA gene 89015836 89017059 1224.0 + 0 ENSG00000261438.1 sense_overlapping AL157394.1 2 OTTHUMG00000186457.1 +12889 chr10 ENSEMBL gene 89063336 89063410 75.0 + 0 ENSG00000283664.1 miRNA MIR4679-1 3 +12890 chr10 ENSEMBL gene 89063335 89063411 77.0 - 0 ENSG00000265375.1 miRNA MIR4679-2 3 +12891 chr10 HAVANA gene 89139044 89139458 415.0 + 0 ENSG00000233292.1 processed_pseudogene AL513533.1 1 OTTHUMG00000018706.1 pseudo_consens +12892 chr10 HAVANA gene 89205629 89207314 1686.0 - 0 ENSG00000138135.6 protein_coding CH25H 2 OTTHUMG00000018705.1 +12893 chr10 HAVANA gene 89283765 89292125 1012.0 + 0 ENSG00000232110.7 antisense AL353751.1 1 OTTHUMG00000018710.2 overlapping_locus +12894 chr10 HAVANA gene 89283694 89309276 4101.0 + 0 ENSG00000119922.9 protein_coding IFIT2 2 OTTHUMG00000018707.2 overlapping_locus +12895 chr10 HAVANA gene 89327894 89340971 2640.0 + 0 ENSG00000119917.13 protein_coding IFIT3 2 OTTHUMG00000018708.1 +12896 chr10 HAVANA gene 89362294 89363487 1194.0 + 0 ENSG00000224289.1 unprocessed_pseudogene IFIT6P 2 OTTHUMG00000018711.1 +12897 chr10 HAVANA gene 89378056 89385205 1972.0 + 0 ENSG00000204010.3 protein_coding IFIT1B 2 OTTHUMG00000018709.3 +12898 chr10 HAVANA gene 89392546 89406486 4613.0 + 0 ENSG00000185745.9 protein_coding IFIT1 2 OTTHUMG00000018712.1 +12899 chr10 HAVANA gene 89213569 89414557 4910.0 - 0 ENSG00000107798.17 protein_coding LIPA 2 OTTHUMG00000018716.3 +12900 chr10 HAVANA gene 89414586 89421001 4015.0 + 0 ENSG00000152778.8 protein_coding IFIT5 2 OTTHUMG00000018713.1 +12901 chr10 HAVANA gene 89456064 89468140 690.0 + 0 ENSG00000234452.5 antisense SLC16A12-AS1 1 OTTHUMG00000018715.1 +12902 chr10 HAVANA gene 89430299 89556641 4835.0 - 0 ENSG00000152779.13 protein_coding SLC16A12 2 OTTHUMG00000018714.5 +12903 chr10 ENSEMBL gene 89592747 89592827 81.0 - 0 ENSG00000198997.2 miRNA MIR107 3 +12904 chr10 HAVANA gene 89644603 89645223 621.0 - 0 ENSG00000249962.1 processed_pseudogene AL157400.5 2 OTTHUMG00000018721.1 +12905 chr10 HAVANA gene 89579497 89645572 7638.0 - 0 ENSG00000152782.16 protein_coding PANK1 2 OTTHUMG00000018718.1 ncRNA_host +12906 chr10 HAVANA gene 89645282 89650667 605.0 + 0 ENSG00000232936.5 antisense AL157400.2 2 OTTHUMG00000018719.1 +12907 chr10 HAVANA gene 89646289 89650822 368.0 - 0 ENSG00000225836.1 lincRNA AL157400.1 1 OTTHUMG00000018722.1 +12908 chr10 HAVANA gene 89694295 89697928 667.0 - 0 ENSG00000240996.1 lincRNA AL157400.4 2 OTTHUMG00000018723.1 overlapping_locus +12909 chr10 HAVANA gene 89667181 89699671 1298.0 - 0 ENSG00000235100.3 lincRNA AL157400.3 2 OTTHUMG00000184077.1 overlapping_locus +12910 chr10 HAVANA gene 89701610 89774939 6851.0 + 0 ENSG00000138182.14 protein_coding KIF20B 2 OTTHUMG00000018725.2 +12911 chr10 HAVANA gene 89786610 89787107 498.0 + 0 ENSG00000283578.1 processed_pseudogene MTND5P42 2 OTTHUMG00000191790.1 +12912 chr10 HAVANA gene 89837612 89839334 1723.0 - 0 ENSG00000270670.1 processed_pseudogene MARK2P16 1 OTTHUMG00000184689.1 pseudo_consens +12913 chr10 HAVANA gene 89829510 89840861 4272.0 + 0 ENSG00000232229.5 lincRNA LINC00865 2 OTTHUMG00000018726.1 +12914 chr10 HAVANA gene 89853906 89914948 415.0 + 0 ENSG00000280560.1 lincRNA LINC01374 2 OTTHUMG00000189507.1 +12915 chr10 HAVANA gene 89915489 89957373 1860.0 - 0 ENSG00000226159.1 lincRNA LINC01375 2 OTTHUMG00000018728.1 +12916 chr10 HAVANA gene 89978717 89979070 354.0 + 0 ENSG00000228938.3 processed_pseudogene SNRPD2P1 1 OTTHUMG00000018727.1 pseudo_consens +12917 chr10 ENSEMBL gene 90163651 90163960 310.0 - 0 ENSG00000222451.1 misc_RNA RN7SKP143 3 +12918 chr10 HAVANA gene 90462717 90467952 831.0 + 0 ENSG00000238291.1 lincRNA AL391704.3 2 OTTHUMG00000018730.1 overlapping_locus +12919 chr10 HAVANA gene 90454170 90502968 3425.0 + 0 ENSG00000224750.6 lincRNA AL391704.1 2 OTTHUMG00000018729.1 overlapping_locus +12920 chr10 HAVANA gene 90402521 90540805 981.0 - 0 ENSG00000236373.1 lincRNA AL391704.2 2 OTTHUMG00000018731.1 +12921 chr10 HAVANA gene 90622143 90623611 1469.0 - 0 ENSG00000283053.1 lincRNA AL390862.1 2 OTTHUMG00000191588.1 +12922 chr10 HAVANA gene 90740823 90857698 3131.0 - 0 ENSG00000148680.15 protein_coding HTR7 2 OTTHUMG00000018732.1 +12923 chr10 ENSEMBL gene 90880040 90880179 140.0 - 0 ENSG00000222305.1 misc_RNA RF00019 3 +12924 chr10 HAVANA gene 90871716 90908553 4653.0 + 0 ENSG00000148688.13 protein_coding RPP30 2 OTTHUMG00000018733.2 +12925 chr10 HAVANA gene 90912096 90921276 1979.0 - 0 ENSG00000148677.6 protein_coding ANKRD1 2 OTTHUMG00000018734.1 +12926 chr10 ENSEMBL gene 90922731 90922835 105.0 - 0 ENSG00000201604.1 snRNA RNU6-740P 3 +12927 chr10 HAVANA gene 90997480 90997713 234.0 - 0 ENSG00000273124.1 lincRNA AL365434.2 2 OTTHUMG00000186459.1 +12928 chr10 HAVANA gene 90994620 91006390 380.0 + 0 ENSG00000225519.1 lincRNA AL365434.1 1 OTTHUMG00000018736.1 +12929 chr10 HAVANA gene 91053051 91055047 1997.0 + 0 ENSG00000220585.4 processed_pseudogene DDX18P6 1 OTTHUMG00000018735.1 pseudo_consens,overlapping_locus +12930 chr10 HAVANA gene 91033157 91062164 1000.0 + 0 ENSG00000224851.2 lincRNA LINC00502 2 OTTHUMG00000018738.3 overlapping_locus +12931 chr10 HAVANA gene 91152605 91153349 745.0 - 0 ENSG00000234043.3 processed_pseudogene NUDT9P1 1 OTTHUMG00000018739.1 pseudo_consens +12932 chr10 HAVANA gene 91163012 91284331 8306.0 + 0 ENSG00000180628.14 protein_coding PCGF5 2 OTTHUMG00000018740.1 +12933 chr10 HAVANA gene 91464578 91464708 131.0 - 0 ENSG00000271385.1 processed_pseudogene AL161798.1 1 OTTHUMG00000184687.1 pseudo_consens +12934 chr10 HAVANA gene 91409280 91514829 11550.0 + 0 ENSG00000165338.16 protein_coding HECTD2 2 OTTHUMG00000018742.6 +12935 chr10 HAVANA gene 91544852 91545098 247.0 + 0 ENSG00000223876.1 processed_pseudogene RPS27P1 1 OTTHUMG00000018741.1 pseudo_consens +12936 chr10 HAVANA gene 91628442 91633054 2524.0 - 0 ENSG00000119938.8 protein_coding PPP1R3C 2 OTTHUMG00000018745.1 +12937 chr10 HAVANA gene 91666780 91667782 1003.0 - 0 ENSG00000213449.2 processed_pseudogene GAPDHP28 1 OTTHUMG00000018746.1 pseudo_consens +12938 chr10 HAVANA gene 91765899 91767196 1298.0 - 0 ENSG00000228759.1 processed_pseudogene FAF2P1 1 OTTHUMG00000018749.1 pseudo_consens +12939 chr10 HAVANA gene 91782839 91798291 761.0 - 0 ENSG00000228701.1 antisense TNKS2-AS1 1 OTTHUMG00000018750.1 +12940 chr10 HAVANA gene 91807179 91807439 261.0 - 0 ENSG00000180581.7 processed_pseudogene SRP9P1 2 OTTHUMG00000040029.1 +12941 chr10 HAVANA gene 91798312 91865276 6157.0 + 0 ENSG00000107854.5 protein_coding TNKS2 2 OTTHUMG00000018747.1 +12942 chr10 HAVANA gene 91896704 91896897 194.0 + 0 ENSG00000273497.1 unprocessed_pseudogene AL359198.2 2 OTTHUMG00000187854.1 +12943 chr10 HAVANA gene 91908131 91909348 571.0 + 0 ENSG00000272817.1 antisense AL359198.1 2 OTTHUMG00000186460.1 +12944 chr10 HAVANA gene 91906589 91909483 2545.0 - 0 ENSG00000174721.9 protein_coding FGFBP3 2 OTTHUMG00000018751.1 +12945 chr10 HAVANA gene 91923769 92030325 7582.0 + 0 ENSG00000095564.13 protein_coding BTAF1 2 OTTHUMG00000018752.5 +12946 chr10 ENSEMBL gene 92076242 92076365 124.0 + 0 ENSG00000252993.1 snoRNA RF00402 3 +12947 chr10 HAVANA gene 92118664 92119164 501.0 + 0 ENSG00000214549.2 processed_pseudogene SDHCP2 1 OTTHUMG00000018753.1 pseudo_consens +12948 chr10 HAVANA gene 92136875 92138370 1190.0 + 0 ENSG00000213484.2 processed_pseudogene EIF4A1P8 1 OTTHUMG00000018754.1 pseudo_consens +12949 chr10 ENSEMBL gene 92204229 92204306 78.0 - 0 ENSG00000221042.1 ribozyme RF00622 3 +12950 chr10 HAVANA gene 92216332 92216793 462.0 + 0 ENSG00000105988.6 processed_pseudogene NHP2P1 2 OTTHUMG00000018755.1 +12951 chr10 ENSEMBL gene 92272147 92272250 104.0 - 0 ENSG00000199881.1 misc_RNA RF00019 3 +12952 chr10 HAVANA gene 92046692 92291087 7928.0 - 0 ENSG00000107864.14 protein_coding CPEB3 2 OTTHUMG00000018756.4 ncRNA_host +12953 chr10 ENSEMBL gene 92334463 92334564 102.0 + 0 ENSG00000202297.1 misc_RNA RNY3P12 3 +12954 chr10 HAVANA gene 92291163 92353964 4632.0 + 0 ENSG00000198060.9 protein_coding MARCH5 2 OTTHUMG00000018757.2 ncRNA_host +12955 chr10 HAVANA gene 92418667 92420875 1727.0 + 0 ENSG00000232709.1 processed_pseudogene MARK2P9 1 OTTHUMG00000018758.1 pseudo_consens +12956 chr10 HAVANA gene 92451684 92574076 7607.0 - 0 ENSG00000119912.16 protein_coding IDE 2 OTTHUMG00000018759.5 +12957 chr10 HAVANA gene 92596852 92597287 436.0 - 0 ENSG00000184111.6 processed_pseudogene RPL11P4 1 OTTHUMG00000018760.2 pseudo_consens +12958 chr10 HAVANA gene 92593286 92655395 4860.0 + 0 ENSG00000138160.5 protein_coding KIF11 2 OTTHUMG00000018761.2 +12959 chr10 ENSEMBL gene 92659044 92659302 259.0 + 0 ENSG00000264313.2 misc_RNA RN7SL644P 3 +12960 chr10 HAVANA gene 92668745 92669743 999.0 - 0 ENSG00000236493.2 processed_pseudogene EIF2S2P3 1 OTTHUMG00000018763.3 pseudo_consens +12961 chr10 HAVANA gene 92689951 92695646 2525.0 + 0 ENSG00000152804.10 protein_coding HHEX 1 OTTHUMG00000018762.3 +12962 chr10 ENSEMBL gene 92710499 92710608 110.0 - 0 ENSG00000201412.1 misc_RNA RF00019 3 +12963 chr10 HAVANA gene 92878092 92878289 198.0 - 0 ENSG00000225118.1 processed_pseudogene AL392103.1 2 OTTHUMG00000018764.2 +12964 chr10 HAVANA gene 92834713 93059493 6193.0 + 0 ENSG00000138190.16 protein_coding EXOC6 2 OTTHUMG00000018767.5 +12965 chr10 HAVANA gene 93059663 93060426 442.0 - 0 ENSG00000226425.1 antisense AL358613.1 1 OTTHUMG00000018768.1 +12966 chr10 HAVANA gene 93060808 93069536 4364.0 + 0 ENSG00000187553.8 protein_coding CYP26C1 2 OTTHUMG00000018766.4 overlapping_locus +12967 chr10 HAVANA gene 93071972 93073466 567.0 + 0 ENSG00000279607.1 lincRNA AL358613.2 2 OTTHUMG00000189113.1 +12968 chr10 HAVANA gene 93063646 93077424 1641.0 + 0 ENSG00000285846.1 processed_transcript AL358613.3 2 OTTHUMG00000193377.1 overlapping_locus +12969 chr10 HAVANA gene 93073475 93077890 2972.0 + 0 ENSG00000095596.11 protein_coding CYP26A1 2 OTTHUMG00000018765.4 overlapping_locus +12970 chr10 HAVANA gene 93106872 93107383 512.0 - 0 ENSG00000232805.1 processed_pseudogene NIP7P1 1 OTTHUMG00000018769.1 pseudo_consens +12971 chr10 HAVANA gene 93206857 93209627 1805.0 - 0 ENSG00000237417.1 processed_pseudogene XRCC6P1 1 OTTHUMG00000018770.1 pseudo_consens +12972 chr10 HAVANA gene 93284004 93284558 555.0 - 0 ENSG00000213432.2 processed_pseudogene RPL17P34 1 OTTHUMG00000018771.2 pseudo_consens +12973 chr10 HAVANA gene 93306429 93482317 8473.0 - 0 ENSG00000138119.16 protein_coding MYOF 2 OTTHUMG00000018772.5 +12974 chr10 ENSEMBL gene 93510548 93510680 133.0 - 0 ENSG00000212396.1 rRNA_pseudogene RNA5SP323 3 +12975 chr10 HAVANA gene 93496632 93529092 3271.0 + 0 ENSG00000138180.15 protein_coding CEP55 2 OTTHUMG00000018774.1 +12976 chr10 HAVANA gene 93591687 93601744 1449.0 - 0 ENSG00000138207.13 protein_coding RBP4 2 OTTHUMG00000018773.2 +12977 chr10 HAVANA gene 93566665 93604480 4060.0 + 0 ENSG00000186188.10 protein_coding FFAR4 2 OTTHUMG00000034409.2 +12978 chr10 HAVANA gene 93612588 93666010 3310.0 + 0 ENSG00000095464.9 protein_coding PDE6C 2 OTTHUMG00000018775.2 +12979 chr10 HAVANA gene 93667883 93702572 8142.0 - 0 ENSG00000148690.11 protein_coding FRA10AC1 2 OTTHUMG00000018776.1 +12980 chr10 HAVANA gene 93762453 93771991 8444.0 + 0 ENSG00000280660.1 sense_intronic AL157396.1 2 OTTHUMG00000189680.1 +12981 chr10 HAVANA gene 93772681 93788605 444.0 - 0 ENSG00000280485.1 antisense AL358154.1 2 OTTHUMG00000189688.1 +12982 chr10 HAVANA gene 93757809 93806272 11108.0 + 0 ENSG00000108231.12 protein_coding LGI1 2 OTTHUMG00000018777.7 +12983 chr10 HAVANA gene 93881293 93881938 646.0 - 0 ENSG00000227995.1 processed_pseudogene RAB11AP1 1 OTTHUMG00000018778.1 pseudo_consens +12984 chr10 HAVANA gene 93893973 93956062 6829.0 + 0 ENSG00000176273.14 protein_coding SLC35G1 2 OTTHUMG00000018779.3 +12985 chr10 HAVANA gene 93958191 93961540 3350.0 - 0 ENSG00000180764.13 transcribed_processed_pseudogene PIPSL 1 OTTHUMG00000137480.3 pseudo_consens +12986 chr10 HAVANA gene 94081950 94108814 4248.0 - 0 ENSG00000232913.8 antisense PLCE1-AS2 2 OTTHUMG00000018783.5 +12987 chr10 HAVANA gene 94109116 94121107 446.0 + 0 ENSG00000231575.1 sense_intronic AL139118.1 2 OTTHUMG00000018782.1 overlapping_locus +12988 chr10 HAVANA gene 94137748 94139500 1445.0 + 0 ENSG00000234724.1 processed_pseudogene HDAC1P1 1 OTTHUMG00000018784.1 pseudo_consens,overlapping_locus +12989 chr10 ENSEMBL gene 94155639 94155745 107.0 - 0 ENSG00000206631.1 snRNA RNU6-657P 3 +12990 chr10 HAVANA gene 94225160 94227288 384.0 - 0 ENSG00000228553.1 antisense AL389885.1 2 OTTHUMG00000018785.1 +12991 chr10 HAVANA gene 94279277 94287478 2317.0 - 0 ENSG00000268894.6 antisense PLCE1-AS1 2 OTTHUMG00000018787.5 +12992 chr10 HAVANA gene 94314907 94315327 421.0 - 0 ENSG00000273450.1 antisense AL139124.1 2 OTTHUMG00000186461.1 +12993 chr10 HAVANA gene 94030812 94332823 12930.0 + 0 ENSG00000138193.15 protein_coding PLCE1 2 OTTHUMG00000018789.3 overlapping_locus +12994 chr10 HAVANA gene 94333226 94362959 4464.0 - 0 ENSG00000173145.11 protein_coding NOC3L 2 OTTHUMG00000018788.1 +12995 chr10 HAVANA gene 94402504 94535930 6921.0 + 0 ENSG00000108239.8 protein_coding TBC1D12 2 OTTHUMG00000018794.2 +12996 chr10 HAVANA gene 94577439 94611238 645.0 + 0 ENSG00000244332.1 sense_overlapping AL138759.1 2 OTTHUMG00000018792.1 overlapping_locus +12997 chr10 HAVANA gene 94501434 94613905 10148.0 + 0 ENSG00000119969.14 protein_coding HELLS 1 OTTHUMG00000018793.2 overlapping_locus +12998 chr10 HAVANA gene 94646364 94647996 1334.0 - 0 ENSG00000235746.1 processed_pseudogene CTBP2P2 1 OTTHUMG00000018790.1 pseudo_consens +12999 chr10 HAVANA gene 94683621 94736190 2418.0 + 0 ENSG00000108242.12 protein_coding CYP2C18 2 OTTHUMG00000018796.2 overlapping_locus +13000 chr10 HAVANA gene 94774156 94774633 478.0 - 0 ENSG00000230338.1 processed_pseudogene MTND4P19 2 OTTHUMG00000018795.1 +13001 chr10 HAVANA gene 94688154 94853073 2395.0 + 0 ENSG00000276490.1 protein_coding AL583836.1 2 OTTHUMG00000188303.1 overlapping_locus +13002 chr10 HAVANA gene 94762681 94853205 3921.0 + 0 ENSG00000165841.10 protein_coding CYP2C19 2 OTTHUMG00000018799.4 overlapping_locus +13003 chr10 HAVANA gene 94865852 94873129 475.0 - 0 ENSG00000235199.1 processed_pseudogene CYP2C58P 2 OTTHUMG00000018797.1 +13004 chr10 HAVANA gene 94882554 94883343 790.0 + 0 ENSG00000225354.1 processed_pseudogene RPL7AP52 1 OTTHUMG00000018798.1 pseudo_consens +13005 chr10 HAVANA gene 94940253 94941121 869.0 - 0 ENSG00000233377.1 processed_pseudogene MTND4P20 2 OTTHUMG00000018801.2 +13006 chr10 HAVANA gene 94938658 94989391 3358.0 + 0 ENSG00000138109.10 protein_coding CYP2C9 2 OTTHUMG00000018805.2 +13007 chr10 HAVANA gene 95007126 95007556 269.0 - 0 ENSG00000228460.1 unprocessed_pseudogene CYP2C59P 2 OTTHUMG00000018802.1 +13008 chr10 HAVANA gene 95009674 95009812 139.0 + 0 ENSG00000260863.1 unprocessed_pseudogene CYP2C60P 2 OTTHUMG00000172690.1 +13009 chr10 HAVANA gene 95031640 95032048 409.0 + 0 ENSG00000237885.1 processed_pseudogene AL359672.1 2 OTTHUMG00000018803.1 +13010 chr10 HAVANA gene 95036772 95069497 2571.0 - 0 ENSG00000138115.13 protein_coding CYP2C8 2 OTTHUMG00000018804.3 +13011 chr10 HAVANA gene 95141925 95168425 420.0 - 0 ENSG00000231829.2 lincRNA AL157834.1 2 OTTHUMG00000018806.2 +13012 chr10 HAVANA gene 95173085 95173187 103.0 - 0 ENSG00000274691.1 unprocessed_pseudogene AL157834.3 2 OTTHUMG00000187856.1 +13013 chr10 HAVANA gene 95183653 95184217 565.0 + 0 ENSG00000225533.1 processed_pseudogene PAWRP1 1 OTTHUMG00000018807.1 pseudo_consens +13014 chr10 HAVANA gene 95194200 95228928 2807.0 + 0 ENSG00000173124.14 protein_coding ACSM6 2 OTTHUMG00000018808.2 +13015 chr10 HAVANA gene 95228243 95231144 663.0 - 0 ENSG00000234026.1 antisense AL157834.2 1 OTTHUMG00000018809.1 +13016 chr10 HAVANA gene 95237572 95291024 2239.0 - 0 ENSG00000107438.8 protein_coding PDLIM1 2 OTTHUMG00000018810.1 +13017 chr10 HAVANA gene 95311771 95561414 10819.0 - 0 ENSG00000095637.22 protein_coding SORBS1 2 OTTHUMG00000018812.10 +13018 chr10 HAVANA gene 95594598 95595372 775.0 + 0 ENSG00000214362.2 processed_pseudogene RPS3AP36 1 OTTHUMG00000018816.1 pseudo_consens +13019 chr10 HAVANA gene 95605929 95656706 3766.0 - 0 ENSG00000059573.8 protein_coding ALDH18A1 2 OTTHUMG00000018815.2 +13020 chr10 HAVANA gene 95663396 95694143 3223.0 - 0 ENSG00000119977.20 protein_coding TCTN3 2 OTTHUMG00000018814.6 +13021 chr10 HAVANA gene 95711779 95869695 6975.0 + 0 ENSG00000138185.19 protein_coding ENTPD1 2 OTTHUMG00000018818.7 overlapping_locus +13022 chr10 HAVANA gene 95833508 95873758 587.0 + 0 ENSG00000240527.1 sense_intronic AL365273.1 2 OTTHUMG00000018817.1 overlapping_locus +13023 chr10 HAVANA gene 95860548 95924844 492.0 + 0 ENSG00000270099.1 protein_coding AL365273.2 2 OTTHUMG00000184157.1 overlapping_locus +13024 chr10 HAVANA gene 95999778 96000243 466.0 - 0 ENSG00000227805.1 processed_pseudogene RPL21P90 1 OTTHUMG00000018821.1 pseudo_consens,overlapping_locus +13025 chr10 HAVANA gene 95907603 96032684 6494.0 + 0 ENSG00000188649.13 protein_coding CC2D2B 1 OTTHUMG00000191767.3 +13026 chr10 HAVANA gene 96043394 96060870 4148.0 + 0 ENSG00000107443.15 protein_coding CCNJ 2 OTTHUMG00000018823.7 +13027 chr10 ENSEMBL gene 96064315 96064399 85.0 - 0 ENSG00000266407.1 miRNA MIR3157 3 +13028 chr10 HAVANA gene 95753206 96090238 12528.0 - 0 ENSG00000226688.6 antisense ENTPD1-AS1 2 OTTHUMG00000018822.2 ncRNA_host,overlapping_locus +13029 chr10 ENSEMBL gene 96112747 96112851 105.0 + 0 ENSG00000200728.1 snRNA RNU6-271P 3 +13030 chr10 HAVANA gene 96189366 96190219 854.0 - 0 ENSG00000229417.1 processed_pseudogene NPM1P25 1 OTTHUMG00000018826.1 pseudo_consens +13031 chr10 HAVANA gene 96129715 96205288 10891.0 + 0 ENSG00000177853.14 protein_coding ZNF518A 2 OTTHUMG00000018828.7 +13032 chr10 HAVANA gene 96191702 96271587 3655.0 - 0 ENSG00000095585.16 protein_coding BLNK 2 OTTHUMG00000018827.3 +13033 chr10 HAVANA gene 96292685 96306695 1924.0 - 0 ENSG00000229418.2 antisense AL136181.1 2 OTTHUMG00000018829.2 +13034 chr10 HAVANA gene 96304396 96338564 1972.0 + 0 ENSG00000107447.7 protein_coding DNTT 2 OTTHUMG00000018832.2 +13035 chr10 HAVANA gene 96343216 96359365 3879.0 - 0 ENSG00000197430.10 protein_coding OPALIN 2 OTTHUMG00000018831.1 +13036 chr10 HAVANA gene 96364606 96513918 8151.0 - 0 ENSG00000095587.8 protein_coding TLL2 2 OTTHUMG00000018833.2 +13037 chr10 HAVANA gene 96560185 96560922 738.0 + 0 ENSG00000235677.1 processed_pseudogene NPM1P26 1 OTTHUMG00000018835.1 pseudo_consens +13038 chr10 HAVANA gene 96518109 96587452 7095.0 - 0 ENSG00000077147.15 protein_coding TM9SF3 2 OTTHUMG00000018834.5 +13039 chr10 ENSEMBL gene 96619376 96619483 108.0 + 0 ENSG00000202047.1 rRNA_pseudogene RNA5SP324 3 +13040 chr10 HAVANA gene 96620877 96621707 831.0 - 0 ENSG00000227032.1 processed_pseudogene RPS2P36 1 OTTHUMG00000018836.1 pseudo_consens,overlapping_locus +13041 chr10 HAVANA gene 96593312 96720514 5691.0 - 0 ENSG00000155629.14 protein_coding PIK3AP1 2 OTTHUMG00000018838.2 overlapping_locus +13042 chr10 ENSEMBL gene 96743167 96743273 107.0 + 0 ENSG00000207287.1 snRNA RNU6-1274P 3 +13043 chr10 HAVANA gene 96750288 96750899 612.0 + 0 ENSG00000236552.2 processed_pseudogene RPL13AP5 2 OTTHUMG00000018837.1 +13044 chr10 ENSEMBL gene 96828669 96828764 96.0 - 0 ENSG00000207976.1 miRNA MIR607 3 +13045 chr10 HAVANA gene 96915633 96915902 270.0 - 0 ENSG00000232875.1 processed_pseudogene HMGN2P35 2 OTTHUMG00000018839.1 +13046 chr10 HAVANA gene 96832282 96995959 26020.0 + 0 ENSG00000196233.13 protein_coding LCOR 2 OTTHUMG00000018841.5 +13047 chr10 HAVANA gene 97102756 97103747 689.0 + 0 ENSG00000234855.1 antisense SLIT1-AS1 2 OTTHUMG00000018842.1 +13048 chr10 HAVANA gene 96998038 97185920 9103.0 - 0 ENSG00000187122.16 protein_coding SLIT1 2 OTTHUMG00000018843.4 overlapping_locus +13049 chr10 HAVANA gene 97275012 97278097 365.0 + 0 ENSG00000231398.1 processed_pseudogene AL359385.1 1 OTTHUMG00000018844.1 pseudo_consens +13050 chr10 HAVANA gene 97153045 97292637 4089.0 - 0 ENSG00000269891.2 protein_coding ARHGAP19-SLIT1 2 OTTHUMG00000184018.1 overlapping_locus +13051 chr10 HAVANA gene 97222173 97292673 6167.0 - 0 ENSG00000213390.10 protein_coding ARHGAP19 2 OTTHUMG00000018845.7 overlapping_locus +13052 chr10 ENSEMBL gene 97297290 97297557 268.0 + 0 ENSG00000277308.1 misc_RNA RF00017 3 +13053 chr10 HAVANA gene 97309138 97309958 496.0 - 0 ENSG00000237169.1 processed_pseudogene RPL12P27 1 OTTHUMG00000018849.1 pseudo_consens +13054 chr10 HAVANA gene 97319267 97321915 2649.0 + 0 ENSG00000165879.8 protein_coding FRAT1 2 OTTHUMG00000018848.1 +13055 chr10 HAVANA gene 97332497 97334709 2213.0 - 0 ENSG00000181274.6 protein_coding FRAT2 2 OTTHUMG00000018850.2 +13056 chr10 HAVANA gene 97334564 97343203 805.0 + 0 ENSG00000225850.3 bidirectional_promoter_lncRNA AL355490.1 1 OTTHUMG00000018851.3 +13057 chr10 HAVANA gene 97393197 97393547 351.0 - 0 ENSG00000231508.1 processed_pseudogene RPL34P20 1 OTTHUMG00000018852.1 pseudo_consens,overlapping_locus +13058 chr10 HAVANA gene 97401115 97419524 548.0 + 0 ENSG00000231970.1 antisense AL355490.2 2 OTTHUMG00000018853.1 +13059 chr10 ENSEMBL gene 97421195 97421307 113.0 - 0 ENSG00000200737.1 misc_RNA RF00019 3 +13060 chr10 HAVANA gene 97356358 97426076 8529.0 - 0 ENSG00000052749.13 protein_coding RRP12 2 OTTHUMG00000018855.7 ncRNA_host,overlapping_locus +13061 chr10 HAVANA gene 97426160 97433441 2568.0 + 0 ENSG00000171314.8 protein_coding PGAM1 2 OTTHUMG00000018846.2 +13062 chr10 HAVANA gene 97436142 97446017 3345.0 - 0 ENSG00000171311.12 protein_coding EXOSC1 2 OTTHUMG00000018854.3 +13063 chr10 HAVANA gene 97446131 97457370 3078.0 + 0 ENSG00000171307.18 protein_coding ZDHHC16 2 OTTHUMG00000018847.4 +13064 chr10 HAVANA gene 97458324 97498794 5849.0 - 0 ENSG00000155229.20 protein_coding MMS19 2 OTTHUMG00000018857.5 +13065 chr10 HAVANA gene 97498868 97571209 1706.0 + 0 ENSG00000165886.4 protein_coding UBTD1 2 OTTHUMG00000018856.1 +13066 chr10 HAVANA gene 97572499 97583884 1451.0 + 0 ENSG00000165887.11 protein_coding ANKRD2 2 OTTHUMG00000018860.1 +13067 chr10 HAVANA gene 97589727 97590934 1208.0 + 0 ENSG00000203942.4 protein_coding C10orf62 2 OTTHUMG00000018858.1 overlapping_locus +13068 chr10 HAVANA gene 97584323 97612802 4148.0 + 0 ENSG00000241935.8 protein_coding HOGA1 2 OTTHUMG00000018859.4 overlapping_locus +13069 chr10 HAVANA gene 97614553 97633500 2512.0 - 0 ENSG00000171160.17 protein_coding MORN4 1 OTTHUMG00000018861.3 +13070 chr10 HAVANA gene 97584374 97673910 1848.0 + 0 ENSG00000249967.1 protein_coding AL355315.1 2 OTTHUMG00000162272.1 overlapping_locus +13071 chr10 HAVANA gene 97640686 97676434 4189.0 + 0 ENSG00000155252.13 protein_coding PI4K2A 2 OTTHUMG00000018863.1 overlapping_locus +13072 chr10 HAVANA gene 97677424 97687323 1457.0 - 0 ENSG00000119986.6 protein_coding AVPI1 2 OTTHUMG00000018864.1 +13073 chr10 HAVANA gene 97713173 97718152 3379.0 + 0 ENSG00000155254.12 protein_coding MARVELD1 2 OTTHUMG00000018865.6 +13074 chr10 HAVANA gene 97737121 97760907 3899.0 + 0 ENSG00000155256.17 protein_coding ZFYVE27 2 OTTHUMG00000018867.6 +13075 chr10 HAVANA gene 97766751 97771952 1836.0 - 0 ENSG00000120057.4 protein_coding SFRP5 2 OTTHUMG00000018866.1 +13076 chr10 HAVANA gene 97828478 97849798 418.0 - 0 ENSG00000227356.2 lincRNA LINC00866 2 OTTHUMG00000018868.2 +13077 chr10 HAVANA gene 97850239 97871580 6458.0 + 0 ENSG00000155265.10 protein_coding GOLGA7B 2 OTTHUMG00000018869.2 +13078 chr10 HAVANA gene 97865000 98030828 3553.0 - 0 ENSG00000095713.13 protein_coding CRTAC1 1 OTTHUMG00000018871.1 +13079 chr10 ENSEMBL gene 98076361 98076421 61.0 - 0 ENSG00000278752.1 misc_RNA AL355301.1 3 +13080 chr10 HAVANA gene 98134624 98244897 3571.0 + 0 ENSG00000166024.13 protein_coding R3HCC1L 2 OTTHUMG00000018873.1 +13081 chr10 HAVANA gene 98252023 98256575 1168.0 + 0 ENSG00000230928.1 antisense AL139241.1 2 OTTHUMG00000018875.1 +13082 chr10 HAVANA gene 98247690 98268250 3653.0 - 0 ENSG00000138131.3 protein_coding LOXL4 2 OTTHUMG00000018874.1 +13083 chr10 ENSEMBL gene 98395218 98395307 90.0 - 0 ENSG00000284415.1 miRNA MIR1287 3 +13084 chr10 HAVANA gene 98383565 98415184 3867.0 - 0 ENSG00000119943.12 protein_coding PYROXD2 2 OTTHUMG00000018877.3 ncRNA_host +13085 chr10 ENSEMBL gene 98431292 98431360 69.0 - 0 ENSG00000264610.1 miRNA MIR4685 3 +13086 chr10 HAVANA gene 98416198 98446947 5301.0 - 0 ENSG00000107521.18 protein_coding HPS1 2 OTTHUMG00000018876.2 ncRNA_host +13087 chr10 ENSEMBL gene 98924499 98924568 70.0 - 0 ENSG00000274056.1 miRNA MIR6507 3 +13088 chr10 HAVANA gene 99013103 99013952 533.0 - 0 ENSG00000236818.1 processed_pseudogene ARL5AP2 1 OTTHUMG00000018878.1 pseudo_consens,overlapping_locus +13089 chr10 HAVANA gene 99047639 99048319 681.0 + 0 ENSG00000234109.1 processed_pseudogene RPL7P36 1 OTTHUMG00000018879.1 pseudo_consens +13090 chr10 HAVANA gene 98457077 99235862 4421.0 - 0 ENSG00000172987.12 protein_coding HPSE2 2 OTTHUMG00000018880.2 ncRNA_host,overlapping_locus +13091 chr10 HAVANA gene 99329099 99394330 6413.0 + 0 ENSG00000119946.10 protein_coding CNNM1 2 OTTHUMG00000018881.2 +13092 chr10 HAVANA gene 99396870 99431569 3369.0 - 0 ENSG00000120053.11 protein_coding GOT1 2 OTTHUMG00000018882.3 +13093 chr10 HAVANA gene 99430919 99461743 6898.0 + 0 ENSG00000224934.4 bidirectional_promoter_lncRNA AL391684.1 2 OTTHUMG00000018883.4 +13094 chr10 HAVANA gene 99526948 99528467 731.0 + 0 ENSG00000228778.2 lincRNA AL513542.1 1 OTTHUMG00000018885.2 +13095 chr10 HAVANA gene 99526350 99531177 914.0 - 0 ENSG00000257582.5 lincRNA LINC01475 2 OTTHUMG00000170536.1 +13096 chr10 HAVANA gene 99532933 99536524 2097.0 + 0 ENSG00000119919.10 protein_coding NKX2-3 2 OTTHUMG00000018887.3 +13097 chr10 HAVANA gene 99610522 99620609 1755.0 - 0 ENSG00000155287.10 protein_coding SLC25A28 2 OTTHUMG00000018886.2 +13098 chr10 HAVANA gene 99621055 99621918 864.0 + 0 ENSG00000260475.1 lincRNA AL353719.1 2 OTTHUMG00000176194.1 +13099 chr10 HAVANA gene 99651595 99659284 837.0 - 0 ENSG00000229278.2 bidirectional_promoter_lncRNA AL133353.1 2 OTTHUMG00000018892.2 overlapping_locus +13100 chr10 HAVANA gene 99697407 99697949 543.0 - 0 ENSG00000233690.1 processed_pseudogene EBAG9P1 1 OTTHUMG00000018890.1 pseudo_consens +13101 chr10 HAVANA gene 99659506 99706240 3657.0 + 0 ENSG00000198018.6 protein_coding ENTPD7 2 OTTHUMG00000018888.3 overlapping_locus +13102 chr10 HAVANA gene 99711844 99732100 4177.0 - 0 ENSG00000014919.12 protein_coding COX15 2 OTTHUMG00000018893.3 overlapping_locus +13103 chr10 HAVANA gene 99651595 99732112 1971.0 - 0 ENSG00000285932.1 protein_coding AL133353.2 2 OTTHUMG00000193345.2 overlapping_locus +13104 chr10 HAVANA gene 99702558 99756134 1806.0 + 0 ENSG00000119929.12 protein_coding CUTC 2 OTTHUMG00000018889.4 overlapping_locus +13105 chr10 HAVANA gene 99788564 99789410 847.0 - 0 ENSG00000227351.2 processed_pseudogene NANOGP6 1 OTTHUMG00000018891.2 pseudo_consens +13106 chr10 HAVANA gene 99782640 99852594 7837.0 + 0 ENSG00000023839.11 protein_coding ABCC2 2 OTTHUMG00000018895.7 +13107 chr10 HAVANA gene 99927010 99958381 2336.0 + 0 ENSG00000227695.5 antisense DNMBP-AS1 2 OTTHUMG00000018898.2 +13108 chr10 HAVANA gene 99875577 100009919 8461.0 - 0 ENSG00000107554.16 protein_coding DNMBP 2 OTTHUMG00000018897.4 +13109 chr10 HAVANA gene 100042193 100081877 1887.0 - 0 ENSG00000120054.11 protein_coding CPN1 2 OTTHUMG00000018896.2 +13110 chr10 HAVANA gene 100114417 100115223 807.0 - 0 ENSG00000232230.1 processed_pseudogene TPM4P1 1 OTTHUMG00000018905.1 pseudo_consens,overlapping_locus +13111 chr10 HAVANA gene 100105754 100140151 992.0 - 0 ENSG00000283232.1 unitary_pseudogene CYP2C23P 1 OTTHUMG00000191789.1 pseudo_consens,overlapping_locus +13112 chr10 HAVANA gene 100143065 100143995 608.0 - 0 ENSG00000270623.1 processed_pseudogene SPCS2P2 1 OTTHUMG00000184686.2 pseudo_consens +13113 chr10 HAVANA gene 100150094 100188334 5792.0 - 0 ENSG00000107566.13 protein_coding ERLIN1 2 OTTHUMG00000018900.3 overlapping_locus +13114 chr10 HAVANA gene 100190036 100190747 578.0 + 0 ENSG00000236308.1 antisense AL138921.2 2 OTTHUMG00000018904.1 +13115 chr10 HAVANA gene 100188298 100229619 6928.0 - 0 ENSG00000213341.10 protein_coding CHUK 2 OTTHUMG00000018899.1 overlapping_locus +13116 chr10 HAVANA gene 100229667 100234000 846.0 + 0 ENSG00000227492.1 antisense AL138921.1 2 OTTHUMG00000018903.1 +13117 chr10 ENSEMBL gene 100237156 100237302 147.0 - 0 ENSG00000212464.1 snoRNA SNORA12 3 +13118 chr10 HAVANA gene 100248271 100249095 825.0 + 0 ENSG00000230224.1 processed_pseudogene PHBP9 1 OTTHUMG00000018902.1 pseudo_consens +13119 chr10 ENSEMBL gene 100258571 100258677 107.0 + 0 ENSG00000207362.1 snRNA RNU6-422P 3 +13120 chr10 HAVANA gene 100232298 100267680 3985.0 - 0 ENSG00000095485.17 protein_coding CWF19L1 2 OTTHUMG00000018901.6 ncRNA_host +13121 chr10 HAVANA gene 100273280 100286712 2943.0 - 0 ENSG00000196072.11 protein_coding BLOC1S2 2 OTTHUMG00000018908.2 +13122 chr10 HAVANA gene 100288154 100330486 3065.0 - 0 ENSG00000107593.16 protein_coding PKD2L1 2 OTTHUMG00000018910.3 +13123 chr10 HAVANA gene 100335563 100346390 471.0 - 0 ENSG00000231188.1 antisense AL139819.1 2 OTTHUMG00000018907.1 +13124 chr10 HAVANA gene 100347124 100364834 5362.0 + 0 ENSG00000099194.5 protein_coding SCD 2 OTTHUMG00000018906.2 +13125 chr10 ENSEMBL gene 100398352 100398446 95.0 - 0 ENSG00000212325.1 misc_RNA RF00019 3 +13126 chr10 HAVANA gene 100373513 100454043 7763.0 + 0 ENSG00000235823.2 lincRNA OLMALINC 2 OTTHUMG00000018909.2 +13127 chr10 HAVANA gene 100463041 100483744 2112.0 + 0 ENSG00000075290.7 protein_coding WNT8B 2 OTTHUMG00000018912.1 +13128 chr10 HAVANA gene 100486642 100519864 7938.0 - 0 ENSG00000075826.16 protein_coding SEC31B 2 OTTHUMG00000019342.4 overlapping_locus +13129 chr10 HAVANA gene 100505628 100529881 2139.0 - 0 ENSG00000255339.6 protein_coding AL133352.1 2 OTTHUMG00000166603.1 overlapping_locus +13130 chr10 HAVANA gene 100523740 100530000 1999.0 - 0 ENSG00000166136.15 protein_coding NDUFB8 2 OTTHUMG00000019346.3 overlapping_locus +13131 chr10 HAVANA gene 100529072 100559998 13950.0 + 0 ENSG00000166135.13 protein_coding HIF1AN 2 OTTHUMG00000018911.6 +13132 chr10 ENSEMBL gene 100666695 100667009 315.0 - 0 ENSG00000274660.1 misc_RNA RF00017 3 +13133 chr10 HAVANA gene 100735603 100829941 6243.0 + 0 ENSG00000075891.21 protein_coding PAX2 2 OTTHUMG00000018913.5 +13134 chr10 ENSEMBL gene 100907174 100907280 107.0 - 0 ENSG00000222072.1 misc_RNA RF00019 3 +13135 chr10 HAVANA gene 100911103 100912739 1637.0 - 0 ENSG00000272572.1 antisense AL138762.1 2 OTTHUMG00000186470.1 +13136 chr10 HAVANA gene 100912569 100965136 9131.0 + 0 ENSG00000119906.12 protein_coding SLF2 2 OTTHUMG00000018919.6 +13137 chr10 HAVANA gene 100967688 100968135 448.0 + 0 ENSG00000273476.1 lincRNA AL133215.3 2 OTTHUMG00000186476.1 +13138 chr10 ENSEMBL gene 100974985 100975084 100.0 + 0 ENSG00000207551.1 miRNA MIR608 3 +13139 chr10 HAVANA gene 100980507 100985614 342.0 - 0 ENSG00000236662.1 antisense AL133215.1 2 OTTHUMG00000018923.1 overlapping_locus +13140 chr10 HAVANA gene 100969518 100985871 5253.0 + 0 ENSG00000095539.15 protein_coding SEMA4G 2 OTTHUMG00000018922.3 ncRNA_host +13141 chr10 HAVANA gene 100969458 100987515 3573.0 - 0 ENSG00000055950.16 protein_coding MRPL43 1 OTTHUMG00000018920.3 overlapping_locus +13142 chr10 HAVANA gene 100987367 100994401 3508.0 + 0 ENSG00000107815.9 protein_coding TWNK 2 OTTHUMG00000018917.4 +13143 chr10 HAVANA gene 100996618 101007836 6547.0 + 0 ENSG00000107816.17 protein_coding LZTS2 2 OTTHUMG00000018914.4 +13144 chr10 HAVANA gene 101007683 101032295 6609.0 - 0 ENSG00000186862.18 protein_coding PDZD7 2 OTTHUMG00000018916.6 +13145 chr10 HAVANA gene 101031234 101041244 4631.0 + 0 ENSG00000107819.13 protein_coding SFXN3 2 OTTHUMG00000018921.3 +13146 chr10 HAVANA gene 101060029 101061005 977.0 - 0 ENSG00000273162.1 lincRNA AL133215.2 2 OTTHUMG00000186479.1 +13147 chr10 HAVANA gene 101061841 101068131 3613.0 + 0 ENSG00000107821.14 protein_coding KAZALD1 2 OTTHUMG00000018918.3 +13148 chr10 HAVANA gene 101089321 101131126 1891.0 - 0 ENSG00000236311.6 lincRNA TLX1NB 1 OTTHUMG00000018925.4 +13149 chr10 HAVANA gene 101130505 101137789 3421.0 + 0 ENSG00000107807.12 protein_coding TLX1 1 OTTHUMG00000019341.6 +13150 chr10 HAVANA gene 101181144 101181951 485.0 - 0 ENSG00000270973.1 processed_pseudogene SMARCE1P7 1 OTTHUMG00000184685.1 pseudo_consens +13151 chr10 HAVANA gene 101176323 101194147 1338.0 + 0 ENSG00000237579.2 lincRNA LINC01514 2 OTTHUMG00000018926.2 +13152 chr10 HAVANA gene 101226195 101229794 2900.0 - 0 ENSG00000138136.6 protein_coding LBX1 2 OTTHUMG00000018927.4 +13153 chr10 HAVANA gene 101252821 101263550 2222.0 - 0 ENSG00000229649.1 lincRNA AL133387.2 2 OTTHUMG00000018930.1 +13154 chr10 HAVANA gene 101229594 101270148 3448.0 + 0 ENSG00000227128.4 processed_transcript LBX1-AS1 2 OTTHUMG00000170500.3 +13155 chr10 ENSEMBL gene 101307529 101307718 190.0 + 0 ENSG00000222238.1 snRNA RNU2-43P 3 +13156 chr10 HAVANA gene 101311018 101311505 382.0 + 0 ENSG00000225208.1 lincRNA AL133387.1 2 OTTHUMG00000018929.1 +13157 chr10 HAVANA gene 101322485 101323394 522.0 - 0 ENSG00000230967.2 lincRNA AL133387.3 2 OTTHUMG00000018931.2 +13158 chr10 ENSEMBL gene 101364845 101365035 191.0 - 0 ENSG00000222414.1 snRNA RNU2-59P 3 +13159 chr10 HAVANA gene 101354033 101557321 6613.0 + 0 ENSG00000166167.17 protein_coding BTRC 2 OTTHUMG00000018932.3 +13160 chr10 HAVANA gene 101578882 101588270 5420.0 - 0 ENSG00000166169.16 protein_coding POLL 2 OTTHUMG00000018933.3 +13161 chr10 ENSEMBL gene 101601417 101601497 81.0 + 0 ENSG00000263436.1 miRNA MIR3158-1 3 +13162 chr10 ENSEMBL gene 101601417 101601497 81.0 - 0 ENSG00000283558.1 miRNA MIR3158-2 3 +13163 chr10 HAVANA gene 101570560 101609668 1718.0 + 0 ENSG00000166171.12 protein_coding DPCD 2 OTTHUMG00000018934.2 ncRNA_host +13164 chr10 ENSEMBL gene 101622859 101622965 107.0 + 0 ENSG00000222051.1 snRNA RNU6-1165P 3 +13165 chr10 HAVANA gene 101610664 101695295 5038.0 - 0 ENSG00000107829.13 protein_coding FBXW4 2 OTTHUMG00000018938.4 +13166 chr10 HAVANA gene 101704652 101708401 291.0 - 0 ENSG00000224817.1 lincRNA AC010789.1 2 OTTHUMG00000018941.1 +13167 chr10 HAVANA gene 101770130 101780369 1403.0 - 0 ENSG00000107831.12 protein_coding FGF8 2 OTTHUMG00000018940.2 +13168 chr10 HAVANA gene 101781325 101783413 928.0 - 0 ENSG00000107833.10 protein_coding NPM3 2 OTTHUMG00000018942.2 +13169 chr10 HAVANA gene 101784443 101818465 7247.0 - 0 ENSG00000198408.13 protein_coding OGA 2 OTTHUMG00000018939.4 +13170 chr10 HAVANA gene 101819078 101828779 850.0 + 0 ENSG00000226009.1 antisense KCNIP2-AS1 2 OTTHUMG00000018936.1 +13171 chr10 HAVANA gene 101825974 101843920 3294.0 - 0 ENSG00000120049.19 protein_coding KCNIP2 1 OTTHUMG00000018937.4 +13172 chr10 ENSEMBL gene 101912998 101913279 282.0 - 0 ENSG00000274742.1 misc_RNA RF00017 3 +13173 chr10 ENSEMBL gene 101952605 101952704 100.0 - 0 ENSG00000222430.1 misc_RNA RF00019 3 +13174 chr10 HAVANA gene 101845599 102056193 4747.0 - 0 ENSG00000120029.12 protein_coding ARMH3 2 OTTHUMG00000018943.1 ncRNA_host +13175 chr10 HAVANA gene 102065390 102068038 2649.0 + 0 ENSG00000166189.7 protein_coding HPS6 2 OTTHUMG00000018945.2 +13176 chr10 HAVANA gene 102085476 102085730 255.0 - 0 ENSG00000224302.1 processed_pseudogene AL500527.1 1 OTTHUMG00000018946.1 pseudo_consens +13177 chr10 HAVANA gene 102089968 102090062 95.0 + 0 ENSG00000229629.1 processed_pseudogene AL500527.2 1 OTTHUMG00000018947.1 pseudo_consens +13178 chr10 HAVANA gene 102107560 102120453 2790.0 - 0 ENSG00000198728.10 protein_coding LDB1 2 OTTHUMG00000018950.1 +13179 chr10 HAVANA gene 102132994 102150331 6095.0 + 0 ENSG00000148840.10 protein_coding PPRC1 2 OTTHUMG00000018948.1 +13180 chr10 HAVANA gene 102152176 102163871 3970.0 + 0 ENSG00000166197.16 protein_coding NOLC1 1 OTTHUMG00000018944.5 +13181 chr10 HAVANA gene 102226328 102229589 1371.0 + 0 ENSG00000119915.4 protein_coding ELOVL3 2 OTTHUMG00000018951.1 +13182 chr10 HAVANA gene 102230186 102241474 1391.0 - 0 ENSG00000107859.9 protein_coding PITX3 2 OTTHUMG00000018952.1 +13183 chr10 HAVANA gene 102245532 102382899 6641.0 + 0 ENSG00000107862.4 protein_coding GBF1 2 OTTHUMG00000018955.1 +13184 chr10 HAVANA gene 102394110 102402529 4484.0 + 0 ENSG00000077150.18 protein_coding NFKB2 2 OTTHUMG00000018962.4 +13185 chr10 HAVANA gene 102402617 102421539 6338.0 - 0 ENSG00000059915.16 protein_coding PSD 2 OTTHUMG00000018954.4 +13186 chr10 HAVANA gene 102419189 102423136 2593.0 + 0 ENSG00000107872.12 protein_coding FBXL15 2 OTTHUMG00000018957.7 +13187 chr10 HAVANA gene 102423245 102432661 1412.0 - 0 ENSG00000107874.10 protein_coding CUEDC2 2 OTTHUMG00000018958.2 +13188 chr10 ENSEMBL gene 102436512 102436584 73.0 + 0 ENSG00000202569.4 miRNA MIR146B 3 +13189 chr10 HAVANA gene 102449837 102451543 1469.0 - 0 ENSG00000120055.7 protein_coding C10orf95 2 OTTHUMG00000018959.2 +13190 chr10 HAVANA gene 102449817 102461106 5660.0 + 0 ENSG00000269609.5 processed_transcript RPARP-AS1 2 OTTHUMG00000182529.1 +13191 chr10 HAVANA gene 102461395 102477045 3526.0 + 0 ENSG00000138111.14 protein_coding MFSD13A 2 OTTHUMG00000018961.3 +13192 chr10 HAVANA gene 102483039 102483559 521.0 + 0 ENSG00000273262.1 antisense AL121928.1 2 OTTHUMG00000186502.1 +13193 chr10 HAVANA gene 102461881 102502711 4654.0 - 0 ENSG00000138107.12 protein_coding ACTR1A 2 OTTHUMG00000018956.3 +13194 chr10 HAVANA gene 102572757 102573225 469.0 - 0 ENSG00000228657.1 processed_pseudogene RPL23AP58 1 OTTHUMG00000018963.1 pseudo_consens +13195 chr10 ENSEMBL gene 102591524 102591630 107.0 + 0 ENSG00000207029.1 snRNA RNU6-43P 3 +13196 chr10 HAVANA gene 102503987 102633535 6865.0 + 0 ENSG00000107882.11 protein_coding SUFU 2 OTTHUMG00000018966.4 ncRNA_host +13197 chr10 HAVANA gene 102642792 102644140 1349.0 - 0 ENSG00000272933.1 lincRNA AL391121.1 2 OTTHUMG00000186503.1 +13198 chr10 HAVANA gene 102642310 102660680 9542.0 + 0 ENSG00000171206.14 protein_coding TRIM8 1 OTTHUMG00000018964.8 +13199 chr10 HAVANA gene 102673731 102714407 3844.0 - 0 ENSG00000138175.8 protein_coding ARL3 2 OTTHUMG00000018965.2 +13200 chr10 HAVANA gene 102714538 102743492 8034.0 + 0 ENSG00000156398.12 protein_coding SFXN2 1 OTTHUMG00000018967.4 +13201 chr10 ENSEMBL gene 102803929 102804031 103.0 + 0 ENSG00000252994.1 snRNA RNU6-1231P 3 +13202 chr10 HAVANA gene 102743901 102834516 7880.0 + 0 ENSG00000166272.17 protein_coding WBP1L 2 OTTHUMG00000018968.4 ncRNA_host +13203 chr10 HAVANA gene 102830531 102837533 3445.0 - 0 ENSG00000148795.6 protein_coding CYP17A1 2 OTTHUMG00000018969.2 +13204 chr10 HAVANA gene 102838011 102845473 389.0 - 0 ENSG00000213061.2 processed_pseudogene PFN1P11 1 OTTHUMG00000018971.1 pseudo_consens +13205 chr10 HAVANA gene 102845595 102845950 356.0 + 0 ENSG00000236937.2 processed_pseudogene PTGES3P4 1 OTTHUMG00000018973.2 pseudo_consens +13206 chr10 HAVANA gene 102845761 102854513 924.0 - 0 ENSG00000282772.1 antisense AL358790.1 2 OTTHUMG00000191315.1 +13207 chr10 HAVANA gene 102854223 102864961 2708.0 + 0 ENSG00000166275.15 protein_coding BORCS7 2 OTTHUMG00000018975.2 overlapping_locus +13208 chr10 ENSEMBL gene 102868421 102868519 99.0 + 0 ENSG00000283337.1 snRNA RF00026 3 +13209 chr10 HAVANA gene 102887874 102888188 315.0 - 0 ENSG00000235266.1 processed_pseudogene RPL22P17 1 OTTHUMG00000018974.1 pseudo_consens +13210 chr10 HAVANA gene 102854272 102901899 2670.0 + 0 ENSG00000270316.1 protein_coding BORCS7-ASMT 2 OTTHUMG00000184175.2 ncRNA_host,overlapping_locus +13211 chr10 HAVANA gene 102869516 102901899 2404.0 + 0 ENSG00000214435.7 protein_coding AS3MT 2 OTTHUMG00000018972.1 overlapping_locus +13212 chr10 HAVANA gene 102914585 102915404 820.0 + 0 ENSG00000272912.1 lincRNA AL356608.1 2 OTTHUMG00000186504.1 +13213 chr10 ENSEMBL gene 103027336 103027498 163.0 + 0 ENSG00000278498.1 misc_RNA RF02271 3 +13214 chr10 HAVANA gene 102918293 103090221 16324.0 + 0 ENSG00000148842.17 protein_coding CNNM2 2 OTTHUMG00000018976.3 ncRNA_host +13215 chr10 HAVANA gene 103125017 103125416 400.0 - 0 ENSG00000237827.1 processed_pseudogene RPS15AP29 1 OTTHUMG00000018977.1 pseudo_consens,overlapping_locus +13216 chr10 HAVANA gene 103175554 103176094 541.0 + 0 ENSG00000213277.3 processed_pseudogene MARCKSL1P1 1 OTTHUMG00000018978.1 pseudo_consens +13217 chr10 HAVANA gene 103088017 103193306 5156.0 - 0 ENSG00000076685.18 protein_coding NT5C2 2 OTTHUMG00000018981.6 overlapping_locus +13218 chr10 HAVANA gene 103215709 103216800 1092.0 + 0 ENSG00000229256.1 processed_pseudogene ST13P13 1 OTTHUMG00000018979.1 pseudo_consens +13219 chr10 HAVANA gene 103245887 103248016 2130.0 + 0 ENSG00000235376.5 protein_coding RPEL1 2 OTTHUMG00000018980.2 retrogene +13220 chr10 HAVANA gene 103277163 103290351 3231.0 + 0 ENSG00000148798.10 protein_coding INA 2 OTTHUMG00000018986.1 +13221 chr10 ENSEMBL gene 103312436 103312568 133.0 - 0 ENSG00000212413.1 snRNA RNU11-3P 3 +13222 chr10 HAVANA gene 103302796 103351144 3008.0 - 0 ENSG00000156374.15 protein_coding PCGF6 2 OTTHUMG00000018982.3 ncRNA_host +13223 chr10 HAVANA gene 103367967 103389065 3268.0 + 0 ENSG00000148835.10 protein_coding TAF5 2 OTTHUMG00000018985.1 +13224 chr10 ENSEMBL gene 103394253 103394401 149.0 - 0 ENSG00000283867.1 miRNA MIR1307 3 +13225 chr10 HAVANA gene 103389041 103396492 924.0 - 0 ENSG00000173915.15 protein_coding ATP5MD 2 OTTHUMG00000018984.3 ncRNA_host +13226 chr10 HAVANA gene 103396626 103446292 7670.0 + 0 ENSG00000148843.14 protein_coding PDCD11 2 OTTHUMG00000018988.4 +13227 chr10 HAVANA gene 103450196 103450852 657.0 + 0 ENSG00000273485.1 antisense AL139339.2 2 OTTHUMG00000186511.1 +13228 chr10 HAVANA gene 103446786 103452402 3108.0 - 0 ENSG00000138172.10 protein_coding CALHM2 2 OTTHUMG00000018990.1 +13229 chr10 HAVANA gene 103453387 103458888 3053.0 - 0 ENSG00000185933.6 protein_coding CALHM1 2 OTTHUMG00000018991.1 +13230 chr10 HAVANA gene 103452846 103462695 657.0 + 0 ENSG00000234699.1 antisense AL139339.1 1 OTTHUMG00000018992.1 +13231 chr10 HAVANA gene 103472804 103479240 1652.0 - 0 ENSG00000183128.7 protein_coding CALHM3 2 OTTHUMG00000018989.1 +13232 chr10 HAVANA gene 103479603 103517393 1017.0 - 0 ENSG00000235470.5 antisense NEURL1-AS1 2 OTTHUMG00000018993.1 +13233 chr10 HAVANA gene 103549075 103550964 524.0 + 0 ENSG00000226431.1 sense_intronic AL121929.1 1 OTTHUMG00000018994.1 overlapping_locus +13234 chr10 HAVANA gene 103493979 103592552 4961.0 + 0 ENSG00000107954.10 protein_coding NEURL1 2 OTTHUMG00000018995.2 overlapping_locus +13235 chr10 HAVANA gene 103608619 103610050 1432.0 + 0 ENSG00000273108.1 antisense AL121929.2 2 OTTHUMG00000186512.1 +13236 chr10 ENSEMBL gene 103673158 103673265 108.0 + 0 ENSG00000222503.1 misc_RNA RF00019 3 +13237 chr10 HAVANA gene 103745966 103755423 2217.0 + 0 ENSG00000280693.2 antisense SH3PXD2A-AS1 2 OTTHUMG00000189516.1 +13238 chr10 HAVANA gene 103594027 103855543 11756.0 - 0 ENSG00000107957.16 protein_coding SH3PXD2A 2 OTTHUMG00000018997.2 +13239 chr10 HAVANA gene 103877374 103879761 2388.0 - 0 ENSG00000260461.1 sense_overlapping AL133355.1 2 OTTHUMG00000176198.1 +13240 chr10 HAVANA gene 103882542 103918205 1617.0 - 0 ENSG00000107960.10 protein_coding STN1 2 OTTHUMG00000018996.1 +13241 chr10 ENSEMBL gene 103974515 103974814 300.0 - 0 ENSG00000266754.2 misc_RNA RN7SL524P 3 +13242 chr10 HAVANA gene 103967201 104029233 7974.0 + 0 ENSG00000065613.13 protein_coding SLK 2 OTTHUMG00000018999.1 +13243 chr10 ENSEMBL gene 104048089 104048186 98.0 - 0 ENSG00000283788.1 miRNA MIR936 3 +13244 chr10 HAVANA gene 104031286 104085957 7066.0 - 0 ENSG00000065618.19 protein_coding COL17A1 2 OTTHUMG00000018998.8 ncRNA_host +13245 chr10 HAVANA gene 104122058 104126385 1812.0 + 0 ENSG00000156384.14 protein_coding SFR1 2 OTTHUMG00000019000.1 +13246 chr10 ENSEMBL gene 104218789 104218883 95.0 - 0 ENSG00000208033.1 miRNA MIR609 3 +13247 chr10 HAVANA gene 104129888 104232362 7184.0 - 0 ENSG00000197748.12 protein_coding CFAP43 2 OTTHUMG00000019002.2 ncRNA_host +13248 chr10 HAVANA gene 104235356 104267459 1691.0 + 0 ENSG00000148834.12 protein_coding GSTO1 2 OTTHUMG00000019001.2 +13249 chr10 ENSEMBL gene 104268336 104268405 70.0 - 0 ENSG00000266852.2 miRNA MIR4482 3 +13250 chr10 HAVANA gene 104268873 104304945 9921.0 + 0 ENSG00000065621.14 protein_coding GSTO2 2 OTTHUMG00000019006.4 +13251 chr10 HAVANA gene 104312141 104313881 244.0 + 0 ENSG00000270075.1 antisense AL162742.2 2 OTTHUMG00000019003.2 +13252 chr10 HAVANA gene 104323369 104327004 954.0 + 0 ENSG00000228261.1 lincRNA AL162742.1 2 OTTHUMG00000019004.1 +13253 chr10 HAVANA gene 104309698 104338448 7279.0 - 0 ENSG00000148841.16 protein_coding ITPRIP 2 OTTHUMG00000184003.5 +13254 chr10 HAVANA gene 104351591 104353575 795.0 - 0 ENSG00000231233.1 antisense CFAP58-DT 1 OTTHUMG00000019005.1 +13255 chr10 HAVANA gene 104353764 104455090 3548.0 + 0 ENSG00000120051.14 protein_coding CFAP58 2 OTTHUMG00000019007.1 +13256 chr10 HAVANA gene 104474939 104480274 1013.0 - 0 ENSG00000225768.1 lincRNA AL161646.1 2 OTTHUMG00000019008.1 +13257 chr10 HAVANA gene 104566972 104624795 1302.0 + 0 ENSG00000237761.2 lincRNA AL161646.2 2 OTTHUMG00000019009.2 +13258 chr10 HAVANA gene 104664608 104666200 1278.0 - 0 ENSG00000226387.2 antisense SORCS3-AS1 2 OTTHUMG00000019010.2 +13259 chr10 HAVANA gene 104641101 105265235 5764.0 + 0 ENSG00000156395.12 protein_coding SORCS3 2 OTTHUMG00000019011.1 +13260 chr10 ENSEMBL gene 105534659 105534765 107.0 + 0 ENSG00000207068.1 snRNA RNU6-463P 3 +13261 chr10 HAVANA gene 105685383 105685865 483.0 - 0 ENSG00000233477.1 processed_pseudogene PPIAP38 1 OTTHUMG00000019014.1 pseudo_consens +13262 chr10 HAVANA gene 105686322 105687051 730.0 + 0 ENSG00000213260.3 processed_pseudogene YWHAZP5 1 OTTHUMG00000019013.1 pseudo_consens +13263 chr10 HAVANA gene 105808775 105819197 456.0 - 0 ENSG00000229466.1 lincRNA AL731574.1 2 OTTHUMG00000019015.1 +13264 chr10 HAVANA gene 106140264 106188722 1890.0 + 0 ENSG00000229775.6 lincRNA AL353148.1 2 OTTHUMG00000019016.2 +13265 chr10 HAVANA gene 106550106 106551121 461.0 + 0 ENSG00000215002.2 processed_pseudogene RPL23AP59 1 OTTHUMG00000019017.1 pseudo_consens +13266 chr10 ENSEMBL gene 106970021 106970150 130.0 + 0 ENSG00000200626.1 rRNA_pseudogene RNA5SP325 3 +13267 chr10 HAVANA gene 106573663 107164534 9964.0 - 0 ENSG00000108018.15 protein_coding SORCS1 2 OTTHUMG00000019018.5 +13268 chr10 ENSEMBL gene 107461560 107461669 110.0 + 0 ENSG00000200079.1 rRNA_pseudogene RNA5SP326 3 +13269 chr10 HAVANA gene 107694973 108197849 6148.0 - 0 ENSG00000229981.7 lincRNA LINC01435 2 OTTHUMG00000019020.7 +13270 chr10 HAVANA gene 108296099 108296532 434.0 + 0 ENSG00000234544.2 processed_pseudogene PTGES3P5 1 OTTHUMG00000019021.2 pseudo_consens +13271 chr10 HAVANA gene 108547975 108561815 575.0 - 0 ENSG00000203434.2 lincRNA AL353740.1 2 OTTHUMG00000019022.1 +13272 chr10 HAVANA gene 108710518 108839363 480.0 + 0 ENSG00000223381.1 lincRNA AL356476.1 2 OTTHUMG00000019024.1 +13273 chr10 HAVANA gene 108848186 108849561 1376.0 + 0 ENSG00000224498.1 processed_pseudogene MAPKAPK5P1 1 OTTHUMG00000019023.1 pseudo_consens +13274 chr10 ENSEMBL gene 108940969 108941310 342.0 - 0 ENSG00000222436.1 misc_RNA RN7SKP278 3 +13275 chr10 ENSEMBL gene 109184934 109185001 68.0 - 0 ENSG00000252574.2 snRNA RNU5B-6P 3 +13276 chr10 ENSEMBL gene 109239639 109239746 108.0 + 0 ENSG00000200217.1 snRNA RNU6-839P 3 +13277 chr10 HAVANA gene 109528119 109529008 890.0 + 0 ENSG00000232728.1 processed_pseudogene PHB2P1 1 OTTHUMG00000019025.1 pseudo_consens +13278 chr10 HAVANA gene 109534655 109534990 336.0 + 0 ENSG00000237242.1 processed_pseudogene BTF3P15 1 OTTHUMG00000019026.1 pseudo_consens +13279 chr10 HAVANA gene 109661814 109662050 237.0 + 0 ENSG00000270333.1 processed_pseudogene AL390123.1 1 OTTHUMG00000184642.1 pseudo_consens +13280 chr10 HAVANA gene 109680442 109681041 600.0 + 0 ENSG00000270294.1 processed_pseudogene XIAPP1 1 OTTHUMG00000184641.1 pseudo_consens +13281 chr10 HAVANA gene 109807651 109808129 479.0 + 0 ENSG00000224907.1 processed_pseudogene RPL21P91 1 OTTHUMG00000019027.1 pseudo_consens +13282 chr10 ENSEMBL gene 109869858 109869992 135.0 + 0 ENSG00000272160.1 snRNA RNU4-5P 3 +13283 chr10 HAVANA gene 109864766 109923553 6691.0 - 0 ENSG00000108039.17 protein_coding XPNPEP1 1 OTTHUMG00000019029.4 +13284 chr10 HAVANA gene 109940104 110008381 9007.0 - 0 ENSG00000203876.9 processed_transcript ADD3-AS1 1 OTTHUMG00000019028.3 +13285 chr10 HAVANA gene 109996368 110135565 6541.0 + 0 ENSG00000148700.14 protein_coding ADD3 2 OTTHUMG00000019032.1 +13286 chr10 HAVANA gene 110139214 110139426 213.0 - 0 ENSG00000226734.1 processed_pseudogene SNRPGP12 1 OTTHUMG00000019031.1 pseudo_consens +13287 chr10 HAVANA gene 110207850 110208591 470.0 - 0 ENSG00000228417.1 antisense AL360182.2 2 OTTHUMG00000019035.1 +13288 chr10 HAVANA gene 110257064 110257843 468.0 + 0 ENSG00000214067.2 processed_pseudogene AL360182.1 1 OTTHUMG00000019034.1 pseudo_consens,overlapping_locus +13289 chr10 HAVANA gene 110207605 110287365 4607.0 + 0 ENSG00000119950.20 protein_coding MXI1 2 OTTHUMG00000019033.2 overlapping_locus +13290 chr10 HAVANA gene 110290730 110304951 5417.0 - 0 ENSG00000119953.12 protein_coding SMNDC1 2 OTTHUMG00000019036.2 +13291 chr10 HAVANA gene 110450629 110451240 612.0 + 0 ENSG00000237642.1 processed_pseudogene HMGB3P5 1 OTTHUMG00000019038.1 pseudo_consens +13292 chr10 HAVANA gene 110428840 110496204 628.0 - 0 ENSG00000273143.1 lincRNA AL355512.1 2 OTTHUMG00000186513.2 +13293 chr10 HAVANA gene 110497838 110511544 2615.0 + 0 ENSG00000138166.5 protein_coding DUSP5 2 OTTHUMG00000019040.1 +13294 chr10 HAVANA gene 110550115 110550854 740.0 - 0 ENSG00000233518.1 processed_pseudogene RPL7P35 1 OTTHUMG00000019041.1 pseudo_consens +13295 chr10 HAVANA gene 110567691 110604636 4275.0 + 0 ENSG00000108055.9 protein_coding SMC3 2 OTTHUMG00000019042.1 +13296 chr10 ENSEMBL gene 110642678 110642785 108.0 - 0 ENSG00000223302.1 misc_RNA RF00019 3 +13297 chr10 ENSEMBL gene 110756456 110756723 268.0 + 0 ENSG00000252036.1 misc_RNA RN7SKP288 3 +13298 chr10 ENSEMBL gene 110761142 110761242 101.0 + 0 ENSG00000199364.1 rRNA_pseudogene RNA5SP327 3 +13299 chr10 HAVANA gene 110644397 110839469 8162.0 + 0 ENSG00000203867.7 protein_coding RBM20 2 OTTHUMG00000019043.5 ncRNA_host +13300 chr10 HAVANA gene 110869743 110871594 401.0 + 0 ENSG00000232470.1 lincRNA AL136368.1 2 OTTHUMG00000019044.1 +13301 chr10 HAVANA gene 110869868 110872233 778.0 - 0 ENSG00000203497.2 antisense PDCD4-AS1 1 OTTHUMG00000019045.1 +13302 chr10 ENSEMBL gene 110898090 110898155 66.0 + 0 ENSG00000284482.1 miRNA MIR4680 3 +13303 chr10 HAVANA gene 110871795 110900006 4547.0 + 0 ENSG00000150593.17 protein_coding PDCD4 2 OTTHUMG00000019048.2 ncRNA_host +13304 chr10 HAVANA gene 110907483 110908182 700.0 + 0 ENSG00000278601.1 antisense AL158163.2 2 OTTHUMG00000186514.1 +13305 chr10 HAVANA gene 110910596 110912244 1649.0 + 0 ENSG00000270589.1 antisense AL158163.1 2 OTTHUMG00000184233.1 +13306 chr10 HAVANA gene 110898730 110919274 8075.0 - 0 ENSG00000214413.7 protein_coding BBIP1 2 OTTHUMG00000019046.3 +13307 chr10 HAVANA gene 110936622 110937233 612.0 - 0 ENSG00000234118.1 processed_pseudogene RPL13AP6 1 OTTHUMG00000019049.1 pseudo_consens +13308 chr10 ENSEMBL gene 110988926 110989013 88.0 + 0 ENSG00000221214.1 miRNA MIR548E 3 +13309 chr10 HAVANA gene 110919547 111013667 4429.0 + 0 ENSG00000108061.11 protein_coding SHOC2 2 OTTHUMG00000019047.1 ncRNA_host +13310 chr10 HAVANA gene 111077163 111080907 3745.0 + 0 ENSG00000150594.6 protein_coding ADRA2A 2 OTTHUMG00000019050.2 retrogene +13311 chr10 HAVANA gene 111104956 111105248 293.0 + 0 ENSG00000213247.3 processed_pseudogene AL355863.1 1 OTTHUMG00000019051.1 pseudo_consens +13312 chr10 HAVANA gene 111322778 111323397 620.0 + 0 ENSG00000237618.1 processed_pseudogene BTBD7P2 1 OTTHUMG00000019053.1 pseudo_consens +13313 chr10 HAVANA gene 111349939 111352103 427.0 - 0 ENSG00000227851.1 lincRNA AC021035.1 2 OTTHUMG00000019052.1 +13314 chr10 HAVANA gene 111498191 111498941 751.0 - 0 ENSG00000230809.1 processed_pseudogene RPS6P15 1 OTTHUMG00000019054.1 pseudo_consens +13315 chr10 HAVANA gene 112149864 112215377 9808.0 - 0 ENSG00000119927.13 protein_coding GPAM 2 OTTHUMG00000019055.2 +13316 chr10 ENSEMBL gene 112299612 112299688 77.0 - 0 ENSG00000283688.1 miRNA MIR6715B 3 +13317 chr10 ENSEMBL gene 112299612 112299690 79.0 + 0 ENSG00000276857.1 miRNA MIR6715A 3 +13318 chr10 HAVANA gene 112283400 112305035 3932.0 + 0 ENSG00000119913.5 protein_coding TECTB 2 OTTHUMG00000019056.3 ncRNA_host +13319 chr10 HAVANA gene 112308181 112356574 3268.0 - 0 ENSG00000243316.7 transcribed_unitary_pseudogene GUCY2GP 2 OTTHUMG00000019058.5 +13320 chr10 HAVANA gene 112395813 112425589 3099.0 - 0 ENSG00000232934.7 antisense AL157786.1 2 OTTHUMG00000019057.7 overlapping_locus +13321 chr10 HAVANA gene 112374018 112428380 4236.0 + 0 ENSG00000197142.10 protein_coding ACSL5 2 OTTHUMG00000019060.1 +13322 chr10 HAVANA gene 112424428 112446917 3748.0 - 0 ENSG00000023041.11 protein_coding ZDHHC6 2 OTTHUMG00000019062.2 overlapping_locus +13323 chr10 HAVANA gene 112548632 112548872 241.0 - 0 ENSG00000234017.1 processed_pseudogene AC022018.1 1 OTTHUMG00000019061.1 pseudo_consens +13324 chr10 ENSEMBL gene 112634170 112634254 85.0 + 0 ENSG00000264763.1 miRNA MIR4295 3 +13325 chr10 HAVANA gene 112671812 112677819 358.0 - 0 ENSG00000233340.1 antisense AL139120.1 2 OTTHUMG00000019064.1 +13326 chr10 HAVANA gene 112446998 112818744 8408.0 + 0 ENSG00000151532.13 protein_coding VTI1A 2 OTTHUMG00000019063.2 ncRNA_host +13327 chr10 HAVANA gene 112810031 112821838 1239.0 - 0 ENSG00000285676.1 antisense AL158212.5 2 OTTHUMG00000193067.1 +13328 chr10 HAVANA gene 112823490 112827726 4237.0 + 0 ENSG00000260917.1 sense_overlapping AL158212.3 2 OTTHUMG00000176201.1 +13329 chr10 HAVANA gene 112831169 112832454 1286.0 + 0 ENSG00000279315.1 TEC AL158212.4 2 OTTHUMG00000176202.1 +13330 chr10 HAVANA gene 112888735 112906111 315.0 + 0 ENSG00000225292.2 sense_intronic AL158212.1 2 OTTHUMG00000019067.2 +13331 chr10 HAVANA gene 112950646 112951875 460.0 - 0 ENSG00000233547.1 antisense AL158212.2 1 OTTHUMG00000019066.1 +13332 chr10 HAVANA gene 112987476 112987865 390.0 + 0 ENSG00000227560.1 processed_pseudogene RPS15AP30 1 OTTHUMG00000019068.1 pseudo_consens,overlapping_locus +13333 chr10 HAVANA gene 112950250 113167678 6736.0 + 0 ENSG00000148737.16 protein_coding TCF7L2 2 OTTHUMG00000019070.10 overlapping_locus +13334 chr10 ENSEMBL gene 113353425 113353484 60.0 + 0 ENSG00000238380.1 snRNA RNU7-165P 3 +13335 chr10 HAVANA gene 113482616 113483113 498.0 + 0 ENSG00000230018.1 processed_pseudogene PPIAP39 1 OTTHUMG00000019071.1 pseudo_consens +13336 chr10 HAVANA gene 113550837 113589602 3657.0 + 0 ENSG00000148702.14 protein_coding HABP2 2 OTTHUMG00000019073.1 +13337 chr10 HAVANA gene 113588716 113664127 5724.0 - 0 ENSG00000197893.13 protein_coding NRAP 2 OTTHUMG00000019072.2 +13338 chr10 HAVANA gene 113710681 113719332 692.0 - 0 ENSG00000234393.1 antisense AL592546.1 2 OTTHUMG00000019075.1 +13339 chr10 HAVANA gene 113679162 113730907 3528.0 + 0 ENSG00000165806.19 protein_coding CASP7 2 OTTHUMG00000019076.4 +13340 chr10 ENSEMBL gene 113777993 113778054 62.0 - 0 ENSG00000283656.1 miRNA MIR4483 3 +13341 chr10 HAVANA gene 113751454 113783429 5402.0 + 0 ENSG00000148735.14 protein_coding PLEKHS1 2 OTTHUMG00000019074.2 +13342 chr10 ENSEMBL gene 113820459 113820590 132.0 + 0 ENSG00000212589.1 snoRNA RF00560 3 +13343 chr10 HAVANA gene 113834725 113854383 4600.0 - 0 ENSG00000198924.7 protein_coding DCLRE1A 2 OTTHUMG00000019077.2 +13344 chr10 HAVANA gene 113854661 113917194 11223.0 + 0 ENSG00000196865.4 protein_coding NHLRC2 2 OTTHUMG00000019078.1 +13345 chr10 HAVANA gene 114044056 114046908 2853.0 + 0 ENSG00000043591.5 protein_coding ADRB1 2 OTTHUMG00000019079.1 retrogene +13346 chr10 ENSEMBL gene 114111414 114111517 104.0 + 0 ENSG00000253066.1 snRNA RNU6-709P 3 +13347 chr10 HAVANA gene 114117147 114117551 405.0 + 0 ENSG00000226582.1 processed_pseudogene UBE2V1P5 1 OTTHUMG00000019080.1 pseudo_consens +13348 chr10 HAVANA gene 114109856 114118700 1936.0 - 0 ENSG00000285540.1 lincRNA AC022023.1 2 OTTHUMG00000193234.2 +13349 chr10 ENSEMBL gene 114168156 114168280 125.0 - 0 ENSG00000273904.1 ribozyme RF02277 3 +13350 chr10 ENSEMBL gene 114174105 114174179 75.0 - 0 ENSG00000284442.1 miRNA MIR2110 3 +13351 chr10 HAVANA gene 114120862 114174232 9003.0 - 0 ENSG00000165813.19 protein_coding CCDC186 1 OTTHUMG00000019081.3 ncRNA_host +13352 chr10 HAVANA gene 114179270 114232304 5256.0 + 0 ENSG00000095627.9 protein_coding TDRD1 2 OTTHUMG00000019083.2 +13353 chr10 HAVANA gene 114246074 114246714 333.0 + 0 ENSG00000230165.1 processed_pseudogene AURKAP2 1 OTTHUMG00000019084.1 pseudo_consens,overlapping_locus +13354 chr10 HAVANA gene 114280725 114281258 534.0 - 0 ENSG00000275024.1 antisense AC005383.1 2 OTTHUMG00000186515.1 +13355 chr10 HAVANA gene 114239330 114291513 3301.0 + 0 ENSG00000165816.12 protein_coding VWA2 2 OTTHUMG00000019082.3 overlapping_locus +13356 chr10 HAVANA gene 114294824 114404756 5789.0 - 0 ENSG00000169129.14 protein_coding AFAP1L2 2 OTTHUMG00000019086.3 +13357 chr10 ENSEMBL gene 114423770 114424067 298.0 - 0 ENSG00000242912.3 misc_RNA RN7SL384P 3 +13358 chr10 HAVANA gene 114424445 114427398 2954.0 - 0 ENSG00000279796.1 TEC AL133384.2 2 OTTHUMG00000176203.1 +13359 chr10 HAVANA gene 114501997 114502347 351.0 - 0 ENSG00000229668.1 processed_pseudogene AL133384.1 1 OTTHUMG00000019085.1 pseudo_consens,overlapping_locus +13360 chr10 HAVANA gene 114431113 114685003 9871.0 - 0 ENSG00000099204.19 protein_coding ABLIM1 2 OTTHUMG00000019088.8 overlapping_locus +13361 chr10 HAVANA gene 114690143 114690634 492.0 - 0 ENSG00000228169.3 processed_pseudogene PPIAP19 1 OTTHUMG00000019087.1 pseudo_consens +13362 chr10 HAVANA gene 114764788 114794344 2773.0 + 0 ENSG00000228484.2 lincRNA AL137025.1 2 OTTHUMG00000019090.3 +13363 chr10 HAVANA gene 114809375 114811170 499.0 + 0 ENSG00000215760.2 processed_pseudogene TAF9BP2 1 OTTHUMG00000019091.1 pseudo_consens +13364 chr10 HAVANA gene 114821744 114899832 6216.0 + 0 ENSG00000151553.14 protein_coding FAM160B1 2 OTTHUMG00000019092.2 +13365 chr10 HAVANA gene 114900722 114901366 645.0 + 0 ENSG00000226428.1 processed_pseudogene RPL15P13 1 OTTHUMG00000019093.1 pseudo_consens +13366 chr10 ENSEMBL gene 114969460 114969568 109.0 - 0 ENSG00000252611.1 snRNA RNU6-1121P 3 +13367 chr10 HAVANA gene 114938193 114977676 3601.0 + 0 ENSG00000165832.5 protein_coding TRUB1 2 OTTHUMG00000019094.2 +13368 chr10 HAVANA gene 114994657 114996593 344.0 + 0 ENSG00000236799.1 lincRNA AL355340.1 1 OTTHUMG00000019095.1 +13369 chr10 HAVANA gene 115123482 115218819 6449.0 - 0 ENSG00000285582.1 antisense AC016042.1 2 OTTHUMG00000192936.1 +13370 chr10 HAVANA gene 115819842 115820487 646.0 - 0 ENSG00000270965.1 processed_pseudogene NTAN1P1 1 OTTHUMG00000184683.1 pseudo_consens +13371 chr10 HAVANA gene 115093365 115948992 9824.0 + 0 ENSG00000107518.17 protein_coding ATRNL1 1 OTTHUMG00000019096.12 +13372 chr10 HAVANA gene 116056925 116273467 9678.0 - 0 ENSG00000151892.14 protein_coding GFRA1 2 OTTHUMG00000019097.4 +13373 chr10 HAVANA gene 116274270 116281071 2848.0 + 0 ENSG00000285587.1 bidirectional_promoter_lncRNA AC012470.1 2 OTTHUMG00000192868.2 +13374 chr10 HAVANA gene 116324428 116380029 1777.0 + 0 ENSG00000182645.5 protein_coding CCDC172 2 OTTHUMG00000019098.2 +13375 chr10 HAVANA gene 116409256 116409475 220.0 + 0 ENSG00000205433.4 processed_pseudogene SNRPGP6 1 OTTHUMG00000019099.1 pseudo_consens +13376 chr10 HAVANA gene 116439468 116440044 577.0 - 0 ENSG00000227096.1 processed_pseudogene HMGB3P8 1 OTTHUMG00000019101.2 pseudo_consens +13377 chr10 HAVANA gene 116427867 116477957 2354.0 + 0 ENSG00000203837.4 protein_coding PNLIPRP3 2 OTTHUMG00000019100.1 +13378 chr10 ENSEMBL gene 116538183 116538276 94.0 + 0 ENSG00000200935.1 snRNA RNU6-1090P 3 +13379 chr10 HAVANA gene 116545931 116567855 1539.0 + 0 ENSG00000175535.6 protein_coding PNLIP 2 OTTHUMG00000019103.1 +13380 chr10 HAVANA gene 116577308 116583317 675.0 + 0 ENSG00000232091.1 unprocessed_pseudogene PNLIPP1 2 OTTHUMG00000019102.1 +13381 chr10 HAVANA gene 116590385 116609175 4986.0 + 0 ENSG00000187021.14 protein_coding PNLIPRP1 2 OTTHUMG00000019109.4 +13382 chr10 HAVANA gene 116620953 116645143 1574.0 + 0 ENSG00000266200.6 polymorphic_pseudogene PNLIPRP2 2 OTTHUMG00000181599.4 +13383 chr10 HAVANA gene 116663696 116670264 2411.0 - 0 ENSG00000165863.16 protein_coding C10orf82 1 OTTHUMG00000019105.2 +13384 chr10 HAVANA gene 116670103 116672739 778.0 + 0 ENSG00000232767.1 antisense AC016825.1 2 OTTHUMG00000019106.1 +13385 chr10 HAVANA gene 116749905 116751261 881.0 + 0 ENSG00000228195.2 processed_pseudogene RPL5P27 1 OTTHUMG00000019108.1 pseudo_consens +13386 chr10 HAVANA gene 116671192 116850236 11834.0 - 0 ENSG00000165868.14 protein_coding HSPA12A 2 OTTHUMG00000019107.5 +13387 chr10 HAVANA gene 116849512 116911788 3164.0 + 0 ENSG00000188316.13 protein_coding ENO4 1 OTTHUMG00000019113.6 +13388 chr10 HAVANA gene 117023674 117023851 178.0 - 0 ENSG00000235742.1 processed_pseudogene AC012308.1 2 OTTHUMG00000019115.1 +13389 chr10 HAVANA gene 116881482 117126586 8247.0 - 0 ENSG00000187164.19 protein_coding SHTN1 2 OTTHUMG00000019114.3 +13390 chr10 HAVANA gene 117128521 117138301 5788.0 - 0 ENSG00000148704.12 protein_coding VAX1 2 OTTHUMG00000019117.4 +13391 chr10 ENSEMBL gene 117167678 117167774 97.0 - 0 ENSG00000266782.1 miRNA MIR3663 3 +13392 chr10 HAVANA gene 117158656 117169059 2385.0 - 0 ENSG00000234474.2 lincRNA MIR3663HG 1 OTTHUMG00000019116.2 ncRNA_host +13393 chr10 HAVANA gene 117196168 117196654 487.0 - 0 ENSG00000236171.1 processed_pseudogene RPL12P26 1 OTTHUMG00000019118.1 pseudo_consens +13394 chr10 HAVANA gene 117197489 117210299 1155.0 + 0 ENSG00000186795.1 protein_coding KCNK18 2 OTTHUMG00000019120.3 +13395 chr10 HAVANA gene 117239600 117241923 744.0 - 0 ENSG00000225936.1 antisense AL731557.1 2 OTTHUMG00000019119.1 +13396 chr10 HAVANA gene 117267116 117268668 1553.0 - 0 ENSG00000277879.1 antisense AL391988.1 2 OTTHUMG00000186530.1 +13397 chr10 HAVANA gene 117241073 117279430 4145.0 + 0 ENSG00000165646.13 protein_coding SLC18A2 2 OTTHUMG00000019121.3 +13398 chr10 HAVANA gene 117277274 117375467 9881.0 - 0 ENSG00000165650.11 protein_coding PDZD8 2 OTTHUMG00000019122.2 +13399 chr10 HAVANA gene 117425194 117490419 526.0 + 0 ENSG00000258114.1 lincRNA AC005871.2 2 OTTHUMG00000169985.1 +13400 chr10 HAVANA gene 117473215 117545068 8824.0 - 0 ENSG00000229847.8 antisense EMX2OS 1 OTTHUMG00000019125.6 +13401 chr10 HAVANA gene 117542444 117549546 3262.0 + 0 ENSG00000170370.11 protein_coding EMX2 2 OTTHUMG00000019123.5 +13402 chr10 HAVANA gene 117562084 117572457 475.0 - 0 ENSG00000235198.1 lincRNA AC005871.1 2 OTTHUMG00000019124.1 +13403 chr10 HAVANA gene 117735313 117736407 244.0 + 0 ENSG00000234952.1 lincRNA AL139121.1 2 OTTHUMG00000019126.1 +13404 chr10 HAVANA gene 117825903 117830518 632.0 - 0 ENSG00000263041.1 lincRNA AL513324.1 2 OTTHUMG00000177332.1 +13405 chr10 HAVANA gene 118017487 118045810 2085.0 + 0 ENSG00000231104.8 antisense AC022395.1 2 OTTHUMG00000019129.6 +13406 chr10 HAVANA gene 118004916 118046603 6169.0 - 0 ENSG00000107560.11 protein_coding RAB11FIP2 2 OTTHUMG00000019128.3 +13407 chr10 HAVANA gene 118046279 118210153 10032.0 + 0 ENSG00000177640.15 antisense CASC2 2 OTTHUMG00000019127.8 +13408 chr10 HAVANA gene 118241564 118267710 1054.0 + 0 ENSG00000238276.5 processed_transcript AL354863.1 2 OTTHUMG00000019130.1 +13409 chr10 HAVANA gene 118297930 118342328 15018.0 - 0 ENSG00000165669.13 protein_coding FAM204A 2 OTTHUMG00000019131.5 +13410 chr10 HAVANA gene 118357108 118365103 971.0 + 0 ENSG00000232139.5 lincRNA LINC00867 2 OTTHUMG00000019132.1 +13411 chr10 HAVANA gene 118572871 118573620 454.0 + 0 ENSG00000234309.1 processed_pseudogene SLC25A18P1 1 OTTHUMG00000019134.1 pseudo_consens +13412 chr10 HAVANA gene 118589989 118595699 5565.0 - 0 ENSG00000119973.5 protein_coding PRLHR 2 OTTHUMG00000019136.3 +13413 chr10 HAVANA gene 118643760 118644198 439.0 + 0 ENSG00000225155.4 processed_pseudogene TOMM22P5 1 OTTHUMG00000019135.2 pseudo_consens +13414 chr10 HAVANA gene 118692361 118693535 1175.0 - 0 ENSG00000277687.1 sense_intronic AL139407.1 2 OTTHUMG00000186562.1 overlapping_locus +13415 chr10 HAVANA gene 118674167 118755249 12406.0 - 0 ENSG00000151893.14 protein_coding CACUL1 2 OTTHUMG00000019138.7 overlapping_locus +13416 chr10 HAVANA gene 118872054 118872602 549.0 - 0 ENSG00000236058.3 processed_pseudogene RPL17P36 1 OTTHUMG00000019137.1 pseudo_consens +13417 chr10 HAVANA gene 118932674 118933295 622.0 - 0 ENSG00000213574.2 processed_pseudogene LDHAP5 1 OTTHUMG00000019139.1 pseudo_consens +13418 chr10 HAVANA gene 119003536 119003884 229.0 - 0 ENSG00000229272.1 antisense AL157788.1 2 OTTHUMG00000019140.1 +13419 chr10 HAVANA gene 119029716 119033732 4017.0 + 0 ENSG00000188613.6 protein_coding NANOS1 2 OTTHUMG00000019141.2 +13420 chr10 ENSEMBL gene 119060011 119060138 128.0 - 0 ENSG00000207468.1 snoRNA SNORA19 3 +13421 chr10 ENSEMBL gene 119060983 119061111 129.0 - 0 ENSG00000222588.1 snoRNA RF00413 3 +13422 chr10 HAVANA gene 119033670 119080823 7101.0 - 0 ENSG00000107581.12 protein_coding EIF3A 2 OTTHUMG00000019144.3 ncRNA_host +13423 chr10 HAVANA gene 119093140 119093341 202.0 + 0 ENSG00000271343.1 processed_pseudogene AL355598.1 1 OTTHUMG00000184639.1 pseudo_consens +13424 chr10 HAVANA gene 119104086 119137984 6161.0 + 0 ENSG00000119979.17 protein_coding FAM45A 2 OTTHUMG00000019143.3 +13425 chr10 HAVANA gene 119140767 119165667 1868.0 - 0 ENSG00000183605.16 protein_coding SFXN4 2 OTTHUMG00000019147.6 +13426 chr10 HAVANA gene 119167703 119178833 3417.0 - 0 ENSG00000165672.6 protein_coding PRDX3 2 OTTHUMG00000019146.2 +13427 chr10 HAVANA gene 119208531 119211760 400.0 + 0 ENSG00000228485.1 sense_intronic GRK5-IT1 1 OTTHUMG00000019145.1 overlapping_locus +13428 chr10 ENSEMBL gene 119212857 119213146 290.0 + 0 ENSG00000242853.3 misc_RNA RN7SL749P 3 +13429 chr10 HAVANA gene 119330233 119336182 1524.0 - 0 ENSG00000236426.5 antisense AL583824.1 1 OTTHUMG00000019148.4 +13430 chr10 ENSEMBL gene 119377972 119378043 72.0 + 0 ENSG00000265719.1 miRNA MIR4681 3 +13431 chr10 HAVANA gene 119207589 119459742 7000.0 + 0 ENSG00000198873.11 protein_coding GRK5 2 OTTHUMG00000019149.3 ncRNA_host,overlapping_locus +13432 chr10 HAVANA gene 119499828 119542708 1252.0 - 0 ENSG00000148908.14 protein_coding RGS10 2 OTTHUMG00000019150.1 +13433 chr10 HAVANA gene 119562101 119562530 430.0 - 0 ENSG00000271353.1 processed_pseudogene AC012468.1 1 OTTHUMG00000184680.1 pseudo_consens +13434 chr10 HAVANA gene 119571802 119597029 7355.0 - 0 ENSG00000151923.17 protein_coding TIAL1 2 OTTHUMG00000019156.8 +13435 chr10 HAVANA gene 119621068 119621880 813.0 + 0 ENSG00000234569.1 processed_pseudogene RAD1P1 1 OTTHUMG00000019152.1 pseudo_consens +13436 chr10 HAVANA gene 119638456 119639082 627.0 + 0 ENSG00000227437.1 processed_pseudogene RPS8P4 1 OTTHUMG00000019153.1 pseudo_consens +13437 chr10 HAVANA gene 119651370 119677819 2747.0 + 0 ENSG00000151929.9 protein_coding BAG3 2 OTTHUMG00000019155.2 +13438 chr10 HAVANA gene 119683127 119683823 371.0 - 0 ENSG00000232823.2 processed_pseudogene TXNP1 1 OTTHUMG00000019154.2 pseudo_consens +13439 chr10 ENSEMBL gene 119768247 119768538 292.0 + 0 ENSG00000242818.3 misc_RNA RN7SL846P 3 +13440 chr10 HAVANA gene 119793589 119816642 1573.0 - 0 ENSG00000270300.2 transcribed_processed_pseudogene PHACTR2P1 1 OTTHUMG00000184679.2 pseudo_consens +13441 chr10 HAVANA gene 119818866 119819133 268.0 + 0 ENSG00000282413.1 processed_pseudogene AL133461.1 2 OTTHUMG00000191457.1 +13442 chr10 HAVANA gene 119726042 119829278 7610.0 + 0 ENSG00000198825.13 protein_coding INPP5F 2 OTTHUMG00000019158.7 ncRNA_host +13443 chr10 HAVANA gene 119829404 119892556 6000.0 - 0 ENSG00000197771.12 protein_coding MCMBP 2 OTTHUMG00000019159.4 +13444 chr10 HAVANA gene 119892711 119944658 7867.0 + 0 ENSG00000107651.12 protein_coding SEC23IP 2 OTTHUMG00000019161.3 +13445 chr10 ENSEMBL gene 119958513 119958592 80.0 + 0 ENSG00000265370.1 miRNA MIR4682 3 +13446 chr10 HAVANA gene 119997086 119997709 624.0 - 0 ENSG00000180230.6 processed_pseudogene NACAP2 1 OTTHUMG00000019162.1 pseudo_consens +13447 chr10 HAVANA gene 120069980 120070159 180.0 - 0 ENSG00000223455.1 processed_pseudogene AL355298.1 1 OTTHUMG00000019163.1 pseudo_consens +13448 chr10 HAVANA gene 120354701 120355183 483.0 - 0 ENSG00000220842.6 processed_pseudogene RPL21P16 2 OTTHUMG00000019165.2 +13449 chr10 HAVANA gene 120434983 120440376 876.0 + 0 ENSG00000234522.1 unprocessed_pseudogene AC073587.1 2 OTTHUMG00000019166.1 +13450 chr10 HAVANA gene 120456954 120589855 1785.0 + 0 ENSG00000203805.10 protein_coding PLPP4 2 OTTHUMG00000019168.2 +13451 chr10 HAVANA gene 120597949 120600124 2176.0 + 0 ENSG00000177234.7 lincRNA LINC01561 2 OTTHUMG00000019167.4 +13452 chr10 HAVANA gene 120819307 120825311 2101.0 + 0 ENSG00000274461.1 processed_transcript AL391425.1 2 OTTHUMG00000188117.1 +13453 chr10 HAVANA gene 120761812 120851345 4112.0 - 0 ENSG00000227165.8 antisense WDR11-AS1 2 OTTHUMG00000019169.6 +13454 chr10 HAVANA gene 120879256 120880667 625.0 - 0 ENSG00000271670.1 antisense AC010998.2 2 OTTHUMG00000184250.1 +13455 chr10 HAVANA gene 120851175 120909524 10837.0 + 0 ENSG00000120008.15 protein_coding WDR11 2 OTTHUMG00000019171.5 +13456 chr10 HAVANA gene 120925547 120980700 943.0 - 0 ENSG00000227307.1 lincRNA AC010998.1 2 OTTHUMG00000019170.1 +13457 chr10 HAVANA gene 120984966 120985596 631.0 - 0 ENSG00000278484.1 lincRNA AC010998.3 2 OTTHUMG00000186563.1 +13458 chr10 HAVANA gene 121133090 121133723 588.0 - 0 ENSG00000236762.1 processed_pseudogene RPL19P16 1 OTTHUMG00000019172.2 pseudo_consens +13459 chr10 HAVANA gene 121178700 121185966 2864.0 + 0 ENSG00000227143.1 lincRNA LINC01153 2 OTTHUMG00000019173.1 +13460 chr10 ENSEMBL gene 121410916 121411200 285.0 + 0 ENSG00000222979.1 misc_RNA RN7SKP167 3 +13461 chr10 HAVANA gene 121478334 121598458 7578.0 - 0 ENSG00000066468.22 protein_coding FGFR2 1 OTTHUMG00000019175.12 +13462 chr10 HAVANA gene 121615425 121615839 310.0 - 0 ENSG00000223432.1 lincRNA AC009988.1 2 OTTHUMG00000019174.1 +13463 chr10 HAVANA gene 121713607 121713994 388.0 + 0 ENSG00000223540.1 processed_pseudogene RPS15AP5 1 OTTHUMG00000019176.1 pseudo_consens +13464 chr10 HAVANA gene 121736303 121739730 299.0 + 0 ENSG00000224250.1 antisense AC025947.1 2 OTTHUMG00000019177.1 +13465 chr10 ENSEMBL gene 121846600 121846700 101.0 + 0 ENSG00000201884.1 misc_RNA RF00019 3 +13466 chr10 HAVANA gene 121740421 121928801 5720.0 - 0 ENSG00000107669.17 protein_coding ATE1 2 OTTHUMG00000019178.2 +13467 chr10 ENSEMBL gene 121949412 121949487 76.0 - 0 ENSG00000273767.1 misc_RNA RF02219 3 +13468 chr10 HAVANA gene 121928312 121951965 1172.0 + 0 ENSG00000226864.2 transcribed_unitary_pseudogene ATE1-AS1 2 OTTHUMG00000019179.2 +13469 chr10 HAVANA gene 121956782 121957098 317.0 + 0 ENSG00000276742.1 antisense AL731566.2 2 OTTHUMG00000186564.1 +13470 chr10 HAVANA gene 121965764 121967700 1937.0 + 0 ENSG00000273891.1 antisense AL731566.1 2 OTTHUMG00000186565.1 +13471 chr10 HAVANA gene 121957088 121975217 3546.0 - 0 ENSG00000107672.14 protein_coding NSMCE4A 2 OTTHUMG00000019180.1 +13472 chr10 HAVANA gene 122017982 122019160 817.0 - 0 ENSG00000285715.1 antisense AC063960.1 2 OTTHUMG00000193243.2 +13473 chr10 HAVANA gene 122145106 122155176 2683.0 - 0 ENSG00000285973.1 antisense AC063960.2 2 OTTHUMG00000192718.2 +13474 chr10 HAVANA gene 121989174 122254545 18844.0 + 0 ENSG00000138162.18 protein_coding TACC2 1 OTTHUMG00000019181.7 +13475 chr10 HAVANA gene 122271306 122338162 2406.0 + 0 ENSG00000138152.8 protein_coding BTBD16 2 OTTHUMG00000019182.4 +13476 chr10 ENSEMBL gene 122345690 122345793 104.0 + 0 ENSG00000202245.1 snRNA RNU6-728P 3 +13477 chr10 ENSEMBL gene 122416965 122417067 103.0 + 0 ENSG00000265442.1 miRNA MIR3941 3 +13478 chr10 HAVANA gene 122374696 122442602 23986.0 + 0 ENSG00000107679.14 protein_coding PLEKHA1 2 OTTHUMG00000019184.7 ncRNA_host +13479 chr10 HAVANA gene 122454653 122457352 818.0 + 0 ENSG00000254636.1 protein_coding ARMS2 2 OTTHUMG00000048232.2 +13480 chr10 HAVANA gene 122435924 122461383 2945.0 - 0 ENSG00000285955.1 antisense BX842242.1 2 OTTHUMG00000193378.1 +13481 chr10 HAVANA gene 122458551 122514908 2279.0 + 0 ENSG00000166033.12 protein_coding HTRA1 2 OTTHUMG00000019186.3 +13482 chr10 HAVANA gene 122560665 122643736 8073.0 + 0 ENSG00000187908.17 protein_coding DMBT1 2 OTTHUMG00000019185.3 +13483 chr10 HAVANA gene 122697709 122699822 1064.0 - 0 ENSG00000183559.11 protein_coding C10orf120 1 OTTHUMG00000019187.1 +13484 chr10 HAVANA gene 122729429 122826868 8141.0 + 0 ENSG00000176584.18 transcribed_unprocessed_pseudogene DMBT1P1 1 OTTHUMG00000185790.4 pseudo_consens +13485 chr10 HAVANA gene 122832149 122850793 3464.0 - 0 ENSG00000138161.13 protein_coding CUZD1 2 OTTHUMG00000019195.4 overlapping_locus +13486 chr10 HAVANA gene 122849078 122879641 1177.0 - 0 ENSG00000213185.6 protein_coding FAM24B 2 OTTHUMG00000019194.1 overlapping_locus +13487 chr10 HAVANA gene 122879681 122898615 2135.0 + 0 ENSG00000255624.3 transcribed_processed_pseudogene AC073585.1 1 OTTHUMG00000019189.3 pseudo_consens +13488 chr10 HAVANA gene 122910701 122913111 596.0 + 0 ENSG00000203795.2 protein_coding FAM24A 2 OTTHUMG00000019193.1 +13489 chr10 HAVANA gene 122930903 122954403 3173.0 - 0 ENSG00000119965.12 protein_coding C10orf88 2 OTTHUMG00000019190.2 +13490 chr10 HAVANA gene 122954381 122997513 6118.0 + 0 ENSG00000179988.14 protein_coding PSTK 2 OTTHUMG00000019191.3 +13491 chr10 HAVANA gene 122990806 123008817 4934.0 - 0 ENSG00000095574.11 protein_coding IKZF5 2 OTTHUMG00000019192.2 +13492 chr10 HAVANA gene 123008979 123058311 6255.0 + 0 ENSG00000196177.12 protein_coding ACADSB 1 OTTHUMG00000019200.4 +13493 chr10 HAVANA gene 123135962 123137741 1173.0 + 0 ENSG00000188620.9 protein_coding HMX3 2 OTTHUMG00000019199.4 +13494 chr10 HAVANA gene 123148122 123150672 1628.0 + 0 ENSG00000188816.3 protein_coding HMX2 2 OTTHUMG00000019198.1 +13495 chr10 HAVANA gene 123154277 123170467 8300.0 + 0 ENSG00000154473.17 protein_coding BUB3 1 OTTHUMG00000019197.4 +13496 chr10 HAVANA gene 123171535 123171875 341.0 - 0 ENSG00000227586.5 processed_pseudogene RPS26P39 1 OTTHUMG00000019196.1 pseudo_consens +13497 chr10 HAVANA gene 123323422 123323586 165.0 - 0 ENSG00000270902.1 processed_pseudogene AL160290.3 1 OTTHUMG00000184678.1 pseudo_consens +13498 chr10 HAVANA gene 123425713 123427640 416.0 - 0 ENSG00000225152.1 lincRNA AL160290.1 1 OTTHUMG00000019201.1 +13499 chr10 HAVANA gene 123356450 123517708 1245.0 + 0 ENSG00000230131.5 lincRNA AL160290.2 2 OTTHUMG00000019202.1 +13500 chr10 HAVANA gene 123574227 123583767 438.0 + 0 ENSG00000234542.1 lincRNA AL357127.1 2 OTTHUMG00000019203.1 +13501 chr10 HAVANA gene 123666355 123694607 7514.0 + 0 ENSG00000154478.3 protein_coding GPR26 2 OTTHUMG00000019204.1 +13502 chr10 HAVANA gene 123776670 123777749 806.0 + 0 ENSG00000231138.1 antisense AC009987.1 1 OTTHUMG00000019205.1 +13503 chr10 HAVANA gene 123913574 123931597 389.0 - 0 ENSG00000234677.1 sense_intronic AC068058.1 1 OTTHUMG00000019207.1 overlapping_locus +13504 chr10 HAVANA gene 123706207 123940267 4859.0 - 0 ENSG00000121898.12 protein_coding CPXM2 2 OTTHUMG00000019206.2 overlapping_locus +13505 chr10 HAVANA gene 123991910 123992669 760.0 + 0 ENSG00000213438.2 processed_pseudogene YBX2P1 1 OTTHUMG00000019210.1 pseudo_consens +13506 chr10 HAVANA gene 124004304 124004828 525.0 - 0 ENSG00000232334.1 processed_pseudogene AL683842.1 2 OTTHUMG00000019209.1 +13507 chr10 HAVANA gene 124007666 124093607 6554.0 - 0 ENSG00000182022.17 protein_coding CHST15 2 OTTHUMG00000019208.4 +13508 chr10 HAVANA gene 124397303 124418976 3388.0 - 0 ENSG00000065154.11 protein_coding OAT 2 OTTHUMG00000019213.1 +13509 chr10 HAVANA gene 124447152 124450048 1638.0 + 0 ENSG00000271434.3 processed_transcript AL445237.1 2 OTTHUMG00000019211.13 +13510 chr10 HAVANA gene 124445239 124450184 3364.0 - 0 ENSG00000229544.8 protein_coding NKX1-2 2 OTTHUMG00000185174.9 +13511 chr10 HAVANA gene 124489823 124490578 495.0 - 0 ENSG00000229455.2 processed_pseudogene RPS10P18 1 OTTHUMG00000019212.3 pseudo_consens +13512 chr10 HAVANA gene 124461834 124617888 4064.0 + 0 ENSG00000107902.13 protein_coding LHPP 2 OTTHUMG00000019214.1 +13513 chr10 HAVANA gene 124623353 124624079 727.0 + 0 ENSG00000278831.1 antisense AL513190.1 2 OTTHUMG00000186568.1 +13514 chr10 HAVANA gene 124703625 124714217 1760.0 + 0 ENSG00000233334.3 antisense FAM53B-AS1 1 OTTHUMG00000019216.3 +13515 chr10 HAVANA gene 124619292 124744269 6424.0 - 0 ENSG00000189319.13 protein_coding FAM53B 1 OTTHUMG00000019215.2 overlapping_locus +13516 chr10 ENSEMBL gene 124766196 124766297 102.0 + 0 ENSG00000199466.1 misc_RNA RF00019 3 +13517 chr10 HAVANA gene 124617080 124791727 3422.0 - 0 ENSG00000258539.1 protein_coding AC068896.1 2 OTTHUMG00000171144.1 overlapping_locus +13518 chr10 HAVANA gene 124748149 124791870 4225.0 - 0 ENSG00000203791.14 protein_coding EEF1AKMT2 2 OTTHUMG00000019217.4 overlapping_locus +13519 chr10 ENSEMBL gene 124814958 124815062 105.0 - 0 ENSG00000207494.1 misc_RNA RF00019 3 +13520 chr10 HAVANA gene 124801785 124836670 2992.0 + 0 ENSG00000165660.7 protein_coding ABRAXAS2 2 OTTHUMG00000019218.2 +13521 chr10 HAVANA gene 124867510 124868326 764.0 + 0 ENSG00000214807.2 processed_pseudogene NPM1P31 1 OTTHUMG00000019219.1 pseudo_consens +13522 chr10 HAVANA gene 124917143 124942881 555.0 + 0 ENSG00000249456.1 sense_overlapping AL731577.2 2 OTTHUMG00000019222.1 overlapping_locus +13523 chr10 HAVANA gene 124945204 124946432 830.0 - 0 ENSG00000226899.1 antisense AL731577.1 2 OTTHUMG00000019221.1 +13524 chr10 HAVANA gene 124942123 124988189 5993.0 + 0 ENSG00000019995.6 protein_coding ZRANB1 2 OTTHUMG00000019223.1 overlapping_locus +13525 chr10 HAVANA gene 124996064 125001491 5428.0 + 0 ENSG00000273599.1 antisense AL731571.1 2 OTTHUMG00000186571.1 +13526 chr10 ENSEMBL gene 125032783 125032870 88.0 - 0 ENSG00000264572.1 miRNA MIR4296 3 +13527 chr10 HAVANA gene 124984317 125161170 10946.0 - 0 ENSG00000175029.16 protein_coding CTBP2 2 OTTHUMG00000019224.8 ncRNA_host +13528 chr10 HAVANA gene 125162379 125162971 593.0 + 0 ENSG00000282787.1 lincRNA AL157888.1 2 OTTHUMG00000191405.1 +13529 chr10 HAVANA gene 125166677 125166937 261.0 + 0 ENSG00000214298.3 processed_pseudogene MRPS21P6 1 OTTHUMG00000019225.1 pseudo_consens +13530 chr10 HAVANA gene 125473686 125473932 247.0 - 0 ENSG00000233135.1 unprocessed_pseudogene RPS27P18 1 OTTHUMG00000019226.1 pseudo_consens +13531 chr10 HAVANA gene 125574371 125578445 749.0 + 0 ENSG00000237675.5 antisense TEX36-AS1 2 OTTHUMG00000019227.1 +13532 chr10 HAVANA gene 125666875 125667950 1076.0 - 0 ENSG00000214297.3 processed_pseudogene ALDOAP2 1 OTTHUMG00000019228.2 pseudo_consens,overlapping_locus +13533 chr10 HAVANA gene 125576522 125683144 1308.0 - 0 ENSG00000175018.12 protein_coding TEX36 1 OTTHUMG00000019229.4 overlapping_locus +13534 chr10 HAVANA gene 125683229 125709677 4558.0 + 0 ENSG00000228021.7 processed_transcript AL158835.1 1 OTTHUMG00000019230.5 +13535 chr10 HAVANA gene 125718771 125719365 300.0 - 0 ENSG00000234134.1 sense_intronic AL158835.2 1 OTTHUMG00000019232.1 overlapping_locus +13536 chr10 HAVANA gene 125700436 125719566 3432.0 - 0 ENSG00000224023.10 lincRNA FLJ37035 1 OTTHUMG00000019231.4 overlapping_locus +13537 chr10 HAVANA gene 125707416 125749525 565.0 - 0 ENSG00000280561.1 antisense AL158835.3 2 OTTHUMG00000019234.4 overlapping_locus +13538 chr10 HAVANA gene 125725634 125752110 1989.0 - 0 ENSG00000236991.6 antisense EDRF1-AS1 2 OTTHUMG00000189700.1 overlapping_locus +13539 chr10 HAVANA gene 125719515 125764143 7741.0 + 0 ENSG00000107938.17 protein_coding EDRF1 1 OTTHUMG00000019233.6 +13540 chr10 HAVANA gene 125766453 125775821 1919.0 - 0 ENSG00000154485.4 protein_coding MMP21 2 OTTHUMG00000019235.1 +13541 chr10 ENSEMBL gene 125819740 125819822 83.0 + 0 ENSG00000265092.1 miRNA MIR4484 3 +13542 chr10 HAVANA gene 125784980 125823285 9532.0 - 0 ENSG00000188690.13 protein_coding UROS 2 OTTHUMG00000019236.13 +13543 chr10 HAVANA gene 125823546 125853695 4498.0 + 0 ENSG00000107949.16 protein_coding BCCIP 2 OTTHUMG00000019237.2 +13544 chr10 ENSEMBL gene 125869295 125869576 282.0 + 0 ENSG00000277371.1 misc_RNA RF00017 3 +13545 chr10 ENSEMBL gene 125890566 125890678 113.0 - 0 ENSG00000222629.1 snRNA RNU2-42P 3 +13546 chr10 HAVANA gene 125836337 125896436 3948.0 - 0 ENSG00000089876.11 protein_coding DHX32 2 OTTHUMG00000019238.3 ncRNA_host +13547 chr10 HAVANA gene 125960208 125960406 199.0 - 0 ENSG00000234016.1 processed_pseudogene GNG10P1 1 OTTHUMG00000019240.1 pseudo_consens +13548 chr10 HAVANA gene 125972188 125973126 428.0 - 0 ENSG00000233409.1 antisense FANK1-AS1 1 OTTHUMG00000019239.1 +13549 chr10 HAVANA gene 125896539 126009592 3384.0 + 0 ENSG00000203780.10 protein_coding FANK1 2 OTTHUMG00000019241.4 +13550 chr10 ENSEMBL gene 126145474 126145582 109.0 - 0 ENSG00000222740.1 rRNA_pseudogene RNA5SP328 3 +13551 chr10 HAVANA gene 126272818 126273411 594.0 + 0 ENSG00000213170.3 processed_pseudogene SAR1AP2 1 OTTHUMG00000019242.1 pseudo_consens +13552 chr10 HAVANA gene 126012381 126388455 9860.0 - 0 ENSG00000148848.14 protein_coding ADAM12 2 OTTHUMG00000019243.3 +13553 chr10 HAVANA gene 126413869 126421879 1168.0 - 0 ENSG00000235180.1 lincRNA LINC00601 2 OTTHUMG00000019244.1 +13554 chr10 HAVANA gene 126424997 126670446 5255.0 - 0 ENSG00000154493.18 protein_coding C10orf90 1 OTTHUMG00000019245.7 +13555 chr10 ENSEMBL gene 126779702 126779774 73.0 - 0 ENSG00000199321.1 snoRNA RF00271 3 +13556 chr10 HAVANA gene 127013501 127026475 750.0 - 0 ENSG00000232935.2 antisense AL359094.2 2 OTTHUMG00000019246.2 overlapping_locus +13557 chr10 HAVANA gene 126988095 127026507 4231.0 - 0 ENSG00000223528.7 antisense AL359094.1 1 OTTHUMG00000019247.5 overlapping_locus +13558 chr10 HAVANA gene 127135426 127196158 4407.0 - 0 ENSG00000188916.8 protein_coding INSYN2 2 OTTHUMG00000019248.2 +13559 chr10 HAVANA gene 126905409 127452517 8142.0 + 0 ENSG00000150760.12 protein_coding DOCK1 2 OTTHUMG00000019249.4 +13560 chr10 HAVANA gene 127549369 127552639 270.0 + 0 ENSG00000214285.2 protein_coding NPS 2 OTTHUMG00000188145.2 +13561 chr10 HAVANA gene 127734562 127736996 2435.0 - 0 ENSG00000279725.1 TEC AL391005.1 2 OTTHUMG00000186887.1 +13562 chr10 HAVANA gene 127737235 127741186 3217.0 + 0 ENSG00000186766.7 protein_coding FOXI2 2 OTTHUMG00000019250.2 +13563 chr10 HAVANA gene 127867881 127868487 607.0 + 0 ENSG00000270778.1 processed_pseudogene BUB1P1 1 OTTHUMG00000184638.1 pseudo_consens +13564 chr10 HAVANA gene 127877841 127892947 1152.0 - 0 ENSG00000180745.4 protein_coding CLRN3 2 OTTHUMG00000019253.1 +13565 chr10 HAVANA gene 127929376 127934517 748.0 - 0 ENSG00000232259.1 lincRNA AL158166.2 1 OTTHUMG00000019251.1 +13566 chr10 HAVANA gene 127934698 127936167 371.0 + 0 ENSG00000227076.1 sense_intronic AL158166.1 1 OTTHUMG00000019252.1 overlapping_locus +13567 chr10 HAVANA gene 127907061 128085855 11235.0 + 0 ENSG00000132334.16 protein_coding PTPRE 2 OTTHUMG00000019254.3 overlapping_locus +13568 chr10 HAVANA gene 128096659 128126385 12807.0 - 0 ENSG00000148773.13 protein_coding MKI67 2 OTTHUMG00000019255.1 +13569 chr10 HAVANA gene 128181032 128317726 3190.0 + 0 ENSG00000280953.2 lincRNA LINC01163 2 OTTHUMG00000189527.1 +13570 chr10 HAVANA gene 128316282 128320214 346.0 - 0 ENSG00000234640.1 lincRNA AL390763.1 2 OTTHUMG00000019256.1 +13571 chr10 HAVANA gene 128912879 128916271 450.0 + 0 ENSG00000224190.1 lincRNA AL355537.1 2 OTTHUMG00000019258.1 +13572 chr10 HAVANA gene 128958772 128960062 375.0 - 0 ENSG00000232985.1 lincRNA AL355537.2 1 OTTHUMG00000019257.1 +13573 chr10 HAVANA gene 129278251 129291722 475.0 + 0 ENSG00000225424.1 lincRNA AL391869.1 1 OTTHUMG00000019260.1 +13574 chr10 HAVANA gene 129372194 129380753 1267.0 - 0 ENSG00000285615.1 lincRNA AL359508.1 2 OTTHUMG00000193075.1 +13575 chr10 HAVANA gene 129693722 129702117 2345.0 - 0 ENSG00000237224.4 antisense AL157832.2 2 OTTHUMG00000019262.5 +13576 chr10 HAVANA gene 129467184 129768007 3557.0 + 0 ENSG00000170430.9 protein_coding MGMT 2 OTTHUMG00000019261.3 +13577 chr10 HAVANA gene 129768844 129769435 495.0 + 0 ENSG00000227374.1 lincRNA AL157832.1 2 OTTHUMG00000019263.1 +13578 chr10 HAVANA gene 129784983 129806971 1005.0 + 0 ENSG00000283141.1 lincRNA AL157832.3 2 OTTHUMG00000019264.3 +13579 chr10 HAVANA gene 129837505 129837794 290.0 + 0 ENSG00000275327.1 antisense AL354950.2 2 OTTHUMG00000186589.1 +13580 chr10 ENSEMBL gene 129843299 129843374 76.0 - 0 ENSG00000266676.1 miRNA MIR4297 3 +13581 chr10 HAVANA gene 129845328 129845895 568.0 + 0 ENSG00000275005.1 antisense AL354950.1 2 OTTHUMG00000186590.1 +13582 chr10 HAVANA gene 129835283 129963841 4623.0 - 0 ENSG00000108001.13 protein_coding EBF3 2 OTTHUMG00000019265.3 ncRNA_host +13583 chr10 HAVANA gene 130104569 130104998 430.0 - 0 ENSG00000277218.1 sense_intronic AL139123.1 2 OTTHUMG00000186596.1 overlapping_locus +13584 chr10 HAVANA gene 130106046 130108481 2436.0 + 0 ENSG00000233122.2 processed_pseudogene CTAGE7P 1 OTTHUMG00000019269.3 pseudo_consens +13585 chr10 HAVANA gene 130020025 130110817 6794.0 - 0 ENSG00000237489.4 protein_coding C10orf143 2 OTTHUMG00000019268.4 overlapping_locus +13586 chr10 HAVANA gene 130131770 130132241 472.0 - 0 ENSG00000233319.1 processed_pseudogene PPIAP32 1 OTTHUMG00000019270.2 pseudo_consens +13587 chr10 HAVANA gene 130136399 130184521 5173.0 + 0 ENSG00000108010.11 protein_coding GLRX3 2 OTTHUMG00000019267.4 +13588 chr10 HAVANA gene 130282445 130286604 2055.0 - 0 ENSG00000276375.1 unprocessed_pseudogene AL157712.2 2 OTTHUMG00000187866.1 +13589 chr10 HAVANA gene 130213488 130483193 1278.0 + 0 ENSG00000236303.3 lincRNA AL157712.1 2 OTTHUMG00000019273.4 +13590 chr10 ENSEMBL gene 130505106 130505201 96.0 + 0 ENSG00000222997.1 misc_RNA RF00019 3 +13591 chr10 HAVANA gene 130525712 130537406 836.0 + 0 ENSG00000285529.1 lincRNA AC016816.1 2 OTTHUMG00000192768.2 +13592 chr10 ENSEMBL gene 130962588 130962668 81.0 - 0 ENSG00000264803.1 miRNA MIR378C 3 +13593 chr10 HAVANA gene 131095218 131095777 472.0 + 0 ENSG00000230098.1 antisense TCERG1L-AS1 2 OTTHUMG00000019275.1 +13594 chr10 HAVANA gene 131092391 131311721 5258.0 - 0 ENSG00000176769.9 protein_coding TCERG1L 2 OTTHUMG00000019276.3 +13595 chr10 HAVANA gene 131772398 131790199 3384.0 - 0 ENSG00000189275.3 lincRNA LINC01164 2 OTTHUMG00000186599.1 +13596 chr10 HAVANA gene 131831910 131833508 1599.0 - 0 ENSG00000280446.1 TEC AL607033.1 2 OTTHUMG00000176205.2 +13597 chr10 HAVANA gene 131891640 131895297 1535.0 + 0 ENSG00000283095.1 lincRNA FP565171.1 2 OTTHUMG00000191605.1 +13598 chr10 HAVANA gene 131900644 131959834 7756.0 + 0 ENSG00000175470.19 protein_coding PPP2R2D 2 OTTHUMG00000019277.6 +13599 chr10 HAVANA gene 131971202 131971533 332.0 + 0 ENSG00000277959.1 antisense AL162274.2 2 OTTHUMG00000186601.1 +13600 chr10 HAVANA gene 131980240 131981337 1098.0 + 0 ENSG00000273521.1 antisense AL162274.1 2 OTTHUMG00000186612.1 +13601 chr10 HAVANA gene 131966455 131982013 5325.0 - 0 ENSG00000176171.11 protein_coding BNIP3 2 OTTHUMG00000019278.3 +13602 chr10 HAVANA gene 131996738 131999846 3109.0 + 0 ENSG00000279982.1 TEC AL162274.3 2 OTTHUMG00000186608.1 +13603 chr10 HAVANA gene 132104671 132184809 7608.0 + 0 ENSG00000188385.11 protein_coding JAKMIP3 2 OTTHUMG00000150167.3 +13604 chr10 HAVANA gene 132181225 132185962 798.0 - 0 ENSG00000235010.1 antisense AL512622.1 2 OTTHUMG00000019281.1 +13605 chr10 HAVANA gene 132186900 132205776 3176.0 + 0 ENSG00000151640.12 protein_coding DPYSL4 2 OTTHUMG00000019283.2 +13606 chr10 HAVANA gene 132207492 132331847 3543.0 - 0 ENSG00000165752.16 protein_coding STK32C 2 OTTHUMG00000019285.9 +13607 chr10 HAVANA gene 132332154 132379918 9910.0 + 0 ENSG00000148814.17 protein_coding LRRC27 2 OTTHUMG00000019284.4 +13608 chr10 HAVANA gene 132397168 132417863 2651.0 + 0 ENSG00000171813.13 protein_coding PWWP2B 2 OTTHUMG00000019286.4 +13609 chr10 HAVANA gene 132419083 132420953 297.0 + 0 ENSG00000231705.1 lincRNA AL451069.2 1 OTTHUMG00000019287.1 +13610 chr10 HAVANA gene 132433733 132441484 1013.0 - 0 ENSG00000234311.1 antisense AL451069.3 2 OTTHUMG00000019288.1 +13611 chr10 HAVANA gene 132444327 132449408 2040.0 + 0 ENSG00000180066.9 lincRNA C10orf91 2 OTTHUMG00000019289.3 +13612 chr10 HAVANA gene 132511626 132518191 634.0 - 0 ENSG00000226900.1 lincRNA AL451069.1 2 OTTHUMG00000019290.1 +13613 chr10 HAVANA gene 132520827 132522449 1623.0 - 0 ENSG00000229081.1 antisense LINC01165 2 OTTHUMG00000019291.1 +13614 chr10 HAVANA gene 132537820 132783480 3706.0 + 0 ENSG00000068383.18 protein_coding INPP5A 2 OTTHUMG00000019293.5 +13615 chr10 HAVANA gene 132783179 132786052 2675.0 - 0 ENSG00000148826.8 protein_coding NKX6-2 2 OTTHUMG00000019294.4 +13616 chr10 HAVANA gene 132808392 132942823 10698.0 - 0 ENSG00000171811.13 protein_coding CFAP46 1 OTTHUMG00000019292.7 +13617 chr10 HAVANA gene 132961340 132962237 604.0 - 0 ENSG00000224758.1 lincRNA LINC01167 1 OTTHUMG00000019300.1 overlapping_locus +13618 chr10 HAVANA gene 132943967 132965289 2619.0 - 0 ENSG00000232903.2 lincRNA LINC01166 2 OTTHUMG00000019299.1 overlapping_locus +13619 chr10 HAVANA gene 132965534 132976354 5254.0 + 0 ENSG00000240707.2 lincRNA LINC01168 2 OTTHUMG00000157745.2 +13620 chr10 HAVANA gene 133083073 133088491 5419.0 - 0 ENSG00000256925.2 antisense ADGRA1-AS1 2 OTTHUMG00000019301.3 +13621 chr10 HAVANA gene 133070929 133131675 6503.0 + 0 ENSG00000197177.15 protein_coding ADGRA1 1 OTTHUMG00000019304.5 +13622 chr10 HAVANA gene 133144612 133145304 693.0 - 0 ENSG00000235264.1 processed_pseudogene RPL5P28 1 OTTHUMG00000019305.1 pseudo_consens +13623 chr10 HAVANA gene 133160447 133226412 7985.0 + 0 ENSG00000171798.17 protein_coding KNDC1 2 OTTHUMG00000019303.6 +13624 chr10 HAVANA gene 133230274 133231558 1157.0 + 0 ENSG00000171794.3 protein_coding UTF1 2 OTTHUMG00000019302.1 +13625 chr10 HAVANA gene 133237404 133241929 2911.0 + 0 ENSG00000151650.7 protein_coding VENTX 2 OTTHUMG00000019307.4 +13626 chr10 ENSEMBL gene 133247511 133247620 110.0 - 0 ENSG00000284219.1 miRNA MIR202 3 +13627 chr10 HAVANA gene 133246478 133247891 822.0 - 0 ENSG00000166917.10 antisense MIR202HG 1 OTTHUMG00000170605.1 ncRNA_host +13628 chr10 HAVANA gene 133257144 133257551 408.0 - 0 ENSG00000273980.1 lincRNA AL592071.1 2 OTTHUMG00000186614.1 +13629 chr10 HAVANA gene 133262403 133276868 4780.0 - 0 ENSG00000151651.15 protein_coding ADAM8 1 OTTHUMG00000019309.6 +13630 chr10 HAVANA gene 133295187 133295977 626.0 - 0 ENSG00000235245.1 antisense AL360181.2 2 OTTHUMG00000046186.1 overlapping_locus +13631 chr10 HAVANA gene 133278630 133312337 7697.0 - 0 ENSG00000130640.13 protein_coding TUBGCP2 2 OTTHUMG00000019319.6 overlapping_locus +13632 chr10 HAVANA gene 133308475 133313162 2728.0 + 0 ENSG00000198546.14 protein_coding ZNF511 2 OTTHUMG00000019317.2 overlapping_locus +13633 chr10 HAVANA gene 133324072 133336935 3010.0 - 0 ENSG00000130643.8 protein_coding CALY 2 OTTHUMG00000019310.2 +13634 chr10 HAVANA gene 133344643 133344906 264.0 - 0 ENSG00000230306.1 processed_pseudogene BANF1P2 1 OTTHUMG00000019314.1 pseudo_consens +13635 chr10 HAVANA gene 133345754 133350726 184.0 - 0 ENSG00000226699.1 antisense AL360181.1 2 OTTHUMG00000019313.1 +13636 chr10 HAVANA gene 133309410 133352529 1044.0 + 0 ENSG00000283496.1 protein_coding ZNF511-PRAP1 2 OTTHUMG00000191874.1 overlapping_locus +13637 chr10 HAVANA gene 133347146 133352683 971.0 + 0 ENSG00000165828.14 protein_coding PRAP1 2 OTTHUMG00000019312.2 overlapping_locus +13638 chr10 HAVANA gene 133355154 133358035 1284.0 - 0 ENSG00000148803.11 protein_coding FUOM 2 OTTHUMG00000019315.3 +13639 chr10 ENSEMBL gene 133371556 133371663 108.0 - 0 ENSG00000265395.1 miRNA MIR3944 3 +13640 chr10 HAVANA gene 133362480 133373689 1617.0 - 0 ENSG00000127884.4 protein_coding ECHS1 2 OTTHUMG00000019320.1 ncRNA_host +13641 chr10 HAVANA gene 133374736 133374869 134.0 - 0 ENSG00000274685.1 lincRNA AL360181.4 2 OTTHUMG00000186617.1 +13642 chr10 HAVANA gene 133379234 133391694 2277.0 + 0 ENSG00000148832.15 protein_coding PAOX 2 OTTHUMG00000019318.4 overlapping_locus +13643 chr10 HAVANA gene 133390834 133420495 1605.0 + 0 ENSG00000254536.1 protein_coding AL360181.3 1 OTTHUMG00000019323.2 overlapping_locus +13644 chr10 HAVANA gene 133394094 133421307 4095.0 + 0 ENSG00000148824.18 protein_coding MTG1 2 OTTHUMG00000166564.3 overlapping_locus +13645 chr10 HAVANA gene 133420666 133424572 3128.0 - 0 ENSG00000203772.7 protein_coding SPRN 2 OTTHUMG00000019324.2 +13646 chr10 HAVANA gene 133430394 133431318 925.0 - 0 ENSG00000273327.1 unprocessed_pseudogene OR6L2P 2 OTTHUMG00000185916.1 +13647 chr10 HAVANA gene 133481238 133481770 533.0 + 0 ENSG00000273336.1 unprocessed_pseudogene OR7M1P 2 OTTHUMG00000185917.1 +13648 chr10 HAVANA gene 133453928 133523558 8015.0 + 0 ENSG00000214279.13 protein_coding SCART1 2 OTTHUMG00000019326.5 overlapping_locus +13649 chr10 HAVANA gene 133526259 133527513 1255.0 - 0 ENSG00000278518.1 antisense AL161645.1 2 OTTHUMG00000186621.1 +13650 chr10 HAVANA gene 133520406 133561220 9621.0 + 0 ENSG00000130649.9 protein_coding CYP2E1 2 OTTHUMG00000019322.4 overlapping_locus +13651 chr10 HAVANA gene 133553901 133569835 4070.0 - 0 ENSG00000171772.16 protein_coding SYCE1 2 OTTHUMG00000019321.4 +13652 chr10 HAVANA gene 133575122 133576031 910.0 - 0 ENSG00000233685.1 unprocessed_pseudogene OR6L1P 2 OTTHUMG00000019327.1 +13653 chr10 HAVANA gene 133623895 133626795 2097.0 - 0 ENSG00000225899.7 protein_coding FRG2B 2 OTTHUMG00000019328.3 +13654 chr10 HAVANA gene 133637408 133637892 485.0 - 0 ENSG00000213543.2 processed_pseudogene RARRES2P2 1 OTTHUMG00000019329.1 pseudo_consens +13655 chr10 HAVANA gene 133640789 133642894 2106.0 + 0 ENSG00000233435.2 processed_pseudogene AGGF1P2 1 OTTHUMG00000019330.2 pseudo_consens +13656 chr10 HAVANA gene 133657235 133660635 774.0 - 0 ENSG00000230468.1 unprocessed_pseudogene CLUHP5 2 OTTHUMG00000019331.1 +13657 chr10 HAVANA gene 133664429 133665106 678.0 + 0 ENSG00000279626.1 unprocessed_pseudogene DUX4L28 1 OTTHUMG00000189291.1 pseudo_consens +13658 chr10 HAVANA gene 133667151 133668419 1269.0 + 0 ENSG00000280337.1 unprocessed_pseudogene DUX4L25 1 OTTHUMG00000189292.1 pseudo_consens +13659 chr10 HAVANA gene 133670450 133671718 1269.0 + 0 ENSG00000274599.2 unprocessed_pseudogene DUX4L24 1 OTTHUMG00000189293.1 pseudo_consens +13660 chr10 HAVANA gene 133673749 133675017 1269.0 + 0 ENSG00000276964.1 unprocessed_pseudogene DUX4L23 1 OTTHUMG00000189294.1 pseudo_consens +13661 chr10 HAVANA gene 133677059 133678327 1269.0 + 0 ENSG00000277274.1 unprocessed_pseudogene DUX4L22 1 OTTHUMG00000189295.1 pseudo_consens +13662 chr10 HAVANA gene 133680369 133681637 1269.0 + 0 ENSG00000275610.1 unprocessed_pseudogene DUX4L21 1 OTTHUMG00000189296.1 pseudo_consens +13663 chr10 HAVANA gene 133683668 133684936 1269.0 + 0 ENSG00000276164.1 unprocessed_pseudogene DUX4L20 1 OTTHUMG00000189297.1 pseudo_consens +13664 chr10 HAVANA gene 133740606 133741284 679.0 + 0 ENSG00000237635.2 unprocessed_pseudogene DUX4L29 2 OTTHUMG00000019339.3 +13665 chr10 HAVANA gene 133743332 133744598 1267.0 + 0 ENSG00000278664.1 unprocessed_pseudogene DUX4L10 1 OTTHUMG00000019332.5 pseudo_consens +13666 chr10 HAVANA gene 133746641 133747907 1267.0 + 0 ENSG00000278761.1 unprocessed_pseudogene DUX4L11 1 OTTHUMG00000170701.3 pseudo_consens +13667 chr10 HAVANA gene 133749950 133751216 1267.0 + 0 ENSG00000278790.1 unprocessed_pseudogene DUX4L12 1 OTTHUMG00000185266.3 pseudo_consens +13668 chr10 HAVANA gene 133753250 133754516 1267.0 + 0 ENSG00000276046.1 unprocessed_pseudogene DUX4L13 1 OTTHUMG00000019335.4 pseudo_consens +13669 chr10 HAVANA gene 133756559 133757825 1267.0 + 0 ENSG00000276904.1 unprocessed_pseudogene DUX4L14 1 OTTHUMG00000019334.4 pseudo_consens +13670 chr10 HAVANA gene 133759859 133761125 1267.0 + 0 ENSG00000278641.1 unprocessed_pseudogene DUX4L15 1 OTTHUMG00000019336.4 pseudo_consens +13671 chr10 HAVANA gene 133778258 133778498 241.0 - 0 ENSG00000282875.1 processed_pseudogene BX322534.1 2 OTTHUMG00000191475.1 +13672 chr10 HAVANA gene 133778246 133778699 454.0 + 0 ENSG00000213147.3 processed_pseudogene RPL23AP60 1 OTTHUMG00000019340.1 pseudo_consens +13673 chr11 HAVANA gene 75780 76143 364.0 + 0 ENSG00000253826.1 unprocessed_pseudogene WBP1LP10 1 OTTHUMG00000165075.1 pseudo_consens +13674 chr11 HAVANA gene 86649 87586 938.0 - 0 ENSG00000224777.3 unprocessed_pseudogene OR4F2P 2 OTTHUMG00000154192.2 +13675 chr11 HAVANA gene 112967 125927 723.0 - 0 ENSG00000254468.2 lincRNA AC069287.1 2 OTTHUMG00000165812.1 +13676 chr11 HAVANA gene 123312 126123 2741.0 + 0 ENSG00000270921.1 processed_pseudogene CICP23 1 OTTHUMG00000184851.1 pseudo_consens +13677 chr11 HAVANA gene 127204 139612 3823.0 - 0 ENSG00000230724.9 lincRNA LINC01001 2 OTTHUMG00000165114.4 +13678 chr11 ENSEMBL gene 152999 153102 104.0 - 0 ENSG00000222225.1 snRNA RNU6-447P 3 +13679 chr11 HAVANA gene 129279 186136 589.0 + 0 ENSG00000255229.1 antisense AC069287.3 2 OTTHUMG00000165538.1 +13680 chr11 HAVANA gene 193080 194573 431.0 + 0 ENSG00000188076.2 protein_coding SCGB1C1 2 OTTHUMG00000165539.1 +13681 chr11 HAVANA gene 196738 200261 3110.0 + 0 ENSG00000177947.13 protein_coding ODF3 2 OTTHUMG00000119073.2 +13682 chr11 HAVANA gene 203623 205470 574.0 + 0 ENSG00000254559.1 antisense AC069287.2 2 OTTHUMG00000165540.1 +13683 chr11 HAVANA gene 167784 207428 3868.0 - 0 ENSG00000177951.17 protein_coding BET1L 2 OTTHUMG00000119071.4 +13684 chr11 ENSEMBL gene 209336 209406 71.0 + 0 ENSG00000283920.1 miRNA MIR6743 3 +13685 chr11 HAVANA gene 207511 215113 6685.0 + 0 ENSG00000177963.14 protein_coding RIC8A 1 OTTHUMG00000119069.7 ncRNA_host +13686 chr11 HAVANA gene 215458 236931 5202.0 - 0 ENSG00000142082.14 protein_coding SIRT3 1 OTTHUMG00000119074.5 +13687 chr11 HAVANA gene 243099 243483 385.0 - 0 ENSG00000277290.1 processed_pseudogene AC136475.10 1 OTTHUMG00000187725.1 pseudo_consens +13688 chr11 HAVANA gene 236546 252984 4767.0 + 0 ENSG00000185627.17 protein_coding PSMD13 2 OTTHUMG00000119072.4 +13689 chr11 HAVANA gene 278365 285359 3207.0 + 0 ENSG00000174885.12 protein_coding NLRP6 2 OTTHUMG00000119070.3 +13690 chr11 HAVANA gene 287305 288987 860.0 + 0 ENSG00000255026.1 antisense AC136475.3 2 OTTHUMG00000165353.1 +13691 chr11 HAVANA gene 289135 296107 5260.0 + 0 ENSG00000142102.15 protein_coding PGGHG 1 OTTHUMG00000153218.4 +13692 chr11 HAVANA gene 298200 299526 736.0 - 0 ENSG00000206013.2 protein_coding IFITM5 2 OTTHUMG00000165355.1 +13693 chr11 HAVANA gene 303856 304144 289.0 - 0 ENSG00000255533.1 processed_pseudogene AC136475.6 1 OTTHUMG00000165356.1 pseudo_consens +13694 chr11 HAVANA gene 310139 311141 392.0 - 0 ENSG00000254910.1 antisense AC136475.2 2 OTTHUMG00000165358.1 +13695 chr11 HAVANA gene 307631 315272 1543.0 + 0 ENSG00000185201.16 protein_coding IFITM2 2 OTTHUMG00000165357.3 overlapping_locus +13696 chr11 HAVANA gene 313506 315272 1080.0 + 0 ENSG00000185885.15 protein_coding IFITM1 2 OTTHUMG00000165359.2 overlapping_locus +13697 chr11 HAVANA gene 321991 322426 280.0 + 0 ENSG00000255089.1 antisense AC136475.4 2 OTTHUMG00000165543.1 overlapping_locus +13698 chr11 HAVANA gene 322186 322727 386.0 - 0 ENSG00000270105.1 lincRNA AC136475.8 2 OTTHUMG00000184137.1 overlapping_locus +13699 chr11 HAVANA gene 318640 325631 1887.0 + 0 ENSG00000251661.3 antisense AC136475.1 2 OTTHUMG00000165541.2 overlapping_locus +13700 chr11 HAVANA gene 325703 326294 592.0 - 0 ENSG00000270030.1 lincRNA AC136475.7 2 OTTHUMG00000184138.1 overlapping_locus +13701 chr11 HAVANA gene 319669 327537 1348.0 - 0 ENSG00000142089.15 protein_coding IFITM3 1 OTTHUMG00000165542.2 overlapping_locus +13702 chr11 HAVANA gene 327171 330122 1277.0 + 0 ENSG00000255328.1 lincRNA AC136475.5 2 OTTHUMG00000165544.2 +13703 chr11 HAVANA gene 333192 333688 497.0 + 0 ENSG00000270972.1 lincRNA AC136475.9 2 OTTHUMG00000184167.1 +13704 chr11 HAVANA gene 369796 382116 3761.0 + 0 ENSG00000182272.11 protein_coding B4GALNT4 2 OTTHUMG00000119075.3 +13705 chr11 HAVANA gene 392614 404908 3787.0 + 0 ENSG00000184363.9 protein_coding PKP3 2 OTTHUMG00000119068.7 +13706 chr11 HAVANA gene 405716 417455 3496.0 - 0 ENSG00000185187.12 protein_coding SIGIRR 1 OTTHUMG00000165412.5 +13707 chr11 ENSEMBL gene 440399 440693 295.0 - 0 ENSG00000243562.3 misc_RNA RN7SL838P 3 +13708 chr11 HAVANA gene 417933 442011 6207.0 - 0 ENSG00000185101.12 protein_coding ANO9 2 OTTHUMG00000165446.2 ncRNA_host +13709 chr11 HAVANA gene 462930 463899 664.0 - 0 ENSG00000255237.1 antisense AC138230.1 2 OTTHUMG00000165470.1 +13710 chr11 HAVANA gene 448268 491399 6113.0 + 0 ENSG00000174915.11 protein_coding PTDSS2 2 OTTHUMG00000119087.5 +13711 chr11 HAVANA gene 494512 507300 7374.0 - 0 ENSG00000023191.16 protein_coding RNH1 2 OTTHUMG00000119086.9 +13712 chr11 HAVANA gene 528907 529659 547.0 + 0 ENSG00000254739.1 antisense AC137894.1 2 OTTHUMG00000165819.1 +13713 chr11 HAVANA gene 532242 537287 1854.0 - 0 ENSG00000174775.16 protein_coding HRAS 2 OTTHUMG00000131919.8 +13714 chr11 HAVANA gene 537527 554916 2769.0 + 0 ENSG00000161328.10 protein_coding LRRC56 2 OTTHUMG00000132003.1 +13715 chr11 HAVANA gene 557595 560107 2418.0 + 0 ENSG00000254815.5 antisense AP006284.1 2 OTTHUMG00000165116.2 +13716 chr11 HAVANA gene 554855 560779 2934.0 - 0 ENSG00000185522.8 protein_coding LMNTD2 1 OTTHUMG00000132005.4 +13717 chr11 HAVANA gene 560404 564021 2492.0 + 0 ENSG00000099849.14 protein_coding RASSF7 2 OTTHUMG00000132004.4 +13718 chr11 ENSEMBL gene 568089 568198 110.0 - 0 ENSG00000199038.1 miRNA MIR210 3 +13719 chr11 HAVANA gene 565660 568457 2321.0 - 0 ENSG00000247095.2 lincRNA MIR210HG 2 OTTHUMG00000165284.1 ncRNA_host +13720 chr11 HAVANA gene 576486 612222 5769.0 + 0 ENSG00000070047.11 protein_coding PHRF1 2 OTTHUMG00000165141.4 +13721 chr11 HAVANA gene 612553 615999 2628.0 - 0 ENSG00000185507.20 protein_coding IRF7 2 OTTHUMG00000132019.6 +13722 chr11 HAVANA gene 616565 626078 3873.0 - 0 ENSG00000099834.18 protein_coding CDHR5 2 OTTHUMG00000132018.5 +13723 chr11 HAVANA gene 626431 627143 366.0 - 0 ENSG00000070031.3 protein_coding SCT 2 OTTHUMG00000133313.4 +13724 chr11 HAVANA gene 637293 640706 1477.0 + 0 ENSG00000069696.6 protein_coding DRD4 2 OTTHUMG00000133312.2 +13725 chr11 HAVANA gene 665910 678391 912.0 + 0 ENSG00000255158.1 antisense AC131934.1 1 OTTHUMG00000165430.1 +13726 chr11 HAVANA gene 695428 705028 4071.0 + 0 ENSG00000177042.14 protein_coding TMEM80 1 OTTHUMG00000133307.7 overlapping_locus +13727 chr11 HAVANA gene 644233 706715 4452.0 - 0 ENSG00000177030.16 protein_coding DEAF1 1 OTTHUMG00000165363.7 +13728 chr11 HAVANA gene 708564 727047 532.0 - 0 ENSG00000269915.1 antisense AP006621.4 2 OTTHUMG00000183950.1 +13729 chr11 HAVANA gene 694438 727727 5693.0 + 0 ENSG00000177106.15 protein_coding EPS8L2 1 OTTHUMG00000165165.11 overlapping_locus +13730 chr11 HAVANA gene 747329 765024 3005.0 + 0 ENSG00000177156.10 protein_coding TALDO1 1 OTTHUMG00000133318.4 +13731 chr11 HAVANA gene 767220 777488 5510.0 - 0 ENSG00000177225.16 protein_coding GATD1 1 OTTHUMG00000133315.7 +13732 chr11 HAVANA gene 779617 780755 1139.0 + 0 ENSG00000279672.1 TEC AP006621.5 2 OTTHUMG00000186888.1 overlapping_locus +13733 chr11 HAVANA gene 781645 782105 284.0 + 0 ENSG00000255142.1 lincRNA AP006621.2 2 OTTHUMG00000165233.1 overlapping_locus +13734 chr11 HAVANA gene 777578 784297 1059.0 + 0 ENSG00000255284.1 lincRNA AP006621.3 2 OTTHUMG00000165232.1 overlapping_locus +13735 chr11 HAVANA gene 787104 790123 1649.0 - 0 ENSG00000184524.5 protein_coding CEND1 2 OTTHUMG00000133308.2 +13736 chr11 HAVANA gene 790475 798333 4647.0 - 0 ENSG00000177542.10 protein_coding SLC25A22 2 OTTHUMG00000133310.11 +13737 chr11 HAVANA gene 797511 799190 1680.0 + 0 ENSG00000274897.2 protein_coding PANO1 2 OTTHUMG00000189301.2 +13738 chr11 HAVANA gene 799179 809753 5869.0 - 0 ENSG00000177595.17 protein_coding PIDD1 2 OTTHUMG00000133306.3 +13739 chr11 ENSEMBL gene 811681 811814 134.0 + 0 ENSG00000199785.1 snoRNA SNORA52 3 +13740 chr11 HAVANA gene 809647 812880 1955.0 + 0 ENSG00000177600.8 protein_coding RPLP2 2 OTTHUMG00000133317.4 ncRNA_host +13741 chr11 HAVANA gene 818902 825573 3843.0 + 0 ENSG00000177666.16 protein_coding PNPLA2 2 OTTHUMG00000133309.4 +13742 chr11 HAVANA gene 826144 831991 3913.0 + 0 ENSG00000177685.16 protein_coding CRACR2B 2 OTTHUMG00000165267.7 +13743 chr11 HAVANA gene 823634 832883 792.0 - 0 ENSG00000255108.1 antisense AP006621.1 1 OTTHUMG00000165497.1 +13744 chr11 HAVANA gene 832843 839831 3938.0 + 0 ENSG00000177697.18 protein_coding CD151 1 OTTHUMG00000133311.8 +13745 chr11 HAVANA gene 837356 842545 1142.0 - 0 ENSG00000177700.5 protein_coding POLR2L 2 OTTHUMG00000133316.2 +13746 chr11 HAVANA gene 856880 859795 2061.0 - 0 ENSG00000250397.2 antisense AP006623.1 2 OTTHUMG00000165720.1 +13747 chr11 HAVANA gene 842808 867116 5841.0 + 0 ENSG00000214063.10 protein_coding TSPAN4 2 OTTHUMG00000133305.6 +13748 chr11 HAVANA gene 867860 915058 5984.0 - 0 ENSG00000177830.17 protein_coding CHID1 2 OTTHUMG00000133314.5 +13749 chr11 ENSEMBL gene 948421 948524 104.0 + 0 ENSG00000222561.1 snRNA RNU6-1025P 3 +13750 chr11 HAVANA gene 924894 1012245 9638.0 + 0 ENSG00000183020.13 protein_coding AP2A2 1 OTTHUMG00000165627.7 ncRNA_host +13751 chr11 HAVANA gene 1012821 1036706 8428.0 - 0 ENSG00000184956.15 protein_coding MUC6 2 OTTHUMG00000165140.4 +13752 chr11 HAVANA gene 1049880 1055749 3443.0 + 0 ENSG00000254872.3 lincRNA AC139749.1 2 OTTHUMG00000165161.2 +13753 chr11 HAVANA gene 1074875 1110511 12667.0 + 0 ENSG00000198788.8 protein_coding MUC2 2 OTTHUMG00000156800.4 reference_genome_error +13754 chr11 HAVANA gene 1157953 1201138 17448.0 + 0 ENSG00000215182.8 protein_coding MUC5AC 1 OTTHUMG00000154270.5 +13755 chr11 HAVANA gene 1242261 1249676 434.0 - 0 ENSG00000255177.2 antisense MUC5B-AS1 2 OTTHUMG00000166615.2 +13756 chr11 ENSEMBL gene 1256605 1256670 66.0 + 0 ENSG00000275669.1 miRNA MIR6744 3 +13757 chr11 HAVANA gene 1223066 1262172 18598.0 + 0 ENSG00000117983.17 protein_coding MUC5B 2 OTTHUMG00000166494.4 ncRNA_host +13758 chr11 HAVANA gene 1274371 1309654 5983.0 - 0 ENSG00000078902.15 protein_coding TOLLIP 1 OTTHUMG00000133333.5 +13759 chr11 HAVANA gene 1309769 1310707 939.0 + 0 ENSG00000255153.1 antisense TOLLIP-AS1 1 OTTHUMG00000166230.1 +13760 chr11 HAVANA gene 1350359 1364286 1458.0 + 0 ENSG00000285985.1 lincRNA AC136297.1 2 OTTHUMG00000193180.1 +13761 chr11 HAVANA gene 1389899 1462689 6903.0 + 0 ENSG00000174672.15 protein_coding BRSK2 2 OTTHUMG00000167089.3 +13762 chr11 HAVANA gene 1464582 1467632 2432.0 - 0 ENSG00000285581.1 lincRNA AC091196.1 2 OTTHUMG00000192951.1 +13763 chr11 HAVANA gene 1469457 1501247 4512.0 - 0 ENSG00000182208.13 protein_coding MOB2 1 OTTHUMG00000165545.2 +13764 chr11 HAVANA gene 1554044 1571920 4616.0 - 0 ENSG00000184545.10 protein_coding DUSP8 2 OTTHUMG00000133348.4 +13765 chr11 HAVANA gene 1584342 1585283 942.0 - 0 ENSG00000205869.2 protein_coding KRTAP5-1 2 OTTHUMG00000057557.1 +13766 chr11 HAVANA gene 1597177 1598294 1118.0 - 0 ENSG00000205867.3 protein_coding KRTAP5-2 2 OTTHUMG00000165547.2 +13767 chr11 HAVANA gene 1571353 1599184 2931.0 + 0 ENSG00000233930.3 antisense KRTAP5-AS1 2 OTTHUMG00000165546.3 +13768 chr11 HAVANA gene 1607565 1608463 899.0 - 0 ENSG00000196224.7 protein_coding KRTAP5-3 2 OTTHUMG00000057559.1 +13769 chr11 HAVANA gene 1620958 1622138 1181.0 - 0 ENSG00000241598.5 protein_coding KRTAP5-4 2 OTTHUMG00000057553.1 +13770 chr11 HAVANA gene 1629775 1630707 933.0 + 0 ENSG00000185940.10 protein_coding KRTAP5-5 2 OTTHUMG00000057554.1 +13771 chr11 HAVANA gene 1662584 1663343 588.0 - 0 ENSG00000231487.1 lincRNA AP006285.2 2 OTTHUMG00000057558.1 +13772 chr11 HAVANA gene 1665597 1667856 2158.0 + 0 ENSG00000205866.3 lincRNA FAM99A 2 OTTHUMG00000057555.2 +13773 chr11 HAVANA gene 1683269 1685629 1067.0 - 0 ENSG00000205865.4 antisense FAM99B 2 OTTHUMG00000057552.1 +13774 chr11 HAVANA gene 1688297 1689056 587.0 + 0 ENSG00000227306.1 lincRNA AP006285.1 2 OTTHUMG00000057556.1 +13775 chr11 HAVANA gene 1697195 1697755 561.0 + 0 ENSG00000205864.1 protein_coding KRTAP5-6 2 OTTHUMG00000043932.2 +13776 chr11 HAVANA gene 1732410 1750591 4784.0 - 0 ENSG00000244242.1 protein_coding IFITM10 1 OTTHUMG00000043933.8 overlapping_locus +13777 chr11 HAVANA gene 1760348 1762486 2015.0 + 0 ENSG00000235027.1 antisense AC068580.3 2 OTTHUMG00000045360.2 +13778 chr11 HAVANA gene 1763009 1763749 252.0 - 0 ENSG00000229512.1 sense_intronic AC068580.1 2 OTTHUMG00000045359.1 overlapping_locus +13779 chr11 HAVANA gene 1734821 1763954 4807.0 - 0 ENSG00000250644.3 protein_coding AC068580.4 1 OTTHUMG00000161994.5 overlapping_locus +13780 chr11 HAVANA gene 1752752 1764573 3126.0 - 0 ENSG00000117984.13 protein_coding CTSD 1 OTTHUMG00000044760.23 overlapping_locus +13781 chr11 HAVANA gene 1776930 1778388 338.0 - 0 ENSG00000230834.1 lincRNA AC068580.2 2 OTTHUMG00000045388.1 +13782 chr11 HAVANA gene 1792553 1792870 318.0 + 0 ENSG00000230980.1 processed_pseudogene RPL36AP39 1 OTTHUMG00000045386.2 pseudo_consens +13783 chr11 HAVANA gene 1802889 1804095 1207.0 - 0 ENSG00000230080.2 processed_pseudogene AC139143.1 1 OTTHUMG00000045387.1 pseudo_consens +13784 chr11 HAVANA gene 1828307 1837521 4704.0 + 0 ENSG00000149043.16 protein_coding SYT8 1 OTTHUMG00000009026.15 +13785 chr11 HAVANA gene 1838989 1841680 1082.0 + 0 ENSG00000130598.15 protein_coding TNNI2 2 OTTHUMG00000012253.4 +13786 chr11 ENSEMBL gene 1859464 1859536 73.0 - 0 ENSG00000264493.1 miRNA MIR4298 3 +13787 chr11 HAVANA gene 1864177 1866667 330.0 + 0 ENSG00000249086.1 sense_overlapping AC051649.1 2 OTTHUMG00000066644.1 overlapping_locus +13788 chr11 ENSEMBL gene 1880045 1880147 103.0 + 0 ENSG00000284594.1 miRNA MIR7847 3 +13789 chr11 HAVANA gene 1888577 1891895 3319.0 - 0 ENSG00000283787.1 protein_coding PRR33 2 OTTHUMG00000191981.1 +13790 chr11 HAVANA gene 1852970 1892267 5399.0 + 0 ENSG00000130592.15 protein_coding LSP1 1 OTTHUMG00000012252.24 ncRNA_host,overlapping_locus +13791 chr11 HAVANA gene 1897015 1908656 1299.0 + 0 ENSG00000229671.2 lincRNA LINC01150 2 OTTHUMG00000150032.2 +13792 chr11 HAVANA gene 1919562 1938706 2783.0 + 0 ENSG00000130595.18 protein_coding TNNT3 2 OTTHUMG00000012475.28 +13793 chr11 HAVANA gene 1947278 1984522 2975.0 + 0 ENSG00000214026.10 protein_coding MRPL23 1 OTTHUMG00000012476.7 +13794 chr11 HAVANA gene 1983237 1989920 1876.0 - 0 ENSG00000226416.1 antisense MRPL23-AS1 2 OTTHUMG00000012474.2 +13795 chr11 HAVANA gene 1991096 1993670 923.0 + 0 ENSG00000232987.2 lincRNA LINC01219 2 OTTHUMG00000012473.2 +13796 chr11 ENSEMBL gene 1996540 1996610 71.0 + 0 ENSG00000275266.1 misc_RNA RF01972 3 +13797 chr11 ENSEMBL gene 1996759 1996831 73.0 - 0 ENSG00000284010.1 miRNA MIR675 3 +13798 chr11 ENSEMBL gene 1997484 1997552 69.0 + 0 ENSG00000274866.1 misc_RNA RF01973 3 +13799 chr11 HAVANA gene 1995176 2001470 2897.0 - 0 ENSG00000130600.18 processed_transcript H19 2 OTTHUMG00000012477.6 ncRNA_host +13800 chr11 HAVANA gene 2129121 2129964 373.0 - 0 ENSG00000240801.1 3prime_overlapping_ncRNA AC132217.1 2 OTTHUMG00000009394.2 overlapping_locus +13801 chr11 ENSEMBL gene 2134134 2134209 76.0 - 0 ENSG00000207805.3 miRNA MIR483 3 +13802 chr11 HAVANA gene 2140501 2148666 2869.0 + 0 ENSG00000099869.7 antisense IGF2-AS 2 OTTHUMG00000009557.5 +13803 chr11 HAVANA gene 2129112 2149603 6979.0 - 0 ENSG00000167244.19 protein_coding IGF2 2 OTTHUMG00000009395.12 ncRNA_host,overlapping_locus +13804 chr11 HAVANA gene 2129112 2158658 5851.0 - 0 ENSG00000284779.1 protein_coding IGF2 2 OTTHUMG00000166213.7 ncRNA_host,overlapping_locus +13805 chr11 HAVANA gene 2132538 2161209 2413.0 - 0 ENSG00000129965.15 protein_coding INS-IGF2 2 OTTHUMG00000192523.1 ncRNA_host,overlapping_locus +13806 chr11 HAVANA gene 2159779 2161341 776.0 - 0 ENSG00000254647.6 protein_coding INS 2 OTTHUMG00000009558.9 overlapping_locus +13807 chr11 HAVANA gene 2163929 2171877 3243.0 - 0 ENSG00000180176.14 protein_coding TH 2 OTTHUMG00000009559.6 +13808 chr11 ENSEMBL gene 2173063 2173138 76.0 + 0 ENSG00000265258.1 miRNA MIR4686 3 +13809 chr11 HAVANA gene 2268495 2270952 1852.0 - 0 ENSG00000183734.4 protein_coding ASCL2 2 OTTHUMG00000009648.1 +13810 chr11 HAVANA gene 2295645 2303049 4199.0 - 0 ENSG00000110665.11 protein_coding C11orf21 1 OTTHUMG00000009759.6 +13811 chr11 HAVANA gene 2301997 2318200 3793.0 + 0 ENSG00000064201.15 protein_coding TSPAN32 2 OTTHUMG00000009762.20 +13812 chr11 ENSEMBL gene 2321718 2321827 110.0 + 0 ENSG00000207308.1 snRNA RNU6-878P 3 +13813 chr11 HAVANA gene 2335135 2347685 1178.0 - 0 ENSG00000236264.5 transcribed_processed_pseudogene RPL26P30 2 OTTHUMG00000009761.4 overlapping_locus +13814 chr11 ENSEMBL gene 2372638 2372750 113.0 + 0 ENSG00000199550.1 misc_RNA RF00019 3 +13815 chr11 HAVANA gene 2328749 2377992 1542.0 - 0 ENSG00000238184.1 antisense CD81-AS1 2 OTTHUMG00000009760.2 overlapping_locus +13816 chr11 HAVANA gene 2376177 2397419 7394.0 + 0 ENSG00000110651.11 protein_coding CD81 1 OTTHUMG00000009892.7 +13817 chr11 HAVANA gene 2400488 2403878 2659.0 + 0 ENSG00000184281.14 protein_coding TSSC4 1 OTTHUMG00000009895.7 +13818 chr11 HAVANA gene 2404515 2407908 404.0 + 0 ENSG00000230483.1 antisense AC124057.1 2 OTTHUMG00000009894.1 +13819 chr11 HAVANA gene 2404515 2423045 3962.0 - 0 ENSG00000070985.13 protein_coding TRPM5 2 OTTHUMG00000009896.2 +13820 chr11 ENSEMBL gene 2652099 2652562 464.0 + 0 ENSG00000275666.1 misc_RNA RF01946 3 +13821 chr11 ENSEMBL gene 2674097 2674292 196.0 + 0 ENSG00000276105.1 misc_RNA RF01947 3 +13822 chr11 ENSEMBL gene 2674625 2674740 116.0 + 0 ENSG00000276494.1 misc_RNA RF01948 3 +13823 chr11 ENSEMBL gene 2697851 2698076 226.0 + 0 ENSG00000276015.1 misc_RNA RF01950 3 +13824 chr11 HAVANA gene 2608328 2699994 91667.0 - 0 ENSG00000269821.1 antisense KCNQ1OT1 2 OTTHUMG00000171022.2 +13825 chr11 HAVANA gene 2771356 2771577 222.0 + 0 ENSG00000236041.1 processed_pseudogene COX6CP18 1 OTTHUMG00000009941.1 pseudo_consens,overlapping_locus +13826 chr11 HAVANA gene 2444684 2849110 4447.0 + 0 ENSG00000053918.16 protein_coding KCNQ1 2 OTTHUMG00000009900.9 ncRNA_host,overlapping_locus +13827 chr11 HAVANA gene 2840135 2861568 1084.0 - 0 ENSG00000229414.2 antisense KCNQ1-AS1 2 OTTHUMG00000011704.2 +13828 chr11 ENSEMBL gene 2871437 2871498 62.0 + 0 ENSG00000274740.1 misc_RNA AC013791.1 3 +13829 chr11 HAVANA gene 2870033 2872105 1093.0 + 0 ENSG00000237941.2 antisense KCNQ1DN 2 OTTHUMG00000009942.3 ncRNA_host +13830 chr11 HAVANA gene 2883213 2885773 2478.0 - 0 ENSG00000129757.13 protein_coding CDKN1C 1 OTTHUMG00000010040.5 +13831 chr11 HAVANA gene 2887780 2903740 1782.0 - 0 ENSG00000254827.5 protein_coding SLC22A18AS 2 OTTHUMG00000010038.6 +13832 chr11 HAVANA gene 2899721 2925246 5316.0 + 0 ENSG00000110628.14 protein_coding SLC22A18 2 OTTHUMG00000010037.12 +13833 chr11 HAVANA gene 2928273 2929455 955.0 - 0 ENSG00000181649.6 protein_coding PHLDA2 2 OTTHUMG00000010926.2 +13834 chr11 ENSEMBL gene 2963771 2963893 123.0 - 0 ENSG00000207008.1 snoRNA SNORA54 3 +13835 chr11 HAVANA gene 2989863 2991344 1482.0 + 0 ENSG00000183562.3 antisense AC131971.1 2 OTTHUMG00000187445.1 +13836 chr11 HAVANA gene 2944431 2992377 5200.0 - 0 ENSG00000205531.12 protein_coding NAP1L4 2 OTTHUMG00000011009.11 ncRNA_host +13837 chr11 HAVANA gene 3029009 3041260 2683.0 + 0 ENSG00000247473.2 antisense CARS-AS1 2 OTTHUMG00000165360.1 +13838 chr11 ENSEMBL gene 3048359 3048521 163.0 - 0 ENSG00000201616.1 snRNA RNU1-91P 3 +13839 chr11 HAVANA gene 3000922 3057613 10037.0 - 0 ENSG00000110619.17 protein_coding CARS 2 OTTHUMG00000010927.9 ncRNA_host +13840 chr11 HAVANA gene 3057538 3064707 2507.0 + 0 ENSG00000285644.1 antisense AC108448.3 2 OTTHUMG00000192846.1 +13841 chr11 HAVANA gene 3084393 3085443 730.0 - 0 ENSG00000236710.1 processed_pseudogene AC108448.2 1 OTTHUMG00000011700.1 pseudo_consens +13842 chr11 HAVANA gene 3087116 3166739 7466.0 - 0 ENSG00000021762.19 protein_coding OSBPL5 2 OTTHUMG00000011702.7 +13843 chr11 HAVANA gene 3189546 3189929 293.0 + 0 ENSG00000234791.1 antisense AC108448.1 2 OTTHUMG00000011701.1 +13844 chr11 HAVANA gene 3217944 3218813 870.0 - 0 ENSG00000182170.3 protein_coding MRGPRG 2 OTTHUMG00000011709.2 +13845 chr11 HAVANA gene 3218332 3223131 2012.0 + 0 ENSG00000236301.5 antisense MRGPRG-AS1 2 OTTHUMG00000011707.2 +13846 chr11 HAVANA gene 3227698 3232386 1409.0 - 0 ENSG00000184350.9 protein_coding MRGPRE 2 OTTHUMG00000011708.5 +13847 chr11 HAVANA gene 3226061 3232838 435.0 + 0 ENSG00000224513.2 antisense AC109309.1 1 OTTHUMG00000011710.2 +13848 chr11 HAVANA gene 3276045 3276390 346.0 + 0 ENSG00000236987.2 processed_pseudogene NDUFA5P8 1 OTTHUMG00000011711.2 pseudo_consens +13849 chr11 HAVANA gene 3289311 3289642 332.0 - 0 ENSG00000276951.1 processed_pseudogene AC109309.2 2 OTTHUMG00000187727.1 +13850 chr11 HAVANA gene 3321862 3322202 341.0 + 0 ENSG00000232390.3 processed_pseudogene NDUFA5P1 1 OTTHUMG00000011713.3 pseudo_consens +13851 chr11 HAVANA gene 3335125 3335407 283.0 - 0 ENSG00000273813.1 processed_pseudogene AC123788.2 2 OTTHUMG00000187728.1 +13852 chr11 HAVANA gene 3336721 3340630 783.0 + 0 ENSG00000254592.1 antisense AC123788.1 2 OTTHUMG00000166848.1 +13853 chr11 HAVANA gene 3339261 3379222 5709.0 - 0 ENSG00000005801.17 protein_coding ZNF195 1 OTTHUMG00000011694.9 +13854 chr11 HAVANA gene 3390780 3391752 973.0 - 0 ENSG00000189398.5 unprocessed_pseudogene OR7E12P 2 OTTHUMG00000011703.1 +13855 chr11 HAVANA gene 3380961 3408978 3666.0 + 0 ENSG00000223756.6 transcribed_unprocessed_pseudogene TSSC2 2 OTTHUMG00000011705.3 +13856 chr11 HAVANA gene 3410352 3422496 971.0 - 0 ENSG00000166492.9 unprocessed_pseudogene FAM86GP 2 OTTHUMG00000036109.2 +13857 chr11 HAVANA gene 3429758 3500621 1110.0 - 0 ENSG00000284605.1 transcribed_unprocessed_pseudogene AC127526.3 2 OTTHUMG00000192240.1 overlapping_locus +13858 chr11 HAVANA gene 3469319 3531328 450.0 + 0 ENSG00000254757.1 lincRNA AC127526.1 2 OTTHUMG00000166985.1 +13859 chr11 HAVANA gene 3531420 3531608 189.0 + 0 ENSG00000255522.1 processed_pseudogene SNRPCP5 2 OTTHUMG00000166988.1 +13860 chr11 HAVANA gene 3549745 3550519 775.0 - 0 ENSG00000237226.1 processed_pseudogene RPS3AP39 1 OTTHUMG00000011698.1 pseudo_consens,overlapping_locus +13861 chr11 HAVANA gene 3559657 3560022 366.0 + 0 ENSG00000223688.2 processed_pseudogene RPS24P14 1 OTTHUMG00000011699.2 pseudo_consens +13862 chr11 HAVANA gene 3580927 3581135 209.0 - 0 ENSG00000284639.1 transcribed_unprocessed_pseudogene AP006294.2 2 OTTHUMG00000192241.1 overlapping_locus +13863 chr11 HAVANA gene 3481520 3581211 1377.0 - 0 ENSG00000255367.3 processed_transcript AC127526.2 1 OTTHUMG00000166987.2 overlapping_locus +13864 chr11 HAVANA gene 3591277 3591615 339.0 - 0 ENSG00000230851.1 processed_pseudogene AP006294.1 1 OTTHUMG00000011843.1 pseudo_consens +13865 chr11 HAVANA gene 3599595 3600706 1112.0 - 0 ENSG00000238161.1 unprocessed_pseudogene OR7E117P 1 OTTHUMG00000011847.1 pseudo_consens +13866 chr11 HAVANA gene 3609901 3637559 3262.0 + 0 ENSG00000182048.11 transcribed_unprocessed_pseudogene TRPC2 2 OTTHUMG00000011712.2 +13867 chr11 HAVANA gene 3638503 3642316 1691.0 - 0 ENSG00000167311.13 protein_coding ART5 1 OTTHUMG00000011842.5 +13868 chr11 ENSEMBL gene 3663815 3663911 97.0 - 0 ENSG00000201279.1 misc_RNA RF00019 3 +13869 chr11 HAVANA gene 3645128 3664416 1467.0 + 0 ENSG00000129744.2 protein_coding ART1 2 OTTHUMG00000011845.2 +13870 chr11 ENSEMBL gene 3665164 3665259 96.0 - 0 ENSG00000200201.1 misc_RNA RF00019 3 +13871 chr11 HAVANA gene 3665587 3671384 2703.0 - 0 ENSG00000129749.3 protein_coding CHRNA10 1 OTTHUMG00000011844.2 overlapping_locus +13872 chr11 ENSEMBL gene 3714772 3714875 104.0 - 0 ENSG00000251934.1 snRNA RNU6-1143P 3 +13873 chr11 ENSEMBL gene 3781395 3781456 62.0 + 0 ENSG00000238304.1 snRNA RNU7-50P 3 +13874 chr11 HAVANA gene 3671083 3797792 9905.0 - 0 ENSG00000110713.16 protein_coding NUP98 1 OTTHUMG00000011846.8 ncRNA_host,overlapping_locus +13875 chr11 HAVANA gene 3797724 3826371 3781.0 + 0 ENSG00000148985.19 protein_coding PGAP2 1 OTTHUMG00000012238.14 +13876 chr11 HAVANA gene 3826978 3840983 1782.0 - 0 ENSG00000177105.9 protein_coding RHOG 2 OTTHUMG00000012287.3 retrogene +13877 chr11 HAVANA gene 3854612 3855399 527.0 + 0 ENSG00000229368.1 sense_overlapping AC090587.2 2 OTTHUMG00000012284.1 overlapping_locus +13878 chr11 HAVANA gene 3854318 3855509 494.0 - 0 ENSG00000228661.1 antisense AC090587.1 1 OTTHUMG00000012285.1 +13879 chr11 ENSEMBL gene 3856062 3856141 80.0 + 0 ENSG00000284525.1 miRNA MIR4687 3 +13880 chr11 HAVANA gene 3892398 3892887 490.0 - 0 ENSG00000230593.3 processed_pseudogene PPIAP40 1 OTTHUMG00000012286.1 pseudo_consens +13881 chr11 ENSEMBL gene 3922567 3922703 137.0 + 0 ENSG00000206976.1 snoRNA RF00409 3 +13882 chr11 HAVANA gene 3961277 3961538 262.0 + 0 ENSG00000255232.1 processed_pseudogene AC087441.2 1 OTTHUMG00000165493.1 pseudo_consens,overlapping_locus +13883 chr11 HAVANA gene 3972881 3974237 848.0 - 0 ENSG00000255141.1 processed_pseudogene HNRNPA1P76 1 OTTHUMG00000165494.2 pseudo_consens +13884 chr11 HAVANA gene 3989163 3989463 301.0 - 0 ENSG00000224555.3 processed_pseudogene AC087441.1 1 OTTHUMG00000165495.1 pseudo_consens +13885 chr11 HAVANA gene 4018948 4019118 171.0 + 0 ENSG00000240385.1 processed_pseudogene RPS29P20 1 OTTHUMG00000158282.1 pseudo_consens,overlapping_locus +13886 chr11 HAVANA gene 3854527 4093210 7130.0 + 0 ENSG00000167323.11 protein_coding STIM1 1 OTTHUMG00000133360.4 ncRNA_host,overlapping_locus +13887 chr11 HAVANA gene 4137116 4138257 346.0 - 0 ENSG00000255276.1 antisense RRM1-AS1 2 OTTHUMG00000165304.1 +13888 chr11 HAVANA gene 4094707 4138876 4177.0 + 0 ENSG00000167325.14 protein_coding RRM1 2 OTTHUMG00000133361.4 +13889 chr11 HAVANA gene 4146112 4151104 2602.0 - 0 ENSG00000231548.2 transcribed_unitary_pseudogene OR55B1P 2 OTTHUMG00000154224.2 +13890 chr11 HAVANA gene 4187140 4202655 462.0 + 0 ENSG00000254480.1 lincRNA AC015689.1 2 OTTHUMG00000165305.1 +13891 chr11 HAVANA gene 4210354 4212091 1738.0 - 0 ENSG00000255387.1 processed_pseudogene AC015689.2 1 OTTHUMG00000165306.1 pseudo_consens +13892 chr11 HAVANA gene 4233288 4233872 585.0 + 0 ENSG00000284018.1 protein_coding SSU72P5 2 OTTHUMG00000165695.2 retrogene +13893 chr11 HAVANA gene 4242056 4242640 585.0 - 0 ENSG00000284306.1 protein_coding SSU72P2 2 OTTHUMG00000165696.2 retrogene +13894 chr11 HAVANA gene 4278705 4279192 488.0 + 0 ENSG00000236175.3 processed_pseudogene SSU72P6 1 OTTHUMG00000165697.1 pseudo_consens +13895 chr11 HAVANA gene 4287499 4288083 585.0 - 0 ENSG00000283873.1 protein_coding SSU72P4 2 OTTHUMG00000165698.3 retrogene +13896 chr11 HAVANA gene 4329865 4330449 585.0 + 0 ENSG00000284546.1 protein_coding SSU72P3 2 OTTHUMG00000165699.2 retrogene +13897 chr11 HAVANA gene 4338660 4339244 585.0 - 0 ENSG00000284438.1 protein_coding SSU72P7 2 OTTHUMG00000165700.2 retrogene +13898 chr11 HAVANA gene 4367263 4368386 1124.0 - 0 ENSG00000221996.6 protein_coding OR52B4 2 OTTHUMG00000154222.3 +13899 chr11 HAVANA gene 4378282 4379209 928.0 + 0 ENSG00000175800.5 unitary_pseudogene OR52B3P 2 OTTHUMG00000154223.1 +13900 chr11 HAVANA gene 4384897 4393696 1929.0 - 0 ENSG00000132109.9 protein_coding TRIM21 1 OTTHUMG00000165701.1 +13901 chr11 HAVANA gene 4418060 4419011 952.0 + 0 ENSG00000237272.2 unitary_pseudogene OR51R1P 2 OTTHUMG00000154338.2 +13902 chr11 HAVANA gene 4431323 4432277 955.0 - 0 ENSG00000171999.7 unitary_pseudogene OR52P2P 2 OTTHUMG00000165702.1 +13903 chr11 HAVANA gene 4449295 4450361 1067.0 + 0 ENSG00000181963.5 protein_coding OR52K2 2 OTTHUMG00000165703.1 +13904 chr11 HAVANA gene 4393783 4476361 2160.0 + 0 ENSG00000225101.6 transcribed_unprocessed_pseudogene OR52K3P 2 OTTHUMG00000165704.3 +13905 chr11 HAVANA gene 4482646 4493497 5456.0 + 0 ENSG00000196778.3 protein_coding OR52K1 2 OTTHUMG00000165705.3 +13906 chr11 HAVANA gene 4514966 4515924 959.0 - 0 ENSG00000226616.1 unprocessed_pseudogene OR52M2P 2 OTTHUMG00000154339.1 +13907 chr11 HAVANA gene 4545191 4546144 954.0 + 0 ENSG00000197790.1 protein_coding OR52M1 2 OTTHUMG00000165706.2 +13908 chr11 HAVANA gene 4571423 4577820 654.0 - 0 ENSG00000171987.1 protein_coding C11orf40 2 OTTHUMG00000165345.3 +13909 chr11 HAVANA gene 4581743 4593340 6672.0 + 0 ENSG00000226288.2 protein_coding OR52I2 2 OTTHUMG00000165721.2 +13910 chr11 HAVANA gene 4593614 4596574 2961.0 + 0 ENSG00000232268.6 protein_coding OR52I1 2 OTTHUMG00000165722.5 +13911 chr11 HAVANA gene 4598672 4608259 4282.0 - 0 ENSG00000167333.12 protein_coding TRIM68 1 OTTHUMG00000165723.3 +13912 chr11 HAVANA gene 4637477 4643060 3623.0 + 0 ENSG00000197428.3 protein_coding OR51D1 2 OTTHUMG00000165724.2 +13913 chr11 HAVANA gene 4643420 4655488 3614.0 + 0 ENSG00000180785.9 protein_coding OR51E1 1 OTTHUMG00000157024.3 +13914 chr11 HAVANA gene 4660853 4661763 911.0 - 0 ENSG00000180723.6 unitary_pseudogene OR51A9P 2 OTTHUMG00000154340.2 +13915 chr11 HAVANA gene 4690423 4697831 1444.0 - 0 ENSG00000197674.7 protein_coding OR51C1P 2 OTTHUMG00000186285.3 overlapping_locus +13916 chr11 HAVANA gene 4680171 4697854 2872.0 - 0 ENSG00000167332.8 protein_coding OR51E2 2 OTTHUMG00000133362.6 overlapping_locus +13917 chr11 HAVANA gene 4709569 4712421 2853.0 + 0 ENSG00000272634.2 transcribed_unprocessed_pseudogene OR51F5P 2 OTTHUMG00000186286.2 +13918 chr11 HAVANA gene 4718612 4719559 948.0 + 0 ENSG00000272664.1 unprocessed_pseudogene OR51C4P 2 OTTHUMG00000186287.1 +13919 chr11 HAVANA gene 4722740 4724171 1432.0 - 0 ENSG00000271602.1 processed_pseudogene KRT8P49 1 OTTHUMG00000184842.1 pseudo_consens +13920 chr11 HAVANA gene 4736178 4737078 901.0 - 0 ENSG00000272559.1 unprocessed_pseudogene OR51F3P 2 OTTHUMG00000186288.2 +13921 chr11 HAVANA gene 4752046 4752944 899.0 - 0 ENSG00000273051.1 unprocessed_pseudogene OR51F4P 2 OTTHUMG00000186289.1 +13922 chr11 ENSEMBL gene 4756645 4756797 153.0 + 0 ENSG00000201980.1 snoRNA RF00091 3 +13923 chr11 HAVANA gene 4768979 4769938 960.0 - 0 ENSG00000280021.1 protein_coding OR51F1 2 OTTHUMG00000066503.3 +13924 chr11 HAVANA gene 4786754 4787705 952.0 + 0 ENSG00000176951.6 unprocessed_pseudogene OR51N1P 2 OTTHUMG00000066509.1 +13925 chr11 HAVANA gene 4793778 4795284 828.0 - 0 ENSG00000231070.1 unprocessed_pseudogene OR52Y1P 2 OTTHUMG00000066504.1 +13926 chr11 HAVANA gene 4803433 4804380 948.0 - 0 ENSG00000279270.2 protein_coding OR52R1 2 OTTHUMG00000066510.2 +13927 chr11 HAVANA gene 4821321 4822456 1136.0 + 0 ENSG00000176925.7 protein_coding OR51F2 2 OTTHUMG00000066508.3 +13928 chr11 HAVANA gene 4830175 4833072 1038.0 + 0 ENSG00000197984.4 transcribed_unprocessed_pseudogene OR51A8P 2 OTTHUMG00000066511.2 +13929 chr11 HAVANA gene 4847489 4849238 1750.0 - 0 ENSG00000176922.4 protein_coding OR51S1 2 OTTHUMG00000066506.3 +13930 chr11 HAVANA gene 4859610 4863652 1045.0 - 0 ENSG00000176904.3 transcribed_unprocessed_pseudogene OR51H1 2 OTTHUMG00000066512.4 +13931 chr11 HAVANA gene 4871717 4878117 3046.0 + 0 ENSG00000198217.4 transcribed_unprocessed_pseudogene OR51H2P 2 OTTHUMG00000066500.2 +13932 chr11 HAVANA gene 4881819 4882883 1065.0 + 0 ENSG00000176900.2 protein_coding OR51T1 2 OTTHUMG00000066507.2 +13933 chr11 HAVANA gene 4889593 4890596 1004.0 - 0 ENSG00000197023.6 unprocessed_pseudogene OR51A6P 2 OTTHUMG00000066505.1 +13934 chr11 HAVANA gene 4903783 4909462 2192.0 + 0 ENSG00000176895.9 protein_coding OR51A7 2 OTTHUMG00000066502.3 +13935 chr11 HAVANA gene 4912588 4919350 3326.0 - 0 ENSG00000176893.5 protein_coding OR51G2 2 OTTHUMG00000066501.3 +13936 chr11 HAVANA gene 4923374 4924339 966.0 - 0 ENSG00000278870.2 protein_coding OR51G1 2 OTTHUMG00000066532.2 +13937 chr11 HAVANA gene 4937371 4938294 924.0 - 0 ENSG00000227023.1 unprocessed_pseudogene OR51A3P 2 OTTHUMG00000066613.1 +13938 chr11 HAVANA gene 4942831 4947605 4393.0 - 0 ENSG00000205497.4 protein_coding OR51A4 2 OTTHUMG00000066614.3 +13939 chr11 HAVANA gene 4954772 4955713 942.0 - 0 ENSG00000205496.1 protein_coding OR51A2 2 OTTHUMG00000066602.2 +13940 chr11 HAVANA gene 4972943 4973884 942.0 - 0 ENSG00000225003.1 unprocessed_pseudogene OR51A5P 2 OTTHUMG00000066599.1 +13941 chr11 HAVANA gene 4704927 4992429 1308.0 + 0 ENSG00000167346.7 protein_coding MMP26 2 OTTHUMG00000066442.4 ncRNA_host +13942 chr11 HAVANA gene 4994851 5005536 7300.0 + 0 ENSG00000176798.2 protein_coding OR51L1 2 OTTHUMG00000066605.3 +13943 chr11 HAVANA gene 5015138 5016079 942.0 + 0 ENSG00000224300.1 unprocessed_pseudogene OR51P1P 2 OTTHUMG00000066615.1 +13944 chr11 HAVANA gene 5037013 5037951 939.0 + 0 ENSG00000230261.1 unprocessed_pseudogene OR52J2P 2 OTTHUMG00000066606.1 +13945 chr11 HAVANA gene 5046526 5047461 936.0 + 0 ENSG00000205495.1 protein_coding OR52J3 2 OTTHUMG00000066600.3 +13946 chr11 HAVANA gene 5058650 5059627 978.0 - 0 ENSG00000176787.2 protein_coding OR52E2 2 OTTHUMG00000066608.2 +13947 chr11 HAVANA gene 5069572 5070497 926.0 + 0 ENSG00000273085.1 polymorphic_pseudogene OR52E1 2 OTTHUMG00000066611.3 +13948 chr11 HAVANA gene 5076130 5077066 937.0 - 0 ENSG00000237354.1 unprocessed_pseudogene OR52S1P 2 OTTHUMG00000066607.1 +13949 chr11 HAVANA gene 5092676 5093611 936.0 + 0 ENSG00000226157.1 unprocessed_pseudogene OR52E3P 2 OTTHUMG00000066609.1 +13950 chr11 HAVANA gene 5104153 5105084 932.0 + 0 ENSG00000203560.3 unprocessed_pseudogene OR52J1P 2 OTTHUMG00000066601.1 +13951 chr11 HAVANA gene 5106062 5107530 869.0 - 0 ENSG00000236897.1 lincRNA AC113331.1 1 OTTHUMG00000066612.1 +13952 chr11 HAVANA gene 5120621 5124513 1548.0 - 0 ENSG00000205494.9 transcribed_unprocessed_pseudogene OR52A4P 2 OTTHUMG00000066610.4 +13953 chr11 HAVANA gene 5128776 5138356 4039.0 - 0 ENSG00000171944.2 protein_coding OR52A5 2 OTTHUMG00000066616.3 +13954 chr11 HAVANA gene 5143219 5154757 9783.0 - 0 ENSG00000182070.5 protein_coding OR52A1 2 OTTHUMG00000066603.3 +13955 chr11 HAVANA gene 5170351 5171296 946.0 - 0 ENSG00000176752.6 unprocessed_pseudogene OR51A1P 2 OTTHUMG00000066604.1 +13956 chr11 HAVANA gene 5177714 5178664 951.0 - 0 ENSG00000176748.6 unprocessed_pseudogene OR52Z1 2 OTTHUMG00000066624.5 +13957 chr11 HAVANA gene 5199735 5200700 966.0 - 0 ENSG00000176742.2 protein_coding OR51V1 2 OTTHUMG00000066671.3 +13958 chr11 HAVANA gene 5205041 5207308 522.0 + 0 ENSG00000224091.1 antisense AC104389.1 2 OTTHUMG00000066679.1 +13959 chr11 ENSEMBL gene 5224448 5224639 192.0 - 0 ENSG00000221031.1 ribozyme RF00621 3 +13960 chr11 HAVANA gene 5224309 5225461 1153.0 - 0 ENSG00000285498.1 TEC AC104389.6 2 OTTHUMG00000192516.1 ncRNA_host +13961 chr11 HAVANA gene 5225464 5229395 1179.0 - 0 ENSG00000244734.4 protein_coding HBB 2 OTTHUMG00000066678.8 +13962 chr11 HAVANA gene 5241105 5243537 1454.0 - 0 ENSG00000229988.2 transcribed_unprocessed_pseudogene HBBP1 2 OTTHUMG00000066684.4 overlapping_locus +13963 chr11 HAVANA gene 5232678 5243657 1270.0 - 0 ENSG00000223609.9 protein_coding HBD 1 OTTHUMG00000066674.5 overlapping_locus +13964 chr11 HAVANA gene 5244554 5245546 993.0 - 0 ENSG00000260629.2 lincRNA BGLT3 2 OTTHUMG00000173138.2 +13965 chr11 HAVANA gene 5248079 5249859 1659.0 - 0 ENSG00000213934.8 protein_coding HBG1 2 OTTHUMG00000066681.6 overlapping_locus +13966 chr11 HAVANA gene 5248270 5254783 651.0 - 0 ENSG00000284931.1 protein_coding AC104389.5 2 OTTHUMG00000192488.2 +13967 chr11 HAVANA gene 5291761 5292380 620.0 - 0 ENSG00000229093.1 unprocessed_pseudogene OR51AB1P 2 OTTHUMG00000066677.1 +13968 chr11 HAVANA gene 5301014 5301946 933.0 - 0 ENSG00000183251.4 protein_coding OR51B4 2 OTTHUMG00000066665.5 +13969 chr11 HAVANA gene 5314772 5315684 913.0 - 0 ENSG00000223735.1 unprocessed_pseudogene OR51B3P 2 OTTHUMG00000066683.1 +13970 chr11 HAVANA gene 5323359 5324297 939.0 - 0 ENSG00000279012.2 protein_coding OR51B2 2 OTTHUMG00000066682.2 +13971 chr11 HAVANA gene 5330592 5331360 769.0 - 0 ENSG00000236359.1 unprocessed_pseudogene OR51B8P 2 OTTHUMG00000066668.1 +13972 chr11 HAVANA gene 5351508 5352446 939.0 + 0 ENSG00000176239.7 protein_coding OR51B6 2 OTTHUMG00000066669.2 +13973 chr11 HAVANA gene 5354692 5355578 887.0 + 0 ENSG00000230087.1 processed_pseudogene AC104389.2 1 OTTHUMG00000066667.1 pseudo_consens +13974 chr11 HAVANA gene 5362615 5362849 235.0 + 0 ENSG00000236248.1 processed_pseudogene AC104389.3 1 OTTHUMG00000066672.1 pseudo_consens +13975 chr11 HAVANA gene 5383812 5393263 4099.0 + 0 ENSG00000184698.5 protein_coding OR51M1 2 OTTHUMG00000066680.3 +13976 chr11 HAVANA gene 5402597 5403547 951.0 + 0 ENSG00000184321.1 unprocessed_pseudogene OR51J1 2 OTTHUMG00000066666.2 +13977 chr11 HAVANA gene 5422111 5423206 1096.0 + 0 ENSG00000167360.6 protein_coding OR51Q1 2 OTTHUMG00000066896.2 +13978 chr11 HAVANA gene 5430653 5431602 950.0 - 0 ENSG00000248424.1 unprocessed_pseudogene OR51K1P 2 OTTHUMG00000066890.1 +13979 chr11 HAVANA gene 5440570 5441514 945.0 - 0 ENSG00000167359.8 protein_coding OR51I1 2 OTTHUMG00000066908.2 +13980 chr11 HAVANA gene 5449323 5456518 3302.0 + 0 ENSG00000187918.5 protein_coding OR51I2 2 OTTHUMG00000066902.3 +13981 chr11 HAVANA gene 5468486 5469422 937.0 - 0 ENSG00000230484.2 unitary_pseudogene OR51A10P 2 OTTHUMG00000066900.1 +13982 chr11 HAVANA gene 5488685 5489749 1065.0 + 0 ENSG00000181609.5 protein_coding OR52D1 2 OTTHUMG00000066895.2 +13983 chr11 HAVANA gene 5253190 5505605 869.0 - 0 ENSG00000196565.14 protein_coding HBG2 2 OTTHUMG00000066673.11 overlapping_locus +13984 chr11 HAVANA gene 5303444 5505652 3965.0 - 0 ENSG00000167355.8 protein_coding OR51B5 2 OTTHUMG00000066676.3 overlapping_locus +13985 chr11 HAVANA gene 5268345 5505652 961.0 - 0 ENSG00000213931.6 protein_coding HBE1 2 OTTHUMG00000066675.9 overlapping_locus +13986 chr11 HAVANA gene 5507300 5509985 2440.0 - 0 ENSG00000175520.8 protein_coding UBQLN3 2 OTTHUMG00000066886.3 overlapping_locus,retrogene +13987 chr11 HAVANA gene 5514393 5516705 2313.0 - 0 ENSG00000175518.6 protein_coding UBQLNL 2 OTTHUMG00000066903.2 overlapping_locus,retrogene +13988 chr11 HAVANA gene 5518441 5524955 1478.0 - 0 ENSG00000224295.3 unitary_pseudogene OLFM5P 2 OTTHUMG00000066889.3 overlapping_locus +13989 chr11 HAVANA gene 5527277 5528174 898.0 - 0 ENSG00000249633.1 unprocessed_pseudogene OR52V1P 2 OTTHUMG00000066905.1 +13990 chr11 HAVANA gene 5544489 5548533 1143.0 - 0 ENSG00000181616.9 protein_coding OR52H1 2 OTTHUMG00000066909.3 +13991 chr11 HAVANA gene 5551662 5552563 902.0 - 0 ENSG00000248553.1 unitary_pseudogene OR52H2P 2 OTTHUMG00000066894.1 +13992 chr11 HAVANA gene 5557096 5564327 3520.0 + 0 ENSG00000231049.2 transcribed_unprocessed_pseudogene OR52B5P 2 OTTHUMG00000066901.2 +13993 chr11 HAVANA gene 5566678 5567616 939.0 - 0 ENSG00000233646.1 unprocessed_pseudogene OR52T1P 2 OTTHUMG00000066910.1 +13994 chr11 HAVANA gene 5571247 5572192 946.0 - 0 ENSG00000229534.1 processed_pseudogene HNRNPA1P53 1 OTTHUMG00000066898.1 pseudo_consens,overlapping_locus +13995 chr11 HAVANA gene 5580877 5581884 1008.0 + 0 ENSG00000187747.2 protein_coding OR52B6 2 OTTHUMG00000066906.2 +13996 chr11 HAVANA gene 5596109 5612958 3947.0 + 0 ENSG00000121236.20 protein_coding TRIM6 1 OTTHUMG00000150029.7 overlapping_locus +13997 chr11 HAVANA gene 5619764 5644398 2690.0 + 0 ENSG00000258659.6 protein_coding TRIM34 2 OTTHUMG00000066892.3 overlapping_locus +13998 chr11 HAVANA gene 5596725 5644398 3391.0 + 0 ENSG00000258588.3 protein_coding TRIM6-TRIM34 2 OTTHUMG00000066899.4 overlapping_locus +13999 chr11 HAVANA gene 5254392 5678434 5265.0 - 0 ENSG00000239920.2 protein_coding AC104389.4 2 OTTHUMG00000192501.3 overlapping_locus +14000 chr11 HAVANA gene 5719290 5720212 923.0 + 0 ENSG00000232381.1 unprocessed_pseudogene OR52U1P 2 OTTHUMG00000066907.1 +14001 chr11 HAVANA gene 5726502 5727464 963.0 + 0 ENSG00000181109.3 unprocessed_pseudogene OR52P1P 2 OTTHUMG00000066888.1 +14002 chr11 HAVANA gene 5689689 5737089 6020.0 + 0 ENSG00000132274.15 protein_coding TRIM22 1 OTTHUMG00000066904.5 overlapping_locus +14003 chr11 HAVANA gene 5736448 5738522 2075.0 + 0 ENSG00000181023.7 protein_coding OR56B1 2 OTTHUMG00000066891.4 overlapping_locus +14004 chr11 HAVANA gene 5754243 5755905 1276.0 + 0 ENSG00000181074.4 protein_coding OR52N4 2 OTTHUMG00000066887.47 +14005 chr11 HAVANA gene 5761153 5767465 2457.0 + 0 ENSG00000181017.5 transcribed_unprocessed_pseudogene OR56B2P 2 OTTHUMG00000168798.2 +14006 chr11 HAVANA gene 5776165 5783355 2788.0 - 0 ENSG00000181009.5 protein_coding OR52N5 2 OTTHUMG00000168799.2 +14007 chr11 HAVANA gene 5786471 5791265 2545.0 - 0 ENSG00000181001.2 protein_coding OR52N1 2 OTTHUMG00000168800.3 +14008 chr11 HAVANA gene 5800364 5801297 934.0 + 0 ENSG00000236965.4 unprocessed_pseudogene OR52N3P 2 OTTHUMG00000154349.1 +14009 chr11 HAVANA gene 5820314 5821348 1035.0 + 0 ENSG00000180988.2 protein_coding OR52N2 2 OTTHUMG00000168801.1 +14010 chr11 HAVANA gene 5840928 5841952 982.0 - 0 ENSG00000205409.3 protein_coding OR52E6 2 OTTHUMG00000168802.1 +14011 chr11 HAVANA gene 5856674 5857734 1061.0 - 0 ENSG00000183269.5 protein_coding OR52E8 2 OTTHUMG00000168803.1 +14012 chr11 HAVANA gene 5873960 5874892 933.0 + 0 ENSG00000233563.1 unprocessed_pseudogene OR52E7P 2 OTTHUMG00000154351.1 +14013 chr11 HAVANA gene 5880629 5887079 2947.0 + 0 ENSG00000180974.4 protein_coding OR52E4 2 OTTHUMG00000168804.2 +14014 chr11 HAVANA gene 5893208 5902730 2244.0 + 0 ENSG00000277932.2 protein_coding OR52E5 2 OTTHUMG00000187075.2 +14015 chr11 HAVANA gene 5903767 5904448 682.0 + 0 ENSG00000277514.1 unprocessed_pseudogene OR52Q1P 2 OTTHUMG00000187076.1 +14016 chr11 HAVANA gene 5663557 5938619 4804.0 - 0 ENSG00000132256.18 protein_coding TRIM5 2 OTTHUMG00000066893.8 overlapping_locus +14017 chr11 HAVANA gene 5938751 5951347 4832.0 + 0 ENSG00000184478.7 protein_coding OR56A3 2 OTTHUMG00000165373.2 +14018 chr11 HAVANA gene 5967177 5968494 946.0 - 0 ENSG00000188691.5 protein_coding OR56A5 2 OTTHUMG00000165730.3 +14019 chr11 HAVANA gene 5985892 5986985 1094.0 - 0 ENSG00000183313.4 protein_coding OR52L1 2 OTTHUMG00000165374.2 +14020 chr11 HAVANA gene 5993876 5994995 1120.0 - 0 ENSG00000254831.1 processed_pseudogene KRT18P58 1 OTTHUMG00000165375.1 pseudo_consens +14021 chr11 HAVANA gene 5999445 6006946 3934.0 - 0 ENSG00000183389.5 protein_coding OR56A4 2 OTTHUMG00000165376.4 +14022 chr11 ENSEMBL gene 6016996 6017114 119.0 + 0 ENSG00000202147.1 rRNA_pseudogene RNA5SP329 3 +14023 chr11 HAVANA gene 6019336 6034338 8518.0 - 0 ENSG00000180934.6 protein_coding OR56A1 2 OTTHUMG00000165377.3 +14024 chr11 HAVANA gene 6045807 6046747 941.0 - 0 ENSG00000255481.2 unprocessed_pseudogene OR56A7P 2 OTTHUMG00000165731.2 +14025 chr11 HAVANA gene 6057316 6058275 960.0 - 0 ENSG00000262980.1 unprocessed_pseudogene OR52L2P 2 OTTHUMG00000177791.1 +14026 chr11 HAVANA gene 6066873 6067786 914.0 - 0 ENSG00000234895.1 unitary_pseudogene OR52X1P 2 OTTHUMG00000154352.1 +14027 chr11 HAVANA gene 6107684 6108835 1152.0 + 0 ENSG00000180919.3 protein_coding OR56B4 2 OTTHUMG00000165531.1 +14028 chr11 HAVANA gene 6128610 6129556 947.0 + 0 ENSG00000180913.3 unprocessed_pseudogene OR56B3P 2 OTTHUMG00000187058.1 +14029 chr11 HAVANA gene 6151641 6152549 909.0 - 0 ENSG00000180909.2 unprocessed_pseudogene OR52B1P 2 OTTHUMG00000187081.1 +14030 chr11 HAVANA gene 6169330 6170408 1079.0 - 0 ENSG00000255307.1 protein_coding OR52B2 2 OTTHUMG00000165732.1 +14031 chr11 HAVANA gene 6108135 6185576 816.0 - 0 ENSG00000254444.1 sense_overlapping AC022762.1 1 OTTHUMG00000165532.1 overlapping_locus +14032 chr11 HAVANA gene 6199146 6200259 1114.0 + 0 ENSG00000175485.2 protein_coding OR52W1 2 OTTHUMG00000165378.1 +14033 chr11 HAVANA gene 6201901 6203253 1353.0 - 0 ENSG00000267940.1 lincRNA AC022762.2 2 OTTHUMG00000183056.1 +14034 chr11 HAVANA gene 6205566 6211132 1142.0 + 0 ENSG00000180878.2 protein_coding C11orf42 2 OTTHUMG00000133377.2 +14035 chr11 HAVANA gene 6211335 6234711 4736.0 - 0 ENSG00000051009.10 protein_coding FAM160A2 2 OTTHUMG00000133379.2 +14036 chr11 HAVANA gene 6234765 6244429 2167.0 + 0 ENSG00000132259.12 protein_coding CNGA4 1 OTTHUMG00000165379.2 +14037 chr11 HAVANA gene 6259736 6272127 2655.0 + 0 ENSG00000110148.9 protein_coding CCKBR 1 OTTHUMG00000133380.3 +14038 chr11 HAVANA gene 6297189 6298606 1418.0 - 0 ENSG00000270435.1 processed_pseudogene AC068733.2 1 OTTHUMG00000184841.1 pseudo_consens +14039 chr11 HAVANA gene 6318946 6320647 1672.0 - 0 ENSG00000170955.9 protein_coding CAVIN3 1 OTTHUMG00000133378.3 +14040 chr11 HAVANA gene 6319141 6346309 3188.0 + 0 ENSG00000282556.2 processed_transcript AC068733.3 2 OTTHUMG00000191408.3 +14041 chr11 HAVANA gene 6362799 6365267 2469.0 + 0 ENSG00000254443.1 lincRNA AC068733.1 1 OTTHUMG00000165915.1 +14042 chr11 HAVANA gene 6390431 6394998 2750.0 + 0 ENSG00000166311.9 protein_coding SMPD1 1 OTTHUMG00000165453.6 +14043 chr11 HAVANA gene 6395124 6419414 5244.0 - 0 ENSG00000166313.18 protein_coding APBB1 1 OTTHUMG00000165454.6 +14044 chr11 HAVANA gene 6431049 6442617 3631.0 - 0 ENSG00000110169.10 protein_coding HPX 1 OTTHUMG00000133399.3 +14045 chr11 HAVANA gene 6448613 6474459 6751.0 - 0 ENSG00000110171.19 protein_coding TRIM3 1 OTTHUMG00000133405.4 +14046 chr11 HAVANA gene 6474683 6481479 5312.0 - 0 ENSG00000132254.12 protein_coding ARFIP2 2 OTTHUMG00000133406.6 +14047 chr11 HAVANA gene 6481447 6484679 3041.0 + 0 ENSG00000132286.11 protein_coding TIMM10B 2 OTTHUMG00000179826.1 overlapping_locus +14048 chr11 HAVANA gene 6488186 6489377 686.0 - 0 ENSG00000254595.1 processed_pseudogene AC084337.1 1 OTTHUMG00000165733.1 pseudo_consens +14049 chr11 HAVANA gene 6481485 6508978 884.0 + 0 ENSG00000283977.1 protein_coding AC084337.2 2 OTTHUMG00000133400.3 overlapping_locus +14050 chr11 HAVANA gene 6497260 6593758 19629.0 + 0 ENSG00000179532.12 protein_coding DNHD1 1 OTTHUMG00000133403.6 overlapping_locus +14051 chr11 HAVANA gene 6595075 6603620 6922.0 - 0 ENSG00000132275.10 protein_coding RRP8 1 OTTHUMG00000165503.1 +14052 chr11 HAVANA gene 6603642 6604420 399.0 - 0 ENSG00000254400.1 antisense AC091564.2 2 OTTHUMG00000166620.1 +14053 chr11 HAVANA gene 6608667 6610135 429.0 - 0 ENSG00000254641.1 sense_overlapping AC091564.3 1 OTTHUMG00000165504.1 overlapping_locus +14054 chr11 HAVANA gene 6603708 6610874 3484.0 + 0 ENSG00000166333.13 protein_coding ILK 1 OTTHUMG00000133407.5 +14055 chr11 HAVANA gene 6606296 6612667 6103.0 - 0 ENSG00000166337.9 protein_coding TAF10 2 OTTHUMG00000133402.4 overlapping_locus +14056 chr11 HAVANA gene 6610883 6616594 1349.0 - 0 ENSG00000285338.1 processed_transcript AC091564.7 2 OTTHUMG00000192502.1 overlapping_locus +14057 chr11 HAVANA gene 6612763 6619485 6544.0 - 0 ENSG00000166340.16 protein_coding TPP1 2 OTTHUMG00000133404.10 overlapping_locus +14058 chr11 HAVANA gene 6618790 6619764 464.0 + 0 ENSG00000255680.1 antisense AC091564.6 1 OTTHUMG00000168089.1 +14059 chr11 HAVANA gene 6621451 6622322 820.0 + 0 ENSG00000255390.1 antisense AC091564.4 2 OTTHUMG00000165533.1 +14060 chr11 HAVANA gene 6630603 6635208 487.0 + 0 ENSG00000255410.1 antisense AC091564.5 1 OTTHUMG00000165534.1 +14061 chr11 HAVANA gene 6621323 6655854 10765.0 - 0 ENSG00000166341.7 protein_coding DCHS1 2 OTTHUMG00000133398.3 +14062 chr11 HAVANA gene 6680782 6683401 2276.0 - 0 ENSG00000158042.8 protein_coding MRPL17 1 OTTHUMG00000165505.2 +14063 chr11 HAVANA gene 6685891 6686369 479.0 - 0 ENSG00000241678.1 processed_pseudogene AC091564.1 1 OTTHUMG00000158289.2 pseudo_consens +14064 chr11 HAVANA gene 6713536 6746439 8438.0 - 0 ENSG00000254838.5 transcribed_unprocessed_pseudogene GVINP1 1 OTTHUMG00000165506.5 +14065 chr11 HAVANA gene 6748131 6750324 2194.0 + 0 ENSG00000254781.1 processed_pseudogene GVINP2 2 OTTHUMG00000165734.1 +14066 chr11 HAVANA gene 6765626 6771976 4224.0 - 0 ENSG00000188124.3 protein_coding OR2AG2 2 OTTHUMG00000165868.2 +14067 chr11 HAVANA gene 6783020 6791558 6994.0 + 0 ENSG00000279486.5 protein_coding OR2AG1 2 OTTHUMG00000165735.2 +14068 chr11 HAVANA gene 6791736 6799689 4308.0 - 0 ENSG00000184933.5 protein_coding OR6A2 2 OTTHUMG00000165736.2 +14069 chr11 HAVANA gene 6843664 6844666 1003.0 - 0 ENSG00000254712.1 processed_pseudogene AC087280.1 1 OTTHUMG00000165737.1 pseudo_consens +14070 chr11 HAVANA gene 6845652 6846705 1054.0 + 0 ENSG00000166363.5 protein_coding OR10A5 2 OTTHUMG00000165738.1 +14071 chr11 HAVANA gene 6863057 6874717 5390.0 + 0 ENSG00000170790.5 protein_coding OR10A2 2 OTTHUMG00000165739.2 +14072 chr11 HAVANA gene 6876625 6877619 995.0 + 0 ENSG00000170782.3 protein_coding OR10A4 2 OTTHUMG00000165740.1 +14073 chr11 HAVANA gene 6891490 6892599 1110.0 - 0 ENSG00000166368.2 protein_coding OR2D2 2 OTTHUMG00000165741.1 +14074 chr11 HAVANA gene 6920974 6922043 1070.0 + 0 ENSG00000178358.4 protein_coding OR2D3 2 OTTHUMG00000165742.1 +14075 chr11 HAVANA gene 6821942 6926877 4822.0 - 0 ENSG00000283415.1 lincRNA AC087280.2 2 OTTHUMG00000191628.1 +14076 chr11 HAVANA gene 6926404 7001004 5769.0 + 0 ENSG00000149054.15 protein_coding ZNF215 2 OTTHUMG00000165507.4 +14077 chr11 HAVANA gene 6999318 7020368 2949.0 - 0 ENSG00000149050.9 protein_coding ZNF214 2 OTTHUMG00000165618.1 +14078 chr11 HAVANA gene 7020446 7071308 3628.0 + 0 ENSG00000158077.4 protein_coding NLRP14 2 OTTHUMG00000165508.2 +14079 chr11 HAVANA gene 7089027 7090900 1874.0 + 0 ENSG00000170748.6 protein_coding RBMXL2 2 OTTHUMG00000165509.1 retrogene +14080 chr11 HAVANA gene 7222933 7230863 529.0 + 0 ENSG00000255179.1 lincRNA AC027804.1 1 OTTHUMG00000165498.1 +14081 chr11 ENSEMBL gene 7234766 7234837 72.0 + 0 ENSG00000221703.1 miRNA MIR302E 3 +14082 chr11 HAVANA gene 7238778 7469042 4727.0 + 0 ENSG00000170743.16 protein_coding SYT9 2 OTTHUMG00000165499.2 +14083 chr11 HAVANA gene 7485388 7511377 3436.0 + 0 ENSG00000183801.7 protein_coding OLFML1 1 OTTHUMG00000165527.2 +14084 chr11 HAVANA gene 7427266 7512515 7284.0 - 0 ENSG00000251364.6 antisense AC107884.1 2 OTTHUMG00000165526.2 +14085 chr11 HAVANA gene 7568866 7572046 550.0 - 0 ENSG00000254864.1 antisense AC107884.2 2 OTTHUMG00000165664.1 +14086 chr11 HAVANA gene 7513298 7657127 9617.0 + 0 ENSG00000166387.12 protein_coding PPFIBP2 1 OTTHUMG00000165617.9 +14087 chr11 HAVANA gene 7665100 7677222 8596.0 - 0 ENSG00000166394.14 protein_coding CYB5R2 1 OTTHUMG00000165665.2 +14088 chr11 HAVANA gene 7698951 7699393 443.0 - 0 ENSG00000275612.1 sense_intronic AC104237.2 2 OTTHUMG00000188330.1 +14089 chr11 HAVANA gene 7699562 7699988 427.0 - 0 ENSG00000276668.1 sense_intronic AC104237.3 2 OTTHUMG00000188331.1 +14090 chr11 HAVANA gene 7689438 7706421 2088.0 - 0 ENSG00000183378.11 protein_coding OVCH2 2 OTTHUMG00000165418.11 overlapping_locus +14091 chr11 HAVANA gene 7705288 7709517 539.0 + 0 ENSG00000254707.1 antisense AC104237.1 2 OTTHUMG00000165667.1 +14092 chr11 HAVANA gene 7726436 7729684 1686.0 + 0 ENSG00000176716.5 transcribed_unprocessed_pseudogene OR10AB1P 2 OTTHUMG00000185959.2 +14093 chr11 HAVANA gene 7745990 7746906 917.0 + 0 ENSG00000227892.1 unprocessed_pseudogene OR5P4P 2 OTTHUMG00000154328.1 +14094 chr11 HAVANA gene 7772890 7773814 925.0 - 0 ENSG00000166408.4 unprocessed_pseudogene OR5P1P 2 OTTHUMG00000154322.1 +14095 chr11 HAVANA gene 7783697 7784407 711.0 + 0 ENSG00000241008.1 processed_pseudogene AC044810.1 1 OTTHUMG00000158302.1 pseudo_consens +14096 chr11 HAVANA gene 7795905 7796973 1069.0 - 0 ENSG00000183303.2 protein_coding OR5P2 2 OTTHUMG00000165668.1 +14097 chr11 HAVANA gene 7824818 7830840 1193.0 - 0 ENSG00000182334.2 protein_coding OR5P3 2 OTTHUMG00000165669.3 +14098 chr11 HAVANA gene 7848700 7849626 927.0 + 0 ENSG00000170688.4 unprocessed_pseudogene OR5E1P 2 OTTHUMG00000154333.1 +14099 chr11 HAVANA gene 7704628 7882947 589.0 - 0 ENSG00000271758.2 lincRNA AC044810.3 2 OTTHUMG00000165666.2 overlapping_locus +14100 chr11 ENSEMBL gene 7889182 7889279 98.0 - 0 ENSG00000252769.1 snRNA RNU6-943P 3 +14101 chr11 HAVANA gene 7754393 7905955 2822.0 - 0 ENSG00000254951.7 sense_overlapping AC044810.2 2 OTTHUMG00000185711.1 ncRNA_host,overlapping_locus +14102 chr11 HAVANA gene 7924592 7931268 6104.0 - 0 ENSG00000279000.3 protein_coding OR10A6 2 OTTHUMG00000165671.2 +14103 chr11 HAVANA gene 7937171 7941708 2650.0 - 0 ENSG00000170683.6 protein_coding OR10A3 2 OTTHUMG00000165672.2 +14104 chr11 HAVANA gene 7959424 7965426 2531.0 - 0 ENSG00000182261.3 protein_coding NLRP10 2 OTTHUMG00000165673.3 +14105 chr11 HAVANA gene 7977481 7977708 228.0 + 0 ENSG00000254642.1 processed_pseudogene COX6CP5 1 OTTHUMG00000165674.1 pseudo_consens,overlapping_locus +14106 chr11 HAVANA gene 7970251 8001862 9431.0 + 0 ENSG00000175390.13 protein_coding EIF3F 2 OTTHUMG00000165675.2 overlapping_locus +14107 chr11 HAVANA gene 8011278 8016489 1563.0 - 0 ENSG00000255420.1 antisense CASC23 2 OTTHUMG00000165689.1 +14108 chr11 HAVANA gene 8035446 8039718 1229.0 - 0 ENSG00000254921.1 antisense AC116456.1 2 OTTHUMG00000165691.1 +14109 chr11 HAVANA gene 8060038 8069373 2021.0 + 0 ENSG00000248332.6 sense_intronic TUB-AS1 2 OTTHUMG00000165692.1 overlapping_locus +14110 chr11 HAVANA gene 8075573 8077781 2209.0 - 0 ENSG00000279391.1 TEC AC116456.2 2 OTTHUMG00000165693.1 +14111 chr11 HAVANA gene 8019244 8106112 6722.0 + 0 ENSG00000166402.8 protein_coding TUB 2 OTTHUMG00000165690.1 overlapping_locus +14112 chr11 HAVANA gene 8106093 8169055 7657.0 - 0 ENSG00000166405.14 protein_coding RIC3 1 OTTHUMG00000165694.5 +14113 chr11 HAVANA gene 8169167 8178903 3734.0 + 0 ENSG00000246820.2 lincRNA AC091013.1 2 OTTHUMG00000165832.1 +14114 chr11 HAVANA gene 8224304 8268716 1690.0 - 0 ENSG00000166407.13 protein_coding LMO1 2 OTTHUMG00000165833.2 +14115 chr11 ENSEMBL gene 8555016 8555146 131.0 + 0 ENSG00000252778.1 scaRNA RF00601 3 +14116 chr11 HAVANA gene 8391868 8594289 7599.0 - 0 ENSG00000130413.15 protein_coding STK33 2 OTTHUMG00000140275.9 +14117 chr11 HAVANA gene 8679089 8680913 537.0 + 0 ENSG00000254900.1 antisense AC091053.2 1 OTTHUMG00000165841.1 +14118 chr11 HAVANA gene 8612037 8682694 11752.0 - 0 ENSG00000166436.16 protein_coding TRIM66 1 OTTHUMG00000150481.6 +14119 chr11 ENSEMBL gene 8684227 8684356 130.0 + 0 ENSG00000200983.1 snoRNA SNORA3A 3 +14120 chr11 ENSEMBL gene 8685439 8685569 131.0 + 0 ENSG00000212607.1 snoRNA SNORA3B 3 +14121 chr11 HAVANA gene 8693357 8696607 744.0 + 0 ENSG00000254665.1 antisense AC091053.1 2 OTTHUMG00000165842.1 overlapping_locus +14122 chr11 HAVANA gene 8682411 8714759 7193.0 + 0 ENSG00000166441.12 protein_coding RPL27A 1 OTTHUMG00000165834.2 ncRNA_host,overlapping_locus +14123 chr11 HAVANA gene 8768778 8810231 1255.0 + 0 ENSG00000255159.1 antisense AC026894.1 1 OTTHUMG00000165652.1 +14124 chr11 ENSEMBL gene 8845263 8845358 96.0 + 0 ENSG00000252905.1 rRNA_pseudogene RNA5SP330 3 +14125 chr11 ENSEMBL gene 8877417 8877518 102.0 - 0 ENSG00000202276.1 misc_RNA RF00019 3 +14126 chr11 HAVANA gene 8693351 8910951 14262.0 - 0 ENSG00000166444.18 protein_coding ST5 1 OTTHUMG00000165835.3 ncRNA_host +14127 chr11 HAVANA gene 8911139 8920084 2300.0 + 0 ENSG00000166452.11 protein_coding AKIP1 2 OTTHUMG00000165653.2 +14128 chr11 HAVANA gene 8920076 8933006 2607.0 - 0 ENSG00000176029.13 protein_coding C11orf16 1 OTTHUMG00000165654.2 +14129 chr11 HAVANA gene 8937579 8938211 633.0 - 0 ENSG00000176009.3 protein_coding ASCL3 2 OTTHUMG00000165679.1 +14130 chr11 ENSEMBL gene 8943380 8943467 88.0 - 0 ENSG00000223080.1 misc_RNA RF00019 3 +14131 chr11 HAVANA gene 8947294 8965011 3064.0 - 0 ENSG00000175348.10 protein_coding TMEM9B 1 OTTHUMG00000165676.2 +14132 chr11 HAVANA gene 8964675 8977527 1162.0 + 0 ENSG00000254860.5 antisense TMEM9B-AS1 2 OTTHUMG00000165677.1 +14133 chr11 HAVANA gene 8980576 9004049 4123.0 - 0 ENSG00000175352.10 protein_coding NRIP3 1 OTTHUMG00000165680.2 +14134 chr11 HAVANA gene 9004162 9065154 1486.0 + 0 ENSG00000253973.2 antisense AC079296.1 1 OTTHUMG00000163879.2 +14135 chr11 ENSEMBL gene 9090312 9090379 68.0 - 0 ENSG00000264984.1 miRNA MIR5691 3 +14136 chr11 HAVANA gene 9094377 9095890 1514.0 + 0 ENSG00000213538.5 processed_pseudogene KRT8P41 1 OTTHUMG00000165715.1 pseudo_consens +14137 chr11 HAVANA gene 9019498 9138114 7992.0 - 0 ENSG00000175356.13 protein_coding SCUBE2 1 OTTHUMG00000163880.7 ncRNA_host +14138 chr11 HAVANA gene 9242448 9245509 561.0 - 0 ENSG00000255097.1 sense_intronic AP006259.1 2 OTTHUMG00000165718.1 overlapping_locus +14139 chr11 HAVANA gene 9138825 9265390 8648.0 - 0 ENSG00000184014.7 protein_coding DENND5A 1 OTTHUMG00000165716.4 overlapping_locus +14140 chr11 ENSEMBL gene 9279532 9279816 285.0 - 0 ENSG00000273725.1 misc_RNA RF00017 3 +14141 chr11 HAVANA gene 9311284 9311689 406.0 - 0 ENSG00000254884.1 processed_pseudogene PRR13P2 1 OTTHUMG00000165752.1 pseudo_consens,overlapping_locus +14142 chr11 HAVANA gene 9280654 9314780 4422.0 - 0 ENSG00000166471.10 protein_coding TMEM41B 2 OTTHUMG00000165719.2 overlapping_locus +14143 chr11 ENSEMBL gene 9428773 9428954 182.0 + 0 ENSG00000201998.1 snoRNA SNORA23 3 +14144 chr11 HAVANA gene 9430356 9433486 597.0 - 0 ENSG00000254397.1 antisense AC132192.1 2 OTTHUMG00000165754.1 +14145 chr11 HAVANA gene 9384622 9448126 7245.0 + 0 ENSG00000205339.9 protein_coding IPO7 2 OTTHUMG00000165753.2 ncRNA_host +14146 chr11 HAVANA gene 9459556 9460702 1147.0 - 0 ENSG00000268403.2 antisense AC132192.2 2 OTTHUMG00000187446.1 +14147 chr11 HAVANA gene 9460319 9528524 4233.0 + 0 ENSG00000166478.9 protein_coding ZNF143 1 OTTHUMG00000149922.4 +14148 chr11 ENSEMBL gene 9578028 9578131 104.0 + 0 ENSG00000238387.1 snoRNA RF01210 3 +14149 chr11 HAVANA gene 9573681 9593457 9239.0 + 0 ENSG00000166483.10 protein_coding WEE1 1 OTTHUMG00000165863.3 ncRNA_host +14150 chr11 HAVANA gene 9606142 9606609 468.0 + 0 ENSG00000243964.1 processed_pseudogene RPL23AP65 1 OTTHUMG00000158304.2 pseudo_consens +14151 chr11 HAVANA gene 9631008 9631359 352.0 - 0 ENSG00000255463.1 processed_pseudogene AC011979.2 2 OTTHUMG00000165864.1 +14152 chr11 HAVANA gene 9660438 9660920 483.0 + 0 ENSG00000239470.3 processed_pseudogene AC011979.1 2 OTTHUMG00000158305.1 +14153 chr11 ENSEMBL gene 9680924 9681238 315.0 + 0 ENSG00000201564.1 misc_RNA RN7SKP50 3 +14154 chr11 HAVANA gene 9664077 9752991 7190.0 + 0 ENSG00000133789.14 protein_coding SWAP70 1 OTTHUMG00000165865.3 ncRNA_host +14155 chr11 HAVANA gene 9754770 9759533 2632.0 - 0 ENSG00000245522.2 lincRNA AC026250.1 2 OTTHUMG00000165874.3 +14156 chr11 HAVANA gene 9758292 9811335 4644.0 + 0 ENSG00000246273.7 antisense SBF2-AS1 1 OTTHUMG00000165875.2 +14157 chr11 ENSEMBL gene 9843815 9843876 62.0 - 0 ENSG00000252568.1 snRNA RNU7-28P 3 +14158 chr11 HAVANA gene 9839143 9929263 586.0 + 0 ENSG00000255476.1 antisense AC011092.2 2 OTTHUMG00000165891.1 +14159 chr11 HAVANA gene 9958744 9959790 1047.0 - 0 ENSG00000254765.1 processed_pseudogene AC011092.1 1 OTTHUMG00000165892.1 pseudo_consens,overlapping_locus +14160 chr11 HAVANA gene 10149192 10165109 522.0 + 0 ENSG00000254865.1 antisense AC100763.1 1 OTTHUMG00000165893.1 +14161 chr11 HAVANA gene 10272052 10272259 208.0 - 0 ENSG00000254719.1 processed_pseudogene AC080023.2 2 OTTHUMG00000166010.1 overlapping_locus +14162 chr11 HAVANA gene 9778667 10294207 16767.0 - 0 ENSG00000133812.15 protein_coding SBF2 1 OTTHUMG00000165890.3 ncRNA_host,overlapping_locus +14163 chr11 HAVANA gene 10302657 10303704 803.0 - 0 ENSG00000254554.1 antisense AC080023.1 1 OTTHUMG00000165894.1 +14164 chr11 HAVANA gene 10304680 10307397 2718.0 + 0 ENSG00000148926.9 protein_coding ADM 2 OTTHUMG00000165907.1 +14165 chr11 ENSEMBL gene 10399192 10399317 126.0 - 0 ENSG00000221574.1 snRNA RNU6ATAC33P 3 +14166 chr11 HAVANA gene 10308313 10507579 6793.0 + 0 ENSG00000133805.15 protein_coding AMPD3 1 OTTHUMG00000165682.5 +14167 chr11 ENSEMBL gene 10508270 10508326 57.0 - 0 ENSG00000283813.1 miRNA MIR4485 3 +14168 chr11 HAVANA gene 10507887 10509189 1303.0 - 0 ENSG00000255823.4 protein_coding MTRNR2L8 2 OTTHUMG00000184980.1 ncRNA_host +14169 chr11 HAVANA gene 10511678 10541230 7820.0 - 0 ENSG00000110315.6 protein_coding RNF141 2 OTTHUMG00000165712.1 +14170 chr11 HAVANA gene 10541272 10599932 1403.0 + 0 ENSG00000177112.7 antisense MRVI1-AS1 2 OTTHUMG00000165772.2 +14171 chr11 HAVANA gene 10556966 10611689 3515.0 - 0 ENSG00000133800.8 protein_coding LYVE1 1 OTTHUMG00000165713.1 overlapping_locus +14172 chr11 HAVANA gene 10573091 10693988 7700.0 - 0 ENSG00000072952.18 protein_coding MRVI1 2 OTTHUMG00000165773.7 overlapping_locus +14173 chr11 ENSEMBL gene 10725903 10726004 102.0 + 0 ENSG00000206858.1 misc_RNA RF00019 3 +14174 chr11 ENSEMBL gene 10801467 10801608 142.0 - 0 ENSG00000238622.1 snoRNA SNORD97 3 +14175 chr11 HAVANA gene 10750987 10801625 6026.0 + 0 ENSG00000198730.8 protein_coding CTR9 1 OTTHUMG00000165789.3 +14176 chr11 HAVANA gene 10797050 10809110 8655.0 - 0 ENSG00000110321.16 protein_coding EIF4G2 1 OTTHUMG00000165823.7 ncRNA_host +14177 chr11 HAVANA gene 10809297 10822931 2335.0 + 0 ENSG00000246308.1 antisense AC116535.1 2 OTTHUMG00000165807.1 +14178 chr11 HAVANA gene 10812074 10858796 9029.0 - 0 ENSG00000236287.7 protein_coding ZBED5 1 OTTHUMG00000150341.5 +14179 chr11 HAVANA gene 10884885 10899322 947.0 - 0 ENSG00000250041.2 lincRNA AC069360.1 2 OTTHUMG00000165889.1 +14180 chr11 HAVANA gene 10858259 10906802 1995.0 + 0 ENSG00000247271.6 antisense ZBED5-AS1 1 OTTHUMG00000165888.1 +14181 chr11 HAVANA gene 11135482 11137658 1387.0 + 0 ENSG00000254957.1 processed_pseudogene AC111188.2 1 OTTHUMG00000165896.1 pseudo_consens,overlapping_locus +14182 chr11 HAVANA gene 11182107 11182413 307.0 - 0 ENSG00000270897.1 processed_pseudogene AC111188.3 1 OTTHUMG00000184837.1 pseudo_consens +14183 chr11 HAVANA gene 11020883 11183611 2009.0 + 0 ENSG00000254401.2 lincRNA AC111188.1 2 OTTHUMG00000165895.3 overlapping_locus +14184 chr11 HAVANA gene 11239759 11240280 522.0 + 0 ENSG00000255123.1 processed_pseudogene MTND5P21 2 OTTHUMG00000165725.1 +14185 chr11 HAVANA gene 11243188 11243715 426.0 - 0 ENSG00000255260.1 lincRNA KC877392.1 2 OTTHUMG00000165726.1 +14186 chr11 HAVANA gene 11352426 11353307 594.0 + 0 ENSG00000255351.1 antisense AC023946.1 1 OTTHUMG00000165683.1 +14187 chr11 HAVANA gene 11351942 11353357 1416.0 - 0 ENSG00000254598.2 protein_coding CSNK2A3 2 OTTHUMG00000165708.3 overlapping_locus,retrogene +14188 chr11 HAVANA gene 11570084 11573782 372.0 + 0 ENSG00000255462.1 antisense AC104031.1 1 OTTHUMG00000165678.1 +14189 chr11 HAVANA gene 11270876 11622005 3627.0 - 0 ENSG00000110328.5 protein_coding GALNT18 2 OTTHUMG00000165707.1 overlapping_locus +14190 chr11 ENSEMBL gene 11656651 11656722 72.0 - 0 ENSG00000266645.1 miRNA MIR4299 3 +14191 chr11 HAVANA gene 11725332 11726702 1371.0 - 0 ENSG00000280288.1 TEC AC131935.2 2 OTTHUMG00000187478.1 +14192 chr11 HAVANA gene 11759101 11759433 333.0 - 0 ENSG00000255309.1 processed_pseudogene AC131935.1 1 OTTHUMG00000165684.1 pseudo_consens +14193 chr11 ENSEMBL gene 11783135 11783222 88.0 - 0 ENSG00000278529.1 miRNA MIR8070 3 +14194 chr11 HAVANA gene 11856490 11856859 370.0 - 0 ENSG00000255492.1 processed_pseudogene AC104383.1 1 OTTHUMG00000165686.1 pseudo_consens +14195 chr11 HAVANA gene 11841423 11959323 11158.0 + 0 ENSG00000170242.17 protein_coding USP47 2 OTTHUMG00000165685.5 +14196 chr11 HAVANA gene 11963106 12009769 5059.0 - 0 ENSG00000050165.17 protein_coding DKK3 1 OTTHUMG00000165709.3 +14197 chr11 HAVANA gene 12030875 12061785 3308.0 + 0 ENSG00000254486.1 lincRNA LINC02547 2 OTTHUMG00000165710.1 +14198 chr11 HAVANA gene 12066929 12073014 899.0 + 0 ENSG00000254991.1 lincRNA AC124276.1 2 OTTHUMG00000165711.1 +14199 chr11 HAVANA gene 12086891 12089441 550.0 + 0 ENSG00000255400.1 lincRNA AC124276.2 1 OTTHUMG00000165727.1 +14200 chr11 ENSEMBL gene 12163683 12163767 85.0 + 0 ENSG00000275373.1 miRNA MIR6124 3 +14201 chr11 HAVANA gene 12261426 12263173 500.0 - 0 ENSG00000254680.1 antisense AC079329.1 2 OTTHUMG00000165779.1 +14202 chr11 HAVANA gene 12303533 12308216 384.0 + 0 ENSG00000254983.1 sense_intronic AC025300.1 2 OTTHUMG00000165818.1 overlapping_locus +14203 chr11 HAVANA gene 12094008 12359144 20191.0 + 0 ENSG00000133816.15 protein_coding MICAL2 1 OTTHUMG00000165744.8 ncRNA_host +14204 chr11 HAVANA gene 12377185 12535356 12849.0 + 0 ENSG00000197702.12 protein_coding PARVA 2 OTTHUMG00000165778.4 +14205 chr11 HAVANA gene 12538083 12540967 519.0 - 0 ENSG00000254847.1 lincRNA AC009806.1 2 OTTHUMG00000165780.1 +14206 chr11 HAVANA gene 12822435 12823667 489.0 - 0 ENSG00000254688.1 antisense AC013549.2 1 OTTHUMG00000165901.1 +14207 chr11 HAVANA gene 12848795 12849433 419.0 + 0 ENSG00000255067.1 sense_intronic AC013549.3 2 OTTHUMG00000165902.1 overlapping_locus +14208 chr11 ENSEMBL gene 12904817 12904988 172.0 - 0 ENSG00000252329.1 scaRNA RF00424 3 +14209 chr11 HAVANA gene 12921186 12922925 566.0 - 0 ENSG00000203258.3 antisense AC013549.1 2 OTTHUMG00000165903.1 +14210 chr11 HAVANA gene 12674591 12944483 10279.0 + 0 ENSG00000187079.16 protein_coding TEAD1 2 OTTHUMG00000165878.6 overlapping_locus +14211 chr11 HAVANA gene 12961842 12989548 2870.0 - 0 ENSG00000251381.7 lincRNA LINC00958 1 OTTHUMG00000165904.3 +14212 chr11 HAVANA gene 13001090 13009159 670.0 - 0 ENSG00000254670.1 lincRNA AC084859.1 2 OTTHUMG00000165905.1 +14213 chr11 HAVANA gene 13009577 13012106 2530.0 + 0 ENSG00000189431.7 protein_coding RASSF10 2 OTTHUMG00000166184.2 +14214 chr11 HAVANA gene 13054615 13134839 467.0 - 0 ENSG00000255558.1 lincRNA AC013762.1 2 OTTHUMG00000165950.1 +14215 chr11 HAVANA gene 13152200 13152348 149.0 + 0 ENSG00000255018.1 processed_pseudogene AC022878.1 2 OTTHUMG00000165782.1 +14216 chr11 ENSEMBL gene 13353208 13353523 316.0 + 0 ENSG00000222162.1 misc_RNA RN7SKP151 3 +14217 chr11 HAVANA gene 13276652 13387266 6726.0 + 0 ENSG00000133794.17 protein_coding ARNTL 2 OTTHUMG00000150623.8 ncRNA_host +14218 chr11 HAVANA gene 13388001 13463297 3495.0 - 0 ENSG00000148925.10 protein_coding BTBD10 1 OTTHUMG00000165787.6 +14219 chr11 HAVANA gene 13478333 13479037 705.0 + 0 ENSG00000254583.1 processed_pseudogene AC021269.1 2 OTTHUMG00000165783.2 +14220 chr11 HAVANA gene 13488612 13489390 330.0 + 0 ENSG00000255401.1 unprocessed_pseudogene AC021269.2 2 OTTHUMG00000165784.1 +14221 chr11 HAVANA gene 13492055 13496181 953.0 - 0 ENSG00000152266.6 protein_coding PTH 2 OTTHUMG00000165785.2 +14222 chr11 HAVANA gene 13610363 13610771 409.0 - 0 ENSG00000228901.3 processed_pseudogene HMGN2P36 2 OTTHUMG00000165786.2 +14223 chr11 HAVANA gene 13669327 13670149 368.0 + 0 ENSG00000254791.1 sense_intronic FAR1-IT1 2 OTTHUMG00000165788.1 overlapping_locus +14224 chr11 HAVANA gene 13685499 13685656 158.0 - 0 ENSG00000240454.1 processed_pseudogene RPL39P26 1 OTTHUMG00000158307.1 pseudo_consens +14225 chr11 ENSEMBL gene 13686550 13686658 109.0 - 0 ENSG00000200685.1 misc_RNA RF00019 3 +14226 chr11 HAVANA gene 13668670 13732346 7501.0 + 0 ENSG00000197601.12 protein_coding FAR1 2 OTTHUMG00000165743.6 overlapping_locus +14227 chr11 HAVANA gene 13756027 13757560 1202.0 + 0 ENSG00000255075.1 processed_pseudogene CENPUP1 1 OTTHUMG00000165745.1 pseudo_consens +14228 chr11 HAVANA gene 13758111 13758345 235.0 - 0 ENSG00000255088.1 processed_pseudogene AC013828.1 2 OTTHUMG00000165746.1 +14229 chr11 HAVANA gene 13784029 13848002 1458.0 + 0 ENSG00000255411.2 lincRNA LINC02548 2 OTTHUMG00000165747.2 +14230 chr11 HAVANA gene 13844862 13870616 306.0 - 0 ENSG00000254930.1 lincRNA LINC02545 2 OTTHUMG00000165749.1 overlapping_locus +14231 chr11 HAVANA gene 13826843 13879499 516.0 - 0 ENSG00000254927.1 lincRNA AC027779.1 2 OTTHUMG00000165748.1 overlapping_locus +14232 chr11 ENSEMBL gene 13907484 13907590 107.0 - 0 ENSG00000201856.1 rRNA_pseudogene RNA5SP331 3 +14233 chr11 HAVANA gene 13921450 13924863 684.0 - 0 ENSG00000254438.1 lincRNA AC022240.1 2 OTTHUMG00000165750.1 +14234 chr11 ENSEMBL gene 14134986 14135100 115.0 + 0 ENSG00000212365.1 rRNA_pseudogene RNA5SP332 3 +14235 chr11 HAVANA gene 13962689 14267884 5102.0 + 0 ENSG00000262655.3 protein_coding SPON1 2 OTTHUMG00000181576.3 +14236 chr11 HAVANA gene 14262846 14273691 240.0 - 0 ENSG00000254418.1 antisense SPON1-AS1 2 OTTHUMG00000165755.1 +14237 chr11 HAVANA gene 14277926 14364506 3453.0 - 0 ENSG00000133818.13 protein_coding RRAS2 2 OTTHUMG00000165756.2 +14238 chr11 HAVANA gene 14440787 14441677 512.0 + 0 ENSG00000255074.1 processed_pseudogene AC018523.1 1 OTTHUMG00000165957.1 pseudo_consens +14239 chr11 ENSEMBL gene 14478892 14478953 62.0 + 0 ENSG00000251991.1 snRNA RNU7-49P 3 +14240 chr11 HAVANA gene 14443440 14500027 5131.0 - 0 ENSG00000129083.12 protein_coding COPB1 1 OTTHUMG00000165824.2 overlapping_locus +14241 chr11 HAVANA gene 14493783 14520344 1221.0 - 0 ENSG00000256206.2 protein_coding AC018523.2 2 OTTHUMG00000168126.1 overlapping_locus +14242 chr11 HAVANA gene 14504874 14643635 3301.0 - 0 ENSG00000129084.17 protein_coding PSMA1 1 OTTHUMG00000165825.6 overlapping_locus +14243 chr11 HAVANA gene 14673606 14674555 950.0 - 0 ENSG00000255040.1 processed_pseudogene MORF4L1P3 1 OTTHUMG00000165899.1 pseudo_consens +14244 chr11 HAVANA gene 14643723 14872044 11707.0 + 0 ENSG00000152270.8 protein_coding PDE3B 1 OTTHUMG00000165898.2 +14245 chr11 HAVANA gene 14877440 14892252 4516.0 - 0 ENSG00000186104.10 protein_coding CYP2R1 1 OTTHUMG00000165900.4 +14246 chr11 HAVANA gene 14907518 14907986 212.0 + 0 ENSG00000253179.1 unprocessed_pseudogene CALCP 2 OTTHUMG00000164573.24 overlapping_locus +14247 chr11 HAVANA gene 14966668 14972354 2128.0 - 0 ENSG00000110680.12 protein_coding CALCA 2 OTTHUMG00000159731.3 +14248 chr11 HAVANA gene 14987671 14988694 1024.0 - 0 ENSG00000250640.2 unprocessed_pseudogene OR7E41P 1 OTTHUMG00000164630.1 pseudo_consens +14249 chr11 HAVANA gene 14904997 15082342 3937.0 + 0 ENSG00000175868.13 protein_coding CALCB 1 OTTHUMG00000164629.23 overlapping_locus +14250 chr11 HAVANA gene 15112424 15247208 3435.0 + 0 ENSG00000188487.11 protein_coding INSC 1 OTTHUMG00000165838.3 +14251 chr11 ENSEMBL gene 15481808 15481893 86.0 - 0 ENSG00000253072.1 snoRNA RF00324 3 +14252 chr11 HAVANA gene 15552855 15591098 571.0 + 0 ENSG00000254946.1 lincRNA AC073172.2 2 OTTHUMG00000165839.1 +14253 chr11 HAVANA gene 15571819 15622403 851.0 - 0 ENSG00000254789.2 lincRNA AC073172.1 2 OTTHUMG00000165840.2 +14254 chr11 HAVANA gene 15643885 15705368 471.0 + 0 ENSG00000254695.1 lincRNA AC087379.2 1 OTTHUMG00000165843.1 +14255 chr11 HAVANA gene 15701963 15758898 993.0 - 0 ENSG00000254645.1 lincRNA AC087379.1 2 OTTHUMG00000166009.1 +14256 chr11 HAVANA gene 15910957 15927443 528.0 + 0 ENSG00000254661.2 lincRNA AC009869.1 1 OTTHUMG00000165844.1 +14257 chr11 ENSEMBL gene 15969533 15969621 89.0 - 0 ENSG00000284094.1 miRNA MIR6073 3 +14258 chr11 HAVANA gene 16023190 16031515 197.0 + 0 ENSG00000254878.1 antisense AC103794.1 2 OTTHUMG00000165846.1 +14259 chr11 HAVANA gene 16484084 16484671 588.0 - 0 ENSG00000213785.3 processed_pseudogene AKR1B1P3 1 OTTHUMG00000165909.1 pseudo_consens,overlapping_locus +14260 chr11 ENSEMBL gene 16576851 16577135 285.0 + 0 ENSG00000241943.2 misc_RNA RN7SL188P 3 +14261 chr11 HAVANA gene 15966449 16739591 19636.0 - 0 ENSG00000110693.17 protein_coding SOX6 2 OTTHUMG00000165876.7 ncRNA_host,overlapping_locus +14262 chr11 HAVANA gene 16613132 16756881 8675.0 + 0 ENSG00000110696.9 protein_coding C11orf58 1 OTTHUMG00000165910.5 +14263 chr11 ENSEMBL gene 16842253 16842587 335.0 + 0 ENSG00000199883.1 misc_RNA RN7SKP90 3 +14264 chr11 HAVANA gene 16974693 16975013 321.0 - 0 ENSG00000244398.1 processed_pseudogene AC116533.1 1 OTTHUMG00000158484.1 pseudo_consens,overlapping_locus +14265 chr11 HAVANA gene 16777317 17014443 10987.0 - 0 ENSG00000166689.15 protein_coding PLEKHA7 1 OTTHUMG00000165954.4 overlapping_locus +14266 chr11 HAVANA gene 17013998 17053024 1370.0 + 0 ENSG00000184669.9 transcribed_unprocessed_pseudogene OR7E14P 1 OTTHUMG00000165955.5 pseudo_consens +14267 chr11 ENSEMBL gene 17074654 17074744 91.0 - 0 ENSG00000272034.1 snoRNA SNORD14A 3 +14268 chr11 ENSEMBL gene 17075779 17075868 90.0 - 0 ENSG00000201403.1 snoRNA SNORD14B 3 +14269 chr11 HAVANA gene 17074389 17077787 2186.0 - 0 ENSG00000110700.6 protein_coding RPS13 2 OTTHUMG00000165988.4 ncRNA_host,overlapping_locus +14270 chr11 ENSEMBL gene 17115652 17115763 112.0 - 0 ENSG00000201586.1 snRNA RNU6-593P 3 +14271 chr11 HAVANA gene 17137976 17138265 290.0 - 0 ENSG00000240808.1 processed_pseudogene AC126389.1 1 OTTHUMG00000158308.1 pseudo_consens,overlapping_locus +14272 chr11 HAVANA gene 17193489 17194308 454.0 + 0 ENSG00000213779.4 processed_pseudogene AC107956.2 1 OTTHUMG00000158312.1 pseudo_consens +14273 chr11 HAVANA gene 17077730 17207983 9204.0 - 0 ENSG00000011405.13 protein_coding PIK3C2A 2 OTTHUMG00000166036.3 ncRNA_host,overlapping_locus +14274 chr11 HAVANA gene 17228279 17229151 873.0 + 0 ENSG00000197149.5 processed_pseudogene AC107956.1 1 OTTHUMG00000158315.1 pseudo_consens,overlapping_locus +14275 chr11 HAVANA gene 17208153 17349980 9025.0 + 0 ENSG00000070081.16 protein_coding NUCB2 2 OTTHUMG00000166050.7 overlapping_locus +14276 chr11 HAVANA gene 17349053 17351703 1113.0 - 0 ENSG00000285545.1 antisense AC124798.2 2 OTTHUMG00000192925.1 +14277 chr11 HAVANA gene 17351726 17377341 6438.0 + 0 ENSG00000188211.8 protein_coding NCR3LG1 2 OTTHUMG00000165913.3 +14278 chr11 HAVANA gene 17380649 17383531 2883.0 + 0 ENSG00000260196.1 antisense AC124798.1 2 OTTHUMG00000173015.1 +14279 chr11 HAVANA gene 17385859 17389331 3204.0 - 0 ENSG00000187486.5 protein_coding KCNJ11 2 OTTHUMG00000165914.2 +14280 chr11 HAVANA gene 17435672 17436181 510.0 - 0 ENSG00000255035.2 processed_pseudogene SDHCP4 1 OTTHUMG00000166317.2 pseudo_consens,overlapping_locus +14281 chr11 HAVANA gene 17392498 17476879 12588.0 - 0 ENSG00000006071.13 protein_coding ABCC8 2 OTTHUMG00000166316.33 overlapping_locus +14282 chr11 HAVANA gene 17493895 17544416 4904.0 - 0 ENSG00000006611.15 protein_coding USH1C 2 OTTHUMG00000166323.2 +14283 chr11 HAVANA gene 17547373 17647150 10709.0 + 0 ENSG00000188162.10 protein_coding OTOG 1 OTTHUMG00000149905.5 +14284 chr11 HAVANA gene 17695267 17696940 556.0 - 0 ENSG00000255335.1 antisense AC124301.2 1 OTTHUMG00000166357.1 +14285 chr11 HAVANA gene 17695022 17697471 846.0 + 0 ENSG00000254586.1 lincRNA AC124301.1 2 OTTHUMG00000166356.1 +14286 chr11 HAVANA gene 17719568 17722131 1801.0 + 0 ENSG00000129152.3 protein_coding MYOD1 2 OTTHUMG00000166358.1 +14287 chr11 HAVANA gene 17734774 17856804 14417.0 + 0 ENSG00000129159.7 protein_coding KCNC1 1 OTTHUMG00000166359.2 +14288 chr11 HAVANA gene 17788048 18013162 3502.0 - 0 ENSG00000129158.10 protein_coding SERGEF 1 OTTHUMG00000166420.2 overlapping_locus +14289 chr11 HAVANA gene 18000542 18022931 688.0 - 0 ENSG00000255448.1 processed_transcript AC055860.1 2 OTTHUMG00000166394.2 overlapping_locus +14290 chr11 HAVANA gene 18017564 18042426 5626.0 - 0 ENSG00000129167.9 protein_coding TPH1 2 OTTHUMG00000166421.2 overlapping_locus +14291 chr11 HAVANA gene 18069935 18106091 3070.0 - 0 ENSG00000166788.9 protein_coding SAAL1 1 OTTHUMG00000166428.2 +14292 chr11 HAVANA gene 18106583 18106841 259.0 + 0 ENSG00000255254.1 processed_pseudogene HIGD1AP5 1 OTTHUMG00000166432.1 pseudo_consens +14293 chr11 HAVANA gene 18112472 18116132 653.0 - 0 ENSG00000166787.3 transcribed_unprocessed_pseudogene SAA3P 2 OTTHUMG00000166433.1 +14294 chr11 HAVANA gene 18120955 18138480 1741.0 + 0 ENSG00000179826.6 protein_coding MRGPRX3 2 OTTHUMG00000166435.2 +14295 chr11 HAVANA gene 18142341 18145142 2715.0 + 0 ENSG00000285562.1 lincRNA AC090099.5 2 OTTHUMG00000193317.1 +14296 chr11 HAVANA gene 18153277 18154255 979.0 + 0 ENSG00000254857.1 processed_pseudogene AC090099.3 2 OTTHUMG00000166436.1 +14297 chr11 HAVANA gene 18172837 18174280 1444.0 + 0 ENSG00000179817.5 protein_coding MRGPRX4 2 OTTHUMG00000166442.1 +14298 chr11 HAVANA gene 18140186 18189495 1027.0 - 0 ENSG00000255470.1 lincRNA AC090099.4 2 OTTHUMG00000166434.2 +14299 chr11 HAVANA gene 18189000 18189621 622.0 + 0 ENSG00000255138.1 processed_pseudogene GLTPP1 1 OTTHUMG00000166443.1 pseudo_consens +14300 chr11 HAVANA gene 18196657 18197337 681.0 + 0 ENSG00000254546.1 processed_pseudogene AC090099.2 2 OTTHUMG00000166444.1 +14301 chr11 HAVANA gene 18209138 18214562 3839.0 + 0 ENSG00000189332.5 transcribed_unprocessed_pseudogene AC090099.1 1 OTTHUMG00000166445.3 pseudo_consens +14302 chr11 HAVANA gene 18231349 18236893 727.0 - 0 ENSG00000148965.9 protein_coding SAA4 2 OTTHUMG00000166483.1 overlapping_locus +14303 chr11 ENSEMBL gene 18248389 18248506 118.0 - 0 ENSG00000200336.1 rRNA_pseudogene RNA5SP333 3 +14304 chr11 HAVANA gene 18231423 18248635 743.0 - 0 ENSG00000255071.3 protein_coding SAA2-SAA4 2 OTTHUMG00000166482.2 overlapping_locus +14305 chr11 HAVANA gene 18239223 18248643 2227.0 - 0 ENSG00000134339.8 protein_coding SAA2 1 OTTHUMG00000166484.1 overlapping_locus +14306 chr11 HAVANA gene 18261982 18263091 1110.0 + 0 ENSG00000212789.4 processed_pseudogene ST13P5 2 OTTHUMG00000165956.3 +14307 chr11 ENSEMBL gene 18266393 18266510 118.0 + 0 ENSG00000201695.1 rRNA_pseudogene RNA5SP334 3 +14308 chr11 HAVANA gene 18266174 18269977 765.0 + 0 ENSG00000173432.11 protein_coding SAA1 2 OTTHUMG00000166147.6 +14309 chr11 HAVANA gene 18278668 18322198 6433.0 - 0 ENSG00000110756.17 protein_coding HPS5 1 OTTHUMG00000166612.6 +14310 chr11 HAVANA gene 18322295 18367044 6939.0 + 0 ENSG00000110768.11 protein_coding GTF2H1 1 OTTHUMG00000167690.6 +14311 chr11 ENSEMBL gene 18387787 18387860 74.0 + 0 ENSG00000264603.1 miRNA MIR3159 3 +14312 chr11 HAVANA gene 18405609 18406731 270.0 + 0 ENSG00000256006.1 sense_intronic AC084117.1 2 OTTHUMG00000133752.2 overlapping_locus +14313 chr11 HAVANA gene 18394388 18408425 6210.0 + 0 ENSG00000134333.13 protein_coding LDHA 1 OTTHUMG00000167721.3 overlapping_locus +14314 chr11 HAVANA gene 18450112 18450868 757.0 - 0 ENSG00000256734.1 processed_pseudogene AC027544.3 1 OTTHUMG00000167723.1 pseudo_consens +14315 chr11 HAVANA gene 18412307 18452058 2095.0 + 0 ENSG00000166796.11 protein_coding LDHC 1 OTTHUMG00000167722.2 +14316 chr11 HAVANA gene 18455824 18479600 2586.0 + 0 ENSG00000166800.9 protein_coding LDHAL6A 2 OTTHUMG00000167724.1 +14317 chr11 HAVANA gene 18490243 18490955 713.0 - 0 ENSG00000256464.1 processed_pseudogene YWHABP2 1 OTTHUMG00000167726.1 pseudo_consens,overlapping_locus +14318 chr11 HAVANA gene 18507608 18508820 630.0 - 0 ENSG00000256588.1 sense_intronic AC027544.2 2 OTTHUMG00000167727.1 overlapping_locus +14319 chr11 HAVANA gene 18511043 18511475 433.0 - 0 ENSG00000256361.1 processed_pseudogene AC027544.1 1 OTTHUMG00000167728.1 pseudo_consens,overlapping_locus +14320 chr11 HAVANA gene 18468336 18527232 3839.0 - 0 ENSG00000074319.12 protein_coding TSG101 1 OTTHUMG00000167725.3 overlapping_locus +14321 chr11 ENSEMBL gene 18538885 18539189 305.0 + 0 ENSG00000274589.1 misc_RNA RF00017 3 +14322 chr11 HAVANA gene 18529609 18588747 5515.0 - 0 ENSG00000151116.16 protein_coding UEVLD 1 OTTHUMG00000167729.3 +14323 chr11 HAVANA gene 18595459 18599683 1366.0 - 0 ENSG00000256282.1 transcribed_processed_pseudogene AC112694.1 1 OTTHUMG00000167730.1 pseudo_consens +14324 chr11 HAVANA gene 18601882 18602649 768.0 + 0 ENSG00000279837.1 TEC AC112694.2 2 OTTHUMG00000167732.1 overlapping_locus +14325 chr11 HAVANA gene 18588781 18610255 2283.0 + 0 ENSG00000247595.4 protein_coding SPTY2D1OS 2 OTTHUMG00000167731.4 overlapping_locus +14326 chr11 HAVANA gene 18606401 18634791 6005.0 - 0 ENSG00000179119.14 protein_coding SPTY2D1 2 OTTHUMG00000167733.1 +14327 chr11 HAVANA gene 18665050 18665548 499.0 + 0 ENSG00000257043.1 processed_pseudogene AP006296.1 1 OTTHUMG00000167734.1 pseudo_consens +14328 chr11 HAVANA gene 18693122 18704785 4243.0 + 0 ENSG00000151117.8 protein_coding TMEM86A 1 OTTHUMG00000167680.1 +14329 chr11 HAVANA gene 18704305 18726230 4841.0 - 0 ENSG00000179057.13 protein_coding IGSF22 2 OTTHUMG00000160502.3 +14330 chr11 HAVANA gene 18706537 18740568 874.0 + 0 ENSG00000254966.1 antisense AC103974.1 2 OTTHUMG00000166097.1 +14331 chr11 HAVANA gene 18727928 18792721 5497.0 - 0 ENSG00000110786.17 protein_coding PTPN5 2 OTTHUMG00000134304.3 +14332 chr11 HAVANA gene 18836304 18837081 778.0 + 0 ENSG00000276789.1 processed_pseudogene AC103974.2 2 OTTHUMG00000187731.1 +14333 chr11 HAVANA gene 18863558 18864509 952.0 - 0 ENSG00000254529.1 unprocessed_pseudogene AC023078.1 2 OTTHUMG00000166458.1 +14334 chr11 HAVANA gene 18870989 18873462 1718.0 - 0 ENSG00000255511.1 processed_pseudogene AC023078.6 1 OTTHUMG00000166459.1 pseudo_consens +14335 chr11 HAVANA gene 18886933 18887920 988.0 - 0 ENSG00000254541.1 unprocessed_pseudogene AC023078.2 2 OTTHUMG00000166460.1 +14336 chr11 HAVANA gene 18910436 18911396 961.0 - 0 ENSG00000255536.1 unprocessed_pseudogene AC023078.7 2 OTTHUMG00000166461.1 +14337 chr11 HAVANA gene 18933813 18939507 1418.0 - 0 ENSG00000170255.7 protein_coding MRGPRX1 2 OTTHUMG00000162655.2 +14338 chr11 HAVANA gene 18934985 18939721 707.0 + 0 ENSG00000255244.1 antisense AC023078.5 2 OTTHUMG00000167394.1 +14339 chr11 HAVANA gene 18956055 18957015 961.0 - 0 ENSG00000254738.1 unprocessed_pseudogene AC023078.4 2 OTTHUMG00000166462.2 +14340 chr11 HAVANA gene 18971746 18972703 958.0 - 0 ENSG00000254720.1 unprocessed_pseudogene AC023078.3 2 OTTHUMG00000166463.1 +14341 chr11 HAVANA gene 19029697 19030438 742.0 - 0 ENSG00000255424.1 unprocessed_pseudogene AC027026.1 2 OTTHUMG00000166464.1 +14342 chr11 HAVANA gene 19054455 19060681 2036.0 - 0 ENSG00000183695.2 protein_coding MRGPRX2 2 OTTHUMG00000166098.1 +14343 chr11 HAVANA gene 19117099 19176422 7763.0 + 0 ENSG00000177054.13 protein_coding ZDHHC13 1 OTTHUMG00000166099.3 +14344 chr11 HAVANA gene 19182037 19210571 1638.0 - 0 ENSG00000129170.9 protein_coding CSRP3 2 OTTHUMG00000166100.4 +14345 chr11 HAVANA gene 19224063 19241620 4140.0 - 0 ENSG00000129173.12 protein_coding E2F8 1 OTTHUMG00000166102.4 +14346 chr11 HAVANA gene 19274540 19275269 730.0 - 0 ENSG00000254544.1 processed_pseudogene PCNAP4 1 OTTHUMG00000167395.1 pseudo_consens +14347 chr11 HAVANA gene 19196775 19281426 516.0 + 0 ENSG00000255308.1 antisense AC009652.2 2 OTTHUMG00000166101.1 +14348 chr11 HAVANA gene 19299883 19308358 648.0 + 0 ENSG00000255160.5 lincRNA AC009652.1 2 OTTHUMG00000166465.2 +14349 chr11 HAVANA gene 19380484 19385014 506.0 + 0 ENSG00000255270.1 sense_intronic NAV2-IT1 2 OTTHUMG00000166103.1 overlapping_locus +14350 chr11 ENSEMBL gene 19401872 19401981 110.0 - 0 ENSG00000200687.1 rRNA_pseudogene RNA5SP335 3 +14351 chr11 HAVANA gene 19502672 19507229 3510.0 - 0 ENSG00000255043.1 antisense NAV2-AS5 1 OTTHUMG00000166104.1 +14352 chr11 HAVANA gene 19510890 19519896 1181.0 - 0 ENSG00000254622.1 antisense NAV2-AS4 1 OTTHUMG00000166105.1 +14353 chr11 ENSEMBL gene 19575310 19575372 63.0 + 0 ENSG00000265210.1 miRNA MIR4486 3 +14354 chr11 ENSEMBL gene 19591156 19591291 136.0 - 0 ENSG00000207407.1 snoRNA RF00408 3 +14355 chr11 HAVANA gene 19710934 19712619 1686.0 - 0 ENSG00000270607.1 lincRNA AC009549.1 2 OTTHUMG00000185180.1 +14356 chr11 ENSEMBL gene 19760004 19760083 80.0 - 0 ENSG00000264309.1 miRNA MIR4694 3 +14357 chr11 HAVANA gene 19978699 19981337 598.0 - 0 ENSG00000254542.1 antisense NAV2-AS3 1 OTTHUMG00000167396.1 +14358 chr11 HAVANA gene 20043846 20049303 782.0 - 0 ENSG00000254453.1 antisense NAV2-AS2 1 OTTHUMG00000167397.1 +14359 chr11 HAVANA gene 20119684 20120632 660.0 - 0 ENSG00000254894.1 antisense NAV2-AS1 2 OTTHUMG00000167398.1 +14360 chr11 HAVANA gene 19350724 20121598 14535.0 + 0 ENSG00000166833.20 protein_coding NAV2 1 OTTHUMG00000151837.6 ncRNA_host,overlapping_locus +14361 chr11 HAVANA gene 20131730 20135465 3736.0 + 0 ENSG00000279266.1 TEC AC068860.1 2 OTTHUMG00000170883.1 +14362 chr11 HAVANA gene 20156155 20160613 1380.0 - 0 ENSG00000109851.6 protein_coding DBX1 2 OTTHUMG00000166043.2 +14363 chr11 HAVANA gene 20363685 20383783 2797.0 + 0 ENSG00000109854.13 protein_coding HTATIP2 2 OTTHUMG00000166015.6 +14364 chr11 HAVANA gene 20387530 20509294 5467.0 + 0 ENSG00000185238.12 protein_coding PRMT3 2 OTTHUMG00000166022.3 +14365 chr11 HAVANA gene 20574186 20575042 540.0 + 0 ENSG00000255291.2 processed_pseudogene HMGB1P40 1 OTTHUMG00000166023.2 pseudo_consens +14366 chr11 HAVANA gene 20599400 20659285 7114.0 + 0 ENSG00000165970.11 protein_coding SLC6A5 2 OTTHUMG00000166024.3 +14367 chr11 HAVANA gene 20670425 20671297 396.0 - 0 ENSG00000254906.1 antisense AC090707.1 2 OTTHUMG00000166044.1 +14368 chr11 ENSEMBL gene 21000881 21000997 117.0 - 0 ENSG00000201059.1 rRNA_pseudogene RNA5SP336 3 +14369 chr11 HAVANA gene 21169748 21170137 390.0 + 0 ENSG00000254816.1 processed_pseudogene AC090857.1 2 OTTHUMG00000166045.1 overlapping_locus +14370 chr11 HAVANA gene 21260061 21262570 723.0 - 0 ENSG00000255167.1 antisense AC090857.2 2 OTTHUMG00000166046.1 +14371 chr11 HAVANA gene 21283779 21284955 1177.0 + 0 ENSG00000225477.3 processed_pseudogene AC099730.1 1 OTTHUMG00000166204.1 pseudo_consens,overlapping_locus +14372 chr11 ENSEMBL gene 21383801 21383909 109.0 - 0 ENSG00000252816.1 rRNA_pseudogene RNA5SP337 3 +14373 chr11 HAVANA gene 20669551 21575681 5309.0 + 0 ENSG00000165973.18 protein_coding NELL1 1 OTTHUMG00000166042.2 overlapping_locus +14374 chr11 HAVANA gene 22113448 22117001 477.0 + 0 ENSG00000254820.1 lincRNA AC107882.1 2 OTTHUMG00000166062.1 +14375 chr11 HAVANA gene 22261209 22262256 516.0 - 0 ENSG00000255372.1 antisense AC107886.1 1 OTTHUMG00000166052.1 +14376 chr11 HAVANA gene 21799934 22283357 7547.0 + 0 ENSG00000171714.11 protein_coding ANO5 2 OTTHUMG00000166051.3 +14377 chr11 HAVANA gene 22283730 22338245 1271.0 - 0 ENSG00000254768.5 antisense AC104009.1 2 OTTHUMG00000166053.1 +14378 chr11 HAVANA gene 22361213 22362294 172.0 - 0 ENSG00000254540.1 antisense AC040936.1 2 OTTHUMG00000166064.1 +14379 chr11 HAVANA gene 22338097 22379503 4219.0 + 0 ENSG00000091664.8 protein_coding SLC17A6 2 OTTHUMG00000166063.2 +14380 chr11 HAVANA gene 22445688 22492019 684.0 - 0 ENSG00000255323.5 lincRNA LINC01495 2 OTTHUMG00000166054.1 +14381 chr11 HAVANA gene 22492112 22502846 281.0 + 0 ENSG00000255357.1 lincRNA AC055878.1 2 OTTHUMG00000166055.1 +14382 chr11 HAVANA gene 22622890 22625841 2952.0 - 0 ENSG00000183161.5 protein_coding FANCF 2 OTTHUMG00000166070.3 +14383 chr11 ENSEMBL gene 22688351 22688435 85.0 + 0 ENSG00000222427.1 rRNA_pseudogene RNA5SP338 3 +14384 chr11 HAVANA gene 22625509 22813055 4252.0 + 0 ENSG00000148935.11 protein_coding GAS2 2 OTTHUMG00000166071.5 +14385 chr11 HAVANA gene 22813799 22830299 5263.0 - 0 ENSG00000198168.8 protein_coding SVIP 2 OTTHUMG00000166072.3 +14386 chr11 HAVANA gene 22846931 22860426 917.0 - 0 ENSG00000255359.2 protein_coding CCDC179 2 OTTHUMG00000166074.2 +14387 chr11 HAVANA gene 22829380 22945393 2421.0 + 0 ENSG00000246225.6 antisense AC006299.1 2 OTTHUMG00000166073.2 +14388 chr11 HAVANA gene 23164900 23203161 930.0 + 0 ENSG00000255418.5 lincRNA AC090092.1 2 OTTHUMG00000166075.1 +14389 chr11 HAVANA gene 23370116 23377644 693.0 - 0 ENSG00000271491.1 processed_pseudogene AC100767.2 1 OTTHUMG00000184834.1 pseudo_consens +14390 chr11 HAVANA gene 23403805 23406103 2299.0 + 0 ENSG00000255293.1 processed_pseudogene WIZP1 2 OTTHUMG00000166083.2 +14391 chr11 ENSEMBL gene 23419105 23419190 86.0 - 0 ENSG00000275868.1 miRNA MIR8054 3 +14392 chr11 HAVANA gene 23431677 23431799 123.0 + 0 ENSG00000254564.1 processed_pseudogene AC100767.1 2 OTTHUMG00000166084.1 +14393 chr11 HAVANA gene 23478068 23480430 2266.0 + 0 ENSG00000254465.1 processed_pseudogene THAP12P4 1 OTTHUMG00000166085.1 pseudo_consens +14394 chr11 HAVANA gene 23520322 23521202 881.0 + 0 ENSG00000240881.1 processed_pseudogene AC068472.1 1 OTTHUMG00000158317.1 pseudo_consens +14395 chr11 HAVANA gene 23730588 23796970 683.0 + 0 ENSG00000255193.1 lincRNA AC100768.2 2 OTTHUMG00000166086.1 +14396 chr11 HAVANA gene 23761330 23804598 506.0 - 0 ENSG00000254861.1 lincRNA AC100768.1 1 OTTHUMG00000166087.1 +14397 chr11 ENSEMBL gene 23849778 23849882 105.0 + 0 ENSG00000252519.1 snRNA RNU6-783P 3 +14398 chr11 HAVANA gene 23886135 23893557 596.0 + 0 ENSG00000277803.1 processed_pseudogene AC099842.1 2 OTTHUMG00000187732.1 +14399 chr11 HAVANA gene 24235477 24262218 604.0 - 0 ENSG00000254594.5 lincRNA AC015771.1 2 OTTHUMG00000166108.1 +14400 chr11 ENSEMBL gene 24455911 24456010 100.0 + 0 ENSG00000207252.1 misc_RNA RF00019 3 +14401 chr11 HAVANA gene 24701275 24701575 301.0 + 0 ENSG00000255489.1 processed_pseudogene AC115990.1 1 OTTHUMG00000166116.1 pseudo_consens,overlapping_locus +14402 chr11 HAVANA gene 24496970 25082631 8851.0 + 0 ENSG00000187398.11 protein_coding LUZP2 2 OTTHUMG00000166109.3 overlapping_locus +14403 chr11 HAVANA gene 25140533 25141023 491.0 - 0 ENSG00000255368.1 processed_pseudogene AC087373.1 1 OTTHUMG00000166118.1 pseudo_consens +14404 chr11 HAVANA gene 25588475 25588795 321.0 - 0 ENSG00000240298.3 processed_pseudogene RPL36AP40 1 OTTHUMG00000158318.1 pseudo_consens +14405 chr11 HAVANA gene 25630720 25631041 322.0 + 0 ENSG00000255454.1 processed_pseudogene AC100770.1 2 OTTHUMG00000166088.1 +14406 chr11 HAVANA gene 25734770 25781758 984.0 + 0 ENSG00000254456.5 lincRNA AC090592.1 2 OTTHUMG00000166089.1 +14407 chr11 HAVANA gene 25924188 25926808 348.0 + 0 ENSG00000254754.1 lincRNA AC013799.1 1 OTTHUMG00000166090.1 +14408 chr11 HAVANA gene 26045987 26047598 1552.0 + 0 ENSG00000255086.1 processed_pseudogene AC024341.1 1 OTTHUMG00000166094.1 pseudo_consens +14409 chr11 HAVANA gene 26189123 26208347 510.0 + 0 ENSG00000255243.1 lincRNA AC099687.1 2 OTTHUMG00000166095.1 +14410 chr11 HAVANA gene 26285711 26288007 716.0 - 0 ENSG00000254819.1 lincRNA AC021698.1 1 OTTHUMG00000166110.1 +14411 chr11 HAVANA gene 26427051 26427412 362.0 + 0 ENSG00000255505.1 processed_pseudogene AC079064.1 1 OTTHUMG00000166111.1 pseudo_consens,overlapping_locus +14412 chr11 HAVANA gene 26559033 26572233 3356.0 - 0 ENSG00000169550.13 protein_coding MUC15 2 OTTHUMG00000166112.3 +14413 chr11 HAVANA gene 26309599 26663288 7700.0 + 0 ENSG00000134343.12 protein_coding ANO3 2 OTTHUMG00000166096.5 overlapping_locus +14414 chr11 HAVANA gene 26667019 26723427 7544.0 - 0 ENSG00000148942.14 protein_coding SLC5A12 2 OTTHUMG00000150706.4 +14415 chr11 HAVANA gene 26994184 26996121 1938.0 + 0 ENSG00000176971.3 protein_coding FIBIN 2 OTTHUMG00000166120.1 +14416 chr11 HAVANA gene 27040725 27127809 2464.0 + 0 ENSG00000129151.8 protein_coding BBOX1 2 OTTHUMG00000166121.4 +14417 chr11 HAVANA gene 27047186 27220113 1312.0 - 0 ENSG00000254560.5 antisense BBOX1-AS1 2 OTTHUMG00000166122.1 +14418 chr11 HAVANA gene 27330827 27363868 3733.0 - 0 ENSG00000109881.16 protein_coding CCDC34 2 OTTHUMG00000166211.2 +14419 chr11 HAVANA gene 27365961 27472775 6340.0 - 0 ENSG00000205213.13 protein_coding LGR4 1 OTTHUMG00000133508.3 +14420 chr11 HAVANA gene 27471729 27482433 1576.0 + 0 ENSG00000254862.5 antisense AC100771.2 2 OTTHUMG00000166124.1 +14421 chr11 HAVANA gene 27483850 27484128 279.0 + 0 ENSG00000242527.1 processed_pseudogene AC100771.1 1 OTTHUMG00000158332.1 pseudo_consens +14422 chr11 HAVANA gene 27494576 27506773 4688.0 - 0 ENSG00000148943.11 protein_coding LIN7C 2 OTTHUMG00000166193.2 +14423 chr11 ENSEMBL gene 27514970 27515047 78.0 - 0 ENSG00000278483.1 miRNA MIR8087 3 +14424 chr11 ENSEMBL gene 27521605 27521726 122.0 - 0 ENSG00000212289.1 rRNA_pseudogene RNA5SP339 3 +14425 chr11 HAVANA gene 27581680 27582055 376.0 + 0 ENSG00000240036.4 processed_pseudogene AC104563.1 2 OTTHUMG00000166149.1 overlapping_locus +14426 chr11 HAVANA gene 27617626 27634627 1165.0 - 0 ENSG00000254934.5 lincRNA LINC00678 2 OTTHUMG00000166194.1 +14427 chr11 HAVANA gene 27506838 27698174 3726.0 + 0 ENSG00000245573.7 antisense BDNF-AS 2 OTTHUMG00000166125.5 overlapping_locus +14428 chr11 HAVANA gene 27654893 27722058 7740.0 - 0 ENSG00000176697.18 protein_coding BDNF 2 OTTHUMG00000178797.2 overlapping_locus +14429 chr11 HAVANA gene 27806443 27806996 554.0 + 0 ENSG00000177447.6 processed_pseudogene CBX3P1 1 OTTHUMG00000150411.1 pseudo_consens +14430 chr11 HAVANA gene 27696312 27877648 358.0 - 0 ENSG00000255496.1 sense_overlapping AC103796.1 2 OTTHUMG00000166166.1 overlapping_locus +14431 chr11 HAVANA gene 27888838 27891033 2196.0 - 0 ENSG00000224411.3 processed_pseudogene HSP90AA2P 1 OTTHUMG00000166183.1 pseudo_consens +14432 chr11 HAVANA gene 27978669 28019575 806.0 - 0 ENSG00000255094.1 lincRNA AC090159.1 2 OTTHUMG00000166206.1 +14433 chr11 ENSEMBL gene 28056815 28056910 96.0 + 0 ENSG00000207874.1 miRNA MIR610 3 +14434 chr11 HAVANA gene 28020620 28108308 4668.0 - 0 ENSG00000121621.6 protein_coding KIF18A 2 OTTHUMG00000166195.3 +14435 chr11 HAVANA gene 28144907 28145204 298.0 - 0 ENSG00000271332.1 processed_pseudogene AC023206.1 1 OTTHUMG00000184831.1 pseudo_consens +14436 chr11 ENSEMBL gene 28261194 28261519 326.0 - 0 ENSG00000222385.1 misc_RNA RN7SKP158 3 +14437 chr11 HAVANA gene 28287235 28287625 391.0 - 0 ENSG00000238149.1 processed_pseudogene AC104978.1 1 OTTHUMG00000150447.1 pseudo_consens +14438 chr11 ENSEMBL gene 28477481 28477548 68.0 - 0 ENSG00000273912.1 miRNA MIR8068 3 +14439 chr11 HAVANA gene 28516832 28519341 747.0 + 0 ENSG00000254606.1 lincRNA AC013714.1 2 OTTHUMG00000166208.1 overlapping_locus +14440 chr11 HAVANA gene 28108248 28527041 7778.0 + 0 ENSG00000169519.20 protein_coding METTL15 2 OTTHUMG00000150448.3 overlapping_locus +14441 chr11 HAVANA gene 28679183 28683469 520.0 + 0 ENSG00000248990.1 lincRNA AC100773.1 2 OTTHUMG00000163392.1 +14442 chr11 HAVANA gene 28986635 28987498 864.0 + 0 ENSG00000272882.1 unprocessed_pseudogene OR2BH1P 2 OTTHUMG00000186077.1 +14443 chr11 HAVANA gene 28702615 29063821 1512.0 + 0 ENSG00000249867.5 lincRNA AC090833.1 2 OTTHUMG00000163393.1 overlapping_locus +14444 chr11 HAVANA gene 29159956 29266734 492.0 + 0 ENSG00000254526.1 lincRNA AC090791.1 2 OTTHUMG00000166127.1 +14445 chr11 HAVANA gene 29275655 29276565 911.0 + 0 ENSG00000255450.1 processed_pseudogene AC110056.1 1 OTTHUMG00000166128.1 pseudo_consens +14446 chr11 HAVANA gene 29391525 29393844 1673.0 + 0 ENSG00000255281.1 processed_pseudogene AC090124.3 1 OTTHUMG00000166130.4 pseudo_consens +14447 chr11 HAVANA gene 29445487 29457393 563.0 + 0 ENSG00000255227.1 lincRNA AC090124.2 2 OTTHUMG00000166131.1 +14448 chr11 HAVANA gene 29519076 29552639 563.0 + 0 ENSG00000255029.1 lincRNA AC110058.1 2 OTTHUMG00000166132.1 +14449 chr11 HAVANA gene 29335878 29594295 568.0 - 0 ENSG00000254530.1 lincRNA AC090124.1 1 OTTHUMG00000166129.1 +14450 chr11 HAVANA gene 29594918 29630664 896.0 + 0 ENSG00000255117.5 lincRNA LINC02546 2 OTTHUMG00000166133.1 +14451 chr11 HAVANA gene 29668886 29669628 743.0 - 0 ENSG00000255047.1 processed_pseudogene HNRNPRP2 1 OTTHUMG00000166153.1 pseudo_consens +14452 chr11 ENSEMBL gene 29721399 29721684 286.0 - 0 ENSG00000243505.3 misc_RNA RN7SL240P 3 +14453 chr11 HAVANA gene 29725764 29726565 802.0 + 0 ENSG00000240554.1 processed_pseudogene RPL7AP58 1 OTTHUMG00000158337.1 pseudo_consens,overlapping_locus +14454 chr11 HAVANA gene 29713909 29881714 576.0 + 0 ENSG00000254734.1 lincRNA AC107973.1 2 OTTHUMG00000166216.1 overlapping_locus +14455 chr11 HAVANA gene 29980113 29982392 2280.0 - 0 ENSG00000261340.1 lincRNA LINC01616 2 OTTHUMG00000173210.1 +14456 chr11 HAVANA gene 30009741 30017023 4195.0 - 0 ENSG00000182255.6 protein_coding KCNA4 2 OTTHUMG00000166144.2 +14457 chr11 HAVANA gene 30044058 30084343 429.0 - 0 ENSG00000254532.1 lincRNA AC124657.1 2 OTTHUMG00000166145.1 +14458 chr11 HAVANA gene 30167163 30167306 144.0 + 0 ENSG00000255288.1 processed_pseudogene AL358944.1 2 OTTHUMG00000166158.1 +14459 chr11 HAVANA gene 30231016 30235261 1944.0 + 0 ENSG00000131808.10 protein_coding FSHB 2 OTTHUMG00000166146.3 +14460 chr11 HAVANA gene 30323051 30338227 5465.0 + 0 ENSG00000152219.4 protein_coding ARL14EP 1 OTTHUMG00000166154.3 +14461 chr11 HAVANA gene 30368148 30368646 499.0 + 0 ENSG00000242353.1 processed_pseudogene RPL12P30 1 OTTHUMG00000158338.1 pseudo_consens +14462 chr11 HAVANA gene 30425552 30429268 365.0 + 0 ENSG00000255480.1 antisense AL353699.1 1 OTTHUMG00000166155.1 +14463 chr11 HAVANA gene 30384493 30586872 8197.0 - 0 ENSG00000066382.16 protein_coding MPPED2 1 OTTHUMG00000166159.5 +14464 chr11 HAVANA gene 30584130 30630508 909.0 + 0 ENSG00000254489.1 antisense MPPED2-AS1 1 OTTHUMG00000166160.1 +14465 chr11 HAVANA gene 31280672 31280987 316.0 - 0 ENSG00000255370.1 processed_pseudogene CYCSP25 1 OTTHUMG00000166209.1 pseudo_consens,overlapping_locus +14466 chr11 HAVANA gene 31305685 31314548 576.0 + 0 ENSG00000255525.1 antisense AL137804.1 2 OTTHUMG00000166210.1 +14467 chr11 HAVANA gene 30830369 31369810 13160.0 - 0 ENSG00000170959.14 protein_coding DCDC1 1 OTTHUMG00000150144.5 overlapping_locus +14468 chr11 HAVANA gene 31369840 31431849 7592.0 + 0 ENSG00000170946.14 protein_coding DNAJC24 1 OTTHUMG00000133712.3 +14469 chr11 HAVANA gene 31432401 31509645 3901.0 - 0 ENSG00000148950.10 protein_coding IMMP1L 2 OTTHUMG00000166226.4 +14470 chr11 HAVANA gene 31618124 31767953 4246.0 - 0 ENSG00000228061.6 antisense AC131571.1 2 OTTHUMG00000142920.2 +14471 chr11 HAVANA gene 31509700 31790328 27306.0 + 0 ENSG00000109911.18 protein_coding ELP4 2 OTTHUMG00000142919.10 +14472 chr11 HAVANA gene 31784779 31818062 20812.0 - 0 ENSG00000007372.22 protein_coding PAX6 1 OTTHUMG00000041447.25 +14473 chr11 HAVANA gene 31812307 32002405 8565.0 + 0 ENSG00000281880.2 processed_transcript PAUPAR 2 OTTHUMG00000189576.2 overlapping_locus +14474 chr11 HAVANA gene 32035981 32041318 1092.0 - 0 ENSG00000254584.1 antisense AL035078.1 2 OTTHUMG00000166232.1 +14475 chr11 HAVANA gene 32052843 32053260 241.0 - 0 ENSG00000254836.1 antisense AL035078.3 2 OTTHUMG00000166256.1 +14476 chr11 HAVANA gene 32064912 32072173 326.0 + 0 ENSG00000254627.1 sense_intronic AL035078.2 2 OTTHUMG00000166233.1 overlapping_locus +14477 chr11 ENSEMBL gene 32081764 32081973 210.0 + 0 ENSG00000212551.2 snoRNA RF00012 3 +14478 chr11 HAVANA gene 32085111 32085712 499.0 + 0 ENSG00000255490.1 processed_pseudogene EIF4A2P5 2 OTTHUMG00000166234.1 overlapping_locus +14479 chr11 HAVANA gene 31812391 32104665 1298.0 + 0 ENSG00000285283.1 protein_coding AL035078.4 2 OTTHUMG00000192409.1 ncRNA_host,overlapping_locus +14480 chr11 HAVANA gene 32097143 32105091 150.0 - 0 ENSG00000255252.3 antisense AL078612.1 2 OTTHUMG00000166228.1 +14481 chr11 HAVANA gene 32090904 32105755 4675.0 + 0 ENSG00000049449.9 protein_coding RCN1 1 OTTHUMG00000166227.4 overlapping_locus +14482 chr11 HAVANA gene 32132699 32143719 999.0 + 0 ENSG00000255375.2 processed_transcript AL078612.2 2 OTTHUMG00000166257.3 +14483 chr11 HAVANA gene 32112049 32343409 1194.0 - 0 ENSG00000227160.3 transcribed_unitary_pseudogene THEM7P 2 OTTHUMG00000154120.3 +14484 chr11 HAVANA gene 32387775 32435630 4113.0 - 0 ENSG00000184937.13 protein_coding WT1 1 OTTHUMG00000039556.5 +14485 chr11 ENSEMBL gene 32435738 32435846 109.0 + 0 ENSG00000278822.1 misc_RNA RF02203 3 +14486 chr11 ENSEMBL gene 32436311 32436447 137.0 + 0 ENSG00000273677.1 misc_RNA RF02204 3 +14487 chr11 ENSEMBL gene 32436797 32437030 234.0 + 0 ENSG00000278045.1 misc_RNA RF02205 3 +14488 chr11 ENSEMBL gene 32439086 32439206 121.0 + 0 ENSG00000276530.1 misc_RNA RF02208 3 +14489 chr11 ENSEMBL gene 32439716 32440009 294.0 + 0 ENSG00000273908.1 misc_RNA RF02209 3 +14490 chr11 ENSEMBL gene 32440109 32440383 275.0 + 0 ENSG00000277119.1 misc_RNA RF02210 3 +14491 chr11 HAVANA gene 32435518 32458769 5561.0 + 0 ENSG00000183242.11 bidirectional_promoter_lncRNA WT1-AS 2 OTTHUMG00000039557.3 ncRNA_host +14492 chr11 HAVANA gene 32591793 32592771 979.0 - 0 ENSG00000270903.1 processed_pseudogene HNRNPA3P9 1 OTTHUMG00000184829.1 pseudo_consens +14493 chr11 HAVANA gene 32583798 32606262 7428.0 + 0 ENSG00000149100.12 protein_coding EIF3M 1 OTTHUMG00000166258.4 +14494 chr11 HAVANA gene 32758268 32758614 347.0 + 0 ENSG00000244535.1 processed_pseudogene AL049714.1 1 OTTHUMG00000158339.1 pseudo_consens +14495 chr11 HAVANA gene 32602246 32794658 7875.0 - 0 ENSG00000186714.12 protein_coding CCDC73 2 OTTHUMG00000166279.3 +14496 chr11 HAVANA gene 32829943 32858123 5530.0 + 0 ENSG00000135378.3 protein_coding PRRG4 2 OTTHUMG00000166219.2 +14497 chr11 HAVANA gene 32892820 32993316 10899.0 + 0 ENSG00000060749.15 protein_coding QSER1 1 OTTHUMG00000166220.6 +14498 chr11 ENSEMBL gene 33004250 33004345 96.0 - 0 ENSG00000200615.1 misc_RNA RF00019 3 +14499 chr11 HAVANA gene 33015864 33033582 3326.0 + 0 ENSG00000121690.10 protein_coding DEPDC7 2 OTTHUMG00000166242.1 +14500 chr11 HAVANA gene 33075566 33076460 895.0 - 0 ENSG00000213713.3 processed_pseudogene PIGCP1 1 OTTHUMG00000166267.1 pseudo_consens +14501 chr11 HAVANA gene 33076149 33079454 3306.0 + 0 ENSG00000280798.1 lincRNA LINC00294 2 OTTHUMG00000189548.1 +14502 chr11 HAVANA gene 33039417 33105943 5370.0 + 0 ENSG00000176148.15 protein_coding TCP11L1 1 OTTHUMG00000165303.7 +14503 chr11 HAVANA gene 33077188 33162371 4517.0 - 0 ENSG00000176102.12 protein_coding CSTF3 2 OTTHUMG00000166268.4 +14504 chr11 ENSEMBL gene 33171381 33171490 110.0 - 0 ENSG00000206808.1 misc_RNA RF00019 3 +14505 chr11 HAVANA gene 33190062 33190503 442.0 - 0 ENSG00000241950.1 processed_pseudogene RPL29P23 1 OTTHUMG00000158340.1 pseudo_consens +14506 chr11 HAVANA gene 33161657 33191598 2062.0 + 0 ENSG00000247151.7 processed_transcript CSTF3-DT 2 OTTHUMG00000166243.2 +14507 chr11 ENSEMBL gene 33196547 33196637 91.0 - 0 ENSG00000200485.1 misc_RNA RF00019 3 +14508 chr11 HAVANA gene 33237008 33237409 402.0 + 0 ENSG00000241255.1 processed_pseudogene AL136126.1 1 OTTHUMG00000158342.1 pseudo_consens +14509 chr11 HAVANA gene 33256672 33357023 7958.0 + 0 ENSG00000110422.11 protein_coding HIPK3 2 OTTHUMG00000132269.4 +14510 chr11 HAVANA gene 33403216 33403605 390.0 + 0 ENSG00000254537.1 processed_pseudogene AL137161.1 2 OTTHUMG00000166277.1 +14511 chr11 HAVANA gene 33450646 33450943 298.0 + 0 ENSG00000255207.1 processed_pseudogene AL133399.1 1 OTTHUMG00000166278.1 pseudo_consens +14512 chr11 HAVANA gene 33376466 33674102 13012.0 + 0 ENSG00000110427.15 protein_coding KIAA1549L 1 OTTHUMG00000150410.7 +14513 chr11 HAVANA gene 33665220 33696701 648.0 - 0 ENSG00000255202.1 antisense AL049629.1 2 OTTHUMG00000166269.1 +14514 chr11 HAVANA gene 33698261 33700801 891.0 - 0 ENSG00000205177.6 protein_coding C11orf91 2 OTTHUMG00000166320.1 overlapping_locus +14515 chr11 HAVANA gene 33698261 33722467 953.0 - 0 ENSG00000284969.1 protein_coding AL049629.2 2 OTTHUMG00000166270.3 overlapping_locus +14516 chr11 HAVANA gene 33703010 33736491 10358.0 - 0 ENSG00000085063.15 protein_coding CD59 1 OTTHUMG00000192410.1 overlapping_locus +14517 chr11 HAVANA gene 33740939 33774543 12446.0 - 0 ENSG00000110429.13 protein_coding FBXO3 1 OTTHUMG00000166244.4 +14518 chr11 HAVANA gene 33774699 33775670 386.0 + 0 ENSG00000254508.5 antisense FBXO3-DT 2 OTTHUMG00000166272.1 +14519 chr11 HAVANA gene 33776188 33779495 486.0 + 0 ENSG00000255272.1 antisense AC113192.5 2 OTTHUMG00000166273.1 +14520 chr11 HAVANA gene 33787054 33787795 742.0 - 0 ENSG00000255161.1 processed_pseudogene AC113192.3 1 OTTHUMG00000166274.1 pseudo_consens +14521 chr11 HAVANA gene 33804768 33805641 547.0 + 0 ENSG00000255169.1 lincRNA AC113192.4 1 OTTHUMG00000166245.1 +14522 chr11 HAVANA gene 33810145 33811178 321.0 + 0 ENSG00000254619.1 lincRNA AC113192.1 2 OTTHUMG00000166246.1 +14523 chr11 HAVANA gene 33814877 33822095 308.0 - 0 ENSG00000255133.1 lincRNA AC113192.2 2 OTTHUMG00000166247.1 +14524 chr11 HAVANA gene 33880643 33881800 1158.0 + 0 ENSG00000184566.3 antisense AC132216.1 2 OTTHUMG00000187450.1 +14525 chr11 HAVANA gene 33858576 33892289 3109.0 - 0 ENSG00000135363.11 protein_coding LMO2 2 OTTHUMG00000157176.1 +14526 chr11 HAVANA gene 34051683 34101156 7689.0 + 0 ENSG00000135387.20 protein_coding CAPRIN1 2 OTTHUMG00000166248.4 +14527 chr11 HAVANA gene 34105602 34147670 5242.0 + 0 ENSG00000135372.8 protein_coding NAT10 1 OTTHUMG00000166249.3 +14528 chr11 ENSEMBL gene 34189174 34189275 102.0 + 0 ENSG00000201867.1 misc_RNA RF00019 3 +14529 chr11 HAVANA gene 34335118 34336003 886.0 - 0 ENSG00000254708.1 processed_pseudogene AL139174.1 1 OTTHUMG00000166450.1 pseudo_consens,overlapping_locus +14530 chr11 HAVANA gene 34150988 34358008 4973.0 - 0 ENSG00000166016.5 protein_coding ABTB2 2 OTTHUMG00000044382.4 overlapping_locus +14531 chr11 HAVANA gene 34404663 34404949 287.0 - 0 ENSG00000220204.1 processed_pseudogene AL035079.1 1 OTTHUMG00000044384.1 pseudo_consens +14532 chr11 HAVANA gene 34430880 34431649 479.0 + 0 ENSG00000216708.1 processed_pseudogene CIR1P3 1 OTTHUMG00000044383.1 pseudo_consens +14533 chr11 HAVANA gene 34438925 34472062 3347.0 + 0 ENSG00000121691.5 protein_coding CAT 2 OTTHUMG00000044353.4 +14534 chr11 HAVANA gene 34478793 34513805 4494.0 - 0 ENSG00000135374.9 protein_coding ELF5 2 OTTHUMG00000166451.1 +14535 chr11 HAVANA gene 34533014 34557924 389.0 - 0 ENSG00000255271.1 lincRNA AL137224.1 2 OTTHUMG00000166452.1 +14536 chr11 HAVANA gene 34570876 34573982 564.0 + 0 ENSG00000255427.1 lincRNA AC087783.1 1 OTTHUMG00000166453.1 +14537 chr11 HAVANA gene 34621093 34661057 4386.0 + 0 ENSG00000135373.12 protein_coding EHF 1 OTTHUMG00000166454.2 +14538 chr11 HAVANA gene 34709600 34710161 562.0 + 0 ENSG00000271369.1 processed_pseudogene AC087783.2 1 OTTHUMG00000184779.1 pseudo_consens +14539 chr11 HAVANA gene 34742906 34743199 294.0 + 0 ENSG00000270491.1 processed_pseudogene AL359999.1 1 OTTHUMG00000184768.1 pseudo_consens +14540 chr11 HAVANA gene 34853094 34916499 5337.0 - 0 ENSG00000149089.12 protein_coding APIP 2 OTTHUMG00000166455.2 +14541 chr11 ENSEMBL gene 34941837 34941920 84.0 + 0 ENSG00000251862.2 miRNA MIR1343 3 +14542 chr11 HAVANA gene 34915829 35020591 3760.0 + 0 ENSG00000110435.11 protein_coding PDHX 1 OTTHUMG00000166491.3 ncRNA_host +14543 chr11 HAVANA gene 35132655 35138032 1214.0 - 0 ENSG00000255521.1 antisense AL356215.1 2 OTTHUMG00000166326.1 +14544 chr11 HAVANA gene 35212550 35214007 704.0 + 0 ENSG00000251194.2 sense_intronic AL133330.1 2 OTTHUMG00000166288.1 overlapping_locus +14545 chr11 HAVANA gene 35210343 35214985 587.0 - 0 ENSG00000255443.1 antisense CD44-AS1 2 OTTHUMG00000166327.1 +14546 chr11 HAVANA gene 35138870 35232402 10057.0 + 0 ENSG00000026508.18 protein_coding CD44 1 OTTHUMG00000044388.9 overlapping_locus +14547 chr11 HAVANA gene 35281813 35286009 776.0 + 0 ENSG00000255004.1 antisense AL133330.2 2 OTTHUMG00000166308.1 +14548 chr11 HAVANA gene 35374265 35374474 210.0 + 0 ENSG00000215380.2 processed_pseudogene AC090625.1 2 OTTHUMG00000133753.1 +14549 chr11 HAVANA gene 35251205 35420063 22835.0 - 0 ENSG00000110436.12 protein_coding SLC1A2 1 OTTHUMG00000044391.13 +14550 chr11 HAVANA gene 35419057 35421002 518.0 + 0 ENSG00000255542.1 antisense AC090625.2 2 OTTHUMG00000166309.1 +14551 chr11 HAVANA gene 35431823 35530300 3863.0 - 0 ENSG00000149090.11 protein_coding PAMR1 1 OTTHUMG00000166328.4 +14552 chr11 HAVANA gene 35579430 35585310 537.0 - 0 ENSG00000254669.1 lincRNA AL135934.1 2 OTTHUMG00000166329.1 +14553 chr11 HAVANA gene 35618419 35620868 2450.0 + 0 ENSG00000179431.6 protein_coding FJX1 2 OTTHUMG00000166310.1 +14554 chr11 HAVANA gene 35656694 35661339 471.0 + 0 ENSG00000254686.2 lincRNA AL138812.1 2 OTTHUMG00000166311.2 +14555 chr11 HAVANA gene 35662805 35818007 13077.0 + 0 ENSG00000166326.6 protein_coding TRIM44 2 OTTHUMG00000166312.2 +14556 chr11 HAVANA gene 35824192 35838523 942.0 + 0 ENSG00000285705.1 lincRNA AC090692.2 2 OTTHUMG00000193252.1 +14557 chr11 HAVANA gene 35860249 35861498 1250.0 - 0 ENSG00000186082.9 processed_pseudogene KRT18P14 1 OTTHUMG00000166330.1 pseudo_consens +14558 chr11 HAVANA gene 35894987 35897735 2138.0 + 0 ENSG00000285740.1 lincRNA AC090692.3 2 OTTHUMG00000192914.1 +14559 chr11 HAVANA gene 35915051 35918739 906.0 - 0 ENSG00000254919.1 antisense AC090692.1 2 OTTHUMG00000166331.2 +14560 chr11 HAVANA gene 35967010 35968676 1667.0 - 0 ENSG00000254672.1 processed_pseudogene AL136146.1 1 OTTHUMG00000166449.1 pseudo_consens +14561 chr11 HAVANA gene 35972428 35989007 494.0 + 0 ENSG00000255256.1 sense_intronic AL136146.2 2 OTTHUMG00000166314.1 overlapping_locus +14562 chr11 HAVANA gene 35997226 35997675 450.0 - 0 ENSG00000241228.1 processed_pseudogene RPL12P31 1 OTTHUMG00000158347.1 pseudo_consens +14563 chr11 ENSEMBL gene 36010098 36010204 107.0 + 0 ENSG00000263389.1 miRNA MIR3973 3 +14564 chr11 HAVANA gene 36196248 36197901 1654.0 + 0 ENSG00000280321.1 TEC AC129502.1 2 OTTHUMG00000166315.1 overlapping_locus +14565 chr11 HAVANA gene 35943981 36232136 4575.0 + 0 ENSG00000179241.12 protein_coding LDLRAD3 2 OTTHUMG00000166313.1 ncRNA_host,overlapping_locus +14566 chr11 HAVANA gene 36269284 36289449 6592.0 - 0 ENSG00000110442.11 protein_coding COMMD9 1 OTTHUMG00000166333.2 +14567 chr11 HAVANA gene 36321158 36323440 535.0 - 0 ENSG00000254566.1 lincRNA AC087277.1 2 OTTHUMG00000166335.1 +14568 chr11 HAVANA gene 36386521 36388250 151.0 + 0 ENSG00000255186.1 sense_intronic AC087277.2 2 OTTHUMG00000166389.1 overlapping_locus +14569 chr11 HAVANA gene 36425447 36426122 478.0 - 0 ENSG00000255060.1 antisense AC009656.1 2 OTTHUMG00000166390.1 +14570 chr11 HAVANA gene 36296288 36465204 6616.0 + 0 ENSG00000135362.13 protein_coding PRR5L 1 OTTHUMG00000166334.4 overlapping_locus +14571 chr11 HAVANA gene 36487027 36510272 4871.0 - 0 ENSG00000175104.14 protein_coding TRAF6 2 OTTHUMG00000166391.1 +14572 chr11 HAVANA gene 36510361 36510537 177.0 + 0 ENSG00000280331.1 TEC AC061999.1 2 OTTHUMG00000173198.1 +14573 chr11 HAVANA gene 36510709 36593156 7815.0 + 0 ENSG00000166349.9 protein_coding RAG1 1 OTTHUMG00000166392.2 +14574 chr11 HAVANA gene 36575574 36598279 3502.0 - 0 ENSG00000175097.7 protein_coding RAG2 2 OTTHUMG00000166393.4 +14575 chr11 HAVANA gene 36594493 36659290 1474.0 + 0 ENSG00000166352.15 protein_coding C11orf74 2 OTTHUMG00000166397.3 +14576 chr11 HAVANA gene 36696317 36697867 883.0 + 0 ENSG00000254498.1 processed_pseudogene AC104042.1 1 OTTHUMG00000166332.1 pseudo_consens +14577 chr11 ENSEMBL gene 37702125 37702220 96.0 - 0 ENSG00000251838.1 snoRNA RF00322 3 +14578 chr11 HAVANA gene 37725666 37726456 791.0 + 0 ENSG00000242834.1 processed_pseudogene RPL7AP56 1 OTTHUMG00000158348.1 pseudo_consens +14579 chr11 HAVANA gene 37938601 37954663 376.0 + 0 ENSG00000254516.1 lincRNA AC103798.1 2 OTTHUMG00000166370.1 +14580 chr11 HAVANA gene 38013510 38014141 632.0 - 0 ENSG00000279004.1 TEC AC103798.2 2 OTTHUMG00000173212.1 +14581 chr11 HAVANA gene 38211389 38212799 885.0 + 0 ENSG00000254784.1 processed_pseudogene LRRC6P1 1 OTTHUMG00000166456.1 pseudo_consens +14582 chr11 HAVANA gene 38498995 38500186 510.0 + 0 ENSG00000255477.1 lincRNA AC021713.1 2 OTTHUMG00000166457.1 +14583 chr11 HAVANA gene 38618264 38646356 526.0 - 0 ENSG00000255175.5 lincRNA AC022796.1 2 OTTHUMG00000166466.1 +14584 chr11 HAVANA gene 38646451 38686323 2416.0 + 0 ENSG00000254562.6 lincRNA LINC01493 2 OTTHUMG00000166467.2 +14585 chr11 HAVANA gene 39024631 39161638 2383.0 - 0 ENSG00000285751.1 lincRNA AC021723.2 2 OTTHUMG00000192879.1 +14586 chr11 HAVANA gene 39161453 39161967 515.0 + 0 ENSG00000240975.1 processed_pseudogene AC021723.1 1 OTTHUMG00000158349.1 pseudo_consens +14587 chr11 ENSEMBL gene 39261107 39261213 107.0 + 0 ENSG00000201591.1 snRNA RNU6-99P 3 +14588 chr11 HAVANA gene 39873782 39874388 607.0 + 0 ENSG00000270588.1 processed_pseudogene AC021749.1 1 OTTHUMG00000184766.1 pseudo_consens +14589 chr11 HAVANA gene 40083710 40084517 808.0 - 0 ENSG00000255347.1 processed_pseudogene AC021820.1 1 OTTHUMG00000166382.1 pseudo_consens +14590 chr11 HAVANA gene 40107244 40112599 5356.0 - 0 ENSG00000279675.1 TEC AC080100.1 2 OTTHUMG00000173211.1 +14591 chr11 ENSEMBL gene 40351564 40351672 109.0 + 0 ENSG00000206806.1 misc_RNA RF00019 3 +14592 chr11 HAVANA gene 40444371 40513269 3818.0 - 0 ENSG00000254579.2 processed_pseudogene AC090720.1 2 OTTHUMG00000166374.3 overlapping_locus +14593 chr11 ENSEMBL gene 41122907 41123012 106.0 - 0 ENSG00000252922.1 snRNA RNU6-365P 3 +14594 chr11 HAVANA gene 41394595 41426504 578.0 + 0 ENSG00000255132.1 lincRNA AC090138.1 2 OTTHUMG00000166372.1 +14595 chr11 HAVANA gene 40114203 41459773 5356.0 - 0 ENSG00000148948.7 protein_coding LRRC4C 2 OTTHUMG00000166383.4 ncRNA_host,overlapping_locus +14596 chr11 HAVANA gene 41538434 41538986 553.0 + 0 ENSG00000242729.1 processed_pseudogene AC021006.1 1 OTTHUMG00000158368.2 pseudo_consens +14597 chr11 HAVANA gene 41660030 41660221 192.0 + 0 ENSG00000255563.1 processed_pseudogene AC021006.3 2 OTTHUMG00000166375.1 +14598 chr11 HAVANA gene 41518895 41714448 1026.0 - 0 ENSG00000255388.5 lincRNA AC021006.2 2 OTTHUMG00000166488.1 +14599 chr11 HAVANA gene 41797543 41797964 422.0 + 0 ENSG00000254668.1 processed_pseudogene AC023442.1 2 OTTHUMG00000166377.1 overlapping_locus +14600 chr11 HAVANA gene 41714534 41857733 2821.0 + 0 ENSG00000255171.6 lincRNA LINC01499 2 OTTHUMG00000166376.3 overlapping_locus +14601 chr11 HAVANA gene 41855920 41875997 1160.0 + 0 ENSG00000255279.1 lincRNA AC023442.3 1 OTTHUMG00000166378.1 +14602 chr11 HAVANA gene 41876634 41877078 270.0 + 0 ENSG00000254822.1 lincRNA AC023442.2 2 OTTHUMG00000166379.1 +14603 chr11 HAVANA gene 41993385 42163851 977.0 - 0 ENSG00000255300.5 lincRNA AC079917.1 2 OTTHUMG00000166487.1 +14604 chr11 HAVANA gene 42183292 42253712 1091.0 - 0 ENSG00000255109.5 lincRNA AC090458.1 2 OTTHUMG00000166380.1 +14605 chr11 HAVANA gene 42939775 42939998 224.0 + 0 ENSG00000254914.1 processed_pseudogene AC109810.1 1 OTTHUMG00000166547.1 pseudo_consens +14606 chr11 HAVANA gene 43063637 43065932 1448.0 - 0 ENSG00000271028.1 processed_pseudogene AC009643.2 1 OTTHUMG00000184826.1 pseudo_consens,overlapping_locus +14607 chr11 HAVANA gene 43065686 43066076 391.0 - 0 ENSG00000254725.1 processed_pseudogene AC009643.1 2 OTTHUMG00000166548.1 overlapping_locus +14608 chr11 HAVANA gene 43120762 43269393 2513.0 - 0 ENSG00000251557.2 transcribed_processed_pseudogene HNRNPKP3 1 OTTHUMG00000166550.1 pseudo_consens +14609 chr11 ENSEMBL gene 43331261 43331356 96.0 + 0 ENSG00000252652.1 misc_RNA RF00019 3 +14610 chr11 HAVANA gene 43311963 43344529 4651.0 + 0 ENSG00000166181.12 protein_coding API5 2 OTTHUMG00000166395.6 ncRNA_host +14611 chr11 HAVANA gene 43328748 43359296 787.0 - 0 ENSG00000254907.1 antisense AC087276.2 2 OTTHUMG00000166396.1 +14612 chr11 HAVANA gene 43378882 43385671 444.0 - 0 ENSG00000255340.1 antisense AC087276.3 2 OTTHUMG00000166551.1 +14613 chr11 HAVANA gene 43390283 43395495 183.0 + 0 ENSG00000254577.1 sense_overlapping AC087276.1 2 OTTHUMG00000166399.1 overlapping_locus +14614 chr11 ENSEMBL gene 43435132 43435397 266.0 - 0 ENSG00000252355.1 misc_RNA RN7SKP287 3 +14615 chr11 HAVANA gene 43466392 43466871 480.0 + 0 ENSG00000254463.1 processed_pseudogene PPIAP41 1 OTTHUMG00000166400.1 pseudo_consens,overlapping_locus +14616 chr11 HAVANA gene 43358932 43494933 11284.0 + 0 ENSG00000052841.14 protein_coding TTC17 2 OTTHUMG00000166398.5 overlapping_locus +14617 chr11 HAVANA gene 43522036 43523264 1229.0 + 0 ENSG00000213697.3 processed_pseudogene CTBP2P6 1 OTTHUMG00000166401.1 pseudo_consens +14618 chr11 ENSEMBL gene 43559656 43559753 98.0 + 0 ENSG00000211568.1 miRNA MIR670 3 +14619 chr11 HAVANA gene 43569306 43570395 897.0 + 0 ENSG00000235661.3 lincRNA MIR670HG 2 OTTHUMG00000191841.1 overlapping_locus +14620 chr11 ENSEMBL gene 43581394 43581483 90.0 + 0 ENSG00000199077.3 miRNA MIR129-2 3 +14621 chr11 HAVANA gene 43556436 43673393 1224.0 + 0 ENSG00000283217.1 lincRNA AC068205.1 2 OTTHUMG00000191840.2 ncRNA_host,overlapping_locus +14622 chr11 HAVANA gene 43718676 43719143 468.0 + 0 ENSG00000283393.1 processed_pseudogene AC068205.3 1 OTTHUMG00000191844.1 pseudo_consens +14623 chr11 HAVANA gene 43718676 43719146 471.0 + 0 ENSG00000243721.1 processed_pseudogene RPL23AP63 1 OTTHUMG00000158373.1 pseudo_consens,overlapping_locus +14624 chr11 HAVANA gene 43733761 43734564 804.0 + 0 ENSG00000283483.1 processed_pseudogene AC068205.4 1 OTTHUMG00000191845.1 pseudo_consens +14625 chr11 HAVANA gene 43733759 43734564 806.0 + 0 ENSG00000254512.1 processed_pseudogene PHBP2 1 OTTHUMG00000166404.1 pseudo_consens,overlapping_locus +14626 chr11 HAVANA gene 43578889 43840030 2971.0 + 0 ENSG00000283341.1 processed_transcript AC068205.2 2 OTTHUMG00000191842.2 ncRNA_host,overlapping_locus +14627 chr11 HAVANA gene 43855913 43856404 289.0 - 0 ENSG00000283375.1 antisense AC087521.4 2 OTTHUMG00000191846.1 +14628 chr11 HAVANA gene 43680558 43856617 7838.0 + 0 ENSG00000149084.12 protein_coding HSD17B12 1 OTTHUMG00000166403.4 overlapping_locus +14629 chr11 HAVANA gene 43829709 43880726 3296.0 - 0 ENSG00000246250.2 antisense AC087521.2 1 OTTHUMG00000166552.1 +14630 chr11 HAVANA gene 43897456 43899636 2181.0 + 0 ENSG00000213693.4 processed_pseudogene SEC14L1P1 1 OTTHUMG00000166418.1 pseudo_consens,overlapping_locus +14631 chr11 HAVANA gene 43880811 43920266 2372.0 + 0 ENSG00000166199.12 protein_coding ALKBH3 2 OTTHUMG00000166417.3 overlapping_locus +14632 chr11 HAVANA gene 43909292 43920944 2334.0 - 0 ENSG00000244926.6 antisense ALKBH3-AS1 2 OTTHUMG00000166553.1 +14633 chr11 HAVANA gene 43942505 43944338 1834.0 + 0 ENSG00000187479.6 protein_coding C11orf96 2 OTTHUMG00000166555.5 overlapping_locus +14634 chr11 HAVANA gene 43943787 43947206 2045.0 - 0 ENSG00000244953.1 lincRNA AC087521.1 2 OTTHUMG00000166556.1 +14635 chr11 HAVANA gene 43921059 44001157 1143.0 + 0 ENSG00000254409.2 sense_overlapping AC087521.3 2 OTTHUMG00000166493.1 overlapping_locus +14636 chr11 HAVANA gene 44047981 44059977 1867.0 + 0 ENSG00000205126.2 protein_coding ACCSL 2 OTTHUMG00000166426.2 +14637 chr11 HAVANA gene 44071462 44072403 464.0 + 0 ENSG00000255165.1 sense_intronic AC134775.1 2 OTTHUMG00000166430.1 overlapping_locus +14638 chr11 HAVANA gene 44065925 44084222 5826.0 + 0 ENSG00000110455.13 protein_coding ACCS 2 OTTHUMG00000166427.4 overlapping_locus +14639 chr11 HAVANA gene 44095549 44245429 5286.0 + 0 ENSG00000151348.13 protein_coding EXT2 2 OTTHUMG00000166498.3 +14640 chr11 HAVANA gene 44260440 44310166 5754.0 - 0 ENSG00000052850.6 protein_coding ALX4 2 OTTHUMG00000166557.2 +14641 chr11 HAVANA gene 44468464 44470429 520.0 + 0 ENSG00000255451.1 lincRNA AC010768.4 1 OTTHUMG00000166470.1 +14642 chr11 HAVANA gene 44539778 44540693 792.0 - 0 ENSG00000255106.1 processed_pseudogene AC010768.3 1 OTTHUMG00000166471.1 pseudo_consens +14643 chr11 HAVANA gene 44604508 44605337 543.0 - 0 ENSG00000254693.1 antisense AC010768.1 1 OTTHUMG00000166473.1 +14644 chr11 HAVANA gene 44606170 44608101 567.0 - 0 ENSG00000255092.1 antisense AC010768.2 2 OTTHUMG00000166474.1 +14645 chr11 HAVANA gene 44564427 44620363 4054.0 + 0 ENSG00000085117.11 protein_coding CD82 1 OTTHUMG00000166472.2 +14646 chr11 HAVANA gene 44629357 44629674 318.0 + 0 ENSG00000244267.1 processed_pseudogene RPL34P22 1 OTTHUMG00000158375.2 pseudo_consens +14647 chr11 HAVANA gene 44656771 44656920 150.0 + 0 ENSG00000275725.1 processed_pseudogene AC104010.1 2 OTTHUMG00000187733.1 +14648 chr11 HAVANA gene 44694863 44696301 789.0 - 0 ENSG00000255079.1 lincRNA AC104241.2 1 OTTHUMG00000166475.1 +14649 chr11 HAVANA gene 44719392 44736692 628.0 - 0 ENSG00000255032.1 lincRNA AC104241.1 2 OTTHUMG00000166476.1 +14650 chr11 HAVANA gene 44726465 44932421 5871.0 + 0 ENSG00000157570.11 protein_coding TSPAN18 1 OTTHUMG00000163883.4 +14651 chr11 HAVANA gene 44885903 44951306 7345.0 - 0 ENSG00000175274.18 protein_coding TP53I11 1 OTTHUMG00000165714.4 +14652 chr11 HAVANA gene 44973902 44978028 1239.0 + 0 ENSG00000254654.1 lincRNA AC068858.1 2 OTTHUMG00000166477.1 +14653 chr11 HAVANA gene 45095806 45235110 13940.0 + 0 ENSG00000019485.13 protein_coding PRDM11 1 OTTHUMG00000166478.6 +14654 chr11 HAVANA gene 45215815 45235292 567.0 - 0 ENSG00000254664.1 antisense AC103681.2 1 OTTHUMG00000166503.1 +14655 chr11 HAVANA gene 45253884 45254649 570.0 + 0 ENSG00000254497.1 antisense AC103681.1 2 OTTHUMG00000166505.1 +14656 chr11 HAVANA gene 45240301 45286319 5424.0 - 0 ENSG00000019505.7 protein_coding SYT13 2 OTTHUMG00000166504.2 +14657 chr11 HAVANA gene 45355371 45366121 1380.0 + 0 ENSG00000254427.1 lincRNA AC103736.1 2 OTTHUMG00000166506.1 +14658 chr11 HAVANA gene 45371397 45388508 2597.0 + 0 ENSG00000255267.3 lincRNA AC018716.2 2 OTTHUMG00000166507.1 +14659 chr11 HAVANA gene 45399448 45400528 561.0 + 0 ENSG00000254651.1 lincRNA AC018716.1 2 OTTHUMG00000166509.1 +14660 chr11 HAVANA gene 45387215 45513802 606.0 - 0 ENSG00000255041.1 lincRNA AC103855.3 2 OTTHUMG00000166508.1 overlapping_locus +14661 chr11 HAVANA gene 45514187 45514451 265.0 + 0 ENSG00000255519.1 processed_pseudogene AC103855.4 2 OTTHUMG00000166511.1 +14662 chr11 HAVANA gene 45489689 45542474 1121.0 - 0 ENSG00000254746.5 processed_transcript AC103855.2 2 OTTHUMG00000166510.1 overlapping_locus +14663 chr11 HAVANA gene 45582525 45583474 564.0 + 0 ENSG00000254514.1 lincRNA AC103855.1 1 OTTHUMG00000166512.1 +14664 chr11 HAVANA gene 45651529 45652691 249.0 + 0 ENSG00000255091.1 antisense AC087442.1 2 OTTHUMG00000166514.1 +14665 chr11 HAVANA gene 45648877 45665622 3478.0 - 0 ENSG00000175264.7 protein_coding CHST1 2 OTTHUMG00000166513.1 +14666 chr11 ENSEMBL gene 45691704 45691776 73.0 - 0 ENSG00000276639.1 miRNA MIR7154 3 +14667 chr11 HAVANA gene 45733994 45735766 860.0 - 0 ENSG00000255426.1 lincRNA AC044839.3 2 OTTHUMG00000166516.1 +14668 chr11 HAVANA gene 45722308 45744254 3247.0 + 0 ENSG00000254519.3 processed_transcript AC044839.1 2 OTTHUMG00000166515.3 +14669 chr11 HAVANA gene 45750823 45751871 597.0 - 0 ENSG00000255226.1 lincRNA AC044839.2 1 OTTHUMG00000166517.1 +14670 chr11 HAVANA gene 45771432 45772358 649.0 + 0 ENSG00000205106.4 lincRNA DKFZp779M0652 1 OTTHUMG00000166518.1 +14671 chr11 HAVANA gene 45804072 45813015 4505.0 + 0 ENSG00000181830.8 protein_coding SLC35C1 2 OTTHUMG00000166519.2 +14672 chr11 HAVANA gene 45813219 45825258 469.0 + 0 ENSG00000255447.1 lincRNA AC044839.4 1 OTTHUMG00000167002.1 +14673 chr11 HAVANA gene 45847118 45883248 6200.0 + 0 ENSG00000121671.11 protein_coding CRY2 2 OTTHUMG00000153225.4 +14674 chr11 HAVANA gene 45905941 45906461 409.0 - 0 ENSG00000255498.1 antisense AC068385.1 2 OTTHUMG00000167003.1 +14675 chr11 HAVANA gene 45885651 45906465 3498.0 + 0 ENSG00000121653.11 protein_coding MAPK8IP1 1 OTTHUMG00000134324.2 +14676 chr11 HAVANA gene 45906513 45907282 770.0 - 0 ENSG00000234776.4 protein_coding C11orf94 2 OTTHUMG00000167004.2 +14677 chr11 HAVANA gene 45909669 45918812 3013.0 - 0 ENSG00000121680.15 protein_coding PEX16 2 OTTHUMG00000167005.1 +14678 chr11 HAVANA gene 45921621 45929096 3115.0 + 0 ENSG00000165905.17 protein_coding LARGE2 1 OTTHUMG00000167037.1 +14679 chr11 HAVANA gene 46116578 46117318 605.0 + 0 ENSG00000254653.1 lincRNA AC024475.1 2 OTTHUMG00000167041.1 +14680 chr11 HAVANA gene 45929323 46121178 11190.0 - 0 ENSG00000135365.15 protein_coding PHF21A 2 OTTHUMG00000167038.2 +14681 chr11 HAVANA gene 46142716 46143594 879.0 + 0 ENSG00000254871.1 processed_pseudogene AC024475.2 1 OTTHUMG00000167042.1 pseudo_consens,overlapping_locus +14682 chr11 HAVANA gene 46123031 46177106 1426.0 + 0 ENSG00000255314.3 lincRNA AC024475.4 2 OTTHUMG00000167043.3 overlapping_locus +14683 chr11 HAVANA gene 46213824 46220438 1204.0 - 0 ENSG00000255269.2 lincRNA AC024475.3 2 OTTHUMG00000167044.2 +14684 chr11 HAVANA gene 46238382 46239267 653.0 + 0 ENSG00000254639.1 lincRNA AC116021.1 2 OTTHUMG00000166909.1 +14685 chr11 HAVANA gene 46256355 46274547 354.0 - 0 ENSG00000255007.1 antisense LINC02489 2 OTTHUMG00000166910.1 +14686 chr11 HAVANA gene 46277661 46321422 4037.0 + 0 ENSG00000157613.10 protein_coding CREB3L1 1 OTTHUMG00000166423.7 +14687 chr11 ENSEMBL gene 46376402 46376484 83.0 + 0 ENSG00000264102.1 miRNA MIR4688 3 +14688 chr11 HAVANA gene 46332905 46380554 10787.0 + 0 ENSG00000149091.15 protein_coding DGKZ 2 OTTHUMG00000166437.8 ncRNA_host +14689 chr11 HAVANA gene 46380756 46383837 2196.0 + 0 ENSG00000110492.15 protein_coding MDK 2 OTTHUMG00000150315.6 +14690 chr11 HAVANA gene 46385098 46386608 1511.0 - 0 ENSG00000180720.7 protein_coding CHRM4 2 OTTHUMG00000154371.1 +14691 chr11 HAVANA gene 46428653 46429150 498.0 - 0 ENSG00000244313.3 processed_pseudogene AC024293.1 1 OTTHUMG00000158376.1 pseudo_consens,overlapping_locus +14692 chr11 ENSEMBL gene 46451807 46451887 81.0 + 0 ENSG00000283497.1 miRNA MIR3160-2 3 +14693 chr11 ENSEMBL gene 46451805 46451889 85.0 - 0 ENSG00000265014.1 miRNA MIR3160-1 3 +14694 chr11 HAVANA gene 46572948 46587808 1178.0 + 0 ENSG00000285658.1 antisense AC127035.1 2 OTTHUMG00000193313.1 +14695 chr11 HAVANA gene 46396414 46594125 7673.0 - 0 ENSG00000110497.14 protein_coding AMBRA1 1 OTTHUMG00000166500.5 ncRNA_host,overlapping_locus +14696 chr11 HAVANA gene 46602861 46617909 2662.0 - 0 ENSG00000180423.4 protein_coding HARBI1 2 OTTHUMG00000166537.3 +14697 chr11 HAVANA gene 46617527 46674818 7001.0 + 0 ENSG00000175224.16 protein_coding ATG13 1 OTTHUMG00000166538.4 +14698 chr11 HAVANA gene 46677080 46700615 6138.0 - 0 ENSG00000175220.11 protein_coding ARHGAP1 2 OTTHUMG00000166567.2 +14699 chr11 HAVANA gene 46700818 46705912 3078.0 + 0 ENSG00000175213.2 protein_coding ZNF408 2 OTTHUMG00000166568.2 +14700 chr11 HAVANA gene 46719180 46739506 2550.0 + 0 ENSG00000180210.14 protein_coding F2 1 OTTHUMG00000150344.3 +14701 chr11 ENSEMBL gene 46753125 46753192 68.0 - 0 ENSG00000263540.1 miRNA MIR5582 3 +14702 chr11 ENSEMBL gene 46758766 46758873 108.0 - 0 ENSG00000252427.1 snoRNA RF00573 3 +14703 chr11 ENSEMBL gene 46762389 46762499 111.0 - 0 ENSG00000212135.1 snoRNA SNORD67 3 +14704 chr11 HAVANA gene 46743048 46846308 8538.0 - 0 ENSG00000175216.14 protein_coding CKAP5 1 OTTHUMG00000166599.4 ncRNA_host +14705 chr11 HAVANA gene 46846412 46874396 1614.0 + 0 ENSG00000247675.6 antisense LRP4-AS1 2 OTTHUMG00000166699.1 +14706 chr11 HAVANA gene 46856868 46918642 8597.0 - 0 ENSG00000134569.9 protein_coding LRP4 2 OTTHUMG00000166700.2 +14707 chr11 HAVANA gene 47041027 47041945 919.0 - 0 ENSG00000271350.1 processed_pseudogene AC103792.1 1 OTTHUMG00000184824.1 pseudo_consens +14708 chr11 HAVANA gene 47123104 47130801 332.0 - 0 ENSG00000255520.1 antisense AC090589.2 2 OTTHUMG00000166772.1 +14709 chr11 HAVANA gene 46936689 47164385 6693.0 + 0 ENSG00000149179.13 protein_coding C11orf49 2 OTTHUMG00000166725.4 +14710 chr11 HAVANA gene 47168281 47169563 574.0 - 0 ENSG00000270060.1 sense_intronic AC090589.3 2 OTTHUMG00000183948.1 overlapping_locus +14711 chr11 HAVANA gene 47164299 47177125 5918.0 - 0 ENSG00000149182.14 protein_coding ARFGAP2 1 OTTHUMG00000166773.5 overlapping_locus +14712 chr11 ENSEMBL gene 47179611 47179737 127.0 - 0 ENSG00000275208.1 miRNA MIR6745 3 +14713 chr11 HAVANA gene 47177525 47186443 2752.0 - 0 ENSG00000165912.15 protein_coding PACSIN3 1 OTTHUMG00000166870.5 ncRNA_host +14714 chr11 HAVANA gene 47191181 47191542 362.0 - 0 ENSG00000243802.2 processed_pseudogene AC090589.1 1 OTTHUMG00000158381.2 pseudo_consens +14715 chr11 HAVANA gene 47220218 47221751 610.0 - 0 ENSG00000256897.1 antisense AC018410.2 2 OTTHUMG00000167883.1 +14716 chr11 HAVANA gene 47214465 47239240 4897.0 + 0 ENSG00000134574.11 protein_coding DDB2 2 OTTHUMG00000187453.6 +14717 chr11 HAVANA gene 47239302 47248906 3484.0 - 0 ENSG00000134575.9 protein_coding ACP2 1 OTTHUMG00000166949.7 +14718 chr11 HAVANA gene 47248300 47269032 4533.0 + 0 ENSG00000025434.18 protein_coding NR1H3 1 OTTHUMG00000150628.10 +14719 chr11 HAVANA gene 47270657 47272110 536.0 - 0 ENSG00000256746.5 antisense AC018410.1 2 OTTHUMG00000167884.1 +14720 chr11 HAVANA gene 47323983 47324181 199.0 + 0 ENSG00000283338.1 unprocessed_pseudogene AC090582.1 2 OTTHUMG00000191858.1 +14721 chr11 HAVANA gene 47269161 47330031 8366.0 + 0 ENSG00000110514.19 protein_coding MADD 1 OTTHUMG00000150350.8 +14722 chr11 HAVANA gene 47331397 47352702 4280.0 - 0 ENSG00000134571.10 protein_coding MYBPC3 2 OTTHUMG00000166986.6 +14723 chr11 HAVANA gene 47354860 47378576 2069.0 - 0 ENSG00000066336.11 protein_coding SPI1 1 OTTHUMG00000150150.4 +14724 chr11 ENSEMBL gene 47400970 47401042 73.0 + 0 ENSG00000264583.1 miRNA MIR4487 3 +14725 chr11 HAVANA gene 47383148 47409190 1113.0 - 0 ENSG00000255197.5 antisense AC090559.1 2 OTTHUMG00000167691.1 +14726 chr11 HAVANA gene 47407132 47416501 4584.0 + 0 ENSG00000165915.13 protein_coding SLC39A13 1 OTTHUMG00000166890.4 +14727 chr11 HAVANA gene 47418769 47426473 2276.0 - 0 ENSG00000165916.8 protein_coding PSMC3 1 OTTHUMG00000167692.4 +14728 chr11 HAVANA gene 47437757 47449178 1918.0 - 0 ENSG00000165917.9 protein_coding RAPSN 1 OTTHUMG00000166891.2 +14729 chr11 HAVANA gene 47513605 47514889 430.0 - 0 ENSG00000270072.1 sense_intronic AC090559.2 2 OTTHUMG00000183949.1 overlapping_locus +14730 chr11 ENSEMBL gene 47557534 47557833 300.0 - 0 ENSG00000265559.2 misc_RNA RN7SL652P 3 +14731 chr11 HAVANA gene 47465933 47565569 10452.0 - 0 ENSG00000149187.18 protein_coding CELF1 1 OTTHUMG00000166526.6 ncRNA_host,overlapping_locus +14732 chr11 HAVANA gene 47565430 47573461 2740.0 + 0 ENSG00000110536.13 protein_coding PTPMT1 2 OTTHUMG00000166892.3 overlapping_locus +14733 chr11 ENSEMBL gene 47576471 47576588 118.0 - 0 ENSG00000200376.1 snRNA RNU5E-10P 3 +14734 chr11 HAVANA gene 47577725 47578277 553.0 + 0 ENSG00000231880.2 antisense KF459542.1 2 OTTHUMG00000187459.2 overlapping_locus +14735 chr11 HAVANA gene 47572197 47579015 3302.0 - 0 ENSG00000123444.13 protein_coding KBTBD4 1 OTTHUMG00000166894.4 ncRNA_host +14736 chr11 HAVANA gene 47565336 47584562 3670.0 + 0 ENSG00000213619.9 protein_coding NDUFS3 1 OTTHUMG00000166893.4 overlapping_locus +14737 chr11 HAVANA gene 47586693 47589194 1388.0 + 0 ENSG00000196666.4 protein_coding FAM180B 2 OTTHUMG00000167871.1 +14738 chr11 HAVANA gene 47589664 47594659 1664.0 - 0 ENSG00000172247.3 protein_coding C1QTNF4 2 OTTHUMG00000166895.1 +14739 chr11 HAVANA gene 47617315 47642623 2897.0 - 0 ENSG00000109919.9 protein_coding MTCH2 2 OTTHUMG00000166926.4 +14740 chr11 HAVANA gene 47659591 47715389 5483.0 - 0 ENSG00000165923.15 protein_coding AGBL2 1 OTTHUMG00000165368.7 +14741 chr11 ENSEMBL gene 47726894 47726992 99.0 - 0 ENSG00000200090.1 misc_RNA RF00019 3 +14742 chr11 HAVANA gene 47716517 47767443 7596.0 - 0 ENSG00000109920.12 protein_coding FNBP4 1 OTTHUMG00000166533.8 ncRNA_host +14743 chr11 HAVANA gene 47796169 47796379 211.0 + 0 ENSG00000271543.1 processed_pseudogene AC021443.1 1 OTTHUMG00000184764.1 pseudo_consens +14744 chr11 ENSEMBL gene 47804296 47804402 107.0 - 0 ENSG00000252941.1 rRNA_pseudogene RNA5SP340 3 +14745 chr11 ENSEMBL gene 47820200 47820289 90.0 - 0 ENSG00000252874.2 misc_RNA RF00019 3 +14746 chr11 HAVANA gene 47841324 47841682 359.0 + 0 ENSG00000271557.1 processed_pseudogene YPEL5P2 1 OTTHUMG00000184763.1 pseudo_consens +14747 chr11 HAVANA gene 47778087 47848555 8576.0 - 0 ENSG00000030066.13 protein_coding NUP160 2 OTTHUMG00000166534.4 ncRNA_host +14748 chr11 HAVANA gene 47905323 47905607 285.0 - 0 ENSG00000254780.1 processed_pseudogene AC023232.1 1 OTTHUMG00000166927.1 pseudo_consens +14749 chr11 HAVANA gene 48014406 48015855 301.0 - 0 ENSG00000254879.1 antisense PTPRJ-AS1 2 OTTHUMG00000166634.1 +14750 chr11 ENSEMBL gene 48096782 48096858 77.0 + 0 ENSG00000263693.1 miRNA MIR3161 3 +14751 chr11 HAVANA gene 47980558 48170841 9620.0 + 0 ENSG00000149177.12 protein_coding PTPRJ 1 OTTHUMG00000166573.3 ncRNA_host +14752 chr11 HAVANA gene 48216810 48217739 930.0 + 0 ENSG00000175619.3 protein_coding OR4B1 2 OTTHUMG00000166576.2 +14753 chr11 HAVANA gene 48227429 48228310 882.0 + 0 ENSG00000255514.1 unprocessed_pseudogene OR4B2P 2 OTTHUMG00000166577.1 +14754 chr11 HAVANA gene 48245056 48246080 1025.0 + 0 ENSG00000172208.6 protein_coding OR4X2 2 OTTHUMG00000165302.2 +14755 chr11 HAVANA gene 48263861 48264778 918.0 + 0 ENSG00000176567.1 protein_coding OR4X1 2 OTTHUMG00000165301.2 +14756 chr11 HAVANA gene 48306223 48307152 930.0 + 0 ENSG00000176555.1 protein_coding OR4S1 2 OTTHUMG00000166578.2 +14757 chr11 HAVANA gene 48324920 48328471 1058.0 + 0 ENSG00000176547.9 protein_coding OR4C3 2 OTTHUMG00000166579.3 +14758 chr11 HAVANA gene 48345351 48352447 931.0 - 0 ENSG00000197161.7 unprocessed_pseudogene OR4C4P 2 OTTHUMG00000169508.1 +14759 chr11 HAVANA gene 48365485 48366465 981.0 - 0 ENSG00000176540.3 protein_coding OR4C5 2 OTTHUMG00000169462.3 +14760 chr11 HAVANA gene 48420210 48421273 1064.0 + 0 ENSG00000182565.8 unprocessed_pseudogene OR4C2P 2 OTTHUMG00000166580.1 +14761 chr11 HAVANA gene 48432217 48433147 931.0 - 0 ENSG00000184789.6 unprocessed_pseudogene OR4C10P 1 OTTHUMG00000154239.1 pseudo_consens +14762 chr11 HAVANA gene 48464053 48464977 925.0 - 0 ENSG00000254925.1 unprocessed_pseudogene OR4C9P 2 OTTHUMG00000166635.1 +14763 chr11 HAVANA gene 48486363 48486825 463.0 - 0 ENSG00000255215.1 unprocessed_pseudogene OR4R1P 2 OTTHUMG00000166636.1 +14764 chr11 HAVANA gene 48488717 48489780 1064.0 + 0 ENSG00000237388.2 protein_coding OR4A47 2 OTTHUMG00000166581.1 +14765 chr11 HAVANA gene 48492026 48492416 391.0 + 0 ENSG00000255113.1 unprocessed_pseudogene OR4A48P 2 OTTHUMG00000166582.1 +14766 chr11 HAVANA gene 48496348 48497280 933.0 + 0 ENSG00000255304.1 unprocessed_pseudogene OR4A46P 2 OTTHUMG00000166583.1 +14767 chr11 HAVANA gene 48512273 48513220 948.0 + 0 ENSG00000254832.1 unprocessed_pseudogene OR4A40P 2 OTTHUMG00000166584.1 +14768 chr11 HAVANA gene 48526064 48526971 908.0 + 0 ENSG00000255534.1 unprocessed_pseudogene OR4A43P 2 OTTHUMG00000166585.1 +14769 chr11 HAVANA gene 48579436 48580336 901.0 + 0 ENSG00000213607.4 unprocessed_pseudogene OR4A45P 2 OTTHUMG00000166604.1 +14770 chr11 HAVANA gene 48589760 48590687 928.0 + 0 ENSG00000255297.1 unprocessed_pseudogene OR4A41P 2 OTTHUMG00000166605.1 +14771 chr11 HAVANA gene 48610063 48611000 938.0 + 0 ENSG00000254674.1 unprocessed_pseudogene OR4A42P 2 OTTHUMG00000166606.1 +14772 chr11 HAVANA gene 48627546 48628493 948.0 + 0 ENSG00000255053.1 unprocessed_pseudogene OR4A44P 2 OTTHUMG00000166607.1 +14773 chr11 HAVANA gene 48880111 48885237 931.0 + 0 ENSG00000255551.1 unprocessed_pseudogene AC027369.6 1 OTTHUMG00000166608.1 pseudo_consens +14774 chr11 HAVANA gene 48893256 48898703 816.0 + 0 ENSG00000254920.1 unprocessed_pseudogene AC027369.4 2 OTTHUMG00000166610.2 +14775 chr11 HAVANA gene 48881723 48902181 3707.0 - 0 ENSG00000254728.1 unprocessed_pseudogene AC027369.3 1 OTTHUMG00000166637.1 pseudo_consens +14776 chr11 HAVANA gene 48907103 48908946 755.0 + 0 ENSG00000255527.1 unprocessed_pseudogene AC027369.5 2 OTTHUMG00000166611.1 +14777 chr11 HAVANA gene 48945694 48951895 1357.0 + 0 ENSG00000249910.3 unprocessed_pseudogene TRIM51CP 2 OTTHUMG00000160550.2 +14778 chr11 HAVANA gene 48959928 48961810 440.0 + 0 ENSG00000254517.1 unprocessed_pseudogene AC027369.2 2 OTTHUMG00000166621.1 +14779 chr11 HAVANA gene 48975324 48983826 1625.0 - 0 ENSG00000220948.5 protein_coding TRIM51GP 2 OTTHUMG00000165215.2 +14780 chr11 HAVANA gene 48985868 48991881 1358.0 - 0 ENSG00000254764.2 unprocessed_pseudogene TRIM53CP 2 OTTHUMG00000166638.2 +14781 chr11 HAVANA gene 49009959 49018589 2242.0 - 0 ENSG00000205044.5 transcribed_unprocessed_pseudogene AC027369.1 2 OTTHUMG00000166698.3 +14782 chr11 HAVANA gene 49027501 49038451 2162.0 + 0 ENSG00000182053.12 protein_coding TRIM49B 2 OTTHUMG00000186986.1 +14783 chr11 HAVANA gene 49053714 49059112 1353.0 - 0 ENSG00000214891.9 protein_coding TRIM64C 2 OTTHUMG00000166752.3 +14784 chr11 HAVANA gene 49067610 49069301 573.0 + 0 ENSG00000276637.1 unprocessed_pseudogene AC084851.3 2 OTTHUMG00000187735.1 +14785 chr11 HAVANA gene 49070752 49071000 249.0 - 0 ENSG00000254801.1 processed_pseudogene AC084851.1 1 OTTHUMG00000166639.1 pseudo_consens +14786 chr11 HAVANA gene 49081907 49083097 1191.0 + 0 ENSG00000229361.5 processed_pseudogene UBTFL7 1 OTTHUMG00000165234.1 pseudo_consens +14787 chr11 HAVANA gene 49092404 49092767 364.0 + 0 ENSG00000255452.1 processed_pseudogene AC084851.2 2 OTTHUMG00000166623.1 +14788 chr11 HAVANA gene 49098163 49101168 3006.0 - 0 ENSG00000254412.1 processed_pseudogene AC118273.1 2 OTTHUMG00000166640.1 +14789 chr11 HAVANA gene 49110756 49111220 465.0 + 0 ENSG00000255338.1 processed_pseudogene AC118273.2 2 OTTHUMG00000166624.1 +14790 chr11 HAVANA gene 49117010 49124570 1353.0 - 0 ENSG00000254993.2 unprocessed_pseudogene TRIM77BP 1 OTTHUMG00000166641.2 pseudo_consens +14791 chr11 HAVANA gene 49133653 49134800 1148.0 - 0 ENSG00000254567.2 processed_pseudogene UBTFL9 1 OTTHUMG00000166642.2 pseudo_consens +14792 chr11 HAVANA gene 49146635 49208670 3824.0 - 0 ENSG00000086205.17 protein_coding FOLH1 2 OTTHUMG00000166625.2 +14793 chr11 HAVANA gene 49305714 49379669 1286.0 + 0 ENSG00000255532.1 transcribed_unprocessed_pseudogene AC118942.1 2 OTTHUMG00000166626.2 +14794 chr11 HAVANA gene 49406190 49406714 525.0 + 0 ENSG00000254496.1 processed_pseudogene CBX3P8 1 OTTHUMG00000166649.1 pseudo_consens +14795 chr11 HAVANA gene 49405091 49415789 441.0 - 0 ENSG00000123447.6 unprocessed_pseudogene TYRL 2 OTTHUMG00000166674.3 +14796 chr11 HAVANA gene 49433480 49434438 959.0 - 0 ENSG00000226268.3 processed_pseudogene AC135977.1 2 OTTHUMG00000166675.3 +14797 chr11 HAVANA gene 49558546 49810419 2366.0 + 0 ENSG00000205035.8 transcribed_unprocessed_pseudogene AC136759.1 2 OTTHUMG00000166650.5 +14798 chr11 HAVANA gene 49817778 49825553 795.0 + 0 ENSG00000254487.2 unprocessed_pseudogene AC130364.1 2 OTTHUMG00000166761.2 +14799 chr11 HAVANA gene 49824839 49826724 604.0 - 0 ENSG00000255268.2 unprocessed_pseudogene AC130364.2 2 OTTHUMG00000166902.2 +14800 chr11 HAVANA gene 49833140 49839320 1353.0 - 0 ENSG00000219061.4 unprocessed_pseudogene TRIM51FP 2 OTTHUMG00000166724.3 +14801 chr11 HAVANA gene 49843488 49846533 1091.0 - 0 ENSG00000265973.1 unprocessed_pseudogene AP006587.6 2 OTTHUMG00000179739.1 +14802 chr11 HAVANA gene 49854080 49859402 739.0 - 0 ENSG00000255550.1 unprocessed_pseudogene AP006587.5 2 OTTHUMG00000166677.2 +14803 chr11 HAVANA gene 49850629 49862528 1502.0 + 0 ENSG00000254714.1 unprocessed_pseudogene AP006587.1 2 OTTHUMG00000166662.2 +14804 chr11 HAVANA gene 49871826 49874067 529.0 - 0 ENSG00000255214.1 unprocessed_pseudogene AP006587.4 2 OTTHUMG00000166678.1 +14805 chr11 HAVANA gene 49874945 49876638 596.0 + 0 ENSG00000255190.2 processed_pseudogene TRIM51DP 2 OTTHUMG00000166679.2 +14806 chr11 HAVANA gene 49882999 49884093 493.0 + 0 ENSG00000254800.2 processed_pseudogene AP006587.2 2 OTTHUMG00000166680.2 +14807 chr11 HAVANA gene 49892262 49893777 1516.0 - 0 ENSG00000255111.1 processed_pseudogene AP006587.3 2 OTTHUMG00000166681.2 +14808 chr11 HAVANA gene 49898267 49899186 920.0 - 0 ENSG00000254408.1 unprocessed_pseudogene OR4A1P 2 OTTHUMG00000166682.1 +14809 chr11 HAVANA gene 49915013 49915644 632.0 - 0 ENSG00000254472.1 unprocessed_pseudogene OR4A49P 2 OTTHUMG00000166755.1 +14810 chr11 HAVANA gene 49917391 49918478 1088.0 - 0 ENSG00000254637.1 unprocessed_pseudogene OR4A18P 2 OTTHUMG00000166756.1 +14811 chr11 HAVANA gene 49920312 49921414 1103.0 - 0 ENSG00000254940.1 unprocessed_pseudogene OR4A19P 2 OTTHUMG00000166757.1 +14812 chr11 HAVANA gene 49923049 49923886 838.0 + 0 ENSG00000254624.1 unprocessed_pseudogene OR4R3P 2 OTTHUMG00000166685.2 +14813 chr11 HAVANA gene 49952391 49953419 1029.0 + 0 ENSG00000258817.1 protein_coding OR4C13 2 OTTHUMG00000166686.1 +14814 chr11 HAVANA gene 49981473 49982535 1063.0 - 0 ENSG00000221954.2 protein_coding OR4C12 2 OTTHUMG00000166687.1 +14815 chr11 HAVANA gene 50018798 50019695 898.0 + 0 ENSG00000283605.1 unprocessed_pseudogene OR4C48P 2 OTTHUMG00000191880.1 +14816 chr11 HAVANA gene 50032874 50033794 921.0 + 0 ENSG00000260811.1 polymorphic_pseudogene OR4C45 2 OTTHUMG00000175623.2 +14817 chr11 HAVANA gene 50053410 50054309 900.0 - 0 ENSG00000260595.1 unprocessed_pseudogene OR4C49P 2 OTTHUMG00000175624.1 +14818 chr11 HAVANA gene 50100892 50102898 420.0 - 0 ENSG00000255199.2 unprocessed_pseudogene GTF2IP11 2 OTTHUMG00000166758.2 +14819 chr11 HAVANA gene 50170156 50190441 962.0 + 0 ENSG00000255442.1 unprocessed_pseudogene AC109635.5 2 OTTHUMG00000166688.1 +14820 chr11 HAVANA gene 50246554 50247761 490.0 - 0 ENSG00000236919.3 unprocessed_pseudogene AC109635.1 2 OTTHUMG00000166903.1 +14821 chr11 HAVANA gene 50268161 50269273 1113.0 + 0 ENSG00000255500.2 processed_pseudogene AC109635.6 1 OTTHUMG00000166689.2 pseudo_consens +14822 chr11 HAVANA gene 50290749 50290933 185.0 + 0 ENSG00000255001.1 processed_pseudogene AC109635.3 2 OTTHUMG00000166691.1 +14823 chr11 HAVANA gene 50279828 50298452 1005.0 - 0 ENSG00000255042.3 transcribed_unprocessed_pseudogene AC109635.4 2 OTTHUMG00000166690.2 +14824 chr11 HAVANA gene 50298579 50304656 724.0 + 0 ENSG00000254518.1 lincRNA AC109635.2 1 OTTHUMG00000166692.1 +14825 chr11 HAVANA gene 50307681 50361706 1562.0 + 0 ENSG00000254840.1 transcribed_unprocessed_pseudogene AC024405.2 2 OTTHUMG00000166693.1 +14826 chr11 HAVANA gene 50409042 50422316 1042.0 + 0 ENSG00000214883.4 unprocessed_pseudogene AC024405.1 2 OTTHUMG00000166694.3 +14827 chr11 HAVANA gene 54591480 54592409 930.0 + 0 ENSG00000237610.1 unprocessed_pseudogene OR4C50P 2 OTTHUMG00000154323.1 +14828 chr11 HAVANA gene 54603069 54603998 930.0 - 0 ENSG00000185926.1 protein_coding OR4C46 2 OTTHUMG00000166705.2 +14829 chr11 HAVANA gene 54635037 54635955 919.0 - 0 ENSG00000255312.1 unprocessed_pseudogene OR4C7P 2 OTTHUMG00000166704.1 +14830 chr11 HAVANA gene 54657120 54657716 597.0 - 0 ENSG00000255560.1 unprocessed_pseudogene OR4R2P 2 OTTHUMG00000166703.1 +14831 chr11 HAVANA gene 54659666 54660595 930.0 + 0 ENSG00000254769.3 unprocessed_pseudogene OR4A4P 2 OTTHUMG00000166768.1 +14832 chr11 HAVANA gene 54662580 54663450 871.0 + 0 ENSG00000254464.1 unprocessed_pseudogene OR4A3P 2 OTTHUMG00000166767.1 +14833 chr11 HAVANA gene 54667298 54668210 913.0 + 0 ENSG00000227547.3 unprocessed_pseudogene OR4A2P 2 OTTHUMG00000166766.1 +14834 chr11 HAVANA gene 54682877 54683821 945.0 + 0 ENSG00000225997.1 polymorphic_pseudogene OR4A8 2 OTTHUMG00000154245.3 +14835 chr11 HAVANA gene 54692450 54693359 910.0 + 0 ENSG00000255349.1 unprocessed_pseudogene OR4A7P 2 OTTHUMG00000166765.1 +14836 chr11 HAVANA gene 54706832 54707902 1071.0 + 0 ENSG00000221840.4 protein_coding OR4A5 2 OTTHUMG00000166764.3 +14837 chr11 HAVANA gene 54724847 54725816 970.0 + 0 ENSG00000255078.1 unprocessed_pseudogene OR4A6P 2 OTTHUMG00000166763.1 +14838 chr11 HAVANA gene 55267408 55267636 229.0 + 0 ENSG00000255543.1 processed_pseudogene AP005597.4 2 OTTHUMG00000166706.1 overlapping_locus +14839 chr11 HAVANA gene 55262182 55271119 1445.0 + 0 ENSG00000150244.11 protein_coding TRIM48 2 OTTHUMG00000157011.1 overlapping_locus +14840 chr11 HAVANA gene 55279949 55280289 341.0 + 0 ENSG00000255110.1 unprocessed_pseudogene AP005597.2 2 OTTHUMG00000167392.1 +14841 chr11 HAVANA gene 55279447 55284749 799.0 - 0 ENSG00000255283.3 unprocessed_pseudogene AP005597.3 2 OTTHUMG00000166769.3 +14842 chr11 HAVANA gene 55291883 55298270 1878.0 - 0 ENSG00000166007.11 transcribed_unprocessed_pseudogene TRIM51HP 1 OTTHUMG00000166775.3 +14843 chr11 HAVANA gene 55302290 55305060 802.0 - 0 ENSG00000254828.1 unprocessed_pseudogene AP005597.1 2 OTTHUMG00000166776.2 +14844 chr11 HAVANA gene 55318560 55319465 906.0 + 0 ENSG00000254663.1 unprocessed_pseudogene OR4A11P 2 OTTHUMG00000166708.1 +14845 chr11 HAVANA gene 55325756 55326673 918.0 + 0 ENSG00000254723.1 unprocessed_pseudogene OR4A12P 2 OTTHUMG00000166709.1 +14846 chr11 HAVANA gene 55343151 55344231 1081.0 + 0 ENSG00000181961.4 protein_coding OR4A16 2 OTTHUMG00000166710.3 +14847 chr11 HAVANA gene 55367884 55368918 1035.0 + 0 ENSG00000181958.4 protein_coding OR4A15 2 OTTHUMG00000166711.3 +14848 chr11 HAVANA gene 55388529 55389472 944.0 + 0 ENSG00000254891.1 unprocessed_pseudogene OR4A9P 2 OTTHUMG00000166712.1 +14849 chr11 HAVANA gene 55411526 55411717 192.0 + 0 ENSG00000255077.1 unprocessed_pseudogene OR4X7P 2 OTTHUMG00000166777.1 +14850 chr11 HAVANA gene 55430478 55432370 928.0 + 0 ENSG00000255493.2 unprocessed_pseudogene OR4A10P 2 OTTHUMG00000166778.2 +14851 chr11 HAVANA gene 55444435 55445338 904.0 + 0 ENSG00000255196.1 unprocessed_pseudogene OR4A17P 2 OTTHUMG00000166779.1 +14852 chr11 HAVANA gene 55466771 55467712 942.0 + 0 ENSG00000181950.3 unprocessed_pseudogene OR4A13P 2 OTTHUMG00000166780.1 +14853 chr11 HAVANA gene 55475943 55478512 908.0 + 0 ENSG00000255294.2 unprocessed_pseudogene OR4A50P 2 OTTHUMG00000166781.2 +14854 chr11 HAVANA gene 55491205 55492148 944.0 + 0 ENSG00000181943.5 unprocessed_pseudogene OR4A21P 2 OTTHUMG00000167393.2 +14855 chr11 HAVANA gene 55506635 55511169 1569.0 + 0 ENSG00000254576.2 transcribed_unprocessed_pseudogene OR4C1P 2 OTTHUMG00000166713.3 +14856 chr11 HAVANA gene 55537002 55537924 923.0 + 0 ENSG00000233301.1 unprocessed_pseudogene OR4C14P 2 OTTHUMG00000154243.1 +14857 chr11 HAVANA gene 55554307 55555419 1113.0 + 0 ENSG00000181939.3 protein_coding OR4C15 2 OTTHUMG00000166714.4 +14858 chr11 HAVANA gene 55572128 55573060 933.0 + 0 ENSG00000279514.2 protein_coding OR4C16 2 OTTHUMG00000165198.2 +14859 chr11 HAVANA gene 55602360 55607645 2737.0 - 0 ENSG00000172188.5 protein_coding OR4C11 2 OTTHUMG00000165290.11 +14860 chr11 HAVANA gene 55635113 55640309 2086.0 + 0 ENSG00000181927.3 protein_coding OR4P4 2 OTTHUMG00000165300.3 +14861 chr11 HAVANA gene 55648327 55652854 2211.0 + 0 ENSG00000174982.3 protein_coding OR4S2 2 OTTHUMG00000166799.3 +14862 chr11 HAVANA gene 55662201 55666195 1119.0 + 0 ENSG00000181903.5 protein_coding OR4C6 2 OTTHUMG00000166800.3 +14863 chr11 HAVANA gene 55673536 55674675 1140.0 + 0 ENSG00000254841.1 unprocessed_pseudogene OR4V1P 2 OTTHUMG00000166801.1 +14864 chr11 HAVANA gene 55683239 55684374 1136.0 + 0 ENSG00000188439.3 unprocessed_pseudogene OR4P1P 2 OTTHUMG00000166802.1 +14865 chr11 HAVANA gene 55684141 55686160 345.0 - 0 ENSG00000254804.1 lincRNA AP006437.1 2 OTTHUMG00000166803.1 +14866 chr11 HAVANA gene 55714799 55715727 929.0 + 0 ENSG00000254457.3 unprocessed_pseudogene OR5D2P 2 OTTHUMG00000166804.3 +14867 chr11 HAVANA gene 55723776 55729621 3685.0 + 0 ENSG00000186886.8 protein_coding OR5D3P 2 OTTHUMG00000166805.4 +14868 chr11 HAVANA gene 55754977 55755957 981.0 + 0 ENSG00000181837.7 unprocessed_pseudogene OR5D17P 2 OTTHUMG00000166806.2 +14869 chr11 HAVANA gene 55773438 55774382 945.0 + 0 ENSG00000279761.2 protein_coding OR5D13 2 OTTHUMG00000166807.2 +14870 chr11 HAVANA gene 55786964 55787905 942.0 + 0 ENSG00000255019.1 unprocessed_pseudogene OR5D15P 2 OTTHUMG00000166808.1 +14871 chr11 HAVANA gene 55795556 55796500 945.0 + 0 ENSG00000186113.1 protein_coding OR5D14 2 OTTHUMG00000166809.2 +14872 chr11 HAVANA gene 55811367 55812476 1110.0 + 0 ENSG00000279395.3 protein_coding OR5L1 2 OTTHUMG00000166810.3 +14873 chr11 HAVANA gene 55819607 55820597 991.0 + 0 ENSG00000186119.8 protein_coding OR5D18 2 OTTHUMG00000166811.3 +14874 chr11 HAVANA gene 55827219 55828154 936.0 + 0 ENSG00000205030.1 protein_coding OR5L2 2 OTTHUMG00000166812.2 +14875 chr11 HAVANA gene 55838752 55839738 987.0 + 0 ENSG00000205029.1 protein_coding OR5D16 2 OTTHUMG00000154233.2 +14876 chr11 HAVANA gene 55850347 55858547 3163.0 + 0 ENSG00000186124.4 transcribed_unprocessed_pseudogene OR9M1P 2 OTTHUMG00000154234.2 +14877 chr11 HAVANA gene 55865709 55865820 112.0 + 0 ENSG00000255499.1 processed_pseudogene AC036111.3 2 OTTHUMG00000166814.1 overlapping_locus +14878 chr11 HAVANA gene 55867569 55874537 1582.0 - 0 ENSG00000254547.1 unprocessed_pseudogene AC036111.1 1 OTTHUMG00000166816.2 pseudo_consens +14879 chr11 HAVANA gene 55863932 55881243 901.0 + 0 ENSG00000255204.1 unprocessed_pseudogene AC036111.2 2 OTTHUMG00000166813.2 overlapping_locus +14880 chr11 HAVANA gene 55883297 55891810 1832.0 + 0 ENSG00000124900.12 protein_coding TRIM51 1 OTTHUMG00000156437.3 +14881 chr11 HAVANA gene 55903341 55904278 938.0 - 0 ENSG00000227806.1 unprocessed_pseudogene OR5W1P 2 OTTHUMG00000154235.1 +14882 chr11 HAVANA gene 55913650 55914582 933.0 - 0 ENSG00000187612.1 protein_coding OR5W2 2 OTTHUMG00000166818.2 +14883 chr11 HAVANA gene 55935456 55936400 945.0 - 0 ENSG00000167825.3 protein_coding OR5I1 2 OTTHUMG00000166821.2 +14884 chr11 HAVANA gene 55948120 55948924 805.0 - 0 ENSG00000255416.1 unprocessed_pseudogene OR10AF1P 2 OTTHUMG00000166822.1 +14885 chr11 HAVANA gene 55957216 55957630 415.0 - 0 ENSG00000254807.1 unprocessed_pseudogene OR10AK1P 2 OTTHUMG00000166823.1 +14886 chr11 HAVANA gene 55965755 55969945 2814.0 - 0 ENSG00000174970.5 protein_coding OR10AG1 2 OTTHUMG00000166824.4 +14887 chr11 HAVANA gene 55979398 55980103 706.0 - 0 ENSG00000214880.3 unprocessed_pseudogene OR7E5P 1 OTTHUMG00000166911.1 pseudo_consens +14888 chr11 HAVANA gene 55993681 55994625 945.0 - 0 ENSG00000149133.1 protein_coding OR5F1 2 OTTHUMG00000166825.2 +14889 chr11 HAVANA gene 56015017 56015957 941.0 - 0 ENSG00000182365.4 unprocessed_pseudogene OR5F2P 2 OTTHUMG00000166837.1 +14890 chr11 HAVANA gene 56027654 56038191 7860.0 + 0 ENSG00000181785.2 protein_coding OR5AS1 2 OTTHUMG00000166830.3 +14891 chr11 HAVANA gene 56049785 56055730 1534.0 + 0 ENSG00000184741.6 transcribed_unprocessed_pseudogene OR5AQ1P 2 OTTHUMG00000166838.2 +14892 chr11 HAVANA gene 56071111 56072049 939.0 + 0 ENSG00000181780.4 unprocessed_pseudogene OR5J1P 2 OTTHUMG00000154228.1 +14893 chr11 HAVANA gene 56082801 56084840 1176.0 + 0 ENSG00000225538.2 transcribed_unprocessed_pseudogene OR5BE1P 2 OTTHUMG00000154221.2 +14894 chr11 HAVANA gene 56093277 56094286 1010.0 + 0 ENSG00000172154.10 protein_coding OR8I2 2 OTTHUMG00000166831.4 +14895 chr11 HAVANA gene 56097244 56097384 141.0 - 0 ENSG00000254524.1 unprocessed_pseudogene OR8I4P 2 OTTHUMG00000166839.1 +14896 chr11 HAVANA gene 56103687 56107658 3092.0 + 0 ENSG00000181767.3 protein_coding OR8H2 2 OTTHUMG00000166832.3 +14897 chr11 HAVANA gene 56116639 56117256 618.0 - 0 ENSG00000255140.1 unprocessed_pseudogene OR5BN2P 2 OTTHUMG00000166840.1 +14898 chr11 HAVANA gene 56122373 56123311 939.0 + 0 ENSG00000181761.5 protein_coding OR8H3 2 OTTHUMG00000166833.2 +14899 chr11 HAVANA gene 56132666 56133494 829.0 - 0 ENSG00000254848.1 unprocessed_pseudogene OR5BN1P 2 OTTHUMG00000166841.1 +14900 chr11 HAVANA gene 56134721 56140201 3806.0 - 0 ENSG00000167822.2 protein_coding OR8J3 2 OTTHUMG00000166834.3 +14901 chr11 HAVANA gene 56142516 56143387 872.0 - 0 ENSG00000254947.1 unprocessed_pseudogene OR8K4P 2 OTTHUMG00000166842.1 +14902 chr11 HAVANA gene 56159394 56160317 924.0 - 0 ENSG00000181752.3 protein_coding OR8K5 2 OTTHUMG00000166820.3 +14903 chr11 HAVANA gene 56165500 56165921 422.0 + 0 ENSG00000255217.1 unprocessed_pseudogene OR5J7P 2 OTTHUMG00000166843.1 +14904 chr11 HAVANA gene 56176618 56177556 939.0 + 0 ENSG00000174957.1 protein_coding OR5J2 2 OTTHUMG00000166835.2 +14905 chr11 HAVANA gene 56188379 56189251 873.0 - 0 ENSG00000230213.1 unprocessed_pseudogene OR8V1P 2 OTTHUMG00000154220.1 +14906 chr11 HAVANA gene 56205125 56205625 501.0 - 0 ENSG00000213604.4 processed_pseudogene AC022882.1 1 OTTHUMG00000166849.1 pseudo_consens +14907 chr11 HAVANA gene 56208985 56215222 2883.0 - 0 ENSG00000254658.3 polymorphic_pseudogene OR8J2 2 OTTHUMG00000166850.5 +14908 chr11 HAVANA gene 56231282 56234255 2062.0 - 0 ENSG00000181718.6 protein_coding OR5T2 2 OTTHUMG00000166851.3 +14909 chr11 HAVANA gene 56252200 56253222 1023.0 + 0 ENSG00000172489.6 protein_coding OR5T3 2 OTTHUMG00000166852.3 +14910 chr11 HAVANA gene 56274154 56276819 1471.0 + 0 ENSG00000181698.4 protein_coding OR5T1 2 OTTHUMG00000166853.4 +14911 chr11 HAVANA gene 56288462 56292254 2933.0 - 0 ENSG00000181693.8 protein_coding OR8H1 2 OTTHUMG00000162671.2 +14912 chr11 HAVANA gene 56296541 56297471 931.0 - 0 ENSG00000255461.1 unprocessed_pseudogene OR8I1P 2 OTTHUMG00000166854.1 +14913 chr11 HAVANA gene 56315144 56320639 2438.0 + 0 ENSG00000280314.3 protein_coding OR8K3 2 OTTHUMG00000166855.3 +14914 chr11 HAVANA gene 56331347 56332488 1142.0 - 0 ENSG00000254722.1 unprocessed_pseudogene FAM8A2P 1 OTTHUMG00000166856.1 pseudo_consens +14915 chr11 HAVANA gene 56335142 56336068 927.0 + 0 ENSG00000255134.1 unprocessed_pseudogene OR8K2P 2 OTTHUMG00000166857.1 +14916 chr11 HAVANA gene 56345945 56347031 1087.0 + 0 ENSG00000150261.4 protein_coding OR8K1 2 OTTHUMG00000166858.3 +14917 chr11 HAVANA gene 56357328 56358221 894.0 + 0 ENSG00000242208.1 processed_pseudogene RPL5P29 1 OTTHUMG00000158391.1 pseudo_consens +14918 chr11 HAVANA gene 56354291 56361511 1332.0 + 0 ENSG00000172487.4 protein_coding OR8J1 2 OTTHUMG00000166859.3 +14919 chr11 HAVANA gene 56375624 56376553 930.0 + 0 ENSG00000172199.1 protein_coding OR8U1 2 OTTHUMG00000166860.2 +14920 chr11 HAVANA gene 56381635 56382589 955.0 + 0 ENSG00000254903.1 unprocessed_pseudogene OR8L1P 2 OTTHUMG00000166871.1 +14921 chr11 HAVANA gene 56393729 56394648 920.0 + 0 ENSG00000255466.1 unprocessed_pseudogene OR5AL2P 2 OTTHUMG00000166872.1 +14922 chr11 HAVANA gene 56412696 56413680 985.0 + 0 ENSG00000272987.1 polymorphic_pseudogene OR5AL1 2 OTTHUMG00000154218.3 +14923 chr11 HAVANA gene 56417258 56418232 975.0 - 0 ENSG00000279961.2 protein_coding OR5R1 2 OTTHUMG00000154219.2 +14924 chr11 HAVANA gene 56448668 56449592 925.0 + 0 ENSG00000230416.3 unprocessed_pseudogene OR5M4P 2 OTTHUMG00000166873.1 +14925 chr11 HAVANA gene 56462469 56463401 933.0 - 0 ENSG00000150269.1 protein_coding OR5M9 2 OTTHUMG00000166874.4 overlapping_locus +14926 chr11 HAVANA gene 56459221 56473352 4672.0 - 0 ENSG00000284732.1 protein_coding AP002512.3 2 OTTHUMG00000192299.1 overlapping_locus +14927 chr11 HAVANA gene 56469274 56473352 1400.0 - 0 ENSG00000174937.4 protein_coding OR5M3 2 OTTHUMG00000166875.3 overlapping_locus +14928 chr11 HAVANA gene 56476287 56484839 4242.0 - 0 ENSG00000254752.2 transcribed_unprocessed_pseudogene OR5M2P 2 OTTHUMG00000166876.2 +14929 chr11 HAVANA gene 56490349 56491395 1047.0 - 0 ENSG00000181371.4 protein_coding OR5M8 2 OTTHUMG00000166877.3 +14930 chr11 HAVANA gene 56495760 56496412 653.0 + 0 ENSG00000254411.1 processed_pseudogene AP002512.1 1 OTTHUMG00000166878.1 pseudo_consens +14931 chr11 HAVANA gene 56500300 56501271 972.0 - 0 ENSG00000254490.1 unprocessed_pseudogene OR5M7P 2 OTTHUMG00000166879.1 +14932 chr11 HAVANA gene 56509573 56510195 623.0 + 0 ENSG00000254660.1 processed_pseudogene AP002512.2 1 OTTHUMG00000166880.1 pseudo_consens +14933 chr11 HAVANA gene 56512235 56513171 937.0 - 0 ENSG00000254603.1 unprocessed_pseudogene OR5M6P 2 OTTHUMG00000166881.1 +14934 chr11 HAVANA gene 56526568 56527503 936.0 - 0 ENSG00000185701.7 unprocessed_pseudogene OR5M5P 2 OTTHUMG00000166882.2 +14935 chr11 HAVANA gene 56542262 56543281 1020.0 - 0 ENSG00000255223.4 protein_coding OR5M11 2 OTTHUMG00000166861.3 +14936 chr11 HAVANA gene 56576736 56577787 1052.0 - 0 ENSG00000254834.4 protein_coding OR5M10 2 OTTHUMG00000166862.3 +14937 chr11 HAVANA gene 56597426 56598362 937.0 - 0 ENSG00000166693.7 unprocessed_pseudogene OR5M13P 2 OTTHUMG00000154216.1 +14938 chr11 HAVANA gene 56609236 56614874 4302.0 - 0 ENSG00000255012.2 protein_coding OR5M1 2 OTTHUMG00000166863.3 +14939 chr11 HAVANA gene 56619779 56620810 1032.0 - 0 ENSG00000255172.2 unprocessed_pseudogene OR5AM1P 2 OTTHUMG00000186005.1 +14940 chr11 HAVANA gene 56628932 56629860 929.0 + 0 ENSG00000197866.3 unprocessed_pseudogene OR5M12P 2 OTTHUMG00000154214.2 +14941 chr11 HAVANA gene 56633164 56634103 940.0 - 0 ENSG00000254795.1 unprocessed_pseudogene OR5AP1P 2 OTTHUMG00000166864.1 +14942 chr11 HAVANA gene 56641466 56642471 1006.0 - 0 ENSG00000172464.3 protein_coding OR5AP2 2 OTTHUMG00000166865.3 +14943 chr11 HAVANA gene 56663662 56664687 1026.0 + 0 ENSG00000172459.4 protein_coding OR5AR1 2 OTTHUMG00000154213.3 +14944 chr11 HAVANA gene 56667545 56674664 2744.0 - 0 ENSG00000232511.4 transcribed_unprocessed_pseudogene OR2AH1P 2 OTTHUMG00000154208.2 +14945 chr11 HAVANA gene 56690465 56690723 259.0 + 0 ENSG00000238041.3 processed_pseudogene AP004245.1 1 OTTHUMG00000167111.1 pseudo_consens +14946 chr11 HAVANA gene 56699095 56703884 3611.0 + 0 ENSG00000174914.2 protein_coding OR9G1 2 OTTHUMG00000167112.3 +14947 chr11 HAVANA gene 56736316 56736462 147.0 - 0 ENSG00000254953.1 processed_pseudogene AP001803.1 1 OTTHUMG00000166930.1 pseudo_consens +14948 chr11 HAVANA gene 56740179 56741096 918.0 + 0 ENSG00000181325.7 unprocessed_pseudogene OR9G3P 2 OTTHUMG00000166931.1 +14949 chr11 ENSEMBL gene 56743873 56743981 109.0 + 0 ENSG00000274770.1 miRNA MIR6128 3 +14950 chr11 HAVANA gene 56741223 56748697 2631.0 - 0 ENSG00000172457.6 protein_coding OR9G4 2 OTTHUMG00000166932.3 +14951 chr11 HAVANA gene 56751023 56751902 880.0 - 0 ENSG00000254825.1 unprocessed_pseudogene OR9G2P 2 OTTHUMG00000166933.1 +14952 chr11 HAVANA gene 56775261 56776206 946.0 - 0 ENSG00000181296.3 unprocessed_pseudogene OR5G1P 2 OTTHUMG00000167016.1 +14953 chr11 HAVANA gene 56790206 56790965 760.0 - 0 ENSG00000255485.1 unprocessed_pseudogene OR5G4P 2 OTTHUMG00000167017.1 +14954 chr11 HAVANA gene 56801856 56820422 1403.0 - 0 ENSG00000205025.8 transcribed_unprocessed_pseudogene OR5G5P 2 OTTHUMG00000154297.3 overlapping_locus +14955 chr11 HAVANA gene 56819573 56820516 944.0 - 0 ENSG00000241356.2 polymorphic_pseudogene OR5G3 2 OTTHUMG00000154395.4 overlapping_locus +14956 chr11 HAVANA gene 56848478 56878078 2901.0 + 0 ENSG00000255433.5 lincRNA AP001803.2 2 OTTHUMG00000166934.3 +14957 chr11 HAVANA gene 56890613 56927885 1446.0 + 0 ENSG00000274150.1 unprocessed_pseudogene FADS2P1 2 OTTHUMG00000187766.1 +14958 chr11 HAVANA gene 56970850 56972146 1297.0 + 0 ENSG00000181282.4 unprocessed_pseudogene OR5AK3P 2 OTTHUMG00000167018.1 +14959 chr11 HAVANA gene 56988872 56989867 996.0 + 0 ENSG00000181273.2 protein_coding OR5AK2 2 OTTHUMG00000167019.1 +14960 chr11 HAVANA gene 57018100 57019021 922.0 + 0 ENSG00000255083.2 unprocessed_pseudogene OR5AK1P 2 OTTHUMG00000167020.2 +14961 chr11 HAVANA gene 57029408 57029722 315.0 + 0 ENSG00000273228.1 unprocessed_pseudogene OR5BQ1P 2 OTTHUMG00000186006.1 +14962 chr11 HAVANA gene 57037534 57038436 903.0 + 0 ENSG00000283307.1 unprocessed_pseudogene OR5AK4P 2 OTTHUMG00000154396.2 +14963 chr11 HAVANA gene 57045091 57045390 300.0 + 0 ENSG00000272676.1 unprocessed_pseudogene OR5AO1P 2 OTTHUMG00000186007.1 +14964 chr11 HAVANA gene 57055587 57056132 546.0 + 0 ENSG00000273255.1 unprocessed_pseudogene OR5BP1P 2 OTTHUMG00000186008.1 +14965 chr11 HAVANA gene 57181747 57191717 5410.0 + 0 ENSG00000183908.5 protein_coding LRRC55 2 OTTHUMG00000159309.2 +14966 chr11 HAVANA gene 57233577 57237314 3738.0 - 0 ENSG00000134817.10 protein_coding APLNR 2 OTTHUMG00000167021.2 +14967 chr11 HAVANA gene 57299638 57324952 7149.0 - 0 ENSG00000149115.13 protein_coding TNKS1BP1 2 OTTHUMG00000167022.4 +14968 chr11 HAVANA gene 57325603 57327958 311.0 + 0 ENSG00000254662.1 antisense AP000781.1 2 OTTHUMG00000167023.1 +14969 chr11 HAVANA gene 57325985 57335877 6323.0 - 0 ENSG00000149136.8 protein_coding SSRP1 1 OTTHUMG00000167024.4 +14970 chr11 HAVANA gene 57338374 57370600 2614.0 + 0 ENSG00000109991.8 protein_coding P2RX3 2 OTTHUMG00000167025.1 +14971 chr11 HAVANA gene 57376769 57381150 869.0 - 0 ENSG00000156575.2 protein_coding PRG3 2 OTTHUMG00000167026.1 +14972 chr11 HAVANA gene 57386794 57390657 1838.0 - 0 ENSG00000186652.9 protein_coding PRG2 2 OTTHUMG00000167027.2 overlapping_locus +14973 chr11 HAVANA gene 57387365 57424059 2242.0 - 0 ENSG00000254979.5 protein_coding AP000781.2 1 OTTHUMG00000167079.5 overlapping_locus +14974 chr11 HAVANA gene 57406954 57427580 4517.0 - 0 ENSG00000134802.17 protein_coding SLC43A3 2 OTTHUMG00000167113.3 overlapping_locus +14975 chr11 ENSEMBL gene 57450183 57450299 117.0 + 0 ENSG00000252070.1 rRNA_pseudogene RNA5SP341 3 +14976 chr11 ENSEMBL gene 57451690 57452022 333.0 + 0 ENSG00000222998.1 misc_RNA RN7SKP259 3 +14977 chr11 HAVANA gene 57460549 57477534 2387.0 + 0 ENSG00000186907.7 protein_coding RTN4RL2 1 OTTHUMG00000167028.2 +14978 chr11 HAVANA gene 57476493 57477534 684.0 - 0 ENSG00000255301.1 antisense AP002893.1 2 OTTHUMG00000167029.1 +14979 chr11 HAVANA gene 57484534 57515786 3532.0 - 0 ENSG00000149150.8 protein_coding SLC43A1 1 OTTHUMG00000167030.3 +14980 chr11 ENSEMBL gene 57528085 57528365 281.0 - 0 ENSG00000265566.2 misc_RNA RN7SL605P 3 +14981 chr11 HAVANA gene 57528463 57530803 777.0 - 0 ENSG00000134809.8 protein_coding TIMM10 2 OTTHUMG00000167039.1 +14982 chr11 HAVANA gene 57542641 57550274 1649.0 + 0 ENSG00000214872.8 protein_coding SMTNL1 2 OTTHUMG00000167046.2 +14983 chr11 HAVANA gene 57551656 57568284 2197.0 - 0 ENSG00000156587.15 protein_coding UBE2L6 1 OTTHUMG00000167047.2 +14984 chr11 HAVANA gene 57576292 57577080 789.0 - 0 ENSG00000240371.1 processed_pseudogene RPS4XP13 1 OTTHUMG00000158394.1 pseudo_consens +14985 chr11 HAVANA gene 57597387 57614853 3603.0 + 0 ENSG00000149131.15 protein_coding SERPING1 1 OTTHUMG00000150304.3 +14986 chr11 ENSEMBL gene 57641198 57641286 89.0 + 0 ENSG00000208009.1 miRNA MIR130A 3 +14987 chr11 HAVANA gene 57645087 57649944 4460.0 - 0 ENSG00000166793.10 protein_coding YPEL4 2 OTTHUMG00000167138.4 +14988 chr11 HAVANA gene 57638024 57652790 3223.0 + 0 ENSG00000254602.1 sense_overlapping AP000662.1 2 OTTHUMG00000167137.1 ncRNA_host,overlapping_locus +14989 chr11 HAVANA gene 57648992 57661868 2793.0 + 0 ENSG00000172409.5 protein_coding CLP1 1 OTTHUMG00000167146.5 overlapping_locus +14990 chr11 HAVANA gene 57667747 57701187 5429.0 + 0 ENSG00000156599.10 protein_coding ZDHHC5 1 OTTHUMG00000167198.2 +14991 chr11 HAVANA gene 57703714 57712323 1877.0 - 0 ENSG00000156603.17 protein_coding MED19 2 OTTHUMG00000167199.4 +14992 chr11 HAVANA gene 57718044 57718530 487.0 - 0 ENSG00000213592.4 processed_pseudogene PPIAP42 1 OTTHUMG00000167201.1 pseudo_consens +14993 chr11 HAVANA gene 57712600 57740973 2246.0 + 0 ENSG00000213593.9 protein_coding TMX2 2 OTTHUMG00000167200.2 overlapping_locus +14994 chr11 HAVANA gene 57741250 57743554 2305.0 + 0 ENSG00000211450.9 protein_coding SELENOH 2 OTTHUMG00000167202.6 overlapping_locus +14995 chr11 HAVANA gene 57743514 57751781 3188.0 - 0 ENSG00000233436.7 protein_coding BTBD18 2 OTTHUMG00000167203.3 +14996 chr11 HAVANA gene 57712605 57791586 585.0 + 0 ENSG00000254462.1 protein_coding TMX2-CTNND1 2 OTTHUMG00000167384.1 overlapping_locus +14997 chr11 HAVANA gene 57742163 57793243 580.0 + 0 ENSG00000254732.1 protein_coding AP001931.1 2 OTTHUMG00000167374.1 overlapping_locus +14998 chr11 HAVANA gene 57753243 57819546 8798.0 + 0 ENSG00000198561.13 protein_coding CTNND1 1 OTTHUMG00000167272.5 overlapping_locus +14999 chr11 HAVANA gene 57870322 57870571 250.0 - 0 ENSG00000255266.1 processed_pseudogene AP003484.1 1 OTTHUMG00000167386.1 pseudo_consens +15000 chr11 HAVANA gene 57861948 57873588 5485.0 - 0 ENSG00000255303.2 transcribed_unprocessed_pseudogene OR5BA1P 1 OTTHUMG00000167385.2 pseudo_consens +15001 chr11 HAVANA gene 57917297 57918239 943.0 - 0 ENSG00000180714.3 unprocessed_pseudogene OR5AZ1P 2 OTTHUMG00000167564.1 +15002 chr11 HAVANA gene 57945598 57946414 817.0 - 0 ENSG00000254749.1 unprocessed_pseudogene OR5BD1P 2 OTTHUMG00000167565.1 +15003 chr11 HAVANA gene 58005386 58005705 320.0 + 0 ENSG00000254601.1 processed_pseudogene CYCSP26 1 OTTHUMG00000167387.1 pseudo_consens +15004 chr11 ENSEMBL gene 58026706 58026812 107.0 - 0 ENSG00000200817.1 snRNA RNU6-899P 3 +15005 chr11 HAVANA gene 58030930 58031931 1002.0 + 0 ENSG00000279051.4 protein_coding OR6Q1 2 OTTHUMG00000168831.1 +15006 chr11 HAVANA gene 58040708 58041660 953.0 - 0 ENSG00000236541.1 unitary_pseudogene VN2R9P 2 OTTHUMG00000154508.1 +15007 chr11 HAVANA gene 58044110 58060138 1890.0 - 0 ENSG00000255146.1 lincRNA AP004247.2 2 OTTHUMG00000167391.1 +15008 chr11 HAVANA gene 58072378 58075438 1289.0 - 0 ENSG00000254853.1 processed_pseudogene AP004247.1 1 OTTHUMG00000167402.1 pseudo_consens +15009 chr11 HAVANA gene 58077348 58078603 933.0 - 0 ENSG00000255131.2 unprocessed_pseudogene OR9L1P 2 OTTHUMG00000167403.2 +15010 chr11 HAVANA gene 58108720 58109661 942.0 - 0 ENSG00000272685.1 unprocessed_pseudogene OR9I3P 2 OTTHUMG00000186071.1 +15011 chr11 HAVANA gene 58116742 58125530 3184.0 - 0 ENSG00000172377.2 protein_coding OR9I1 2 OTTHUMG00000167404.4 +15012 chr11 HAVANA gene 58144495 58145397 903.0 + 0 ENSG00000186508.4 unprocessed_pseudogene OR9I2P 2 OTTHUMG00000154293.1 +15013 chr11 HAVANA gene 58171098 58171721 624.0 + 0 ENSG00000272569.1 unprocessed_pseudogene OR5BL1P 2 OTTHUMG00000186072.1 +15014 chr11 HAVANA gene 58023881 58181616 2488.0 + 0 ENSG00000186509.4 protein_coding OR9Q1 2 OTTHUMG00000167413.2 +15015 chr11 HAVANA gene 58189070 58194053 3774.0 + 0 ENSG00000186513.3 protein_coding OR9Q2 2 OTTHUMG00000167414.2 +15016 chr11 HAVANA gene 58203202 58204181 980.0 - 0 ENSG00000197887.4 protein_coding OR1S2 2 OTTHUMG00000167541.2 +15017 chr11 HAVANA gene 58212720 58216084 1474.0 + 0 ENSG00000280204.3 protein_coding OR1S1 2 OTTHUMG00000167463.2 +15018 chr11 HAVANA gene 58227882 58228918 1037.0 - 0 ENSG00000180475.4 protein_coding OR10Q1 2 OTTHUMG00000167542.1 +15019 chr11 HAVANA gene 58242043 58243097 1055.0 - 0 ENSG00000254589.1 processed_pseudogene EIF4A2P3 1 OTTHUMG00000167464.1 pseudo_consens +15020 chr11 HAVANA gene 58266792 58268260 1469.0 - 0 ENSG00000172772.3 protein_coding OR10W1 2 OTTHUMG00000167462.1 +15021 chr11 HAVANA gene 58291826 58292765 940.0 - 0 ENSG00000272900.1 unprocessed_pseudogene OR10Q2P 2 OTTHUMG00000186073.1 +15022 chr11 HAVANA gene 58317637 58318375 739.0 - 0 ENSG00000255218.1 unprocessed_pseudogene OR5BC1P 2 OTTHUMG00000167552.1 +15023 chr11 HAVANA gene 58343737 58344664 928.0 - 0 ENSG00000255431.1 unprocessed_pseudogene OR5B19P 2 OTTHUMG00000167553.1 +15024 chr11 HAVANA gene 58348989 58349630 642.0 - 0 ENSG00000255096.2 unprocessed_pseudogene OR5B10P 2 OTTHUMG00000167554.2 +15025 chr11 HAVANA gene 58354004 58354499 496.0 - 0 ENSG00000255333.1 processed_pseudogene AP000435.1 1 OTTHUMG00000167555.1 pseudo_consens +15026 chr11 HAVANA gene 58358124 58359069 946.0 - 0 ENSG00000197786.3 protein_coding OR5B17 2 OTTHUMG00000167465.2 +15027 chr11 HAVANA gene 58365836 58366763 928.0 - 0 ENSG00000233499.1 unprocessed_pseudogene OR5B1P 2 OTTHUMG00000154286.1 +15028 chr11 HAVANA gene 58387583 58388486 904.0 - 0 ENSG00000273408.1 unprocessed_pseudogene OR5B15P 2 OTTHUMG00000186074.1 +15029 chr11 HAVANA gene 58402464 58406874 1046.0 - 0 ENSG00000172769.3 protein_coding OR5B3 2 OTTHUMG00000167516.2 +15030 chr11 HAVANA gene 58421264 58428121 2208.0 - 0 ENSG00000172365.3 protein_coding OR5B2 2 OTTHUMG00000167517.3 +15031 chr11 HAVANA gene 58439077 58442758 1810.0 - 0 ENSG00000172362.3 protein_coding OR5B12 2 OTTHUMG00000167543.2 +15032 chr11 HAVANA gene 58491773 58493480 1526.0 - 0 ENSG00000285895.1 lincRNA AP003557.2 2 OTTHUMG00000192758.2 +15033 chr11 HAVANA gene 58497888 58505758 1002.0 - 0 ENSG00000255299.5 lincRNA AP003557.1 2 OTTHUMG00000167518.1 +15034 chr11 HAVANA gene 58507175 58508105 931.0 - 0 ENSG00000198283.2 protein_coding OR5B21 2 OTTHUMG00000167519.1 +15035 chr11 HAVANA gene 58526871 58578220 2467.0 - 0 ENSG00000110031.12 protein_coding LPXN 1 OTTHUMG00000167466.3 +15036 chr11 HAVANA gene 58611119 58612642 1524.0 - 0 ENSG00000269570.2 antisense AP001350.1 2 OTTHUMG00000187460.1 +15037 chr11 HAVANA gene 58579111 58621042 5220.0 + 0 ENSG00000186660.14 protein_coding ZFP91 2 OTTHUMG00000137391.4 overlapping_locus +15038 chr11 HAVANA gene 58579172 58624639 2417.0 + 0 ENSG00000255073.8 protein_coding ZFP91-CNTF 2 OTTHUMG00000166280.2 overlapping_locus +15039 chr11 HAVANA gene 58622673 58625733 1894.0 + 0 ENSG00000242689.2 protein_coding CNTF 2 OTTHUMG00000137476.2 overlapping_locus +15040 chr11 HAVANA gene 58627435 58628528 1094.0 + 0 ENSG00000280010.1 TEC AP001350.2 2 OTTHUMG00000173023.1 +15041 chr11 HAVANA gene 58685086 58691861 741.0 + 0 ENSG00000197254.4 processed_pseudogene AP000445.1 2 OTTHUMG00000167219.2 +15042 chr11 HAVANA gene 58640426 58731974 3114.0 - 0 ENSG00000149124.10 protein_coding GLYAT 1 OTTHUMG00000167429.2 +15043 chr11 HAVANA gene 58748999 58761053 783.0 - 0 ENSG00000254926.1 unprocessed_pseudogene AP000445.2 2 OTTHUMG00000167430.2 +15044 chr11 HAVANA gene 58796237 58796854 618.0 - 0 ENSG00000255265.1 processed_pseudogene TMA16P1 1 OTTHUMG00000167431.1 pseudo_consens +15045 chr11 HAVANA gene 58878302 58893460 1161.0 + 0 ENSG00000254717.2 transcribed_unprocessed_pseudogene GLYATL1P2 2 OTTHUMG00000167220.2 +15046 chr11 HAVANA gene 58834065 58904215 1838.0 - 0 ENSG00000156689.6 protein_coding GLYATL2 2 OTTHUMG00000167432.2 +15047 chr11 HAVANA gene 58917015 58928689 643.0 - 0 ENSG00000255523.1 antisense AP001652.1 1 OTTHUMG00000167433.1 +15048 chr11 HAVANA gene 58967596 58968291 696.0 - 0 ENSG00000254877.1 processed_pseudogene AP001636.2 1 OTTHUMG00000167274.1 pseudo_consens,overlapping_locus +15049 chr11 HAVANA gene 58978787 58994120 1607.0 + 0 ENSG00000255189.1 unprocessed_pseudogene GLYATL1P1 2 OTTHUMG00000167275.2 overlapping_locus +15050 chr11 HAVANA gene 58995439 58999689 1122.0 - 0 ENSG00000254786.1 unprocessed_pseudogene AP001636.1 2 OTTHUMG00000167276.2 overlapping_locus +15051 chr11 HAVANA gene 58905398 59043527 5440.0 + 0 ENSG00000166840.13 protein_coding GLYATL1 2 OTTHUMG00000167221.5 overlapping_locus +15052 chr11 HAVANA gene 59042737 59050971 906.0 + 0 ENSG00000254399.2 unprocessed_pseudogene GLYATL1P4 2 OTTHUMG00000167277.3 overlapping_locus +15053 chr11 HAVANA gene 58933643 59058659 3698.0 - 0 ENSG00000255240.5 antisense AP001636.3 1 OTTHUMG00000167434.2 overlapping_locus +15054 chr11 HAVANA gene 59086307 59094786 909.0 + 0 ENSG00000255151.2 protein_coding GLYATL1B 2 OTTHUMG00000167278.6 +15055 chr11 HAVANA gene 59107185 59127410 3863.0 + 0 ENSG00000189057.10 protein_coding FAM111B 2 OTTHUMG00000167279.4 +15056 chr11 HAVANA gene 59142121 59142610 490.0 - 0 ENSG00000255381.1 processed_pseudogene AP001258.1 1 OTTHUMG00000167436.1 pseudo_consens,overlapping_locus +15057 chr11 HAVANA gene 59130133 59143015 2645.0 - 0 ENSG00000245571.6 lincRNA FAM111A-DT 2 OTTHUMG00000167435.1 overlapping_locus +15058 chr11 HAVANA gene 59142748 59155039 7221.0 + 0 ENSG00000166801.15 protein_coding FAM111A 2 OTTHUMG00000167280.6 +15059 chr11 HAVANA gene 59171430 59208587 6072.0 + 0 ENSG00000110042.7 protein_coding DTX4 2 OTTHUMG00000167336.2 +15060 chr11 HAVANA gene 59208510 59212951 4442.0 - 0 ENSG00000197629.5 protein_coding MPEG1 2 OTTHUMG00000162676.1 +15061 chr11 ENSEMBL gene 59214406 59214699 294.0 - 0 ENSG00000263999.2 misc_RNA RN7SL42P 3 +15062 chr11 HAVANA gene 59255360 59259486 454.0 + 0 ENSG00000225802.3 unprocessed_pseudogene WARSP1 2 OTTHUMG00000167476.1 +15063 chr11 HAVANA gene 59263389 59263802 414.0 - 0 ENSG00000254799.1 processed_pseudogene SLC25A47P1 2 OTTHUMG00000167415.1 +15064 chr11 HAVANA gene 59268876 59284033 2805.0 - 0 ENSG00000214797.3 lincRNA AP002358.1 2 OTTHUMG00000167437.1 +15065 chr11 HAVANA gene 59287339 59289486 2148.0 - 0 ENSG00000254704.3 processed_pseudogene AP002358.2 2 OTTHUMG00000167416.4 +15066 chr11 ENSEMBL gene 59291052 59291333 282.0 - 0 ENSG00000263944.2 misc_RNA RN7SL435P 3 +15067 chr11 HAVANA gene 59309681 59310576 896.0 - 0 ENSG00000235678.3 unprocessed_pseudogene OR5AN2P 2 OTTHUMG00000167417.1 +15068 chr11 HAVANA gene 59332757 59334086 1330.0 - 0 ENSG00000255386.1 unprocessed_pseudogene OR5BR1P 2 OTTHUMG00000167418.1 +15069 chr11 HAVANA gene 59358895 59371714 8502.0 + 0 ENSG00000176495.3 protein_coding OR5AN1 2 OTTHUMG00000167337.2 +15070 chr11 HAVANA gene 59391354 59392292 939.0 - 0 ENSG00000198261.3 unprocessed_pseudogene OR5BB1P 2 OTTHUMG00000167338.1 +15071 chr11 HAVANA gene 59416969 59426412 9444.0 - 0 ENSG00000172324.5 protein_coding OR5A2 2 OTTHUMG00000167419.2 +15072 chr11 HAVANA gene 59436469 59451380 8612.0 + 0 ENSG00000172320.3 protein_coding OR5A1 2 OTTHUMG00000167339.2 +15073 chr11 HAVANA gene 59456938 59457991 1054.0 + 0 ENSG00000166884.2 protein_coding OR4D6 2 OTTHUMG00000167340.1 +15074 chr11 HAVANA gene 59473315 59479361 2482.0 + 0 ENSG00000254466.2 protein_coding OR4D10 2 OTTHUMG00000167341.2 +15075 chr11 HAVANA gene 59491652 59492581 930.0 + 0 ENSG00000204989.3 unprocessed_pseudogene OR4D8P 2 OTTHUMG00000154282.1 +15076 chr11 HAVANA gene 59503576 59504511 936.0 + 0 ENSG00000176200.1 protein_coding OR4D11 2 OTTHUMG00000167342.2 +15077 chr11 HAVANA gene 59511368 59520703 6274.0 + 0 ENSG00000172742.5 protein_coding OR4D9 2 OTTHUMG00000167343.3 +15078 chr11 HAVANA gene 59531754 59532695 942.0 + 0 ENSG00000254770.1 unprocessed_pseudogene OR4D7P 1 OTTHUMG00000167344.1 pseudo_consens +15079 chr11 HAVANA gene 59561146 59566074 769.0 - 0 ENSG00000255008.2 lincRNA AP000442.1 2 OTTHUMG00000167421.2 +15080 chr11 ENSEMBL gene 59595077 59595158 82.0 - 0 ENSG00000264559.1 miRNA MIR3162 3 +15081 chr11 HAVANA gene 59574398 59616144 5492.0 - 0 ENSG00000110048.11 protein_coding OSBP 2 OTTHUMG00000167422.2 ncRNA_host +15082 chr11 HAVANA gene 59616429 59639861 760.0 + 0 ENSG00000255139.1 antisense AP000442.2 1 OTTHUMG00000167345.1 +15083 chr11 HAVANA gene 59636716 59668980 4278.0 - 0 ENSG00000166889.13 protein_coding PATL1 2 OTTHUMG00000167423.2 +15084 chr11 HAVANA gene 59669312 59676041 914.0 + 0 ENSG00000255355.1 processed_transcript AP000640.2 2 OTTHUMG00000167349.1 +15085 chr11 ENSEMBL gene 59706057 59706383 327.0 - 0 ENSG00000223223.1 misc_RNA RN7SKP192 3 +15086 chr11 HAVANA gene 59712916 59713845 930.0 - 0 ENSG00000172289.3 protein_coding OR10V1 2 OTTHUMG00000167406.2 +15087 chr11 HAVANA gene 59728519 59729492 974.0 + 0 ENSG00000254403.1 unprocessed_pseudogene OR10Y1P 2 OTTHUMG00000167350.1 overlapping_locus +15088 chr11 HAVANA gene 59741325 59742049 725.0 + 0 ENSG00000254743.1 unprocessed_pseudogene OR10V3P 2 OTTHUMG00000167351.1 +15089 chr11 HAVANA gene 59748811 59749574 764.0 + 0 ENSG00000255538.1 unprocessed_pseudogene OR10V2P 2 OTTHUMG00000167352.1 +15090 chr11 HAVANA gene 59752578 59754975 1962.0 - 0 ENSG00000254477.2 processed_transcript AP000640.1 2 OTTHUMG00000167407.2 +15091 chr11 HAVANA gene 59781318 59781722 405.0 - 0 ENSG00000234964.4 processed_pseudogene FABP5P7 2 OTTHUMG00000167408.2 +15092 chr11 HAVANA gene 59713456 59805882 6568.0 + 0 ENSG00000166900.16 protein_coding STX3 2 OTTHUMG00000167353.5 overlapping_locus +15093 chr11 HAVANA gene 59806135 59810872 2271.0 - 0 ENSG00000166902.4 protein_coding MRPL16 2 OTTHUMG00000167410.4 +15094 chr11 HAVANA gene 59829268 59845501 2409.0 - 0 ENSG00000134812.7 protein_coding GIF 2 OTTHUMG00000167399.1 +15095 chr11 HAVANA gene 59852800 59866575 1586.0 - 0 ENSG00000134827.7 protein_coding TCN1 2 OTTHUMG00000167400.1 +15096 chr11 HAVANA gene 59878809 59896481 850.0 + 0 ENSG00000285231.1 protein_coding OOSP3 2 OTTHUMG00000192598.1 +15097 chr11 HAVANA gene 59898185 59899133 949.0 + 0 ENSG00000270929.1 processed_pseudogene SRD5A3P1 1 OTTHUMG00000184761.1 pseudo_consens +15098 chr11 HAVANA gene 59938432 59957480 1116.0 + 0 ENSG00000284873.1 protein_coding OOSP1 2 OTTHUMG00000192599.1 +15099 chr11 HAVANA gene 59964033 59970146 577.0 + 0 ENSG00000285010.1 protein_coding OOSP4A 2 OTTHUMG00000187492.2 overlapping_locus +15100 chr11 HAVANA gene 59942879 59970146 888.0 + 0 ENSG00000214788.3 processed_transcript OOSP1 2 OTTHUMG00000192600.1 overlapping_locus +15101 chr11 HAVANA gene 59978020 60031077 1701.0 + 0 ENSG00000255393.2 protein_coding OOSP4B 2 OTTHUMG00000167378.2 +15102 chr11 HAVANA gene 60040275 60048044 1897.0 + 0 ENSG00000149507.6 protein_coding OOSP2 2 OTTHUMG00000167379.2 +15103 chr11 HAVANA gene 60056587 60071128 2095.0 + 0 ENSG00000149516.13 protein_coding MS4A3 2 OTTHUMG00000167380.2 +15104 chr11 HAVANA gene 60077350 60078401 737.0 + 0 ENSG00000255331.1 processed_pseudogene AP000790.1 1 OTTHUMG00000167381.1 pseudo_consens +15105 chr11 HAVANA gene 60088261 60098466 4453.0 + 0 ENSG00000149534.8 protein_coding MS4A2 2 OTTHUMG00000167239.2 +15106 chr11 HAVANA gene 60159687 60160822 385.0 - 0 ENSG00000254952.1 lincRNA AP001257.1 2 OTTHUMG00000167240.1 +15107 chr11 HAVANA gene 60172014 60184666 5791.0 - 0 ENSG00000110077.14 protein_coding MS4A6A 1 OTTHUMG00000167241.4 +15108 chr11 ENSEMBL gene 60209071 60209156 86.0 - 0 ENSG00000275344.1 miRNA MIR6503 3 +15109 chr11 HAVANA gene 60201253 60243088 1558.0 - 0 ENSG00000214787.9 protein_coding MS4A4E 2 OTTHUMG00000167354.3 ncRNA_host +15110 chr11 HAVANA gene 60185702 60317944 2948.0 + 0 ENSG00000110079.17 protein_coding MS4A4A 2 OTTHUMG00000154949.4 +15111 chr11 HAVANA gene 60378482 60395951 4348.0 + 0 ENSG00000166927.12 protein_coding MS4A7 1 OTTHUMG00000167356.4 overlapping_locus +15112 chr11 HAVANA gene 60334831 60396596 1057.0 + 0 ENSG00000166926.8 protein_coding MS4A6E 2 OTTHUMG00000167355.1 overlapping_locus +15113 chr11 HAVANA gene 60378530 60417756 4006.0 + 0 ENSG00000166928.10 protein_coding MS4A14 2 OTTHUMG00000167357.4 overlapping_locus +15114 chr11 HAVANA gene 60429589 60455214 897.0 + 0 ENSG00000166930.6 protein_coding MS4A5 2 OTTHUMG00000167613.1 +15115 chr11 HAVANA gene 60455752 60470760 4872.0 + 0 ENSG00000156738.17 protein_coding MS4A1 2 OTTHUMG00000167614.2 +15116 chr11 HAVANA gene 60492778 60507430 1839.0 + 0 ENSG00000071203.9 protein_coding MS4A12 2 OTTHUMG00000165364.2 +15117 chr11 HAVANA gene 60515413 60542721 1289.0 + 0 ENSG00000204979.7 protein_coding MS4A13 1 OTTHUMG00000167615.1 +15118 chr11 HAVANA gene 60577856 60608418 361.0 + 0 ENSG00000283601.1 unprocessed_pseudogene AP003399.1 2 OTTHUMG00000191779.1 +15119 chr11 HAVANA gene 60615729 60687267 1977.0 + 0 ENSG00000181995.12 transcribed_unitary_pseudogene LINC00301 2 OTTHUMG00000141269.3 +15120 chr11 HAVANA gene 60699574 60715811 2583.0 + 0 ENSG00000166959.7 protein_coding MS4A8 1 OTTHUMG00000167686.2 +15121 chr11 HAVANA gene 60729304 60744212 1433.0 + 0 ENSG00000214782.7 protein_coding MS4A18 1 OTTHUMG00000167687.2 +15122 chr11 HAVANA gene 60756953 60776732 2195.0 + 0 ENSG00000166961.14 protein_coding MS4A15 2 OTTHUMG00000167688.1 +15123 chr11 HAVANA gene 60785348 60801305 2296.0 + 0 ENSG00000172689.1 protein_coding MS4A10 2 OTTHUMG00000167689.1 +15124 chr11 HAVANA gene 60813932 60821739 355.0 - 0 ENSG00000255845.1 antisense AP000777.1 1 OTTHUMG00000167703.1 +15125 chr11 HAVANA gene 60835996 60842965 501.0 - 0 ENSG00000255959.1 antisense AP000777.2 2 OTTHUMG00000167704.1 overlapping_locus +15126 chr11 HAVANA gene 60842071 60851081 2044.0 + 0 ENSG00000110104.12 protein_coding CCDC86 2 OTTHUMG00000167706.3 +15127 chr11 HAVANA gene 60841806 60851081 491.0 - 0 ENSG00000256813.1 antisense AP000777.3 2 OTTHUMG00000167705.1 overlapping_locus +15128 chr11 HAVANA gene 60850940 60855971 2895.0 - 0 ENSG00000183134.4 protein_coding PTGDR2 2 OTTHUMG00000167796.1 overlapping_locus,retrogene +15129 chr11 HAVANA gene 60867562 60875693 2436.0 + 0 ENSG00000149506.11 protein_coding ZP1 2 OTTHUMG00000167797.2 +15130 chr11 HAVANA gene 60890730 60906588 2739.0 - 0 ENSG00000110107.8 protein_coding PRPF19 1 OTTHUMG00000167798.2 +15131 chr11 HAVANA gene 60906789 60909742 810.0 + 0 ENSG00000257052.1 antisense AP003721.4 2 OTTHUMG00000167799.1 +15132 chr11 HAVANA gene 60913166 60914052 405.0 - 0 ENSG00000256944.1 antisense AP003721.3 1 OTTHUMG00000167800.1 +15133 chr11 HAVANA gene 60913874 60923443 2421.0 + 0 ENSG00000110108.9 protein_coding TMEM109 2 OTTHUMG00000167801.1 +15134 chr11 HAVANA gene 60918469 60925397 864.0 - 0 ENSG00000256196.1 antisense AP003721.1 2 OTTHUMG00000167802.1 +15135 chr11 HAVANA gene 60924463 60937159 7271.0 + 0 ENSG00000006118.14 protein_coding TMEM132A 1 OTTHUMG00000167803.2 +15136 chr11 HAVANA gene 60937084 60952530 6118.0 - 0 ENSG00000110446.10 protein_coding SLC15A3 1 OTTHUMG00000167804.4 +15137 chr11 ENSEMBL gene 60985061 60985167 107.0 - 0 ENSG00000207153.1 snRNA RNU6-933P 3 +15138 chr11 HAVANA gene 60971680 61020377 5958.0 + 0 ENSG00000013725.14 protein_coding CD6 2 OTTHUMG00000167823.2 +15139 chr11 HAVANA gene 61055737 61067535 452.0 + 0 ENSG00000256733.1 lincRNA AP003721.2 2 OTTHUMG00000167824.1 +15140 chr11 HAVANA gene 61102395 61127852 3221.0 + 0 ENSG00000110448.10 protein_coding CD5 2 OTTHUMG00000167825.3 +15141 chr11 HAVANA gene 61143380 61145464 2085.0 - 0 ENSG00000279549.1 TEC AP000437.1 2 OTTHUMG00000168262.1 overlapping_locus +15142 chr11 HAVANA gene 61130256 61161617 3960.0 - 0 ENSG00000167987.10 protein_coding VPS37C 2 OTTHUMG00000167826.2 overlapping_locus +15143 chr11 HAVANA gene 61203307 61213098 5039.0 + 0 ENSG00000229859.9 protein_coding PGA3 2 OTTHUMG00000168071.3 +15144 chr11 HAVANA gene 61222216 61231927 5148.0 + 0 ENSG00000229183.8 protein_coding PGA4 2 OTTHUMG00000168073.2 overlapping_locus +15145 chr11 HAVANA gene 61227168 61248533 267.0 + 0 ENSG00000256220.1 processed_transcript AP003037.1 2 OTTHUMG00000168074.1 overlapping_locus +15146 chr11 HAVANA gene 61241042 61251448 2913.0 + 0 ENSG00000256713.7 protein_coding PGA5 2 OTTHUMG00000168075.3 overlapping_locus +15147 chr11 HAVANA gene 61258286 61295424 4874.0 - 0 ENSG00000167992.12 protein_coding VWCE 2 OTTHUMG00000168208.3 +15148 chr11 HAVANA gene 61299451 61342596 13950.0 - 0 ENSG00000167986.13 protein_coding DDB1 1 OTTHUMG00000168209.4 +15149 chr11 HAVANA gene 61333210 61353295 8136.0 + 0 ENSG00000149476.15 protein_coding TKFC 1 OTTHUMG00000168076.5 overlapping_locus +15150 chr11 HAVANA gene 61352244 61354477 2234.0 + 0 ENSG00000279246.1 TEC AP003108.3 2 OTTHUMG00000168278.1 overlapping_locus +15151 chr11 HAVANA gene 61348745 61362299 10597.0 - 0 ENSG00000162144.9 protein_coding CYB561A3 1 OTTHUMG00000157187.8 +15152 chr11 HAVANA gene 61362001 61369509 6348.0 + 0 ENSG00000149483.11 protein_coding TMEM138 2 OTTHUMG00000168145.3 +15153 chr11 HAVANA gene 61391687 61398863 2364.0 + 0 ENSG00000187049.9 protein_coding TMEM216 2 OTTHUMG00000168146.5 +15154 chr11 HAVANA gene 61426448 61427325 878.0 - 0 ENSG00000279632.1 TEC AP003108.4 2 OTTHUMG00000168147.1 overlapping_locus +15155 chr11 HAVANA gene 61402641 61430031 6036.0 - 0 ENSG00000149532.15 protein_coding CPSF7 1 OTTHUMG00000168198.5 overlapping_locus +15156 chr11 ENSEMBL gene 61444149 61444423 275.0 + 0 ENSG00000240823.3 misc_RNA RN7SL23P 3 +15157 chr11 HAVANA gene 61430042 61447529 2492.0 + 0 ENSG00000167985.6 protein_coding SDHAF2 1 OTTHUMG00000168279.2 ncRNA_host,overlapping_locus +15158 chr11 HAVANA gene 61429220 61485822 7522.0 + 0 ENSG00000256591.5 protein_coding AP003108.2 2 OTTHUMG00000168148.5 ncRNA_host,overlapping_locus +15159 chr11 HAVANA gene 61481120 61490931 2400.0 + 0 ENSG00000162148.10 protein_coding PPP1R32 2 OTTHUMG00000168176.2 overlapping_locus +15160 chr11 HAVANA gene 61496440 61500076 554.0 + 0 ENSG00000255931.1 lincRNA AP003108.1 2 OTTHUMG00000168177.1 +15161 chr11 ENSEMBL gene 61508596 61508657 62.0 + 0 ENSG00000266006.1 miRNA MIR4488 3 +15162 chr11 HAVANA gene 61508800 61511018 2219.0 + 0 ENSG00000204950.3 protein_coding LRRC10B 2 OTTHUMG00000168178.1 retrogene +15163 chr11 HAVANA gene 61525708 61526602 895.0 - 0 ENSG00000279878.1 TEC AP003108.5 2 OTTHUMG00000168281.1 overlapping_locus +15164 chr11 HAVANA gene 61539516 61542259 1831.0 - 0 ENSG00000256443.1 lincRNA AP003559.1 2 OTTHUMG00000168200.1 overlapping_locus +15165 chr11 HAVANA gene 61515313 61581148 5953.0 - 0 ENSG00000011347.9 protein_coding SYT7 1 OTTHUMG00000168199.2 overlapping_locus +15166 chr11 HAVANA gene 61588494 61607550 2349.0 + 0 ENSG00000250230.2 lincRNA AP002754.1 2 OTTHUMG00000168159.1 +15167 chr11 HAVANA gene 61615036 61639449 3909.0 + 0 ENSG00000243742.5 transcribed_processed_pseudogene RPLP0P2 1 OTTHUMG00000158396.1 pseudo_consens +15168 chr11 HAVANA gene 61654665 61655702 462.0 - 0 ENSG00000255947.1 lincRNA AP002754.2 2 OTTHUMG00000168169.1 +15169 chr11 HAVANA gene 61680433 61747001 5757.0 + 0 ENSG00000134780.9 protein_coding DAGLA 2 OTTHUMG00000168160.1 +15170 chr11 HAVANA gene 61746493 61757655 2889.0 - 0 ENSG00000124915.10 lincRNA DKFZP434K028 2 OTTHUMG00000168170.1 +15171 chr11 HAVANA gene 61752642 61788518 10680.0 + 0 ENSG00000124920.13 protein_coding MYRF 2 OTTHUMG00000168161.2 +15172 chr11 ENSEMBL gene 61792495 61792561 67.0 - 0 ENSG00000284108.1 miRNA MIR611 3 +15173 chr11 HAVANA gene 61768501 61792802 3068.0 - 0 ENSG00000134825.15 protein_coding TMEM258 1 OTTHUMG00000168172.1 ncRNA_host +15174 chr11 HAVANA gene 61792637 61797244 2478.0 + 0 ENSG00000168496.3 protein_coding FEN1 1 OTTHUMG00000168162.4 overlapping_locus +15175 chr11 ENSEMBL gene 61815161 61815240 80.0 - 0 ENSG00000284416.1 miRNA MIR1908 3 +15176 chr11 HAVANA gene 61799625 61829318 10230.0 - 0 ENSG00000149485.18 protein_coding FADS1 1 OTTHUMG00000157155.7 ncRNA_host +15177 chr11 HAVANA gene 61792980 61867354 11026.0 + 0 ENSG00000134824.13 protein_coding FADS2 1 OTTHUMG00000163794.4 overlapping_locus +15178 chr11 ENSEMBL gene 61878216 61878278 63.0 - 0 ENSG00000277892.1 miRNA MIR6746 3 +15179 chr11 HAVANA gene 61873519 61892051 6283.0 - 0 ENSG00000221968.8 protein_coding FADS3 1 OTTHUMG00000167500.4 ncRNA_host +15180 chr11 HAVANA gene 61897301 61920269 3006.0 - 0 ENSG00000167994.11 protein_coding RAB3IL1 1 OTTHUMG00000167524.2 +15181 chr11 ENSEMBL gene 61937894 61938000 107.0 + 0 ENSG00000200898.1 snRNA RNU6-1243P 3 +15182 chr11 HAVANA gene 61949821 61965515 8930.0 + 0 ENSG00000167995.15 protein_coding BEST1 1 OTTHUMG00000167469.3 +15183 chr11 HAVANA gene 61959718 61967660 2030.0 - 0 ENSG00000167996.15 protein_coding FTH1 1 OTTHUMG00000166217.5 +15184 chr11 HAVANA gene 61967794 61969490 1697.0 + 0 ENSG00000279491.1 TEC AP003733.4 2 OTTHUMG00000187461.1 +15185 chr11 HAVANA gene 62011751 62012602 852.0 - 0 ENSG00000244176.1 processed_pseudogene AP003733.1 1 OTTHUMG00000158398.1 pseudo_consens +15186 chr11 HAVANA gene 62072882 62073052 171.0 - 0 ENSG00000254424.1 processed_pseudogene AP003733.2 2 OTTHUMG00000167501.1 +15187 chr11 HAVANA gene 62077277 62082184 788.0 - 0 ENSG00000255553.1 lincRNA AP003733.3 2 OTTHUMG00000167502.1 +15188 chr11 HAVANA gene 62116470 62123767 988.0 - 0 ENSG00000285656.1 lincRNA AP002793.1 2 OTTHUMG00000193049.1 +15189 chr11 HAVANA gene 62123973 62153163 4473.0 + 0 ENSG00000149503.12 protein_coding INCENP 2 OTTHUMG00000167470.4 +15190 chr11 HAVANA gene 62169293 62169828 536.0 + 0 ENSG00000236607.3 processed_pseudogene EEF1DP8 1 OTTHUMG00000167503.1 pseudo_consens +15191 chr11 HAVANA gene 62190216 62193539 453.0 + 0 ENSG00000168515.3 protein_coding SCGB1D1 2 OTTHUMG00000167505.1 +15192 chr11 HAVANA gene 62208668 62213939 521.0 + 0 ENSG00000124939.5 protein_coding SCGB2A1 2 OTTHUMG00000167506.2 +15193 chr11 HAVANA gene 62242210 62244808 480.0 + 0 ENSG00000124935.3 protein_coding SCGB1D2 2 OTTHUMG00000167508.1 +15194 chr11 HAVANA gene 62213427 62260549 353.0 - 0 ENSG00000254404.1 antisense AP003306.1 1 OTTHUMG00000167507.1 +15195 chr11 HAVANA gene 62270155 62273156 1508.0 + 0 ENSG00000110484.6 protein_coding SCGB2A2 2 OTTHUMG00000167509.1 +15196 chr11 HAVANA gene 62296277 62299064 439.0 - 0 ENSG00000197745.2 protein_coding SCGB1D4 2 OTTHUMG00000167510.2 +15197 chr11 HAVANA gene 62330946 62331813 868.0 + 0 ENSG00000255213.1 processed_pseudogene NPM1P35 1 OTTHUMG00000167511.1 pseudo_consens +15198 chr11 HAVANA gene 62336911 62338090 485.0 - 0 ENSG00000255118.1 antisense AP003306.2 2 OTTHUMG00000167512.1 +15199 chr11 HAVANA gene 62371146 62373168 1557.0 + 0 ENSG00000254454.2 processed_pseudogene RCC2P6 1 OTTHUMG00000167514.2 pseudo_consens,overlapping_locus +15200 chr11 HAVANA gene 62391516 62393372 590.0 - 0 ENSG00000255126.1 antisense AP003064.1 2 OTTHUMG00000167525.1 +15201 chr11 HAVANA gene 62337448 62393412 4586.0 + 0 ENSG00000162174.12 protein_coding ASRGL1 2 OTTHUMG00000167513.4 overlapping_locus +15202 chr11 HAVANA gene 62405103 62423195 582.0 + 0 ENSG00000149021.6 protein_coding SCGB1A1 1 OTTHUMG00000167526.4 +15203 chr11 HAVANA gene 62421845 62426724 510.0 - 0 ENSG00000255446.1 antisense AP003064.2 2 OTTHUMG00000167527.1 +15204 chr11 HAVANA gene 62537312 62542018 264.0 + 0 ENSG00000250659.2 antisense AP001363.1 2 OTTHUMG00000167718.1 +15205 chr11 HAVANA gene 62545999 62547699 391.0 + 0 ENSG00000257058.1 antisense AP001363.2 2 OTTHUMG00000167749.1 +15206 chr11 HAVANA gene 62433542 62556235 19465.0 - 0 ENSG00000124942.13 protein_coding AHNAK 1 OTTHUMG00000167558.6 +15207 chr11 ENSEMBL gene 62567011 62567071 61.0 - 0 ENSG00000276102.1 miRNA MIR6747 3 +15208 chr11 HAVANA gene 62559601 62574086 2716.0 - 0 ENSG00000254772.9 protein_coding EEF1G 2 OTTHUMG00000167567.1 ncRNA_host,overlapping_locus +15209 chr11 HAVANA gene 62559603 62591531 5197.0 - 0 ENSG00000255508.7 protein_coding AP002990.1 2 OTTHUMG00000167559.2 ncRNA_host,overlapping_locus +15210 chr11 HAVANA gene 62575045 62592177 4082.0 - 0 ENSG00000149016.15 protein_coding TUT1 1 OTTHUMG00000158564.4 overlapping_locus +15211 chr11 HAVANA gene 62593214 62601840 4236.0 - 0 ENSG00000149480.6 protein_coding MTA2 1 OTTHUMG00000167684.1 +15212 chr11 HAVANA gene 62606161 62606405 92.0 + 0 ENSG00000254964.1 antisense AP001458.1 2 OTTHUMG00000167544.1 +15213 chr11 HAVANA gene 62602218 62612765 5490.0 - 0 ENSG00000149499.11 protein_coding EML3 1 OTTHUMG00000149817.9 +15214 chr11 HAVANA gene 62611722 62615120 2495.0 + 0 ENSG00000149489.8 protein_coding ROM1 1 OTTHUMG00000167528.4 +15215 chr11 HAVANA gene 62615296 62622175 2428.0 - 0 ENSG00000149541.9 protein_coding B3GAT3 1 OTTHUMG00000167685.2 +15216 chr11 HAVANA gene 62624826 62646726 5027.0 - 0 ENSG00000089597.17 protein_coding GANAB 1 OTTHUMG00000167696.6 +15217 chr11 HAVANA gene 62646848 62653302 3285.0 - 0 ENSG00000185085.2 protein_coding INTS5 2 OTTHUMG00000167605.1 overlapping_locus +15218 chr11 HAVANA gene 62649694 62665178 577.0 - 0 ENSG00000255432.1 protein_coding AP001458.2 1 OTTHUMG00000167606.1 overlapping_locus +15219 chr11 HAVANA gene 62662816 62665217 887.0 - 0 ENSG00000278615.4 protein_coding C11orf98 2 OTTHUMG00000167588.6 overlapping_locus +15220 chr11 ENSEMBL gene 62665422 62665570 149.0 + 0 ENSG00000206597.1 snoRNA SNORA57 3 +15221 chr11 HAVANA gene 62665309 62668496 3185.0 + 0 ENSG00000214756.7 protein_coding CSKMT 1 OTTHUMG00000167545.2 ncRNA_host +15222 chr11 HAVANA gene 62662817 62672255 3362.0 - 0 ENSG00000162194.12 protein_coding LBHD1 1 OTTHUMG00000187541.4 overlapping_locus +15223 chr11 HAVANA gene 62670273 62673687 2398.0 + 0 ENSG00000204922.4 protein_coding UQCC3 2 OTTHUMG00000167546.2 +15224 chr11 HAVANA gene 62676498 62679117 2532.0 - 0 ENSG00000162191.13 protein_coding UBXN1 1 OTTHUMG00000167580.2 +15225 chr11 HAVANA gene 62686402 62689899 2585.0 - 0 ENSG00000177363.4 protein_coding LRRN4CL 2 OTTHUMG00000167581.1 +15226 chr11 HAVANA gene 62707658 62709201 882.0 + 0 ENSG00000162188.5 protein_coding GNG3 2 OTTHUMG00000167560.1 +15227 chr11 HAVANA gene 62690275 62709845 3965.0 - 0 ENSG00000168000.14 protein_coding BSCL2 1 OTTHUMG00000150624.7 overlapping_locus +15228 chr11 HAVANA gene 62690275 62727384 4001.0 - 0 ENSG00000234857.2 protein_coding HNRNPUL2-BSCL2 2 OTTHUMG00000167772.1 overlapping_locus +15229 chr11 HAVANA gene 62712630 62727472 5416.0 - 0 ENSG00000214753.3 protein_coding HNRNPUL2 2 OTTHUMG00000167773.3 overlapping_locus +15230 chr11 HAVANA gene 62728069 62740293 2657.0 + 0 ENSG00000162222.13 protein_coding TTC9C 2 OTTHUMG00000167607.3 +15231 chr11 HAVANA gene 62748319 62754188 3348.0 - 0 ENSG00000185670.7 protein_coding ZBTB3 2 OTTHUMG00000167608.4 +15232 chr11 HAVANA gene 62761544 62766710 1923.0 + 0 ENSG00000168002.11 protein_coding POLR2G 2 OTTHUMG00000167609.2 +15233 chr11 HAVANA gene 62771120 62771606 487.0 - 0 ENSG00000267811.1 antisense AP001160.2 2 OTTHUMG00000183001.1 +15234 chr11 HAVANA gene 62786023 62786785 763.0 - 0 ENSG00000269176.2 antisense AP001160.3 2 OTTHUMG00000183002.2 overlapping_locus +15235 chr11 HAVANA gene 62771303 62787342 3149.0 + 0 ENSG00000162227.7 protein_coding TAF6L 2 OTTHUMG00000167610.2 +15236 chr11 ENSEMBL gene 62789815 62789885 71.0 + 0 ENSG00000284535.1 miRNA MIR6748 3 +15237 chr11 HAVANA gene 62787415 62790405 1496.0 + 0 ENSG00000185475.10 protein_coding TMEM179B 1 OTTHUMG00000167611.3 ncRNA_host +15238 chr11 HAVANA gene 62771629 62792021 2280.0 - 0 ENSG00000168569.7 protein_coding TMEM223 1 OTTHUMG00000167693.1 overlapping_locus +15239 chr11 ENSEMBL gene 62792702 62792771 70.0 - 0 ENSG00000274066.1 miRNA MIR6514 3 +15240 chr11 HAVANA gene 62792123 62806302 6194.0 - 0 ENSG00000162231.13 protein_coding NXF1 1 OTTHUMG00000167612.7 ncRNA_host +15241 chr11 HAVANA gene 62807682 62808063 382.0 - 0 ENSG00000269463.1 sense_intronic AP001160.4 2 OTTHUMG00000183003.1 overlapping_locus +15242 chr11 ENSEMBL gene 62815966 62816067 102.0 - 0 ENSG00000252361.1 snRNA RNU6-118P 3 +15243 chr11 HAVANA gene 62806897 62832088 2257.0 - 0 ENSG00000162236.11 protein_coding STX5 2 OTTHUMG00000143864.2 ncRNA_host,overlapping_locus +15244 chr11 HAVANA gene 62832319 62832803 485.0 - 0 ENSG00000283268.1 protein_coding TEX54 2 OTTHUMG00000191674.1 overlapping_locus +15245 chr11 HAVANA gene 62832234 62834043 765.0 + 0 ENSG00000256690.1 antisense AP001160.1 2 OTTHUMG00000167742.1 +15246 chr11 ENSEMBL gene 62841619 62841809 191.0 - 0 ENSG00000222328.1 snRNA RNU2-2P 3 +15247 chr11 HAVANA gene 62832342 62841809 4247.0 - 0 ENSG00000133316.15 protein_coding WDR74 1 OTTHUMG00000167695.4 ncRNA_host,overlapping_locus +15248 chr11 ENSEMBL gene 62852910 62853035 126.0 - 0 ENSG00000277194.1 snoRNA SNORD22 3 +15249 chr11 ENSEMBL gene 62853663 62853732 70.0 - 0 ENSG00000277846.1 snoRNA SNORD30 3 +15250 chr11 ENSEMBL gene 62854161 62854285 125.0 - 0 ENSG00000278527.1 snoRNA RF00099 3 +15251 chr11 ENSEMBL gene 62854621 62854695 75.0 - 0 ENSG00000274544.1 snoRNA SNORD28 3 +15252 chr11 ENSEMBL gene 62855012 62855083 72.0 - 0 ENSG00000275996.1 snoRNA SNORD27 3 +15253 chr11 ENSEMBL gene 62855292 62855366 75.0 - 0 ENSG00000276788.1 snoRNA SNORD26 3 +15254 chr11 ENSEMBL gene 62855564 62855632 69.0 - 0 ENSG00000275043.1 snoRNA SNORD25 3 +15255 chr11 HAVANA gene 62851988 62855914 3756.0 - 0 ENSG00000255717.6 processed_transcript SNHG1 2 OTTHUMG00000167743.1 ncRNA_host +15256 chr11 HAVANA gene 62856102 62888875 5178.0 + 0 ENSG00000168003.16 protein_coding SLC3A2 1 OTTHUMG00000074091.8 +15257 chr11 HAVANA gene 62909546 62918361 749.0 + 0 ENSG00000257002.1 antisense AP000438.1 2 OTTHUMG00000167766.1 +15258 chr11 HAVANA gene 62908679 62921807 3250.0 - 0 ENSG00000168539.3 protein_coding CHRM1 2 OTTHUMG00000167765.3 +15259 chr11 ENSEMBL gene 62935982 62936234 253.0 - 0 ENSG00000241082.3 misc_RNA RN7SL259P 3 +15260 chr11 HAVANA gene 62936427 62959852 996.0 - 0 ENSG00000285388.1 transcribed_unprocessed_pseudogene AP000438.2 2 OTTHUMG00000192381.1 overlapping_locus +15261 chr11 HAVANA gene 62936385 62984983 2407.0 - 0 ENSG00000197901.11 protein_coding SLC22A6 2 OTTHUMG00000167767.2 overlapping_locus +15262 chr11 HAVANA gene 62989154 63015839 8531.0 - 0 ENSG00000149452.15 protein_coding SLC22A8 2 OTTHUMG00000167768.2 +15263 chr11 HAVANA gene 63032503 63033103 601.0 - 0 ENSG00000256041.1 processed_pseudogene AP001858.2 1 OTTHUMG00000167769.1 pseudo_consens +15264 chr11 HAVANA gene 63046785 63048126 1342.0 + 0 ENSG00000253547.2 processed_pseudogene AP001858.1 1 OTTHUMG00000167770.1 pseudo_consens +15265 chr11 HAVANA gene 63115880 63116338 459.0 - 0 ENSG00000239924.1 processed_pseudogene RPL29P22 1 OTTHUMG00000158399.2 pseudo_consens,overlapping_locus +15266 chr11 HAVANA gene 63079940 63144221 2492.0 - 0 ENSG00000197658.9 protein_coding SLC22A24 1 OTTHUMG00000165372.3 overlapping_locus +15267 chr11 HAVANA gene 63163776 63229652 3752.0 - 0 ENSG00000196600.12 protein_coding SLC22A25 2 OTTHUMG00000165340.5 +15268 chr11 HAVANA gene 63237957 63239114 448.0 - 0 ENSG00000256863.1 unprocessed_pseudogene AP001880.2 2 OTTHUMG00000167777.1 +15269 chr11 HAVANA gene 63243085 63244004 799.0 + 0 ENSG00000256847.1 processed_pseudogene CCND2P1 1 OTTHUMG00000167849.1 pseudo_consens,overlapping_locus +15270 chr11 HAVANA gene 63265836 63266256 421.0 - 0 ENSG00000256181.1 unprocessed_pseudogene AP001880.1 2 OTTHUMG00000167778.1 +15271 chr11 HAVANA gene 63137867 63369718 3200.0 + 0 ENSG00000184999.11 protein_coding SLC22A10 2 OTTHUMG00000165197.3 overlapping_locus +15272 chr11 HAVANA gene 63369789 63410294 2362.0 + 0 ENSG00000149742.9 protein_coding SLC22A9 2 OTTHUMG00000167805.1 +15273 chr11 HAVANA gene 63469376 63470944 1252.0 + 0 ENSG00000275598.1 processed_pseudogene AP000484.1 2 OTTHUMG00000187767.1 +15274 chr11 HAVANA gene 63461404 63491194 3268.0 - 0 ENSG00000168004.9 protein_coding HRASLS5 1 OTTHUMG00000167806.3 +15275 chr11 HAVANA gene 63506084 63516774 2270.0 + 0 ENSG00000133317.14 protein_coding LGALS12 2 OTTHUMG00000167807.2 +15276 chr11 HAVANA gene 63536809 63546462 1299.0 + 0 ENSG00000133321.10 protein_coding RARRES3 2 OTTHUMG00000167850.2 +15277 chr11 HAVANA gene 63552770 63563383 742.0 - 0 ENSG00000133328.3 protein_coding HRASLS2 2 OTTHUMG00000167851.1 +15278 chr11 HAVANA gene 63573195 63616883 3116.0 - 0 ENSG00000176485.11 protein_coding PLA2G16 2 OTTHUMG00000167852.3 +15279 chr11 HAVANA gene 63616308 63621671 573.0 + 0 ENSG00000203520.3 antisense AP000753.1 2 OTTHUMG00000167853.1 +15280 chr11 HAVANA gene 63632233 63632720 488.0 + 0 ENSG00000270269.1 processed_pseudogene IMMP1LP1 1 OTTHUMG00000184758.1 pseudo_consens +15281 chr11 HAVANA gene 63637677 63658962 423.0 + 0 ENSG00000256789.1 antisense AP000753.2 2 OTTHUMG00000167855.1 +15282 chr11 HAVANA gene 63624087 63671921 7600.0 - 0 ENSG00000184743.12 protein_coding ATL3 1 OTTHUMG00000167854.2 +15283 chr11 HAVANA gene 63698596 63698764 169.0 - 0 ENSG00000271100.1 processed_pseudogene AP000753.3 1 OTTHUMG00000184819.1 pseudo_consens +15284 chr11 HAVANA gene 63681446 63759891 5792.0 + 0 ENSG00000133318.13 protein_coding RTN3 1 OTTHUMG00000168056.3 +15285 chr11 HAVANA gene 63759892 63768775 5948.0 - 0 ENSG00000188070.9 protein_coding C11orf95 2 OTTHUMG00000167840.4 +15286 chr11 ENSEMBL gene 63797784 63798071 288.0 - 0 ENSG00000264519.2 misc_RNA RN7SL596P 3 +15287 chr11 HAVANA gene 63813388 63827718 2807.0 + 0 ENSG00000168005.8 protein_coding SPINDOC 2 OTTHUMG00000167746.1 +15288 chr11 HAVANA gene 63834667 63834943 277.0 - 0 ENSG00000256280.1 processed_pseudogene AP006289.1 1 OTTHUMG00000167842.1 pseudo_consens +15289 chr11 ENSEMBL gene 63882587 63882685 99.0 - 0 ENSG00000202089.1 snRNA RNU6-1306P 3 +15290 chr11 HAVANA gene 63838928 63911019 6154.0 + 0 ENSG00000072518.20 protein_coding MARK2 1 OTTHUMG00000160504.7 +15291 chr11 HAVANA gene 63911221 63916844 2738.0 - 0 ENSG00000167771.5 protein_coding RCOR2 2 OTTHUMG00000150472.2 +15292 chr11 HAVANA gene 63938959 63957328 5321.0 + 0 ENSG00000110583.12 protein_coding NAA40 1 OTTHUMG00000167784.3 +15293 chr11 ENSEMBL gene 63970470 63970576 107.0 + 0 ENSG00000207200.1 snRNA RNU6-45P 3 +15294 chr11 HAVANA gene 63974607 63976543 507.0 + 0 ENSG00000176340.3 protein_coding COX8A 2 OTTHUMG00000167785.1 overlapping_locus +15295 chr11 HAVANA gene 63974620 63988346 559.0 + 0 ENSG00000256100.1 protein_coding AP000721.1 1 OTTHUMG00000167909.2 overlapping_locus +15296 chr11 HAVANA gene 63985853 64001811 5336.0 + 0 ENSG00000167770.11 protein_coding OTUB1 2 OTTHUMG00000167786.2 overlapping_locus +15297 chr11 HAVANA gene 64081690 64087175 732.0 + 0 ENSG00000256481.1 antisense AP006333.2 2 OTTHUMG00000167917.1 overlapping_locus +15298 chr11 HAVANA gene 64035970 64103653 883.0 + 0 ENSG00000256824.1 antisense AP000721.2 2 OTTHUMG00000167787.1 overlapping_locus +15299 chr11 HAVANA gene 64103188 64119173 3949.0 + 0 ENSG00000126500.3 protein_coding FLRT1 2 OTTHUMG00000167788.2 overlapping_locus +15300 chr11 HAVANA gene 64118272 64119210 575.0 - 0 ENSG00000256341.1 antisense AP006333.1 2 OTTHUMG00000167910.1 overlapping_locus +15301 chr11 HAVANA gene 63998558 64166106 2089.0 - 0 ENSG00000133315.10 protein_coding MACROD1 2 OTTHUMG00000167843.2 overlapping_locus +15302 chr11 HAVANA gene 64185272 64204543 4657.0 + 0 ENSG00000168439.16 protein_coding STIP1 1 OTTHUMG00000167789.6 +15303 chr11 HAVANA gene 64206678 64223886 3066.0 + 0 ENSG00000149781.12 protein_coding FERMT3 1 OTTHUMG00000167790.8 +15304 chr11 HAVANA gene 64223799 64226254 2210.0 - 0 ENSG00000149743.13 protein_coding TRPT1 2 OTTHUMG00000167844.6 +15305 chr11 HAVANA gene 64225941 64230686 3721.0 + 0 ENSG00000149761.8 protein_coding NUDT22 1 OTTHUMG00000167791.7 overlapping_locus +15306 chr11 HAVANA gene 64230278 64234286 2807.0 + 0 ENSG00000110011.13 protein_coding DNAJC4 1 OTTHUMG00000167792.6 overlapping_locus +15307 chr11 HAVANA gene 64229214 64234352 1051.0 - 0 ENSG00000256116.1 antisense AP001453.1 1 OTTHUMG00000167845.2 +15308 chr11 HAVANA gene 64234538 64238793 1545.0 + 0 ENSG00000173511.9 protein_coding VEGFB 2 OTTHUMG00000167813.3 +15309 chr11 HAVANA gene 64241003 64244132 1608.0 + 0 ENSG00000173486.12 protein_coding FKBP2 2 OTTHUMG00000167814.4 +15310 chr11 HAVANA gene 64244480 64246941 1655.0 - 0 ENSG00000173457.10 protein_coding PPP1R14B 1 OTTHUMG00000167846.3 overlapping_locus +15311 chr11 HAVANA gene 64245964 64248217 597.0 + 0 ENSG00000256940.1 antisense AP001453.2 2 OTTHUMG00000167815.1 +15312 chr11 HAVANA gene 64246939 64249494 853.0 - 0 ENSG00000257086.1 lincRNA AP001453.3 2 OTTHUMG00000167847.2 overlapping_locus +15313 chr11 HAVANA gene 64251523 64269150 4964.0 + 0 ENSG00000149782.11 protein_coding PLCB3 2 OTTHUMG00000167816.1 +15314 chr11 HAVANA gene 64269830 64284704 1708.0 - 0 ENSG00000002330.13 protein_coding BAD 1 OTTHUMG00000134302.4 +15315 chr11 HAVANA gene 64270062 64289500 4031.0 + 0 ENSG00000173264.14 protein_coding GPR137 1 OTTHUMG00000167817.8 +15316 chr11 ENSEMBL gene 64296037 64296138 102.0 + 0 ENSG00000207024.1 misc_RNA RF00019 3 +15317 chr11 HAVANA gene 64291302 64300031 2632.0 + 0 ENSG00000182450.12 protein_coding KCNK4 2 OTTHUMG00000168006.2 ncRNA_host,overlapping_locus +15318 chr11 HAVANA gene 64291722 64304769 2733.0 + 0 ENSG00000257069.6 processed_transcript KCNK4-TEX40 2 OTTHUMG00000167818.4 ncRNA_host,overlapping_locus +15319 chr11 HAVANA gene 64300391 64304770 1076.0 + 0 ENSG00000219435.5 protein_coding CATSPERZ 2 OTTHUMG00000167820.5 overlapping_locus +15320 chr11 HAVANA gene 64305572 64316743 3030.0 + 0 ENSG00000173153.13 protein_coding ESRRA 2 OTTHUMG00000150641.7 +15321 chr11 HAVANA gene 64316460 64318084 1625.0 - 0 ENSG00000173113.6 protein_coding TRMT112 2 OTTHUMG00000167848.4 +15322 chr11 HAVANA gene 64318088 64321811 893.0 + 0 ENSG00000126432.13 protein_coding PRDX5 2 OTTHUMG00000168805.1 +15323 chr11 HAVANA gene 64325050 64329504 672.0 - 0 ENSG00000236935.1 antisense AP003774.4 2 OTTHUMG00000045125.1 +15324 chr11 ENSEMBL gene 64341849 64341904 56.0 - 0 ENSG00000278359.1 miRNA MIR7155 3 +15325 chr11 HAVANA gene 64340223 64357534 8331.0 + 0 ENSG00000168071.21 protein_coding CCDC88B 2 OTTHUMG00000045419.5 +15326 chr11 ENSEMBL gene 64368602 64368703 102.0 + 0 ENSG00000221273.1 miRNA MIR1237 3 +15327 chr11 HAVANA gene 64359148 64372215 3807.0 + 0 ENSG00000162302.12 protein_coding RPS6KA4 2 OTTHUMG00000046094.3 ncRNA_host +15328 chr11 HAVANA gene 64394342 64395831 985.0 - 0 ENSG00000231680.1 lincRNA AP003774.3 1 OTTHUMG00000150041.1 +15329 chr11 HAVANA gene 64420391 64432670 872.0 + 0 ENSG00000231492.2 lincRNA AP003774.2 2 OTTHUMG00000066368.2 +15330 chr11 HAVANA gene 64449074 64451657 2340.0 + 0 ENSG00000181908.5 lincRNA AP003774.1 1 OTTHUMG00000046124.3 +15331 chr11 HAVANA gene 64500853 64505386 522.0 + 0 ENSG00000232500.1 lincRNA AP005273.1 1 OTTHUMG00000066367.1 +15332 chr11 HAVANA gene 64531044 64532970 395.0 + 0 ENSG00000237363.1 unprocessed_pseudogene AP006288.1 2 OTTHUMG00000132185.1 +15333 chr11 HAVANA gene 64555626 64572875 5222.0 + 0 ENSG00000168065.15 protein_coding SLC22A11 1 OTTHUMG00000045142.6 +15334 chr11 HAVANA gene 64590641 64602353 3380.0 + 0 ENSG00000197891.11 protein_coding SLC22A12 1 OTTHUMG00000045213.5 +15335 chr11 HAVANA gene 64646399 64659681 469.0 + 0 ENSG00000237410.1 antisense AP001092.1 1 OTTHUMG00000133666.1 +15336 chr11 HAVANA gene 64606174 64723188 10580.0 - 0 ENSG00000110076.18 protein_coding NRXN2 2 OTTHUMG00000045214.18 +15337 chr11 HAVANA gene 64726911 64745456 6084.0 - 0 ENSG00000068831.18 protein_coding RASGRP2 2 OTTHUMG00000045420.37 +15338 chr11 HAVANA gene 64746389 64760297 4981.0 - 0 ENSG00000068976.13 protein_coding PYGM 2 OTTHUMG00000066835.2 +15339 chr11 HAVANA gene 64764606 64778786 5972.0 - 0 ENSG00000168066.20 protein_coding SF1 1 OTTHUMG00000066833.14 +15340 chr11 HAVANA gene 64778954 64779405 452.0 + 0 ENSG00000269038.1 lincRNA AP001462.1 2 OTTHUMG00000066836.2 +15341 chr11 HAVANA gene 64784914 64803241 7649.0 - 0 ENSG00000168067.11 protein_coding MAP4K2 2 OTTHUMG00000045328.37 +15342 chr11 HAVANA gene 64803510 64811294 4246.0 - 0 ENSG00000133895.14 protein_coding MEN1 1 OTTHUMG00000045366.39 +15343 chr11 HAVANA gene 64823387 64844569 6112.0 - 0 ENSG00000171219.8 protein_coding CDC42BPG 2 OTTHUMG00000045365.5 +15344 chr11 HAVANA gene 64881535 64881945 411.0 + 0 ENSG00000230835.1 processed_pseudogene AP001187.1 1 OTTHUMG00000066830.2 pseudo_consens +15345 chr11 HAVANA gene 64851642 64888296 7101.0 - 0 ENSG00000110047.17 protein_coding EHD1 1 OTTHUMG00000066832.17 +15346 chr11 ENSEMBL gene 64891137 64891246 110.0 - 0 ENSG00000283926.1 miRNA MIR192 3 +15347 chr11 ENSEMBL gene 64891355 64891439 85.0 - 0 ENSG00000284155.1 miRNA MIR194-2 3 +15348 chr11 HAVANA gene 64889560 64893449 3647.0 - 0 ENSG00000229719.5 lincRNA MIR194-2HG 2 OTTHUMG00000066834.2 ncRNA_host +15349 chr11 ENSEMBL gene 64898363 64898437 75.0 - 0 ENSG00000274986.1 miRNA MIR6750 3 +15350 chr11 ENSEMBL gene 64902387 64902455 69.0 - 0 ENSG00000274314.1 miRNA MIR6749 3 +15351 chr11 HAVANA gene 64894546 64917248 7870.0 - 0 ENSG00000110046.12 protein_coding ATG2A 2 OTTHUMG00000066831.2 ncRNA_host +15352 chr11 HAVANA gene 64917553 64934473 3376.0 + 0 ENSG00000068971.13 protein_coding PPP2R5B 1 OTTHUMG00000150043.4 +15353 chr11 HAVANA gene 64934471 64935888 926.0 - 0 ENSG00000149735.6 protein_coding GPHA2 2 OTTHUMG00000165631.1 +15354 chr11 HAVANA gene 64937517 64972085 2301.0 - 0 ENSG00000168070.11 protein_coding MAJIN 1 OTTHUMG00000165632.1 +15355 chr11 HAVANA gene 64987943 64997045 2844.0 - 0 ENSG00000168062.9 protein_coding BATF2 1 OTTHUMG00000165633.3 +15356 chr11 ENSEMBL gene 65018505 65018570 66.0 + 0 ENSG00000278851.1 miRNA MIR6879 3 +15357 chr11 HAVANA gene 65014113 65022184 2084.0 + 0 ENSG00000213465.7 protein_coding ARL2 2 OTTHUMG00000165728.1 ncRNA_host,overlapping_locus +15358 chr11 HAVANA gene 65025390 65026515 800.0 - 0 ENSG00000270775.1 processed_pseudogene AP000436.1 1 OTTHUMG00000184817.1 pseudo_consens +15359 chr11 HAVANA gene 65014182 65040570 2392.0 + 0 ENSG00000273003.1 protein_coding ARL2-SNX15 2 OTTHUMG00000185851.1 ncRNA_host,overlapping_locus +15360 chr11 HAVANA gene 65027408 65040572 4915.0 + 0 ENSG00000110025.12 protein_coding SNX15 1 OTTHUMG00000037387.6 overlapping_locus +15361 chr11 HAVANA gene 65040901 65044828 1772.0 + 0 ENSG00000168061.14 protein_coding SAC3D1 1 OTTHUMG00000165594.1 +15362 chr11 HAVANA gene 65044818 65058549 4044.0 - 0 ENSG00000168060.15 protein_coding NAALADL1 1 OTTHUMG00000165595.2 +15363 chr11 HAVANA gene 65066300 65084164 3925.0 - 0 ENSG00000146670.9 protein_coding CDCA5 2 OTTHUMG00000150420.2 +15364 chr11 HAVANA gene 65084210 65088400 3122.0 + 0 ENSG00000162300.12 protein_coding ZFPL1 1 OTTHUMG00000165597.4 +15365 chr11 HAVANA gene 65084979 65089375 4194.0 - 0 ENSG00000187066.8 protein_coding TMEM262 1 OTTHUMG00000165598.4 +15366 chr11 HAVANA gene 65110714 65111695 544.0 - 0 ENSG00000254501.1 antisense AP003068.1 1 OTTHUMG00000165602.1 +15367 chr11 HAVANA gene 65089324 65111860 4878.0 + 0 ENSG00000149823.8 protein_coding VPS51 1 OTTHUMG00000165600.2 overlapping_locus +15368 chr11 HAVANA gene 65111845 65116384 3408.0 + 0 ENSG00000149809.14 protein_coding TM7SF2 2 OTTHUMG00000165603.2 overlapping_locus +15369 chr11 HAVANA gene 65117157 65117458 175.0 + 0 ENSG00000255173.1 antisense AP003068.3 2 OTTHUMG00000165605.1 +15370 chr11 HAVANA gene 65116403 65117708 1306.0 - 0 ENSG00000174276.6 protein_coding ZNHIT2 2 OTTHUMG00000165604.2 +15371 chr11 HAVANA gene 65118310 65119111 802.0 + 0 ENSG00000278952.1 TEC AP003068.4 2 OTTHUMG00000173022.1 +15372 chr11 HAVANA gene 65120628 65122473 1846.0 - 0 ENSG00000149806.10 protein_coding FAU 2 OTTHUMG00000165606.2 overlapping_locus +15373 chr11 HAVANA gene 65122183 65127371 3080.0 + 0 ENSG00000149792.8 protein_coding MRPL49 1 OTTHUMG00000165608.1 +15374 chr11 ENSEMBL gene 65129916 65129978 63.0 - 0 ENSG00000284489.1 miRNA MIR6751 3 +15375 chr11 HAVANA gene 65121780 65134533 5496.0 - 0 ENSG00000162298.18 protein_coding SYVN1 2 OTTHUMG00000165607.2 ncRNA_host,overlapping_locus +15376 chr11 HAVANA gene 65145691 65145972 282.0 - 0 ENSG00000254455.1 processed_pseudogene HIGD1AP10 1 OTTHUMG00000165609.1 pseudo_consens +15377 chr11 ENSEMBL gene 65147584 65147778 195.0 + 0 ENSG00000222477.1 snRNA RNU2-23P 3 +15378 chr11 HAVANA gene 65160194 65160382 189.0 - 0 ENSG00000255058.1 processed_pseudogene PDCL2P2 1 OTTHUMG00000165610.1 pseudo_consens +15379 chr11 HAVANA gene 65170154 65173244 991.0 + 0 ENSG00000204710.2 protein_coding SPDYC 2 OTTHUMG00000165611.1 +15380 chr11 HAVANA gene 65174117 65176470 2354.0 - 0 ENSG00000255200.1 transcribed_processed_pseudogene PGAM1P8 1 OTTHUMG00000165612.1 pseudo_consens,overlapping_locus +15381 chr11 HAVANA gene 65177606 65181834 1791.0 - 0 ENSG00000254614.2 antisense AP003068.2 2 OTTHUMG00000165613.2 +15382 chr11 HAVANA gene 65180566 65212006 7553.0 + 0 ENSG00000014216.15 protein_coding CAPN1 2 OTTHUMG00000165614.2 +15383 chr11 HAVANA gene 65213840 65242757 3983.0 + 0 ENSG00000197847.12 transcribed_unitary_pseudogene SLC22A20P 2 OTTHUMG00000165615.1 +15384 chr11 HAVANA gene 65261762 65305589 5726.0 + 0 ENSG00000014138.8 protein_coding POLA2 1 OTTHUMG00000193339.1 +15385 chr11 HAVANA gene 65314818 65322429 2224.0 + 0 ENSG00000149798.4 protein_coding CDC42EP2 2 OTTHUMG00000165958.1 +15386 chr11 HAVANA gene 65261928 65326543 4256.0 + 0 ENSG00000285816.1 protein_coding AP000944.2 2 OTTHUMG00000165951.6 +15387 chr11 HAVANA gene 65333754 65353249 7715.0 + 0 ENSG00000133884.9 protein_coding DPF2 1 OTTHUMG00000165985.3 +15388 chr11 HAVANA gene 65354767 65357613 2012.0 + 0 ENSG00000173825.6 protein_coding TIGD3 2 OTTHUMG00000165986.1 +15389 chr11 HAVANA gene 65367438 65375299 564.0 + 0 ENSG00000255478.1 antisense AP000944.1 2 OTTHUMG00000165997.1 +15390 chr11 HAVANA gene 65375192 65383701 7855.0 - 0 ENSG00000162241.12 protein_coding SLC25A45 2 OTTHUMG00000166255.4 +15391 chr11 HAVANA gene 65386599 65413525 4091.0 + 0 ENSG00000126391.13 protein_coding FRMD8 2 OTTHUMG00000166275.3 +15392 chr11 ENSEMBL gene 65423273 65423392 120.0 + 0 ENSG00000278144.1 misc_RNA RF01955 3 +15393 chr11 ENSEMBL gene 65423638 65423742 105.0 + 0 ENSG00000278050.1 misc_RNA RF01956 3 +15394 chr11 ENSEMBL gene 65423960 65424118 159.0 + 0 ENSG00000277599.1 misc_RNA RF01957 3 +15395 chr11 ENSEMBL gene 65444458 65444557 100.0 + 0 ENSG00000283791.1 miRNA MIR612 3 +15396 chr11 HAVANA gene 65422774 65445540 22767.0 + 0 ENSG00000245532.8 lincRNA NEAT1 1 OTTHUMG00000166321.7 ncRNA_host +15397 chr11 ENSEMBL gene 65445541 65445598 58.0 + 0 ENSG00000275948.1 sRNA RF01684 3 +15398 chr11 HAVANA gene 65455258 65466720 1772.0 + 0 ENSG00000173727.12 transcribed_unprocessed_pseudogene AP000769.1 2 OTTHUMG00000186654.3 +15399 chr11 HAVANA gene 65487241 65488228 632.0 - 0 ENSG00000279243.2 lincRNA AP000769.3 2 OTTHUMG00000189231.3 +15400 chr11 HAVANA gene 65498010 65498405 396.0 - 0 ENSG00000270117.1 lincRNA AP000769.2 2 OTTHUMG00000184021.1 +15401 chr11 ENSEMBL gene 65502914 65503008 95.0 + 0 ENSG00000278217.1 misc_RNA RF01871 3 +15402 chr11 ENSEMBL gene 65506117 65506173 57.0 + 0 ENSG00000274072.1 sRNA RF01684 3 +15403 chr11 HAVANA gene 65497688 65506516 8829.0 + 0 ENSG00000251562.8 lincRNA MALAT1 2 OTTHUMG00000166322.5 ncRNA_host +15404 chr11 HAVANA gene 65514403 65514923 189.0 - 0 ENSG00000270526.1 processed_pseudogene SNRPGP19 2 OTTHUMG00000184809.1 +15405 chr11 HAVANA gene 65525077 65538704 4282.0 + 0 ENSG00000142186.16 protein_coding SCYL1 2 OTTHUMG00000166325.5 +15406 chr11 HAVANA gene 65538805 65558930 10298.0 - 0 ENSG00000168056.15 protein_coding LTBP3 1 OTTHUMG00000166575.6 +15407 chr11 HAVANA gene 65561484 65561607 124.0 + 0 ENSG00000279093.1 TEC AP001362.1 2 OTTHUMG00000172937.1 +15408 chr11 HAVANA gene 65568482 65570423 1942.0 - 0 ENSG00000260233.3 processed_transcript SSSCA1-AS1 2 OTTHUMG00000166387.2 +15409 chr11 HAVANA gene 65570430 65573942 2008.0 + 0 ENSG00000173465.7 protein_coding SSSCA1 1 OTTHUMG00000166388.2 overlapping_locus +15410 chr11 HAVANA gene 65572349 65574198 1458.0 + 0 ENSG00000176973.7 protein_coding FAM89B 2 OTTHUMG00000166499.1 overlapping_locus +15411 chr11 HAVANA gene 65576038 65592650 6741.0 + 0 ENSG00000173442.12 protein_coding EHBP1L1 2 OTTHUMG00000166520.4 +15412 chr11 HAVANA gene 65592855 65595996 1563.0 - 0 ENSG00000173338.12 protein_coding KCNK7 2 OTTHUMG00000166528.1 +15413 chr11 HAVANA gene 65597755 65615382 10564.0 - 0 ENSG00000173327.7 protein_coding MAP3K11 1 OTTHUMG00000166529.4 +15414 chr11 ENSEMBL gene 65636310 65636369 60.0 + 0 ENSG00000266041.1 miRNA MIR4690 3 +15415 chr11 HAVANA gene 65615773 65637439 7972.0 + 0 ENSG00000197136.4 protein_coding PCNX3 1 OTTHUMG00000166539.2 ncRNA_host +15416 chr11 ENSEMBL gene 65649192 65649253 62.0 + 0 ENSG00000265874.1 miRNA MIR4489 3 +15417 chr11 HAVANA gene 65638097 65650930 4668.0 + 0 ENSG00000213445.9 protein_coding SIPA1 1 OTTHUMG00000166541.2 ncRNA_host +15418 chr11 HAVANA gene 65653596 65663094 5464.0 - 0 ENSG00000173039.18 protein_coding RELA 2 OTTHUMG00000166566.7 +15419 chr11 HAVANA gene 65663086 65671716 824.0 + 0 ENSG00000285533.1 lincRNA AP001362.2 2 OTTHUMG00000193144.1 +15420 chr11 ENSEMBL gene 65695552 65695837 286.0 + 0 ENSG00000239356.3 misc_RNA RN7SL309P 3 +15421 chr11 HAVANA gene 65711996 65719604 3732.0 + 0 ENSG00000172977.12 protein_coding KAT5 1 OTTHUMG00000166617.4 +15422 chr11 HAVANA gene 65714005 65720947 5101.0 - 0 ENSG00000172922.9 protein_coding RNASEH2C 2 OTTHUMG00000166601.4 +15423 chr11 HAVANA gene 65726939 65728214 1276.0 + 0 ENSG00000214659.4 processed_pseudogene KRT8P26 1 OTTHUMG00000166591.1 pseudo_consens +15424 chr11 HAVANA gene 65745729 65771585 464.0 + 0 ENSG00000255557.1 lincRNA AP001266.2 1 OTTHUMG00000166592.1 +15425 chr11 HAVANA gene 65775893 65780802 4811.0 - 0 ENSG00000254470.2 protein_coding AP5B1 2 OTTHUMG00000166593.2 +15426 chr11 HAVANA gene 65789051 65790868 685.0 - 0 ENSG00000255120.5 antisense OVOL1-AS1 2 OTTHUMG00000166597.1 +15427 chr11 HAVANA gene 65795946 65797219 1044.0 - 0 ENSG00000255404.1 antisense AP001266.1 1 OTTHUMG00000166598.1 +15428 chr11 HAVANA gene 65787022 65797219 3849.0 + 0 ENSG00000172818.9 protein_coding OVOL1 2 OTTHUMG00000166600.1 +15429 chr11 HAVANA gene 65833641 65856896 3966.0 + 0 ENSG00000172803.17 protein_coding SNX32 1 OTTHUMG00000128491.3 +15430 chr11 HAVANA gene 65823022 65862026 5863.0 - 0 ENSG00000172757.12 protein_coding CFL1 1 OTTHUMG00000166602.5 +15431 chr11 HAVANA gene 65857126 65867653 5476.0 + 0 ENSG00000172732.11 protein_coding MUS81 1 OTTHUMG00000166633.4 +15432 chr11 HAVANA gene 65866441 65873592 5397.0 - 0 ENSG00000172638.12 protein_coding EFEMP2 1 OTTHUMG00000166664.7 +15433 chr11 HAVANA gene 65879809 65883741 1719.0 + 0 ENSG00000172543.7 protein_coding CTSW 2 OTTHUMG00000166663.2 +15434 chr11 HAVANA gene 65883741 65888539 3353.0 - 0 ENSG00000172500.12 protein_coding FIBP 2 OTTHUMG00000166846.2 +15435 chr11 HAVANA gene 65890112 65891635 1524.0 + 0 ENSG00000175602.3 protein_coding CCDC85B 2 OTTHUMG00000166722.1 +15436 chr11 HAVANA gene 65892049 65900573 1887.0 - 0 ENSG00000175592.8 protein_coding FOSL1 1 OTTHUMG00000166715.4 +15437 chr11 HAVANA gene 65916808 65919117 1761.0 - 0 ENSG00000175573.6 protein_coding C11orf68 2 OTTHUMG00000157153.2 +15438 chr11 HAVANA gene 65919257 65921561 1737.0 + 0 ENSG00000175550.7 protein_coding DRAP1 2 OTTHUMG00000166723.4 +15439 chr11 HAVANA gene 65945445 65959963 2062.0 + 0 ENSG00000175513.9 protein_coding TSGA10IP 2 OTTHUMG00000166753.5 +15440 chr11 HAVANA gene 65961689 65979828 4323.0 + 0 ENSG00000175467.14 protein_coding SART1 2 OTTHUMG00000166771.2 +15441 chr11 HAVANA gene 65983679 65984331 653.0 - 0 ENSG00000254867.1 processed_pseudogene AP006287.1 1 OTTHUMG00000166672.1 pseudo_consens +15442 chr11 HAVANA gene 65996545 66002176 3327.0 - 0 ENSG00000175376.8 protein_coding EIF1AD 1 OTTHUMG00000166671.4 +15443 chr11 HAVANA gene 66002079 66004149 1645.0 + 0 ENSG00000175334.7 protein_coding BANF1 2 OTTHUMG00000166749.2 +15444 chr11 HAVANA gene 66011841 66013505 759.0 + 0 ENSG00000175315.2 protein_coding CST6 2 OTTHUMG00000166750.1 +15445 chr11 HAVANA gene 66016752 66026517 2687.0 - 0 ENSG00000175294.5 protein_coding CATSPER1 2 OTTHUMG00000166668.1 +15446 chr11 HAVANA gene 66041952 66049180 2481.0 - 0 ENSG00000175229.6 protein_coding GAL3ST3 2 OTTHUMG00000166667.1 +15447 chr11 HAVANA gene 66050729 66069308 9795.0 + 0 ENSG00000087365.15 protein_coding SF3B2 1 OTTHUMG00000166751.4 +15448 chr11 HAVANA gene 66067277 66069619 502.0 - 0 ENSG00000255038.1 antisense AP006287.2 1 OTTHUMG00000166666.1 +15449 chr11 HAVANA gene 66070363 66244747 9037.0 + 0 ENSG00000175115.11 protein_coding PACS1 1 OTTHUMG00000166889.4 +15450 chr11 HAVANA gene 66244840 66246239 397.0 - 0 ENSG00000255320.1 antisense AP000759.1 2 OTTHUMG00000166866.1 +15451 chr11 HAVANA gene 66259567 66261834 539.0 - 0 ENSG00000254461.1 antisense AP001107.4 1 OTTHUMG00000166904.1 +15452 chr11 HAVANA gene 66264777 66265666 479.0 - 0 ENSG00000254855.1 antisense AP001107.8 2 OTTHUMG00000166905.1 +15453 chr11 HAVANA gene 66257294 66267860 5479.0 + 0 ENSG00000174996.11 protein_coding KLC2 2 OTTHUMG00000133757.5 +15454 chr11 HAVANA gene 66267635 66268129 272.0 - 0 ENSG00000254762.1 antisense AP001107.7 2 OTTHUMG00000166906.1 +15455 chr11 HAVANA gene 66276779 66277492 589.0 - 0 ENSG00000254452.1 antisense AP001107.2 2 OTTHUMG00000166908.1 overlapping_locus +15456 chr11 HAVANA gene 66268533 66277492 2007.0 + 0 ENSG00000174903.15 protein_coding RAB1B 2 OTTHUMG00000166916.2 +15457 chr11 HAVANA gene 66269832 66278525 2792.0 - 0 ENSG00000245156.1 lincRNA AP001107.1 2 OTTHUMG00000166907.1 overlapping_locus +15458 chr11 HAVANA gene 66278190 66285301 2069.0 + 0 ENSG00000174871.10 protein_coding CNIH2 2 OTTHUMG00000166919.1 +15459 chr11 HAVANA gene 66284580 66289170 2370.0 - 0 ENSG00000174851.15 protein_coding YIF1A 1 OTTHUMG00000102079.6 +15460 chr11 HAVANA gene 66291870 66296664 2562.0 + 0 ENSG00000179292.4 protein_coding TMEM151A 2 OTTHUMG00000166920.1 +15461 chr11 HAVANA gene 66314487 66317044 2558.0 - 0 ENSG00000174807.3 protein_coding CD248 2 OTTHUMG00000167073.2 +15462 chr11 HAVANA gene 66312853 66319237 544.0 + 0 ENSG00000254458.1 antisense AP001107.3 1 OTTHUMG00000167072.1 +15463 chr11 HAVANA gene 66330242 66336840 5469.0 - 0 ENSG00000174791.10 protein_coding RIN1 1 OTTHUMG00000167085.2 +15464 chr11 HAVANA gene 66334494 66339875 516.0 + 0 ENSG00000254756.1 antisense AP001107.6 1 OTTHUMG00000167074.1 +15465 chr11 HAVANA gene 66337333 66345125 2514.0 - 0 ENSG00000174744.13 protein_coding BRMS1 2 OTTHUMG00000167081.2 +15466 chr11 HAVANA gene 66345372 66347692 2072.0 - 0 ENSG00000174684.6 protein_coding B4GAT1 2 OTTHUMG00000167082.1 +15467 chr11 HAVANA gene 66347950 66364804 1540.0 + 0 ENSG00000255468.7 antisense AP001107.9 1 OTTHUMG00000166921.5 +15468 chr11 HAVANA gene 66362521 66372214 2720.0 - 0 ENSG00000174669.11 protein_coding SLC29A2 2 OTTHUMG00000169056.1 +15469 chr11 ENSEMBL gene 66374138 66374435 298.0 - 0 ENSG00000276918.1 misc_RNA RF00017 3 +15470 chr11 HAVANA gene 66389609 66390168 560.0 + 0 ENSG00000254736.1 processed_pseudogene BRD9P1 1 OTTHUMG00000166923.1 pseudo_consens +15471 chr11 ENSEMBL gene 66393449 66393612 164.0 + 0 ENSG00000202317.1 snRNA RNU1-84P 3 +15472 chr11 HAVANA gene 66409158 66417137 1330.0 + 0 ENSG00000254510.1 processed_transcript AP001107.5 2 OTTHUMG00000166924.1 +15473 chr11 HAVANA gene 66421004 66426707 3428.0 + 0 ENSG00000174576.9 protein_coding NPAS4 2 OTTHUMG00000167045.1 +15474 chr11 ENSEMBL gene 66432763 66432902 140.0 + 0 ENSG00000201733.1 snoRNA RF00416 3 +15475 chr11 HAVANA gene 66454234 66454581 348.0 + 0 ENSG00000254596.1 processed_pseudogene AP002748.2 1 OTTHUMG00000167108.1 pseudo_consens +15476 chr11 HAVANA gene 66435075 66466738 2539.0 - 0 ENSG00000174547.13 protein_coding MRPL11 1 OTTHUMG00000167097.2 +15477 chr11 HAVANA gene 66466327 66477337 3926.0 + 0 ENSG00000174516.14 protein_coding PELI3 1 OTTHUMG00000167109.2 +15478 chr11 HAVANA gene 66473490 66480233 2057.0 - 0 ENSG00000255517.6 antisense AP002748.3 1 OTTHUMG00000167095.2 +15479 chr11 HAVANA gene 66480013 66509657 3977.0 + 0 ENSG00000254986.7 protein_coding DPP3 1 OTTHUMG00000167143.6 overlapping_locus +15480 chr11 HAVANA gene 66509079 66533613 3547.0 + 0 ENSG00000256349.1 protein_coding AP002748.4 2 OTTHUMG00000167719.2 overlapping_locus +15481 chr11 HAVANA gene 66510606 66533627 6145.0 + 0 ENSG00000174483.19 protein_coding BBS1 1 OTTHUMG00000167110.6 overlapping_locus +15482 chr11 HAVANA gene 66520637 66546238 6266.0 - 0 ENSG00000174165.7 protein_coding ZDHHC24 1 OTTHUMG00000167096.3 +15483 chr11 HAVANA gene 66558866 66560384 580.0 - 0 ENSG00000250105.1 lincRNA AP002748.1 1 OTTHUMG00000160821.1 +15484 chr11 HAVANA gene 66546395 66563329 3517.0 + 0 ENSG00000248746.5 protein_coding ACTN3 2 OTTHUMG00000160815.3 +15485 chr11 HAVANA gene 66563463 66568841 2896.0 - 0 ENSG00000174080.10 protein_coding CTSF 2 OTTHUMG00000167090.3 +15486 chr11 HAVANA gene 66590176 66593083 2908.0 - 0 ENSG00000182791.4 protein_coding CCDC87 2 OTTHUMG00000167237.1 +15487 chr11 HAVANA gene 66592821 66606019 2474.0 + 0 ENSG00000173992.8 protein_coding CCS 2 OTTHUMG00000167238.2 +15488 chr11 ENSEMBL gene 66614964 66615090 127.0 - 0 ENSG00000199325.1 snRNA RNU4-39P 3 +15489 chr11 HAVANA gene 66616582 66627347 3937.0 + 0 ENSG00000239306.4 protein_coding RBM14 1 OTTHUMG00000140380.5 overlapping_locus +15490 chr11 HAVANA gene 66616626 66646469 2577.0 + 0 ENSG00000248643.5 protein_coding RBM14-RBM4 1 OTTHUMG00000160813.4 overlapping_locus +15491 chr11 HAVANA gene 66638617 66668374 6589.0 + 0 ENSG00000173933.20 protein_coding RBM4 1 OTTHUMG00000154171.7 overlapping_locus +15492 chr11 HAVANA gene 66664998 66677921 4325.0 - 0 ENSG00000173914.11 protein_coding RBM4B 1 OTTHUMG00000167243.3 +15493 chr11 ENSEMBL gene 66712720 66713009 290.0 - 0 ENSG00000239553.3 misc_RNA RN7SL12P 3 +15494 chr11 HAVANA gene 66685248 66729226 9137.0 - 0 ENSG00000173898.12 protein_coding SPTBN2 2 OTTHUMG00000167262.4 ncRNA_host +15495 chr11 HAVANA gene 66761575 66762399 825.0 - 0 ENSG00000213409.4 processed_pseudogene C1QBPP2 1 OTTHUMG00000167165.1 pseudo_consens +15496 chr11 HAVANA gene 66771246 66771667 422.0 - 0 ENSG00000254984.1 processed_pseudogene FTLP6 2 OTTHUMG00000167166.1 +15497 chr11 HAVANA gene 66744451 66843328 3765.0 + 0 ENSG00000173715.16 protein_coding C11orf80 1 OTTHUMG00000167164.11 overlapping_locus +15498 chr11 HAVANA gene 66842835 66846546 2995.0 + 0 ENSG00000173653.7 protein_coding RCE1 2 OTTHUMG00000167098.1 overlapping_locus +15499 chr11 HAVANA gene 66856647 66860475 2828.0 + 0 ENSG00000173621.8 protein_coding LRFN4 1 OTTHUMG00000167100.2 +15500 chr11 ENSEMBL gene 66919762 66919823 62.0 + 0 ENSG00000239099.1 snRNA RNU7-23P 3 +15501 chr11 ENSEMBL gene 66934434 66934506 73.0 - 0 ENSG00000266423.1 miRNA MIR3163 3 +15502 chr11 HAVANA gene 66848233 66958376 5927.0 - 0 ENSG00000173599.13 protein_coding PC 2 OTTHUMG00000167099.1 ncRNA_host +15503 chr11 HAVANA gene 66975277 66977004 1187.0 + 0 ENSG00000173237.4 protein_coding C11orf86 2 OTTHUMG00000153671.2 +15504 chr11 ENSEMBL gene 67045643 67045708 66.0 + 0 ENSG00000283326.1 miRNA MIR6860 3 +15505 chr11 HAVANA gene 67006778 67050863 10830.0 + 0 ENSG00000173227.13 protein_coding SYT12 2 OTTHUMG00000167101.2 ncRNA_host +15506 chr11 HAVANA gene 67056818 67072013 1265.0 + 0 ENSG00000173156.6 protein_coding RHOD 1 OTTHUMG00000167102.4 +15507 chr11 HAVANA gene 67195569 67197167 1599.0 - 0 ENSG00000179038.8 transcribed_processed_pseudogene AP001885.1 1 OTTHUMG00000187455.1 pseudo_consens +15508 chr11 HAVANA gene 67119269 67258087 10380.0 + 0 ENSG00000173120.14 protein_coding KDM2A 1 OTTHUMG00000167103.2 +15509 chr11 HAVANA gene 67266410 67286556 6665.0 + 0 ENSG00000173020.10 protein_coding GRK2 2 OTTHUMG00000167104.1 +15510 chr11 HAVANA gene 67288547 67302485 6643.0 + 0 ENSG00000172932.14 protein_coding ANKRD13D 2 OTTHUMG00000162929.4 +15511 chr11 HAVANA gene 67303448 67312607 3641.0 + 0 ENSG00000172830.12 protein_coding SSH3 2 OTTHUMG00000167105.3 +15512 chr11 HAVANA gene 67353629 67354348 527.0 + 0 ENSG00000274251.1 lincRNA AP003419.2 2 OTTHUMG00000188152.1 +15513 chr11 HAVANA gene 67350777 67356972 3049.0 - 0 ENSG00000175482.8 protein_coding POLD4 1 OTTHUMG00000167135.4 overlapping_locus +15514 chr11 ENSEMBL gene 67362414 67362708 295.0 + 0 ENSG00000201684.1 misc_RNA RN7SKP239 3 +15515 chr11 HAVANA gene 67351572 67373584 711.0 - 0 ENSG00000256514.1 protein_coding AP003419.1 2 OTTHUMG00000167774.2 overlapping_locus +15516 chr11 HAVANA gene 67364168 67374177 1975.0 - 0 ENSG00000175505.10 protein_coding CLCF1 2 OTTHUMG00000167669.1 overlapping_locus +15517 chr11 HAVANA gene 67374416 67374932 517.0 + 0 ENSG00000275484.1 lincRNA AP003419.3 2 OTTHUMG00000188153.1 +15518 chr11 ENSEMBL gene 67395210 67395311 102.0 - 0 ENSG00000253024.1 snRNA RNU6-1238P 3 +15519 chr11 HAVANA gene 67317871 67398410 4169.0 + 0 ENSG00000172613.7 protein_coding RAD9A 2 OTTHUMG00000167670.7 ncRNA_host +15520 chr11 HAVANA gene 67403915 67410089 4993.0 + 0 ENSG00000175463.11 protein_coding TBC1D10C 2 OTTHUMG00000167139.3 +15521 chr11 HAVANA gene 67398183 67421183 2711.0 - 0 ENSG00000172531.14 protein_coding PPP1CA 2 OTTHUMG00000167671.4 +15522 chr11 HAVANA gene 67414968 67425607 5670.0 + 0 ENSG00000172508.10 protein_coding CARNS1 2 OTTHUMG00000167672.1 +15523 chr11 HAVANA gene 67431367 67435399 470.0 - 0 ENSG00000255949.1 antisense RPS6KB2-AS1 1 OTTHUMG00000168038.1 +15524 chr11 HAVANA gene 67428460 67435408 5822.0 + 0 ENSG00000175634.14 protein_coding RPS6KB2 1 OTTHUMG00000167673.8 +15525 chr11 HAVANA gene 67435510 67438067 1292.0 - 0 ENSG00000213402.2 protein_coding PTPRCAP 2 OTTHUMG00000150325.1 overlapping_locus +15526 chr11 HAVANA gene 67435510 67443821 5327.0 - 0 ENSG00000172725.13 protein_coding CORO1B 2 OTTHUMG00000167775.3 overlapping_locus +15527 chr11 HAVANA gene 67451301 67452729 1429.0 - 0 ENSG00000175514.2 protein_coding GPR152 2 OTTHUMG00000168032.1 +15528 chr11 HAVANA gene 67452406 67460313 3786.0 + 0 ENSG00000175544.13 protein_coding CABP4 1 OTTHUMG00000168033.4 +15529 chr11 HAVANA gene 67461710 67469272 5892.0 - 0 ENSG00000172663.8 protein_coding TMEM134 2 OTTHUMG00000168034.4 +15530 chr11 ENSEMBL gene 67490245 67490315 71.0 + 0 ENSG00000276769.1 miRNA MIR6752 3 +15531 chr11 HAVANA gene 67483041 67491103 1640.0 + 0 ENSG00000110711.9 protein_coding AIP 1 OTTHUMG00000167674.4 ncRNA_host +15532 chr11 HAVANA gene 67491768 67506263 6449.0 - 0 ENSG00000110697.12 protein_coding PITPNM1 1 OTTHUMG00000167675.3 +15533 chr11 HAVANA gene 67506497 67508649 2019.0 - 0 ENSG00000167797.7 protein_coding CDK2AP2 2 OTTHUMG00000167676.1 +15534 chr11 HAVANA gene 67518912 67524517 1302.0 - 0 ENSG00000167791.13 protein_coding CABP2 1 OTTHUMG00000168014.5 +15535 chr11 HAVANA gene 67538899 67540584 376.0 + 0 ENSG00000283257.1 unprocessed_pseudogene AP001184.1 2 OTTHUMG00000191769.1 +15536 chr11 HAVANA gene 67583595 67586656 1911.0 + 0 ENSG00000084207.16 protein_coding GSTP1 2 OTTHUMG00000137430.3 +15537 chr11 HAVANA gene 67605521 67606642 555.0 + 0 ENSG00000255119.1 antisense AP003385.3 1 OTTHUMG00000167300.1 +15538 chr11 HAVANA gene 67602880 67606706 2434.0 - 0 ENSG00000184224.3 lincRNA C11orf72 2 OTTHUMG00000156309.2 +15539 chr11 HAVANA gene 67605653 67612554 5057.0 + 0 ENSG00000167792.12 protein_coding NDUFV1 1 OTTHUMG00000166215.7 +15540 chr11 HAVANA gene 67612651 67616257 3146.0 - 0 ENSG00000231793.5 transcribed_unitary_pseudogene DOC2GP 2 OTTHUMG00000154229.2 +15541 chr11 HAVANA gene 67627938 67629930 1475.0 - 0 ENSG00000167799.9 protein_coding NUDT8 2 OTTHUMG00000167292.1 +15542 chr11 HAVANA gene 67631303 67639560 1548.0 - 0 ENSG00000167800.9 protein_coding TBX10 2 OTTHUMG00000167291.1 +15543 chr11 HAVANA gene 67642555 67650659 1300.0 - 0 ENSG00000132744.7 protein_coding ACY3 1 OTTHUMG00000167283.1 +15544 chr11 HAVANA gene 67651576 67653404 893.0 - 0 ENSG00000227834.1 processed_pseudogene AP003385.1 2 OTTHUMG00000154687.1 +15545 chr11 HAVANA gene 67662162 67681200 3235.0 - 0 ENSG00000132746.14 protein_coding ALDH3B2 1 OTTHUMG00000167284.2 +15546 chr11 HAVANA gene 67682772 67683058 287.0 - 0 ENSG00000239559.2 processed_pseudogene RPL37P2 1 OTTHUMG00000158400.2 pseudo_consens +15547 chr11 HAVANA gene 67711702 67716005 699.0 - 0 ENSG00000184795.9 unprocessed_pseudogene UNC93B5 2 OTTHUMG00000167244.1 +15548 chr11 HAVANA gene 67722483 67723455 973.0 - 0 ENSG00000235855.3 unprocessed_pseudogene OR7E145P 1 OTTHUMG00000167245.1 pseudo_consens +15549 chr11 HAVANA gene 67735608 67736559 952.0 - 0 ENSG00000285537.1 transcribed_processed_pseudogene AP003385.5 2 OTTHUMG00000193341.1 +15550 chr11 HAVANA gene 67744322 67744645 324.0 + 0 ENSG00000254883.1 processed_pseudogene AP003385.2 2 OTTHUMG00000167550.1 +15551 chr11 HAVANA gene 67749043 67756968 374.0 - 0 ENSG00000255147.1 transcribed_unprocessed_pseudogene AP003385.4 2 OTTHUMG00000193342.1 +15552 chr11 HAVANA gene 67735600 67784229 2041.0 - 0 ENSG00000254447.3 processed_transcript OR7E11P 2 OTTHUMG00000193340.1 +15553 chr11 HAVANA gene 67785273 67792335 760.0 + 0 ENSG00000227620.4 unprocessed_pseudogene ALG1L8P 2 OTTHUMG00000167242.1 +15554 chr11 HAVANA gene 67791648 67805336 3402.0 - 0 ENSG00000160172.10 transcribed_unprocessed_pseudogene FAM86C2P 2 OTTHUMG00000167222.2 +15555 chr11 HAVANA gene 67840942 67841049 108.0 + 0 ENSG00000254792.1 processed_pseudogene AP003716.2 2 OTTHUMG00000167556.1 +15556 chr11 HAVANA gene 67812557 67873367 1102.0 - 0 ENSG00000273819.1 unprocessed_pseudogene ENPP7P7 2 OTTHUMG00000187771.1 +15557 chr11 ENSEMBL gene 67895631 67895737 107.0 + 0 ENSG00000206587.1 snRNA RNU6-46P 3 +15558 chr11 HAVANA gene 67886477 67906350 3962.0 + 0 ENSG00000251637.6 lincRNA AP003716.1 1 OTTHUMG00000167223.3 ncRNA_host +15559 chr11 HAVANA gene 67925651 67926431 781.0 - 0 ENSG00000243672.1 processed_pseudogene RPS3AP40 1 OTTHUMG00000158401.2 pseudo_consens +15560 chr11 HAVANA gene 67935558 67935926 369.0 + 0 ENSG00000254850.2 processed_pseudogene AC004923.2 1 OTTHUMG00000167557.2 pseudo_consens +15561 chr11 HAVANA gene 67934563 67955802 776.0 - 0 ENSG00000254610.3 transcribed_unprocessed_pseudogene AC004923.1 1 OTTHUMG00000167303.4 +15562 chr11 HAVANA gene 67965873 67966227 355.0 - 0 ENSG00000255230.1 processed_pseudogene AC004923.3 1 OTTHUMG00000167561.1 pseudo_consens +15563 chr11 HAVANA gene 67974286 67975243 958.0 - 0 ENSG00000255554.1 unprocessed_pseudogene OR7E1P 1 OTTHUMG00000167471.1 pseudo_consens +15564 chr11 HAVANA gene 67991104 68004982 3548.0 - 0 ENSG00000110057.7 protein_coding UNC93B1 1 OTTHUMG00000167472.4 +15565 chr11 HAVANA gene 68008578 68029282 6626.0 + 0 ENSG00000006534.15 protein_coding ALDH3B1 2 OTTHUMG00000154910.7 +15566 chr11 HAVANA gene 68024809 68030461 739.0 - 0 ENSG00000255306.1 antisense AC004923.4 2 OTTHUMG00000167301.1 +15567 chr11 ENSEMBL gene 68032864 68032922 59.0 + 0 ENSG00000284293.1 miRNA MIR7113 3 +15568 chr11 ENSEMBL gene 68033897 68033981 85.0 + 0 ENSG00000284435.1 miRNA MIR4691 3 +15569 chr11 HAVANA gene 68030617 68036644 4523.0 + 0 ENSG00000110717.12 protein_coding NDUFS8 1 OTTHUMG00000167331.3 ncRNA_host +15570 chr11 ENSEMBL gene 68044794 68044957 164.0 + 0 ENSG00000275022.1 miRNA MIR6753 3 +15571 chr11 HAVANA gene 68039016 68050895 4384.0 + 0 ENSG00000110719.9 protein_coding TCIRG1 1 OTTHUMG00000167358.5 ncRNA_host,overlapping_locus +15572 chr11 HAVANA gene 68050740 68053762 1209.0 + 0 ENSG00000255031.5 antisense AP002807.1 1 OTTHUMG00000167383.2 overlapping_locus +15573 chr11 HAVANA gene 68052859 68121444 3877.0 - 0 ENSG00000110721.11 protein_coding CHKA 1 OTTHUMG00000167424.4 +15574 chr11 HAVANA gene 68122053 68130518 776.0 + 0 ENSG00000255236.2 antisense AP002992.1 1 OTTHUMG00000167388.2 +15575 chr11 HAVANA gene 68154863 68213828 8632.0 - 0 ENSG00000110066.14 protein_coding KMT5B 1 OTTHUMG00000150484.7 +15576 chr11 HAVANA gene 68261335 68272001 3406.0 - 0 ENSG00000171067.10 protein_coding C11orf24 1 OTTHUMG00000167478.2 +15577 chr11 HAVANA gene 68312609 68449275 6164.0 + 0 ENSG00000162337.11 protein_coding LRP5 1 OTTHUMG00000167570.1 +15578 chr11 HAVANA gene 68488609 68488840 232.0 - 0 ENSG00000254856.1 processed_pseudogene NDUFA3P2 1 OTTHUMG00000167668.1 pseudo_consens +15579 chr11 HAVANA gene 68460731 68615334 8305.0 + 0 ENSG00000110075.14 protein_coding PPP6R3 1 OTTHUMG00000167596.6 +15580 chr11 HAVANA gene 68612899 68616711 1094.0 - 0 ENSG00000260808.1 lincRNA AP003096.1 2 OTTHUMG00000173013.1 +15581 chr11 HAVANA gene 68683779 68691175 1300.0 + 0 ENSG00000069482.6 protein_coding GAL 2 OTTHUMG00000167890.2 +15582 chr11 HAVANA gene 68707440 68751564 5833.0 - 0 ENSG00000132749.10 protein_coding TESMIN 1 OTTHUMG00000167891.2 +15583 chr11 HAVANA gene 68754620 68844410 6565.0 - 0 ENSG00000110090.12 protein_coding CPT1A 1 OTTHUMG00000167892.5 +15584 chr11 HAVANA gene 68870664 68874542 3252.0 + 0 ENSG00000250508.1 lincRNA AP000808.1 2 OTTHUMG00000173014.1 +15585 chr11 HAVANA gene 68891276 68903835 2825.0 - 0 ENSG00000197345.12 protein_coding MRPL21 2 OTTHUMG00000167893.3 +15586 chr11 HAVANA gene 68903842 68940602 6465.0 + 0 ENSG00000132740.8 protein_coding IGHMBP2 1 OTTHUMG00000167894.2 +15587 chr11 HAVANA gene 68941503 68942852 569.0 - 0 ENSG00000255741.1 antisense AP000808.2 2 OTTHUMG00000167895.1 +15588 chr11 HAVANA gene 68980021 68980986 966.0 - 0 ENSG00000172938.3 protein_coding MRGPRD 2 OTTHUMG00000167896.2 +15589 chr11 HAVANA gene 69000765 69002048 1284.0 - 0 ENSG00000261625.1 sense_overlapping AP003071.4 2 OTTHUMG00000172938.1 +15590 chr11 HAVANA gene 69004394 69005100 366.0 + 0 ENSG00000261276.1 antisense AP003071.3 2 OTTHUMG00000172939.1 +15591 chr11 HAVANA gene 69004395 69013409 2746.0 - 0 ENSG00000172935.8 protein_coding MRGPRF 2 OTTHUMG00000167897.1 +15592 chr11 HAVANA gene 69012283 69018447 2137.0 + 0 ENSG00000256508.2 antisense MRGPRF-AS1 2 OTTHUMG00000172940.1 +15593 chr11 ENSEMBL gene 69083176 69083258 83.0 + 0 ENSG00000265539.1 miRNA MIR3164 3 +15594 chr11 HAVANA gene 69103493 69109094 622.0 + 0 ENSG00000260895.1 lincRNA AP003071.1 2 OTTHUMG00000172941.1 +15595 chr11 HAVANA gene 69155478 69159752 2900.0 + 0 ENSG00000284713.1 protein_coding AP003071.5 2 OTTHUMG00000172974.2 overlapping_locus +15596 chr11 HAVANA gene 69048897 69162440 10283.0 + 0 ENSG00000162341.16 protein_coding TPCN2 1 OTTHUMG00000167898.4 ncRNA_host,overlapping_locus +15597 chr11 HAVANA gene 69147228 69171564 990.0 - 0 ENSG00000261070.1 lincRNA AP003071.2 2 OTTHUMG00000172973.1 +15598 chr11 HAVANA gene 69303412 69303807 396.0 - 0 ENSG00000213275.2 processed_pseudogene IFITM9P 1 OTTHUMG00000167860.1 pseudo_consens +15599 chr11 HAVANA gene 69294138 69367726 3760.0 + 0 ENSG00000172927.7 protein_coding MYEOV 2 OTTHUMG00000167836.4 +15600 chr11 HAVANA gene 69371463 69372512 372.0 + 0 ENSG00000260877.2 lincRNA AP005233.2 2 OTTHUMG00000175507.2 +15601 chr11 HAVANA gene 69414307 69416832 2424.0 + 0 ENSG00000259854.1 lincRNA AP005233.1 2 OTTHUMG00000175508.1 +15602 chr11 HAVANA gene 69425690 69429621 2376.0 + 0 ENSG00000255980.1 lincRNA AP000439.3 2 OTTHUMG00000168000.1 +15603 chr11 HAVANA gene 69438365 69444743 581.0 - 0 ENSG00000255606.1 lincRNA AP000439.1 2 OTTHUMG00000168001.1 +15604 chr11 HAVANA gene 69467598 69469705 664.0 + 0 ENSG00000261347.1 lincRNA AP000439.4 2 OTTHUMG00000175569.1 +15605 chr11 HAVANA gene 69475567 69481545 2412.0 - 0 ENSG00000255774.2 lincRNA AP000439.2 2 OTTHUMG00000168002.2 +15606 chr11 HAVANA gene 69481662 69494952 4902.0 + 0 ENSG00000285094.1 lincRNA LINC01488 2 OTTHUMG00000192568.1 +15607 chr11 HAVANA gene 69641087 69654474 4830.0 + 0 ENSG00000110092.3 protein_coding CCND1 1 OTTHUMG00000167877.3 +15608 chr11 HAVANA gene 69653076 69675416 7872.0 - 0 ENSG00000149716.12 protein_coding LTO1 1 OTTHUMG00000167885.6 +15609 chr11 HAVANA gene 69698232 69704642 2447.0 - 0 ENSG00000162344.3 protein_coding FGF19 2 OTTHUMG00000167886.1 +15610 chr11 HAVANA gene 69737298 69738017 720.0 - 0 ENSG00000256441.1 processed_pseudogene AP001888.1 1 OTTHUMG00000168003.1 pseudo_consens +15611 chr11 HAVANA gene 69771016 69775403 3233.0 - 0 ENSG00000075388.3 protein_coding FGF4 2 OTTHUMG00000167887.3 +15612 chr11 HAVANA gene 69809969 69819024 1214.0 - 0 ENSG00000186895.3 protein_coding FGF3 2 OTTHUMG00000167888.3 +15613 chr11 HAVANA gene 69909184 69910994 385.0 - 0 ENSG00000260348.1 lincRNA AP007216.1 2 OTTHUMG00000175910.1 +15614 chr11 HAVANA gene 69921638 69926813 299.0 - 0 ENSG00000260679.1 lincRNA AP007216.2 2 OTTHUMG00000175911.1 +15615 chr11 HAVANA gene 69985876 70015815 432.0 + 0 ENSG00000255191.1 lincRNA AP003555.3 1 OTTHUMG00000167159.1 +15616 chr11 HAVANA gene 70014858 70021059 679.0 - 0 ENSG00000254605.1 lincRNA AP003555.2 1 OTTHUMG00000167160.1 +15617 chr11 HAVANA gene 70056230 70065371 1995.0 - 0 ENSG00000248844.6 lincRNA AP003555.1 2 OTTHUMG00000167161.1 +15618 chr11 HAVANA gene 70072434 70075433 1004.0 - 0 ENSG00000254417.1 antisense LINC02584 2 OTTHUMG00000167162.1 +15619 chr11 ENSEMBL gene 70075363 70075469 107.0 + 0 ENSG00000202070.1 snRNA RNU6-1175P 3 +15620 chr11 HAVANA gene 70129297 70149623 497.0 + 0 ENSG00000255143.1 sense_overlapping AP000879.2 2 OTTHUMG00000167197.2 overlapping_locus +15621 chr11 HAVANA gene 70187788 70188509 646.0 - 0 ENSG00000254902.1 antisense ANO1-AS1 2 OTTHUMG00000167205.1 +15622 chr11 HAVANA gene 70078302 70189528 6021.0 + 0 ENSG00000131620.17 protein_coding ANO1 1 OTTHUMG00000167204.2 overlapping_locus +15623 chr11 HAVANA gene 70206291 70207390 1011.0 - 0 ENSG00000254721.1 antisense AP000879.1 2 OTTHUMG00000167265.1 +15624 chr11 HAVANA gene 70203163 70207390 1841.0 + 0 ENSG00000168040.4 protein_coding FADD 2 OTTHUMG00000167264.1 +15625 chr11 HAVANA gene 70278921 70279297 377.0 - 0 ENSG00000255329.1 processed_pseudogene H2AFZP4 1 OTTHUMG00000167302.1 pseudo_consens +15626 chr11 ENSEMBL gene 70283955 70284070 116.0 + 0 ENSG00000221333.1 miRNA MIR548K 3 +15627 chr11 HAVANA gene 70319928 70321415 422.0 + 0 ENSG00000254484.1 sense_intronic AP002336.1 1 OTTHUMG00000167267.1 overlapping_locus +15628 chr11 HAVANA gene 70324871 70327209 367.0 - 0 ENSG00000255539.1 antisense AP002336.3 2 OTTHUMG00000167268.1 overlapping_locus +15629 chr11 HAVANA gene 70358198 70358677 394.0 - 0 ENSG00000254495.1 antisense AP000487.2 2 OTTHUMG00000167269.1 overlapping_locus +15630 chr11 HAVANA gene 70282367 70363368 539.0 - 0 ENSG00000254604.1 antisense AP002336.2 2 OTTHUMG00000167273.1 overlapping_locus +15631 chr11 HAVANA gene 70270700 70385312 11704.0 + 0 ENSG00000131626.18 protein_coding PPFIA1 1 OTTHUMG00000167266.7 ncRNA_host,overlapping_locus +15632 chr11 HAVANA gene 70372246 70398488 3078.0 - 0 ENSG00000246889.2 antisense AP000487.1 1 OTTHUMG00000167270.2 +15633 chr11 HAVANA gene 70398404 70436584 6949.0 + 0 ENSG00000085733.15 protein_coding CTTN 1 OTTHUMG00000134307.3 +15634 chr11 HAVANA gene 70477277 70477592 206.0 - 0 ENSG00000227726.1 sense_intronic AP001271.1 2 OTTHUMG00000152739.1 overlapping_locus +15635 chr11 HAVANA gene 70603304 70604859 1556.0 + 0 ENSG00000279459.1 TEC AP001271.2 2 OTTHUMG00000188669.1 +15636 chr11 HAVANA gene 70631094 70635490 2252.0 + 0 ENSG00000226627.1 antisense SHANK2-AS1 1 OTTHUMG00000154610.1 +15637 chr11 HAVANA gene 70646165 70647562 356.0 + 0 ENSG00000236262.1 antisense SHANK2-AS2 1 OTTHUMG00000152738.1 +15638 chr11 ENSEMBL gene 70705167 70705269 103.0 - 0 ENSG00000207196.1 misc_RNA RF00019 3 +15639 chr11 HAVANA gene 70705605 70706068 464.0 - 0 ENSG00000280089.1 TEC AP000590.1 2 OTTHUMG00000188670.1 +15640 chr11 HAVANA gene 70862790 70865115 1683.0 + 0 ENSG00000171671.6 antisense SHANK2-AS3 2 OTTHUMG00000150217.1 +15641 chr11 ENSEMBL gene 70872270 70872368 99.0 - 0 ENSG00000263744.1 miRNA MIR3664 3 +15642 chr11 HAVANA gene 70467856 71252577 18604.0 - 0 ENSG00000162105.18 protein_coding SHANK2 1 OTTHUMG00000154615.8 ncRNA_host,overlapping_locus +15643 chr11 HAVANA gene 71382601 71423423 3496.0 - 0 ENSG00000172900.12 transcribed_unitary_pseudogene FLJ42102 2 OTTHUMG00000155911.2 +15644 chr11 HAVANA gene 71448674 71452157 680.0 + 0 ENSG00000254682.1 antisense AP002387.1 1 OTTHUMG00000167347.1 +15645 chr11 HAVANA gene 71428193 71452868 4160.0 - 0 ENSG00000172893.15 protein_coding DHCR7 1 OTTHUMG00000167346.3 +15646 chr11 ENSEMBL gene 71473503 71473568 66.0 + 0 ENSG00000278349.1 miRNA MIR6754 3 +15647 chr11 HAVANA gene 71506061 71506380 320.0 - 0 ENSG00000254924.2 processed_pseudogene AP000867.2 1 OTTHUMG00000167389.2 pseudo_consens +15648 chr11 HAVANA gene 71453109 71524107 16263.0 + 0 ENSG00000172890.12 protein_coding NADSYN1 2 OTTHUMG00000167375.3 ncRNA_host +15649 chr11 HAVANA gene 71527267 71528674 1408.0 + 0 ENSG00000244411.3 protein_coding KRTAP5-7 2 OTTHUMG00000057570.1 +15650 chr11 HAVANA gene 71538025 71539207 1183.0 + 0 ENSG00000241233.3 protein_coding KRTAP5-8 2 OTTHUMG00000057571.1 +15651 chr11 HAVANA gene 71548418 71549553 1136.0 + 0 ENSG00000254997.3 protein_coding KRTAP5-9 2 OTTHUMG00000167263.2 +15652 chr11 HAVANA gene 71565563 71566738 1176.0 + 0 ENSG00000204572.9 protein_coding KRTAP5-10 2 OTTHUMG00000057585.2 +15653 chr11 HAVANA gene 71568680 71568934 255.0 + 0 ENSG00000248903.1 processed_pseudogene AP000867.1 2 OTTHUMG00000057587.2 +15654 chr11 HAVANA gene 71579728 71579848 121.0 - 0 ENSG00000249387.1 processed_pseudogene KRTAP5-14P 2 OTTHUMG00000057584.1 +15655 chr11 HAVANA gene 71593454 71594382 929.0 + 0 ENSG00000184055.4 unprocessed_pseudogene OR7E87P 1 OTTHUMG00000057593.2 pseudo_consens +15656 chr11 HAVANA gene 71579714 71603353 1522.0 - 0 ENSG00000204571.6 protein_coding KRTAP5-11 2 OTTHUMG00000057586.2 +15657 chr11 HAVANA gene 71603260 71608040 1144.0 + 0 ENSG00000255562.2 transcribed_processed_pseudogene UNC93B6 2 OTTHUMG00000167455.2 +15658 chr11 HAVANA gene 71620020 71621032 1013.0 + 0 ENSG00000255261.1 unprocessed_pseudogene OR7E4P 1 OTTHUMG00000167456.1 pseudo_consens +15659 chr11 HAVANA gene 71629045 71629421 377.0 + 0 ENSG00000255415.1 processed_pseudogene AP000867.3 1 OTTHUMG00000167457.1 pseudo_consens +15660 chr11 HAVANA gene 71639551 71639769 219.0 + 0 ENSG00000284625.1 unprocessed_pseudogene AP000867.4 2 OTTHUMG00000192238.1 +15661 chr11 HAVANA gene 71669520 71670297 778.0 + 0 ENSG00000239481.1 processed_pseudogene RPS3AP41 1 OTTHUMG00000158403.1 pseudo_consens +15662 chr11 HAVANA gene 71690453 71690657 205.0 - 0 ENSG00000254805.1 processed_pseudogene SNRPCP14 2 OTTHUMG00000167459.1 +15663 chr11 HAVANA gene 71701268 71705404 347.0 - 0 ENSG00000254972.1 lincRNA AP003498.1 2 OTTHUMG00000167460.1 +15664 chr11 HAVANA gene 71745331 71747051 1145.0 + 0 ENSG00000285933.1 lincRNA AP003498.2 2 OTTHUMG00000193015.2 +15665 chr11 HAVANA gene 71711740 71781183 1607.0 + 0 ENSG00000255319.5 transcribed_unprocessed_pseudogene ENPP7P8 2 OTTHUMG00000167461.1 +15666 chr11 HAVANA gene 71787510 71801236 2972.0 + 0 ENSG00000158483.15 protein_coding FAM86C1 1 OTTHUMG00000160552.5 +15667 chr11 HAVANA gene 71800541 71804640 549.0 - 0 ENSG00000254978.2 transcribed_unprocessed_pseudogene ALG1L9P 2 OTTHUMG00000167481.1 overlapping_locus +15668 chr11 HAVANA gene 71794363 71818238 3675.0 - 0 ENSG00000248671.7 processed_transcript ALG1L9P 2 OTTHUMG00000167480.2 overlapping_locus +15669 chr11 HAVANA gene 71814045 71821548 3442.0 - 0 ENSG00000214534.5 protein_coding ZNF705E 2 OTTHUMG00000167482.2 overlapping_locus +15670 chr11 HAVANA gene 71833200 71837710 666.0 + 0 ENSG00000184276.2 protein_coding DEFB108B 2 OTTHUMG00000167533.2 +15671 chr11 ENSEMBL gene 71845196 71845245 50.0 - 0 ENSG00000252902.1 rRNA_pseudogene RNA5SP342 3 +15672 chr11 HAVANA gene 71856277 71863658 240.0 + 0 ENSG00000255157.1 transcribed_unprocessed_pseudogene DEFB130C 2 OTTHUMG00000167534.1 +15673 chr11 HAVANA gene 71878453 71884561 213.0 + 0 ENSG00000225805.4 protein_coding DEFB131B 2 OTTHUMG00000167536.3 +15674 chr11 HAVANA gene 71893410 71894433 1024.0 + 0 ENSG00000228915.3 unprocessed_pseudogene OR7E128P 1 OTTHUMG00000167537.1 pseudo_consens +15675 chr11 HAVANA gene 71903194 71904081 888.0 + 0 ENSG00000254593.1 unprocessed_pseudogene OR7E126P 2 OTTHUMG00000167538.1 +15676 chr11 HAVANA gene 71865509 71928654 3651.0 - 0 ENSG00000254469.7 protein_coding AP002495.1 1 OTTHUMG00000167535.5 +15677 chr11 HAVANA gene 71938671 71939544 560.0 - 0 ENSG00000255296.1 processed_pseudogene AP002490.2 1 OTTHUMG00000167539.1 pseudo_consens +15678 chr11 HAVANA gene 71928701 71997597 3567.0 + 0 ENSG00000137522.17 protein_coding RNF121 1 OTTHUMG00000157023.3 +15679 chr11 HAVANA gene 71998541 72005715 4323.0 + 0 ENSG00000137496.17 protein_coding IL18BP 2 OTTHUMG00000133713.5 +15680 chr11 HAVANA gene 72014291 72020910 4233.0 + 0 ENSG00000251143.1 antisense AP002490.1 2 OTTHUMG00000167782.1 +15681 chr11 ENSEMBL gene 72047873 72047951 79.0 - 0 ENSG00000207012.2 snRNA RNU6-72P 3 +15682 chr11 ENSEMBL gene 72072228 72072302 75.0 - 0 ENSG00000263742.1 miRNA MIR3165 3 +15683 chr11 HAVANA gene 72002864 72080693 15224.0 - 0 ENSG00000137497.17 protein_coding NUMA1 2 OTTHUMG00000167697.4 ncRNA_host +15684 chr11 HAVANA gene 72085895 72103387 2778.0 - 0 ENSG00000149357.9 protein_coding LAMTOR1 1 OTTHUMG00000167869.1 +15685 chr11 HAVANA gene 72105924 72109329 1209.0 + 0 ENSG00000284844.1 protein_coding AP000812.4 2 OTTHUMG00000192562.1 +15686 chr11 HAVANA gene 72080777 72110782 3384.0 + 0 ENSG00000284922.1 protein_coding AP000812.5 2 OTTHUMG00000192561.1 +15687 chr11 HAVANA gene 72080331 72110782 6144.0 + 0 ENSG00000184154.14 protein_coding LRTOMT 1 OTTHUMG00000154887.13 +15688 chr11 HAVANA gene 72106378 72112780 2883.0 - 0 ENSG00000110200.8 protein_coding ANAPC15 2 OTTHUMG00000167865.2 +15689 chr11 HAVANA gene 72131282 72131907 626.0 + 0 ENSG00000257075.1 processed_pseudogene RPEP6 1 OTTHUMG00000167872.1 pseudo_consens,overlapping_locus +15690 chr11 HAVANA gene 72114869 72139892 1396.0 + 0 ENSG00000110203.8 protein_coding FOLR3 2 OTTHUMG00000167870.5 overlapping_locus +15691 chr11 HAVANA gene 72158822 72159734 609.0 + 0 ENSG00000256518.3 unprocessed_pseudogene AP000812.3 2 OTTHUMG00000167873.2 +15692 chr11 HAVANA gene 72172455 72177954 718.0 + 0 ENSG00000255860.3 unprocessed_pseudogene AP000812.2 2 OTTHUMG00000167875.1 +15693 chr11 HAVANA gene 72189558 72196323 1648.0 + 0 ENSG00000110195.12 protein_coding FOLR1 2 OTTHUMG00000167876.2 +15694 chr11 HAVANA gene 72163322 72209241 477.0 - 0 ENSG00000204971.3 antisense AP000812.1 1 OTTHUMG00000167874.1 +15695 chr11 HAVANA gene 72216601 72221950 1416.0 + 0 ENSG00000165457.13 protein_coding FOLR2 1 OTTHUMG00000150394.3 +15696 chr11 HAVANA gene 72223701 72239105 6519.0 + 0 ENSG00000165458.13 protein_coding INPPL1 1 OTTHUMG00000167879.3 +15697 chr11 HAVANA gene 72239077 72245664 1784.0 - 0 ENSG00000165462.5 protein_coding PHOX2A 2 OTTHUMG00000167899.1 +15698 chr11 HAVANA gene 72249856 72251288 1433.0 - 0 ENSG00000228286.3 processed_pseudogene AP000593.2 1 OTTHUMG00000167900.1 pseudo_consens +15699 chr11 HAVANA gene 72280151 72281178 712.0 + 0 ENSG00000213365.3 processed_pseudogene AP000593.1 2 OTTHUMG00000167901.1 +15700 chr11 HAVANA gene 72261731 72290688 878.0 + 0 ENSG00000285864.1 lincRNA AP000593.4 2 OTTHUMG00000192962.2 overlapping_locus +15701 chr11 HAVANA gene 72302139 72302965 578.0 + 0 ENSG00000255843.1 antisense AP000593.3 1 OTTHUMG00000167903.1 +15702 chr11 HAVANA gene 72351347 72353210 560.0 + 0 ENSG00000256739.1 antisense AP002892.2 1 OTTHUMG00000167904.1 +15703 chr11 HAVANA gene 72354516 72363555 550.0 + 0 ENSG00000255672.1 antisense AP002892.1 1 OTTHUMG00000167905.1 +15704 chr11 HAVANA gene 72410716 72412079 492.0 + 0 ENSG00000256403.1 antisense AP003785.1 2 OTTHUMG00000167906.1 +15705 chr11 HAVANA gene 72285495 72434680 12428.0 - 0 ENSG00000162129.13 protein_coding CLPB 2 OTTHUMG00000167902.10 +15706 chr11 HAVANA gene 72478221 72479237 499.0 + 0 ENSG00000237408.1 unprocessed_pseudogene ART2BP 2 OTTHUMG00000154241.1 +15707 chr11 HAVANA gene 72519986 72521733 822.0 + 0 ENSG00000238048.1 unprocessed_pseudogene ART2P 2 OTTHUMG00000154242.1 +15708 chr11 HAVANA gene 72551049 72551919 560.0 - 0 ENSG00000276109.1 processed_pseudogene AP005019.3 2 OTTHUMG00000187773.1 +15709 chr11 HAVANA gene 72562044 72562554 511.0 + 0 ENSG00000274664.1 processed_pseudogene AP005019.2 2 OTTHUMG00000187775.1 +15710 chr11 HAVANA gene 72570660 72573229 2450.0 + 0 ENSG00000227467.3 lincRNA LINC01537 2 OTTHUMG00000167927.1 +15711 chr11 HAVANA gene 72584572 72587979 664.0 + 0 ENSG00000256633.1 antisense AP005019.1 1 OTTHUMG00000167928.1 +15712 chr11 ENSEMBL gene 72615063 72615130 68.0 - 0 ENSG00000272036.1 miRNA MIR139 3 +15713 chr11 ENSEMBL gene 72621766 72621827 62.0 + 0 ENSG00000251919.1 snRNA RNU7-105P 3 +15714 chr11 HAVANA gene 72643237 72659407 562.0 + 0 ENSG00000255808.1 antisense AP003065.1 2 OTTHUMG00000167929.1 +15715 chr11 HAVANA gene 72576141 72674591 7182.0 - 0 ENSG00000186642.15 protein_coding PDE2A 2 OTTHUMG00000102045.5 ncRNA_host +15716 chr11 HAVANA gene 72685075 72693808 388.0 + 0 ENSG00000256007.1 antisense ARAP1-AS1 2 OTTHUMG00000167950.1 +15717 chr11 HAVANA gene 72700474 72705607 1824.0 + 0 ENSG00000245148.2 antisense ARAP1-AS2 2 OTTHUMG00000167951.1 +15718 chr11 HAVANA gene 72708186 72708565 380.0 + 0 ENSG00000244134.1 processed_pseudogene RPS12P20 1 OTTHUMG00000158404.1 pseudo_consens +15719 chr11 ENSEMBL gene 72766004 72766116 113.0 + 0 ENSG00000202522.1 misc_RNA RF00019 3 +15720 chr11 ENSEMBL gene 72783530 72783592 63.0 + 0 ENSG00000265064.1 miRNA MIR4692 3 +15721 chr11 HAVANA gene 72685069 72793599 9056.0 - 0 ENSG00000186635.14 protein_coding ARAP1 2 OTTHUMG00000157102.4 overlapping_locus +15722 chr11 HAVANA gene 72754729 72793681 3710.0 - 0 ENSG00000214530.9 protein_coding STARD10 1 OTTHUMG00000192625.1 overlapping_locus +15723 chr11 HAVANA gene 72793624 72814054 1299.0 - 0 ENSG00000285693.1 lincRNA AP002381.2 2 OTTHUMG00000193429.1 overlapping_locus +15724 chr11 HAVANA gene 72814308 72843674 8617.0 + 0 ENSG00000168010.10 protein_coding ATG16L2 1 OTTHUMG00000167961.2 +15725 chr11 ENSEMBL gene 72869544 72869650 107.0 - 0 ENSG00000206638.1 snRNA RNU6-672P 3 +15726 chr11 HAVANA gene 72940498 72941112 615.0 + 0 ENSG00000234751.1 processed_pseudogene AP002381.1 1 OTTHUMG00000153085.1 pseudo_consens +15727 chr11 HAVANA gene 72836745 73142261 5188.0 - 0 ENSG00000137478.14 protein_coding FCHSD2 1 OTTHUMG00000153082.6 ncRNA_host +15728 chr11 HAVANA gene 73176694 73181696 618.0 + 0 ENSG00000256568.1 lincRNA AP002761.2 1 OTTHUMG00000167964.1 +15729 chr11 HAVANA gene 73214998 73215913 262.0 - 0 ENSG00000215841.3 antisense AP002761.1 1 OTTHUMG00000167965.1 +15730 chr11 HAVANA gene 73218298 73236352 2861.0 + 0 ENSG00000175591.11 protein_coding P2RY2 2 OTTHUMG00000167966.1 retrogene +15731 chr11 HAVANA gene 73238975 73242335 3361.0 + 0 ENSG00000260401.1 sense_overlapping AP002761.4 2 OTTHUMG00000167967.1 +15732 chr11 HAVANA gene 73248779 73249867 764.0 + 0 ENSG00000256347.1 unprocessed_pseudogene OR8R1P 2 OTTHUMG00000167968.1 +15733 chr11 HAVANA gene 73264505 73298617 3976.0 + 0 ENSG00000171631.14 protein_coding P2RY6 2 OTTHUMG00000167969.3 +15734 chr11 HAVANA gene 73307235 73309361 1695.0 - 0 ENSG00000257038.1 antisense AP002761.3 2 OTTHUMG00000167970.2 +15735 chr11 HAVANA gene 73308289 73369388 9908.0 + 0 ENSG00000110237.4 protein_coding ARHGEF17 2 OTTHUMG00000167971.3 +15736 chr11 HAVANA gene 73395559 73396436 752.0 - 0 ENSG00000256928.1 antisense AP000763.4 2 OTTHUMG00000167992.1 +15737 chr11 HAVANA gene 73376264 73397474 6322.0 + 0 ENSG00000054967.12 protein_coding RELT 2 OTTHUMG00000167973.3 +15738 chr11 HAVANA gene 73405297 73410682 344.0 + 0 ENSG00000256448.5 antisense AP000763.3 1 OTTHUMG00000167996.1 +15739 chr11 HAVANA gene 73452020 73452344 325.0 + 0 ENSG00000255786.1 processed_pseudogene AP000763.1 1 OTTHUMG00000167997.1 pseudo_consens +15740 chr11 HAVANA gene 73510658 73510820 163.0 + 0 ENSG00000256148.1 processed_pseudogene AP000763.2 2 OTTHUMG00000167998.1 +15741 chr11 HAVANA gene 73580253 73580517 265.0 + 0 ENSG00000231726.2 processed_pseudogene HMGN2P38 2 OTTHUMG00000167999.1 +15742 chr11 HAVANA gene 73400487 73598189 7887.0 - 0 ENSG00000054965.10 protein_coding FAM168A 2 OTTHUMG00000167995.2 +15743 chr11 HAVANA gene 73640479 73641037 559.0 + 0 ENSG00000270323.1 processed_pseudogene AP000860.1 1 OTTHUMG00000184756.1 pseudo_consens +15744 chr11 HAVANA gene 73646178 73662819 4933.0 + 0 ENSG00000021300.13 protein_coding PLEKHB1 2 OTTHUMG00000168030.3 +15745 chr11 HAVANA gene 73722349 73722694 210.0 + 0 ENSG00000255928.1 antisense AP002993.1 2 OTTHUMG00000168035.1 +15746 chr11 HAVANA gene 73760563 73761070 428.0 + 0 ENSG00000256034.1 antisense AP002770.1 2 OTTHUMG00000168031.1 +15747 chr11 HAVANA gene 73675638 73761137 4896.0 - 0 ENSG00000175582.19 protein_coding RAB6A 2 OTTHUMG00000134308.6 +15748 chr11 ENSEMBL gene 73832382 73832690 309.0 - 0 ENSG00000199975.1 misc_RNA RN7SKP243 3 +15749 chr11 HAVANA gene 73850469 73851211 432.0 - 0 ENSG00000256681.1 processed_pseudogene CCDC58P5 1 OTTHUMG00000168060.1 pseudo_consens +15750 chr11 HAVANA gene 73787316 73865133 4386.0 + 0 ENSG00000175581.13 protein_coding MRPL48 1 OTTHUMG00000168048.4 +15751 chr11 HAVANA gene 73872667 73876988 2246.0 - 0 ENSG00000181924.6 protein_coding COA4 1 OTTHUMG00000168061.1 +15752 chr11 HAVANA gene 73921665 73922196 532.0 - 0 ENSG00000256898.1 processed_pseudogene AP002770.2 1 OTTHUMG00000168066.1 pseudo_consens +15753 chr11 HAVANA gene 73876699 73931124 7937.0 + 0 ENSG00000175575.12 protein_coding PAAF1 1 OTTHUMG00000168062.4 +15754 chr11 HAVANA gene 73963657 73970287 1412.0 - 0 ENSG00000255847.5 antisense AP003717.1 2 OTTHUMG00000168094.1 +15755 chr11 HAVANA gene 73950319 73970366 3475.0 + 0 ENSG00000187726.8 protein_coding DNAJB13 2 OTTHUMG00000168093.1 +15756 chr11 HAVANA gene 73974667 73983307 3237.0 - 0 ENSG00000175567.8 protein_coding UCP2 1 OTTHUMG00000168095.5 +15757 chr11 HAVANA gene 73991283 73992180 898.0 - 0 ENSG00000256189.1 processed_pseudogene AP003717.2 1 OTTHUMG00000168107.2 pseudo_consens +15758 chr11 HAVANA gene 73994972 73996151 1180.0 - 0 ENSG00000256723.1 processed_pseudogene AP003717.3 1 OTTHUMG00000168108.1 pseudo_consens +15759 chr11 HAVANA gene 74000281 74009435 3684.0 - 0 ENSG00000175564.12 protein_coding UCP3 2 OTTHUMG00000168109.2 +15760 chr11 HAVANA gene 74142151 74142358 208.0 + 0 ENSG00000256098.1 processed_pseudogene AP002392.1 1 OTTHUMG00000168114.1 pseudo_consens +15761 chr11 HAVANA gene 74012714 74171210 12571.0 - 0 ENSG00000168014.16 protein_coding C2CD3 1 OTTHUMG00000168110.2 +15762 chr11 ENSEMBL gene 74198748 74198854 107.0 - 0 ENSG00000284736.1 rRNA RNA5SP343 3 +15763 chr11 HAVANA gene 74204869 74205746 878.0 + 0 ENSG00000280269.1 TEC AP000577.1 2 OTTHUMG00000168116.1 overlapping_locus +15764 chr11 ENSEMBL gene 74252414 74252552 139.0 - 0 ENSG00000206913.1 snoRNA RF00409 3 +15765 chr11 HAVANA gene 74171099 74254703 7917.0 + 0 ENSG00000214517.9 protein_coding PPME1 1 OTTHUMG00000168115.4 overlapping_locus +15766 chr11 HAVANA gene 74235801 74311657 4009.0 - 0 ENSG00000149380.11 protein_coding P4HA3 1 OTTHUMG00000165254.4 ncRNA_host +15767 chr11 HAVANA gene 74311362 74324705 2157.0 + 0 ENSG00000246211.2 lincRNA P4HA3-AS1 2 OTTHUMG00000168131.1 +15768 chr11 HAVANA gene 74354443 74355720 1278.0 + 0 ENSG00000212961.4 processed_pseudogene HNRNPA1P40 1 OTTHUMG00000168133.1 pseudo_consens +15769 chr11 HAVANA gene 74330318 74398473 8820.0 - 0 ENSG00000165434.7 protein_coding PGM2L1 2 OTTHUMG00000168132.1 +15770 chr11 ENSEMBL gene 74399237 74399333 97.0 + 0 ENSG00000264402.1 miRNA MIR548AL 3 +15771 chr11 HAVANA gene 74409060 74416379 639.0 + 0 ENSG00000255440.1 sense_intronic AP001085.1 1 OTTHUMG00000165649.1 overlapping_locus +15772 chr11 HAVANA gene 74455348 74456825 609.0 + 0 ENSG00000254928.1 antisense AP001372.3 1 OTTHUMG00000165642.1 overlapping_locus +15773 chr11 HAVANA gene 74454841 74467729 3677.0 - 0 ENSG00000175538.10 protein_coding KCNE3 2 OTTHUMG00000165641.2 +15774 chr11 HAVANA gene 74482250 74482542 293.0 + 0 ENSG00000255444.1 processed_pseudogene CYCSP27 1 OTTHUMG00000165643.1 pseudo_consens,overlapping_locus +15775 chr11 HAVANA gene 74397549 74485742 681.0 + 0 ENSG00000254631.5 antisense AP001372.1 2 OTTHUMG00000165644.3 ncRNA_host,overlapping_locus +15776 chr11 HAVANA gene 74485580 74486051 472.0 - 0 ENSG00000254974.1 processed_pseudogene AP001372.4 1 OTTHUMG00000165645.1 pseudo_consens +15777 chr11 HAVANA gene 74491712 74493733 1187.0 - 0 ENSG00000175536.6 protein_coding LIPT2 1 OTTHUMG00000165646.2 +15778 chr11 HAVANA gene 74493366 74498533 2493.0 + 0 ENSG00000254837.2 bidirectional_promoter_lncRNA AP001372.2 2 OTTHUMG00000150368.2 overlapping_locus +15779 chr11 HAVANA gene 74652636 74652911 276.0 + 0 ENSG00000254500.1 processed_pseudogene RANP3 1 OTTHUMG00000165622.1 pseudo_consens,overlapping_locus +15780 chr11 HAVANA gene 74493851 74669117 5508.0 + 0 ENSG00000077514.8 protein_coding POLD3 1 OTTHUMG00000165621.3 overlapping_locus +15781 chr11 ENSEMBL gene 74685224 74685505 282.0 + 0 ENSG00000223202.1 misc_RNA RN7SKP297 3 +15782 chr11 HAVANA gene 74698231 74699658 1428.0 - 0 ENSG00000279353.1 TEC AP001324.3 2 OTTHUMG00000165624.1 overlapping_locus +15783 chr11 ENSEMBL gene 74720268 74720337 70.0 - 0 ENSG00000265902.1 miRNA MIR4696 3 +15784 chr11 HAVANA gene 74696429 74731385 3135.0 - 0 ENSG00000054938.15 protein_coding CHRDL2 1 OTTHUMG00000165623.1 ncRNA_host,overlapping_locus +15785 chr11 HAVANA gene 74738478 74738796 319.0 - 0 ENSG00000241097.2 processed_pseudogene AP001324.2 1 OTTHUMG00000158405.2 pseudo_consens +15786 chr11 HAVANA gene 74745716 74746114 399.0 - 0 ENSG00000227615.1 processed_pseudogene AP001324.1 2 OTTHUMG00000158412.1 +15787 chr11 HAVANA gene 74830574 74832510 1937.0 - 0 ENSG00000278879.1 TEC AP000560.1 2 OTTHUMG00000165536.1 overlapping_locus +15788 chr11 HAVANA gene 74748868 74842413 7823.0 + 0 ENSG00000166439.5 protein_coding RNF169 2 OTTHUMG00000165516.2 +15789 chr11 ENSEMBL gene 74845910 74846209 300.0 + 0 ENSG00000242999.3 misc_RNA RN7SL239P 3 +15790 chr11 HAVANA gene 74876286 74920022 1532.0 + 0 ENSG00000241170.3 transcribed_processed_pseudogene AP001992.1 1 OTTHUMG00000158413.3 pseudo_consens +15791 chr11 HAVANA gene 74807739 74949200 9086.0 - 0 ENSG00000166435.15 protein_coding XRRA1 1 OTTHUMG00000165515.3 overlapping_locus +15792 chr11 ENSEMBL gene 74968189 74968292 104.0 - 0 ENSG00000200152.1 snRNA RNU6-216P 3 +15793 chr11 HAVANA gene 74949247 74979031 2982.0 + 0 ENSG00000118363.11 protein_coding SPCS2 2 OTTHUMG00000165517.2 +15794 chr11 HAVANA gene 74988134 75018893 7556.0 + 0 ENSG00000162139.9 protein_coding NEU3 1 OTTHUMG00000165518.2 +15795 chr11 HAVANA gene 75071148 75072052 905.0 - 0 ENSG00000234611.1 transcribed_unitary_pseudogene OR2AT2P 2 OTTHUMG00000154334.1 overlapping_locus +15796 chr11 HAVANA gene 75079265 75080131 867.0 - 0 ENSG00000213333.3 transcribed_processed_pseudogene NPM1P50 1 OTTHUMG00000165369.1 pseudo_consens,overlapping_locus +15797 chr11 HAVANA gene 75081753 75096876 8795.0 - 0 ENSG00000171561.4 protein_coding OR2AT4 2 OTTHUMG00000165370.3 +15798 chr11 HAVANA gene 75069243 75096964 6947.0 - 0 ENSG00000284722.2 processed_transcript AP003175.1 2 OTTHUMG00000192311.2 overlapping_locus +15799 chr11 HAVANA gene 75131138 75131880 743.0 - 0 ENSG00000254475.1 unprocessed_pseudogene OR2AT1P 1 OTTHUMG00000165421.1 pseudo_consens +15800 chr11 HAVANA gene 75099172 75140148 560.0 - 0 ENSG00000255395.1 antisense AP001972.4 2 OTTHUMG00000165419.1 overlapping_locus +15801 chr11 HAVANA gene 75100563 75206549 10351.0 + 0 ENSG00000137491.14 protein_coding SLCO2B1 1 OTTHUMG00000165420.4 +15802 chr11 HAVANA gene 75228322 75228657 336.0 - 0 ENSG00000255460.1 processed_pseudogene ZDHHC20P3 1 OTTHUMG00000165440.1 pseudo_consens,overlapping_locus +15803 chr11 HAVANA gene 75208054 75241173 862.0 - 0 ENSG00000255136.2 lincRNA AP001972.3 1 OTTHUMG00000165439.2 overlapping_locus +15804 chr11 HAVANA gene 75240905 75243697 2793.0 + 0 ENSG00000261594.3 protein_coding TPBGL 2 OTTHUMG00000165441.2 +15805 chr11 HAVANA gene 75260127 75261025 506.0 + 0 ENSG00000254429.1 antisense AP001972.1 1 OTTHUMG00000165442.1 +15806 chr11 HAVANA gene 75260129 75262466 2338.0 - 0 ENSG00000279117.1 TEC AP001972.5 2 OTTHUMG00000165443.1 +15807 chr11 HAVANA gene 75264289 75265170 216.0 + 0 ENSG00000254963.1 antisense AP001972.2 2 OTTHUMG00000165447.1 +15808 chr11 ENSEMBL gene 75335092 75335186 95.0 - 0 ENSG00000199090.1 miRNA MIR326 3 +15809 chr11 HAVANA gene 75264182 75351705 5828.0 - 0 ENSG00000137486.16 protein_coding ARRB1 1 OTTHUMG00000165444.4 ncRNA_host +15810 chr11 ENSEMBL gene 75400391 75400538 148.0 + 0 ENSG00000206941.1 snoRNA SNORD15A 3 +15811 chr11 ENSEMBL gene 75404421 75404566 146.0 + 0 ENSG00000207445.1 snoRNA SNORD15B 3 +15812 chr11 HAVANA gene 75399486 75422280 5894.0 + 0 ENSG00000149273.14 protein_coding RPS3 1 OTTHUMG00000165448.3 ncRNA_host +15813 chr11 HAVANA gene 75422394 75430629 5041.0 - 0 ENSG00000149243.15 protein_coding KLHL35 2 OTTHUMG00000133573.3 +15814 chr11 HAVANA gene 75506937 75508391 386.0 - 0 ENSG00000254460.1 sense_intronic AP002815.1 1 OTTHUMG00000165485.1 overlapping_locus +15815 chr11 HAVANA gene 75434640 75525903 9867.0 - 0 ENSG00000158555.14 protein_coding GDPD5 1 OTTHUMG00000165484.2 overlapping_locus +15816 chr11 HAVANA gene 75562056 75572783 4914.0 + 0 ENSG00000149257.14 protein_coding SERPINH1 2 OTTHUMG00000165362.7 +15817 chr11 HAVANA gene 75583196 75594665 651.0 + 0 ENSG00000255326.1 antisense AP001922.5 1 OTTHUMG00000165342.1 +15818 chr11 HAVANA gene 75596144 75597270 546.0 - 0 ENSG00000255434.1 sense_intronic AP001922.6 1 OTTHUMG00000165348.1 overlapping_locus +15819 chr11 HAVANA gene 75635883 75638587 390.0 - 0 ENSG00000254630.1 sense_intronic AP001922.2 1 OTTHUMG00000165349.1 overlapping_locus +15820 chr11 HAVANA gene 75642600 75642889 290.0 + 0 ENSG00000255280.1 processed_pseudogene AP001922.4 1 OTTHUMG00000165344.2 pseudo_consens +15821 chr11 HAVANA gene 75586918 75669120 6433.0 - 0 ENSG00000171533.11 protein_coding MAP6 1 OTTHUMG00000165343.2 overlapping_locus +15822 chr11 HAVANA gene 75717819 75732958 4139.0 + 0 ENSG00000166391.14 protein_coding MOGAT2 2 OTTHUMG00000165341.1 +15823 chr11 ENSEMBL gene 75742129 75742426 298.0 + 0 ENSG00000263993.2 misc_RNA RN7SL786P 3 +15824 chr11 HAVANA gene 75758455 75768647 1504.0 - 0 ENSG00000247867.2 antisense AP001922.1 2 OTTHUMG00000165337.1 +15825 chr11 HAVANA gene 75775904 75776929 842.0 + 0 ENSG00000254826.1 sense_intronic AP001922.3 2 OTTHUMG00000165339.1 overlapping_locus +15826 chr11 HAVANA gene 75759512 75801535 7905.0 + 0 ENSG00000062282.14 protein_coding DGAT2 1 OTTHUMG00000165338.3 overlapping_locus +15827 chr11 HAVANA gene 75800877 75803415 758.0 - 0 ENSG00000254814.1 antisense AP003031.1 2 OTTHUMG00000165317.1 +15828 chr11 HAVANA gene 75803431 75815406 1526.0 - 0 ENSG00000255507.5 antisense UVRAG-DT 1 OTTHUMG00000165318.1 +15829 chr11 ENSEMBL gene 75835215 75835323 109.0 - 0 ENSG00000200256.1 misc_RNA RF00019 3 +15830 chr11 ENSEMBL gene 75837544 75837645 102.0 - 0 ENSG00000199362.1 misc_RNA RF00019 3 +15831 chr11 HAVANA gene 75911204 75911628 425.0 - 0 ENSG00000255255.1 processed_pseudogene PPP1R1AP1 1 OTTHUMG00000165320.1 pseudo_consens +15832 chr11 HAVANA gene 75914201 75915213 471.0 + 0 ENSG00000255081.1 sense_intronic AP003168.2 2 OTTHUMG00000165321.1 overlapping_locus +15833 chr11 ENSEMBL gene 75934936 75935039 104.0 + 0 ENSG00000223013.1 rRNA_pseudogene RNA5SP344 3 +15834 chr11 HAVANA gene 75942129 75942435 307.0 - 0 ENSG00000254915.1 processed_pseudogene AP003168.1 1 OTTHUMG00000165350.1 pseudo_consens +15835 chr11 HAVANA gene 76137315 76137731 285.0 - 0 ENSG00000255421.1 antisense AP002340.1 2 OTTHUMG00000165322.1 +15836 chr11 HAVANA gene 75815167 76143195 6352.0 + 0 ENSG00000198382.8 protein_coding UVRAG 1 OTTHUMG00000165319.2 overlapping_locus +15837 chr11 HAVANA gene 76190725 76195071 613.0 + 0 ENSG00000254933.1 antisense AP000785.1 1 OTTHUMG00000165265.1 +15838 chr11 HAVANA gene 76186325 76210736 2401.0 - 0 ENSG00000085741.12 protein_coding WNT11 2 OTTHUMG00000165264.3 +15839 chr11 HAVANA gene 76210956 76216025 388.0 - 0 ENSG00000255362.1 lincRNA AP000785.2 2 OTTHUMG00000165266.1 +15840 chr11 HAVANA gene 76349956 76380971 7727.0 - 0 ENSG00000137492.7 protein_coding THAP12 2 OTTHUMG00000165280.1 +15841 chr11 HAVANA gene 76389648 76390128 481.0 + 0 ENSG00000272301.1 lincRNA AP002360.3 2 OTTHUMG00000185367.1 overlapping_locus +15842 chr11 HAVANA gene 76392196 76392905 710.0 + 0 ENSG00000271757.1 lincRNA AP002360.2 2 OTTHUMG00000185368.1 overlapping_locus +15843 chr11 ENSEMBL gene 76404140 76404252 113.0 - 0 ENSG00000201756.1 misc_RNA RF00019 3 +15844 chr11 HAVANA gene 76381313 76414619 10972.0 + 0 ENSG00000179240.9 protein_coding GVQW3 1 OTTHUMG00000165281.2 overlapping_locus +15845 chr11 HAVANA gene 76441338 76444656 754.0 - 0 ENSG00000255135.3 lincRNA AP002360.1 1 OTTHUMG00000165292.2 +15846 chr11 HAVANA gene 76444923 76553025 11783.0 + 0 ENSG00000158636.16 protein_coding EMSY 1 OTTHUMG00000165282.5 +15847 chr11 HAVANA gene 76591023 76591211 189.0 + 0 ENSG00000254755.1 processed_pseudogene AP001189.2 1 OTTHUMG00000165257.1 pseudo_consens +15848 chr11 HAVANA gene 76625462 76626834 831.0 - 0 ENSG00000255479.1 lincRNA AP001189.6 2 OTTHUMG00000165258.1 +15849 chr11 HAVANA gene 76607853 76630427 1725.0 - 0 ENSG00000255363.2 lincRNA AP001189.5 1 OTTHUMG00000165259.2 +15850 chr11 HAVANA gene 76654169 76656712 651.0 - 0 ENSG00000254810.1 lincRNA AP001189.3 1 OTTHUMG00000165260.1 +15851 chr11 HAVANA gene 76657056 76663866 1426.0 + 0 ENSG00000236304.1 antisense AP001189.1 2 OTTHUMG00000150349.1 +15852 chr11 HAVANA gene 76657524 76670747 4459.0 - 0 ENSG00000137507.11 protein_coding LRRC32 1 OTTHUMG00000133687.4 +15853 chr11 HAVANA gene 76675079 76703195 452.0 + 0 ENSG00000254975.1 lincRNA AP001189.4 1 OTTHUMG00000165261.2 +15854 chr11 HAVANA gene 76694041 76719801 2609.0 - 0 ENSG00000204529.4 transcribed_unprocessed_pseudogene GUCY2EP 2 OTTHUMG00000165247.4 +15855 chr11 HAVANA gene 76759916 76768223 538.0 - 0 ENSG00000254632.1 antisense AP003119.1 1 OTTHUMG00000165237.1 +15856 chr11 HAVANA gene 76782581 76783062 354.0 - 0 ENSG00000255100.1 antisense AP003119.2 2 OTTHUMG00000165239.1 +15857 chr11 HAVANA gene 76782251 76798154 4131.0 + 0 ENSG00000182704.7 protein_coding TSKU 2 OTTHUMG00000165238.3 +15858 chr11 HAVANA gene 76800364 76804555 4192.0 + 0 ENSG00000261578.1 sense_overlapping AP003119.3 2 OTTHUMG00000165240.1 +15859 chr11 HAVANA gene 76955417 76978619 568.0 - 0 ENSG00000254988.1 antisense AP002498.1 1 OTTHUMG00000165241.1 +15860 chr11 HAVANA gene 76860867 77026797 8442.0 + 0 ENSG00000078124.11 protein_coding ACER3 2 OTTHUMG00000165225.3 +15861 chr11 HAVANA gene 77034398 77041973 2626.0 + 0 ENSG00000198488.10 protein_coding B3GNT6 2 OTTHUMG00000181633.4 +15862 chr11 HAVANA gene 77102840 77103331 492.0 + 0 ENSG00000254550.1 protein_coding OMP 2 OTTHUMG00000165193.2 overlapping_locus +15863 chr11 HAVANA gene 77066941 77126155 6157.0 + 0 ENSG00000149260.16 protein_coding CAPN5 1 OTTHUMG00000165192.6 overlapping_locus +15864 chr11 HAVANA gene 77128264 77215241 10147.0 + 0 ENSG00000137474.20 protein_coding MYO7A 1 OTTHUMG00000152822.6 +15865 chr11 HAVANA gene 77216558 77301687 3188.0 - 0 ENSG00000178795.9 protein_coding GDPD4 2 OTTHUMG00000165136.1 +15866 chr11 HAVANA gene 77313606 77314032 427.0 + 0 ENSG00000224829.3 processed_pseudogene TOMM20P1 1 OTTHUMG00000165137.1 pseudo_consens +15867 chr11 HAVANA gene 77321707 77474635 6299.0 - 0 ENSG00000149269.9 protein_coding PAK1 1 OTTHUMG00000165138.4 +15868 chr11 HAVANA gene 77473371 77477030 3660.0 + 0 ENSG00000268635.2 antisense AP003680.1 2 OTTHUMG00000165139.1 +15869 chr11 ENSEMBL gene 77566934 77566994 61.0 - 0 ENSG00000238880.1 snRNA RNU7-59P 3 +15870 chr11 HAVANA gene 77589391 77610355 2396.0 + 0 ENSG00000178301.3 protein_coding AQP11 2 OTTHUMG00000165194.1 +15871 chr11 HAVANA gene 77514936 77637805 4592.0 - 0 ENSG00000074201.8 protein_coding CLNS1A 2 OTTHUMG00000165143.4 ncRNA_host +15872 chr11 ENSEMBL gene 77691650 77691751 102.0 + 0 ENSG00000206816.1 misc_RNA RF00019 3 +15873 chr11 HAVANA gene 77717712 77718411 566.0 - 0 ENSG00000254985.1 sense_intronic RSF1-IT2 2 OTTHUMG00000166669.1 overlapping_locus +15874 chr11 HAVANA gene 77734475 77735026 552.0 - 0 ENSG00000227376.1 processed_pseudogene FTH1P16 2 OTTHUMG00000150432.1 overlapping_locus +15875 chr11 HAVANA gene 77738680 77739568 632.0 - 0 ENSG00000255409.1 sense_intronic RSF1-IT1 1 OTTHUMG00000166670.1 overlapping_locus +15876 chr11 HAVANA gene 77813319 77813676 358.0 - 0 ENSG00000219529.2 processed_pseudogene AP000580.1 1 OTTHUMG00000150434.1 pseudo_consens,overlapping_locus +15877 chr11 HAVANA gene 77659996 77821017 15740.0 - 0 ENSG00000048649.13 protein_coding RSF1 1 OTTHUMG00000150433.3 overlapping_locus +15878 chr11 HAVANA gene 77850604 77851511 551.0 + 0 ENSG00000254691.1 antisense AP002812.3 2 OTTHUMG00000166652.2 overlapping_locus +15879 chr11 HAVANA gene 77868722 77869195 474.0 - 0 ENSG00000241782.1 processed_pseudogene AP002812.1 1 OTTHUMG00000158426.1 pseudo_consens,overlapping_locus +15880 chr11 HAVANA gene 77866412 77870091 712.0 - 0 ENSG00000255449.1 antisense AP002812.5 1 OTTHUMG00000166655.1 overlapping_locus +15881 chr11 HAVANA gene 77829654 77872262 585.0 - 0 ENSG00000254459.1 antisense AP002812.2 2 OTTHUMG00000166654.1 overlapping_locus +15882 chr11 HAVANA gene 77914990 77915275 286.0 - 0 ENSG00000255115.2 processed_pseudogene AP002812.4 1 OTTHUMG00000166653.2 pseudo_consens,overlapping_locus +15883 chr11 HAVANA gene 77821109 77918432 1943.0 + 0 ENSG00000087884.14 protein_coding AAMDC 1 OTTHUMG00000166651.2 overlapping_locus +15884 chr11 HAVANA gene 77878720 77994678 6074.0 - 0 ENSG00000149262.16 protein_coding INTS4 2 OTTHUMG00000166629.2 overlapping_locus +15885 chr11 HAVANA gene 78015715 78016495 686.0 + 0 ENSG00000254829.1 antisense AP003032.2 2 OTTHUMG00000166630.1 +15886 chr11 HAVANA gene 78022933 78023721 277.0 + 0 ENSG00000254675.1 antisense AP003032.1 2 OTTHUMG00000166631.1 +15887 chr11 HAVANA gene 78015715 78046191 1917.0 - 0 ENSG00000151364.16 protein_coding KCTD14 1 OTTHUMG00000150224.3 overlapping_locus,retrogene +15888 chr11 HAVANA gene 78063861 78068351 1174.0 + 0 ENSG00000151365.2 protein_coding THRSP 2 OTTHUMG00000166632.1 +15889 chr11 HAVANA gene 78016971 78079865 826.0 - 0 ENSG00000259112.2 protein_coding NDUFC2-KCTD14 2 OTTHUMG00000171802.3 overlapping_locus +15890 chr11 HAVANA gene 78068304 78080219 2652.0 - 0 ENSG00000151366.12 protein_coding NDUFC2 2 OTTHUMG00000166614.1 overlapping_locus +15891 chr11 ENSEMBL gene 78133420 78133522 103.0 - 0 ENSG00000252494.1 snRNA RNU6-126P 3 +15892 chr11 HAVANA gene 78100936 78139660 3448.0 - 0 ENSG00000159063.12 protein_coding ALG8 1 OTTHUMG00000166594.6 ncRNA_host +15893 chr11 HAVANA gene 78139771 78175323 4095.0 + 0 ENSG00000246174.7 antisense KCTD21-AS1 1 OTTHUMG00000166595.1 +15894 chr11 HAVANA gene 78171249 78188822 4164.0 - 0 ENSG00000188997.7 protein_coding KCTD21 2 OTTHUMG00000166497.3 +15895 chr11 HAVANA gene 78188812 78214711 5233.0 + 0 ENSG00000118369.12 protein_coding USP35 2 OTTHUMG00000166492.2 +15896 chr11 HAVANA gene 78388061 78392405 365.0 + 0 ENSG00000254649.1 antisense AP003086.3 2 OTTHUMG00000166696.1 overlapping_locus +15897 chr11 HAVANA gene 78215297 78418348 6771.0 - 0 ENSG00000033327.12 protein_coding GAB2 1 OTTHUMG00000166673.2 +15898 chr11 HAVANA gene 78423982 78429836 1642.0 - 0 ENSG00000251323.2 lincRNA AP003086.1 2 OTTHUMG00000166701.1 +15899 chr11 HAVANA gene 78324758 78444049 437.0 + 0 ENSG00000254420.1 antisense AP003086.2 2 OTTHUMG00000166695.1 overlapping_locus +15900 chr11 HAVANA gene 78533176 78558565 717.0 + 0 ENSG00000255084.1 antisense AP003110.1 2 OTTHUMG00000166697.1 +15901 chr11 HAVANA gene 78435961 78574874 3153.0 - 0 ENSG00000137513.9 protein_coding NARS2 1 OTTHUMG00000166702.3 +15902 chr11 ENSEMBL gene 78579255 78579356 102.0 - 0 ENSG00000252033.1 snRNA RNU6-311P 3 +15903 chr11 HAVANA gene 78581675 78582156 482.0 + 0 ENSG00000254697.1 processed_pseudogene COPS8P3 1 OTTHUMG00000166759.1 pseudo_consens +15904 chr11 HAVANA gene 78749250 78756480 320.0 + 0 ENSG00000254563.1 antisense AP002768.1 1 OTTHUMG00000166783.1 +15905 chr11 HAVANA gene 79092848 79098003 2399.0 + 0 ENSG00000255345.1 lincRNA AP002957.1 2 OTTHUMG00000166784.1 +15906 chr11 HAVANA gene 79191558 79193160 374.0 + 0 ENSG00000254885.1 lincRNA AP001547.1 2 OTTHUMG00000166785.1 +15907 chr11 ENSEMBL gene 79402022 79402109 88.0 - 0 ENSG00000211997.1 miRNA MIR708 3 +15908 chr11 ENSEMBL gene 79422169 79422226 58.0 - 0 ENSG00000266570.1 miRNA MIR5579 3 +15909 chr11 HAVANA gene 78652831 79440948 16330.0 - 0 ENSG00000149256.15 protein_coding TENM4 1 OTTHUMG00000166770.6 ncRNA_host +15910 chr11 HAVANA gene 79604967 79612300 834.0 - 0 ENSG00000255209.1 lincRNA AP001978.1 2 OTTHUMG00000166787.1 +15911 chr11 HAVANA gene 79966805 79968708 1904.0 + 0 ENSG00000279295.1 TEC AP001541.1 2 OTTHUMG00000166788.1 +15912 chr11 HAVANA gene 79987513 79989630 2118.0 + 0 ENSG00000254471.1 processed_pseudogene AP001284.1 1 OTTHUMG00000166789.1 pseudo_consens +15913 chr11 HAVANA gene 80321620 80327911 585.0 - 0 ENSG00000254434.1 lincRNA AP006295.1 2 OTTHUMG00000166791.1 +15914 chr11 ENSEMBL gene 80527960 80528066 107.0 + 0 ENSG00000200146.1 snRNA RNU6-544P 3 +15915 chr11 HAVANA gene 80653429 80653988 560.0 - 0 ENSG00000255014.1 processed_pseudogene ARL6IP1P3 1 OTTHUMG00000166792.1 pseudo_consens +15916 chr11 HAVANA gene 80751200 80762826 1571.0 - 0 ENSG00000255178.1 lincRNA AP002759.1 2 OTTHUMG00000166793.1 +15917 chr11 HAVANA gene 80957317 80957634 318.0 + 0 ENSG00000254437.1 processed_pseudogene AP003398.1 1 OTTHUMG00000166797.1 pseudo_consens +15918 chr11 HAVANA gene 81015849 81040236 1052.0 + 0 ENSG00000285568.1 lincRNA AP003398.2 2 OTTHUMG00000193125.1 +15919 chr11 HAVANA gene 81552226 81552516 291.0 + 0 ENSG00000254747.1 processed_pseudogene MTND4LP18 2 OTTHUMG00000166827.1 +15920 chr11 HAVANA gene 81555910 81556425 516.0 - 0 ENSG00000255316.1 unprocessed_pseudogene MTND6P25 2 OTTHUMG00000166828.1 +15921 chr11 HAVANA gene 81842435 81842669 235.0 - 0 ENSG00000270701.1 processed_pseudogene AP002802.2 1 OTTHUMG00000184805.1 pseudo_consens +15922 chr11 ENSEMBL gene 81890741 81890836 96.0 - 0 ENSG00000264110.1 miRNA MIR4300 3 +15923 chr11 HAVANA gene 81970994 81987813 342.0 + 0 ENSG00000254511.1 lincRNA AP002802.1 1 OTTHUMG00000166868.3 +15924 chr11 HAVANA gene 82603743 82643419 740.0 - 0 ENSG00000255246.1 lincRNA AP000793.1 2 OTTHUMG00000166836.2 overlapping_locus +15925 chr11 HAVANA gene 82689559 82689768 210.0 + 0 ENSG00000227097.5 processed_pseudogene RPS28P7 2 OTTHUMG00000158427.1 +15926 chr11 HAVANA gene 81879851 82718082 1840.0 - 0 ENSG00000245832.6 lincRNA MIR4300HG 2 OTTHUMG00000166867.1 ncRNA_host,overlapping_locus +15927 chr11 HAVANA gene 82729941 82733864 3924.0 - 0 ENSG00000182103.4 protein_coding FAM181B 2 OTTHUMG00000166869.1 +15928 chr11 HAVANA gene 82805354 82806509 1156.0 + 0 ENSG00000255063.1 processed_pseudogene AP001646.2 1 OTTHUMG00000166897.1 pseudo_consens,overlapping_locus +15929 chr11 HAVANA gene 82791662 82817146 446.0 + 0 ENSG00000255382.1 lincRNA AP001646.3 2 OTTHUMG00000166896.1 overlapping_locus +15930 chr11 HAVANA gene 82835509 82837222 915.0 + 0 ENSG00000254441.1 processed_pseudogene AP001646.1 1 OTTHUMG00000166928.1 pseudo_consens +15931 chr11 HAVANA gene 82957423 82958216 794.0 + 0 ENSG00000242279.1 processed_pseudogene AP000893.1 2 OTTHUMG00000158432.1 overlapping_locus +15932 chr11 HAVANA gene 82899975 82958277 5339.0 + 0 ENSG00000165490.12 protein_coding DDIAS 2 OTTHUMG00000166929.2 overlapping_locus +15933 chr11 HAVANA gene 82823502 82970584 12798.0 - 0 ENSG00000137509.10 protein_coding PRCP 1 OTTHUMG00000166899.4 overlapping_locus +15934 chr11 HAVANA gene 82963681 83039115 433.0 - 0 ENSG00000254698.1 sense_overlapping AP000893.2 2 OTTHUMG00000166972.1 overlapping_locus +15935 chr11 HAVANA gene 83040806 83041403 286.0 - 0 ENSG00000254522.1 processed_pseudogene AP001767.1 2 OTTHUMG00000167009.1 overlapping_locus +15936 chr11 ENSEMBL gene 83041464 83041598 135.0 - 0 ENSG00000207221.1 snoRNA SNORA70E 3 +15937 chr11 HAVANA gene 82973133 83071923 11832.0 - 0 ENSG00000137502.9 protein_coding RAB30 1 OTTHUMG00000166973.3 ncRNA_host,overlapping_locus +15938 chr11 HAVANA gene 83083687 83084138 452.0 + 0 ENSG00000279900.1 TEC AP001767.4 2 OTTHUMG00000167012.1 overlapping_locus +15939 chr11 HAVANA gene 83072402 83097196 436.0 - 0 ENSG00000255503.1 lincRNA AP001767.3 2 OTTHUMG00000167011.1 +15940 chr11 HAVANA gene 83072066 83106719 2429.0 + 0 ENSG00000246067.7 lincRNA RAB30-AS1 2 OTTHUMG00000167010.2 overlapping_locus +15941 chr11 HAVANA gene 83106580 83106961 382.0 - 0 ENSG00000255010.1 processed_pseudogene AP001767.2 1 OTTHUMG00000167013.1 pseudo_consens +15942 chr11 HAVANA gene 83111060 83111442 383.0 - 0 ENSG00000254965.1 processed_pseudogene C1DP5 1 OTTHUMG00000167014.1 pseudo_consens +15943 chr11 HAVANA gene 83132056 83134737 632.0 + 0 ENSG00000255051.1 processed_pseudogene BCAS2P1 1 OTTHUMG00000167015.1 pseudo_consens +15944 chr11 HAVANA gene 83180144 83184520 905.0 + 0 ENSG00000254676.1 sense_overlapping AP000873.4 2 OTTHUMG00000167032.1 overlapping_locus +15945 chr11 HAVANA gene 83185521 83187036 1516.0 - 0 ENSG00000269939.1 lincRNA PCF11-AS1 2 OTTHUMG00000183952.1 overlapping_locus +15946 chr11 HAVANA gene 83156988 83187451 9951.0 + 0 ENSG00000165494.11 protein_coding PCF11 1 OTTHUMG00000167031.3 overlapping_locus +15947 chr11 HAVANA gene 83184491 83193794 2986.0 - 0 ENSG00000247137.8 processed_transcript AP000873.2 2 OTTHUMG00000167033.2 overlapping_locus +15948 chr11 HAVANA gene 83209399 83209634 236.0 + 0 ENSG00000255541.1 processed_pseudogene AP000873.5 1 OTTHUMG00000167076.1 pseudo_consens,overlapping_locus +15949 chr11 HAVANA gene 83209431 83213379 766.0 - 0 ENSG00000254551.1 antisense AP000873.3 2 OTTHUMG00000167077.1 +15950 chr11 HAVANA gene 83213005 83213404 400.0 + 0 ENSG00000241020.1 processed_pseudogene AP000873.1 2 OTTHUMG00000158433.1 overlapping_locus +15951 chr11 HAVANA gene 83193739 83260694 6724.0 + 0 ENSG00000137494.13 protein_coding ANKRD42 1 OTTHUMG00000167075.1 overlapping_locus +15952 chr11 HAVANA gene 83259097 83286407 6561.0 - 0 ENSG00000137500.9 protein_coding CCDC90B 2 OTTHUMG00000167078.2 +15953 chr11 HAVANA gene 83328926 83329246 321.0 + 0 ENSG00000255003.1 processed_pseudogene CYCSP28 1 OTTHUMG00000167092.1 pseudo_consens,overlapping_locus +15954 chr11 ENSEMBL gene 83386988 83387102 115.0 + 0 ENSG00000274004.1 misc_RNA RF01974 3 +15955 chr11 HAVANA gene 83286128 83423516 2845.0 + 0 ENSG00000255234.5 antisense AP000446.1 2 OTTHUMG00000167091.1 ncRNA_host,overlapping_locus +15956 chr11 HAVANA gene 83643602 83725390 2112.0 + 0 ENSG00000255311.5 antisense AP002370.2 1 OTTHUMG00000167144.1 +15957 chr11 HAVANA gene 83789977 83791578 1602.0 - 0 ENSG00000254629.1 processed_pseudogene AP002370.1 2 OTTHUMG00000167147.1 overlapping_locus +15958 chr11 HAVANA gene 83814571 83815263 693.0 - 0 ENSG00000250257.1 unprocessed_pseudogene LDHAL6DP 1 OTTHUMG00000160113.1 pseudo_consens,overlapping_locus +15959 chr11 HAVANA gene 84545131 84546846 967.0 - 0 ENSG00000254713.2 processed_pseudogene HNRNPA1P72 1 OTTHUMG00000167148.3 pseudo_consens,overlapping_locus +15960 chr11 HAVANA gene 84639993 84640565 573.0 + 0 ENSG00000240174.1 processed_pseudogene AP000852.1 1 OTTHUMG00000158434.1 pseudo_consens +15961 chr11 HAVANA gene 84720826 84800701 351.0 + 0 ENSG00000254787.1 antisense AP001825.1 2 OTTHUMG00000167145.1 +15962 chr11 ENSEMBL gene 84887207 84887419 213.0 + 0 ENSG00000274006.1 misc_RNA RF02112 3 +15963 chr11 ENSEMBL gene 84890744 84890961 218.0 + 0 ENSG00000276179.1 misc_RNA RF02113 3 +15964 chr11 HAVANA gene 84936689 84955705 419.0 + 0 ENSG00000255555.1 antisense AP000857.2 2 OTTHUMG00000167150.1 +15965 chr11 HAVANA gene 84997226 84997768 543.0 - 0 ENSG00000255396.2 processed_pseudogene AP000857.1 1 OTTHUMG00000167151.2 pseudo_consens,overlapping_locus +15966 chr11 HAVANA gene 85020785 85021655 871.0 - 0 ENSG00000213305.3 processed_pseudogene HNRNPCP6 1 OTTHUMG00000167152.1 pseudo_consens,overlapping_locus +15967 chr11 HAVANA gene 85336075 85336572 498.0 - 0 ENSG00000254684.1 processed_pseudogene AP002803.1 1 OTTHUMG00000167153.1 pseudo_consens,overlapping_locus +15968 chr11 HAVANA gene 85452282 85453698 1417.0 - 0 ENSG00000254897.1 processed_pseudogene AP003035.1 1 OTTHUMG00000167154.1 pseudo_consens,overlapping_locus +15969 chr11 ENSEMBL gene 85509938 85510044 107.0 + 0 ENSG00000206583.1 snRNA RNU6-1292P 3 +15970 chr11 HAVANA gene 83455012 85627922 16089.0 - 0 ENSG00000150672.17 protein_coding DLG2 1 OTTHUMG00000134309.8 overlapping_locus +15971 chr11 HAVANA gene 85628573 85636539 2416.0 + 0 ENSG00000171204.12 protein_coding TMEM126B 2 OTTHUMG00000166974.2 +15972 chr11 HAVANA gene 85647967 85656547 971.0 + 0 ENSG00000171202.6 protein_coding TMEM126A 2 OTTHUMG00000166975.1 +15973 chr11 HAVANA gene 85659708 85682908 5587.0 - 0 ENSG00000137504.13 protein_coding CREBZF 2 OTTHUMG00000133648.5 +15974 chr11 HAVANA gene 85684866 85686277 1412.0 - 0 ENSG00000179071.4 protein_coding CCDC89 2 OTTHUMG00000166976.1 +15975 chr11 HAVANA gene 85694224 85811159 11258.0 - 0 ENSG00000137501.17 protein_coding SYTL2 1 OTTHUMG00000166977.5 +15976 chr11 HAVANA gene 85852557 85854943 2387.0 - 0 ENSG00000279742.1 TEC AP000974.1 2 OTTHUMG00000187437.1 +15977 chr11 HAVANA gene 85855101 85920021 2359.0 + 0 ENSG00000150676.12 protein_coding CCDC83 2 OTTHUMG00000166978.2 +15978 chr11 HAVANA gene 85916502 85923682 448.0 - 0 ENSG00000255005.1 antisense AP003128.1 2 OTTHUMG00000166979.1 +15979 chr11 HAVANA gene 85934737 85935663 927.0 + 0 ENSG00000254479.1 processed_pseudogene SLC25A1P1 1 OTTHUMG00000166980.2 pseudo_consens +15980 chr11 HAVANA gene 85957684 86069882 5833.0 - 0 ENSG00000073921.17 protein_coding PICALM 1 OTTHUMG00000166981.4 +15981 chr11 ENSEMBL gene 86153227 86153334 108.0 + 0 ENSG00000200877.1 snRNA RNU6-560P 3 +15982 chr11 HAVANA gene 86192787 86193482 178.0 - 0 ENSG00000254699.1 lincRNA AP003097.2 2 OTTHUMG00000167207.1 +15983 chr11 HAVANA gene 86195132 86196266 1135.0 + 0 ENSG00000254502.1 processed_pseudogene AP003097.1 1 OTTHUMG00000167208.1 pseudo_consens +15984 chr11 ENSEMBL gene 86216596 86216878 283.0 + 0 ENSG00000276669.1 misc_RNA RF00017 3 +15985 chr11 ENSEMBL gene 86278333 86278398 66.0 + 0 ENSG00000283744.1 miRNA MIR6755 3 +15986 chr11 HAVANA gene 86244544 86278813 7016.0 + 0 ENSG00000074266.19 protein_coding EED 1 OTTHUMG00000167209.6 ncRNA_host +15987 chr11 HAVANA gene 86283927 86284668 742.0 + 0 ENSG00000254783.1 processed_pseudogene AP003084.1 2 OTTHUMG00000167210.1 +15988 chr11 HAVANA gene 86294760 86295576 817.0 + 0 ENSG00000255222.1 processed_pseudogene SETP17 1 OTTHUMG00000167211.1 pseudo_consens +15989 chr11 ENSEMBL gene 86324012 86324309 298.0 - 0 ENSG00000239856.3 misc_RNA RN7SL225P 3 +15990 chr11 HAVANA gene 86302211 86345931 3421.0 + 0 ENSG00000149196.15 protein_coding HIKESHI 2 OTTHUMG00000167212.2 +15991 chr11 HAVANA gene 86374736 86423109 4544.0 + 0 ENSG00000149201.9 protein_coding CCDC81 2 OTTHUMG00000167213.2 +15992 chr11 HAVANA gene 86432098 86432575 478.0 + 0 ENSG00000254727.1 transcribed_processed_pseudogene PTP4A1P6 1 OTTHUMG00000167215.1 pseudo_consens,overlapping_locus +15993 chr11 HAVANA gene 86434924 86437282 2359.0 - 0 ENSG00000278989.1 TEC AP001148.1 2 OTTHUMG00000167216.1 +15994 chr11 HAVANA gene 86431590 86622867 411.0 + 0 ENSG00000254733.1 antisense AP001831.1 2 OTTHUMG00000167214.1 overlapping_locus +15995 chr11 HAVANA gene 86441108 86672636 3838.0 - 0 ENSG00000151376.16 protein_coding ME3 2 OTTHUMG00000167217.4 +15996 chr11 HAVANA gene 86703099 86714092 432.0 + 0 ENSG00000254731.1 lincRNA AP003059.1 2 OTTHUMG00000167224.1 +15997 chr11 HAVANA gene 86727355 86765265 503.0 + 0 ENSG00000255250.1 lincRNA AP003059.2 2 OTTHUMG00000167225.1 +15998 chr11 HAVANA gene 86821143 86821728 586.0 - 0 ENSG00000271318.1 processed_pseudogene AP000654.2 1 OTTHUMG00000184803.1 pseudo_consens +15999 chr11 HAVANA gene 86832540 86833449 910.0 - 0 ENSG00000197882.3 unprocessed_pseudogene OR7E13P 2 OTTHUMG00000167227.1 +16000 chr11 HAVANA gene 86833068 86837615 1192.0 + 0 ENSG00000269895.1 lincRNA AP000654.1 2 OTTHUMG00000184076.1 overlapping_locus +16001 chr11 HAVANA gene 86857059 86857947 889.0 - 0 ENSG00000255203.1 unprocessed_pseudogene OR7E2P 1 OTTHUMG00000167228.1 pseudo_consens +16002 chr11 HAVANA gene 86908990 86912238 3249.0 - 0 ENSG00000280339.1 TEC AP001528.3 2 OTTHUMG00000167230.1 overlapping_locus +16003 chr11 HAVANA gene 86892214 86925037 1218.0 - 0 ENSG00000255471.1 antisense AP001528.2 2 OTTHUMG00000167229.1 overlapping_locus +16004 chr11 HAVANA gene 86791059 86952910 11725.0 + 0 ENSG00000150687.11 protein_coding PRSS23 2 OTTHUMG00000167226.3 overlapping_locus +16005 chr11 HAVANA gene 86945679 86955391 7383.0 - 0 ENSG00000174804.3 protein_coding FZD4 2 OTTHUMG00000167231.2 +16006 chr11 HAVANA gene 86955619 87000959 1393.0 + 0 ENSG00000246523.7 lincRNA AP001528.1 2 OTTHUMG00000167232.2 overlapping_locus +16007 chr11 HAVANA gene 87024583 87025777 888.0 + 0 ENSG00000254748.1 processed_pseudogene HNRNPCP8 1 OTTHUMG00000167234.1 pseudo_consens +16008 chr11 HAVANA gene 87094734 87096585 1852.0 - 0 ENSG00000254843.1 processed_pseudogene XIAPP2 1 OTTHUMG00000167235.1 pseudo_consens +16009 chr11 HAVANA gene 87121058 87121596 539.0 + 0 ENSG00000279836.1 TEC AP002967.1 2 OTTHUMG00000167249.1 overlapping_locus +16010 chr11 HAVANA gene 87258851 87259259 409.0 - 0 ENSG00000213287.3 processed_pseudogene AP001102.1 1 OTTHUMG00000167236.1 pseudo_consens +16011 chr11 HAVANA gene 87037844 87323758 5030.0 + 0 ENSG00000166575.16 protein_coding TMEM135 2 OTTHUMG00000167248.3 overlapping_locus +16012 chr11 HAVANA gene 87323709 87324359 651.0 - 0 ENSG00000270510.1 processed_pseudogene AP000811.1 1 OTTHUMG00000184802.1 pseudo_consens +16013 chr11 HAVANA gene 87329407 87330052 646.0 - 0 ENSG00000254582.1 processed_pseudogene PSMA2P1 1 OTTHUMG00000167250.1 pseudo_consens +16014 chr11 HAVANA gene 87480736 87481297 562.0 - 0 ENSG00000255391.1 processed_pseudogene AP003497.1 1 OTTHUMG00000167251.1 pseudo_consens +16015 chr11 HAVANA gene 87490144 87491110 967.0 + 0 ENSG00000279701.1 TEC AP003497.2 2 OTTHUMG00000167252.1 +16016 chr11 HAVANA gene 87565994 87566421 428.0 + 0 ENSG00000278929.1 TEC AP001784.1 2 OTTHUMG00000167253.1 +16017 chr11 ENSEMBL gene 87606783 87606885 103.0 + 0 ENSG00000223015.1 snRNA RNU6-1135P 3 +16018 chr11 ENSEMBL gene 87648489 87648549 61.0 - 0 ENSG00000283412.1 snRNA RF00026 3 +16019 chr11 HAVANA gene 87718354 87719411 679.0 - 0 ENSG00000255183.1 lincRNA AP000756.1 1 OTTHUMG00000167254.1 overlapping_locus +16020 chr11 HAVANA gene 87718667 87721233 2567.0 - 0 ENSG00000279341.1 TEC AP000756.2 2 OTTHUMG00000167255.1 overlapping_locus +16021 chr11 HAVANA gene 87815035 87816157 1123.0 - 0 ENSG00000254650.1 processed_pseudogene MTCYBP41 2 OTTHUMG00000167257.1 +16022 chr11 HAVANA gene 87816224 87816524 301.0 + 0 ENSG00000255022.1 processed_pseudogene AP000676.2 2 OTTHUMG00000167258.1 +16023 chr11 HAVANA gene 87816999 87817567 569.0 + 0 ENSG00000279793.1 TEC AP000676.3 2 OTTHUMG00000167259.1 +16024 chr11 HAVANA gene 87879473 87880095 623.0 - 0 ENSG00000280307.1 TEC AP000676.4 2 OTTHUMG00000167260.1 +16025 chr11 HAVANA gene 87917948 87917999 52.0 - 0 ENSG00000254794.1 processed_pseudogene AP000676.1 2 OTTHUMG00000167261.1 +16026 chr11 HAVANA gene 87847259 88045608 837.0 - 0 ENSG00000285835.1 lincRNA AP000676.5 2 OTTHUMG00000192716.1 +16027 chr11 HAVANA gene 88050106 88062110 572.0 + 0 ENSG00000255516.1 lincRNA AP005436.3 2 OTTHUMG00000167285.1 +16028 chr11 HAVANA gene 88061774 88098147 488.0 - 0 ENSG00000255102.1 lincRNA AP005436.1 2 OTTHUMG00000167286.1 +16029 chr11 ENSEMBL gene 88099995 88100105 111.0 + 0 ENSG00000206690.1 misc_RNA RF00019 3 +16030 chr11 HAVANA gene 88098591 88115835 252.0 + 0 ENSG00000255241.1 antisense AP005436.2 2 OTTHUMG00000167287.1 ncRNA_host +16031 chr11 HAVANA gene 88165575 88167691 2117.0 - 0 ENSG00000279733.1 TEC AP001642.1 2 OTTHUMG00000167289.1 overlapping_locus +16032 chr11 HAVANA gene 88113242 88175467 1465.0 - 0 ENSG00000123892.11 protein_coding RAB38 1 OTTHUMG00000167288.3 overlapping_locus +16033 chr11 ENSEMBL gene 88176502 88176593 92.0 + 0 ENSG00000266581.1 miRNA MIR3166 3 +16034 chr11 HAVANA gene 88293592 88337787 11421.0 - 0 ENSG00000109861.15 protein_coding CTSC 2 OTTHUMG00000167290.3 +16035 chr11 HAVANA gene 88408179 88409223 1045.0 - 0 ENSG00000249489.1 processed_pseudogene GAPDHP70 1 OTTHUMG00000159997.1 pseudo_consens +16036 chr11 HAVANA gene 88504576 88524054 4837.0 + 0 ENSG00000255082.1 antisense GRM5-AS1 1 OTTHUMG00000167293.1 +16037 chr11 ENSEMBL gene 88612805 88612911 107.0 - 0 ENSG00000207113.1 snRNA RNU6-16P 3 +16038 chr11 HAVANA gene 88504576 89065945 8657.0 - 0 ENSG00000168959.14 protein_coding GRM5 2 OTTHUMG00000134306.3 ncRNA_host +16039 chr11 HAVANA gene 89293745 89294246 502.0 - 0 ENSG00000197692.5 processed_pseudogene CBX3P7 1 OTTHUMG00000167295.1 pseudo_consens +16040 chr11 HAVANA gene 89177452 89295759 3016.0 + 0 ENSG00000077498.8 protein_coding TYR 2 OTTHUMG00000167294.2 +16041 chr11 HAVANA gene 89297717 89298199 483.0 + 0 ENSG00000279297.1 TEC AP000720.1 2 OTTHUMG00000167296.1 +16042 chr11 HAVANA gene 89300709 89301477 769.0 - 0 ENSG00000279603.1 TEC AP000720.2 2 OTTHUMG00000167297.1 +16043 chr11 HAVANA gene 89324356 89498187 6096.0 - 0 ENSG00000086991.12 protein_coding NOX4 2 OTTHUMG00000167298.2 +16044 chr11 HAVANA gene 89498748 89499198 451.0 - 0 ENSG00000255295.1 processed_pseudogene AP002404.1 1 OTTHUMG00000167299.1 pseudo_consens +16045 chr11 HAVANA gene 89533645 89534043 399.0 - 0 ENSG00000279248.1 TEC AP003400.4 2 OTTHUMG00000167616.1 +16046 chr11 HAVANA gene 89545128 89545744 617.0 + 0 ENSG00000279697.1 TEC AP003400.5 2 OTTHUMG00000167617.1 +16047 chr11 HAVANA gene 89548130 89548795 666.0 - 0 ENSG00000279045.1 TEC AP003400.2 2 OTTHUMG00000167619.1 overlapping_locus +16048 chr11 HAVANA gene 89556860 89557205 346.0 + 0 ENSG00000279056.1 TEC AP003400.3 2 OTTHUMG00000167620.1 +16049 chr11 HAVANA gene 89576913 89577652 740.0 + 0 ENSG00000280201.1 TEC AP003400.6 2 OTTHUMG00000167621.1 +16050 chr11 HAVANA gene 89546637 89589611 231.0 - 0 ENSG00000255429.1 lincRNA AP003400.1 2 OTTHUMG00000167618.1 overlapping_locus +16051 chr11 HAVANA gene 89639237 89698718 2495.0 + 0 ENSG00000134612.12 transcribed_unprocessed_pseudogene FOLH1B 2 OTTHUMG00000167376.4 +16052 chr11 HAVANA gene 89700764 89701325 562.0 + 0 ENSG00000255385.1 processed_pseudogene UBTFL10 1 OTTHUMG00000167622.1 pseudo_consens +16053 chr11 HAVANA gene 89704164 89704658 495.0 + 0 ENSG00000279163.1 TEC AP003122.6 2 OTTHUMG00000167623.1 +16054 chr11 HAVANA gene 89710299 89717872 1353.0 + 0 ENSG00000214414.9 protein_coding TRIM77 2 OTTHUMG00000167624.5 +16055 chr11 HAVANA gene 89723482 89727253 758.0 - 0 ENSG00000255486.1 unprocessed_pseudogene AP003122.4 2 OTTHUMG00000167625.1 +16056 chr11 HAVANA gene 89731017 89734782 3766.0 + 0 ENSG00000255540.1 processed_pseudogene AP003122.5 2 OTTHUMG00000167626.1 +16057 chr11 HAVANA gene 89752785 89753975 1191.0 - 0 ENSG00000234376.4 processed_pseudogene UBTFL2 2 OTTHUMG00000167627.1 +16058 chr11 HAVANA gene 89753982 89754953 486.0 - 0 ENSG00000254971.1 lincRNA AP003122.2 2 OTTHUMG00000167628.1 +16059 chr11 HAVANA gene 89764884 89765138 255.0 + 0 ENSG00000255170.2 processed_pseudogene AP003122.3 1 OTTHUMG00000167629.2 pseudo_consens +16060 chr11 HAVANA gene 89766440 89768836 755.0 - 0 ENSG00000204456.4 unprocessed_pseudogene AP003122.1 2 OTTHUMG00000167630.1 +16061 chr11 HAVANA gene 89776981 89782582 1573.0 + 0 ENSG00000254751.3 transcribed_unprocessed_pseudogene TRIM64DP 2 OTTHUMG00000167631.2 +16062 chr11 HAVANA gene 89785945 89787838 1454.0 + 0 ENSG00000255162.1 unprocessed_pseudogene AP004833.2 2 OTTHUMG00000167632.1 +16063 chr11 HAVANA gene 89789412 89789733 322.0 - 0 ENSG00000255285.1 processed_pseudogene AP004833.3 2 OTTHUMG00000167633.1 +16064 chr11 HAVANA gene 89797655 89808575 2163.0 - 0 ENSG00000168930.13 protein_coding TRIM49 2 OTTHUMG00000167634.2 +16065 chr11 HAVANA gene 89820082 89826922 1238.0 + 0 ENSG00000250946.2 unprocessed_pseudogene AP004833.1 2 OTTHUMG00000167635.1 +16066 chr11 HAVANA gene 89841997 89850970 1720.0 + 0 ENSG00000166013.11 unprocessed_pseudogene TRIM53BP 2 OTTHUMG00000160564.2 +16067 chr11 HAVANA gene 89854953 89862893 1359.0 + 0 ENSG00000204455.7 unprocessed_pseudogene TRIM51BP 1 OTTHUMG00000167636.2 pseudo_consens +16068 chr11 HAVANA gene 89863848 89865550 1178.0 - 0 ENSG00000254558.1 unprocessed_pseudogene AP005435.1 2 OTTHUMG00000167637.1 +16069 chr11 HAVANA gene 89869282 89876017 2689.0 - 0 ENSG00000189253.7 protein_coding TRIM64B 2 OTTHUMG00000167638.1 +16070 chr11 HAVANA gene 89883927 89886213 284.0 - 0 ENSG00000255235.1 unprocessed_pseudogene AP005435.4 2 OTTHUMG00000167639.1 +16071 chr11 HAVANA gene 89887366 89889991 590.0 + 0 ENSG00000254617.1 unprocessed_pseudogene AP005435.2 2 OTTHUMG00000167640.1 +16072 chr11 HAVANA gene 89895799 89900449 3198.0 - 0 ENSG00000254785.1 unprocessed_pseudogene AP005435.3 2 OTTHUMG00000167641.1 +16073 chr11 HAVANA gene 89908540 89909047 508.0 + 0 ENSG00000255055.1 processed_pseudogene MTND1P35 2 OTTHUMG00000167642.1 +16074 chr11 HAVANA gene 89911111 89921767 2164.0 - 0 ENSG00000223417.8 protein_coding TRIM49D1 2 OTTHUMG00000167643.2 +16075 chr11 HAVANA gene 89924064 89933063 1651.0 + 0 ENSG00000233802.8 protein_coding TRIM49D2 2 OTTHUMG00000167644.3 +16076 chr11 HAVANA gene 89944035 89949402 3915.0 + 0 ENSG00000254818.1 unprocessed_pseudogene AP004607.3 2 OTTHUMG00000167645.1 +16077 chr11 HAVANA gene 89954593 89954908 316.0 - 0 ENSG00000278837.1 processed_pseudogene AP004607.9 2 OTTHUMG00000187776.1 +16078 chr11 HAVANA gene 89955146 89957165 323.0 - 0 ENSG00000255360.1 unprocessed_pseudogene AP004607.8 2 OTTHUMG00000167646.1 +16079 chr11 HAVANA gene 89960422 89960624 203.0 + 0 ENSG00000254655.1 processed_pseudogene AP004607.1 2 OTTHUMG00000167647.1 +16080 chr11 HAVANA gene 89968502 89975228 2691.0 + 0 ENSG00000204450.7 protein_coding TRIM64 2 OTTHUMG00000167648.2 +16081 chr11 HAVANA gene 89978540 89980661 1677.0 + 0 ENSG00000255305.1 unprocessed_pseudogene AP004607.7 1 OTTHUMG00000167649.1 pseudo_consens +16082 chr11 HAVANA gene 89981441 89989559 1516.0 - 0 ENSG00000237706.4 unprocessed_pseudogene TRIM51EP 2 OTTHUMG00000167650.1 +16083 chr11 HAVANA gene 89993536 89999741 1544.0 - 0 ENSG00000225581.3 unprocessed_pseudogene TRIM53AP 2 OTTHUMG00000167651.1 +16084 chr11 HAVANA gene 90017611 90024511 1202.0 - 0 ENSG00000255184.1 unprocessed_pseudogene AP004607.6 2 OTTHUMG00000167652.1 +16085 chr11 HAVANA gene 90031106 90042025 2163.0 + 0 ENSG00000204449.3 protein_coding TRIM49C 2 OTTHUMG00000167653.1 +16086 chr11 HAVANA gene 90049945 90050266 322.0 + 0 ENSG00000254803.1 processed_pseudogene AP004607.2 2 OTTHUMG00000167654.1 +16087 chr11 HAVANA gene 90051837 90053736 1459.0 - 0 ENSG00000254916.1 unprocessed_pseudogene AP004607.4 2 OTTHUMG00000167655.1 +16088 chr11 HAVANA gene 90057605 90062999 1307.0 - 0 ENSG00000223709.6 unprocessed_pseudogene TRIM64EP 2 OTTHUMG00000167656.3 +16089 chr11 HAVANA gene 90071136 90073055 217.0 + 0 ENSG00000255011.1 unprocessed_pseudogene AP004607.5 2 OTTHUMG00000167657.1 +16090 chr11 HAVANA gene 90074839 90075096 258.0 - 0 ENSG00000254888.2 processed_pseudogene AP000827.1 1 OTTHUMG00000167658.2 pseudo_consens +16091 chr11 HAVANA gene 90085950 90087131 1182.0 + 0 ENSG00000255009.4 protein_coding UBTFL1 2 OTTHUMG00000155291.5 retrogene +16092 chr11 HAVANA gene 90098421 90098817 397.0 - 0 ENSG00000254436.1 processed_pseudogene AP000648.1 2 OTTHUMG00000167659.1 +16093 chr11 ENSEMBL gene 90118391 90118461 71.0 + 0 ENSG00000207299.1 snoRNA RF00275 3 +16094 chr11 HAVANA gene 90125658 90126061 404.0 + 0 ENSG00000279299.1 TEC AP000648.2 2 OTTHUMG00000167660.1 +16095 chr11 HAVANA gene 90131515 90192894 7254.0 + 0 ENSG00000077616.10 protein_coding NAALAD2 1 OTTHUMG00000166368.5 +16096 chr11 HAVANA gene 90193614 90198120 4507.0 + 0 ENSG00000280385.1 TEC AP000648.3 2 OTTHUMG00000167661.2 +16097 chr11 HAVANA gene 90201160 90223364 10655.0 - 0 ENSG00000110172.11 protein_coding CHORDC1 2 OTTHUMG00000167305.3 +16098 chr11 HAVANA gene 90223153 90226538 3386.0 + 0 ENSG00000280367.1 TEC AP002364.1 2 OTTHUMG00000167306.1 +16099 chr11 HAVANA gene 90282560 90284172 1613.0 + 0 ENSG00000214391.3 processed_pseudogene TUBAP2 1 OTTHUMG00000167307.1 pseudo_consens,overlapping_locus +16100 chr11 ENSEMBL gene 90555774 90555857 84.0 - 0 ENSG00000266703.1 miRNA MIR4490 3 +16101 chr11 HAVANA gene 90731110 90731723 614.0 + 0 ENSG00000280430.1 TEC AP002782.1 2 OTTHUMG00000167308.1 overlapping_locus +16102 chr11 ENSEMBL gene 90869121 90869202 82.0 - 0 ENSG00000221586.1 miRNA MIR1261 3 +16103 chr11 HAVANA gene 90251204 90915052 3175.0 + 0 ENSG00000261645.6 processed_transcript DISC1FP1 2 OTTHUMG00000167309.4 overlapping_locus +16104 chr11 HAVANA gene 90972316 90972521 206.0 - 0 ENSG00000280085.1 TEC AP001002.3 2 OTTHUMG00000167310.1 +16105 chr11 HAVANA gene 91013787 91015299 1513.0 + 0 ENSG00000279209.1 TEC AP001002.1 2 OTTHUMG00000167311.1 +16106 chr11 HAVANA gene 91093875 91094260 386.0 - 0 ENSG00000279438.1 TEC AP001002.2 2 OTTHUMG00000167312.1 +16107 chr11 HAVANA gene 91114724 91115951 1228.0 - 0 ENSG00000254677.1 processed_pseudogene OSBPL9P2 1 OTTHUMG00000167313.1 pseudo_consens +16108 chr11 HAVANA gene 91115961 91116555 595.0 + 0 ENSG00000255070.1 processed_pseudogene OSBPL9P3 1 OTTHUMG00000167314.1 pseudo_consens +16109 chr11 HAVANA gene 91158083 91167294 504.0 + 0 ENSG00000255187.1 lincRNA AP003386.1 1 OTTHUMG00000167315.1 +16110 chr11 HAVANA gene 91184934 91185543 610.0 - 0 ENSG00000280124.1 TEC AP003485.2 2 OTTHUMG00000167316.1 +16111 chr11 HAVANA gene 91208838 91209590 753.0 - 0 ENSG00000278980.1 TEC AP003485.1 2 OTTHUMG00000167317.1 +16112 chr11 HAVANA gene 91382909 91383289 381.0 + 0 ENSG00000280093.1 TEC AP002791.1 2 OTTHUMG00000167329.1 +16113 chr11 HAVANA gene 91794362 91812294 1542.0 + 0 ENSG00000255332.7 lincRNA AP003028.1 1 OTTHUMG00000167330.3 +16114 chr11 HAVANA gene 91949731 91950034 304.0 - 0 ENSG00000254961.1 processed_pseudogene TUBB4BP4 2 OTTHUMG00000167333.1 +16115 chr11 HAVANA gene 91992833 91993255 423.0 + 0 ENSG00000278859.1 TEC AP002799.1 2 OTTHUMG00000167334.1 +16116 chr11 HAVANA gene 92161106 92161889 784.0 + 0 ENSG00000242248.2 processed_pseudogene RPL7AP57 1 OTTHUMG00000158435.2 pseudo_consens +16117 chr11 HAVANA gene 92336032 92336496 465.0 - 0 ENSG00000235547.3 processed_pseudogene NDUFB11P1 1 OTTHUMG00000154744.3 pseudo_consens +16118 chr11 HAVANA gene 92366496 92367250 755.0 - 0 ENSG00000249255.1 processed_pseudogene PGAM1P9 1 OTTHUMG00000160131.1 pseudo_consens +16119 chr11 HAVANA gene 92400191 92408176 775.0 - 0 ENSG00000254705.1 antisense AP000722.1 2 OTTHUMG00000167359.1 +16120 chr11 HAVANA gene 92498152 92498935 784.0 - 0 ENSG00000244244.2 processed_pseudogene RPS3AP42 1 OTTHUMG00000158439.2 pseudo_consens +16121 chr11 HAVANA gene 92748732 92766867 583.0 - 0 ENSG00000255506.1 antisense AP003718.1 2 OTTHUMG00000167360.1 +16122 chr11 HAVANA gene 92352096 92896470 19280.0 + 0 ENSG00000165323.15 protein_coding FAT3 2 OTTHUMG00000154468.4 +16123 chr11 HAVANA gene 92914272 92915604 706.0 - 0 ENSG00000282916.1 lincRNA AP003171.3 2 OTTHUMG00000191555.1 +16124 chr11 HAVANA gene 92914603 92931322 1256.0 + 0 ENSG00000255127.3 transcribed_unprocessed_pseudogene AP003171.2 2 OTTHUMG00000167361.5 +16125 chr11 HAVANA gene 92937441 92937666 226.0 + 0 ENSG00000255287.1 processed_pseudogene SNRPGP16 1 OTTHUMG00000167362.1 pseudo_consens +16126 chr11 HAVANA gene 92965797 92966603 266.0 + 0 ENSG00000254874.1 lincRNA AP003171.1 1 OTTHUMG00000167363.1 +16127 chr11 HAVANA gene 92969720 92985066 1956.0 + 0 ENSG00000134640.2 protein_coding MTNR1B 1 OTTHUMG00000167364.1 +16128 chr11 HAVANA gene 93052395 93052827 433.0 - 0 ENSG00000242807.1 processed_pseudogene RPL26P31 1 OTTHUMG00000158440.1 pseudo_consens +16129 chr11 HAVANA gene 93071529 93072031 503.0 + 0 ENSG00000278892.1 TEC AP002371.1 2 OTTHUMG00000167365.1 +16130 chr11 HAVANA gene 93133855 93134164 310.0 + 0 ENSG00000279304.1 TEC AP003072.4 2 OTTHUMG00000167366.1 +16131 chr11 HAVANA gene 93152075 93152750 676.0 + 0 ENSG00000255445.1 processed_pseudogene AP003072.2 2 OTTHUMG00000167369.1 +16132 chr11 HAVANA gene 93171134 93171906 773.0 + 0 ENSG00000280379.1 TEC AP003072.5 2 OTTHUMG00000167370.1 +16133 chr11 HAVANA gene 93144171 93197964 9685.0 - 0 ENSG00000180773.14 protein_coding SLC36A4 1 OTTHUMG00000167368.4 +16134 chr11 HAVANA gene 93206990 93207583 594.0 - 0 ENSG00000279269.1 TEC AP003072.3 2 OTTHUMG00000167371.1 +16135 chr11 HAVANA gene 93221486 93221630 145.0 - 0 ENSG00000233737.3 processed_pseudogene AP003072.1 2 OTTHUMG00000167372.1 +16136 chr11 HAVANA gene 93240133 93241168 400.0 + 0 ENSG00000255233.1 lincRNA AP003969.1 2 OTTHUMG00000167521.1 +16137 chr11 HAVANA gene 93286629 93288903 2275.0 - 0 ENSG00000279684.1 TEC AP003969.2 2 OTTHUMG00000167522.1 +16138 chr11 HAVANA gene 93329971 93438487 4227.0 + 0 ENSG00000165325.13 protein_coding DEUP1 1 OTTHUMG00000167441.5 +16139 chr11 HAVANA gene 93535468 93535816 349.0 + 0 ENSG00000234106.3 processed_pseudogene SRP14P2 1 OTTHUMG00000167443.1 pseudo_consens +16140 chr11 HAVANA gene 93478472 93543508 1223.0 - 0 ENSG00000166002.6 protein_coding SMCO4 2 OTTHUMG00000167442.3 +16141 chr11 ENSEMBL gene 93556913 93557206 294.0 + 0 ENSG00000240202.3 misc_RNA RN7SL223P 3 +16142 chr11 HAVANA gene 93587703 93588559 857.0 + 0 ENSG00000279454.1 TEC AP003499.3 2 OTTHUMG00000167445.1 +16143 chr11 HAVANA gene 93592187 93592669 483.0 + 0 ENSG00000278953.1 TEC AP003499.2 2 OTTHUMG00000167447.1 +16144 chr11 HAVANA gene 93609760 93610333 574.0 - 0 ENSG00000255515.1 processed_pseudogene AP003499.1 1 OTTHUMG00000167448.1 pseudo_consens +16145 chr11 ENSEMBL gene 93719603 93719715 113.0 + 0 ENSG00000199875.1 misc_RNA RF00019 3 +16146 chr11 ENSEMBL gene 93721542 93721621 80.0 + 0 ENSG00000275146.1 snoRNA RF00494 3 +16147 chr11 HAVANA gene 93721513 93721865 353.0 + 0 ENSG00000254911.3 antisense SCARNA9 2 OTTHUMG00000167450.2 ncRNA_host,overlapping_locus +16148 chr11 ENSEMBL gene 93721797 93721866 70.0 + 0 ENSG00000273885.1 snoRNA RF00493 3 +16149 chr11 HAVANA gene 93726654 93729805 3152.0 - 0 ENSG00000279696.1 TEC AP001273.1 2 OTTHUMG00000167487.1 +16150 chr11 HAVANA gene 93661639 93730358 9495.0 + 0 ENSG00000166004.14 protein_coding CEP295 1 OTTHUMG00000167449.4 ncRNA_host,overlapping_locus +16151 chr11 ENSEMBL gene 93730513 93730646 134.0 - 0 ENSG00000207112.1 snoRNA SNORA25 3 +16152 chr11 ENSEMBL gene 93730979 93731099 121.0 - 0 ENSG00000206799.1 snoRNA SNORA32 3 +16153 chr11 ENSEMBL gene 93731502 93731574 73.0 - 0 ENSG00000202314.1 snoRNA SNORD6 3 +16154 chr11 ENSEMBL gene 93732004 93732133 130.0 - 0 ENSG00000206834.1 snoRNA SNORA1 3 +16155 chr11 ENSEMBL gene 93732361 93732499 139.0 - 0 ENSG00000207304.1 snoRNA SNORA8 3 +16156 chr11 ENSEMBL gene 93733228 93733300 73.0 - 0 ENSG00000239195.1 snoRNA SNORD5 3 +16157 chr11 ENSEMBL gene 93733466 93733597 132.0 - 0 ENSG00000207145.1 snoRNA SNORA18 3 +16158 chr11 ENSEMBL gene 93733674 93733764 91.0 - 0 ENSG00000284458.1 miRNA MIR1304 3 +16159 chr11 ENSEMBL gene 93735111 93735236 126.0 - 0 ENSG00000210825.1 snoRNA SNORA40 3 +16160 chr11 HAVANA gene 93741591 93764749 6269.0 + 0 ENSG00000182919.14 protein_coding C11orf54 2 OTTHUMG00000167452.4 overlapping_locus +16161 chr11 HAVANA gene 93729948 93784391 8420.0 - 0 ENSG00000166012.16 protein_coding TAF1D 2 OTTHUMG00000167451.5 ncRNA_host +16162 chr11 HAVANA gene 93741664 93812378 2993.0 + 0 ENSG00000284057.1 protein_coding AP001273.2 2 OTTHUMG00000191958.1 overlapping_locus +16163 chr11 HAVANA gene 93784227 93814963 16610.0 + 0 ENSG00000042429.11 protein_coding MED17 1 OTTHUMG00000167497.5 overlapping_locus +16164 chr11 ENSEMBL gene 93827622 93827734 113.0 + 0 ENSG00000206911.1 misc_RNA RF00019 3 +16165 chr11 HAVANA gene 93818232 93850531 3849.0 - 0 ENSG00000214376.5 protein_coding VSTM5 2 OTTHUMG00000154159.2 +16166 chr11 HAVANA gene 93991346 93991429 84.0 - 0 ENSG00000255995.1 processed_pseudogene AP002795.1 2 OTTHUMG00000167750.1 +16167 chr11 HAVANA gene 93998643 93999218 576.0 - 0 ENSG00000256752.1 processed_pseudogene HPRT1P3 1 OTTHUMG00000167744.2 pseudo_consens +16168 chr11 HAVANA gene 94055023 94055972 950.0 - 0 ENSG00000227593.2 processed_pseudogene PHBP16 1 OTTHUMG00000167752.1 pseudo_consens +16169 chr11 HAVANA gene 94021361 94113751 5345.0 + 0 ENSG00000181333.11 protein_coding HEPHL1 2 OTTHUMG00000167751.2 +16170 chr11 HAVANA gene 94128928 94181972 2769.0 + 0 ENSG00000110218.8 protein_coding PANX1 2 OTTHUMG00000167757.1 +16171 chr11 HAVANA gene 94188449 94188997 549.0 - 0 ENSG00000256745.1 processed_pseudogene AP002784.2 1 OTTHUMG00000167753.1 pseudo_consens +16172 chr11 HAVANA gene 94238150 94279206 723.0 + 0 ENSG00000250519.6 lincRNA AP002784.1 1 OTTHUMG00000167754.2 +16173 chr11 HAVANA gene 94305592 94307721 827.0 + 0 ENSG00000183560.9 protein_coding IZUMO1R 1 OTTHUMG00000167776.4 +16174 chr11 HAVANA gene 94377311 94401419 4282.0 - 0 ENSG00000123901.8 protein_coding GPR83 1 OTTHUMG00000167779.2 +16175 chr11 ENSEMBL gene 94466495 94466580 86.0 - 0 ENSG00000221230.1 miRNA MIR548L 3 +16176 chr11 HAVANA gene 94472908 94473570 581.0 - 0 ENSG00000255893.1 antisense AP000786.1 2 OTTHUMG00000167781.1 overlapping_locus +16177 chr11 HAVANA gene 94415578 94493908 7689.0 - 0 ENSG00000020922.12 protein_coding MRE11 2 OTTHUMG00000167780.6 ncRNA_host,overlapping_locus +16178 chr11 HAVANA gene 94493629 94499583 3526.0 + 0 ENSG00000168876.8 protein_coding ANKRD49 1 OTTHUMG00000167793.4 +16179 chr11 HAVANA gene 94512432 94532123 701.0 + 0 ENSG00000257057.2 protein_coding C11orf97 2 OTTHUMG00000167794.2 +16180 chr11 HAVANA gene 94543840 94549898 6059.0 + 0 ENSG00000196371.3 protein_coding FUT4 2 OTTHUMG00000167795.2 overlapping_locus +16181 chr11 HAVANA gene 94559018 94559374 357.0 + 0 ENSG00000280167.1 TEC AP000943.4 2 OTTHUMG00000167808.1 overlapping_locus +16182 chr11 HAVANA gene 94543840 94621421 4558.0 + 0 ENSG00000134627.11 protein_coding PIWIL4 2 OTTHUMG00000167811.2 overlapping_locus +16183 chr11 HAVANA gene 94638038 94640833 712.0 + 0 ENSG00000233536.2 lincRNA AP000943.1 2 OTTHUMG00000167809.1 +16184 chr11 HAVANA gene 94638045 94652884 2977.0 + 0 ENSG00000255666.6 lincRNA AP000943.2 2 OTTHUMG00000167810.2 +16185 chr11 HAVANA gene 94545330 94740355 1175.0 - 0 ENSG00000255929.5 antisense AP000943.3 2 OTTHUMG00000167821.1 +16186 chr11 HAVANA gene 94706431 94876753 10035.0 + 0 ENSG00000166025.17 protein_coding AMOTL1 1 OTTHUMG00000167828.4 +16187 chr11 HAVANA gene 94913047 94913766 720.0 + 0 ENSG00000213368.3 processed_pseudogene ST13P11 1 OTTHUMG00000167837.1 pseudo_consens +16188 chr11 HAVANA gene 94874052 94925521 593.0 - 0 ENSG00000256469.1 antisense AP002383.2 2 OTTHUMG00000167864.1 +16189 chr11 HAVANA gene 94962622 94973612 2758.0 - 0 ENSG00000150316.11 protein_coding CWC15 2 OTTHUMG00000181616.2 +16190 chr11 HAVANA gene 94973681 94999518 2978.0 + 0 ENSG00000186280.6 protein_coding KDM4D 2 OTTHUMG00000167838.4 retrogene +16191 chr11 HAVANA gene 95011858 95012532 675.0 + 0 ENSG00000255653.1 unprocessed_pseudogene AP002383.1 2 OTTHUMG00000167857.1 +16192 chr11 HAVANA gene 95025258 95027596 2339.0 + 0 ENSG00000235268.2 protein_coding KDM4E 2 OTTHUMG00000167858.1 retrogene +16193 chr11 HAVANA gene 95030549 95031245 697.0 + 0 ENSG00000274486.1 unprocessed_pseudogene AP002383.5 2 OTTHUMG00000187777.1 +16194 chr11 HAVANA gene 95037482 95039811 1547.0 + 0 ENSG00000256779.2 transcribed_processed_pseudogene AP002383.3 1 OTTHUMG00000167859.2 pseudo_consens +16195 chr11 HAVANA gene 95040411 95041571 1161.0 + 0 ENSG00000257012.1 unprocessed_pseudogene AP002383.4 1 OTTHUMG00000167861.1 pseudo_consens +16196 chr11 HAVANA gene 95049422 95051338 1917.0 + 0 ENSG00000255855.2 protein_coding KDM4F 2 OTTHUMG00000167862.2 +16197 chr11 HAVANA gene 95057282 95057984 703.0 + 0 ENSG00000277984.1 unprocessed_pseudogene AP001264.1 2 OTTHUMG00000187778.1 +16198 chr11 HAVANA gene 95067197 95071224 4028.0 + 0 ENSG00000263465.4 protein_coding SRSF8 2 OTTHUMG00000188534.3 retrogene +16199 chr11 HAVANA gene 95089810 95132645 4687.0 + 0 ENSG00000149218.4 protein_coding ENDOD1 2 OTTHUMG00000167835.1 +16200 chr11 HAVANA gene 95143637 95145125 1489.0 + 0 ENSG00000270689.1 processed_pseudogene BUD13P1 1 OTTHUMG00000184754.1 pseudo_consens +16201 chr11 HAVANA gene 95145437 95146004 568.0 + 0 ENSG00000270578.1 processed_pseudogene AP000787.2 2 OTTHUMG00000184755.1 +16202 chr11 HAVANA gene 95203727 95204033 307.0 + 0 ENSG00000282834.1 processed_pseudogene AP000787.3 1 OTTHUMG00000191499.1 pseudo_consens +16203 chr11 HAVANA gene 95165513 95232541 10573.0 - 0 ENSG00000149212.11 protein_coding SESN3 1 OTTHUMG00000167829.5 +16204 chr11 HAVANA gene 95150539 95234104 5320.0 + 0 ENSG00000245552.6 antisense AP000787.1 2 OTTHUMG00000167830.2 +16205 chr11 HAVANA gene 95482406 95497553 570.0 + 0 ENSG00000250390.2 lincRNA AP001790.1 2 OTTHUMG00000167737.1 +16206 chr11 HAVANA gene 95698086 95700623 506.0 + 0 ENSG00000255605.1 lincRNA AP000820.1 2 OTTHUMG00000167738.1 +16207 chr11 HAVANA gene 95571040 95748715 1354.0 + 0 ENSG00000285842.1 lincRNA AP000820.2 2 OTTHUMG00000192771.1 +16208 chr11 HAVANA gene 95756959 95757442 484.0 - 0 ENSG00000273600.1 processed_pseudogene AP001877.1 2 OTTHUMG00000187779.1 +16209 chr11 HAVANA gene 95768942 95790409 6042.0 - 0 ENSG00000077458.12 protein_coding FAM76B 2 OTTHUMG00000167739.2 +16210 chr11 HAVANA gene 95789965 95832693 7101.0 + 0 ENSG00000166037.10 protein_coding CEP57 1 OTTHUMG00000167740.2 +16211 chr11 ENSEMBL gene 95840017 95840124 108.0 - 0 ENSG00000222578.1 rRNA_pseudogene RNA5SP345 3 +16212 chr11 HAVANA gene 95832882 95925315 6119.0 - 0 ENSG00000087053.18 protein_coding MTMR2 2 OTTHUMG00000153837.3 +16213 chr11 HAVANA gene 95963219 95963624 406.0 + 0 ENSG00000242993.1 processed_pseudogene AP000870.1 1 OTTHUMG00000158441.2 pseudo_consens +16214 chr11 HAVANA gene 96092374 96137827 904.0 + 0 ENSG00000285921.1 lincRNA AP000779.1 2 OTTHUMG00000193030.1 +16215 chr11 ENSEMBL gene 96341438 96341526 89.0 + 0 ENSG00000266192.3 miRNA MIR1260B 3 +16216 chr11 HAVANA gene 95976598 96343180 7109.0 - 0 ENSG00000184384.13 protein_coding MAML2 2 OTTHUMG00000167677.2 +16217 chr11 HAVANA gene 96352769 96389956 17313.0 - 0 ENSG00000149231.13 protein_coding CCDC82 2 OTTHUMG00000167678.5 +16218 chr11 ENSEMBL gene 96474572 96474692 121.0 - 0 ENSG00000200411.1 rRNA_pseudogene RNA5SP346 3 +16219 chr11 HAVANA gene 96447132 96506826 426.0 - 0 ENSG00000255679.1 lincRNA JRKL-AS1 2 OTTHUMG00000167708.1 +16220 chr11 HAVANA gene 96389989 96507574 3511.0 + 0 ENSG00000183340.6 protein_coding JRKL 2 OTTHUMG00000154950.2 +16221 chr11 HAVANA gene 96508425 96514748 404.0 + 0 ENSG00000256684.1 lincRNA AP003781.1 2 OTTHUMG00000167709.1 +16222 chr11 HAVANA gene 96642671 96643225 555.0 - 0 ENSG00000255376.1 processed_pseudogene AP003066.2 1 OTTHUMG00000167666.1 pseudo_consens +16223 chr11 HAVANA gene 96590317 96713822 1647.0 + 0 ENSG00000254587.1 lincRNA AP003066.1 2 OTTHUMG00000167665.1 +16224 chr11 HAVANA gene 97000274 97000711 438.0 - 0 ENSG00000255205.1 processed_pseudogene MED28P5 1 OTTHUMG00000167667.1 pseudo_consens +16225 chr11 HAVANA gene 97086160 97086682 523.0 - 0 ENSG00000270753.1 processed_pseudogene AP001836.1 1 OTTHUMG00000184799.1 pseudo_consens +16226 chr11 HAVANA gene 97222644 97259987 734.0 - 0 ENSG00000255039.1 lincRNA LINC02553 2 OTTHUMG00000167664.1 +16227 chr11 ENSEMBL gene 97657464 97657582 119.0 + 0 ENSG00000199315.1 rRNA_pseudogene RNA5SP347 3 +16228 chr11 HAVANA gene 97908253 97908537 285.0 - 0 ENSG00000254555.1 processed_pseudogene AP003730.1 2 OTTHUMG00000167598.1 overlapping_locus +16229 chr11 HAVANA gene 97878781 97942762 1100.0 - 0 ENSG00000255502.5 lincRNA AP003730.2 2 OTTHUMG00000167597.1 overlapping_locus +16230 chr11 HAVANA gene 98130239 98131198 960.0 - 0 ENSG00000255380.1 processed_pseudogene AP001317.1 2 OTTHUMG00000167599.1 +16231 chr11 HAVANA gene 98565074 98566827 1754.0 - 0 ENSG00000254939.1 processed_pseudogene AP003038.1 2 OTTHUMG00000167600.1 +16232 chr11 HAVANA gene 98676391 98683735 435.0 + 0 ENSG00000254599.1 lincRNA AP003715.1 2 OTTHUMG00000167601.1 +16233 chr11 HAVANA gene 98938912 98945079 380.0 - 0 ENSG00000254830.1 lincRNA AP002428.1 2 OTTHUMG00000167602.1 +16234 chr11 ENSEMBL gene 99120176 99120490 315.0 + 0 ENSG00000223269.1 misc_RNA RN7SKP53 3 +16235 chr11 HAVANA gene 100336856 100337625 770.0 + 0 ENSG00000255547.1 processed_pseudogene RPA2P3 1 OTTHUMG00000167592.1 pseudo_consens,overlapping_locus +16236 chr11 HAVANA gene 99020953 100358885 9103.0 + 0 ENSG00000149972.10 protein_coding CNTN5 2 OTTHUMG00000167579.2 ncRNA_host,overlapping_locus +16237 chr11 ENSEMBL gene 100641975 100642273 299.0 - 0 ENSG00000242165.3 misc_RNA RN7SL222P 3 +16238 chr11 HAVANA gene 100666459 100666962 504.0 + 0 ENSG00000255059.1 processed_pseudogene PPIAP43 1 OTTHUMG00000167575.1 pseudo_consens +16239 chr11 HAVANA gene 100684162 100687955 1865.0 - 0 ENSG00000248027.1 antisense AP001351.1 2 OTTHUMG00000167576.1 +16240 chr11 ENSEMBL gene 100839630 100839946 317.0 + 0 ENSG00000200047.1 misc_RNA RN7SKP115 3 +16241 chr11 HAVANA gene 100687653 100993941 8948.0 + 0 ENSG00000165895.18 protein_coding ARHGAP42 2 OTTHUMG00000167530.4 ncRNA_host +16242 chr11 HAVANA gene 101029624 101130524 15404.0 - 0 ENSG00000082175.14 protein_coding PGR 2 OTTHUMG00000167531.3 +16243 chr11 HAVANA gene 101208905 101209450 546.0 + 0 ENSG00000255504.2 transcribed_processed_pseudogene AP001533.1 1 OTTHUMG00000191409.1 pseudo_consens,overlapping_locus +16244 chr11 HAVANA gene 101129077 101209591 1794.0 + 0 ENSG00000282728.1 processed_transcript PGR-AS1 2 OTTHUMG00000167532.2 overlapping_locus +16245 chr11 ENSEMBL gene 101519820 101519905 86.0 - 0 ENSG00000263885.1 miRNA MIR3920 3 +16246 chr11 HAVANA gene 101584295 101595156 2371.0 + 0 ENSG00000254506.1 transcribed_processed_pseudogene AP003080.1 1 OTTHUMG00000167485.1 pseudo_consens +16247 chr11 HAVANA gene 101765935 101769961 1663.0 - 0 ENSG00000254534.1 unprocessed_pseudogene AP000776.1 1 OTTHUMG00000167499.1 pseudo_consens,overlapping_locus +16248 chr11 HAVANA gene 101451564 101872562 5537.0 - 0 ENSG00000137672.12 protein_coding TRPC6 1 OTTHUMG00000167483.3 ncRNA_host,overlapping_locus +16249 chr11 HAVANA gene 101890674 101916522 2368.0 - 0 ENSG00000187151.7 protein_coding ANGPTL5 2 OTTHUMG00000167318.2 +16250 chr11 HAVANA gene 101915015 102001058 8191.0 + 0 ENSG00000110318.13 protein_coding CEP126 2 OTTHUMG00000167319.2 +16251 chr11 ENSEMBL gene 102057854 102057960 107.0 + 0 ENSG00000274097.1 rRNA RNA5SP535 3 +16252 chr11 HAVANA gene 102047443 102084560 2647.0 + 0 ENSG00000137691.12 protein_coding CFAP300 1 OTTHUMG00000167320.1 ncRNA_host +16253 chr11 HAVANA gene 102107886 102109842 1957.0 + 0 ENSG00000260008.1 lincRNA AP001527.1 2 OTTHUMG00000167321.1 +16254 chr11 HAVANA gene 102109827 102110457 631.0 - 0 ENSG00000277459.1 lincRNA AP001527.2 2 OTTHUMG00000188237.1 +16255 chr11 HAVANA gene 102229851 102230922 628.0 - 0 ENSG00000254422.1 antisense AP000942.2 2 OTTHUMG00000167323.1 +16256 chr11 HAVANA gene 102110461 102233423 6296.0 + 0 ENSG00000137693.13 protein_coding YAP1 1 OTTHUMG00000167322.3 +16257 chr11 HAVANA gene 102295060 102295806 747.0 + 0 ENSG00000243777.1 processed_pseudogene AP000942.1 1 OTTHUMG00000158444.1 pseudo_consens +16258 chr11 HAVANA gene 102306112 102306271 160.0 + 0 ENSG00000270868.1 processed_pseudogene AP000942.3 1 OTTHUMG00000184750.1 pseudo_consens +16259 chr11 HAVANA gene 102308557 102308797 241.0 - 0 ENSG00000271600.1 processed_pseudogene AP000942.4 1 OTTHUMG00000184796.1 pseudo_consens +16260 chr11 ENSEMBL gene 102313722 102313829 108.0 + 0 ENSG00000212466.1 snRNA RNU6-952P 3 +16261 chr11 HAVANA gene 102317450 102339403 7518.0 + 0 ENSG00000023445.13 protein_coding BIRC3 1 OTTHUMG00000167324.4 +16262 chr11 HAVANA gene 102347211 102378670 4532.0 + 0 ENSG00000110330.8 protein_coding BIRC2 1 OTTHUMG00000167325.2 +16263 chr11 HAVANA gene 102452919 102462008 692.0 + 0 ENSG00000255337.1 antisense AP001830.1 2 OTTHUMG00000167327.1 +16264 chr11 HAVANA gene 102396332 102470384 4647.0 - 0 ENSG00000152558.14 protein_coding TMEM123 2 OTTHUMG00000167326.3 +16265 chr11 HAVANA gene 102467255 102498801 494.0 + 0 ENSG00000255482.1 antisense AP001830.2 1 OTTHUMG00000167328.1 +16266 chr11 HAVANA gene 102520508 102530753 2323.0 - 0 ENSG00000137673.8 protein_coding MMP7 2 OTTHUMG00000048193.2 +16267 chr11 HAVANA gene 102576835 102625332 2551.0 - 0 ENSG00000137674.3 protein_coding MMP20 2 OTTHUMG00000168081.2 +16268 chr11 HAVANA gene 102606916 102628070 1400.0 + 0 ENSG00000256916.1 antisense AP000851.1 2 OTTHUMG00000168097.1 +16269 chr11 HAVANA gene 102681310 102683913 721.0 + 0 ENSG00000281655.1 lincRNA AP000851.2 2 OTTHUMG00000168098.2 +16270 chr11 HAVANA gene 102691487 102705806 1913.0 - 0 ENSG00000137675.4 protein_coding MMP27 2 OTTHUMG00000168099.1 +16271 chr11 HAVANA gene 102711795 102727050 3438.0 - 0 ENSG00000118113.11 protein_coding MMP8 1 OTTHUMG00000167587.3 +16272 chr11 HAVANA gene 102751070 102754943 1000.0 - 0 ENSG00000225678.2 transcribed_unprocessed_pseudogene AP000619.1 2 OTTHUMG00000168082.3 +16273 chr11 HAVANA gene 102766801 102767927 1127.0 - 0 ENSG00000256254.1 processed_pseudogene AP000619.3 1 OTTHUMG00000168129.1 pseudo_consens +16274 chr11 HAVANA gene 102770503 102780628 1758.0 - 0 ENSG00000166670.9 protein_coding MMP10 2 OTTHUMG00000168083.2 +16275 chr11 HAVANA gene 102789920 102798160 1970.0 - 0 ENSG00000196611.4 protein_coding MMP1 2 OTTHUMG00000048192.1 +16276 chr11 HAVANA gene 102806948 102807916 969.0 - 0 ENSG00000256035.1 processed_pseudogene AP000619.2 1 OTTHUMG00000168130.1 pseudo_consens +16277 chr11 HAVANA gene 102746968 102836766 3331.0 + 0 ENSG00000255282.6 transcribed_processed_pseudogene WTAPP1 1 OTTHUMG00000165847.4 pseudo_consens +16278 chr11 HAVANA gene 102835801 102843803 2048.0 - 0 ENSG00000149968.11 protein_coding MMP3 2 OTTHUMG00000048254.3 +16279 chr11 HAVANA gene 102862736 102875034 1874.0 - 0 ENSG00000262406.2 protein_coding MMP12 2 OTTHUMG00000165848.3 +16280 chr11 HAVANA gene 102880492 102880846 355.0 + 0 ENSG00000255469.1 processed_pseudogene BOLA3P1 1 OTTHUMG00000165849.1 pseudo_consens +16281 chr11 ENSEMBL gene 102903892 102903953 62.0 - 0 ENSG00000238562.1 snRNA RNU7-159P 3 +16282 chr11 HAVANA gene 102942995 102955734 2834.0 - 0 ENSG00000137745.11 protein_coding MMP13 1 OTTHUMG00000165850.2 +16283 chr11 HAVANA gene 102963460 102966628 372.0 - 0 ENSG00000276521.1 unprocessed_pseudogene AP001486.3 2 OTTHUMG00000187782.1 +16284 chr11 HAVANA gene 103045237 103045712 476.0 + 0 ENSG00000239861.1 processed_pseudogene AP001486.1 1 OTTHUMG00000158445.1 pseudo_consens +16285 chr11 HAVANA gene 103050687 103055799 5113.0 - 0 ENSG00000260966.1 sense_overlapping AP001486.2 2 OTTHUMG00000173208.1 +16286 chr11 HAVANA gene 103062076 103092215 1700.0 - 0 ENSG00000137692.11 protein_coding DCUN1D5 1 OTTHUMG00000165822.3 +16287 chr11 HAVANA gene 103252217 103293705 778.0 - 0 ENSG00000285878.1 antisense AP002961.1 2 OTTHUMG00000192650.1 +16288 chr11 HAVANA gene 103402013 103402586 574.0 - 0 ENSG00000254895.2 processed_pseudogene MTCO3P15 2 OTTHUMG00000165942.2 +16289 chr11 HAVANA gene 103402588 103403422 835.0 - 0 ENSG00000254931.2 processed_pseudogene MTATP6P15 2 OTTHUMG00000165943.2 +16290 chr11 HAVANA gene 103403512 103404167 656.0 - 0 ENSG00000255417.1 processed_pseudogene MTCO2P15 2 OTTHUMG00000165945.1 +16291 chr11 HAVANA gene 103404309 103405834 1526.0 - 0 ENSG00000255350.1 processed_pseudogene MTCO1P15 2 OTTHUMG00000165946.1 +16292 chr11 HAVANA gene 103406213 103407241 1029.0 - 0 ENSG00000254565.1 processed_pseudogene MTND2P26 2 OTTHUMG00000165947.1 +16293 chr11 HAVANA gene 103407441 103408376 936.0 - 0 ENSG00000253245.2 processed_pseudogene MTND1P36 2 OTTHUMG00000165948.1 +16294 chr11 HAVANA gene 103409580 103409657 78.0 - 0 ENSG00000254824.1 processed_pseudogene AP003461.1 2 OTTHUMG00000165949.1 +16295 chr11 HAVANA gene 103109410 103479863 15012.0 + 0 ENSG00000187240.14 protein_coding DYNC2H1 2 OTTHUMG00000165941.5 +16296 chr11 ENSEMBL gene 103849906 103849980 75.0 + 0 ENSG00000264200.1 miRNA MIR4693 3 +16297 chr11 HAVANA gene 103675994 103895271 562.0 - 0 ENSG00000254987.1 lincRNA AP002989.1 1 OTTHUMG00000165952.1 +16298 chr11 HAVANA gene 103945548 103946546 547.0 + 0 ENSG00000255548.1 antisense AP003043.1 2 OTTHUMG00000165989.1 +16299 chr11 HAVANA gene 104036580 104039188 2609.0 + 0 ENSG00000170967.4 protein_coding DDI1 2 OTTHUMG00000165990.1 retrogene +16300 chr11 HAVANA gene 103907186 104164379 4266.0 - 0 ENSG00000170962.12 protein_coding PDGFD 2 OTTHUMG00000165953.3 +16301 chr11 ENSEMBL gene 104252591 104252651 61.0 + 0 ENSG00000280773.2 miRNA MIR7641-1 3 +16302 chr11 HAVANA gene 104445868 104609321 1289.0 - 0 ENSG00000256422.5 lincRNA LINC02552 2 OTTHUMG00000165998.1 +16303 chr11 HAVANA gene 104682383 104682581 199.0 - 0 ENSG00000270449.1 processed_pseudogene AP001485.1 1 OTTHUMG00000184795.1 pseudo_consens +16304 chr11 HAVANA gene 104873264 104873417 154.0 + 0 ENSG00000254569.1 unprocessed_pseudogene AP002004.1 2 OTTHUMG00000165999.1 +16305 chr11 HAVANA gene 104885718 104898670 1786.0 - 0 ENSG00000204403.9 polymorphic_pseudogene CASP12 1 OTTHUMG00000154965.5 +16306 chr11 HAVANA gene 104901549 104919073 4307.0 - 0 ENSG00000235505.7 transcribed_unprocessed_pseudogene CASP17P 2 OTTHUMG00000166076.2 +16307 chr11 HAVANA gene 104942866 104969436 7256.0 - 0 ENSG00000196954.13 protein_coding CASP4 1 OTTHUMG00000166078.3 +16308 chr11 HAVANA gene 104975356 104976116 338.0 - 0 ENSG00000284715.1 unprocessed_pseudogene AP001153.1 2 OTTHUMG00000192343.1 +16309 chr11 HAVANA gene 104994235 105023168 1592.0 - 0 ENSG00000137757.10 protein_coding CASP5 2 OTTHUMG00000048073.6 +16310 chr11 HAVANA gene 105025443 105035250 3698.0 - 0 ENSG00000137752.23 protein_coding CASP1 1 OTTHUMG00000048072.3 +16311 chr11 HAVANA gene 105063345 105071541 1258.0 - 0 ENSG00000254750.1 unprocessed_pseudogene CASP1P2 2 OTTHUMG00000166162.1 overlapping_locus +16312 chr11 HAVANA gene 105092469 105101431 1232.0 - 0 ENSG00000255221.3 protein_coding CARD17 2 OTTHUMG00000166163.3 overlapping_locus +16313 chr11 HAVANA gene 105041326 105101431 1688.0 - 0 ENSG00000204397.7 protein_coding CARD16 2 OTTHUMG00000166157.2 overlapping_locus +16314 chr11 HAVANA gene 105122661 105123339 212.0 - 0 ENSG00000255430.1 unprocessed_pseudogene CASP1P1 2 OTTHUMG00000166164.1 +16315 chr11 HAVANA gene 105194440 105194946 507.0 - 0 ENSG00000254767.1 unprocessed_pseudogene OR2AL1P 2 OTTHUMG00000166222.1 +16316 chr11 HAVANA gene 105246880 105247060 181.0 - 0 ENSG00000255336.1 unprocessed_pseudogene AP003181.1 2 OTTHUMG00000166223.1 +16317 chr11 ENSEMBL gene 105352670 105352956 287.0 - 0 ENSG00000278640.1 misc_RNA RF00017 3 +16318 chr11 HAVANA gene 105137721 105531697 2230.0 - 0 ENSG00000255501.2 protein_coding CARD18 2 OTTHUMG00000166165.4 ncRNA_host,overlapping_locus +16319 chr11 HAVANA gene 105706299 105707937 1639.0 + 0 ENSG00000255403.1 processed_pseudogene AP000641.1 1 OTTHUMG00000166237.1 pseudo_consens,overlapping_locus +16320 chr11 ENSEMBL gene 105824634 105824770 137.0 + 0 ENSG00000222663.1 snRNA RNU4-55P 3 +16321 chr11 ENSEMBL gene 105974826 105974931 106.0 - 0 ENSG00000252081.1 snRNA RNU6-277P 3 +16322 chr11 HAVANA gene 105609994 105982092 10083.0 + 0 ENSG00000152578.12 protein_coding GRIA4 2 OTTHUMG00000166236.3 ncRNA_host,overlapping_locus +16323 chr11 HAVANA gene 105995185 105999213 3770.0 + 0 ENSG00000285813.1 antisense AP000813.1 2 OTTHUMG00000193274.2 +16324 chr11 HAVANA gene 105995623 106022403 5105.0 - 0 ENSG00000170903.10 protein_coding MSANTD4 1 OTTHUMG00000166240.3 +16325 chr11 HAVANA gene 106051098 106077765 5516.0 - 0 ENSG00000182359.14 protein_coding KBTBD3 1 OTTHUMG00000166251.4 +16326 chr11 HAVANA gene 106075501 106098710 6183.0 + 0 ENSG00000149313.10 protein_coding AASDHPPT 2 OTTHUMG00000166253.2 +16327 chr11 HAVANA gene 106085990 106101975 1247.0 - 0 ENSG00000254433.1 antisense AP001001.1 1 OTTHUMG00000166254.1 +16328 chr11 HAVANA gene 106112459 106132116 409.0 - 0 ENSG00000254580.1 lincRNA AP001001.2 1 OTTHUMG00000166293.1 +16329 chr11 HAVANA gene 106250019 106264905 3268.0 + 0 ENSG00000254811.5 transcribed_unprocessed_pseudogene AP002001.1 1 OTTHUMG00000166294.1 +16330 chr11 HAVANA gene 106310045 106311791 1469.0 + 0 ENSG00000255065.1 processed_pseudogene AP002001.2 1 OTTHUMG00000166295.1 pseudo_consens +16331 chr11 HAVANA gene 106824025 106824954 309.0 + 0 ENSG00000274584.1 unprocessed_pseudogene AP001282.2 2 OTTHUMG00000187783.1 +16332 chr11 HAVANA gene 106826392 106827890 1499.0 - 0 ENSG00000213252.3 processed_pseudogene AP001282.1 1 OTTHUMG00000166298.1 pseudo_consens,overlapping_locus +16333 chr11 HAVANA gene 106674012 107018524 16361.0 - 0 ENSG00000152402.10 protein_coding GUCY1A2 2 OTTHUMG00000166296.2 overlapping_locus +16334 chr11 HAVANA gene 107176286 107177530 1245.0 + 0 ENSG00000255353.1 processed_pseudogene AP003057.1 1 OTTHUMG00000166299.1 pseudo_consens +16335 chr11 HAVANA gene 107312132 107316271 4140.0 - 0 ENSG00000261098.1 lincRNA AP000766.1 2 OTTHUMG00000172986.1 +16336 chr11 HAVANA gene 107403404 107404589 1186.0 - 0 ENSG00000225215.1 processed_pseudogene SMARCE1P1 1 OTTHUMG00000152976.1 pseudo_consens,overlapping_locus +16337 chr11 HAVANA gene 107326345 107457844 3581.0 - 0 ENSG00000152404.15 protein_coding CWF19L2 2 OTTHUMG00000152975.2 overlapping_locus +16338 chr11 HAVANA gene 107502726 107565746 4506.0 - 0 ENSG00000137760.14 protein_coding ALKBH8 2 OTTHUMG00000157008.3 +16339 chr11 HAVANA gene 107585901 107586903 1003.0 - 0 ENSG00000270969.1 processed_pseudogene AP001823.1 1 OTTHUMG00000184788.1 pseudo_consens +16340 chr11 HAVANA gene 107600379 107600868 490.0 - 0 ENSG00000255483.1 processed_pseudogene AP000889.2 1 OTTHUMG00000166362.1 pseudo_consens +16341 chr11 HAVANA gene 107642887 107643871 660.0 - 0 ENSG00000254758.1 unprocessed_pseudogene AP000889.1 1 OTTHUMG00000166363.1 pseudo_consens +16342 chr11 HAVANA gene 107591091 107666779 5856.0 + 0 ENSG00000110675.12 protein_coding ELMOD1 1 OTTHUMG00000166361.1 +16343 chr11 HAVANA gene 107707378 107719693 906.0 - 0 ENSG00000170290.3 protein_coding SLN 2 OTTHUMG00000166364.1 +16344 chr11 HAVANA gene 107736009 107738718 1599.0 - 0 ENSG00000254702.1 processed_pseudogene AP002353.1 1 OTTHUMG00000166365.1 pseudo_consens +16345 chr11 HAVANA gene 107908420 107908764 345.0 + 0 ENSG00000240652.1 processed_pseudogene AP001024.1 2 OTTHUMG00000158451.1 +16346 chr11 HAVANA gene 107790991 107928293 3717.0 - 0 ENSG00000110660.14 protein_coding SLC35F2 2 OTTHUMG00000166366.3 +16347 chr11 HAVANA gene 107928503 107963482 1830.0 + 0 ENSG00000179331.2 protein_coding RAB39A 2 OTTHUMG00000166367.1 +16348 chr11 ENSEMBL gene 108084913 108085014 102.0 + 0 ENSG00000200855.1 misc_RNA RF00019 3 +16349 chr11 HAVANA gene 108008733 108107776 6742.0 + 0 ENSG00000166266.13 protein_coding CUL5 1 OTTHUMG00000166369.3 ncRNA_host +16350 chr11 HAVANA gene 108105074 108121684 964.0 - 0 ENSG00000255467.1 antisense AP002433.1 1 OTTHUMG00000166384.1 +16351 chr11 HAVANA gene 108121516 108147776 5584.0 + 0 ENSG00000075239.13 protein_coding ACAT1 1 OTTHUMG00000166381.2 +16352 chr11 HAVANA gene 108142458 108150381 746.0 - 0 ENSG00000285696.1 antisense AP002433.2 2 OTTHUMG00000192658.1 +16353 chr11 HAVANA gene 108157215 108222642 7534.0 - 0 ENSG00000149308.16 protein_coding NPAT 2 OTTHUMG00000166385.3 +16354 chr11 ENSEMBL gene 108229503 108229604 102.0 - 0 ENSG00000206967.1 misc_RNA RF00019 3 +16355 chr11 HAVANA gene 108222484 108369102 23972.0 + 0 ENSG00000149311.18 protein_coding ATM 1 OTTHUMG00000166480.7 +16356 chr11 HAVANA gene 108308519 108467531 3524.0 - 0 ENSG00000166323.12 protein_coding C11orf65 1 OTTHUMG00000166489.5 +16357 chr11 HAVANA gene 108472105 108498432 4993.0 - 0 ENSG00000178202.12 protein_coding KDELC2 1 OTTHUMG00000166535.1 +16358 chr11 HAVANA gene 108505431 108593738 10843.0 - 0 ENSG00000110723.11 protein_coding EXPH5 1 OTTHUMG00000166536.5 +16359 chr11 HAVANA gene 108690289 108690956 668.0 - 0 ENSG00000240698.1 processed_pseudogene RPS2P39 1 OTTHUMG00000158452.1 pseudo_consens +16360 chr11 HAVANA gene 108727741 108730104 320.0 - 0 ENSG00000254730.1 processed_pseudogene AP002453.1 1 OTTHUMG00000166542.1 pseudo_consens +16361 chr11 HAVANA gene 108822333 108822650 318.0 - 0 ENSG00000255379.1 processed_pseudogene CYCSP29 1 OTTHUMG00000166543.1 pseudo_consens +16362 chr11 HAVANA gene 108665025 108940930 8653.0 + 0 ENSG00000178105.10 protein_coding DDX10 1 OTTHUMG00000166540.3 +16363 chr11 HAVANA gene 108957718 108959797 2080.0 + 0 ENSG00000203334.4 lincRNA AP003027.1 2 OTTHUMG00000186821.1 +16364 chr11 ENSEMBL gene 109005517 109005623 107.0 + 0 ENSG00000201243.1 snRNA RNU6-654P 3 +16365 chr11 HAVANA gene 109002465 109037967 333.0 - 0 ENSG00000255528.1 lincRNA AP003123.1 2 OTTHUMG00000166544.1 +16366 chr11 ENSEMBL gene 109120878 109120986 109.0 - 0 ENSG00000200613.1 rRNA_pseudogene RNA5SP349 3 +16367 chr11 ENSEMBL gene 109263494 109263564 71.0 - 0 ENSG00000264997.1 snoRNA RF00157 3 +16368 chr11 HAVANA gene 109422120 109429114 5884.0 + 0 ENSG00000185742.6 protein_coding C11orf87 2 OTTHUMG00000166559.1 +16369 chr11 HAVANA gene 109486968 109487424 457.0 - 0 ENSG00000254890.1 processed_pseudogene AP003049.1 1 OTTHUMG00000166560.1 pseudo_consens,overlapping_locus +16370 chr11 HAVANA gene 109355085 109583907 1091.0 - 0 ENSG00000255028.5 antisense AP003049.2 1 OTTHUMG00000166558.1 overlapping_locus +16371 chr11 HAVANA gene 109637468 109638128 661.0 - 0 ENSG00000254482.1 processed_pseudogene AP003102.1 1 OTTHUMG00000166561.1 pseudo_consens +16372 chr11 HAVANA gene 109751442 109823847 620.0 - 0 ENSG00000254659.2 lincRNA AP002444.1 1 OTTHUMG00000166562.3 +16373 chr11 HAVANA gene 109907004 109907741 738.0 - 0 ENSG00000254798.1 processed_pseudogene TFAMP2 1 OTTHUMG00000166570.1 pseudo_consens +16374 chr11 HAVANA gene 109982192 109983043 852.0 + 0 ENSG00000224776.3 processed_pseudogene RPSAP50 1 OTTHUMG00000158453.1 pseudo_consens +16375 chr11 HAVANA gene 109985243 109985660 418.0 - 0 ENSG00000270423.1 processed_pseudogene AP001981.1 1 OTTHUMG00000184787.1 pseudo_consens +16376 chr11 HAVANA gene 110049528 110050160 633.0 + 0 ENSG00000255210.1 processed_pseudogene AP001889.1 1 OTTHUMG00000166571.1 pseudo_consens +16377 chr11 HAVANA gene 110093361 110171841 9719.0 + 0 ENSG00000149289.10 protein_coding ZC3H12C 1 OTTHUMG00000166572.1 +16378 chr11 HAVANA gene 109864295 110296722 8528.0 - 0 ENSG00000137710.15 protein_coding RDX 1 OTTHUMG00000166574.8 +16379 chr11 HAVANA gene 110355130 110406400 781.0 + 0 ENSG00000254416.5 lincRNA AP000924.1 2 OTTHUMG00000166588.1 +16380 chr11 HAVANA gene 110429883 110464881 3206.0 + 0 ENSG00000137714.2 protein_coding FDX1 2 OTTHUMG00000166589.1 +16381 chr11 HAVANA gene 110577042 110713189 7125.0 - 0 ENSG00000137727.12 protein_coding ARHGAP20 1 OTTHUMG00000166590.2 +16382 chr11 HAVANA gene 110788026 110788976 951.0 - 0 ENSG00000233497.4 processed_pseudogene HNRNPA1P60 1 OTTHUMG00000166646.1 pseudo_consens +16383 chr11 HAVANA gene 110876994 110877177 184.0 - 0 ENSG00000255149.1 processed_pseudogene AP002963.1 2 OTTHUMG00000166647.1 +16384 chr11 ENSEMBL gene 111040098 111040208 111.0 - 0 ENSG00000200168.1 rRNA_pseudogene RNA5SP350 3 +16385 chr11 HAVANA gene 111089870 111090368 499.0 - 0 ENSG00000271390.1 lincRNA AP003973.2 2 OTTHUMG00000185165.1 +16386 chr11 HAVANA gene 111105547 111105895 349.0 - 0 ENSG00000239354.1 processed_pseudogene RPS17P15 1 OTTHUMG00000158454.1 pseudo_consens +16387 chr11 HAVANA gene 111107060 111107750 691.0 - 0 ENSG00000270202.1 processed_pseudogene AP003973.1 1 OTTHUMG00000184786.1 pseudo_consens +16388 chr11 HAVANA gene 111091932 111179641 1345.0 - 0 ENSG00000271584.2 lincRNA LINC02550 2 OTTHUMG00000185166.2 +16389 chr11 HAVANA gene 111245805 111286401 1264.0 + 0 ENSG00000150750.7 protein_coding C11orf53 2 OTTHUMG00000166656.2 +16390 chr11 HAVANA gene 111290787 111305045 8733.0 - 0 ENSG00000196167.9 antisense COLCA1 2 OTTHUMG00000166658.2 +16391 chr11 HAVANA gene 111298555 111308735 2059.0 + 0 ENSG00000214290.8 protein_coding COLCA2 2 OTTHUMG00000166657.3 +16392 chr11 ENSEMBL gene 111347757 111347824 68.0 + 0 ENSG00000264032.1 miRNA MIR4491 3 +16393 chr11 ENSEMBL gene 111383092 111383219 128.0 + 0 ENSG00000253099.1 snRNA RNU2-60P 3 +16394 chr11 HAVANA gene 111414242 111418186 2587.0 - 0 ENSG00000255428.1 sense_intronic AP002008.3 2 OTTHUMG00000166660.1 overlapping_locus +16395 chr11 HAVANA gene 111352252 111455630 7416.0 - 0 ENSG00000110777.11 protein_coding POU2AF1 1 OTTHUMG00000166659.3 overlapping_locus +16396 chr11 HAVANA gene 111448450 111475397 5327.0 + 0 ENSG00000255093.2 transcribed_unitary_pseudogene AP002008.2 1 OTTHUMG00000166717.2 +16397 chr11 HAVANA gene 111467526 111512354 1801.0 - 0 ENSG00000137707.13 protein_coding BTG4 2 OTTHUMG00000166718.2 +16398 chr11 ENSEMBL gene 111512938 111513021 84.0 + 0 ENSG00000207811.3 miRNA MIR34B 3 +16399 chr11 ENSEMBL gene 111513439 111513515 77.0 + 0 ENSG00000207562.3 miRNA MIR34C 3 +16400 chr11 HAVANA gene 111514043 111526755 1155.0 - 0 ENSG00000254980.1 antisense AP002008.1 2 OTTHUMG00000166719.1 +16401 chr11 HAVANA gene 111514785 111537031 3280.0 + 0 ENSG00000183644.13 protein_coding C11orf88 2 OTTHUMG00000166720.1 +16402 chr11 HAVANA gene 111540280 111561745 3144.0 + 0 ENSG00000204381.11 protein_coding LAYN 2 OTTHUMG00000166721.3 +16403 chr11 HAVANA gene 111670956 111672404 1449.0 - 0 ENSG00000235286.1 processed_pseudogene AP000925.1 1 OTTHUMG00000150647.1 pseudo_consens +16404 chr11 ENSEMBL gene 111683111 111683424 314.0 + 0 ENSG00000223324.1 misc_RNA RN7SKP273 3 +16405 chr11 HAVANA gene 111602391 111730853 9796.0 + 0 ENSG00000170145.4 protein_coding SIK2 1 OTTHUMG00000150644.3 ncRNA_host +16406 chr11 HAVANA gene 111726908 111766427 6720.0 - 0 ENSG00000137713.15 protein_coding PPP2R1B 1 OTTHUMG00000166741.3 +16407 chr11 HAVANA gene 111768668 111778350 885.0 - 0 ENSG00000254990.5 lincRNA AP001781.1 1 OTTHUMG00000166794.1 +16408 chr11 HAVANA gene 111817214 111829212 684.0 - 0 ENSG00000254450.1 sense_intronic ALG9-IT1 2 OTTHUMG00000166796.1 overlapping_locus +16409 chr11 HAVANA gene 111864254 111864460 207.0 + 0 ENSG00000254949.1 processed_pseudogene GNG5P3 1 OTTHUMG00000166883.1 pseudo_consens +16410 chr11 HAVANA gene 111782195 111871581 8013.0 - 0 ENSG00000086848.14 protein_coding ALG9 1 OTTHUMG00000166819.6 overlapping_locus +16411 chr11 HAVANA gene 111786286 111879425 3346.0 - 0 ENSG00000258529.5 protein_coding AP001781.2 2 OTTHUMG00000171433.4 overlapping_locus +16412 chr11 HAVANA gene 111874056 111881243 3551.0 - 0 ENSG00000255561.6 protein_coding FDXACB1 1 OTTHUMG00000166795.2 overlapping_locus +16413 chr11 HAVANA gene 111878935 111885975 3831.0 + 0 ENSG00000137720.7 protein_coding C11orf1 1 OTTHUMG00000166884.2 +16414 chr11 HAVANA gene 111889199 111889474 276.0 - 0 ENSG00000176343.5 processed_pseudogene RPL37AP8 1 OTTHUMG00000158458.1 pseudo_consens +16415 chr11 HAVANA gene 111912242 111914093 1335.0 + 0 ENSG00000170276.5 protein_coding HSPB2 2 OTTHUMG00000166886.1 overlapping_locus +16416 chr11 HAVANA gene 111908565 111923722 3034.0 - 0 ENSG00000109846.7 protein_coding CRYAB 1 OTTHUMG00000166885.3 +16417 chr11 HAVANA gene 111912736 111926871 2058.0 + 0 ENSG00000254445.1 protein_coding HSPB2-C11orf52 2 OTTHUMG00000166887.1 overlapping_locus +16418 chr11 HAVANA gene 111918032 111926872 1800.0 + 0 ENSG00000149300.9 protein_coding C11orf52 2 OTTHUMG00000166888.2 overlapping_locus +16419 chr11 ENSEMBL gene 111928400 111928508 109.0 + 0 ENSG00000238965.1 rRNA_pseudogene RNA5SP351 3 +16420 chr11 HAVANA gene 111945639 111946892 353.0 - 0 ENSG00000255286.2 processed_pseudogene AP000907.1 1 OTTHUMG00000166922.2 pseudo_consens +16421 chr11 HAVANA gene 112015307 112016124 322.0 + 0 ENSG00000255334.1 sense_intronic AP000907.2 2 OTTHUMG00000166913.1 overlapping_locus +16422 chr11 HAVANA gene 111927144 112022584 8509.0 + 0 ENSG00000150764.13 protein_coding DIXDC1 2 OTTHUMG00000166912.3 overlapping_locus +16423 chr11 HAVANA gene 112029858 112030367 510.0 - 0 ENSG00000230911.1 processed_pseudogene PPIHP1 1 OTTHUMG00000133754.1 pseudo_consens +16424 chr11 ENSEMBL gene 112032499 112032598 100.0 - 0 ENSG00000238444.1 snRNA RNU6-893P 3 +16425 chr11 HAVANA gene 112036627 112036863 237.0 - 0 ENSG00000271025.1 processed_pseudogene AP000907.3 1 OTTHUMG00000184785.1 pseudo_consens +16426 chr11 HAVANA gene 112024814 112064390 4831.0 + 0 ENSG00000150768.15 protein_coding DLAT 1 OTTHUMG00000133751.2 +16427 chr11 HAVANA gene 112064010 112074274 2474.0 - 0 ENSG00000150773.10 protein_coding PIH1D2 2 OTTHUMG00000166925.4 +16428 chr11 HAVANA gene 112074086 112085150 5755.0 + 0 ENSG00000150776.17 protein_coding NKAPD1 1 OTTHUMG00000150213.5 +16429 chr11 HAVANA gene 112084800 112086798 1166.0 - 0 ENSG00000150779.11 protein_coding TIMM8B 2 OTTHUMG00000162261.2 +16430 chr11 HAVANA gene 112086773 112120013 2838.0 + 0 ENSG00000204370.10 protein_coding SDHD 1 OTTHUMG00000166997.3 overlapping_locus +16431 chr11 HAVANA gene 112143251 112164117 2628.0 - 0 ENSG00000150782.11 protein_coding IL18 1 OTTHUMG00000167006.2 +16432 chr11 HAVANA gene 112167372 112172559 1155.0 + 0 ENSG00000150783.9 protein_coding TEX12 2 OTTHUMG00000167008.1 overlapping_locus +16433 chr11 HAVANA gene 112165197 112172606 594.0 - 0 ENSG00000254638.1 antisense AP002884.2 1 OTTHUMG00000167007.1 +16434 chr11 HAVANA gene 112180773 112183191 1166.0 + 0 ENSG00000214264.4 processed_pseudogene KCTD9P4 1 OTTHUMG00000167156.1 pseudo_consens,overlapping_locus +16435 chr11 HAVANA gene 112086903 112193805 1190.0 + 0 ENSG00000255292.8 protein_coding AP002884.3 1 OTTHUMG00000186325.1 overlapping_locus +16436 chr11 HAVANA gene 112208601 112208898 298.0 + 0 ENSG00000255231.1 processed_pseudogene MRPS36P4 1 OTTHUMG00000167157.2 pseudo_consens,overlapping_locus +16437 chr11 HAVANA gene 112218326 112218720 395.0 + 0 ENSG00000243930.1 processed_pseudogene RPS12P21 2 OTTHUMG00000167158.1 overlapping_locus +16438 chr11 HAVANA gene 112175467 112224699 6789.0 + 0 ENSG00000197580.11 protein_coding BCO2 1 OTTHUMG00000167155.4 overlapping_locus +16439 chr11 HAVANA gene 112235371 112236025 655.0 - 0 ENSG00000243250.1 processed_pseudogene RPS6P16 2 OTTHUMG00000158460.1 +16440 chr11 HAVANA gene 112248479 112260860 1215.0 - 0 ENSG00000188771.4 protein_coding PLET1 2 OTTHUMG00000167189.2 +16441 chr11 HAVANA gene 112260265 112261396 1132.0 + 0 ENSG00000268472.2 antisense AP002884.4 2 OTTHUMG00000187435.1 overlapping_locus +16442 chr11 HAVANA gene 112267290 112268371 1082.0 - 0 ENSG00000213234.4 processed_pseudogene ST13P10 1 OTTHUMG00000167190.1 pseudo_consens +16443 chr11 HAVANA gene 112226365 112269955 3130.0 + 0 ENSG00000150787.7 protein_coding PTS 2 OTTHUMG00000167167.1 overlapping_locus +16444 chr11 ENSEMBL gene 112352556 112352662 107.0 - 0 ENSG00000206772.1 snRNA RNU6-44P 3 +16445 chr11 HAVANA gene 112270749 112362534 5018.0 + 0 ENSG00000250303.3 lincRNA AP002884.1 1 OTTHUMG00000167191.2 +16446 chr11 HAVANA gene 112461468 112461920 453.0 - 0 ENSG00000213233.5 processed_pseudogene RPL23AP62 1 OTTHUMG00000158461.2 pseudo_consens +16447 chr11 HAVANA gene 112534220 112555802 2067.0 - 0 ENSG00000255484.2 lincRNA AP003063.2 1 OTTHUMG00000167193.2 +16448 chr11 ENSEMBL gene 112602354 112602452 99.0 - 0 ENSG00000212397.1 snoRNA RF00477 3 +16449 chr11 HAVANA gene 112393118 112621729 1583.0 + 0 ENSG00000254968.6 lincRNA AP003063.1 1 OTTHUMG00000167195.1 +16450 chr11 HAVANA gene 112637342 112751131 1654.0 + 0 ENSG00000285769.1 lincRNA AP003100.2 2 OTTHUMG00000192968.1 +16451 chr11 HAVANA gene 112787304 112795854 832.0 + 0 ENSG00000254626.1 lincRNA AP003100.1 2 OTTHUMG00000167194.1 +16452 chr11 HAVANA gene 112959279 112963460 1975.0 - 0 ENSG00000247416.3 antisense AP000802.1 1 OTTHUMG00000167662.2 +16453 chr11 ENSEMBL gene 112977353 112977420 68.0 + 0 ENSG00000238998.1 snRNA RNU7-187P 3 +16454 chr11 HAVANA gene 113269532 113273901 1198.0 - 0 ENSG00000227487.3 antisense NCAM1-AS1 1 OTTHUMG00000167663.1 +16455 chr11 HAVANA gene 112961247 113278436 12737.0 + 0 ENSG00000149294.16 protein_coding NCAM1 1 OTTHUMG00000167196.8 ncRNA_host +16456 chr11 HAVANA gene 113278437 113314437 958.0 - 0 ENSG00000255129.5 antisense AP000880.1 1 OTTHUMG00000167679.1 +16457 chr11 HAVANA gene 113368478 113369117 640.0 + 0 ENSG00000270179.1 sense_intronic AP002840.2 2 OTTHUMG00000184126.1 overlapping_locus +16458 chr11 HAVANA gene 113314529 113383544 5302.0 + 0 ENSG00000149292.16 protein_coding TTC12 2 OTTHUMG00000142832.7 overlapping_locus +16459 chr11 HAVANA gene 113387791 113400418 2598.0 + 0 ENSG00000170209.4 protein_coding ANKK1 2 OTTHUMG00000167715.1 +16460 chr11 HAVANA gene 113405321 113412117 524.0 + 0 ENSG00000256757.1 antisense AP002840.1 1 OTTHUMG00000167716.1 +16461 chr11 ENSEMBL gene 113450023 113450088 66.0 - 0 ENSG00000265140.1 miRNA MIR4301 3 +16462 chr11 HAVANA gene 113409615 113475691 4098.0 - 0 ENSG00000149295.13 protein_coding DRD2 2 OTTHUMG00000167717.2 ncRNA_host +16463 chr11 HAVANA gene 113687546 113706373 2666.0 - 0 ENSG00000166682.11 protein_coding TMPRSS5 1 OTTHUMG00000168186.3 +16464 chr11 HAVANA gene 113711720 113712398 679.0 + 0 ENSG00000256091.1 processed_pseudogene MTRF1LP1 1 OTTHUMG00000168189.1 pseudo_consens +16465 chr11 HAVANA gene 113751116 113751286 171.0 - 0 ENSG00000243353.1 processed_pseudogene RPS29P19 1 OTTHUMG00000158462.1 pseudo_consens,overlapping_locus +16466 chr11 HAVANA gene 113769660 113769994 335.0 + 0 ENSG00000257070.1 processed_pseudogene AP003170.5 1 OTTHUMG00000168191.1 pseudo_consens +16467 chr11 HAVANA gene 113770393 113771691 586.0 - 0 ENSG00000256603.1 antisense AP003170.4 2 OTTHUMG00000168192.1 overlapping_locus +16468 chr11 HAVANA gene 113733187 113773811 2992.0 - 0 ENSG00000086827.8 protein_coding ZW10 2 OTTHUMG00000168190.1 overlapping_locus +16469 chr11 HAVANA gene 113779747 113780500 754.0 + 0 ENSG00000228607.2 protein_coding CLDN25 2 OTTHUMG00000168193.1 +16470 chr11 HAVANA gene 113789242 113790027 786.0 + 0 ENSG00000255870.1 processed_pseudogene AP003170.2 1 OTTHUMG00000168195.1 pseudo_consens,overlapping_locus +16471 chr11 HAVANA gene 113789231 113791366 2136.0 + 0 ENSG00000256167.1 transcribed_processed_pseudogene ATF4P4 1 OTTHUMG00000168194.1 pseudo_consens,overlapping_locus +16472 chr11 HAVANA gene 113791466 113791752 287.0 + 0 ENSG00000257101.1 processed_pseudogene LRRC37A13P 2 OTTHUMG00000168196.1 +16473 chr11 HAVANA gene 113820856 113821885 1030.0 - 0 ENSG00000255710.2 processed_pseudogene AP003170.1 1 OTTHUMG00000168207.2 pseudo_consens,overlapping_locus +16474 chr11 HAVANA gene 113818077 113822458 158.0 + 0 ENSG00000256452.1 antisense AP003170.3 2 OTTHUMG00000168206.1 +16475 chr11 ENSEMBL gene 113859346 113859449 104.0 + 0 ENSG00000201687.1 snRNA RNU6-1107P 3 +16476 chr11 HAVANA gene 113797874 113875570 5719.0 - 0 ENSG00000048028.11 protein_coding USP28 1 OTTHUMG00000168205.3 overlapping_locus +16477 chr11 HAVANA gene 113904677 113946565 2314.0 + 0 ENSG00000149305.6 protein_coding HTR3B 1 OTTHUMG00000168210.1 +16478 chr11 HAVANA gene 113974881 113990313 2772.0 + 0 ENSG00000166736.11 protein_coding HTR3A 2 OTTHUMG00000160494.2 +16479 chr11 HAVANA gene 114059593 114250676 6372.0 + 0 ENSG00000109906.13 protein_coding ZBTB16 2 OTTHUMG00000168243.3 +16480 chr11 HAVANA gene 114257787 114313285 2919.0 + 0 ENSG00000166741.7 protein_coding NNMT 2 OTTHUMG00000168245.1 +16481 chr11 HAVANA gene 114210616 114356571 393.0 - 0 ENSG00000256947.1 antisense AP002518.2 2 OTTHUMG00000168244.1 +16482 chr11 HAVANA gene 114360635 114380045 3837.0 - 0 ENSG00000256195.2 antisense AP002518.1 2 OTTHUMG00000168246.2 +16483 chr11 HAVANA gene 114391443 114400511 2203.0 - 0 ENSG00000180425.11 protein_coding C11orf71 2 OTTHUMG00000168247.3 +16484 chr11 HAVANA gene 114400030 114414203 7885.0 + 0 ENSG00000076053.10 protein_coding RBM7 2 OTTHUMG00000168270.1 overlapping_locus +16485 chr11 HAVANA gene 114400682 114443932 729.0 + 0 ENSG00000255663.1 protein_coding AP002373.1 2 OTTHUMG00000168263.2 overlapping_locus +16486 chr11 HAVANA gene 114439386 114450279 3699.0 + 0 ENSG00000076043.9 protein_coding REXO2 1 OTTHUMG00000168271.2 overlapping_locus +16487 chr11 HAVANA gene 114453064 114454123 1060.0 + 0 ENSG00000256533.1 processed_pseudogene AP002373.2 2 OTTHUMG00000168272.1 +16488 chr11 HAVANA gene 114512706 114513431 726.0 - 0 ENSG00000255982.1 processed_pseudogene NXPE2P1 2 OTTHUMG00000168290.1 +16489 chr11 HAVANA gene 114517864 114518371 508.0 + 0 ENSG00000270204.1 processed_pseudogene AC020549.2 1 OTTHUMG00000184748.1 pseudo_consens +16490 chr11 ENSEMBL gene 114527129 114527232 104.0 + 0 ENSG00000238724.1 snoRNA RF01210 3 +16491 chr11 HAVANA gene 114521645 114559895 4387.0 - 0 ENSG00000095110.8 protein_coding NXPE1 2 OTTHUMG00000168284.3 +16492 chr11 HAVANA gene 114583253 114584692 1440.0 + 0 ENSG00000256674.1 processed_pseudogene AC020549.1 1 OTTHUMG00000168292.1 pseudo_consens +16493 chr11 HAVANA gene 114570591 114595762 2163.0 - 0 ENSG00000137634.9 protein_coding NXPE4 2 OTTHUMG00000168291.1 +16494 chr11 HAVANA gene 114678386 114706933 1873.0 + 0 ENSG00000204361.8 protein_coding NXPE2 2 OTTHUMG00000168293.4 +16495 chr11 ENSEMBL gene 115128218 115128373 156.0 - 0 ENSG00000252870.1 snoRNA RF01293 3 +16496 chr11 HAVANA gene 115333577 115340262 330.0 + 0 ENSG00000256972.1 lincRNA AP000462.3 2 OTTHUMG00000168234.1 +16497 chr11 HAVANA gene 115363629 115377931 818.0 + 0 ENSG00000255580.1 lincRNA AP000462.1 2 OTTHUMG00000168235.1 +16498 chr11 HAVANA gene 115396756 115397658 903.0 + 0 ENSG00000256315.1 processed_transcript AP000462.2 2 OTTHUMG00000168236.1 +16499 chr11 HAVANA gene 115169218 115504957 11017.0 - 0 ENSG00000182985.17 protein_coding CADM1 1 OTTHUMG00000168202.7 +16500 chr11 HAVANA gene 115532322 115532953 294.0 - 0 ENSG00000256281.1 lincRNA AP003174.2 2 OTTHUMG00000168237.1 +16501 chr11 HAVANA gene 115538869 115539384 516.0 - 0 ENSG00000257087.1 processed_pseudogene AP003174.3 1 OTTHUMG00000168238.1 pseudo_consens +16502 chr11 HAVANA gene 115578049 115578243 195.0 + 0 ENSG00000255903.2 processed_pseudogene RPL12P46 1 OTTHUMG00000168239.2 pseudo_consens +16503 chr11 HAVANA gene 115582297 115600339 376.0 + 0 ENSG00000255689.1 lincRNA AP003174.1 2 OTTHUMG00000168240.1 +16504 chr11 ENSEMBL gene 115627082 115627185 104.0 - 0 ENSG00000239153.1 snoRNA RF01210 3 +16505 chr11 HAVANA gene 115628065 115629743 479.0 + 0 ENSG00000255599.1 lincRNA AP000997.1 2 OTTHUMG00000168211.1 +16506 chr11 HAVANA gene 115638563 115646962 8400.0 + 0 ENSG00000260254.1 lincRNA AP000997.2 2 OTTHUMG00000168212.2 +16507 chr11 HAVANA gene 115659168 115661417 2250.0 + 0 ENSG00000279771.1 TEC AP000997.3 2 OTTHUMG00000168213.2 overlapping_locus +16508 chr11 HAVANA gene 115731942 115734742 2801.0 - 0 ENSG00000279818.1 TEC AP002991.2 2 OTTHUMG00000168215.1 +16509 chr11 HAVANA gene 115754248 115760627 4766.0 - 0 ENSG00000246100.3 lincRNA LINC00900 2 OTTHUMG00000168216.2 +16510 chr11 HAVANA gene 115659658 115843146 574.0 + 0 ENSG00000256717.1 lincRNA AP002991.1 2 OTTHUMG00000168214.1 overlapping_locus +16511 chr11 HAVANA gene 115932774 115942995 641.0 + 0 ENSG00000257067.5 lincRNA AP000797.3 2 OTTHUMG00000168217.1 +16512 chr11 HAVANA gene 115950196 115950801 606.0 - 0 ENSG00000244259.1 processed_pseudogene AP000797.2 1 OTTHUMG00000158463.1 pseudo_consens +16513 chr11 HAVANA gene 115951105 115951491 387.0 - 0 ENSG00000239600.1 processed_pseudogene AP000797.1 1 OTTHUMG00000158464.1 pseudo_consens +16514 chr11 HAVANA gene 116496899 116500630 921.0 - 0 ENSG00000236437.1 lincRNA LINC02151 2 OTTHUMG00000045137.1 +16515 chr11 HAVANA gene 116609995 116610094 100.0 - 0 ENSG00000278945.1 TEC AP000770.2 2 OTTHUMG00000173229.1 +16516 chr11 HAVANA gene 116639422 116658252 738.0 + 0 ENSG00000237937.5 lincRNA AP000770.1 2 OTTHUMG00000045138.1 +16517 chr11 HAVANA gene 116748170 116772988 2196.0 - 0 ENSG00000137656.11 protein_coding BUD13 1 OTTHUMG00000045136.5 +16518 chr11 HAVANA gene 116773389 116774205 419.0 + 0 ENSG00000226645.1 antisense AP006216.1 1 OTTHUMG00000150017.1 +16519 chr11 HAVANA gene 116773799 116788050 7069.0 - 0 ENSG00000109917.10 protein_coding ZPR1 2 OTTHUMG00000046114.9 overlapping_locus +16520 chr11 HAVANA gene 116789367 116792420 1938.0 - 0 ENSG00000110243.11 protein_coding APOA5 2 OTTHUMG00000046116.4 +16521 chr11 HAVANA gene 116813204 116814003 333.0 - 0 ENSG00000236267.1 antisense AP006216.2 1 OTTHUMG00000046113.2 +16522 chr11 HAVANA gene 116820645 116821541 690.0 + 0 ENSG00000285513.1 antisense AP006216.3 2 OTTHUMG00000192532.1 +16523 chr11 HAVANA gene 116820700 116823306 1473.0 - 0 ENSG00000110244.6 protein_coding APOA4 2 OTTHUMG00000046110.3 +16524 chr11 HAVANA gene 116829706 116833072 866.0 + 0 ENSG00000110245.11 protein_coding APOC3 2 OTTHUMG00000046115.7 +16525 chr11 HAVANA gene 116835751 116837950 1424.0 - 0 ENSG00000118137.9 protein_coding APOA1 1 OTTHUMG00000046112.5 +16526 chr11 HAVANA gene 116836117 116855729 563.0 + 0 ENSG00000235910.1 antisense APOA1-AS 2 OTTHUMG00000150649.1 +16527 chr11 ENSEMBL gene 117015897 117015992 96.0 + 0 ENSG00000200537.1 misc_RNA RNY4P6 3 +16528 chr11 HAVANA gene 117035797 117036051 255.0 - 0 ENSG00000234268.1 processed_pseudogene AP000936.3 2 OTTHUMG00000045135.1 overlapping_locus +16529 chr11 HAVANA gene 116843402 117098437 10920.0 - 0 ENSG00000160584.15 protein_coding SIK3 1 OTTHUMG00000066628.11 +16530 chr11 HAVANA gene 117098987 117108170 483.0 + 0 ENSG00000224077.1 antisense AP000936.1 1 OTTHUMG00000066694.1 +16531 chr11 HAVANA gene 117117794 117119181 681.0 - 0 ENSG00000225236.1 processed_pseudogene AP000936.2 1 OTTHUMG00000066693.1 pseudo_consens +16532 chr11 HAVANA gene 117135528 117138582 822.0 + 0 ENSG00000254851.1 unprocessed_pseudogene AP005018.2 2 OTTHUMG00000165639.3 +16533 chr11 HAVANA gene 117143891 117144191 301.0 - 0 ENSG00000254678.1 processed_pseudogene AP005018.1 2 OTTHUMG00000167083.1 +16534 chr11 HAVANA gene 117144267 117176894 7104.0 + 0 ENSG00000168092.13 protein_coding PAFAH1B2 1 OTTHUMG00000167064.3 +16535 chr11 HAVANA gene 117178733 117197445 9061.0 + 0 ENSG00000149577.15 protein_coding SIDT2 1 OTTHUMG00000167065.3 +16536 chr11 HAVANA gene 117199321 117204782 3917.0 + 0 ENSG00000149591.16 protein_coding TAGLN 2 OTTHUMG00000167067.2 +16537 chr11 HAVANA gene 117204967 117210292 5326.0 + 0 ENSG00000280143.1 TEC AP000892.3 2 OTTHUMG00000167068.1 +16538 chr11 HAVANA gene 117204337 117232525 22303.0 - 0 ENSG00000160613.12 protein_coding PCSK7 2 OTTHUMG00000165640.6 +16539 chr11 ENSEMBL gene 117263799 117263952 154.0 + 0 ENSG00000252992.1 scaRNA RF00564 3 +16540 chr11 HAVANA gene 117232625 117286445 4398.0 + 0 ENSG00000167257.10 protein_coding RNF214 2 OTTHUMG00000167069.3 ncRNA_host +16541 chr11 HAVANA gene 117288453 117293571 4680.0 + 0 ENSG00000278768.2 processed_transcript BACE1-AS 2 OTTHUMG00000188154.2 +16542 chr11 HAVANA gene 117297005 117297328 324.0 - 0 ENSG00000276505.1 sense_intronic AP000892.2 2 OTTHUMG00000188155.1 +16543 chr11 HAVANA gene 117285207 117316259 7190.0 - 0 ENSG00000186318.16 protein_coding BACE1 2 OTTHUMG00000160636.11 +16544 chr11 HAVANA gene 117316362 117328038 488.0 - 0 ENSG00000250699.1 antisense AP000892.1 1 OTTHUMG00000160666.4 +16545 chr11 HAVANA gene 117336256 117336631 376.0 - 0 ENSG00000271412.1 processed_pseudogene PRR13P3 1 OTTHUMG00000184783.1 pseudo_consens +16546 chr11 HAVANA gene 117314557 117413268 12898.0 + 0 ENSG00000110274.15 protein_coding CEP164 1 OTTHUMG00000167070.5 +16547 chr11 HAVANA gene 117611101 117612017 917.0 - 0 ENSG00000279586.1 TEC AP000711.1 2 OTTHUMG00000167080.1 overlapping_locus +16548 chr11 HAVANA gene 117668483 117668858 376.0 + 0 ENSG00000270403.1 lincRNA AP001554.1 2 OTTHUMG00000185192.1 +16549 chr11 HAVANA gene 117427773 117817525 7035.0 - 0 ENSG00000177103.13 protein_coding DSCAML1 2 OTTHUMG00000167071.3 overlapping_locus +16550 chr11 HAVANA gene 117818443 117821992 557.0 + 0 ENSG00000254844.4 antisense AP000757.2 1 OTTHUMG00000166521.2 +16551 chr11 HAVANA gene 117800844 117828698 5595.0 - 0 ENSG00000137731.13 protein_coding FXYD2 2 OTTHUMG00000166990.2 overlapping_locus +16552 chr11 HAVANA gene 117833719 117838942 1464.0 + 0 ENSG00000254528.7 antisense AP000757.1 2 OTTHUMG00000166522.4 +16553 chr11 HAVANA gene 117820163 117876667 782.0 - 0 ENSG00000255245.4 protein_coding FXYD6-FXYD2 2 OTTHUMG00000166496.4 overlapping_locus +16554 chr11 HAVANA gene 117836976 117877486 5137.0 - 0 ENSG00000137726.16 protein_coding FXYD6 2 OTTHUMG00000166991.4 overlapping_locus +16555 chr11 HAVANA gene 117900643 117929459 5367.0 - 0 ENSG00000137747.15 protein_coding TMPRSS13 1 OTTHUMG00000166992.2 +16556 chr11 HAVANA gene 117986348 118003037 8102.0 + 0 ENSG00000110324.10 protein_coding IL10RA 2 OTTHUMG00000166523.3 +16557 chr11 ENSEMBL gene 118067237 118067539 303.0 + 0 ENSG00000272075.2 misc_RNA RN7SL828P 3 +16558 chr11 HAVANA gene 118003634 118088299 3769.0 - 0 ENSG00000255274.9 protein_coding SMIM35 2 OTTHUMG00000166993.3 +16559 chr11 HAVANA gene 118077012 118121890 9948.0 + 0 ENSG00000137648.17 protein_coding TMPRSS4 1 OTTHUMG00000164122.3 +16560 chr11 HAVANA gene 118133377 118152888 5649.0 - 0 ENSG00000177098.8 protein_coding SCN4B 2 OTTHUMG00000166994.1 +16561 chr11 HAVANA gene 118161951 118176673 5826.0 - 0 ENSG00000149575.5 protein_coding SCN2B 2 OTTHUMG00000048248.2 +16562 chr11 HAVANA gene 118208932 118209211 280.0 - 0 ENSG00000255163.1 processed_pseudogene HSPE1P18 1 OTTHUMG00000166995.1 pseudo_consens,overlapping_locus +16563 chr11 HAVANA gene 118193740 118225094 8587.0 - 0 ENSG00000160593.18 protein_coding JAML 1 OTTHUMG00000166965.4 overlapping_locus +16564 chr11 HAVANA gene 118226690 118252350 3968.0 - 0 ENSG00000160588.9 protein_coding MPZL3 1 OTTHUMG00000166966.2 +16565 chr11 HAVANA gene 118253403 118264536 4753.0 - 0 ENSG00000149573.8 protein_coding MPZL2 2 OTTHUMG00000166967.3 +16566 chr11 HAVANA gene 118264593 118266817 2225.0 + 0 ENSG00000280032.1 TEC AP002800.1 2 OTTHUMG00000173216.1 +16567 chr11 HAVANA gene 118304545 118316175 2844.0 + 0 ENSG00000198851.9 protein_coding CD3E 2 OTTHUMG00000166968.1 +16568 chr11 HAVANA gene 118322789 118323083 295.0 - 0 ENSG00000254992.1 processed_pseudogene AP001582.1 2 OTTHUMG00000166969.1 +16569 chr11 HAVANA gene 118338954 118342744 929.0 - 0 ENSG00000167286.9 protein_coding CD3D 1 OTTHUMG00000166970.1 +16570 chr11 HAVANA gene 118344344 118355161 3836.0 + 0 ENSG00000160654.10 protein_coding CD3G 2 OTTHUMG00000166971.2 +16571 chr11 HAVANA gene 118359585 118399211 6576.0 + 0 ENSG00000110344.9 protein_coding UBE4A 2 OTTHUMG00000168100.1 +16572 chr11 HAVANA gene 118397095 118401895 2395.0 - 0 ENSG00000254873.1 antisense AP001267.1 1 OTTHUMG00000166405.1 +16573 chr11 HAVANA gene 118415977 118416521 545.0 + 0 ENSG00000269944.1 sense_intronic AP001267.4 2 OTTHUMG00000184103.1 overlapping_locus +16574 chr11 HAVANA gene 118401154 118431496 3382.0 + 0 ENSG00000167283.7 protein_coding ATP5MG 1 OTTHUMG00000166336.4 overlapping_locus +16575 chr11 HAVANA gene 118433121 118435206 2086.0 - 0 ENSG00000255384.1 lincRNA AP001267.2 2 OTTHUMG00000166406.1 +16576 chr11 HAVANA gene 118401602 118482737 6447.0 + 0 ENSG00000285827.1 protein_coding AP001267.5 2 OTTHUMG00000192648.1 overlapping_locus +16577 chr11 HAVANA gene 118436464 118526832 31305.0 + 0 ENSG00000118058.21 protein_coding KMT2A 1 OTTHUMG00000166337.11 overlapping_locus +16578 chr11 HAVANA gene 118511911 118531094 1054.0 - 0 ENSG00000255435.6 antisense AP001267.3 2 OTTHUMG00000166407.2 +16579 chr11 HAVANA gene 118527472 118531197 1009.0 + 0 ENSG00000172425.10 protein_coding TTC36 2 OTTHUMG00000166338.2 overlapping_locus +16580 chr11 HAVANA gene 118531041 118547280 5529.0 + 0 ENSG00000149582.15 protein_coding TMEM25 1 OTTHUMG00000166339.3 overlapping_locus +16581 chr11 HAVANA gene 118560690 118561580 891.0 + 0 ENSG00000243431.1 processed_pseudogene RPL5P30 1 OTTHUMG00000158472.1 pseudo_consens +16582 chr11 HAVANA gene 118544528 118572970 3814.0 - 0 ENSG00000118096.7 protein_coding IFT46 2 OTTHUMG00000166408.2 +16583 chr11 ENSEMBL gene 118593988 118594093 106.0 + 0 ENSG00000207185.1 snRNA RNU6-1157P 3 +16584 chr11 HAVANA gene 118572390 118603033 4177.0 + 0 ENSG00000095139.13 protein_coding ARCN1 1 OTTHUMG00000166340.2 ncRNA_host +16585 chr11 HAVANA gene 118636620 118638097 1388.0 + 0 ENSG00000255176.1 antisense AP000941.1 2 OTTHUMG00000166342.1 overlapping_locus +16586 chr11 ENSEMBL gene 118644000 118644079 80.0 + 0 ENSG00000284246.1 miRNA MIR6716 3 +16587 chr11 HAVANA gene 118606440 118658038 21722.0 + 0 ENSG00000019144.18 protein_coding PHLDB1 2 OTTHUMG00000166341.7 ncRNA_host,overlapping_locus +16588 chr11 HAVANA gene 118657316 118679690 3182.0 - 0 ENSG00000118094.11 protein_coding TREH 1 OTTHUMG00000166409.3 +16589 chr11 HAVANA gene 118688033 118690599 511.0 - 0 ENSG00000255239.2 unprocessed_pseudogene TREHP1 2 OTTHUMG00000166410.2 +16590 chr11 ENSEMBL gene 118702342 118702447 106.0 + 0 ENSG00000207462.1 snRNA RNU6-376P 3 +16591 chr11 HAVANA gene 118700427 118750263 966.0 + 0 ENSG00000255422.3 antisense AP002954.1 2 OTTHUMG00000166343.2 ncRNA_host +16592 chr11 HAVANA gene 118747766 118791149 11444.0 - 0 ENSG00000110367.12 protein_coding DDX6 1 OTTHUMG00000166411.5 +16593 chr11 HAVANA gene 118791254 118793137 1884.0 + 0 ENSG00000278376.1 lincRNA AP004609.3 2 OTTHUMG00000188156.1 +16594 chr11 HAVANA gene 118821895 118822084 190.0 + 0 ENSG00000254478.1 processed_pseudogene AP004609.2 1 OTTHUMG00000166344.1 pseudo_consens +16595 chr11 HAVANA gene 118833846 118834556 711.0 - 0 ENSG00000254621.1 processed_pseudogene SETP16 1 OTTHUMG00000166412.1 pseudo_consens +16596 chr11 ENSEMBL gene 118836010 118836111 102.0 + 0 ENSG00000201535.2 misc_RNA RF00019 3 +16597 chr11 HAVANA gene 118885841 118887742 1646.0 - 0 ENSG00000245869.2 antisense AP004609.1 1 OTTHUMG00000166413.1 +16598 chr11 HAVANA gene 118883766 118897799 4431.0 + 0 ENSG00000160683.4 protein_coding CXCR5 2 OTTHUMG00000166345.1 +16599 chr11 ENSEMBL gene 118910708 118910787 80.0 + 0 ENSG00000264211.1 miRNA MIR4492 3 +16600 chr11 HAVANA gene 118893875 118925608 10470.0 - 0 ENSG00000186174.12 protein_coding BCL9L 1 OTTHUMG00000166414.7 +16601 chr11 ENSEMBL gene 118931216 118931490 275.0 + 0 ENSG00000239726.3 misc_RNA RN7SL688P 3 +16602 chr11 HAVANA gene 118925164 118958559 1106.0 + 0 ENSG00000110375.2 protein_coding UPK2 2 OTTHUMG00000166346.1 ncRNA_host +16603 chr11 ENSEMBL gene 118970498 118970595 98.0 + 0 ENSG00000222529.1 misc_RNA RF00019 3 +16604 chr11 HAVANA gene 118971707 118981291 1237.0 + 0 ENSG00000176302.12 protein_coding FOXR1 1 OTTHUMG00000166347.2 +16605 chr11 ENSEMBL gene 118994334 118994630 297.0 + 0 ENSG00000280502.1 misc_RNA RF00017 3 +16606 chr11 ENSEMBL gene 118994560 118994655 96.0 + 0 ENSG00000283691.1 misc_RNA RF00019 3 +16607 chr11 HAVANA gene 118994824 118998004 1506.0 - 0 ENSG00000255121.2 lincRNA AP003392.4 1 OTTHUMG00000166415.2 +16608 chr11 HAVANA gene 119003012 119003446 435.0 - 0 ENSG00000240970.1 processed_pseudogene RPL23AP64 1 OTTHUMG00000158473.1 pseudo_consens +16609 chr11 HAVANA gene 119003742 119004893 523.0 - 0 ENSG00000254428.1 antisense AP003392.1 2 OTTHUMG00000166416.1 +16610 chr11 HAVANA gene 119005727 119005934 208.0 - 0 ENSG00000254909.1 processed_pseudogene AP003392.2 2 OTTHUMG00000166349.1 +16611 chr11 HAVANA gene 118998142 119015791 5105.0 + 0 ENSG00000186166.8 protein_coding CCDC84 2 OTTHUMG00000166348.3 +16612 chr11 HAVANA gene 119015712 119018691 1477.0 - 0 ENSG00000118181.10 protein_coding RPS25 2 OTTHUMG00000166350.1 +16613 chr11 ENSEMBL gene 119018944 119019012 69.0 + 0 ENSG00000283704.1 miRNA MIR3656 3 +16614 chr11 HAVANA gene 119018432 119025454 5140.0 + 0 ENSG00000196655.11 protein_coding TRAPPC4 1 OTTHUMG00000166351.1 ncRNA_host +16615 chr11 HAVANA gene 119024114 119030906 6186.0 - 0 ENSG00000137700.18 protein_coding SLC37A4 2 OTTHUMG00000166352.5 reference_genome_error +16616 chr11 HAVANA gene 119044188 119045493 667.0 + 0 ENSG00000255114.1 antisense AP003392.3 2 OTTHUMG00000166353.1 +16617 chr11 HAVANA gene 119044189 119057202 7694.0 - 0 ENSG00000149428.18 protein_coding HYOU1 1 OTTHUMG00000166354.9 +16618 chr11 HAVANA gene 119065263 119065677 415.0 - 0 ENSG00000271751.1 lincRNA AP003392.5 2 OTTHUMG00000185714.1 +16619 chr11 HAVANA gene 119067374 119067698 325.0 - 0 ENSG00000272186.1 antisense AP003392.6 2 OTTHUMG00000185715.1 +16620 chr11 HAVANA gene 119067692 119081978 5907.0 + 0 ENSG00000160695.14 protein_coding VPS11 2 OTTHUMG00000166355.6 +16621 chr11 HAVANA gene 119084866 119093549 4247.0 + 0 ENSG00000256269.8 protein_coding HMBS 2 OTTHUMG00000168295.12 +16622 chr11 HAVANA gene 119093854 119095467 1614.0 - 0 ENSG00000188486.3 protein_coding H2AFX 2 OTTHUMG00000166196.4 retrogene +16623 chr11 HAVANA gene 119096503 119108331 5280.0 - 0 ENSG00000172269.18 protein_coding DPAGT1 2 OTTHUMG00000153533.4 +16624 chr11 HAVANA gene 119102198 119118544 9216.0 + 0 ENSG00000172375.13 protein_coding C2CD2L 1 OTTHUMG00000166167.4 +16625 chr11 HAVANA gene 119121587 119136044 9836.0 + 0 ENSG00000172273.12 protein_coding HINFP 1 OTTHUMG00000166168.4 +16626 chr11 HAVANA gene 119149012 119162653 6271.0 + 0 ENSG00000172350.9 protein_coding ABCG4 1 OTTHUMG00000166169.6 +16627 chr11 HAVANA gene 119166568 119184016 5320.0 + 0 ENSG00000160703.15 protein_coding NLRX1 2 OTTHUMG00000154476.5 +16628 chr11 HAVANA gene 119185457 119190223 3827.0 + 0 ENSG00000172367.15 protein_coding PDZD3 1 OTTHUMG00000166224.1 +16629 chr11 HAVANA gene 119189638 119196769 2556.0 - 0 ENSG00000248712.7 protein_coding CCDC153 2 OTTHUMG00000156903.3 +16630 chr11 ENSEMBL gene 119289562 119289677 116.0 - 0 ENSG00000222249.1 snRNA RNU6-262P 3 +16631 chr11 ENSEMBL gene 119312950 119313012 63.0 - 0 ENSG00000284148.1 miRNA MIR6756 3 +16632 chr11 HAVANA gene 119206276 119313926 11740.0 + 0 ENSG00000110395.6 protein_coding CBL 2 OTTHUMG00000166170.6 +16633 chr11 HAVANA gene 119308529 119321521 7422.0 - 0 ENSG00000076706.16 protein_coding MCAM 2 OTTHUMG00000166197.6 ncRNA_host +16634 chr11 ENSEMBL gene 119323293 119323409 117.0 - 0 ENSG00000252119.1 snoRNA RF01225 3 +16635 chr11 HAVANA gene 119336249 119337309 507.0 - 0 ENSG00000245385.2 antisense AP003396.1 1 OTTHUMG00000166225.1 +16636 chr11 HAVANA gene 119334527 119337313 2787.0 + 0 ENSG00000173456.4 protein_coding RNF26 2 OTTHUMG00000166171.1 +16637 chr11 HAVANA gene 119338939 119340940 1540.0 - 0 ENSG00000223953.5 protein_coding C1QTNF5 2 OTTHUMG00000166198.3 overlapping_locus +16638 chr11 HAVANA gene 119338942 119346673 4064.0 - 0 ENSG00000235718.8 protein_coding MFRP 2 OTTHUMG00000166199.5 overlapping_locus +16639 chr11 HAVANA gene 119372706 119381613 894.0 + 0 ENSG00000254740.2 antisense AP003396.3 1 OTTHUMG00000166172.2 +16640 chr11 HAVANA gene 119355215 119381726 4538.0 - 0 ENSG00000036672.15 protein_coding USP2 1 OTTHUMG00000166200.2 +16641 chr11 HAVANA gene 119402792 119404088 1297.0 + 0 ENSG00000254590.1 processed_pseudogene AP003396.2 1 OTTHUMG00000166174.1 pseudo_consens,overlapping_locus +16642 chr11 HAVANA gene 119403963 119404227 265.0 - 0 ENSG00000254892.1 processed_pseudogene AP003396.4 2 OTTHUMG00000166201.1 +16643 chr11 HAVANA gene 119417951 119419114 632.0 + 0 ENSG00000263873.1 sense_intronic AP003396.5 2 OTTHUMG00000179599.1 overlapping_locus +16644 chr11 HAVANA gene 119417378 119424985 5925.0 - 0 ENSG00000154096.13 protein_coding THY1 1 OTTHUMG00000166202.4 +16645 chr11 HAVANA gene 119444991 119445519 529.0 - 0 ENSG00000255377.1 processed_pseudogene DUXAP5 1 OTTHUMG00000166203.1 pseudo_consens +16646 chr11 HAVANA gene 119381778 119526664 4762.0 + 0 ENSG00000245248.7 antisense USP2-AS1 1 OTTHUMG00000166173.3 overlapping_locus +16647 chr11 HAVANA gene 119602875 119604306 1432.0 - 0 ENSG00000230716.3 processed_pseudogene KRT8P7 1 OTTHUMG00000166175.1 pseudo_consens +16648 chr11 ENSEMBL gene 119656311 119656416 106.0 + 0 ENSG00000199217.1 snRNA RNU6-1123P 3 +16649 chr11 HAVANA gene 119608423 119659284 4476.0 + 0 ENSG00000254561.3 antisense AP003393.1 2 OTTHUMG00000166176.2 ncRNA_host +16650 chr11 HAVANA gene 119709920 119713925 559.0 + 0 ENSG00000255247.1 lincRNA AP003390.2 1 OTTHUMG00000166178.1 +16651 chr11 HAVANA gene 119623408 119729084 7701.0 - 0 ENSG00000110400.10 protein_coding NECTIN1 1 OTTHUMG00000166177.3 +16652 chr11 HAVANA gene 119729583 119739623 523.0 + 0 ENSG00000254854.1 antisense AP003390.1 2 OTTHUMG00000166179.1 +16653 chr11 HAVANA gene 119821304 119822129 826.0 - 0 ENSG00000254406.1 processed_pseudogene AP001994.1 1 OTTHUMG00000166135.1 pseudo_consens +16654 chr11 HAVANA gene 119987954 119995037 1250.0 - 0 ENSG00000254863.1 lincRNA AP001360.1 1 OTTHUMG00000166136.1 +16655 chr11 HAVANA gene 120008604 120012158 562.0 - 0 ENSG00000255216.1 lincRNA AP001360.2 1 OTTHUMG00000166137.1 +16656 chr11 HAVANA gene 120168977 120171679 2081.0 + 0 ENSG00000176984.6 antisense AP000679.1 2 OTTHUMG00000166138.3 +16657 chr11 HAVANA gene 120111275 120185529 10218.0 - 0 ENSG00000137699.16 protein_coding TRIM29 1 OTTHUMG00000140377.7 +16658 chr11 HAVANA gene 120210767 120230332 3176.0 + 0 ENSG00000184232.8 protein_coding OAF 2 OTTHUMG00000166139.2 +16659 chr11 HAVANA gene 120249759 120265932 2600.0 - 0 ENSG00000259541.5 antisense AP001150.1 2 OTTHUMG00000171955.1 +16660 chr11 HAVANA gene 120236640 120319944 6645.0 + 0 ENSG00000137709.9 protein_coding POU2F3 2 OTTHUMG00000166140.4 +16661 chr11 HAVANA gene 120325129 120333682 4468.0 + 0 ENSG00000181264.8 protein_coding TMEM136 2 OTTHUMG00000166142.1 +16662 chr11 ENSEMBL gene 120365666 120365963 298.0 + 0 ENSG00000274303.1 misc_RNA RF00100 3 +16663 chr11 HAVANA gene 120336914 120489936 24404.0 + 0 ENSG00000196914.8 protein_coding ARHGEF12 2 OTTHUMG00000166143.3 ncRNA_host +16664 chr11 HAVANA gene 120619934 120620267 334.0 - 0 ENSG00000255006.1 processed_pseudogene ELOCP22 1 OTTHUMG00000166091.1 pseudo_consens +16665 chr11 HAVANA gene 120867933 120894797 6314.0 - 0 ENSG00000250493.2 antisense AP004147.1 2 OTTHUMG00000166092.1 +16666 chr11 HAVANA gene 120936102 120936654 553.0 - 0 ENSG00000254735.1 processed_pseudogene HMGB1P42 1 OTTHUMG00000166093.1 pseudo_consens +16667 chr11 HAVANA gene 120511700 120988904 7518.0 + 0 ENSG00000149403.12 protein_coding GRIK4 2 OTTHUMG00000048255.8 +16668 chr11 HAVANA gene 121024072 121090775 7020.0 + 0 ENSG00000154114.12 protein_coding TBCEL 1 OTTHUMG00000166061.4 +16669 chr11 HAVANA gene 121024125 121113108 2888.0 + 0 ENSG00000285509.1 protein_coding AP000646.1 2 OTTHUMG00000192615.1 +16670 chr11 HAVANA gene 121101173 121191493 8383.0 + 0 ENSG00000109927.10 protein_coding TECTA 1 OTTHUMG00000149908.4 +16671 chr11 HAVANA gene 121238304 121238688 385.0 + 0 ENSG00000254515.1 processed_pseudogene AP001124.1 1 OTTHUMG00000166067.1 pseudo_consens +16672 chr11 HAVANA gene 121250270 121250978 709.0 - 0 ENSG00000244400.2 processed_pseudogene RPS4XP12 1 OTTHUMG00000158474.2 pseudo_consens +16673 chr11 HAVANA gene 121292453 121308694 5566.0 + 0 ENSG00000109929.9 protein_coding SC5D 1 OTTHUMG00000166068.2 +16674 chr11 HAVANA gene 121361854 121362865 1012.0 - 0 ENSG00000232460.4 processed_pseudogene BMPR1AP2 1 OTTHUMG00000166069.1 pseudo_consens +16675 chr11 HAVANA gene 121426645 121427416 772.0 - 0 ENSG00000271022.1 processed_pseudogene AP002365.1 1 OTTHUMG00000184782.1 pseudo_consens +16676 chr11 HAVANA gene 121447331 121453013 2908.0 - 0 ENSG00000246790.2 antisense AP000977.1 2 OTTHUMG00000166056.1 +16677 chr11 HAVANA gene 121452203 121633693 19449.0 + 0 ENSG00000137642.12 protein_coding SORL1 1 OTTHUMG00000166057.3 +16678 chr11 ENSEMBL gene 122004355 122004451 97.0 + 0 ENSG00000252556.1 snRNA RNU6-256P 3 +16679 chr11 ENSEMBL gene 122099757 122099844 88.0 - 0 ENSG00000207971.1 miRNA MIR125B1 3 +16680 chr11 HAVANA gene 122115354 122116215 862.0 - 0 ENSG00000259571.1 protein_coding BLID 2 OTTHUMG00000166060.1 overlapping_locus +16681 chr11 ENSEMBL gene 122146522 122146593 72.0 - 0 ENSG00000198975.2 miRNA MIRLET7A2 3 +16682 chr11 ENSEMBL gene 122152229 122152308 80.0 - 0 ENSG00000207994.1 miRNA MIR100 3 +16683 chr11 HAVANA gene 122294938 122301763 507.0 - 0 ENSG00000255015.1 lincRNA AP000755.1 2 OTTHUMG00000166037.1 overlapping_locus +16684 chr11 HAVANA gene 122295190 122308019 571.0 + 0 ENSG00000255219.1 antisense AP000755.2 2 OTTHUMG00000166038.1 +16685 chr11 ENSEMBL gene 122449210 122449331 122.0 + 0 ENSG00000252776.1 snRNA RNU4ATAC10P 3 +16686 chr11 ENSEMBL gene 122451474 122451599 126.0 + 0 ENSG00000253035.1 snRNA RNU4ATAC5P 3 +16687 chr11 HAVANA gene 122028327 122556721 11009.0 - 0 ENSG00000255248.8 processed_transcript MIR100HG 2 OTTHUMG00000166035.5 ncRNA_host +16688 chr11 ENSEMBL gene 122579205 122579307 103.0 - 0 ENSG00000223265.1 snRNA RNU6-592P 3 +16689 chr11 HAVANA gene 122613444 122614486 1043.0 - 0 ENSG00000254572.2 processed_pseudogene GLULP3 1 OTTHUMG00000166039.2 pseudo_consens +16690 chr11 HAVANA gene 122618851 122619274 424.0 + 0 ENSG00000254935.1 processed_pseudogene AP002469.1 1 OTTHUMG00000166040.1 pseudo_consens +16691 chr11 ENSEMBL gene 122726208 122726311 104.0 - 0 ENSG00000239079.1 snoRNA RF01210 3 +16692 chr11 HAVANA gene 122655675 122814473 9011.0 + 0 ENSG00000154127.9 protein_coding UBASH3B 2 OTTHUMG00000166025.1 +16693 chr11 HAVANA gene 122751147 122851617 1718.0 - 0 ENSG00000285909.1 antisense AP002762.1 2 OTTHUMG00000192866.1 +16694 chr11 HAVANA gene 122838500 122872639 2675.0 + 0 ENSG00000109943.8 protein_coding CRTAM 2 OTTHUMG00000166026.1 +16695 chr11 ENSEMBL gene 122927034 122927173 140.0 + 0 ENSG00000199709.1 snRNA RNU4-23P 3 +16696 chr11 HAVANA gene 122882528 122959798 4680.0 + 0 ENSG00000109944.10 protein_coding JHY 2 OTTHUMG00000166027.2 ncRNA_host +16697 chr11 HAVANA gene 122960327 122961086 760.0 + 0 ENSG00000254944.1 processed_pseudogene ATP5PBP5 1 OTTHUMG00000166028.1 pseudo_consens +16698 chr11 HAVANA gene 122977570 122981720 830.0 - 0 ENSG00000188909.4 protein_coding BSX 2 OTTHUMG00000150247.1 +16699 chr11 HAVANA gene 123017638 123018661 1024.0 + 0 ENSG00000213184.3 processed_pseudogene AP003040.1 1 OTTHUMG00000166029.1 pseudo_consens +16700 chr11 HAVANA gene 123035867 123036224 358.0 + 0 ENSG00000243669.2 processed_pseudogene RPL34P23 1 OTTHUMG00000158475.2 pseudo_consens +16701 chr11 HAVANA gene 123049787 123050353 299.0 - 0 ENSG00000244641.2 processed_pseudogene RPS26P43 1 OTTHUMG00000158478.2 pseudo_consens +16702 chr11 HAVANA gene 123051161 123051401 241.0 + 0 ENSG00000233541.4 processed_pseudogene RPL31P47 1 OTTHUMG00000158479.2 pseudo_consens +16703 chr11 ENSEMBL gene 123058077 123058161 85.0 - 0 ENSG00000200879.1 snoRNA SNORD14E 3 +16704 chr11 ENSEMBL gene 123058909 123058995 87.0 - 0 ENSG00000207118.1 snoRNA SNORD14D 3 +16705 chr11 ENSEMBL gene 123059335 123059422 88.0 - 0 ENSG00000202252.1 snoRNA SNORD14C 3 +16706 chr11 HAVANA gene 123057489 123063230 4849.0 - 0 ENSG00000109971.13 protein_coding HSPA8 1 OTTHUMG00000166030.2 ncRNA_host +16707 chr11 HAVANA gene 123135923 123136376 454.0 - 0 ENSG00000255342.1 processed_pseudogene AP000926.1 1 OTTHUMG00000166032.1 pseudo_consens,overlapping_locus +16708 chr11 HAVANA gene 123069865 123195281 5097.0 - 0 ENSG00000166250.11 protein_coding CLMP 1 OTTHUMG00000166031.2 overlapping_locus +16709 chr11 HAVANA gene 123188802 123228277 701.0 + 0 ENSG00000254710.1 antisense AP001970.1 2 OTTHUMG00000166033.1 +16710 chr11 ENSEMBL gene 123301390 123301523 134.0 + 0 ENSG00000200496.1 snoRNA RF00096 3 +16711 chr11 HAVANA gene 123313674 123314770 477.0 - 0 ENSG00000254823.1 lincRNA AP001782.1 2 OTTHUMG00000166000.1 +16712 chr11 HAVANA gene 123340174 123340714 541.0 - 0 ENSG00000254407.1 processed_pseudogene PHBP17 1 OTTHUMG00000166001.1 pseudo_consens +16713 chr11 ENSEMBL gene 123381440 123381512 73.0 - 0 ENSG00000265357.1 miRNA MIR4493 3 +16714 chr11 HAVANA gene 123597946 123599452 1507.0 - 0 ENSG00000254449.1 processed_pseudogene SF3A3P2 1 OTTHUMG00000166005.1 pseudo_consens +16715 chr11 HAVANA gene 123358428 123627774 14408.0 + 0 ENSG00000023171.17 protein_coding GRAMD1B 2 OTTHUMG00000166004.6 +16716 chr11 HAVANA gene 123629187 123655244 9464.0 - 0 ENSG00000166257.8 protein_coding SCN3B 1 OTTHUMG00000166006.2 +16717 chr11 HAVANA gene 123668499 123671637 666.0 + 0 ENSG00000254467.1 lincRNA AP002765.1 2 OTTHUMG00000166007.1 +16718 chr11 HAVANA gene 123724177 123741675 4808.0 - 0 ENSG00000166261.10 protein_coding ZNF202 1 OTTHUMG00000166008.2 +16719 chr11 HAVANA gene 123753488 123754545 1058.0 - 0 ENSG00000221931.2 protein_coding OR6X1 2 OTTHUMG00000166011.1 +16720 chr11 ENSEMBL gene 123763927 123764089 163.0 + 0 ENSG00000200197.1 snRNA RNU1-21P 3 +16721 chr11 HAVANA gene 123805335 123806387 1053.0 - 0 ENSG00000196099.4 protein_coding OR6M1 2 OTTHUMG00000166012.1 +16722 chr11 HAVANA gene 123839035 123841930 2187.0 - 0 ENSG00000254613.2 transcribed_unprocessed_pseudogene OR6M2P 2 OTTHUMG00000166013.2 +16723 chr11 HAVANA gene 123861822 123862521 700.0 - 0 ENSG00000254430.1 unprocessed_pseudogene OR6M3P 2 OTTHUMG00000166014.1 +16724 chr11 HAVANA gene 123882926 123885642 1107.0 - 0 ENSG00000204300.6 protein_coding TMEM225 1 OTTHUMG00000165959.3 +16725 chr11 HAVANA gene 123902167 123909229 3175.0 + 0 ENSG00000181518.4 protein_coding OR8D4 2 OTTHUMG00000165960.2 +16726 chr11 HAVANA gene 123939543 123940637 1095.0 + 0 ENSG00000171014.2 protein_coding OR4D5 2 OTTHUMG00000165961.1 +16727 chr11 HAVANA gene 123942785 123943873 1089.0 - 0 ENSG00000181499.2 protein_coding OR6T1 2 OTTHUMG00000165962.1 +16728 chr11 HAVANA gene 123976661 123977781 1121.0 - 0 ENSG00000196248.5 protein_coding OR10S1 2 OTTHUMG00000165963.3 +16729 chr11 HAVANA gene 123994163 123995161 999.0 - 0 ENSG00000198674.3 protein_coding OR10G6 2 OTTHUMG00000165964.3 +16730 chr11 HAVANA gene 124009655 124010012 358.0 + 0 ENSG00000226461.3 unprocessed_pseudogene OR10G5P 2 OTTHUMG00000165965.1 +16731 chr11 HAVANA gene 124012997 124018732 3623.0 + 0 ENSG00000254737.2 protein_coding OR10G4 2 OTTHUMG00000165966.3 +16732 chr11 HAVANA gene 124023013 124023948 936.0 + 0 ENSG00000236981.1 protein_coding OR10G9 2 OTTHUMG00000165967.2 +16733 chr11 HAVANA gene 124026798 124030634 1115.0 + 0 ENSG00000234560.4 protein_coding OR10G8 2 OTTHUMG00000165968.2 +16734 chr11 HAVANA gene 124036013 124041325 3449.0 - 0 ENSG00000182634.8 protein_coding OR10G7 2 OTTHUMG00000165969.4 +16735 chr11 HAVANA gene 124054793 124055707 915.0 + 0 ENSG00000213182.4 unprocessed_pseudogene OR10D5P 2 OTTHUMG00000154389.3 +16736 chr11 HAVANA gene 124093582 124094532 951.0 - 0 ENSG00000186268.3 unprocessed_pseudogene OR10D4P 2 OTTHUMG00000165970.1 +16737 chr11 HAVANA gene 124104965 124111092 1479.0 - 0 ENSG00000213181.3 transcribed_unprocessed_pseudogene OR10N1P 2 OTTHUMG00000154290.2 +16738 chr11 HAVANA gene 124115362 124147721 6403.0 + 0 ENSG00000110002.15 protein_coding VWA5A 1 OTTHUMG00000165971.2 +16739 chr11 HAVANA gene 124158421 124159356 936.0 + 0 ENSG00000196403.4 unprocessed_pseudogene OR10D1P 2 OTTHUMG00000154292.1 +16740 chr11 HAVANA gene 124183345 124188780 3648.0 + 0 ENSG00000197309.3 protein_coding OR10D3 2 OTTHUMG00000165166.3 +16741 chr11 HAVANA gene 124207183 124208112 930.0 + 0 ENSG00000239426.4 unprocessed_pseudogene OR8F1P 2 OTTHUMG00000154391.1 +16742 chr11 HAVANA gene 124211707 124215828 1344.0 + 0 ENSG00000255425.5 transcribed_unprocessed_pseudogene OR8G3P 2 OTTHUMG00000165972.3 +16743 chr11 HAVANA gene 124224732 124225639 908.0 + 0 ENSG00000181214.7 unprocessed_pseudogene OR8G2P 2 OTTHUMG00000154394.2 +16744 chr11 HAVANA gene 124238420 124239486 848.0 + 0 ENSG00000276316.1 unprocessed_pseudogene OR8G7P 2 OTTHUMG00000165974.2 +16745 chr11 HAVANA gene 124241095 124254364 5055.0 + 0 ENSG00000197849.6 protein_coding OR8G1 2 OTTHUMG00000189223.3 +16746 chr11 HAVANA gene 124256376 124266218 1674.0 + 0 ENSG00000255298.3 protein_coding OR8G5 2 OTTHUMG00000186059.3 +16747 chr11 HAVANA gene 124273970 124274581 612.0 + 0 ENSG00000255116.2 processed_pseudogene SLC5A4P1 1 OTTHUMG00000165976.2 pseudo_consens +16748 chr11 HAVANA gene 124302831 124315099 8507.0 - 0 ENSG00000196341.3 protein_coding OR8D1 2 OTTHUMG00000165977.2 +16749 chr11 HAVANA gene 124319238 124320288 1051.0 - 0 ENSG00000279116.2 protein_coding OR8D2 2 OTTHUMG00000165978.1 +16750 chr11 HAVANA gene 124324871 124325789 919.0 - 0 ENSG00000254976.1 unprocessed_pseudogene OR8B7P 2 OTTHUMG00000165979.1 +16751 chr11 HAVANA gene 124338783 124339662 880.0 - 0 ENSG00000255225.1 unprocessed_pseudogene OR8B6P 2 OTTHUMG00000165980.1 +16752 chr11 HAVANA gene 124357560 124358469 910.0 - 0 ENSG00000255030.1 unprocessed_pseudogene OR8B5P 2 OTTHUMG00000165981.1 +16753 chr11 HAVANA gene 124365465 124367298 1178.0 - 0 ENSG00000227737.3 transcribed_unprocessed_pseudogene OR8B1P 2 OTTHUMG00000154392.2 +16754 chr11 HAVANA gene 124376877 124377801 925.0 - 0 ENSG00000229254.1 unprocessed_pseudogene OR8C1P 2 OTTHUMG00000154390.1 +16755 chr11 HAVANA gene 124382394 124384462 1056.0 - 0 ENSG00000284680.1 protein_coding OR8B2 2 OTTHUMG00000165982.2 +16756 chr11 HAVANA gene 124395534 124399024 2170.0 - 0 ENSG00000284609.1 protein_coding OR8B3 2 OTTHUMG00000165983.2 +16757 chr11 HAVANA gene 124404234 124405102 869.0 - 0 ENSG00000255048.1 unprocessed_pseudogene OR8X1P 2 OTTHUMG00000165984.1 +16758 chr11 HAVANA gene 124406997 124414792 4976.0 - 0 ENSG00000285561.1 lincRNA AP001804.1 2 OTTHUMG00000192985.1 +16759 chr11 HAVANA gene 124423904 124424893 990.0 - 0 ENSG00000280090.2 protein_coding OR8B4 2 OTTHUMG00000165916.1 +16760 chr11 HAVANA gene 124437445 124445696 3971.0 - 0 ENSG00000197125.3 protein_coding OR8B8 2 OTTHUMG00000165917.2 +16761 chr11 HAVANA gene 124460534 124461485 952.0 + 0 ENSG00000255510.1 unprocessed_pseudogene OR8A2P 2 OTTHUMG00000165918.1 +16762 chr11 HAVANA gene 124476963 124482870 5216.0 - 0 ENSG00000229386.3 transcribed_unprocessed_pseudogene OR8B9P 2 OTTHUMG00000154393.3 +16763 chr11 HAVANA gene 124516311 124517242 932.0 - 0 ENSG00000254646.1 unprocessed_pseudogene OR8B10P 2 OTTHUMG00000165919.1 +16764 chr11 HAVANA gene 124531625 124531910 286.0 + 0 ENSG00000255315.1 unprocessed_pseudogene OR8A3P 2 OTTHUMG00000165920.1 +16765 chr11 HAVANA gene 124538500 124539334 835.0 - 0 ENSG00000254937.1 unprocessed_pseudogene AP000916.1 2 OTTHUMG00000165921.1 +16766 chr11 HAVANA gene 124539635 124545333 2147.0 - 0 ENSG00000170953.3 protein_coding OR8B12 2 OTTHUMG00000165922.2 +16767 chr11 HAVANA gene 124566660 124582942 6088.0 + 0 ENSG00000196119.7 protein_coding OR8A1 2 OTTHUMG00000165923.2 +16768 chr11 HAVANA gene 124601584 124602238 655.0 + 0 ENSG00000255341.1 unprocessed_pseudogene OR8Q1P 2 OTTHUMG00000165924.1 +16769 chr11 HAVANA gene 124611490 124620356 1667.0 + 0 ENSG00000154143.2 protein_coding PANX3 2 OTTHUMG00000165925.1 +16770 chr11 HAVANA gene 124622836 124635398 6627.0 + 0 ENSG00000154144.12 protein_coding TBRG1 1 OTTHUMG00000153024.4 +16771 chr11 ENSEMBL gene 124636459 124636592 134.0 + 0 ENSG00000200278.1 rRNA_pseudogene RNA5SP352 3 +16772 chr11 HAVANA gene 124633113 124695707 8139.0 - 0 ENSG00000110013.12 protein_coding SIAE 2 OTTHUMG00000165926.2 +16773 chr11 HAVANA gene 124673798 124697518 5205.0 + 0 ENSG00000064199.6 protein_coding SPA17 2 OTTHUMG00000165927.1 +16774 chr11 HAVANA gene 124744634 124746337 445.0 - 0 ENSG00000255045.1 antisense AP000866.5 2 OTTHUMG00000165929.1 +16775 chr11 HAVANA gene 124739846 124747210 1309.0 + 0 ENSG00000154146.12 protein_coding NRGN 2 OTTHUMG00000165928.3 +16776 chr11 HAVANA gene 124747472 124752238 1432.0 - 0 ENSG00000019102.11 protein_coding VSIG2 2 OTTHUMG00000150357.1 +16777 chr11 HAVANA gene 124752583 124762290 2920.0 - 0 ENSG00000149564.11 protein_coding ESAM 1 OTTHUMG00000151986.2 +16778 chr11 HAVANA gene 124759129 124765936 1538.0 + 0 ENSG00000250073.2 antisense AP000866.2 2 OTTHUMG00000165930.1 +16779 chr11 HAVANA gene 124791228 124791660 433.0 + 0 ENSG00000254509.1 processed_pseudogene AP000866.3 2 OTTHUMG00000165932.1 +16780 chr11 HAVANA gene 124789240 124792818 3579.0 - 0 ENSG00000279342.2 sense_intronic AP000866.6 2 OTTHUMG00000192034.1 +16781 chr11 HAVANA gene 124766498 124800673 4335.0 - 0 ENSG00000120458.11 protein_coding MSANTD2 1 OTTHUMG00000165931.3 +16782 chr11 HAVANA gene 124807822 124808269 448.0 - 0 ENSG00000254941.1 processed_pseudogene AP000866.4 1 OTTHUMG00000165933.1 pseudo_consens +16783 chr11 HAVANA gene 124800450 124834487 4854.0 + 0 ENSG00000245498.6 antisense AP000866.1 1 OTTHUMG00000166205.1 +16784 chr11 HAVANA gene 124865386 124881470 7026.0 + 0 ENSG00000154134.14 protein_coding ROBO3 1 OTTHUMG00000165934.2 +16785 chr11 HAVANA gene 124883691 124887789 744.0 + 0 ENSG00000254568.1 antisense AP003501.1 2 OTTHUMG00000165935.1 +16786 chr11 HAVANA gene 124891304 124892126 477.0 + 0 ENSG00000254943.1 antisense AP003501.2 2 OTTHUMG00000165937.1 +16787 chr11 HAVANA gene 124883691 124898500 7033.0 - 0 ENSG00000154133.14 protein_coding ROBO4 2 OTTHUMG00000165936.2 +16788 chr11 HAVANA gene 124919244 124920677 1434.0 + 0 ENSG00000221932.6 protein_coding HEPN1 2 OTTHUMG00000165939.1 +16789 chr11 HAVANA gene 124919193 124936412 3829.0 - 0 ENSG00000165478.6 protein_coding HEPACAM 2 OTTHUMG00000165938.1 +16790 chr11 HAVANA gene 124950331 124953555 952.0 - 0 ENSG00000285825.1 lincRNA AP003501.3 2 OTTHUMG00000192911.1 +16791 chr11 HAVANA gene 124954121 125041489 4823.0 + 0 ENSG00000149548.14 protein_coding CCDC15 1 OTTHUMG00000165940.1 +16792 chr11 HAVANA gene 125063067 125090312 6371.0 + 0 ENSG00000134955.11 protein_coding SLC37A2 2 OTTHUMG00000165879.4 +16793 chr11 HAVANA gene 125096545 125111763 5424.0 - 0 ENSG00000150433.9 protein_coding TMEM218 1 OTTHUMG00000165880.2 +16794 chr11 HAVANA gene 125113161 125126781 3338.0 + 0 ENSG00000187686.4 transcribed_processed_pseudogene KRT18P59 1 OTTHUMG00000165881.1 pseudo_consens +16795 chr11 HAVANA gene 125132847 125139587 593.0 - 0 ENSG00000255475.1 lincRNA AP001007.2 2 OTTHUMG00000165882.1 +16796 chr11 HAVANA gene 125158461 125164609 586.0 - 0 ENSG00000254880.1 lincRNA PKNOX2-AS1 2 OTTHUMG00000165883.1 +16797 chr11 HAVANA gene 125188115 125191404 455.0 + 0 ENSG00000259290.1 sense_intronic AP001007.3 2 OTTHUMG00000172318.1 overlapping_locus +16798 chr11 HAVANA gene 125258626 125266798 645.0 - 0 ENSG00000254932.2 antisense AP001007.1 2 OTTHUMG00000172319.1 +16799 chr11 ENSEMBL gene 125277552 125277657 106.0 + 0 ENSG00000222844.1 snRNA RNU6-321P 3 +16800 chr11 HAVANA gene 125164687 125433389 6538.0 + 0 ENSG00000165495.15 protein_coding PKNOX2 2 OTTHUMG00000165884.4 ncRNA_host,overlapping_locus +16801 chr11 HAVANA gene 125495214 125499528 3423.0 + 0 ENSG00000255537.1 bidirectional_promoter_lncRNA AP000708.1 1 OTTHUMG00000133523.3 +16802 chr11 ENSEMBL gene 125574719 125574818 100.0 + 0 ENSG00000222297.1 snRNA RNU6-1156P 3 +16803 chr11 HAVANA gene 125569216 125584687 3558.0 + 0 ENSG00000149547.14 protein_coding EI24 1 OTTHUMG00000165851.7 ncRNA_host +16804 chr11 HAVANA gene 125442881 125592568 9324.0 - 0 ENSG00000149557.13 protein_coding FEZ1 1 OTTHUMG00000165886.7 +16805 chr11 HAVANA gene 125591712 125625215 7345.0 + 0 ENSG00000134910.13 protein_coding STT3A 1 OTTHUMG00000165852.6 +16806 chr11 ENSEMBL gene 125649746 125649887 142.0 + 0 ENSG00000252255.1 snRNA RNU2-35P 3 +16807 chr11 HAVANA gene 125625136 125676255 6558.0 + 0 ENSG00000149554.12 protein_coding CHEK1 2 OTTHUMG00000165853.6 ncRNA_host +16808 chr11 HAVANA gene 125671522 125681123 2212.0 - 0 ENSG00000134940.13 protein_coding ACRV1 2 OTTHUMG00000165854.1 +16809 chr11 HAVANA gene 125746293 125749867 2348.0 + 0 ENSG00000171053.9 protein_coding PATE1 2 OTTHUMG00000165855.2 +16810 chr11 HAVANA gene 125776113 125778819 1657.0 - 0 ENSG00000196844.8 protein_coding PATE2 2 OTTHUMG00000165856.1 +16811 chr11 HAVANA gene 125788111 125791600 1336.0 + 0 ENSG00000236027.2 protein_coding PATE3 2 OTTHUMG00000165857.1 +16812 chr11 HAVANA gene 125833316 125840069 2882.0 + 0 ENSG00000237353.6 protein_coding PATE4 1 OTTHUMG00000165235.2 +16813 chr11 HAVANA gene 125873031 125874528 1498.0 - 0 ENSG00000260209.1 lincRNA AP000842.3 2 OTTHUMG00000173206.1 +16814 chr11 HAVANA gene 125883614 125900648 2999.0 + 0 ENSG00000198331.10 protein_coding HYLS1 2 OTTHUMG00000165858.1 +16815 chr11 HAVANA gene 125893485 125903221 2010.0 - 0 ENSG00000110060.8 protein_coding PUS3 2 OTTHUMG00000165870.3 +16816 chr11 HAVANA gene 125903247 125938916 987.0 - 0 ENSG00000255027.2 antisense AP000842.2 1 OTTHUMG00000165871.2 +16817 chr11 HAVANA gene 125940496 125941193 698.0 - 0 ENSG00000254790.1 lincRNA AP000842.1 2 OTTHUMG00000165872.1 +16818 chr11 HAVANA gene 125903348 125943702 11167.0 + 0 ENSG00000109832.13 protein_coding DDX25 1 OTTHUMG00000165859.8 +16819 chr11 HAVANA gene 125946056 125958647 5111.0 + 0 ENSG00000283703.2 protein_coding VSIG10L2 2 OTTHUMG00000165861.5 +16820 chr11 HAVANA gene 125955796 126063335 10600.0 - 0 ENSG00000064309.14 protein_coding CDON 2 OTTHUMG00000165862.3 +16821 chr11 HAVANA gene 126067539 126068601 1063.0 + 0 ENSG00000254759.1 processed_pseudogene NAP1L1P1 1 OTTHUMG00000165873.1 pseudo_consens +16822 chr11 HAVANA gene 126100505 126102413 1909.0 - 0 ENSG00000261257.1 lincRNA AP000821.1 2 OTTHUMG00000173018.1 +16823 chr11 HAVANA gene 126160714 126176035 569.0 + 0 ENSG00000254833.1 lincRNA AP001893.3 2 OTTHUMG00000165813.1 +16824 chr11 HAVANA gene 126179497 126179698 202.0 - 0 ENSG00000254771.1 processed_pseudogene AP001893.2 2 OTTHUMG00000165814.1 +16825 chr11 HAVANA gene 126208611 126209027 362.0 - 0 ENSG00000254694.1 antisense AP001893.1 2 OTTHUMG00000165816.1 overlapping_locus +16826 chr11 HAVANA gene 126202094 126211692 4083.0 - 0 ENSG00000165526.8 protein_coding RPUSD4 2 OTTHUMG00000165815.4 overlapping_locus +16827 chr11 ENSEMBL gene 126214260 126214478 219.0 - 0 ENSG00000222067.1 snRNA RNU4-86P 3 +16828 chr11 ENSEMBL gene 126245035 126245282 248.0 + 0 ENSG00000240098.3 misc_RNA RN7SL351P 3 +16829 chr11 HAVANA gene 126211414 126262986 3846.0 + 0 ENSG00000197798.8 protein_coding FAM118B 1 OTTHUMG00000165817.3 ncRNA_host +16830 chr11 HAVANA gene 126262919 126269144 4167.0 - 0 ENSG00000182934.11 protein_coding SRPRA 1 OTTHUMG00000165826.2 +16831 chr11 HAVANA gene 126269055 126278131 5657.0 + 0 ENSG00000110074.10 protein_coding FOXRED1 2 OTTHUMG00000165827.1 +16832 chr11 HAVANA gene 126278257 126278577 321.0 - 0 ENSG00000243607.3 processed_pseudogene RPL35AP26 1 OTTHUMG00000158480.3 pseudo_consens +16833 chr11 HAVANA gene 126292922 126294254 492.0 - 0 ENSG00000254905.1 antisense AP001318.1 2 OTTHUMG00000166619.1 +16834 chr11 HAVANA gene 126283065 126298845 3591.0 + 0 ENSG00000150455.13 protein_coding TIRAP 1 OTTHUMG00000140373.4 +16835 chr11 HAVANA gene 126294298 126304318 629.0 - 0 ENSG00000255062.1 antisense AP001318.2 1 OTTHUMG00000165828.1 +16836 chr11 HAVANA gene 126303752 126345754 3936.0 + 0 ENSG00000110063.9 protein_coding DCPS 2 OTTHUMG00000165829.3 +16837 chr11 HAVANA gene 126340889 126355587 3723.0 - 0 ENSG00000280832.1 antisense GSEC 2 OTTHUMG00000189590.1 +16838 chr11 HAVANA gene 126376773 126376893 121.0 - 0 ENSG00000278215.1 processed_pseudogene AP001318.3 2 OTTHUMG00000187785.1 +16839 chr11 HAVANA gene 126355640 126440344 4465.0 + 0 ENSG00000110080.18 protein_coding ST3GAL4 1 OTTHUMG00000165830.4 +16840 chr11 HAVANA gene 126543947 126610948 586.0 + 0 ENSG00000257271.1 antisense KIRREL3-AS1 2 OTTHUMG00000169624.1 +16841 chr11 HAVANA gene 126652852 126682104 486.0 + 0 ENSG00000254607.2 antisense AP001783.1 1 OTTHUMG00000165802.2 +16842 chr11 HAVANA gene 126934886 126937150 2265.0 - 0 ENSG00000279358.1 TEC AP002833.3 2 OTTHUMG00000186081.1 overlapping_locus +16843 chr11 HAVANA gene 126920188 126940659 566.0 - 0 ENSG00000254938.1 lincRNA AP002833.1 2 OTTHUMG00000165809.1 overlapping_locus +16844 chr11 HAVANA gene 126940746 126945090 494.0 + 0 ENSG00000254960.2 antisense KIRREL3-AS2 2 OTTHUMG00000165803.2 +16845 chr11 ENSEMBL gene 126988458 126988542 85.0 - 0 ENSG00000266215.1 miRNA MIR3167 3 +16846 chr11 HAVANA gene 126992452 126995458 462.0 + 0 ENSG00000255317.1 antisense AP002833.2 1 OTTHUMG00000165804.1 +16847 chr11 HAVANA gene 126423359 127003460 6594.0 - 0 ENSG00000149571.11 protein_coding KIRREL3 2 OTTHUMG00000165831.2 ncRNA_host,overlapping_locus +16848 chr11 HAVANA gene 127002910 127006058 1768.0 + 0 ENSG00000218109.5 antisense KIRREL3-AS3 2 OTTHUMG00000165805.2 +16849 chr11 HAVANA gene 127021754 127172363 6366.0 + 0 ENSG00000255087.3 lincRNA AP001993.1 1 OTTHUMG00000165810.2 +16850 chr11 HAVANA gene 127188885 127223449 1638.0 + 0 ENSG00000272642.2 lincRNA AP003121.1 2 OTTHUMG00000186083.2 +16851 chr11 HAVANA gene 127271029 127337033 742.0 + 0 ENSG00000273409.2 lincRNA AP003481.1 2 OTTHUMG00000186084.2 +16852 chr11 ENSEMBL gene 127406028 127406332 305.0 - 0 ENSG00000222774.1 misc_RNA RN7SKP121 3 +16853 chr11 ENSEMBL gene 127407851 127408148 298.0 + 0 ENSG00000223315.1 misc_RNA RN7SKP279 3 +16854 chr11 HAVANA gene 127657568 127657877 310.0 + 0 ENSG00000254591.1 processed_pseudogene AP003532.1 1 OTTHUMG00000165801.1 pseudo_consens +16855 chr11 HAVANA gene 127940913 127941654 742.0 - 0 ENSG00000254612.2 processed_pseudogene AP001000.1 1 OTTHUMG00000165798.2 pseudo_consens +16856 chr11 HAVANA gene 128096042 128183554 1959.0 + 0 ENSG00000273415.2 lincRNA AP000904.1 2 OTTHUMG00000186085.3 +16857 chr11 HAVANA gene 128208749 128241441 986.0 + 0 ENSG00000272575.6 lincRNA LINC02098 2 OTTHUMG00000186086.3 +16858 chr11 ENSEMBL gene 128522390 128522449 60.0 + 0 ENSG00000276176.1 miRNA MIR6090 3 +16859 chr11 HAVANA gene 128526142 128530389 1387.0 + 0 ENSG00000254588.1 antisense ETS1-AS1 1 OTTHUMG00000165800.1 +16860 chr11 HAVANA gene 128458761 128587558 7149.0 - 0 ENSG00000134954.14 protein_coding ETS1 1 OTTHUMG00000165799.4 +16861 chr11 HAVANA gene 128614340 128686922 4479.0 - 0 ENSG00000245008.4 bidirectional_promoter_lncRNA AP001122.1 2 OTTHUMG00000165791.3 +16862 chr11 HAVANA gene 128691672 128696023 1298.0 - 0 ENSG00000254703.2 antisense SENCR 2 OTTHUMG00000165793.2 +16863 chr11 HAVANA gene 128686535 128813267 8172.0 + 0 ENSG00000151702.16 protein_coding FLI1 1 OTTHUMG00000165792.4 +16864 chr11 HAVANA gene 128836315 128867373 4637.0 - 0 ENSG00000151704.15 protein_coding KCNJ1 1 OTTHUMG00000048247.4 +16865 chr11 HAVANA gene 128880325 128880668 344.0 - 0 ENSG00000255369.1 processed_pseudogene AP000920.1 1 OTTHUMG00000165794.1 pseudo_consens +16866 chr11 HAVANA gene 128899565 128906035 3750.0 - 0 ENSG00000174370.9 protein_coding C11orf45 1 OTTHUMG00000165796.2 +16867 chr11 HAVANA gene 128891356 128921035 6109.0 + 0 ENSG00000120457.11 protein_coding KCNJ5 1 OTTHUMG00000165795.2 +16868 chr11 HAVANA gene 128934731 128943399 3445.0 - 0 ENSG00000120471.15 protein_coding TP53AIP1 2 OTTHUMG00000165797.3 +16869 chr11 ENSEMBL gene 128993237 128993340 104.0 - 0 ENSG00000212597.1 snRNA RNU6-876P 3 +16870 chr11 ENSEMBL gene 129030459 129030572 114.0 + 0 ENSG00000206847.1 misc_RNA RF00019 3 +16871 chr11 ENSEMBL gene 129202966 129203070 105.0 + 0 ENSG00000199260.1 snRNA RNU6-874P 3 +16872 chr11 HAVANA gene 128965060 129279324 12841.0 - 0 ENSG00000134909.18 protein_coding ARHGAP32 1 OTTHUMG00000165774.4 ncRNA_host +16873 chr11 HAVANA gene 129295286 129296481 1196.0 - 0 ENSG00000255259.2 processed_pseudogene ZNF123P 2 OTTHUMG00000165775.2 +16874 chr11 HAVANA gene 129375940 129452279 3660.0 + 0 ENSG00000043039.6 protein_coding BARX2 2 OTTHUMG00000165776.4 +16875 chr11 HAVANA gene 129537869 129538114 246.0 + 0 ENSG00000240121.1 processed_pseudogene RPS27P20 1 OTTHUMG00000158482.1 pseudo_consens +16876 chr11 HAVANA gene 129591493 129612110 527.0 + 0 ENSG00000281386.1 lincRNA AP003500.1 2 OTTHUMG00000189542.1 +16877 chr11 HAVANA gene 129612116 129617269 982.0 - 0 ENSG00000281097.1 lincRNA LINC01395 2 OTTHUMG00000189543.1 +16878 chr11 HAVANA gene 129788064 129788190 127.0 - 0 ENSG00000255188.1 processed_pseudogene AP003327.1 2 OTTHUMG00000165759.1 +16879 chr11 HAVANA gene 129815819 129860003 3027.0 + 0 ENSG00000151715.7 protein_coding TMEM45B 1 OTTHUMG00000165760.3 +16880 chr11 HAVANA gene 129863636 129895590 6335.0 - 0 ENSG00000170322.14 protein_coding NFRKB 2 OTTHUMG00000165761.4 +16881 chr11 HAVANA gene 129899706 130002835 6626.0 - 0 ENSG00000170325.14 protein_coding PRDM10 1 OTTHUMG00000165762.2 +16882 chr11 HAVANA gene 130002938 130004356 1419.0 + 0 ENSG00000233220.3 lincRNA LINC00167 2 OTTHUMG00000165763.1 +16883 chr11 HAVANA gene 130008586 130009765 1180.0 + 0 ENSG00000255057.1 processed_pseudogene AP003041.1 2 OTTHUMG00000165764.1 +16884 chr11 HAVANA gene 130032866 130033220 355.0 - 0 ENSG00000255262.3 processed_pseudogene ELOBP2 1 OTTHUMG00000165765.1 pseudo_consens +16885 chr11 HAVANA gene 130040365 130041071 707.0 + 0 ENSG00000255535.2 processed_pseudogene AP003041.2 1 OTTHUMG00000165766.2 pseudo_consens +16886 chr11 HAVANA gene 130082495 130082781 287.0 - 0 ENSG00000244451.1 processed_pseudogene RPL34P21 1 OTTHUMG00000158483.1 pseudo_consens +16887 chr11 ENSEMBL gene 130114251 130114335 85.0 - 0 ENSG00000274197.1 snRNA RF00015 3 +16888 chr11 HAVANA gene 130068147 130144811 7463.0 + 0 ENSG00000084234.17 protein_coding APLP2 1 OTTHUMG00000165767.5 +16889 chr11 HAVANA gene 130159562 130210376 4350.0 + 0 ENSG00000149418.10 protein_coding ST14 2 OTTHUMG00000165768.1 +16890 chr11 HAVANA gene 130285023 130285833 510.0 - 0 ENSG00000255358.1 processed_pseudogene AC019227.1 1 OTTHUMG00000165770.1 pseudo_consens,overlapping_locus +16891 chr11 HAVANA gene 130295641 130296946 1306.0 + 0 ENSG00000255220.1 processed_pseudogene DDX18P5 1 OTTHUMG00000165771.1 pseudo_consens +16892 chr11 ENSEMBL gene 130310180 130310476 297.0 + 0 ENSG00000272412.2 misc_RNA RN7SL778P 3 +16893 chr11 HAVANA gene 130226677 130314908 11023.0 - 0 ENSG00000196323.13 protein_coding ZBTB44 1 OTTHUMG00000165769.4 overlapping_locus +16894 chr11 HAVANA gene 130314993 130403657 2628.0 + 0 ENSG00000175773.13 lincRNA AP002986.1 2 OTTHUMG00000165655.5 +16895 chr11 HAVANA gene 130404925 130428993 4523.0 - 0 ENSG00000134917.9 protein_coding ADAMTS8 2 OTTHUMG00000165656.2 +16896 chr11 HAVANA gene 130448974 130476641 5673.0 + 0 ENSG00000166106.3 protein_coding ADAMTS15 2 OTTHUMG00000165657.2 +16897 chr11 HAVANA gene 130544643 130544856 214.0 - 0 ENSG00000255155.1 processed_pseudogene AP004371.1 1 OTTHUMG00000165658.1 pseudo_consens +16898 chr11 HAVANA gene 130546799 130547429 631.0 - 0 ENSG00000236616.3 processed_pseudogene BAK1P2 1 OTTHUMG00000165659.1 pseudo_consens +16899 chr11 ENSEMBL gene 130666735 130666803 69.0 + 0 ENSG00000274999.1 miRNA MIR8052 3 +16900 chr11 HAVANA gene 130672956 130717352 3547.0 + 0 ENSG00000175728.4 lincRNA C11orf44 2 OTTHUMG00000150705.1 +16901 chr11 HAVANA gene 130789231 130791025 1795.0 - 0 ENSG00000255352.1 processed_pseudogene PPP1R10P1 2 OTTHUMG00000165660.1 +16902 chr11 HAVANA gene 130844191 130865561 2255.0 - 0 ENSG00000254842.6 lincRNA LINC02551 1 OTTHUMG00000165661.2 +16903 chr11 HAVANA gene 130866254 130870247 3994.0 - 0 ENSG00000255455.2 lincRNA AP003486.1 2 OTTHUMG00000165662.2 +16904 chr11 HAVANA gene 130875436 130916509 8152.0 - 0 ENSG00000120451.10 protein_coding SNX19 2 OTTHUMG00000165663.1 +16905 chr11 ENSEMBL gene 131004128 131004429 302.0 - 0 ENSG00000242673.3 misc_RNA RN7SL167P 3 +16906 chr11 HAVANA gene 131187022 131189753 635.0 + 0 ENSG00000236129.1 lincRNA AP002856.3 2 OTTHUMG00000066362.2 +16907 chr11 HAVANA gene 131204999 131215163 562.0 + 0 ENSG00000227125.1 lincRNA AP002856.1 2 OTTHUMG00000150049.1 +16908 chr11 HAVANA gene 131234538 131251816 569.0 + 0 ENSG00000237612.1 lincRNA AP002856.4 1 OTTHUMG00000150045.1 +16909 chr11 HAVANA gene 131253422 131350917 1193.0 + 0 ENSG00000231698.2 lincRNA AP002856.2 2 OTTHUMG00000066363.2 +16910 chr11 ENSEMBL gene 131385249 131385363 115.0 + 0 ENSG00000252351.1 snRNA RNU6ATAC12P 3 +16911 chr11 HAVANA gene 131502759 131540867 4715.0 - 0 ENSG00000237654.5 antisense AP003025.1 2 OTTHUMG00000066440.1 +16912 chr11 HAVANA gene 131546662 131581145 2784.0 - 0 ENSG00000285980.1 antisense AP003025.2 2 OTTHUMG00000184004.2 +16913 chr11 HAVANA gene 131662131 131663583 703.0 - 0 ENSG00000224795.1 lincRNA NTM-AS1 2 OTTHUMG00000066439.2 +16914 chr11 HAVANA gene 131770795 131771638 844.0 - 0 ENSG00000271624.1 processed_pseudogene AP004372.1 1 OTTHUMG00000184781.1 pseudo_consens +16915 chr11 HAVANA gene 131877680 131897108 509.0 - 0 ENSG00000238117.1 antisense AP000844.2 1 OTTHUMG00000150050.1 +16916 chr11 HAVANA gene 131981096 131984661 577.0 - 0 ENSG00000224700.2 antisense AP000844.1 2 OTTHUMG00000184005.1 +16917 chr11 HAVANA gene 132284302 132285081 373.0 + 0 ENSG00000238262.1 sense_intronic NTM-IT 2 OTTHUMG00000150047.1 overlapping_locus +16918 chr11 HAVANA gene 131370478 132336822 6956.0 + 0 ENSG00000182667.14 protein_coding NTM 1 OTTHUMG00000066364.16 ncRNA_host,overlapping_locus +16919 chr11 HAVANA gene 132403360 132404060 701.0 - 0 ENSG00000279090.1 TEC AP000843.1 2 OTTHUMG00000163670.3 +16920 chr11 ENSEMBL gene 132525809 132525887 79.0 + 0 ENSG00000283489.1 snRNA RF00026 3 +16921 chr11 HAVANA gene 132771623 132773371 1749.0 - 0 ENSG00000279497.1 TEC AP003784.1 2 OTTHUMG00000167115.1 overlapping_locus +16922 chr11 HAVANA gene 132859245 132860077 398.0 - 0 ENSG00000255371.1 sense_intronic OPCML-IT2 2 OTTHUMG00000167116.1 overlapping_locus +16923 chr11 HAVANA gene 133064697 133068129 3433.0 + 0 ENSG00000279711.1 TEC AP004782.1 2 OTTHUMG00000167084.1 +16924 chr11 HAVANA gene 133297189 133302634 5446.0 - 0 ENSG00000279189.1 TEC AP003972.1 2 OTTHUMG00000167117.1 overlapping_locus +16925 chr11 HAVANA gene 133360029 133366080 2936.0 - 0 ENSG00000254896.1 sense_intronic OPCML-IT1 2 OTTHUMG00000167118.1 overlapping_locus +16926 chr11 HAVANA gene 132414977 133532519 7583.0 - 0 ENSG00000183715.13 protein_coding OPCML 2 OTTHUMG00000163658.4 overlapping_locus +16927 chr11 HAVANA gene 133783671 133810376 975.0 - 0 ENSG00000255258.2 lincRNA AP001979.2 2 OTTHUMG00000167119.3 +16928 chr11 HAVANA gene 133840631 133845538 898.0 - 0 ENSG00000166118.7 protein_coding SPATA19 2 OTTHUMG00000167120.1 +16929 chr11 HAVANA gene 133864877 133865627 751.0 - 0 ENSG00000213153.3 processed_pseudogene AP001979.1 1 OTTHUMG00000167121.1 pseudo_consens +16930 chr11 ENSEMBL gene 133898504 133898581 78.0 - 0 ENSG00000284020.1 miRNA MIR4697 3 +16931 chr11 HAVANA gene 133896438 133901601 5164.0 - 0 ENSG00000280237.3 TEC MIR4697HG 2 OTTHUMG00000167122.1 ncRNA_host +16932 chr11 HAVANA gene 133908564 133956985 5753.0 - 0 ENSG00000080854.14 protein_coding IGSF9B 1 OTTHUMG00000167124.3 +16933 chr11 HAVANA gene 134026900 134030167 948.0 + 0 ENSG00000255406.2 lincRNA AP000911.3 1 OTTHUMG00000167171.2 +16934 chr11 HAVANA gene 134035832 134037107 1130.0 - 0 ENSG00000254648.1 lincRNA AP000911.2 2 OTTHUMG00000167126.1 +16935 chr11 HAVANA gene 134032272 134046849 4032.0 + 0 ENSG00000204241.7 lincRNA AP000911.1 2 OTTHUMG00000167125.1 +16936 chr11 HAVANA gene 134123828 134124329 502.0 - 0 ENSG00000254481.1 processed_pseudogene PTP4A2P2 1 OTTHUMG00000167127.1 pseudo_consens +16937 chr11 HAVANA gene 134068925 134152001 5451.0 + 0 ENSG00000166086.12 protein_coding JAM3 1 OTTHUMG00000167130.6 +16938 chr11 HAVANA gene 134173095 134173680 586.0 + 0 ENSG00000254616.1 processed_pseudogene AP001775.1 2 OTTHUMG00000167173.1 +16939 chr11 HAVANA gene 134178824 134186166 334.0 + 0 ENSG00000255348.1 antisense AP001775.2 2 OTTHUMG00000167174.1 +16940 chr11 HAVANA gene 134150119 134225454 9114.0 - 0 ENSG00000151503.12 protein_coding NCAPD3 1 OTTHUMG00000167172.6 +16941 chr11 HAVANA gene 134224645 134247792 6483.0 + 0 ENSG00000151502.10 protein_coding VPS26B 2 OTTHUMG00000167175.4 +16942 chr11 HAVANA gene 134248279 134253370 2119.0 - 0 ENSG00000151500.14 protein_coding THYN1 2 OTTHUMG00000167176.1 +16943 chr11 HAVANA gene 134253495 134265855 7174.0 + 0 ENSG00000151498.11 protein_coding ACAD8 2 OTTHUMG00000167177.1 +16944 chr11 HAVANA gene 134316782 134317088 307.0 - 0 ENSG00000254442.1 processed_pseudogene AP000859.1 1 OTTHUMG00000167178.1 pseudo_consens +16945 chr11 HAVANA gene 134274245 134319564 8945.0 + 0 ENSG00000166105.15 protein_coding GLB1L3 2 OTTHUMG00000133524.3 +16946 chr11 HAVANA gene 134331874 134378341 7280.0 + 0 ENSG00000149328.14 protein_coding GLB1L2 2 OTTHUMG00000167179.2 +16947 chr11 HAVANA gene 134378504 134411918 11425.0 - 0 ENSG00000109956.12 protein_coding B3GAT1 2 OTTHUMG00000167180.1 +16948 chr11 HAVANA gene 134436473 134505661 8255.0 + 0 ENSG00000255545.7 processed_transcript AP004608.1 2 OTTHUMG00000167181.3 +16949 chr11 HAVANA gene 134563396 134573056 514.0 + 0 ENSG00000254573.1 lincRNA AP004550.1 2 OTTHUMG00000165125.1 +16950 chr11 HAVANA gene 134671426 134672024 389.0 - 0 ENSG00000254989.1 lincRNA AP001999.2 2 OTTHUMG00000167182.1 +16951 chr11 HAVANA gene 134685044 134702004 2259.0 - 0 ENSG00000285640.1 lincRNA AP001999.4 2 OTTHUMG00000192982.1 +16952 chr11 HAVANA gene 134714542 134715922 455.0 + 0 ENSG00000255344.1 lincRNA AP001999.3 1 OTTHUMG00000167183.1 +16953 chr11 HAVANA gene 134735596 134763810 3684.0 + 0 ENSG00000251226.1 lincRNA AP001999.1 1 OTTHUMG00000165126.2 +16954 chr11 HAVANA gene 134950708 134951568 762.0 + 0 ENSG00000255327.1 lincRNA AP003062.1 2 OTTHUMG00000167185.1 +16955 chr11 HAVANA gene 134985683 134986799 1117.0 + 0 ENSG00000279046.1 TEC AP003062.2 2 OTTHUMG00000167187.1 +16956 chr11 HAVANA gene 134994982 135007779 2183.0 - 0 ENSG00000285735.1 lincRNA AP003062.3 2 OTTHUMG00000192753.1 +16957 chr11 HAVANA gene 135061781 135075899 714.0 - 0 ENSG00000255512.1 lincRNA AP005135.1 1 OTTHUMG00000167188.1 +16958 chr12 HAVANA gene 12310 13501 366.0 + 0 ENSG00000256263.1 unprocessed_pseudogene DDX11L8 2 OTTHUMG00000168013.1 +16959 chr12 HAVANA gene 14522 32015 1817.0 - 0 ENSG00000226210.3 unprocessed_pseudogene WASH8P 2 OTTHUMG00000167919.5 +16960 chr12 HAVANA gene 36602 38133 1289.0 - 0 ENSG00000249054.2 lincRNA FAM138D 2 OTTHUMG00000167962.2 +16961 chr12 HAVANA gene 106524 111850 586.0 - 0 ENSG00000256948.1 antisense AC026369.3 2 OTTHUMG00000167976.1 +16962 chr12 HAVANA gene 137411 149169 5439.0 - 0 ENSG00000249695.6 antisense AC026369.1 2 OTTHUMG00000167977.2 +16963 chr12 HAVANA gene 164664 166321 1101.0 - 0 ENSG00000256694.1 antisense AC026369.2 2 OTTHUMG00000167978.1 +16964 chr12 HAVANA gene 66765 178460 7686.0 + 0 ENSG00000120645.11 protein_coding IQSEC3 1 OTTHUMG00000167975.4 +16965 chr12 HAVANA gene 166856 182399 1184.0 - 0 ENSG00000256540.1 lincRNA AC007406.3 2 OTTHUMG00000167979.1 +16966 chr12 HAVANA gene 193036 194130 315.0 + 0 ENSG00000255671.1 antisense AC007406.1 2 OTTHUMG00000168004.1 +16967 chr12 HAVANA gene 203642 205094 765.0 + 0 ENSG00000256577.2 antisense AC007406.4 2 OTTHUMG00000168005.2 +16968 chr12 HAVANA gene 190077 214570 5280.0 - 0 ENSG00000111181.12 protein_coding SLC6A12 2 OTTHUMG00000090309.7 +16969 chr12 HAVANA gene 253442 257299 503.0 - 0 ENSG00000255746.1 sense_intronic AC007406.2 2 OTTHUMG00000168054.1 overlapping_locus +16970 chr12 HAVANA gene 220621 262873 4243.0 - 0 ENSG00000010379.15 protein_coding SLC6A13 2 OTTHUMG00000168053.3 overlapping_locus +16971 chr12 HAVANA gene 273954 277123 3170.0 - 0 ENSG00000261799.1 sense_overlapping AC007406.5 2 OTTHUMG00000172900.1 +16972 chr12 HAVANA gene 280129 389454 12091.0 - 0 ENSG00000073614.12 protein_coding KDM5A 2 OTTHUMG00000168055.2 +16973 chr12 HAVANA gene 389273 442645 3614.0 + 0 ENSG00000120647.9 protein_coding CCDC77 1 OTTHUMG00000129214.3 +16974 chr12 HAVANA gene 460364 563509 6357.0 + 0 ENSG00000139044.11 protein_coding B4GALNT3 1 OTTHUMG00000129283.6 +16975 chr12 HAVANA gene 585865 586486 373.0 - 0 ENSG00000256020.1 sense_intronic AC006205.2 2 OTTHUMG00000168057.1 overlapping_locus +16976 chr12 ENSEMBL gene 589530 589589 60.0 - 0 ENSG00000238370.1 snRNA RNU7-103P 3 +16977 chr12 HAVANA gene 590633 591269 389.0 + 0 ENSG00000255825.1 antisense AC006205.1 2 OTTHUMG00000168058.1 +16978 chr12 HAVANA gene 630891 663706 3530.0 + 0 ENSG00000177406.4 antisense AC021054.1 2 OTTHUMG00000168059.1 +16979 chr12 HAVANA gene 564296 663779 2048.0 - 0 ENSG00000171840.11 protein_coding NINJ2 2 OTTHUMG00000090311.4 ncRNA_host,overlapping_locus +16980 chr12 HAVANA gene 674801 684127 496.0 - 0 ENSG00000256672.1 lincRNA LINC02455 2 OTTHUMG00000168085.1 +16981 chr12 ENSEMBL gene 781133 781258 126.0 + 0 ENSG00000221439.1 snRNA RNU4ATAC16P 3 +16982 chr12 HAVANA gene 865288 867139 1161.0 - 0 ENSG00000285704.1 antisense AC004765.1 2 OTTHUMG00000193160.1 +16983 chr12 HAVANA gene 752593 911452 14370.0 + 0 ENSG00000060237.16 protein_coding WNK1 1 OTTHUMG00000090321.5 ncRNA_host +16984 chr12 HAVANA gene 912077 990053 4190.0 - 0 ENSG00000002016.17 protein_coding RAD52 2 OTTHUMG00000090361.5 overlapping_locus +16985 chr12 HAVANA gene 974133 991190 3669.0 - 0 ENSG00000250132.6 antisense AC004803.1 2 OTTHUMG00000185787.1 overlapping_locus +16986 chr12 HAVANA gene 1151810 1153059 888.0 - 0 ENSG00000275811.1 processed_pseudogene HTR1DP1 2 OTTHUMG00000187789.1 +16987 chr12 HAVANA gene 1385833 1386987 574.0 + 0 ENSG00000267285.1 sense_intronic AC004672.2 2 OTTHUMG00000181960.1 overlapping_locus +16988 chr12 HAVANA gene 1380060 1391502 2088.0 - 0 ENSG00000249028.2 antisense AC004672.1 2 OTTHUMG00000168150.1 +16989 chr12 HAVANA gene 990509 1495933 13484.0 + 0 ENSG00000082805.19 protein_coding ERC1 1 OTTHUMG00000130138.13 overlapping_locus +16990 chr12 HAVANA gene 1500525 1504424 2210.0 + 0 ENSG00000249628.3 lincRNA LINC00942 2 OTTHUMG00000168151.2 +16991 chr12 HAVANA gene 1565993 1594165 2287.0 - 0 ENSG00000171823.6 protein_coding FBXL14 2 OTTHUMG00000090369.3 +16992 chr12 HAVANA gene 1529891 1647243 4305.0 + 0 ENSG00000111186.12 protein_coding WNT5B 1 OTTHUMG00000090375.3 +16993 chr12 ENSEMBL gene 1660315 1660380 66.0 - 0 ENSG00000266043.1 miRNA MIR3649 3 +16994 chr12 HAVANA gene 1695830 1698044 1979.0 - 0 ENSG00000271500.1 processed_pseudogene AC005183.1 1 OTTHUMG00000184716.1 pseudo_consens +16995 chr12 HAVANA gene 1741197 1747099 3470.0 - 0 ENSG00000285627.1 antisense AC005343.1 2 OTTHUMG00000193299.1 +16996 chr12 HAVANA gene 1757231 1758011 781.0 - 0 ENSG00000243663.1 processed_pseudogene RPS4XP14 1 OTTHUMG00000157376.1 pseudo_consens +16997 chr12 HAVANA gene 1688574 1788678 5878.0 + 0 ENSG00000006831.9 protein_coding ADIPOR2 1 OTTHUMG00000130139.2 +16998 chr12 HAVANA gene 1820267 1836752 4277.0 + 0 ENSG00000166159.10 protein_coding LRTM2 2 OTTHUMG00000168088.3 +16999 chr12 HAVANA gene 1791957 1918836 7639.0 - 0 ENSG00000151062.14 protein_coding CACNA2D4 2 OTTHUMG00000168111.5 +17000 chr12 HAVANA gene 1917951 1922867 315.0 + 0 ENSG00000256706.1 antisense AC005342.2 2 OTTHUMG00000168135.1 +17001 chr12 HAVANA gene 1929202 1936574 2350.0 - 0 ENSG00000235049.1 lincRNA LINC00940 2 OTTHUMG00000168112.1 +17002 chr12 HAVANA gene 1946054 2004535 4609.0 - 0 ENSG00000151065.13 protein_coding DCP1B 1 OTTHUMG00000168113.3 +17003 chr12 HAVANA gene 2004666 2011392 629.0 + 0 ENSG00000203593.3 antisense AC005342.1 2 OTTHUMG00000168336.1 overlapping_locus +17004 chr12 HAVANA gene 2018213 2020532 687.0 + 0 ENSG00000256837.1 sense_intronic CACNA1C-IT1 2 OTTHUMG00000168337.1 overlapping_locus +17005 chr12 HAVANA gene 2048352 2049463 589.0 + 0 ENSG00000256257.1 sense_intronic CACNA1C-IT2 2 OTTHUMG00000168338.1 overlapping_locus +17006 chr12 HAVANA gene 2217462 2217920 459.0 - 0 ENSG00000278255.1 antisense AC005344.1 2 OTTHUMG00000188146.1 +17007 chr12 HAVANA gene 2220537 2223479 735.0 - 0 ENSG00000256025.1 antisense CACNA1C-AS4 2 OTTHUMG00000168136.1 +17008 chr12 HAVANA gene 2269776 2288937 622.0 + 0 ENSG00000256721.1 sense_intronic CACNA1C-IT3 2 OTTHUMG00000168201.1 overlapping_locus +17009 chr12 HAVANA gene 2332861 2335702 1546.0 - 0 ENSG00000285555.1 antisense AC005293.1 2 OTTHUMG00000193273.1 +17010 chr12 HAVANA gene 2440189 2457392 3191.0 - 0 ENSG00000285734.1 antisense AC005414.1 2 OTTHUMG00000192786.1 +17011 chr12 HAVANA gene 2603350 2607440 444.0 - 0 ENSG00000256769.1 antisense CACNA1C-AS3 2 OTTHUMG00000168137.1 +17012 chr12 HAVANA gene 2659937 2660969 732.0 + 0 ENSG00000203648.3 processed_pseudogene AC007618.1 1 OTTHUMG00000150244.2 pseudo_consens,overlapping_locus +17013 chr12 HAVANA gene 2668500 2672220 609.0 - 0 ENSG00000256271.1 antisense CACNA1C-AS2 2 OTTHUMG00000168138.1 +17014 chr12 HAVANA gene 2676001 2691200 2639.0 - 0 ENSG00000246627.6 antisense CACNA1C-AS1 2 OTTHUMG00000168139.1 +17015 chr12 HAVANA gene 1970786 2697950 19103.0 + 0 ENSG00000151067.21 protein_coding CACNA1C 2 OTTHUMG00000150243.11 overlapping_locus +17016 chr12 HAVANA gene 2726400 2727050 651.0 - 0 ENSG00000283587.1 processed_pseudogene AC092471.2 2 OTTHUMG00000191737.1 overlapping_locus +17017 chr12 HAVANA gene 2740093 2742855 567.0 + 0 ENSG00000274659.1 lincRNA LINC02371 2 OTTHUMG00000187093.1 +17018 chr12 HAVANA gene 2752597 2753132 536.0 - 0 ENSG00000256902.1 processed_pseudogene IQSEC3P1 2 OTTHUMG00000168141.1 overlapping_locus +17019 chr12 HAVANA gene 2761200 2775658 1023.0 - 0 ENSG00000255669.2 transcribed_unitary_pseudogene ITFG2-AS1 2 OTTHUMG00000168142.4 overlapping_locus +17020 chr12 HAVANA gene 2781904 2782371 468.0 + 0 ENSG00000224438.3 processed_pseudogene RPL23AP14 1 OTTHUMG00000157381.1 pseudo_consens +17021 chr12 HAVANA gene 2786931 2794295 653.0 - 0 ENSG00000256030.1 transcribed_processed_pseudogene CBX3P4 1 OTTHUMG00000168104.1 pseudo_consens,overlapping_locus +17022 chr12 HAVANA gene 2797136 2803938 287.0 - 0 ENSG00000258092.1 antisense AC005841.1 2 OTTHUMG00000169390.1 overlapping_locus +17023 chr12 HAVANA gene 2794953 2805423 5180.0 + 0 ENSG00000004478.7 protein_coding FKBP4 2 OTTHUMG00000090429.3 +17024 chr12 HAVANA gene 2695765 2812902 1537.0 - 0 ENSG00000256150.2 processed_transcript AC092471.1 2 OTTHUMG00000168140.3 overlapping_locus +17025 chr12 HAVANA gene 2796877 2812902 761.0 - 0 ENSG00000258325.2 antisense ITFG2-AS1 2 OTTHUMG00000169389.2 overlapping_locus +17026 chr12 HAVANA gene 2825348 2835544 2803.0 - 0 ENSG00000053702.14 protein_coding NRIP2 2 OTTHUMG00000130616.5 +17027 chr12 HAVANA gene 2849039 2857083 1167.0 - 0 ENSG00000283297.1 protein_coding TEX52 2 OTTHUMG00000191716.1 +17028 chr12 HAVANA gene 2812622 2859791 6250.0 + 0 ENSG00000111203.12 protein_coding ITFG2 2 OTTHUMG00000130617.4 +17029 chr12 HAVANA gene 2857681 2877155 4899.0 - 0 ENSG00000111206.12 protein_coding FOXM1 2 OTTHUMG00000168118.2 +17030 chr12 HAVANA gene 2885819 2886329 456.0 + 0 ENSG00000278356.1 sense_intronic AC005911.1 2 OTTHUMG00000187094.1 overlapping_locus +17031 chr12 HAVANA gene 2876258 2889523 2643.0 + 0 ENSG00000171792.10 protein_coding RHNO1 1 OTTHUMG00000158557.3 overlapping_locus +17032 chr12 HAVANA gene 2877223 2941140 3181.0 + 0 ENSG00000078246.16 protein_coding TULP3 1 OTTHUMG00000168152.2 overlapping_locus +17033 chr12 ENSEMBL gene 2954240 2954338 99.0 - 0 ENSG00000252996.1 snRNA RNU6-1315P 3 +17034 chr12 HAVANA gene 2959330 3040673 2272.0 + 0 ENSG00000197905.8 protein_coding TEAD4 2 OTTHUMG00000168153.2 +17035 chr12 HAVANA gene 3041437 3044950 3514.0 + 0 ENSG00000250899.3 lincRNA AC125807.2 2 OTTHUMG00000168179.2 +17036 chr12 HAVANA gene 3071532 3072145 614.0 - 0 ENSG00000234589.4 processed_pseudogene AC125807.1 1 OTTHUMG00000157386.1 pseudo_consens +17037 chr12 ENSEMBL gene 3124777 3125063 287.0 + 0 ENSG00000278469.1 misc_RNA RF00017 3 +17038 chr12 HAVANA gene 3149797 3151476 562.0 + 0 ENSG00000256197.1 sense_intronic TSPAN9-IT1 2 OTTHUMG00000168180.1 overlapping_locus +17039 chr12 HAVANA gene 3171657 3174056 2400.0 + 0 ENSG00000275850.1 sense_intronic AC005912.2 2 OTTHUMG00000187095.1 overlapping_locus +17040 chr12 HAVANA gene 3211663 3211917 255.0 - 0 ENSG00000227081.5 processed_pseudogene AC005912.1 2 OTTHUMG00000157388.2 +17041 chr12 HAVANA gene 3077355 3286564 6905.0 + 0 ENSG00000011105.13 protein_coding TSPAN9 2 OTTHUMG00000150333.6 ncRNA_host,overlapping_locus +17042 chr12 HAVANA gene 3318718 3325343 3004.0 + 0 ENSG00000236908.2 lincRNA AC005865.1 2 OTTHUMG00000168182.1 +17043 chr12 HAVANA gene 3296202 3366122 5981.0 - 0 ENSG00000250770.3 transcribed_unprocessed_pseudogene AC005865.2 2 OTTHUMG00000168181.2 +17044 chr12 HAVANA gene 3367833 3371346 515.0 + 0 ENSG00000257048.1 lincRNA LINC02417 2 OTTHUMG00000168183.1 +17045 chr12 HAVANA gene 3462718 3463586 530.0 - 0 ENSG00000256691.1 antisense AC005908.2 2 OTTHUMG00000168184.1 +17046 chr12 HAVANA gene 3468950 3469296 347.0 + 0 ENSG00000243507.1 processed_pseudogene AC005908.1 1 OTTHUMG00000157395.1 pseudo_consens,overlapping_locus +17047 chr12 HAVANA gene 3381349 3593973 6644.0 + 0 ENSG00000111218.11 protein_coding PRMT8 2 OTTHUMG00000128493.5 overlapping_locus +17048 chr12 HAVANA gene 3610307 3612003 1697.0 - 0 ENSG00000280202.1 TEC AC005831.1 2 OTTHUMG00000165347.2 overlapping_locus +17049 chr12 ENSEMBL gene 3726222 3726327 106.0 - 0 ENSG00000222338.1 snRNA RNU6-174P 3 +17050 chr12 HAVANA gene 3752518 3757842 713.0 + 0 ENSG00000283138.1 antisense AC006207.1 2 OTTHUMG00000191673.1 +17051 chr12 HAVANA gene 3606633 3764819 12466.0 - 0 ENSG00000130038.9 protein_coding CRACR2A 2 OTTHUMG00000168185.2 ncRNA_host,overlapping_locus +17052 chr12 HAVANA gene 3839459 3842525 3067.0 + 0 ENSG00000118976.5 processed_pseudogene OTUD4P1 1 OTTHUMG00000168119.1 pseudo_consens +17053 chr12 HAVANA gene 3791047 3873448 6200.0 - 0 ENSG00000111224.13 protein_coding PARP11 2 OTTHUMG00000156442.5 +17054 chr12 HAVANA gene 3871584 3910338 1780.0 + 0 ENSG00000256862.2 antisense AC005842.1 2 OTTHUMG00000168120.2 +17055 chr12 HAVANA gene 4020977 4026658 588.0 + 0 ENSG00000256969.1 lincRNA AC007207.2 2 OTTHUMG00000168121.1 +17056 chr12 HAVANA gene 4097451 4099519 2069.0 + 0 ENSG00000256356.1 processed_pseudogene HSPA8P5 1 OTTHUMG00000168122.1 pseudo_consens +17057 chr12 HAVANA gene 4109661 4118132 865.0 - 0 ENSG00000242444.3 transcribed_processed_pseudogene AC007207.1 1 OTTHUMG00000157406.3 pseudo_consens +17058 chr12 HAVANA gene 4248765 4276184 3545.0 - 0 ENSG00000255920.2 processed_transcript CCND2-AS1 2 OTTHUMG00000168320.2 overlapping_locus +17059 chr12 HAVANA gene 4273772 4305350 7157.0 + 0 ENSG00000118971.7 protein_coding CCND2 1 OTTHUMG00000168123.3 overlapping_locus +17060 chr12 HAVANA gene 4323724 4324811 992.0 - 0 ENSG00000213970.4 transcribed_processed_pseudogene AC006122.1 1 OTTHUMG00000157415.2 pseudo_consens +17061 chr12 HAVANA gene 4307763 4354593 4017.0 + 0 ENSG00000078237.6 protein_coding TIGAR 2 OTTHUMG00000168124.4 overlapping_locus +17062 chr12 HAVANA gene 4368227 4379728 3018.0 - 0 ENSG00000118972.2 protein_coding FGF23 2 OTTHUMG00000168241.2 +17063 chr12 HAVANA gene 4273762 4405490 3435.0 + 0 ENSG00000285901.1 protein_coding AC008012.1 2 OTTHUMG00000193358.1 overlapping_locus +17064 chr12 HAVANA gene 4428155 4445614 1209.0 - 0 ENSG00000111241.2 protein_coding FGF6 1 OTTHUMG00000168242.1 +17065 chr12 HAVANA gene 4487728 4538508 4939.0 - 0 ENSG00000047621.11 protein_coding C12orf4 2 OTTHUMG00000168258.5 +17066 chr12 HAVANA gene 4538798 4560048 2558.0 + 0 ENSG00000111247.14 protein_coding RAD51AP1 1 OTTHUMG00000168125.5 +17067 chr12 HAVANA gene 4601991 4603420 1430.0 - 0 ENSG00000256748.1 processed_pseudogene AC005832.2 1 OTTHUMG00000168321.1 pseudo_consens +17068 chr12 HAVANA gene 4562204 4615302 7054.0 + 0 ENSG00000010219.13 protein_coding DYRK4 2 OTTHUMG00000168204.5 overlapping_locus +17069 chr12 HAVANA gene 4635349 4636140 631.0 - 0 ENSG00000256799.1 processed_pseudogene AC005832.3 1 OTTHUMG00000168227.1 pseudo_consens,overlapping_locus +17070 chr12 HAVANA gene 4645496 4648027 572.0 + 0 ENSG00000256381.1 sense_intronic AC005832.1 2 OTTHUMG00000168223.1 overlapping_locus +17071 chr12 HAVANA gene 4615508 4649047 3668.0 - 0 ENSG00000111254.7 protein_coding AKAP3 1 OTTHUMG00000168226.3 overlapping_locus +17072 chr12 HAVANA gene 4604944 4662643 818.0 + 0 ENSG00000272921.1 protein_coding AC005832.4 2 OTTHUMG00000186348.1 overlapping_locus +17073 chr12 HAVANA gene 4649095 4694317 10391.0 + 0 ENSG00000139180.10 protein_coding NDUFA9 1 OTTHUMG00000168224.6 overlapping_locus +17074 chr12 HAVANA gene 4700417 4720102 1249.0 - 0 ENSG00000255474.1 lincRNA GAU1 1 OTTHUMG00000166187.1 +17075 chr12 HAVANA gene 4649101 4774184 3961.0 + 0 ENSG00000255639.3 protein_coding AC005833.1 2 OTTHUMG00000168352.4 overlapping_locus +17076 chr12 HAVANA gene 4806542 4808641 449.0 - 0 ENSG00000256988.1 lincRNA AC005833.2 2 OTTHUMG00000168228.1 +17077 chr12 HAVANA gene 4809176 4813412 4237.0 + 0 ENSG00000151079.7 protein_coding KCNA6 2 OTTHUMG00000168225.1 overlapping_locus +17078 chr12 HAVANA gene 4838955 4842675 560.0 + 0 ENSG00000255608.1 sense_intronic AC006063.1 2 OTTHUMG00000168229.1 overlapping_locus +17079 chr12 HAVANA gene 4720341 4851927 9208.0 + 0 ENSG00000130035.7 protein_coding GALNT8 1 OTTHUMG00000166188.5 overlapping_locus +17080 chr12 HAVANA gene 4909905 4918256 7985.0 + 0 ENSG00000111262.6 protein_coding KCNA1 2 OTTHUMG00000044398.5 overlapping_locus +17081 chr12 HAVANA gene 4960113 4963450 1696.0 + 0 ENSG00000284513.1 lincRNA AC006063.2 2 OTTHUMG00000192205.1 +17082 chr12 HAVANA gene 4909867 5026012 9655.0 + 0 ENSG00000256654.3 processed_transcript AC005906.2 2 OTTHUMG00000192202.2 overlapping_locus +17083 chr12 HAVANA gene 5032388 5032941 554.0 - 0 ENSG00000255996.1 processed_pseudogene AC005906.1 1 OTTHUMG00000168231.1 pseudo_consens +17084 chr12 HAVANA gene 5043989 5046788 2800.0 + 0 ENSG00000130037.4 protein_coding KCNA5 2 OTTHUMG00000168232.2 +17085 chr12 HAVANA gene 5088002 5092742 2908.0 + 0 ENSG00000285523.1 lincRNA AC005906.3 2 OTTHUMG00000192989.1 +17086 chr12 HAVANA gene 5233997 5243151 1393.0 - 0 ENSG00000256115.5 lincRNA LINC02443 1 OTTHUMG00000168644.1 +17087 chr12 HAVANA gene 5315961 5319347 3387.0 + 0 ENSG00000256146.1 lincRNA AC006206.1 2 OTTHUMG00000168646.1 overlapping_locus +17088 chr12 HAVANA gene 5366048 5367774 1727.0 - 0 ENSG00000256218.1 lincRNA AC007848.2 2 OTTHUMG00000168647.1 +17089 chr12 HAVANA gene 5290480 5383653 1604.0 + 0 ENSG00000256417.1 lincRNA AC006206.2 2 OTTHUMG00000168645.1 overlapping_locus +17090 chr12 HAVANA gene 5388589 5406651 1405.0 + 0 ENSG00000255983.1 lincRNA AC007848.1 2 OTTHUMG00000168648.1 +17091 chr12 HAVANA gene 5432112 5521536 2919.0 + 0 ENSG00000185652.11 protein_coding NTF3 1 OTTHUMG00000168649.2 +17092 chr12 HAVANA gene 5583797 5584085 289.0 + 0 ENSG00000255973.1 processed_pseudogene AC137627.1 1 OTTHUMG00000168650.1 pseudo_consens +17093 chr12 HAVANA gene 5531869 5946232 6255.0 - 0 ENSG00000047617.14 protein_coding ANO2 1 OTTHUMG00000168264.6 +17094 chr12 ENSEMBL gene 6095699 6095970 272.0 - 0 ENSG00000240533.3 misc_RNA RN7SL69P 3 +17095 chr12 HAVANA gene 5948874 6124770 10391.0 - 0 ENSG00000110799.13 protein_coding VWF 2 OTTHUMG00000168265.4 ncRNA_host +17096 chr12 HAVANA gene 6155035 6160719 653.0 - 0 ENSG00000255775.1 lincRNA AC005845.1 1 OTTHUMG00000168657.1 +17097 chr12 ENSEMBL gene 6234345 6234455 111.0 - 0 ENSG00000202318.1 misc_RNA RF00019 3 +17098 chr12 HAVANA gene 6199715 6238271 3299.0 + 0 ENSG00000010278.13 protein_coding CD9 1 OTTHUMG00000044400.13 +17099 chr12 HAVANA gene 6270168 6270425 258.0 - 0 ENSG00000256103.2 processed_pseudogene ATP5MFP5 1 OTTHUMG00000168354.1 pseudo_consens +17100 chr12 HAVANA gene 6310436 6328506 4260.0 + 0 ENSG00000008323.15 protein_coding PLEKHG6 2 OTTHUMG00000168266.1 +17101 chr12 HAVANA gene 6328757 6342114 4005.0 - 0 ENSG00000067182.7 protein_coding TNFRSF1A 1 OTTHUMG00000168267.3 +17102 chr12 ENSEMBL gene 6344554 6344837 284.0 + 0 ENSG00000265388.2 misc_RNA RN7SL391P 3 +17103 chr12 HAVANA gene 6346843 6377730 5876.0 - 0 ENSG00000111319.12 protein_coding SCNN1A 1 OTTHUMG00000168268.2 +17104 chr12 HAVANA gene 6375045 6391571 6280.0 + 0 ENSG00000111321.10 protein_coding LTBR 1 OTTHUMG00000168356.3 +17105 chr12 HAVANA gene 6393905 6396148 1803.0 + 0 ENSG00000256433.2 lincRNA AC005840.2 2 OTTHUMG00000168357.2 +17106 chr12 HAVANA gene 6409637 6410013 377.0 - 0 ENSG00000213942.3 processed_pseudogene AC005840.1 1 OTTHUMG00000157418.1 pseudo_consens +17107 chr12 HAVANA gene 6438498 6438852 355.0 + 0 ENSG00000224906.3 processed_pseudogene SRP14P1 1 OTTHUMG00000169121.1 pseudo_consens +17108 chr12 HAVANA gene 6439001 6451567 3411.0 - 0 ENSG00000215039.6 processed_transcript CD27-AS1 2 OTTHUMG00000168315.2 +17109 chr12 HAVANA gene 6444867 6451718 1410.0 + 0 ENSG00000139193.3 protein_coding CD27 2 OTTHUMG00000168316.1 overlapping_locus +17110 chr12 HAVANA gene 6451690 6466517 3188.0 + 0 ENSG00000139192.11 protein_coding TAPBPL 1 OTTHUMG00000168317.1 overlapping_locus +17111 chr12 HAVANA gene 6466537 6467135 599.0 + 0 ENSG00000276718.1 antisense AC005840.4 2 OTTHUMG00000187110.1 +17112 chr12 HAVANA gene 6462237 6470987 3580.0 - 0 ENSG00000139190.16 protein_coding VAMP1 1 OTTHUMG00000168269.2 +17113 chr12 HAVANA gene 6477714 6480207 2494.0 + 0 ENSG00000256913.1 processed_pseudogene AC005840.3 1 OTTHUMG00000168358.1 pseudo_consens +17114 chr12 HAVANA gene 6491886 6493841 1551.0 - 0 ENSG00000111639.7 protein_coding MRPL51 1 OTTHUMG00000168512.4 +17115 chr12 HAVANA gene 6510275 6510522 248.0 + 0 ENSG00000276232.1 sense_intronic AC006064.5 2 OTTHUMG00000169160.1 overlapping_locus +17116 chr12 ENSEMBL gene 6510222 6510551 330.0 + 0 ENSG00000239002.3 snoRNA SCARNA10 3 +17117 chr12 HAVANA gene 6493356 6531955 6487.0 + 0 ENSG00000010292.12 protein_coding NCAPD2 1 OTTHUMG00000168513.2 ncRNA_host,overlapping_locus +17118 chr12 HAVANA gene 6532290 6533498 477.0 - 0 ENSG00000255966.1 antisense AC006064.3 2 OTTHUMG00000169161.1 +17119 chr12 HAVANA gene 6537794 6538370 422.0 - 0 ENSG00000269968.1 antisense AC006064.4 2 OTTHUMG00000183895.1 +17120 chr12 HAVANA gene 6533927 6538374 2981.0 + 0 ENSG00000111640.14 protein_coding GAPDH 2 OTTHUMG00000137379.2 +17121 chr12 HAVANA gene 6543504 6544931 560.0 + 0 ENSG00000245667.2 antisense AC006064.1 2 OTTHUMG00000169162.1 +17122 chr12 HAVANA gene 6538375 6556083 5203.0 - 0 ENSG00000010295.19 protein_coding IFFO1 2 OTTHUMG00000141264.3 +17123 chr12 HAVANA gene 6556863 6568691 4687.0 - 0 ENSG00000111641.11 protein_coding NOP2 1 OTTHUMG00000169163.2 overlapping_locus +17124 chr12 ENSEMBL gene 6581474 6581609 136.0 - 0 ENSG00000251898.1 scaRNA SCARNA11 3 +17125 chr12 HAVANA gene 6578622 6584739 2196.0 + 0 ENSG00000247853.2 antisense AC006064.2 2 OTTHUMG00000169165.1 +17126 chr12 HAVANA gene 6556886 6607367 8514.0 - 0 ENSG00000285238.2 protein_coding AC006064.6 2 OTTHUMG00000192596.2 ncRNA_host,overlapping_locus +17127 chr12 HAVANA gene 6570082 6614524 12713.0 - 0 ENSG00000111642.15 protein_coding CHD4 2 OTTHUMG00000169164.12 ncRNA_host,overlapping_locus +17128 chr12 HAVANA gene 6618835 6636447 3258.0 - 0 ENSG00000184574.9 protein_coding LPAR5 2 OTTHUMG00000168713.1 +17129 chr12 HAVANA gene 6638075 6647460 2843.0 - 0 ENSG00000111644.7 protein_coding ACRBP 1 OTTHUMG00000168715.2 +17130 chr12 HAVANA gene 6650280 6663148 2736.0 - 0 ENSG00000111653.19 protein_coding ING4 2 OTTHUMG00000141274.6 +17131 chr12 HAVANA gene 6663260 6672069 2399.0 + 0 ENSG00000219410.6 bidirectional_promoter_lncRNA AC125494.1 2 OTTHUMG00000169194.3 +17132 chr12 HAVANA gene 6666477 6689572 5181.0 - 0 ENSG00000126746.17 protein_coding ZNF384 1 OTTHUMG00000168716.5 +17133 chr12 HAVANA gene 6693792 6700800 3266.0 - 0 ENSG00000139200.13 protein_coding PIANP 2 OTTHUMG00000168664.3 +17134 chr12 ENSEMBL gene 6709452 6709552 101.0 + 0 ENSG00000252186.1 snRNA RNU6-781P 3 +17135 chr12 HAVANA gene 6723233 6723687 455.0 + 0 ENSG00000270068.1 antisense AC125494.3 2 OTTHUMG00000183940.1 +17136 chr12 HAVANA gene 6723741 6731875 3113.0 + 0 ENSG00000111652.9 protein_coding COPS7A 1 OTTHUMG00000169182.3 +17137 chr12 HAVANA gene 6742985 6743641 657.0 + 0 ENSG00000269892.1 lincRNA AC125494.2 2 OTTHUMG00000183941.1 +17138 chr12 HAVANA gene 6747996 6767475 3781.0 - 0 ENSG00000089693.10 protein_coding MLF2 2 OTTHUMG00000168717.5 +17139 chr12 HAVANA gene 6765516 6770952 1475.0 + 0 ENSG00000159335.15 protein_coding PTMS 2 OTTHUMG00000169196.4 +17140 chr12 HAVANA gene 6772512 6778455 3056.0 + 0 ENSG00000089692.8 protein_coding LAG3 2 OTTHUMG00000169197.1 +17141 chr12 ENSEMBL gene 6783854 6784161 308.0 - 0 ENSG00000244532.1 misc_RNA RN7SL380P 3 +17142 chr12 HAVANA gene 6786858 6820808 4583.0 + 0 ENSG00000010610.9 protein_coding CD4 1 OTTHUMG00000168514.2 +17143 chr12 HAVANA gene 6821545 6829972 3295.0 + 0 ENSG00000250510.7 protein_coding GPR162 1 OTTHUMG00000168368.4 overlapping_locus +17144 chr12 HAVANA gene 6828410 6839851 4601.0 + 0 ENSG00000110811.19 protein_coding P3H3 2 OTTHUMG00000168516.5 overlapping_locus +17145 chr12 HAVANA gene 6839954 6847393 3437.0 + 0 ENSG00000111664.10 protein_coding GNB3 2 OTTHUMG00000168517.4 +17146 chr12 HAVANA gene 6844793 6852066 5653.0 - 0 ENSG00000111665.11 protein_coding CDCA3 1 OTTHUMG00000169014.2 +17147 chr12 HAVANA gene 6852128 6866632 3738.0 + 0 ENSG00000111667.13 protein_coding USP5 2 OTTHUMG00000169233.2 +17148 chr12 HAVANA gene 6867119 6870948 2700.0 + 0 ENSG00000111669.14 protein_coding TPI1 2 OTTHUMG00000133767.4 +17149 chr12 HAVANA gene 6873389 6884741 1783.0 + 0 ENSG00000240370.6 transcribed_processed_pseudogene RPL13P5 1 OTTHUMG00000156667.2 pseudo_consens,overlapping_locus +17150 chr12 HAVANA gene 6884682 6885786 1105.0 + 0 ENSG00000248593.3 transcribed_unprocessed_pseudogene DSTNP2 1 OTTHUMG00000156666.3 pseudo_consens,overlapping_locus +17151 chr12 HAVANA gene 6870935 6889358 2452.0 - 0 ENSG00000111671.9 protein_coding SPSB2 2 OTTHUMG00000156665.4 +17152 chr12 HAVANA gene 6899752 6900212 461.0 + 0 ENSG00000275703.1 lincRNA U47924.3 2 OTTHUMG00000187114.1 overlapping_locus +17153 chr12 HAVANA gene 6873569 6914243 3054.0 + 0 ENSG00000010626.14 protein_coding LRRC23 1 OTTHUMG00000156668.4 overlapping_locus +17154 chr12 HAVANA gene 6913745 6923698 4281.0 + 0 ENSG00000111674.8 protein_coding ENO2 1 OTTHUMG00000168967.3 overlapping_locus +17155 chr12 HAVANA gene 6924463 6942321 4762.0 + 0 ENSG00000111676.14 protein_coding ATN1 2 OTTHUMG00000169015.3 +17156 chr12 ENSEMBL gene 6943816 6943878 63.0 + 0 ENSG00000238923.1 snRNA RNU7-1 3 +17157 chr12 HAVANA gene 6943508 6944604 1097.0 - 0 ENSG00000272173.1 antisense U47924.2 2 OTTHUMG00000185702.1 +17158 chr12 HAVANA gene 6942978 6946003 1806.0 + 0 ENSG00000111678.10 protein_coding C12orf57 1 OTTHUMG00000169017.3 ncRNA_host +17159 chr12 HAVANA gene 6946468 6961316 5009.0 + 0 ENSG00000111679.16 protein_coding PTPN6 1 OTTHUMG00000168518.3 +17160 chr12 ENSEMBL gene 6963699 6963766 68.0 + 0 ENSG00000207713.3 miRNA MIR200C 3 +17161 chr12 ENSEMBL gene 6964097 6964191 95.0 + 0 ENSG00000207708.1 miRNA MIR141 3 +17162 chr12 HAVANA gene 6963246 6964447 350.0 + 0 ENSG00000257084.1 lincRNA MIR200CHG 1 OTTHUMG00000169234.1 ncRNA_host,overlapping_locus +17163 chr12 HAVANA gene 6964949 6965382 434.0 + 0 ENSG00000271969.1 antisense U47924.1 2 OTTHUMG00000185704.1 overlapping_locus +17164 chr12 ENSEMBL gene 6967337 6967606 270.0 - 0 ENSG00000238795.1 snoRNA SCARNA12 3 +17165 chr12 HAVANA gene 6965327 6970825 2499.0 - 0 ENSG00000215021.8 protein_coding PHB2 1 OTTHUMG00000168519.4 ncRNA_host +17166 chr12 HAVANA gene 6970893 6997428 6268.0 + 0 ENSG00000126749.15 protein_coding EMG1 2 OTTHUMG00000188247.2 overlapping_locus +17167 chr12 HAVANA gene 6976186 7018510 4725.0 - 0 ENSG00000111684.10 protein_coding LPCAT3 2 OTTHUMG00000168970.2 +17168 chr12 HAVANA gene 7032108 7032398 291.0 + 0 ENSG00000239701.1 processed_pseudogene AC006512.1 1 OTTHUMG00000157428.1 pseudo_consens,overlapping_locus +17169 chr12 HAVANA gene 7041156 7041641 486.0 - 0 ENSG00000257078.1 processed_pseudogene AC006512.2 2 OTTHUMG00000169235.1 +17170 chr12 HAVANA gene 6988259 7071032 6462.0 + 0 ENSG00000182326.14 protein_coding C1S 1 OTTHUMG00000150305.4 overlapping_locus +17171 chr12 HAVANA gene 7080199 7092607 5885.0 - 0 ENSG00000159403.16 protein_coding C1R 1 OTTHUMG00000168149.9 overlapping_locus +17172 chr12 HAVANA gene 7089587 7109273 5014.0 - 0 ENSG00000139178.10 protein_coding C1RL 1 OTTHUMG00000168144.3 overlapping_locus +17173 chr12 HAVANA gene 7115736 7116486 751.0 - 0 ENSG00000276144.1 lincRNA AC233309.1 2 OTTHUMG00000187115.1 +17174 chr12 ENSEMBL gene 7118785 7118891 107.0 + 0 ENSG00000200345.2 snRNA RNU6-485P 3 +17175 chr12 HAVANA gene 7108052 7122501 6094.0 + 0 ENSG00000205885.7 antisense C1RL-AS1 1 OTTHUMG00000168164.1 ncRNA_host +17176 chr12 HAVANA gene 7123684 7128942 1369.0 - 0 ENSG00000139194.7 protein_coding RBP5 2 OTTHUMG00000168165.1 +17177 chr12 HAVANA gene 7129079 7131198 1179.0 - 0 ENSG00000256967.1 antisense AC018653.3 1 OTTHUMG00000168166.1 +17178 chr12 HAVANA gene 7146482 7147817 724.0 - 0 ENSG00000285770.1 antisense AC018653.4 2 OTTHUMG00000192701.1 +17179 chr12 HAVANA gene 7129698 7158945 6865.0 + 0 ENSG00000139182.14 protein_coding CLSTN3 1 OTTHUMG00000168167.4 +17180 chr12 HAVANA gene 7166674 7189069 651.0 - 0 ENSG00000255572.1 antisense AC018653.1 1 OTTHUMG00000168174.1 +17181 chr12 HAVANA gene 7188685 7218574 5488.0 + 0 ENSG00000139197.10 protein_coding PEX5 2 OTTHUMG00000168175.5 +17182 chr12 HAVANA gene 7237432 7240986 238.0 + 0 ENSG00000256480.1 processed_pseudogene AC018653.2 2 OTTHUMG00000168324.1 +17183 chr12 HAVANA gene 7304284 7328724 2477.0 + 0 ENSG00000215009.5 protein_coding ACSM4 1 OTTHUMG00000154975.3 +17184 chr12 HAVANA gene 7438780 7439990 1211.0 - 0 ENSG00000255836.1 processed_pseudogene AC131206.1 1 OTTHUMG00000168326.1 pseudo_consens,overlapping_locus +17185 chr12 HAVANA gene 7346685 7479897 5690.0 - 0 ENSG00000177675.8 protein_coding CD163L1 1 OTTHUMG00000168325.3 overlapping_locus +17186 chr12 HAVANA gene 7470813 7503893 5813.0 - 0 ENSG00000177575.12 protein_coding CD163 1 OTTHUMG00000168353.2 overlapping_locus +17187 chr12 HAVANA gene 7566369 7567382 1014.0 + 0 ENSG00000235868.3 processed_pseudogene GAPDHP31 1 OTTHUMG00000160000.1 pseudo_consens +17188 chr12 HAVANA gene 7604350 7605214 865.0 - 0 ENSG00000256331.1 processed_pseudogene NIFKP3 1 OTTHUMG00000168431.1 pseudo_consens +17189 chr12 HAVANA gene 7606834 7607331 498.0 + 0 ENSG00000255977.1 processed_pseudogene AC006927.1 1 OTTHUMG00000168432.1 pseudo_consens +17190 chr12 HAVANA gene 7619872 7620260 389.0 - 0 ENSG00000284327.1 processed_pseudogene AC006927.2 2 OTTHUMG00000191904.1 +17191 chr12 HAVANA gene 7620542 7621450 543.0 + 0 ENSG00000284591.1 processed_pseudogene AC006927.4 2 OTTHUMG00000191905.1 +17192 chr12 HAVANA gene 7626103 7626486 384.0 + 0 ENSG00000284522.1 processed_pseudogene AC006927.3 2 OTTHUMG00000191906.1 +17193 chr12 HAVANA gene 7637396 7647086 714.0 - 0 ENSG00000285142.1 unprocessed_pseudogene AC006927.5 2 OTTHUMG00000192546.1 +17194 chr12 HAVANA gene 7649400 7665903 889.0 - 0 ENSG00000111701.6 protein_coding APOBEC1 2 OTTHUMG00000141288.3 +17195 chr12 HAVANA gene 7689782 7695776 1239.0 - 0 ENSG00000184344.3 protein_coding GDF3 2 OTTHUMG00000168433.1 +17196 chr12 HAVANA gene 7711454 7717559 1079.0 + 0 ENSG00000187569.2 protein_coding DPPA3 2 OTTHUMG00000168434.1 +17197 chr12 HAVANA gene 7729415 7751605 1551.0 - 0 ENSG00000198178.10 protein_coding CLEC4C 1 OTTHUMG00000168441.2 +17198 chr12 HAVANA gene 7765216 7774121 996.0 + 0 ENSG00000205857.2 protein_coding NANOGNB 2 OTTHUMG00000165107.2 +17199 chr12 ENSEMBL gene 7784403 7784511 109.0 - 0 ENSG00000201549.1 misc_RNA RF00019 3 +17200 chr12 HAVANA gene 7787794 7799141 5393.0 + 0 ENSG00000111704.10 protein_coding NANOG 2 OTTHUMG00000166019.4 +17201 chr12 ENSEMBL gene 7800361 7800467 107.0 - 0 ENSG00000199912.1 misc_RNA RF00019 3 +17202 chr12 ENSEMBL gene 7850717 7850818 102.0 - 0 ENSG00000201663.1 misc_RNA RF00019 3 +17203 chr12 ENSEMBL gene 7856169 7856471 303.0 + 0 ENSG00000278459.1 misc_RNA RF00017 3 +17204 chr12 HAVANA gene 7860437 7860764 328.0 + 0 ENSG00000241828.2 processed_pseudogene AC006517.1 1 OTTHUMG00000157430.2 pseudo_consens +17205 chr12 HAVANA gene 7870852 7871370 519.0 + 0 ENSG00000255885.1 processed_pseudogene AC124891.1 1 OTTHUMG00000168460.1 pseudo_consens +17206 chr12 HAVANA gene 7812512 7891148 5575.0 - 0 ENSG00000173262.11 protein_coding SLC2A14 1 OTTHUMG00000168463.4 ncRNA_host +17207 chr12 HAVANA gene 7896608 7896956 349.0 - 0 ENSG00000255356.2 processed_pseudogene AC007536.1 2 OTTHUMG00000166020.3 +17208 chr12 HAVANA gene 7890801 7900140 2032.0 + 0 ENSG00000176654.12 transcribed_unprocessed_pseudogene NANOGP1 2 OTTHUMG00000187943.2 +17209 chr12 HAVANA gene 7919230 7936275 6159.0 - 0 ENSG00000059804.15 protein_coding SLC2A3 2 OTTHUMG00000133685.3 +17210 chr12 ENSEMBL gene 7976259 7976360 102.0 + 0 ENSG00000206636.1 misc_RNA RF00019 3 +17211 chr12 HAVANA gene 7994770 7995084 315.0 - 0 ENSG00000240739.1 unprocessed_pseudogene AC006511.1 1 OTTHUMG00000157435.1 pseudo_consens +17212 chr12 HAVANA gene 8015024 8016406 1069.0 + 0 ENSG00000255964.1 processed_pseudogene HSPD1P12 1 OTTHUMG00000168524.1 pseudo_consens +17213 chr12 HAVANA gene 8017201 8017860 660.0 - 0 ENSG00000255581.1 processed_pseudogene AC006511.2 1 OTTHUMG00000168525.1 pseudo_consens,overlapping_locus +17214 chr12 HAVANA gene 8014093 8019007 561.0 - 0 ENSG00000282080.1 lincRNA AC006511.4 2 OTTHUMG00000191411.1 overlapping_locus +17215 chr12 HAVANA gene 8032703 8055503 6296.0 + 0 ENSG00000065970.8 protein_coding FOXJ2 2 OTTHUMG00000168526.1 +17216 chr12 HAVANA gene 8058302 8066471 2145.0 - 0 ENSG00000171860.4 protein_coding C3AR1 2 OTTHUMG00000168569.2 +17217 chr12 HAVANA gene 8080381 8082163 1783.0 - 0 ENSG00000279865.1 TEC AC006511.3 2 OTTHUMG00000168570.1 +17218 chr12 HAVANA gene 8076939 8097859 8763.0 + 0 ENSG00000089818.17 protein_coding NECAP1 1 OTTHUMG00000168568.4 overlapping_locus +17219 chr12 HAVANA gene 8133772 8134849 1078.0 - 0 ENSG00000235602.5 processed_pseudogene POU5F1P3 1 OTTHUMG00000168634.3 pseudo_consens +17220 chr12 HAVANA gene 8082269 8138548 2208.0 + 0 ENSG00000284697.1 processed_transcript AC006511.5 2 OTTHUMG00000191960.1 overlapping_locus +17221 chr12 HAVANA gene 8123632 8138607 1281.0 + 0 ENSG00000111729.14 protein_coding CLEC4A 1 OTTHUMG00000168571.3 overlapping_locus +17222 chr12 HAVANA gene 8141168 8142697 439.0 - 0 ENSG00000256171.1 processed_pseudogene GCSHP4 1 OTTHUMG00000168636.1 pseudo_consens +17223 chr12 HAVANA gene 8138140 8175320 496.0 + 0 ENSG00000284393.1 protein_coding AC092111.3 2 OTTHUMG00000192211.1 overlapping_locus +17224 chr12 HAVANA gene 8157034 8188537 3628.0 + 0 ENSG00000196946.10 protein_coding ZNF705A 2 OTTHUMG00000168635.3 overlapping_locus +17225 chr12 HAVANA gene 8205984 8207397 1414.0 + 0 ENSG00000276417.1 lincRNA AC092111.2 2 OTTHUMG00000187118.1 overlapping_locus +17226 chr12 HAVANA gene 8180209 8216151 4661.0 + 0 ENSG00000226711.6 antisense FAM66C 2 OTTHUMG00000168638.1 overlapping_locus +17227 chr12 HAVANA gene 8199599 8218911 615.0 - 0 ENSG00000244050.2 transcribed_unprocessed_pseudogene DEFB109F 2 OTTHUMG00000158674.3 +17228 chr12 HAVANA gene 8217758 8221115 3358.0 + 0 ENSG00000275367.1 lincRNA AC092111.1 2 OTTHUMG00000187119.1 +17229 chr12 HAVANA gene 8221260 8227618 2538.0 - 0 ENSG00000171847.10 protein_coding FAM90A1 2 OTTHUMG00000168641.3 +17230 chr12 HAVANA gene 8227734 8231764 424.0 + 0 ENSG00000254016.3 unprocessed_pseudogene ALG1L10P 2 OTTHUMG00000168660.2 +17231 chr12 HAVANA gene 8235415 8242564 1397.0 + 0 ENSG00000215241.3 lincRNA LINC02449 1 OTTHUMG00000168640.1 +17232 chr12 HAVANA gene 8232512 8242948 994.0 - 0 ENSG00000164845.16 transcribed_unprocessed_pseudogene FAM86FP 2 OTTHUMG00000168639.1 +17233 chr12 HAVANA gene 8254527 8308855 1031.0 - 0 ENSG00000256589.2 unprocessed_pseudogene ENPP7P5 2 OTTHUMG00000168662.2 overlapping_locus +17234 chr12 HAVANA gene 8321876 8329614 851.0 + 0 ENSG00000256101.5 lincRNA AC092745.1 2 OTTHUMG00000168666.1 overlapping_locus +17235 chr12 HAVANA gene 8340182 8340397 216.0 + 0 ENSG00000277952.1 processed_pseudogene AC092745.3 2 OTTHUMG00000187120.1 overlapping_locus +17236 chr12 HAVANA gene 8359054 8359834 781.0 - 0 ENSG00000242661.1 processed_pseudogene RPS3AP43 1 OTTHUMG00000157447.1 pseudo_consens,overlapping_locus +17237 chr12 HAVANA gene 8320381 8369555 620.0 + 0 ENSG00000256552.2 transcribed_processed_pseudogene AC092745.2 1 OTTHUMG00000168667.2 pseudo_consens,overlapping_locus +17238 chr12 HAVANA gene 8390270 8390488 219.0 - 0 ENSG00000284687.1 transcribed_unprocessed_pseudogene AC092865.4 2 OTTHUMG00000192227.1 overlapping_locus +17239 chr12 HAVANA gene 8396423 8396641 219.0 - 0 ENSG00000284673.1 transcribed_unprocessed_pseudogene AC092865.3 2 OTTHUMG00000192228.1 overlapping_locus +17240 chr12 HAVANA gene 8295986 8396803 5663.0 - 0 ENSG00000226091.7 lincRNA LINC00937 2 OTTHUMG00000168663.1 overlapping_locus +17241 chr12 HAVANA gene 8406833 8407195 363.0 - 0 ENSG00000256136.1 processed_pseudogene AC092865.2 1 OTTHUMG00000168668.1 pseudo_consens +17242 chr12 HAVANA gene 8414780 8415805 1026.0 - 0 ENSG00000238152.2 unprocessed_pseudogene OR7E140P 1 OTTHUMG00000168669.1 pseudo_consens +17243 chr12 HAVANA gene 8427640 8428610 971.0 - 0 ENSG00000214487.3 unprocessed_pseudogene OR7E148P 1 OTTHUMG00000168670.1 pseudo_consens +17244 chr12 HAVANA gene 8437403 8438425 1023.0 - 0 ENSG00000177586.6 unprocessed_pseudogene OR7E149P 1 OTTHUMG00000168671.1 pseudo_consens +17245 chr12 HAVANA gene 8460618 8461232 615.0 + 0 ENSG00000243830.2 processed_pseudogene AC092865.1 1 OTTHUMG00000157451.2 pseudo_consens,overlapping_locus +17246 chr12 HAVANA gene 8455926 8478330 1682.0 + 0 ENSG00000205846.3 protein_coding CLEC6A 2 OTTHUMG00000168672.1 overlapping_locus +17247 chr12 ENSEMBL gene 8484746 8484852 107.0 + 0 ENSG00000201780.1 snRNA RNU6-275P 3 +17248 chr12 HAVANA gene 8512374 8512726 353.0 - 0 ENSG00000246115.3 processed_pseudogene SUPT4H1P2 1 OTTHUMG00000168673.1 pseudo_consens +17249 chr12 HAVANA gene 8509475 8522366 2013.0 + 0 ENSG00000166527.7 protein_coding CLEC4D 2 OTTHUMG00000168674.2 +17250 chr12 HAVANA gene 8533305 8540963 2422.0 - 0 ENSG00000166523.7 protein_coding CLEC4E 1 OTTHUMG00000168675.1 +17251 chr12 HAVANA gene 8548361 8567613 562.0 - 0 ENSG00000255801.1 lincRNA AC092746.1 2 OTTHUMG00000168702.1 +17252 chr12 ENSEMBL gene 8592476 8592585 110.0 + 0 ENSG00000238943.1 misc_RNA RF00019 3 +17253 chr12 ENSEMBL gene 8597509 8597640 132.0 + 0 ENSG00000252727.1 scaRNA RF00564 3 +17254 chr12 HAVANA gene 8602166 8612871 3115.0 - 0 ENSG00000111732.10 protein_coding AICDA 2 OTTHUMG00000168676.2 +17255 chr12 HAVANA gene 8631545 8632259 715.0 - 0 ENSG00000280345.1 TEC AC092184.1 2 OTTHUMG00000168677.1 +17256 chr12 HAVANA gene 8634367 8637608 2285.0 + 0 ENSG00000255967.1 processed_pseudogene HADHAP2 1 OTTHUMG00000168721.1 pseudo_consens +17257 chr12 HAVANA gene 8637346 8662888 3876.0 - 0 ENSG00000197614.10 protein_coding MFAP5 1 OTTHUMG00000168703.3 +17258 chr12 HAVANA gene 8664011 8669011 488.0 + 0 ENSG00000255829.1 antisense AC092490.2 2 OTTHUMG00000168218.1 +17259 chr12 HAVANA gene 8678773 8679670 572.0 + 0 ENSG00000256004.1 processed_pseudogene AC092490.3 1 OTTHUMG00000168219.1 pseudo_consens +17260 chr12 HAVANA gene 8742428 8743072 645.0 + 0 ENSG00000244131.2 processed_pseudogene RPSAP51 1 OTTHUMG00000157454.2 pseudo_consens,overlapping_locus +17261 chr12 HAVANA gene 8681600 8783095 8619.0 + 0 ENSG00000166532.15 protein_coding RIMKLB 2 OTTHUMG00000168197.3 overlapping_locus +17262 chr12 HAVANA gene 8788257 8795789 2279.0 + 0 ENSG00000249790.2 lincRNA AC092490.1 2 OTTHUMG00000168221.3 +17263 chr12 HAVANA gene 8819816 8820713 386.0 - 0 ENSG00000256904.1 antisense A2ML1-AS2 2 OTTHUMG00000168274.1 overlapping_locus +17264 chr12 HAVANA gene 8776219 8830947 452.0 - 0 ENSG00000256661.1 antisense A2ML1-AS1 2 OTTHUMG00000168273.1 overlapping_locus +17265 chr12 HAVANA gene 8822472 8887001 7303.0 + 0 ENSG00000166535.19 protein_coding A2ML1 2 OTTHUMG00000128499.8 +17266 chr12 HAVANA gene 8858143 8915276 455.0 - 0 ENSG00000282022.1 antisense AC006581.2 2 OTTHUMG00000191418.1 +17267 chr12 HAVANA gene 8913896 8941467 6090.0 + 0 ENSG00000111752.10 protein_coding PHC1 2 OTTHUMG00000168275.2 +17268 chr12 HAVANA gene 8940363 8949955 3777.0 - 0 ENSG00000003056.7 protein_coding M6PR 1 OTTHUMG00000168276.3 +17269 chr12 HAVANA gene 8987175 8996566 496.0 - 0 ENSG00000257105.1 antisense AC006581.1 2 OTTHUMG00000168285.1 +17270 chr12 HAVANA gene 8950044 9010760 2598.0 + 0 ENSG00000139187.9 protein_coding KLRG1 2 OTTHUMG00000168277.2 +17271 chr12 HAVANA gene 9027532 9029089 950.0 - 0 ENSG00000213049.3 processed_pseudogene HNRNPA1P34 1 OTTHUMG00000168286.1 pseudo_consens +17272 chr12 HAVANA gene 9036344 9037244 901.0 + 0 ENSG00000255776.1 processed_pseudogene VDAC2P2 1 OTTHUMG00000168287.1 pseudo_consens +17273 chr12 HAVANA gene 9055586 9065070 2213.0 - 0 ENSG00000214851.4 processed_transcript LINC00612 2 OTTHUMG00000168288.1 +17274 chr12 HAVANA gene 9065177 9068684 2816.0 + 0 ENSG00000245105.3 antisense A2M-AS1 2 OTTHUMG00000168289.3 +17275 chr12 HAVANA gene 9067664 9116229 6384.0 - 0 ENSG00000175899.14 protein_coding A2M 2 OTTHUMG00000150267.7 +17276 chr12 HAVANA gene 9127783 9128645 863.0 + 0 ENSG00000256937.1 processed_pseudogene KRT17P8 1 OTTHUMG00000168327.1 pseudo_consens +17277 chr12 HAVANA gene 9135084 9135591 508.0 + 0 ENSG00000256720.1 processed_pseudogene BTG1P1 1 OTTHUMG00000168328.1 pseudo_consens +17278 chr12 HAVANA gene 9155881 9156372 492.0 - 0 ENSG00000256817.1 processed_pseudogene TPT1P12 1 OTTHUMG00000168329.1 pseudo_consens,overlapping_locus +17279 chr12 HAVANA gene 9148840 9208370 6227.0 - 0 ENSG00000126838.9 protein_coding PZP 2 OTTHUMG00000154915.2 overlapping_locus +17280 chr12 ENSEMBL gene 9239467 9239551 85.0 - 0 ENSG00000283429.1 miRNA MIR1244-3 3 +17281 chr12 HAVANA gene 9239986 9240331 346.0 - 0 ENSG00000231503.4 processed_pseudogene PTMAP4 1 OTTHUMG00000168331.1 pseudo_consens,overlapping_locus +17282 chr12 HAVANA gene 9240003 9257960 2696.0 + 0 ENSG00000237248.5 lincRNA LINC00987 2 OTTHUMG00000168333.2 +17283 chr12 HAVANA gene 9240406 9261050 1283.0 + 0 ENSG00000256427.2 lincRNA AC010175.1 2 OTTHUMG00000168332.3 +17284 chr12 HAVANA gene 9228533 9275817 4657.0 - 0 ENSG00000256069.7 transcribed_unprocessed_pseudogene A2MP1 1 OTTHUMG00000168334.3 pseudo_consens,overlapping_locus +17285 chr12 ENSEMBL gene 9286673 9286822 150.0 - 0 ENSG00000212440.1 snoRNA RF00072 3 +17286 chr12 HAVANA gene 9277235 9313241 3158.0 + 0 ENSG00000111788.10 unprocessed_pseudogene AC009533.1 2 OTTHUMG00000168367.4 +17287 chr12 HAVANA gene 9314402 9316173 586.0 - 0 ENSG00000255753.1 processed_pseudogene AC009533.2 1 OTTHUMG00000168577.1 pseudo_consens +17288 chr12 HAVANA gene 9367464 9397617 4388.0 + 0 ENSG00000260423.1 lincRNA LINC02367 2 OTTHUMG00000172909.2 +17289 chr12 HAVANA gene 9398355 9414851 400.0 - 0 ENSG00000256673.1 unprocessed_pseudogene AC141557.1 2 OTTHUMG00000168578.2 +17290 chr12 HAVANA gene 9415641 9416718 482.0 + 0 ENSG00000278635.1 unprocessed_pseudogene AC141557.2 2 OTTHUMG00000187882.2 +17291 chr12 ENSEMBL gene 9445058 9445205 148.0 + 0 ENSG00000212432.1 snoRNA RF00072 3 +17292 chr12 HAVANA gene 9418673 9448229 2947.0 - 0 ENSG00000214826.5 unprocessed_pseudogene DDX12P 2 OTTHUMG00000168579.2 +17293 chr12 HAVANA gene 9506347 9508440 2042.0 - 0 ENSG00000256975.1 processed_pseudogene AC092821.2 1 OTTHUMG00000168580.1 pseudo_consens +17294 chr12 HAVANA gene 9480608 9576275 12000.0 + 0 ENSG00000214776.12 transcribed_unprocessed_pseudogene AC092821.1 2 OTTHUMG00000192215.4 overlapping_locus +17295 chr12 HAVANA gene 9594551 9607886 1448.0 - 0 ENSG00000111796.3 protein_coding KLRB1 2 OTTHUMG00000168581.1 +17296 chr12 ENSEMBL gene 9624122 9624228 107.0 - 0 ENSG00000212345.1 snRNA RNU6-700P 3 +17297 chr12 HAVANA gene 9641723 9643011 1289.0 + 0 ENSG00000233719.4 transcribed_processed_pseudogene GOT2P3 1 OTTHUMG00000168361.3 pseudo_consens,overlapping_locus +17298 chr12 HAVANA gene 9647014 9648009 532.0 - 0 ENSG00000256442.1 antisense AC010186.1 2 OTTHUMG00000168457.1 +17299 chr12 HAVANA gene 9642872 9657070 615.0 + 0 ENSG00000272917.1 processed_transcript AC010186.4 2 OTTHUMG00000168360.4 overlapping_locus +17300 chr12 HAVANA gene 9448295 9658392 5973.0 + 0 ENSG00000284634.1 processed_transcript AC092821.3 2 OTTHUMG00000164997.5 overlapping_locus +17301 chr12 HAVANA gene 9648047 9658412 2825.0 + 0 ENSG00000256594.8 transcribed_unprocessed_pseudogene AC010186.2 2 OTTHUMG00000186391.3 overlapping_locus +17302 chr12 HAVANA gene 9658567 9662085 2508.0 + 0 ENSG00000257027.1 sense_intronic AC010186.3 2 OTTHUMG00000168442.1 +17303 chr12 HAVANA gene 9695384 9696227 844.0 + 0 ENSG00000213443.2 processed_pseudogene AC007068.1 2 OTTHUMG00000168370.1 overlapping_locus +17304 chr12 HAVANA gene 9664969 9699555 6957.0 + 0 ENSG00000069493.14 protein_coding CLEC2D 1 OTTHUMG00000168369.8 overlapping_locus +17305 chr12 HAVANA gene 9704077 9709350 560.0 + 0 ENSG00000256582.1 lincRNA LINC02390 2 OTTHUMG00000168371.1 +17306 chr12 HAVANA gene 9715860 9733299 1721.0 - 0 ENSG00000184293.7 protein_coding CLECL1 1 OTTHUMG00000168459.2 +17307 chr12 HAVANA gene 9752486 9760901 2832.0 - 0 ENSG00000110848.8 protein_coding CD69 2 OTTHUMG00000168481.4 +17308 chr12 HAVANA gene 9817350 9818025 395.0 - 0 ENSG00000256912.1 processed_pseudogene AC007068.2 1 OTTHUMG00000168482.1 pseudo_consens +17309 chr12 HAVANA gene 9827481 9845007 1260.0 + 0 ENSG00000150045.11 protein_coding KLRF1 1 OTTHUMG00000168391.5 +17310 chr12 HAVANA gene 9867027 9869808 719.0 + 0 ENSG00000255882.1 antisense AC091814.1 2 OTTHUMG00000168395.1 +17311 chr12 HAVANA gene 9852984 9870136 2638.0 - 0 ENSG00000110852.4 protein_coding CLEC2B 2 OTTHUMG00000168483.1 +17312 chr12 HAVANA gene 9881489 9895833 731.0 + 0 ENSG00000256797.1 protein_coding KLRF2 2 OTTHUMG00000187141.2 +17313 chr12 HAVANA gene 9898673 9932381 1220.0 - 0 ENSG00000188393.8 protein_coding CLEC2A 1 OTTHUMG00000140393.2 +17314 chr12 HAVANA gene 9936579 9943495 979.0 - 0 ENSG00000225231.1 lincRNA LINC02470 2 OTTHUMG00000140394.1 +17315 chr12 HAVANA gene 9948137 9953336 3956.0 - 0 ENSG00000231560.1 lincRNA CLEC12A-AS1 2 OTTHUMG00000150192.1 +17316 chr12 HAVANA gene 9951316 9995694 3250.0 + 0 ENSG00000172322.13 protein_coding CLEC12A 2 OTTHUMG00000168396.6 +17317 chr12 HAVANA gene 9985642 10013424 3670.0 - 0 ENSG00000165682.14 protein_coding CLEC1B 1 OTTHUMG00000168502.1 +17318 chr12 HAVANA gene 10010627 10018619 3667.0 + 0 ENSG00000256660.5 protein_coding CLEC12B 2 OTTHUMG00000168397.3 +17319 chr12 HAVANA gene 10015240 10030606 782.0 - 0 ENSG00000256803.1 antisense AC024224.2 2 OTTHUMG00000168503.1 +17320 chr12 HAVANA gene 10040848 10045711 609.0 + 0 ENSG00000256626.1 unprocessed_pseudogene AC024224.1 2 OTTHUMG00000168399.1 overlapping_locus +17321 chr12 HAVANA gene 10030677 10066027 2854.0 + 0 ENSG00000197992.6 protein_coding CLEC9A 1 OTTHUMG00000168398.3 overlapping_locus +17322 chr12 ENSEMBL gene 10084186 10084490 305.0 + 0 ENSG00000223042.1 misc_RNA RN7SKP161 3 +17323 chr12 HAVANA gene 10069554 10111627 3169.0 - 0 ENSG00000150048.10 protein_coding CLEC1A 1 OTTHUMG00000168504.3 +17324 chr12 HAVANA gene 10111738 10112471 734.0 + 0 ENSG00000255734.1 processed_pseudogene HNRNPABP1 1 OTTHUMG00000168406.1 pseudo_consens +17325 chr12 HAVANA gene 10116777 10130258 4190.0 - 0 ENSG00000172243.17 protein_coding CLEC7A 2 OTTHUMG00000133597.5 +17326 chr12 HAVANA gene 10158301 10172138 3057.0 - 0 ENSG00000173391.8 protein_coding OLR1 1 OTTHUMG00000168527.4 +17327 chr12 HAVANA gene 10170542 10191801 3489.0 + 0 ENSG00000165685.8 protein_coding TMEM52B 2 OTTHUMG00000168410.2 +17328 chr12 HAVANA gene 10214161 10214761 329.0 - 0 ENSG00000255958.1 antisense AC115676.1 2 OTTHUMG00000168529.1 +17329 chr12 HAVANA gene 10212458 10223130 4086.0 + 0 ENSG00000139112.10 protein_coding GABARAPL1 2 OTTHUMG00000168411.9 +17330 chr12 HAVANA gene 10226058 10329600 17404.0 + 0 ENSG00000134539.16 protein_coding KLRD1 2 OTTHUMG00000168419.7 +17331 chr12 HAVANA gene 10332861 10338292 649.0 - 0 ENSG00000256288.1 lincRNA AC022075.2 2 OTTHUMG00000168572.1 +17332 chr12 HAVANA gene 10358464 10361045 562.0 - 0 ENSG00000256155.1 lincRNA LINC02598 2 OTTHUMG00000168573.1 +17333 chr12 HAVANA gene 10372353 10391874 3030.0 - 0 ENSG00000213809.8 protein_coding KLRK1 2 OTTHUMG00000168574.2 overlapping_locus +17334 chr12 HAVANA gene 10363769 10398506 2830.0 + 0 ENSG00000245648.1 antisense AC022075.1 2 OTTHUMG00000168533.4 +17335 chr12 HAVANA gene 10407382 10409757 930.0 - 0 ENSG00000183542.5 protein_coding KLRC4 2 OTTHUMG00000168575.2 overlapping_locus +17336 chr12 HAVANA gene 10372353 10410146 2592.0 - 0 ENSG00000255819.7 protein_coding KLRC4-KLRK1 2 OTTHUMG00000168531.5 overlapping_locus +17337 chr12 HAVANA gene 10412312 10420595 1148.0 - 0 ENSG00000205810.8 protein_coding KLRC3 2 OTTHUMG00000167149.1 overlapping_locus +17338 chr12 HAVANA gene 10412312 10436001 998.0 - 0 ENSG00000255641.1 protein_coding AC068775.1 2 OTTHUMG00000168576.1 overlapping_locus +17339 chr12 HAVANA gene 10426854 10442300 1499.0 - 0 ENSG00000205809.9 protein_coding KLRC2 2 OTTHUMG00000168532.3 overlapping_locus +17340 chr12 HAVANA gene 10442264 10454685 2698.0 - 0 ENSG00000134545.13 protein_coding KLRC1 1 OTTHUMG00000168584.1 overlapping_locus +17341 chr12 HAVANA gene 10505602 10523135 2423.0 + 0 ENSG00000180574.3 protein_coding EIF2S3B 1 OTTHUMG00000168585.3 retrogene +17342 chr12 HAVANA gene 10551266 10551535 270.0 - 0 ENSG00000257016.1 processed_pseudogene SLC25A39P2 1 OTTHUMG00000168534.1 pseudo_consens +17343 chr12 HAVANA gene 10553363 10558049 868.0 + 0 ENSG00000256039.1 lincRNA LINC02446 2 OTTHUMG00000168797.1 +17344 chr12 HAVANA gene 10588063 10599669 2457.0 - 0 ENSG00000256667.6 transcribed_unprocessed_pseudogene KLRA1P 2 OTTHUMG00000160127.3 +17345 chr12 HAVANA gene 10604190 10613623 4856.0 - 0 ENSG00000111196.9 protein_coding MAGOHB 2 OTTHUMG00000168407.2 +17346 chr12 HAVANA gene 10618939 10674318 3424.0 - 0 ENSG00000060140.8 protein_coding STYK1 2 OTTHUMG00000168408.3 +17347 chr12 HAVANA gene 10699089 10723312 8610.0 - 0 ENSG00000060138.12 protein_coding YBX3 2 OTTHUMG00000168409.4 +17348 chr12 HAVANA gene 10770305 10770605 301.0 + 0 ENSG00000235930.3 processed_pseudogene HSPE1P12 1 OTTHUMG00000168489.2 pseudo_consens,overlapping_locus +17349 chr12 HAVANA gene 10750234 10777444 752.0 + 0 ENSG00000256888.5 lincRNA LINC02366 2 OTTHUMG00000168488.1 overlapping_locus +17350 chr12 HAVANA gene 10801532 10802627 1096.0 - 0 ENSG00000121377.2 protein_coding TAS2R7 2 OTTHUMG00000168505.1 +17351 chr12 HAVANA gene 10806051 10807293 1243.0 - 0 ENSG00000121314.2 protein_coding TAS2R8 2 OTTHUMG00000168506.2 +17352 chr12 HAVANA gene 10809094 10810168 1075.0 - 0 ENSG00000121381.4 protein_coding TAS2R9 2 OTTHUMG00000168507.4 +17353 chr12 HAVANA gene 10825317 10826358 1042.0 - 0 ENSG00000121318.2 protein_coding TAS2R10 2 OTTHUMG00000168508.1 overlapping_locus +17354 chr12 HAVANA gene 10831074 10832016 943.0 - 0 ENSG00000256651.1 unprocessed_pseudogene AC006518.1 2 OTTHUMG00000168509.1 overlapping_locus +17355 chr12 HAVANA gene 10845849 10849475 1310.0 - 0 ENSG00000111215.12 protein_coding PRR4 2 OTTHUMG00000192575.1 overlapping_locus +17356 chr12 ENSEMBL gene 10881011 10884255 603.0 - 0 ENSG00000284826.1 protein_coding AC006518.7 3 +17357 chr12 HAVANA gene 10894943 10896952 1075.0 - 0 ENSG00000256682.2 transcribed_processed_pseudogene AC006518.2 2 OTTHUMG00000168554.2 overlapping_locus +17358 chr12 HAVANA gene 10907926 10909562 1637.0 - 0 ENSG00000212128.2 protein_coding TAS2R13 2 OTTHUMG00000168555.1 overlapping_locus +17359 chr12 HAVANA gene 10929236 10932341 757.0 + 0 ENSG00000134551.12 protein_coding PRH2 2 OTTHUMG00000168556.1 +17360 chr12 HAVANA gene 10964425 10965352 928.0 - 0 ENSG00000212125.2 unprocessed_pseudogene TAS2R15P 1 OTTHUMG00000169063.1 pseudo_consens,overlapping_locus +17361 chr12 HAVANA gene 10985913 10986912 1000.0 - 0 ENSG00000212126.3 protein_coding TAS2R50 2 OTTHUMG00000162719.2 overlapping_locus +17362 chr12 HAVANA gene 10996495 10997875 1381.0 - 0 ENSG00000255837.1 protein_coding TAS2R20 2 OTTHUMG00000162695.2 overlapping_locus +17363 chr12 HAVANA gene 11021619 11022620 1002.0 - 0 ENSG00000212124.2 protein_coding TAS2R19 2 OTTHUMG00000162687.1 overlapping_locus +17364 chr12 HAVANA gene 11030387 11031407 1021.0 - 0 ENSG00000256436.1 protein_coding TAS2R31 2 OTTHUMG00000168558.1 overlapping_locus +17365 chr12 HAVANA gene 11048332 11049256 925.0 - 0 ENSG00000256019.1 unprocessed_pseudogene TAS2R63P 2 OTTHUMG00000168559.1 overlapping_locus +17366 chr12 HAVANA gene 11061365 11062294 930.0 - 0 ENSG00000226761.3 protein_coding TAS2R46 2 OTTHUMG00000165351.2 overlapping_locus +17367 chr12 HAVANA gene 11076769 11079171 2403.0 - 0 ENSG00000256274.1 transcribed_unprocessed_pseudogene TAS2R64P 2 OTTHUMG00000168560.1 overlapping_locus +17368 chr12 HAVANA gene 11091287 11092313 1027.0 - 0 ENSG00000255374.3 protein_coding TAS2R43 2 OTTHUMG00000165352.1 overlapping_locus +17369 chr12 HAVANA gene 11097179 11097274 96.0 - 0 ENSG00000256400.1 processed_pseudogene AC018630.1 2 OTTHUMG00000168561.1 overlapping_locus +17370 chr12 HAVANA gene 11132958 11134644 1687.0 - 0 ENSG00000256188.3 protein_coding TAS2R30 2 OTTHUMG00000168562.1 overlapping_locus +17371 chr12 HAVANA gene 11158785 11159694 910.0 - 0 ENSG00000256981.1 unprocessed_pseudogene AC134349.2 2 OTTHUMG00000168563.1 overlapping_locus +17372 chr12 HAVANA gene 11166090 11171353 385.0 - 0 ENSG00000256712.1 sense_intronic AC134349.1 2 OTTHUMG00000168564.1 overlapping_locus +17373 chr12 HAVANA gene 10937406 11171573 2350.0 - 0 ENSG00000212127.5 protein_coding TAS2R14 2 OTTHUMG00000162720.4 overlapping_locus +17374 chr12 HAVANA gene 10845849 11171600 1620.0 - 0 ENSG00000275778.2 protein_coding PRH1-PRR4 2 OTTHUMG00000186775.2 overlapping_locus +17375 chr12 HAVANA gene 10824960 11171608 3144.0 - 0 ENSG00000231887.7 protein_coding PRH1 2 OTTHUMG00000186774.3 overlapping_locus +17376 chr12 HAVANA gene 11171222 11176016 4795.0 + 0 ENSG00000256537.4 protein_coding SMIM10L1 2 OTTHUMG00000168565.3 +17377 chr12 HAVANA gene 11185993 11186937 945.0 - 0 ENSG00000186136.1 protein_coding TAS2R42 2 OTTHUMG00000168567.3 +17378 chr12 HAVANA gene 11196075 11196996 922.0 - 0 ENSG00000256657.1 unprocessed_pseudogene AC244131.1 2 OTTHUMG00000169064.2 +17379 chr12 HAVANA gene 11212219 11251389 512.0 + 0 ENSG00000275119.1 lincRNA AC244131.2 2 OTTHUMG00000169115.2 +17380 chr12 HAVANA gene 11265924 11269805 1386.0 - 0 ENSG00000197870.12 protein_coding PRB3 2 OTTHUMG00000169065.8 +17381 chr12 HAVANA gene 11307083 11310435 916.0 - 0 ENSG00000230657.6 protein_coding PRB4 2 OTTHUMG00000169116.1 +17382 chr12 HAVANA gene 11351823 11395566 1311.0 - 0 ENSG00000251655.6 protein_coding PRB1 2 OTTHUMG00000157263.4 +17383 chr12 HAVANA gene 11481383 11481656 274.0 + 0 ENSG00000237303.2 processed_pseudogene HIGD1AP8 1 OTTHUMG00000169118.1 pseudo_consens +17384 chr12 HAVANA gene 11399381 11486678 1224.0 - 0 ENSG00000255790.5 sense_intronic AC078950.1 2 OTTHUMG00000169117.2 overlapping_locus +17385 chr12 HAVANA gene 11500499 11501022 524.0 + 0 ENSG00000278654.1 processed_pseudogene AC007450.4 2 OTTHUMG00000187883.1 +17386 chr12 HAVANA gene 11391540 11501041 1793.0 - 0 ENSG00000121335.11 protein_coding PRB2 2 OTTHUMG00000156975.6 overlapping_locus +17387 chr12 HAVANA gene 11507162 11507408 247.0 - 0 ENSG00000277705.1 processed_pseudogene AC007450.3 2 OTTHUMG00000187885.1 +17388 chr12 HAVANA gene 11512723 11514136 1414.0 + 0 ENSG00000270863.1 processed_pseudogene DDX55P1 1 OTTHUMG00000184770.1 pseudo_consens +17389 chr12 HAVANA gene 11516425 11521686 290.0 - 0 ENSG00000274551.1 unprocessed_pseudogene AC007450.2 2 OTTHUMG00000187888.1 +17390 chr12 ENSEMBL gene 11546479 11546540 62.0 + 0 ENSG00000251747.1 snRNA RNU7-60P 3 +17391 chr12 HAVANA gene 11541395 11555838 188.0 - 0 ENSG00000256237.1 lincRNA AC007450.1 2 OTTHUMG00000168536.1 +17392 chr12 HAVANA gene 11548030 11590369 3793.0 + 0 ENSG00000247157.6 lincRNA LINC01252 1 OTTHUMG00000168537.1 +17393 chr12 HAVANA gene 11649854 11895402 7075.0 + 0 ENSG00000139083.10 protein_coding ETV6 1 OTTHUMG00000168538.2 +17394 chr12 HAVANA gene 12111163 12111489 327.0 + 0 ENSG00000198134.3 processed_pseudogene AC007537.1 2 OTTHUMG00000168539.1 overlapping_locus +17395 chr12 ENSEMBL gene 12111952 12112036 85.0 + 0 ENSG00000283475.1 miRNA MIR1244-4 3 +17396 chr12 HAVANA gene 12155262 12155772 511.0 + 0 ENSG00000242405.2 processed_pseudogene AC007537.2 1 OTTHUMG00000157455.2 pseudo_consens,overlapping_locus +17397 chr12 HAVANA gene 12049844 12211084 5112.0 + 0 ENSG00000121380.12 protein_coding BCL2L14 1 OTTHUMG00000159528.5 ncRNA_host,overlapping_locus +17398 chr12 ENSEMBL gene 12226674 12226777 104.0 + 0 ENSG00000199551.1 snRNA RNU6-545P 3 +17399 chr12 HAVANA gene 12248991 12249427 437.0 + 0 ENSG00000270857.1 processed_pseudogene AC007621.1 1 OTTHUMG00000184767.1 pseudo_consens +17400 chr12 HAVANA gene 12116025 12267012 10337.0 - 0 ENSG00000070018.8 protein_coding LRP6 1 OTTHUMG00000168540.2 +17401 chr12 ENSEMBL gene 12289227 12289329 103.0 - 0 ENSG00000207010.1 snRNA RNU6-318P 3 +17402 chr12 HAVANA gene 12338776 12339254 479.0 + 0 ENSG00000243141.2 processed_pseudogene RPL23AP66 1 OTTHUMG00000157461.2 pseudo_consens +17403 chr12 HAVANA gene 12326056 12350541 6015.0 - 0 ENSG00000111261.13 protein_coding MANSC1 2 OTTHUMG00000168541.3 +17404 chr12 HAVANA gene 12355406 12357067 1540.0 - 0 ENSG00000205791.3 lincRNA LOH12CR2 2 OTTHUMG00000187482.1 +17405 chr12 HAVANA gene 12452103 12452481 379.0 - 0 ENSG00000271370.1 processed_pseudogene AC007619.2 1 OTTHUMG00000184718.1 pseudo_consens +17406 chr12 HAVANA gene 12357079 12469694 4980.0 + 0 ENSG00000165714.10 protein_coding BORCS5 2 OTTHUMG00000168542.2 +17407 chr12 HAVANA gene 12485353 12491581 412.0 + 0 ENSG00000255670.1 lincRNA AC007619.1 2 OTTHUMG00000168583.1 +17408 chr12 HAVANA gene 12474210 12562383 5724.0 - 0 ENSG00000111266.8 protein_coding DUSP16 2 OTTHUMG00000168582.4 +17409 chr12 HAVANA gene 12568201 12568776 576.0 - 0 ENSG00000240424.2 processed_pseudogene AC092824.1 1 OTTHUMG00000157462.2 pseudo_consens +17410 chr12 HAVANA gene 12614359 12615907 396.0 - 0 ENSG00000271215.1 processed_pseudogene RPL21P136 1 OTTHUMG00000184724.1 pseudo_consens +17411 chr12 HAVANA gene 12611827 12645108 3922.0 + 0 ENSG00000111269.2 protein_coding CREBL2 2 OTTHUMG00000168704.1 +17412 chr12 HAVANA gene 12648939 12649713 775.0 + 0 ENSG00000275963.1 lincRNA AC008115.4 2 OTTHUMG00000187147.1 +17413 chr12 HAVANA gene 12668982 12685075 241.0 + 0 ENSG00000257004.1 lincRNA AC008115.2 2 OTTHUMG00000168706.1 +17414 chr12 HAVANA gene 12660891 12696207 2623.0 - 0 ENSG00000183150.7 protein_coding GPR19 2 OTTHUMG00000168705.2 +17415 chr12 HAVANA gene 12718973 12719521 549.0 + 0 ENSG00000275560.1 sense_intronic AC008115.3 2 OTTHUMG00000187159.1 overlapping_locus +17416 chr12 HAVANA gene 12715058 12722371 2811.0 + 0 ENSG00000111276.10 protein_coding CDKN1B 1 OTTHUMG00000149914.2 overlapping_locus +17417 chr12 HAVANA gene 12723297 12724011 150.0 - 0 ENSG00000256658.1 antisense AC008115.1 2 OTTHUMG00000168707.1 +17418 chr12 ENSEMBL gene 12764649 12764743 95.0 + 0 ENSG00000207983.1 miRNA MIR613 3 +17419 chr12 HAVANA gene 12771351 12771705 355.0 - 0 ENSG00000270296.1 processed_pseudogene STX8P1 1 OTTHUMG00000184726.1 pseudo_consens +17420 chr12 HAVANA gene 12725917 12829975 7243.0 + 0 ENSG00000178878.12 protein_coding APOLD1 2 OTTHUMG00000153561.2 ncRNA_host,overlapping_locus +17421 chr12 HAVANA gene 12813316 12829981 5040.0 + 0 ENSG00000213782.7 protein_coding DDX47 2 OTTHUMG00000168709.2 overlapping_locus +17422 chr12 HAVANA gene 12840804 12841079 276.0 - 0 ENSG00000242329.1 processed_pseudogene AC007215.1 1 OTTHUMG00000157463.1 pseudo_consens +17423 chr12 HAVANA gene 12850982 12851740 759.0 + 0 ENSG00000241352.3 processed_pseudogene AC007688.1 1 OTTHUMG00000157466.2 pseudo_consens +17424 chr12 HAVANA gene 12875499 12876107 609.0 + 0 ENSG00000234498.3 processed_pseudogene RPL13AP20 1 OTTHUMG00000157469.1 pseudo_consens +17425 chr12 ENSEMBL gene 12915829 12915918 90.0 + 0 ENSG00000283759.1 miRNA MIR614 3 +17426 chr12 HAVANA gene 12890782 12917937 8440.0 + 0 ENSG00000013588.8 protein_coding GPRC5A 2 OTTHUMG00000168710.4 ncRNA_host +17427 chr12 HAVANA gene 12940775 12952147 1124.0 - 0 ENSG00000111291.8 protein_coding GPRC5D 2 OTTHUMG00000168711.4 +17428 chr12 HAVANA gene 12962300 12963539 369.0 + 0 ENSG00000256011.1 antisense AC007688.2 2 OTTHUMG00000168720.1 overlapping_locus +17429 chr12 ENSEMBL gene 12972053 12972143 91.0 + 0 ENSG00000221611.1 snoRNA RF00604 3 +17430 chr12 HAVANA gene 12927726 12984645 3416.0 + 0 ENSG00000247498.9 antisense GPRC5D-AS1 2 OTTHUMG00000168719.4 ncRNA_host,overlapping_locus +17431 chr12 HAVANA gene 12974864 13000273 3442.0 - 0 ENSG00000013583.9 protein_coding HEBP1 1 OTTHUMG00000168771.3 +17432 chr12 HAVANA gene 13000420 13004830 4411.0 + 0 ENSG00000183935.5 transcribed_processed_pseudogene HTR7P1 1 OTTHUMG00000167959.2 pseudo_consens,overlapping_locus +17433 chr12 HAVANA gene 13021260 13021606 347.0 - 0 ENSG00000243129.2 processed_pseudogene AC023790.1 1 OTTHUMG00000157486.2 pseudo_consens +17434 chr12 HAVANA gene 13000451 13040679 2403.0 + 0 ENSG00000255621.1 lincRNA AC023790.2 2 OTTHUMG00000168772.1 overlapping_locus +17435 chr12 HAVANA gene 13083560 13103683 3005.0 - 0 ENSG00000111305.18 protein_coding GSG1 2 OTTHUMG00000150148.4 +17436 chr12 HAVANA gene 13044284 13142521 6807.0 + 0 ENSG00000084444.13 protein_coding FAM234B 2 OTTHUMG00000168774.2 +17437 chr12 HAVANA gene 13196716 13219939 7838.0 + 0 ENSG00000134531.9 protein_coding EMP1 1 OTTHUMG00000168775.5 +17438 chr12 HAVANA gene 13371089 13387167 3953.0 - 0 ENSG00000180861.9 lincRNA LINC01559 2 OTTHUMG00000167562.3 +17439 chr12 ENSEMBL gene 13440884 13441001 118.0 - 0 ENSG00000201476.1 rRNA_pseudogene RNA5SP353 3 +17440 chr12 ENSEMBL gene 13459670 13459776 107.0 - 0 ENSG00000201909.1 snRNA RNU6-590P 3 +17441 chr12 HAVANA gene 13540231 13544540 546.0 + 0 ENSG00000277935.1 lincRNA AC007527.2 2 OTTHUMG00000186750.1 overlapping_locus +17442 chr12 HAVANA gene 13526854 13547582 578.0 + 0 ENSG00000256306.1 processed_transcript AC007527.1 2 OTTHUMG00000168642.1 overlapping_locus +17443 chr12 ENSEMBL gene 13683542 13683886 345.0 + 0 ENSG00000200475.1 misc_RNA RN7SKP162 3 +17444 chr12 HAVANA gene 13437942 13981957 30941.0 - 0 ENSG00000273079.5 protein_coding GRIN2B 2 OTTHUMG00000137373.11 ncRNA_host +17445 chr12 HAVANA gene 14169746 14169877 132.0 + 0 ENSG00000256346.1 processed_pseudogene AC092470.1 1 OTTHUMG00000168651.1 pseudo_consens +17446 chr12 HAVANA gene 14192002 14192284 283.0 + 0 ENSG00000227760.2 processed_pseudogene AC135001.1 1 OTTHUMG00000168652.2 pseudo_consens +17447 chr12 HAVANA gene 14216590 14221297 640.0 + 0 ENSG00000256084.1 lincRNA AC092112.1 2 OTTHUMG00000168653.1 +17448 chr12 HAVANA gene 14237091 14237321 231.0 + 0 ENSG00000255763.1 processed_pseudogene MRPS18CP4 1 OTTHUMG00000168654.1 pseudo_consens +17449 chr12 ENSEMBL gene 14250232 14250341 110.0 - 0 ENSG00000251908.1 snRNA RNU6-491P 3 +17450 chr12 HAVANA gene 14254912 14255226 315.0 + 0 ENSG00000255749.1 processed_pseudogene GNAI2P1 1 OTTHUMG00000168655.2 pseudo_consens +17451 chr12 HAVANA gene 14356842 14365503 668.0 - 0 ENSG00000244573.3 transcribed_processed_pseudogene RPL30P11 1 OTTHUMG00000157491.5 pseudo_consens +17452 chr12 HAVANA gene 14365632 14502935 13189.0 + 0 ENSG00000171681.12 protein_coding ATF7IP 1 OTTHUMG00000168656.14 +17453 chr12 HAVANA gene 14530151 14533229 427.0 + 0 ENSG00000255649.1 antisense AC008114.1 2 OTTHUMG00000168822.1 +17454 chr12 ENSEMBL gene 14553702 14553970 269.0 - 0 ENSG00000200830.1 misc_RNA RN7SKP134 3 +17455 chr12 HAVANA gene 14503661 14568349 2841.0 - 0 ENSG00000121316.10 protein_coding PLBD1 1 OTTHUMG00000168821.4 ncRNA_host +17456 chr12 HAVANA gene 14567750 14619755 596.0 + 0 ENSG00000256751.5 antisense PLBD1-AS1 2 OTTHUMG00000168733.2 +17457 chr12 HAVANA gene 14612632 14696585 4177.0 - 0 ENSG00000070019.4 protein_coding GUCY2C 2 OTTHUMG00000168732.2 +17458 chr12 HAVANA gene 14665655 14757963 657.0 + 0 ENSG00000214772.2 antisense AC010168.1 2 OTTHUMG00000168734.1 +17459 chr12 HAVANA gene 14762504 14767931 5428.0 - 0 ENSG00000261324.2 sense_overlapping AC010168.2 2 OTTHUMG00000172902.2 +17460 chr12 HAVANA gene 14767999 14771131 2578.0 - 0 ENSG00000197837.3 protein_coding HIST4H4 1 OTTHUMG00000168735.1 +17461 chr12 HAVANA gene 14774383 14778002 3356.0 + 0 ENSG00000246705.4 protein_coding H2AFJ 2 OTTHUMG00000168736.2 retrogene +17462 chr12 HAVANA gene 14784579 14803540 5315.0 - 0 ENSG00000084463.7 protein_coding WBP11 2 OTTHUMG00000168737.4 +17463 chr12 HAVANA gene 14804650 14814182 2104.0 - 0 ENSG00000179256.2 protein_coding SMCO3 2 OTTHUMG00000167474.1 +17464 chr12 HAVANA gene 14825569 14843533 5252.0 - 0 ENSG00000111339.11 protein_coding ART4 2 OTTHUMG00000168738.2 +17465 chr12 HAVANA gene 14841092 14844708 357.0 + 0 ENSG00000256339.1 antisense AC007655.1 2 OTTHUMG00000168739.1 overlapping_locus +17466 chr12 HAVANA gene 14881181 14885926 2639.0 - 0 ENSG00000111341.9 protein_coding MGP 1 OTTHUMG00000168740.1 +17467 chr12 HAVANA gene 14803572 14906586 4570.0 + 0 ENSG00000182993.4 protein_coding C12orf60 2 OTTHUMG00000167473.3 overlapping_locus +17468 chr12 HAVANA gene 14914035 14939082 2426.0 - 0 ENSG00000139055.6 protein_coding ERP27 1 OTTHUMG00000168741.1 +17469 chr12 HAVANA gene 14942017 14961728 2102.0 - 0 ENSG00000111348.8 protein_coding ARHGDIB 2 OTTHUMG00000168742.3 +17470 chr12 HAVANA gene 14973022 14981865 747.0 + 0 ENSG00000139053.2 protein_coding PDE6H 2 OTTHUMG00000168743.1 +17471 chr12 HAVANA gene 15001833 15006683 605.0 + 0 ENSG00000255727.1 lincRNA LINC01489 2 OTTHUMG00000168744.1 +17472 chr12 HAVANA gene 15112363 15114698 301.0 - 0 ENSG00000256650.1 sense_intronic RERG-IT1 2 OTTHUMG00000168746.1 overlapping_locus +17473 chr12 HAVANA gene 15151923 15155283 337.0 + 0 ENSG00000255660.1 lincRNA RERG-AS1 2 OTTHUMG00000168747.1 +17474 chr12 HAVANA gene 15255213 15255823 611.0 - 0 ENSG00000256283.1 processed_pseudogene METTL8P1 1 OTTHUMG00000168748.1 pseudo_consens,overlapping_locus +17475 chr12 HAVANA gene 15107783 15348675 4157.0 - 0 ENSG00000134533.6 protein_coding RERG 1 OTTHUMG00000168745.2 overlapping_locus +17476 chr12 HAVANA gene 15439527 15440401 875.0 + 0 ENSG00000243916.1 processed_pseudogene AC092183.1 1 OTTHUMG00000157493.1 pseudo_consens,overlapping_locus +17477 chr12 HAVANA gene 15322397 15597399 7519.0 + 0 ENSG00000151490.13 protein_coding PTPRO 1 OTTHUMG00000168786.1 overlapping_locus +17478 chr12 ENSEMBL gene 15671707 15671810 104.0 - 0 ENSG00000200105.1 snRNA RNU6-251P 3 +17479 chr12 HAVANA gene 15780068 15782120 465.0 + 0 ENSG00000255565.1 lincRNA AC073651.1 1 OTTHUMG00000168788.1 +17480 chr12 HAVANA gene 15803164 15804158 660.0 + 0 ENSG00000256627.1 processed_pseudogene AC073651.2 1 OTTHUMG00000168789.1 pseudo_consens +17481 chr12 HAVANA gene 15620158 15882329 6200.0 - 0 ENSG00000151491.13 protein_coding EPS8 1 OTTHUMG00000168787.8 ncRNA_host,overlapping_locus +17482 chr12 HAVANA gene 15882391 15903478 2211.0 + 0 ENSG00000023734.10 protein_coding STRAP 1 OTTHUMG00000168791.1 +17483 chr12 HAVANA gene 15971890 15972609 720.0 - 0 ENSG00000256134.1 processed_pseudogene EGLN3P1 1 OTTHUMG00000168792.1 pseudo_consens +17484 chr12 HAVANA gene 15911172 16037282 2844.0 + 0 ENSG00000023697.12 protein_coding DERA 2 OTTHUMG00000165537.3 +17485 chr12 HAVANA gene 16188485 16277685 2923.0 - 0 ENSG00000188991.3 protein_coding SLC15A5 1 OTTHUMG00000168793.2 +17486 chr12 HAVANA gene 16399274 16402406 3133.0 - 0 ENSG00000256238.1 processed_pseudogene SUPT16HP1 1 OTTHUMG00000168818.2 pseudo_consens +17487 chr12 HAVANA gene 16513445 16514371 927.0 + 0 ENSG00000256450.1 processed_pseudogene AC007552.1 1 OTTHUMG00000168836.1 pseudo_consens,overlapping_locus +17488 chr12 HAVANA gene 16567411 16573940 603.0 + 0 ENSG00000256564.1 antisense AC007552.2 2 OTTHUMG00000168838.1 overlapping_locus +17489 chr12 HAVANA gene 16347142 16609259 7440.0 + 0 ENSG00000008394.12 protein_coding MGST1 1 OTTHUMG00000168816.4 overlapping_locus +17490 chr12 HAVANA gene 16548373 16610594 10268.0 - 0 ENSG00000048540.14 protein_coding LMO3 1 OTTHUMG00000168837.4 +17491 chr12 HAVANA gene 16693800 16695977 2178.0 + 0 ENSG00000255871.2 lincRNA AC007529.1 2 OTTHUMG00000168856.2 +17492 chr12 HAVANA gene 16661766 16788375 1094.0 + 0 ENSG00000283240.1 lincRNA AC007529.2 2 OTTHUMG00000168857.3 +17493 chr12 HAVANA gene 16989126 16989936 499.0 + 0 ENSG00000256211.1 processed_pseudogene AC023512.1 1 OTTHUMG00000168858.1 pseudo_consens +17494 chr12 HAVANA gene 16990670 16992083 1414.0 + 0 ENSG00000213235.3 processed_pseudogene EEF1A1P16 1 OTTHUMG00000168859.1 pseudo_consens +17495 chr12 ENSEMBL gene 17071398 17071505 108.0 - 0 ENSG00000212358.1 snRNA RNU6-837P 3 +17496 chr12 HAVANA gene 17121716 17122460 745.0 + 0 ENSG00000242991.2 processed_pseudogene RPL7P40 1 OTTHUMG00000157496.3 pseudo_consens +17497 chr12 HAVANA gene 17083531 17167790 1679.0 - 0 ENSG00000285724.1 lincRNA AC092110.1 2 OTTHUMG00000192889.2 +17498 chr12 HAVANA gene 17383352 17384647 1296.0 - 0 ENSG00000256896.1 processed_pseudogene PSMC1P8 1 OTTHUMG00000168806.1 pseudo_consens +17499 chr12 HAVANA gene 17400399 17400914 516.0 + 0 ENSG00000256756.1 processed_pseudogene TIMM17BP1 1 OTTHUMG00000168807.1 pseudo_consens +17500 chr12 HAVANA gene 17509353 17589992 1003.0 - 0 ENSG00000256994.1 lincRNA LINC02378 2 OTTHUMG00000168808.2 +17501 chr12 HAVANA gene 17589257 17615463 460.0 + 0 ENSG00000256389.1 lincRNA AC087321.1 2 OTTHUMG00000168815.1 +17502 chr12 ENSEMBL gene 17673299 17673394 96.0 + 0 ENSG00000283665.1 miRNA MIR3974 3 +17503 chr12 ENSEMBL gene 17710934 17711046 113.0 + 0 ENSG00000206662.1 misc_RNA RF00019 3 +17504 chr12 HAVANA gene 18080869 18320107 1549.0 - 0 ENSG00000111404.6 protein_coding RERGL 2 OTTHUMG00000168820.2 +17505 chr12 HAVANA gene 18358443 18358967 525.0 - 0 ENSG00000255892.1 processed_pseudogene NDFIP1P1 1 OTTHUMG00000169000.1 pseudo_consens +17506 chr12 HAVANA gene 18424663 18425140 478.0 + 0 ENSG00000255960.1 processed_pseudogene AC092851.1 1 OTTHUMG00000168842.1 pseudo_consens,overlapping_locus +17507 chr12 HAVANA gene 18493051 18493723 673.0 + 0 ENSG00000256138.1 processed_pseudogene ZKSCAN7P1 2 OTTHUMG00000168843.1 overlapping_locus +17508 chr12 HAVANA gene 18247614 18648416 5925.0 + 0 ENSG00000139144.9 protein_coding PIK3C2G 1 OTTHUMG00000168841.4 overlapping_locus +17509 chr12 HAVANA gene 18692762 18694096 1335.0 + 0 ENSG00000255993.1 processed_pseudogene PSMC1P9 1 OTTHUMG00000168910.1 pseudo_consens +17510 chr12 HAVANA gene 18714795 18737878 572.0 + 0 ENSG00000255648.1 antisense AC087242.1 2 OTTHUMG00000168938.1 +17511 chr12 HAVANA gene 18683169 18738100 3431.0 - 0 ENSG00000139151.15 protein_coding PLCZ1 1 OTTHUMG00000168937.12 +17512 chr12 HAVANA gene 18738101 18739187 1087.0 + 0 ENSG00000177938.4 protein_coding CAPZA3 2 OTTHUMG00000169001.1 +17513 chr12 HAVANA gene 19089151 19089888 738.0 + 0 ENSG00000227525.4 processed_pseudogene RPL7P6 1 OTTHUMG00000157497.1 pseudo_consens +17514 chr12 HAVANA gene 19107854 19108183 330.0 - 0 ENSG00000256844.1 processed_pseudogene MEF2BNBP1 1 OTTHUMG00000168903.1 pseudo_consens +17515 chr12 HAVANA gene 19147074 19154659 5391.0 + 0 ENSG00000253284.2 sense_intronic AC092828.1 2 OTTHUMG00000168904.1 overlapping_locus +17516 chr12 ENSEMBL gene 19176288 19176589 302.0 - 0 ENSG00000240993.3 misc_RNA RN7SL459P 3 +17517 chr12 ENSEMBL gene 19303480 19303775 296.0 + 0 ENSG00000243854.3 misc_RNA RN7SL67P 3 +17518 chr12 HAVANA gene 19129752 19376400 12558.0 + 0 ENSG00000052126.14 protein_coding PLEKHA5 1 OTTHUMG00000167921.3 ncRNA_host,overlapping_locus +17519 chr12 HAVANA gene 19413153 19413461 309.0 + 0 ENSG00000255909.1 processed_pseudogene PDCD5P1 1 OTTHUMG00000168907.1 pseudo_consens,overlapping_locus +17520 chr12 HAVANA gene 19418927 19419161 235.0 - 0 ENSG00000271462.1 processed_pseudogene AC091805.2 1 OTTHUMG00000168908.2 pseudo_consens +17521 chr12 ENSEMBL gene 19445949 19446055 107.0 - 0 ENSG00000200247.1 snRNA RNU6-254P 3 +17522 chr12 HAVANA gene 19456244 19457648 1405.0 - 0 ENSG00000245205.3 processed_pseudogene EEF1A1P4 1 OTTHUMG00000168909.1 pseudo_consens +17523 chr12 HAVANA gene 19508904 19509245 342.0 + 0 ENSG00000240328.1 processed_pseudogene AC091805.1 1 OTTHUMG00000157501.1 pseudo_consens,overlapping_locus +17524 chr12 HAVANA gene 19404045 19720801 6572.0 + 0 ENSG00000139154.14 protein_coding AEBP2 2 OTTHUMG00000168906.4 overlapping_locus +17525 chr12 ENSEMBL gene 19724435 19724599 165.0 + 0 ENSG00000200885.1 snRNA RNU1-146P 3 +17526 chr12 HAVANA gene 19941521 19943018 1498.0 + 0 ENSG00000256849.1 processed_pseudogene TCP1P3 1 OTTHUMG00000168940.1 pseudo_consens,overlapping_locus +17527 chr12 HAVANA gene 19775451 20009937 718.0 + 0 ENSG00000255910.1 lincRNA AC024901.1 2 OTTHUMG00000168939.1 overlapping_locus +17528 chr12 HAVANA gene 20014780 20098868 431.0 + 0 ENSG00000256287.1 lincRNA LINC02398 2 OTTHUMG00000168941.1 +17529 chr12 HAVANA gene 20120980 20129813 633.0 - 0 ENSG00000256499.1 lincRNA LINC02468 2 OTTHUMG00000168914.1 +17530 chr12 HAVANA gene 20361732 20370262 525.0 - 0 ENSG00000256879.1 antisense AC129102.1 2 OTTHUMG00000168961.1 +17531 chr12 HAVANA gene 20449655 20450083 429.0 - 0 ENSG00000131982.5 processed_pseudogene UBE2L2 1 OTTHUMG00000168963.1 pseudo_consens +17532 chr12 HAVANA gene 20551590 20553012 1423.0 + 0 ENSG00000256663.1 processed_pseudogene AC112777.1 1 OTTHUMG00000168964.1 pseudo_consens,overlapping_locus +17533 chr12 HAVANA gene 20369245 20684381 8398.0 + 0 ENSG00000172572.6 protein_coding PDE3A 2 OTTHUMG00000168962.2 overlapping_locus +17534 chr12 HAVANA gene 20695355 20753386 4860.0 + 0 ENSG00000139155.8 protein_coding SLCO1C1 2 OTTHUMG00000168966.2 +17535 chr12 HAVANA gene 20845065 20845260 196.0 + 0 ENSG00000256157.1 processed_pseudogene AC011604.1 1 OTTHUMG00000169012.1 pseudo_consens,overlapping_locus +17536 chr12 HAVANA gene 20810702 20916911 3542.0 + 0 ENSG00000111700.12 protein_coding SLCO1B3 2 OTTHUMG00000169011.5 overlapping_locus +17537 chr12 HAVANA gene 20815674 21090245 3774.0 + 0 ENSG00000257046.5 protein_coding AC011604.2 2 OTTHUMG00000169018.1 overlapping_locus +17538 chr12 HAVANA gene 20962768 21092745 2822.0 + 0 ENSG00000205754.11 protein_coding SLCO1B7 2 OTTHUMG00000169045.3 overlapping_locus +17539 chr12 HAVANA gene 21047179 21176895 855.0 + 0 ENSG00000257062.6 protein_coding AC022335.1 2 OTTHUMG00000169046.2 overlapping_locus +17540 chr12 HAVANA gene 21131202 21239246 2229.0 + 0 ENSG00000134538.2 protein_coding SLCO1B1 2 OTTHUMG00000169047.1 overlapping_locus +17541 chr12 HAVANA gene 21354959 21379978 2167.0 + 0 ENSG00000121351.7 protein_coding IAPP 1 OTTHUMG00000169128.2 +17542 chr12 HAVANA gene 21264600 21419594 11520.0 - 0 ENSG00000084453.16 protein_coding SLCO1A2 1 OTTHUMG00000156259.10 +17543 chr12 HAVANA gene 21447545 21448314 467.0 - 0 ENSG00000256021.1 processed_pseudogene ELOCP31 1 OTTHUMG00000169130.1 pseudo_consens +17544 chr12 HAVANA gene 21437615 21471252 5725.0 + 0 ENSG00000121350.15 protein_coding PYROXD1 1 OTTHUMG00000169129.2 +17545 chr12 HAVANA gene 21468911 21501669 3778.0 - 0 ENSG00000004700.15 protein_coding RECQL 2 OTTHUMG00000169131.2 +17546 chr12 HAVANA gene 21501781 21518408 3789.0 + 0 ENSG00000111711.9 protein_coding GOLT1B 1 OTTHUMG00000169133.2 +17547 chr12 HAVANA gene 21526307 21541249 7231.0 + 0 ENSG00000134548.10 protein_coding SPX 2 OTTHUMG00000169134.4 +17548 chr12 HAVANA gene 21536189 21604847 3132.0 - 0 ENSG00000111713.2 protein_coding GYS2 2 OTTHUMG00000169135.1 +17549 chr12 HAVANA gene 21536203 21657798 5157.0 - 0 ENSG00000285854.1 protein_coding AC010197.2 2 OTTHUMG00000193384.2 overlapping_locus +17550 chr12 HAVANA gene 21635342 21757857 2983.0 - 0 ENSG00000111716.12 protein_coding LDHB 2 OTTHUMG00000133760.4 +17551 chr12 HAVANA gene 21662313 21760032 578.0 + 0 ENSG00000256615.1 antisense AC010197.1 2 OTTHUMG00000169137.1 overlapping_locus +17552 chr12 HAVANA gene 21759980 21766705 456.0 + 0 ENSG00000255644.1 antisense AC010185.1 2 OTTHUMG00000169092.1 overlapping_locus +17553 chr12 HAVANA gene 21764955 21775581 2484.0 - 0 ENSG00000121361.3 protein_coding KCNJ8 2 OTTHUMG00000169093.2 +17554 chr12 HAVANA gene 21828360 21828564 205.0 - 0 ENSG00000275567.1 sense_intronic AC008250.2 2 OTTHUMG00000187104.1 overlapping_locus +17555 chr12 HAVANA gene 21827210 21887957 522.0 + 0 ENSG00000257022.1 antisense AC008250.1 2 OTTHUMG00000169095.1 +17556 chr12 HAVANA gene 21797401 21942529 11616.0 - 0 ENSG00000069431.11 protein_coding ABCC9 2 OTTHUMG00000169094.4 overlapping_locus +17557 chr12 HAVANA gene 22008348 22008880 533.0 + 0 ENSG00000255627.1 processed_pseudogene AC092862.1 1 OTTHUMG00000169096.1 pseudo_consens +17558 chr12 HAVANA gene 22046174 22065674 2018.0 + 0 ENSG00000111726.12 protein_coding CMAS 2 OTTHUMG00000169097.2 +17559 chr12 HAVANA gene 22104491 22105320 830.0 - 0 ENSG00000274624.1 sense_intronic AC007671.1 2 OTTHUMG00000187113.1 overlapping_locus +17560 chr12 HAVANA gene 22116629 22134851 619.0 - 0 ENSG00000283582.1 unitary_pseudogene SULT6B2P 2 OTTHUMG00000191806.1 overlapping_locus +17561 chr12 ENSEMBL gene 22195469 22195629 161.0 - 0 ENSG00000212172.1 snRNA RNU1-149P 3 +17562 chr12 HAVANA gene 22395088 22398075 389.0 - 0 ENSG00000256714.1 lincRNA AC087318.1 2 OTTHUMG00000169099.1 overlapping_locus +17563 chr12 HAVANA gene 22063773 22437041 14483.0 - 0 ENSG00000111728.10 protein_coding ST8SIA1 1 OTTHUMG00000169098.3 ncRNA_host,overlapping_locus +17564 chr12 HAVANA gene 22460519 22463914 738.0 - 0 ENSG00000256973.1 lincRNA AC053513.1 2 OTTHUMG00000169101.1 overlapping_locus +17565 chr12 HAVANA gene 22448583 22544546 6759.0 - 0 ENSG00000111731.12 protein_coding C2CD5 2 OTTHUMG00000169100.3 overlapping_locus +17566 chr12 HAVANA gene 22573425 22575105 915.0 + 0 ENSG00000256371.1 processed_pseudogene LRRC34P1 1 OTTHUMG00000169102.1 pseudo_consens +17567 chr12 HAVANA gene 22596228 22596551 324.0 + 0 ENSG00000256774.1 processed_pseudogene AC087241.2 2 OTTHUMG00000169007.1 +17568 chr12 HAVANA gene 22601425 22618867 429.0 + 0 ENSG00000250166.2 lincRNA AC087241.1 2 OTTHUMG00000169038.1 +17569 chr12 HAVANA gene 22609228 22625015 862.0 - 0 ENSG00000257023.1 antisense AC087241.3 2 OTTHUMG00000169039.1 +17570 chr12 HAVANA gene 22638464 22638943 480.0 + 0 ENSG00000274885.1 sense_intronic AC087241.4 2 OTTHUMG00000187116.1 overlapping_locus +17571 chr12 HAVANA gene 22625075 22690665 8191.0 + 0 ENSG00000139163.15 protein_coding ETNK1 1 OTTHUMG00000169008.4 overlapping_locus +17572 chr12 HAVANA gene 22722229 22722469 241.0 + 0 ENSG00000241451.2 processed_pseudogene RPS27P22 1 OTTHUMG00000157506.2 pseudo_consens,overlapping_locus +17573 chr12 HAVANA gene 22742582 22743091 424.0 + 0 ENSG00000256923.1 lincRNA AC084819.1 2 OTTHUMG00000169010.1 overlapping_locus +17574 chr12 HAVANA gene 23108458 23108493 36.0 - 0 ENSG00000256353.1 processed_pseudogene AC087258.2 2 OTTHUMG00000169040.1 +17575 chr12 HAVANA gene 22699859 23174125 5441.0 + 0 ENSG00000256995.6 lincRNA AC084816.1 2 OTTHUMG00000169009.6 overlapping_locus +17576 chr12 HAVANA gene 23099368 23191587 1743.0 + 0 ENSG00000256321.5 lincRNA AC087258.1 2 OTTHUMG00000169025.2 overlapping_locus +17577 chr12 HAVANA gene 23181334 23251499 1329.0 - 0 ENSG00000115934.11 lincRNA AC087235.1 2 OTTHUMG00000169041.1 +17578 chr12 HAVANA gene 23637973 23638487 401.0 + 0 ENSG00000256473.1 antisense AC087260.1 2 OTTHUMG00000169027.1 +17579 chr12 ENSEMBL gene 24212421 24212495 75.0 + 0 ENSG00000216192.1 miRNA MIR920 3 +17580 chr12 HAVANA gene 24223271 24237965 710.0 + 0 ENSG00000256120.1 lincRNA SOX5-AS1 2 OTTHUMG00000169058.1 +17581 chr12 HAVANA gene 23529500 24562544 10445.0 - 0 ENSG00000134532.16 protein_coding SOX5 2 OTTHUMG00000169026.6 +17582 chr12 HAVANA gene 24566964 24584168 1710.0 - 0 ENSG00000197503.4 lincRNA LINC00477 2 OTTHUMG00000159485.1 +17583 chr12 HAVANA gene 24583561 24584549 989.0 + 0 ENSG00000256852.1 processed_pseudogene KNOP1P1 1 OTTHUMG00000169059.2 pseudo_consens +17584 chr12 HAVANA gene 24642687 24643166 480.0 + 0 ENSG00000244662.1 processed_pseudogene AC087312.1 1 OTTHUMG00000157509.1 pseudo_consens +17585 chr12 ENSEMBL gene 24706788 24707083 296.0 + 0 ENSG00000240481.3 misc_RNA RN7SL38P 3 +17586 chr12 HAVANA gene 24704565 24774213 670.0 + 0 ENSG00000255745.1 lincRNA AC023796.1 2 OTTHUMG00000169029.1 ncRNA_host +17587 chr12 HAVANA gene 24830421 24836558 451.0 + 0 ENSG00000256482.1 antisense AC023796.2 2 OTTHUMG00000169054.1 +17588 chr12 HAVANA gene 24902309 24904681 2373.0 + 0 ENSG00000278969.1 TEC AC026310.3 2 OTTHUMG00000187475.1 +17589 chr12 HAVANA gene 24810022 24949459 11775.0 - 0 ENSG00000060982.14 protein_coding BCAT1 2 OTTHUMG00000169053.4 +17590 chr12 HAVANA gene 24949163 24960158 728.0 + 0 ENSG00000255921.1 antisense AC026310.2 2 OTTHUMG00000169055.1 +17591 chr12 HAVANA gene 24967127 24967504 378.0 - 0 ENSG00000213736.2 processed_pseudogene AC026310.1 1 OTTHUMG00000169030.1 pseudo_consens +17592 chr12 HAVANA gene 24993424 25006403 2683.0 - 0 ENSG00000226397.8 lincRNA C12orf77 2 OTTHUMG00000170185.3 +17593 chr12 HAVANA gene 25092715 25093900 1186.0 - 0 ENSG00000258546.1 processed_pseudogene CENPUP2 1 OTTHUMG00000170823.1 pseudo_consens +17594 chr12 HAVANA gene 25096868 25100980 490.0 - 0 ENSG00000258449.1 antisense AC023510.1 2 OTTHUMG00000170824.1 +17595 chr12 HAVANA gene 25103124 25103869 746.0 - 0 ENSG00000276842.1 antisense AC023510.2 2 OTTHUMG00000187127.1 +17596 chr12 HAVANA gene 25004342 25108334 6610.0 + 0 ENSG00000118308.15 protein_coding LRMP 1 OTTHUMG00000170192.16 +17597 chr12 HAVANA gene 25108420 25195162 2952.0 - 0 ENSG00000118307.18 protein_coding CASC1 2 OTTHUMG00000150195.7 +17598 chr12 HAVANA gene 25195216 25209645 2466.0 + 0 ENSG00000205707.10 protein_coding ETFRF1 1 OTTHUMG00000171190.5 +17599 chr12 HAVANA gene 25210652 25211233 582.0 + 0 ENSG00000274987.1 antisense AC092794.1 2 OTTHUMG00000187134.1 +17600 chr12 HAVANA gene 25225103 25225665 563.0 + 0 ENSG00000275197.1 antisense AC092794.2 2 OTTHUMG00000187135.1 +17601 chr12 HAVANA gene 25204789 25250936 7302.0 - 0 ENSG00000133703.11 protein_coding KRAS 2 OTTHUMG00000171193.2 +17602 chr12 HAVANA gene 25385670 25386241 572.0 - 0 ENSG00000278743.1 lincRNA AC087239.1 2 OTTHUMG00000187136.1 +17603 chr12 ENSEMBL gene 25404288 25404428 141.0 - 0 ENSG00000201439.1 snRNA RNU4-67P 3 +17604 chr12 HAVANA gene 25409293 25409445 153.0 - 0 ENSG00000241846.1 processed_pseudogene AC092451.1 2 OTTHUMG00000157510.1 overlapping_locus +17605 chr12 HAVANA gene 25423600 25424942 1343.0 + 0 ENSG00000279173.1 TEC AC092451.3 2 OTTHUMG00000169110.1 +17606 chr12 HAVANA gene 25435581 25436238 658.0 - 0 ENSG00000256079.1 processed_pseudogene AC092451.2 1 OTTHUMG00000169103.1 pseudo_consens,overlapping_locus +17607 chr12 HAVANA gene 25440875 25441052 178.0 - 0 ENSG00000255988.1 processed_pseudogene TUBB4BP1 2 OTTHUMG00000169104.1 overlapping_locus +17608 chr12 HAVANA gene 25585994 25592928 553.0 - 0 ENSG00000257009.1 sense_intronic AC022367.1 2 OTTHUMG00000169105.1 overlapping_locus +17609 chr12 HAVANA gene 25409307 25648579 3083.0 - 0 ENSG00000152936.10 protein_coding LMNTD1 1 OTTHUMG00000169052.3 overlapping_locus +17610 chr12 ENSEMBL gene 25779287 25779569 283.0 - 0 ENSG00000222950.1 misc_RNA RN7SKP262 3 +17611 chr12 HAVANA gene 25803298 25804526 1229.0 + 0 ENSG00000255725.2 processed_pseudogene TDGP1 1 OTTHUMG00000169086.1 pseudo_consens +17612 chr12 HAVANA gene 25782706 25814171 772.0 - 0 ENSG00000256686.1 lincRNA AC019209.3 2 OTTHUMG00000169123.1 +17613 chr12 HAVANA gene 25831416 25834182 373.0 - 0 ENSG00000256440.1 lincRNA AC019209.2 2 OTTHUMG00000169124.1 +17614 chr12 ENSEMBL gene 25874020 25874079 60.0 - 0 ENSG00000283603.1 miRNA MIR4302 3 +17615 chr12 HAVANA gene 25882955 25885855 486.0 - 0 ENSG00000256256.1 lincRNA AC019209.1 2 OTTHUMG00000169125.1 +17616 chr12 HAVANA gene 25939329 25959765 3981.0 - 0 ENSG00000246695.7 antisense RASSF8-AS1 2 OTTHUMG00000169126.2 +17617 chr12 HAVANA gene 25959029 26079892 7619.0 + 0 ENSG00000123094.15 protein_coding RASSF8 2 OTTHUMG00000169087.6 +17618 chr12 HAVANA gene 26120026 26125127 3948.0 - 0 ENSG00000123095.5 protein_coding BHLHE41 2 OTTHUMG00000169174.1 +17619 chr12 HAVANA gene 26125155 26126617 826.0 - 0 ENSG00000256894.1 antisense AC022509.3 2 OTTHUMG00000169175.1 +17620 chr12 HAVANA gene 26273329 26273900 572.0 - 0 ENSG00000278095.1 antisense AC022509.4 2 OTTHUMG00000187149.1 overlapping_locus +17621 chr12 HAVANA gene 26121991 26299290 6821.0 + 0 ENSG00000123096.11 protein_coding SSPN 2 OTTHUMG00000169167.4 +17622 chr12 HAVANA gene 26315715 26317813 475.0 + 0 ENSG00000255858.1 lincRNA AC055720.1 2 OTTHUMG00000169178.1 +17623 chr12 HAVANA gene 26230819 26319720 1128.0 - 0 ENSG00000255750.5 antisense AC022509.1 2 OTTHUMG00000169177.1 overlapping_locus +17624 chr12 HAVANA gene 26211164 26335856 699.0 - 0 ENSG00000256234.1 antisense AC022509.2 2 OTTHUMG00000169176.1 overlapping_locus +17625 chr12 HAVANA gene 26335864 26336950 172.0 - 0 ENSG00000256185.1 3prime_overlapping_ncRNA AC055720.2 2 OTTHUMG00000169180.1 overlapping_locus +17626 chr12 ENSEMBL gene 26373598 26373733 136.0 - 0 ENSG00000212549.1 rRNA_pseudogene RNA5SP354 3 +17627 chr12 HAVANA gene 26318953 26421462 775.0 + 0 ENSG00000255968.1 antisense AC024145.1 2 OTTHUMG00000169179.1 +17628 chr12 HAVANA gene 26623369 26649479 876.0 + 0 ENSG00000234428.2 antisense AC023051.1 2 OTTHUMG00000169229.1 +17629 chr12 HAVANA gene 26800843 26801302 460.0 + 0 ENSG00000256640.1 processed_pseudogene AC023051.2 1 OTTHUMG00000169230.1 pseudo_consens +17630 chr12 HAVANA gene 26336515 26833198 12750.0 - 0 ENSG00000123104.11 protein_coding ITPR2 2 OTTHUMG00000169181.4 overlapping_locus +17631 chr12 HAVANA gene 26905181 26938326 3345.0 - 0 ENSG00000064102.14 protein_coding INTS13 1 OTTHUMG00000169193.5 +17632 chr12 HAVANA gene 26938383 26966650 5971.0 + 0 ENSG00000111790.13 protein_coding FGFR1OP2 1 OTTHUMG00000169231.2 +17633 chr12 HAVANA gene 26971586 26979582 2549.0 + 0 ENSG00000247903.1 antisense AC024896.1 2 OTTHUMG00000169268.1 +17634 chr12 HAVANA gene 26973195 27014434 3888.0 - 0 ENSG00000064115.10 protein_coding TM7SF3 2 OTTHUMG00000169243.8 +17635 chr12 HAVANA gene 27037100 27038960 1861.0 + 0 ENSG00000275764.1 lincRNA AC092747.4 2 OTTHUMG00000187154.2 overlapping_locus +17636 chr12 HAVANA gene 27022546 27066343 3224.0 + 0 ENSG00000152944.8 protein_coding MED21 2 OTTHUMG00000169276.3 overlapping_locus +17637 chr12 HAVANA gene 27081058 27082514 957.0 - 0 ENSG00000214700.5 protein_coding C12orf71 2 OTTHUMG00000169274.1 +17638 chr12 HAVANA gene 27093923 27094223 301.0 - 0 ENSG00000271418.1 processed_pseudogene AC092747.3 1 OTTHUMG00000184732.1 pseudo_consens +17639 chr12 HAVANA gene 27121910 27147664 983.0 + 0 ENSG00000256625.1 unprocessed_pseudogene AC092747.2 2 OTTHUMG00000169283.1 +17640 chr12 HAVANA gene 27105151 27161393 615.0 - 0 ENSG00000256226.1 lincRNA AC092747.1 2 OTTHUMG00000169275.1 +17641 chr12 HAVANA gene 27243968 27325959 6921.0 + 0 ENSG00000211455.7 protein_coding STK38L 2 OTTHUMG00000169284.2 +17642 chr12 HAVANA gene 27332854 27425289 6983.0 + 0 ENSG00000029153.14 protein_coding ARNTL2 1 OTTHUMG00000169257.2 +17643 chr12 HAVANA gene 27389789 27446625 804.0 - 0 ENSG00000245311.2 antisense ARNTL2-AS1 2 OTTHUMG00000169258.1 +17644 chr12 HAVANA gene 27496937 27498589 1418.0 + 0 ENSG00000257037.1 processed_pseudogene RARSP1 1 OTTHUMG00000169206.1 pseudo_consens,overlapping_locus +17645 chr12 HAVANA gene 27466810 27502185 1978.0 + 0 ENSG00000165935.9 protein_coding SMCO2 2 OTTHUMG00000169205.1 overlapping_locus +17646 chr12 HAVANA gene 27547050 27552773 2639.0 - 0 ENSG00000248100.2 lincRNA AC087257.1 2 OTTHUMG00000169208.1 +17647 chr12 HAVANA gene 27592461 27594039 928.0 - 0 ENSG00000256056.1 unprocessed_pseudogene AC087257.2 2 OTTHUMG00000169209.1 +17648 chr12 HAVANA gene 27608733 27609046 314.0 - 0 ENSG00000256557.1 processed_pseudogene AC009509.3 2 OTTHUMG00000169210.1 +17649 chr12 HAVANA gene 27523431 27695564 11690.0 + 0 ENSG00000110841.13 protein_coding PPFIBP1 2 OTTHUMG00000169207.3 +17650 chr12 HAVANA gene 27696519 27697596 1078.0 + 0 ENSG00000174236.3 protein_coding REP15 2 OTTHUMG00000169212.1 +17651 chr12 HAVANA gene 27700066 27700574 509.0 + 0 ENSG00000276261.1 antisense AC009509.4 2 OTTHUMG00000187164.1 +17652 chr12 HAVANA gene 27702338 27702906 569.0 + 0 ENSG00000230519.2 processed_pseudogene HMGB1P49 1 OTTHUMG00000169213.1 pseudo_consens +17653 chr12 HAVANA gene 27704568 27708365 429.0 + 0 ENSG00000256504.2 lincRNA AC009509.2 2 OTTHUMG00000169214.2 +17654 chr12 HAVANA gene 27696388 27710770 1519.0 - 0 ENSG00000256377.5 antisense AC009509.1 2 OTTHUMG00000169211.1 +17655 chr12 ENSEMBL gene 27752874 27752986 113.0 + 0 ENSG00000252585.1 misc_RNA RF00019 3 +17656 chr12 HAVANA gene 27710773 27756295 1979.0 + 0 ENSG00000061794.12 protein_coding MRPS35 2 OTTHUMG00000169215.1 ncRNA_host +17657 chr12 HAVANA gene 27762738 27771276 1023.0 - 0 ENSG00000205693.3 protein_coding MANSC4 1 OTTHUMG00000169216.3 +17658 chr12 HAVANA gene 27779821 27781067 679.0 - 0 ENSG00000256747.1 antisense AC009511.2 2 OTTHUMG00000169218.1 +17659 chr12 HAVANA gene 27798641 27800708 191.0 - 0 ENSG00000256512.1 antisense AC009511.1 2 OTTHUMG00000169219.1 +17660 chr12 HAVANA gene 27780020 27803040 7622.0 + 0 ENSG00000087448.10 protein_coding KLHL42 2 OTTHUMG00000169217.2 +17661 chr12 ENSEMBL gene 27806082 27806390 309.0 - 0 ENSG00000201612.1 misc_RNA RN7SKP15 3 +17662 chr12 ENSEMBL gene 27824207 27824382 176.0 - 0 ENSG00000274075.1 misc_RNA RF02271 3 +17663 chr12 HAVANA gene 27935523 27935749 227.0 - 0 ENSG00000256378.1 unprocessed_pseudogene AC008011.1 2 OTTHUMG00000169220.1 +17664 chr12 HAVANA gene 27958517 27969813 792.0 + 0 ENSG00000257042.1 antisense AC008011.2 2 OTTHUMG00000169222.1 +17665 chr12 HAVANA gene 27958084 27972705 3377.0 - 0 ENSG00000087494.15 protein_coding PTHLH 2 OTTHUMG00000169221.3 +17666 chr12 HAVANA gene 28164958 28165662 554.0 + 0 ENSG00000255951.1 processed_pseudogene AC022364.2 1 OTTHUMG00000169143.1 pseudo_consens,overlapping_locus +17667 chr12 HAVANA gene 28185625 28186190 566.0 - 0 ENSG00000278733.1 antisense AC022079.2 2 OTTHUMG00000187167.1 overlapping_locus +17668 chr12 HAVANA gene 28163298 28190738 2728.0 - 0 ENSG00000247934.4 antisense AC022364.1 2 OTTHUMG00000169142.2 overlapping_locus +17669 chr12 HAVANA gene 28236227 28236828 602.0 + 0 ENSG00000273989.1 sense_intronic AC022079.1 2 OTTHUMG00000187168.2 overlapping_locus +17670 chr12 ENSEMBL gene 28319335 28319463 129.0 - 0 ENSG00000252237.1 snRNA RNU4-54P 3 +17671 chr12 ENSEMBL gene 28505394 28505528 135.0 + 0 ENSG00000202187.1 rRNA_pseudogene RNA5SP355 3 +17672 chr12 HAVANA gene 28564678 28565141 464.0 - 0 ENSG00000244712.1 processed_pseudogene AC084754.1 1 OTTHUMG00000157513.1 pseudo_consens +17673 chr12 HAVANA gene 28133249 28581511 7535.0 + 0 ENSG00000123106.10 protein_coding CCDC91 2 OTTHUMG00000169141.3 overlapping_locus +17674 chr12 HAVANA gene 28821975 28825831 433.0 - 0 ENSG00000256513.1 lincRNA AC022081.1 2 OTTHUMG00000169144.1 +17675 chr12 HAVANA gene 28978584 28978685 102.0 + 0 ENSG00000278687.1 processed_pseudogene AC024255.1 2 OTTHUMG00000187917.1 +17676 chr12 HAVANA gene 29143196 29148675 593.0 - 0 ENSG00000257258.1 lincRNA AC012150.1 2 OTTHUMG00000169319.1 +17677 chr12 HAVANA gene 29156448 29156991 544.0 - 0 ENSG00000275278.1 antisense AC012150.2 2 OTTHUMG00000187169.1 +17678 chr12 HAVANA gene 29277397 29277882 486.0 - 0 ENSG00000275476.1 antisense AC009318.4 2 OTTHUMG00000187170.1 +17679 chr12 HAVANA gene 29280418 29317848 2813.0 - 0 ENSG00000257176.2 antisense AC009318.1 2 OTTHUMG00000169321.2 +17680 chr12 HAVANA gene 29331434 29331936 503.0 - 0 ENSG00000274315.1 antisense AC009318.3 2 OTTHUMG00000187171.1 +17681 chr12 HAVANA gene 29332733 29333383 651.0 - 0 ENSG00000273680.1 antisense AC009318.2 2 OTTHUMG00000187173.1 +17682 chr12 HAVANA gene 29149103 29340980 5411.0 + 0 ENSG00000064763.10 protein_coding FAR2 1 OTTHUMG00000169320.3 +17683 chr12 HAVANA gene 29337352 29381189 5826.0 - 0 ENSG00000087502.17 protein_coding ERGIC2 2 OTTHUMG00000169322.2 +17684 chr12 HAVANA gene 29389289 29487488 6810.0 + 0 ENSG00000257599.2 antisense OVCH1-AS1 1 OTTHUMG00000169323.2 +17685 chr12 HAVANA gene 29412474 29497686 3958.0 - 0 ENSG00000187950.8 protein_coding OVCH1 1 OTTHUMG00000167741.3 +17686 chr12 HAVANA gene 29519731 29529974 349.0 + 0 ENSG00000257456.1 antisense AC009320.1 2 OTTHUMG00000169325.1 +17687 chr12 HAVANA gene 29658376 29658798 423.0 - 0 ENSG00000242986.2 processed_pseudogene RPL21P99 1 OTTHUMG00000157515.2 pseudo_consens,overlapping_locus +17688 chr12 HAVANA gene 29500840 29784759 14636.0 - 0 ENSG00000133687.15 protein_coding TMTC1 2 OTTHUMG00000169324.1 overlapping_locus +17689 chr12 HAVANA gene 30169881 30170091 211.0 - 0 ENSG00000276431.1 processed_pseudogene AC023511.2 2 OTTHUMG00000187916.1 +17690 chr12 HAVANA gene 30200983 30217916 571.0 + 0 ENSG00000257262.1 lincRNA AC023511.1 2 OTTHUMG00000169331.1 +17691 chr12 HAVANA gene 30230779 30296707 1062.0 - 0 ENSG00000257756.5 lincRNA LINC02386 2 OTTHUMG00000169332.1 +17692 chr12 ENSEMBL gene 30306431 30306524 94.0 - 0 ENSG00000251781.1 rRNA_pseudogene RNA5SP356 3 +17693 chr12 HAVANA gene 30306065 30307611 285.0 + 0 ENSG00000284682.1 unitary_pseudogene AC078776.2 2 OTTHUMG00000192263.1 +17694 chr12 HAVANA gene 30320834 30321617 562.0 + 0 ENSG00000257932.1 lincRNA AC078776.1 2 OTTHUMG00000169333.1 +17695 chr12 HAVANA gene 30454919 30492302 419.0 + 0 ENSG00000258202.1 unprocessed_pseudogene AC026371.1 2 OTTHUMG00000169334.1 +17696 chr12 HAVANA gene 30628988 30695986 6926.0 - 0 ENSG00000133704.9 protein_coding IPO8 1 OTTHUMG00000169172.5 +17697 chr12 HAVANA gene 30696121 30700220 2293.0 + 0 ENSG00000285870.1 lincRNA AC012673.1 2 OTTHUMG00000192807.1 +17698 chr12 HAVANA gene 30709552 30754951 8392.0 - 0 ENSG00000110888.17 protein_coding CAPRIN2 1 OTTHUMG00000169185.7 +17699 chr12 HAVANA gene 30755074 30780739 1552.0 + 0 ENSG00000246331.2 lincRNA AC010198.1 2 OTTHUMG00000169308.1 overlapping_locus +17700 chr12 HAVANA gene 30755167 30802602 1355.0 + 0 ENSG00000235884.4 lincRNA LINC00941 2 OTTHUMG00000193396.1 overlapping_locus +17701 chr12 HAVANA gene 30861921 30862179 259.0 + 0 ENSG00000258118.1 processed_pseudogene PPIAP44 1 OTTHUMG00000169310.1 pseudo_consens +17702 chr12 HAVANA gene 30795458 30879268 18914.0 + 0 ENSG00000285517.1 lincRNA LINC00941 2 OTTHUMG00000169309.2 overlapping_locus +17703 chr12 HAVANA gene 30926428 30996599 7113.0 + 0 ENSG00000110900.14 protein_coding TSPAN11 2 OTTHUMG00000168484.1 +17704 chr12 HAVANA gene 30978308 31006010 1995.0 - 0 ENSG00000226472.8 transcribed_unprocessed_pseudogene AC008013.1 2 OTTHUMG00000168485.5 +17705 chr12 HAVANA gene 31012503 31015806 616.0 + 0 ENSG00000256984.2 transcribed_processed_pseudogene AC008013.2 2 OTTHUMG00000168486.2 +17706 chr12 HAVANA gene 31020763 31073847 2581.0 - 0 ENSG00000245614.3 antisense DDX11-AS1 2 OTTHUMG00000168487.3 +17707 chr12 ENSEMBL gene 31076867 31077016 150.0 - 0 ENSG00000212533.1 snoRNA RF00072 3 +17708 chr12 HAVANA gene 31073845 31104791 8374.0 + 0 ENSG00000013573.16 protein_coding DDX11 2 OTTHUMG00000168435.6 +17709 chr12 HAVANA gene 31105105 31106830 675.0 - 0 ENSG00000270926.1 unprocessed_pseudogene AC008013.3 1 OTTHUMG00000184735.1 pseudo_consens +17710 chr12 HAVANA gene 31111652 31201235 7202.0 - 0 ENSG00000177359.20 transcribed_unprocessed_pseudogene AC024940.1 2 OTTHUMG00000165051.6 +17711 chr12 HAVANA gene 31244440 31244685 246.0 + 0 ENSG00000270766.1 processed_pseudogene AC024940.4 1 OTTHUMG00000184765.1 pseudo_consens +17712 chr12 HAVANA gene 31251992 31252597 606.0 - 0 ENSG00000243517.1 processed_pseudogene AC024940.2 1 OTTHUMG00000157517.1 pseudo_consens +17713 chr12 HAVANA gene 31254361 31254445 85.0 - 0 ENSG00000270395.1 processed_pseudogene MREGP1 1 OTTHUMG00000184737.1 pseudo_consens +17714 chr12 HAVANA gene 31280422 31280895 474.0 - 0 ENSG00000275097.1 3prime_overlapping_ncRNA AC024940.5 2 OTTHUMG00000187191.1 overlapping_locus +17715 chr12 HAVANA gene 31311617 31312029 316.0 + 0 ENSG00000256176.1 processed_pseudogene AC024940.3 1 OTTHUMG00000168587.1 pseudo_consens +17716 chr12 HAVANA gene 31324316 31325829 1514.0 + 0 ENSG00000177340.5 antisense FLJ13224 2 OTTHUMG00000187470.1 +17717 chr12 HAVANA gene 31280584 31327058 5748.0 - 0 ENSG00000139146.13 protein_coding SINHCAF 2 OTTHUMG00000168586.2 overlapping_locus +17718 chr12 ENSEMBL gene 31366288 31366366 79.0 + 0 ENSG00000283256.1 snRNA RF00026 3 +17719 chr12 HAVANA gene 31363481 31369301 868.0 - 0 ENSG00000256232.1 lincRNA LINC02387 2 OTTHUMG00000169033.1 +17720 chr12 ENSEMBL gene 31396390 31396501 112.0 + 0 ENSG00000200388.1 snRNA RNU6-618P 3 +17721 chr12 HAVANA gene 31443792 31444208 417.0 - 0 ENSG00000275769.1 sense_intronic AC068792.1 2 OTTHUMG00000187200.1 overlapping_locus +17722 chr12 HAVANA gene 31465062 31465842 781.0 + 0 ENSG00000203437.3 processed_pseudogene AC022080.1 1 OTTHUMG00000169035.1 pseudo_consens +17723 chr12 HAVANA gene 31477506 31477987 482.0 + 0 ENSG00000256159.1 processed_pseudogene AC022080.3 1 OTTHUMG00000169036.1 pseudo_consens +17724 chr12 ENSEMBL gene 31506303 31506404 102.0 - 0 ENSG00000201228.1 misc_RNA RF00019 3 +17725 chr12 HAVANA gene 31534715 31535247 533.0 - 0 ENSG00000225349.2 processed_pseudogene AC022080.2 2 OTTHUMG00000169037.1 overlapping_locus +17726 chr12 HAVANA gene 31382223 31591097 11310.0 - 0 ENSG00000170456.15 protein_coding DENND5B 2 OTTHUMG00000169034.1 ncRNA_host,overlapping_locus +17727 chr12 ENSEMBL gene 31594093 31594206 114.0 - 0 ENSG00000252390.1 snRNA RNU5F-4P 3 +17728 chr12 HAVANA gene 31597114 31597409 296.0 - 0 ENSG00000231788.4 processed_pseudogene RPL31P50 1 OTTHUMG00000157525.2 pseudo_consens +17729 chr12 HAVANA gene 31589923 31615666 1308.0 + 0 ENSG00000255867.1 antisense DENND5B-AS1 2 OTTHUMG00000169083.1 +17730 chr12 HAVANA gene 31615771 31616439 669.0 - 0 ENSG00000233381.3 processed_pseudogene AK4P3 2 OTTHUMG00000169084.1 +17731 chr12 HAVANA gene 31647160 31673114 6868.0 + 0 ENSG00000139160.13 protein_coding ETFBKMT 1 OTTHUMG00000169085.3 +17732 chr12 HAVANA gene 31715342 31715781 440.0 - 0 ENSG00000276058.1 processed_pseudogene STMN1P1 1 OTTHUMG00000186659.1 pseudo_consens,overlapping_locus +17733 chr12 HAVANA gene 31671137 31729174 3195.0 - 0 ENSG00000151743.10 protein_coding AMN1 1 OTTHUMG00000169192.3 overlapping_locus +17734 chr12 HAVANA gene 31729117 31731204 2088.0 + 0 ENSG00000276900.1 antisense AC023157.3 2 OTTHUMG00000187205.1 +17735 chr12 HAVANA gene 31748100 31748240 141.0 - 0 ENSG00000256843.1 processed_pseudogene AC023157.2 2 OTTHUMG00000169237.2 +17736 chr12 HAVANA gene 31754720 31755121 402.0 + 0 ENSG00000223722.3 processed_pseudogene AC023157.1 1 OTTHUMG00000169238.1 pseudo_consens +17737 chr12 HAVANA gene 31791185 31792241 1057.0 - 0 ENSG00000188375.4 protein_coding H3F3C 2 OTTHUMG00000157811.1 retrogene +17738 chr12 ENSEMBL gene 31802958 31803090 133.0 - 0 ENSG00000252421.1 snRNA RNU6-1069P 3 +17739 chr12 ENSEMBL gene 31811088 31811190 103.0 + 0 ENSG00000252204.1 snoRNA RF00402 3 +17740 chr12 HAVANA gene 31853021 31853407 387.0 - 0 ENSG00000256372.1 processed_pseudogene AC023050.2 1 OTTHUMG00000169239.1 pseudo_consens +17741 chr12 HAVANA gene 31877079 31887203 852.0 - 0 ENSG00000255760.1 lincRNA LINC02422 2 OTTHUMG00000169240.1 +17742 chr12 HAVANA gene 31893370 31893702 333.0 + 0 ENSG00000256465.1 processed_pseudogene AC023050.3 1 OTTHUMG00000169241.1 pseudo_consens +17743 chr12 HAVANA gene 31897820 31898123 304.0 + 0 ENSG00000244436.2 processed_pseudogene AC023050.1 1 OTTHUMG00000157527.2 pseudo_consens +17744 chr12 HAVANA gene 31948334 31948827 494.0 + 0 ENSG00000242314.1 processed_pseudogene RPL12P32 1 OTTHUMG00000157529.1 pseudo_consens +17745 chr12 HAVANA gene 31953889 31955268 1380.0 + 0 ENSG00000256987.1 processed_pseudogene AC023050.4 1 OTTHUMG00000169242.1 pseudo_consens +17746 chr12 HAVANA gene 31959370 31993107 6646.0 + 0 ENSG00000174718.11 protein_coding KIAA1551 2 OTTHUMG00000128501.5 +17747 chr12 HAVANA gene 32000375 32001222 848.0 + 0 ENSG00000276136.1 lincRNA AC016957.2 2 OTTHUMG00000187207.1 +17748 chr12 HAVANA gene 32007127 32007435 309.0 + 0 ENSG00000257094.1 processed_pseudogene AC016957.1 1 OTTHUMG00000169292.1 pseudo_consens +17749 chr12 HAVANA gene 32072734 32072880 147.0 + 0 ENSG00000257852.1 processed_pseudogene AC048344.2 2 OTTHUMG00000169305.1 +17750 chr12 HAVANA gene 32100485 32100735 251.0 - 0 ENSG00000271357.1 processed_pseudogene AC048344.3 2 OTTHUMG00000184740.1 +17751 chr12 HAVANA gene 32104117 32107528 407.0 - 0 ENSG00000257530.1 antisense AC048344.1 2 OTTHUMG00000169306.1 +17752 chr12 HAVANA gene 32109076 32109602 527.0 + 0 ENSG00000277342.1 sense_intronic AC048344.4 2 OTTHUMG00000187209.1 overlapping_locus +17753 chr12 HAVANA gene 32227410 32228154 745.0 - 0 ENSG00000258134.1 processed_pseudogene AC016954.1 1 OTTHUMG00000169405.1 pseudo_consens +17754 chr12 HAVANA gene 32339368 32340724 1357.0 + 0 ENSG00000274964.1 sense_intronic AC026356.1 2 OTTHUMG00000187236.2 overlapping_locus +17755 chr12 HAVANA gene 32352349 32354144 1796.0 + 0 ENSG00000276115.1 sense_intronic AC026356.2 2 OTTHUMG00000187242.2 overlapping_locus +17756 chr12 HAVANA gene 32106835 32383633 12868.0 + 0 ENSG00000151746.13 protein_coding BICD1 1 OTTHUMG00000169307.5 overlapping_locus +17757 chr12 ENSEMBL gene 32396050 32396147 98.0 - 0 ENSG00000207176.1 misc_RNA RF00019 3 +17758 chr12 ENSEMBL gene 32477382 32477471 90.0 - 0 ENSG00000253063.1 snRNA RNU6-494P 3 +17759 chr12 HAVANA gene 32399529 32646050 10629.0 + 0 ENSG00000139132.14 protein_coding FGD4 1 OTTHUMG00000137374.7 +17760 chr12 HAVANA gene 32692504 32692848 345.0 - 0 ENSG00000257643.1 processed_pseudogene AC084824.2 1 OTTHUMG00000169452.1 pseudo_consens +17761 chr12 ENSEMBL gene 32705403 32705506 104.0 - 0 ENSG00000201563.1 misc_RNA RF00019 3 +17762 chr12 HAVANA gene 32725248 32725660 413.0 - 0 ENSG00000276148.1 antisense AC084824.5 2 OTTHUMG00000187261.1 +17763 chr12 HAVANA gene 32726383 32727387 1005.0 - 0 ENSG00000257511.1 processed_pseudogene AC084824.1 1 OTTHUMG00000169453.1 pseudo_consens +17764 chr12 HAVANA gene 32728169 32729024 856.0 - 0 ENSG00000274105.1 sense_intronic AC084824.3 2 OTTHUMG00000187255.1 overlapping_locus +17765 chr12 HAVANA gene 32736930 32737660 731.0 - 0 ENSG00000275854.1 sense_intronic AC084824.4 2 OTTHUMG00000187264.1 overlapping_locus +17766 chr12 HAVANA gene 32679200 32745650 7282.0 + 0 ENSG00000087470.17 protein_coding DNM1L 2 OTTHUMG00000169451.2 +17767 chr12 HAVANA gene 32727490 32755902 2152.0 - 0 ENSG00000139131.12 protein_coding YARS2 2 OTTHUMG00000169454.2 overlapping_locus +17768 chr12 HAVANA gene 32820142 32820567 426.0 - 0 ENSG00000274976.1 sense_intronic AC087588.2 2 OTTHUMG00000187269.1 overlapping_locus +17769 chr12 HAVANA gene 32863118 32863433 316.0 + 0 ENSG00000244743.1 processed_pseudogene AC087588.1 1 OTTHUMG00000157531.1 pseudo_consens +17770 chr12 HAVANA gene 32790745 32896840 7043.0 - 0 ENSG00000057294.14 protein_coding PKP2 2 OTTHUMG00000169500.3 overlapping_locus +17771 chr12 HAVANA gene 32985838 32987070 1233.0 + 0 ENSG00000257316.1 processed_pseudogene AC087311.1 1 OTTHUMG00000169504.1 pseudo_consens +17772 chr12 HAVANA gene 32988763 32993754 320.0 + 0 ENSG00000257435.1 lincRNA AC087311.2 2 OTTHUMG00000169505.1 +17773 chr12 HAVANA gene 33404872 33405896 1025.0 - 0 ENSG00000259937.2 sense_intronic AC023158.1 2 OTTHUMG00000176816.2 overlapping_locus +17774 chr12 HAVANA gene 33432311 33432853 543.0 - 0 ENSG00000273853.1 sense_intronic AC023158.2 2 OTTHUMG00000187274.1 overlapping_locus +17775 chr12 HAVANA gene 33374238 33439819 5082.0 - 0 ENSG00000110975.8 protein_coding SYT10 2 OTTHUMG00000169269.2 overlapping_locus +17776 chr12 HAVANA gene 33454345 33455452 1108.0 + 0 ENSG00000256070.1 processed_pseudogene AC016956.1 1 OTTHUMG00000169270.1 pseudo_consens +17777 chr12 ENSEMBL gene 33576095 33576200 106.0 + 0 ENSG00000212475.1 snRNA RNU6-400P 3 +17778 chr12 HAVANA gene 33717853 33718217 365.0 + 0 ENSG00000270807.1 processed_pseudogene AC024153.1 1 OTTHUMG00000184762.1 pseudo_consens +17779 chr12 ENSEMBL gene 33923374 33923480 107.0 - 0 ENSG00000207026.1 snRNA RNU6-472P 3 +17780 chr12 ENSEMBL gene 33982465 33982566 102.0 - 0 ENSG00000201624.1 misc_RNA RF00019 3 +17781 chr12 HAVANA gene 34022281 34029694 4389.0 + 0 ENSG00000139133.6 protein_coding ALG10 2 OTTHUMG00000169285.2 +17782 chr12 HAVANA gene 34022281 34046417 2179.0 - 0 ENSG00000245482.2 antisense AC046130.1 2 OTTHUMG00000169286.1 +17783 chr12 HAVANA gene 34037438 34056740 794.0 + 0 ENSG00000256538.1 lincRNA AC046130.2 2 OTTHUMG00000169287.1 +17784 chr12 HAVANA gene 34149839 34162238 534.0 + 0 ENSG00000255628.1 lincRNA AC140847.1 1 OTTHUMG00000169288.1 +17785 chr12 HAVANA gene 34162477 34163442 708.0 + 0 ENSG00000256986.2 unprocessed_pseudogene AC140847.3 2 OTTHUMG00000169289.2 +17786 chr12 HAVANA gene 34164773 34166954 1324.0 - 0 ENSG00000250788.1 unprocessed_pseudogene TUBB8P4 2 OTTHUMG00000163440.1 +17787 chr12 ENSEMBL gene 34205699 34205817 119.0 + 0 ENSG00000272435.1 rRNA_pseudogene RNA5SP357 3 +17788 chr12 HAVANA gene 34208415 34209675 1261.0 - 0 ENSG00000258794.3 processed_pseudogene DUX4L27 1 OTTHUMG00000170996.3 pseudo_consens,overlapping_locus +17789 chr12 HAVANA gene 34191279 34218853 501.0 - 0 ENSG00000255652.3 lincRNA AC140847.2 2 OTTHUMG00000169290.3 overlapping_locus +17790 chr12 HAVANA gene 34249481 34249958 478.0 + 0 ENSG00000256614.1 processed_pseudogene AK6P1 1 OTTHUMG00000169291.1 pseudo_consens +17791 chr12 HAVANA gene 37575587 37576384 223.0 + 0 ENSG00000258368.2 unprocessed_pseudogene ZNF970P 2 OTTHUMG00000169295.2 +17792 chr12 HAVANA gene 38078529 38078999 471.0 - 0 ENSG00000257173.1 processed_pseudogene AK6P2 1 OTTHUMG00000169296.1 pseudo_consens +17793 chr12 HAVANA gene 38082046 38087392 1485.0 + 0 ENSG00000258278.2 unprocessed_pseudogene CLUHP8 2 OTTHUMG00000169297.2 +17794 chr12 ENSEMBL gene 38150050 38150138 89.0 + 0 ENSG00000274293.1 misc_RNA RF01518 3 +17795 chr12 ENSEMBL gene 38161466 38161582 117.0 - 0 ENSG00000199843.1 rRNA_pseudogene RNA5SP358 3 +17796 chr12 ENSEMBL gene 38163403 38163515 113.0 - 0 ENSG00000201708.1 rRNA_pseudogene RNA5SP359 3 +17797 chr12 HAVANA gene 38201566 38203792 1351.0 + 0 ENSG00000254381.3 unprocessed_pseudogene TUBB8P5 2 OTTHUMG00000169395.1 +17798 chr12 HAVANA gene 38205098 38206009 620.0 - 0 ENSG00000257292.2 unprocessed_pseudogene AC117372.1 2 OTTHUMG00000169415.2 +17799 chr12 HAVANA gene 38206231 38207192 583.0 - 0 ENSG00000258360.1 unprocessed_pseudogene NF1P12 2 OTTHUMG00000169416.1 +17800 chr12 ENSEMBL gene 38274448 38274549 102.0 - 0 ENSG00000253016.1 misc_RNA RF00019 3 +17801 chr12 HAVANA gene 38316578 38329728 11449.0 + 0 ENSG00000175548.8 protein_coding ALG10B 2 OTTHUMG00000169298.5 +17802 chr12 HAVANA gene 38532895 38533050 156.0 - 0 ENSG00000257645.1 processed_pseudogene AC087897.1 2 OTTHUMG00000169417.1 +17803 chr12 HAVANA gene 38544177 38589812 723.0 - 0 ENSG00000258119.1 lincRNA AC087897.2 2 OTTHUMG00000169418.1 +17804 chr12 HAVANA gene 38646822 38907430 5178.0 - 0 ENSG00000139117.13 protein_coding CPNE8 2 OTTHUMG00000169396.3 +17805 chr12 HAVANA gene 38906451 38909592 526.0 + 0 ENSG00000257718.1 antisense CPNE8-AS1 2 OTTHUMG00000169406.1 +17806 chr12 HAVANA gene 38994803 38996882 305.0 - 0 ENSG00000257586.1 unprocessed_pseudogene AC018448.2 2 OTTHUMG00000169407.1 +17807 chr12 HAVANA gene 39058028 39059933 316.0 - 0 ENSG00000257237.1 unprocessed_pseudogene AC018448.1 2 OTTHUMG00000169408.1 +17808 chr12 HAVANA gene 39087713 39092874 546.0 - 0 ENSG00000258144.1 lincRNA LINC02406 2 OTTHUMG00000169409.1 +17809 chr12 HAVANA gene 39170646 39170880 235.0 + 0 ENSG00000270718.1 processed_pseudogene AC084373.1 1 OTTHUMG00000184760.1 pseudo_consens +17810 chr12 HAVANA gene 39293228 39443390 10117.0 - 0 ENSG00000139116.18 protein_coding KIF21A 2 OTTHUMG00000169335.4 +17811 chr12 HAVANA gene 39466442 39467345 802.0 - 0 ENSG00000255991.2 processed_pseudogene AC121334.1 1 OTTHUMG00000169336.1 pseudo_consens +17812 chr12 HAVANA gene 39539581 39539851 271.0 - 0 ENSG00000270273.1 processed_pseudogene AC121334.2 1 OTTHUMG00000184742.1 pseudo_consens +17813 chr12 HAVANA gene 39611819 39614648 2503.0 + 0 ENSG00000285732.1 antisense AC121334.3 2 OTTHUMG00000192667.1 +17814 chr12 HAVANA gene 39550033 39619751 6238.0 - 0 ENSG00000173208.3 protein_coding ABCD2 2 OTTHUMG00000169337.1 +17815 chr12 ENSEMBL gene 39819750 39819883 134.0 - 0 ENSG00000199571.1 snoRNA RF00414 3 +17816 chr12 HAVANA gene 39626167 39908300 4454.0 + 0 ENSG00000180116.15 protein_coding C12orf40 2 OTTHUMG00000133567.4 +17817 chr12 HAVANA gene 40068243 40068590 348.0 - 0 ENSG00000229014.3 processed_pseudogene RPL30P13 1 OTTHUMG00000059744.3 pseudo_consens,overlapping_locus +17818 chr12 HAVANA gene 39755021 40106089 10027.0 - 0 ENSG00000151229.12 protein_coding SLC2A13 2 OTTHUMG00000059743.3 ncRNA_host,overlapping_locus +17819 chr12 HAVANA gene 40140926 40142876 1951.0 - 0 ENSG00000260943.1 lincRNA LINC02555 2 OTTHUMG00000172895.1 +17820 chr12 HAVANA gene 40156113 40211419 5451.0 + 0 ENSG00000223914.2 lincRNA LINC02471 1 OTTHUMG00000059745.3 overlapping_locus +17821 chr12 HAVANA gene 40186009 40224915 2280.0 - 0 ENSG00000225342.2 antisense AC079630.1 2 OTTHUMG00000133699.2 +17822 chr12 HAVANA gene 40286289 40286662 374.0 + 0 ENSG00000229899.1 processed_pseudogene AC084290.1 2 OTTHUMG00000059907.1 overlapping_locus +17823 chr12 HAVANA gene 40196744 40369285 13465.0 + 0 ENSG00000188906.15 protein_coding LRRK2 1 OTTHUMG00000059742.11 overlapping_locus +17824 chr12 HAVANA gene 40395853 40443847 356.0 - 0 ENSG00000258167.1 antisense AC107023.1 2 OTTHUMG00000169361.1 +17825 chr12 ENSEMBL gene 40554161 40554267 107.0 - 0 ENSG00000207492.1 snRNA RNU6-713P 3 +17826 chr12 HAVANA gene 40393395 40570832 29490.0 + 0 ENSG00000205592.14 protein_coding MUC19 1 OTTHUMG00000060732.36 reference_genome_error +17827 chr12 HAVANA gene 40728811 40729897 1087.0 + 0 ENSG00000257680.1 processed_pseudogene AC016144.1 1 OTTHUMG00000169363.1 pseudo_consens,overlapping_locus +17828 chr12 HAVANA gene 40978744 40979244 501.0 + 0 ENSG00000274682.1 sense_intronic AC015540.1 2 OTTHUMG00000187308.1 overlapping_locus +17829 chr12 HAVANA gene 40692442 41072418 7492.0 + 0 ENSG00000018236.14 protein_coding CNTN1 2 OTTHUMG00000169362.3 overlapping_locus +17830 chr12 HAVANA gene 41409467 41473510 1274.0 - 0 ENSG00000257228.5 antisense AC090531.1 2 OTTHUMG00000169365.1 +17831 chr12 HAVANA gene 41188448 41574724 4723.0 + 0 ENSG00000165966.15 protein_coding PDZRN4 2 OTTHUMG00000169364.3 +17832 chr12 ENSEMBL gene 41658676 41658793 118.0 + 0 ENSG00000252364.1 rRNA_pseudogene RNA5SP360 3 +17833 chr12 HAVANA gene 41698495 41699182 688.0 - 0 ENSG00000258239.1 unprocessed_pseudogene MTND2P17 2 OTTHUMG00000169366.1 +17834 chr12 HAVANA gene 41699391 41700251 861.0 - 0 ENSG00000257858.1 unprocessed_pseudogene MTND1P24 2 OTTHUMG00000169367.1 +17835 chr12 HAVANA gene 41764189 41765581 408.0 + 0 ENSG00000257784.1 lincRNA LINC02400 2 OTTHUMG00000169376.1 +17836 chr12 HAVANA gene 41911256 41912212 465.0 + 0 ENSG00000257128.1 processed_pseudogene AC006197.1 1 OTTHUMG00000169378.1 pseudo_consens +17837 chr12 HAVANA gene 41829898 41932592 499.0 - 0 ENSG00000257239.1 lincRNA AC090630.1 2 OTTHUMG00000169377.1 +17838 chr12 HAVANA gene 42069935 42070625 691.0 - 0 ENSG00000271379.1 processed_pseudogene AC023513.1 1 OTTHUMG00000184792.1 pseudo_consens +17839 chr12 HAVANA gene 42081845 42144879 7497.0 - 0 ENSG00000151233.10 protein_coding GXYLT1 2 OTTHUMG00000169379.1 +17840 chr12 HAVANA gene 42157104 42238349 10839.0 - 0 ENSG00000015153.14 protein_coding YAF2 2 OTTHUMG00000169380.4 +17841 chr12 HAVANA gene 42286911 42288560 1650.0 + 0 ENSG00000257674.1 processed_pseudogene AC020629.1 1 OTTHUMG00000169441.1 pseudo_consens,overlapping_locus +17842 chr12 ENSEMBL gene 42323700 42323859 160.0 - 0 ENSG00000278520.1 miRNA MIR7851 3 +17843 chr12 HAVANA gene 42312078 42326118 2446.0 - 0 ENSG00000139168.7 protein_coding ZCRB1 2 OTTHUMG00000169382.1 ncRNA_host +17844 chr12 ENSEMBL gene 42347061 42347214 154.0 - 0 ENSG00000252917.1 snoRNA RF00090 3 +17845 chr12 HAVANA gene 42361267 42361703 437.0 + 0 ENSG00000274943.1 sense_intronic AC079684.1 2 OTTHUMG00000187314.2 overlapping_locus +17846 chr12 ENSEMBL gene 42398550 42398651 102.0 + 0 ENSG00000199886.1 snRNA RNU6-249P 3 +17847 chr12 HAVANA gene 42431665 42433357 775.0 - 0 ENSG00000257376.1 processed_pseudogene AC079601.2 1 OTTHUMG00000169442.1 pseudo_consens +17848 chr12 ENSEMBL gene 42454720 42454821 102.0 + 0 ENSG00000207142.1 misc_RNA RF00019 3 +17849 chr12 HAVANA gene 42238447 42459715 12155.0 + 0 ENSG00000134283.17 protein_coding PPHLN1 1 OTTHUMG00000169440.3 ncRNA_host,overlapping_locus +17850 chr12 HAVANA gene 42459366 42466128 2791.0 + 0 ENSG00000257225.1 antisense AC079601.1 2 OTTHUMG00000169444.1 overlapping_locus +17851 chr12 HAVANA gene 42485353 42490019 447.0 - 0 ENSG00000258068.1 sense_intronic AC079600.3 2 OTTHUMG00000169456.1 overlapping_locus +17852 chr12 HAVANA gene 42456757 42590355 8247.0 - 0 ENSG00000139174.11 protein_coding PRICKLE1 2 OTTHUMG00000169443.4 overlapping_locus +17853 chr12 HAVANA gene 42627008 42627137 130.0 - 0 ENSG00000257687.1 processed_pseudogene AC079600.2 2 OTTHUMG00000169458.1 overlapping_locus +17854 chr12 HAVANA gene 42636815 42637111 297.0 - 0 ENSG00000257405.1 processed_pseudogene AC079600.1 1 OTTHUMG00000169459.1 pseudo_consens,overlapping_locus +17855 chr12 HAVANA gene 42615503 42646498 1212.0 - 0 ENSG00000257510.1 lincRNA LINC02402 2 OTTHUMG00000169457.2 overlapping_locus +17856 chr12 HAVANA gene 42678873 42679124 252.0 - 0 ENSG00000240759.1 processed_pseudogene RPS27P21 1 OTTHUMG00000157540.1 pseudo_consens +17857 chr12 HAVANA gene 42646583 42686701 811.0 + 0 ENSG00000257164.5 lincRNA LINC02451 2 OTTHUMG00000169347.1 +17858 chr12 HAVANA gene 42692216 42717119 1003.0 + 0 ENSG00000257114.2 lincRNA LINC02450 2 OTTHUMG00000169348.2 +17859 chr12 HAVANA gene 42929848 42930579 732.0 - 0 ENSG00000271272.1 processed_pseudogene AC068802.1 1 OTTHUMG00000184794.1 pseudo_consens +17860 chr12 HAVANA gene 42966122 42967353 256.0 + 0 ENSG00000257849.1 lincRNA AC012038.2 2 OTTHUMG00000169349.1 +17861 chr12 HAVANA gene 42979254 42996486 552.0 - 0 ENSG00000257373.1 lincRNA AC012038.1 2 OTTHUMG00000169350.1 +17862 chr12 HAVANA gene 43054089 43054386 298.0 - 0 ENSG00000257927.1 processed_pseudogene MRPS36P5 1 OTTHUMG00000169351.1 pseudo_consens +17863 chr12 HAVANA gene 43155315 43163110 836.0 + 0 ENSG00000258331.1 lincRNA LINC02461 2 OTTHUMG00000169352.1 +17864 chr12 HAVANA gene 43353866 43551921 7242.0 - 0 ENSG00000173157.16 protein_coding ADAMTS20 1 OTTHUMG00000169353.1 +17865 chr12 HAVANA gene 43560784 43561297 478.0 - 0 ENSG00000241251.2 processed_pseudogene AC090525.1 1 OTTHUMG00000157550.2 pseudo_consens +17866 chr12 HAVANA gene 43569769 43572038 2270.0 - 0 ENSG00000257813.2 processed_pseudogene AC090525.2 1 OTTHUMG00000169354.2 pseudo_consens +17867 chr12 HAVANA gene 43633093 43633281 189.0 + 0 ENSG00000271508.1 processed_pseudogene AC090525.3 1 OTTHUMG00000184759.1 pseudo_consens +17868 chr12 HAVANA gene 43659827 43661101 1275.0 + 0 ENSG00000257907.2 processed_pseudogene EEF1A1P17 1 OTTHUMG00000169355.2 pseudo_consens +17869 chr12 HAVANA gene 43736628 43741067 1170.0 + 0 ENSG00000257896.1 transcribed_unprocessed_pseudogene AC093012.1 2 OTTHUMG00000169424.1 +17870 chr12 HAVANA gene 43718993 43758817 14037.0 - 0 ENSG00000129317.14 protein_coding PUS7L 2 OTTHUMG00000169423.3 +17871 chr12 HAVANA gene 43758944 43789543 5629.0 + 0 ENSG00000198001.13 protein_coding IRAK4 2 OTTHUMG00000169425.3 +17872 chr12 HAVANA gene 43793723 43806375 3932.0 - 0 ENSG00000151239.13 protein_coding TWF1 2 OTTHUMG00000169426.3 +17873 chr12 HAVANA gene 44008620 44010143 1524.0 - 0 ENSG00000258212.1 processed_pseudogene ZNF75BP 2 OTTHUMG00000169428.1 +17874 chr12 HAVANA gene 44248432 44249004 573.0 - 0 ENSG00000257864.1 processed_pseudogene AC025030.1 1 OTTHUMG00000169430.1 pseudo_consens,overlapping_locus +17875 chr12 HAVANA gene 44244394 44263982 567.0 - 0 ENSG00000257947.1 antisense AC025030.2 2 OTTHUMG00000169429.1 overlapping_locus +17876 chr12 HAVANA gene 43835967 44389762 3440.0 + 0 ENSG00000139173.9 protein_coding TMEM117 2 OTTHUMG00000169427.3 +17877 chr12 HAVANA gene 44498616 44499158 543.0 - 0 ENSG00000275286.1 lincRNA AC025253.1 2 OTTHUMG00000187335.1 +17878 chr12 ENSEMBL gene 44880868 44880969 102.0 - 0 ENSG00000201788.1 misc_RNA RF00019 3 +17879 chr12 HAVANA gene 44508275 44921848 6424.0 - 0 ENSG00000184613.10 protein_coding NELL2 2 OTTHUMG00000169464.2 ncRNA_host +17880 chr12 HAVANA gene 45014672 45051099 2806.0 - 0 ENSG00000185610.6 protein_coding DBX2 2 OTTHUMG00000169559.1 +17881 chr12 HAVANA gene 45063473 45065351 1879.0 - 0 ENSG00000257331.1 processed_pseudogene RACGAP1P 1 OTTHUMG00000169561.1 pseudo_consens +17882 chr12 HAVANA gene 45071769 45072843 1075.0 + 0 ENSG00000257572.1 processed_pseudogene AC008127.2 1 OTTHUMG00000169562.1 pseudo_consens,overlapping_locus +17883 chr12 HAVANA gene 45050901 45103107 499.0 + 0 ENSG00000257319.1 antisense AC008127.1 2 OTTHUMG00000169560.1 overlapping_locus +17884 chr12 ENSEMBL gene 45117771 45117888 118.0 + 0 ENSG00000199556.1 rRNA_pseudogene RNA5SP361 3 +17885 chr12 HAVANA gene 45200817 45201551 735.0 + 0 ENSG00000257738.2 processed_pseudogene AC009248.1 1 OTTHUMG00000169563.2 pseudo_consens +17886 chr12 HAVANA gene 45173064 45216041 2320.0 - 0 ENSG00000134297.6 transcribed_processed_pseudogene PLEKHA8P1 1 OTTHUMG00000168776.2 pseudo_consens +17887 chr12 HAVANA gene 45256473 45256726 254.0 + 0 ENSG00000278351.1 sense_intronic AC009248.2 2 OTTHUMG00000187338.1 overlapping_locus +17888 chr12 HAVANA gene 45215987 45440404 8235.0 + 0 ENSG00000177119.15 protein_coding ANO6 2 OTTHUMG00000169564.1 overlapping_locus +17889 chr12 HAVANA gene 45444766 45445438 673.0 + 0 ENSG00000257368.2 processed_pseudogene AC063924.1 1 OTTHUMG00000169565.2 pseudo_consens +17890 chr12 ENSEMBL gene 45554590 45554659 70.0 - 0 ENSG00000283545.1 snRNA RF00026 3 +17891 chr12 HAVANA gene 45481871 45610620 1120.0 - 0 ENSG00000257657.2 lincRNA AC079950.1 2 OTTHUMG00000169469.2 ncRNA_host +17892 chr12 HAVANA gene 45718046 45727775 9730.0 - 0 ENSG00000273015.2 lincRNA AC008124.1 2 OTTHUMG00000185943.2 +17893 chr12 HAVANA gene 45789189 45789657 469.0 + 0 ENSG00000278475.1 sense_intronic AC009464.1 2 OTTHUMG00000187352.1 overlapping_locus +17894 chr12 ENSEMBL gene 45874035 45874330 296.0 + 0 ENSG00000265093.2 misc_RNA RN7SL246P 3 +17895 chr12 HAVANA gene 45880950 45882266 1317.0 - 0 ENSG00000270429.1 processed_pseudogene KNOP1P2 1 OTTHUMG00000184793.1 pseudo_consens +17896 chr12 HAVANA gene 45729665 45908040 12127.0 + 0 ENSG00000189079.15 protein_coding ARID2 2 OTTHUMG00000150487.4 ncRNA_host,overlapping_locus +17897 chr12 HAVANA gene 45919131 45992120 14035.0 - 0 ENSG00000139218.17 protein_coding SCAF11 1 OTTHUMG00000149930.8 +17898 chr12 HAVANA gene 46004038 46004685 648.0 - 0 ENSG00000239397.1 processed_pseudogene AC084878.1 1 OTTHUMG00000157553.1 pseudo_consens +17899 chr12 HAVANA gene 46239106 46239473 368.0 - 0 ENSG00000274591.1 sense_intronic AC025031.3 2 OTTHUMG00000187358.1 overlapping_locus +17900 chr12 HAVANA gene 46183063 46270017 10015.0 - 0 ENSG00000111371.15 protein_coding SLC38A1 1 OTTHUMG00000169470.3 overlapping_locus +17901 chr12 HAVANA gene 46358189 46372867 6602.0 - 0 ENSG00000134294.13 protein_coding SLC38A2 2 OTTHUMG00000169471.1 +17902 chr12 HAVANA gene 46371463 46373778 627.0 + 0 ENSG00000258096.1 antisense AC025031.2 2 OTTHUMG00000169472.1 +17903 chr12 HAVANA gene 46384233 46386991 562.0 - 0 ENSG00000257496.1 lincRNA AC025031.1 1 OTTHUMG00000169474.1 +17904 chr12 HAVANA gene 46388856 46392126 3271.0 + 0 ENSG00000275481.1 lincRNA AC025031.4 2 OTTHUMG00000187428.1 overlapping_locus +17905 chr12 HAVANA gene 46404644 46407166 2523.0 + 0 ENSG00000278896.1 TEC AC025031.5 2 OTTHUMG00000187429.1 overlapping_locus +17906 chr12 HAVANA gene 46592573 46593305 733.0 + 0 ENSG00000272963.1 unprocessed_pseudogene OR7A19P 2 OTTHUMG00000185953.1 +17907 chr12 HAVANA gene 46537502 46652550 448.0 + 0 ENSG00000272369.1 lincRNA AC008035.1 2 OTTHUMG00000185793.1 overlapping_locus +17908 chr12 HAVANA gene 46682071 46682713 643.0 - 0 ENSG00000271642.1 processed_pseudogene MARK3P1 1 OTTHUMG00000184790.1 pseudo_consens +17909 chr12 HAVANA gene 46764761 46832408 4145.0 - 0 ENSG00000139209.15 protein_coding SLC38A4 1 OTTHUMG00000169518.4 +17910 chr12 HAVANA gene 46383679 46876159 2227.0 + 0 ENSG00000257261.5 lincRNA AC008014.1 2 OTTHUMG00000169473.2 overlapping_locus +17911 chr12 HAVANA gene 46970504 46972155 815.0 + 0 ENSG00000274723.1 lincRNA AC079906.1 2 OTTHUMG00000187438.1 +17912 chr12 HAVANA gene 47075707 47079951 3956.0 - 0 ENSG00000139211.6 protein_coding AMIGO2 2 OTTHUMG00000169616.1 +17913 chr12 HAVANA gene 47135498 47138370 603.0 - 0 ENSG00000258352.1 transcribed_processed_pseudogene AC119044.1 1 OTTHUMG00000169618.2 pseudo_consens +17914 chr12 ENSEMBL gene 47187812 47187891 80.0 + 0 ENSG00000263838.1 miRNA MIR4698 3 +17915 chr12 HAVANA gene 47205898 47216456 3092.0 - 0 ENSG00000247774.6 processed_transcript PCED1B-AS1 2 OTTHUMG00000169619.1 +17916 chr12 HAVANA gene 47079603 47236662 2618.0 + 0 ENSG00000179715.12 protein_coding PCED1B 2 OTTHUMG00000169617.3 ncRNA_host,retrogene +17917 chr12 HAVANA gene 47248124 47257539 510.0 + 0 ENSG00000258181.1 lincRNA AC008083.2 2 OTTHUMG00000169661.1 +17918 chr12 HAVANA gene 47265665 47266108 444.0 + 0 ENSG00000276454.1 lincRNA AC008083.3 2 OTTHUMG00000187371.1 +17919 chr12 HAVANA gene 47237734 47279021 663.0 - 0 ENSG00000257925.1 antisense AC008083.1 2 OTTHUMG00000169660.1 +17920 chr12 HAVANA gene 47341614 47342089 476.0 - 0 ENSG00000258116.1 processed_pseudogene PPIAP45 1 OTTHUMG00000169662.1 pseudo_consens +17921 chr12 ENSEMBL gene 47346166 47346297 132.0 - 0 ENSG00000199566.1 snoRNA RF00264 3 +17922 chr12 ENSEMBL gene 47364186 47364269 84.0 - 0 ENSG00000264906.1 miRNA MIR4494 3 +17923 chr12 HAVANA gene 47353754 47369935 540.0 + 0 ENSG00000257924.1 lincRNA LINC02416 2 OTTHUMG00000169663.1 +17924 chr12 HAVANA gene 47377683 47420179 2607.0 + 0 ENSG00000257906.2 lincRNA LINC02156 2 OTTHUMG00000169664.3 +17925 chr12 HAVANA gene 47463087 47463621 470.0 + 0 ENSG00000258369.1 processed_pseudogene ADI1P3 2 OTTHUMG00000169665.1 +17926 chr12 HAVANA gene 47484689 47485722 1034.0 + 0 ENSG00000257807.1 processed_pseudogene AC003686.1 1 OTTHUMG00000169666.1 pseudo_consens +17927 chr12 HAVANA gene 47593208 47593440 233.0 + 0 ENSG00000257905.1 processed_pseudogene AC004486.1 1 OTTHUMG00000169667.1 pseudo_consens +17928 chr12 HAVANA gene 47699401 47699917 517.0 - 0 ENSG00000276390.1 sense_intronic AC004241.3 2 OTTHUMG00000187397.1 overlapping_locus +17929 chr12 HAVANA gene 47661249 47706061 5381.0 - 0 ENSG00000005175.9 protein_coding RPAP3 2 OTTHUMG00000169668.2 overlapping_locus +17930 chr12 HAVANA gene 47709734 47725567 2679.0 - 0 ENSG00000111405.8 protein_coding ENDOU 1 OTTHUMG00000169670.2 +17931 chr12 HAVANA gene 47728151 47730598 2448.0 - 0 ENSG00000280054.1 TEC AC004241.5 2 OTTHUMG00000187439.1 +17932 chr12 HAVANA gene 47731908 47732351 444.0 + 0 ENSG00000274902.1 lincRNA AC004241.2 2 OTTHUMG00000187373.2 overlapping_locus +17933 chr12 HAVANA gene 47706085 47742294 4411.0 + 0 ENSG00000257433.5 antisense AC004241.1 2 OTTHUMG00000169669.2 overlapping_locus +17934 chr12 HAVANA gene 47768529 47769648 1120.0 + 0 ENSG00000277173.1 sense_intronic AC004241.4 2 OTTHUMG00000187440.1 overlapping_locus +17935 chr12 HAVANA gene 47734367 47771040 12078.0 - 0 ENSG00000079337.15 protein_coding RAPGEF3 1 OTTHUMG00000133667.7 +17936 chr12 HAVANA gene 47753916 47782753 4921.0 + 0 ENSG00000211584.13 protein_coding SLC48A1 2 OTTHUMG00000156983.4 overlapping_locus +17937 chr12 HAVANA gene 47784923 47786002 1080.0 + 0 ENSG00000268069.2 antisense AC004466.1 2 OTTHUMG00000187385.2 +17938 chr12 HAVANA gene 47788426 47788971 546.0 + 0 ENSG00000276691.1 antisense AC004466.3 2 OTTHUMG00000187386.1 +17939 chr12 HAVANA gene 47817451 47817966 516.0 - 0 ENSG00000274737.1 sense_intronic AC004466.2 2 OTTHUMG00000187387.2 overlapping_locus +17940 chr12 HAVANA gene 47782722 47833132 9928.0 - 0 ENSG00000061273.17 protein_coding HDAC7 2 OTTHUMG00000152968.7 overlapping_locus +17941 chr12 HAVANA gene 47826854 47837898 944.0 + 0 ENSG00000257488.5 lincRNA LINC02354 2 OTTHUMG00000169889.1 +17942 chr12 HAVANA gene 47882649 47901525 1287.0 + 0 ENSG00000205537.2 antisense AC121338.1 2 OTTHUMG00000169891.1 +17943 chr12 HAVANA gene 47905122 47906865 1744.0 + 0 ENSG00000278385.1 lincRNA AC121338.2 2 OTTHUMG00000187441.1 +17944 chr12 HAVANA gene 47841537 47943048 5674.0 - 0 ENSG00000111424.10 protein_coding VDR 1 OTTHUMG00000169890.3 +17945 chr12 HAVANA gene 47960497 47963469 2973.0 - 0 ENSG00000279840.1 TEC AC004801.7 2 OTTHUMG00000187431.1 +17946 chr12 HAVANA gene 47963569 47968878 3475.0 + 0 ENSG00000134291.11 protein_coding TMEM106C 1 OTTHUMG00000169892.3 +17947 chr12 HAVANA gene 47972965 48004554 6664.0 - 0 ENSG00000139219.18 protein_coding COL2A1 2 OTTHUMG00000149896.6 +17948 chr12 HAVANA gene 48005277 48011227 1044.0 - 0 ENSG00000258203.5 lincRNA AC004801.5 2 OTTHUMG00000169893.1 +17949 chr12 HAVANA gene 48019771 48025382 962.0 - 0 ENSG00000257955.1 lincRNA AC004801.3 1 OTTHUMG00000169895.1 +17950 chr12 HAVANA gene 48011304 48025469 3112.0 + 0 ENSG00000257985.1 antisense AC004801.4 2 OTTHUMG00000169894.1 +17951 chr12 HAVANA gene 48039784 48040761 978.0 - 0 ENSG00000276814.1 lincRNA AC004801.6 2 OTTHUMG00000187396.2 +17952 chr12 HAVANA gene 48054813 48055591 779.0 - 0 ENSG00000240399.1 transcribed_processed_pseudogene AC004801.2 1 OTTHUMG00000157556.2 pseudo_consens,overlapping_locus +17953 chr12 ENSEMBL gene 48081319 48081428 110.0 + 0 ENSG00000222635.1 snRNA RNU6-1203P 3 +17954 chr12 HAVANA gene 48085062 48085421 360.0 + 0 ENSG00000226138.4 processed_pseudogene AC004801.1 1 OTTHUMG00000169897.1 pseudo_consens +17955 chr12 HAVANA gene 48042898 48106308 6342.0 - 0 ENSG00000079387.13 protein_coding SENP1 2 OTTHUMG00000169896.3 overlapping_locus +17956 chr12 ENSEMBL gene 48132797 48132867 71.0 + 0 ENSG00000275770.1 miRNA MIR6505 3 +17957 chr12 HAVANA gene 48105139 48146404 7284.0 + 0 ENSG00000152556.16 protein_coding PFKM 1 OTTHUMG00000169898.6 ncRNA_host +17958 chr12 HAVANA gene 48152817 48153128 312.0 + 0 ENSG00000274124.1 antisense AC074029.3 2 OTTHUMG00000187417.1 +17959 chr12 HAVANA gene 48160245 48160878 634.0 - 0 ENSG00000258051.1 processed_pseudogene AC074029.2 1 OTTHUMG00000169899.1 pseudo_consens,overlapping_locus +17960 chr12 HAVANA gene 48168847 48169659 813.0 - 0 ENSG00000257885.1 processed_pseudogene PHBP18 1 OTTHUMG00000169900.1 pseudo_consens,overlapping_locus +17961 chr12 HAVANA gene 48171590 48173353 1044.0 + 0 ENSG00000257848.1 processed_pseudogene AC074029.1 1 OTTHUMG00000169901.1 pseudo_consens +17962 chr12 HAVANA gene 48147788 48181213 4087.0 - 0 ENSG00000177981.10 protein_coding ASB8 1 OTTHUMG00000167834.3 overlapping_locus +17963 chr12 HAVANA gene 48183584 48185926 2343.0 + 0 ENSG00000177875.4 protein_coding CCDC184 2 OTTHUMG00000169902.1 +17964 chr12 HAVANA gene 48189349 48191207 1859.0 + 0 ENSG00000279875.1 TEC AC074029.4 2 OTTHUMG00000172903.1 +17965 chr12 HAVANA gene 48202083 48203387 1305.0 - 0 ENSG00000172640.3 protein_coding OR10AD1 2 OTTHUMG00000168027.2 +17966 chr12 HAVANA gene 48198357 48230275 6938.0 + 0 ENSG00000269514.2 antisense AC024257.3 2 OTTHUMG00000187444.2 +17967 chr12 HAVANA gene 48231098 48284210 566.0 - 0 ENSG00000258234.1 lincRNA AC024257.1 2 OTTHUMG00000169903.1 +17968 chr12 HAVANA gene 48327942 48328472 531.0 - 0 ENSG00000275228.1 lincRNA AC024257.5 2 OTTHUMG00000187393.1 +17969 chr12 HAVANA gene 48328980 48330279 1300.0 + 0 ENSG00000187166.1 protein_coding H1FNT 2 OTTHUMG00000169904.1 +17970 chr12 HAVANA gene 48333755 48333901 147.0 - 0 ENSG00000258273.1 unprocessed_pseudogene AC024257.2 2 OTTHUMG00000169905.1 +17971 chr12 HAVANA gene 48337180 48351414 8474.0 - 0 ENSG00000167528.12 protein_coding ZNF641 2 OTTHUMG00000169906.4 +17972 chr12 HAVANA gene 48355792 48356614 823.0 - 0 ENSG00000257763.1 unprocessed_pseudogene OR5BK1P 2 OTTHUMG00000170016.1 +17973 chr12 HAVANA gene 48360920 48361377 458.0 + 0 ENSG00000273765.1 lincRNA AC024257.4 2 OTTHUMG00000187391.1 overlapping_locus +17974 chr12 HAVANA gene 48385417 48386265 849.0 - 0 ENSG00000258024.1 unprocessed_pseudogene OR5BT1P 2 OTTHUMG00000170017.1 +17975 chr12 HAVANA gene 48394510 48395392 883.0 - 0 ENSG00000257792.1 unprocessed_pseudogene OR5BJ1P 2 OTTHUMG00000170018.1 +17976 chr12 HAVANA gene 48417150 48417337 188.0 - 0 ENSG00000273434.1 unprocessed_pseudogene OR8S21P 2 OTTHUMG00000185952.1 +17977 chr12 HAVANA gene 48350945 48442411 562.0 + 0 ENSG00000257735.1 antisense AC090115.1 2 OTTHUMG00000169907.2 overlapping_locus +17978 chr12 HAVANA gene 48442030 48442947 918.0 - 0 ENSG00000226413.2 unprocessed_pseudogene OR8T1P 2 OTTHUMG00000154311.2 +17979 chr12 HAVANA gene 48472665 48473624 960.0 + 0 ENSG00000139223.2 protein_coding ANP32D 2 OTTHUMG00000162681.3 +17980 chr12 HAVANA gene 48487946 48488408 463.0 + 0 ENSG00000240443.1 transcribed_processed_pseudogene RPS10P20 1 OTTHUMG00000157558.1 pseudo_consens,overlapping_locus +17981 chr12 HAVANA gene 48482498 48496386 1736.0 + 0 ENSG00000177627.10 protein_coding C12orf54 2 OTTHUMG00000170019.3 overlapping_locus +17982 chr12 HAVANA gene 48483287 48500961 588.0 - 0 ENSG00000258121.1 antisense AC089987.2 2 OTTHUMG00000170020.1 +17983 chr12 HAVANA gene 48525632 48528103 1131.0 + 0 ENSG00000284723.1 protein_coding OR8S1 2 OTTHUMG00000170021.4 +17984 chr12 HAVANA gene 48507354 48529897 3097.0 + 0 ENSG00000197376.3 transcribed_processed_pseudogene AC089987.1 1 OTTHUMG00000192323.1 pseudo_consens +17985 chr12 HAVANA gene 48559882 48562956 936.0 + 0 ENSG00000198678.5 protein_coding OR5BS1P 2 OTTHUMG00000170390.2 +17986 chr12 HAVANA gene 48567684 48570066 1247.0 - 0 ENSG00000167531.6 protein_coding LALBA 2 OTTHUMG00000170391.1 +17987 chr12 HAVANA gene 48627879 48628836 958.0 + 0 ENSG00000224709.2 unitary_pseudogene OR11M1P 2 OTTHUMG00000154301.2 +17988 chr12 ENSEMBL gene 48654382 48654518 137.0 - 0 ENSG00000221491.2 snoRNA SNORA2C 3 +17989 chr12 ENSEMBL gene 48654444 48654530 87.0 - 0 ENSG00000281842.2 miRNA MIR1291 3 +17990 chr12 ENSEMBL gene 48656648 48656782 135.0 - 0 ENSG00000206612.1 snoRNA SNORA2A 3 +17991 chr12 ENSEMBL gene 48667457 48667593 137.0 - 0 ENSG00000207313.1 snoRNA SNORA2B 3 +17992 chr12 HAVANA gene 48653401 48682238 3386.0 - 0 ENSG00000139620.12 protein_coding KANSL2 1 OTTHUMG00000170392.3 ncRNA_host +17993 chr12 HAVANA gene 48688458 48716998 7381.0 - 0 ENSG00000129315.10 protein_coding CCNT1 2 OTTHUMG00000170393.1 +17994 chr12 HAVANA gene 48727435 48765786 658.0 + 0 ENSG00000257987.5 protein_coding TEX49 2 OTTHUMG00000170394.2 +17995 chr12 HAVANA gene 48766194 48767323 713.0 + 0 ENSG00000257653.1 antisense AC117498.1 2 OTTHUMG00000170395.1 +17996 chr12 ENSEMBL gene 48771975 48772037 63.0 - 0 ENSG00000264201.1 miRNA MIR4701 3 +17997 chr12 HAVANA gene 48766194 48789037 8410.0 - 0 ENSG00000174233.11 protein_coding ADCY6 2 OTTHUMG00000170396.2 ncRNA_host +17998 chr12 HAVANA gene 48789147 48790535 554.0 + 0 ENSG00000257660.5 lincRNA AC117498.2 2 OTTHUMG00000170397.1 +17999 chr12 HAVANA gene 48800576 48801086 511.0 - 0 ENSG00000271547.1 processed_pseudogene AC117498.3 1 OTTHUMG00000184789.1 pseudo_consens +18000 chr12 ENSEMBL gene 48809911 48810016 106.0 + 0 ENSG00000207467.1 misc_RNA RF00019 3 +18001 chr12 HAVANA gene 48813794 48828941 7153.0 + 0 ENSG00000167535.7 protein_coding CACNB3 1 OTTHUMG00000170398.2 +18002 chr12 HAVANA gene 48829764 48852842 5419.0 - 0 ENSG00000174243.9 protein_coding DDX23 2 OTTHUMG00000170399.3 +18003 chr12 HAVANA gene 48857145 48865898 3976.0 - 0 ENSG00000172602.10 protein_coding RND1 2 OTTHUMG00000170400.4 +18004 chr12 ENSEMBL gene 48892130 48892228 99.0 - 0 ENSG00000199394.1 snRNA RNU6-600P 3 +18005 chr12 HAVANA gene 48903418 48903813 396.0 - 0 ENSG00000239617.1 processed_pseudogene AC073610.1 2 OTTHUMG00000157559.1 overlapping_locus +18006 chr12 HAVANA gene 48921518 48926474 4957.0 - 0 ENSG00000134285.10 protein_coding FKBP11 1 OTTHUMG00000170402.2 overlapping_locus +18007 chr12 HAVANA gene 48904110 48931840 2373.0 + 0 ENSG00000139537.10 protein_coding CCDC65 2 OTTHUMG00000170401.1 +18008 chr12 HAVANA gene 48921963 48939663 406.0 - 0 ENSG00000255863.2 protein_coding AC073610.2 2 OTTHUMG00000133766.4 overlapping_locus +18009 chr12 HAVANA gene 48903503 48957365 939.0 - 0 ENSG00000272822.1 protein_coding AC073610.3 2 OTTHUMG00000186497.1 overlapping_locus +18010 chr12 HAVANA gene 48935723 48957551 5002.0 - 0 ENSG00000134287.9 protein_coding ARF3 1 OTTHUMG00000168080.2 overlapping_locus +18011 chr12 HAVANA gene 48965340 48971763 2629.0 - 0 ENSG00000169884.13 protein_coding WNT10B 2 OTTHUMG00000150734.3 +18012 chr12 ENSEMBL gene 48975543 48975646 104.0 + 0 ENSG00000200303.1 snRNA RNU6-940P 3 +18013 chr12 HAVANA gene 48978453 48981676 1347.0 + 0 ENSG00000125084.11 protein_coding WNT1 2 OTTHUMG00000170403.1 +18014 chr12 HAVANA gene 48995150 48996334 279.0 + 0 ENSG00000258283.1 antisense AC011603.3 2 OTTHUMG00000170404.1 +18015 chr12 HAVANA gene 48995149 48999309 3749.0 - 0 ENSG00000181418.7 protein_coding DDN 2 OTTHUMG00000156183.1 +18016 chr12 HAVANA gene 49002274 49018825 4184.0 - 0 ENSG00000181929.12 protein_coding PRKAG1 1 OTTHUMG00000170406.3 overlapping_locus +18017 chr12 HAVANA gene 48998367 49019235 2238.0 + 0 ENSG00000257913.2 antisense DDN-AS1 2 OTTHUMG00000170405.2 +18018 chr12 HAVANA gene 49018975 49059774 20476.0 - 0 ENSG00000167548.15 protein_coding KMT2D 1 OTTHUMG00000166524.4 overlapping_locus +18019 chr12 HAVANA gene 49064685 49070025 1290.0 - 0 ENSG00000167550.10 protein_coding RHEBL1 2 OTTHUMG00000170407.2 +18020 chr12 HAVANA gene 49075039 49075802 277.0 + 0 ENSG00000277672.1 processed_pseudogene AC011603.4 2 OTTHUMG00000187915.1 +18021 chr12 HAVANA gene 49090208 49093312 839.0 + 0 ENSG00000257346.1 antisense AC011603.1 2 OTTHUMG00000170409.1 +18022 chr12 HAVANA gene 49086656 49094819 4701.0 - 0 ENSG00000139549.3 protein_coding DHH 2 OTTHUMG00000170408.2 +18023 chr12 HAVANA gene 49096551 49110900 6047.0 - 0 ENSG00000139636.15 protein_coding LMBR1L 1 OTTHUMG00000150511.4 +18024 chr12 HAVANA gene 49127782 49131397 3574.0 - 0 ENSG00000123416.15 protein_coding TUBA1B 1 OTTHUMG00000170410.2 +18025 chr12 ENSEMBL gene 49132853 49132947 95.0 - 0 ENSG00000200309.1 misc_RNA RF00019 3 +18026 chr12 HAVANA gene 49127782 49147869 1632.0 + 0 ENSG00000258017.1 antisense AC011603.2 2 OTTHUMG00000170411.1 +18027 chr12 HAVANA gene 49184796 49189324 3421.0 - 0 ENSG00000167552.13 protein_coding TUBA1A 1 OTTHUMG00000169511.3 +18028 chr12 ENSEMBL gene 49196784 49197062 279.0 + 0 ENSG00000274017.1 misc_RNA RF00017 3 +18029 chr12 HAVANA gene 49232790 49264756 1453.0 - 0 ENSG00000258101.2 antisense AC010173.1 2 OTTHUMG00000169512.2 +18030 chr12 HAVANA gene 49265156 49273306 680.0 - 0 ENSG00000258232.2 antisense AC125611.3 2 OTTHUMG00000169513.2 +18031 chr12 HAVANA gene 49188736 49274603 4631.0 + 0 ENSG00000167553.15 protein_coding TUBA1C 2 OTTHUMG00000169497.4 ncRNA_host +18032 chr12 HAVANA gene 49293252 49298686 4353.0 + 0 ENSG00000135406.13 protein_coding PRPH 1 OTTHUMG00000167140.7 +18033 chr12 HAVANA gene 49292631 49324576 4166.0 - 0 ENSG00000258334.1 antisense AC125611.4 2 OTTHUMG00000169733.1 +18034 chr12 HAVANA gene 49323236 49331731 3954.0 + 0 ENSG00000135451.12 protein_coding TROAP 2 OTTHUMG00000169486.3 +18035 chr12 HAVANA gene 49332411 49337188 2071.0 - 0 ENSG00000186897.4 protein_coding C1QL4 2 OTTHUMG00000169515.2 +18036 chr12 HAVANA gene 49346917 49357546 5006.0 + 0 ENSG00000178401.15 protein_coding DNAJC22 2 OTTHUMG00000169487.6 +18037 chr12 HAVANA gene 49389516 49390162 647.0 + 0 ENSG00000257954.1 processed_pseudogene AC125611.2 1 OTTHUMG00000169734.1 pseudo_consens,overlapping_locus +18038 chr12 HAVANA gene 49442424 49442652 229.0 - 0 ENSG00000257464.1 processed_pseudogene AC125611.1 2 OTTHUMG00000169516.1 +18039 chr12 HAVANA gene 49366584 49527424 6840.0 + 0 ENSG00000123352.17 protein_coding SPATS2 1 OTTHUMG00000169419.11 overlapping_locus +18040 chr12 HAVANA gene 49539157 49558308 4265.0 + 0 ENSG00000135519.7 protein_coding KCNH3 2 OTTHUMG00000169517.5 +18041 chr12 HAVANA gene 49556544 49568153 3269.0 - 0 ENSG00000187778.13 protein_coding MCRS1 1 OTTHUMG00000169620.5 +18042 chr12 HAVANA gene 49576840 49577505 570.0 - 0 ENSG00000257964.1 antisense AC020612.3 2 OTTHUMG00000169650.1 +18043 chr12 ENSEMBL gene 49593104 49593213 110.0 + 0 ENSG00000199237.1 snRNA RNU6-834P 3 +18044 chr12 HAVANA gene 49594091 49594258 168.0 + 0 ENSG00000258284.1 processed_pseudogene POLR2KP1 1 OTTHUMG00000169587.1 pseudo_consens,overlapping_locus +18045 chr12 HAVANA gene 49595148 49595688 541.0 + 0 ENSG00000257243.1 processed_pseudogene AC020612.1 1 OTTHUMG00000169588.1 pseudo_consens,overlapping_locus +18046 chr12 HAVANA gene 49582885 49605639 4756.0 - 0 ENSG00000135436.8 protein_coding FAM186B 2 OTTHUMG00000167427.3 +18047 chr12 HAVANA gene 49619334 49619612 279.0 + 0 ENSG00000258104.1 processed_pseudogene HIGD1AP9 1 OTTHUMG00000169589.1 pseudo_consens,overlapping_locus +18048 chr12 HAVANA gene 49568218 49644666 9444.0 + 0 ENSG00000110844.13 protein_coding PRPF40B 2 OTTHUMG00000169568.7 ncRNA_host,overlapping_locus +18049 chr12 HAVANA gene 49636499 49708165 13424.0 - 0 ENSG00000161791.13 protein_coding FMNL3 2 OTTHUMG00000169651.5 +18050 chr12 HAVANA gene 49709237 49709336 100.0 + 0 ENSG00000257570.1 processed_pseudogene AC020612.2 1 OTTHUMG00000169653.1 pseudo_consens,overlapping_locus +18051 chr12 HAVANA gene 49707725 49764934 6186.0 + 0 ENSG00000139644.12 protein_coding TMBIM6 2 OTTHUMG00000169652.8 overlapping_locus +18052 chr12 HAVANA gene 49770960 49771136 177.0 + 0 ENSG00000257730.1 processed_pseudogene LSM6P2 1 OTTHUMG00000169654.1 pseudo_consens +18053 chr12 HAVANA gene 49791146 49828750 8090.0 - 0 ENSG00000167566.16 protein_coding NCKAP5L 2 OTTHUMG00000156969.3 +18054 chr12 HAVANA gene 49828542 49841143 3586.0 + 0 ENSG00000258057.5 antisense BCDIN3D-AS1 2 OTTHUMG00000169706.2 +18055 chr12 HAVANA gene 49836039 49843129 3721.0 - 0 ENSG00000186666.5 protein_coding BCDIN3D 1 OTTHUMG00000169807.3 +18056 chr12 HAVANA gene 49863173 49863503 331.0 + 0 ENSG00000242041.1 processed_pseudogene RPL35AP28 1 OTTHUMG00000157566.1 pseudo_consens,overlapping_locus +18057 chr12 HAVANA gene 49861207 49865802 722.0 + 0 ENSG00000257253.2 lincRNA AC131157.1 2 OTTHUMG00000169707.2 overlapping_locus +18058 chr12 HAVANA gene 49866896 49904217 6057.0 - 0 ENSG00000135472.8 protein_coding FAIM2 2 OTTHUMG00000169808.4 +18059 chr12 HAVANA gene 49908882 49911863 2459.0 - 0 ENSG00000258135.5 lincRNA LINC02396 2 OTTHUMG00000169809.2 +18060 chr12 HAVANA gene 49911953 49930320 4701.0 + 0 ENSG00000257771.5 lincRNA LINC02395 2 OTTHUMG00000169708.2 +18061 chr12 HAVANA gene 49954639 49956125 560.0 - 0 ENSG00000257378.1 antisense AC025154.1 2 OTTHUMG00000170041.1 overlapping_locus +18062 chr12 HAVANA gene 49950741 49958881 4305.0 + 0 ENSG00000167580.7 protein_coding AQP2 2 OTTHUMG00000169709.2 +18063 chr12 HAVANA gene 49951512 49962924 1574.0 - 0 ENSG00000257588.1 antisense AC025154.2 2 OTTHUMG00000169810.1 overlapping_locus +18064 chr12 HAVANA gene 49961870 49965681 1885.0 + 0 ENSG00000161798.6 protein_coding AQP5 2 OTTHUMG00000169710.2 +18065 chr12 HAVANA gene 49967194 49977139 5129.0 + 0 ENSG00000086159.12 protein_coding AQP6 1 OTTHUMG00000133548.3 +18066 chr12 HAVANA gene 49976923 50033136 4487.0 - 0 ENSG00000161800.12 protein_coding RACGAP1 1 OTTHUMG00000169811.6 +18067 chr12 HAVANA gene 50057548 50083611 5745.0 + 0 ENSG00000110881.11 protein_coding ASIC1 1 OTTHUMG00000169812.3 +18068 chr12 HAVANA gene 50084972 50100712 5136.0 + 0 ENSG00000066117.14 protein_coding SMARCD1 1 OTTHUMG00000150194.4 +18069 chr12 HAVANA gene 50103819 50111319 3991.0 + 0 ENSG00000167588.12 protein_coding GPD1 2 OTTHUMG00000169813.5 +18070 chr12 HAVANA gene 50111979 50120457 1073.0 + 0 ENSG00000178449.8 protein_coding COX14 2 OTTHUMG00000185635.1 overlapping_locus +18071 chr12 HAVANA gene 50112197 50165618 1117.0 + 0 ENSG00000272368.2 antisense AC074032.1 2 OTTHUMG00000170084.2 overlapping_locus +18072 chr12 HAVANA gene 50129306 50167533 6749.0 - 0 ENSG00000139624.12 protein_coding CERS5 1 OTTHUMG00000169819.9 +18073 chr12 HAVANA gene 50185580 50191363 4713.0 - 0 ENSG00000257298.1 sense_intronic AC008147.2 2 OTTHUMG00000169883.1 overlapping_locus +18074 chr12 HAVANA gene 50217662 50218343 354.0 - 0 ENSG00000257531.2 transcribed_processed_pseudogene AC008147.3 1 OTTHUMG00000169884.2 pseudo_consens,overlapping_locus +18075 chr12 HAVANA gene 50219604 50229984 325.0 + 0 ENSG00000257256.1 antisense AC008147.1 2 OTTHUMG00000170102.1 +18076 chr12 ENSEMBL gene 50234142 50234212 71.0 - 0 ENSG00000221604.1 miRNA MIR1293 3 +18077 chr12 ENSEMBL gene 50256238 50256344 107.0 - 0 ENSG00000212496.1 snRNA RNU6-1093P 3 +18078 chr12 HAVANA gene 50175788 50283546 6317.0 - 0 ENSG00000050405.13 protein_coding LIMA1 2 OTTHUMG00000169852.6 ncRNA_host,overlapping_locus +18079 chr12 HAVANA gene 50286244 50289231 1204.0 + 0 ENSG00000278842.1 processed_pseudogene AC008147.4 2 OTTHUMG00000187920.1 +18080 chr12 HAVANA gene 50365652 50366086 435.0 + 0 ENSG00000244266.1 processed_pseudogene AC090058.1 1 OTTHUMG00000157568.1 pseudo_consens +18081 chr12 HAVANA gene 50326230 50396622 8296.0 - 0 ENSG00000185958.9 protein_coding FAM186A 2 OTTHUMG00000167889.1 +18082 chr12 HAVANA gene 50392383 50480004 8112.0 + 0 ENSG00000161813.21 protein_coding LARP4 1 OTTHUMG00000163724.13 +18083 chr12 ENSEMBL gene 50633273 50633376 104.0 + 0 ENSG00000207136.1 snRNA RNU6-769P 3 +18084 chr12 ENSEMBL gene 50656973 50657078 106.0 + 0 ENSG00000200183.1 snRNA RNU6-238P 3 +18085 chr12 ENSEMBL gene 50743568 50743684 117.0 + 0 ENSG00000200428.1 misc_RNA RF00019 3 +18086 chr12 HAVANA gene 50504985 50748667 10361.0 + 0 ENSG00000066084.12 protein_coding DIP2B 2 OTTHUMG00000169475.3 ncRNA_host +18087 chr12 HAVANA gene 50756892 50757433 193.0 + 0 ENSG00000271018.1 processed_pseudogene AC013244.1 1 OTTHUMG00000184757.1 pseudo_consens +18088 chr12 HAVANA gene 50806335 50806437 103.0 - 0 ENSG00000271490.1 processed_pseudogene AC013244.2 1 OTTHUMG00000184780.1 pseudo_consens +18089 chr12 HAVANA gene 50763710 50821122 2790.0 + 0 ENSG00000123268.8 protein_coding ATF1 2 OTTHUMG00000169482.2 +18090 chr12 ENSEMBL gene 50841498 50841785 288.0 - 0 ENSG00000243075.3 misc_RNA RN7SL519P 3 +18091 chr12 HAVANA gene 50847925 50848312 388.0 - 0 ENSG00000271621.1 processed_pseudogene AC013244.3 1 OTTHUMG00000184777.1 pseudo_consens +18092 chr12 HAVANA gene 50842920 50887884 3336.0 + 0 ENSG00000186452.10 protein_coding TMPRSS12 2 OTTHUMG00000169483.1 +18093 chr12 HAVANA gene 50923472 50932517 4083.0 + 0 ENSG00000185432.11 protein_coding METTL7A 2 OTTHUMG00000169484.3 +18094 chr12 HAVANA gene 50934942 50935464 523.0 - 0 ENSG00000274156.1 lincRNA AC008121.2 2 OTTHUMG00000187369.1 +18095 chr12 ENSEMBL gene 50939927 50940026 100.0 - 0 ENSG00000199740.1 misc_RNA RF00019 3 +18096 chr12 HAVANA gene 50949117 50949384 268.0 - 0 ENSG00000271596.1 processed_pseudogene AC008121.1 1 OTTHUMG00000184776.1 pseudo_consens +18097 chr12 HAVANA gene 50953924 50954356 433.0 - 0 ENSG00000274797.1 antisense AC008121.3 2 OTTHUMG00000187367.1 +18098 chr12 HAVANA gene 50953922 50970506 371.0 + 0 ENSG00000214511.3 protein_coding HIGD1C 2 OTTHUMG00000169488.3 +18099 chr12 ENSEMBL gene 51014134 51014241 108.0 - 0 ENSG00000272028.1 snRNA RNU6-87P 3 +18100 chr12 HAVANA gene 50979401 51028566 9823.0 - 0 ENSG00000110911.15 protein_coding SLC11A2 1 OTTHUMG00000169493.10 ncRNA_host +18101 chr12 ENSEMBL gene 51037499 51037602 104.0 + 0 ENSG00000199903.1 snRNA RNU6-1273P 3 +18102 chr12 HAVANA gene 51047962 51060424 6032.0 + 0 ENSG00000050426.15 protein_coding LETMD1 1 OTTHUMG00000169538.4 +18103 chr12 HAVANA gene 51061205 51083664 5230.0 - 0 ENSG00000110925.6 protein_coding CSRNP2 1 OTTHUMG00000169578.6 +18104 chr12 HAVANA gene 51106817 51107144 328.0 + 0 ENSG00000244540.2 processed_pseudogene AC087884.1 1 OTTHUMG00000157569.2 pseudo_consens +18105 chr12 HAVANA gene 51124628 51125381 754.0 - 0 ENSG00000257246.1 processed_pseudogene PHBP19 1 OTTHUMG00000169648.1 pseudo_consens,overlapping_locus +18106 chr12 ENSEMBL gene 51156868 51156977 110.0 - 0 ENSG00000200953.1 misc_RNA RF00019 3 +18107 chr12 ENSEMBL gene 51162901 51163007 107.0 + 0 ENSG00000199824.1 snRNA RNU6-199P 3 +18108 chr12 HAVANA gene 51093663 51173134 3827.0 - 0 ENSG00000135457.9 protein_coding TFCP2 2 OTTHUMG00000169621.2 ncRNA_host,overlapping_locus +18109 chr12 HAVANA gene 51201684 51202581 898.0 - 0 ENSG00000278126.1 sense_intronic AC139768.1 2 OTTHUMG00000187368.1 overlapping_locus +18110 chr12 HAVANA gene 51186936 51217708 6048.0 - 0 ENSG00000184271.17 protein_coding POU6F1 2 OTTHUMG00000169622.5 overlapping_locus +18111 chr12 HAVANA gene 51244558 51270890 3558.0 - 0 ENSG00000170545.16 protein_coding SMAGP 2 OTTHUMG00000185196.2 +18112 chr12 HAVANA gene 51238292 51271362 5731.0 + 0 ENSG00000183283.15 protein_coding DAZAP2 2 OTTHUMG00000169649.6 +18113 chr12 HAVANA gene 51281038 51324668 4010.0 - 0 ENSG00000110934.10 protein_coding BIN2 1 OTTHUMG00000185197.2 +18114 chr12 HAVANA gene 51328443 51346679 952.0 - 0 ENSG00000139610.1 protein_coding CELA1 2 OTTHUMG00000167523.1 +18115 chr12 HAVANA gene 51351247 51392867 7347.0 - 0 ENSG00000139629.15 protein_coding GALNT6 2 OTTHUMG00000185181.3 +18116 chr12 HAVANA gene 51421956 51424611 347.0 - 0 ENSG00000271065.1 antisense AC107031.1 2 OTTHUMG00000185219.1 +18117 chr12 HAVANA gene 51391317 51515763 17980.0 + 0 ENSG00000050438.16 protein_coding SLC4A8 2 OTTHUMG00000169489.5 +18118 chr12 HAVANA gene 51712469 51713606 1138.0 - 0 ENSG00000257851.2 processed_pseudogene HNRNPA3P10 1 OTTHUMG00000169491.2 pseudo_consens +18119 chr12 HAVANA gene 51809705 51810600 896.0 - 0 ENSG00000260122.1 lincRNA AC068987.2 2 OTTHUMG00000172897.1 +18120 chr12 HAVANA gene 51590266 51812864 14935.0 + 0 ENSG00000196876.15 protein_coding SCN8A 1 OTTHUMG00000169490.10 +18121 chr12 HAVANA gene 51813940 51814926 987.0 - 0 ENSG00000284730.1 protein_coding AC068987.5 2 OTTHUMG00000192217.1 +18122 chr12 HAVANA gene 51817899 51820150 2094.0 + 0 ENSG00000261586.2 lincRNA AC068987.4 2 OTTHUMG00000175692.2 +18123 chr12 HAVANA gene 51815043 51842106 2154.0 + 0 ENSG00000260473.2 lincRNA AC068987.3 2 OTTHUMG00000172913.2 +18124 chr12 HAVANA gene 51817840 51848766 4973.0 - 0 ENSG00000261308.2 protein_coding FIGNL2 2 OTTHUMG00000175693.2 +18125 chr12 HAVANA gene 51848223 51852729 427.0 + 0 ENSG00000259887.1 lincRNA AC068987.1 2 OTTHUMG00000172914.1 +18126 chr12 HAVANA gene 51887960 51891664 3705.0 + 0 ENSG00000167612.12 protein_coding ANKRD33 1 OTTHUMG00000169506.1 +18127 chr12 HAVANA gene 51900565 51901336 772.0 + 0 ENSG00000258021.1 processed_pseudogene AC025259.2 1 OTTHUMG00000169594.1 pseudo_consens +18128 chr12 HAVANA gene 51906908 51923361 5040.0 + 0 ENSG00000139567.12 protein_coding ACVRL1 1 OTTHUMG00000169507.4 +18129 chr12 ENSEMBL gene 51987657 51987763 107.0 + 0 ENSG00000206992.1 snRNA RNU6-574P 3 +18130 chr12 HAVANA gene 51951667 51997078 5690.0 + 0 ENSG00000135503.12 protein_coding ACVR1B 1 OTTHUMG00000167920.4 ncRNA_host +18131 chr12 HAVANA gene 52006940 52015889 2829.0 + 0 ENSG00000161835.10 protein_coding GRASP 2 OTTHUMG00000169595.3 +18132 chr12 HAVANA gene 52058459 52059503 915.0 - 0 ENSG00000259884.1 lincRNA AC025259.3 2 OTTHUMG00000175694.1 +18133 chr12 HAVANA gene 52022832 52059507 7295.0 + 0 ENSG00000123358.19 protein_coding NR4A1 1 OTTHUMG00000150393.7 +18134 chr12 HAVANA gene 52069246 52077494 3199.0 + 0 ENSG00000123395.14 protein_coding ATG101 2 OTTHUMG00000169611.3 +18135 chr12 HAVANA gene 52076841 52082084 647.0 - 0 ENSG00000257663.1 antisense AC025259.1 2 OTTHUMG00000169612.1 +18136 chr12 HAVANA gene 52092485 52104297 512.0 - 0 ENSG00000257989.1 lincRNA AC078864.1 2 OTTHUMG00000169614.1 +18137 chr12 HAVANA gene 52079696 52108239 1422.0 + 0 ENSG00000284791.1 protein_coding OR7E47P 2 OTTHUMG00000169615.4 overlapping_locus +18138 chr12 HAVANA gene 52084744 52108261 1505.0 + 0 ENSG00000257542.5 transcribed_unprocessed_pseudogene OR7E47P 1 OTTHUMG00000185956.2 pseudo_consens,overlapping_locus +18139 chr12 HAVANA gene 52168996 52192000 4350.0 - 0 ENSG00000167767.13 protein_coding KRT80 2 OTTHUMG00000150193.1 +18140 chr12 HAVANA gene 52205556 52213583 1940.0 - 0 ENSG00000257137.6 lincRNA C12orf80 2 OTTHUMG00000169626.2 +18141 chr12 HAVANA gene 52164115 52223804 1457.0 + 0 ENSG00000258279.3 lincRNA LINC00592 2 OTTHUMG00000169627.3 +18142 chr12 HAVANA gene 52229093 52229588 496.0 - 0 ENSG00000257649.1 processed_pseudogene METTL7AP1 2 OTTHUMG00000169628.1 +18143 chr12 HAVANA gene 52245048 52247448 1693.0 - 0 ENSG00000257671.1 antisense KRT7-AS 2 OTTHUMG00000169581.1 +18144 chr12 HAVANA gene 52232520 52252186 4093.0 + 0 ENSG00000135480.15 protein_coding KRT7 1 OTTHUMG00000169580.1 overlapping_locus +18145 chr12 HAVANA gene 52250466 52258867 1778.0 - 0 ENSG00000135477.11 transcribed_unprocessed_pseudogene KRT87P 2 OTTHUMG00000165548.1 +18146 chr12 HAVANA gene 52263948 52267461 685.0 + 0 ENSG00000284883.1 unprocessed_pseudogene AC021066.2 2 OTTHUMG00000192551.1 +18147 chr12 HAVANA gene 52275821 52277736 323.0 + 0 ENSG00000285102.1 transcribed_unprocessed_pseudogene AC021066.3 2 OTTHUMG00000192552.1 overlapping_locus +18148 chr12 HAVANA gene 52274647 52279156 647.0 - 0 ENSG00000257830.1 antisense AC021066.1 2 OTTHUMG00000169629.1 +18149 chr12 HAVANA gene 52285913 52291534 1929.0 - 0 ENSG00000205426.10 protein_coding KRT81 2 OTTHUMG00000167574.2 +18150 chr12 HAVANA gene 52306616 52308371 624.0 - 0 ENSG00000257829.1 antisense AC121757.1 2 OTTHUMG00000169631.1 +18151 chr12 HAVANA gene 52249300 52309163 2394.0 + 0 ENSG00000170442.11 protein_coding KRT86 2 OTTHUMG00000184153.4 overlapping_locus +18152 chr12 HAVANA gene 52314301 52321398 1875.0 - 0 ENSG00000170523.3 protein_coding KRT83 2 OTTHUMG00000169632.1 +18153 chr12 HAVANA gene 52341197 52354036 1493.0 + 0 ENSG00000274928.6 transcribed_unprocessed_pseudogene KRT89P 2 OTTHUMG00000187921.4 +18154 chr12 HAVANA gene 52360006 52367481 2713.0 - 0 ENSG00000135443.8 protein_coding KRT85 2 OTTHUMG00000169633.1 +18155 chr12 HAVANA gene 52377812 52385652 2092.0 - 0 ENSG00000161849.3 protein_coding KRT84 2 OTTHUMG00000169634.1 +18156 chr12 HAVANA gene 52380460 52402407 562.0 + 0 ENSG00000258253.1 antisense AC078865.1 2 OTTHUMG00000169635.1 +18157 chr12 HAVANA gene 52393931 52406355 2664.0 - 0 ENSG00000161850.2 protein_coding KRT82 2 OTTHUMG00000169636.1 +18158 chr12 HAVANA gene 52411742 52421867 1064.0 - 0 ENSG00000257844.2 unprocessed_pseudogene KRT90P 2 OTTHUMG00000169770.2 +18159 chr12 HAVANA gene 52407580 52428494 629.0 + 0 ENSG00000257500.1 antisense AC055736.1 2 OTTHUMG00000169769.1 +18160 chr12 HAVANA gene 52424070 52434525 2324.0 - 0 ENSG00000170454.5 protein_coding KRT75 2 OTTHUMG00000169592.1 +18161 chr12 HAVANA gene 52446651 52452126 2282.0 - 0 ENSG00000185479.5 protein_coding KRT6B 2 OTTHUMG00000169593.1 +18162 chr12 HAVANA gene 52468516 52473785 2896.0 - 0 ENSG00000170465.9 protein_coding KRT6C 2 OTTHUMG00000169596.1 +18163 chr12 HAVANA gene 52487174 52493257 2928.0 - 0 ENSG00000205420.10 protein_coding KRT6A 2 OTTHUMG00000169597.2 +18164 chr12 HAVANA gene 52514575 52520687 4292.0 - 0 ENSG00000186081.11 protein_coding KRT5 2 OTTHUMG00000169657.3 +18165 chr12 HAVANA gene 52543909 52553147 2265.0 - 0 ENSG00000139648.6 protein_coding KRT71 2 OTTHUMG00000167831.1 +18166 chr12 HAVANA gene 52565782 52573825 2988.0 - 0 ENSG00000170484.9 protein_coding KRT74 2 OTTHUMG00000169658.1 +18167 chr12 HAVANA gene 52585589 52601538 2154.0 - 0 ENSG00000170486.10 protein_coding KRT72 2 OTTHUMG00000169744.2 +18168 chr12 HAVANA gene 52601467 52615305 4094.0 + 0 ENSG00000257495.5 antisense KRT73-AS1 2 OTTHUMG00000169745.1 +18169 chr12 HAVANA gene 52607570 52618559 2652.0 - 0 ENSG00000186049.8 protein_coding KRT73 2 OTTHUMG00000169746.1 +18170 chr12 HAVANA gene 52632866 52634456 663.0 - 0 ENSG00000258120.1 unprocessed_pseudogene KRT128P 2 OTTHUMG00000169747.1 +18171 chr12 HAVANA gene 52644558 52652164 2522.0 - 0 ENSG00000172867.3 protein_coding KRT2 2 OTTHUMG00000169748.1 +18172 chr12 HAVANA gene 52674736 52680407 2488.0 - 0 ENSG00000167768.4 protein_coding KRT1 2 OTTHUMG00000169749.1 +18173 chr12 HAVANA gene 52692605 52696788 761.0 + 0 ENSG00000257700.1 antisense AC055716.3 2 OTTHUMG00000169750.1 +18174 chr12 HAVANA gene 52689626 52703463 3952.0 - 0 ENSG00000189182.9 protein_coding KRT77 2 OTTHUMG00000169450.2 +18175 chr12 HAVANA gene 52715567 52721655 1181.0 - 0 ENSG00000257402.2 unprocessed_pseudogene KRT126P 2 OTTHUMG00000169751.2 +18176 chr12 HAVANA gene 52730425 52732865 2441.0 + 0 ENSG00000257616.1 processed_pseudogene AC055716.2 1 OTTHUMG00000169752.1 pseudo_consens +18177 chr12 HAVANA gene 52729517 52736142 989.0 - 0 ENSG00000258036.2 unprocessed_pseudogene KRT125P 2 OTTHUMG00000169753.2 +18178 chr12 HAVANA gene 52746596 52748308 495.0 - 0 ENSG00000257343.1 unprocessed_pseudogene AC055716.1 2 OTTHUMG00000169766.1 +18179 chr12 HAVANA gene 52748776 52750127 1352.0 + 0 ENSG00000257675.1 processed_pseudogene BTBD10P1 1 OTTHUMG00000169767.1 pseudo_consens +18180 chr12 HAVANA gene 52751978 52753821 433.0 - 0 ENSG00000257125.1 unprocessed_pseudogene KRT127P 2 OTTHUMG00000169768.1 +18181 chr12 HAVANA gene 52763405 52763893 489.0 + 0 ENSG00000258071.1 processed_pseudogene ARL2BPP2 1 OTTHUMG00000169796.1 pseudo_consens +18182 chr12 HAVANA gene 52768155 52777345 2529.0 - 0 ENSG00000185069.2 protein_coding KRT76 2 OTTHUMG00000169797.1 +18183 chr12 HAVANA gene 52782650 52782839 190.0 + 0 ENSG00000257404.1 processed_pseudogene AC107016.2 1 OTTHUMG00000169798.1 pseudo_consens +18184 chr12 HAVANA gene 52789685 52796117 2319.0 - 0 ENSG00000186442.7 protein_coding KRT3 2 OTTHUMG00000169799.1 +18185 chr12 HAVANA gene 52806549 52814551 3312.0 - 0 ENSG00000170477.12 protein_coding KRT4 2 OTTHUMG00000169800.1 +18186 chr12 HAVANA gene 52821410 52834295 2542.0 - 0 ENSG00000185640.5 protein_coding KRT79 2 OTTHUMG00000169878.1 +18187 chr12 HAVANA gene 52837403 52837739 337.0 + 0 ENSG00000257389.1 processed_pseudogene AC107016.1 1 OTTHUMG00000169879.1 pseudo_consens +18188 chr12 HAVANA gene 52837804 52849092 3260.0 - 0 ENSG00000170423.12 protein_coding KRT78 2 OTTHUMG00000169880.2 +18189 chr12 HAVANA gene 52885429 52886385 957.0 + 0 ENSG00000241146.1 processed_pseudogene RPL7P41 1 OTTHUMG00000157570.1 pseudo_consens +18190 chr12 HAVANA gene 52897187 52949954 6881.0 - 0 ENSG00000170421.12 protein_coding KRT8 1 OTTHUMG00000169881.7 +18191 chr12 HAVANA gene 52948871 52952901 3218.0 + 0 ENSG00000111057.10 protein_coding KRT18 2 OTTHUMG00000169882.2 +18192 chr12 HAVANA gene 53012104 53013921 536.0 + 0 ENSG00000257475.2 sense_intronic AC068888.2 2 OTTHUMG00000169714.2 overlapping_locus +18193 chr12 HAVANA gene 53006158 53042209 6146.0 + 0 ENSG00000063046.17 protein_coding EIF4B 1 OTTHUMG00000169570.7 overlapping_locus +18194 chr12 HAVANA gene 53014596 53054438 5622.0 - 0 ENSG00000257337.6 antisense AC068888.1 2 OTTHUMG00000169806.5 +18195 chr12 ENSEMBL gene 53056944 53057012 69.0 + 0 ENSG00000278108.1 miRNA MIR6757 3 +18196 chr12 HAVANA gene 53046969 53064372 8093.0 + 0 ENSG00000111077.17 protein_coding TNS2 1 OTTHUMG00000169730.13 ncRNA_host +18197 chr12 HAVANA gene 53064316 53079420 3479.0 - 0 ENSG00000167778.8 protein_coding SPRYD3 1 OTTHUMG00000170101.3 +18198 chr12 HAVANA gene 53097436 53102345 1279.0 + 0 ENSG00000167779.8 protein_coding IGFBP6 1 OTTHUMG00000169773.3 +18199 chr12 HAVANA gene 53103518 53124538 2044.0 + 0 ENSG00000167780.11 protein_coding SOAT2 1 OTTHUMG00000169774.4 +18200 chr12 HAVANA gene 53131350 53131985 636.0 + 0 ENSG00000258074.1 processed_pseudogene VTI1BP3 1 OTTHUMG00000170022.1 pseudo_consens +18201 chr12 ENSEMBL gene 53138545 53138651 107.0 - 0 ENSG00000238669.1 snRNA RNU6-333P 3 +18202 chr12 HAVANA gene 53142053 53142327 275.0 + 0 ENSG00000258016.1 processed_pseudogene HIGD1AP1 1 OTTHUMG00000170023.1 pseudo_consens +18203 chr12 HAVANA gene 53153272 53154484 1213.0 + 0 ENSG00000257790.1 processed_pseudogene EIF4A1P4 1 OTTHUMG00000170024.1 pseudo_consens +18204 chr12 HAVANA gene 53159586 53161000 481.0 + 0 ENSG00000257808.1 lincRNA AC073573.1 2 OTTHUMG00000170026.1 +18205 chr12 HAVANA gene 53157663 53180909 4390.0 - 0 ENSG00000139631.18 protein_coding CSAD 1 OTTHUMG00000048076.12 +18206 chr12 HAVANA gene 53180700 53195141 9063.0 + 0 ENSG00000139651.10 protein_coding ZNF740 1 OTTHUMG00000170027.3 +18207 chr12 HAVANA gene 53191318 53207307 4481.0 - 0 ENSG00000139626.15 protein_coding ITGB7 1 OTTHUMG00000169775.5 +18208 chr12 HAVANA gene 53210567 53232980 5127.0 - 0 ENSG00000172819.16 protein_coding RARG 2 OTTHUMG00000048077.4 +18209 chr12 HAVANA gene 53241889 53242723 835.0 + 0 ENSG00000283536.2 protein_coding AC021072.1 2 OTTHUMG00000191815.2 +18210 chr12 HAVANA gene 53251251 53254405 2581.0 + 0 ENSG00000182544.8 protein_coding MFSD5 2 OTTHUMG00000170028.4 +18211 chr12 HAVANA gene 53268299 53293643 8890.0 + 0 ENSG00000135476.11 protein_coding ESPL1 2 OTTHUMG00000169674.5 +18212 chr12 HAVANA gene 53295291 53299450 3380.0 + 0 ENSG00000123349.13 protein_coding PFDN5 1 OTTHUMG00000169675.3 +18213 chr12 HAVANA gene 53298655 53300314 647.0 - 0 ENSG00000257605.2 antisense AC073611.1 2 OTTHUMG00000170029.2 +18214 chr12 HAVANA gene 53299686 53307177 2509.0 + 0 ENSG00000139637.13 protein_coding C12orf10 1 OTTHUMG00000170030.2 +18215 chr12 HAVANA gene 53307456 53324864 4138.0 - 0 ENSG00000094914.12 protein_coding AAAS 1 OTTHUMG00000169729.4 +18216 chr12 HAVANA gene 53326575 53345315 3414.0 - 0 ENSG00000170374.5 protein_coding SP7 1 OTTHUMG00000170031.5 +18217 chr12 HAVANA gene 53380176 53416446 8083.0 + 0 ENSG00000185591.9 protein_coding SP1 1 OTTHUMG00000170047.4 +18218 chr12 HAVANA gene 53423855 53431534 3518.0 + 0 ENSG00000135409.10 protein_coding AMHR2 1 OTTHUMG00000170048.3 +18219 chr12 HAVANA gene 53441605 53446645 2897.0 + 0 ENSG00000205352.10 protein_coding PRR13 2 OTTHUMG00000170049.3 overlapping_locus +18220 chr12 ENSEMBL gene 53464720 53464901 182.0 + 0 ENSG00000273658.1 misc_RNA RF02271 3 +18221 chr12 HAVANA gene 53464468 53465057 590.0 + 0 ENSG00000282977.1 non_coding PCBP2-OT1 2 OTTHUMG00000189729.1 ncRNA_host,overlapping_locus +18222 chr12 HAVANA gene 53441741 53467528 1571.0 + 0 ENSG00000257379.1 processed_transcript AC023509.1 2 OTTHUMG00000170050.1 ncRNA_host,overlapping_locus +18223 chr12 HAVANA gene 53452102 53481162 7926.0 + 0 ENSG00000197111.15 protein_coding PCBP2 1 OTTHUMG00000169439.7 ncRNA_host,overlapping_locus +18224 chr12 HAVANA gene 53479669 53500063 7971.0 - 0 ENSG00000139625.12 protein_coding MAP3K12 1 OTTHUMG00000169854.4 +18225 chr12 HAVANA gene 53500162 53500936 775.0 - 0 ENSG00000270175.1 antisense AC023509.4 2 OTTHUMG00000183931.1 +18226 chr12 HAVANA gene 53500921 53506431 4090.0 + 0 ENSG00000139546.10 protein_coding TARBP2 1 OTTHUMG00000169855.5 +18227 chr12 HAVANA gene 53506690 53507638 592.0 - 0 ENSG00000139574.8 protein_coding NPFF 2 OTTHUMG00000169856.1 overlapping_locus +18228 chr12 HAVANA gene 53513984 53517608 2297.0 + 0 ENSG00000257550.1 antisense AC023509.2 2 OTTHUMG00000169858.1 +18229 chr12 HAVANA gene 53574632 53576103 807.0 + 0 ENSG00000275488.1 processed_pseudogene AC023509.5 2 OTTHUMG00000187924.1 +18230 chr12 HAVANA gene 53531752 53621218 867.0 + 0 ENSG00000285692.1 antisense AC023509.6 2 OTTHUMG00000193268.1 +18231 chr12 HAVANA gene 53506688 53625979 2690.0 - 0 ENSG00000267281.2 protein_coding AC023509.3 2 OTTHUMG00000182349.1 overlapping_locus +18232 chr12 HAVANA gene 53507856 53626410 7980.0 - 0 ENSG00000170653.18 protein_coding ATF7 2 OTTHUMG00000169776.6 overlapping_locus +18233 chr12 HAVANA gene 53632788 53633151 364.0 - 0 ENSG00000213470.4 processed_pseudogene AC073594.1 1 OTTHUMG00000157575.1 pseudo_consens,overlapping_locus +18234 chr12 HAVANA gene 53632726 53677408 3991.0 - 0 ENSG00000135390.18 protein_coding ATP5MC2 1 OTTHUMG00000133442.5 overlapping_locus +18235 chr12 HAVANA gene 53708517 53727745 8898.0 - 0 ENSG00000012822.15 protein_coding CALCOCO1 1 OTTHUMG00000170095.4 +18236 chr12 HAVANA gene 53750447 53757034 918.0 - 0 ENSG00000260492.2 lincRNA CISTR 2 OTTHUMG00000173078.2 +18237 chr12 HAVANA gene 53754358 53762104 429.0 + 0 ENSG00000260030.1 lincRNA AC076968.1 2 OTTHUMG00000173079.1 +18238 chr12 ENSEMBL gene 53816185 53816479 295.0 + 0 ENSG00000253053.1 misc_RNA RN7SKP289 3 +18239 chr12 HAVANA gene 53935328 53939643 1408.0 - 0 ENSG00000249641.2 antisense HOXC13-AS 1 OTTHUMG00000160009.2 +18240 chr12 HAVANA gene 53938765 53946544 2423.0 + 0 ENSG00000123364.4 protein_coding HOXC13 2 OTTHUMG00000160008.3 +18241 chr12 HAVANA gene 53954834 53958956 3335.0 + 0 ENSG00000123407.3 protein_coding HOXC12 2 OTTHUMG00000160010.2 overlapping_locus +18242 chr12 ENSEMBL gene 53963629 53963697 69.0 + 0 ENSG00000275589.1 misc_RNA RF01905 3 +18243 chr12 ENSEMBL gene 53965965 53966061 97.0 + 0 ENSG00000277994.1 misc_RNA RF01906 3 +18244 chr12 ENSEMBL gene 53968002 53968178 177.0 + 0 ENSG00000274817.1 misc_RNA AC012531.3 3 +18245 chr12 ENSEMBL gene 53968351 53968501 151.0 + 0 ENSG00000277129.1 misc_RNA AC012531.4 3 +18246 chr12 HAVANA gene 53962308 53974956 2602.0 - 0 ENSG00000228630.5 antisense HOTAIR 2 OTTHUMG00000152934.1 +18247 chr12 HAVANA gene 53973126 53977643 3265.0 + 0 ENSG00000123388.4 protein_coding HOXC11 1 OTTHUMG00000160011.3 +18248 chr12 HAVANA gene 53981509 53985519 3109.0 - 0 ENSG00000251151.2 processed_transcript HOXC-AS3 1 OTTHUMG00000160025.1 +18249 chr12 HAVANA gene 53985065 53990279 2331.0 + 0 ENSG00000180818.4 protein_coding HOXC10 1 OTTHUMG00000160031.2 overlapping_locus +18250 chr12 ENSEMBL gene 53991738 53991847 110.0 + 0 ENSG00000207924.3 miRNA MIR196A2 3 +18251 chr12 HAVANA gene 53993810 53996785 2216.0 - 0 ENSG00000250133.2 processed_transcript HOXC-AS2 1 OTTHUMG00000160030.2 +18252 chr12 HAVANA gene 53999022 54000010 592.0 - 0 ENSG00000250451.5 antisense HOXC-AS1 1 OTTHUMG00000160024.1 +18253 chr12 HAVANA gene 53994895 54003337 1679.0 + 0 ENSG00000180806.4 protein_coding HOXC9 2 OTTHUMG00000160033.1 overlapping_locus +18254 chr12 HAVANA gene 54009106 54012362 1889.0 + 0 ENSG00000037965.5 protein_coding HOXC8 2 OTTHUMG00000160032.3 overlapping_locus +18255 chr12 HAVANA gene 54019910 54022589 2680.0 + 0 ENSG00000260597.1 lincRNA AC012531.1 2 OTTHUMG00000173080.1 overlapping_locus +18256 chr12 HAVANA gene 53990624 54030823 3540.0 + 0 ENSG00000197757.7 protein_coding HOXC6 2 OTTHUMG00000160027.2 ncRNA_host,overlapping_locus +18257 chr12 ENSEMBL gene 54033950 54034045 96.0 + 0 ENSG00000207571.1 miRNA MIR615 3 +18258 chr12 HAVANA gene 53985845 54034888 777.0 + 0 ENSG00000273049.1 protein_coding AC012531.2 2 OTTHUMG00000186015.1 ncRNA_host,overlapping_locus +18259 chr12 HAVANA gene 54032853 54035358 1805.0 + 0 ENSG00000172789.3 protein_coding HOXC5 1 OTTHUMG00000160028.1 ncRNA_host,overlapping_locus +18260 chr12 HAVANA gene 54017110 54035361 1389.0 + 0 ENSG00000273046.1 processed_transcript HOXC5 2 OTTHUMG00000186499.1 ncRNA_host,overlapping_locus +18261 chr12 HAVANA gene 54016931 54056030 2725.0 + 0 ENSG00000198353.7 protein_coding HOXC4 1 OTTHUMG00000160036.1 ncRNA_host,overlapping_locus +18262 chr12 HAVANA gene 54076838 54081903 1390.0 - 0 ENSG00000250654.7 transcribed_unprocessed_pseudogene AC023794.3 1 OTTHUMG00000160023.3 +18263 chr12 ENSEMBL gene 54099191 54099302 112.0 - 0 ENSG00000202146.1 misc_RNA RF00019 3 +18264 chr12 HAVANA gene 54082118 54102693 528.0 + 0 ENSG00000249388.1 lincRNA AC023794.2 2 OTTHUMG00000160029.1 overlapping_locus +18265 chr12 HAVANA gene 54058254 54122234 3942.0 + 0 ENSG00000248265.1 lincRNA FLJ12825 2 OTTHUMG00000160034.1 overlapping_locus +18266 chr12 HAVANA gene 54085132 54125992 1124.0 - 0 ENSG00000250432.5 lincRNA FAM242C 1 OTTHUMG00000160026.1 ncRNA_host +18267 chr12 HAVANA gene 54126098 54142493 2310.0 + 0 ENSG00000250742.2 lincRNA LINC02381 2 OTTHUMG00000160035.2 +18268 chr12 HAVANA gene 54145069 54147225 2157.0 - 0 ENSG00000260470.1 lincRNA AC023794.5 2 OTTHUMG00000172878.1 +18269 chr12 HAVANA gene 54142591 54147485 1734.0 + 0 ENSG00000283073.1 lincRNA SMUG1-AS1 2 OTTHUMG00000191576.1 +18270 chr12 HAVANA gene 54162065 54164452 754.0 - 0 ENSG00000257534.1 lincRNA AC023794.4 2 OTTHUMG00000170269.1 +18271 chr12 HAVANA gene 54163139 54168595 403.0 + 0 ENSG00000248576.1 antisense AC023794.1 2 OTTHUMG00000160022.1 +18272 chr12 HAVANA gene 54121277 54189008 6027.0 - 0 ENSG00000123415.15 protein_coding SMUG1 1 OTTHUMG00000160068.5 +18273 chr12 ENSEMBL gene 54231397 54231476 80.0 - 0 ENSG00000283803.1 miRNA MIR3198-2 3 +18274 chr12 ENSEMBL gene 54255627 54255910 284.0 - 0 ENSG00000241785.3 misc_RNA RN7SL390P 3 +18275 chr12 HAVANA gene 54262615 54279063 735.0 + 0 ENSG00000257596.1 antisense AC078778.1 2 OTTHUMG00000169701.1 overlapping_locus +18276 chr12 HAVANA gene 54230940 54280133 15040.0 - 0 ENSG00000094916.15 protein_coding CBX5 1 OTTHUMG00000169700.2 ncRNA_host +18277 chr12 HAVANA gene 54280193 54287088 5093.0 + 0 ENSG00000135486.17 protein_coding HNRNPA1 2 OTTHUMG00000169702.4 overlapping_locus +18278 chr12 HAVANA gene 54292111 54301121 2469.0 - 0 ENSG00000123405.13 protein_coding NFE2 2 OTTHUMG00000169761.1 +18279 chr12 ENSEMBL gene 54317781 54317887 107.0 - 0 ENSG00000207381.1 snRNA RNU6-950P 3 +18280 chr12 ENSEMBL gene 54337216 54337314 99.0 + 0 ENSG00000199122.3 miRNA MIR148B 3 +18281 chr12 ENSEMBL gene 54344610 54344876 267.0 + 0 ENSG00000264028.2 misc_RNA RN7SL744P 3 +18282 chr12 HAVANA gene 54276631 54345083 567.0 + 0 ENSG00000258344.1 sense_overlapping AC078778.2 2 OTTHUMG00000169929.1 ncRNA_host,overlapping_locus +18283 chr12 HAVANA gene 54301202 54351849 3901.0 + 0 ENSG00000111481.9 protein_coding COPZ1 2 OTTHUMG00000169762.2 ncRNA_host,overlapping_locus +18284 chr12 HAVANA gene 54362445 54364487 2043.0 - 0 ENSG00000139572.3 protein_coding GPR84 2 OTTHUMG00000169839.1 +18285 chr12 HAVANA gene 54369133 54391298 3179.0 - 0 ENSG00000161642.17 protein_coding ZNF385A 2 OTTHUMG00000169840.2 +18286 chr12 HAVANA gene 54395261 54419460 7577.0 - 0 ENSG00000161638.10 protein_coding ITGA5 2 OTTHUMG00000169841.2 +18287 chr12 HAVANA gene 54428303 54429403 454.0 + 0 ENSG00000257477.1 lincRNA LINC01154 2 OTTHUMG00000169932.1 overlapping_locus +18288 chr12 HAVANA gene 54353792 54466985 546.0 + 0 ENSG00000258086.1 antisense AC079313.1 2 OTTHUMG00000169931.1 overlapping_locus +18289 chr12 HAVANA gene 54455950 54473602 2524.0 - 0 ENSG00000170627.10 protein_coding GTSF1 2 OTTHUMG00000169842.1 +18290 chr12 HAVANA gene 54353661 54497688 924.0 + 0 ENSG00000258137.5 antisense AC079313.2 2 OTTHUMG00000169930.1 overlapping_locus +18291 chr12 HAVANA gene 54543111 54544105 577.0 - 0 ENSG00000257824.1 antisense AC068789.1 2 OTTHUMG00000169933.1 +18292 chr12 HAVANA gene 54497711 54548238 10596.0 + 0 ENSG00000123338.12 protein_coding NCKAP1L 2 OTTHUMG00000169843.2 +18293 chr12 HAVANA gene 54549350 54579239 7618.0 + 0 ENSG00000123360.11 protein_coding PDE1B 1 OTTHUMG00000169844.3 +18294 chr12 HAVANA gene 54575387 54588659 3982.0 - 0 ENSG00000135447.16 protein_coding PPP1R1A 2 OTTHUMG00000169934.3 +18295 chr12 HAVANA gene 54608187 54610462 816.0 - 0 ENSG00000257780.5 transcribed_unitary_pseudogene GLYCAM1 2 OTTHUMG00000169935.2 +18296 chr12 HAVANA gene 54630811 54634895 882.0 - 0 ENSG00000135413.8 protein_coding LACRT 2 OTTHUMG00000169936.1 +18297 chr12 HAVANA gene 54644591 54648493 876.0 - 0 ENSG00000161634.11 protein_coding DCD 2 OTTHUMG00000169937.1 +18298 chr12 HAVANA gene 54682973 54687434 700.0 + 0 ENSG00000257634.1 lincRNA AC079310.1 2 OTTHUMG00000169938.1 +18299 chr12 HAVANA gene 54802746 54803589 844.0 - 0 ENSG00000270858.1 processed_pseudogene VDAC1P5 1 OTTHUMG00000169848.2 pseudo_consens +18300 chr12 HAVANA gene 54830519 54858393 1250.0 + 0 ENSG00000172551.10 protein_coding MUCL1 2 OTTHUMG00000169815.2 +18301 chr12 HAVANA gene 54948018 54984746 5025.0 - 0 ENSG00000135426.15 protein_coding TESPA1 1 OTTHUMG00000165407.3 +18302 chr12 HAVANA gene 55009746 55014247 592.0 + 0 ENSG00000257870.1 lincRNA AC027287.2 2 OTTHUMG00000169825.1 +18303 chr12 HAVANA gene 55019945 55030014 3953.0 + 0 ENSG00000123307.3 protein_coding NEUROD4 2 OTTHUMG00000169826.1 +18304 chr12 HAVANA gene 55113077 55118632 3217.0 + 0 ENSG00000196534.5 transcribed_unitary_pseudogene OR9K1P 2 OTTHUMG00000154383.2 +18305 chr12 HAVANA gene 55122668 55124120 1453.0 - 0 ENSG00000257350.1 processed_pseudogene AC027287.1 1 OTTHUMG00000169849.1 pseudo_consens +18306 chr12 HAVANA gene 55126406 55132750 3265.0 + 0 ENSG00000170605.6 protein_coding OR9K2 2 OTTHUMG00000169827.2 +18307 chr12 HAVANA gene 55158847 55159723 877.0 + 0 ENSG00000224622.1 unprocessed_pseudogene OR9R1P 2 OTTHUMG00000154376.1 +18308 chr12 HAVANA gene 55193882 55194786 905.0 - 0 ENSG00000227423.2 unprocessed_pseudogene OR10U1P 2 OTTHUMG00000154304.1 +18309 chr12 HAVANA gene 55221025 55221975 951.0 + 0 ENSG00000179919.3 protein_coding OR10A7 2 OTTHUMG00000169860.2 +18310 chr12 HAVANA gene 55247198 55248302 1105.0 + 0 ENSG00000197706.3 protein_coding OR6C74 2 OTTHUMG00000165162.1 +18311 chr12 HAVANA gene 55262539 55263431 893.0 + 0 ENSG00000213451.2 unprocessed_pseudogene OR6C69P 2 OTTHUMG00000154374.1 +18312 chr12 HAVANA gene 55283750 55284641 892.0 + 0 ENSG00000205331.5 unprocessed_pseudogene OR6C72P 2 OTTHUMG00000154372.1 +18313 chr12 HAVANA gene 55293988 55296569 1521.0 - 0 ENSG00000188324.4 protein_coding OR6C6 2 OTTHUMG00000168101.3 +18314 chr12 HAVANA gene 55311835 55312757 923.0 + 0 ENSG00000230307.1 unprocessed_pseudogene OR6C5P 2 OTTHUMG00000154364.1 +18315 chr12 HAVANA gene 55314343 55322364 2061.0 + 0 ENSG00000205330.4 protein_coding OR6C1 2 OTTHUMG00000168102.5 +18316 chr12 HAVANA gene 55330043 55332687 1403.0 + 0 ENSG00000205329.2 protein_coding OR6C3 2 OTTHUMG00000169861.3 +18317 chr12 HAVANA gene 55342841 55343774 934.0 + 0 ENSG00000257757.1 unprocessed_pseudogene OR6C7P 2 OTTHUMG00000169885.1 +18318 chr12 HAVANA gene 55362975 55369279 4569.0 + 0 ENSG00000187857.4 protein_coding OR6C75 2 OTTHUMG00000169886.3 +18319 chr12 HAVANA gene 55376742 55378797 1107.0 - 0 ENSG00000203408.4 transcribed_unprocessed_pseudogene OR6C71P 2 OTTHUMG00000154366.2 +18320 chr12 HAVANA gene 55385837 55392964 4713.0 + 0 ENSG00000233606.2 transcribed_unprocessed_pseudogene OR6C66P 2 OTTHUMG00000154365.2 +18321 chr12 HAVANA gene 55396340 55396697 358.0 + 0 ENSG00000257414.1 unprocessed_pseudogene OR6C73P 2 OTTHUMG00000169954.1 +18322 chr12 HAVANA gene 55400430 55401505 1076.0 + 0 ENSG00000205328.2 protein_coding OR6C65 2 OTTHUMG00000169955.1 +18323 chr12 HAVANA gene 55411727 55414787 3061.0 - 0 ENSG00000179899.8 processed_pseudogene PHC1P1 2 OTTHUMG00000170978.1 +18324 chr12 HAVANA gene 55426254 55427192 939.0 + 0 ENSG00000185821.3 protein_coding OR6C76 2 OTTHUMG00000169956.2 +18325 chr12 HAVANA gene 55444069 55453347 2112.0 + 0 ENSG00000179695.2 protein_coding OR6C2 2 OTTHUMG00000169957.3 +18326 chr12 HAVANA gene 55469200 55470138 939.0 - 0 ENSG00000184954.4 protein_coding OR6C70 2 OTTHUMG00000171127.2 +18327 chr12 HAVANA gene 55492378 55493316 939.0 + 0 ENSG00000205327.3 protein_coding OR6C68 2 OTTHUMG00000169958.2 +18328 chr12 HAVANA gene 55522593 55523417 825.0 + 0 ENSG00000234670.1 unprocessed_pseudogene OR6C64P 2 OTTHUMG00000154363.1 +18329 chr12 HAVANA gene 55549602 55555832 5151.0 + 0 ENSG00000179626.4 protein_coding OR6C4 2 OTTHUMG00000169959.2 +18330 chr12 HAVANA gene 55572468 55575612 1548.0 + 0 ENSG00000179615.2 protein_coding OR2AP1 2 OTTHUMG00000169960.3 +18331 chr12 HAVANA gene 55434734 55585471 681.0 - 0 ENSG00000258763.5 antisense AC122685.1 2 OTTHUMG00000170899.2 +18332 chr12 HAVANA gene 55608043 55615878 4384.0 + 0 ENSG00000272937.2 transcribed_unprocessed_pseudogene OR6U2P 2 OTTHUMG00000185940.2 +18333 chr12 HAVANA gene 55636860 55637854 995.0 + 0 ENSG00000175398.2 protein_coding OR10P1 2 OTTHUMG00000169961.1 +18334 chr12 HAVANA gene 55646195 55646663 469.0 - 0 ENSG00000272837.1 unprocessed_pseudogene OR10AE3P 2 OTTHUMG00000185941.1 +18335 chr12 HAVANA gene 55654558 55655168 611.0 - 0 ENSG00000258907.2 processed_pseudogene AC009779.3 1 OTTHUMG00000170893.2 pseudo_consens +18336 chr12 HAVANA gene 55638912 55659795 488.0 - 0 ENSG00000258921.1 antisense AC009779.4 2 OTTHUMG00000170892.1 +18337 chr12 HAVANA gene 55662337 55662501 165.0 - 0 ENSG00000270458.1 processed_pseudogene AC009779.5 1 OTTHUMG00000184775.1 pseudo_consens +18338 chr12 HAVANA gene 55681546 55684611 1506.0 + 0 ENSG00000170439.6 protein_coding METTL7B 2 OTTHUMG00000152665.1 +18339 chr12 HAVANA gene 55684568 55716043 6373.0 - 0 ENSG00000135424.16 protein_coding ITGA7 2 OTTHUMG00000170699.16 +18340 chr12 HAVANA gene 55716037 55720087 1656.0 + 0 ENSG00000135441.7 protein_coding BLOC1S1 2 OTTHUMG00000169962.3 overlapping_locus +18341 chr12 HAVANA gene 55716036 55724703 3510.0 + 0 ENSG00000258311.5 protein_coding BLOC1S1-RDH5 2 OTTHUMG00000170130.2 overlapping_locus +18342 chr12 HAVANA gene 55720367 55724705 2983.0 + 0 ENSG00000135437.9 protein_coding RDH5 1 OTTHUMG00000170126.4 overlapping_locus +18343 chr12 HAVANA gene 55725323 55729707 2633.0 - 0 ENSG00000135404.11 protein_coding CD63 1 OTTHUMG00000170454.5 +18344 chr12 HAVANA gene 55729104 55730852 1443.0 + 0 ENSG00000258056.2 antisense AC009779.2 2 OTTHUMG00000170187.2 +18345 chr12 ENSEMBL gene 55731264 55731531 268.0 - 0 ENSG00000258045.2 misc_RNA RF00017 3 +18346 chr12 HAVANA gene 55732366 55732648 283.0 - 0 ENSG00000257384.1 processed_pseudogene AC009779.1 2 OTTHUMG00000170455.1 +18347 chr12 HAVANA gene 55743280 55757278 8657.0 + 0 ENSG00000135414.9 protein_coding GDF11 2 OTTHUMG00000170188.4 +18348 chr12 HAVANA gene 55761550 55762628 529.0 - 0 ENSG00000257509.1 sense_intronic AC073487.1 2 OTTHUMG00000170442.1 overlapping_locus +18349 chr12 HAVANA gene 55752463 55817756 3396.0 - 0 ENSG00000205323.8 protein_coding SARNP 2 OTTHUMG00000170441.3 overlapping_locus +18350 chr12 HAVANA gene 55817919 55821879 2810.0 + 0 ENSG00000123353.9 protein_coding ORMDL2 1 OTTHUMG00000170202.1 +18351 chr12 HAVANA gene 55757275 55827546 2534.0 - 0 ENSG00000257390.5 protein_coding AC023055.1 1 OTTHUMG00000170449.1 overlapping_locus +18352 chr12 HAVANA gene 55820960 55830824 4190.0 - 0 ENSG00000135392.16 protein_coding DNAJC14 2 OTTHUMG00000170427.5 overlapping_locus +18353 chr12 HAVANA gene 55829608 55836246 4219.0 + 0 ENSG00000182796.14 transcribed_unitary_pseudogene TMEM198B 2 OTTHUMG00000154568.4 +18354 chr12 HAVANA gene 55835433 55842966 4672.0 - 0 ENSG00000123342.15 protein_coding MMP19 1 OTTHUMG00000170216.2 +18355 chr12 HAVANA gene 55870048 55872602 2555.0 - 0 ENSG00000257966.1 processed_pseudogene OLA1P3 1 OTTHUMG00000170206.1 pseudo_consens +18356 chr12 HAVANA gene 55900300 55900618 319.0 + 0 ENSG00000257569.1 processed_pseudogene GSTP1P1 1 OTTHUMG00000170203.1 pseudo_consens +18357 chr12 HAVANA gene 55929170 55929729 560.0 + 0 ENSG00000273973.1 sense_intronic AC025162.2 2 OTTHUMG00000188623.1 +18358 chr12 HAVANA gene 55901413 55932618 2425.0 - 0 ENSG00000170473.16 protein_coding PYM1 2 OTTHUMG00000170220.5 +18359 chr12 HAVANA gene 55927319 55954027 10215.0 + 0 ENSG00000065357.19 protein_coding DGKA 2 OTTHUMG00000170109.13 +18360 chr12 HAVANA gene 55966838 55967474 565.0 - 0 ENSG00000258554.1 antisense AC025162.1 2 OTTHUMG00000170576.1 overlapping_locus +18361 chr12 HAVANA gene 55966769 55972784 3894.0 + 0 ENSG00000123374.10 protein_coding CDK2 1 OTTHUMG00000170575.1 +18362 chr12 HAVANA gene 55954105 55973317 3901.0 - 0 ENSG00000185664.14 protein_coding PMEL 1 OTTHUMG00000170573.5 overlapping_locus +18363 chr12 HAVANA gene 55980432 55981035 604.0 - 0 ENSG00000237493.3 processed_pseudogene AC034102.1 1 OTTHUMG00000170137.2 pseudo_consens +18364 chr12 HAVANA gene 55973913 55996683 6588.0 + 0 ENSG00000111540.15 protein_coding RAB5B 1 OTTHUMG00000169682.3 +18365 chr12 HAVANA gene 55997180 56006641 5008.0 + 0 ENSG00000139531.12 protein_coding SUOX 2 OTTHUMG00000128503.5 +18366 chr12 HAVANA gene 56010091 56010574 484.0 - 0 ENSG00000273890.1 antisense AC034102.8 2 OTTHUMG00000187395.1 +18367 chr12 HAVANA gene 56007659 56038435 6808.0 + 0 ENSG00000123411.14 protein_coding IKZF4 1 OTTHUMG00000170132.4 +18368 chr12 HAVANA gene 56029649 56041806 300.0 - 0 ENSG00000257449.1 antisense AC034102.3 2 OTTHUMG00000170138.1 +18369 chr12 HAVANA gene 56041351 56044697 2053.0 + 0 ENSG00000197728.11 protein_coding RPS26 2 OTTHUMG00000170139.7 +18370 chr12 HAVANA gene 56076799 56103505 9039.0 + 0 ENSG00000065361.15 protein_coding ERBB3 2 OTTHUMG00000170140.8 overlapping_locus +18371 chr12 HAVANA gene 56101331 56109289 489.0 + 0 ENSG00000257411.1 protein_coding AC034102.2 2 OTTHUMG00000170152.4 overlapping_locus +18372 chr12 HAVANA gene 56104614 56113905 434.0 - 0 ENSG00000257553.1 antisense AC034102.4 2 OTTHUMG00000170262.1 +18373 chr12 HAVANA gene 56104319 56113907 3795.0 + 0 ENSG00000170515.13 protein_coding PA2G4 1 OTTHUMG00000170173.3 overlapping_locus +18374 chr12 HAVANA gene 56116586 56117943 1088.0 + 0 ENSG00000229117.8 protein_coding RPL41 2 OTTHUMG00000170183.1 +18375 chr12 HAVANA gene 56118968 56119939 470.0 - 0 ENSG00000258345.1 antisense AC034102.7 2 OTTHUMG00000170141.1 +18376 chr12 HAVANA gene 56118159 56127514 8464.0 + 0 ENSG00000135482.6 protein_coding ZC3H10 2 OTTHUMG00000170184.5 overlapping_locus +18377 chr12 HAVANA gene 56120033 56129619 1294.0 - 0 ENSG00000258317.1 antisense AC034102.6 2 OTTHUMG00000170142.1 +18378 chr12 HAVANA gene 56118250 56144671 5493.0 + 0 ENSG00000139641.12 protein_coding ESYT1 2 OTTHUMG00000170197.2 overlapping_locus +18379 chr12 HAVANA gene 56150796 56158220 540.0 - 0 ENSG00000257809.1 antisense AC034102.5 2 OTTHUMG00000170198.1 +18380 chr12 HAVANA gene 56152256 56159647 3259.0 + 0 ENSG00000196465.10 protein_coding MYL6B 2 OTTHUMG00000170199.6 overlapping_locus +18381 chr12 HAVANA gene 56158161 56163496 4609.0 + 0 ENSG00000092841.18 protein_coding MYL6 2 OTTHUMG00000170200.7 overlapping_locus +18382 chr12 HAVANA gene 56162983 56189567 8555.0 - 0 ENSG00000139613.11 protein_coding SMARCC2 2 OTTHUMG00000170288.4 overlapping_locus +18383 chr12 HAVANA gene 56162359 56190284 403.0 - 0 ENSG00000258199.1 sense_overlapping AC073896.4 2 OTTHUMG00000170287.1 overlapping_locus +18384 chr12 HAVANA gene 56202175 56221933 6537.0 - 0 ENSG00000181852.17 protein_coding RNF41 2 OTTHUMG00000170328.3 +18385 chr12 HAVANA gene 56222015 56229854 2218.0 + 0 ENSG00000139579.12 protein_coding NABP2 2 OTTHUMG00000152527.5 +18386 chr12 HAVANA gene 56230049 56237846 2903.0 + 0 ENSG00000139540.11 protein_coding SLC39A5 1 OTTHUMG00000156962.4 +18387 chr12 HAVANA gene 56237807 56258391 8820.0 - 0 ENSG00000139645.9 protein_coding ANKRD52 2 OTTHUMG00000170329.2 +18388 chr12 HAVANA gene 56267793 56270104 542.0 - 0 ENSG00000258260.1 antisense AC073896.5 2 OTTHUMG00000170434.1 +18389 chr12 HAVANA gene 56266858 56270966 3243.0 + 0 ENSG00000135469.13 protein_coding COQ10A 2 OTTHUMG00000170283.3 +18390 chr12 HAVANA gene 56271699 56300392 6402.0 - 0 ENSG00000062485.18 protein_coding CS 1 OTTHUMG00000170344.8 overlapping_locus +18391 chr12 HAVANA gene 56308868 56309449 437.0 + 0 ENSG00000257740.1 antisense AC073896.3 2 OTTHUMG00000170367.1 overlapping_locus +18392 chr12 HAVANA gene 56300142 56314808 576.0 + 0 ENSG00000257303.1 antisense AC073896.2 2 OTTHUMG00000170366.1 overlapping_locus +18393 chr12 HAVANA gene 56285916 56316059 1053.0 - 0 ENSG00000144785.8 protein_coding AC073896.1 2 OTTHUMG00000170347.2 overlapping_locus +18394 chr12 HAVANA gene 56309842 56316336 2956.0 - 0 ENSG00000257727.5 protein_coding CNPY2 2 OTTHUMG00000170330.4 overlapping_locus +18395 chr12 HAVANA gene 56316223 56334053 7288.0 - 0 ENSG00000135473.14 protein_coding PAN2 1 OTTHUMG00000170412.6 +18396 chr12 HAVANA gene 56334174 56340410 1187.0 + 0 ENSG00000110944.8 protein_coding IL23A 2 OTTHUMG00000187402.1 +18397 chr12 ENSEMBL gene 56352387 56352450 64.0 - 0 ENSG00000252206.1 snRNA RNU7-40P 3 +18398 chr12 HAVANA gene 56341597 56360155 6109.0 - 0 ENSG00000170581.13 protein_coding STAT2 1 OTTHUMG00000170760.3 ncRNA_host +18399 chr12 HAVANA gene 56360569 56362823 1715.0 - 0 ENSG00000175336.9 protein_coding APOF 2 OTTHUMG00000170715.1 +18400 chr12 HAVANA gene 56376818 56377331 514.0 - 0 ENSG00000274823.1 processed_pseudogene APONP 2 OTTHUMG00000188037.1 +18401 chr12 HAVANA gene 56380361 56382711 1653.0 - 0 ENSG00000259099.2 processed_pseudogene AC025574.1 1 OTTHUMG00000170716.2 pseudo_consens +18402 chr12 HAVANA gene 56411944 56413190 1247.0 - 0 ENSG00000276272.1 lincRNA AC024884.2 2 OTTHUMG00000187926.1 +18403 chr12 HAVANA gene 56413647 56414045 399.0 - 0 ENSG00000274569.1 processed_pseudogene AC024884.1 2 OTTHUMG00000187927.1 +18404 chr12 HAVANA gene 56416373 56449403 5818.0 - 0 ENSG00000111602.11 protein_coding TIMELESS 2 OTTHUMG00000170600.5 +18405 chr12 HAVANA gene 56449502 56469166 3348.0 - 0 ENSG00000135517.7 protein_coding MIP 2 OTTHUMG00000170571.5 +18406 chr12 HAVANA gene 56468567 56479707 10779.0 + 0 ENSG00000176422.13 protein_coding SPRYD4 2 OTTHUMG00000187405.3 +18407 chr12 HAVANA gene 56449700 56488170 2246.0 - 0 ENSG00000285528.1 protein_coding AC097104.1 2 OTTHUMG00000193403.1 +18408 chr12 HAVANA gene 56470944 56488414 4141.0 - 0 ENSG00000135423.12 protein_coding GLS2 2 OTTHUMG00000140379.3 +18409 chr12 HAVANA gene 56511002 56512703 1702.0 + 0 ENSG00000257576.1 processed_pseudogene HSPD1P4 1 OTTHUMG00000170572.1 pseudo_consens +18410 chr12 ENSEMBL gene 56588518 56588621 104.0 + 0 ENSG00000201579.1 snRNA RNU6-343P 3 +18411 chr12 HAVANA gene 56521929 56596196 8808.0 + 0 ENSG00000076067.12 protein_coding RBMS2 2 OTTHUMG00000170488.5 ncRNA_host +18412 chr12 HAVANA gene 56595596 56636816 10918.0 - 0 ENSG00000076108.11 protein_coding BAZ2A 1 OTTHUMG00000170332.5 +18413 chr12 ENSEMBL gene 56645027 56645101 75.0 - 0 ENSG00000207031.1 snoRNA SNORD59A 3 +18414 chr12 HAVANA gene 56638175 56646068 2322.0 - 0 ENSG00000110955.8 protein_coding ATP5F1B 1 OTTHUMG00000170291.5 ncRNA_host +18415 chr12 ENSEMBL gene 56670450 56670746 297.0 - 0 ENSG00000241217.3 misc_RNA RN7SL809P 3 +18416 chr12 HAVANA gene 56663341 56688408 3399.0 - 0 ENSG00000110958.15 protein_coding PTGES3 2 OTTHUMG00000170217.2 ncRNA_host +18417 chr12 HAVANA gene 56712428 56731628 10008.0 - 0 ENSG00000196531.10 protein_coding NACA 2 OTTHUMG00000170033.6 overlapping_locus +18418 chr12 HAVANA gene 56714612 56741535 588.0 - 0 ENSG00000285625.1 protein_coding AC117378.1 2 OTTHUMG00000193415.1 overlapping_locus +18419 chr12 HAVANA gene 56731596 56752373 2437.0 - 0 ENSG00000198056.13 protein_coding PRIM1 1 OTTHUMG00000170034.6 overlapping_locus +18420 chr12 HAVANA gene 56752161 56787790 2272.0 + 0 ENSG00000025423.11 protein_coding HSD17B6 1 OTTHUMG00000170854.5 +18421 chr12 HAVANA gene 56840973 56841273 301.0 - 0 ENSG00000273536.1 processed_pseudogene AC121758.3 2 OTTHUMG00000187903.1 +18422 chr12 HAVANA gene 56855694 56855886 193.0 + 0 ENSG00000258816.1 unprocessed_pseudogene AC121758.2 2 OTTHUMG00000170882.1 overlapping_locus +18423 chr12 ENSEMBL gene 56861375 56861508 134.0 + 0 ENSG00000212383.1 snoRNA RF00554 3 +18424 chr12 HAVANA gene 56822985 56874268 3942.0 + 0 ENSG00000258679.1 transcribed_processed_pseudogene AC121758.1 1 OTTHUMG00000170894.1 pseudo_consens,overlapping_locus +18425 chr12 HAVANA gene 56923154 56934405 1765.0 - 0 ENSG00000170426.1 protein_coding SDR9C7 2 OTTHUMG00000171004.1 +18426 chr12 HAVANA gene 56941174 56941482 309.0 - 0 ENSG00000278400.1 processed_pseudogene AC026120.2 2 OTTHUMG00000187928.1 +18427 chr12 HAVANA gene 56951431 56959374 3464.0 - 0 ENSG00000139547.7 protein_coding RDH16 2 OTTHUMG00000170895.2 +18428 chr12 HAVANA gene 56981211 56985960 926.0 - 0 ENSG00000278399.1 unprocessed_pseudogene AC026120.1 2 OTTHUMG00000187900.1 +18429 chr12 HAVANA gene 56994446 56998441 3451.0 + 0 ENSG00000166856.2 protein_coding GPR182 2 OTTHUMG00000171005.2 overlapping_locus +18430 chr12 HAVANA gene 56998834 57006446 6170.0 - 0 ENSG00000166860.2 protein_coding ZBTB39 2 OTTHUMG00000171007.1 +18431 chr12 HAVANA gene 57010000 57028883 1574.0 - 0 ENSG00000166863.11 protein_coding TAC3 2 OTTHUMG00000156958.1 overlapping_locus +18432 chr12 HAVANA gene 57028517 57051198 4438.0 - 0 ENSG00000166866.12 protein_coding MYO1A 2 OTTHUMG00000149899.4 overlapping_locus +18433 chr12 HAVANA gene 57055643 57088063 5708.0 - 0 ENSG00000166881.9 protein_coding NEMP1 2 OTTHUMG00000171021.1 +18434 chr12 HAVANA gene 57088894 57095476 3010.0 + 0 ENSG00000166886.12 protein_coding NAB2 2 OTTHUMG00000171192.1 +18435 chr12 HAVANA gene 57095408 57132139 7298.0 - 0 ENSG00000166888.11 protein_coding STAT6 1 OTTHUMG00000171194.6 +18436 chr12 HAVANA gene 57144620 57147619 879.0 - 0 ENSG00000259125.1 antisense LRP1-AS 2 OTTHUMG00000171280.1 +18437 chr12 ENSEMBL gene 57194504 57194576 73.0 + 0 ENSG00000221365.1 miRNA MIR1228 3 +18438 chr12 HAVANA gene 57128493 57213351 20839.0 + 0 ENSG00000123384.13 protein_coding LRP1 1 OTTHUMG00000044412.7 ncRNA_host +18439 chr12 HAVANA gene 57216795 57226449 2150.0 + 0 ENSG00000182379.9 protein_coding NXPH4 1 OTTHUMG00000171241.1 +18440 chr12 HAVANA gene 57229498 57230198 701.0 - 0 ENSG00000276727.1 antisense AC137834.2 2 OTTHUMG00000187451.1 +18441 chr12 HAVANA gene 57229327 57234935 4838.0 + 0 ENSG00000182199.10 protein_coding SHMT2 1 OTTHUMG00000171246.14 +18442 chr12 HAVANA gene 57234903 57240715 2806.0 - 0 ENSG00000185633.10 protein_coding NDUFA4L2 2 OTTHUMG00000171275.4 +18443 chr12 HAVANA gene 57243453 57251193 2096.0 - 0 ENSG00000185482.7 protein_coding STAC3 2 OTTHUMG00000171271.3 overlapping_locus +18444 chr12 HAVANA gene 57249609 57296484 2107.0 - 0 ENSG00000258830.1 protein_coding AC137834.1 2 OTTHUMG00000171276.2 overlapping_locus +18445 chr12 ENSEMBL gene 57415296 57415403 108.0 + 0 ENSG00000201198.1 snRNA RNU6-879P 3 +18446 chr12 HAVANA gene 57253762 57431005 5903.0 - 0 ENSG00000179912.20 protein_coding R3HDM2 1 OTTHUMG00000171568.8 overlapping_locus +18447 chr12 HAVANA gene 57431116 57433935 548.0 + 0 ENSG00000258001.1 lincRNA AC126614.1 2 OTTHUMG00000169993.1 +18448 chr12 HAVANA gene 57434760 57450828 1992.0 + 0 ENSG00000175189.3 protein_coding INHBC 2 OTTHUMG00000169994.1 +18449 chr12 HAVANA gene 57452323 57459280 3015.0 + 0 ENSG00000139269.2 protein_coding INHBE 2 OTTHUMG00000169995.2 +18450 chr12 HAVANA gene 57460135 57472262 4204.0 + 0 ENSG00000111087.9 protein_coding GLI1 2 OTTHUMG00000167332.2 +18451 chr12 HAVANA gene 57472255 57488814 5127.0 - 0 ENSG00000123329.17 protein_coding ARHGAP9 1 OTTHUMG00000150147.6 +18452 chr12 ENSEMBL gene 57512688 57512750 63.0 + 0 ENSG00000284152.1 miRNA MIR6758 3 +18453 chr12 HAVANA gene 57475445 57517569 7028.0 + 0 ENSG00000166986.14 protein_coding MARS 1 OTTHUMG00000169996.5 ncRNA_host +18454 chr12 ENSEMBL gene 57519163 57519259 97.0 - 0 ENSG00000208028.1 miRNA MIR616 3 +18455 chr12 HAVANA gene 57517712 57520480 105.0 - 0 ENSG00000285133.1 protein_coding AC022506.1 2 OTTHUMG00000192619.1 ncRNA_host,overlapping_locus +18456 chr12 HAVANA gene 57516588 57521737 1307.0 - 0 ENSG00000175197.12 protein_coding DDIT3 2 OTTHUMG00000170046.4 ncRNA_host,overlapping_locus +18457 chr12 HAVANA gene 57520710 57530148 5646.0 + 0 ENSG00000166987.14 protein_coding MBD6 2 OTTHUMG00000170099.3 +18458 chr12 HAVANA gene 57530102 57547331 4217.0 - 0 ENSG00000175203.15 protein_coding DCTN2 1 OTTHUMG00000170124.5 +18459 chr12 HAVANA gene 57549998 57586632 6261.0 + 0 ENSG00000155980.11 protein_coding KIF5A 2 OTTHUMG00000170143.1 +18460 chr12 HAVANA gene 57591174 57603418 3299.0 + 0 ENSG00000166908.17 protein_coding PIP4K2C 1 OTTHUMG00000170144.4 +18461 chr12 HAVANA gene 57604622 57609804 4087.0 + 0 ENSG00000178498.15 protein_coding DTX3 2 OTTHUMG00000170189.2 +18462 chr12 HAVANA gene 57610180 57619379 3503.0 + 0 ENSG00000240771.6 protein_coding ARHGEF25 2 OTTHUMG00000152516.3 +18463 chr12 HAVANA gene 57612118 57619638 2600.0 - 0 ENSG00000224713.4 antisense AC025165.1 2 OTTHUMG00000152518.4 +18464 chr12 HAVANA gene 57619527 57626151 4276.0 + 0 ENSG00000135502.17 protein_coding SLC26A10 2 OTTHUMG00000128505.4 +18465 chr12 HAVANA gene 57623410 57633355 8003.0 - 0 ENSG00000135454.13 protein_coding B4GALNT1 1 OTTHUMG00000170190.5 +18466 chr12 HAVANA gene 57674665 57675250 586.0 + 0 ENSG00000242990.2 processed_pseudogene RPL13AP23 1 OTTHUMG00000157582.2 pseudo_consens +18467 chr12 HAVANA gene 57694132 57721510 699.0 - 0 ENSG00000257342.1 antisense AC025165.2 2 OTTHUMG00000170379.1 +18468 chr12 HAVANA gene 57693955 57721557 5169.0 + 0 ENSG00000135506.15 protein_coding OS9 1 OTTHUMG00000170284.2 +18469 chr12 HAVANA gene 57726271 57728356 1500.0 + 0 ENSG00000255737.2 antisense AGAP2-AS1 1 OTTHUMG00000170286.1 +18470 chr12 HAVANA gene 57723761 57742157 6728.0 - 0 ENSG00000135439.11 protein_coding AGAP2 2 OTTHUMG00000170285.5 +18471 chr12 ENSEMBL gene 57748618 57748682 65.0 - 0 ENSG00000283621.1 miRNA MIR6759 3 +18472 chr12 HAVANA gene 57738013 57750211 5385.0 + 0 ENSG00000135452.9 protein_coding TSPAN31 1 OTTHUMG00000170381.2 +18473 chr12 HAVANA gene 57747727 57756013 3168.0 - 0 ENSG00000135446.16 protein_coding CDK4 1 OTTHUMG00000170382.5 ncRNA_host +18474 chr12 HAVANA gene 57755098 57760407 4005.0 + 0 ENSG00000139266.5 protein_coding MARCH9 2 OTTHUMG00000170456.1 +18475 chr12 HAVANA gene 57762334 57768986 3440.0 - 0 ENSG00000111012.9 protein_coding CYP27B1 2 OTTHUMG00000170457.3 overlapping_locus +18476 chr12 HAVANA gene 57768471 57772793 2621.0 - 0 ENSG00000037897.16 protein_coding METTL1 2 OTTHUMG00000150143.5 overlapping_locus +18477 chr12 HAVANA gene 57771492 57782541 3172.0 + 0 ENSG00000123427.16 protein_coding EEF1AKMT3 1 OTTHUMG00000170459.1 overlapping_locus +18478 chr12 HAVANA gene 57773028 57787046 679.0 + 0 ENSG00000257921.5 protein_coding AC025165.3 2 OTTHUMG00000170460.3 overlapping_locus +18479 chr12 HAVANA gene 57803838 57804415 578.0 + 0 ENSG00000270039.1 lincRNA AC025165.5 2 OTTHUMG00000183984.1 overlapping_locus +18480 chr12 ENSEMBL gene 57806154 57806260 107.0 - 0 ENSG00000206749.1 snRNA RNU6-1083P 3 +18481 chr12 HAVANA gene 57782589 57808071 3094.0 + 0 ENSG00000123297.17 protein_coding TSFM 1 OTTHUMG00000153042.11 overlapping_locus +18482 chr12 HAVANA gene 57814494 57814926 433.0 + 0 ENSG00000269903.1 lincRNA AC025165.4 2 OTTHUMG00000183985.1 +18483 chr12 HAVANA gene 57797376 57818704 5889.0 - 0 ENSG00000135407.10 protein_coding AVIL 2 OTTHUMG00000170461.3 ncRNA_host +18484 chr12 ENSEMBL gene 57824609 57824692 84.0 - 0 ENSG00000207789.1 miRNA MIR26A2 3 +18485 chr12 HAVANA gene 57837092 57842745 610.0 + 0 ENSG00000257953.1 antisense AC083805.2 2 OTTHUMG00000170484.1 +18486 chr12 HAVANA gene 57819927 57846739 5442.0 - 0 ENSG00000175215.10 protein_coding CTDSP2 1 OTTHUMG00000170483.2 ncRNA_host +18487 chr12 HAVANA gene 57869835 57896482 3843.0 - 0 ENSG00000245651.2 lincRNA AC083805.1 2 OTTHUMG00000170485.2 +18488 chr12 HAVANA gene 57894232 57896846 1315.0 + 0 ENSG00000273805.1 antisense AC083805.3 2 OTTHUMG00000187457.1 +18489 chr12 HAVANA gene 57931528 57936175 1312.0 - 0 ENSG00000257698.1 lincRNA AC084033.3 2 OTTHUMG00000170492.1 +18490 chr12 HAVANA gene 57906039 57959148 3327.0 + 0 ENSG00000166896.8 protein_coding ATP23 2 OTTHUMG00000170493.2 +18491 chr12 HAVANA gene 57967058 57968399 633.0 + 0 ENSG00000257159.1 processed_pseudogene AC084033.1 2 OTTHUMG00000170494.1 +18492 chr12 ENSEMBL gene 57977965 57978277 313.0 - 0 ENSG00000222210.1 misc_RNA RN7SKP65 3 +18493 chr12 HAVANA gene 57983795 57984761 967.0 - 0 ENSG00000257668.1 processed_pseudogene AC084033.2 1 OTTHUMG00000170495.1 pseudo_consens +18494 chr12 HAVANA gene 58087892 58093362 484.0 + 0 ENSG00000257541.1 lincRNA LINC02403 2 OTTHUMG00000170496.2 +18495 chr12 HAVANA gene 58094914 58098013 3100.0 - 0 ENSG00000279134.1 TEC AC090643.1 2 OTTHUMG00000172889.1 +18496 chr12 HAVANA gene 58103907 58105935 2029.0 + 0 ENSG00000279411.1 TEC AC090643.2 2 OTTHUMG00000172890.1 +18497 chr12 HAVANA gene 58244378 58244865 488.0 + 0 ENSG00000241423.2 processed_pseudogene RPL21P103 1 OTTHUMG00000157583.2 pseudo_consens +18498 chr12 HAVANA gene 58394596 58395138 543.0 + 0 ENSG00000258133.1 processed_pseudogene AC025578.1 1 OTTHUMG00000169939.2 pseudo_consens +18499 chr12 HAVANA gene 58565959 58781747 2387.0 - 0 ENSG00000257259.2 lincRNA LINC02388 2 OTTHUMG00000169964.2 +18500 chr12 HAVANA gene 58544124 58813060 1729.0 + 0 ENSG00000258231.5 lincRNA AC020637.1 1 OTTHUMG00000169963.2 +18501 chr12 HAVANA gene 58872149 58920522 5893.0 - 0 ENSG00000139263.11 protein_coding LRIG3 2 OTTHUMG00000169940.2 +18502 chr12 HAVANA gene 59020169 59020894 726.0 + 0 ENSG00000244390.2 processed_pseudogene RPS6P22 1 OTTHUMG00000157585.2 pseudo_consens,overlapping_locus +18503 chr12 HAVANA gene 59052980 59054184 1205.0 - 0 ENSG00000257288.1 processed_pseudogene AC068305.1 1 OTTHUMG00000169942.1 pseudo_consens +18504 chr12 HAVANA gene 58920639 59064238 555.0 + 0 ENSG00000257443.1 antisense AC068305.2 2 OTTHUMG00000169941.1 overlapping_locus +18505 chr12 ENSEMBL gene 59369051 59369151 101.0 - 0 ENSG00000212599.1 snRNA RNU6-279P 3 +18506 chr12 HAVANA gene 59366218 59411171 348.0 - 0 ENSG00000258214.1 lincRNA AC108721.1 2 OTTHUMG00000169921.1 ncRNA_host +18507 chr12 ENSEMBL gene 59450673 59450772 100.0 - 0 ENSG00000251931.1 snRNA RNU6-871P 3 +18508 chr12 HAVANA gene 59523278 59524184 583.0 - 0 ENSG00000257230.1 lincRNA LINC02448 2 OTTHUMG00000169922.1 +18509 chr12 ENSEMBL gene 59586793 59586943 151.0 - 0 ENSG00000202471.1 snRNA RNU4-20P 3 +18510 chr12 HAVANA gene 59719698 59719944 247.0 - 0 ENSG00000257146.1 processed_pseudogene AC079905.2 2 OTTHUMG00000169924.1 +18511 chr12 HAVANA gene 59596067 59789855 13665.0 + 0 ENSG00000118596.11 protein_coding SLC16A7 1 OTTHUMG00000169923.5 +18512 chr12 HAVANA gene 59812102 59812576 475.0 + 0 ENSG00000237176.4 processed_pseudogene AC079905.1 1 OTTHUMG00000169925.1 pseudo_consens +18513 chr12 HAVANA gene 60092864 60096071 989.0 + 0 ENSG00000257294.2 lincRNA AC080011.1 2 OTTHUMG00000169926.2 +18514 chr12 HAVANA gene 60215994 60216384 391.0 + 0 ENSG00000258184.1 processed_pseudogene AC087883.1 1 OTTHUMG00000169927.1 pseudo_consens +18515 chr12 ENSEMBL gene 60341824 60341941 118.0 - 0 ENSG00000252607.1 misc_RNA RF00019 3 +18516 chr12 ENSEMBL gene 60363822 60363935 114.0 + 0 ENSG00000251822.1 snoRNA RF00413 3 +18517 chr12 HAVANA gene 60418983 60419293 311.0 + 0 ENSG00000257865.1 processed_pseudogene AC090022.1 1 OTTHUMG00000169928.1 pseudo_consens +18518 chr12 HAVANA gene 61231159 61232937 1779.0 - 0 ENSG00000257308.1 processed_pseudogene AC090017.1 2 OTTHUMG00000169972.1 +18519 chr12 HAVANA gene 61600067 61600843 777.0 - 0 ENSG00000258336.2 processed_pseudogene DUX4L52 2 OTTHUMG00000169973.2 +18520 chr12 HAVANA gene 61775923 61776400 478.0 + 0 ENSG00000242922.2 processed_pseudogene RPL21P104 1 OTTHUMG00000157593.2 pseudo_consens +18521 chr12 HAVANA gene 61879318 61880772 1455.0 + 0 ENSG00000257528.1 processed_pseudogene KRT8P19 1 OTTHUMG00000170204.1 pseudo_consens +18522 chr12 HAVANA gene 62021570 62022174 605.0 - 0 ENSG00000213363.4 processed_pseudogene RPS3P6 1 OTTHUMG00000157595.1 pseudo_consens,overlapping_locus +18523 chr12 HAVANA gene 62139999 62145643 477.0 - 0 ENSG00000257880.1 sense_intronic AC078789.1 2 OTTHUMG00000170224.1 overlapping_locus +18524 chr12 HAVANA gene 62234390 62235515 1126.0 - 0 ENSG00000258316.1 processed_pseudogene KLF17P1 2 OTTHUMG00000170205.1 overlapping_locus +18525 chr12 ENSEMBL gene 62260359 62260454 96.0 + 0 ENSG00000284360.1 miRNA MIR6125 3 +18526 chr12 HAVANA gene 61708259 62279150 9255.0 - 0 ENSG00000198673.10 protein_coding FAM19A2 1 OTTHUMG00000170207.6 overlapping_locus +18527 chr12 ENSEMBL gene 62334091 62334197 107.0 - 0 ENSG00000200814.1 snRNA RNU6-595P 3 +18528 chr12 ENSEMBL gene 62393607 62393880 274.0 - 0 ENSG00000275881.1 misc_RNA RF00017 3 +18529 chr12 HAVANA gene 62260338 62417431 19418.0 + 0 ENSG00000135655.15 protein_coding USP15 1 OTTHUMG00000170186.6 ncRNA_host +18530 chr12 HAVANA gene 62482349 62484932 848.0 - 0 ENSG00000257568.1 antisense AC079035.1 2 OTTHUMG00000170015.1 +18531 chr12 ENSEMBL gene 62545582 62545679 98.0 - 0 ENSG00000202034.1 snRNA RNU6-399P 3 +18532 chr12 HAVANA gene 62466817 62600479 16014.0 + 0 ENSG00000061987.15 protein_coding MON2 1 OTTHUMG00000169992.7 +18533 chr12 HAVANA gene 62601751 62603690 1940.0 - 0 ENSG00000221949.5 lincRNA LINC01465 2 OTTHUMG00000169983.2 +18534 chr12 ENSEMBL gene 62603686 62603769 84.0 + 0 ENSG00000199179.3 miRNA MIRLET7I 3 +18535 chr12 HAVANA gene 62603909 62604399 491.0 + 0 ENSG00000275180.1 lincRNA AC048341.2 2 OTTHUMG00000187150.1 overlapping_locus +18536 chr12 HAVANA gene 62602752 62622213 8693.0 + 0 ENSG00000257354.2 lincRNA AC048341.1 2 OTTHUMG00000169989.2 ncRNA_host,overlapping_locus +18537 chr12 HAVANA gene 62658823 62659225 403.0 + 0 ENSG00000241941.2 processed_pseudogene RPL32P26 1 OTTHUMG00000157597.2 pseudo_consens +18538 chr12 HAVANA gene 62755227 62756233 1007.0 + 0 ENSG00000213352.3 processed_pseudogene GAPDHP44 1 OTTHUMG00000160001.1 pseudo_consens +18539 chr12 ENSEMBL gene 62850738 62850901 164.0 - 0 ENSG00000200296.1 snRNA RNU1-83P 3 +18540 chr12 HAVANA gene 62643982 62935037 7063.0 - 0 ENSG00000111110.11 protein_coding PPM1H 2 OTTHUMG00000169990.2 ncRNA_host +18541 chr12 ENSEMBL gene 62935701 62935802 102.0 + 0 ENSG00000252660.1 misc_RNA RF00019 3 +18542 chr12 HAVANA gene 62965325 62965969 645.0 + 0 ENSG00000139239.7 processed_pseudogene RPL14P1 2 OTTHUMG00000157598.1 +18543 chr12 HAVANA gene 63002469 63002795 327.0 + 0 ENSG00000257779.1 processed_pseudogene AC078814.2 1 OTTHUMG00000169977.1 pseudo_consens +18544 chr12 HAVANA gene 63004338 63006541 535.0 - 0 ENSG00000257235.1 lincRNA AC078814.1 2 OTTHUMG00000169978.1 +18545 chr12 HAVANA gene 63003553 63006902 3350.0 + 0 ENSG00000250517.2 transcribed_processed_pseudogene LDHAL6CP 1 OTTHUMG00000160114.2 pseudo_consens +18546 chr12 HAVANA gene 63055275 63055765 491.0 - 0 ENSG00000257664.1 processed_pseudogene RSL24D1P5 1 OTTHUMG00000169979.1 pseudo_consens +18547 chr12 HAVANA gene 63142759 63150942 5963.0 - 0 ENSG00000166148.3 protein_coding AVPR1A 1 OTTHUMG00000169980.2 +18548 chr12 HAVANA gene 63151065 63154006 333.0 + 0 ENSG00000279444.1 TEC AC135584.1 2 OTTHUMG00000169981.1 +18549 chr12 HAVANA gene 63271404 63272336 933.0 + 0 ENSG00000257332.1 processed_pseudogene HNRNPA1P69 1 OTTHUMG00000169982.1 pseudo_consens +18550 chr12 HAVANA gene 63292625 63360037 474.0 - 0 ENSG00000258117.2 lincRNA AC026116.1 2 OTTHUMG00000169974.2 +18551 chr12 HAVANA gene 63651627 63651930 304.0 + 0 ENSG00000257005.1 processed_pseudogene AC027667.1 1 OTTHUMG00000168727.1 pseudo_consens +18552 chr12 HAVANA gene 63558913 63668939 5646.0 - 0 ENSG00000177990.11 protein_coding DPY19L2 2 OTTHUMG00000168712.5 overlapping_locus +18553 chr12 HAVANA gene 63682523 63724935 2911.0 - 0 ENSG00000255583.2 transcribed_unprocessed_pseudogene AC084357.3 2 OTTHUMG00000168728.2 overlapping_locus +18554 chr12 HAVANA gene 63760358 63760612 255.0 - 0 ENSG00000240027.2 processed_pseudogene AC084357.1 1 OTTHUMG00000157600.2 pseudo_consens,overlapping_locus +18555 chr12 HAVANA gene 63623788 63795718 275.0 - 0 ENSG00000249753.2 antisense AC084357.2 2 OTTHUMG00000168726.1 overlapping_locus +18556 chr12 HAVANA gene 63779803 63809558 7804.0 + 0 ENSG00000118600.11 protein_coding RXYLT1 1 OTTHUMG00000168730.1 +18557 chr12 HAVANA gene 63804739 63822156 1835.0 - 0 ENSG00000255850.2 antisense RXYLT1-AS1 2 OTTHUMG00000168731.2 +18558 chr12 HAVANA gene 63822021 63823895 1875.0 + 0 ENSG00000255642.1 processed_pseudogene PABPC1P4 1 OTTHUMG00000168749.1 pseudo_consens +18559 chr12 HAVANA gene 63871739 63872044 306.0 - 0 ENSG00000242087.2 processed_pseudogene RPL36AP41 1 OTTHUMG00000157601.2 pseudo_consens +18560 chr12 HAVANA gene 63878787 63879474 515.0 + 0 ENSG00000256571.1 sense_intronic AC079866.2 2 OTTHUMG00000168751.1 overlapping_locus +18561 chr12 HAVANA gene 63887379 63888598 1220.0 - 0 ENSG00000256399.1 processed_pseudogene AC079866.1 1 OTTHUMG00000168752.1 pseudo_consens +18562 chr12 HAVANA gene 64032412 64032665 254.0 + 0 ENSG00000255780.1 processed_pseudogene AC020611.1 2 OTTHUMG00000168753.1 overlapping_locus +18563 chr12 HAVANA gene 64038562 64097618 671.0 - 0 ENSG00000255886.1 antisense AC020611.2 1 OTTHUMG00000168754.1 +18564 chr12 HAVANA gene 64108763 64120489 390.0 - 0 ENSG00000255817.1 antisense AC025576.2 2 OTTHUMG00000168755.1 +18565 chr12 HAVANA gene 64146388 64147857 462.0 - 0 ENSG00000255629.1 antisense AC025576.1 2 OTTHUMG00000168756.1 +18566 chr12 HAVANA gene 63844293 64162221 26641.0 + 0 ENSG00000196935.8 protein_coding SRGAP1 2 OTTHUMG00000168750.2 overlapping_locus +18567 chr12 ENSEMBL gene 64204793 64204899 107.0 + 0 ENSG00000212298.1 snRNA RNU6-1009P 3 +18568 chr12 HAVANA gene 64186316 64222296 5999.0 - 0 ENSG00000174206.12 protein_coding C12orf66 1 OTTHUMG00000168763.3 +18569 chr12 ENSEMBL gene 64228560 64228675 116.0 - 0 ENSG00000251788.1 snRNA RNU5A-7P 3 +18570 chr12 HAVANA gene 64266413 64266766 354.0 + 0 ENSG00000256192.1 processed_pseudogene AC012158.2 2 OTTHUMG00000168781.1 overlapping_locus +18571 chr12 HAVANA gene 64338178 64338797 620.0 - 0 ENSG00000256293.2 processed_pseudogene AC135279.2 1 OTTHUMG00000168783.2 pseudo_consens,overlapping_locus +18572 chr12 ENSEMBL gene 64355762 64355865 104.0 - 0 ENSG00000238440.1 snoRNA RF01210 3 +18573 chr12 HAVANA gene 64264762 64391192 5504.0 - 0 ENSG00000185306.12 protein_coding C12orf56 1 OTTHUMG00000168782.4 ncRNA_host,overlapping_locus +18574 chr12 HAVANA gene 64222337 64397065 2138.0 + 0 ENSG00000243024.6 transcribed_processed_pseudogene AC012158.1 1 OTTHUMG00000157605.2 pseudo_consens,overlapping_locus +18575 chr12 HAVANA gene 64442510 64443330 504.0 - 0 ENSG00000255566.1 processed_pseudogene AC135279.1 1 OTTHUMG00000168809.1 pseudo_consens +18576 chr12 HAVANA gene 64404350 64451127 7364.0 + 0 ENSG00000184575.11 protein_coding XPOT 2 OTTHUMG00000168794.3 +18577 chr12 HAVANA gene 64451591 64452901 1311.0 - 0 ENSG00000277895.1 antisense AC135279.3 2 OTTHUMG00000168795.1 +18578 chr12 HAVANA gene 64451880 64502108 4762.0 + 0 ENSG00000183735.9 protein_coding TBK1 2 OTTHUMG00000168796.2 +18579 chr12 HAVANA gene 64507166 64533638 712.0 - 0 ENSG00000256199.1 antisense AC078962.2 1 OTTHUMG00000168810.1 +18580 chr12 ENSEMBL gene 64575665 64575741 77.0 + 0 ENSG00000223294.1 snoRNA RF00137 3 +18581 chr12 HAVANA gene 64599078 64609459 254.0 - 0 ENSG00000256670.1 antisense AC078962.4 1 OTTHUMG00000168811.1 +18582 chr12 ENSEMBL gene 64622509 64622605 97.0 + 0 ENSG00000207546.1 miRNA MIR548C 3 +18583 chr12 ENSEMBL gene 64622509 64622605 97.0 - 0 ENSG00000266016.3 miRNA MIR548Z 3 +18584 chr12 HAVANA gene 64628344 64629976 281.0 + 0 ENSG00000225195.2 sense_intronic AC078962.1 2 OTTHUMG00000168813.1 overlapping_locus +18585 chr12 HAVANA gene 64654060 64655019 482.0 - 0 ENSG00000256314.1 antisense AC078962.3 2 OTTHUMG00000168814.1 +18586 chr12 HAVANA gene 64696191 64696550 360.0 - 0 ENSG00000280320.1 TEC AC025262.3 2 OTTHUMG00000187454.1 +18587 chr12 HAVANA gene 64507001 64697567 4226.0 + 0 ENSG00000153179.12 protein_coding RASSF3 2 OTTHUMG00000168812.2 ncRNA_host,overlapping_locus +18588 chr12 HAVANA gene 64709458 64710513 1056.0 + 0 ENSG00000280181.1 TEC AC025262.2 2 OTTHUMG00000172918.1 +18589 chr12 HAVANA gene 64713445 64759447 6284.0 - 0 ENSG00000135677.10 protein_coding GNS 1 OTTHUMG00000168819.4 +18590 chr12 HAVANA gene 64759521 64779318 589.0 + 0 ENSG00000215159.3 antisense AC025262.1 1 OTTHUMG00000168823.1 +18591 chr12 HAVANA gene 64867956 64868699 744.0 - 0 ENSG00000243020.1 processed_pseudogene RPL7P39 1 OTTHUMG00000157607.1 pseudo_consens +18592 chr12 HAVANA gene 64780516 64881032 9325.0 + 0 ENSG00000111490.13 protein_coding TBC1D30 2 OTTHUMG00000168824.3 +18593 chr12 ENSEMBL gene 64939023 64939117 95.0 + 0 ENSG00000221564.1 snRNA RNU6ATAC42P 3 +18594 chr12 HAVANA gene 64920845 64982524 447.0 - 0 ENSG00000248995.2 lincRNA LINC02231 1 OTTHUMG00000168830.1 +18595 chr12 HAVANA gene 64883394 64990607 5740.0 + 0 ENSG00000255693.2 lincRNA LINC02389 2 OTTHUMG00000168829.2 ncRNA_host +18596 chr12 HAVANA gene 65017468 65054124 1058.0 + 0 ENSG00000198671.3 antisense AC135895.1 2 OTTHUMG00000168839.2 +18597 chr12 ENSEMBL gene 65095749 65095855 107.0 + 0 ENSG00000207099.1 snRNA RNU6-166P 3 +18598 chr12 HAVANA gene 65050626 65121566 2368.0 - 0 ENSG00000156076.9 protein_coding WIF1 2 OTTHUMG00000168832.4 +18599 chr12 HAVANA gene 65134688 65135273 586.0 + 0 ENSG00000255700.2 processed_pseudogene APOOP3 1 OTTHUMG00000168865.2 pseudo_consens +18600 chr12 HAVANA gene 65171262 65171917 656.0 + 0 ENSG00000276853.1 sense_intronic AC026124.2 2 OTTHUMG00000187155.1 overlapping_locus +18601 chr12 HAVANA gene 65169571 65248327 5562.0 + 0 ENSG00000174106.2 protein_coding LEMD3 2 OTTHUMG00000168840.2 overlapping_locus +18602 chr12 HAVANA gene 65281657 65286728 3457.0 + 0 ENSG00000250280.2 sense_intronic AC026124.1 2 OTTHUMG00000168867.1 overlapping_locus +18603 chr12 HAVANA gene 65418731 65420027 1297.0 - 0 ENSG00000215208.3 processed_pseudogene KRT18P60 1 OTTHUMG00000168871.1 pseudo_consens +18604 chr12 HAVANA gene 65278643 65491430 7405.0 + 0 ENSG00000174099.11 protein_coding MSRB3 1 OTTHUMG00000168866.6 overlapping_locus +18605 chr12 HAVANA gene 65559591 65560889 443.0 + 0 ENSG00000255866.1 lincRNA AC090023.1 1 OTTHUMG00000168876.1 +18606 chr12 HAVANA gene 65602869 65612997 895.0 + 0 ENSG00000256268.1 lincRNA LINC02454 1 OTTHUMG00000168899.1 +18607 chr12 HAVANA gene 65466820 65642372 4293.0 - 0 ENSG00000250748.6 lincRNA AC025419.1 2 OTTHUMG00000168872.1 +18608 chr12 HAVANA gene 65645992 65646462 471.0 - 0 ENSG00000213344.2 processed_pseudogene PCNPP3 1 OTTHUMG00000168873.1 pseudo_consens +18609 chr12 HAVANA gene 65644334 65663299 701.0 + 0 ENSG00000256915.1 lincRNA AC090023.2 2 OTTHUMG00000168900.1 +18610 chr12 HAVANA gene 65758020 65826997 2035.0 - 0 ENSG00000241749.4 transcribed_processed_pseudogene RPSAP52 1 OTTHUMG00000157608.3 pseudo_consens +18611 chr12 HAVANA gene 65830750 65831050 301.0 + 0 ENSG00000277945.1 sense_intronic AC107308.1 2 OTTHUMG00000187156.1 overlapping_locus +18612 chr12 HAVANA gene 65851340 65882167 6033.0 - 0 ENSG00000197301.7 antisense AC090673.1 1 OTTHUMG00000168956.1 +18613 chr12 HAVANA gene 65934777 65948479 454.0 - 0 ENSG00000256083.1 antisense AC090673.2 2 OTTHUMG00000168957.1 +18614 chr12 HAVANA gene 65824131 65966295 15403.0 + 0 ENSG00000149948.13 protein_coding HMGA2 2 OTTHUMG00000168936.2 overlapping_locus +18615 chr12 ENSEMBL gene 66023620 66023726 107.0 - 0 ENSG00000276878.1 miRNA MIR6074 3 +18616 chr12 HAVANA gene 66027725 66031066 376.0 - 0 ENSG00000256259.1 lincRNA LINC02425 2 OTTHUMG00000168958.1 +18617 chr12 HAVANA gene 66037235 66037714 480.0 + 0 ENSG00000213343.5 processed_pseudogene RPL21P18 1 OTTHUMG00000157609.2 pseudo_consens +18618 chr12 ENSEMBL gene 66066221 66066338 118.0 + 0 ENSG00000251857.1 rRNA_pseudogene RNA5SP362 3 +18619 chr12 HAVANA gene 66116555 66130768 7993.0 - 0 ENSG00000139233.6 protein_coding LLPH 2 OTTHUMG00000168959.3 overlapping_locus +18620 chr12 HAVANA gene 66130751 66134449 623.0 + 0 ENSG00000239335.4 antisense LLPH-DT 1 OTTHUMG00000168960.1 +18621 chr12 HAVANA gene 66123917 66169985 984.0 - 0 ENSG00000228144.2 protein_coding AC078927.1 2 OTTHUMG00000168972.1 overlapping_locus +18622 chr12 HAVANA gene 66135846 66170072 4137.0 - 0 ENSG00000155957.17 protein_coding TMBIM4 1 OTTHUMG00000168973.5 overlapping_locus +18623 chr12 HAVANA gene 66234079 66235234 1156.0 - 0 ENSG00000225422.4 processed_pseudogene RBMS1P1 1 OTTHUMG00000169003.2 pseudo_consens +18624 chr12 ENSEMBL gene 66251082 66251157 76.0 + 0 ENSG00000284011.1 miRNA MIR6502 3 +18625 chr12 HAVANA gene 66188879 66254622 10004.0 + 0 ENSG00000090376.10 protein_coding IRAK3 2 OTTHUMG00000169002.1 ncRNA_host +18626 chr12 HAVANA gene 66251745 66257434 523.0 - 0 ENSG00000256072.1 antisense AC078889.1 2 OTTHUMG00000169004.1 +18627 chr12 HAVANA gene 66275940 66276651 712.0 - 0 ENSG00000256777.1 processed_pseudogene PDCL3P7 1 OTTHUMG00000169005.1 pseudo_consens +18628 chr12 ENSEMBL gene 66292683 66292987 305.0 + 0 ENSG00000222744.1 misc_RNA RN7SKP166 3 +18629 chr12 HAVANA gene 66302545 66347645 13796.0 + 0 ENSG00000127311.9 protein_coding HELB 2 OTTHUMG00000169006.2 +18630 chr12 HAVANA gene 66563524 66563694 171.0 + 0 ENSG00000256285.1 processed_pseudogene OSBPL9P5 1 OTTHUMG00000169031.1 pseudo_consens +18631 chr12 HAVANA gene 66563967 66569194 1800.0 - 0 ENSG00000256420.1 processed_pseudogene OSBPL9P4 1 OTTHUMG00000169032.1 pseudo_consens,overlapping_locus +18632 chr12 HAVANA gene 67065018 67065278 261.0 - 0 ENSG00000279310.1 TEC AC073530.2 2 OTTHUMG00000169049.1 overlapping_locus +18633 chr12 HAVANA gene 66347431 67069162 6570.0 - 0 ENSG00000155974.12 protein_coding GRIP1 1 OTTHUMG00000169019.7 overlapping_locus +18634 chr12 HAVANA gene 67035508 67096406 1093.0 - 0 ENSG00000257083.5 lincRNA AC073530.1 2 OTTHUMG00000169070.1 overlapping_locus +18635 chr12 HAVANA gene 67131567 67132205 639.0 - 0 ENSG00000255976.1 processed_pseudogene RAB11AP2 1 OTTHUMG00000169050.1 pseudo_consens +18636 chr12 HAVANA gene 67265842 67266966 1125.0 - 0 ENSG00000237766.2 processed_pseudogene GGTA2P 1 OTTHUMG00000169051.1 pseudo_consens +18637 chr12 HAVANA gene 67269281 67319951 13655.0 + 0 ENSG00000111530.12 protein_coding CAND1 1 OTTHUMG00000169060.2 +18638 chr12 HAVANA gene 67351436 67352039 604.0 + 0 ENSG00000256037.1 processed_pseudogene MRPL40P1 1 OTTHUMG00000169066.1 pseudo_consens +18639 chr12 HAVANA gene 67424272 67424986 715.0 - 0 ENSG00000256355.1 processed_pseudogene NTAN1P3 1 OTTHUMG00000169067.1 pseudo_consens +18640 chr12 HAVANA gene 67440998 67442559 741.0 - 0 ENSG00000256172.1 lincRNA LINC02420 1 OTTHUMG00000169068.1 +18641 chr12 HAVANA gene 67571197 67589987 574.0 - 0 ENSG00000256077.5 lincRNA LINC02442 1 OTTHUMG00000169088.3 +18642 chr12 HAVANA gene 67443105 67590771 2954.0 + 0 ENSG00000203585.4 lincRNA LINC02408 2 OTTHUMG00000169069.2 +18643 chr12 HAVANA gene 67648338 67665406 9494.0 + 0 ENSG00000127334.10 protein_coding DYRK2 2 OTTHUMG00000169089.3 +18644 chr12 HAVANA gene 67658991 67670919 777.0 - 0 ENSG00000235872.2 antisense AC078777.1 1 OTTHUMG00000169090.1 +18645 chr12 HAVANA gene 67709047 67729475 3135.0 - 0 ENSG00000255970.1 lincRNA LINC02421 2 OTTHUMG00000169091.1 +18646 chr12 HAVANA gene 67753701 67753817 117.0 + 0 ENSG00000279505.1 TEC AC022513.1 2 OTTHUMG00000172893.1 +18647 chr12 HAVANA gene 67929235 67970017 715.0 + 0 ENSG00000255772.5 lincRNA LINC01479 1 OTTHUMG00000169106.1 +18648 chr12 HAVANA gene 67978107 67978387 281.0 - 0 ENSG00000256835.1 processed_pseudogene AC005294.1 2 OTTHUMG00000169107.1 +18649 chr12 HAVANA gene 68001394 68001548 155.0 - 0 ENSG00000244432.2 processed_pseudogene RPL39P28 1 OTTHUMG00000157610.2 pseudo_consens +18650 chr12 HAVANA gene 68035767 68036853 1087.0 + 0 ENSG00000236946.2 processed_pseudogene HNRNPA1P70 1 OTTHUMG00000169109.1 pseudo_consens,overlapping_locus +18651 chr12 HAVANA gene 68143318 68143690 373.0 + 0 ENSG00000256708.1 processed_pseudogene AC007458.1 1 OTTHUMG00000169112.1 pseudo_consens,overlapping_locus +18652 chr12 HAVANA gene 68154768 68159747 1218.0 - 0 ENSG00000111537.4 protein_coding IFNG 2 OTTHUMG00000169113.1 +18653 chr12 HAVANA gene 68201351 68225821 1075.0 - 0 ENSG00000111536.4 protein_coding IL26 2 OTTHUMG00000169114.1 +18654 chr12 HAVANA gene 67989445 68234686 2125.0 + 0 ENSG00000255733.5 antisense IFNG-AS1 2 OTTHUMG00000169108.1 overlapping_locus +18655 chr12 HAVANA gene 68248242 68253604 1173.0 - 0 ENSG00000127318.11 protein_coding IL22 2 OTTHUMG00000169119.2 +18656 chr12 HAVANA gene 68272443 68332381 6549.0 - 0 ENSG00000111554.14 protein_coding MDM1 1 OTTHUMG00000169136.3 +18657 chr12 HAVANA gene 68344664 68349959 476.0 + 0 ENSG00000256273.1 lincRNA AC022511.1 1 OTTHUMG00000169138.1 +18658 chr12 HAVANA gene 68426331 68427737 1407.0 - 0 ENSG00000273824.1 lincRNA AC008033.3 2 OTTHUMG00000169140.1 overlapping_locus +18659 chr12 HAVANA gene 68332888 68451663 2695.0 - 0 ENSG00000251301.6 lincRNA LINC02384 1 OTTHUMG00000169139.2 overlapping_locus +18660 chr12 HAVANA gene 68473741 68474902 1162.0 + 0 ENSG00000256075.1 processed_pseudogene AC008033.1 1 OTTHUMG00000169188.1 pseudo_consens +18661 chr12 HAVANA gene 68487687 68487863 177.0 + 0 ENSG00000256917.1 processed_pseudogene AC008033.2 2 OTTHUMG00000169189.1 +18662 chr12 HAVANA gene 68552995 68553882 888.0 - 0 ENSG00000240087.3 processed_pseudogene RPSAP12 2 OTTHUMG00000157612.2 +18663 chr12 ENSEMBL gene 68575858 68576136 279.0 - 0 ENSG00000274459.1 misc_RNA RF00017 3 +18664 chr12 HAVANA gene 68626870 68627187 318.0 - 0 ENSG00000234040.3 processed_pseudogene RPL10P12 2 OTTHUMG00000169262.2 +18665 chr12 ENSEMBL gene 68627234 68627375 142.0 - 0 ENSG00000206650.1 snoRNA SNORA70G 3 +18666 chr12 HAVANA gene 68642519 68642993 475.0 - 0 ENSG00000234925.2 processed_pseudogene ATP5PDP4 1 OTTHUMG00000169263.1 pseudo_consens +18667 chr12 HAVANA gene 68610839 68671901 16942.0 + 0 ENSG00000127314.17 protein_coding RAP1B 2 OTTHUMG00000133660.7 +18668 chr12 HAVANA gene 68684595 68686308 679.0 + 0 ENSG00000241825.2 processed_pseudogene RPL7P42 1 OTTHUMG00000157614.2 pseudo_consens +18669 chr12 HAVANA gene 68674371 68687755 2845.0 - 0 ENSG00000247363.2 lincRNA AC090061.1 2 OTTHUMG00000169264.1 +18670 chr12 HAVANA gene 68705634 68707066 1433.0 + 0 ENSG00000233560.2 processed_pseudogene KRT8P39 1 OTTHUMG00000169266.1 pseudo_consens,overlapping_locus +18671 chr12 HAVANA gene 68686734 68745809 8320.0 + 0 ENSG00000111581.9 protein_coding NUP107 1 OTTHUMG00000169265.3 overlapping_locus +18672 chr12 HAVANA gene 68746106 68793964 19501.0 + 0 ENSG00000175782.9 protein_coding SLC35E3 1 OTTHUMG00000169282.2 +18673 chr12 HAVANA gene 68805011 68805479 469.0 - 0 ENSG00000256678.1 processed_pseudogene AC025423.3 1 OTTHUMG00000169170.2 pseudo_consens +18674 chr12 HAVANA gene 68828118 68828553 374.0 + 0 ENSG00000256325.1 antisense AC025423.1 2 OTTHUMG00000169168.1 overlapping_locus +18675 chr12 HAVANA gene 68841946 68842384 439.0 + 0 ENSG00000256664.1 processed_pseudogene AC025423.2 2 OTTHUMG00000169171.1 overlapping_locus +18676 chr12 HAVANA gene 68841288 68843237 785.0 - 0 ENSG00000257181.1 antisense AC025423.4 2 OTTHUMG00000169299.1 overlapping_locus +18677 chr12 HAVANA gene 68808176 68850686 13269.0 + 0 ENSG00000135679.23 protein_coding MDM2 1 OTTHUMG00000142827.11 overlapping_locus +18678 chr12 ENSEMBL gene 68911921 68911982 62.0 + 0 ENSG00000252770.1 snRNA RNU7-4P 3 +18679 chr12 HAVANA gene 68913804 68914022 219.0 + 0 ENSG00000257289.1 processed_pseudogene AC025423.5 1 OTTHUMG00000169301.1 pseudo_consens +18680 chr12 HAVANA gene 68957377 68957677 301.0 - 0 ENSG00000257336.1 processed_pseudogene PRELID2P1 1 OTTHUMG00000169302.1 pseudo_consens,overlapping_locus +18681 chr12 HAVANA gene 68842197 68971570 7535.0 - 0 ENSG00000135678.11 protein_coding CPM 2 OTTHUMG00000169300.2 overlapping_locus +18682 chr12 HAVANA gene 69212108 69224242 1749.0 + 0 ENSG00000258140.2 lincRNA AC127894.1 2 OTTHUMG00000169339.3 +18683 chr12 ENSEMBL gene 69273157 69273218 62.0 - 0 ENSG00000283476.1 miRNA MIR1279 3 +18684 chr12 HAVANA gene 69239537 69274358 7190.0 + 0 ENSG00000111605.17 protein_coding CPSF6 2 OTTHUMG00000169340.3 +18685 chr12 HAVANA gene 69284397 69285485 1089.0 + 0 ENSG00000257818.1 processed_pseudogene C1GALT1P1 1 OTTHUMG00000169341.1 pseudo_consens +18686 chr12 HAVANA gene 69326574 69331882 5309.0 - 0 ENSG00000274979.1 lincRNA AC020656.2 2 OTTHUMG00000187272.1 +18687 chr12 HAVANA gene 69353493 69354225 599.0 - 0 ENSG00000257764.2 antisense AC020656.1 2 OTTHUMG00000169357.1 +18688 chr12 HAVANA gene 69348341 69354234 1764.0 + 0 ENSG00000090382.6 protein_coding LYZ 1 OTTHUMG00000169342.2 +18689 chr12 HAVANA gene 69359703 69390796 1714.0 + 0 ENSG00000127337.6 protein_coding YEATS4 1 OTTHUMG00000169358.2 +18690 chr12 ENSEMBL gene 69400903 69401200 298.0 + 0 ENSG00000266185.2 misc_RNA RN7SL804P 3 +18691 chr12 HAVANA gene 69422656 69422995 340.0 + 0 ENSG00000241765.2 processed_pseudogene RPS26P45 1 OTTHUMG00000157615.2 pseudo_consens +18692 chr12 HAVANA gene 69449470 69460724 423.0 + 0 ENSG00000257507.1 lincRNA LINC02373 1 OTTHUMG00000169359.1 +18693 chr12 HAVANA gene 69470349 69579789 7242.0 + 0 ENSG00000166225.8 protein_coding FRS2 1 OTTHUMG00000169373.3 +18694 chr12 ENSEMBL gene 69584723 69584822 100.0 + 0 ENSG00000283677.1 miRNA MIR3913-2 3 +18695 chr12 ENSEMBL gene 69584722 69584823 102.0 - 0 ENSG00000264405.1 miRNA MIR3913-1 3 +18696 chr12 HAVANA gene 69585334 69601570 4322.0 + 0 ENSG00000166226.12 protein_coding CCT2 2 OTTHUMG00000169383.1 +18697 chr12 HAVANA gene 69608564 69611162 2599.0 - 0 ENSG00000198812.4 protein_coding LRRC10 2 OTTHUMG00000169384.1 +18698 chr12 HAVANA gene 69660034 69661429 1396.0 - 0 ENSG00000279551.1 TEC AC025263.3 2 OTTHUMG00000169397.1 overlapping_locus +18699 chr12 HAVANA gene 69643360 69699476 6863.0 - 0 ENSG00000127325.18 protein_coding BEST3 1 OTTHUMG00000149919.6 overlapping_locus +18700 chr12 HAVANA gene 69713633 69738568 2788.0 - 0 ENSG00000247131.5 antisense AC025263.1 2 OTTHUMG00000169398.1 +18701 chr12 HAVANA gene 69738681 69823204 12612.0 + 0 ENSG00000127328.21 protein_coding RAB3IP 2 OTTHUMG00000169437.2 overlapping_locus +18702 chr12 HAVANA gene 69801669 69855363 548.0 + 0 ENSG00000258052.1 protein_coding AC025263.2 2 OTTHUMG00000141317.3 overlapping_locus +18703 chr12 HAVANA gene 69946543 69947081 434.0 - 0 ENSG00000257241.1 antisense AC078922.1 2 OTTHUMG00000169446.1 overlapping_locus +18704 chr12 HAVANA gene 69825304 69959097 3524.0 + 0 ENSG00000166268.10 protein_coding MYRFL 2 OTTHUMG00000169438.2 overlapping_locus +18705 chr12 HAVANA gene 70180338 70202004 578.0 + 0 ENSG00000257139.1 lincRNA AC084032.1 1 OTTHUMG00000169447.1 +18706 chr12 HAVANA gene 70219132 70221862 629.0 - 0 ENSG00000257613.1 lincRNA LINC01481 1 OTTHUMG00000169448.1 overlapping_locus +18707 chr12 HAVANA gene 69904033 70243360 1490.0 - 0 ENSG00000257815.5 antisense LINC01481 2 OTTHUMG00000169445.1 overlapping_locus +18708 chr12 HAVANA gene 70321542 70324274 2733.0 - 0 ENSG00000279530.2 TEC AC092881.1 2 OTTHUMG00000192035.1 +18709 chr12 HAVANA gene 70242994 70354993 13993.0 + 0 ENSG00000111596.12 protein_coding CNOT2 1 OTTHUMG00000169481.6 +18710 chr12 HAVANA gene 70366276 70434292 4874.0 + 0 ENSG00000135643.4 protein_coding KCNMB4 2 OTTHUMG00000167586.1 +18711 chr12 ENSEMBL gene 70443784 70443923 140.0 - 0 ENSG00000222405.1 snRNA RNU4-65P 3 +18712 chr12 HAVANA gene 70468080 70543040 6368.0 + 0 ENSG00000258168.5 antisense AC025569.1 2 OTTHUMG00000169498.2 +18713 chr12 HAVANA gene 70570969 70571440 472.0 + 0 ENSG00000277247.1 antisense AC083809.1 2 OTTHUMG00000187275.1 +18714 chr12 HAVANA gene 70515866 70637440 14542.0 - 0 ENSG00000127329.15 protein_coding PTPRB 1 OTTHUMG00000169499.3 +18715 chr12 HAVANA gene 70671918 70672856 939.0 + 0 ENSG00000257302.1 processed_pseudogene FAHD2P1 1 OTTHUMG00000169503.1 pseudo_consens +18716 chr12 ENSEMBL gene 70906917 70907018 102.0 + 0 ENSG00000207387.1 misc_RNA RF00019 3 +18717 chr12 HAVANA gene 70638073 70920843 5142.0 - 0 ENSG00000153233.12 protein_coding PTPRR 1 OTTHUMG00000169502.2 +18718 chr12 HAVANA gene 71007773 71032083 541.0 - 0 ENSG00000257265.1 lincRNA AC123905.1 2 OTTHUMG00000169539.1 +18719 chr12 HAVANA gene 71034122 71104526 544.0 - 0 ENSG00000257454.1 lincRNA AC025575.1 2 OTTHUMG00000169540.1 overlapping_locus +18720 chr12 HAVANA gene 71047402 71118247 565.0 - 0 ENSG00000258053.1 lincRNA AC025575.2 2 OTTHUMG00000169541.1 overlapping_locus +18721 chr12 HAVANA gene 71125085 71441898 2519.0 - 0 ENSG00000127324.8 protein_coding TSPAN8 2 OTTHUMG00000169542.2 +18722 chr12 HAVANA gene 71448405 71448850 446.0 + 0 ENSG00000277223.1 sense_intronic AC090116.1 2 OTTHUMG00000187279.1 overlapping_locus +18723 chr12 HAVANA gene 71582293 71583852 527.0 - 0 ENSG00000257761.1 antisense AC078860.1 1 OTTHUMG00000169544.1 +18724 chr12 HAVANA gene 71439770 71586310 5251.0 + 0 ENSG00000139292.12 protein_coding LGR5 2 OTTHUMG00000169543.1 overlapping_locus +18725 chr12 ENSEMBL gene 71639355 71639483 129.0 + 0 ENSG00000212461.1 snoRNA RF00560 3 +18726 chr12 HAVANA gene 71609472 71667725 9670.0 - 0 ENSG00000133858.15 protein_coding ZFC3H1 1 OTTHUMG00000169545.1 +18727 chr12 HAVANA gene 71663009 71680639 6527.0 + 0 ENSG00000173451.6 protein_coding THAP2 1 OTTHUMG00000169556.2 overlapping_locus +18728 chr12 HAVANA gene 71674204 71698968 771.0 + 0 ENSG00000258064.1 protein_coding AC073612.1 2 OTTHUMG00000169557.2 overlapping_locus +18729 chr12 HAVANA gene 71686087 71705046 6488.0 + 0 ENSG00000139291.13 protein_coding TMEM19 2 OTTHUMG00000169558.3 overlapping_locus +18730 chr12 HAVANA gene 71709171 71710374 577.0 - 0 ENSG00000257515.1 lincRNA AC011601.1 2 OTTHUMG00000169571.1 +18731 chr12 HAVANA gene 71793855 71799627 1431.0 - 0 ENSG00000257410.1 lincRNA AC089984.1 2 OTTHUMG00000169573.1 +18732 chr12 HAVANA gene 71754874 71800285 16036.0 + 0 ENSG00000080371.5 protein_coding RAB21 2 OTTHUMG00000169572.2 +18733 chr12 HAVANA gene 71835034 71835396 363.0 - 0 ENSG00000257991.1 processed_pseudogene AC089984.3 1 OTTHUMG00000169574.1 pseudo_consens +18734 chr12 HAVANA gene 71849228 71850428 1201.0 - 0 ENSG00000257802.1 processed_pseudogene AC089984.2 1 OTTHUMG00000169641.1 pseudo_consens +18735 chr12 HAVANA gene 71839707 71927248 8227.0 + 0 ENSG00000121749.15 protein_coding TBC1D15 2 OTTHUMG00000158553.5 +18736 chr12 HAVANA gene 72046149 72057377 819.0 - 0 ENSG00000258115.1 antisense AC090109.1 2 OTTHUMG00000169678.1 +18737 chr12 HAVANA gene 71938846 72186618 6929.0 + 0 ENSG00000139287.12 protein_coding TPH2 2 OTTHUMG00000169677.2 overlapping_locus +18738 chr12 HAVANA gene 72253508 72274907 8781.0 - 0 ENSG00000236333.3 processed_transcript TRHDE-AS1 1 OTTHUMG00000150370.3 +18739 chr12 HAVANA gene 72431722 72432075 354.0 - 0 ENSG00000257287.1 processed_pseudogene AC016256.1 1 OTTHUMG00000169679.1 pseudo_consens +18740 chr12 HAVANA gene 72610678 72611316 639.0 + 0 ENSG00000257723.1 processed_pseudogene CHCHD3P2 1 OTTHUMG00000169680.1 pseudo_consens,overlapping_locus +18741 chr12 HAVANA gene 72087266 72670757 11950.0 + 0 ENSG00000072657.8 protein_coding TRHDE 2 OTTHUMG00000169642.4 overlapping_locus +18742 chr12 HAVANA gene 72727923 72728844 381.0 - 0 ENSG00000258235.1 lincRNA AC133480.1 2 OTTHUMG00000169681.1 +18743 chr12 HAVANA gene 73115957 73143858 1091.0 - 0 ENSG00000258294.5 processed_transcript AC090503.2 2 OTTHUMG00000169671.1 +18744 chr12 HAVANA gene 73203815 73206835 729.0 - 0 ENSG00000257682.1 lincRNA AC090503.1 2 OTTHUMG00000169673.1 +18745 chr12 HAVANA gene 73159190 73208317 1256.0 + 0 ENSG00000258123.1 lincRNA LINC02444 2 OTTHUMG00000169672.1 +18746 chr12 HAVANA gene 73648666 73649039 374.0 + 0 ENSG00000243164.1 processed_pseudogene AC087879.1 1 OTTHUMG00000157618.1 pseudo_consens +18747 chr12 ENSEMBL gene 73679188 73679296 109.0 - 0 ENSG00000252415.1 snRNA RNU6-1012P 3 +18748 chr12 ENSEMBL gene 73764279 73764413 135.0 - 0 ENSG00000201809.1 snoRNA RF00096 3 +18749 chr12 HAVANA gene 73760689 73798727 459.0 + 0 ENSG00000257750.1 lincRNA LINC02445 2 OTTHUMG00000169687.1 +18750 chr12 HAVANA gene 73906940 73919337 342.0 + 0 ENSG00000257587.1 lincRNA AC136188.1 2 OTTHUMG00000169688.1 +18751 chr12 HAVANA gene 74039086 74049981 2381.0 + 0 ENSG00000258332.2 lincRNA LINC02394 2 OTTHUMG00000169689.2 +18752 chr12 HAVANA gene 74170445 74171830 1386.0 + 0 ENSG00000258320.1 processed_pseudogene AC090502.4 1 OTTHUMG00000169690.1 pseudo_consens +18753 chr12 HAVANA gene 74274952 74275231 280.0 + 0 ENSG00000257113.1 processed_pseudogene AC090502.2 2 OTTHUMG00000169691.1 +18754 chr12 HAVANA gene 74248637 74283669 529.0 - 0 ENSG00000257183.1 lincRNA AC090502.3 2 OTTHUMG00000169794.1 overlapping_locus +18755 chr12 HAVANA gene 74292324 74293096 773.0 + 0 ENSG00000257364.1 processed_pseudogene VENTXP3 1 OTTHUMG00000169694.1 pseudo_consens +18756 chr12 HAVANA gene 74133166 74402535 2342.0 - 0 ENSG00000251138.6 lincRNA AC090502.1 2 OTTHUMG00000169693.2 overlapping_locus +18757 chr12 HAVANA gene 74538145 74538633 375.0 - 0 ENSG00000257386.1 antisense AC025257.1 2 OTTHUMG00000169696.1 +18758 chr12 HAVANA gene 74537827 74545430 7604.0 + 0 ENSG00000253719.3 protein_coding ATXN7L3B 2 OTTHUMG00000163936.2 retrogene +18759 chr12 HAVANA gene 74656561 74656860 300.0 + 0 ENSG00000257323.1 processed_pseudogene AC123904.2 1 OTTHUMG00000169697.1 pseudo_consens +18760 chr12 HAVANA gene 74663774 74664141 368.0 - 0 ENSG00000188646.6 processed_pseudogene AC123904.1 1 OTTHUMG00000169698.1 pseudo_consens +18761 chr12 HAVANA gene 74728038 74728851 814.0 - 0 ENSG00000257998.1 processed_pseudogene AC123904.3 1 OTTHUMG00000169699.1 pseudo_consens +18762 chr12 HAVANA gene 75020969 75044793 3188.0 + 0 ENSG00000257434.1 antisense AC073525.1 1 OTTHUMG00000169704.1 +18763 chr12 HAVANA gene 75040077 75209868 6368.0 - 0 ENSG00000166006.13 protein_coding KCNC2 1 OTTHUMG00000169717.4 +18764 chr12 HAVANA gene 75257635 75258634 1000.0 - 0 ENSG00000258112.1 processed_pseudogene CCNG2P1 1 OTTHUMG00000169731.1 pseudo_consens +18765 chr12 HAVANA gene 75234740 75298508 2356.0 + 0 ENSG00000254451.2 antisense AC091534.1 2 OTTHUMG00000165409.2 +18766 chr12 HAVANA gene 75305452 75306357 906.0 + 0 ENSG00000257823.1 processed_pseudogene AC092552.1 1 OTTHUMG00000169754.1 pseudo_consens +18767 chr12 HAVANA gene 75333798 75334486 689.0 - 0 ENSG00000273987.1 sense_intronic AC121761.2 2 OTTHUMG00000187280.1 overlapping_locus +18768 chr12 HAVANA gene 75334639 75370560 1384.0 + 0 ENSG00000173401.9 protein_coding GLIPR1L1 2 OTTHUMG00000169755.2 +18769 chr12 HAVANA gene 75275979 75390928 6689.0 - 0 ENSG00000180881.19 protein_coding CAPS2 1 OTTHUMG00000152787.7 overlapping_locus +18770 chr12 HAVANA gene 75391070 75432688 3790.0 + 0 ENSG00000180481.10 protein_coding GLIPR1L2 2 OTTHUMG00000169756.1 +18771 chr12 HAVANA gene 75483454 75489820 1482.0 - 0 ENSG00000257497.2 antisense AC121761.1 2 OTTHUMG00000169758.2 +18772 chr12 HAVANA gene 75480680 75503853 6273.0 + 0 ENSG00000139278.9 protein_coding GLIPR1 1 OTTHUMG00000169757.2 +18773 chr12 HAVANA gene 75490861 75511636 10749.0 - 0 ENSG00000111615.13 protein_coding KRR1 2 OTTHUMG00000169759.3 +18774 chr12 HAVANA gene 75600047 75601551 1505.0 + 0 ENSG00000257777.1 processed_pseudogene AC022507.1 1 OTTHUMG00000169777.1 pseudo_consens +18775 chr12 HAVANA gene 75688794 75689096 303.0 - 0 ENSG00000258245.1 processed_pseudogene RPL10P13 2 OTTHUMG00000169778.1 overlapping_locus +18776 chr12 ENSEMBL gene 75689152 75689304 153.0 - 0 ENSG00000251893.2 snoRNA RF00156 3 +18777 chr12 HAVANA gene 75694010 75698816 742.0 - 0 ENSG00000258088.1 lincRNA AC078820.1 2 OTTHUMG00000169779.1 overlapping_locus +18778 chr12 HAVANA gene 75926213 75926467 255.0 + 0 ENSG00000258091.1 processed_pseudogene AC011611.6 1 OTTHUMG00000169780.1 pseudo_consens +18779 chr12 ENSEMBL gene 75957833 75958130 298.0 - 0 ENSG00000243420.3 misc_RNA RN7SL734P 3 +18780 chr12 HAVANA gene 75964799 75964995 197.0 + 0 ENSG00000198923.4 processed_pseudogene AC011611.1 1 OTTHUMG00000169782.1 pseudo_consens,overlapping_locus +18781 chr12 HAVANA gene 75964440 75967062 358.0 + 0 ENSG00000257329.1 lincRNA AC011611.2 1 OTTHUMG00000169781.1 overlapping_locus +18782 chr12 HAVANA gene 75563202 75984015 1385.0 - 0 ENSG00000258077.2 lincRNA AC078923.1 1 OTTHUMG00000169765.4 ncRNA_host,overlapping_locus +18783 chr12 HAVANA gene 76030494 76031378 569.0 + 0 ENSG00000257453.1 antisense AC011611.3 2 OTTHUMG00000169784.1 +18784 chr12 HAVANA gene 76032658 76033897 779.0 + 0 ENSG00000257839.1 antisense AC011611.4 1 OTTHUMG00000169785.1 +18785 chr12 HAVANA gene 76025447 76033932 8069.0 - 0 ENSG00000139289.13 protein_coding PHLDA1 2 OTTHUMG00000169783.2 +18786 chr12 HAVANA gene 76057538 76058115 578.0 + 0 ENSG00000257941.1 processed_pseudogene AC011611.5 1 OTTHUMG00000169787.1 pseudo_consens +18787 chr12 HAVANA gene 76036587 76085033 17355.0 - 0 ENSG00000187109.13 protein_coding NAP1L1 1 OTTHUMG00000169786.6 +18788 chr12 HAVANA gene 76115711 76116100 390.0 + 0 ENSG00000258304.1 processed_pseudogene AC233290.2 1 OTTHUMG00000169873.1 pseudo_consens +18789 chr12 HAVANA gene 76137425 76138610 1186.0 + 0 ENSG00000257872.1 processed_pseudogene AC233290.1 1 OTTHUMG00000169874.1 pseudo_consens +18790 chr12 ENSEMBL gene 76139567 76139671 105.0 + 0 ENSG00000252858.1 snRNA RNU6-1271P 3 +18791 chr12 HAVANA gene 76259839 76305131 1201.0 + 0 ENSG00000257219.5 lincRNA LINC02407 2 OTTHUMG00000169875.1 +18792 chr12 ENSEMBL gene 76315751 76316048 298.0 + 0 ENSG00000223273.1 misc_RNA RN7SKP172 3 +18793 chr12 HAVANA gene 76344474 76348442 3595.0 - 0 ENSG00000179941.7 protein_coding BBS10 2 OTTHUMG00000147352.3 +18794 chr12 HAVANA gene 76351797 76559809 9198.0 - 0 ENSG00000091039.16 protein_coding OSBPL8 2 OTTHUMG00000169876.2 +18795 chr12 HAVANA gene 76599671 76600470 800.0 + 0 ENSG00000213272.5 processed_pseudogene RPL7AP9 1 OTTHUMG00000157621.2 pseudo_consens,overlapping_locus +18796 chr12 HAVANA gene 76562294 76615567 386.0 + 0 ENSG00000257526.2 lincRNA AC107032.2 2 OTTHUMG00000169877.2 overlapping_locus +18797 chr12 HAVANA gene 76619386 76620043 658.0 + 0 ENSG00000271142.1 processed_pseudogene YWHAQP7 1 OTTHUMG00000184752.1 pseudo_consens +18798 chr12 HAVANA gene 76660405 76660884 480.0 + 0 ENSG00000243071.1 processed_pseudogene AC107032.1 1 OTTHUMG00000157622.1 pseudo_consens +18799 chr12 HAVANA gene 76721534 76722286 753.0 + 0 ENSG00000241045.1 processed_pseudogene RPL7P43 1 OTTHUMG00000157625.1 pseudo_consens +18800 chr12 HAVANA gene 76757191 76757914 724.0 + 0 ENSG00000258090.1 processed_pseudogene AC093014.1 1 OTTHUMG00000169916.1 pseudo_consens +18801 chr12 HAVANA gene 76763588 76853696 8800.0 + 0 ENSG00000186908.14 protein_coding ZDHHC17 2 OTTHUMG00000169917.2 +18802 chr12 HAVANA gene 76858715 76879060 5873.0 - 0 ENSG00000175183.9 protein_coding CSRP2 1 OTTHUMG00000169919.1 +18803 chr12 HAVANA gene 76878193 76880352 571.0 + 0 ENSG00000257910.1 antisense AC124784.1 2 OTTHUMG00000169920.1 +18804 chr12 HAVANA gene 76984079 76984669 591.0 - 0 ENSG00000257199.2 processed_pseudogene AC025161.1 1 OTTHUMG00000169968.2 pseudo_consens +18805 chr12 HAVANA gene 77021247 77065580 6303.0 - 0 ENSG00000165891.15 protein_coding E2F7 2 OTTHUMG00000169969.2 +18806 chr12 HAVANA gene 77219603 77228693 368.0 - 0 ENSG00000257677.1 lincRNA LINC02464 1 OTTHUMG00000169970.1 +18807 chr12 HAVANA gene 77379820 77390864 597.0 + 0 ENSG00000257835.1 lincRNA AC073591.1 1 OTTHUMG00000169975.1 overlapping_locus +18808 chr12 HAVANA gene 77775783 77783576 376.0 + 0 ENSG00000258066.1 lincRNA AC138331.1 2 OTTHUMG00000169976.1 +18809 chr12 HAVANA gene 78052181 78091737 475.0 - 0 ENSG00000258225.1 antisense AC073571.1 2 OTTHUMG00000170002.1 +18810 chr12 HAVANA gene 78130337 78131004 668.0 - 0 ENSG00000257220.1 processed_pseudogene FAM213AP1 1 OTTHUMG00000170003.1 pseudo_consens +18811 chr12 HAVANA gene 77324641 78213008 12135.0 + 0 ENSG00000067798.15 protein_coding NAV3 1 OTTHUMG00000170001.4 +18812 chr12 HAVANA gene 78326680 78359746 1264.0 - 0 ENSG00000258220.1 lincRNA LINC02424 2 OTTHUMG00000170004.1 +18813 chr12 HAVANA gene 78426826 78442952 1010.0 - 0 ENSG00000257879.1 lincRNA AC130415.1 2 OTTHUMG00000170010.1 +18814 chr12 HAVANA gene 78352519 78483019 1065.0 + 0 ENSG00000258084.5 lincRNA AC128707.1 2 OTTHUMG00000170009.1 +18815 chr12 HAVANA gene 78448995 78540675 718.0 - 0 ENSG00000257165.5 lincRNA AC079362.1 2 OTTHUMG00000170011.1 +18816 chr12 HAVANA gene 78793526 78794114 589.0 - 0 ENSG00000257564.1 processed_pseudogene AC068993.1 1 OTTHUMG00000170012.1 pseudo_consens +18817 chr12 HAVANA gene 78804348 78808499 395.0 + 0 ENSG00000257948.1 lincRNA AC068993.2 2 OTTHUMG00000170013.1 +18818 chr12 HAVANA gene 78960258 79045644 716.0 - 0 ENSG00000257191.1 antisense AC090709.1 2 OTTHUMG00000170062.1 +18819 chr12 ENSEMBL gene 79419257 79419321 65.0 + 0 ENSG00000221788.1 miRNA MIR1252 3 +18820 chr12 HAVANA gene 78863993 79452008 6494.0 + 0 ENSG00000067715.13 protein_coding SYT1 2 OTTHUMG00000134326.4 ncRNA_host +18821 chr12 HAVANA gene 79500119 79500687 243.0 - 0 ENSG00000257604.1 processed_pseudogene AC027288.2 2 OTTHUMG00000170064.1 overlapping_locus +18822 chr12 HAVANA gene 79341205 79503396 2253.0 - 0 ENSG00000257894.2 lincRNA AC027288.3 2 OTTHUMG00000170063.2 overlapping_locus +18823 chr12 HAVANA gene 79540203 79550535 1394.0 + 0 ENSG00000257474.5 lincRNA AC027288.1 2 OTTHUMG00000170065.1 +18824 chr12 HAVANA gene 79558782 79559166 385.0 + 0 ENSG00000257956.1 processed_pseudogene NOP56P3 1 OTTHUMG00000170066.1 pseudo_consens +18825 chr12 HAVANA gene 79574979 79691097 11668.0 - 0 ENSG00000177425.10 protein_coding PAWR 1 OTTHUMG00000170080.3 +18826 chr12 HAVANA gene 79690144 79778451 354.0 + 0 ENSG00000258048.1 lincRNA AC073569.2 2 OTTHUMG00000170081.1 +18827 chr12 HAVANA gene 79818784 79819465 682.0 - 0 ENSG00000277130.1 sense_intronic AC073569.3 2 OTTHUMG00000187281.1 overlapping_locus +18828 chr12 HAVANA gene 79823778 79825496 667.0 + 0 ENSG00000258044.1 antisense AC073569.1 2 OTTHUMG00000170082.1 +18829 chr12 ENSEMBL gene 79878305 79878419 115.0 - 0 ENSG00000201942.1 rRNA_pseudogene RNA5SP363 3 +18830 chr12 HAVANA gene 79773563 79935460 11815.0 - 0 ENSG00000058272.18 protein_coding PPP1R12A 1 OTTHUMG00000170100.6 overlapping_locus +18831 chr12 HAVANA gene 79934901 79942712 3234.0 + 0 ENSG00000257557.2 bidirectional_promoter_lncRNA PPP1R12A-AS1 2 OTTHUMG00000170083.2 +18832 chr12 HAVANA gene 79989014 79989218 205.0 - 0 ENSG00000271496.1 processed_pseudogene SNRPGP20 1 OTTHUMG00000184774.1 pseudo_consens +18833 chr12 HAVANA gene 80028893 80029631 739.0 + 0 ENSG00000239473.1 processed_pseudogene RPL7P38 1 OTTHUMG00000157627.1 pseudo_consens +18834 chr12 ENSEMBL gene 80068691 80068757 67.0 - 0 ENSG00000238842.1 snRNA RNU7-106P 3 +18835 chr12 HAVANA gene 80102899 80103333 435.0 - 0 ENSG00000230291.5 processed_pseudogene AC078817.1 1 OTTHUMG00000157628.1 pseudo_consens +18836 chr12 ENSEMBL gene 80343515 80343792 278.0 - 0 ENSG00000222880.1 misc_RNA RN7SKP261 3 +18837 chr12 HAVANA gene 80099537 80380879 12278.0 + 0 ENSG00000165899.11 protein_coding OTOGL 1 OTTHUMG00000150509.8 +18838 chr12 HAVANA gene 80561017 80561560 544.0 - 0 ENSG00000257786.1 processed_pseudogene AKIRIN1P1 1 OTTHUMG00000170163.1 pseudo_consens +18839 chr12 HAVANA gene 80583683 80593701 734.0 - 0 ENSG00000257429.1 antisense AC074031.1 1 OTTHUMG00000170164.1 +18840 chr12 HAVANA gene 80402178 80680271 12477.0 + 0 ENSG00000139304.13 protein_coding PTPRQ 1 OTTHUMG00000170171.8 +18841 chr12 HAVANA gene 80707498 80709474 1465.0 + 0 ENSG00000111046.3 protein_coding MYF6 2 OTTHUMG00000170165.1 +18842 chr12 HAVANA gene 80716912 80719673 1542.0 + 0 ENSG00000111049.3 protein_coding MYF5 2 OTTHUMG00000170166.1 +18843 chr12 HAVANA gene 80763154 80770717 1478.0 + 0 ENSG00000257741.5 lincRNA LINC01490 2 OTTHUMG00000170167.1 +18844 chr12 ENSEMBL gene 80832533 80832629 97.0 - 0 ENSG00000207763.1 miRNA MIR617 3 +18845 chr12 HAVANA gene 80860955 80861508 554.0 - 0 ENSG00000258215.1 processed_pseudogene AC078886.1 2 OTTHUMG00000170169.1 overlapping_locus +18846 chr12 ENSEMBL gene 80935736 80935833 98.0 - 0 ENSG00000208022.1 miRNA MIR618 3 +18847 chr12 HAVANA gene 80792520 80937925 6795.0 - 0 ENSG00000111052.7 protein_coding LIN7A 1 OTTHUMG00000170168.2 ncRNA_host,overlapping_locus +18848 chr12 HAVANA gene 81094375 81125845 882.0 - 0 ENSG00000258026.1 antisense AC078955.1 2 OTTHUMG00000170180.2 +18849 chr12 ENSEMBL gene 81158388 81158461 74.0 + 0 ENSG00000265227.1 miRNA MIR4699 3 +18850 chr12 HAVANA gene 80936414 81261205 14301.0 + 0 ENSG00000111058.7 protein_coding ACSS3 2 OTTHUMG00000170179.4 ncRNA_host +18851 chr12 HAVANA gene 81270675 81312422 2024.0 + 0 ENSG00000257467.5 lincRNA PPFIA2-AS1 2 OTTHUMG00000170246.1 +18852 chr12 HAVANA gene 81378042 81472954 2310.0 + 0 ENSG00000258162.2 antisense AC069228.1 2 OTTHUMG00000170247.3 +18853 chr12 HAVANA gene 81545326 81546450 1125.0 - 0 ENSG00000258375.2 processed_pseudogene AC079363.1 1 OTTHUMG00000170261.2 pseudo_consens,overlapping_locus +18854 chr12 HAVANA gene 81257975 81759553 8573.0 - 0 ENSG00000139220.16 protein_coding PPFIA2 2 OTTHUMG00000170181.5 overlapping_locus +18855 chr12 HAVANA gene 81868368 81869046 679.0 + 0 ENSG00000257609.1 processed_pseudogene AC091515.1 2 OTTHUMG00000170248.1 +18856 chr12 HAVANA gene 81953719 81993133 1372.0 + 0 ENSG00000257747.1 lincRNA LINC02426 2 OTTHUMG00000170249.1 +18857 chr12 HAVANA gene 81998632 81998962 331.0 + 0 ENSG00000258193.1 processed_pseudogene AC011602.1 2 OTTHUMG00000170250.1 +18858 chr12 HAVANA gene 82223681 82358805 3784.0 - 0 ENSG00000133773.11 protein_coding CCDC59 2 OTTHUMG00000170251.2 +18859 chr12 HAVANA gene 82468456 82468948 493.0 + 0 ENSG00000257875.1 processed_pseudogene AC089998.3 1 OTTHUMG00000169735.1 pseudo_consens,overlapping_locus +18860 chr12 HAVANA gene 82358497 82479236 3672.0 + 0 ENSG00000127720.7 protein_coding METTL25 1 OTTHUMG00000170252.2 overlapping_locus +18861 chr12 HAVANA gene 82481118 82497560 459.0 - 0 ENSG00000258170.1 lincRNA AC089998.4 2 OTTHUMG00000170253.1 +18862 chr12 HAVANA gene 82505211 82506188 277.0 - 0 ENSG00000257837.1 lincRNA AC089998.2 2 OTTHUMG00000170254.1 +18863 chr12 HAVANA gene 82512677 82515817 3141.0 + 0 ENSG00000257431.1 lincRNA AC089998.1 2 OTTHUMG00000170255.1 +18864 chr12 ENSEMBL gene 83021890 83021992 103.0 + 0 ENSG00000252220.1 snRNA RNU6-977P 3 +18865 chr12 HAVANA gene 82686880 83134870 8323.0 + 0 ENSG00000179104.8 protein_coding TMTC2 2 OTTHUMG00000169736.3 ncRNA_host +18866 chr12 HAVANA gene 83151331 83152190 860.0 + 0 ENSG00000213270.5 processed_pseudogene RPL6P25 1 OTTHUMG00000157640.2 pseudo_consens +18867 chr12 HAVANA gene 83171590 83172740 742.0 + 0 ENSG00000258338.1 lincRNA AC090680.1 2 OTTHUMG00000169737.1 +18868 chr12 HAVANA gene 83661009 83661719 569.0 - 0 ENSG00000257124.2 lincRNA AC093025.1 2 OTTHUMG00000169738.2 +18869 chr12 HAVANA gene 84147304 84154338 538.0 - 0 ENSG00000285191.1 lincRNA AC090679.2 2 OTTHUMG00000192564.1 +18870 chr12 ENSEMBL gene 84183324 84183448 125.0 - 0 ENSG00000221148.1 snoRNA RF00334 3 +18871 chr12 HAVANA gene 84154434 84294562 1065.0 + 0 ENSG00000257729.2 lincRNA AC090679.1 2 OTTHUMG00000169739.2 +18872 chr12 HAVANA gene 84448625 84449878 1254.0 - 0 ENSG00000258358.2 processed_pseudogene AC087888.1 1 OTTHUMG00000169740.2 pseudo_consens +18873 chr12 HAVANA gene 84671598 84672026 429.0 + 0 ENSG00000257296.1 processed_pseudogene AC093027.1 1 OTTHUMG00000169741.1 pseudo_consens +18874 chr12 HAVANA gene 84859488 84913615 8781.0 - 0 ENSG00000072041.16 protein_coding SLC6A15 1 OTTHUMG00000169742.7 +18875 chr12 HAVANA gene 84939524 84939668 145.0 - 0 ENSG00000258073.1 processed_pseudogene AC128657.1 2 OTTHUMG00000169743.1 +18876 chr12 HAVANA gene 85014311 85036277 4085.0 - 0 ENSG00000231738.10 protein_coding TSPAN19 1 OTTHUMG00000166181.5 +18877 chr12 HAVANA gene 85036314 85264457 8793.0 + 0 ENSG00000133640.19 protein_coding LRRIQ1 1 OTTHUMG00000166185.6 +18878 chr12 HAVANA gene 85280107 85301784 1445.0 + 0 ENSG00000180318.3 protein_coding ALX1 2 OTTHUMG00000169820.1 +18879 chr12 HAVANA gene 85318060 85342912 519.0 + 0 ENSG00000258815.1 lincRNA AC131532.1 2 OTTHUMG00000170606.1 +18880 chr12 HAVANA gene 85567878 85568239 362.0 + 0 ENSG00000257855.1 processed_pseudogene AC126471.1 1 OTTHUMG00000169829.3 pseudo_consens +18881 chr12 HAVANA gene 85781892 85782444 553.0 - 0 ENSG00000258206.1 processed_pseudogene AC137768.1 1 OTTHUMG00000169830.1 pseudo_consens +18882 chr12 HAVANA gene 85800697 85836570 5682.0 - 0 ENSG00000198774.4 protein_coding RASSF9 2 OTTHUMG00000169831.2 +18883 chr12 HAVANA gene 85874295 85882992 1555.0 + 0 ENSG00000133636.10 protein_coding NTS 2 OTTHUMG00000169832.2 +18884 chr12 HAVANA gene 85958686 85960946 1258.0 + 0 ENSG00000258178.1 lincRNA AC016993.1 2 OTTHUMG00000169845.1 +18885 chr12 HAVANA gene 86015697 86016441 745.0 + 0 ENSG00000257897.1 processed_pseudogene AC139697.1 1 OTTHUMG00000169847.1 pseudo_consens +18886 chr12 HAVANA gene 85955666 86838904 27763.0 - 0 ENSG00000182050.13 protein_coding MGAT4C 2 OTTHUMG00000169846.8 overlapping_locus +18887 chr12 HAVANA gene 86599578 86838998 450.0 - 0 ENSG00000258185.2 lincRNA AC010196.1 2 OTTHUMG00000169850.1 overlapping_locus +18888 chr12 HAVANA gene 87041916 87042423 508.0 + 0 ENSG00000280049.1 TEC AC079597.1 2 OTTHUMG00000169851.1 +18889 chr12 HAVANA gene 87169985 87170429 445.0 - 0 ENSG00000242850.3 processed_pseudogene RPL23AP68 1 OTTHUMG00000157656.3 pseudo_consens +18890 chr12 HAVANA gene 87746567 87746683 117.0 + 0 ENSG00000258205.1 processed_pseudogene AC079598.4 2 OTTHUMG00000169862.1 +18891 chr12 HAVANA gene 87750142 87750313 172.0 + 0 ENSG00000257648.1 processed_pseudogene CYCSP30 1 OTTHUMG00000169863.1 pseudo_consens +18892 chr12 HAVANA gene 87753414 87753447 34.0 - 0 ENSG00000258173.1 processed_pseudogene AC079598.2 2 OTTHUMG00000169864.1 +18893 chr12 HAVANA gene 87782163 87784568 2406.0 - 0 ENSG00000258128.2 transcribed_processed_pseudogene MKRN9P 2 OTTHUMG00000169865.2 +18894 chr12 HAVANA gene 87795733 87802028 777.0 + 0 ENSG00000257912.1 lincRNA LINC02258 2 OTTHUMG00000169866.1 +18895 chr12 HAVANA gene 87816486 87817831 554.0 + 0 ENSG00000257940.1 lincRNA AC079598.1 2 OTTHUMG00000169867.1 +18896 chr12 HAVANA gene 87820654 87820918 265.0 - 0 ENSG00000258179.1 processed_pseudogene AC079598.3 2 OTTHUMG00000169868.1 +18897 chr12 HAVANA gene 87944885 87950819 795.0 + 0 ENSG00000240721.2 processed_pseudogene RPS4XP15 1 OTTHUMG00000157662.3 pseudo_consens +18898 chr12 HAVANA gene 87980035 88034037 5609.0 - 0 ENSG00000165805.9 protein_coding C12orf50 2 OTTHUMG00000169869.3 +18899 chr12 HAVANA gene 88033846 88050160 6454.0 + 0 ENSG00000133641.17 protein_coding C12orf29 2 OTTHUMG00000169870.3 +18900 chr12 ENSEMBL gene 88051701 88051778 78.0 + 0 ENSG00000252747.1 rRNA_pseudogene RNA5SP364 3 +18901 chr12 HAVANA gene 88057876 88058578 703.0 - 0 ENSG00000257752.1 processed_pseudogene AC091516.1 1 OTTHUMG00000169872.1 pseudo_consens,overlapping_locus +18902 chr12 HAVANA gene 88049014 88142216 10388.0 - 0 ENSG00000198707.14 protein_coding CEP290 2 OTTHUMG00000169871.4 overlapping_locus +18903 chr12 HAVANA gene 88142296 88199887 7327.0 + 0 ENSG00000139324.11 protein_coding TMTC3 1 OTTHUMG00000169887.3 +18904 chr12 ENSEMBL gene 88430442 88430550 109.0 + 0 ENSG00000199245.1 misc_RNA RF00019 3 +18905 chr12 HAVANA gene 88492793 88580851 6030.0 - 0 ENSG00000049130.15 protein_coding KITLG 2 OTTHUMG00000169888.6 +18906 chr12 ENSEMBL gene 88581639 88581796 158.0 + 0 ENSG00000252850.1 snRNA RNU1-117P 3 +18907 chr12 HAVANA gene 88580531 88598218 493.0 + 0 ENSG00000281333.1 antisense AC024941.2 2 OTTHUMG00000189589.1 ncRNA_host +18908 chr12 HAVANA gene 88601862 88602195 334.0 + 0 ENSG00000278011.1 lincRNA AC024941.1 2 OTTHUMG00000187165.1 +18909 chr12 HAVANA gene 89010681 89019679 2941.0 - 0 ENSG00000246363.2 lincRNA LINC02458 2 OTTHUMG00000169908.2 +18910 chr12 HAVANA gene 89027757 89028522 219.0 + 0 ENSG00000257629.1 processed_pseudogene AC006199.1 1 OTTHUMG00000169909.1 pseudo_consens +18911 chr12 ENSEMBL gene 89282223 89282285 63.0 - 0 ENSG00000238302.1 snRNA RNU7-120P 3 +18912 chr12 HAVANA gene 89048187 89309553 599.0 - 0 ENSG00000257156.1 lincRNA AC024909.1 2 OTTHUMG00000169910.2 ncRNA_host +18913 chr12 HAVANA gene 89319364 89319649 286.0 + 0 ENSG00000257820.1 processed_pseudogene MRPS6P4 1 OTTHUMG00000169911.1 pseudo_consens +18914 chr12 HAVANA gene 89351015 89353271 2257.0 + 0 ENSG00000274021.1 antisense AC024909.2 2 OTTHUMG00000169953.2 +18915 chr12 HAVANA gene 89347232 89353271 4632.0 - 0 ENSG00000139318.7 protein_coding DUSP6 2 OTTHUMG00000169912.4 +18916 chr12 HAVANA gene 89367807 89369301 1495.0 + 0 ENSG00000271327.1 lincRNA AC010201.2 2 OTTHUMG00000169943.2 +18917 chr12 HAVANA gene 89371820 89372359 540.0 + 0 ENSG00000271259.1 lincRNA AC010201.1 2 OTTHUMG00000184635.1 +18918 chr12 HAVANA gene 89500093 89502670 2578.0 + 0 ENSG00000226982.4 processed_pseudogene CENPCP1 1 OTTHUMG00000165431.2 pseudo_consens +18919 chr12 HAVANA gene 89519408 89524806 5399.0 - 0 ENSG00000257594.3 protein_coding GALNT4 2 OTTHUMG00000166292.3 overlapping_locus,retrogene +18920 chr12 HAVANA gene 89419718 89526024 8746.0 - 0 ENSG00000139323.13 protein_coding POC1B 2 OTTHUMG00000169944.1 overlapping_locus +18921 chr12 HAVANA gene 89519408 89526262 5500.0 - 0 ENSG00000259075.6 protein_coding POC1B-GALNT4 2 OTTHUMG00000171333.2 overlapping_locus +18922 chr12 HAVANA gene 89544203 89544488 286.0 - 0 ENSG00000279939.1 TEC AC025034.2 2 OTTHUMG00000172892.1 +18923 chr12 HAVANA gene 89525654 89548005 8041.0 + 0 ENSG00000270344.2 antisense POC1B-AS1 2 OTTHUMG00000184636.2 +18924 chr12 HAVANA gene 89561129 89594878 1711.0 + 0 ENSG00000258302.2 antisense AC025034.1 2 OTTHUMG00000169945.2 +18925 chr12 HAVANA gene 89588049 89709300 9493.0 - 0 ENSG00000070961.15 protein_coding ATP2B1 2 OTTHUMG00000169946.4 +18926 chr12 HAVANA gene 89708959 89712590 3632.0 + 0 ENSG00000271614.1 lincRNA ATP2B1-AS1 2 OTTHUMG00000169947.1 +18927 chr12 ENSEMBL gene 89726936 89727042 107.0 + 0 ENSG00000252207.1 rRNA_pseudogene RNA5SP365 3 +18928 chr12 HAVANA gene 89752913 89753831 919.0 + 0 ENSG00000257480.1 processed_pseudogene MRPL2P1 1 OTTHUMG00000169948.1 pseudo_consens +18929 chr12 ENSEMBL gene 89754059 89754152 94.0 + 0 ENSG00000252823.1 snRNA RNU6-148P 3 +18930 chr12 HAVANA gene 89919437 89919776 340.0 - 0 ENSG00000258290.1 processed_pseudogene BRWD1P2 1 OTTHUMG00000169951.1 pseudo_consens +18931 chr12 HAVANA gene 89947693 89949726 400.0 + 0 ENSG00000257725.1 lincRNA LINC02399 2 OTTHUMG00000169952.1 overlapping_locus +18932 chr12 HAVANA gene 89882665 89989289 682.0 + 0 ENSG00000258216.5 lincRNA AC084200.1 2 OTTHUMG00000169950.2 overlapping_locus +18933 chr12 HAVANA gene 90107739 90112779 926.0 + 0 ENSG00000257194.2 lincRNA AC126178.1 2 OTTHUMG00000170042.3 +18934 chr12 HAVANA gene 90280894 90300340 1122.0 + 0 ENSG00000258183.5 lincRNA LINC02392 2 OTTHUMG00000170044.1 +18935 chr12 HAVANA gene 90617759 90622822 310.0 - 0 ENSG00000257995.1 lincRNA AC084365.1 2 OTTHUMG00000169997.1 +18936 chr12 HAVANA gene 90809276 90810680 901.0 + 0 ENSG00000257787.1 lincRNA AC112481.1 1 OTTHUMG00000170069.2 +18937 chr12 HAVANA gene 90918023 90948669 1406.0 + 0 ENSG00000196243.5 lincRNA LINC00615 2 OTTHUMG00000170071.2 +18938 chr12 HAVANA gene 90905622 90955176 3244.0 - 0 ENSG00000197651.4 protein_coding CCER1 2 OTTHUMG00000170070.2 +18939 chr12 HAVANA gene 90963679 91005026 1805.0 - 0 ENSG00000083782.7 protein_coding EPYC 2 OTTHUMG00000170072.2 +18940 chr12 HAVANA gene 91050491 91057983 2162.0 - 0 ENSG00000139330.5 protein_coding KERA 2 OTTHUMG00000170073.2 +18941 chr12 HAVANA gene 91102629 91111831 3008.0 - 0 ENSG00000139329.4 protein_coding LUM 2 OTTHUMG00000170074.2 +18942 chr12 HAVANA gene 91140484 91183123 12847.0 - 0 ENSG00000011465.16 protein_coding DCN 1 OTTHUMG00000169998.6 +18943 chr12 HAVANA gene 91193709 91193942 234.0 + 0 ENSG00000258148.2 processed_pseudogene AC007115.1 1 OTTHUMG00000170075.2 pseudo_consens +18944 chr12 HAVANA gene 91362196 91368606 894.0 + 0 ENSG00000258100.1 lincRNA AC025035.1 2 OTTHUMG00000170076.2 +18945 chr12 ENSEMBL gene 91632912 91633023 112.0 - 0 ENSG00000274647.1 misc_RNA RF02110 3 +18946 chr12 HAVANA gene 91634887 91635644 758.0 + 0 ENSG00000277738.1 lincRNA AC126175.1 2 OTTHUMG00000187288.1 +18947 chr12 HAVANA gene 91680131 91680873 247.0 + 0 ENSG00000258125.1 lincRNA AC025254.1 2 OTTHUMG00000170068.2 +18948 chr12 HAVANA gene 91871122 91871230 109.0 - 0 ENSG00000258224.1 processed_pseudogene AC090049.2 1 OTTHUMG00000170088.1 pseudo_consens +18949 chr12 HAVANA gene 91877391 91880655 1188.0 + 0 ENSG00000257893.2 lincRNA LINC02404 2 OTTHUMG00000170089.2 +18950 chr12 HAVANA gene 91901458 91906187 1011.0 + 0 ENSG00000257863.1 lincRNA AC090049.1 2 OTTHUMG00000170090.1 +18951 chr12 HAVANA gene 91984976 92142914 3642.0 - 0 ENSG00000257242.7 processed_transcript LINC01619 1 OTTHUMG00000170091.4 overlapping_locus +18952 chr12 HAVANA gene 92140278 92145897 4854.0 - 0 ENSG00000133639.4 protein_coding BTG1 2 OTTHUMG00000170092.4 overlapping_locus +18953 chr12 HAVANA gene 92168400 92168877 478.0 + 0 ENSG00000239201.1 processed_pseudogene RPL21P106 1 OTTHUMG00000157668.1 pseudo_consens,overlapping_locus +18954 chr12 ENSEMBL gene 92170353 92170453 101.0 - 0 ENSG00000199895.1 misc_RNA RF00019 3 +18955 chr12 HAVANA gene 92145573 92189660 7589.0 + 0 ENSG00000245904.3 antisense AC025164.1 2 OTTHUMG00000170094.2 overlapping_locus +18956 chr12 HAVANA gene 92247756 92363832 800.0 - 0 ENSG00000277851.1 lincRNA LINC02391 2 OTTHUMG00000187289.1 +18957 chr12 HAVANA gene 92420094 92428148 686.0 - 0 ENSG00000205057.5 protein_coding CLLU1OS 2 OTTHUMG00000161990.1 +18958 chr12 HAVANA gene 92421531 92431002 6810.0 + 0 ENSG00000257127.6 processed_transcript CLLU1 2 OTTHUMG00000170103.2 overlapping_locus +18959 chr12 HAVANA gene 92421531 92483680 1968.0 + 0 ENSG00000266923.1 antisense AC063949.2 2 OTTHUMG00000159784.3 overlapping_locus +18960 chr12 HAVANA gene 92466451 92492091 10626.0 + 0 ENSG00000205056.8 lincRNA LINC02397 2 OTTHUMG00000181842.2 overlapping_locus +18961 chr12 HAVANA gene 92530460 92531324 865.0 + 0 ENSG00000258262.1 processed_pseudogene AC063949.1 1 OTTHUMG00000170104.3 pseudo_consens +18962 chr12 HAVANA gene 92702843 92772455 6487.0 + 0 ENSG00000187510.9 protein_coding PLEKHG7 1 OTTHUMG00000170106.4 +18963 chr12 HAVANA gene 92858079 92859273 1195.0 + 0 ENSG00000258012.1 processed_pseudogene AC026111.1 1 OTTHUMG00000170107.1 pseudo_consens +18964 chr12 HAVANA gene 92883773 92884700 928.0 + 0 ENSG00000257195.1 processed_pseudogene HNRNPA1P50 1 OTTHUMG00000170108.1 pseudo_consens +18965 chr12 HAVANA gene 92770637 92929331 10150.0 - 0 ENSG00000102189.16 protein_coding EEA1 2 OTTHUMG00000170110.2 +18966 chr12 ENSEMBL gene 92952639 92952745 107.0 + 0 ENSG00000202534.1 snRNA RNU6-1329P 3 +18967 chr12 HAVANA gene 92999218 93019820 1251.0 + 0 ENSG00000257345.2 lincRNA LINC02413 2 OTTHUMG00000170111.2 +18968 chr12 ENSEMBL gene 93021606 93021712 107.0 + 0 ENSG00000207365.1 misc_RNA RF00019 3 +18969 chr12 HAVANA gene 93035261 93035744 484.0 + 0 ENSG00000270506.1 processed_pseudogene AC021646.1 1 OTTHUMG00000184751.1 pseudo_consens +18970 chr12 HAVANA gene 93083598 93083675 78.0 - 0 ENSG00000256393.1 processed_pseudogene RPL41P5 2 OTTHUMG00000186889.1 overlapping_locus +18971 chr12 HAVANA gene 93090522 93107600 791.0 + 0 ENSG00000257746.1 lincRNA AC138123.2 2 OTTHUMG00000170113.1 +18972 chr12 HAVANA gene 93124063 93124543 481.0 - 0 ENSG00000257210.1 processed_pseudogene NACAP8 1 OTTHUMG00000170114.1 pseudo_consens,overlapping_locus +18973 chr12 HAVANA gene 93174366 93181832 1269.0 + 0 ENSG00000258171.1 lincRNA LINC02412 1 OTTHUMG00000170115.1 +18974 chr12 HAVANA gene 93003415 93215679 1914.0 - 0 ENSG00000257322.5 antisense AC138123.1 2 OTTHUMG00000170112.1 overlapping_locus +18975 chr12 ENSEMBL gene 93266017 93266096 80.0 + 0 ENSG00000201502.1 snoRNA RF00284 3 +18976 chr12 HAVANA gene 93314809 93315941 1133.0 + 0 ENSG00000257512.1 transcribed_processed_pseudogene AC124947.2 2 OTTHUMG00000170153.1 +18977 chr12 HAVANA gene 93317135 93377736 865.0 - 0 ENSG00000257252.5 antisense AC124947.1 2 OTTHUMG00000170154.1 +18978 chr12 HAVANA gene 93377883 93408146 10078.0 + 0 ENSG00000173598.13 protein_coding NUDT4 2 OTTHUMG00000170155.3 +18979 chr12 HAVANA gene 93405673 93442262 6269.0 - 0 ENSG00000177889.9 protein_coding UBE2N 1 OTTHUMG00000170156.4 +18980 chr12 ENSEMBL gene 93460725 93460826 102.0 - 0 ENSG00000200011.1 misc_RNA RF00019 3 +18981 chr12 ENSEMBL gene 93509487 93509768 282.0 + 0 ENSG00000243015.2 misc_RNA RN7SL737P 3 +18982 chr12 HAVANA gene 93467488 93516213 16393.0 + 0 ENSG00000198015.12 protein_coding MRPL42 1 OTTHUMG00000170157.3 ncRNA_host +18983 chr12 HAVANA gene 93529560 93529989 430.0 - 0 ENSG00000258271.1 processed_pseudogene AC025260.1 1 OTTHUMG00000170158.1 pseudo_consens +18984 chr12 HAVANA gene 93542463 93571768 3816.0 - 0 ENSG00000246985.7 processed_transcript SOCS2-AS1 2 OTTHUMG00000170159.1 +18985 chr12 HAVANA gene 93569814 93583487 6776.0 + 0 ENSG00000120833.13 protein_coding SOCS2 1 OTTHUMG00000170160.5 +18986 chr12 HAVANA gene 93640822 93641586 765.0 - 0 ENSG00000186076.5 processed_pseudogene AC012085.1 2 OTTHUMG00000170321.2 +18987 chr12 HAVANA gene 93707791 93737823 1949.0 - 0 ENSG00000258274.1 antisense AC012085.2 2 OTTHUMG00000170323.1 +18988 chr12 ENSEMBL gene 93831076 93831372 297.0 + 0 ENSG00000264978.2 misc_RNA RN7SL630P 3 +18989 chr12 HAVANA gene 93836167 93838038 779.0 + 0 ENSG00000258303.1 sense_intronic AC012464.2 2 OTTHUMG00000170325.1 overlapping_locus +18990 chr12 HAVANA gene 93677375 93894840 4276.0 + 0 ENSG00000169372.12 protein_coding CRADD 1 OTTHUMG00000170322.2 ncRNA_host,overlapping_locus +18991 chr12 HAVANA gene 93894965 93943603 540.0 - 0 ENSG00000257283.1 antisense AC012464.1 2 OTTHUMG00000170326.1 +18992 chr12 HAVANA gene 93945041 93947813 2773.0 + 0 ENSG00000271382.1 lincRNA AC012464.3 2 OTTHUMG00000170327.2 +18993 chr12 ENSEMBL gene 94008739 94009047 309.0 - 0 ENSG00000223126.1 misc_RNA RN7SKP263 3 +18994 chr12 HAVANA gene 94140077 94141337 1261.0 + 0 ENSG00000257360.1 processed_pseudogene AC123567.1 1 OTTHUMG00000170234.1 pseudo_consens +18995 chr12 HAVANA gene 94168006 94186044 473.0 - 0 ENSG00000258035.1 antisense AC123567.2 2 OTTHUMG00000170237.1 +18996 chr12 HAVANA gene 94272150 94277195 493.0 - 0 ENSG00000258172.1 antisense AC073655.1 2 OTTHUMG00000170238.1 +18997 chr12 HAVANA gene 94277758 94282844 1116.0 - 0 ENSG00000258365.1 antisense AC073655.2 1 OTTHUMG00000170239.1 +18998 chr12 HAVANA gene 94148723 94307675 9887.0 + 0 ENSG00000136040.8 protein_coding PLXNC1 1 OTTHUMG00000170235.7 +18999 chr12 ENSEMBL gene 94361220 94361526 307.0 + 0 ENSG00000244391.3 misc_RNA RN7SL330P 3 +19000 chr12 HAVANA gene 94423744 94424969 1226.0 - 0 ENSG00000213250.5 processed_pseudogene RBMS2P1 1 OTTHUMG00000165432.2 pseudo_consens,overlapping_locus +19001 chr12 HAVANA gene 94306449 94459988 6925.0 - 0 ENSG00000173588.14 protein_coding CEP83 1 OTTHUMG00000170242.6 overlapping_locus +19002 chr12 HAVANA gene 94460003 94462484 2482.0 + 0 ENSG00000278916.1 lincRNA CEP83-DT 2 OTTHUMG00000170256.1 +19003 chr12 HAVANA gene 94491546 94496442 420.0 - 0 ENSG00000257400.1 lincRNA AC023161.1 2 OTTHUMG00000170227.1 +19004 chr12 ENSEMBL gene 94515476 94515760 285.0 + 0 ENSG00000244091.1 misc_RNA RN7SL483P 3 +19005 chr12 HAVANA gene 94521090 94521869 780.0 - 0 ENSG00000258357.1 processed_pseudogene AC023161.2 1 OTTHUMG00000170228.1 pseudo_consens +19006 chr12 HAVANA gene 94548241 94549536 1296.0 + 0 ENSG00000236349.1 processed_pseudogene SUCLG2P2 1 OTTHUMG00000170229.1 pseudo_consens +19007 chr12 ENSEMBL gene 94561789 94561859 71.0 + 0 ENSG00000266099.1 miRNA MIR5700 3 +19008 chr12 ENSEMBL gene 94571231 94571352 122.0 - 0 ENSG00000283818.1 miRNA MIR7844 3 +19009 chr12 HAVANA gene 94590821 94591093 273.0 + 0 ENSG00000257847.1 processed_pseudogene LSM3P2 1 OTTHUMG00000170226.1 pseudo_consens +19010 chr12 HAVANA gene 94567124 94650562 6515.0 - 0 ENSG00000057704.12 protein_coding TMCC3 1 OTTHUMG00000170225.3 ncRNA_host +19011 chr12 ENSEMBL gene 94834398 94834513 116.0 + 0 ENSG00000283998.1 miRNA MIR492 3 +19012 chr12 HAVANA gene 94834147 94835158 1012.0 + 0 ENSG00000216306.3 transcribed_processed_pseudogene KRT19P2 1 OTTHUMG00000170700.1 pseudo_consens +19013 chr12 HAVANA gene 94897055 95003770 1815.0 - 0 ENSG00000184752.12 protein_coding NDUFA12 1 OTTHUMG00000170098.4 +19014 chr12 HAVANA gene 95020229 95073703 6529.0 - 0 ENSG00000120798.16 protein_coding NR2C1 1 OTTHUMG00000170131.3 +19015 chr12 HAVANA gene 95100531 95101045 515.0 + 0 ENSG00000257121.1 processed_pseudogene AC126615.2 1 OTTHUMG00000170134.1 pseudo_consens +19016 chr12 HAVANA gene 95125760 95126389 630.0 + 0 ENSG00000237774.3 processed_pseudogene AC126615.1 1 OTTHUMG00000157672.1 pseudo_consens +19017 chr12 HAVANA gene 95076749 95217482 10044.0 - 0 ENSG00000180263.13 protein_coding FGD6 2 OTTHUMG00000170133.2 +19018 chr12 ENSEMBL gene 95275770 95275872 103.0 + 0 ENSG00000202470.1 misc_RNA RF00019 3 +19019 chr12 HAVANA gene 95286318 95286838 521.0 - 0 ENSG00000257666.1 processed_pseudogene CBX3P5 1 OTTHUMG00000170215.1 pseudo_consens +19020 chr12 ENSEMBL gene 95290692 95290799 108.0 + 0 ENSG00000212535.1 snRNA RNU6-808P 3 +19021 chr12 HAVANA gene 95217746 95302790 8757.0 + 0 ENSG00000028203.17 protein_coding VEZT 2 OTTHUMG00000170182.3 ncRNA_host +19022 chr12 ENSEMBL gene 95308420 95308513 94.0 + 0 ENSG00000199172.3 miRNA MIR331 3 +19023 chr12 ENSEMBL gene 95309923 95309984 62.0 + 0 ENSG00000265917.1 miRNA MIR3685 3 +19024 chr12 HAVANA gene 95387890 95388558 369.0 - 0 ENSG00000258313.1 lincRNA AC084879.2 2 OTTHUMG00000170258.1 +19025 chr12 ENSEMBL gene 95438737 95438843 107.0 - 0 ENSG00000222544.1 snRNA RNU6-735P 3 +19026 chr12 HAVANA gene 95311312 95442482 3173.0 - 0 ENSG00000257943.2 transcribed_unitary_pseudogene AC084879.1 2 OTTHUMG00000170260.2 +19027 chr12 HAVANA gene 95467397 95467861 465.0 - 0 ENSG00000241556.1 processed_pseudogene AC018475.1 1 OTTHUMG00000157673.1 pseudo_consens +19028 chr12 HAVANA gene 95473520 95515839 4491.0 + 0 ENSG00000111142.13 protein_coding METAP2 1 OTTHUMG00000170280.2 +19029 chr12 HAVANA gene 95516560 95551490 5386.0 - 0 ENSG00000136014.11 protein_coding USP44 1 OTTHUMG00000170281.2 +19030 chr12 ENSEMBL gene 95617689 95617786 98.0 + 0 ENSG00000212448.1 misc_RNA RF00019 3 +19031 chr12 HAVANA gene 95551582 95673999 2367.0 + 0 ENSG00000257150.3 transcribed_processed_pseudogene PGAM1P5 1 OTTHUMG00000170282.2 pseudo_consens +19032 chr12 HAVANA gene 95657807 95791152 4166.0 - 0 ENSG00000074527.11 protein_coding NTN4 1 OTTHUMG00000170290.2 +19033 chr12 ENSEMBL gene 95792529 95792635 107.0 - 0 ENSG00000199506.1 snRNA RNU6-247P 3 +19034 chr12 HAVANA gene 95803097 95823307 393.0 + 0 ENSG00000258292.1 lincRNA LINC02410 1 OTTHUMG00000170350.1 +19035 chr12 HAVANA gene 95795345 95858839 924.0 - 0 ENSG00000258343.1 antisense AC090001.1 2 OTTHUMG00000170349.1 +19036 chr12 HAVANA gene 95885169 95885797 629.0 + 0 ENSG00000285030.1 processed_pseudogene AC090001.2 2 OTTHUMG00000192602.1 +19037 chr12 HAVANA gene 95858928 95903828 3043.0 + 0 ENSG00000139343.10 protein_coding SNRPF 2 OTTHUMG00000170351.1 +19038 chr12 HAVANA gene 95867048 95942974 5296.0 - 0 ENSG00000165972.12 protein_coding CCDC38 2 OTTHUMG00000170352.2 +19039 chr12 HAVANA gene 95943293 95968716 2686.0 + 0 ENSG00000139344.7 protein_coding AMDHD1 2 OTTHUMG00000170353.3 +19040 chr12 HAVANA gene 95972662 95996365 5146.0 - 0 ENSG00000084110.10 protein_coding HAL 1 OTTHUMG00000170354.2 +19041 chr12 HAVANA gene 95996521 96011489 862.0 + 0 ENSG00000257878.1 antisense AC007298.2 2 OTTHUMG00000170361.1 +19042 chr12 HAVANA gene 96025323 96027971 656.0 + 0 ENSG00000257715.1 antisense AC007298.1 2 OTTHUMG00000170356.1 +19043 chr12 HAVANA gene 96000828 96043520 7350.0 - 0 ENSG00000111144.9 protein_coding LTA4H 2 OTTHUMG00000170355.1 +19044 chr12 HAVANA gene 96060024 96060375 352.0 - 0 ENSG00000258251.1 processed_pseudogene YPEL5P3 1 OTTHUMG00000170362.1 pseudo_consens +19045 chr12 ENSEMBL gene 96101951 96102249 299.0 - 0 ENSG00000277062.1 misc_RNA RN7SL88P 3 +19046 chr12 HAVANA gene 96160692 96172126 2982.0 - 0 ENSG00000283422.1 lincRNA LINC02452 2 OTTHUMG00000191864.1 +19047 chr12 HAVANA gene 96222797 96223973 525.0 - 0 ENSG00000258177.1 antisense AC008149.1 2 OTTHUMG00000170365.1 +19048 chr12 HAVANA gene 96194382 96269835 4648.0 + 0 ENSG00000111145.7 protein_coding ELK3 2 OTTHUMG00000170364.3 +19049 chr12 ENSEMBL gene 96303375 96303513 139.0 - 0 ENSG00000201435.1 snRNA RNU4-24P 3 +19050 chr12 HAVANA gene 96386818 96387194 377.0 - 0 ENSG00000257169.1 processed_pseudogene AC125612.1 1 OTTHUMG00000170376.1 pseudo_consens,overlapping_locus +19051 chr12 HAVANA gene 96278261 96400560 6547.0 - 0 ENSG00000059758.7 protein_coding CDK17 2 OTTHUMG00000170375.2 ncRNA_host,overlapping_locus +19052 chr12 ENSEMBL gene 96427200 96427486 287.0 - 0 ENSG00000252827.1 misc_RNA RN7SKP11 3 +19053 chr12 HAVANA gene 96422326 96485442 379.0 - 0 ENSG00000258272.1 lincRNA AC007513.1 2 OTTHUMG00000170377.1 ncRNA_host +19054 chr12 HAVANA gene 96489571 96875555 12914.0 + 0 ENSG00000188596.10 protein_coding CFAP54 1 OTTHUMG00000167566.9 +19055 chr12 HAVANA gene 96900697 96902698 1362.0 - 0 ENSG00000258846.1 processed_pseudogene EEF1A1P33 1 OTTHUMG00000170603.1 pseudo_consens +19056 chr12 HAVANA gene 96907223 96953777 4463.0 + 0 ENSG00000139350.11 protein_coding NEDD1 2 OTTHUMG00000170604.3 +19057 chr12 ENSEMBL gene 96979528 96979629 102.0 - 0 ENSG00000202368.1 misc_RNA RF00019 3 +19058 chr12 HAVANA gene 97024021 97051129 271.0 + 0 ENSG00000257470.1 lincRNA AC013417.1 2 OTTHUMG00000170122.1 overlapping_locus +19059 chr12 HAVANA gene 97150081 97154627 4547.0 - 0 ENSG00000279190.1 TEC AC007656.2 2 OTTHUMG00000185836.1 +19060 chr12 HAVANA gene 96985656 97185609 573.0 + 0 ENSG00000258131.1 lincRNA AC007656.1 2 OTTHUMG00000170121.1 overlapping_locus +19061 chr12 HAVANA gene 97272692 97276209 576.0 - 0 ENSG00000257920.1 lincRNA LINC02409 1 OTTHUMG00000170123.1 +19062 chr12 ENSEMBL gene 97491909 97491978 70.0 + 0 ENSG00000221479.3 miRNA MIR1251 3 +19063 chr12 ENSEMBL gene 97492462 97492597 136.0 + 0 ENSG00000273942.1 misc_RNA RF01963 3 +19064 chr12 ENSEMBL gene 97493178 97493286 109.0 + 0 ENSG00000274230.1 misc_RNA RF01964 3 +19065 chr12 ENSEMBL gene 97493897 97494003 107.0 + 0 ENSG00000275231.1 misc_RNA RF01965 3 +19066 chr12 ENSEMBL gene 97495932 97496057 126.0 + 0 ENSG00000273570.1 misc_RNA RF01966 3 +19067 chr12 ENSEMBL gene 97530656 97530858 203.0 + 0 ENSG00000275971.1 misc_RNA RF01967 3 +19068 chr12 ENSEMBL gene 97532691 97532958 268.0 + 0 ENSG00000274819.1 misc_RNA RF01968 3 +19069 chr12 ENSEMBL gene 97552137 97552228 92.0 - 0 ENSG00000251844.1 snoRNA RF00537 3 +19070 chr12 ENSEMBL gene 97560557 97560721 165.0 + 0 ENSG00000278802.1 misc_RNA RF01969 3 +19071 chr12 ENSEMBL gene 97560856 97561048 193.0 + 0 ENSG00000276398.1 misc_RNA RF01970 3 +19072 chr12 ENSEMBL gene 97563812 97563911 100.0 + 0 ENSG00000207586.1 miRNA MIR135A2 3 +19073 chr12 HAVANA gene 97563257 97563971 715.0 - 0 ENSG00000279798.1 TEC AC018659.2 2 OTTHUMG00000170149.1 +19074 chr12 ENSEMBL gene 97564174 97564327 154.0 + 0 ENSG00000277081.1 misc_RNA RF01971 3 +19075 chr12 HAVANA gene 97430884 97598415 6421.0 + 0 ENSG00000255794.7 processed_transcript RMST 2 OTTHUMG00000170148.2 ncRNA_host +19076 chr12 HAVANA gene 97679879 97680047 169.0 - 0 ENSG00000257157.1 processed_pseudogene AC018659.1 2 OTTHUMG00000170150.1 +19077 chr12 ENSEMBL gene 97721716 97721822 107.0 + 0 ENSG00000206899.1 snRNA RNU6-36P 3 +19078 chr12 HAVANA gene 97713412 97761859 5252.0 - 0 ENSG00000257501.6 transcribed_processed_pseudogene AC007424.1 1 OTTHUMG00000170151.3 pseudo_consens +19079 chr12 ENSEMBL gene 97939056 97939121 66.0 - 0 ENSG00000265861.1 miRNA MIR4495 3 +19080 chr12 ENSEMBL gene 97995383 97995448 66.0 - 0 ENSG00000263890.1 miRNA MIR4303 3 +19081 chr12 HAVANA gene 98113014 98292445 521.0 - 0 ENSG00000258312.1 lincRNA AC016152.1 2 OTTHUMG00000170161.1 +19082 chr12 HAVANA gene 98317741 98318349 609.0 + 0 ENSG00000257580.1 processed_pseudogene AC008055.1 1 OTTHUMG00000170162.2 pseudo_consens +19083 chr12 ENSEMBL gene 98417896 98418038 143.0 - 0 ENSG00000201296.1 snRNA RNU4-41P 3 +19084 chr12 HAVANA gene 98453835 98457145 3311.0 - 0 ENSG00000227825.4 transcribed_processed_pseudogene SLC9A7P1 1 OTTHUMG00000170629.1 pseudo_consens +19085 chr12 HAVANA gene 98485544 98503855 1918.0 - 0 ENSG00000245017.2 lincRNA LINC02453 2 OTTHUMG00000170208.2 +19086 chr12 HAVANA gene 98512973 98516422 3357.0 - 0 ENSG00000257167.2 antisense TMPO-AS1 2 OTTHUMG00000170209.3 +19087 chr12 HAVANA gene 98515512 98550379 8593.0 + 0 ENSG00000120802.13 protein_coding TMPO 1 OTTHUMG00000170210.4 +19088 chr12 HAVANA gene 98590723 98591214 492.0 - 0 ENSG00000225185.3 processed_pseudogene PPIAP8 1 OTTHUMG00000170630.1 pseudo_consens +19089 chr12 ENSEMBL gene 98599635 98599883 249.0 + 0 ENSG00000212443.1 snoRNA SNORA53 3 +19090 chr12 HAVANA gene 98593591 98606379 8896.0 + 0 ENSG00000075415.12 protein_coding SLC25A3 2 OTTHUMG00000170212.3 ncRNA_host +19091 chr12 HAVANA gene 98613405 98645113 4163.0 - 0 ENSG00000166130.14 protein_coding IKBIP 2 OTTHUMG00000170213.2 +19092 chr12 HAVANA gene 98645141 98735433 7908.0 + 0 ENSG00000120868.13 protein_coding APAF1 2 OTTHUMG00000170214.4 +19093 chr12 HAVANA gene 98794485 98794964 480.0 + 0 ENSG00000258204.1 processed_pseudogene AC008126.1 1 OTTHUMG00000170241.1 pseudo_consens +19094 chr12 HAVANA gene 98931682 98976656 512.0 + 0 ENSG00000257458.1 antisense AC069437.1 2 OTTHUMG00000170309.1 +19095 chr12 ENSEMBL gene 99083783 99083905 123.0 - 0 ENSG00000202324.1 rRNA_pseudogene RNA5SP366 3 +19096 chr12 HAVANA gene 99093359 99105011 1038.0 + 0 ENSG00000258039.2 antisense AC117377.1 2 OTTHUMG00000170310.2 +19097 chr12 HAVANA gene 99647753 99650046 1796.0 + 0 ENSG00000180219.1 protein_coding FAM71C 2 OTTHUMG00000170311.1 +19098 chr12 HAVANA gene 98726457 99984654 11053.0 - 0 ENSG00000185046.18 protein_coding ANKS1B 1 OTTHUMG00000170308.8 +19099 chr12 HAVANA gene 100009052 100009838 787.0 - 0 ENSG00000214203.4 processed_pseudogene RPS4XP1 1 OTTHUMG00000157676.1 pseudo_consens +19100 chr12 HAVANA gene 100026248 100027540 1293.0 - 0 ENSG00000279148.1 TEC AC126474.1 2 OTTHUMG00000170194.1 +19101 chr12 HAVANA gene 100032325 100034074 1750.0 - 0 ENSG00000280088.1 TEC AC126474.2 2 OTTHUMG00000170196.2 overlapping_locus +19102 chr12 HAVANA gene 100028455 100142848 6616.0 - 0 ENSG00000111647.12 protein_coding UHRF1BP1L 2 OTTHUMG00000170195.3 overlapping_locus +19103 chr12 HAVANA gene 100143058 100144671 418.0 + 0 ENSG00000257696.1 antisense AC010203.2 2 OTTHUMG00000170243.1 +19104 chr12 ENSEMBL gene 100158502 100158765 264.0 - 0 ENSG00000266610.2 misc_RNA RN7SL176P 3 +19105 chr12 HAVANA gene 100156357 100173659 10957.0 - 0 ENSG00000238105.7 transcribed_unprocessed_pseudogene GOLGA2P5 2 OTTHUMG00000167822.2 overlapping_locus +19106 chr12 ENSEMBL gene 100189884 100189949 66.0 + 0 ENSG00000221476.2 miRNA MIR1827 3 +19107 chr12 HAVANA gene 100173196 100199783 1405.0 - 0 ENSG00000257489.6 transcribed_unprocessed_pseudogene AC010203.1 2 OTTHUMG00000170244.2 overlapping_locus +19108 chr12 HAVANA gene 100199122 100241865 3813.0 + 0 ENSG00000075089.9 protein_coding ACTR6 2 OTTHUMG00000170245.3 +19109 chr12 ENSEMBL gene 100257688 100257790 103.0 - 0 ENSG00000206790.1 misc_RNA RF00019 3 +19110 chr12 HAVANA gene 100203669 100267079 3118.0 - 0 ENSG00000166153.16 protein_coding DEPDC4 2 OTTHUMG00000170318.2 ncRNA_host +19111 chr12 HAVANA gene 100267140 100341724 7481.0 + 0 ENSG00000136021.18 protein_coding SCYL2 2 OTTHUMG00000170319.7 +19112 chr12 HAVANA gene 100357079 100422059 4272.0 + 0 ENSG00000179520.10 protein_coding SLC17A8 2 OTTHUMG00000170358.2 +19113 chr12 HAVANA gene 100525186 100525420 235.0 - 0 ENSG00000271177.1 processed_pseudogene AC010200.2 1 OTTHUMG00000184773.1 pseudo_consens +19114 chr12 HAVANA gene 100473708 100564413 3460.0 + 0 ENSG00000012504.14 protein_coding NR1H4 1 OTTHUMG00000170359.8 +19115 chr12 HAVANA gene 100578744 100580197 1454.0 + 0 ENSG00000257803.2 processed_pseudogene AC010200.1 1 OTTHUMG00000170440.2 pseudo_consens,overlapping_locus +19116 chr12 HAVANA gene 100573683 100628286 6799.0 + 0 ENSG00000139354.10 protein_coding GAS2L3 1 OTTHUMG00000170439.3 overlapping_locus +19117 chr12 HAVANA gene 100852331 100859262 386.0 - 0 ENSG00000257325.1 antisense AC138360.1 2 OTTHUMG00000170497.1 +19118 chr12 HAVANA gene 101038420 101039094 557.0 - 0 ENSG00000258007.1 antisense AC063947.1 2 OTTHUMG00000170473.1 +19119 chr12 HAVANA gene 101066734 101069232 1256.0 + 0 ENSG00000258033.1 unprocessed_pseudogene AC063947.2 1 OTTHUMG00000170498.1 pseudo_consens,overlapping_locus +19120 chr12 HAVANA gene 100717526 101128641 4997.0 + 0 ENSG00000151572.17 protein_coding ANO4 2 OTTHUMG00000170465.7 overlapping_locus +19121 chr12 ENSEMBL gene 101199271 101199377 107.0 - 0 ENSG00000207414.1 snRNA RNU6-768P 3 +19122 chr12 HAVANA gene 101155493 101210407 4178.0 - 0 ENSG00000256870.2 protein_coding SLC5A8 2 OTTHUMG00000170499.1 ncRNA_host +19123 chr12 HAVANA gene 101228141 101228876 736.0 - 0 ENSG00000241744.1 processed_pseudogene AC079953.1 1 OTTHUMG00000157681.1 pseudo_consens +19124 chr12 HAVANA gene 101280109 101386616 10024.0 + 0 ENSG00000120800.4 protein_coding UTP20 2 OTTHUMG00000170270.1 +19125 chr12 HAVANA gene 101393120 101407820 4979.0 - 0 ENSG00000120805.13 protein_coding ARL1 1 OTTHUMG00000170271.3 +19126 chr12 HAVANA gene 101408372 101409060 379.0 - 0 ENSG00000257543.1 lincRNA AC063948.1 2 OTTHUMG00000170272.1 +19127 chr12 ENSEMBL gene 101411357 101411459 103.0 + 0 ENSG00000222890.1 snRNA RNU6-1068P 3 +19128 chr12 HAVANA gene 101424441 101424691 251.0 + 0 ENSG00000239413.1 processed_pseudogene RPS27P23 1 OTTHUMG00000157689.1 pseudo_consens +19129 chr12 ENSEMBL gene 101446825 101446932 108.0 + 0 ENSG00000206929.1 misc_RNA RF00019 3 +19130 chr12 ENSEMBL gene 101466705 101466820 116.0 + 0 ENSG00000202249.1 snRNA RNU5E-5P 3 +19131 chr12 ENSEMBL gene 101472339 101472456 118.0 + 0 ENSG00000252366.1 rRNA_pseudogene RNA5SP367 3 +19132 chr12 HAVANA gene 101475421 101486997 1132.0 + 0 ENSG00000166211.7 protein_coding SPIC 2 OTTHUMG00000170273.1 +19133 chr12 HAVANA gene 101646720 101659970 699.0 - 0 ENSG00000257514.5 antisense AC117505.1 2 OTTHUMG00000170387.1 +19134 chr12 HAVANA gene 101568353 101686018 7385.0 + 0 ENSG00000196091.13 protein_coding MYBPC1 1 OTTHUMG00000170274.4 +19135 chr12 HAVANA gene 101696002 101696450 449.0 - 0 ENSG00000274560.1 lincRNA AC010205.1 2 OTTHUMG00000187215.1 +19136 chr12 ENSEMBL gene 101719808 101719918 111.0 + 0 ENSG00000199933.1 misc_RNA RNY1P16 3 +19137 chr12 HAVANA gene 101728648 101739472 3829.0 - 0 ENSG00000139351.14 protein_coding SYCP3 2 OTTHUMG00000150132.2 +19138 chr12 HAVANA gene 101696947 101744140 6004.0 + 0 ENSG00000111666.10 protein_coding CHPT1 1 OTTHUMG00000170443.2 ncRNA_host +19139 chr12 ENSEMBL gene 101765406 101765509 104.0 - 0 ENSG00000222255.1 snRNA RNU6-101P 3 +19140 chr12 HAVANA gene 101773114 101773755 642.0 - 0 ENSG00000258230.2 transcribed_processed_pseudogene AC063950.1 1 OTTHUMG00000170445.2 pseudo_consens,overlapping_locus +19141 chr12 ENSEMBL gene 101779814 101779929 116.0 + 0 ENSG00000201168.1 rRNA_pseudogene RNA5SP368 3 +19142 chr12 ENSEMBL gene 101796410 101796502 93.0 - 0 ENSG00000222932.1 snRNA RNU6-172P 3 +19143 chr12 HAVANA gene 101745497 101830938 9620.0 - 0 ENSG00000111670.15 protein_coding GNPTAB 2 OTTHUMG00000170444.2 ncRNA_host,overlapping_locus +19144 chr12 ENSEMBL gene 101836820 101836927 108.0 + 0 ENSG00000223046.1 rRNA_pseudogene RNA5SP369 3 +19145 chr12 ENSEMBL gene 101871742 101871801 60.0 - 0 ENSG00000252863.1 snRNA RNU6-1183P 3 +19146 chr12 HAVANA gene 101873316 101873623 308.0 - 0 ENSG00000258153.1 processed_pseudogene HSPE1P4 1 OTTHUMG00000170446.1 pseudo_consens +19147 chr12 HAVANA gene 101923410 101924719 564.0 - 0 ENSG00000257202.1 antisense AC084398.2 2 OTTHUMG00000170448.1 +19148 chr12 HAVANA gene 101936216 101936674 459.0 + 0 ENSG00000241917.1 processed_pseudogene AC084398.1 1 OTTHUMG00000157691.1 pseudo_consens,overlapping_locus +19149 chr12 HAVANA gene 101954998 101962390 1316.0 - 0 ENSG00000258308.5 lincRNA AC079907.2 2 OTTHUMG00000170475.1 +19150 chr12 HAVANA gene 101963901 101964340 440.0 + 0 ENSG00000258288.1 processed_pseudogene NENFP2 1 OTTHUMG00000170476.1 pseudo_consens,overlapping_locus +19151 chr12 HAVANA gene 101877351 102012130 4180.0 + 0 ENSG00000136048.13 protein_coding DRAM1 1 OTTHUMG00000170447.2 overlapping_locus +19152 chr12 HAVANA gene 102012927 102062149 2593.0 - 0 ENSG00000120860.10 protein_coding WASHC3 2 OTTHUMG00000168187.1 +19153 chr12 HAVANA gene 102063355 102074820 374.0 + 0 ENSG00000257222.1 antisense AC079907.1 2 OTTHUMG00000170477.1 +19154 chr12 HAVANA gene 102073103 102120124 3492.0 - 0 ENSG00000075188.8 protein_coding NUP37 2 OTTHUMG00000170478.4 +19155 chr12 HAVANA gene 102120185 102197520 4745.0 + 0 ENSG00000185480.11 protein_coding PARPBP 1 OTTHUMG00000167923.3 +19156 chr12 HAVANA gene 102196459 102197845 766.0 - 0 ENSG00000183395.4 protein_coding PMCH 2 OTTHUMG00000170479.1 +19157 chr12 ENSEMBL gene 102217318 102217613 296.0 - 0 ENSG00000264554.2 misc_RNA RN7SL793P 3 +19158 chr12 HAVANA gene 102230027 102230533 507.0 - 0 ENSG00000258142.2 processed_pseudogene AC093023.1 1 OTTHUMG00000170480.2 pseudo_consens +19159 chr12 HAVANA gene 102197585 102402596 205012.0 + 0 ENSG00000281344.1 macro_lncRNA HELLPAR 2 OTTHUMG00000189570.1 overlapping_locus +19160 chr12 HAVANA gene 102304355 102463491 1323.0 + 0 ENSG00000283052.1 lincRNA LINC02456 2 OTTHUMG00000191608.1 overlapping_locus +19161 chr12 HAVANA gene 102395874 102481744 8122.0 - 0 ENSG00000017427.16 protein_coding IGF1 1 OTTHUMG00000149910.3 +19162 chr12 HAVANA gene 102513251 102513655 405.0 - 0 ENSG00000257254.1 processed_pseudogene AC010202.1 1 OTTHUMG00000170481.1 pseudo_consens +19163 chr12 HAVANA gene 102809280 102824399 3722.0 - 0 ENSG00000258169.1 lincRNA LINC00485 2 OTTHUMG00000169965.1 +19164 chr12 HAVANA gene 102953289 102953835 547.0 - 0 ENSG00000282964.1 sense_intronic AC026108.1 2 OTTHUMG00000191480.1 +19165 chr12 HAVANA gene 102836885 102958410 7731.0 - 0 ENSG00000171759.9 protein_coding PAH 1 OTTHUMG00000169966.4 +19166 chr12 HAVANA gene 102957686 102960516 2472.0 + 0 ENSG00000139352.3 protein_coding ASCL1 2 OTTHUMG00000169967.1 +19167 chr12 HAVANA gene 103151842 103168309 1253.0 + 0 ENSG00000257860.5 lincRNA AC068643.2 1 OTTHUMG00000170037.2 +19168 chr12 HAVANA gene 103080950 103178675 825.0 - 0 ENSG00000257703.5 lincRNA AC068643.1 2 OTTHUMG00000170036.1 +19169 chr12 HAVANA gene 103237591 103496010 4898.0 - 0 ENSG00000179088.14 protein_coding C12orf42 2 OTTHUMG00000169988.4 +19170 chr12 HAVANA gene 103503381 103504936 1556.0 + 0 ENSG00000257415.1 processed_pseudogene AC084364.1 1 OTTHUMG00000170053.1 pseudo_consens +19171 chr12 HAVANA gene 103505411 103506174 395.0 - 0 ENSG00000257994.1 unprocessed_pseudogene AC084364.2 2 OTTHUMG00000170054.1 +19172 chr12 HAVANA gene 103547794 103559815 3149.0 + 0 ENSG00000257762.5 lincRNA LINC02401 2 OTTHUMG00000170055.1 +19173 chr12 ENSEMBL gene 103592112 103592243 132.0 + 0 ENSG00000212594.1 snoRNA RF00096 3 +19174 chr12 HAVANA gene 103654780 103657995 478.0 - 0 ENSG00000257737.1 antisense AC025265.2 2 OTTHUMG00000170057.1 +19175 chr12 HAVANA gene 103668575 103669406 468.0 - 0 ENSG00000257766.1 antisense AC025265.3 2 OTTHUMG00000170058.1 +19176 chr12 HAVANA gene 103587273 103766727 9288.0 + 0 ENSG00000136011.14 protein_coding STAB2 2 OTTHUMG00000170056.1 ncRNA_host +19177 chr12 HAVANA gene 103746315 103768858 1063.0 - 0 ENSG00000257681.1 antisense AC025265.1 2 OTTHUMG00000170059.1 +19178 chr12 HAVANA gene 103819610 103822085 413.0 + 0 ENSG00000257754.1 antisense AC012555.2 2 OTTHUMG00000170060.1 +19179 chr12 HAVANA gene 103770453 103841197 8722.0 - 0 ENSG00000111696.11 protein_coding NT5DC3 2 OTTHUMG00000157017.2 +19180 chr12 HAVANA gene 103841451 103844664 674.0 + 0 ENSG00000257327.1 lincRNA AC012555.1 2 OTTHUMG00000170096.1 +19181 chr12 HAVANA gene 103843749 103930211 6495.0 - 0 ENSG00000214198.8 transcribed_unitary_pseudogene TTC41P 2 OTTHUMG00000170097.2 +19182 chr12 ENSEMBL gene 103930425 103930555 131.0 + 0 ENSG00000284503.1 miRNA MIR3652 3 +19183 chr12 HAVANA gene 103930107 103953645 4695.0 + 0 ENSG00000166598.14 protein_coding HSP90B1 1 OTTHUMG00000170118.2 ncRNA_host +19184 chr12 HAVANA gene 103950202 103965708 3096.0 - 0 ENSG00000204954.9 protein_coding C12orf73 2 OTTHUMG00000170119.2 +19185 chr12 HAVANA gene 103965804 103988874 4903.0 + 0 ENSG00000139372.14 protein_coding TDG 1 OTTHUMG00000168418.3 +19186 chr12 HAVANA gene 104030779 104031543 765.0 + 0 ENSG00000216285.5 processed_pseudogene AC078819.1 2 OTTHUMG00000170174.1 +19187 chr12 HAVANA gene 103988984 104064183 3271.0 - 0 ENSG00000120820.12 protein_coding GLT8D2 1 OTTHUMG00000170120.2 +19188 chr12 HAVANA gene 104064457 104106524 6773.0 + 0 ENSG00000111727.11 protein_coding HCFC2 1 OTTHUMG00000170175.3 +19189 chr12 ENSEMBL gene 104125236 104125356 121.0 + 0 ENSG00000199415.1 rRNA_pseudogene RNA5SP370 3 +19190 chr12 HAVANA gene 104117077 104138289 4956.0 - 0 ENSG00000120837.7 protein_coding NFYB 2 OTTHUMG00000170176.3 +19191 chr12 HAVANA gene 104170395 104177659 428.0 + 0 ENSG00000257193.1 lincRNA LINC02385 2 OTTHUMG00000170177.1 +19192 chr12 HAVANA gene 104265309 104265836 528.0 + 0 ENSG00000213442.5 processed_pseudogene RPL18AP3 2 OTTHUMG00000157701.1 overlapping_locus +19193 chr12 HAVANA gene 104262314 104280722 701.0 - 0 ENSG00000257732.1 antisense AC089983.1 2 OTTHUMG00000170178.1 +19194 chr12 HAVANA gene 104303739 104305205 1467.0 + 0 ENSG00000255150.2 protein_coding EID3 2 OTTHUMG00000165912.2 retrogene,overlapping_locus +19195 chr12 HAVANA gene 104215779 104350305 6708.0 + 0 ENSG00000198431.15 protein_coding TXNRD1 1 OTTHUMG00000166481.4 overlapping_locus +19196 chr12 HAVANA gene 104514029 104514439 411.0 + 0 ENSG00000258111.1 processed_pseudogene AC079316.1 1 OTTHUMG00000169817.2 pseudo_consens,overlapping_locus +19197 chr12 HAVANA gene 104552073 104553447 1375.0 + 0 ENSG00000279176.1 TEC AC079316.2 2 OTTHUMG00000169818.1 overlapping_locus +19198 chr12 ENSEMBL gene 104591633 104591716 84.0 + 0 ENSG00000264295.1 miRNA MIR3922 3 +19199 chr12 HAVANA gene 104455295 104762014 6492.0 + 0 ENSG00000171310.10 protein_coding CHST11 2 OTTHUMG00000169803.4 ncRNA_host,overlapping_locus +19200 chr12 ENSEMBL gene 104851824 104851918 95.0 + 0 ENSG00000222579.1 misc_RNA RF00019 3 +19201 chr12 HAVANA gene 104802553 104958744 5151.0 - 0 ENSG00000136052.9 protein_coding SLC41A2 2 OTTHUMG00000156965.5 +19202 chr12 HAVANA gene 104976749 104978027 1279.0 - 0 ENSG00000257758.1 processed_pseudogene KRT18P20 1 OTTHUMG00000169821.1 pseudo_consens +19203 chr12 HAVANA gene 104986310 105074197 25887.0 + 0 ENSG00000151131.10 protein_coding C12orf45 1 OTTHUMG00000169822.4 +19204 chr12 HAVANA gene 105019784 105084577 8507.0 - 0 ENSG00000136010.13 protein_coding ALDH1L2 2 OTTHUMG00000169823.3 +19205 chr12 HAVANA gene 105102472 105107179 641.0 - 0 ENSG00000257999.1 antisense AC016257.1 2 OTTHUMG00000169828.1 +19206 chr12 HAVANA gene 105107324 105169134 7698.0 + 0 ENSG00000136051.14 protein_coding WASHC4 2 OTTHUMG00000169838.12 +19207 chr12 HAVANA gene 105173296 105236238 5124.0 - 0 ENSG00000136044.11 protein_coding APPL2 1 OTTHUMG00000169853.4 +19208 chr12 HAVANA gene 105304867 105327017 549.0 - 0 ENSG00000257642.1 antisense KCCAT198 2 OTTHUMG00000169859.1 +19209 chr12 HAVANA gene 105235290 105396097 2693.0 + 0 ENSG00000235162.8 protein_coding C12orf75 2 OTTHUMG00000150129.8 +19210 chr12 HAVANA gene 105704203 105744062 2586.0 + 0 ENSG00000257859.1 lincRNA CASC18 2 OTTHUMG00000169725.1 +19211 chr12 HAVANA gene 106015897 106017006 1110.0 + 0 ENSG00000257773.1 processed_pseudogene ST13P3 1 OTTHUMG00000169726.1 pseudo_consens +19212 chr12 HAVANA gene 106050961 106058254 632.0 - 0 ENSG00000257890.1 lincRNA AC011595.2 2 OTTHUMG00000169728.1 +19213 chr12 HAVANA gene 106103163 106106165 753.0 + 0 ENSG00000257438.1 antisense AC011595.1 2 OTTHUMG00000169764.1 +19214 chr12 HAVANA gene 106063340 106140033 7008.0 - 0 ENSG00000074590.13 protein_coding NUAK1 1 OTTHUMG00000169763.4 +19215 chr12 HAVANA gene 106170004 106172437 2434.0 + 0 ENSG00000257611.1 processed_pseudogene AC010182.1 1 OTTHUMG00000169727.1 pseudo_consens +19216 chr12 HAVANA gene 106245613 106246956 312.0 - 0 ENSG00000258355.1 sense_intronic AC079174.1 1 OTTHUMG00000170086.1 overlapping_locus +19217 chr12 HAVANA gene 106250759 106252786 2028.0 + 0 ENSG00000277715.1 antisense AC079174.2 2 OTTHUMG00000187254.1 +19218 chr12 ENSEMBL gene 106282927 106282989 63.0 - 0 ENSG00000238609.1 snRNA RNU7-94P 3 +19219 chr12 HAVANA gene 106237877 106304279 3638.0 - 0 ENSG00000136026.13 protein_coding CKAP4 1 OTTHUMG00000170085.2 ncRNA_host,overlapping_locus +19220 chr12 HAVANA gene 106301929 106347015 6558.0 + 0 ENSG00000166046.10 protein_coding TCP11L2 1 OTTHUMG00000170087.3 +19221 chr12 HAVANA gene 106357658 106510198 4858.0 + 0 ENSG00000013503.9 protein_coding POLR3B 2 OTTHUMG00000170077.2 +19222 chr12 HAVANA gene 106680758 106684700 863.0 - 0 ENSG00000257711.1 antisense AC079385.2 2 OTTHUMG00000170061.1 overlapping_locus +19223 chr12 HAVANA gene 106714924 106733066 809.0 - 0 ENSG00000257918.1 antisense AC079385.3 2 OTTHUMG00000170079.1 overlapping_locus +19224 chr12 HAVANA gene 106582907 106762803 6783.0 + 0 ENSG00000111783.12 protein_coding RFX4 2 OTTHUMG00000169173.5 +19225 chr12 HAVANA gene 106495958 106774918 890.0 - 0 ENSG00000257545.4 antisense AC079385.1 1 OTTHUMG00000170078.2 overlapping_locus +19226 chr12 HAVANA gene 106774595 106889316 7795.0 + 0 ENSG00000111785.19 protein_coding RIC8B 1 OTTHUMG00000144188.9 +19227 chr12 HAVANA gene 106901283 106901984 348.0 - 0 ENSG00000257119.1 processed_pseudogene EEF1B2P4 1 OTTHUMG00000170035.1 pseudo_consens +19228 chr12 HAVANA gene 106910757 106911109 353.0 + 0 ENSG00000240631.1 processed_pseudogene RPL30P12 1 OTTHUMG00000157716.1 pseudo_consens +19229 chr12 HAVANA gene 106954029 106955497 1469.0 - 0 ENSG00000260329.1 antisense AC007541.1 2 OTTHUMG00000172911.2 +19230 chr12 HAVANA gene 106955719 106978778 4768.0 + 0 ENSG00000151135.9 protein_coding TMEM263 1 OTTHUMG00000170014.2 +19231 chr12 HAVANA gene 106977291 106987166 3626.0 - 0 ENSG00000120832.9 protein_coding MTERF2 1 OTTHUMG00000170007.3 +19232 chr12 HAVANA gene 106991364 107093829 5062.0 - 0 ENSG00000008405.11 protein_coding CRY1 1 OTTHUMG00000170005.2 +19233 chr12 HAVANA gene 107093298 107123314 502.0 + 0 ENSG00000257548.1 antisense AC078929.1 2 OTTHUMG00000170006.1 +19234 chr12 HAVANA gene 107271394 107271846 453.0 + 0 ENSG00000257444.1 processed_pseudogene SETP7 1 OTTHUMG00000169999.1 pseudo_consens +19235 chr12 ENSEMBL gene 107374747 107374827 81.0 + 0 ENSG00000200897.1 snoRNA RF00284 3 +19236 chr12 ENSEMBL gene 107486511 107486635 125.0 - 0 ENSG00000222302.1 rRNA_pseudogene RNA5SP371 3 +19237 chr12 HAVANA gene 107610034 107617721 507.0 - 0 ENSG00000257579.1 antisense AC007540.1 2 OTTHUMG00000170000.1 +19238 chr12 ENSEMBL gene 107650789 107650892 104.0 + 0 ENSG00000222160.1 misc_RNA RF00019 3 +19239 chr12 HAVANA gene 107318413 107659642 7924.0 + 0 ENSG00000151136.14 protein_coding BTBD11 2 OTTHUMG00000150413.3 ncRNA_host +19240 chr12 HAVANA gene 107685732 107713167 2876.0 + 0 ENSG00000136045.11 protein_coding PWP1 1 OTTHUMG00000169913.2 +19241 chr12 HAVANA gene 107719599 107720133 535.0 + 0 ENSG00000240441.1 processed_pseudogene AC007622.1 1 OTTHUMG00000157727.1 pseudo_consens +19242 chr12 HAVANA gene 107736555 107759968 1714.0 + 0 ENSG00000258136.1 antisense AC007622.2 2 OTTHUMG00000169915.1 +19243 chr12 HAVANA gene 107732866 107761272 4777.0 - 0 ENSG00000110851.11 protein_coding PRDM4 1 OTTHUMG00000169914.2 +19244 chr12 HAVANA gene 107774385 107776644 2260.0 + 0 ENSG00000187855.5 protein_coding ASCL4 2 OTTHUMG00000156964.1 +19245 chr12 HAVANA gene 107832858 107835030 452.0 - 0 ENSG00000257141.1 lincRNA AC126177.2 2 OTTHUMG00000169719.1 +19246 chr12 HAVANA gene 107835541 107836555 1015.0 - 0 ENSG00000274395.1 lincRNA AC126177.8 2 OTTHUMG00000187381.1 +19247 chr12 HAVANA gene 107839291 107864562 865.0 - 0 ENSG00000257398.6 lincRNA AC126177.4 2 OTTHUMG00000169720.3 +19248 chr12 HAVANA gene 107880581 107883386 1009.0 + 0 ENSG00000257951.2 unprocessed_pseudogene AC126177.6 2 OTTHUMG00000169721.2 +19249 chr12 HAVANA gene 107887730 107889886 688.0 + 0 ENSG00000257392.1 unprocessed_pseudogene AC126177.3 2 OTTHUMG00000169722.1 +19250 chr12 HAVANA gene 107899638 107899815 178.0 + 0 ENSG00000257426.1 unprocessed_pseudogene AC126177.5 2 OTTHUMG00000169723.1 +19251 chr12 HAVANA gene 107903270 107903948 679.0 - 0 ENSG00000258072.1 processed_pseudogene AC126177.7 1 OTTHUMG00000169724.1 pseudo_consens +19252 chr12 HAVANA gene 107910403 107912620 2218.0 - 0 ENSG00000257129.1 transcribed_processed_pseudogene AC126177.1 1 OTTHUMG00000169712.1 pseudo_consens +19253 chr12 HAVANA gene 108129471 108250537 6557.0 + 0 ENSG00000075035.9 protein_coding WSCD2 1 OTTHUMG00000169579.3 +19254 chr12 HAVANA gene 108281103 108282235 1133.0 - 0 ENSG00000257281.1 processed_pseudogene AC009729.1 1 OTTHUMG00000169575.1 pseudo_consens +19255 chr12 HAVANA gene 108288044 108339341 5690.0 - 0 ENSG00000174600.13 protein_coding CMKLR1 2 OTTHUMG00000169576.2 +19256 chr12 HAVANA gene 108434130 108492585 3143.0 - 0 ENSG00000247213.6 antisense LINC01498 2 OTTHUMG00000169577.1 +19257 chr12 HAVANA gene 108515185 108525837 4267.0 + 0 ENSG00000198855.6 protein_coding FICD 1 OTTHUMG00000169569.1 +19258 chr12 HAVANA gene 108522580 108561400 7271.0 - 0 ENSG00000075856.11 protein_coding SART3 1 OTTHUMG00000169449.4 +19259 chr12 HAVANA gene 108562582 108569384 4439.0 + 0 ENSG00000136003.15 protein_coding ISCU 1 OTTHUMG00000168420.4 +19260 chr12 HAVANA gene 108589846 108598320 3189.0 - 0 ENSG00000183160.8 protein_coding TMEM119 2 OTTHUMG00000169410.3 +19261 chr12 HAVANA gene 108622277 108633959 2494.0 - 0 ENSG00000110876.9 protein_coding SELPLG 1 OTTHUMG00000169411.1 +19262 chr12 ENSEMBL gene 108635810 108635870 61.0 + 0 ENSG00000284388.1 miRNA MIR4496 3 +19263 chr12 HAVANA gene 108628687 108641318 859.0 + 0 ENSG00000257221.3 antisense AC007569.1 2 OTTHUMG00000169412.1 ncRNA_host +19264 chr12 ENSEMBL gene 108668448 108668508 61.0 + 0 ENSG00000238457.1 snRNA RNU7-169P 3 +19265 chr12 HAVANA gene 108645109 108731596 6532.0 - 0 ENSG00000110880.10 protein_coding CORO1C 2 OTTHUMG00000169381.3 +19266 chr12 ENSEMBL gene 108738484 108738604 121.0 + 0 ENSG00000200060.1 misc_RNA RF00019 3 +19267 chr12 ENSEMBL gene 108778144 108778271 128.0 - 0 ENSG00000273499.1 snoRNA RF00561 3 +19268 chr12 HAVANA gene 108778912 108779166 255.0 + 0 ENSG00000280110.1 TEC AC087893.2 2 OTTHUMG00000178772.1 +19269 chr12 HAVANA gene 108833721 108834384 664.0 - 0 ENSG00000274598.1 sense_intronic AC087893.1 2 OTTHUMG00000187432.1 overlapping_locus +19270 chr12 ENSEMBL gene 108836908 108837006 99.0 - 0 ENSG00000207622.1 miRNA MIR619 3 +19271 chr12 HAVANA gene 108778192 108857590 14537.0 - 0 ENSG00000084112.14 protein_coding SSH1 2 OTTHUMG00000169371.3 ncRNA_host,overlapping_locus +19272 chr12 HAVANA gene 108858932 108901043 3883.0 + 0 ENSG00000110887.7 protein_coding DAO 1 OTTHUMG00000169360.2 +19273 chr12 ENSEMBL gene 108926435 108926541 107.0 - 0 ENSG00000201324.1 snRNA RNU6-361P 3 +19274 chr12 HAVANA gene 108907741 109021240 7270.0 - 0 ENSG00000166111.9 protein_coding SVOP 2 OTTHUMG00000169432.4 ncRNA_host,overlapping_locus +19275 chr12 HAVANA gene 109020833 109021240 408.0 - 0 ENSG00000279630.1 TEC AC190387.1 2 OTTHUMG00000169244.1 overlapping_locus +19276 chr12 HAVANA gene 109052350 109053952 656.0 - 0 ENSG00000256262.1 antisense USP30-AS1 2 OTTHUMG00000169245.1 +19277 chr12 ENSEMBL gene 109059986 109060100 115.0 + 0 ENSG00000212138.1 rRNA_pseudogene RNA5SP372 3 +19278 chr12 HAVANA gene 109023089 109088026 5135.0 + 0 ENSG00000135093.12 protein_coding USP30 1 OTTHUMG00000133613.5 +19279 chr12 HAVANA gene 109088188 109093631 2290.0 - 0 ENSG00000189046.10 protein_coding ALKBH2 1 OTTHUMG00000169246.4 +19280 chr12 HAVANA gene 109097574 109110992 2567.0 + 0 ENSG00000076248.10 protein_coding UNG 2 OTTHUMG00000169247.1 +19281 chr12 HAVANA gene 109111218 109125594 910.0 + 0 ENSG00000256139.2 sense_overlapping AC007637.1 2 OTTHUMG00000185814.1 overlapping_locus +19282 chr12 HAVANA gene 109116595 109268226 14505.0 + 0 ENSG00000076555.15 protein_coding ACACB 2 OTTHUMG00000169250.5 overlapping_locus +19283 chr12 HAVANA gene 109277979 109309220 3471.0 - 0 ENSG00000139445.17 protein_coding FOXN4 2 OTTHUMG00000152868.3 +19284 chr12 HAVANA gene 109354083 109359488 716.0 - 0 ENSG00000256560.1 lincRNA LINC01486 2 OTTHUMG00000169251.1 +19285 chr12 HAVANA gene 109445410 109447497 603.0 - 0 ENSG00000255655.1 antisense AC007570.1 2 OTTHUMG00000133568.2 +19286 chr12 HAVANA gene 109347903 109455523 4792.0 + 0 ENSG00000174527.9 protein_coding MYO1H 1 OTTHUMG00000169252.4 +19287 chr12 HAVANA gene 109448656 109477544 9865.0 - 0 ENSG00000110906.12 protein_coding KCTD10 1 OTTHUMG00000169253.4 +19288 chr12 HAVANA gene 109477402 109536705 12453.0 + 0 ENSG00000151148.13 protein_coding UBE3B 2 OTTHUMG00000169254.4 +19289 chr12 ENSEMBL gene 109567975 109568115 141.0 - 0 ENSG00000200274.1 snRNA RNU4-32P 3 +19290 chr12 HAVANA gene 109553737 109573874 6290.0 - 0 ENSG00000139428.11 protein_coding MMAB 2 OTTHUMG00000169255.5 ncRNA_host +19291 chr12 HAVANA gene 109573255 109598117 6480.0 + 0 ENSG00000110921.13 protein_coding MVK 2 OTTHUMG00000169256.5 +19292 chr12 ENSEMBL gene 109662863 109663183 321.0 - 0 ENSG00000200794.1 misc_RNA RN7SKP250 3 +19293 chr12 HAVANA gene 109714228 109770507 3722.0 + 0 ENSG00000139438.5 protein_coding FAM222A 2 OTTHUMG00000169260.1 +19294 chr12 HAVANA gene 109734166 109773508 1068.0 - 0 ENSG00000255650.5 antisense FAM222A-AS1 2 OTTHUMG00000169261.1 +19295 chr12 HAVANA gene 109783085 109833401 3759.0 - 0 ENSG00000111199.10 protein_coding TRPV4 2 OTTHUMG00000169277.2 +19296 chr12 ENSEMBL gene 109833348 109833436 89.0 + 0 ENSG00000263510.1 miRNA MIR4497 3 +19297 chr12 HAVANA gene 109859767 109860420 343.0 - 0 ENSG00000256351.1 processed_pseudogene AC007834.2 1 OTTHUMG00000169279.1 pseudo_consens,overlapping_locus +19298 chr12 ENSEMBL gene 109866214 109866509 296.0 - 0 ENSG00000241413.3 misc_RNA RN7SL441P 3 +19299 chr12 HAVANA gene 109850943 109880488 2696.0 - 0 ENSG00000139433.9 protein_coding GLTP 2 OTTHUMG00000169278.2 ncRNA_host,overlapping_locus +19300 chr12 HAVANA gene 109880676 109888467 728.0 + 0 ENSG00000249094.2 lincRNA AC007834.1 2 OTTHUMG00000169280.1 +19301 chr12 HAVANA gene 109948389 109949029 641.0 + 0 ENSG00000277299.1 antisense AC084876.1 2 OTTHUMG00000187452.1 overlapping_locus +19302 chr12 HAVANA gene 109900264 109983841 9054.0 + 0 ENSG00000139437.17 protein_coding TCHP 2 OTTHUMG00000169281.4 overlapping_locus +19303 chr12 HAVANA gene 109929792 109996389 13542.0 - 0 ENSG00000139436.20 protein_coding GIT2 1 OTTHUMG00000169313.5 +19304 chr12 HAVANA gene 109997419 109999127 1709.0 - 0 ENSG00000280426.1 TEC AC084876.2 2 OTTHUMG00000172928.1 +19305 chr12 HAVANA gene 110032245 110032803 559.0 + 0 ENSG00000277595.1 sense_intronic AC007546.1 2 OTTHUMG00000187458.1 overlapping_locus +19306 chr12 HAVANA gene 109999186 110039763 7350.0 + 0 ENSG00000076513.16 protein_coding ANKRD13A 1 OTTHUMG00000169314.5 overlapping_locus +19307 chr12 HAVANA gene 110056916 110057275 360.0 - 0 ENSG00000279360.1 TEC AC007546.2 2 OTTHUMG00000169316.1 overlapping_locus +19308 chr12 HAVANA gene 110027028 110073686 7052.0 - 0 ENSG00000174456.13 protein_coding C12orf76 1 OTTHUMG00000169315.6 overlapping_locus +19309 chr12 HAVANA gene 110124335 110218797 7005.0 + 0 ENSG00000122970.15 protein_coding IFT81 2 OTTHUMG00000169326.2 +19310 chr12 HAVANA gene 110280756 110351093 13745.0 + 0 ENSG00000174437.16 protein_coding ATP2A2 1 OTTHUMG00000169327.4 +19311 chr12 ENSEMBL gene 110360452 110360746 295.0 - 0 ENSG00000276956.1 misc_RNA RN7SL769P 3 +19312 chr12 HAVANA gene 110372900 110403730 6009.0 - 0 ENSG00000196510.12 protein_coding ANAPC7 1 OTTHUMG00000157009.5 overlapping_locus +19313 chr12 HAVANA gene 110429959 110430282 324.0 - 0 ENSG00000258011.2 processed_pseudogene HMGA1P3 1 OTTHUMG00000169523.2 pseudo_consens,overlapping_locus +19314 chr12 HAVANA gene 110387463 110445548 946.0 - 0 ENSG00000258210.1 processed_transcript AC144548.1 2 OTTHUMG00000169522.1 overlapping_locus +19315 chr12 HAVANA gene 110434825 110450422 3025.0 - 0 ENSG00000111229.15 protein_coding ARPC3 2 OTTHUMG00000134333.4 overlapping_locus +19316 chr12 HAVANA gene 110460988 110461362 375.0 + 0 ENSG00000241680.1 processed_pseudogene RPL31P49 1 OTTHUMG00000157730.1 pseudo_consens +19317 chr12 HAVANA gene 110452484 110469268 2595.0 - 0 ENSG00000111231.8 protein_coding GPN3 1 OTTHUMG00000169524.5 +19318 chr12 HAVANA gene 110468364 110490385 2753.0 + 0 ENSG00000204856.11 protein_coding FAM216A 2 OTTHUMG00000169526.2 +19319 chr12 ENSEMBL gene 110496352 110496421 70.0 - 0 ENSG00000202335.1 snoRNA RF00278 3 +19320 chr12 HAVANA gene 110491097 110502117 3211.0 - 0 ENSG00000111237.18 protein_coding VPS29 1 OTTHUMG00000169527.4 ncRNA_host +19321 chr12 HAVANA gene 110501614 110503441 1828.0 + 0 ENSG00000278993.1 TEC AC002350.1 2 OTTHUMG00000169528.1 overlapping_locus +19322 chr12 HAVANA gene 110501655 110532086 3178.0 + 0 ENSG00000151164.18 protein_coding RAD9B 1 OTTHUMG00000152952.3 overlapping_locus +19323 chr12 HAVANA gene 110533245 110583320 5687.0 - 0 ENSG00000196850.5 protein_coding PPTC7 2 OTTHUMG00000169529.2 +19324 chr12 ENSEMBL gene 110625645 110625917 273.0 - 0 ENSG00000263537.2 misc_RNA RN7SL387P 3 +19325 chr12 HAVANA gene 110614027 110649430 9605.0 + 0 ENSG00000204852.15 protein_coding TCTN1 1 OTTHUMG00000150051.8 +19326 chr12 HAVANA gene 110627841 110704950 3688.0 - 0 ENSG00000122986.13 protein_coding HVCN1 1 OTTHUMG00000169530.3 +19327 chr12 HAVANA gene 110719680 110742939 6906.0 - 0 ENSG00000186298.11 protein_coding PPP1CC 2 OTTHUMG00000169531.4 +19328 chr12 HAVANA gene 110744549 110746206 1658.0 + 0 ENSG00000279925.1 TEC AC144522.1 2 OTTHUMG00000169532.1 +19329 chr12 HAVANA gene 110841538 110842387 850.0 - 0 ENSG00000241286.2 processed_pseudogene RPL29P25 1 OTTHUMG00000157733.2 pseudo_consens +19330 chr12 HAVANA gene 110831779 110845963 581.0 + 0 ENSG00000257268.1 lincRNA AC002375.1 2 OTTHUMG00000169533.1 +19331 chr12 HAVANA gene 110846769 110907535 2184.0 + 0 ENSG00000173093.12 protein_coding CCDC63 1 OTTHUMG00000169534.4 +19332 chr12 HAVANA gene 110910819 110920722 1362.0 - 0 ENSG00000111245.14 protein_coding MYL2 2 OTTHUMG00000169535.2 +19333 chr12 HAVANA gene 110951683 110957812 594.0 - 0 ENSG00000258240.5 lincRNA AC002351.1 2 OTTHUMG00000169537.1 +19334 chr12 HAVANA gene 110936585 110958208 1522.0 + 0 ENSG00000185847.7 lincRNA LINC01405 2 OTTHUMG00000169536.1 +19335 chr12 ENSEMBL gene 111304142 111304209 68.0 + 0 ENSG00000273700.1 miRNA MIR6760 3 +19336 chr12 ENSEMBL gene 111339527 111339621 95.0 + 0 ENSG00000253080.1 rRNA_pseudogene RNA5SP373 3 +19337 chr12 HAVANA gene 111034024 111350554 7648.0 + 0 ENSG00000111249.13 protein_coding CUX2 2 OTTHUMG00000169546.3 ncRNA_host +19338 chr12 HAVANA gene 111360651 111369121 3361.0 - 0 ENSG00000198324.13 protein_coding PHETA1 2 OTTHUMG00000169547.4 +19339 chr12 HAVANA gene 111381867 111385638 1805.0 + 0 ENSG00000257539.2 processed_pseudogene HSPA8P14 1 OTTHUMG00000169549.2 pseudo_consens,overlapping_locus +19340 chr12 HAVANA gene 111369282 111403310 353.0 + 0 ENSG00000257595.2 lincRNA LINC02356 2 OTTHUMG00000169548.1 overlapping_locus +19341 chr12 HAVANA gene 111405948 111451623 5682.0 + 0 ENSG00000111252.10 protein_coding SH2B3 1 OTTHUMG00000169550.5 +19342 chr12 ENSEMBL gene 111564821 111564883 63.0 - 0 ENSG00000272215.1 snRNA RF00066 3 +19343 chr12 HAVANA gene 111581379 111581773 395.0 + 0 ENSG00000238168.5 processed_pseudogene AC137055.1 1 OTTHUMG00000169598.2 pseudo_consens +19344 chr12 HAVANA gene 111443485 111599676 16504.0 - 0 ENSG00000204842.15 protein_coding ATXN2 1 OTTHUMG00000133475.11 ncRNA_host +19345 chr12 HAVANA gene 111599498 111600256 485.0 + 0 ENSG00000258099.1 antisense ATXN2-AS 2 OTTHUMG00000169599.1 +19346 chr12 HAVANA gene 111669852 111670362 511.0 - 0 ENSG00000258359.1 processed_pseudogene PCNPP1 1 OTTHUMG00000169601.1 pseudo_consens,overlapping_locus +19347 chr12 HAVANA gene 111642146 111685986 4686.0 - 0 ENSG00000089234.15 protein_coding BRAP 1 OTTHUMG00000169600.4 overlapping_locus +19348 chr12 HAVANA gene 111686056 111757107 8931.0 + 0 ENSG00000111271.14 protein_coding ACAD10 1 OTTHUMG00000169602.4 overlapping_locus +19349 chr12 HAVANA gene 111753890 111791418 784.0 + 0 ENSG00000257767.2 protein_coding AC002996.1 2 OTTHUMG00000162267.5 overlapping_locus +19350 chr12 ENSEMBL gene 111799834 111799905 72.0 + 0 ENSG00000274697.1 miRNA MIR6761 3 +19351 chr12 HAVANA gene 111766887 111817529 9720.0 + 0 ENSG00000111275.12 protein_coding ALDH2 2 OTTHUMG00000169603.4 ncRNA_host,overlapping_locus +19352 chr12 HAVANA gene 111839764 111842902 2290.0 - 0 ENSG00000234608.7 lincRNA MAPKAPK5-AS1 2 OTTHUMG00000141273.4 +19353 chr12 HAVANA gene 111879338 111880249 603.0 - 0 ENSG00000244060.2 processed_pseudogene RPS2P41 1 OTTHUMG00000157736.2 pseudo_consens +19354 chr12 HAVANA gene 111899263 111901391 2129.0 + 0 ENSG00000229186.4 unitary_pseudogene ADAM1A 2 OTTHUMG00000154247.2 +19355 chr12 HAVANA gene 111841978 111902238 14006.0 + 0 ENSG00000089022.13 protein_coding MAPKAPK5 2 OTTHUMG00000169605.6 +19356 chr12 HAVANA gene 111927018 111929017 2000.0 + 0 ENSG00000226469.1 unitary_pseudogene ADAM1B 2 OTTHUMG00000154246.1 +19357 chr12 HAVANA gene 111992996 111993875 880.0 + 0 ENSG00000258373.1 processed_pseudogene SLC25A3P2 1 OTTHUMG00000169607.1 pseudo_consens +19358 chr12 HAVANA gene 112000739 112000985 247.0 - 0 ENSG00000257624.1 processed_pseudogene AC004024.1 1 OTTHUMG00000169608.1 pseudo_consens,overlapping_locus +19359 chr12 HAVANA gene 111931282 112013185 7989.0 - 0 ENSG00000198270.12 protein_coding TMEM116 1 OTTHUMG00000169606.7 overlapping_locus +19360 chr12 HAVANA gene 112018804 112019430 627.0 - 0 ENSG00000274227.1 antisense AC073575.2 2 OTTHUMG00000187449.1 +19361 chr12 HAVANA gene 112013316 112023451 3083.0 + 0 ENSG00000089248.6 protein_coding ERP29 1 OTTHUMG00000169637.3 +19362 chr12 ENSEMBL gene 112037599 112037715 117.0 - 0 ENSG00000266370.1 miRNA MIR3657 3 +19363 chr12 HAVANA gene 112063909 112065755 596.0 + 0 ENSG00000258323.1 antisense AC073575.1 1 OTTHUMG00000169639.1 +19364 chr12 ENSEMBL gene 112069104 112069209 106.0 + 0 ENSG00000200688.1 misc_RNA RF00019 3 +19365 chr12 HAVANA gene 112026689 112109022 10128.0 - 0 ENSG00000111300.9 protein_coding NAA25 2 OTTHUMG00000169638.3 ncRNA_host +19366 chr12 ENSEMBL gene 112149360 112149472 113.0 + 0 ENSG00000200135.1 misc_RNA RF00019 3 +19367 chr12 HAVANA gene 112125501 112153609 3940.0 + 0 ENSG00000135148.11 protein_coding TRAFD1 1 OTTHUMG00000169640.4 ncRNA_host +19368 chr12 ENSEMBL gene 112163258 112163321 64.0 - 0 ENSG00000283793.1 miRNA MIR6861 3 +19369 chr12 HAVANA gene 112256800 112259091 751.0 + 0 ENSG00000257494.1 antisense AC004217.1 2 OTTHUMG00000169683.1 +19370 chr12 ENSEMBL gene 112267077 112267394 318.0 + 0 ENSG00000201428.1 misc_RNA RN7SKP71 3 +19371 chr12 HAVANA gene 112301870 112302663 794.0 - 0 ENSG00000213152.5 processed_pseudogene RPL7AP60 1 OTTHUMG00000157739.2 pseudo_consens,overlapping_locus +19372 chr12 HAVANA gene 112321759 112323089 878.0 + 0 ENSG00000257658.1 processed_pseudogene AC004217.2 1 OTTHUMG00000169684.1 pseudo_consens +19373 chr12 HAVANA gene 112160188 112382439 21572.0 - 0 ENSG00000173064.12 protein_coding HECTD4 1 OTTHUMG00000150719.9 ncRNA_host,overlapping_locus +19374 chr12 HAVANA gene 112405190 112418838 4447.0 - 0 ENSG00000089009.15 protein_coding RPL6 2 OTTHUMG00000169685.4 +19375 chr12 HAVANA gene 112418351 112509913 7023.0 + 0 ENSG00000179295.17 protein_coding PTPN11 2 OTTHUMG00000134334.4 +19376 chr12 ENSEMBL gene 112695034 112695176 143.0 - 0 ENSG00000283507.1 miRNA MIR1302-1 3 +19377 chr12 HAVANA gene 112570380 112898881 10369.0 + 0 ENSG00000089169.14 protein_coding RPH3A 1 OTTHUMG00000169713.14 +19378 chr12 HAVANA gene 112906777 112933222 4947.0 + 0 ENSG00000089127.12 protein_coding OAS1 1 OTTHUMG00000169792.6 +19379 chr12 HAVANA gene 112938352 112973249 8251.0 + 0 ENSG00000111331.12 protein_coding OAS3 2 OTTHUMG00000169795.2 +19380 chr12 HAVANA gene 112978395 113011723 6264.0 + 0 ENSG00000111335.12 protein_coding OAS2 2 OTTHUMG00000169802.3 +19381 chr12 HAVANA gene 113015607 113016098 492.0 + 0 ENSG00000258159.1 processed_pseudogene IMMP1LP2 1 OTTHUMG00000169801.1 pseudo_consens +19382 chr12 HAVANA gene 112907628 113017751 575.0 - 0 ENSG00000257452.1 antisense AC004551.1 2 OTTHUMG00000169793.1 +19383 chr12 HAVANA gene 113054062 113054435 374.0 + 0 ENSG00000242461.1 processed_pseudogene RPS15AP32 1 OTTHUMG00000157740.1 pseudo_consens +19384 chr12 HAVANA gene 113056709 113098028 4387.0 + 0 ENSG00000135144.7 protein_coding DTX1 2 OTTHUMG00000169610.2 +19385 chr12 HAVANA gene 113098819 113136239 4813.0 - 0 ENSG00000111344.11 protein_coding RASAL1 1 OTTHUMG00000169705.2 +19386 chr12 ENSEMBL gene 113156763 113156861 99.0 - 0 ENSG00000199899.2 misc_RNA RF00019 3 +19387 chr12 ENSEMBL gene 113159113 113159177 65.0 - 0 ENSG00000276908.1 miRNA MIR7106 3 +19388 chr12 HAVANA gene 113149858 113159276 1726.0 + 0 ENSG00000186710.11 protein_coding CFAP73 1 OTTHUMG00000169655.2 +19389 chr12 ENSEMBL gene 113178423 113178519 97.0 - 0 ENSG00000201208.1 misc_RNA RF00019 3 +19390 chr12 HAVANA gene 113157174 113185479 5064.0 - 0 ENSG00000123064.12 protein_coding DDX54 1 OTTHUMG00000169676.3 ncRNA_host +19391 chr12 HAVANA gene 113185624 113192161 248.0 - 0 ENSG00000257286.1 antisense AC089999.1 2 OTTHUMG00000169656.1 +19392 chr12 HAVANA gene 113185526 113192368 2309.0 + 0 ENSG00000139405.15 protein_coding RITA1 2 OTTHUMG00000169643.3 +19393 chr12 HAVANA gene 113195441 113221094 2460.0 - 0 ENSG00000166578.9 protein_coding IQCD 2 OTTHUMG00000169659.1 +19394 chr12 HAVANA gene 113249466 113250042 577.0 + 0 ENSG00000277566.1 sense_intronic AC089999.2 2 OTTHUMG00000187464.1 overlapping_locus +19395 chr12 ENSEMBL gene 113291523 113291608 86.0 + 0 ENSG00000274822.1 miRNA MIR6762 3 +19396 chr12 HAVANA gene 113221050 113298585 8728.0 + 0 ENSG00000186815.12 protein_coding TPCN1 1 OTTHUMG00000169625.6 ncRNA_host,overlapping_locus +19397 chr12 HAVANA gene 113298759 113359493 6768.0 - 0 ENSG00000089060.11 protein_coding SLC8B1 2 OTTHUMG00000169566.5 +19398 chr12 HAVANA gene 113358566 113391625 5260.0 + 0 ENSG00000151176.7 protein_coding PLBD2 1 OTTHUMG00000169567.2 +19399 chr12 HAVANA gene 113392445 113426301 3006.0 - 0 ENSG00000135094.10 protein_coding SDS 2 OTTHUMG00000169554.2 +19400 chr12 HAVANA gene 113422237 113438276 2216.0 + 0 ENSG00000139410.14 protein_coding SDSL 2 OTTHUMG00000169551.4 +19401 chr12 HAVANA gene 113462034 113472280 3125.0 - 0 ENSG00000089116.3 protein_coding LHX5 2 OTTHUMG00000169552.3 +19402 chr12 HAVANA gene 113472003 113480624 522.0 + 0 ENSG00000257935.2 antisense LHX5-AS1 2 OTTHUMG00000169553.2 +19403 chr12 HAVANA gene 113679459 113773683 4484.0 - 0 ENSG00000249550.6 lincRNA LINC01234 2 OTTHUMG00000169644.1 +19404 chr12 HAVANA gene 113789542 113789807 266.0 - 0 ENSG00000257231.1 processed_pseudogene DYNLL1P4 1 OTTHUMG00000169645.1 pseudo_consens +19405 chr12 HAVANA gene 113932569 113937255 570.0 + 0 ENSG00000257359.1 antisense AC073863.1 2 OTTHUMG00000169647.1 +19406 chr12 HAVANA gene 113816738 113966371 5912.0 - 0 ENSG00000122965.10 protein_coding RBM19 2 OTTHUMG00000169646.2 +19407 chr12 HAVANA gene 114077133 114079902 559.0 + 0 ENSG00000257603.1 lincRNA AC010183.1 2 OTTHUMG00000169476.1 +19408 chr12 HAVANA gene 114097682 114098223 542.0 + 0 ENSG00000257300.1 processed_pseudogene HAUS8P1 1 OTTHUMG00000169478.1 pseudo_consens,overlapping_locus +19409 chr12 HAVANA gene 114104542 114105931 1390.0 + 0 ENSG00000257915.1 processed_pseudogene GLULP5 1 OTTHUMG00000169479.1 pseudo_consens,overlapping_locus +19410 chr12 HAVANA gene 114080381 114113489 390.0 + 0 ENSG00000257997.5 lincRNA AC010183.2 2 OTTHUMG00000169477.1 overlapping_locus +19411 chr12 HAVANA gene 114238970 114241770 474.0 - 0 ENSG00000257476.1 lincRNA LINC02459 2 OTTHUMG00000169468.1 +19412 chr12 HAVANA gene 114353931 114408442 4363.0 - 0 ENSG00000089225.19 protein_coding TBX5 1 OTTHUMG00000166191.3 +19413 chr12 HAVANA gene 114408191 114412831 4183.0 + 0 ENSG00000255399.3 antisense TBX5-AS1 1 OTTHUMG00000166190.2 +19414 chr12 ENSEMBL gene 114504876 114505187 312.0 - 0 ENSG00000222982.1 misc_RNA RN7SKP216 3 +19415 chr12 HAVANA gene 114548854 114549852 375.0 + 0 ENSG00000255830.2 processed_pseudogene AC069240.1 1 OTTHUMG00000169590.2 pseudo_consens +19416 chr12 HAVANA gene 114588194 114588802 609.0 + 0 ENSG00000258244.1 processed_pseudogene OSTF1P1 1 OTTHUMG00000169591.1 pseudo_consens +19417 chr12 HAVANA gene 114621761 114622922 366.0 + 0 ENSG00000258254.1 lincRNA AC010177.1 2 OTTHUMG00000169480.1 +19418 chr12 ENSEMBL gene 114657949 114658062 114.0 - 0 ENSG00000199220.1 misc_RNA RF00019 3 +19419 chr12 HAVANA gene 114670254 114684164 5950.0 - 0 ENSG00000135111.15 protein_coding TBX3 2 OTTHUMG00000169586.2 +19420 chr12 ENSEMBL gene 114737704 114737798 95.0 + 0 ENSG00000252459.1 snoRNA RF00443 3 +19421 chr12 HAVANA gene 114713811 114767957 1330.0 + 0 ENSG00000257817.1 lincRNA AC026765.2 2 OTTHUMG00000169584.1 ncRNA_host +19422 chr12 HAVANA gene 114768674 114771851 435.0 + 0 ENSG00000257517.1 lincRNA AC026765.1 2 OTTHUMG00000169585.1 +19423 chr12 HAVANA gene 114894632 114898529 3032.0 - 0 ENSG00000283459.1 lincRNA AC009804.2 2 OTTHUMG00000191797.1 +19424 chr12 HAVANA gene 114929757 114929935 179.0 - 0 ENSG00000274879.1 processed_pseudogene AC009804.1 2 OTTHUMG00000187899.1 +19425 chr12 HAVANA gene 115077325 115080153 1538.0 + 0 ENSG00000257958.1 lincRNA AC008125.1 2 OTTHUMG00000169467.1 +19426 chr12 HAVANA gene 115263170 115270596 553.0 + 0 ENSG00000257519.1 lincRNA AC078880.1 2 OTTHUMG00000169466.1 +19427 chr12 HAVANA gene 115299588 115300708 1121.0 - 0 ENSG00000271579.1 lincRNA AC078880.3 2 OTTHUMG00000185160.1 +19428 chr12 HAVANA gene 115318657 115320405 1749.0 - 0 ENSG00000276308.1 lincRNA AC078880.4 2 OTTHUMG00000187123.1 +19429 chr12 HAVANA gene 115332146 115332566 421.0 - 0 ENSG00000276972.1 lincRNA AC078880.5 2 OTTHUMG00000187124.1 +19430 chr12 HAVANA gene 115363012 115364745 843.0 + 0 ENSG00000257726.1 lincRNA AC078880.2 2 OTTHUMG00000169465.1 +19431 chr12 HAVANA gene 115576676 115577615 540.0 + 0 ENSG00000258280.1 lincRNA AC009803.3 2 OTTHUMG00000169400.1 overlapping_locus +19432 chr12 HAVANA gene 115569664 115581739 665.0 + 0 ENSG00000258108.1 lincRNA AC009803.2 2 OTTHUMG00000169399.2 overlapping_locus +19433 chr12 HAVANA gene 115592604 115592983 380.0 - 0 ENSG00000241656.1 processed_pseudogene UBA52P7 1 OTTHUMG00000158498.1 pseudo_consens,overlapping_locus +19434 chr12 HAVANA gene 115582061 115639734 785.0 - 0 ENSG00000257407.1 lincRNA AC009803.1 2 OTTHUMG00000169401.1 overlapping_locus +19435 chr12 ENSEMBL gene 115717725 115718013 289.0 + 0 ENSG00000240205.3 misc_RNA RN7SL865P 3 +19436 chr12 HAVANA gene 115755262 115799936 441.0 + 0 ENSG00000257781.1 lincRNA AC009387.1 2 OTTHUMG00000169402.1 +19437 chr12 ENSEMBL gene 115852648 115852718 71.0 - 0 ENSG00000200112.1 snoRNA RF00275 3 +19438 chr12 HAVANA gene 115810359 115886137 497.0 - 0 ENSG00000257683.1 lincRNA LINC02463 2 OTTHUMG00000169403.1 ncRNA_host +19439 chr12 HAVANA gene 115961187 115962733 501.0 + 0 ENSG00000258034.1 antisense AC012157.1 2 OTTHUMG00000169460.1 +19440 chr12 ENSEMBL gene 116082570 116082676 107.0 + 0 ENSG00000200665.1 snRNA RNU6-1188P 3 +19441 chr12 ENSEMBL gene 116148560 116148654 95.0 - 0 ENSG00000207967.1 miRNA MIR620 3 +19442 chr12 HAVANA gene 116169045 116169258 214.0 + 0 ENSG00000257979.1 processed_pseudogene SNRPGP18 1 OTTHUMG00000169455.1 pseudo_consens +19443 chr12 HAVANA gene 116174502 116181295 493.0 - 0 ENSG00000258337.1 sense_intronic AC130895.1 2 OTTHUMG00000169461.1 overlapping_locus +19444 chr12 HAVANA gene 115953872 116277719 37364.0 - 0 ENSG00000123066.8 protein_coding MED13L 1 OTTHUMG00000169404.9 ncRNA_host,overlapping_locus +19445 chr12 HAVANA gene 116368764 116389471 600.0 + 0 ENSG00000258346.1 lincRNA AC079384.1 2 OTTHUMG00000169463.1 +19446 chr12 ENSEMBL gene 116428252 116428318 67.0 - 0 ENSG00000264037.1 miRNA MIR4472-2 3 +19447 chr12 HAVANA gene 116517858 116518820 596.0 + 0 ENSG00000258018.1 lincRNA LINC02457 2 OTTHUMG00000169394.1 +19448 chr12 HAVANA gene 116533422 116536518 2065.0 + 0 ENSG00000196668.3 processed_transcript LINC00173 2 OTTHUMG00000157726.1 +19449 chr12 HAVANA gene 116548105 116576448 1767.0 + 0 ENSG00000258102.3 protein_coding MAP1LC3B2 2 OTTHUMG00000171525.2 retrogene +19450 chr12 HAVANA gene 116580974 116583672 2699.0 + 0 ENSG00000275898.1 lincRNA AC125603.4 2 OTTHUMG00000172915.1 +19451 chr12 HAVANA gene 116599270 116603585 486.0 + 0 ENSG00000258249.1 lincRNA AC125603.3 2 OTTHUMG00000169388.1 +19452 chr12 HAVANA gene 116661582 116698065 876.0 + 0 ENSG00000257883.1 lincRNA AC125603.2 2 OTTHUMG00000169385.1 +19453 chr12 HAVANA gene 116698336 116703130 366.0 + 0 ENSG00000257654.1 lincRNA AC125603.1 2 OTTHUMG00000169386.1 +19454 chr12 HAVANA gene 116710185 116738070 8664.0 - 0 ENSG00000111412.5 protein_coding C12orf49 2 OTTHUMG00000169392.2 +19455 chr12 HAVANA gene 116755395 116755874 480.0 - 0 ENSG00000239374.1 processed_pseudogene AC090013.1 2 OTTHUMG00000157742.1 +19456 chr12 ENSEMBL gene 116782105 116782208 104.0 + 0 ENSG00000201382.1 snRNA RNU6-558P 3 +19457 chr12 HAVANA gene 116801023 116801477 455.0 + 0 ENSG00000275467.1 lincRNA AC083806.3 2 OTTHUMG00000187132.1 overlapping_locus +19458 chr12 HAVANA gene 116738178 116853631 6487.0 + 0 ENSG00000135119.14 protein_coding RNFT2 2 OTTHUMG00000150882.4 ncRNA_host,overlapping_locus +19459 chr12 HAVANA gene 116856144 116881441 6853.0 - 0 ENSG00000135116.9 protein_coding HRK 2 OTTHUMG00000169328.3 +19460 chr12 HAVANA gene 116908312 116908627 316.0 + 0 ENSG00000240100.1 processed_pseudogene AC083806.1 1 OTTHUMG00000157748.1 pseudo_consens +19461 chr12 HAVANA gene 116948738 116951422 2685.0 - 0 ENSG00000274554.1 antisense AC083806.2 2 OTTHUMG00000187137.1 +19462 chr12 HAVANA gene 116977442 116987337 4196.0 - 0 ENSG00000257279.1 antisense AC127164.1 2 OTTHUMG00000169330.1 +19463 chr12 HAVANA gene 117002463 117003152 690.0 + 0 ENSG00000277840.1 sense_intronic AC026368.1 2 OTTHUMG00000187138.1 overlapping_locus +19464 chr12 HAVANA gene 116910956 117031148 5169.0 + 0 ENSG00000174989.12 protein_coding FBXW8 2 OTTHUMG00000169329.2 overlapping_locus +19465 chr12 HAVANA gene 117038923 117099479 1926.0 - 0 ENSG00000088992.17 protein_coding TESC 1 OTTHUMG00000144168.4 +19466 chr12 HAVANA gene 117099481 117142091 1053.0 + 0 ENSG00000258285.1 lincRNA TESC-AS1 2 OTTHUMG00000169494.1 +19467 chr12 HAVANA gene 117141988 117190531 6949.0 - 0 ENSG00000135108.14 protein_coding FBXO21 1 OTTHUMG00000169495.2 +19468 chr12 HAVANA gene 117245551 117246164 324.0 - 0 ENSG00000257465.2 processed_pseudogene ELOCP32 1 OTTHUMG00000169496.2 pseudo_consens,overlapping_locus +19469 chr12 HAVANA gene 117208142 117452170 13113.0 - 0 ENSG00000089250.18 protein_coding NOS1 1 OTTHUMG00000137376.3 overlapping_locus +19470 chr12 HAVANA gene 117453012 117456986 562.0 + 0 ENSG00000255686.1 lincRNA AC073864.1 2 OTTHUMG00000169111.1 +19471 chr12 HAVANA gene 117889454 117891008 548.0 + 0 ENSG00000256071.1 antisense AC084291.1 2 OTTHUMG00000169021.1 +19472 chr12 HAVANA gene 117453012 117968983 18294.0 - 0 ENSG00000171435.13 protein_coding KSR2 2 OTTHUMG00000169020.3 +19473 chr12 HAVANA gene 118024817 118025518 702.0 - 0 ENSG00000277873.1 antisense AC131159.2 2 OTTHUMG00000187211.1 +19474 chr12 HAVANA gene 118013588 118033130 3249.0 + 0 ENSG00000111445.13 protein_coding RFC5 2 OTTHUMG00000156438.4 +19475 chr12 HAVANA gene 118037869 118038081 213.0 + 0 ENSG00000276292.1 antisense AC131159.1 2 OTTHUMG00000187214.1 +19476 chr12 HAVANA gene 118032694 118062430 4616.0 - 0 ENSG00000176871.8 protein_coding WSB2 1 OTTHUMG00000168885.5 +19477 chr12 HAVANA gene 118066398 118066725 328.0 + 0 ENSG00000274859.1 antisense AC131238.1 2 OTTHUMG00000187217.1 +19478 chr12 HAVANA gene 118063593 118136026 8350.0 - 0 ENSG00000176834.13 protein_coding VSIG10 1 OTTHUMG00000168835.8 +19479 chr12 HAVANA gene 118135858 118145584 1780.0 + 0 ENSG00000089220.4 protein_coding PEBP1 2 OTTHUMG00000168860.1 +19480 chr12 HAVANA gene 118246084 118246962 879.0 + 0 ENSG00000240342.3 processed_pseudogene RPS2P5 2 OTTHUMG00000157753.1 +19481 chr12 HAVANA gene 118149801 118372945 10570.0 - 0 ENSG00000135090.13 protein_coding TAOK3 1 OTTHUMG00000168875.10 +19482 chr12 HAVANA gene 118375350 118376275 611.0 - 0 ENSG00000270482.1 lincRNA AC026367.1 2 OTTHUMG00000185168.1 +19483 chr12 HAVANA gene 118376380 118418031 5731.0 + 0 ENSG00000111707.11 protein_coding SUDS3 2 OTTHUMG00000168884.1 +19484 chr12 HAVANA gene 118428281 118428870 590.0 + 0 ENSG00000275759.1 lincRNA AC026367.3 2 OTTHUMG00000187234.1 +19485 chr12 HAVANA gene 118430147 118430699 553.0 + 0 ENSG00000275409.1 lincRNA AC026367.2 2 OTTHUMG00000187235.1 +19486 chr12 HAVANA gene 118645315 118648724 536.0 - 0 ENSG00000255714.1 lincRNA LINC02460 1 OTTHUMG00000168901.1 +19487 chr12 HAVANA gene 118737964 118738511 548.0 - 0 ENSG00000241590.1 processed_pseudogene RPL17P37 1 OTTHUMG00000157755.1 pseudo_consens +19488 chr12 HAVANA gene 118758754 118761679 460.0 - 0 ENSG00000256750.1 lincRNA LINC02423 1 OTTHUMG00000168902.1 +19489 chr12 HAVANA gene 118773032 118775137 680.0 - 0 ENSG00000255618.1 lincRNA LINC02440 2 OTTHUMG00000168911.1 +19490 chr12 ENSEMBL gene 118829681 118829805 125.0 + 0 ENSG00000199809.1 rRNA_pseudogene RNA5SP374 3 +19491 chr12 HAVANA gene 118818804 118833536 450.0 - 0 ENSG00000255814.1 lincRNA LINC02439 1 OTTHUMG00000168912.1 +19492 chr12 ENSEMBL gene 118888434 118888564 131.0 - 0 ENSG00000201042.1 snoRNA RF00428 3 +19493 chr12 HAVANA gene 118849354 118908930 570.0 - 0 ENSG00000256149.1 lincRNA AC087863.1 2 OTTHUMG00000168913.1 ncRNA_host +19494 chr12 ENSEMBL gene 118993857 118994159 303.0 + 0 ENSG00000244112.3 misc_RNA RN7SL508P 3 +19495 chr12 HAVANA gene 118989727 119001842 918.0 + 0 ENSG00000256031.2 sense_intronic AC087885.1 1 OTTHUMG00000168930.3 ncRNA_host,overlapping_locus +19496 chr12 HAVANA gene 119031039 119116961 607.0 - 0 ENSG00000257095.1 antisense AC084361.1 2 OTTHUMG00000168929.1 +19497 chr12 HAVANA gene 118981495 119163051 8835.0 + 0 ENSG00000139767.9 protein_coding SRRM4 2 OTTHUMG00000168928.3 ncRNA_host,overlapping_locus +19498 chr12 HAVANA gene 119174065 119176484 577.0 - 0 ENSG00000256884.1 antisense AC084880.4 2 OTTHUMG00000168931.1 +19499 chr12 HAVANA gene 119182048 119183259 541.0 - 0 ENSG00000256609.1 antisense AC084880.3 1 OTTHUMG00000168934.1 +19500 chr12 HAVANA gene 119194850 119195394 545.0 + 0 ENSG00000213144.2 processed_pseudogene AC084880.1 1 OTTHUMG00000168933.1 pseudo_consens,overlapping_locus +19501 chr12 HAVANA gene 119178642 119221131 2860.0 + 0 ENSG00000152137.6 protein_coding HSPB8 1 OTTHUMG00000168932.2 overlapping_locus +19502 chr12 HAVANA gene 119225834 119259017 501.0 - 0 ENSG00000256311.1 antisense AC084880.2 2 OTTHUMG00000168935.1 +19503 chr12 HAVANA gene 119283825 119303380 2381.0 - 0 ENSG00000281196.1 lincRNA LINC00934 2 OTTHUMG00000189518.1 +19504 chr12 HAVANA gene 119334712 119541047 3440.0 + 0 ENSG00000183273.6 protein_coding CCDC60 2 OTTHUMG00000168943.1 +19505 chr12 ENSEMBL gene 119631090 119631386 297.0 - 0 ENSG00000252886.1 misc_RNA RN7SKP197 3 +19506 chr12 HAVANA gene 119593459 119643066 3146.0 + 0 ENSG00000224982.3 protein_coding TMEM233 2 OTTHUMG00000168944.3 +19507 chr12 HAVANA gene 119387987 119668079 1013.0 - 0 ENSG00000248636.6 lincRNA AC002070.1 2 OTTHUMG00000168955.1 ncRNA_host +19508 chr12 HAVANA gene 119667753 119681630 6246.0 + 0 ENSG00000111725.10 protein_coding PRKAB1 1 OTTHUMG00000168954.4 +19509 chr12 HAVANA gene 119699768 119701011 451.0 + 0 ENSG00000255692.1 antisense AC002563.1 1 OTTHUMG00000168976.1 +19510 chr12 ENSEMBL gene 119713634 119713724 91.0 - 0 ENSG00000283768.1 miRNA MIR1178 3 +19511 chr12 HAVANA gene 119685790 119877291 13230.0 - 0 ENSG00000122966.15 protein_coding CIT 1 OTTHUMG00000134325.8 ncRNA_host +19512 chr12 HAVANA gene 119959424 119959754 331.0 + 0 ENSG00000226729.3 processed_pseudogene RPL35AP30 1 OTTHUMG00000157759.1 pseudo_consens +19513 chr12 ENSEMBL gene 120018900 120019261 362.0 + 0 ENSG00000278250.1 misc_RNA RF00017 3 +19514 chr12 HAVANA gene 120057035 120057180 146.0 + 0 ENSG00000255575.1 processed_pseudogene AC004812.1 2 OTTHUMG00000169158.2 overlapping_locus +19515 chr12 HAVANA gene 119989869 120094494 5484.0 + 0 ENSG00000135127.11 protein_coding BICDL1 1 OTTHUMG00000169311.5 ncRNA_host,overlapping_locus +19516 chr12 HAVANA gene 120095095 120117502 4022.0 - 0 ENSG00000111737.11 protein_coding RAB35 2 OTTHUMG00000169159.4 +19517 chr12 HAVANA gene 120116907 120119000 2094.0 + 0 ENSG00000277283.1 antisense AC004812.2 2 OTTHUMG00000187237.1 +19518 chr12 ENSEMBL gene 120155434 120155499 66.0 - 0 ENSG00000266704.1 miRNA MIR4498 3 +19519 chr12 HAVANA gene 120127203 120194710 9654.0 - 0 ENSG00000089154.10 protein_coding GCN1 2 OTTHUMG00000169338.2 ncRNA_host +19520 chr12 HAVANA gene 120196686 120201235 4001.0 - 0 ENSG00000089157.15 protein_coding RPLP0 1 OTTHUMG00000169317.9 +19521 chr12 HAVANA gene 120201291 120213138 2380.0 + 0 ENSG00000255857.5 antisense PXN-AS1 2 OTTHUMG00000169166.1 +19522 chr12 HAVANA gene 120224744 120225421 678.0 + 0 ENSG00000275936.1 antisense AC004263.1 2 OTTHUMG00000187240.1 +19523 chr12 HAVANA gene 120247460 120247791 332.0 + 0 ENSG00000240925.1 processed_pseudogene RPS20P31 1 OTTHUMG00000157789.1 pseudo_consens +19524 chr12 HAVANA gene 120210439 120265771 7460.0 - 0 ENSG00000089159.16 protein_coding PXN 1 OTTHUMG00000169169.9 +19525 chr12 HAVANA gene 120282303 120282716 414.0 + 0 ENSG00000123009.4 processed_pseudogene NME2P1 1 OTTHUMG00000168971.1 pseudo_consens +19526 chr12 ENSEMBL gene 120291763 120291903 141.0 - 0 ENSG00000202538.1 snRNA RNU4-2 3 +19527 chr12 ENSEMBL gene 120293097 120293237 141.0 - 0 ENSG00000200795.1 snRNA RNU4-1 3 +19528 chr12 HAVANA gene 120302316 120313249 1222.0 + 0 ENSG00000089163.4 protein_coding SIRT4 2 OTTHUMG00000169028.3 +19529 chr12 ENSEMBL gene 120313238 120313341 104.0 - 0 ENSG00000252659.1 snRNA RNU6-1088P 3 +19530 chr12 HAVANA gene 120322111 120327789 638.0 - 0 ENSG00000170890.13 protein_coding PLA2G1B 1 OTTHUMG00000169343.1 +19531 chr12 HAVANA gene 120341330 120369180 3090.0 - 0 ENSG00000135097.6 protein_coding MSI1 2 OTTHUMG00000169344.2 +19532 chr12 HAVANA gene 120369440 120371688 498.0 + 0 ENSG00000239881.1 transcribed_processed_pseudogene RPS27P25 1 OTTHUMG00000157795.2 pseudo_consens +19533 chr12 HAVANA gene 120389546 120395994 365.0 + 0 ENSG00000256695.1 lincRNA AC003982.1 2 OTTHUMG00000169024.1 +19534 chr12 HAVANA gene 120438090 120440742 1344.0 + 0 ENSG00000111775.2 protein_coding COX6A1 2 OTTHUMG00000047791.3 overlapping_locus +19535 chr12 HAVANA gene 120443961 120446412 1442.0 - 0 ENSG00000170855.3 protein_coding TRIAP1 1 OTTHUMG00000047787.3 +19536 chr12 HAVANA gene 120450437 120450803 367.0 - 0 ENSG00000219355.2 processed_pseudogene RPL31P52 1 OTTHUMG00000047789.2 pseudo_consens +19537 chr12 HAVANA gene 120438198 120460006 552.0 + 0 ENSG00000111780.8 protein_coding AL021546.1 1 OTTHUMG00000169346.1 overlapping_locus +19538 chr12 HAVANA gene 120446438 120463749 4422.0 + 0 ENSG00000257218.5 protein_coding GATC 2 OTTHUMG00000047788.5 overlapping_locus +19539 chr12 HAVANA gene 120461668 120469793 3744.0 - 0 ENSG00000111786.8 protein_coding SRSF9 2 OTTHUMG00000047790.4 +19540 chr12 HAVANA gene 120490328 120495940 1901.0 - 0 ENSG00000248008.2 antisense NRAV 2 OTTHUMG00000169374.1 +19541 chr12 HAVANA gene 120469850 120498493 2957.0 + 0 ENSG00000088986.10 protein_coding DYNLL1 2 OTTHUMG00000169368.4 +19542 chr12 HAVANA gene 120500735 120501090 356.0 - 0 ENSG00000278344.1 lincRNA AC063943.1 2 OTTHUMG00000187243.1 +19543 chr12 ENSEMBL gene 120504571 120504659 89.0 - 0 ENSG00000222601.1 misc_RNA RF00019 3 +19544 chr12 HAVANA gene 120522664 120523443 453.0 - 0 ENSG00000241030.1 processed_pseudogene RPL29P24 1 OTTHUMG00000157799.1 pseudo_consens,overlapping_locus +19545 chr12 HAVANA gene 120503274 120534434 2523.0 - 0 ENSG00000110871.14 protein_coding COQ5 1 OTTHUMG00000169375.5 ncRNA_host,overlapping_locus +19546 chr12 HAVANA gene 120533480 120577594 5911.0 + 0 ENSG00000022840.15 protein_coding RNF10 1 OTTHUMG00000168999.16 +19547 chr12 HAVANA gene 120578764 120581398 2173.0 - 0 ENSG00000167272.10 protein_coding POP5 2 OTTHUMG00000169023.2 +19548 chr12 HAVANA gene 120594015 120594548 534.0 - 0 ENSG00000242137.1 processed_pseudogene RPL11P5 1 OTTHUMG00000157800.1 pseudo_consens +19549 chr12 HAVANA gene 120629611 120641591 1119.0 - 0 ENSG00000256008.2 antisense AC125616.1 2 OTTHUMG00000169186.2 +19550 chr12 HAVANA gene 120640552 120667324 5858.0 + 0 ENSG00000157782.9 protein_coding CABP1 2 OTTHUMG00000156794.2 +19551 chr12 HAVANA gene 120697124 120699541 907.0 - 0 ENSG00000256364.1 antisense AC069234.2 2 OTTHUMG00000169200.1 +19552 chr12 HAVANA gene 120686869 120701864 6723.0 + 0 ENSG00000110917.7 protein_coding MLEC 1 OTTHUMG00000169187.4 +19553 chr12 HAVANA gene 120703867 120704282 416.0 + 0 ENSG00000277423.1 lincRNA AC069234.5 2 OTTHUMG00000187244.1 +19554 chr12 HAVANA gene 120709112 120709523 412.0 + 0 ENSG00000276188.1 lincRNA AC069234.4 2 OTTHUMG00000187246.1 +19555 chr12 ENSEMBL gene 120723193 120723266 74.0 + 0 ENSG00000284143.1 miRNA MIR4700 3 +19556 chr12 HAVANA gene 120721507 120723639 569.0 - 0 ENSG00000256569.1 antisense AC069234.3 2 OTTHUMG00000169202.1 +19557 chr12 HAVANA gene 120710435 120723640 5195.0 + 0 ENSG00000175970.10 protein_coding UNC119B 2 OTTHUMG00000169201.2 ncRNA_host +19558 chr12 HAVANA gene 120725735 120740008 2648.0 + 0 ENSG00000122971.8 protein_coding ACADS 2 OTTHUMG00000169203.1 +19559 chr12 HAVANA gene 120740470 120761592 583.0 - 0 ENSG00000255946.1 antisense AC069234.1 2 OTTHUMG00000169204.1 +19560 chr12 HAVANA gene 120845110 120845647 538.0 - 0 ENSG00000213137.3 processed_pseudogene ARF1P2 1 OTTHUMG00000169223.1 pseudo_consens,overlapping_locus +19561 chr12 HAVANA gene 120762510 120904371 6672.0 - 0 ENSG00000157837.15 protein_coding SPPL3 1 OTTHUMG00000169232.6 overlapping_locus +19562 chr12 HAVANA gene 120914400 120915123 724.0 + 0 ENSG00000231313.2 processed_pseudogene CLIC1P1 1 OTTHUMG00000169145.1 pseudo_consens +19563 chr12 HAVANA gene 120916745 120917236 492.0 + 0 ENSG00000244585.1 processed_pseudogene RPL12P33 1 OTTHUMG00000169146.1 pseudo_consens +19564 chr12 HAVANA gene 120941728 120980965 3859.0 - 0 ENSG00000241388.5 processed_transcript HNF1A-AS1 2 OTTHUMG00000185474.3 +19565 chr12 HAVANA gene 120978543 121002512 5028.0 + 0 ENSG00000135100.17 protein_coding HNF1A 2 OTTHUMG00000151015.8 +19566 chr12 HAVANA gene 121000486 121016502 6140.0 - 0 ENSG00000157895.11 protein_coding C12orf43 2 OTTHUMG00000169150.6 +19567 chr12 HAVANA gene 121019111 121039242 3517.0 - 0 ENSG00000135114.12 protein_coding OASL 1 OTTHUMG00000154981.4 +19568 chr12 HAVANA gene 121053732 121059670 532.0 - 0 ENSG00000283542.1 unitary_pseudogene OASL2P 2 OTTHUMG00000191853.1 +19569 chr12 HAVANA gene 121079842 121080124 283.0 + 0 ENSG00000256963.1 processed_pseudogene AC079602.2 1 OTTHUMG00000169151.1 pseudo_consens +19570 chr12 HAVANA gene 121096027 121096429 403.0 - 0 ENSG00000279001.1 TEC AC079602.3 2 OTTHUMG00000169152.1 +19571 chr12 ENSEMBL gene 121107043 121107174 132.0 + 0 ENSG00000201945.1 snoRNA RF00156 3 +19572 chr12 HAVANA gene 121107220 121107490 271.0 + 0 ENSG00000223538.2 processed_pseudogene AC079602.1 2 OTTHUMG00000157802.2 +19573 chr12 HAVANA gene 121149010 121149109 100.0 + 0 ENSG00000257053.1 processed_pseudogene Z98941.1 2 OTTHUMG00000169154.1 overlapping_locus +19574 chr12 HAVANA gene 121132819 121188032 5546.0 + 0 ENSG00000089041.16 protein_coding P2RX7 2 OTTHUMG00000169153.5 overlapping_locus +19575 chr12 HAVANA gene 121190868 121191518 651.0 + 0 ENSG00000274029.1 lincRNA AC069209.1 2 OTTHUMG00000187263.1 +19576 chr12 HAVANA gene 121209857 121234106 8159.0 + 0 ENSG00000135124.14 protein_coding P2RX4 1 OTTHUMG00000169155.2 +19577 chr12 HAVANA gene 121237691 121298308 6931.0 - 0 ENSG00000110931.18 protein_coding CAMKK2 2 OTTHUMG00000169156.6 +19578 chr12 HAVANA gene 121391962 121399859 552.0 + 0 ENSG00000258435.1 lincRNA AC048337.1 2 OTTHUMG00000171523.1 +19579 chr12 HAVANA gene 121308245 121399896 12304.0 - 0 ENSG00000089053.12 protein_coding ANAPC5 1 OTTHUMG00000169157.3 +19580 chr12 HAVANA gene 121400041 121430623 4719.0 + 0 ENSG00000170633.16 protein_coding RNF34 1 OTTHUMG00000171524.4 +19581 chr12 ENSEMBL gene 121444273 121444352 80.0 - 0 ENSG00000284402.1 miRNA MIR7107 3 +19582 chr12 HAVANA gene 121429097 121581015 13623.0 - 0 ENSG00000089094.18 protein_coding KDM2B 1 OTTHUMG00000169071.4 ncRNA_host +19583 chr12 HAVANA gene 121580792 121593504 544.0 + 0 ENSG00000256742.1 lincRNA AC145422.1 2 OTTHUMG00000169072.1 +19584 chr12 ENSEMBL gene 121604902 121605012 111.0 + 0 ENSG00000252393.1 snRNA RNU6-1004P 3 +19585 chr12 HAVANA gene 121626550 121642677 2262.0 + 0 ENSG00000276045.3 protein_coding ORAI1 2 OTTHUMG00000169073.3 reference_genome_error +19586 chr12 HAVANA gene 121648742 121672631 3856.0 - 0 ENSG00000139714.12 protein_coding MORN3 2 OTTHUMG00000169075.2 +19587 chr12 HAVANA gene 121712752 121783001 8449.0 + 0 ENSG00000188735.12 protein_coding TMEM120B 2 OTTHUMG00000169076.1 +19588 chr12 HAVANA gene 121797511 121801972 572.0 + 0 ENSG00000272849.1 lincRNA AC084018.1 2 OTTHUMG00000185860.1 overlapping_locus +19589 chr12 HAVANA gene 121800797 121803403 2607.0 + 0 ENSG00000274292.1 lincRNA AC084018.2 2 OTTHUMG00000169079.2 overlapping_locus +19590 chr12 HAVANA gene 121777754 121803403 6181.0 - 0 ENSG00000139725.7 protein_coding RHOF 2 OTTHUMG00000169077.5 overlapping_locus +19591 chr12 HAVANA gene 121795267 121803906 4132.0 - 0 ENSG00000212694.8 lincRNA LINC01089 2 OTTHUMG00000128905.2 overlapping_locus +19592 chr12 HAVANA gene 121804180 121832584 8314.0 + 0 ENSG00000139718.10 protein_coding SETD1B 2 OTTHUMG00000169080.3 +19593 chr12 HAVANA gene 121856259 121857059 434.0 + 0 ENSG00000256811.1 antisense AC079360.1 2 OTTHUMG00000169082.1 +19594 chr12 HAVANA gene 121839527 121863596 2223.0 - 0 ENSG00000158104.11 protein_coding HPD 2 OTTHUMG00000169081.3 +19595 chr12 HAVANA gene 121874193 121874337 145.0 + 0 ENSG00000278084.1 lincRNA AC069503.3 2 OTTHUMG00000187268.1 +19596 chr12 ENSEMBL gene 121897583 121897826 244.0 - 0 ENSG00000283389.1 misc_RNA RF00017 3 +19597 chr12 ENSEMBL gene 121908103 121908163 61.0 + 0 ENSG00000239082.1 snRNA RNU7-170P 3 +19598 chr12 HAVANA gene 121888731 121918297 8774.0 + 0 ENSG00000110801.13 protein_coding PSMD9 1 OTTHUMG00000168945.4 ncRNA_host,overlapping_locus +19599 chr12 HAVANA gene 121888809 121921470 1831.0 + 0 ENSG00000256950.2 protein_coding AC069503.2 1 OTTHUMG00000168946.2 ncRNA_host,overlapping_locus +19600 chr12 HAVANA gene 121917862 122003927 16115.0 + 0 ENSG00000158023.9 protein_coding WDR66 1 OTTHUMG00000168948.1 overlapping_locus +19601 chr12 HAVANA gene 122007434 122020063 1143.0 - 0 ENSG00000255856.2 lincRNA AC069503.1 2 OTTHUMG00000168950.2 +19602 chr12 HAVANA gene 122019422 122062044 6565.0 + 0 ENSG00000110987.8 protein_coding BCL7A 1 OTTHUMG00000168951.2 +19603 chr12 HAVANA gene 122063306 122068616 1831.0 + 0 ENSG00000256546.1 processed_transcript AC156455.1 2 OTTHUMG00000168952.1 +19604 chr12 HAVANA gene 122078722 122147347 13905.0 + 0 ENSG00000175727.13 protein_coding MLXIP 1 OTTHUMG00000168953.4 +19605 chr12 HAVANA gene 122172030 122174199 904.0 - 0 ENSG00000204671.1 protein_coding IL31 2 OTTHUMG00000168916.1 +19606 chr12 HAVANA gene 122167738 122203471 2775.0 + 0 ENSG00000158113.12 protein_coding LRRC43 2 OTTHUMG00000168915.2 +19607 chr12 HAVANA gene 122203543 122208952 4690.0 + 0 ENSG00000176383.8 protein_coding B3GNT4 2 OTTHUMG00000168917.2 +19608 chr12 HAVANA gene 122207663 122226568 6774.0 - 0 ENSG00000184047.17 protein_coding DIABLO 1 OTTHUMG00000157014.9 overlapping_locus +19609 chr12 HAVANA gene 122207662 122227534 5967.0 - 0 ENSG00000284934.1 protein_coding DIABLO 2 OTTHUMG00000192412.2 overlapping_locus +19610 chr12 HAVANA gene 122207779 122266423 2748.0 - 0 ENSG00000256861.1 protein_coding AC048338.1 2 OTTHUMG00000192536.1 overlapping_locus +19611 chr12 HAVANA gene 122229564 122266521 7493.0 - 0 ENSG00000139719.10 protein_coding VPS33A 1 OTTHUMG00000168920.5 overlapping_locus +19612 chr12 HAVANA gene 122364782 122365632 476.0 + 0 ENSG00000214760.3 processed_pseudogene RPL21P1 1 OTTHUMG00000168926.2 pseudo_consens +19613 chr12 HAVANA gene 122395542 122400857 1809.0 + 0 ENSG00000257097.1 lincRNA CLIP1-AS1 2 OTTHUMG00000168927.1 +19614 chr12 HAVANA gene 122271432 122422632 16293.0 - 0 ENSG00000130779.20 protein_coding CLIP1 1 OTTHUMG00000168922.4 overlapping_locus +19615 chr12 ENSEMBL gene 122492113 122492241 129.0 - 0 ENSG00000252192.1 snoRNA RF00411 3 +19616 chr12 HAVANA gene 122471600 122501073 9124.0 - 0 ENSG00000033030.13 protein_coding ZCCHC8 2 OTTHUMG00000168878.4 ncRNA_host +19617 chr12 HAVANA gene 122501187 122501641 455.0 + 0 ENSG00000275265.1 lincRNA AC127002.1 2 OTTHUMG00000187270.1 +19618 chr12 HAVANA gene 122503458 122527000 8741.0 - 0 ENSG00000111011.17 protein_coding RSRC2 1 OTTHUMG00000167572.6 +19619 chr12 HAVANA gene 122563735 122563762 28.0 - 0 ENSG00000255972.1 processed_pseudogene AC026333.1 2 OTTHUMG00000168883.1 +19620 chr12 HAVANA gene 122527246 122626396 11325.0 + 0 ENSG00000184445.11 protein_coding KNTC1 1 OTTHUMG00000168861.6 +19621 chr12 HAVANA gene 122634130 122634673 544.0 + 0 ENSG00000274191.1 lincRNA AC026333.4 2 OTTHUMG00000187273.2 +19622 chr12 HAVANA gene 122701293 122703343 2051.0 - 0 ENSG00000182782.7 protein_coding HCAR2 2 OTTHUMG00000162722.1 +19623 chr12 HAVANA gene 122687125 122715979 2090.0 + 0 ENSG00000256249.1 lincRNA AC026333.3 2 OTTHUMG00000168862.1 +19624 chr12 HAVANA gene 122714756 122716892 2137.0 - 0 ENSG00000255398.2 protein_coding HCAR3 2 OTTHUMG00000166034.2 +19625 chr12 HAVANA gene 122726076 122730843 4768.0 - 0 ENSG00000196917.5 protein_coding HCAR1 2 OTTHUMG00000168863.2 +19626 chr12 HAVANA gene 122749481 122749586 106.0 - 0 ENSG00000256044.1 processed_pseudogene AC026333.2 2 OTTHUMG00000168864.1 +19627 chr12 ENSEMBL gene 122768099 122768200 102.0 + 0 ENSG00000206914.1 misc_RNA RF00019 3 +19628 chr12 HAVANA gene 122752774 122771064 3576.0 + 0 ENSG00000139726.10 protein_coding DENR 2 OTTHUMG00000168844.1 ncRNA_host +19629 chr12 HAVANA gene 122774327 122827528 4479.0 + 0 ENSG00000130783.13 protein_coding CCDC62 2 OTTHUMG00000168764.4 +19630 chr12 HAVANA gene 122834453 122862960 7102.0 + 0 ENSG00000130787.13 protein_coding HIP1R 2 OTTHUMG00000168765.1 +19631 chr12 HAVANA gene 122865335 122867021 484.0 + 0 ENSG00000256152.2 lincRNA AC027290.1 2 OTTHUMG00000168766.2 +19632 chr12 HAVANA gene 122870059 122888720 18662.0 - 0 ENSG00000280138.1 TEC AC027290.2 2 OTTHUMG00000168768.1 overlapping_locus +19633 chr12 HAVANA gene 122865328 122896444 5953.0 - 0 ENSG00000139722.6 protein_coding VPS37B 2 OTTHUMG00000168767.4 overlapping_locus +19634 chr12 HAVANA gene 122974580 122980043 4608.0 + 0 ENSG00000111325.16 protein_coding OGFOD2 1 OTTHUMG00000168778.2 overlapping_locus +19635 chr12 HAVANA gene 122920951 122981649 13291.0 - 0 ENSG00000150967.17 protein_coding ABCB9 1 OTTHUMG00000168769.6 +19636 chr12 HAVANA gene 122975320 122982907 5618.0 + 0 ENSG00000256028.2 processed_transcript AC026362.1 2 OTTHUMG00000168770.1 overlapping_locus +19637 chr12 HAVANA gene 122980060 122982913 2781.0 + 0 ENSG00000182196.13 protein_coding ARL6IP4 2 OTTHUMG00000168779.4 overlapping_locus +19638 chr12 ENSEMBL gene 123010667 123010728 62.0 - 0 ENSG00000265526.1 miRNA MIR4304 3 +19639 chr12 HAVANA gene 123081384 123084744 2289.0 + 0 ENSG00000251497.2 lincRNA PITPNM2-AS1 2 OTTHUMG00000168847.1 +19640 chr12 HAVANA gene 123087256 123092821 5566.0 - 0 ENSG00000280381.1 TEC AC026362.2 2 OTTHUMG00000168848.1 overlapping_locus +19641 chr12 HAVANA gene 122983480 123150015 9161.0 - 0 ENSG00000090975.12 protein_coding PITPNM2 2 OTTHUMG00000168845.4 ncRNA_host,overlapping_locus +19642 chr12 HAVANA gene 123152324 123153377 1054.0 - 0 ENSG00000280120.1 TEC AC073857.1 2 OTTHUMG00000168850.1 overlapping_locus +19643 chr12 HAVANA gene 123152320 123244014 10304.0 - 0 ENSG00000051825.14 protein_coding MPHOSPH9 1 OTTHUMG00000168849.8 overlapping_locus +19644 chr12 HAVANA gene 123232916 123257959 7090.0 + 0 ENSG00000130921.7 protein_coding C12orf65 2 OTTHUMG00000168852.2 +19645 chr12 HAVANA gene 123252030 123261483 1756.0 - 0 ENSG00000235423.8 antisense AC068768.1 2 OTTHUMG00000168853.3 overlapping_locus +19646 chr12 HAVANA gene 123262060 123262402 343.0 + 0 ENSG00000269980.1 antisense AC068768.2 2 OTTHUMG00000183986.1 +19647 chr12 HAVANA gene 123260971 123272334 3117.0 - 0 ENSG00000111328.6 protein_coding CDK2AP1 1 OTTHUMG00000168854.3 overlapping_locus +19648 chr12 ENSEMBL gene 123282916 123283034 119.0 - 0 ENSG00000199845.1 rRNA_pseudogene RNA5SP375 3 +19649 chr12 ENSEMBL gene 123348999 123349100 102.0 - 0 ENSG00000207189.1 misc_RNA RF00019 3 +19650 chr12 ENSEMBL gene 123364764 123364843 80.0 - 0 ENSG00000284425.1 miRNA MIR8072 3 +19651 chr12 HAVANA gene 123289109 123364843 11124.0 - 0 ENSG00000139697.13 protein_coding SBNO1 2 OTTHUMG00000183988.2 ncRNA_host +19652 chr12 HAVANA gene 123363868 123366113 2246.0 + 0 ENSG00000256092.2 lincRNA AC137767.1 2 OTTHUMG00000168679.2 +19653 chr12 HAVANA gene 123383773 123409358 4579.0 + 0 ENSG00000183955.12 protein_coding KMT5A 1 OTTHUMG00000150477.3 +19654 chr12 HAVANA gene 123410683 123436717 6141.0 - 0 ENSG00000150977.10 protein_coding RILPL2 2 OTTHUMG00000187294.1 +19655 chr12 HAVANA gene 123441517 123441852 336.0 - 0 ENSG00000270445.1 processed_pseudogene AC145423.1 1 OTTHUMG00000184772.1 pseudo_consens +19656 chr12 HAVANA gene 123457641 123473154 5140.0 + 0 ENSG00000184209.14 protein_coding SNRNP35 1 OTTHUMG00000167584.3 retrogene +19657 chr12 HAVANA gene 123515275 123515513 239.0 - 0 ENSG00000274427.1 sense_intronic AC145423.2 2 OTTHUMG00000187295.1 overlapping_locus +19658 chr12 HAVANA gene 123519390 123519856 467.0 - 0 ENSG00000278112.1 sense_intronic AC145423.3 2 OTTHUMG00000187296.1 overlapping_locus +19659 chr12 HAVANA gene 123470054 123533718 8670.0 - 0 ENSG00000188026.12 protein_coding RILPL1 1 OTTHUMG00000168686.3 +19660 chr12 ENSEMBL gene 123536409 123536534 126.0 + 0 ENSG00000266655.1 miRNA MIR3908 3 +19661 chr12 HAVANA gene 123575891 123585115 8279.0 - 0 ENSG00000247373.3 lincRNA AC055713.1 2 OTTHUMG00000168693.2 +19662 chr12 HAVANA gene 123584531 123598577 3830.0 + 0 ENSG00000086598.10 protein_coding TMED2 2 OTTHUMG00000168694.3 +19663 chr12 ENSEMBL gene 123616708 123616840 133.0 + 0 ENSG00000206897.1 snoRNA SNORA9B 3 +19664 chr12 HAVANA gene 123602077 123620941 5714.0 + 0 ENSG00000111364.15 protein_coding DDX55 2 OTTHUMG00000168695.2 ncRNA_host +19665 chr12 HAVANA gene 123620406 123633766 3627.0 - 0 ENSG00000111361.12 protein_coding EIF2B1 1 OTTHUMG00000168696.1 +19666 chr12 HAVANA gene 123649068 123650485 1418.0 + 0 ENSG00000279953.1 TEC AC117503.3 2 OTTHUMG00000168698.1 overlapping_locus +19667 chr12 HAVANA gene 123655528 123656128 601.0 + 0 ENSG00000278861.1 TEC AC117503.2 2 OTTHUMG00000168699.1 overlapping_locus +19668 chr12 HAVANA gene 123633739 123662606 3996.0 + 0 ENSG00000111358.13 protein_coding GTF2H3 2 OTTHUMG00000168697.3 overlapping_locus +19669 chr12 HAVANA gene 123707602 123708386 321.0 - 0 ENSG00000255839.1 lincRNA AC117503.1 2 OTTHUMG00000168722.1 +19670 chr12 HAVANA gene 123671113 123708403 5106.0 + 0 ENSG00000168778.11 protein_coding TCTN2 2 OTTHUMG00000168700.3 +19671 chr12 HAVANA gene 123721246 123721639 394.0 - 0 ENSG00000239215.1 processed_pseudogene RPL27P12 1 OTTHUMG00000157804.1 pseudo_consens +19672 chr12 HAVANA gene 123754246 123754794 549.0 - 0 ENSG00000280300.1 TEC AC117503.4 2 OTTHUMG00000168724.1 +19673 chr12 HAVANA gene 123712318 123761755 13729.0 + 0 ENSG00000185344.13 protein_coding ATP6V0A2 2 OTTHUMG00000168723.3 +19674 chr12 HAVANA gene 123925461 123934984 6003.0 - 0 ENSG00000250091.3 antisense DNAH10OS 1 OTTHUMG00000162010.5 overlapping_locus +19675 chr12 HAVANA gene 123762188 123936206 16720.0 + 0 ENSG00000197653.15 protein_coding DNAH10 1 OTTHUMG00000154477.6 +19676 chr12 HAVANA gene 123960717 123961244 528.0 - 0 ENSG00000270130.1 sense_intronic AC068790.7 2 OTTHUMG00000184034.1 overlapping_locus +19677 chr12 HAVANA gene 123962555 123962817 263.0 - 0 ENSG00000270048.1 sense_intronic AC068790.4 2 OTTHUMG00000184035.1 overlapping_locus +19678 chr12 HAVANA gene 123966077 123966629 553.0 - 0 ENSG00000269997.1 sense_intronic AC068790.3 2 OTTHUMG00000184036.1 overlapping_locus +19679 chr12 HAVANA gene 123968023 123968579 557.0 - 0 ENSG00000269938.1 sense_intronic AC068790.2 2 OTTHUMG00000184037.1 overlapping_locus +19680 chr12 HAVANA gene 123969990 123970344 355.0 - 0 ENSG00000270061.1 sense_intronic AC068790.5 2 OTTHUMG00000184038.1 overlapping_locus +19681 chr12 HAVANA gene 123971457 123971714 258.0 - 0 ENSG00000270095.1 sense_intronic AC068790.6 2 OTTHUMG00000184039.1 overlapping_locus +19682 chr12 HAVANA gene 123918660 123972831 8223.0 - 0 ENSG00000119242.8 protein_coding CCDC92 1 OTTHUMG00000168725.6 overlapping_locus +19683 chr12 HAVANA gene 124005871 124006225 355.0 - 0 ENSG00000256827.1 processed_pseudogene AC068790.1 1 OTTHUMG00000168599.1 pseudo_consens +19684 chr12 HAVANA gene 123971845 124015439 6340.0 + 0 ENSG00000179195.15 protein_coding ZNF664 2 OTTHUMG00000168596.2 overlapping_locus +19685 chr12 HAVANA gene 123973944 124088594 504.0 + 0 ENSG00000274874.1 protein_coding AC068790.8 2 OTTHUMG00000188242.1 overlapping_locus +19686 chr12 HAVANA gene 124085761 124088598 2838.0 + 0 ENSG00000275389.1 lincRNA AC068790.9 2 OTTHUMG00000188243.1 overlapping_locus +19687 chr12 HAVANA gene 124206228 124209018 2256.0 + 0 ENSG00000256596.1 lincRNA AC026358.1 2 OTTHUMG00000168607.1 overlapping_locus +19688 chr12 HAVANA gene 123973241 124316024 3173.0 + 0 ENSG00000178882.14 protein_coding RFLNA 2 OTTHUMG00000168609.5 overlapping_locus +19689 chr12 ENSEMBL gene 124337181 124337242 62.0 - 0 ENSG00000275967.1 miRNA MIR6880 3 +19690 chr12 HAVANA gene 124383381 124383510 130.0 + 0 ENSG00000255965.1 processed_pseudogene AC073916.1 2 OTTHUMG00000168614.1 +19691 chr12 HAVANA gene 124513222 124514813 1282.0 + 0 ENSG00000214650.2 lincRNA AC073592.1 2 OTTHUMG00000168623.1 +19692 chr12 HAVANA gene 124529722 124530228 507.0 - 0 ENSG00000279527.1 TEC AC073592.7 2 OTTHUMG00000168624.1 overlapping_locus +19693 chr12 HAVANA gene 124537844 124539677 1834.0 + 0 ENSG00000279071.1 TEC AC073592.3 2 OTTHUMG00000168625.1 +19694 chr12 HAVANA gene 124542503 124542873 371.0 + 0 ENSG00000280354.1 TEC AC073592.9 2 OTTHUMG00000168626.1 +19695 chr12 HAVANA gene 124555905 124556432 528.0 + 0 ENSG00000279121.1 TEC AC073592.5 2 OTTHUMG00000168627.1 +19696 chr12 HAVANA gene 124561869 124562283 415.0 + 0 ENSG00000279334.1 TEC AC073592.6 2 OTTHUMG00000168628.1 +19697 chr12 HAVANA gene 124324415 124567589 13975.0 - 0 ENSG00000196498.13 protein_coding NCOR2 1 OTTHUMG00000150455.3 ncRNA_host,overlapping_locus +19698 chr12 HAVANA gene 124593181 124593691 511.0 - 0 ENSG00000280097.1 TEC AC073592.8 2 OTTHUMG00000168629.1 +19699 chr12 HAVANA gene 124622290 124623069 780.0 - 0 ENSG00000278973.1 TEC AC073592.2 2 OTTHUMG00000168630.1 +19700 chr12 HAVANA gene 124623391 124623987 597.0 + 0 ENSG00000280444.1 TEC AC073592.10 2 OTTHUMG00000168631.1 +19701 chr12 HAVANA gene 124637999 124638444 446.0 - 0 ENSG00000279087.1 TEC AC073592.4 2 OTTHUMG00000168632.1 +19702 chr12 HAVANA gene 124725524 124725934 411.0 + 0 ENSG00000279931.1 TEC AC073593.1 2 OTTHUMG00000168543.1 +19703 chr12 HAVANA gene 124776856 124882668 7741.0 - 0 ENSG00000073060.15 protein_coding SCARB1 2 OTTHUMG00000168544.3 +19704 chr12 ENSEMBL gene 124901512 124901611 100.0 + 0 ENSG00000252008.1 snRNA RNU6-927P 3 +19705 chr12 ENSEMBL gene 124915547 124915659 113.0 + 0 ENSG00000265345.1 miRNA MIR5188 3 +19706 chr12 HAVANA gene 124911604 124917368 3898.0 - 0 ENSG00000150991.14 protein_coding UBC 1 OTTHUMG00000044421.5 +19707 chr12 HAVANA gene 124935455 124935895 441.0 - 0 ENSG00000241129.3 transcribed_processed_pseudogene RPL22P19 1 OTTHUMG00000157813.4 pseudo_consens +19708 chr12 HAVANA gene 124946825 124989122 6618.0 - 0 ENSG00000150990.7 protein_coding DHX37 2 OTTHUMG00000168547.2 +19709 chr12 HAVANA gene 125025434 125027410 1977.0 - 0 ENSG00000280634.1 antisense THRIL 2 OTTHUMG00000189748.1 +19710 chr12 HAVANA gene 124993700 125031231 6648.0 + 0 ENSG00000184992.10 protein_coding BRI3BP 2 OTTHUMG00000168548.2 +19711 chr12 HAVANA gene 125056359 125056581 223.0 - 0 ENSG00000256093.1 processed_pseudogene AC122688.1 1 OTTHUMG00000168549.1 pseudo_consens +19712 chr12 HAVANA gene 125138245 125141711 3467.0 + 0 ENSG00000279233.1 TEC AC122688.3 2 OTTHUMG00000168551.1 overlapping_locus +19713 chr12 HAVANA gene 125065379 125143333 16094.0 + 0 ENSG00000081760.16 protein_coding AACS 1 OTTHUMG00000168550.3 overlapping_locus +19714 chr12 HAVANA gene 125150058 125151394 585.0 + 0 ENSG00000256814.1 lincRNA AC122688.2 2 OTTHUMG00000168552.1 +19715 chr12 HAVANA gene 125160525 125164918 4394.0 + 0 ENSG00000280117.1 TEC AC122688.4 2 OTTHUMG00000168553.1 +19716 chr12 HAVANA gene 125300936 125301917 982.0 + 0 ENSG00000279462.1 TEC AC093028.1 2 OTTHUMG00000168521.1 overlapping_locus +19717 chr12 HAVANA gene 125186836 125662377 15703.0 + 0 ENSG00000139364.10 protein_coding TMEM132B 2 OTTHUMG00000168520.2 overlapping_locus +19718 chr12 HAVANA gene 125808668 125809808 1141.0 + 0 ENSG00000280125.1 TEC AC005252.2 2 OTTHUMG00000168490.1 +19719 chr12 HAVANA gene 125858862 125861119 2258.0 + 0 ENSG00000280415.1 TEC AC005252.3 2 OTTHUMG00000168491.1 +19720 chr12 HAVANA gene 125900421 125901483 1063.0 - 0 ENSG00000271184.1 processed_pseudogene AC005252.1 1 OTTHUMG00000184771.1 pseudo_consens +19721 chr12 HAVANA gene 125958688 125983374 6471.0 - 0 ENSG00000249267.6 lincRNA LINC00939 2 OTTHUMG00000168492.1 +19722 chr12 HAVANA gene 125983702 126043485 1815.0 + 0 ENSG00000275212.2 lincRNA AC005186.1 2 OTTHUMG00000168493.2 +19723 chr12 HAVANA gene 126106459 126107047 589.0 - 0 ENSG00000280364.1 TEC AC005858.2 2 OTTHUMG00000168497.1 +19724 chr12 HAVANA gene 126130166 126130865 700.0 - 0 ENSG00000280398.1 TEC AC005858.3 2 OTTHUMG00000168498.1 +19725 chr12 HAVANA gene 126141952 126142377 426.0 + 0 ENSG00000280272.1 TEC AC005858.1 2 OTTHUMG00000168499.1 +19726 chr12 HAVANA gene 126095992 126177632 6477.0 + 0 ENSG00000284848.1 lincRNA LINC02359 2 OTTHUMG00000168496.2 +19727 chr12 HAVANA gene 126400792 126405528 974.0 - 0 ENSG00000256494.1 lincRNA AC007368.2 2 OTTHUMG00000168467.1 +19728 chr12 HAVANA gene 126191151 126434227 5320.0 + 0 ENSG00000255595.3 processed_transcript AC007368.1 2 OTTHUMG00000168466.5 +19729 chr12 HAVANA gene 126458462 126458792 331.0 - 0 ENSG00000256125.1 processed_pseudogene AC005868.1 1 OTTHUMG00000168470.1 pseudo_consens +19730 chr12 HAVANA gene 126442481 126472790 2835.0 + 0 ENSG00000214043.7 lincRNA LINC02347 2 OTTHUMG00000168469.1 +19731 chr12 HAVANA gene 126510910 126511711 802.0 - 0 ENSG00000255853.1 processed_pseudogene AC006065.1 2 OTTHUMG00000168471.1 +19732 chr12 HAVANA gene 126524248 126524626 379.0 + 0 ENSG00000256310.1 processed_pseudogene NDUFA5P6 1 OTTHUMG00000168472.1 pseudo_consens +19733 chr12 HAVANA gene 126616344 126616554 211.0 - 0 ENSG00000255900.1 processed_pseudogene AC006065.2 1 OTTHUMG00000168474.1 pseudo_consens,overlapping_locus +19734 chr12 HAVANA gene 126675895 126676243 349.0 - 0 ENSG00000278866.1 TEC AC006065.5 2 OTTHUMG00000168476.1 overlapping_locus +19735 chr12 HAVANA gene 126677262 126677806 545.0 + 0 ENSG00000279171.1 TEC AC006065.6 2 OTTHUMG00000168477.1 +19736 chr12 HAVANA gene 126610034 126690318 1192.0 - 0 ENSG00000256732.1 lincRNA AC006065.4 2 OTTHUMG00000168473.1 overlapping_locus +19737 chr12 HAVANA gene 126628172 126690322 419.0 - 0 ENSG00000255944.1 lincRNA AC006065.3 2 OTTHUMG00000168475.1 overlapping_locus +19738 chr12 HAVANA gene 126690479 126695832 655.0 + 0 ENSG00000255998.1 lincRNA AC069235.1 2 OTTHUMG00000168478.1 +19739 chr12 HAVANA gene 126726270 126746252 3893.0 + 0 ENSG00000189238.5 lincRNA LINC00943 2 OTTHUMG00000168479.1 +19740 chr12 HAVANA gene 126729787 126772411 1853.0 - 0 ENSG00000256128.5 lincRNA LINC00944 2 OTTHUMG00000168480.1 +19741 chr12 HAVANA gene 126864465 126865422 958.0 + 0 ENSG00000255923.1 processed_pseudogene AC078878.1 2 OTTHUMG00000168452.1 +19742 chr12 HAVANA gene 126869490 126874690 1486.0 - 0 ENSG00000249873.6 lincRNA LINC02372 2 OTTHUMG00000168453.1 +19743 chr12 HAVANA gene 126874821 126876232 286.0 + 0 ENSG00000256286.1 lincRNA AC078878.2 2 OTTHUMG00000168454.1 +19744 chr12 HAVANA gene 126912034 126912322 289.0 + 0 ENSG00000257021.1 processed_pseudogene HSPE1P20 1 OTTHUMG00000168455.1 pseudo_consens +19745 chr12 HAVANA gene 126915203 127060401 1465.0 - 0 ENSG00000249345.6 lincRNA LINC02405 2 OTTHUMG00000168456.4 +19746 chr12 HAVANA gene 127145072 127146532 616.0 - 0 ENSG00000256001.1 lincRNA AC079949.1 2 OTTHUMG00000168461.1 +19747 chr12 HAVANA gene 127147149 127150081 2933.0 + 0 ENSG00000278266.1 lincRNA AC079949.2 2 OTTHUMG00000168462.2 +19748 chr12 HAVANA gene 127274467 127284283 724.0 - 0 ENSG00000256292.1 lincRNA LINC02376 2 OTTHUMG00000168443.1 +19749 chr12 HAVANA gene 127317709 127319986 912.0 - 0 ENSG00000256496.1 unprocessed_pseudogene AC073913.1 2 OTTHUMG00000168444.1 +19750 chr12 ENSEMBL gene 127321355 127321529 175.0 + 0 ENSG00000253089.1 snRNA RNU1-104P 3 +19751 chr12 HAVANA gene 127324155 127340072 852.0 - 0 ENSG00000256362.1 lincRNA LINC02375 2 OTTHUMG00000168445.1 +19752 chr12 HAVANA gene 127344258 127344402 145.0 - 0 ENSG00000256502.1 processed_pseudogene AC073913.2 2 OTTHUMG00000168446.1 +19753 chr12 HAVANA gene 127372243 127372669 427.0 + 0 ENSG00000280024.1 TEC AC048347.1 2 OTTHUMG00000168447.1 +19754 chr12 HAVANA gene 127462507 127463197 691.0 + 0 ENSG00000279952.1 TEC AC068787.1 2 OTTHUMG00000168448.1 +19755 chr12 HAVANA gene 127598168 127599715 556.0 + 0 ENSG00000255945.1 lincRNA AC025252.1 2 OTTHUMG00000168449.1 +19756 chr12 ENSEMBL gene 127619336 127619447 112.0 - 0 ENSG00000199584.1 misc_RNA RF00019 3 +19757 chr12 HAVANA gene 127624153 127626267 502.0 + 0 ENSG00000257035.1 unprocessed_pseudogene AC025252.2 2 OTTHUMG00000168450.1 +19758 chr12 HAVANA gene 127631248 127636467 1418.0 - 0 ENSG00000256022.5 lincRNA LINC02411 2 OTTHUMG00000168451.1 +19759 chr12 HAVANA gene 127793527 127821183 462.0 - 0 ENSG00000256922.1 lincRNA AC087894.2 2 OTTHUMG00000168421.1 +19760 chr12 HAVANA gene 127825938 127826286 349.0 - 0 ENSG00000279475.1 TEC AC087894.3 2 OTTHUMG00000168422.1 +19761 chr12 HAVANA gene 127876999 127877516 518.0 - 0 ENSG00000255757.1 processed_pseudogene AC087894.1 2 OTTHUMG00000168423.1 +19762 chr12 HAVANA gene 127881617 127898639 2311.0 + 0 ENSG00000256597.2 lincRNA LINC02393 2 OTTHUMG00000168424.2 +19763 chr12 HAVANA gene 127940595 127950160 194.0 - 0 ENSG00000256971.1 lincRNA LINC00508 2 OTTHUMG00000168426.1 +19764 chr12 HAVANA gene 127915372 127951552 2167.0 + 0 ENSG00000256193.5 lincRNA LINC00507 2 OTTHUMG00000168425.1 +19765 chr12 HAVANA gene 128023788 128027166 552.0 - 0 ENSG00000256643.1 lincRNA LINC02441 2 OTTHUMG00000168427.1 +19766 chr12 HAVANA gene 128086985 128118132 996.0 - 0 ENSG00000256551.1 lincRNA LINC02369 2 OTTHUMG00000168428.1 +19767 chr12 HAVANA gene 128118217 128121952 1656.0 + 0 ENSG00000256659.1 lincRNA LINC02368 2 OTTHUMG00000168429.1 +19768 chr12 HAVANA gene 128187934 128191389 622.0 - 0 ENSG00000276487.1 lincRNA AC061709.1 2 OTTHUMG00000187327.1 +19769 chr12 ENSEMBL gene 128244506 128244573 68.0 + 0 ENSG00000265061.1 miRNA MIR4419B 3 +19770 chr12 HAVANA gene 128288159 128289056 898.0 + 0 ENSG00000279180.1 TEC AC061709.2 2 OTTHUMG00000168412.1 overlapping_locus +19771 chr12 ENSEMBL gene 128294092 128294178 87.0 + 0 ENSG00000265635.1 miRNA MIR3612 3 +19772 chr12 HAVANA gene 128399978 128404814 564.0 + 0 ENSG00000257025.1 sense_intronic AC023595.1 2 OTTHUMG00000168414.1 overlapping_locus +19773 chr12 HAVANA gene 128437778 128439206 736.0 - 0 ENSG00000256630.1 unprocessed_pseudogene AC090424.1 1 OTTHUMG00000168436.1 pseudo_consens +19774 chr12 HAVANA gene 128267403 128707915 4947.0 + 0 ENSG00000181234.9 protein_coding TMEM132C 2 OTTHUMG00000163736.4 ncRNA_host,overlapping_locus +19775 chr12 HAVANA gene 128813186 128814750 1565.0 - 0 ENSG00000279500.1 TEC AC108704.2 2 OTTHUMG00000168417.1 overlapping_locus +19776 chr12 HAVANA gene 128793191 128823983 5496.0 - 0 ENSG00000139370.11 protein_coding SLC15A4 1 OTTHUMG00000168415.3 overlapping_locus +19777 chr12 HAVANA gene 128826836 128827579 744.0 + 0 ENSG00000274695.1 lincRNA AC108704.1 2 OTTHUMG00000187328.1 +19778 chr12 HAVANA gene 128944274 128945203 672.0 - 0 ENSG00000255838.1 unprocessed_pseudogene AC069262.1 1 OTTHUMG00000168438.1 pseudo_consens +19779 chr12 HAVANA gene 128853427 128984968 3478.0 + 0 ENSG00000151948.11 protein_coding GLT1D1 2 OTTHUMG00000168437.2 +19780 chr12 HAVANA gene 129013336 129016663 2655.0 + 0 ENSG00000256581.1 unprocessed_pseudogene NLRP9P1 1 OTTHUMG00000168439.1 pseudo_consens +19781 chr12 HAVANA gene 129109629 129113294 2271.0 + 0 ENSG00000249196.6 antisense TMEM132D-AS1 2 OTTHUMG00000168401.1 +19782 chr12 ENSEMBL gene 129170092 129170238 147.0 - 0 ENSG00000277217.1 misc_RNA RF02271 3 +19783 chr12 HAVANA gene 129208601 129212662 1568.0 + 0 ENSG00000256699.1 lincRNA TMEM132D-AS2 2 OTTHUMG00000168402.1 +19784 chr12 HAVANA gene 129262345 129262824 480.0 + 0 ENSG00000280051.1 TEC AC079456.1 2 OTTHUMG00000168403.1 +19785 chr12 HAVANA gene 129521303 129522763 739.0 - 0 ENSG00000256085.1 lincRNA AC130404.1 2 OTTHUMG00000168404.1 overlapping_locus +19786 chr12 HAVANA gene 129681427 129698227 392.0 - 0 ENSG00000256137.1 lincRNA AC117373.1 2 OTTHUMG00000168405.1 overlapping_locus +19787 chr12 HAVANA gene 129839928 129840522 595.0 - 0 ENSG00000280196.1 TEC AC055717.3 2 OTTHUMG00000168393.1 overlapping_locus +19788 chr12 HAVANA gene 129852208 129854944 1986.0 - 0 ENSG00000251536.2 lincRNA AC055717.1 2 OTTHUMG00000168394.1 overlapping_locus +19789 chr12 HAVANA gene 129071725 129903666 7075.0 - 0 ENSG00000151952.15 protein_coding TMEM132D 2 OTTHUMG00000168400.1 ncRNA_host,overlapping_locus +19790 chr12 HAVANA gene 130024493 130044956 577.0 - 0 ENSG00000261650.1 lincRNA AC055717.2 2 OTTHUMG00000168372.2 overlapping_locus +19791 chr12 HAVANA gene 130033454 130045057 4708.0 - 0 ENSG00000214039.8 lincRNA LINC02418 2 OTTHUMG00000168373.2 overlapping_locus +19792 chr12 HAVANA gene 130047132 130048376 353.0 + 0 ENSG00000256298.1 lincRNA AC135388.1 2 OTTHUMG00000168374.1 +19793 chr12 HAVANA gene 130070325 130072685 1713.0 + 0 ENSG00000256906.1 lincRNA LINC02419 2 OTTHUMG00000168375.1 +19794 chr12 HAVANA gene 130121925 130122974 1050.0 - 0 ENSG00000279193.1 TEC AC026336.4 2 OTTHUMG00000168376.1 +19795 chr12 HAVANA gene 130138693 130140768 2076.0 + 0 ENSG00000276122.1 lincRNA AC026336.3 2 OTTHUMG00000168377.1 +19796 chr12 HAVANA gene 130144954 130145691 738.0 + 0 ENSG00000280405.1 TEC AC026336.5 2 OTTHUMG00000168378.1 +19797 chr12 HAVANA gene 130144315 130162256 11498.0 - 0 ENSG00000250208.6 processed_transcript FZD10-DT 2 OTTHUMG00000168379.2 +19798 chr12 HAVANA gene 130162459 130165740 3282.0 + 0 ENSG00000111432.4 protein_coding FZD10 2 OTTHUMG00000168380.1 +19799 chr12 HAVANA gene 130216807 130217157 351.0 - 0 ENSG00000242963.1 processed_pseudogene AC026336.1 1 OTTHUMG00000157836.1 pseudo_consens +19800 chr12 HAVANA gene 130249679 130266725 763.0 + 0 ENSG00000259862.1 lincRNA AC026336.2 2 OTTHUMG00000168381.2 +19801 chr12 HAVANA gene 130350996 130351707 712.0 - 0 ENSG00000279343.1 TEC AC127071.1 2 OTTHUMG00000168383.1 +19802 chr12 HAVANA gene 130337887 130372637 5280.0 + 0 ENSG00000125207.7 protein_coding PIWIL1 1 OTTHUMG00000168382.3 +19803 chr12 HAVANA gene 130383364 130383890 527.0 + 0 ENSG00000279478.1 TEC AC127071.2 2 OTTHUMG00000168384.1 +19804 chr12 HAVANA gene 130419535 130421019 415.0 - 0 ENSG00000256064.1 lincRNA AC063926.1 2 OTTHUMG00000168386.1 overlapping_locus +19805 chr12 HAVANA gene 130425004 130430661 5658.0 + 0 ENSG00000279905.1 TEC AC063926.3 2 OTTHUMG00000168387.1 +19806 chr12 HAVANA gene 130465008 130466315 1308.0 - 0 ENSG00000279146.1 TEC AC063926.2 2 OTTHUMG00000168388.1 overlapping_locus +19807 chr12 HAVANA gene 130651371 130669233 2660.0 + 0 ENSG00000256343.7 lincRNA AC095350.1 2 OTTHUMG00000168322.4 +19808 chr12 HAVANA gene 130396137 130716281 9655.0 - 0 ENSG00000060709.15 protein_coding RIMBP2 1 OTTHUMG00000168385.3 +19809 chr12 HAVANA gene 130775694 130776546 853.0 - 0 ENSG00000279650.1 TEC AC073912.3 2 OTTHUMG00000168364.1 +19810 chr12 HAVANA gene 130810606 130812438 587.0 + 0 ENSG00000256250.1 lincRNA AC073912.1 2 OTTHUMG00000168323.1 +19811 chr12 HAVANA gene 130810821 130812622 317.0 - 0 ENSG00000256299.1 lincRNA AC073912.2 2 OTTHUMG00000168366.1 overlapping_locus +19812 chr12 HAVANA gene 130789600 130839266 3723.0 - 0 ENSG00000111450.13 protein_coding STX2 2 OTTHUMG00000168365.2 overlapping_locus +19813 chr12 ENSEMBL gene 130869736 130869837 102.0 - 0 ENSG00000222438.1 snRNA RNU6-1077P 3 +19814 chr12 HAVANA gene 130871879 130877678 4825.0 + 0 ENSG00000132341.11 protein_coding RAN 2 OTTHUMG00000134328.8 +19815 chr12 ENSEMBL gene 130906838 130906949 112.0 + 0 ENSG00000206850.1 misc_RNA RF00019 3 +19816 chr12 HAVANA gene 130956384 130958031 1648.0 - 0 ENSG00000279940.1 TEC AC073862.3 2 OTTHUMG00000168340.1 +19817 chr12 HAVANA gene 130962175 130963028 854.0 + 0 ENSG00000279976.1 TEC AC073862.4 2 OTTHUMG00000168341.1 overlapping_locus +19818 chr12 HAVANA gene 130977562 130978768 409.0 + 0 ENSG00000256204.1 lincRNA AC073862.1 2 OTTHUMG00000168343.1 overlapping_locus +19819 chr12 HAVANA gene 130976786 130978812 2027.0 + 0 ENSG00000280200.1 TEC AC073862.5 2 OTTHUMG00000168342.1 overlapping_locus +19820 chr12 HAVANA gene 130980667 130981367 701.0 - 0 ENSG00000279581.1 TEC AC073862.2 2 OTTHUMG00000168344.1 +19821 chr12 HAVANA gene 130988312 130990028 1717.0 - 0 ENSG00000280002.1 TEC AC078925.4 2 OTTHUMG00000168345.1 +19822 chr12 HAVANA gene 130990138 130993976 1277.0 - 0 ENSG00000256151.1 lincRNA ADGRD1-AS1 2 OTTHUMG00000168346.1 +19823 chr12 HAVANA gene 131022769 131024741 1973.0 - 0 ENSG00000279128.1 TEC AC078925.2 2 OTTHUMG00000168347.1 +19824 chr12 HAVANA gene 131025561 131028060 2500.0 - 0 ENSG00000279993.1 TEC AC078925.3 2 OTTHUMG00000168348.1 +19825 chr12 HAVANA gene 131030570 131035487 568.0 - 0 ENSG00000256810.1 lincRNA AC078925.1 2 OTTHUMG00000168349.1 +19826 chr12 HAVANA gene 130953907 131141469 14718.0 + 0 ENSG00000111452.12 protein_coding ADGRD1 1 OTTHUMG00000168339.4 overlapping_locus +19827 chr12 HAVANA gene 131165011 131212931 2562.0 + 0 ENSG00000204603.6 lincRNA LINC01257 2 OTTHUMG00000168350.1 +19828 chr12 HAVANA gene 131235511 131237523 2013.0 + 0 ENSG00000280217.1 TEC AC126564.1 2 OTTHUMG00000168351.1 +19829 chr12 HAVANA gene 131292068 131293176 1109.0 - 0 ENSG00000226356.2 unprocessed_pseudogene RPS6P20 1 OTTHUMG00000157842.1 pseudo_consens +19830 chr12 HAVANA gene 131296110 131297972 1315.0 - 0 ENSG00000248703.2 lincRNA LINC02415 2 OTTHUMG00000168300.1 +19831 chr12 HAVANA gene 131295522 131298218 2697.0 + 0 ENSG00000279746.1 TEC AC092850.1 2 OTTHUMG00000168299.1 +19832 chr12 ENSEMBL gene 131299640 131299751 112.0 - 0 ENSG00000212251.1 rRNA_pseudogene RNA5SP376 3 +19833 chr12 HAVANA gene 131347470 131367555 2009.0 + 0 ENSG00000230294.4 lincRNA LINC02370 2 OTTHUMG00000168301.2 overlapping_locus +19834 chr12 HAVANA gene 131366660 131371059 532.0 + 0 ENSG00000256484.1 lincRNA AC140118.1 2 OTTHUMG00000168302.1 overlapping_locus +19835 chr12 HAVANA gene 131436447 131436960 514.0 + 0 ENSG00000280319.1 TEC AC073578.4 2 OTTHUMG00000168303.1 +19836 chr12 HAVANA gene 131447337 131455436 464.0 - 0 ENSG00000275232.1 lincRNA AC073578.2 2 OTTHUMG00000187334.1 +19837 chr12 HAVANA gene 131478844 131483034 4191.0 - 0 ENSG00000279388.1 TEC AC073578.3 2 OTTHUMG00000168305.1 overlapping_locus +19838 chr12 HAVANA gene 131469311 131492951 493.0 - 0 ENSG00000256209.1 lincRNA AC073578.1 2 OTTHUMG00000168304.1 overlapping_locus +19839 chr12 HAVANA gene 131596857 131597115 259.0 - 0 ENSG00000255704.1 processed_pseudogene AC140063.1 2 OTTHUMG00000168306.1 +19840 chr12 HAVANA gene 131620178 131620765 588.0 - 0 ENSG00000279455.1 TEC AC117500.5 2 OTTHUMG00000168307.1 +19841 chr12 HAVANA gene 131621891 131623203 617.0 - 0 ENSG00000256258.1 lincRNA AC117500.3 2 OTTHUMG00000168308.1 +19842 chr12 HAVANA gene 131645918 131646444 527.0 + 0 ENSG00000279153.1 TEC AC117500.4 2 OTTHUMG00000168309.1 +19843 chr12 HAVANA gene 131647113 131648121 494.0 - 0 ENSG00000256424.1 lincRNA LINC02414 2 OTTHUMG00000168310.1 +19844 chr12 ENSEMBL gene 131661063 131661174 112.0 + 0 ENSG00000212154.1 rRNA_pseudogene RNA5SP377 3 +19845 chr12 HAVANA gene 131662596 131664704 1561.0 + 0 ENSG00000249926.2 lincRNA AC117500.1 2 OTTHUMG00000168311.1 +19846 chr12 HAVANA gene 131667492 131668246 755.0 + 0 ENSG00000243499.1 processed_pseudogene RPS6P21 1 OTTHUMG00000168312.1 pseudo_consens +19847 chr12 HAVANA gene 131756966 131758047 666.0 - 0 ENSG00000255933.1 lincRNA AC117500.2 2 OTTHUMG00000168313.1 +19848 chr12 HAVANA gene 131711081 131799737 10157.0 + 0 ENSG00000061936.9 protein_coding SFSWAP 1 OTTHUMG00000168319.3 +19849 chr12 ENSEMBL gene 131801315 131801434 120.0 - 0 ENSG00000200516.1 rRNA_pseudogene RNA5SP378 3 +19850 chr12 ENSEMBL gene 131815263 131815368 106.0 - 0 ENSG00000200483.1 snRNA RNU6-1017P 3 +19851 chr12 HAVANA gene 131828393 131851783 4003.0 + 0 ENSG00000198598.6 protein_coding MMP17 2 OTTHUMG00000168050.3 +19852 chr12 HAVANA gene 131857420 131864538 770.0 + 0 ENSG00000256955.2 lincRNA AC131009.2 2 OTTHUMG00000168051.2 +19853 chr12 HAVANA gene 131896500 131898239 1740.0 + 0 ENSG00000279283.1 TEC AC131009.4 2 OTTHUMG00000168248.1 overlapping_locus +19854 chr12 HAVANA gene 131894651 131923167 7608.0 + 0 ENSG00000177169.9 protein_coding ULK1 2 OTTHUMG00000168052.5 overlapping_locus +19855 chr12 HAVANA gene 131924736 131929351 426.0 - 0 ENSG00000255992.1 lincRNA AC131009.1 2 OTTHUMG00000168249.1 +19856 chr12 HAVANA gene 131934642 131934928 287.0 + 0 ENSG00000273568.1 sense_intronic AC131009.3 2 OTTHUMG00000187337.1 overlapping_locus +19857 chr12 HAVANA gene 131929200 131945896 5732.0 + 0 ENSG00000177192.13 protein_coding PUS1 1 OTTHUMG00000128507.7 overlapping_locus +19858 chr12 ENSEMBL gene 132031224 132031359 136.0 + 0 ENSG00000208892.1 snoRNA SNORA49 3 +19859 chr12 HAVANA gene 132077803 132080460 495.0 - 0 ENSG00000257000.1 antisense AC137590.1 2 OTTHUMG00000168250.1 +19860 chr12 HAVANA gene 131949920 132081102 18705.0 + 0 ENSG00000183495.13 protein_coding EP400 2 OTTHUMG00000187346.3 ncRNA_host +19861 chr12 HAVANA gene 132083540 132083779 240.0 - 0 ENSG00000274670.1 lincRNA AC137590.2 2 OTTHUMG00000187347.1 +19862 chr12 HAVANA gene 132100013 132100820 808.0 - 0 ENSG00000279640.1 TEC AC138466.5 2 OTTHUMG00000168252.1 +19863 chr12 HAVANA gene 132126461 132126764 304.0 - 0 ENSG00000256804.1 processed_pseudogene AC138466.2 1 OTTHUMG00000168253.1 pseudo_consens +19864 chr12 HAVANA gene 132084283 132131639 12647.0 + 0 ENSG00000185684.14 transcribed_unprocessed_pseudogene EP400P1 2 OTTHUMG00000168251.6 +19865 chr12 HAVANA gene 132136594 132144335 6365.0 - 0 ENSG00000185163.9 protein_coding DDX51 2 OTTHUMG00000168254.1 +19866 chr12 HAVANA gene 132144448 132152473 2029.0 + 0 ENSG00000184967.6 protein_coding NOC4L 1 OTTHUMG00000168260.4 +19867 chr12 HAVANA gene 132169823 132170043 221.0 + 0 ENSG00000276693.1 lincRNA AC138466.3 2 OTTHUMG00000187351.1 +19868 chr12 HAVANA gene 132186735 132189695 1484.0 - 0 ENSG00000256576.2 lincRNA LINC02361 2 OTTHUMG00000168255.2 +19869 chr12 HAVANA gene 132190213 132190997 391.0 + 0 ENSG00000256312.1 lincRNA AC138466.1 2 OTTHUMG00000168261.1 +19870 chr12 HAVANA gene 132200436 132201287 852.0 + 0 ENSG00000279480.1 TEC AC138466.4 2 OTTHUMG00000168257.1 +19871 chr12 HAVANA gene 132275391 132278329 1819.0 + 0 ENSG00000256943.1 antisense AC148477.3 2 OTTHUMG00000167981.1 overlapping_locus +19872 chr12 HAVANA gene 132279256 132280900 1645.0 - 0 ENSG00000278872.1 TEC AC148477.5 2 OTTHUMG00000167982.1 overlapping_locus +19873 chr12 HAVANA gene 132277349 132280900 3039.0 + 0 ENSG00000256542.2 antisense AC148477.2 2 OTTHUMG00000167958.3 overlapping_locus +19874 chr12 HAVANA gene 132282814 132284606 1793.0 + 0 ENSG00000277011.1 lincRNA AC148477.4 2 OTTHUMG00000167983.1 +19875 chr12 HAVANA gene 132196372 132329349 6969.0 - 0 ENSG00000182870.12 protein_coding GALNT9 2 OTTHUMG00000168256.6 overlapping_locus +19876 chr12 HAVANA gene 132329850 132331575 476.0 + 0 ENSG00000255916.1 antisense AC148477.1 1 OTTHUMG00000167984.1 +19877 chr12 HAVANA gene 132332005 132332432 428.0 + 0 ENSG00000279113.1 TEC AC148477.7 2 OTTHUMG00000167985.1 +19878 chr12 HAVANA gene 132351855 132352322 468.0 + 0 ENSG00000279704.1 TEC AC148477.8 2 OTTHUMG00000167986.1 +19879 chr12 HAVANA gene 132360734 132361198 465.0 + 0 ENSG00000279023.1 TEC AC148477.6 2 OTTHUMG00000167987.1 +19880 chr12 HAVANA gene 132362810 132363348 539.0 + 0 ENSG00000280150.1 TEC AC148477.9 2 OTTHUMG00000167988.1 +19881 chr12 HAVANA gene 132424504 132425208 705.0 - 0 ENSG00000274373.1 lincRNA AC148476.1 2 OTTHUMG00000187078.1 +19882 chr12 HAVANA gene 132457160 132460024 1035.0 + 0 ENSG00000256783.1 lincRNA AC079031.1 2 OTTHUMG00000167989.1 +19883 chr12 HAVANA gene 132462242 132462856 615.0 + 0 ENSG00000256875.2 lincRNA AC079031.2 2 OTTHUMG00000167990.2 +19884 chr12 HAVANA gene 132550729 132554947 4219.0 + 0 ENSG00000280287.1 TEC AC131212.3 2 OTTHUMG00000168042.1 overlapping_locus +19885 chr12 HAVANA gene 132565071 132566425 1355.0 + 0 ENSG00000279700.1 TEC AC131212.2 2 OTTHUMG00000168017.1 overlapping_locus +19886 chr12 ENSEMBL gene 132581997 132582061 65.0 + 0 ENSG00000277052.1 miRNA MIR6763 3 +19887 chr12 HAVANA gene 132489551 132585188 9311.0 + 0 ENSG00000112787.13 protein_coding FBRSL1 2 OTTHUMG00000167991.5 ncRNA_host,overlapping_locus +19888 chr12 HAVANA gene 132593031 132593698 668.0 - 0 ENSG00000277186.1 lincRNA AC131212.1 2 OTTHUMG00000187079.1 +19889 chr12 HAVANA gene 132603150 132610543 1817.0 - 0 ENSG00000204583.9 protein_coding LRCOL1 2 OTTHUMG00000168043.4 +19890 chr12 HAVANA gene 132618776 132622386 1973.0 + 0 ENSG00000187848.13 protein_coding P2RX2 2 OTTHUMG00000168018.4 +19891 chr12 HAVANA gene 132621999 132622973 975.0 - 0 ENSG00000280311.1 TEC AC131212.4 2 OTTHUMG00000168044.1 +19892 chr12 HAVANA gene 132623753 132687365 16609.0 - 0 ENSG00000177084.16 protein_coding POLE 1 OTTHUMG00000168045.5 +19893 chr12 HAVANA gene 132687606 132704991 1408.0 + 0 ENSG00000176894.9 protein_coding PXMP2 1 OTTHUMG00000168019.2 overlapping_locus +19894 chr12 HAVANA gene 132688049 132714912 567.0 + 0 ENSG00000256632.3 processed_transcript AC135586.2 2 OTTHUMG00000168020.2 overlapping_locus +19895 chr12 HAVANA gene 132710819 132722734 3952.0 + 0 ENSG00000247077.6 protein_coding PGAM5 1 OTTHUMG00000168021.2 overlapping_locus +19896 chr12 ENSEMBL gene 132723945 132724057 113.0 - 0 ENSG00000201469.1 rRNA_pseudogene RNA5SP379 3 +19897 chr12 HAVANA gene 132745156 132745729 574.0 + 0 ENSG00000256108.1 processed_pseudogene AC135586.1 1 OTTHUMG00000157850.4 pseudo_consens +19898 chr12 HAVANA gene 132725503 132761888 17517.0 - 0 ENSG00000176915.14 protein_coding ANKLE2 1 OTTHUMG00000168046.3 +19899 chr12 HAVANA gene 132825701 132826184 484.0 + 0 ENSG00000232888.4 processed_pseudogene RPS11P5 1 OTTHUMG00000168024.1 pseudo_consens +19900 chr12 HAVANA gene 132768909 132828858 10549.0 - 0 ENSG00000090615.14 protein_coding GOLGA3 2 OTTHUMG00000168023.6 overlapping_locus +19901 chr12 ENSEMBL gene 132835374 132835500 127.0 - 0 ENSG00000252079.1 snRNA RNU6-327P 3 +19902 chr12 HAVANA gene 132865855 132867958 2104.0 - 0 ENSG00000278949.1 TEC AC127070.4 2 OTTHUMG00000168025.1 overlapping_locus +19903 chr12 HAVANA gene 132887842 132888583 555.0 + 0 ENSG00000236617.2 antisense AC127070.1 2 OTTHUMG00000168026.1 +19904 chr12 HAVANA gene 132899984 132900368 385.0 + 0 ENSG00000255703.1 processed_pseudogene AC127070.3 1 OTTHUMG00000167932.1 pseudo_consens +19905 chr12 HAVANA gene 132911470 132914732 3263.0 + 0 ENSG00000250790.4 lincRNA AC127070.2 2 OTTHUMG00000167933.2 +19906 chr12 HAVANA gene 132822187 132956304 17127.0 - 0 ENSG00000072609.17 protein_coding CHFR 1 OTTHUMG00000167930.21 ncRNA_host,overlapping_locus +19907 chr12 HAVANA gene 132918308 132956306 10824.0 - 0 ENSG00000196458.10 protein_coding ZNF605 2 OTTHUMG00000167934.3 overlapping_locus +19908 chr12 HAVANA gene 132972338 132972890 553.0 - 0 ENSG00000256563.2 processed_pseudogene NANOGNBP2 1 OTTHUMG00000167935.2 pseudo_consens +19909 chr12 ENSEMBL gene 132995190 132995302 113.0 - 0 ENSG00000252269.1 snRNA RNU4ATAC12P 3 +19910 chr12 HAVANA gene 132986365 133032952 20863.0 + 0 ENSG00000198393.7 protein_coding ZNF26 1 OTTHUMG00000167936.5 +19911 chr12 HAVANA gene 133033503 133033956 454.0 + 0 ENSG00000255807.1 processed_pseudogene PTP4A1P2 1 OTTHUMG00000167938.1 pseudo_consens +19912 chr12 HAVANA gene 133030389 133037222 1301.0 - 0 ENSG00000246394.7 lincRNA AC073911.1 2 OTTHUMG00000167937.4 +19913 chr12 HAVANA gene 133037292 133063304 9520.0 + 0 ENSG00000198040.10 protein_coding ZNF84 1 OTTHUMG00000167939.6 +19914 chr12 HAVANA gene 133073516 133073983 468.0 - 0 ENSG00000279466.1 TEC AC073911.2 2 OTTHUMG00000167940.1 +19915 chr12 HAVANA gene 133077762 133078392 631.0 - 0 ENSG00000279817.1 TEC AC073911.3 2 OTTHUMG00000167941.1 +19916 chr12 HAVANA gene 133079838 133107544 5374.0 + 0 ENSG00000196387.9 protein_coding ZNF140 1 OTTHUMG00000167942.3 +19917 chr12 HAVANA gene 133115692 133122340 392.0 + 0 ENSG00000271963.1 antisense AC026786.2 2 OTTHUMG00000185828.1 +19918 chr12 HAVANA gene 133125479 133125952 474.0 + 0 ENSG00000240991.3 processed_pseudogene RPL23AP67 1 OTTHUMG00000157851.3 pseudo_consens +19919 chr12 HAVANA gene 133106817 133130473 15455.0 - 0 ENSG00000214029.4 protein_coding ZNF891 2 OTTHUMG00000167943.3 +19920 chr12 HAVANA gene 133130575 133159465 5541.0 + 0 ENSG00000256223.5 protein_coding ZNF10 1 OTTHUMG00000167944.3 overlapping_locus +19921 chr12 HAVANA gene 133130984 133202369 1374.0 + 0 ENSG00000256825.4 protein_coding AC026786.1 1 OTTHUMG00000167945.2 overlapping_locus +19922 chr12 HAVANA gene 133181409 133214831 14095.0 + 0 ENSG00000090612.20 protein_coding ZNF268 2 OTTHUMG00000167946.9 overlapping_locus +19923 chr12 HAVANA gene 133217210 133217675 466.0 - 0 ENSG00000255919.1 processed_pseudogene AC226150.1 2 OTTHUMG00000167948.2 +19924 chr12 HAVANA gene 133218312 133236095 3452.0 - 0 ENSG00000227059.6 protein_coding ANHX 1 OTTHUMG00000167949.1 +19925 chr12 ENSEMBL gene 133238335 133238438 104.0 - 0 ENSG00000239190.1 snRNA RNU6-717P 3 +19926 chr12 ENSEMBL gene 133238455 133238549 95.0 + 0 ENSG00000238443.1 misc_RNA RF00019 3 +19927 chr13 HAVANA gene 18174010 18178465 1229.0 - 0 ENSG00000279924.1 unprocessed_pseudogene AL356585.4 1 OTTHUMG00000189380.1 pseudo_consens +19928 chr13 HAVANA gene 18206570 18207466 897.0 - 0 ENSG00000279081.2 processed_pseudogene AL356585.1 1 OTTHUMG00000192039.1 pseudo_consens +19929 chr13 HAVANA gene 18195297 18232024 1970.0 + 0 ENSG00000279516.1 lincRNA FAM230C 2 OTTHUMG00000189381.1 +19930 chr13 HAVANA gene 18248913 18249035 123.0 - 0 ENSG00000284679.1 processed_pseudogene AL356585.10 2 OTTHUMG00000192342.1 +19931 chr13 HAVANA gene 18253526 18270822 1708.0 - 0 ENSG00000280208.1 unprocessed_pseudogene GGT4P 2 OTTHUMG00000189382.1 +19932 chr13 HAVANA gene 18297554 18298733 1180.0 + 0 ENSG00000279730.2 processed_pseudogene SETD8P1 1 OTTHUMG00000191380.1 pseudo_consens +19933 chr13 HAVANA gene 18279320 18309934 2396.0 - 0 ENSG00000279124.1 unprocessed_pseudogene AL356585.2 2 OTTHUMG00000189383.1 +19934 chr13 HAVANA gene 18331933 18348596 1017.0 + 0 ENSG00000279231.1 unprocessed_pseudogene AL356585.3 2 OTTHUMG00000189384.1 +19935 chr13 ENSEMBL gene 18418526 18418632 107.0 + 0 ENSG00000276183.1 snRNA RF00026 3 +19936 chr13 HAVANA gene 18408806 18431605 3447.0 + 0 ENSG00000268486.5 transcribed_unprocessed_pseudogene FO681491.1 1 OTTHUMG00000189311.2 pseudo_consens +19937 chr13 HAVANA gene 18467172 18485448 3140.0 - 0 ENSG00000215604.3 unprocessed_pseudogene ZNF962P 2 OTTHUMG00000016450.1 +19938 chr13 HAVANA gene 18491904 18492419 516.0 + 0 ENSG00000270496.1 processed_pseudogene BNIP3P7 1 OTTHUMG00000184738.1 pseudo_consens +19939 chr13 HAVANA gene 18540497 18550697 841.0 + 0 ENSG00000231238.1 lincRNA LINC00349 2 OTTHUMG00000016451.1 +19940 chr13 HAVANA gene 18609132 18609702 571.0 + 0 ENSG00000233905.1 processed_pseudogene LONRF2P2 2 OTTHUMG00000016457.1 +19941 chr13 HAVANA gene 18610298 18611675 663.0 - 0 ENSG00000229788.1 lincRNA LINC00388 2 OTTHUMG00000016452.1 +19942 chr13 HAVANA gene 18665235 18667221 1987.0 + 0 ENSG00000235876.2 processed_pseudogene FEM1AP4 1 OTTHUMG00000016453.1 pseudo_consens +19943 chr13 HAVANA gene 18672827 18676163 458.0 + 0 ENSG00000231914.1 lincRNA LINC00387 2 OTTHUMG00000016454.1 +19944 chr13 HAVANA gene 18680494 18681700 1207.0 + 0 ENSG00000226361.5 processed_pseudogene TERF1P5 1 OTTHUMG00000016455.1 pseudo_consens +19945 chr13 HAVANA gene 18697003 18697507 505.0 + 0 ENSG00000228797.2 processed_pseudogene FAM207BP 1 OTTHUMG00000016463.1 pseudo_consens +19946 chr13 HAVANA gene 18724415 18724904 490.0 - 0 ENSG00000230931.2 processed_pseudogene GXYLT1P1 1 OTTHUMG00000016459.2 pseudo_consens +19947 chr13 HAVANA gene 18726706 18727414 709.0 + 0 ENSG00000204718.3 processed_pseudogene CNN2P12 1 OTTHUMG00000016462.1 pseudo_consens +19948 chr13 HAVANA gene 18734080 18734896 817.0 + 0 ENSG00000227784.1 processed_pseudogene ZNF965P 2 OTTHUMG00000016464.1 +19949 chr13 HAVANA gene 18741730 18742718 481.0 - 0 ENSG00000244155.1 unprocessed_pseudogene CYP4F34P 2 OTTHUMG00000016466.1 +19950 chr13 HAVANA gene 18807279 18808018 740.0 - 0 ENSG00000227568.1 processed_pseudogene SNX18P26 1 OTTHUMG00000016467.1 pseudo_consens +19951 chr13 HAVANA gene 18809830 18810048 219.0 + 0 ENSG00000225016.1 processed_pseudogene LINC00328-2P 2 OTTHUMG00000016468.1 +19952 chr13 HAVANA gene 18837768 18838098 331.0 - 0 ENSG00000242756.2 processed_pseudogene RHOT1P3 1 OTTHUMG00000086705.1 pseudo_consens,overlapping_locus +19953 chr13 ENSEMBL gene 18869185 18869291 107.0 - 0 ENSG00000223024.1 snRNA RNU6-55P 3 +19954 chr13 HAVANA gene 18816718 18871967 2978.0 - 0 ENSG00000206192.7 unprocessed_pseudogene ANKRD20A9P 1 OTTHUMG00000016458.1 pseudo_consens,overlapping_locus +19955 chr13 ENSEMBL gene 18880054 18880157 104.0 + 0 ENSG00000206787.1 snRNA RNU6-76P 3 +19956 chr13 HAVANA gene 18892260 18895230 2971.0 - 0 ENSG00000235500.2 processed_pseudogene SNX19P2 1 OTTHUMG00000016471.1 pseudo_consens +19957 chr13 HAVANA gene 18905439 18907810 560.0 + 0 ENSG00000226250.1 lincRNA LINC00408 2 OTTHUMG00000016469.1 +19958 chr13 HAVANA gene 18921889 18944284 1083.0 - 0 ENSG00000231358.3 lincRNA AL355516.1 2 OTTHUMG00000016470.4 +19959 chr13 HAVANA gene 19008259 19012559 2178.0 + 0 ENSG00000232685.4 antisense LINC00442 2 OTTHUMG00000016475.3 +19960 chr13 HAVANA gene 19015487 19019336 779.0 - 0 ENSG00000229375.1 unprocessed_pseudogene USP24P1 2 OTTHUMG00000016474.1 overlapping_locus +19961 chr13 HAVANA gene 19027837 19028701 199.0 + 0 ENSG00000226619.1 antisense AL137001.1 2 OTTHUMG00000016476.1 +19962 chr13 HAVANA gene 19026001 19032626 494.0 - 0 ENSG00000187721.8 unprocessed_pseudogene GTF2IP3 2 OTTHUMG00000016473.1 overlapping_locus +19963 chr13 HAVANA gene 18946755 19062718 2865.0 - 0 ENSG00000226057.7 transcribed_unprocessed_pseudogene PHF2P2 2 OTTHUMG00000016472.3 overlapping_locus +19964 chr13 ENSEMBL gene 19088487 19088581 95.0 + 0 ENSG00000252287.1 rRNA_pseudogene RNA5SP24 3 +19965 chr13 HAVANA gene 19126399 19139611 902.0 + 0 ENSG00000224778.1 unprocessed_pseudogene CENPIP1 2 OTTHUMG00000016482.1 +19966 chr13 HAVANA gene 19151554 19152307 379.0 - 0 ENSG00000234894.1 unprocessed_pseudogene AL139327.3 2 OTTHUMG00000016479.1 +19967 chr13 HAVANA gene 19152567 19171194 1634.0 - 0 ENSG00000229147.1 unprocessed_pseudogene SMPD4P2 2 OTTHUMG00000016483.1 +19968 chr13 HAVANA gene 19172773 19172925 153.0 + 0 ENSG00000278337.1 unprocessed_pseudogene AL139327.4 2 OTTHUMG00000187786.1 +19969 chr13 HAVANA gene 19173770 19181852 1551.0 - 0 ENSG00000198033.11 protein_coding TUBA3C 2 OTTHUMG00000016481.2 +19970 chr13 HAVANA gene 19185225 19187349 348.0 + 0 ENSG00000121388.5 unprocessed_pseudogene AL139327.1 1 OTTHUMG00000016477.3 +19971 chr13 HAVANA gene 19201637 19227432 665.0 - 0 ENSG00000227879.2 unprocessed_pseudogene PSPC1P1 2 OTTHUMG00000016480.1 +19972 chr13 HAVANA gene 19262797 19263873 514.0 - 0 ENSG00000232243.1 lincRNA AL139327.2 2 OTTHUMG00000016478.1 +19973 chr13 HAVANA gene 19304593 19305625 1033.0 - 0 ENSG00000215349.2 processed_pseudogene MRPL3P1 1 OTTHUMG00000016485.1 pseudo_consens,overlapping_locus +19974 chr13 HAVANA gene 19290593 19344825 2748.0 - 0 ENSG00000237636.2 unprocessed_pseudogene ANKRD26P3 1 OTTHUMG00000016484.2 pseudo_consens,overlapping_locus +19975 chr13 HAVANA gene 19345049 19346749 1054.0 + 0 ENSG00000236834.1 lincRNA LINC00421 1 OTTHUMG00000016488.1 +19976 chr13 HAVANA gene 19382454 19383072 619.0 + 0 ENSG00000231184.3 processed_pseudogene CCNQP3 1 OTTHUMG00000016487.1 pseudo_consens,overlapping_locus +19977 chr13 HAVANA gene 19349137 19407962 3326.0 + 0 ENSG00000224976.2 unprocessed_pseudogene PARP4P2 1 OTTHUMG00000016486.2 pseudo_consens,overlapping_locus +19978 chr13 HAVANA gene 19408042 19409529 1059.0 - 0 ENSG00000229791.1 lincRNA AL356259.1 1 OTTHUMG00000016489.1 +19979 chr13 HAVANA gene 19411231 19416188 338.0 + 0 ENSG00000237164.1 unprocessed_pseudogene SLC25A15P2 2 OTTHUMG00000016490.1 +19980 chr13 HAVANA gene 19458398 19458718 321.0 - 0 ENSG00000223625.1 processed_pseudogene CYCSP32 1 OTTHUMG00000016492.1 pseudo_consens,overlapping_locus +19981 chr13 HAVANA gene 19422877 19536762 2287.0 - 0 ENSG00000132958.17 protein_coding TPTE2 2 OTTHUMG00000016493.3 overlapping_locus +19982 chr13 HAVANA gene 19560013 19561269 1257.0 - 0 ENSG00000215572.2 processed_pseudogene ESRRAP1 1 OTTHUMG00000016495.1 pseudo_consens,overlapping_locus +19983 chr13 HAVANA gene 19563589 19564900 1312.0 - 0 ENSG00000238132.2 processed_pseudogene CASC4P1 1 OTTHUMG00000016496.2 pseudo_consens,overlapping_locus +19984 chr13 HAVANA gene 19552571 19570288 518.0 - 0 ENSG00000232894.1 unprocessed_pseudogene MRPS31P2 1 OTTHUMG00000016494.1 pseudo_consens,overlapping_locus +19985 chr13 HAVANA gene 19561328 19588350 1112.0 + 0 ENSG00000225316.2 lincRNA LINC00350 2 OTTHUMG00000016497.2 +19986 chr13 HAVANA gene 19633681 19673459 4905.0 + 0 ENSG00000196199.13 protein_coding MPHOSPH8 2 OTTHUMG00000016498.3 +19987 chr13 HAVANA gene 19674624 19675884 376.0 + 0 ENSG00000226352.2 antisense PSPC1-AS2 2 OTTHUMG00000016499.2 +19988 chr13 ENSEMBL gene 19736975 19737254 280.0 - 0 ENSG00000275014.1 misc_RNA RN7SL166P 3 +19989 chr13 HAVANA gene 19674752 19783019 4817.0 - 0 ENSG00000121390.18 protein_coding PSPC1 2 OTTHUMG00000016502.7 ncRNA_host +19990 chr13 HAVANA gene 19818121 19818619 499.0 - 0 ENSG00000233469.1 processed_pseudogene ST6GALNAC4P1 1 OTTHUMG00000016501.1 pseudo_consens +19991 chr13 HAVANA gene 19841827 19843672 444.0 + 0 ENSG00000223576.2 antisense AL355001.1 2 OTTHUMG00000016503.2 +19992 chr13 HAVANA gene 19823482 19863636 3713.0 - 0 ENSG00000132950.18 protein_coding ZMYM5 2 OTTHUMG00000016504.5 +19993 chr13 HAVANA gene 19863858 19865048 1191.0 + 0 ENSG00000275964.1 lincRNA AL355001.2 2 OTTHUMG00000187050.1 +19994 chr13 HAVANA gene 20070250 20072136 803.0 - 0 ENSG00000237672.1 processed_pseudogene KRR1P1 2 OTTHUMG00000016505.1 +19995 chr13 HAVANA gene 19958670 20091829 13618.0 + 0 ENSG00000121741.16 protein_coding ZMYM2 1 OTTHUMG00000016507.9 +19996 chr13 HAVANA gene 20092632 20094144 1513.0 + 0 ENSG00000279951.1 TEC AL138688.2 2 OTTHUMG00000175960.1 +19997 chr13 HAVANA gene 20102701 20103230 431.0 + 0 ENSG00000236076.1 lincRNA LINC01072 2 OTTHUMG00000016506.1 +19998 chr13 HAVANA gene 20138255 20161049 5211.0 - 0 ENSG00000121743.3 protein_coding GJA3 2 OTTHUMG00000016510.3 +19999 chr13 HAVANA gene 20178978 20179462 485.0 - 0 ENSG00000226633.2 processed_pseudogene PPIAP28 1 OTTHUMG00000016508.1 pseudo_consens +20000 chr13 HAVANA gene 20181531 20181942 412.0 + 0 ENSG00000260131.1 antisense LINC00556 2 OTTHUMG00000175961.1 +20001 chr13 HAVANA gene 20187463 20193010 2546.0 - 0 ENSG00000165474.6 protein_coding GJB2 2 OTTHUMG00000016513.3 +20002 chr13 HAVANA gene 20194412 20196005 1594.0 + 0 ENSG00000279065.1 TEC AL138688.1 2 OTTHUMG00000175962.1 +20003 chr13 HAVANA gene 20221962 20232395 3300.0 - 0 ENSG00000121742.17 protein_coding GJB6 2 OTTHUMG00000016515.12 +20004 chr13 ENSEMBL gene 20433778 20433846 69.0 - 0 ENSG00000263978.1 miRNA MIR4499 3 +20005 chr13 HAVANA gene 20403666 20525873 4327.0 - 0 ENSG00000165475.14 protein_coding CRYL1 2 OTTHUMG00000016516.3 ncRNA_host +20006 chr13 HAVANA gene 20564708 20567045 787.0 - 0 ENSG00000277020.4 antisense AL590096.1 2 OTTHUMG00000187052.1 +20007 chr13 HAVANA gene 20607268 20608131 864.0 + 0 ENSG00000238286.1 processed_pseudogene SLC35E1P1 1 OTTHUMG00000016518.1 pseudo_consens,overlapping_locus +20008 chr13 ENSEMBL gene 20612161 20612338 178.0 + 0 ENSG00000222726.1 snRNA RNU2-7P 3 +20009 chr13 HAVANA gene 20567069 20691437 6111.0 + 0 ENSG00000032742.17 protein_coding IFT88 2 OTTHUMG00000016517.5 ncRNA_host,overlapping_locus +20010 chr13 HAVANA gene 20699307 20703718 4412.0 - 0 ENSG00000278291.1 antisense AL161772.1 2 OTTHUMG00000187101.2 +20011 chr13 HAVANA gene 20712431 20714146 1716.0 + 0 ENSG00000279135.1 TEC AL512652.2 2 OTTHUMG00000186834.1 overlapping_locus +20012 chr13 HAVANA gene 20702127 20723098 3327.0 + 0 ENSG00000172458.4 protein_coding IL17D 2 OTTHUMG00000016521.3 overlapping_locus +20013 chr13 HAVANA gene 20747035 20748057 713.0 - 0 ENSG00000233524.1 processed_pseudogene RANP8 1 OTTHUMG00000016520.1 pseudo_consens,overlapping_locus +20014 chr13 HAVANA gene 20768876 20769375 500.0 - 0 ENSG00000275485.1 sense_intronic AL512652.1 2 OTTHUMG00000187102.1 overlapping_locus +20015 chr13 HAVANA gene 20728731 20773958 1339.0 - 0 ENSG00000150456.10 protein_coding EEF1AKMT1 2 OTTHUMG00000016519.1 overlapping_locus +20016 chr13 HAVANA gene 20777329 20903048 10500.0 - 0 ENSG00000132953.16 protein_coding XPO4 2 OTTHUMG00000016528.2 +20017 chr13 HAVANA gene 20921664 20923233 1199.0 - 0 ENSG00000236704.1 processed_pseudogene CNOT4P1 1 OTTHUMG00000016522.1 pseudo_consens +20018 chr13 HAVANA gene 20938564 20949599 1624.0 - 0 ENSG00000233780.3 transcribed_processed_pseudogene HNRNPA1P30 1 OTTHUMG00000016523.2 pseudo_consens +20019 chr13 HAVANA gene 20956179 20956443 265.0 - 0 ENSG00000234363.1 processed_pseudogene PPIAP27 1 OTTHUMG00000016524.1 pseudo_consens +20020 chr13 HAVANA gene 20961310 20962195 886.0 + 0 ENSG00000213621.3 processed_pseudogene RPSAP54 1 OTTHUMG00000016525.1 pseudo_consens +20021 chr13 HAVANA gene 21005157 21018122 632.0 + 0 ENSG00000233851.1 antisense LATS2-AS1 2 OTTHUMG00000016527.1 +20022 chr13 ENSEMBL gene 21038529 21038667 139.0 - 0 ENSG00000201821.1 snRNA RNU4-9P 3 +20023 chr13 HAVANA gene 20973032 21061547 5578.0 - 0 ENSG00000150457.8 protein_coding LATS2 2 OTTHUMG00000016531.1 ncRNA_host +20024 chr13 HAVANA gene 21094315 21094714 400.0 - 0 ENSG00000180172.7 processed_pseudogene RPS12P23 1 OTTHUMG00000016529.2 pseudo_consens +20025 chr13 HAVANA gene 21103003 21104371 768.0 - 0 ENSG00000225585.1 processed_pseudogene IPPKP1 1 OTTHUMG00000016530.1 pseudo_consens +20026 chr13 ENSEMBL gene 21126271 21126396 126.0 - 0 ENSG00000275689.1 misc_RNA RF02116 3 +20027 chr13 ENSEMBL gene 21139886 21139957 72.0 - 0 ENSG00000252128.1 snoRNA RF00086 3 +20028 chr13 HAVANA gene 21140514 21149084 3396.0 + 0 ENSG00000150459.12 protein_coding SAP18 1 OTTHUMG00000016535.5 +20029 chr13 HAVANA gene 21153595 21176602 3048.0 - 0 ENSG00000165480.15 protein_coding SKA3 1 OTTHUMG00000016539.4 +20030 chr13 HAVANA gene 21176645 21179084 2246.0 + 0 ENSG00000173141.4 protein_coding MRPL57 2 OTTHUMG00000016532.2 +20031 chr13 HAVANA gene 21216555 21216660 106.0 + 0 ENSG00000271250.1 processed_pseudogene AL158032.1 1 OTTHUMG00000184855.1 pseudo_consens +20032 chr13 HAVANA gene 21234568 21235204 405.0 + 0 ENSG00000233405.1 lincRNA LINC01046 2 OTTHUMG00000016533.1 +20033 chr13 HAVANA gene 21287634 21287828 195.0 - 0 ENSG00000277077.1 unprocessed_pseudogene AL158032.2 2 OTTHUMG00000187790.1 +20034 chr13 HAVANA gene 21260015 21295003 3051.0 + 0 ENSG00000235438.7 transcribed_processed_pseudogene ESRRAP2 1 OTTHUMG00000016534.3 pseudo_consens,overlapping_locus +20035 chr13 HAVANA gene 21298139 21306373 617.0 + 0 ENSG00000233325.3 transcribed_unprocessed_pseudogene MIPEPP3 2 OTTHUMG00000016538.2 +20036 chr13 HAVANA gene 21319156 21320866 1711.0 + 0 ENSG00000215571.5 processed_pseudogene GRK6P1 1 OTTHUMG00000016540.1 pseudo_consens +20037 chr13 HAVANA gene 21303515 21348721 1859.0 - 0 ENSG00000224429.7 lincRNA LINC00539 2 OTTHUMG00000016541.3 +20038 chr13 HAVANA gene 21358373 21359314 942.0 + 0 ENSG00000235076.2 processed_pseudogene GAPDHP52 1 OTTHUMG00000016542.2 pseudo_consens +20039 chr13 ENSEMBL gene 21369790 21369899 110.0 - 0 ENSG00000222747.1 rRNA_pseudogene RNA5SP25 3 +20040 chr13 HAVANA gene 21376977 21377874 440.0 - 0 ENSG00000236953.1 sense_intronic ZDHHC20-IT1 1 OTTHUMG00000046192.1 overlapping_locus +20041 chr13 HAVANA gene 21372573 21459370 5574.0 - 0 ENSG00000180776.15 protein_coding ZDHHC20 2 OTTHUMG00000017410.2 overlapping_locus +20042 chr13 HAVANA gene 21483834 21484174 341.0 - 0 ENSG00000226908.1 processed_pseudogene HIST1H2BPS3 1 OTTHUMG00000016544.1 pseudo_consens +20043 chr13 HAVANA gene 21530690 21531323 634.0 + 0 ENSG00000230022.1 processed_pseudogene FNTAP2 1 OTTHUMG00000016545.1 pseudo_consens +20044 chr13 ENSEMBL gene 21551304 21551410 107.0 - 0 ENSG00000207518.1 snRNA RNU6-59P 3 +20045 chr13 HAVANA gene 21492691 21604214 3645.0 - 0 ENSG00000165487.13 protein_coding MICU2 2 OTTHUMG00000067414.8 ncRNA_host +20046 chr13 HAVANA gene 21628413 21629015 603.0 - 0 ENSG00000226525.5 processed_pseudogene RPS7P10 2 OTTHUMG00000016546.1 +20047 chr13 HAVANA gene 21671383 21704498 4539.0 + 0 ENSG00000102678.6 protein_coding FGF9 2 OTTHUMG00000017412.2 +20048 chr13 ENSEMBL gene 21790537 21790845 309.0 + 0 ENSG00000244197.3 misc_RNA RN7SL766P 3 +20049 chr13 HAVANA gene 21872770 21878160 680.0 - 0 ENSG00000226722.3 lincRNA LINC00424 2 OTTHUMG00000016547.3 +20050 chr13 HAVANA gene 22099163 22099544 382.0 - 0 ENSG00000237175.1 processed_pseudogene NME1P1 1 OTTHUMG00000016549.1 pseudo_consens +20051 chr13 HAVANA gene 22113119 22113338 220.0 - 0 ENSG00000226118.1 processed_pseudogene MTND3P1 2 OTTHUMG00000016548.1 +20052 chr13 HAVANA gene 22040975 22276524 2721.0 + 0 ENSG00000276476.2 lincRNA LINC00540 2 OTTHUMG00000187111.3 +20053 chr13 HAVANA gene 22696023 22696574 552.0 - 0 ENSG00000232187.1 processed_pseudogene FTH1P7 1 OTTHUMG00000016551.1 pseudo_consens +20054 chr13 HAVANA gene 22704739 22706206 1181.0 - 0 ENSG00000225777.1 processed_pseudogene DDX39AP1 1 OTTHUMG00000016550.1 pseudo_consens +20055 chr13 ENSEMBL gene 22803145 22803224 80.0 + 0 ENSG00000253094.1 snoRNA RF00049 3 +20056 chr13 HAVANA gene 22803296 22803648 353.0 + 0 ENSG00000237952.1 processed_pseudogene RPL7AP73 2 OTTHUMG00000016552.1 +20057 chr13 HAVANA gene 22837026 22837880 855.0 - 0 ENSG00000226507.1 processed_pseudogene IPMKP1 1 OTTHUMG00000016553.1 pseudo_consens +20058 chr13 HAVANA gene 22850101 22850561 461.0 + 0 ENSG00000231650.1 processed_pseudogene RFESDP1 1 OTTHUMG00000016554.1 pseudo_consens +20059 chr13 HAVANA gene 22897341 22898005 665.0 - 0 ENSG00000230535.1 processed_pseudogene BASP1P1 2 OTTHUMG00000016557.1 overlapping_locus +20060 chr13 HAVANA gene 22894656 22916369 1177.0 - 0 ENSG00000262619.1 lincRNA LINC00621 2 OTTHUMG00000177835.1 overlapping_locus +20061 chr13 HAVANA gene 22915651 22916523 873.0 + 0 ENSG00000234685.1 processed_pseudogene NUS1P2 1 OTTHUMG00000016556.3 pseudo_consens +20062 chr13 HAVANA gene 22918591 22924602 585.0 + 0 ENSG00000262198.1 lincRNA AL157931.1 2 OTTHUMG00000177836.1 +20063 chr13 HAVANA gene 22931537 22931999 463.0 + 0 ENSG00000283075.1 lincRNA AL157931.2 2 OTTHUMG00000191514.1 +20064 chr13 HAVANA gene 23134174 23134564 391.0 + 0 ENSG00000233440.2 processed_pseudogene HMGA1P6 2 OTTHUMG00000016558.2 +20065 chr13 ENSEMBL gene 23152586 23152686 101.0 - 0 ENSG00000207157.1 misc_RNA RNY3P4 3 +20066 chr13 HAVANA gene 23169835 23170597 264.0 - 0 ENSG00000229483.2 lincRNA LINC00362 2 OTTHUMG00000016559.2 +20067 chr13 ENSEMBL gene 23217432 23217534 103.0 - 0 ENSG00000252952.1 snRNA RNU6-58P 3 +20068 chr13 HAVANA gene 23243520 23247184 3665.0 + 0 ENSG00000235205.1 processed_pseudogene TATDN2P3 1 OTTHUMG00000016560.1 pseudo_consens,overlapping_locus +20069 chr13 HAVANA gene 23267506 23269150 1645.0 + 0 ENSG00000236803.1 processed_pseudogene SDAD1P4 1 OTTHUMG00000016561.1 pseudo_consens,overlapping_locus +20070 chr13 HAVANA gene 23180952 23325165 1624.0 + 0 ENSG00000102683.7 protein_coding SGCG 2 OTTHUMG00000016563.1 overlapping_locus +20071 chr13 HAVANA gene 23373423 23374061 299.0 + 0 ENSG00000232163.2 processed_pseudogene RPLP1P13 2 OTTHUMG00000016564.2 +20072 chr13 HAVANA gene 23418971 23428869 2234.0 + 0 ENSG00000229558.2 lincRNA SACS-AS1 2 OTTHUMG00000016565.2 +20073 chr13 HAVANA gene 23328826 23433740 15918.0 - 0 ENSG00000151835.15 protein_coding SACS 1 OTTHUMG00000016562.5 +20074 chr13 HAVANA gene 23466571 23487464 3266.0 + 0 ENSG00000232977.6 lincRNA LINC00327 1 OTTHUMG00000016566.2 +20075 chr13 HAVANA gene 23498796 23502874 552.0 + 0 ENSG00000227893.1 lincRNA LINC00352 2 OTTHUMG00000016567.1 +20076 chr13 HAVANA gene 23570370 23676104 5113.0 + 0 ENSG00000127863.15 protein_coding TNFRSF19 2 OTTHUMG00000016568.3 +20077 chr13 HAVANA gene 23765934 23766104 171.0 - 0 ENSG00000232102.1 processed_pseudogene MTCO3P2 2 OTTHUMG00000016569.1 overlapping_locus +20078 chr13 HAVANA gene 23730189 23889419 3407.0 - 0 ENSG00000027001.9 protein_coding MIPEP 2 OTTHUMG00000016573.2 overlapping_locus +20079 chr13 HAVANA gene 23888889 23897263 1200.0 + 0 ENSG00000205861.11 processed_transcript PCOTH 2 OTTHUMG00000016571.2 +20080 chr13 HAVANA gene 23890525 23902655 2196.0 - 0 ENSG00000205863.10 protein_coding C1QTNF9B 2 OTTHUMG00000016570.5 +20081 chr13 HAVANA gene 23939557 23946782 2796.0 - 0 ENSG00000196593.9 transcribed_unprocessed_pseudogene ANKRD20A19P 2 OTTHUMG00000016572.3 +20082 chr13 HAVANA gene 23979810 24035027 1721.0 + 0 ENSG00000228741.2 lincRNA SPATA13 2 OTTHUMG00000016574.2 overlapping_locus +20083 chr13 HAVANA gene 24122065 24123814 1750.0 - 0 ENSG00000225674.1 processed_pseudogene IPO7P2 1 OTTHUMG00000016575.1 pseudo_consens +20084 chr13 ENSEMBL gene 24162416 24162504 89.0 + 0 ENSG00000252695.1 miRNA MIR2276 3 +20085 chr13 HAVANA gene 24252749 24254439 433.0 - 0 ENSG00000227213.1 antisense SPATA13-AS1 1 OTTHUMG00000016580.1 +20086 chr13 HAVANA gene 23979805 24307074 9948.0 + 0 ENSG00000182957.15 protein_coding SPATA13 1 OTTHUMG00000016578.12 ncRNA_host,overlapping_locus +20087 chr13 HAVANA gene 23979700 24321031 4157.0 + 0 ENSG00000273167.1 protein_coding AL359736.1 2 OTTHUMG00000186016.1 ncRNA_host,overlapping_locus +20088 chr13 HAVANA gene 24315725 24321598 470.0 - 0 ENSG00000240868.1 antisense C1QTNF9-AS1 1 OTTHUMG00000016579.1 +20089 chr13 HAVANA gene 24307166 24322535 1893.0 + 0 ENSG00000240654.6 protein_coding C1QTNF9 2 OTTHUMG00000016576.2 overlapping_locus +20090 chr13 HAVANA gene 24323021 24323457 437.0 + 0 ENSG00000277040.1 processed_pseudogene AL359736.2 2 OTTHUMG00000187793.1 +20091 chr13 HAVANA gene 24328211 24329072 862.0 + 0 ENSG00000234627.3 processed_pseudogene NUS1P3 1 OTTHUMG00000016577.1 pseudo_consens +20092 chr13 HAVANA gene 24331450 24337121 570.0 + 0 ENSG00000261498.1 lincRNA LINC00566 2 OTTHUMG00000175964.1 +20093 chr13 HAVANA gene 24400703 24401029 327.0 + 0 ENSG00000233545.1 processed_pseudogene CYCSP33 1 OTTHUMG00000016581.3 pseudo_consens +20094 chr13 HAVANA gene 24420926 24512810 6080.0 - 0 ENSG00000102699.5 protein_coding PARP4 2 OTTHUMG00000016582.3 +20095 chr13 HAVANA gene 24566843 24570728 225.0 + 0 ENSG00000244615.1 transcribed_unprocessed_pseudogene PSPC1P2 2 OTTHUMG00000016585.1 overlapping_locus +20096 chr13 HAVANA gene 24566873 24597676 1710.0 + 0 ENSG00000243008.2 processed_transcript AL359538.1 2 OTTHUMG00000186395.1 overlapping_locus +20097 chr13 HAVANA gene 24408157 24597676 1816.0 + 0 ENSG00000205822.10 transcribed_unprocessed_pseudogene TPTE2P6 1 OTTHUMG00000016586.1 pseudo_consens,overlapping_locus +20098 chr13 HAVANA gene 24611966 24613983 313.0 + 0 ENSG00000285228.1 unitary_pseudogene AL359538.2 2 OTTHUMG00000192560.1 +20099 chr13 ENSEMBL gene 24703556 24703665 110.0 - 0 ENSG00000207474.1 misc_RNA RNY1P7 3 +20100 chr13 HAVANA gene 24704338 24704788 451.0 - 0 ENSG00000225404.2 processed_pseudogene RPL26P34 1 OTTHUMG00000016587.2 pseudo_consens +20101 chr13 HAVANA gene 24680411 24712493 4442.0 + 0 ENSG00000075673.11 protein_coding ATP12A 2 OTTHUMG00000016588.2 +20102 chr13 HAVANA gene 24723101 24738690 909.0 - 0 ENSG00000285806.1 lincRNA AL391560.1 2 OTTHUMG00000193019.1 +20103 chr13 HAVANA gene 24742677 24746184 1838.0 + 0 ENSG00000231417.2 unprocessed_pseudogene IRX1P1 1 OTTHUMG00000016590.2 pseudo_consens +20104 chr13 HAVANA gene 24750657 24752171 1515.0 - 0 ENSG00000226695.1 processed_pseudogene ANKRD20A10P 1 OTTHUMG00000016591.1 pseudo_consens +20105 chr13 HAVANA gene 24764152 24879921 5634.0 + 0 ENSG00000132972.18 protein_coding RNF17 1 OTTHUMG00000016589.5 +20106 chr13 HAVANA gene 24882284 24922889 5812.0 - 0 ENSG00000151849.14 protein_coding CENPJ 2 OTTHUMG00000016595.1 +20107 chr13 HAVANA gene 24933006 24936796 329.0 + 0 ENSG00000273628.1 unprocessed_pseudogene AL354798.1 2 OTTHUMG00000187794.1 +20108 chr13 HAVANA gene 24943575 24944498 290.0 + 0 ENSG00000251299.1 unprocessed_pseudogene SLC25A15P3 2 OTTHUMG00000016593.1 +20109 chr13 HAVANA gene 24924677 24968487 1709.0 - 0 ENSG00000253771.6 transcribed_unprocessed_pseudogene TPTE2P1 2 OTTHUMG00000016596.3 +20110 chr13 HAVANA gene 24988577 24988925 349.0 - 0 ENSG00000232858.1 processed_pseudogene RPL34P27 1 OTTHUMG00000016594.1 pseudo_consens +20111 chr13 HAVANA gene 25017404 25017536 133.0 + 0 ENSG00000269099.2 processed_pseudogene LSP1P1 1 OTTHUMG00000186973.1 pseudo_consens +20112 chr13 HAVANA gene 25017766 25017903 138.0 - 0 ENSG00000276958.1 unprocessed_pseudogene AL590099.1 2 OTTHUMG00000187795.1 +20113 chr13 HAVANA gene 25095868 25099254 3387.0 + 0 ENSG00000151846.8 protein_coding PABPC3 2 OTTHUMG00000016601.5 retrogene +20114 chr13 HAVANA gene 25141536 25141809 274.0 + 0 ENSG00000279695.1 TEC AL359757.2 2 OTTHUMG00000186835.1 +20115 chr13 HAVANA gene 25161684 25172288 10605.0 - 0 ENSG00000165566.12 protein_coding AMER2 2 OTTHUMG00000016602.3 +20116 chr13 HAVANA gene 25172828 25180079 1147.0 - 0 ENSG00000234056.1 lincRNA LINC00463 2 OTTHUMG00000016604.1 +20117 chr13 HAVANA gene 25181441 25189760 771.0 + 0 ENSG00000238169.1 antisense LINC01053 2 OTTHUMG00000016605.1 +20118 chr13 HAVANA gene 25190063 25190317 255.0 - 0 ENSG00000279550.1 TEC AL359757.1 2 OTTHUMG00000175967.1 +20119 chr13 HAVANA gene 25206049 25206506 458.0 + 0 ENSG00000235315.2 processed_pseudogene RPL23AP69 1 OTTHUMG00000016600.2 pseudo_consens +20120 chr13 HAVANA gene 25193107 25210295 302.0 - 0 ENSG00000225105.2 lincRNA LINC01076 1 OTTHUMG00000016599.2 +20121 chr13 HAVANA gene 25246201 25288009 5779.0 - 0 ENSG00000139505.11 protein_coding MTMR6 2 OTTHUMG00000016606.1 +20122 chr13 HAVANA gene 25300124 25301438 1315.0 - 0 ENSG00000260509.2 lincRNA AL590787.1 2 OTTHUMG00000175969.2 +20123 chr13 HAVANA gene 25301524 25349800 10422.0 + 0 ENSG00000139496.15 protein_coding NUP58 2 OTTHUMG00000016608.5 +20124 chr13 HAVANA gene 25365799 25366155 357.0 - 0 ENSG00000234152.1 processed_pseudogene ELOBP1 1 OTTHUMG00000016607.1 pseudo_consens +20125 chr13 ENSEMBL gene 25517119 25517225 107.0 + 0 ENSG00000199767.1 snRNA RNU6-78P 3 +20126 chr13 HAVANA gene 25863250 25863667 418.0 - 0 ENSG00000180803.3 processed_pseudogene AL157366.1 2 OTTHUMG00000016609.1 +20127 chr13 ENSEMBL gene 25944478 25944766 289.0 + 0 ENSG00000242381.3 misc_RNA RN7SL741P 3 +20128 chr13 ENSEMBL gene 25950704 25950821 118.0 - 0 ENSG00000223158.1 misc_RNA RNY1P3 3 +20129 chr13 HAVANA gene 25372071 26025851 10415.0 + 0 ENSG00000132932.16 protein_coding ATP8A2 2 OTTHUMG00000016611.5 ncRNA_host +20130 chr13 HAVANA gene 26044597 26051031 2860.0 - 0 ENSG00000180730.4 protein_coding SHISA2 2 OTTHUMG00000016612.2 +20131 chr13 HAVANA gene 26052276 26053385 435.0 - 0 ENSG00000231983.1 lincRNA LINC00415 2 OTTHUMG00000016610.1 +20132 chr13 HAVANA gene 26117548 26118964 705.0 - 0 ENSG00000234706.1 processed_pseudogene PRUNEP1 1 OTTHUMG00000016615.1 pseudo_consens,overlapping_locus +20133 chr13 HAVANA gene 26094724 26154175 1536.0 - 0 ENSG00000233963.2 unprocessed_pseudogene ATP8A2P3 1 OTTHUMG00000016613.2 pseudo_consens,overlapping_locus +20134 chr13 HAVANA gene 26132115 26222493 4621.0 - 0 ENSG00000127870.16 protein_coding RNF6 2 OTTHUMG00000016614.4 overlapping_locus +20135 chr13 HAVANA gene 26222191 26222654 464.0 + 0 ENSG00000277368.1 antisense AL138966.2 2 OTTHUMG00000188838.1 +20136 chr13 HAVANA gene 26229332 26229644 313.0 - 0 ENSG00000271559.1 processed_pseudogene AL138966.1 1 OTTHUMG00000184713.1 pseudo_consens +20137 chr13 HAVANA gene 26234213 26237129 2310.0 + 0 ENSG00000227882.1 processed_pseudogene THAP12P6 1 OTTHUMG00000016616.1 pseudo_consens +20138 chr13 ENSEMBL gene 26359529 26359702 174.0 - 0 ENSG00000278413.1 misc_RNA RF02271 3 +20139 chr13 HAVANA gene 26254104 26405238 3538.0 + 0 ENSG00000132964.11 protein_coding CDK8 2 OTTHUMG00000016617.4 +20140 chr13 HAVANA gene 26488952 26496120 2207.0 + 0 ENSG00000285929.1 lincRNA AL353789.1 2 OTTHUMG00000192704.1 +20141 chr13 HAVANA gene 26576886 26577675 790.0 + 0 ENSG00000234031.1 processed_pseudogene RPS3AP44 1 OTTHUMG00000016618.1 pseudo_consens,overlapping_locus +20142 chr13 HAVANA gene 26606544 26641364 3040.0 - 0 ENSG00000237001.6 antisense WASF3-AS1 1 OTTHUMG00000016619.3 +20143 chr13 HAVANA gene 26557703 26688948 5162.0 + 0 ENSG00000132970.12 protein_coding WASF3 2 OTTHUMG00000016621.1 overlapping_locus +20144 chr13 HAVANA gene 26685640 26698804 2593.0 - 0 ENSG00000285935.1 antisense AL159978.1 2 OTTHUMG00000192659.1 +20145 chr13 HAVANA gene 26755200 26760785 5298.0 - 0 ENSG00000132975.7 protein_coding GPR12 2 OTTHUMG00000016620.3 +20146 chr13 HAVANA gene 26905362 26905861 500.0 + 0 ENSG00000230256.1 processed_pseudogene FGFR1OP2P1 1 OTTHUMG00000016622.1 pseudo_consens +20147 chr13 HAVANA gene 26977543 26977789 247.0 + 0 ENSG00000223782.1 processed_pseudogene RPS21P8 1 OTTHUMG00000016623.1 pseudo_consens +20148 chr13 HAVANA gene 26965967 26991996 576.0 - 0 ENSG00000283579.1 lincRNA AL160035.1 2 OTTHUMG00000191627.1 +20149 chr13 HAVANA gene 27017554 27017909 356.0 - 0 ENSG00000218198.3 processed_pseudogene RPS20P32 1 OTTHUMG00000016624.1 pseudo_consens +20150 chr13 HAVANA gene 27077218 27077962 745.0 + 0 ENSG00000278496.1 unprocessed_pseudogene AL158062.1 1 OTTHUMG00000187796.1 pseudo_consens +20151 chr13 HAVANA gene 27162855 27169135 268.0 + 0 ENSG00000232162.1 antisense USP12-AS1 2 OTTHUMG00000016625.1 +20152 chr13 HAVANA gene 27066142 27171896 5195.0 - 0 ENSG00000152484.13 protein_coding USP12 2 OTTHUMG00000016626.4 +20153 chr13 HAVANA gene 27172259 27182998 279.0 + 0 ENSG00000230641.1 antisense USP12-AS2 1 OTTHUMG00000016628.1 +20154 chr13 HAVANA gene 27236282 27236811 420.0 - 0 ENSG00000234772.1 antisense LINC00412 2 OTTHUMG00000016629.1 overlapping_locus +20155 chr13 HAVANA gene 27178263 27251288 1098.0 - 0 ENSG00000275294.4 lincRNA LINC02340 2 OTTHUMG00000187177.1 overlapping_locus +20156 chr13 ENSEMBL gene 27255064 27255135 72.0 + 0 ENSG00000207500.1 snoRNA SNORD102 3 +20157 chr13 ENSEMBL gene 27255401 27255526 126.0 + 0 ENSG00000207051.1 snoRNA SNORA27 3 +20158 chr13 HAVANA gene 27251309 27256691 2249.0 + 0 ENSG00000122026.10 protein_coding RPL21 2 OTTHUMG00000016630.6 ncRNA_host +20159 chr13 HAVANA gene 27270327 27273690 1624.0 + 0 ENSG00000122035.6 protein_coding RASL11A 2 OTTHUMG00000016627.2 +20160 chr13 ENSEMBL gene 27343687 27343746 60.0 - 0 ENSG00000252247.2 snRNA RNU6-70P 3 +20161 chr13 HAVANA gene 27373348 27374366 580.0 + 0 ENSG00000229609.1 lincRNA LINC01079 1 OTTHUMG00000016631.1 +20162 chr13 ENSEMBL gene 27402476 27402587 112.0 - 0 ENSG00000201242.1 misc_RNA RNY1P1 3 +20163 chr13 HAVANA gene 27424544 27435823 3001.0 + 0 ENSG00000122034.14 protein_coding GTF3A 2 OTTHUMG00000016632.3 +20164 chr13 HAVANA gene 27435643 27450591 1603.0 - 0 ENSG00000122033.14 protein_coding MTIF3 2 OTTHUMG00000016633.2 +20165 chr13 ENSEMBL gene 27488138 27488232 95.0 + 0 ENSG00000252499.1 snRNA RNU6-63P 3 +20166 chr13 HAVANA gene 27545911 27620404 4627.0 - 0 ENSG00000139517.8 protein_coding LNX2 2 OTTHUMG00000016634.5 +20167 chr13 HAVANA gene 27667540 27680566 862.0 - 0 ENSG00000273552.1 lincRNA AL136439.1 2 OTTHUMG00000187184.1 +20168 chr13 HAVANA gene 27696393 27697204 812.0 - 0 ENSG00000226703.1 processed_pseudogene NPM1P4 1 OTTHUMG00000016636.1 pseudo_consens +20169 chr13 HAVANA gene 27620742 27744237 11210.0 + 0 ENSG00000186184.17 protein_coding POLR1D 2 OTTHUMG00000016635.10 +20170 chr13 HAVANA gene 27792643 27794768 1663.0 + 0 ENSG00000169840.4 protein_coding GSX1 2 OTTHUMG00000016637.2 +20171 chr13 ENSEMBL gene 27828763 27828869 107.0 + 0 ENSG00000207330.1 snRNA RNU6-73P 3 +20172 chr13 HAVANA gene 27819376 27917298 2518.0 - 0 ENSG00000247381.3 lincRNA PLUT 2 OTTHUMG00000192355.1 +20173 chr13 HAVANA gene 27920020 27926231 2501.0 + 0 ENSG00000139515.5 protein_coding PDX1 2 OTTHUMG00000016638.2 +20174 chr13 HAVANA gene 27945260 27945415 156.0 + 0 ENSG00000180389.7 processed_pseudogene ATP5F1EP2 1 OTTHUMG00000016642.2 pseudo_consens +20175 chr13 HAVANA gene 27953526 27955370 1845.0 + 0 ENSG00000260704.1 lincRNA LINC00543 2 OTTHUMG00000170880.1 +20176 chr13 HAVANA gene 27962137 27971139 4122.0 - 0 ENSG00000165556.9 protein_coding CDX2 2 OTTHUMG00000016640.5 +20177 chr13 HAVANA gene 27977714 27988654 931.0 - 0 ENSG00000183463.5 protein_coding URAD 2 OTTHUMG00000186217.1 +20178 chr13 ENSEMBL gene 27989296 27989584 289.0 - 0 ENSG00000242360.3 misc_RNA RN7SL272P 3 +20179 chr13 HAVANA gene 28067587 28068334 748.0 + 0 ENSG00000271026.1 processed_pseudogene KATNBL1P1 1 OTTHUMG00000184858.1 pseudo_consens +20180 chr13 HAVANA gene 28003274 28100592 4159.0 - 0 ENSG00000122025.14 protein_coding FLT3 2 OTTHUMG00000016646.3 +20181 chr13 HAVANA gene 28107431 28107877 447.0 + 0 ENSG00000235115.3 processed_pseudogene CHCHD2P8 1 OTTHUMG00000016643.1 pseudo_consens +20182 chr13 HAVANA gene 28136843 28138193 1351.0 - 0 ENSG00000261485.1 antisense PAN3-AS1 2 OTTHUMG00000175971.1 +20183 chr13 HAVANA gene 28214513 28215897 1385.0 + 0 ENSG00000232587.1 processed_pseudogene EEF1A1P3 1 OTTHUMG00000016644.1 pseudo_consens,overlapping_locus +20184 chr13 ENSEMBL gene 28232501 28232607 107.0 + 0 ENSG00000200840.1 snRNA RNU6-82P 3 +20185 chr13 HAVANA gene 28138506 28295335 6352.0 + 0 ENSG00000152520.13 protein_coding PAN3 1 OTTHUMG00000016645.5 ncRNA_host,overlapping_locus +20186 chr13 HAVANA gene 28300344 28495145 12567.0 - 0 ENSG00000102755.11 protein_coding FLT1 2 OTTHUMG00000016648.5 +20187 chr13 HAVANA gene 28495633 28497267 1635.0 + 0 ENSG00000279393.1 TEC AL139005.1 2 OTTHUMG00000175973.1 +20188 chr13 HAVANA gene 28598833 28600052 1220.0 + 0 ENSG00000235472.1 processed_pseudogene EIF4A1P7 1 OTTHUMG00000016649.1 pseudo_consens +20189 chr13 ENSEMBL gene 28629794 28629883 90.0 + 0 ENSG00000273964.1 misc_RNA RF00019 3 +20190 chr13 HAVANA gene 28659104 28678925 1428.0 + 0 ENSG00000132963.7 protein_coding POMP 2 OTTHUMG00000016652.2 +20191 chr13 ENSEMBL gene 28703702 28703807 106.0 - 0 ENSG00000202237.1 snRNA RNU6-53P 3 +20192 chr13 HAVANA gene 28700064 28718970 3776.0 - 0 ENSG00000139508.14 protein_coding SLC46A3 1 OTTHUMG00000016650.3 ncRNA_host +20193 chr13 HAVANA gene 28722386 28724021 1499.0 - 0 ENSG00000233588.1 processed_pseudogene CYP51A1P2 1 OTTHUMG00000016651.1 pseudo_consens +20194 chr13 HAVANA gene 28778224 28778448 225.0 - 0 ENSG00000277227.1 unprocessed_pseudogene AL359741.1 2 OTTHUMG00000187797.1 +20195 chr13 HAVANA gene 28778558 28778937 380.0 + 0 ENSG00000236339.1 processed_pseudogene POM121L13P 2 OTTHUMG00000016653.1 +20196 chr13 HAVANA gene 29239379 29250554 1059.0 - 0 ENSG00000236758.5 antisense MTUS2-AS2 2 OTTHUMG00000016655.1 +20197 chr13 HAVANA gene 29306778 29307785 1008.0 + 0 ENSG00000223460.1 processed_pseudogene GAPDHP69 1 OTTHUMG00000016654.2 pseudo_consens,overlapping_locus +20198 chr13 HAVANA gene 29339566 29339869 304.0 - 0 ENSG00000270680.1 processed_pseudogene AL596092.1 1 OTTHUMG00000184714.1 pseudo_consens +20199 chr13 HAVANA gene 29476515 29490105 2567.0 - 0 ENSG00000179141.9 antisense MTUS2-AS1 2 OTTHUMG00000016656.4 +20200 chr13 HAVANA gene 28820348 29505947 8445.0 + 0 ENSG00000132938.19 protein_coding MTUS2 2 OTTHUMG00000016657.5 overlapping_locus +20201 chr13 HAVANA gene 29509410 29595688 7692.0 - 0 ENSG00000139514.12 protein_coding SLC7A1 2 OTTHUMG00000016658.5 +20202 chr13 HAVANA gene 29764371 29850684 4384.0 - 0 ENSG00000122042.9 protein_coding UBL3 2 OTTHUMG00000016661.1 +20203 chr13 ENSEMBL gene 29864372 29864629 258.0 - 0 ENSG00000278172.1 misc_RNA RF00017 3 +20204 chr13 HAVANA gene 29865959 29866169 211.0 - 0 ENSG00000236258.1 processed_pseudogene TIMM8BP1 1 OTTHUMG00000016660.1 pseudo_consens +20205 chr13 HAVANA gene 29872613 29888405 913.0 - 0 ENSG00000224329.2 lincRNA LINC00297 2 OTTHUMG00000147351.2 +20206 chr13 HAVANA gene 29918647 29926651 575.0 - 0 ENSG00000224405.1 antisense LINC00572 2 OTTHUMG00000016662.1 +20207 chr13 HAVANA gene 29935905 29950488 1502.0 + 0 ENSG00000122043.10 lincRNA LINC00544 1 OTTHUMG00000016659.3 +20208 chr13 HAVANA gene 30022021 30023800 1780.0 - 0 ENSG00000266505.1 lincRNA AL354674.1 2 OTTHUMG00000055980.1 +20209 chr13 HAVANA gene 30103178 30108875 2998.0 - 0 ENSG00000224511.1 lincRNA LINC00365 1 OTTHUMG00000016663.2 +20210 chr13 HAVANA gene 30154066 30154586 374.0 + 0 ENSG00000232643.1 lincRNA LINC00385 2 OTTHUMG00000016664.1 +20211 chr13 HAVANA gene 30151886 30159621 6852.0 - 0 ENSG00000232117.1 lincRNA LINC00384 2 OTTHUMG00000055982.1 +20212 chr13 HAVANA gene 30196443 30196881 439.0 - 0 ENSG00000279499.1 TEC AL157770.1 2 OTTHUMG00000055979.1 +20213 chr13 ENSEMBL gene 30281765 30281869 105.0 + 0 ENSG00000252928.1 snRNA RNU6-64P 3 +20214 chr13 HAVANA gene 30296147 30296735 589.0 + 0 ENSG00000215049.3 processed_pseudogene PRDX2P1 1 OTTHUMG00000016666.2 pseudo_consens +20215 chr13 HAVANA gene 30202630 30307484 8105.0 - 0 ENSG00000102781.13 protein_coding KATNAL1 2 OTTHUMG00000016665.4 +20216 chr13 HAVANA gene 30316360 30319903 430.0 - 0 ENSG00000236463.1 lincRNA LINC00427 2 OTTHUMG00000016667.2 +20217 chr13 HAVANA gene 30344672 30347167 2496.0 + 0 ENSG00000279149.1 TEC AL356750.1 2 OTTHUMG00000187210.1 +20218 chr13 HAVANA gene 30340270 30377145 3972.0 - 0 ENSG00000238121.5 lincRNA LINC00426 2 OTTHUMG00000016668.4 +20219 chr13 HAVANA gene 30388785 30404967 4177.0 - 0 ENSG00000285773.1 lincRNA AL161893.1 2 OTTHUMG00000193316.1 +20220 chr13 HAVANA gene 30419519 30422237 448.0 - 0 ENSG00000225039.1 lincRNA LINC01058 2 OTTHUMG00000055981.1 +20221 chr13 HAVANA gene 30422488 30428616 2176.0 + 0 ENSG00000236444.4 protein_coding UBE2L5 2 OTTHUMG00000016669.3 retrogene +20222 chr13 HAVANA gene 30466117 30482294 1443.0 + 0 ENSG00000285840.1 antisense AL353648.1 2 OTTHUMG00000193108.2 +20223 chr13 HAVANA gene 30541643 30542897 1255.0 - 0 ENSG00000232489.1 processed_pseudogene MFAP1P1 1 OTTHUMG00000016673.1 pseudo_consens,overlapping_locus +20224 chr13 HAVANA gene 30539597 30543461 1814.0 - 0 ENSG00000213411.2 processed_pseudogene RBM22P2 1 OTTHUMG00000016672.1 pseudo_consens,overlapping_locus +20225 chr13 HAVANA gene 30553670 30554693 1024.0 + 0 ENSG00000224117.1 processed_pseudogene PTPN2P2 1 OTTHUMG00000016674.1 pseudo_consens +20226 chr13 HAVANA gene 30456704 30617597 7723.0 - 0 ENSG00000189403.14 protein_coding HMGB1 2 OTTHUMG00000016670.7 overlapping_locus +20227 chr13 HAVANA gene 30617693 30660770 5125.0 + 0 ENSG00000132952.11 protein_coding USPL1 2 OTTHUMG00000016675.3 +20228 chr13 ENSEMBL gene 30684029 30684278 250.0 - 0 ENSG00000275788.1 misc_RNA RF00017 3 +20229 chr13 HAVANA gene 30713478 30764426 1715.0 + 0 ENSG00000132965.9 protein_coding ALOX5AP 2 OTTHUMG00000016677.2 +20230 chr13 HAVANA gene 30803206 30810645 906.0 + 0 ENSG00000237879.1 lincRNA LINC00398 1 OTTHUMG00000016676.1 +20231 chr13 HAVANA gene 30882551 30883395 411.0 + 0 ENSG00000236094.1 lincRNA LINC00545 1 OTTHUMG00000016678.1 +20232 chr13 HAVANA gene 30906191 30925572 2374.0 + 0 ENSG00000102802.9 protein_coding MEDAG 1 OTTHUMG00000016679.1 +20233 chr13 HAVANA gene 30881933 30933846 6510.0 - 0 ENSG00000224743.6 antisense TEX26-AS1 1 OTTHUMG00000016681.3 +20234 chr13 HAVANA gene 30932703 30975502 1660.0 + 0 ENSG00000175664.9 protein_coding TEX26 1 OTTHUMG00000016682.2 +20235 chr13 HAVANA gene 30973289 30977623 337.0 - 0 ENSG00000238185.1 antisense AL353680.1 2 OTTHUMG00000016683.1 +20236 chr13 HAVANA gene 30995162 30996138 399.0 - 0 ENSG00000230403.1 lincRNA LINC01066 1 OTTHUMG00000016684.1 +20237 chr13 HAVANA gene 31063306 31115699 1542.0 + 0 ENSG00000231894.2 unitary_pseudogene WDR95P 2 OTTHUMG00000016687.3 +20238 chr13 HAVANA gene 31134974 31162388 8390.0 - 0 ENSG00000120694.19 protein_coding HSPH1 1 OTTHUMG00000016685.5 +20239 chr13 HAVANA gene 31311289 31312921 950.0 + 0 ENSG00000229427.1 processed_pseudogene ANKRD26P4 1 OTTHUMG00000016689.1 pseudo_consens,overlapping_locus +20240 chr13 HAVANA gene 31199936 31332276 4566.0 + 0 ENSG00000187676.7 protein_coding B3GLCT 2 OTTHUMG00000016688.4 overlapping_locus +20241 chr13 HAVANA gene 31419989 31437999 565.0 + 0 ENSG00000278305.1 lincRNA AL161616.2 2 OTTHUMG00000187248.1 +20242 chr13 HAVANA gene 31483414 31483699 286.0 - 0 ENSG00000277319.1 unprocessed_pseudogene AL161616.1 2 OTTHUMG00000187799.1 +20243 chr13 HAVANA gene 31739542 31803388 3319.0 + 0 ENSG00000133105.7 protein_coding RXFP2 2 OTTHUMG00000016690.2 +20244 chr13 HAVANA gene 31952580 31953361 782.0 + 0 ENSG00000229715.5 transcribed_unprocessed_pseudogene EEF1DP3 1 OTTHUMG00000016691.3 pseudo_consens +20245 chr13 HAVANA gene 31960325 31961946 1622.0 - 0 ENSG00000279314.1 TEC AC002525.1 2 OTTHUMG00000175978.1 +20246 chr13 ENSEMBL gene 31975167 31975448 282.0 + 0 ENSG00000278732.1 misc_RNA RF00017 3 +20247 chr13 HAVANA gene 32025314 32031639 1115.0 - 0 ENSG00000237637.1 antisense FRY-AS1 2 OTTHUMG00000016692.1 +20248 chr13 HAVANA gene 31846713 32299122 18849.0 + 0 ENSG00000073910.21 protein_coding FRY 2 OTTHUMG00000016696.8 ncRNA_host +20249 chr13 HAVANA gene 32303700 32315344 1564.0 - 0 ENSG00000189167.11 protein_coding ZAR1L 2 OTTHUMG00000016694.5 +20250 chr13 HAVANA gene 32384660 32386108 1449.0 + 0 ENSG00000215515.2 processed_pseudogene IFIT1P1 1 OTTHUMG00000016693.1 pseudo_consens,overlapping_locus +20251 chr13 HAVANA gene 32315474 32400266 12273.0 + 0 ENSG00000139618.14 protein_coding BRCA2 2 OTTHUMG00000017411.7 overlapping_locus +20252 chr13 ENSEMBL gene 32420390 32420516 127.0 - 0 ENSG00000212293.1 snoRNA RF00190 3 +20253 chr13 HAVANA gene 32400723 32428311 6053.0 - 0 ENSG00000139597.17 protein_coding N4BP2L1 1 OTTHUMG00000016697.7 ncRNA_host,overlapping_locus +20254 chr13 HAVANA gene 32425358 32432954 764.0 - 0 ENSG00000270008.1 processed_transcript AL137247.1 2 OTTHUMG00000016701.2 overlapping_locus +20255 chr13 HAVANA gene 32477274 32478841 1568.0 + 0 ENSG00000229800.1 processed_pseudogene ATP8A2P2 1 OTTHUMG00000016698.1 pseudo_consens +20256 chr13 HAVANA gene 32504506 32509395 4890.0 - 0 ENSG00000281026.1 sense_intronic N4BP2L2-IT2 2 OTTHUMG00000189577.1 +20257 chr13 HAVANA gene 32432417 32538885 16960.0 - 0 ENSG00000244754.8 protein_coding N4BP2L2 2 OTTHUMG00000016700.6 overlapping_locus +20258 chr13 ENSEMBL gene 32763438 32763552 115.0 - 0 ENSG00000207325.1 misc_RNA RNY1P4 3 +20259 chr13 HAVANA gene 32586427 32778019 13212.0 + 0 ENSG00000083642.18 protein_coding PDS5B 2 OTTHUMG00000016704.5 +20260 chr13 HAVANA gene 32782874 32788178 5305.0 + 0 ENSG00000277151.1 lincRNA AL138820.1 2 OTTHUMG00000187329.1 +20261 chr13 HAVANA gene 32877431 32911650 903.0 - 0 ENSG00000226968.1 lincRNA LINC00423 2 OTTHUMG00000016703.1 +20262 chr13 HAVANA gene 32954057 32954401 345.0 - 0 ENSG00000227604.3 processed_pseudogene TOMM22P3 1 OTTHUMG00000016705.2 pseudo_consens +20263 chr13 HAVANA gene 33016433 33066145 5056.0 + 0 ENSG00000133116.7 protein_coding KL 2 OTTHUMG00000017408.1 +20264 chr13 HAVANA gene 33158587 33164409 452.0 - 0 ENSG00000230300.1 sense_intronic STARD13-IT1 2 OTTHUMG00000016706.1 overlapping_locus +20265 chr13 HAVANA gene 33180401 33281584 4005.0 + 0 ENSG00000236581.8 processed_transcript STARD13-AS 2 OTTHUMG00000016710.6 +20266 chr13 HAVANA gene 33333679 33335277 644.0 - 0 ENSG00000227911.3 lincRNA LINC02344 1 OTTHUMG00000016711.3 overlapping_locus +20267 chr13 HAVANA gene 33336216 33336716 501.0 - 0 ENSG00000277386.1 sense_intronic AL138999.1 2 OTTHUMG00000187330.1 overlapping_locus +20268 chr13 HAVANA gene 33335497 33349619 1312.0 + 0 ENSG00000285621.1 antisense AL138999.2 2 OTTHUMG00000193115.1 +20269 chr13 HAVANA gene 33103135 33350630 8388.0 - 0 ENSG00000133121.20 protein_coding STARD13 2 OTTHUMG00000016708.7 overlapping_locus +20270 chr13 HAVANA gene 33610967 33611522 385.0 + 0 ENSG00000234535.1 lincRNA AL161719.1 2 OTTHUMG00000016713.1 +20271 chr13 HAVANA gene 33657436 33659928 382.0 + 0 ENSG00000232986.1 lincRNA AL139081.1 2 OTTHUMG00000016716.1 +20272 chr13 HAVANA gene 33355206 33676768 1535.0 - 0 ENSG00000230490.2 lincRNA AL139383.1 2 OTTHUMG00000016714.2 +20273 chr13 ENSEMBL gene 33829539 33829649 111.0 - 0 ENSG00000252397.1 snRNA RNU5A-4P 3 +20274 chr13 HAVANA gene 33846190 33850825 4636.0 + 0 ENSG00000276672.1 sense_intronic AL161891.1 2 OTTHUMG00000187333.1 overlapping_locus +20275 chr13 HAVANA gene 33818049 33966558 2874.0 + 0 ENSG00000133119.12 protein_coding RFC3 2 OTTHUMG00000016715.3 overlapping_locus +20276 chr13 HAVANA gene 34079411 34080134 724.0 + 0 ENSG00000280431.1 TEC AL160394.1 2 OTTHUMG00000175979.1 +20277 chr13 HAVANA gene 34082429 34083310 882.0 - 0 ENSG00000227254.1 processed_pseudogene VDAC1P12 1 OTTHUMG00000016717.1 pseudo_consens +20278 chr13 ENSEMBL gene 34100711 34100838 128.0 - 0 ENSG00000199196.1 snoRNA RF00402 3 +20279 chr13 HAVANA gene 34262863 34263090 228.0 + 0 ENSG00000278477.1 unprocessed_pseudogene AL356321.1 2 OTTHUMG00000187800.1 +20280 chr13 HAVANA gene 34574204 34574666 463.0 - 0 ENSG00000231910.1 processed_pseudogene GAMTP2 1 OTTHUMG00000016719.1 pseudo_consens,overlapping_locus +20281 chr13 HAVANA gene 34348043 34614170 573.0 + 0 ENSG00000271850.1 lincRNA LINC02343 2 OTTHUMG00000185756.1 +20282 chr13 HAVANA gene 34435450 34640685 744.0 - 0 ENSG00000225179.1 lincRNA LINC00457 2 OTTHUMG00000016718.1 overlapping_locus +20283 chr13 HAVANA gene 34545929 34671182 273.0 - 0 ENSG00000271901.1 lincRNA AL161716.1 2 OTTHUMG00000185731.1 overlapping_locus +20284 chr13 ENSEMBL gene 34910545 34910815 271.0 - 0 ENSG00000273886.1 misc_RNA RF00017 3 +20285 chr13 HAVANA gene 34925834 34928076 2243.0 - 0 ENSG00000261728.1 lincRNA AL138690.1 2 OTTHUMG00000175980.1 +20286 chr13 HAVANA gene 35185294 35186679 1060.0 + 0 ENSG00000232795.1 processed_pseudogene SCAND3P1 2 OTTHUMG00000016721.1 overlapping_locus +20287 chr13 HAVANA gene 35251070 35251829 760.0 + 0 ENSG00000234835.1 processed_pseudogene PHBP13 1 OTTHUMG00000016722.1 pseudo_consens,overlapping_locus +20288 chr13 HAVANA gene 35474182 35477209 3028.0 - 0 ENSG00000180660.7 protein_coding MAB21L1 2 OTTHUMG00000016723.3 +20289 chr13 HAVANA gene 34942287 35673022 11949.0 + 0 ENSG00000172915.18 protein_coding NBEA 2 OTTHUMG00000016724.2 overlapping_locus +20290 chr13 HAVANA gene 35697524 35699256 756.0 + 0 ENSG00000236036.1 lincRNA LINC00445 1 OTTHUMG00000016726.1 +20291 chr13 HAVANA gene 35768652 36131306 14375.0 - 0 ENSG00000133083.14 protein_coding DCLK1 2 OTTHUMG00000016729.3 +20292 chr13 HAVANA gene 36168208 36214615 3399.0 - 0 ENSG00000120669.15 protein_coding SOHLH2 1 OTTHUMG00000016728.3 overlapping_locus +20293 chr13 ENSEMBL gene 36267168 36267274 107.0 + 0 ENSG00000207203.1 snRNA RNU6-71P 3 +20294 chr13 HAVANA gene 36222008 36297840 8837.0 - 0 ENSG00000242715.7 protein_coding CCDC169 2 OTTHUMG00000016731.3 overlapping_locus +20295 chr13 HAVANA gene 36168794 36297842 2051.0 - 0 ENSG00000250709.1 protein_coding CCDC169-SOHLH2 2 OTTHUMG00000162258.2 overlapping_locus +20296 chr13 HAVANA gene 36346431 36369601 710.0 + 0 ENSG00000120664.10 antisense SPART-AS1 2 OTTHUMG00000016732.3 +20297 chr13 HAVANA gene 36301638 36370180 6387.0 - 0 ENSG00000133104.13 protein_coding SPART 2 OTTHUMG00000016730.6 +20298 chr13 HAVANA gene 36431520 36442882 2400.0 + 0 ENSG00000133101.9 protein_coding CCNA1 2 OTTHUMG00000016733.3 +20299 chr13 HAVANA gene 36490078 36490441 364.0 - 0 ENSG00000223383.1 processed_pseudogene HIST1H2APS6 2 OTTHUMG00000016734.1 +20300 chr13 HAVANA gene 36673912 36697839 3207.0 + 0 ENSG00000180440.3 protein_coding SERTM1 2 OTTHUMG00000016735.2 +20301 chr13 HAVANA gene 36740041 36740863 823.0 + 0 ENSG00000235306.2 processed_pseudogene GAPDHP34 1 OTTHUMG00000016736.2 pseudo_consens +20302 chr13 HAVANA gene 36741878 36742465 588.0 - 0 ENSG00000223543.1 processed_pseudogene TCEAL4P1 1 OTTHUMG00000016737.1 pseudo_consens +20303 chr13 HAVANA gene 36789332 36795050 751.0 + 0 ENSG00000215486.5 transcribed_processed_pseudogene ARL2BPP3 1 OTTHUMG00000016739.3 pseudo_consens +20304 chr13 HAVANA gene 36804198 36805302 1105.0 - 0 ENSG00000271337.1 processed_pseudogene NDE1P2 1 OTTHUMG00000184715.1 pseudo_consens +20305 chr13 HAVANA gene 36819224 36829104 2306.0 + 0 ENSG00000133111.3 protein_coding RFXAP 2 OTTHUMG00000016738.1 +20306 chr13 HAVANA gene 36849366 36850046 504.0 - 0 ENSG00000236711.2 sense_intronic SMAD9-IT1 2 OTTHUMG00000016743.2 overlapping_locus +20307 chr13 HAVANA gene 36844831 36920765 5723.0 - 0 ENSG00000120693.13 protein_coding SMAD9 2 OTTHUMG00000016740.2 overlapping_locus +20308 chr13 HAVANA gene 36922539 36922908 370.0 + 0 ENSG00000228825.1 processed_pseudogene LAMTOR3P1 1 OTTHUMG00000016745.1 pseudo_consens +20309 chr13 HAVANA gene 36926438 36927219 472.0 - 0 ENSG00000232378.1 processed_pseudogene RPL29P28 1 OTTHUMG00000016746.2 pseudo_consens +20310 chr13 HAVANA gene 36938400 36939494 1095.0 - 0 ENSG00000226161.1 processed_pseudogene EIF4A1P5 1 OTTHUMG00000016744.1 pseudo_consens +20311 chr13 HAVANA gene 36949775 37000261 2194.0 - 0 ENSG00000120697.8 protein_coding ALG5 2 OTTHUMG00000016741.2 +20312 chr13 HAVANA gene 36998816 37009613 3630.0 + 0 ENSG00000120699.12 protein_coding EXOSC8 2 OTTHUMG00000016742.4 +20313 chr13 HAVANA gene 37009312 37059713 10933.0 - 0 ENSG00000102710.19 protein_coding SUPT20H 2 OTTHUMG00000016747.5 +20314 chr13 HAVANA gene 37103259 37105664 2406.0 - 0 ENSG00000180138.7 protein_coding CSNK1A1L 2 OTTHUMG00000016748.1 retrogene +20315 chr13 HAVANA gene 37139176 37139585 410.0 - 0 ENSG00000274549.1 unprocessed_pseudogene AL356274.1 1 OTTHUMG00000187801.1 pseudo_consens +20316 chr13 HAVANA gene 37142967 37146718 3752.0 - 0 ENSG00000279511.1 TEC AL356274.2 2 OTTHUMG00000175981.1 +20317 chr13 ENSEMBL gene 37166352 37166658 307.0 - 0 ENSG00000202395.1 misc_RNA RN7SKP1 3 +20318 chr13 HAVANA gene 37220860 37221246 387.0 - 0 ENSG00000230283.1 processed_pseudogene RPS12P24 2 OTTHUMG00000016749.1 +20319 chr13 HAVANA gene 37481467 37484769 511.0 - 0 ENSG00000230390.1 lincRNA LINC01048 2 OTTHUMG00000016750.1 +20320 chr13 HAVANA gene 37534940 37551536 3314.0 + 0 ENSG00000275226.1 lincRNA LINC00547 2 OTTHUMG00000187339.1 +20321 chr13 HAVANA gene 37562583 37598844 5464.0 - 0 ENSG00000133110.14 protein_coding POSTN 2 OTTHUMG00000016751.2 +20322 chr13 ENSEMBL gene 37854852 37854970 119.0 - 0 ENSG00000199276.1 rRNA_pseudogene RNA5SP26 3 +20323 chr13 HAVANA gene 37636636 37870425 4205.0 - 0 ENSG00000133107.14 protein_coding TRPC4 2 OTTHUMG00000016752.4 +20324 chr13 HAVANA gene 37993085 37994720 1636.0 - 0 ENSG00000228036.1 processed_pseudogene HSPD1P9 1 OTTHUMG00000016753.1 pseudo_consens +20325 chr13 HAVANA gene 37934565 38048169 4959.0 + 0 ENSG00000274317.1 lincRNA LINC02334 2 OTTHUMG00000187340.1 +20326 chr13 HAVANA gene 38050817 38143232 1183.0 - 0 ENSG00000223685.5 lincRNA LINC00571 2 OTTHUMG00000016755.1 +20327 chr13 HAVANA gene 38349849 38363619 4382.0 + 0 ENSG00000120686.11 protein_coding UFM1 2 OTTHUMG00000017409.3 +20328 chr13 HAVANA gene 38372856 38373935 1080.0 + 0 ENSG00000279025.1 TEC AL356863.1 2 OTTHUMG00000175983.1 +20329 chr13 HAVANA gene 38533343 38545299 791.0 - 0 ENSG00000236354.1 lincRNA LINC00437 1 OTTHUMG00000016756.1 +20330 chr13 HAVANA gene 38576640 38578994 435.0 + 0 ENSG00000229437.1 lincRNA LINC00366 2 OTTHUMG00000016758.1 +20331 chr13 HAVANA gene 38617419 38617940 522.0 - 0 ENSG00000234701.1 processed_pseudogene PRDX3P3 1 OTTHUMG00000016757.1 pseudo_consens +20332 chr13 ENSEMBL gene 38779424 38779516 93.0 + 0 ENSG00000252795.1 snRNA RNU6-56P 3 +20333 chr13 HAVANA gene 38821798 38827570 465.0 - 0 ENSG00000225350.1 antisense FREM2-AS1 1 OTTHUMG00000016760.1 +20334 chr13 HAVANA gene 38687129 38887131 16223.0 + 0 ENSG00000150893.10 protein_coding FREM2 2 OTTHUMG00000016759.4 ncRNA_host +20335 chr13 HAVANA gene 38902387 38902650 264.0 + 0 ENSG00000225221.1 processed_pseudogene PLA2G12AP2 1 OTTHUMG00000016761.1 pseudo_consens +20336 chr13 HAVANA gene 38922727 38936199 1710.0 - 0 ENSG00000235550.1 unprocessed_pseudogene ANKRD26P2 2 OTTHUMG00000016762.1 +20337 chr13 HAVANA gene 38965925 38991066 2205.0 - 0 ENSG00000133115.11 protein_coding STOML3 2 OTTHUMG00000016763.2 +20338 chr13 HAVANA gene 39009866 39038076 7315.0 - 0 ENSG00000120685.19 protein_coding PROSER1 2 OTTHUMG00000016764.8 +20339 chr13 HAVANA gene 39038306 39050109 6409.0 + 0 ENSG00000188811.13 protein_coding NHLRC3 1 OTTHUMG00000016765.5 +20340 chr13 HAVANA gene 39169636 39169951 316.0 - 0 ENSG00000214823.3 processed_pseudogene NXT1P1 2 OTTHUMG00000016766.1 +20341 chr13 HAVANA gene 39053072 39221927 1099.0 + 0 ENSG00000273507.4 lincRNA AL354809.1 2 OTTHUMG00000187359.1 +20342 chr13 HAVANA gene 39209116 39603528 4564.0 - 0 ENSG00000183722.8 protein_coding LHFPL6 2 OTTHUMG00000016767.3 +20343 chr13 ENSEMBL gene 39664034 39664135 102.0 - 0 ENSG00000264171.1 miRNA MIR4305 3 +20344 chr13 ENSEMBL gene 39785415 39785510 96.0 - 0 ENSG00000200526.1 misc_RNA RNY4P14 3 +20345 chr13 HAVANA gene 39655627 39791665 8051.0 + 0 ENSG00000133103.16 protein_coding COG6 2 OTTHUMG00000016768.5 +20346 chr13 HAVANA gene 39817741 39818049 309.0 - 0 ENSG00000224351.2 processed_pseudogene CDKN2AIPNLP3 1 OTTHUMG00000016769.2 pseudo_consens +20347 chr13 HAVANA gene 39856710 39857094 385.0 - 0 ENSG00000270444.1 processed_pseudogene AZU1P1 1 OTTHUMG00000184719.1 pseudo_consens +20348 chr13 ENSEMBL gene 39857135 39857227 93.0 - 0 ENSG00000212553.1 snoRNA RF00108 3 +20349 chr13 HAVANA gene 40181809 40189028 834.0 + 0 ENSG00000230710.1 lincRNA LINC00332 2 OTTHUMG00000016770.1 +20350 chr13 HAVANA gene 40224625 40224862 238.0 - 0 ENSG00000271429.1 processed_pseudogene RPL17P51 1 OTTHUMG00000184721.1 pseudo_consens,overlapping_locus +20351 chr13 ENSEMBL gene 40226827 40226932 106.0 + 0 ENSG00000207458.1 misc_RNA RNY3P9 3 +20352 chr13 ENSEMBL gene 40407122 40407440 319.0 - 0 ENSG00000252812.1 misc_RNA RN7SKP2 3 +20353 chr13 HAVANA gene 40079106 40535807 18352.0 - 0 ENSG00000215483.10 lincRNA LINC00598 2 OTTHUMG00000016772.7 ncRNA_host,overlapping_locus +20354 chr13 HAVANA gene 40618738 40621348 1680.0 + 0 ENSG00000229456.1 processed_pseudogene RLIMP1 1 OTTHUMG00000016774.1 pseudo_consens +20355 chr13 HAVANA gene 40469953 40666597 6232.0 - 0 ENSG00000150907.7 protein_coding FOXO1 2 OTTHUMG00000016775.4 +20356 chr13 ENSEMBL gene 40727828 40727875 48.0 - 0 ENSG00000211491.2 miRNA MIR320D1 3 +20357 chr13 ENSEMBL gene 40730981 40731253 273.0 + 0 ENSG00000277794.1 misc_RNA RF00017 3 +20358 chr13 HAVANA gene 40729135 40771173 2124.0 - 0 ENSG00000102738.7 protein_coding MRPS31 2 OTTHUMG00000016777.3 +20359 chr13 HAVANA gene 40789412 40810111 1837.0 + 0 ENSG00000102743.14 protein_coding SLC25A15 2 OTTHUMG00000016776.6 +20360 chr13 ENSEMBL gene 40810766 40810861 96.0 + 0 ENSG00000207652.1 miRNA MIR621 3 +20361 chr13 HAVANA gene 40863599 40863902 304.0 - 0 ENSG00000176268.5 processed_pseudogene CYCSP34 1 OTTHUMG00000016778.1 pseudo_consens,overlapping_locus +20362 chr13 HAVANA gene 40822296 40921749 1913.0 - 0 ENSG00000168852.12 transcribed_unprocessed_pseudogene TPTE2P5 1 OTTHUMG00000016779.2 pseudo_consens,overlapping_locus +20363 chr13 HAVANA gene 40882577 40921774 1763.0 - 0 ENSG00000239827.8 transcribed_unprocessed_pseudogene SUGT1P3 2 OTTHUMG00000016780.6 overlapping_locus +20364 chr13 HAVANA gene 40992779 40993331 553.0 - 0 ENSG00000229473.2 processed_pseudogene RGS17P1 1 OTTHUMG00000016782.2 pseudo_consens,overlapping_locus +20365 chr13 HAVANA gene 40932028 41061440 4335.0 - 0 ENSG00000120690.15 protein_coding ELF1 2 OTTHUMG00000016783.7 overlapping_locus +20366 chr13 HAVANA gene 41061274 41084006 2623.0 + 0 ENSG00000120688.8 protein_coding WBP4 2 OTTHUMG00000016784.3 +20367 chr13 ENSEMBL gene 41101019 41101100 82.0 - 0 ENSG00000264226.1 miRNA MIR3168 3 +20368 chr13 ENSEMBL gene 41121876 41122171 296.0 + 0 ENSG00000244264.3 misc_RNA RN7SL597P 3 +20369 chr13 HAVANA gene 41127569 41132746 5178.0 - 0 ENSG00000165572.7 protein_coding KBTBD6 2 OTTHUMG00000016786.1 +20370 chr13 HAVANA gene 41170700 41171148 449.0 - 0 ENSG00000215482.3 processed_pseudogene CALM2P3 1 OTTHUMG00000016785.2 pseudo_consens +20371 chr13 HAVANA gene 41189833 41194566 4734.0 - 0 ENSG00000120696.8 protein_coding KBTBD7 2 OTTHUMG00000016789.1 +20372 chr13 HAVANA gene 41199832 41200807 976.0 - 0 ENSG00000225133.1 processed_pseudogene MORF4L1P4 1 OTTHUMG00000016787.1 pseudo_consens +20373 chr13 HAVANA gene 41229180 41229676 497.0 - 0 ENSG00000277662.1 sense_intronic AL354696.1 2 OTTHUMG00000187365.1 overlapping_locus +20374 chr13 HAVANA gene 41132939 41236686 2731.0 + 0 ENSG00000278390.4 antisense AL354696.2 2 OTTHUMG00000187364.1 +20375 chr13 HAVANA gene 41216369 41263577 3841.0 - 0 ENSG00000120662.15 protein_coding MTRF1 2 OTTHUMG00000016790.6 overlapping_locus +20376 chr13 HAVANA gene 41287741 41288320 580.0 - 0 ENSG00000231404.2 processed_pseudogene RAC1P3 1 OTTHUMG00000016788.2 pseudo_consens +20377 chr13 ENSEMBL gene 41354557 41354659 103.0 - 0 ENSG00000223280.1 snRNA RNU6-57P 3 +20378 chr13 HAVANA gene 41311205 41377030 5867.0 + 0 ENSG00000172766.18 protein_coding NAA16 2 OTTHUMG00000016791.6 +20379 chr13 HAVANA gene 41384773 41385183 411.0 - 0 ENSG00000214222.2 processed_pseudogene TUBBP2 2 OTTHUMG00000016794.1 +20380 chr13 HAVANA gene 41431248 41432201 954.0 - 0 ENSG00000205240.4 unprocessed_pseudogene OR7E36P 2 OTTHUMG00000016793.3 +20381 chr13 HAVANA gene 41439834 41440847 1014.0 - 0 ENSG00000234655.3 unprocessed_pseudogene OR7E155P 1 OTTHUMG00000016792.2 pseudo_consens +20382 chr13 HAVANA gene 41442770 41443666 897.0 + 0 ENSG00000215480.4 unprocessed_pseudogene OR7E37P 2 OTTHUMG00000016795.2 +20383 chr13 HAVANA gene 41457559 41470882 1032.0 + 0 ENSG00000102760.12 protein_coding RGCC 2 OTTHUMG00000016796.1 +20384 chr13 ENSEMBL gene 41568286 41568395 110.0 - 0 ENSG00000284584.1 miRNA MIR5006 3 +20385 chr13 ENSEMBL gene 41807677 41807973 297.0 + 0 ENSG00000241406.3 misc_RNA RN7SL515P 3 +20386 chr13 ENSEMBL gene 41905118 41905224 107.0 + 0 ENSG00000206962.1 snRNA RNU6-74P 3 +20387 chr13 HAVANA gene 41925598 41927349 1752.0 + 0 ENSG00000229696.1 processed_pseudogene KARSP1 1 OTTHUMG00000016797.1 pseudo_consens +20388 chr13 HAVANA gene 41566837 41961120 7633.0 - 0 ENSG00000102763.17 protein_coding VWA8 2 OTTHUMG00000016799.5 ncRNA_host +20389 chr13 HAVANA gene 41955808 41981565 2150.0 + 0 ENSG00000278338.4 antisense VWA8-AS1 2 OTTHUMG00000187366.1 +20390 chr13 HAVANA gene 42003430 42003637 208.0 + 0 ENSG00000226093.1 processed_pseudogene RPS28P8 1 OTTHUMG00000016798.1 pseudo_consens +20391 chr13 HAVANA gene 42043727 42044247 363.0 - 0 ENSG00000231530.1 antisense AL157932.1 2 OTTHUMG00000016801.1 +20392 chr13 HAVANA gene 42068932 42071093 2162.0 - 0 ENSG00000237263.1 processed_pseudogene MAPK6P3 1 OTTHUMG00000016800.1 pseudo_consens +20393 chr13 HAVANA gene 42181465 42181921 457.0 - 0 ENSG00000270809.1 processed_pseudogene CHCHD2P11 1 OTTHUMG00000184722.1 pseudo_consens +20394 chr13 HAVANA gene 42255873 42256575 703.0 + 0 ENSG00000234213.1 processed_pseudogene FHP1 1 OTTHUMG00000016802.1 pseudo_consens,overlapping_locus +20395 chr13 HAVANA gene 42040036 42256578 19637.0 + 0 ENSG00000102780.16 protein_coding DGKH 2 OTTHUMG00000016804.6 overlapping_locus +20396 chr13 HAVANA gene 42272153 42323267 9920.0 + 0 ENSG00000023516.8 protein_coding AKAP11 2 OTTHUMG00000016805.3 +20397 chr13 HAVANA gene 42369259 42369657 399.0 - 0 ENSG00000233259.4 processed_pseudogene FABP3P2 1 OTTHUMG00000016806.2 pseudo_consens +20398 chr13 HAVANA gene 42339188 42485956 1870.0 + 0 ENSG00000283554.1 lincRNA LINC02341 2 OTTHUMG00000191682.1 +20399 chr13 HAVANA gene 42562736 42608013 2733.0 + 0 ENSG00000120659.14 protein_coding TNFSF11 2 OTTHUMG00000016807.4 +20400 chr13 HAVANA gene 42781550 42791549 3308.0 + 0 ENSG00000179813.6 protein_coding FAM216B 2 OTTHUMG00000016809.3 +20401 chr13 HAVANA gene 42810366 42812562 760.0 - 0 ENSG00000271216.1 lincRNA LINC01050 2 OTTHUMG00000184191.1 +20402 chr13 HAVANA gene 42842414 42842887 227.0 - 0 ENSG00000229546.1 lincRNA LINC00428 2 OTTHUMG00000016811.1 +20403 chr13 HAVANA gene 42933858 42934892 1035.0 + 0 ENSG00000238025.1 processed_pseudogene ZDHHC4P1 1 OTTHUMG00000016812.1 pseudo_consens +20404 chr13 HAVANA gene 42886388 42992271 4924.0 - 0 ENSG00000133106.14 protein_coding EPSTI1 2 OTTHUMG00000016814.4 +20405 chr13 HAVANA gene 43023203 43114224 8042.0 + 0 ENSG00000120675.5 protein_coding DNAJC15 2 OTTHUMG00000016813.3 +20406 chr13 HAVANA gene 43158631 43159466 547.0 + 0 ENSG00000229928.1 lincRNA LINC00400 1 OTTHUMG00000016815.1 +20407 chr13 HAVANA gene 43179501 43181193 1693.0 - 0 ENSG00000276569.1 processed_pseudogene AL138709.1 2 OTTHUMG00000187803.1 +20408 chr13 HAVANA gene 43394525 43394825 301.0 + 0 ENSG00000232540.1 processed_pseudogene RPL36P19 1 OTTHUMG00000016816.1 pseudo_consens +20409 chr13 HAVANA gene 43458465 43459484 609.0 + 0 ENSG00000238189.2 antisense ENOX1-AS2 2 OTTHUMG00000016817.2 +20410 chr13 HAVANA gene 43543918 43548056 3907.0 + 0 ENSG00000233821.1 lincRNA ENOX1-AS1 2 OTTHUMG00000016819.1 +20411 chr13 HAVANA gene 43213518 43786908 3101.0 - 0 ENSG00000120658.13 protein_coding ENOX1 2 OTTHUMG00000016818.2 +20412 chr13 HAVANA gene 43787591 43787852 262.0 + 0 ENSG00000270522.1 lincRNA AL162713.1 2 OTTHUMG00000185241.1 +20413 chr13 HAVANA gene 43877715 43878163 449.0 - 0 ENSG00000274001.1 sense_intronic AL512506.1 2 OTTHUMG00000187382.1 overlapping_locus +20414 chr13 HAVANA gene 43823909 43879727 5403.0 - 0 ENSG00000151773.12 protein_coding CCDC122 2 OTTHUMG00000017413.8 overlapping_locus +20415 chr13 HAVANA gene 43879284 43893932 4550.0 + 0 ENSG00000179630.10 protein_coding LACC1 2 OTTHUMG00000016826.4 overlapping_locus +20416 chr13 HAVANA gene 43894725 43895182 458.0 - 0 ENSG00000280060.1 TEC AL512506.2 2 OTTHUMG00000187400.1 +20417 chr13 HAVANA gene 43968424 43971199 2776.0 + 0 ENSG00000179611.3 processed_pseudogene DGKZP1 1 OTTHUMG00000016825.2 pseudo_consens,overlapping_locus +20418 chr13 HAVANA gene 43883800 44028526 1792.0 + 0 ENSG00000281883.1 protein_coding AL512506.3 2 OTTHUMG00000189707.1 overlapping_locus +20419 chr13 HAVANA gene 43908669 44030461 5160.0 + 0 ENSG00000233725.7 lincRNA LINC00284 2 OTTHUMG00000016827.8 overlapping_locus +20420 chr13 HAVANA gene 44106378 44137236 340.0 - 0 ENSG00000226519.1 lincRNA LINC00390 2 OTTHUMG00000016828.1 +20421 chr13 HAVANA gene 44146470 44158222 478.0 - 0 ENSG00000235285.1 sense_intronic SMIM2-IT1 2 OTTHUMG00000016830.1 overlapping_locus +20422 chr13 HAVANA gene 44143543 44161257 824.0 - 0 ENSG00000139656.6 protein_coding SMIM2 2 OTTHUMG00000016831.2 overlapping_locus +20423 chr13 ENSEMBL gene 44196129 44196200 72.0 - 0 ENSG00000276319.1 miRNA MIR8079 3 +20424 chr13 HAVANA gene 44196006 44197298 555.0 + 0 ENSG00000276854.1 lincRNA AL589745.2 2 OTTHUMG00000187401.1 overlapping_locus +20425 chr13 HAVANA gene 44110451 44240517 3009.0 + 0 ENSG00000227258.5 antisense SMIM2-AS1 2 OTTHUMG00000016829.3 overlapping_locus +20426 chr13 HAVANA gene 44234118 44243192 3336.0 - 0 ENSG00000230731.2 lincRNA AL589745.1 2 OTTHUMG00000184168.1 +20427 chr13 HAVANA gene 44369365 44369877 513.0 - 0 ENSG00000277831.1 lincRNA AL138960.1 2 OTTHUMG00000187407.1 +20428 chr13 HAVANA gene 44373665 44397714 1927.0 + 0 ENSG00000151778.10 protein_coding SERP2 2 OTTHUMG00000016833.4 +20429 chr13 HAVANA gene 44400250 44405984 1334.0 - 0 ENSG00000237361.2 lincRNA TUSC8 1 OTTHUMG00000016834.2 +20430 chr13 HAVANA gene 44432144 44432678 535.0 + 0 ENSG00000280357.1 TEC AL138960.2 2 OTTHUMG00000175985.1 +20431 chr13 HAVANA gene 44437057 44464921 850.0 + 0 ENSG00000225727.3 transcribed_processed_pseudogene AL139184.1 1 OTTHUMG00000016835.3 pseudo_consens +20432 chr13 HAVANA gene 44432143 44577147 8586.0 - 0 ENSG00000102804.14 protein_coding TSC22D1 2 OTTHUMG00000016838.7 +20433 chr13 HAVANA gene 44575893 44580432 3457.0 + 0 ENSG00000278156.1 antisense TSC22D1-AS1 2 OTTHUMG00000187411.1 +20434 chr13 HAVANA gene 44594858 44596082 1225.0 + 0 ENSG00000230793.1 processed_pseudogene SMARCE1P5 1 OTTHUMG00000016836.3 pseudo_consens +20435 chr13 HAVANA gene 44651812 44701016 295.0 + 0 ENSG00000237585.1 lincRNA LINC00407 2 OTTHUMG00000016839.1 +20436 chr13 HAVANA gene 44684487 44715393 415.0 - 0 ENSG00000276527.1 lincRNA AL356515.1 2 OTTHUMG00000187412.1 +20437 chr13 HAVANA gene 44799503 44809630 2036.0 - 0 ENSG00000235097.1 lincRNA LINC00330 2 OTTHUMG00000016840.1 +20438 chr13 HAVANA gene 44939249 44989483 3492.0 - 0 ENSG00000083635.7 protein_coding NUFIP1 2 OTTHUMG00000016842.2 overlapping_locus +20439 chr13 ENSEMBL gene 45002150 45002447 298.0 + 0 ENSG00000265802.2 misc_RNA RN7SL49P 3 +20440 chr13 HAVANA gene 44989529 45037669 10842.0 + 0 ENSG00000133114.17 protein_coding GPALPP1 1 OTTHUMG00000016841.7 ncRNA_host +20441 chr13 ENSEMBL gene 45060729 45061086 358.0 + 0 ENSG00000223341.1 misc_RNA RN7SKP3 3 +20442 chr13 HAVANA gene 44982077 45083125 315.0 - 0 ENSG00000223732.2 lincRNA AL359706.1 2 OTTHUMG00000016843.2 overlapping_locus +20443 chr13 ENSEMBL gene 45123093 45123414 322.0 + 0 ENSG00000271818.1 misc_RNA RN7SKP4 3 +20444 chr13 HAVANA gene 45124015 45124143 129.0 - 0 ENSG00000277358.1 unprocessed_pseudogene AL138693.1 1 OTTHUMG00000187804.1 pseudo_consens +20445 chr13 HAVANA gene 45192853 45194717 1865.0 - 0 ENSG00000180332.6 protein_coding KCTD4 2 OTTHUMG00000016844.1 +20446 chr13 HAVANA gene 45263690 45263915 226.0 + 0 ENSG00000270381.1 processed_pseudogene AL138963.2 1 OTTHUMG00000184727.1 pseudo_consens,overlapping_locus +20447 chr13 HAVANA gene 45120515 45284909 3619.0 + 0 ENSG00000188342.11 protein_coding GTF2F2 2 OTTHUMG00000016849.4 ncRNA_host,overlapping_locus +20448 chr13 ENSEMBL gene 45336314 45336447 134.0 - 0 ENSG00000253051.1 snoRNA RF00322 3 +20449 chr13 ENSEMBL gene 45337480 45337609 130.0 - 0 ENSG00000199477.1 snoRNA SNORA31 3 +20450 chr13 HAVANA gene 45340039 45341183 588.0 + 0 ENSG00000273149.1 antisense AL138963.3 2 OTTHUMG00000186000.1 +20451 chr13 HAVANA gene 45333471 45341370 7269.0 - 0 ENSG00000133112.16 protein_coding TPT1 1 OTTHUMG00000016845.7 ncRNA_host +20452 chr13 HAVANA gene 45350323 45351350 310.0 + 0 ENSG00000228886.1 lincRNA AL138963.1 2 OTTHUMG00000016846.1 overlapping_locus +20453 chr13 HAVANA gene 45390353 45391267 915.0 - 0 ENSG00000214455.4 processed_pseudogene RCN1P2 1 OTTHUMG00000016852.1 pseudo_consens +20454 chr13 HAVANA gene 45341345 45393413 10402.0 + 0 ENSG00000170919.15 processed_transcript TPT1-AS1 1 OTTHUMG00000016851.5 overlapping_locus +20455 chr13 HAVANA gene 45393316 45418455 6794.0 - 0 ENSG00000174032.16 protein_coding SLC25A30 1 OTTHUMG00000016853.6 +20456 chr13 HAVANA gene 45418162 45420371 701.0 + 0 ENSG00000251015.1 lincRNA SLC25A30-AS1 2 OTTHUMG00000163473.1 +20457 chr13 HAVANA gene 45436121 45436660 540.0 + 0 ENSG00000229303.1 processed_pseudogene PPIAP25 1 OTTHUMG00000016854.1 pseudo_consens +20458 chr13 HAVANA gene 45464898 45536630 6016.0 + 0 ENSG00000136152.14 protein_coding COG3 2 OTTHUMG00000016855.6 +20459 chr13 ENSEMBL gene 45551485 45551603 119.0 - 0 ENSG00000200709.1 rRNA_pseudogene RNA5SP27 3 +20460 chr13 HAVANA gene 45552863 45553136 274.0 - 0 ENSG00000232786.1 processed_pseudogene TIMM9P3 1 OTTHUMG00000016857.1 pseudo_consens,overlapping_locus +20461 chr13 HAVANA gene 45534522 45615739 2940.0 - 0 ENSG00000165837.11 protein_coding ERICH6B 2 OTTHUMG00000016856.3 overlapping_locus +20462 chr13 HAVANA gene 45671845 45672391 547.0 + 0 ENSG00000228869.1 processed_pseudogene COX4I1P2 1 OTTHUMG00000016858.1 pseudo_consens +20463 chr13 HAVANA gene 45687548 45688469 922.0 - 0 ENSG00000237876.1 processed_pseudogene AKR1B1P4 1 OTTHUMG00000016860.1 pseudo_consens,overlapping_locus +20464 chr13 HAVANA gene 45680184 45701184 1721.0 - 0 ENSG00000235366.2 lincRNA LINC01055 2 OTTHUMG00000016859.2 overlapping_locus +20465 chr13 HAVANA gene 45702311 45714559 2125.0 + 0 ENSG00000174015.9 protein_coding SPERT 1 OTTHUMG00000016861.4 +20466 chr13 ENSEMBL gene 45732082 45732356 275.0 - 0 ENSG00000274357.1 misc_RNA RF00017 3 +20467 chr13 HAVANA gene 45777243 45851736 7057.0 - 0 ENSG00000215475.4 protein_coding SIAH3 2 OTTHUMG00000016862.4 +20468 chr13 HAVANA gene 45954465 46052759 10265.0 - 0 ENSG00000123200.16 protein_coding ZC3H13 2 OTTHUMG00000016863.5 +20469 chr13 HAVANA gene 46053195 46105033 1715.0 - 0 ENSG00000080618.14 protein_coding CPB2 2 OTTHUMG00000016867.5 +20470 chr13 HAVANA gene 46052806 46122670 6803.0 + 0 ENSG00000235903.8 antisense CPB2-AS1 2 OTTHUMG00000016865.4 +20471 chr13 ENSEMBL gene 46169458 46169748 291.0 - 0 ENSG00000240767.3 misc_RNA RN7SL288P 3 +20472 chr13 HAVANA gene 46125920 46211871 5061.0 - 0 ENSG00000136167.13 protein_coding LCP1 2 OTTHUMG00000016864.4 ncRNA_host +20473 chr13 ENSEMBL gene 46249942 46250213 272.0 + 0 ENSG00000252854.1 misc_RNA RN7SKP5 3 +20474 chr13 HAVANA gene 46270077 46270617 541.0 + 0 ENSG00000251106.1 processed_pseudogene FAM206BP 1 OTTHUMG00000016869.1 pseudo_consens,overlapping_locus +20475 chr13 HAVANA gene 46211943 46277366 2677.0 + 0 ENSG00000173988.12 protein_coding LRRC63 1 OTTHUMG00000016866.4 ncRNA_host,overlapping_locus +20476 chr13 HAVANA gene 46296445 46297844 1400.0 - 0 ENSG00000261097.1 lincRNA LINC00563 2 OTTHUMG00000175991.1 +20477 chr13 ENSEMBL gene 46374401 46374590 190.0 - 0 ENSG00000223336.1 snRNA RNU2-6P 3 +20478 chr13 ENSEMBL gene 46410454 46410557 104.0 + 0 ENSG00000252385.1 snRNA RNU6-68P 3 +20479 chr13 HAVANA gene 46437394 46437988 595.0 - 0 ENSG00000241353.3 processed_pseudogene PPP1R2P4 2 OTTHUMG00000016876.1 overlapping_locus +20480 chr13 HAVANA gene 46342000 46438190 6105.0 - 0 ENSG00000102445.18 protein_coding RUBCNL 1 OTTHUMG00000016868.9 ncRNA_host,overlapping_locus +20481 chr13 HAVANA gene 46458061 46459324 1264.0 - 0 ENSG00000285576.1 transcribed_unprocessed_pseudogene AL138686.2 2 OTTHUMG00000016875.4 overlapping_locus +20482 chr13 HAVANA gene 46460609 46461121 513.0 + 0 ENSG00000227019.2 unprocessed_pseudogene OR7E101P 2 OTTHUMG00000016871.1 +20483 chr13 HAVANA gene 46490930 46491121 192.0 + 0 ENSG00000205105.6 processed_pseudogene COX17P1 2 OTTHUMG00000016872.2 overlapping_locus +20484 chr13 HAVANA gene 46474246 46493268 315.0 + 0 ENSG00000277228.1 lincRNA AL138686.1 2 OTTHUMG00000187372.1 overlapping_locus +20485 chr13 HAVANA gene 46505118 46505436 319.0 + 0 ENSG00000230243.1 processed_pseudogene FKBP1AP3 1 OTTHUMG00000016873.1 pseudo_consens +20486 chr13 HAVANA gene 46455132 46515958 5667.0 - 0 ENSG00000231817.8 lincRNA LINC01198 2 OTTHUMG00000193368.3 overlapping_locus +20487 chr13 HAVANA gene 46717423 46717688 266.0 + 0 ENSG00000278462.1 sense_intronic AL359880.1 2 OTTHUMG00000187375.1 overlapping_locus +20488 chr13 HAVANA gene 46553168 46753040 7307.0 + 0 ENSG00000136141.14 protein_coding LRCH1 1 OTTHUMG00000016877.7 overlapping_locus +20489 chr13 HAVANA gene 46771256 46797232 3401.0 - 0 ENSG00000139684.13 protein_coding ESD 1 OTTHUMG00000016878.2 +20490 chr13 HAVANA gene 46852143 46856299 603.0 + 0 ENSG00000224517.6 antisense HTR2A-AS1 2 OTTHUMG00000016880.2 +20491 chr13 HAVANA gene 46831550 46897076 5624.0 - 0 ENSG00000102468.10 protein_coding HTR2A 2 OTTHUMG00000016881.4 +20492 chr13 HAVANA gene 47307082 47307301 220.0 + 0 ENSG00000234590.1 processed_pseudogene GNG5P5 1 OTTHUMG00000016882.1 pseudo_consens +20493 chr13 ENSEMBL gene 47458941 47459234 294.0 - 0 ENSG00000244521.3 misc_RNA RN7SL700P 3 +20494 chr13 HAVANA gene 47763460 47764606 1147.0 + 0 ENSG00000234145.1 processed_pseudogene NAP1L4P3 1 OTTHUMG00000016883.1 pseudo_consens +20495 chr13 HAVANA gene 47766640 47767085 446.0 - 0 ENSG00000229423.2 processed_pseudogene RPL27AP8 1 OTTHUMG00000016884.2 pseudo_consens +20496 chr13 HAVANA gene 47825330 47835956 411.0 - 0 ENSG00000228573.1 lincRNA AL138962.1 2 OTTHUMG00000016885.1 +20497 chr13 HAVANA gene 47930153 47932622 2470.0 - 0 ENSG00000260388.2 lincRNA LINC00562 2 OTTHUMG00000175994.2 +20498 chr13 HAVANA gene 48001389 48002552 552.0 + 0 ENSG00000227848.1 antisense SUCLA2-AS1 1 OTTHUMG00000016887.1 +20499 chr13 HAVANA gene 47745736 48037968 8928.0 - 0 ENSG00000136143.15 protein_coding SUCLA2 2 OTTHUMG00000016889.14 +20500 chr13 HAVANA gene 48041751 48042184 434.0 - 0 ENSG00000276968.1 antisense AL158196.1 2 OTTHUMG00000187376.1 +20501 chr13 HAVANA gene 48037567 48047222 2098.0 + 0 ENSG00000136159.3 protein_coding NUDT15 2 OTTHUMG00000016890.3 +20502 chr13 HAVANA gene 48077137 48079991 542.0 + 0 ENSG00000229111.1 antisense MED4-AS1 2 OTTHUMG00000016893.1 +20503 chr13 HAVANA gene 48053323 48095131 2358.0 - 0 ENSG00000136146.14 protein_coding MED4 1 OTTHUMG00000016891.3 +20504 chr13 HAVANA gene 48134358 48134534 177.0 - 0 ENSG00000224510.2 processed_pseudogene POLR2KP2 1 OTTHUMG00000016892.2 pseudo_consens +20505 chr13 HAVANA gene 48232612 48270357 10706.0 + 0 ENSG00000136156.13 protein_coding ITM2B 1 OTTHUMG00000016894.6 +20506 chr13 HAVANA gene 48296513 48303661 1143.0 - 0 ENSG00000231473.2 lincRNA RB1-DT 1 OTTHUMG00000016896.3 +20507 chr13 HAVANA gene 48316863 48320475 3613.0 - 0 ENSG00000238086.5 processed_pseudogene PPP1R26P1 1 OTTHUMG00000016899.1 pseudo_consens +20508 chr13 HAVANA gene 48328084 48328564 481.0 - 0 ENSG00000177197.7 processed_pseudogene PCNPP5 1 OTTHUMG00000016898.1 pseudo_consens +20509 chr13 HAVANA gene 48340797 48341330 534.0 - 0 ENSG00000277684.1 antisense AL392048.1 2 OTTHUMG00000187377.1 +20510 chr13 ENSEMBL gene 48429269 48429554 286.0 + 0 ENSG00000277233.1 misc_RNA RF00017 3 +20511 chr13 HAVANA gene 48389567 48444704 4348.0 - 0 ENSG00000139679.15 protein_coding LPAR6 1 OTTHUMG00000016895.6 +20512 chr13 HAVANA gene 48532013 48532599 587.0 - 0 ENSG00000274929.1 sense_intronic AL157813.1 2 OTTHUMG00000187378.1 overlapping_locus +20513 chr13 HAVANA gene 48488959 48533256 3545.0 - 0 ENSG00000136161.12 protein_coding RCBTB2 2 OTTHUMG00000016902.3 overlapping_locus +20514 chr13 HAVANA gene 48570639 48573317 413.0 - 0 ENSG00000233456.1 lincRNA LINC01077 2 OTTHUMG00000016904.1 +20515 chr13 HAVANA gene 48576974 48578088 962.0 - 0 ENSG00000233610.1 lincRNA LINC00462 2 OTTHUMG00000016905.1 +20516 chr13 HAVANA gene 48303726 48599436 6452.0 + 0 ENSG00000139687.15 protein_coding RB1 1 OTTHUMG00000016900.7 ncRNA_host +20517 chr13 HAVANA gene 48653711 48711226 5372.0 + 0 ENSG00000152207.7 protein_coding CYSLTR2 2 OTTHUMG00000016906.4 +20518 chr13 HAVANA gene 48771128 48771827 700.0 + 0 ENSG00000225131.2 processed_pseudogene PSME2P2 1 OTTHUMG00000016907.1 pseudo_consens +20519 chr13 HAVANA gene 48974967 48976867 1101.0 - 0 ENSG00000275202.1 antisense AL161421.1 2 OTTHUMG00000187380.1 +20520 chr13 ENSEMBL gene 48987915 48988017 103.0 + 0 ENSG00000201662.1 snRNA RNU6-60P 3 +20521 chr13 HAVANA gene 49044079 49046794 1977.0 - 0 ENSG00000223724.1 processed_pseudogene RAD17P2 1 OTTHUMG00000016908.1 pseudo_consens +20522 chr13 ENSEMBL gene 49095391 49095492 102.0 + 0 ENSG00000199788.1 misc_RNA RNY3P2 3 +20523 chr13 HAVANA gene 49187479 49187670 192.0 - 0 ENSG00000235957.1 processed_pseudogene COX7CP1 2 OTTHUMG00000016912.1 +20524 chr13 HAVANA gene 48975912 49209779 7698.0 + 0 ENSG00000102531.16 protein_coding FNDC3A 2 OTTHUMG00000016911.7 ncRNA_host +20525 chr13 HAVANA gene 49210422 49212294 1592.0 - 0 ENSG00000231665.1 processed_pseudogene OGFOD1P1 1 OTTHUMG00000016910.1 pseudo_consens +20526 chr13 HAVANA gene 49220338 49222377 1239.0 + 0 ENSG00000102539.5 protein_coding MLNR 2 OTTHUMG00000016909.2 +20527 chr13 HAVANA gene 49232874 49234399 1244.0 + 0 ENSG00000274351.1 unprocessed_pseudogene AL137000.1 2 OTTHUMG00000187805.1 +20528 chr13 HAVANA gene 49247925 49293485 3863.0 + 0 ENSG00000102543.14 protein_coding CDADC1 2 OTTHUMG00000016913.6 +20529 chr13 HAVANA gene 49308650 49444126 5006.0 - 0 ENSG00000102547.18 protein_coding CAB39L 2 OTTHUMG00000016914.5 +20530 chr13 HAVANA gene 49488970 49489364 219.0 + 0 ENSG00000236577.1 processed_pseudogene SNRPGP14 2 OTTHUMG00000016917.1 overlapping_locus +20531 chr13 HAVANA gene 49444374 49495003 6678.0 + 0 ENSG00000136169.16 protein_coding SETDB2 2 OTTHUMG00000016918.4 overlapping_locus +20532 chr13 HAVANA gene 49495610 49528987 4841.0 + 0 ENSG00000136147.17 protein_coding PHF11 1 OTTHUMG00000016916.5 +20533 chr13 HAVANA gene 49531946 49585583 4534.0 - 0 ENSG00000136144.11 protein_coding RCBTB1 2 OTTHUMG00000016915.4 +20534 chr13 HAVANA gene 49620314 49620646 333.0 + 0 ENSG00000176882.5 processed_pseudogene AL135901.1 2 OTTHUMG00000016921.1 +20535 chr13 HAVANA gene 49628299 49633872 3826.0 + 0 ENSG00000152213.3 protein_coding ARL11 2 OTTHUMG00000016919.2 +20536 chr13 HAVANA gene 49660723 49691475 1500.0 - 0 ENSG00000123179.13 protein_coding EBPL 2 OTTHUMG00000016920.4 +20537 chr13 HAVANA gene 49699307 49792921 4474.0 - 0 ENSG00000102753.9 protein_coding KPNA3 2 OTTHUMG00000016922.3 +20538 chr13 HAVANA gene 49792886 49793307 422.0 + 0 ENSG00000276436.1 antisense AL136301.1 2 OTTHUMG00000187350.1 +20539 chr13 ENSEMBL gene 49889634 49889728 95.0 - 0 ENSG00000222148.1 misc_RNA RNY4P30 3 +20540 chr13 HAVANA gene 49890591 49892998 2408.0 + 0 ENSG00000181358.3 processed_pseudogene CTAGE10P 1 OTTHUMG00000016925.1 pseudo_consens +20541 chr13 ENSEMBL gene 49908634 49908730 97.0 - 0 ENSG00000200064.1 misc_RNA RNY4P9 3 +20542 chr13 HAVANA gene 49912706 49936490 3340.0 - 0 ENSG00000123178.14 protein_coding SPRYD7 2 OTTHUMG00000016924.4 +20543 chr13 ENSEMBL gene 49996415 49996501 87.0 - 0 ENSG00000264864.1 miRNA MIR3613 3 +20544 chr13 HAVANA gene 49995888 50020481 8080.0 + 0 ENSG00000204977.9 protein_coding TRIM13 2 OTTHUMG00000016926.6 overlapping_locus +20545 chr13 HAVANA gene 50015254 50020922 1625.0 + 0 ENSG00000198553.8 protein_coding KCNRG 2 OTTHUMG00000140140.1 overlapping_locus +20546 chr13 ENSEMBL gene 50044649 50044768 120.0 + 0 ENSG00000277913.1 misc_RNA RF02105 3 +20547 chr13 ENSEMBL gene 50045143 50045232 90.0 + 0 ENSG00000277066.1 misc_RNA RF02106 3 +20548 chr13 ENSEMBL gene 50048973 50049061 89.0 - 0 ENSG00000208006.1 miRNA MIR16-1 3 +20549 chr13 ENSEMBL gene 50049119 50049201 83.0 - 0 ENSG00000283785.1 miRNA MIR15A 3 +20550 chr13 ENSEMBL gene 50049591 50049663 73.0 + 0 ENSG00000274878.1 misc_RNA RF02107 3 +20551 chr13 ENSEMBL gene 50068107 50068164 58.0 + 0 ENSG00000273612.1 misc_RNA RF02108 3 +20552 chr13 ENSEMBL gene 50075570 50075653 84.0 + 0 ENSG00000277752.1 misc_RNA RF02109 3 +20553 chr13 ENSEMBL gene 50081843 50081978 136.0 + 0 ENSG00000275559.1 misc_RNA RF02110 3 +20554 chr13 ENSEMBL gene 50082295 50082484 190.0 + 0 ENSG00000276089.1 misc_RNA RF02103 3 +20555 chr13 HAVANA gene 50099331 50099868 538.0 + 0 ENSG00000214359.3 processed_pseudogene RPL18P10 1 OTTHUMG00000016928.1 pseudo_consens,overlapping_locus +20556 chr13 ENSEMBL gene 50104833 50105174 342.0 + 0 ENSG00000273541.1 misc_RNA RF02104 3 +20557 chr13 HAVANA gene 49982552 50125720 5103.0 - 0 ENSG00000231607.10 antisense DLEU2 2 OTTHUMG00000016927.5 ncRNA_host +20558 chr13 HAVANA gene 50125816 50128463 2648.0 + 0 ENSG00000274270.1 sense_intronic AL137060.1 2 OTTHUMG00000187356.1 overlapping_locus +20559 chr13 HAVANA gene 50172089 50173181 1093.0 + 0 ENSG00000232150.3 processed_pseudogene ST13P4 1 OTTHUMG00000016930.1 pseudo_consens,overlapping_locus +20560 chr13 HAVANA gene 50361410 50361763 354.0 - 0 ENSG00000223676.1 processed_pseudogene RPL34P26 1 OTTHUMG00000016931.1 pseudo_consens +20561 chr13 HAVANA gene 50520933 50527449 731.0 - 0 ENSG00000229323.1 lincRNA DLEU1-AS1 2 OTTHUMG00000016932.2 +20562 chr13 HAVANA gene 50082171 50723236 11847.0 + 0 ENSG00000176124.12 processed_transcript DLEU1 2 OTTHUMG00000192280.2 ncRNA_host,overlapping_locus +20563 chr13 ENSEMBL gene 50812988 50813106 119.0 - 0 ENSG00000200711.1 rRNA_pseudogene RNA5SP28 3 +20564 chr13 HAVANA gene 50711008 50843939 3656.0 - 0 ENSG00000186047.9 protein_coding DLEU7 2 OTTHUMG00000016936.2 +20565 chr13 HAVANA gene 50807856 50849905 1806.0 + 0 ENSG00000237152.3 antisense DLEU7-AS1 2 OTTHUMG00000016935.3 +20566 chr13 HAVANA gene 50862172 50910764 4642.0 - 0 ENSG00000233672.6 antisense RNASEH2B-AS1 2 OTTHUMG00000016938.5 +20567 chr13 HAVANA gene 50909678 51024120 26291.0 + 0 ENSG00000136104.20 protein_coding RNASEH2B 2 OTTHUMG00000016937.15 +20568 chr13 ENSEMBL gene 51027747 51027852 106.0 - 0 ENSG00000222920.1 rRNA_pseudogene RNA5SP29 3 +20569 chr13 HAVANA gene 50994511 51080862 4060.0 - 0 ENSG00000123201.14 transcribed_unitary_pseudogene GUCY1B2 2 OTTHUMG00000016940.5 +20570 chr13 HAVANA gene 51161723 51162357 635.0 - 0 ENSG00000214878.2 processed_pseudogene RPL5P31 1 OTTHUMG00000016941.1 pseudo_consens,overlapping_locus +20571 chr13 HAVANA gene 51180178 51180967 790.0 + 0 ENSG00000274652.1 lincRNA AL157817.1 2 OTTHUMG00000187363.1 +20572 chr13 HAVANA gene 51195881 51196081 201.0 + 0 ENSG00000271242.1 processed_pseudogene PRELID3BP2 1 OTTHUMG00000184860.1 pseudo_consens +20573 chr13 HAVANA gene 51082119 51200252 3617.0 - 0 ENSG00000226792.7 protein_coding C13orf42 1 OTTHUMG00000153575.4 overlapping_locus +20574 chr13 HAVANA gene 51222334 51284241 6702.0 + 0 ENSG00000150510.16 protein_coding FAM124A 2 OTTHUMG00000016942.5 +20575 chr13 ENSEMBL gene 51348567 51348639 73.0 - 0 ENSG00000266072.1 miRNA MIR5693 3 +20576 chr13 HAVANA gene 51335773 51364735 2608.0 + 0 ENSG00000253309.6 protein_coding SERPINE3 2 OTTHUMG00000016943.4 +20577 chr13 HAVANA gene 51354077 51454264 25509.0 - 0 ENSG00000102786.14 protein_coding INTS6 1 OTTHUMG00000016945.6 overlapping_locus +20578 chr13 HAVANA gene 51454164 51461315 997.0 + 0 ENSG00000224892.6 transcribed_processed_pseudogene RPS4XP16 1 OTTHUMG00000016946.3 pseudo_consens,overlapping_locus +20579 chr13 ENSEMBL gene 51469753 51470047 295.0 + 0 ENSG00000243900.3 misc_RNA RN7SL320P 3 +20580 chr13 HAVANA gene 51496020 51496251 232.0 - 0 ENSG00000229906.1 processed_pseudogene SNRPGP11 1 OTTHUMG00000016947.1 pseudo_consens +20581 chr13 HAVANA gene 51452367 51552364 9866.0 + 0 ENSG00000236778.7 antisense INTS6-AS1 2 OTTHUMG00000016944.7 ncRNA_host,overlapping_locus +20582 chr13 ENSEMBL gene 51552589 51552667 79.0 + 0 ENSG00000266611.1 miRNA MIR4703 3 +20583 chr13 ENSEMBL gene 51565412 51565509 98.0 + 0 ENSG00000252141.1 snRNA RNU6-65P 3 +20584 chr13 ENSEMBL gene 51586424 51586532 109.0 - 0 ENSG00000206920.1 misc_RNA RNY1P6 3 +20585 chr13 ENSEMBL gene 51593919 51594215 297.0 - 0 ENSG00000242893.3 misc_RNA RN7SL413P 3 +20586 chr13 HAVANA gene 51598416 51599460 569.0 + 0 ENSG00000224451.2 processed_pseudogene ATP5PBP1 1 OTTHUMG00000016948.2 pseudo_consens,overlapping_locus +20587 chr13 HAVANA gene 51584455 51767707 16197.0 + 0 ENSG00000139668.8 protein_coding WDFY2 2 OTTHUMG00000017407.5 overlapping_locus +20588 chr13 HAVANA gene 51767993 51804157 3525.0 - 0 ENSG00000102796.10 protein_coding DHRS12 2 OTTHUMG00000016952.4 overlapping_locus +20589 chr13 HAVANA gene 51803838 51813832 2469.0 + 0 ENSG00000231856.2 antisense AL162377.1 2 OTTHUMG00000016953.3 +20590 chr13 HAVANA gene 51763951 51845159 4372.0 - 0 ENSG00000285444.1 protein_coding AL162377.3 2 OTTHUMG00000192524.1 overlapping_locus +20591 chr13 HAVANA gene 51813347 51845175 4151.0 - 0 ENSG00000281106.3 protein_coding TMEM272 2 OTTHUMG00000189519.3 overlapping_locus +20592 chr13 HAVANA gene 51861981 51866232 1150.0 + 0 ENSG00000123171.6 protein_coding CCDC70 2 OTTHUMG00000016950.3 +20593 chr13 HAVANA gene 51908218 51910621 2404.0 - 0 ENSG00000232872.2 processed_pseudogene CTAGE3P 1 OTTHUMG00000016951.1 pseudo_consens +20594 chr13 HAVANA gene 51921251 51921587 337.0 + 0 ENSG00000279677.1 TEC AL162377.2 2 OTTHUMG00000175998.1 +20595 chr13 HAVANA gene 51966742 51967149 408.0 + 0 ENSG00000236044.1 processed_pseudogene FABP5P2 2 OTTHUMG00000016954.1 +20596 chr13 HAVANA gene 51930436 52012125 9671.0 - 0 ENSG00000123191.14 protein_coding ATP7B 2 OTTHUMG00000017406.2 +20597 chr13 HAVANA gene 52012398 52032171 10335.0 + 0 ENSG00000253710.3 protein_coding ALG11 2 OTTHUMG00000016959.4 overlapping_locus +20598 chr13 HAVANA gene 52024691 52033600 5529.0 + 0 ENSG00000253797.2 protein_coding UTP14C 2 OTTHUMG00000164353.3 retrogene,overlapping_locus +20599 chr13 HAVANA gene 52033611 52129078 6958.0 - 0 ENSG00000197168.12 protein_coding NEK5 2 OTTHUMG00000016957.7 +20600 chr13 HAVANA gene 52128891 52132723 3433.0 + 0 ENSG00000273523.1 antisense AL139082.1 2 OTTHUMG00000187319.1 +20601 chr13 HAVANA gene 52132639 52159861 4272.0 - 0 ENSG00000136098.16 protein_coding NEK3 1 OTTHUMG00000016958.9 +20602 chr13 HAVANA gene 52167954 52168321 368.0 - 0 ENSG00000285160.1 transcribed_unprocessed_pseudogene AL139082.2 2 OTTHUMG00000192389.2 +20603 chr13 HAVANA gene 52169987 52171248 161.0 - 0 ENSG00000285323.1 transcribed_unprocessed_pseudogene AL158066.2 2 OTTHUMG00000192390.1 +20604 chr13 HAVANA gene 52167709 52194465 3873.0 - 0 ENSG00000243406.6 transcribed_unprocessed_pseudogene MRPS31P5 2 OTTHUMG00000016960.1 overlapping_locus +20605 chr13 HAVANA gene 52167709 52291557 3796.0 - 0 ENSG00000217576.7 processed_transcript AL158066.1 2 OTTHUMG00000185730.1 overlapping_locus +20606 chr13 HAVANA gene 52219344 52334277 6223.0 - 0 ENSG00000272281.6 transcribed_unprocessed_pseudogene TPTE2P2 2 OTTHUMG00000016961.1 overlapping_locus +20607 chr13 HAVANA gene 52334295 52341896 852.0 + 0 ENSG00000271564.1 lincRNA LINC02333 2 OTTHUMG00000184174.1 +20608 chr13 ENSEMBL gene 52400004 52400099 96.0 + 0 ENSG00000199605.1 misc_RNA RNY4P24 3 +20609 chr13 HAVANA gene 52377167 52416373 3705.0 - 0 ENSG00000136114.16 protein_coding THSD1 2 OTTHUMG00000016963.6 overlapping_locus +20610 chr13 HAVANA gene 52412602 52450628 5614.0 - 0 ENSG00000136100.13 protein_coding VPS36 2 OTTHUMG00000016964.4 overlapping_locus +20611 chr13 HAVANA gene 52454775 52455331 557.0 - 0 ENSG00000278238.1 lincRNA AL359513.1 2 OTTHUMG00000187321.1 +20612 chr13 HAVANA gene 52455429 52476628 4547.0 + 0 ENSG00000136108.14 protein_coding CKAP2 1 OTTHUMG00000016967.8 +20613 chr13 HAVANA gene 52482804 52489216 1966.0 - 0 ENSG00000235660.2 lincRNA LINC00345 1 OTTHUMG00000016974.2 +20614 chr13 HAVANA gene 52497097 52500195 3099.0 - 0 ENSG00000280296.1 TEC AL137058.3 2 OTTHUMG00000187322.1 +20615 chr13 HAVANA gene 52488993 52587095 4525.0 + 0 ENSG00000244471.6 transcribed_unprocessed_pseudogene AL137058.1 2 OTTHUMG00000016976.2 +20616 chr13 HAVANA gene 52600119 52637446 1000.0 + 0 ENSG00000250299.6 transcribed_unprocessed_pseudogene MRPS31P4 2 OTTHUMG00000187323.2 overlapping_locus +20617 chr13 HAVANA gene 52600042 52642542 985.0 + 0 ENSG00000273784.4 processed_transcript AL137058.2 2 OTTHUMG00000016973.2 overlapping_locus +20618 chr13 HAVANA gene 52642425 52643796 1372.0 + 0 ENSG00000139675.12 protein_coding HNRNPA1L2 2 OTTHUMG00000016972.4 overlapping_locus +20619 chr13 HAVANA gene 52651305 52652279 975.0 - 0 ENSG00000273723.1 lincRNA AL139089.1 2 OTTHUMG00000187324.1 +20620 chr13 HAVANA gene 52652709 52700909 15102.0 + 0 ENSG00000165416.14 protein_coding SUGT1 2 OTTHUMG00000016977.3 +20621 chr13 HAVANA gene 52703264 52739812 1628.0 - 0 ENSG00000136110.12 protein_coding CNMD 2 OTTHUMG00000016980.4 +20622 chr13 ENSEMBL gene 52810050 52810140 91.0 + 0 ENSG00000211579.2 miRNA MIR759 3 +20623 chr13 HAVANA gene 52820497 52821018 522.0 + 0 ENSG00000150276.8 processed_pseudogene PPIAP26 1 OTTHUMG00000016978.2 pseudo_consens +20624 chr13 HAVANA gene 52842889 52848641 5150.0 - 0 ENSG00000136099.13 protein_coding PCDH8 2 OTTHUMG00000016979.4 +20625 chr13 HAVANA gene 53028759 53052057 2897.0 + 0 ENSG00000102837.6 protein_coding OLFM4 2 OTTHUMG00000016981.3 +20626 chr13 HAVANA gene 53146539 53151808 577.0 - 0 ENSG00000237092.1 lincRNA LINC01065 2 OTTHUMG00000016983.1 +20627 chr13 HAVANA gene 53193667 53198540 565.0 + 0 ENSG00000279325.1 lincRNA AL136359.1 2 OTTHUMG00000189146.1 +20628 chr13 HAVANA gene 53199981 53202753 2773.0 + 0 ENSG00000225510.2 transcribed_processed_pseudogene PCDH8P1 1 OTTHUMG00000016982.2 pseudo_consens +20629 chr13 ENSEMBL gene 53258077 53258372 296.0 + 0 ENSG00000241613.3 misc_RNA RN7SL618P 3 +20630 chr13 HAVANA gene 53408882 53409876 995.0 - 0 ENSG00000274316.1 unprocessed_pseudogene ZNF646P1 2 OTTHUMG00000187806.1 +20631 chr13 HAVANA gene 53345211 53410880 1857.0 + 0 ENSG00000273919.1 lincRNA AL450423.1 2 OTTHUMG00000187332.1 +20632 chr13 HAVANA gene 53815419 53876119 3163.0 + 0 ENSG00000261517.1 lincRNA LINC00558 2 OTTHUMG00000176029.1 +20633 chr13 HAVANA gene 54116476 54116851 376.0 + 0 ENSG00000271652.1 processed_pseudogene AL356052.1 2 OTTHUMG00000184863.1 +20634 chr13 HAVANA gene 54115783 54132866 2444.0 - 0 ENSG00000234787.7 lincRNA LINC00458 2 OTTHUMG00000016984.4 +20635 chr13 ENSEMBL gene 54311972 54312048 77.0 - 0 ENSG00000283126.1 miRNA MIR1297 3 +20636 chr13 HAVANA gene 54440704 54441315 612.0 - 0 ENSG00000136149.6 processed_pseudogene RPL13AP25 2 OTTHUMG00000016985.2 +20637 chr13 HAVANA gene 54940843 54986719 918.0 + 0 ENSG00000277047.4 lincRNA AL390964.1 2 OTTHUMG00000187312.1 +20638 chr13 ENSEMBL gene 55128285 55128444 160.0 + 0 ENSG00000275071.1 misc_RNA RF02271 3 +20639 chr13 HAVANA gene 55062945 55161490 659.0 + 0 ENSG00000278630.1 lincRNA LINC02335 2 OTTHUMG00000187313.1 ncRNA_host +20640 chr13 ENSEMBL gene 55174454 55174548 95.0 + 0 ENSG00000264387.1 miRNA MIR5007 3 +20641 chr13 HAVANA gene 55535697 55583524 809.0 - 0 ENSG00000274090.1 lincRNA AL354821.1 2 OTTHUMG00000187316.1 +20642 chr13 HAVANA gene 55999200 56000448 1249.0 - 0 ENSG00000228611.2 processed_pseudogene HNF4GP1 1 OTTHUMG00000016986.2 pseudo_consens +20643 chr13 HAVANA gene 56214373 56216942 2055.0 + 0 ENSG00000228319.1 processed_pseudogene SPATA2P1 1 OTTHUMG00000016987.1 pseudo_consens +20644 chr13 ENSEMBL gene 56885284 56885602 319.0 - 0 ENSG00000201665.1 misc_RNA RN7SKP6 3 +20645 chr13 HAVANA gene 57140918 57143939 1847.0 + 0 ENSG00000204919.1 protein_coding PRR20A 2 OTTHUMG00000160602.1 +20646 chr13 HAVANA gene 57147488 57150509 1847.0 + 0 ENSG00000204918.3 protein_coding PRR20B 2 OTTHUMG00000184243.1 +20647 chr13 HAVANA gene 57140918 57157082 2061.0 + 0 ENSG00000229665.8 protein_coding PRR20C 2 OTTHUMG00000184244.1 +20648 chr13 HAVANA gene 57160632 57163653 1847.0 + 0 ENSG00000227151.4 protein_coding PRR20D 2 OTTHUMG00000184245.1 +20649 chr13 HAVANA gene 57167197 57170218 1847.0 + 0 ENSG00000234278.3 protein_coding PRR20E 2 OTTHUMG00000184246.1 +20650 chr13 HAVANA gene 57173453 57173632 180.0 + 0 ENSG00000271140.1 unprocessed_pseudogene PRR20FP 2 OTTHUMG00000184247.1 +20651 chr13 HAVANA gene 57204379 57204799 421.0 + 0 ENSG00000230009.1 processed_pseudogene MTCO2P3 2 OTTHUMG00000016988.1 +20652 chr13 HAVANA gene 57314739 57315909 869.0 + 0 ENSG00000234421.2 processed_pseudogene SLC25A5P4 1 OTTHUMG00000016989.1 pseudo_consens +20653 chr13 HAVANA gene 57391171 57391518 348.0 - 0 ENSG00000225352.1 processed_pseudogene RPL31P53 1 OTTHUMG00000157160.1 pseudo_consens +20654 chr13 HAVANA gene 57632759 57633575 654.0 - 0 ENSG00000278722.1 antisense AL445288.1 2 OTTHUMG00000188188.1 +20655 chr13 HAVANA gene 57631810 57729311 8326.0 + 0 ENSG00000118946.11 protein_coding PCDH17 2 OTTHUMG00000016992.6 +20656 chr13 ENSEMBL gene 57991350 57991464 115.0 + 0 ENSG00000202422.1 rRNA_pseudogene RNA5SP30 3 +20657 chr13 HAVANA gene 58165827 58209483 2753.0 + 0 ENSG00000277448.1 lincRNA LINC02338 2 OTTHUMG00000187310.1 +20658 chr13 HAVANA gene 58211697 58233117 800.0 - 0 ENSG00000232954.2 lincRNA LINC00374 2 OTTHUMG00000016997.2 +20659 chr13 HAVANA gene 58377513 58377774 262.0 + 0 ENSG00000276208.1 unprocessed_pseudogene AL161423.1 1 OTTHUMG00000187808.1 pseudo_consens +20660 chr13 ENSEMBL gene 58527655 58527751 97.0 - 0 ENSG00000222733.1 misc_RNA RNY4P29 3 +20661 chr13 HAVANA gene 58528615 58531026 2412.0 + 0 ENSG00000214335.3 processed_pseudogene CTAGE16P 1 OTTHUMG00000016998.1 pseudo_consens +20662 chr13 HAVANA gene 58751047 58752233 1187.0 - 0 ENSG00000223717.1 processed_pseudogene DNAJA1P1 1 OTTHUMG00000016999.1 pseudo_consens +20663 chr13 HAVANA gene 59010332 59010604 273.0 + 0 ENSG00000214281.3 processed_pseudogene HMGN2P39 2 OTTHUMG00000017000.2 +20664 chr13 HAVANA gene 59071462 59071803 342.0 - 0 ENSG00000232647.1 processed_pseudogene POLR3KP1 1 OTTHUMG00000017001.1 pseudo_consens +20665 chr13 HAVANA gene 59262680 59263391 712.0 + 0 ENSG00000271190.1 processed_pseudogene RPP40P2 1 OTTHUMG00000184864.1 pseudo_consens +20666 chr13 ENSEMBL gene 59480070 59480132 63.0 + 0 ENSG00000239003.1 snRNA RNU7-88P 3 +20667 chr13 ENSEMBL gene 60034465 60034762 298.0 - 0 ENSG00000265745.2 misc_RNA RN7SL375P 3 +20668 chr13 HAVANA gene 60012751 60044357 536.0 + 0 ENSG00000227528.5 antisense DIAPH3-AS1 2 OTTHUMG00000017002.1 +20669 chr13 HAVANA gene 60144698 60153505 367.0 + 0 ENSG00000223815.1 antisense DIAPH3-AS2 2 OTTHUMG00000017003.1 +20670 chr13 HAVANA gene 59665583 60163987 7259.0 - 0 ENSG00000139734.18 protein_coding DIAPH3 2 OTTHUMG00000017004.6 ncRNA_host +20671 chr13 ENSEMBL gene 60187738 60187830 93.0 - 0 ENSG00000202151.1 misc_RNA RNY4P28 3 +20672 chr13 HAVANA gene 60214352 60214946 419.0 - 0 ENSG00000227336.1 lincRNA LINC00434 2 OTTHUMG00000017005.1 +20673 chr13 HAVANA gene 60274776 60276006 1231.0 + 0 ENSG00000238213.1 processed_pseudogene TARDBPP2 1 OTTHUMG00000017006.1 pseudo_consens +20674 chr13 HAVANA gene 60322591 60322766 176.0 + 0 ENSG00000277549.1 unprocessed_pseudogene AL359920.1 2 OTTHUMG00000187809.1 +20675 chr13 HAVANA gene 60396457 60573878 6814.0 + 0 ENSG00000083544.14 protein_coding TDRD3 2 OTTHUMG00000017007.9 +20676 chr13 ENSEMBL gene 60613608 60613734 127.0 + 0 ENSG00000223076.1 rRNA_pseudogene RNA5SP31 3 +20677 chr13 HAVANA gene 60636888 60638097 1210.0 - 0 ENSG00000236608.1 processed_pseudogene EIF4A1P6 1 OTTHUMG00000017009.1 pseudo_consens +20678 chr13 HAVANA gene 60685199 60694528 481.0 + 0 ENSG00000225249.5 lincRNA LINC00378 2 OTTHUMG00000017008.1 +20679 chr13 HAVANA gene 60730176 60733600 3425.0 + 0 ENSG00000279657.1 TEC AL161901.1 2 OTTHUMG00000176033.1 +20680 chr13 ENSEMBL gene 60789560 60789661 102.0 + 0 ENSG00000206854.1 misc_RNA RNY3P5 3 +20681 chr13 HAVANA gene 60917001 60941768 2107.0 + 0 ENSG00000227510.3 lincRNA LINC01442 2 OTTHUMG00000017010.3 +20682 chr13 ENSEMBL gene 61199798 61199880 83.0 - 0 ENSG00000266663.1 miRNA MIR3169 3 +20683 chr13 HAVANA gene 61409685 61415522 4778.0 - 0 ENSG00000280165.1 protein_coding PCDH20 2 OTTHUMG00000017012.5 overlapping_locus +20684 chr13 HAVANA gene 61409858 61427849 6347.0 - 0 ENSG00000197991.11 protein_coding AL592490.1 2 OTTHUMG00000189120.1 overlapping_locus +20685 chr13 HAVANA gene 61424689 61427946 752.0 - 0 ENSG00000279797.1 lincRNA LINC02339 2 OTTHUMG00000189119.2 overlapping_locus +20686 chr13 HAVANA gene 61805150 61805676 527.0 + 0 ENSG00000234033.1 processed_pseudogene RAC1P8 1 OTTHUMG00000017013.1 pseudo_consens +20687 chr13 HAVANA gene 61927090 61927272 183.0 - 0 ENSG00000270856.1 processed_pseudogene AL353765.1 2 OTTHUMG00000184729.1 +20688 chr13 HAVANA gene 62003525 62029548 1276.0 - 0 ENSG00000229578.2 lincRNA LINC00358 1 OTTHUMG00000017014.2 +20689 chr13 HAVANA gene 62212577 62249947 370.0 + 0 ENSG00000230142.2 lincRNA LINC01075 2 OTTHUMG00000017017.2 +20690 chr13 HAVANA gene 62321305 62322398 555.0 + 0 ENSG00000227611.1 lincRNA LINC01074 2 OTTHUMG00000017016.1 +20691 chr13 HAVANA gene 62327988 62328384 397.0 + 0 ENSG00000232105.1 processed_pseudogene RPL32P28 1 OTTHUMG00000017018.1 pseudo_consens,overlapping_locus +20692 chr13 HAVANA gene 62323657 62328833 376.0 + 0 ENSG00000229307.1 lincRNA LINC00459 1 OTTHUMG00000017015.1 overlapping_locus +20693 chr13 HAVANA gene 62397645 62397916 272.0 + 0 ENSG00000276586.1 unprocessed_pseudogene AL356102.1 1 OTTHUMG00000187810.1 pseudo_consens +20694 chr13 HAVANA gene 62406058 62406916 859.0 - 0 ENSG00000271465.1 processed_pseudogene SQSTM1P1 1 OTTHUMG00000184733.1 pseudo_consens +20695 chr13 HAVANA gene 62672285 62732359 748.0 - 0 ENSG00000228669.1 lincRNA LINC00448 2 OTTHUMG00000017019.1 +20696 chr13 HAVANA gene 63034992 63097797 635.0 + 0 ENSG00000273550.1 lincRNA AL354810.1 2 OTTHUMG00000187307.1 +20697 chr13 HAVANA gene 63183101 63328094 693.0 - 0 ENSG00000227564.2 lincRNA LINC00376 2 OTTHUMG00000017020.2 +20698 chr13 HAVANA gene 63667681 63738018 669.0 - 0 ENSG00000231061.1 antisense LINC00395 1 OTTHUMG00000017022.1 +20699 chr13 HAVANA gene 63737511 63742804 912.0 + 0 ENSG00000274052.2 transcribed_unprocessed_pseudogene OR7E156P 2 OTTHUMG00000017021.3 overlapping_locus +20700 chr13 HAVANA gene 63746741 63751080 2034.0 + 0 ENSG00000237378.3 protein_coding AL445989.1 2 OTTHUMG00000017023.3 overlapping_locus +20701 chr13 HAVANA gene 63738111 63751083 981.0 + 0 ENSG00000285764.1 lincRNA AL445989.2 2 OTTHUMG00000193369.1 overlapping_locus +20702 chr13 ENSEMBL gene 63783801 63783904 104.0 + 0 ENSG00000202478.1 snRNA RNU6-81P 3 +20703 chr13 HAVANA gene 63811014 63811608 595.0 - 0 ENSG00000213232.2 processed_pseudogene PPP1R2P10 1 OTTHUMG00000017024.1 pseudo_consens +20704 chr13 HAVANA gene 63832361 63833531 1171.0 - 0 ENSG00000285566.1 protein_coding AL445238.1 2 OTTHUMG00000193370.1 +20705 chr13 HAVANA gene 63828840 63844125 3555.0 - 0 ENSG00000219926.11 transcribed_unprocessed_pseudogene OR7E104P 2 OTTHUMG00000017026.3 +20706 chr13 HAVANA gene 63975451 63976422 972.0 - 0 ENSG00000237849.1 processed_pseudogene NFYAP1 2 OTTHUMG00000017027.1 +20707 chr13 HAVANA gene 63851197 64076044 2448.0 - 0 ENSG00000227674.2 lincRNA LINC00355 2 OTTHUMG00000017028.2 +20708 chr13 HAVANA gene 64958097 64959396 1300.0 - 0 ENSG00000214269.3 processed_pseudogene LGMNP1 1 OTTHUMG00000017029.1 pseudo_consens +20709 chr13 HAVANA gene 65309855 65310953 869.0 - 0 ENSG00000214266.2 processed_pseudogene STARP1 1 OTTHUMG00000017030.1 pseudo_consens +20710 chr13 HAVANA gene 65787932 65788764 833.0 - 0 ENSG00000236565.3 processed_pseudogene HNRNPA3P5 1 OTTHUMG00000017031.2 pseudo_consens +20711 chr13 HAVANA gene 65866174 65878219 496.0 + 0 ENSG00000234767.1 lincRNA LINC01052 2 OTTHUMG00000017032.1 +20712 chr13 ENSEMBL gene 65966330 65966429 100.0 - 0 ENSG00000263581.1 miRNA MIR548X2 3 +20713 chr13 ENSEMBL gene 66218250 66218324 75.0 + 0 ENSG00000263561.1 miRNA MIR4704 3 +20714 chr13 HAVANA gene 66268997 66270458 1462.0 + 0 ENSG00000235737.1 processed_pseudogene TRIM60P19 2 OTTHUMG00000017033.1 +20715 chr13 HAVANA gene 66303871 66323561 532.0 + 0 ENSG00000234527.1 antisense PCDH9-AS1 1 OTTHUMG00000017034.1 +20716 chr13 ENSEMBL gene 66630715 66630776 62.0 - 0 ENSG00000238500.1 snRNA RNU7-87P 3 +20717 chr13 HAVANA gene 66825169 66915031 675.0 + 0 ENSG00000228842.3 antisense PCDH9-AS2 2 OTTHUMG00000017037.3 +20718 chr13 HAVANA gene 66977432 66985776 479.0 + 0 ENSG00000225263.1 antisense PCDH9-AS3 2 OTTHUMG00000017038.1 +20719 chr13 HAVANA gene 66990886 67002007 436.0 + 0 ENSG00000233840.1 antisense PCDH9-AS4 2 OTTHUMG00000017036.1 +20720 chr13 HAVANA gene 67121081 67156624 752.0 + 0 ENSG00000285588.1 antisense AL160254.1 2 OTTHUMG00000193033.1 +20721 chr13 HAVANA gene 66302834 67230445 30944.0 - 0 ENSG00000184226.14 protein_coding PCDH9 2 OTTHUMG00000017040.5 ncRNA_host +20722 chr13 HAVANA gene 67266845 67267706 862.0 - 0 ENSG00000214263.2 processed_pseudogene RPSAP53 1 OTTHUMG00000017039.1 pseudo_consens +20723 chr13 HAVANA gene 67372387 67379976 611.0 + 0 ENSG00000230040.1 lincRNA LINC00364 2 OTTHUMG00000017041.1 +20724 chr13 HAVANA gene 67790407 67790794 388.0 + 0 ENSG00000271287.1 processed_pseudogene BCRP9 1 OTTHUMG00000184867.1 pseudo_consens +20725 chr13 HAVANA gene 67831876 67832827 952.0 - 0 ENSG00000227969.1 processed_pseudogene NPM1P22 1 OTTHUMG00000017044.1 pseudo_consens +20726 chr13 HAVANA gene 67902208 67903221 1014.0 + 0 ENSG00000231667.2 unprocessed_pseudogene OR7E111P 1 OTTHUMG00000017042.2 pseudo_consens +20727 chr13 HAVANA gene 67910986 67911951 966.0 + 0 ENSG00000226537.2 unprocessed_pseudogene OR7E33P 2 OTTHUMG00000017043.2 +20728 chr13 HAVANA gene 68289679 68291280 1602.0 - 0 ENSG00000234765.1 processed_pseudogene ELL2P3 1 OTTHUMG00000017046.1 pseudo_consens +20729 chr13 HAVANA gene 68301605 68303302 927.0 - 0 ENSG00000229910.1 processed_pseudogene HNRNPA1P18 1 OTTHUMG00000017045.1 pseudo_consens +20730 chr13 HAVANA gene 68331338 68331613 276.0 - 0 ENSG00000236433.1 processed_pseudogene RPL37P21 1 OTTHUMG00000017047.1 pseudo_consens +20731 chr13 HAVANA gene 68634190 68634486 297.0 + 0 ENSG00000230405.1 processed_pseudogene RPS3AP52 1 OTTHUMG00000017048.1 pseudo_consens +20732 chr13 HAVANA gene 68654572 68655050 479.0 + 0 ENSG00000229824.1 processed_pseudogene RPL12P34 1 OTTHUMG00000017049.1 pseudo_consens +20733 chr13 ENSEMBL gene 68693804 68694081 278.0 - 0 ENSG00000243671.3 misc_RNA RN7SL761P 3 +20734 chr13 HAVANA gene 68861284 68885325 3614.0 - 0 ENSG00000281778.1 lincRNA LINC00550 2 OTTHUMG00000189544.1 +20735 chr13 HAVANA gene 68878380 68893573 461.0 + 0 ENSG00000280580.1 lincRNA LINC02342 2 OTTHUMG00000189545.1 +20736 chr13 HAVANA gene 68985058 68986064 1007.0 + 0 ENSG00000232380.1 processed_pseudogene ZDHHC20P4 1 OTTHUMG00000017050.1 pseudo_consens +20737 chr13 HAVANA gene 69101832 69102056 225.0 - 0 ENSG00000225501.1 processed_pseudogene SNRPFP3 1 OTTHUMG00000017051.1 pseudo_consens +20738 chr13 HAVANA gene 69222324 69322190 1882.0 + 0 ENSG00000235221.2 lincRNA LINC00383 2 OTTHUMG00000017053.3 +20739 chr13 HAVANA gene 69408216 69408735 520.0 - 0 ENSG00000224640.1 processed_pseudogene SRSF1P1 1 OTTHUMG00000017054.1 pseudo_consens +20740 chr13 ENSEMBL gene 69802940 69803041 102.0 + 0 ENSG00000207495.1 misc_RNA RNY3P10 3 +20741 chr13 HAVANA gene 69894101 69895085 985.0 - 0 ENSG00000232314.1 processed_pseudogene PSMC1P13 1 OTTHUMG00000017055.1 pseudo_consens,overlapping_locus +20742 chr13 HAVANA gene 69700594 70108493 4149.0 - 0 ENSG00000150361.11 protein_coding KLHL1 2 OTTHUMG00000017056.3 overlapping_locus +20743 chr13 HAVANA gene 70107213 70139429 1954.0 + 0 ENSG00000230223.6 antisense ATXN8OS 2 OTTHUMG00000017057.2 +20744 chr13 ENSEMBL gene 70459464 70459570 107.0 + 0 ENSG00000202433.1 snRNA RNU6-54P 3 +20745 chr13 HAVANA gene 70564267 70564437 171.0 - 0 ENSG00000276841.1 unprocessed_pseudogene AL445264.1 2 OTTHUMG00000187811.1 +20746 chr13 HAVANA gene 70923664 70924455 792.0 + 0 ENSG00000226554.1 processed_pseudogene MTCL1P1 1 OTTHUMG00000017058.1 pseudo_consens +20747 chr13 HAVANA gene 71015141 71168417 948.0 + 0 ENSG00000226846.1 lincRNA LINC00348 2 OTTHUMG00000017059.1 +20748 chr13 HAVANA gene 71296210 71297235 1026.0 + 0 ENSG00000225801.1 processed_pseudogene RABEPKP1 1 OTTHUMG00000017060.1 pseudo_consens +20749 chr13 HAVANA gene 71675067 71675469 403.0 + 0 ENSG00000236534.1 processed_pseudogene H3F3BP1 1 OTTHUMG00000017061.1 pseudo_consens +20750 chr13 HAVANA gene 71704181 71704655 475.0 + 0 ENSG00000237816.1 processed_pseudogene RPL21P109 1 OTTHUMG00000017062.2 pseudo_consens +20751 chr13 HAVANA gene 71845981 71846317 337.0 + 0 ENSG00000233460.1 processed_pseudogene RPL35AP31 1 OTTHUMG00000017064.1 pseudo_consens +20752 chr13 HAVANA gene 71437966 71867192 5389.0 - 0 ENSG00000276644.4 protein_coding DACH1 2 OTTHUMG00000017063.3 +20753 chr13 HAVANA gene 71913704 71914178 475.0 - 0 ENSG00000232881.2 processed_pseudogene RPS10P21 1 OTTHUMG00000017065.2 pseudo_consens +20754 chr13 ENSEMBL gene 72453902 72453967 66.0 - 0 ENSG00000212377.1 snoRNA RF00440 3 +20755 chr13 HAVANA gene 72460132 72460329 198.0 - 0 ENSG00000227952.2 processed_pseudogene RPL18AP17 2 OTTHUMG00000017066.2 +20756 chr13 ENSEMBL gene 72460519 72460601 83.0 - 0 ENSG00000251715.1 snoRNA RF00263 3 +20757 chr13 ENSEMBL gene 72567213 72567380 168.0 + 0 ENSG00000278113.1 misc_RNA RF02271 3 +20758 chr13 ENSEMBL gene 72586680 72586810 131.0 + 0 ENSG00000199282.1 snoRNA RF00411 3 +20759 chr13 HAVANA gene 72703693 72704138 446.0 + 0 ENSG00000226617.1 processed_pseudogene RPL21P110 1 OTTHUMG00000017067.1 pseudo_consens +20760 chr13 ENSEMBL gene 72706017 72706123 107.0 - 0 ENSG00000206922.1 snRNA RNU6-80P 3 +20761 chr13 HAVANA gene 72708357 72727687 2299.0 - 0 ENSG00000204899.5 protein_coding MZT1 2 OTTHUMG00000017069.1 +20762 chr13 HAVANA gene 72727749 72756198 3189.0 + 0 ENSG00000136122.15 protein_coding BORA 2 OTTHUMG00000017068.5 +20763 chr13 HAVANA gene 72752169 72782096 10835.0 - 0 ENSG00000083520.14 protein_coding DIS3 1 OTTHUMG00000017070.4 +20764 chr13 ENSEMBL gene 72881108 72881214 107.0 - 0 ENSG00000199381.1 snRNA RNU6-79P 3 +20765 chr13 HAVANA gene 72782059 73016461 4253.0 + 0 ENSG00000083535.15 protein_coding PIBF1 2 OTTHUMG00000017071.3 +20766 chr13 HAVANA gene 73036401 73036848 448.0 + 0 ENSG00000232041.1 processed_pseudogene PSMD10P3 1 OTTHUMG00000017072.1 pseudo_consens +20767 chr13 HAVANA gene 73054976 73077542 3893.0 + 0 ENSG00000102554.13 protein_coding KLF5 2 OTTHUMG00000017074.2 +20768 chr13 HAVANA gene 73100575 73100985 411.0 - 0 ENSG00000236972.2 processed_pseudogene FABP5P1 2 OTTHUMG00000017073.1 +20769 chr13 ENSEMBL gene 73112915 73113018 104.0 - 0 ENSG00000200267.1 snRNA RNU6-66P 3 +20770 chr13 ENSEMBL gene 73191528 73191667 140.0 + 0 ENSG00000201253.1 snRNA RNU4-10P 3 +20771 chr13 ENSEMBL gene 73227147 73227260 114.0 + 0 ENSG00000206697.1 misc_RNA RNY1P8 3 +20772 chr13 HAVANA gene 73399031 73399205 175.0 + 0 ENSG00000279754.1 TEC AL162376.1 2 OTTHUMG00000176037.1 +20773 chr13 HAVANA gene 73407768 73408352 585.0 - 0 ENSG00000229708.1 processed_pseudogene MARK2P12 1 OTTHUMG00000017075.1 pseudo_consens +20774 chr13 HAVANA gene 73564244 73588070 557.0 + 0 ENSG00000228295.1 lincRNA LINC00392 2 OTTHUMG00000017076.1 +20775 chr13 HAVANA gene 73413473 73661891 5026.0 - 0 ENSG00000224853.2 lincRNA LINC00393 2 OTTHUMG00000017077.2 +20776 chr13 HAVANA gene 73800074 73802203 2130.0 + 0 ENSG00000280348.1 TEC AL138713.1 2 OTTHUMG00000189131.1 +20777 chr13 HAVANA gene 73844683 73845130 448.0 - 0 ENSG00000279463.1 sense_intronic AL159972.1 2 OTTHUMG00000189132.1 +20778 chr13 HAVANA gene 73686089 73995056 10923.0 - 0 ENSG00000118922.17 protein_coding KLF12 2 OTTHUMG00000017078.2 +20779 chr13 HAVANA gene 74231457 74259976 3340.0 + 0 ENSG00000235532.1 lincRNA LINC00402 2 OTTHUMG00000017079.1 +20780 chr13 ENSEMBL gene 74289100 74289214 115.0 - 0 ENSG00000206617.1 misc_RNA RNY1P5 3 +20781 chr13 HAVANA gene 74377163 74377951 481.0 - 0 ENSG00000232701.1 processed_pseudogene RPL21P108 1 OTTHUMG00000017080.1 pseudo_consens +20782 chr13 HAVANA gene 74412957 74419115 2328.0 - 0 ENSG00000177596.1 lincRNA AL355390.1 2 OTTHUMG00000187427.1 +20783 chr13 HAVANA gene 74419158 74444735 1505.0 + 0 ENSG00000226240.2 lincRNA LINC00381 2 OTTHUMG00000017081.2 overlapping_locus +20784 chr13 HAVANA gene 74434538 74555515 880.0 + 0 ENSG00000281167.1 lincRNA AL355390.2 2 OTTHUMG00000189708.1 overlapping_locus +20785 chr13 HAVANA gene 74552503 74565445 3957.0 + 0 ENSG00000236678.7 lincRNA LINC00347 2 OTTHUMG00000017082.4 overlapping_locus +20786 chr13 HAVANA gene 74828553 74830080 1528.0 + 0 ENSG00000225944.1 processed_pseudogene RIOK3P1 1 OTTHUMG00000017083.1 pseudo_consens +20787 chr13 ENSEMBL gene 75109587 75109693 107.0 + 0 ENSG00000206812.1 snRNA RNU6-38P 3 +20788 chr13 HAVANA gene 75136154 75136940 787.0 + 0 ENSG00000226665.1 processed_pseudogene SSR1P2 1 OTTHUMG00000017084.1 pseudo_consens +20789 chr13 HAVANA gene 75237944 75240296 2353.0 - 0 ENSG00000214249.3 processed_pseudogene CTAGE11P 1 OTTHUMG00000017085.1 pseudo_consens +20790 chr13 HAVANA gene 75250480 75252012 387.0 + 0 ENSG00000223880.1 lincRNA LINC01078 2 OTTHUMG00000017086.1 +20791 chr13 HAVANA gene 75375511 75377294 425.0 - 0 ENSG00000225203.2 antisense AL139230.1 2 OTTHUMG00000017087.2 overlapping_locus +20792 chr13 HAVANA gene 75283503 75482114 7977.0 - 0 ENSG00000136111.13 protein_coding TBC1D4 2 OTTHUMG00000017088.4 overlapping_locus +20793 chr13 HAVANA gene 75525219 75549439 2897.0 - 0 ENSG00000188243.12 protein_coding COMMD6 1 OTTHUMG00000017089.4 +20794 chr13 HAVANA gene 75549480 75606020 1905.0 + 0 ENSG00000118939.17 protein_coding UCHL3 1 OTTHUMG00000017090.4 overlapping_locus +20795 chr13 HAVANA gene 75631271 75632135 865.0 + 0 ENSG00000228444.2 sense_intronic AL137244.1 2 OTTHUMG00000017091.2 overlapping_locus +20796 chr13 HAVANA gene 75604700 75635994 593.0 - 0 ENSG00000261105.5 antisense LMO7-AS1 2 OTTHUMG00000172803.1 +20797 chr13 HAVANA gene 75688556 75689197 642.0 - 0 ENSG00000230902.1 processed_pseudogene FAM204CP 1 OTTHUMG00000017092.1 pseudo_consens +20798 chr13 HAVANA gene 75549773 75807120 4178.0 + 0 ENSG00000261553.5 processed_transcript AL137782.1 2 OTTHUMG00000172802.1 overlapping_locus +20799 chr13 HAVANA gene 75620434 75859870 14367.0 + 0 ENSG00000136153.19 protein_coding LMO7 1 OTTHUMG00000017093.17 overlapping_locus +20800 chr13 HAVANA gene 75876886 75881127 321.0 + 0 ENSG00000223458.2 lincRNA LMO7DN-IT1 2 OTTHUMG00000017094.2 overlapping_locus +20801 chr13 HAVANA gene 75871038 75883811 1167.0 + 0 ENSG00000178734.5 lincRNA LMO7DN 2 OTTHUMG00000187426.1 overlapping_locus +20802 chr13 HAVANA gene 75932395 75935132 2738.0 - 0 ENSG00000261206.1 lincRNA LINC00561 2 OTTHUMG00000176038.1 +20803 chr13 HAVANA gene 76013023 76014501 277.0 - 0 ENSG00000224933.2 lincRNA LINC01034 2 OTTHUMG00000017095.2 +20804 chr13 ENSEMBL gene 76134931 76135225 295.0 + 0 ENSG00000243274.3 misc_RNA RN7SL571P 3 +20805 chr13 HAVANA gene 76552807 76846524 1772.0 - 0 ENSG00000285572.1 lincRNA AL136441.1 2 OTTHUMG00000192715.1 +20806 chr13 HAVANA gene 76833839 76846594 592.0 + 0 ENSG00000284809.1 lincRNA AL365394.1 2 OTTHUMG00000192617.1 +20807 chr13 HAVANA gene 76880166 76886390 6225.0 - 0 ENSG00000178695.5 protein_coding KCTD12 2 OTTHUMG00000017096.3 +20808 chr13 HAVANA gene 76887551 76891135 3585.0 + 0 ENSG00000278727.1 lincRNA AC000403.1 2 OTTHUMG00000187228.1 +20809 chr13 HAVANA gene 76928066 76928836 477.0 + 0 ENSG00000118903.6 processed_pseudogene BTF3P11 1 OTTHUMG00000017097.2 pseudo_consens +20810 chr13 HAVANA gene 76948497 76958642 2177.0 + 0 ENSG00000102794.9 protein_coding ACOD1 2 OTTHUMG00000017098.1 +20811 chr13 HAVANA gene 76981175 76981916 742.0 - 0 ENSG00000233873.1 processed_pseudogene RPL7P44 1 OTTHUMG00000017102.1 pseudo_consens +20812 chr13 HAVANA gene 76984868 76987943 3076.0 + 0 ENSG00000228002.2 processed_pseudogene DHX9P1 1 OTTHUMG00000017101.2 pseudo_consens +20813 chr13 HAVANA gene 76990660 77019143 22814.0 + 0 ENSG00000102805.14 protein_coding CLN5 2 OTTHUMG00000017100.7 overlapping_locus +20814 chr13 HAVANA gene 76992598 77027195 7082.0 - 0 ENSG00000005812.10 protein_coding FBXL3 1 OTTHUMG00000017099.5 +20815 chr13 HAVANA gene 77027944 77028482 539.0 + 0 ENSG00000274898.1 lincRNA AC001226.1 2 OTTHUMG00000187232.1 +20816 chr13 HAVANA gene 77080511 77081190 428.0 - 0 ENSG00000229521.2 sense_intronic MYCBP2-AS2 2 OTTHUMG00000017103.2 overlapping_locus +20817 chr13 HAVANA gene 76992078 77129589 6145.0 + 0 ENSG00000283208.1 protein_coding AC001226.2 2 OTTHUMG00000191724.1 overlapping_locus +20818 chr13 HAVANA gene 77026767 77129717 4087.0 + 0 ENSG00000236051.7 processed_transcript MYCBP2-AS1 2 OTTHUMG00000017104.3 overlapping_locus +20819 chr13 HAVANA gene 77044655 77327050 15945.0 - 0 ENSG00000005810.17 protein_coding MYCBP2 2 OTTHUMG00000017105.4 overlapping_locus +20820 chr13 HAVANA gene 77417821 77422847 655.0 + 0 ENSG00000285714.1 lincRNA AL159158.1 2 OTTHUMG00000193200.1 +20821 chr13 HAVANA gene 77599755 77606551 570.0 - 0 ENSG00000224347.6 antisense SCEL-AS1 2 OTTHUMG00000017106.2 +20822 chr13 ENSEMBL gene 77623372 77623472 101.0 + 0 ENSG00000206800.1 misc_RNA RNY3P7 3 +20823 chr13 HAVANA gene 77535674 77645263 4205.0 + 0 ENSG00000136155.16 protein_coding SCEL 2 OTTHUMG00000017107.3 ncRNA_host +20824 chr13 HAVANA gene 77659413 77659664 252.0 + 0 ENSG00000227922.1 processed_pseudogene SPTLC1P5 1 OTTHUMG00000017109.1 pseudo_consens +20825 chr13 HAVANA gene 77661376 77662626 1251.0 - 0 ENSG00000285746.1 unprocessed_pseudogene AL450447.1 2 OTTHUMG00000193393.1 +20826 chr13 ENSEMBL gene 77698012 77698116 105.0 - 0 ENSG00000266325.1 miRNA MIR3665 3 +20827 chr13 HAVANA gene 77697854 77764242 4133.0 + 0 ENSG00000139737.21 protein_coding SLAIN1 1 OTTHUMG00000017110.10 +20828 chr13 HAVANA gene 77828222 77833950 601.0 + 0 ENSG00000225579.1 lincRNA EDNRB-AS1 2 OTTHUMG00000017113.1 +20829 chr13 HAVANA gene 77939162 77944874 902.0 - 0 ENSG00000233379.1 lincRNA AL139002.1 1 OTTHUMG00000017114.1 +20830 chr13 ENSEMBL gene 77947497 77947772 276.0 - 0 ENSG00000243035.3 misc_RNA RN7SL810P 3 +20831 chr13 HAVANA gene 77895481 77975529 5607.0 - 0 ENSG00000136160.15 protein_coding EDNRB 1 OTTHUMG00000017111.11 ncRNA_host +20832 chr13 HAVANA gene 77989372 77990646 546.0 - 0 ENSG00000236133.1 lincRNA LINC01069 1 OTTHUMG00000017112.1 +20833 chr13 HAVANA gene 78012883 78053595 670.0 + 0 ENSG00000229249.6 lincRNA LINC00446 2 OTTHUMG00000017115.2 overlapping_locus +20834 chr13 HAVANA gene 78275720 78277514 342.0 - 0 ENSG00000235625.1 lincRNA AL138957.1 1 OTTHUMG00000017117.1 +20835 chr13 HAVANA gene 78285838 78286288 451.0 + 0 ENSG00000271386.1 processed_pseudogene SRGNP1 1 OTTHUMG00000184868.1 pseudo_consens,overlapping_locus +20836 chr13 ENSEMBL gene 78355227 78355328 102.0 - 0 ENSG00000200686.1 misc_RNA RNY3P3 3 +20837 chr13 HAVANA gene 78422823 78423192 370.0 + 0 ENSG00000229865.1 processed_pseudogene RPL31P54 1 OTTHUMG00000017118.1 pseudo_consens,overlapping_locus +20838 chr13 HAVANA gene 78488182 78488513 332.0 + 0 ENSG00000224686.1 processed_pseudogene ELOCP23 1 OTTHUMG00000017120.1 pseudo_consens,overlapping_locus +20839 chr13 HAVANA gene 78596129 78599619 3491.0 + 0 ENSG00000271776.1 antisense AL445209.1 2 OTTHUMG00000185376.1 overlapping_locus +20840 chr13 HAVANA gene 78598362 78603560 4547.0 - 0 ENSG00000152192.7 protein_coding POU4F1 2 OTTHUMG00000017119.4 +20841 chr13 HAVANA gene 77919689 78617328 8790.0 + 0 ENSG00000234377.7 antisense RNF219-AS1 2 OTTHUMG00000185746.4 overlapping_locus +20842 chr13 HAVANA gene 78614291 78659179 3529.0 - 0 ENSG00000152193.7 protein_coding RNF219 2 OTTHUMG00000017122.1 +20843 chr13 HAVANA gene 78761175 78761651 477.0 + 0 ENSG00000237109.1 processed_pseudogene RPL21P111 1 OTTHUMG00000017125.1 pseudo_consens +20844 chr13 HAVANA gene 78787319 78792307 376.0 - 0 ENSG00000225427.1 lincRNA LINC00331 2 OTTHUMG00000017124.1 +20845 chr13 HAVANA gene 78849231 78851208 1658.0 + 0 ENSG00000215357.2 processed_pseudogene HSPD1P8 1 OTTHUMG00000017123.1 pseudo_consens +20846 chr13 HAVANA gene 78908919 78910542 1624.0 + 0 ENSG00000230584.1 processed_pseudogene CCT5P2 1 OTTHUMG00000017126.1 pseudo_consens +20847 chr13 HAVANA gene 79090783 79094119 464.0 + 0 ENSG00000236277.1 processed_pseudogene NIPA2P5 2 OTTHUMG00000017127.1 +20848 chr13 HAVANA gene 79166119 79166885 767.0 + 0 ENSG00000226670.1 processed_pseudogene BCAS2P3 1 OTTHUMG00000017128.1 pseudo_consens +20849 chr13 ENSEMBL gene 79389534 79389631 98.0 - 0 ENSG00000252496.1 rRNA_pseudogene RNA5SP33 3 +20850 chr13 HAVANA gene 79311824 79406477 10122.0 - 0 ENSG00000139746.15 protein_coding RBM26 1 OTTHUMG00000017133.8 +20851 chr13 HAVANA gene 79406309 79424328 3747.0 + 0 ENSG00000227354.6 antisense RBM26-AS1 2 OTTHUMG00000017131.2 +20852 chr13 HAVANA gene 79477364 79481231 431.0 - 0 ENSG00000232132.1 antisense NDFIP2-AS1 2 OTTHUMG00000017134.1 +20853 chr13 HAVANA gene 79481124 79556075 4831.0 + 0 ENSG00000102471.14 protein_coding NDFIP2 1 OTTHUMG00000017136.9 +20854 chr13 HAVANA gene 79566727 79571436 724.0 + 0 ENSG00000227676.3 lincRNA LINC01068 2 OTTHUMG00000017135.3 +20855 chr13 HAVANA gene 79637433 79667344 1287.0 + 0 ENSG00000285902.1 lincRNA AL136442.1 2 OTTHUMG00000193152.1 +20856 chr13 HAVANA gene 79804418 79805685 428.0 + 0 ENSG00000229011.1 lincRNA LINC01038 1 OTTHUMG00000017137.1 +20857 chr13 HAVANA gene 79872586 79917944 890.0 + 0 ENSG00000229175.1 lincRNA LINC00382 2 OTTHUMG00000017139.1 +20858 chr13 HAVANA gene 80011077 80028283 2242.0 + 0 ENSG00000281721.1 lincRNA LINC01080 2 OTTHUMG00000189563.1 +20859 chr13 HAVANA gene 79941531 80074640 10285.0 - 0 ENSG00000284196.2 processed_transcript AL158064.1 2 OTTHUMG00000191996.2 +20860 chr13 HAVANA gene 80115733 80134368 5485.0 - 0 ENSG00000285684.1 lincRNA AL137781.1 2 OTTHUMG00000192902.1 +20861 chr13 HAVANA gene 80335976 80340951 3038.0 - 0 ENSG00000136158.11 protein_coding SPRY2 2 OTTHUMG00000017140.2 +20862 chr13 ENSEMBL gene 80369426 80369534 109.0 - 0 ENSG00000202398.1 snRNA RNU6-61P 3 +20863 chr13 HAVANA gene 80619098 80620067 970.0 - 0 ENSG00000227862.1 processed_pseudogene HNRNPA1P31 1 OTTHUMG00000017141.1 pseudo_consens +20864 chr13 HAVANA gene 80654755 80657027 2273.0 + 0 ENSG00000226683.2 processed_pseudogene PWWP2AP1 2 OTTHUMG00000017142.2 +20865 chr13 HAVANA gene 80888348 80888867 520.0 + 0 ENSG00000231222.1 processed_pseudogene ARF4P4 1 OTTHUMG00000017143.1 pseudo_consens +20866 chr13 HAVANA gene 81043670 81044442 657.0 + 0 ENSG00000229246.1 lincRNA LINC00377 2 OTTHUMG00000017144.1 +20867 chr13 HAVANA gene 81114866 81115295 430.0 - 0 ENSG00000270415.1 processed_pseudogene DPPA3P3 1 OTTHUMG00000184734.1 pseudo_consens +20868 chr13 HAVANA gene 81225865 81226983 1119.0 - 0 ENSG00000260094.1 lincRNA LINC00564 2 OTTHUMG00000176051.1 +20869 chr13 ENSEMBL gene 81265747 81265837 91.0 + 0 ENSG00000222486.1 snRNA RNU6-77P 3 +20870 chr13 HAVANA gene 81272891 81273170 280.0 + 0 ENSG00000237148.1 processed_pseudogene HIGD1AP2 1 OTTHUMG00000017145.1 pseudo_consens,overlapping_locus +20871 chr13 HAVANA gene 81250438 81302407 382.0 + 0 ENSG00000229309.2 lincRNA AL353633.1 2 OTTHUMG00000017146.2 ncRNA_host,overlapping_locus +20872 chr13 HAVANA gene 81689911 81691072 1162.0 + 0 ENSG00000214182.5 transcribed_processed_pseudogene PTMAP5 2 OTTHUMG00000017147.4 +20873 chr13 HAVANA gene 82823131 82824136 1006.0 + 0 ENSG00000237099.1 processed_pseudogene GYG1P2 1 OTTHUMG00000017148.1 pseudo_consens +20874 chr13 HAVANA gene 83145540 83145903 364.0 + 0 ENSG00000270400.1 processed_pseudogene AL512782.1 1 OTTHUMG00000184873.1 pseudo_consens +20875 chr13 ENSEMBL gene 83298071 83298167 97.0 - 0 ENSG00000222791.1 snRNA RNU6-67P 3 +20876 chr13 HAVANA gene 83877205 83882393 5189.0 - 0 ENSG00000178235.7 protein_coding SLITRK1 2 OTTHUMG00000017149.1 +20877 chr13 HAVANA gene 83877891 83892570 1223.0 + 0 ENSG00000285680.1 antisense AL355481.1 2 OTTHUMG00000192764.1 +20878 chr13 HAVANA gene 83907301 83907781 481.0 - 0 ENSG00000215037.2 processed_pseudogene VENTXP2 2 OTTHUMG00000017150.1 +20879 chr13 HAVANA gene 84020327 84020762 436.0 + 0 ENSG00000224188.1 processed_pseudogene UBE2D3P4 1 OTTHUMG00000017151.1 pseudo_consens +20880 chr13 HAVANA gene 84063106 84069408 1042.0 + 0 ENSG00000285742.1 lincRNA AL445604.1 2 OTTHUMG00000193063.1 +20881 chr13 HAVANA gene 84520103 84521568 1466.0 + 0 ENSG00000228597.1 processed_pseudogene MTND4P1 2 OTTHUMG00000017153.1 +20882 chr13 HAVANA gene 84521725 84523915 1800.0 + 0 ENSG00000232447.1 processed_pseudogene MTND5P3 2 OTTHUMG00000017152.1 +20883 chr13 HAVANA gene 84562364 84563236 613.0 + 0 ENSG00000233349.1 lincRNA LINC00333 2 OTTHUMG00000017154.1 +20884 chr13 HAVANA gene 85065087 85078920 601.0 - 0 ENSG00000226370.1 lincRNA LINC00375 2 OTTHUMG00000017155.1 +20885 chr13 HAVANA gene 85363601 85544570 911.0 + 0 ENSG00000226317.2 lincRNA LINC00351 2 OTTHUMG00000017156.2 +20886 chr13 HAVANA gene 85693937 85783203 1262.0 - 0 ENSG00000285834.1 lincRNA AL356413.1 2 OTTHUMG00000192801.1 +20887 chr13 HAVANA gene 85792787 85806683 4474.0 - 0 ENSG00000184564.9 protein_coding SLITRK6 2 OTTHUMG00000017157.4 +20888 chr13 HAVANA gene 85837126 85837532 407.0 - 0 ENSG00000278580.1 unprocessed_pseudogene AL162373.1 2 OTTHUMG00000187812.1 +20889 chr13 HAVANA gene 85968999 85969533 535.0 + 0 ENSG00000228241.1 processed_pseudogene MOB1AP1 1 OTTHUMG00000017158.1 pseudo_consens +20890 chr13 HAVANA gene 86060813 86170890 194.0 + 0 ENSG00000232252.1 lincRNA AL354994.1 2 OTTHUMG00000017159.1 +20891 chr13 HAVANA gene 86266842 86266926 85.0 - 0 ENSG00000283371.1 unprocessed_pseudogene FO624990.1 2 OTTHUMG00000191758.1 +20892 chr13 HAVANA gene 86275493 86277262 1455.0 + 0 ENSG00000277914.1 processed_pseudogene DDX6P2 1 OTTHUMG00000017160.2 pseudo_consens +20893 chr13 HAVANA gene 86725500 86726053 554.0 + 0 ENSG00000231879.1 processed_pseudogene TXNL1P1 1 OTTHUMG00000017161.1 pseudo_consens +20894 chr13 HAVANA gene 86909586 86937108 776.0 + 0 ENSG00000233528.4 lincRNA LINC00430 2 OTTHUMG00000017162.5 +20895 chr13 HAVANA gene 87219004 87219269 266.0 + 0 ENSG00000228074.1 processed_pseudogene UBBP5 1 OTTHUMG00000017163.1 pseudo_consens +20896 chr13 HAVANA gene 87379472 87380258 458.0 - 0 ENSG00000228473.1 processed_pseudogene LIN28AP2 1 OTTHUMG00000017164.1 pseudo_consens +20897 chr13 HAVANA gene 87427200 87447235 666.0 - 0 ENSG00000232636.2 lincRNA AL360267.1 1 OTTHUMG00000017165.2 overlapping_locus +20898 chr13 HAVANA gene 87423493 87458407 407.0 + 0 ENSG00000285699.1 lincRNA AL360267.2 2 OTTHUMG00000193327.1 +20899 chr13 HAVANA gene 87607907 87609234 1328.0 - 0 ENSG00000272515.1 lincRNA AL355578.1 2 OTTHUMG00000185757.1 overlapping_locus +20900 chr13 ENSEMBL gene 87618665 87618740 76.0 - 0 ENSG00000266052.1 miRNA MIR4500 3 +20901 chr13 HAVANA gene 87427214 87671259 3273.0 - 0 ENSG00000228824.6 lincRNA MIR4500HG 2 OTTHUMG00000017166.3 ncRNA_host,overlapping_locus +20902 chr13 HAVANA gene 87672615 87696272 21103.0 + 0 ENSG00000165300.7 protein_coding SLITRK5 2 OTTHUMG00000017167.4 +20903 chr13 HAVANA gene 87765752 87765881 130.0 - 0 ENSG00000277640.1 processed_pseudogene AL445647.2 1 OTTHUMG00000187822.1 pseudo_consens +20904 chr13 HAVANA gene 87801036 87803808 634.0 - 0 ENSG00000223404.3 lincRNA LINC00397 2 OTTHUMG00000017169.3 +20905 chr13 HAVANA gene 87807634 87811232 3599.0 - 0 ENSG00000272046.1 lincRNA AL445647.1 2 OTTHUMG00000185728.1 +20906 chr13 HAVANA gene 87890172 87892472 2301.0 - 0 ENSG00000232204.1 processed_pseudogene TET1P1 1 OTTHUMG00000017168.1 pseudo_consens +20907 chr13 HAVANA gene 88142867 88236082 561.0 + 0 ENSG00000231019.1 lincRNA AL354896.1 2 OTTHUMG00000155300.2 +20908 chr13 HAVANA gene 88236547 88236969 423.0 - 0 ENSG00000225289.1 processed_pseudogene RPL29P29 1 OTTHUMG00000017170.2 pseudo_consens +20909 chr13 HAVANA gene 88472151 88477267 3685.0 - 0 ENSG00000285811.1 lincRNA AL355677.1 2 OTTHUMG00000192870.1 +20910 chr13 HAVANA gene 88540864 88545509 1055.0 + 0 ENSG00000229443.1 lincRNA LINC00433 2 OTTHUMG00000017171.1 +20911 chr13 HAVANA gene 88571654 88572312 659.0 + 0 ENSG00000283130.1 processed_pseudogene AL445984.1 2 OTTHUMG00000191762.1 +20912 chr13 HAVANA gene 88626853 88630397 1599.0 + 0 ENSG00000261666.1 lincRNA LINC00560 2 OTTHUMG00000176053.1 +20913 chr13 HAVANA gene 88978447 88978785 339.0 - 0 ENSG00000233211.2 processed_pseudogene GRPEL2P1 1 OTTHUMG00000017172.2 pseudo_consens +20914 chr13 HAVANA gene 89214847 89236890 946.0 - 0 ENSG00000232225.6 lincRNA LINC01047 2 OTTHUMG00000017173.2 +20915 chr13 HAVANA gene 89248818 89250100 1283.0 - 0 ENSG00000227247.1 processed_pseudogene TRIM60P13 1 OTTHUMG00000017174.1 pseudo_consens +20916 chr13 HAVANA gene 89273203 89280240 734.0 + 0 ENSG00000234660.1 lincRNA LINC00440 1 OTTHUMG00000017175.1 +20917 chr13 HAVANA gene 89361160 89363224 2065.0 - 0 ENSG00000225530.1 processed_pseudogene SP3P 2 OTTHUMG00000017176.1 +20918 chr13 HAVANA gene 89477608 89500509 666.0 - 0 ENSG00000226037.1 lincRNA LINC01040 2 OTTHUMG00000017177.1 +20919 chr13 HAVANA gene 89551233 89552389 330.0 + 0 ENSG00000271395.1 lincRNA LINC02336 2 OTTHUMG00000184176.1 +20920 chr13 HAVANA gene 89548691 89553804 685.0 - 0 ENSG00000236176.2 lincRNA LINC00353 2 OTTHUMG00000017179.1 +20921 chr13 HAVANA gene 89833157 89833941 785.0 - 0 ENSG00000234227.1 processed_pseudogene RPL7L1P1 1 OTTHUMG00000017180.1 pseudo_consens +20922 chr13 ENSEMBL gene 89837170 89837237 68.0 + 0 ENSG00000200733.1 snoRNA RF00212 3 +20923 chr13 HAVANA gene 89991831 89992878 1048.0 + 0 ENSG00000215418.2 processed_pseudogene PEX12P1 1 OTTHUMG00000017181.1 pseudo_consens +20924 chr13 HAVANA gene 90060247 90119719 3867.0 - 0 ENSG00000261446.3 lincRNA LINC00559 2 OTTHUMG00000176057.3 +20925 chr13 ENSEMBL gene 90135712 90135841 130.0 - 0 ENSG00000252696.1 rRNA_pseudogene RNA5SP34 3 +20926 chr13 HAVANA gene 90170866 90171799 934.0 + 0 ENSG00000235879.1 processed_pseudogene FAR1P1 1 OTTHUMG00000017182.1 pseudo_consens +20927 chr13 ENSEMBL gene 90231182 90231277 96.0 + 0 ENSG00000283783.1 miRNA MIR622 3 +20928 chr13 HAVANA gene 90230384 90231682 1299.0 + 0 ENSG00000224419.1 processed_pseudogene KRT18P27 1 OTTHUMG00000017183.1 pseudo_consens +20929 chr13 HAVANA gene 90493287 90535080 742.0 + 0 ENSG00000234384.1 lincRNA LINC01049 2 OTTHUMG00000017184.1 +20930 chr13 ENSEMBL gene 90781766 90781869 104.0 - 0 ENSG00000251753.1 snRNA RNU6-75P 3 +20931 chr13 HAVANA gene 90890954 90926597 2018.0 - 0 ENSG00000231674.1 lincRNA LINC00410 2 OTTHUMG00000017185.1 +20932 chr13 HAVANA gene 91023732 91023954 223.0 - 0 ENSG00000227983.1 processed_pseudogene BRK1P2 1 OTTHUMG00000017186.1 pseudo_consens +20933 chr13 HAVANA gene 91087254 91089593 353.0 - 0 ENSG00000234625.1 lincRNA LINC00380 1 OTTHUMG00000017187.1 +20934 chr13 HAVANA gene 91127613 91131407 545.0 - 0 ENSG00000229557.1 lincRNA LINC00379 2 OTTHUMG00000017188.1 +20935 chr13 HAVANA gene 91272081 91272577 497.0 - 0 ENSG00000214178.3 processed_pseudogene PPIAP23 1 OTTHUMG00000017189.1 pseudo_consens +20936 chr13 ENSEMBL gene 91350605 91350688 84.0 + 0 ENSG00000284536.1 miRNA MIR17 3 +20937 chr13 ENSEMBL gene 91350751 91350821 71.0 + 0 ENSG00000283815.1 miRNA MIR18A 3 +20938 chr13 ENSEMBL gene 91350891 91350972 82.0 + 0 ENSG00000284204.1 miRNA MIR19A 3 +20939 chr13 ENSEMBL gene 91351065 91351135 71.0 + 0 ENSG00000283762.1 miRNA MIR20A 3 +20940 chr13 ENSEMBL gene 91351192 91351278 87.0 + 0 ENSG00000284375.1 miRNA MIR19B1 3 +20941 chr13 ENSEMBL gene 91351314 91351391 78.0 + 0 ENSG00000283705.1 miRNA MIR92A1 3 +20942 chr13 HAVANA gene 91347820 91354579 3492.0 + 0 ENSG00000215417.12 processed_transcript MIR17HG 2 OTTHUMG00000017195.3 ncRNA_host +20943 chr13 HAVANA gene 91485793 91486870 1078.0 + 0 ENSG00000282864.1 TEC AL356118.1 2 OTTHUMG00000191490.1 overlapping_locus +20944 chr13 HAVANA gene 91994518 91996523 2006.0 + 0 ENSG00000282997.1 sense_intronic AL162456.1 2 OTTHUMG00000191491.1 +20945 chr13 ENSEMBL gene 92059844 92059969 126.0 + 0 ENSG00000252508.1 snRNA RNU4ATAC3P 3 +20946 chr13 HAVANA gene 92180715 92180885 171.0 - 0 ENSG00000229287.1 processed_pseudogene FABP5P4 1 OTTHUMG00000017196.2 pseudo_consens +20947 chr13 HAVANA gene 92239835 92241951 2117.0 - 0 ENSG00000282865.1 TEC AL157815.1 2 OTTHUMG00000191492.1 +20948 chr13 HAVANA gene 92339794 92340603 401.0 - 0 ENSG00000232885.1 antisense GPC5-AS2 1 OTTHUMG00000017197.1 +20949 chr13 HAVANA gene 92446470 92449056 2587.0 + 0 ENSG00000283097.1 TEC AL159152.1 2 OTTHUMG00000191493.1 overlapping_locus +20950 chr13 ENSEMBL gene 92490163 92490220 58.0 + 0 ENSG00000263741.1 miRNA MIR548AS 3 +20951 chr13 HAVANA gene 92484606 92510094 658.0 + 0 ENSG00000236240.1 sense_intronic GPC5-IT1 2 OTTHUMG00000017198.1 ncRNA_host,overlapping_locus +20952 chr13 HAVANA gene 92658994 92659227 234.0 - 0 ENSG00000282993.1 TEC AL356737.1 2 OTTHUMG00000191494.1 +20953 chr13 HAVANA gene 92701389 92721614 461.0 - 0 ENSG00000235984.5 antisense GPC5-AS1 2 OTTHUMG00000017199.1 +20954 chr13 HAVANA gene 91398607 92873682 3544.0 + 0 ENSG00000179399.14 protein_coding GPC5 2 OTTHUMG00000017200.3 ncRNA_host,overlapping_locus +20955 chr13 HAVANA gene 93056657 93057926 210.0 + 0 ENSG00000232849.1 lincRNA LINC00363 2 OTTHUMG00000017201.1 +20956 chr13 HAVANA gene 93226612 93227317 706.0 - 0 ENSG00000278177.1 antisense AL354811.1 2 OTTHUMG00000187253.1 +20957 chr13 HAVANA gene 93394977 93395855 879.0 - 0 ENSG00000235784.2 processed_pseudogene HNRNPA1P29 1 OTTHUMG00000017202.2 pseudo_consens +20958 chr13 HAVANA gene 93818424 93836144 587.0 - 0 ENSG00000224394.1 antisense GPC6-AS2 2 OTTHUMG00000017203.1 +20959 chr13 ENSEMBL gene 94025470 94025598 129.0 - 0 ENSG00000212559.1 rRNA_pseudogene RNA5SP35 3 +20960 chr13 HAVANA gene 94154193 94187991 698.0 - 0 ENSG00000236520.2 antisense GPC6-AS1 2 OTTHUMG00000017204.2 +20961 chr13 HAVANA gene 93226842 94407401 6468.0 + 0 ENSG00000183098.10 protein_coding GPC6 2 OTTHUMG00000017205.4 +20962 chr13 HAVANA gene 94436808 94479682 7543.0 - 0 ENSG00000080166.15 protein_coding DCT 2 OTTHUMG00000017206.7 +20963 chr13 HAVANA gene 94574051 94596257 2589.0 - 0 ENSG00000088451.10 protein_coding TGDS 2 OTTHUMG00000046308.3 +20964 chr13 HAVANA gene 94601903 94634645 8822.0 + 0 ENSG00000152749.7 protein_coding GPR180 2 OTTHUMG00000017207.3 +20965 chr13 ENSEMBL gene 94651397 94651529 133.0 - 0 ENSG00000222129.1 rRNA_pseudogene RNA5SP36 3 +20966 chr13 ENSEMBL gene 94699223 94699502 280.0 - 0 ENSG00000274168.1 misc_RNA RN7SL585P 3 +20967 chr13 HAVANA gene 94699694 94702862 1844.0 - 0 ENSG00000238230.1 lincRNA LINC00391 2 OTTHUMG00000017212.1 +20968 chr13 HAVANA gene 94709622 94712399 2778.0 - 0 ENSG00000125285.5 protein_coding SOX21 2 OTTHUMG00000017209.4 retrogene +20969 chr13 HAVANA gene 94712716 94716246 3287.0 + 0 ENSG00000227640.2 lincRNA SOX21-AS1 2 OTTHUMG00000017213.2 +20970 chr13 HAVANA gene 94757451 94759272 1822.0 - 0 ENSG00000235768.1 processed_pseudogene BRD7P5 1 OTTHUMG00000017211.1 pseudo_consens +20971 chr13 HAVANA gene 94760553 94761015 463.0 - 0 ENSG00000237924.1 processed_pseudogene RPL21P112 1 OTTHUMG00000017210.1 pseudo_consens +20972 chr13 HAVANA gene 94960041 94961319 1279.0 + 0 ENSG00000260962.1 lincRNA LINC00557 2 OTTHUMG00000176061.1 +20973 chr13 ENSEMBL gene 95019235 95019336 102.0 + 0 ENSG00000252335.1 snRNA RNU6-62P 3 +20974 chr13 HAVANA gene 95019829 95301475 8635.0 - 0 ENSG00000125257.14 protein_coding ABCC4 2 OTTHUMG00000017216.10 +20975 chr13 ENSEMBL gene 95310830 95310955 126.0 - 0 ENSG00000223298.1 misc_RNA RNY3P8 3 +20976 chr13 ENSEMBL gene 95336106 95336201 96.0 - 0 ENSG00000200211.1 misc_RNA RNY4P27 3 +20977 chr13 HAVANA gene 95394049 95394454 406.0 + 0 ENSG00000271492.1 processed_pseudogene MEMO1P5 1 OTTHUMG00000184874.1 pseudo_consens +20978 chr13 HAVANA gene 95479444 95533910 895.0 - 0 ENSG00000223392.1 antisense CLDN10-AS1 2 OTTHUMG00000017220.1 +20979 chr13 HAVANA gene 95433604 95579759 3380.0 + 0 ENSG00000134873.9 protein_coding CLDN10 2 OTTHUMG00000017217.3 +20980 chr13 HAVANA gene 95578202 95644703 8470.0 - 0 ENSG00000134874.17 protein_coding DZIP1 2 OTTHUMG00000017224.7 +20981 chr13 HAVANA gene 95648733 95676925 3010.0 - 0 ENSG00000247400.3 lincRNA DNAJC3-DT 1 OTTHUMG00000166152.2 +20982 chr13 HAVANA gene 95692538 95693972 1142.0 + 0 ENSG00000229622.1 processed_pseudogene MTND5P2 2 OTTHUMG00000017222.1 overlapping_locus +20983 chr13 HAVANA gene 95693983 95694495 513.0 - 0 ENSG00000227714.1 processed_pseudogene MTND6P18 2 OTTHUMG00000017223.1 +20984 chr13 HAVANA gene 95694569 95695705 1137.0 + 0 ENSG00000232373.2 processed_pseudogene MTCYBP3 2 OTTHUMG00000017221.2 overlapping_locus +20985 chr13 HAVANA gene 95744726 95745765 1040.0 + 0 ENSG00000276809.1 sense_intronic AL138955.1 2 OTTHUMG00000188627.1 +20986 chr13 HAVANA gene 95677139 95794989 5591.0 + 0 ENSG00000102580.14 protein_coding DNAJC3 1 OTTHUMG00000017227.4 overlapping_locus +20987 chr13 HAVANA gene 95809310 95809607 298.0 - 0 ENSG00000226977.1 processed_pseudogene HMGN1P24 1 OTTHUMG00000017228.1 pseudo_consens,overlapping_locus +20988 chr13 HAVANA gene 95801580 96053482 8105.0 - 0 ENSG00000102595.19 protein_coding UGGT2 2 OTTHUMG00000017230.4 overlapping_locus +20989 chr13 ENSEMBL gene 96169545 96169847 303.0 + 0 ENSG00000242614.3 misc_RNA RN7SL164P 3 +20990 chr13 ENSEMBL gene 96427229 96427292 64.0 + 0 ENSG00000283487.1 miRNA MIR4501 3 +20991 chr13 HAVANA gene 96573659 96574499 841.0 + 0 ENSG00000233273.1 processed_pseudogene AMMECR1LP1 1 OTTHUMG00000017231.1 pseudo_consens,overlapping_locus +20992 chr13 HAVANA gene 96090839 96839562 7806.0 + 0 ENSG00000185352.8 protein_coding HS6ST3 2 OTTHUMG00000017232.3 ncRNA_host,overlapping_locus +20993 chr13 HAVANA gene 96883842 96885821 1980.0 - 0 ENSG00000235137.2 processed_pseudogene HSP90AB6P 1 OTTHUMG00000017233.1 pseudo_consens +20994 chr13 ENSEMBL gene 96949249 96949533 285.0 - 0 ENSG00000222472.1 misc_RNA RN7SKP7 3 +20995 chr13 HAVANA gene 96948018 96949584 1370.0 + 0 ENSG00000272329.1 lincRNA AL353581.1 2 OTTHUMG00000185760.1 +20996 chr13 HAVANA gene 96941281 96984172 2025.0 - 0 ENSG00000234267.3 transcribed_processed_pseudogene TULP3P1 1 OTTHUMG00000017234.2 pseudo_consens,overlapping_locus +20997 chr13 HAVANA gene 96985719 96994730 2659.0 - 0 ENSG00000165621.8 protein_coding OXGR1 2 OTTHUMG00000017236.6 +20998 chr13 HAVANA gene 97172469 97179622 692.0 - 0 ENSG00000233124.1 lincRNA LINC00456 1 OTTHUMG00000017237.1 +20999 chr13 ENSEMBL gene 97362972 97363101 130.0 - 0 ENSG00000202290.1 rRNA_pseudogene RNA5SP37 3 +21000 chr13 HAVANA gene 97221434 97394120 4908.0 + 0 ENSG00000139793.18 protein_coding MBNL2 2 OTTHUMG00000017239.4 +21001 chr13 HAVANA gene 97435946 97436168 223.0 + 0 ENSG00000276573.1 sense_intronic AL442067.1 2 OTTHUMG00000189062.1 +21002 chr13 HAVANA gene 97437268 97437630 363.0 + 0 ENSG00000276704.1 sense_intronic AL442067.2 2 OTTHUMG00000189063.1 +21003 chr13 HAVANA gene 97434222 97469128 5570.0 + 0 ENSG00000125249.6 protein_coding RAP2A 2 OTTHUMG00000017240.6 +21004 chr13 HAVANA gene 97475742 97476459 718.0 + 0 ENSG00000271625.1 processed_pseudogene PSMA6P4 1 OTTHUMG00000184875.1 pseudo_consens +21005 chr13 HAVANA gene 97675011 97677963 692.0 - 0 ENSG00000226134.1 lincRNA AL359502.1 1 OTTHUMG00000017241.1 +21006 chr13 HAVANA gene 97901653 97902288 636.0 + 0 ENSG00000233291.1 processed_pseudogene RPL7AP61 1 OTTHUMG00000017243.1 pseudo_consens +21007 chr13 HAVANA gene 97939356 97953539 159.0 + 0 ENSG00000270725.1 lincRNA AL356580.1 2 OTTHUMG00000184177.1 +21008 chr13 HAVANA gene 97986950 97987216 267.0 - 0 ENSG00000232217.1 processed_pseudogene FTLP8 1 OTTHUMG00000017242.1 pseudo_consens +21009 chr13 HAVANA gene 97953658 98024297 9671.0 + 0 ENSG00000065150.18 protein_coding IPO5 1 OTTHUMG00000017244.6 +21010 chr13 HAVANA gene 98175785 98177265 1376.0 - 0 ENSG00000139797.7 protein_coding RNF113B 2 OTTHUMG00000017245.3 +21011 chr13 ENSEMBL gene 98203835 98204192 358.0 - 0 ENSG00000222969.1 misc_RNA RN7SKP8 3 +21012 chr13 ENSEMBL gene 98208524 98208600 77.0 + 0 ENSG00000263399.1 miRNA MIR3170 3 +21013 chr13 HAVANA gene 98233650 98234700 1051.0 + 0 ENSG00000269189.1 sense_intronic AL445223.1 2 OTTHUMG00000182539.1 overlapping_locus +21014 chr13 HAVANA gene 98329655 98333236 508.0 - 0 ENSG00000269599.1 antisense AL161896.1 2 OTTHUMG00000017246.2 +21015 chr13 HAVANA gene 98435405 98435840 323.0 - 0 ENSG00000231194.1 antisense FARP1-AS1 2 OTTHUMG00000017247.1 +21016 chr13 HAVANA gene 98142562 98455176 36228.0 + 0 ENSG00000152767.16 protein_coding FARP1 2 OTTHUMG00000017248.7 ncRNA_host,overlapping_locus +21017 chr13 HAVANA gene 98553243 98553780 538.0 + 0 ENSG00000271437.1 processed_pseudogene AL356423.1 1 OTTHUMG00000184876.1 pseudo_consens +21018 chr13 HAVANA gene 98445185 98577940 12077.0 - 0 ENSG00000102572.14 protein_coding STK24 1 OTTHUMG00000017250.3 +21019 chr13 HAVANA gene 98577244 98578830 1278.0 + 0 ENSG00000224418.1 antisense STK24-AS1 2 OTTHUMG00000017249.1 +21020 chr13 HAVANA gene 98610292 98610876 585.0 - 0 ENSG00000217686.2 processed_pseudogene NUS1P4 1 OTTHUMG00000017251.1 pseudo_consens +21021 chr13 HAVANA gene 98629686 98629989 304.0 - 0 ENSG00000233549.2 processed_pseudogene CYCSP35 1 OTTHUMG00000017252.2 pseudo_consens +21022 chr13 HAVANA gene 98640814 98641239 426.0 - 0 ENSG00000233662.1 processed_pseudogene CALM2P4 1 OTTHUMG00000017253.1 pseudo_consens +21023 chr13 ENSEMBL gene 98671980 98672278 299.0 + 0 ENSG00000243366.3 misc_RNA RN7SL60P 3 +21024 chr13 HAVANA gene 98683801 98752654 4192.0 - 0 ENSG00000088386.16 protein_coding SLC15A1 2 OTTHUMG00000017255.4 +21025 chr13 HAVANA gene 98832084 98834629 392.0 + 0 ENSG00000229918.1 antisense DOCK9-AS1 1 OTTHUMG00000017256.1 +21026 chr13 HAVANA gene 98871742 98872005 264.0 + 0 ENSG00000275919.1 processed_pseudogene AL161420.1 2 OTTHUMG00000187815.1 +21027 chr13 HAVANA gene 98949719 98950447 729.0 - 0 ENSG00000231981.3 processed_pseudogene RPL7L1P12 1 OTTHUMG00000017257.2 pseudo_consens,overlapping_locus +21028 chr13 ENSEMBL gene 99025234 99025345 112.0 + 0 ENSG00000207298.1 snRNA RNU6-83P 3 +21029 chr13 HAVANA gene 98793429 99086625 14816.0 - 0 ENSG00000088387.18 protein_coding DOCK9 2 OTTHUMG00000017260.7 overlapping_locus +21030 chr13 HAVANA gene 99087819 99088625 807.0 + 0 ENSG00000260992.1 antisense DOCK9-DT 2 OTTHUMG00000176064.1 +21031 chr13 HAVANA gene 99173593 99174490 722.0 + 0 ENSG00000230871.1 processed_pseudogene RPS6P23 1 OTTHUMG00000017259.1 pseudo_consens +21032 chr13 HAVANA gene 99190579 99190991 413.0 - 0 ENSG00000234005.3 processed_pseudogene GAPDHP22 1 OTTHUMG00000017258.1 pseudo_consens +21033 chr13 HAVANA gene 99196377 99200710 1771.0 - 0 ENSG00000228889.6 lincRNA UBAC2-AS1 2 OTTHUMG00000017261.2 +21034 chr13 ENSEMBL gene 99205708 99206006 299.0 + 0 ENSG00000201793.1 misc_RNA RN7SKP9 3 +21035 chr13 HAVANA gene 99215372 99215758 387.0 - 0 ENSG00000218502.3 processed_pseudogene H2AFZP3 1 OTTHUMG00000017262.1 pseudo_consens +21036 chr13 HAVANA gene 99254714 99261744 1908.0 - 0 ENSG00000125245.12 protein_coding GPR18 2 OTTHUMG00000017266.2 +21037 chr13 HAVANA gene 99294530 99307405 1700.0 - 0 ENSG00000169508.6 protein_coding GPR183 2 OTTHUMG00000017263.2 +21038 chr13 ENSEMBL gene 99356131 99356228 98.0 + 0 ENSG00000207719.1 miRNA MIR623 3 +21039 chr13 HAVANA gene 99372173 99372686 514.0 + 0 ENSG00000228808.1 processed_pseudogene HMGB3P4 1 OTTHUMG00000017268.1 pseudo_consens,overlapping_locus +21040 chr13 HAVANA gene 99200774 99386434 4603.0 + 0 ENSG00000134882.15 protein_coding UBAC2 2 OTTHUMG00000017267.4 ncRNA_host,overlapping_locus +21041 chr13 HAVANA gene 99404684 99417224 4544.0 - 0 ENSG00000238241.2 transcribed_unprocessed_pseudogene CCR12P 2 OTTHUMG00000017269.2 +21042 chr13 HAVANA gene 99429211 99432702 1188.0 - 0 ENSG00000285448.1 lincRNA AL136961.1 2 OTTHUMG00000192604.1 +21043 chr13 HAVANA gene 99486962 99499306 6199.0 - 0 ENSG00000280734.2 processed_transcript LINC01232 2 OTTHUMG00000189525.1 +21044 chr13 HAVANA gene 99499727 99501052 872.0 - 0 ENSG00000203441.2 antisense LINC00449 1 OTTHUMG00000017270.1 +21045 chr13 HAVANA gene 99498737 99501250 565.0 + 0 ENSG00000280710.3 lincRNA AL139035.1 2 OTTHUMG00000189526.1 +21046 chr13 HAVANA gene 99446311 99564006 5524.0 + 0 ENSG00000125304.9 protein_coding TM9SF2 2 OTTHUMG00000017272.4 +21047 chr13 HAVANA gene 99577112 99580368 650.0 + 0 ENSG00000234168.2 lincRNA LINC01039 2 OTTHUMG00000017273.2 +21048 chr13 HAVANA gene 99582706 99583180 475.0 + 0 ENSG00000234239.1 processed_pseudogene CFL1P8 1 OTTHUMG00000017274.1 pseudo_consens +21049 chr13 ENSEMBL gene 99643059 99643149 91.0 + 0 ENSG00000263615.1 miRNA MIR4306 3 +21050 chr13 HAVANA gene 99690081 99690971 695.0 - 0 ENSG00000227659.1 antisense CLYBL-AS2 2 OTTHUMG00000017275.1 +21051 chr13 HAVANA gene 99726247 99727491 621.0 - 0 ENSG00000234303.2 antisense CLYBL-AS1 2 OTTHUMG00000017276.2 +21052 chr13 ENSEMBL gene 99783857 99783983 127.0 - 0 ENSG00000201245.1 snoRNA RF00402 3 +21053 chr13 HAVANA gene 99606669 99897134 7227.0 + 0 ENSG00000125246.15 protein_coding CLYBL 2 OTTHUMG00000017278.3 ncRNA_host +21054 chr13 HAVANA gene 99962964 99971909 4639.0 - 0 ENSG00000139800.8 protein_coding ZIC5 1 OTTHUMG00000017280.3 +21055 chr13 HAVANA gene 99981772 99986773 3310.0 + 0 ENSG00000043355.11 protein_coding ZIC2 2 OTTHUMG00000017279.4 +21056 chr13 HAVANA gene 99994899 99997909 3011.0 - 0 ENSG00000260738.1 antisense LINC00554 2 OTTHUMG00000176067.1 +21057 chr13 HAVANA gene 100027769 100028174 406.0 - 0 ENSG00000225999.1 processed_pseudogene NDUFA12P1 1 OTTHUMG00000017281.1 pseudo_consens +21058 chr13 HAVANA gene 100062296 100063601 1306.0 - 0 ENSG00000236554.1 processed_pseudogene ASNSP3 1 OTTHUMG00000017282.1 pseudo_consens +21059 chr13 HAVANA gene 100086031 100088848 913.0 - 0 ENSG00000274605.1 lincRNA AL355338.1 2 OTTHUMG00000187284.1 +21060 chr13 HAVANA gene 100150481 100151092 612.0 - 0 ENSG00000228501.2 processed_pseudogene RPL15P18 1 OTTHUMG00000017283.2 pseudo_consens +21061 chr13 HAVANA gene 100198187 100198469 283.0 - 0 ENSG00000270632.1 processed_pseudogene AL356575.1 1 OTTHUMG00000184736.1 pseudo_consens +21062 chr13 HAVANA gene 100464440 100481157 843.0 - 0 ENSG00000234650.5 antisense PCCA-AS1 2 OTTHUMG00000017286.1 +21063 chr13 HAVANA gene 100089015 100530437 7191.0 + 0 ENSG00000175198.16 protein_coding PCCA 2 OTTHUMG00000017284.12 +21064 chr13 HAVANA gene 100537365 100539567 2203.0 + 0 ENSG00000280169.1 antisense AL136526.1 2 OTTHUMG00000182528.1 +21065 chr13 HAVANA gene 100539901 100540248 348.0 - 0 ENSG00000234354.3 processed_pseudogene RPS26P47 2 OTTHUMG00000017285.2 overlapping_locus +21066 chr13 HAVANA gene 100535741 100587146 3635.0 - 0 ENSG00000224356.5 sense_intronic AL356966.1 2 OTTHUMG00000017288.4 overlapping_locus +21067 chr13 HAVANA gene 100530164 100589528 3477.0 - 0 ENSG00000134864.10 protein_coding GGACT 2 OTTHUMG00000017291.5 overlapping_locus +21068 chr13 HAVANA gene 100623875 100624429 211.0 - 0 ENSG00000237082.1 processed_pseudogene COX5BP6 1 OTTHUMG00000017290.1 pseudo_consens,overlapping_locus +21069 chr13 HAVANA gene 100603927 100675093 6272.0 - 0 ENSG00000125247.15 protein_coding TMTC4 1 OTTHUMG00000017289.6 overlapping_locus +21070 chr13 HAVANA gene 100756551 100757059 509.0 - 0 ENSG00000214051.3 processed_pseudogene ARF4P3 1 OTTHUMG00000017292.1 pseudo_consens +21071 chr13 HAVANA gene 100940862 100944364 461.0 - 0 ENSG00000229599.1 lincRNA LINC00411 1 OTTHUMG00000017293.1 +21072 chr13 HAVANA gene 100708325 101059286 2846.0 + 0 ENSG00000233009.1 antisense NALCN-AS1 2 OTTHUMG00000017294.1 +21073 chr13 HAVANA gene 101053776 101416492 8951.0 - 0 ENSG00000102452.16 protein_coding NALCN 2 OTTHUMG00000017295.6 +21074 chr13 HAVANA gene 101452593 101720856 6174.0 + 0 ENSG00000198542.13 protein_coding ITGBL1 2 OTTHUMG00000017296.5 +21075 chr13 HAVANA gene 101717564 101723106 429.0 + 0 ENSG00000276012.1 antisense AL160153.1 2 OTTHUMG00000188138.1 +21076 chr13 ENSEMBL gene 101778884 101779048 165.0 - 0 ENSG00000201155.1 snRNA RNU1-24P 3 +21077 chr13 HAVANA gene 101801878 101802488 611.0 + 0 ENSG00000215399.2 processed_pseudogene HMGB3P7 1 OTTHUMG00000017297.1 pseudo_consens +21078 chr13 ENSEMBL gene 101967642 101967746 105.0 - 0 ENSG00000265164.1 miRNA MIR2681 3 +21079 chr13 HAVANA gene 102002125 102003310 1186.0 + 0 ENSG00000229975.1 processed_pseudogene LIPT1P1 1 OTTHUMG00000017299.1 pseudo_consens +21080 chr13 ENSEMBL gene 102016953 102017069 117.0 - 0 ENSG00000201690.1 misc_RNA RNY1P2 3 +21081 chr13 ENSEMBL gene 102045934 102046004 71.0 - 0 ENSG00000264482.1 miRNA MIR4705 3 +21082 chr13 HAVANA gene 102263046 102263202 157.0 - 0 ENSG00000236860.1 processed_pseudogene RPL39P29 1 OTTHUMG00000017300.1 pseudo_consens,overlapping_locus +21083 chr13 HAVANA gene 102299790 102300272 483.0 - 0 ENSG00000279702.1 TEC AL356266.1 2 OTTHUMG00000185722.1 overlapping_locus +21084 chr13 HAVANA gene 102367539 102373666 537.0 + 0 ENSG00000234445.1 antisense FGF14-AS1 1 OTTHUMG00000017302.1 +21085 chr13 HAVANA gene 102292327 102394519 2379.0 - 0 ENSG00000243319.7 sense_intronic FGF14-IT1 2 OTTHUMG00000017301.3 overlapping_locus +21086 chr13 HAVANA gene 102394630 102395703 1074.0 + 0 ENSG00000272143.1 lincRNA FGF14-AS2 2 OTTHUMG00000185723.1 +21087 chr13 HAVANA gene 101710804 102402457 13759.0 - 0 ENSG00000102466.15 protein_coding FGF14 2 OTTHUMG00000017303.9 ncRNA_host,overlapping_locus +21088 chr13 HAVANA gene 102589372 102589813 442.0 - 0 ENSG00000261057.1 antisense LINC00555 2 OTTHUMG00000176068.1 +21089 chr13 HAVANA gene 102593338 102593873 536.0 - 0 ENSG00000276957.1 lincRNA AL158063.1 2 OTTHUMG00000187286.1 +21090 chr13 HAVANA gene 102597003 102679958 6752.0 + 0 ENSG00000134900.11 protein_coding TPP2 2 OTTHUMG00000017305.4 +21091 chr13 HAVANA gene 102685744 102694504 1088.0 - 0 ENSG00000139780.7 protein_coding METTL21C 2 OTTHUMG00000017304.2 +21092 chr13 HAVANA gene 102742990 102745224 1947.0 + 0 ENSG00000231633.1 antisense LINC00283 2 OTTHUMG00000017311.1 +21093 chr13 HAVANA gene 102729369 102759070 21466.0 - 0 ENSG00000175820.3 protein_coding CCDC168 2 OTTHUMG00000187287.1 +21094 chr13 HAVANA gene 102765990 102773811 2154.0 - 0 ENSG00000151287.16 protein_coding TEX30 2 OTTHUMG00000017306.5 +21095 chr13 HAVANA gene 102784281 102799007 2367.0 - 0 ENSG00000134901.12 protein_coding KDELC1 2 OTTHUMG00000017307.3 +21096 chr13 HAVANA gene 102799049 102841535 5461.0 + 0 ENSG00000134897.13 protein_coding BIVM 2 OTTHUMG00000017309.3 overlapping_locus +21097 chr13 HAVANA gene 102799110 102875994 5709.0 + 0 ENSG00000270181.3 protein_coding BIVM-ERCC5 1 OTTHUMG00000184166.3 overlapping_locus +21098 chr13 HAVANA gene 102807146 102876001 8242.0 + 0 ENSG00000134899.19 protein_coding ERCC5 2 OTTHUMG00000017310.5 overlapping_locus +21099 chr13 HAVANA gene 102888858 102889834 977.0 + 0 ENSG00000272542.1 lincRNA AL137246.1 2 OTTHUMG00000185768.1 overlapping_locus +21100 chr13 HAVANA gene 102880099 102896033 2337.0 + 0 ENSG00000250878.3 transcribed_unprocessed_pseudogene METTL21EP 2 OTTHUMG00000017312.3 overlapping_locus +21101 chr13 HAVANA gene 102903339 102904000 662.0 + 0 ENSG00000278445.1 lincRNA AL137246.2 2 OTTHUMG00000187302.1 +21102 chr13 HAVANA gene 103043998 103066846 3779.0 - 0 ENSG00000125255.6 protein_coding SLC10A2 2 OTTHUMG00000017313.2 +21103 chr13 HAVANA gene 103343660 103396450 1912.0 + 0 ENSG00000285789.1 lincRNA AL162717.1 2 OTTHUMG00000192719.1 +21104 chr13 HAVANA gene 103425200 103427685 492.0 + 0 ENSG00000234551.1 lincRNA LINC01309 1 OTTHUMG00000017314.1 +21105 chr13 HAVANA gene 103444620 103444968 349.0 - 0 ENSG00000230474.1 processed_pseudogene ATP6V1G1P7 2 OTTHUMG00000017315.1 +21106 chr13 HAVANA gene 104814327 104815069 743.0 + 0 ENSG00000225823.1 processed_pseudogene RPL7P45 1 OTTHUMG00000017316.1 pseudo_consens +21107 chr13 ENSEMBL gene 105459815 105460015 201.0 + 0 ENSG00000275968.1 misc_RNA RF02090 3 +21108 chr13 ENSEMBL gene 105462302 105462505 204.0 + 0 ENSG00000275502.1 misc_RNA RF02091 3 +21109 chr13 HAVANA gene 105465867 105491034 2295.0 + 0 ENSG00000182346.19 protein_coding DAOA 2 OTTHUMG00000041333.9 +21110 chr13 HAVANA gene 105459055 105505681 2482.0 - 0 ENSG00000232307.1 antisense DAOA-AS1 2 OTTHUMG00000041332.1 +21111 chr13 HAVANA gene 105690429 105702689 760.0 + 0 ENSG00000280455.1 lincRNA AL359745.1 2 OTTHUMG00000189710.1 +21112 chr13 HAVANA gene 105704280 105764440 4957.0 + 0 ENSG00000226620.7 processed_transcript LINC00343 2 OTTHUMG00000017317.3 +21113 chr13 ENSEMBL gene 105897523 105897643 121.0 - 0 ENSG00000252550.1 snoRNA RF00402 3 +21114 chr13 ENSEMBL gene 106155372 106155490 119.0 - 0 ENSG00000222682.1 rRNA_pseudogene RNA5SP38 3 +21115 chr13 HAVANA gene 106374477 106384315 4232.0 + 0 ENSG00000233532.6 lincRNA LINC00460 2 OTTHUMG00000017319.2 +21116 chr13 HAVANA gene 106425773 106426122 350.0 + 0 ENSG00000174418.7 processed_pseudogene RPL35P9 1 OTTHUMG00000017320.1 pseudo_consens +21117 chr13 HAVANA gene 106506046 106506713 668.0 - 0 ENSG00000274204.1 sense_intronic AL138689.1 2 OTTHUMG00000187299.1 overlapping_locus +21118 chr13 HAVANA gene 106491147 106521630 8771.0 + 0 ENSG00000284966.2 antisense AL138689.2 2 OTTHUMG00000192540.2 +21119 chr13 HAVANA gene 106489731 106535662 5019.0 - 0 ENSG00000125266.7 protein_coding EFNB2 2 OTTHUMG00000017324.6 overlapping_locus +21120 chr13 HAVANA gene 106541673 106568164 4074.0 - 0 ENSG00000134884.14 protein_coding ARGLU1 2 OTTHUMG00000017321.3 +21121 chr13 HAVANA gene 106617810 106631359 1668.0 + 0 ENSG00000272274.1 lincRNA LINC00551 2 OTTHUMG00000185758.1 +21122 chr13 HAVANA gene 106663437 106663847 411.0 + 0 ENSG00000227590.2 processed_pseudogene ATP5MC1P5 1 OTTHUMG00000017322.1 pseudo_consens,overlapping_locus +21123 chr13 HAVANA gene 106653916 106672163 1170.0 + 0 ENSG00000230156.2 lincRNA LINC00443 2 OTTHUMG00000017323.2 overlapping_locus +21124 chr13 HAVANA gene 106773623 106774279 657.0 - 0 ENSG00000278698.1 lincRNA AL162574.2 2 OTTHUMG00000187283.1 +21125 chr13 HAVANA gene 106863816 106864286 471.0 - 0 ENSG00000174408.8 processed_pseudogene PPIAP24 1 OTTHUMG00000017325.2 pseudo_consens +21126 chr13 HAVANA gene 106903150 106904099 950.0 - 0 ENSG00000277863.1 lincRNA AL162574.1 2 OTTHUMG00000187291.1 +21127 chr13 HAVANA gene 106941950 106942561 612.0 - 0 ENSG00000279157.1 TEC AL162574.3 2 OTTHUMG00000186838.1 +21128 chr13 HAVANA gene 106955689 106961392 1017.0 - 0 ENSG00000285643.1 lincRNA AL354741.1 2 OTTHUMG00000193155.1 +21129 chr13 ENSEMBL gene 107320895 107320963 69.0 - 0 ENSG00000201847.1 snoRNA SNORD31B 3 +21130 chr13 HAVANA gene 107465984 107466674 691.0 - 0 ENSG00000276740.1 sense_intronic AL445649.1 2 OTTHUMG00000187292.1 overlapping_locus +21131 chr13 ENSEMBL gene 107531171 107531248 78.0 - 0 ENSG00000221650.1 miRNA MIR1267 3 +21132 chr13 HAVANA gene 107788342 107835451 819.0 - 0 ENSG00000227248.1 sense_intronic FAM155A-IT1 2 OTTHUMG00000017327.1 overlapping_locus +21133 chr13 HAVANA gene 107163510 107866735 8503.0 - 0 ENSG00000204442.3 protein_coding FAM155A 2 OTTHUMG00000017326.3 ncRNA_host,overlapping_locus +21134 chr13 HAVANA gene 107870383 107873372 2990.0 + 0 ENSG00000274718.1 lincRNA AL136964.1 2 OTTHUMG00000187297.2 +21135 chr13 HAVANA gene 108207439 108218368 4387.0 - 0 ENSG00000174405.13 protein_coding LIG4 2 OTTHUMG00000017328.5 +21136 chr13 HAVANA gene 108218379 108234255 5338.0 + 0 ENSG00000139826.5 protein_coding ABHD13 2 OTTHUMG00000017330.1 +21137 chr13 HAVANA gene 108267320 108267734 415.0 + 0 ENSG00000277246.1 sense_intronic AL157762.1 2 OTTHUMG00000187298.1 overlapping_locus +21138 chr13 ENSEMBL gene 108301212 108301331 120.0 - 0 ENSG00000223177.1 rRNA_pseudogene RNA5SP39 3 +21139 chr13 HAVANA gene 108251240 108308484 3059.0 + 0 ENSG00000102524.11 protein_coding TNFSF13B 2 OTTHUMG00000017329.3 overlapping_locus +21140 chr13 HAVANA gene 108335354 108448316 3376.0 + 0 ENSG00000283384.1 lincRNA AL138694.1 2 OTTHUMG00000191618.1 +21141 chr13 HAVANA gene 108480226 108481817 1592.0 + 0 ENSG00000232087.1 processed_pseudogene HCFC2P1 1 OTTHUMG00000017331.1 pseudo_consens +21142 chr13 HAVANA gene 109101261 109101919 436.0 - 0 ENSG00000229938.1 antisense MYO16-AS2 1 OTTHUMG00000017332.1 +21143 chr13 HAVANA gene 109163902 109201483 580.0 - 0 ENSG00000236242.1 antisense MYO16-AS1 2 OTTHUMG00000017335.1 +21144 chr13 HAVANA gene 108596152 109208007 9209.0 + 0 ENSG00000041515.15 protein_coding MYO16 2 OTTHUMG00000017333.4 +21145 chr13 HAVANA gene 109269634 109278512 5087.0 + 0 ENSG00000275216.2 lincRNA AL161431.1 2 OTTHUMG00000187241.2 +21146 chr13 HAVANA gene 109281973 109297690 1337.0 + 0 ENSG00000223617.2 processed_transcript LINC00370 1 OTTHUMG00000017334.2 +21147 chr13 HAVANA gene 109310135 109311773 664.0 + 0 ENSG00000236053.1 lincRNA LINC01067 2 OTTHUMG00000017336.1 +21148 chr13 HAVANA gene 109400696 109401641 414.0 + 0 ENSG00000229792.1 lincRNA LINC00399 1 OTTHUMG00000017337.1 +21149 chr13 HAVANA gene 109728282 109730007 474.0 + 0 ENSG00000234854.1 antisense LINC00676 2 OTTHUMG00000017340.1 +21150 chr13 HAVANA gene 109478739 109731700 1515.0 - 0 ENSG00000285534.1 lincRNA AL163541.1 2 OTTHUMG00000192872.1 +21151 chr13 HAVANA gene 109752698 109786568 8138.0 - 0 ENSG00000185950.8 protein_coding IRS2 2 OTTHUMG00000017338.2 +21152 chr13 HAVANA gene 109805317 109805868 552.0 + 0 ENSG00000275248.1 lincRNA AL355810.1 2 OTTHUMG00000187251.1 overlapping_locus +21153 chr13 HAVANA gene 109785831 109808252 518.0 + 0 ENSG00000275741.1 antisense AL162497.1 2 OTTHUMG00000187250.1 overlapping_locus +21154 chr13 ENSEMBL gene 109915096 109915420 325.0 + 0 ENSG00000201161.1 misc_RNA RN7SKP10 3 +21155 chr13 HAVANA gene 109984858 109986565 1708.0 - 0 ENSG00000274331.1 lincRNA AL355974.1 2 OTTHUMG00000187260.1 +21156 chr13 HAVANA gene 110031101 110031567 467.0 - 0 ENSG00000276269.1 lincRNA AL355974.3 2 OTTHUMG00000187262.1 overlapping_locus +21157 chr13 HAVANA gene 110053285 110054952 439.0 + 0 ENSG00000231428.2 lincRNA LINC00396 2 OTTHUMG00000017341.2 +21158 chr13 HAVANA gene 109988097 110057331 1331.0 - 0 ENSG00000275830.1 lincRNA AL355974.2 2 OTTHUMG00000187265.1 overlapping_locus +21159 chr13 ENSEMBL gene 110097851 110098151 301.0 - 0 ENSG00000265885.2 misc_RNA RN7SL783P 3 +21160 chr13 HAVANA gene 110123208 110125234 2027.0 + 0 ENSG00000279965.1 TEC AL390755.1 2 OTTHUMG00000176070.1 +21161 chr13 HAVANA gene 110265251 110266113 863.0 - 0 ENSG00000279237.1 TEC AL161773.1 2 OTTHUMG00000188248.1 overlapping_locus +21162 chr13 HAVANA gene 110148963 110307233 14738.0 - 0 ENSG00000187498.15 protein_coding COL4A1 2 OTTHUMG00000017342.10 overlapping_locus +21163 chr13 ENSEMBL gene 110340958 110341029 72.0 + 0 ENSG00000276765.1 miRNA MIR8073 3 +21164 chr13 HAVANA gene 110456396 110463287 1522.0 - 0 ENSG00000224821.5 antisense COL4A2-AS2 2 OTTHUMG00000149650.3 +21165 chr13 HAVANA gene 110502575 110508179 540.0 - 0 ENSG00000232814.2 antisense COL4A2-AS1 2 OTTHUMG00000149649.2 +21166 chr13 HAVANA gene 110305812 110513209 19293.0 + 0 ENSG00000134871.18 protein_coding COL4A2 1 OTTHUMG00000017344.8 ncRNA_host,overlapping_locus +21167 chr13 HAVANA gene 110523066 110561733 1518.0 - 0 ENSG00000139832.4 protein_coding RAB20 2 OTTHUMG00000017343.3 +21168 chr13 HAVANA gene 110613082 110616353 3272.0 - 0 ENSG00000275880.1 antisense AL139385.1 2 OTTHUMG00000187271.1 +21169 chr13 HAVANA gene 110615460 110639993 2847.0 + 0 ENSG00000213995.11 protein_coding NAXD 2 OTTHUMG00000017345.3 +21170 chr13 HAVANA gene 110641412 110713603 10460.0 - 0 ENSG00000134905.16 protein_coding CARS2 1 OTTHUMG00000017347.7 +21171 chr13 HAVANA gene 110712736 110723339 6388.0 + 0 ENSG00000153487.12 protein_coding ING1 2 OTTHUMG00000017346.6 +21172 chr13 HAVANA gene 110762674 110763133 460.0 - 0 ENSG00000225239.1 processed_pseudogene RPL21P107 1 OTTHUMG00000017348.1 pseudo_consens +21173 chr13 HAVANA gene 110809676 110813084 3409.0 - 0 ENSG00000259831.1 lincRNA LINC00567 2 OTTHUMG00000176071.1 +21174 chr13 HAVANA gene 110863987 110870251 6265.0 - 0 ENSG00000255874.2 lincRNA LINC00346 2 OTTHUMG00000187398.1 +21175 chr13 HAVANA gene 110894639 110899172 800.0 - 0 ENSG00000229152.2 sense_intronic ANKRD10-IT1 1 OTTHUMG00000046190.2 overlapping_locus +21176 chr13 HAVANA gene 110878540 110915069 4563.0 - 0 ENSG00000088448.14 protein_coding ANKRD10 1 OTTHUMG00000017349.6 overlapping_locus +21177 chr13 HAVANA gene 110916004 110917827 1824.0 + 0 ENSG00000277767.1 lincRNA AL442128.2 2 OTTHUMG00000187282.1 +21178 chr13 HAVANA gene 110936759 110939784 3026.0 + 0 ENSG00000227105.1 processed_pseudogene PARP1P1 1 OTTHUMG00000017350.1 pseudo_consens +21179 chr13 HAVANA gene 110952722 110952811 90.0 - 0 ENSG00000275989.1 unprocessed_pseudogene AL442128.1 2 OTTHUMG00000187816.1 +21180 chr13 HAVANA gene 110965704 110990579 1189.0 + 0 ENSG00000225760.2 transcribed_unprocessed_pseudogene LINC00431 2 OTTHUMG00000017351.3 +21181 chr13 HAVANA gene 111095838 111103097 650.0 + 0 ENSG00000225870.1 lincRNA LINC00368 2 OTTHUMG00000017352.1 +21182 chr13 HAVANA gene 111113812 111115678 1239.0 - 0 ENSG00000235875.3 antisense ARHGEF7-AS2 1 OTTHUMG00000017353.2 +21183 chr13 HAVANA gene 111122652 111144264 804.0 + 0 ENSG00000233644.1 sense_intronic ARHGEF7-IT1 2 OTTHUMG00000017354.1 overlapping_locus +21184 chr13 HAVANA gene 111144305 111144733 321.0 - 0 ENSG00000227352.1 antisense ARHGEF7-AS1 2 OTTHUMG00000017355.1 +21185 chr13 HAVANA gene 111148196 111153171 1311.0 - 0 ENSG00000285856.1 antisense AL353704.1 2 OTTHUMG00000193089.1 +21186 chr13 HAVANA gene 111182111 111182692 582.0 - 0 ENSG00000274614.1 unprocessed_pseudogene AL390754.1 2 OTTHUMG00000187818.1 +21187 chr13 HAVANA gene 111114559 111305737 11768.0 + 0 ENSG00000102606.18 protein_coding ARHGEF7 2 OTTHUMG00000017357.11 overlapping_locus +21188 chr13 HAVANA gene 111316184 111344249 930.0 + 0 ENSG00000153495.10 protein_coding TEX29 2 OTTHUMG00000017358.3 +21189 chr13 HAVANA gene 111596009 111642079 374.0 + 0 ENSG00000215881.3 lincRNA LINC02337 2 OTTHUMG00000017359.2 overlapping_locus +21190 chr13 HAVANA gene 111588201 111672608 2130.0 + 0 ENSG00000204398.5 lincRNA AL359649.1 2 OTTHUMG00000017360.3 overlapping_locus +21191 chr13 HAVANA gene 111899985 111901176 590.0 + 0 ENSG00000226903.1 lincRNA LINC00354 2 OTTHUMG00000017361.1 +21192 chr13 ENSEMBL gene 112052078 112052138 61.0 + 0 ENSG00000200072.1 snoRNA RF00287 3 +21193 chr13 HAVANA gene 112067647 112070488 2842.0 + 0 ENSG00000182968.4 protein_coding SOX1 2 OTTHUMG00000017362.3 retrogene +21194 chr13 HAVANA gene 112083549 112085471 1923.0 + 0 ENSG00000260385.1 lincRNA AL356961.1 2 OTTHUMG00000176075.1 +21195 chr13 HAVANA gene 112106095 112106882 428.0 - 0 ENSG00000229520.1 lincRNA LINC00404 2 OTTHUMG00000017364.1 +21196 chr13 HAVANA gene 112107119 112108015 545.0 + 0 ENSG00000224243.1 lincRNA SOX1-OT 2 OTTHUMG00000017363.1 +21197 chr13 HAVANA gene 112197350 112201000 2829.0 + 0 ENSG00000260102.1 lincRNA LINC01070 2 OTTHUMG00000176078.1 +21198 chr13 HAVANA gene 112313467 112321758 6897.0 + 0 ENSG00000260343.1 lincRNA LINC01043 2 OTTHUMG00000176083.1 +21199 chr13 HAVANA gene 112322567 112331225 657.0 - 0 ENSG00000223626.1 lincRNA LINC01044 2 OTTHUMG00000017366.1 +21200 chr13 HAVANA gene 112376319 112434689 1114.0 + 0 ENSG00000153498.11 protein_coding SPACA7 1 OTTHUMG00000017365.4 +21201 chr13 HAVANA gene 112485005 112588205 7254.0 - 0 ENSG00000126216.14 protein_coding TUBGCP3 2 OTTHUMG00000017367.7 +21202 chr13 HAVANA gene 112602828 112606417 3590.0 - 0 ENSG00000277159.1 lincRNA AL139384.2 2 OTTHUMG00000187183.1 +21203 chr13 HAVANA gene 112647044 112684497 2241.0 + 0 ENSG00000197595.4 lincRNA ATP11AUN 1 OTTHUMG00000056478.2 +21204 chr13 HAVANA gene 112686769 112689815 3047.0 - 0 ENSG00000274922.1 lincRNA AL139384.1 2 OTTHUMG00000187192.1 +21205 chr13 HAVANA gene 112745449 112754693 2192.0 - 0 ENSG00000232684.1 antisense ATP11A-AS1 1 OTTHUMG00000017370.2 +21206 chr13 HAVANA gene 112811566 112812158 593.0 + 0 ENSG00000277545.1 sense_intronic AL356752.1 2 OTTHUMG00000187196.1 overlapping_locus +21207 chr13 HAVANA gene 112690329 112887168 13733.0 + 0 ENSG00000068650.18 protein_coding ATP11A 2 OTTHUMG00000017371.10 overlapping_locus +21208 chr13 HAVANA gene 112964835 112966131 1297.0 - 0 ENSG00000267868.1 lincRNA AL356740.1 2 OTTHUMG00000182533.1 +21209 chr13 HAVANA gene 112967484 112968824 712.0 - 0 ENSG00000235280.2 antisense MCF2L-AS1 2 OTTHUMG00000057130.2 +21210 chr13 HAVANA gene 113008778 113009424 647.0 + 0 ENSG00000269356.1 sense_intronic AL356740.2 2 OTTHUMG00000182534.1 overlapping_locus +21211 chr13 HAVANA gene 113009671 113010319 649.0 + 0 ENSG00000269376.1 sense_intronic AL356740.3 2 OTTHUMG00000182535.1 overlapping_locus +21212 chr13 HAVANA gene 112894378 113099739 23148.0 + 0 ENSG00000126217.20 protein_coding MCF2L 1 OTTHUMG00000017377.17 overlapping_locus +21213 chr13 HAVANA gene 113105788 113120681 3795.0 + 0 ENSG00000057593.13 protein_coding F7 2 OTTHUMG00000017373.7 +21214 chr13 HAVANA gene 113128155 113128880 417.0 - 0 ENSG00000231882.1 antisense F10-AS1 1 OTTHUMG00000133691.1 +21215 chr13 HAVANA gene 113130416 113132054 1639.0 + 0 ENSG00000230371.1 processed_pseudogene KARSP2 1 OTTHUMG00000017375.2 pseudo_consens,overlapping_locus +21216 chr13 HAVANA gene 113122814 113149529 2356.0 + 0 ENSG00000126218.11 protein_coding F10 1 OTTHUMG00000017374.7 overlapping_locus +21217 chr13 HAVANA gene 113149432 113154002 2238.0 - 0 ENSG00000283828.1 antisense AL137002.2 2 OTTHUMG00000191998.1 +21218 chr13 HAVANA gene 113165002 113165183 182.0 - 0 ENSG00000269125.1 antisense AL137002.1 2 OTTHUMG00000182536.1 +21219 chr13 HAVANA gene 113158654 113172383 1666.0 + 0 ENSG00000126231.13 protein_coding PROZ 2 OTTHUMG00000017376.2 +21220 chr13 HAVANA gene 113177539 113208715 6243.0 - 0 ENSG00000126226.21 protein_coding PCID2 2 OTTHUMG00000017385.4 +21221 chr13 ENSEMBL gene 113262920 113262999 80.0 + 0 ENSG00000277942.1 miRNA MIR8075 3 +21222 chr13 HAVANA gene 113208193 113267108 7869.0 + 0 ENSG00000139842.14 protein_coding CUL4A 2 OTTHUMG00000017384.5 ncRNA_host +21223 chr13 HAVANA gene 113276616 113277734 1119.0 + 0 ENSG00000232662.2 processed_pseudogene LDHBP1 1 OTTHUMG00000017383.2 pseudo_consens +21224 chr13 HAVANA gene 113297241 113323672 5739.0 + 0 ENSG00000185896.10 protein_coding LAMP1 2 OTTHUMG00000017380.2 +21225 chr13 HAVANA gene 113339450 113339958 509.0 - 0 ENSG00000276434.1 sense_intronic AL136221.1 2 OTTHUMG00000187208.1 overlapping_locus +21226 chr13 HAVANA gene 113351673 113361868 1177.0 + 0 ENSG00000225083.1 antisense GRTP1-AS1 1 OTTHUMG00000017382.1 +21227 chr13 HAVANA gene 113324164 113364148 2916.0 - 0 ENSG00000139835.13 protein_coding GRTP1 1 OTTHUMG00000017381.5 overlapping_locus +21228 chr13 HAVANA gene 113399610 113453524 10924.0 - 0 ENSG00000153531.13 protein_coding ADPRHL1 2 OTTHUMG00000017386.7 +21229 chr13 HAVANA gene 113468901 113476135 373.0 + 0 ENSG00000233613.5 antisense DCUN1D2-AS 2 OTTHUMG00000017391.1 +21230 chr13 ENSEMBL gene 113478915 113479078 164.0 - 0 ENSG00000202347.1 snRNA RNU1-16P 3 +21231 chr13 HAVANA gene 113455819 113490952 4346.0 - 0 ENSG00000150401.14 protein_coding DCUN1D2 2 OTTHUMG00000017390.6 ncRNA_host +21232 chr13 HAVANA gene 113511747 113514473 418.0 + 0 ENSG00000276916.1 sense_intronic AL442125.2 2 OTTHUMG00000187505.1 overlapping_locus +21233 chr13 HAVANA gene 113527260 113530621 3362.0 + 0 ENSG00000276248.1 sense_intronic AL442125.1 2 OTTHUMG00000187227.1 overlapping_locus +21234 chr13 HAVANA gene 113490995 113554590 10407.0 + 0 ENSG00000150403.17 protein_coding TMCO3 2 OTTHUMG00000017389.10 overlapping_locus +21235 chr13 HAVANA gene 113584721 113641470 3741.0 + 0 ENSG00000198176.12 protein_coding TFDP1 2 OTTHUMG00000017388.6 +21236 chr13 HAVANA gene 113648804 113658186 1488.0 - 0 ENSG00000186009.4 protein_coding ATP4B 2 OTTHUMG00000140234.3 +21237 chr13 HAVANA gene 113667155 113737735 4941.0 + 0 ENSG00000185974.6 protein_coding GRK1 2 OTTHUMG00000185528.1 +21238 chr13 HAVANA gene 113748511 113751089 2579.0 - 0 ENSG00000279770.1 TEC LINC00552 2 OTTHUMG00000186842.1 +21239 chr13 HAVANA gene 113759240 113816995 7287.0 + 0 ENSG00000184497.12 protein_coding TMEM255B 1 OTTHUMG00000017398.6 overlapping_locus +21240 chr13 HAVANA gene 113815630 113845744 7169.0 + 0 ENSG00000233695.2 antisense GAS6-AS1 2 OTTHUMG00000017396.2 overlapping_locus +21241 chr13 HAVANA gene 113820549 113864067 6006.0 - 0 ENSG00000183087.14 protein_coding GAS6 2 OTTHUMG00000017395.4 +21242 chr13 HAVANA gene 113864168 113866833 1952.0 + 0 ENSG00000272695.1 lincRNA GAS6-DT 2 OTTHUMG00000186446.1 +21243 chr13 HAVANA gene 113877608 113879376 344.0 + 0 ENSG00000237699.2 lincRNA BX072579.1 2 OTTHUMG00000017397.3 +21244 chr13 HAVANA gene 113878489 113883651 2234.0 - 0 ENSG00000226921.6 lincRNA LINC00454 2 OTTHUMG00000017392.3 +21245 chr13 HAVANA gene 113883667 113885335 525.0 + 0 ENSG00000274766.1 lincRNA BX072579.2 2 OTTHUMG00000186657.1 +21246 chr13 HAVANA gene 113888306 113923512 3578.0 + 0 ENSG00000229373.8 lincRNA LINC00452 2 OTTHUMG00000017394.2 +21247 chr13 HAVANA gene 113926514 113928844 2331.0 - 0 ENSG00000260910.1 lincRNA LINC00565 2 OTTHUMG00000176086.1 +21248 chr13 HAVANA gene 113953705 113974079 3836.0 - 0 ENSG00000283199.2 protein_coding C13orf46 2 OTTHUMG00000191740.2 +21249 chr13 HAVANA gene 114107569 114108820 380.0 - 0 ENSG00000232487.1 sense_intronic RASA3-IT1 1 OTTHUMG00000017400.1 overlapping_locus +21250 chr13 HAVANA gene 113977783 114132611 4763.0 - 0 ENSG00000185989.10 protein_coding RASA3 2 OTTHUMG00000017399.3 overlapping_locus +21251 chr13 HAVANA gene 114175485 114215835 575.0 - 0 ENSG00000283347.1 antisense AL160396.1 2 OTTHUMG00000191664.1 +21252 chr13 HAVANA gene 114154691 114223084 2353.0 + 0 ENSG00000283361.2 protein_coding CFAP97D2 2 OTTHUMG00000191665.2 +21253 chr13 ENSEMBL gene 114244505 114244561 57.0 + 0 ENSG00000264539.1 miRNA MIR548AR 3 +21254 chr13 HAVANA gene 114234887 114272723 3901.0 + 0 ENSG00000130177.15 protein_coding CDC16 2 OTTHUMG00000017402.6 ncRNA_host +21255 chr13 ENSEMBL gene 114273828 114273908 81.0 + 0 ENSG00000265450.1 miRNA MIR4502 3 +21256 chr13 HAVANA gene 114275326 114277323 1202.0 - 0 ENSG00000285672.1 lincRNA AL160396.2 2 OTTHUMG00000193107.2 +21257 chr13 HAVANA gene 114281584 114305817 5772.0 + 0 ENSG00000169062.14 protein_coding UPF3A 2 OTTHUMG00000017403.5 +21258 chr13 HAVANA gene 114306646 114307066 421.0 + 0 ENSG00000226158.1 processed_pseudogene CLCP2 1 OTTHUMG00000017401.1 pseudo_consens +21259 chr13 HAVANA gene 114329559 114333948 514.0 - 0 ENSG00000229723.1 antisense LINC01054 2 OTTHUMG00000017405.1 +21260 chr13 HAVANA gene 114314335 114337626 5770.0 + 0 ENSG00000198824.6 protein_coding CHAMP1 2 OTTHUMG00000017404.8 +21261 chr13 HAVANA gene 114346167 114346637 471.0 + 0 ENSG00000260615.1 processed_pseudogene RPL23AP97 1 OTTHUMG00000175625.1 pseudo_consens +21262 chr14 ENSEMBL gene 16057472 16057622 151.0 + 0 ENSG00000283274.1 rRNA RF00002 3 +21263 chr14 HAVANA gene 18333726 18341859 734.0 + 0 ENSG00000215398.11 transcribed_unprocessed_pseudogene CR383658.1 2 OTTHUMG00000163209.3 +21264 chr14 ENSEMBL gene 18343038 18343144 107.0 + 0 ENSG00000206906.1 snRNA RNU6-458P 3 +21265 chr14 HAVANA gene 18395626 18412264 1525.0 - 0 ENSG00000257171.2 transcribed_unprocessed_pseudogene CR383658.2 2 OTTHUMG00000170292.2 +21266 chr14 HAVANA gene 18418775 18419273 499.0 + 0 ENSG00000257356.2 processed_pseudogene BNIP3P6 1 OTTHUMG00000170293.2 pseudo_consens +21267 chr14 HAVANA gene 18560047 18560191 145.0 + 0 ENSG00000257721.1 processed_pseudogene CR383656.7 2 OTTHUMG00000170295.1 +21268 chr14 HAVANA gene 18562928 18568790 406.0 + 0 ENSG00000258367.2 transcribed_unprocessed_pseudogene CR383656.13 2 OTTHUMG00000170296.1 +21269 chr14 HAVANA gene 18588274 18588315 42.0 - 0 ENSG00000257825.1 transcribed_processed_pseudogene CR383656.9 2 OTTHUMG00000170297.1 overlapping_locus +21270 chr14 HAVANA gene 18555677 18596310 498.0 - 0 ENSG00000257959.1 antisense CR383656.10 2 OTTHUMG00000170294.1 overlapping_locus +21271 chr14 HAVANA gene 18601045 18602129 1085.0 + 0 ENSG00000257115.1 protein_coding OR11H12 2 OTTHUMG00000170298.1 +21272 chr14 HAVANA gene 18614388 18614561 174.0 + 0 ENSG00000257672.2 processed_pseudogene CR383656.6 2 OTTHUMG00000170333.2 +21273 chr14 HAVANA gene 18623852 18626787 2936.0 - 0 ENSG00000258233.1 processed_pseudogene ARHGAP42P5 1 OTTHUMG00000170299.1 pseudo_consens +21274 chr14 HAVANA gene 18630318 18633634 1493.0 - 0 ENSG00000257504.1 lincRNA LINC02297 2 OTTHUMG00000170300.1 +21275 chr14 HAVANA gene 18634955 18637208 2254.0 - 0 ENSG00000257175.2 processed_pseudogene CR383656.1 1 OTTHUMG00000170302.2 pseudo_consens +21276 chr14 HAVANA gene 18636043 18637421 563.0 + 0 ENSG00000258364.1 lincRNA CR383656.12 2 OTTHUMG00000170334.1 overlapping_locus +21277 chr14 HAVANA gene 18645044 18646221 1178.0 - 0 ENSG00000257731.2 processed_pseudogene CR383656.8 1 OTTHUMG00000170304.2 pseudo_consens +21278 chr14 HAVANA gene 18645991 18646503 513.0 + 0 ENSG00000258076.1 processed_pseudogene CR383656.11 2 OTTHUMG00000170335.1 overlapping_locus +21279 chr14 HAVANA gene 18631388 18650966 394.0 + 0 ENSG00000257644.1 unprocessed_pseudogene CR383656.5 2 OTTHUMG00000170301.1 overlapping_locus +21280 chr14 HAVANA gene 18667249 18667370 122.0 + 0 ENSG00000257558.2 processed_pseudogene CR383656.3 2 OTTHUMG00000170336.2 +21281 chr14 HAVANA gene 18692032 18692408 377.0 + 0 ENSG00000239200.1 processed_pseudogene RPL22P20 1 OTTHUMG00000157631.2 pseudo_consens +21282 chr14 HAVANA gene 18698639 18699978 1340.0 - 0 ENSG00000257635.2 transcribed_processed_pseudogene CR383656.4 1 OTTHUMG00000170305.2 pseudo_consens +21283 chr14 HAVANA gene 18702281 18702463 183.0 - 0 ENSG00000257224.1 transcribed_processed_pseudogene CR383656.2 2 OTTHUMG00000170306.1 +21284 chr14 HAVANA gene 18709478 18712643 751.0 - 0 ENSG00000277529.1 transcribed_unprocessed_pseudogene NF1P10 2 OTTHUMG00000188378.2 +21285 chr14 HAVANA gene 18889084 18890424 1341.0 - 0 ENSG00000277367.1 processed_pseudogene AL929601.4 1 OTTHUMG00000188379.1 pseudo_consens +21286 chr14 HAVANA gene 18899942 18909673 1530.0 - 0 ENSG00000278143.1 unprocessed_pseudogene NF1P7 2 OTTHUMG00000170303.6 +21287 chr14 HAVANA gene 18912805 18916642 1188.0 - 0 ENSG00000257853.2 transcribed_unprocessed_pseudogene MED15P1 2 OTTHUMG00000170337.3 +21288 chr14 HAVANA gene 18920109 18934078 871.0 + 0 ENSG00000257891.1 lincRNA AL929601.1 2 OTTHUMG00000170338.2 +21289 chr14 HAVANA gene 18944199 18945139 381.0 + 0 ENSG00000258265.1 lincRNA AL929601.2 2 OTTHUMG00000170339.1 +21290 chr14 ENSEMBL gene 18978847 18978953 107.0 + 0 ENSG00000212612.1 snRNA RNU6-1239P 3 +21291 chr14 HAVANA gene 18977180 18980742 2086.0 - 0 ENSG00000275563.1 antisense AL929601.3 2 OTTHUMG00000170341.3 +21292 chr14 HAVANA gene 18967434 18999012 2231.0 + 0 ENSG00000222036.7 protein_coding POTEM 2 OTTHUMG00000170340.4 ncRNA_host +21293 chr14 HAVANA gene 19026521 19028189 1115.0 - 0 ENSG00000274369.1 processed_pseudogene GRAMD4P4 1 OTTHUMG00000188535.1 pseudo_consens +21294 chr14 HAVANA gene 19024090 19055551 796.0 + 0 ENSG00000258314.3 lincRNA AL589182.1 2 OTTHUMG00000170342.4 +21295 chr14 HAVANA gene 19062316 19131167 4846.0 + 0 ENSG00000225210.10 transcribed_processed_pseudogene DUXAP9 1 OTTHUMG00000188246.4 pseudo_consens,overlapping_locus +21296 chr14 HAVANA gene 19131842 19132890 1049.0 - 0 ENSG00000278594.1 processed_pseudogene AL589182.2 1 OTTHUMG00000188245.1 pseudo_consens +21297 chr14 HAVANA gene 19130636 19155089 693.0 + 0 ENSG00000277710.2 transcribed_unprocessed_pseudogene NBEAP5 2 OTTHUMG00000170506.4 overlapping_locus +21298 chr14 HAVANA gene 19124807 19175530 7344.0 - 0 ENSG00000277128.2 lincRNA AL589743.4 2 OTTHUMG00000170505.4 overlapping_locus +21299 chr14 HAVANA gene 19180291 19181269 979.0 + 0 ENSG00000196143.4 unprocessed_pseudogene OR11H13P 1 OTTHUMG00000170504.2 pseudo_consens +21300 chr14 HAVANA gene 19199763 19200279 517.0 - 0 ENSG00000271632.1 processed_pseudogene AL589743.3 2 OTTHUMG00000185290.1 +21301 chr14 HAVANA gene 19220796 19220912 117.0 - 0 ENSG00000277252.1 unprocessed_pseudogene AL589743.6 2 OTTHUMG00000187823.1 +21302 chr14 HAVANA gene 19228898 19229945 1048.0 - 0 ENSG00000258781.3 unprocessed_pseudogene AL589743.2 2 OTTHUMG00000170502.3 +21303 chr14 HAVANA gene 19244962 19247673 2712.0 + 0 ENSG00000257310.1 lincRNA AL589743.1 2 OTTHUMG00000170433.1 +21304 chr14 HAVANA gene 19267115 19268164 1050.0 + 0 ENSG00000277156.1 processed_pseudogene AL589743.5 1 OTTHUMG00000170503.3 pseudo_consens +21305 chr14 HAVANA gene 19244904 19269380 647.0 - 0 ENSG00000285990.1 transcribed_unprocessed_pseudogene AL589743.7 2 OTTHUMG00000192623.1 +21306 chr14 HAVANA gene 19301704 19316914 1130.0 + 0 ENSG00000228294.6 transcribed_unprocessed_pseudogene BMS1P17 2 OTTHUMG00000150377.3 +21307 chr14 HAVANA gene 19268853 19337730 12311.0 - 0 ENSG00000244306.11 transcribed_processed_pseudogene DUXAP10 1 OTTHUMG00000170430.13 pseudo_consens +21308 chr14 HAVANA gene 19371822 19373490 1669.0 + 0 ENSG00000278301.1 processed_pseudogene GRAMD4P3 1 OTTHUMG00000188244.1 pseudo_consens +21309 chr14 HAVANA gene 19344578 19384587 4414.0 - 0 ENSG00000274827.4 lincRNA LINC01297 2 OTTHUMG00000170514.4 +21310 chr14 ENSEMBL gene 19422815 19422921 107.0 - 0 ENSG00000212516.1 snRNA RNU6-1268P 3 +21311 chr14 HAVANA gene 19420975 19425017 2566.0 + 0 ENSG00000276888.1 antisense AL512624.2 2 OTTHUMG00000170542.2 +21312 chr14 HAVANA gene 19402486 19434341 2509.0 - 0 ENSG00000187537.13 protein_coding POTEG 2 OTTHUMG00000170518.8 ncRNA_host,overlapping_locus +21313 chr14 HAVANA gene 19485336 19489148 988.0 + 0 ENSG00000257162.6 transcribed_processed_pseudogene MED15P6 2 OTTHUMG00000170543.4 +21314 chr14 HAVANA gene 19492281 19501740 1681.0 + 0 ENSG00000258027.2 unprocessed_pseudogene NF1P4 2 OTTHUMG00000170544.4 overlapping_locus +21315 chr14 HAVANA gene 19511244 19511712 469.0 + 0 ENSG00000274649.1 processed_pseudogene AL512624.1 2 OTTHUMG00000188372.1 +21316 chr14 HAVANA gene 19612191 19619490 1282.0 + 0 ENSG00000278184.1 unprocessed_pseudogene NF1P11 2 OTTHUMG00000188370.1 overlapping_locus +21317 chr14 HAVANA gene 19629006 19630340 1335.0 + 0 ENSG00000257432.1 processed_pseudogene AL512310.3 1 OTTHUMG00000170545.2 pseudo_consens,overlapping_locus +21318 chr14 HAVANA gene 19637225 19641306 1837.0 + 0 ENSG00000273558.1 lincRNA AL512310.10 2 OTTHUMG00000170546.2 overlapping_locus +21319 chr14 HAVANA gene 19653623 19653742 120.0 - 0 ENSG00000258324.2 processed_pseudogene AL512310.8 2 OTTHUMG00000170551.3 +21320 chr14 HAVANA gene 19668542 19669056 515.0 - 0 ENSG00000257751.2 processed_pseudogene AL512310.5 2 OTTHUMG00000170553.2 overlapping_locus +21321 chr14 HAVANA gene 19668829 19670003 1175.0 + 0 ENSG00000257846.2 processed_pseudogene AL512310.6 1 OTTHUMG00000170554.2 pseudo_consens,overlapping_locus +21322 chr14 HAVANA gene 19499737 19677923 636.0 + 0 ENSG00000273639.6 processed_transcript AL512310.11 2 OTTHUMG00000188373.2 overlapping_locus +21323 chr14 HAVANA gene 19677644 19679016 563.0 - 0 ENSG00000259069.1 lincRNA AL512310.9 2 OTTHUMG00000170596.1 overlapping_locus +21324 chr14 HAVANA gene 19677837 19680104 2268.0 + 0 ENSG00000257884.2 transcribed_processed_pseudogene AL512310.7 1 OTTHUMG00000170555.2 pseudo_consens,overlapping_locus +21325 chr14 HAVANA gene 19664098 19683677 411.0 - 0 ENSG00000257493.1 unprocessed_pseudogene AL512310.4 2 OTTHUMG00000170552.1 overlapping_locus +21326 chr14 HAVANA gene 19681420 19684739 1493.0 + 0 ENSG00000257395.1 lincRNA AL512310.2 2 OTTHUMG00000170556.1 +21327 chr14 HAVANA gene 19688261 19691194 2934.0 + 0 ENSG00000258080.1 processed_pseudogene ARHGAP42P4 1 OTTHUMG00000170557.1 pseudo_consens +21328 chr14 HAVANA gene 19700479 19700650 172.0 - 0 ENSG00000257142.1 unprocessed_pseudogene AL512310.1 2 OTTHUMG00000170558.1 +21329 chr14 HAVANA gene 19712904 19714332 1085.0 - 0 ENSG00000258453.3 protein_coding OR11H2 2 OTTHUMG00000170597.4 +21330 chr14 HAVANA gene 19733355 19734302 948.0 - 0 ENSG00000258438.3 unprocessed_pseudogene OR11K2P 2 OTTHUMG00000170598.1 +21331 chr14 HAVANA gene 19743571 19749469 2165.0 + 0 ENSG00000182652.3 protein_coding OR4Q3 2 OTTHUMG00000170612.5 +21332 chr14 HAVANA gene 19759868 19760774 907.0 + 0 ENSG00000176312.4 unprocessed_pseudogene OR4H12P 2 OTTHUMG00000170613.1 +21333 chr14 HAVANA gene 19773504 19783696 3545.0 + 0 ENSG00000176299.5 protein_coding OR4M1 2 OTTHUMG00000170599.2 +21334 chr14 HAVANA gene 19796345 19797293 949.0 + 0 ENSG00000258564.2 unprocessed_pseudogene OR4N1P 2 OTTHUMG00000154362.3 +21335 chr14 HAVANA gene 19719015 19830253 3699.0 + 0 ENSG00000176294.5 protein_coding OR4N2 2 OTTHUMG00000170614.7 +21336 chr14 HAVANA gene 19847367 19848263 897.0 + 0 ENSG00000228304.1 unprocessed_pseudogene OR4K6P 2 OTTHUMG00000170623.1 +21337 chr14 HAVANA gene 19868197 19869143 947.0 - 0 ENSG00000176290.8 polymorphic_pseudogene OR4K3 2 OTTHUMG00000154257.2 +21338 chr14 HAVANA gene 19875142 19883932 8694.0 + 0 ENSG00000165762.3 protein_coding OR4K2 2 OTTHUMG00000170624.2 +21339 chr14 HAVANA gene 19905917 19906600 684.0 + 0 ENSG00000258541.1 unprocessed_pseudogene OR4K4P 2 OTTHUMG00000170625.1 +21340 chr14 HAVANA gene 19908096 19908649 554.0 - 0 ENSG00000259016.1 processed_pseudogene AL391156.1 2 OTTHUMG00000170626.1 +21341 chr14 HAVANA gene 19920582 19921659 1078.0 + 0 ENSG00000176281.4 protein_coding OR4K5 2 OTTHUMG00000170627.1 +21342 chr14 HAVANA gene 19930917 19936757 1525.0 + 0 ENSG00000155249.5 protein_coding OR4K1 2 OTTHUMG00000170633.2 +21343 chr14 HAVANA gene 19954490 19957996 1506.0 + 0 ENSG00000258822.2 transcribed_unprocessed_pseudogene OR4K16P 2 OTTHUMG00000170634.2 +21344 chr14 HAVANA gene 19975444 19976659 1216.0 + 0 ENSG00000169488.6 protein_coding OR4K15 2 OTTHUMG00000170635.2 +21345 chr14 HAVANA gene 19999913 20004760 2778.0 + 0 ENSG00000196383.6 polymorphic_pseudogene OR4Q2 2 OTTHUMG00000168643.3 +21346 chr14 HAVANA gene 20014143 20019307 1245.0 - 0 ENSG00000169484.3 protein_coding OR4K14 2 OTTHUMG00000170780.2 +21347 chr14 HAVANA gene 20029399 20036038 5980.0 - 0 ENSG00000176253.3 protein_coding OR4K13 2 OTTHUMG00000170781.4 +21348 chr14 HAVANA gene 20043916 20044827 912.0 + 0 ENSG00000258899.1 unprocessed_pseudogene OR4U1P 2 OTTHUMG00000170636.1 +21349 chr14 HAVANA gene 20060045 20060983 939.0 + 0 ENSG00000176246.1 protein_coding OR4L1 2 OTTHUMG00000169492.2 +21350 chr14 ENSEMBL gene 20090130 20090227 98.0 + 0 ENSG00000252999.1 rRNA_pseudogene RNA5SP380 3 +21351 chr14 HAVANA gene 20093353 20094263 911.0 + 0 ENSG00000258641.1 unprocessed_pseudogene OR4T1P 2 OTTHUMG00000170782.1 +21352 chr14 HAVANA gene 20110739 20122199 5129.0 + 0 ENSG00000176230.6 protein_coding OR4K17 2 OTTHUMG00000170783.4 +21353 chr14 HAVANA gene 20138820 20145471 2187.0 + 0 ENSG00000184394.2 protein_coding OR4N5 2 OTTHUMG00000170784.3 +21354 chr14 HAVANA gene 20149232 20149745 514.0 + 0 ENSG00000259074.1 processed_pseudogene PSMB7P1 1 OTTHUMG00000170785.1 pseudo_consens +21355 chr14 HAVANA gene 20173632 20173813 182.0 - 0 ENSG00000259095.1 processed_pseudogene GTF2IP22 2 OTTHUMG00000170786.1 +21356 chr14 HAVANA gene 20179189 20180156 968.0 + 0 ENSG00000258468.1 unprocessed_pseudogene OR11G1P 2 OTTHUMG00000170848.1 +21357 chr14 HAVANA gene 20183925 20184298 374.0 - 0 ENSG00000284742.1 unprocessed_pseudogene OR11P1P 2 OTTHUMG00000192326.1 +21358 chr14 HAVANA gene 20190894 20201075 4513.0 + 0 ENSG00000196832.4 protein_coding OR11G2 2 OTTHUMG00000167700.4 +21359 chr14 HAVANA gene 20204606 20210498 1325.0 + 0 ENSG00000258625.2 transcribed_unprocessed_pseudogene OR11H5P 2 OTTHUMG00000170849.2 +21360 chr14 HAVANA gene 20223710 20224702 993.0 + 0 ENSG00000176219.3 protein_coding OR11H6 2 OTTHUMG00000170850.2 +21361 chr14 HAVANA gene 20229402 20230346 945.0 + 0 ENSG00000258806.2 polymorphic_pseudogene OR11H7 2 OTTHUMG00000170851.3 +21362 chr14 HAVANA gene 20239286 20244349 1657.0 + 0 ENSG00000176198.3 protein_coding OR11H4 2 OTTHUMG00000170852.2 +21363 chr14 HAVANA gene 20260480 20264308 3829.0 - 0 ENSG00000258768.2 lincRNA AL356019.2 2 OTTHUMG00000178843.1 overlapping_locus +21364 chr14 HAVANA gene 20256558 20305994 9705.0 - 0 ENSG00000136319.11 protein_coding TTC5 1 OTTHUMG00000029506.6 overlapping_locus +21365 chr14 HAVANA gene 20305730 20306811 748.0 + 0 ENSG00000258459.1 antisense AL356019.1 2 OTTHUMG00000170853.1 +21366 chr14 ENSEMBL gene 20323179 20323326 148.0 - 0 ENSG00000222489.1 snoRNA SNORA79B 3 +21367 chr14 ENSEMBL gene 20326450 20326526 77.0 - 0 ENSG00000238344.1 snoRNA SNORD126 3 +21368 chr14 HAVANA gene 20311368 20333312 3680.0 - 0 ENSG00000100814.17 protein_coding CCNB1IP1 1 OTTHUMG00000029509.5 ncRNA_host +21369 chr14 ENSEMBL gene 20343075 20343407 333.0 - 0 ENSG00000277209.1 ribozyme RPPH1 3 +21370 chr14 HAVANA gene 20343048 20343685 638.0 - 0 ENSG00000259001.3 antisense AL355075.4 2 OTTHUMG00000170789.2 ncRNA_host +21371 chr14 HAVANA gene 20344233 20346888 468.0 - 0 ENSG00000254846.1 antisense AL355075.1 1 OTTHUMG00000166107.1 +21372 chr14 HAVANA gene 20343582 20357905 4096.0 + 0 ENSG00000129484.13 protein_coding PARP2 1 OTTHUMG00000166106.3 +21373 chr14 HAVANA gene 20365667 20413429 11328.0 - 0 ENSG00000129566.12 protein_coding TEP1 1 OTTHUMG00000029515.6 +21374 chr14 ENSEMBL gene 20414987 20415098 112.0 + 0 ENSG00000200225.1 rRNA_pseudogene RNA5SP382 3 +21375 chr14 HAVANA gene 20425852 20436158 5501.0 - 0 ENSG00000185271.8 protein_coding KLHL33 2 OTTHUMG00000170982.3 +21376 chr14 HAVANA gene 20437982 20441268 992.0 + 0 ENSG00000259162.1 transcribed_unprocessed_pseudogene AL355075.5 2 OTTHUMG00000170983.1 +21377 chr14 HAVANA gene 20451305 20451918 478.0 + 0 ENSG00000258515.1 antisense AL355075.2 2 OTTHUMG00000170984.1 +21378 chr14 HAVANA gene 20446411 20455105 5037.0 - 0 ENSG00000092094.10 protein_coding OSGEP 1 OTTHUMG00000029543.5 +21379 chr14 HAVANA gene 20455191 20457772 1886.0 + 0 ENSG00000100823.11 protein_coding APEX1 1 OTTHUMG00000029544.6 +21380 chr14 HAVANA gene 20457719 20461612 3803.0 - 0 ENSG00000165782.10 protein_coding PIP4P1 1 OTTHUMG00000029545.5 +21381 chr14 HAVANA gene 20474789 20477089 492.0 - 0 ENSG00000258908.1 lincRNA AL355075.3 2 OTTHUMG00000170985.1 +21382 chr14 HAVANA gene 20468954 20477094 4139.0 + 0 ENSG00000198805.11 protein_coding PNP 1 OTTHUMG00000029546.4 +21383 chr14 HAVANA gene 20505537 20511169 1200.0 + 0 ENSG00000182545.6 protein_coding RNASE10 2 OTTHUMG00000170986.1 +21384 chr14 HAVANA gene 20524287 20525422 1136.0 - 0 ENSG00000258456.2 processed_pseudogene PTCD2P1 1 OTTHUMG00000170987.2 pseudo_consens +21385 chr14 HAVANA gene 20528115 20528959 845.0 - 0 ENSG00000258863.1 processed_pseudogene SETP1 1 OTTHUMG00000170988.1 pseudo_consens +21386 chr14 HAVANA gene 20556093 20560931 2710.0 - 0 ENSG00000188655.10 protein_coding RNASE9 2 OTTHUMG00000170989.1 +21387 chr14 HAVANA gene 20590193 20590823 631.0 - 0 ENSG00000258436.1 protein_coding RNASE12 2 OTTHUMG00000170991.1 overlapping_locus +21388 chr14 HAVANA gene 20587644 20607137 2685.0 + 0 ENSG00000258573.5 antisense AL163195.2 2 OTTHUMG00000171009.1 +21389 chr14 HAVANA gene 20582892 20609795 2467.0 - 0 ENSG00000259060.7 protein_coding AL163195.3 1 OTTHUMG00000186017.2 overlapping_locus +21390 chr14 HAVANA gene 20583559 20609884 1851.0 - 0 ENSG00000173464.14 protein_coding RNASE11 2 OTTHUMG00000170990.2 overlapping_locus +21391 chr14 HAVANA gene 20616644 20616991 348.0 - 0 ENSG00000239327.1 processed_pseudogene AL163195.1 1 OTTHUMG00000157646.1 pseudo_consens +21392 chr14 HAVANA gene 20640696 20641691 996.0 - 0 ENSG00000181803.3 protein_coding OR6S1 2 OTTHUMG00000171010.2 +21393 chr14 ENSEMBL gene 20679411 20679512 102.0 + 0 ENSG00000199461.1 misc_RNA RF00019 3 +21394 chr14 HAVANA gene 20684177 20698971 1430.0 + 0 ENSG00000214274.9 protein_coding ANG 1 OTTHUMG00000029576.3 overlapping_locus +21395 chr14 HAVANA gene 20684587 20700576 1498.0 + 0 ENSG00000259171.1 protein_coding AL163636.2 2 OTTHUMG00000187519.1 overlapping_locus +21396 chr14 HAVANA gene 20684100 20701215 2613.0 + 0 ENSG00000258818.3 protein_coding RNASE4 2 OTTHUMG00000029575.4 overlapping_locus +21397 chr14 HAVANA gene 20693480 20707120 915.0 - 0 ENSG00000258451.1 antisense AL163636.1 2 OTTHUMG00000171012.1 +21398 chr14 HAVANA gene 20720742 20723127 2104.0 - 0 ENSG00000259144.2 processed_pseudogene RANBP20P 1 OTTHUMG00000171013.2 pseudo_consens +21399 chr14 HAVANA gene 20734578 20735011 434.0 + 0 ENSG00000258963.1 unprocessed_pseudogene EDDM3DP 2 OTTHUMG00000171014.1 +21400 chr14 HAVANA gene 20745892 20748380 927.0 + 0 ENSG00000181562.4 protein_coding EDDM3A 2 OTTHUMG00000029581.3 +21401 chr14 HAVANA gene 20768427 20770948 896.0 + 0 ENSG00000181552.3 protein_coding EDDM3B 2 OTTHUMG00000029583.2 +21402 chr14 HAVANA gene 20781051 20782467 1061.0 + 0 ENSG00000169413.2 protein_coding RNASE6 2 OTTHUMG00000029585.2 +21403 chr14 HAVANA gene 20783888 20784293 294.0 + 0 ENSG00000258810.1 antisense AL133371.2 2 OTTHUMG00000171036.1 +21404 chr14 HAVANA gene 20801228 20803278 1506.0 - 0 ENSG00000129538.13 protein_coding RNASE1 2 OTTHUMG00000029603.3 +21405 chr14 HAVANA gene 20870278 20873592 583.0 - 0 ENSG00000259130.1 lincRNA AL133371.3 2 OTTHUMG00000171037.1 +21406 chr14 HAVANA gene 20874305 20875768 764.0 - 0 ENSG00000258642.1 antisense AL133371.1 2 OTTHUMG00000171038.1 +21407 chr14 HAVANA gene 20891399 20892348 720.0 + 0 ENSG00000169397.3 protein_coding RNASE3 2 OTTHUMG00000029604.2 +21408 chr14 HAVANA gene 20919361 20920299 337.0 + 0 ENSG00000136315.4 lincRNA AL355922.1 2 OTTHUMG00000171041.1 +21409 chr14 HAVANA gene 20916766 20928580 449.0 - 0 ENSG00000258772.1 lincRNA AL355922.3 2 OTTHUMG00000171040.1 overlapping_locus +21410 chr14 HAVANA gene 20897985 20936255 351.0 - 0 ENSG00000258918.1 lincRNA AL355922.4 2 OTTHUMG00000171039.1 overlapping_locus +21411 chr14 HAVANA gene 20955452 20956436 755.0 + 0 ENSG00000169385.2 protein_coding RNASE2 2 OTTHUMG00000029607.2 +21412 chr14 ENSEMBL gene 20963579 20963867 289.0 + 0 ENSG00000243817.3 misc_RNA RN7SL189P 3 +21413 chr14 HAVANA gene 20983155 20985066 578.0 - 0 ENSG00000258599.2 processed_pseudogene AL355922.2 2 OTTHUMG00000171042.2 +21414 chr14 HAVANA gene 20989770 20997035 4449.0 + 0 ENSG00000165792.17 protein_coding METTL17 1 OTTHUMG00000029610.7 +21415 chr14 HAVANA gene 20999255 21001871 1575.0 + 0 ENSG00000165794.9 protein_coding SLC39A2 2 OTTHUMG00000029616.3 +21416 chr14 HAVANA gene 20995837 21014822 1936.0 - 0 ENSG00000258471.2 antisense AL161668.3 2 OTTHUMG00000171043.2 +21417 chr14 ENSEMBL gene 21023314 21023386 73.0 - 0 ENSG00000284122.1 miRNA MIR6717 3 +21418 chr14 HAVANA gene 21024172 21029271 593.0 + 0 ENSG00000258604.1 lincRNA AL161668.4 2 OTTHUMG00000029642.5 overlapping_locus +21419 chr14 HAVANA gene 21032818 21033895 492.0 + 0 ENSG00000255472.1 antisense AL161668.2 2 OTTHUMG00000166117.1 overlapping_locus +21420 chr14 HAVANA gene 21032820 21034785 1607.0 - 0 ENSG00000206150.3 protein_coding RNASE13 2 OTTHUMG00000171110.1 overlapping_locus +21421 chr14 HAVANA gene 21024109 21036276 2475.0 + 0 ENSG00000179636.14 protein_coding TPPP2 1 OTTHUMG00000171071.2 overlapping_locus +21422 chr14 HAVANA gene 21042226 21044234 1499.0 + 0 ENSG00000165799.4 protein_coding RNASE7 2 OTTHUMG00000171358.1 +21423 chr14 HAVANA gene 21057822 21058455 634.0 + 0 ENSG00000173431.2 protein_coding RNASE8 2 OTTHUMG00000029645.3 +21424 chr14 HAVANA gene 21016763 21070872 7550.0 - 0 ENSG00000165795.23 protein_coding NDRG2 1 OTTHUMG00000029619.9 ncRNA_host,overlapping_locus +21425 chr14 HAVANA gene 21070270 21090240 8189.0 + 0 ENSG00000165801.9 protein_coding ARHGEF40 2 OTTHUMG00000171359.2 +21426 chr14 HAVANA gene 21098937 21103724 1961.0 + 0 ENSG00000232070.8 protein_coding TMEM253 1 OTTHUMG00000171361.3 +21427 chr14 HAVANA gene 21090046 21104722 6679.0 - 0 ENSG00000165804.15 protein_coding ZNF219 2 OTTHUMG00000029647.6 +21428 chr14 HAVANA gene 21110295 21113472 2049.0 - 0 ENSG00000258722.2 processed_pseudogene CKAP2P1 1 OTTHUMG00000171363.2 pseudo_consens +21429 chr14 ENSEMBL gene 21113639 21113745 107.0 - 0 ENSG00000200102.1 snRNA RNU6-252P 3 +21430 chr14 HAVANA gene 21108043 21116703 358.0 + 0 ENSG00000178107.2 lincRNA AL161668.1 2 OTTHUMG00000171362.1 +21431 chr14 HAVANA gene 21148370 21159060 8409.0 - 0 ENSG00000169327.5 protein_coding OR5AU1 2 OTTHUMG00000170753.2 +21432 chr14 HAVANA gene 21162513 21163743 1231.0 + 0 ENSG00000259102.2 processed_pseudogene SMARCE1P3 1 OTTHUMG00000170754.2 pseudo_consens +21433 chr14 HAVANA gene 21184341 21184959 619.0 - 0 ENSG00000258906.2 processed_pseudogene AL157687.1 2 OTTHUMG00000170755.2 +21434 chr14 HAVANA gene 21200079 21206900 5715.0 - 0 ENSG00000258441.1 processed_transcript LINC00641 2 OTTHUMG00000170756.1 +21435 chr14 HAVANA gene 21209136 21269494 7309.0 - 0 ENSG00000092199.17 protein_coding HNRNPC 2 OTTHUMG00000170757.3 +21436 chr14 HAVANA gene 21287939 21351301 5470.0 + 0 ENSG00000092200.12 protein_coding RPGRIP1 1 OTTHUMG00000170758.2 +21437 chr14 HAVANA gene 21351472 21384266 7151.0 - 0 ENSG00000092201.9 protein_coding SUPT16H 2 OTTHUMG00000029685.3 +21438 chr14 HAVANA gene 21384292 21384920 629.0 + 0 ENSG00000260830.1 antisense AL135744.1 2 OTTHUMG00000172910.1 +21439 chr14 ENSEMBL gene 21392150 21392253 104.0 - 0 ENSG00000199436.1 snoRNA SNORD9 3 +21440 chr14 ENSEMBL gene 21397292 21397401 110.0 - 0 ENSG00000200785.1 snoRNA SNORD8 3 +21441 chr14 HAVANA gene 21398925 21399282 358.0 + 0 ENSG00000241035.2 processed_pseudogene AL161747.1 1 OTTHUMG00000158015.2 pseudo_consens +21442 chr14 HAVANA gene 21419620 21419960 341.0 + 0 ENSG00000258870.1 processed_pseudogene EIF4EBP1P1 1 OTTHUMG00000170805.1 pseudo_consens +21443 chr14 ENSEMBL gene 21429508 21429806 299.0 - 0 ENSG00000274475.1 misc_RNA RN7SL650P 3 +21444 chr14 HAVANA gene 21385194 21456126 9781.0 - 0 ENSG00000100888.13 protein_coding CHD8 1 OTTHUMG00000170759.6 ncRNA_host +21445 chr14 HAVANA gene 21459020 21476973 3610.0 - 0 ENSG00000129472.14 protein_coding RAB2B 2 OTTHUMG00000029693.8 +21446 chr14 HAVANA gene 21476597 21499175 7091.0 + 0 ENSG00000092203.13 protein_coding TOX4 1 OTTHUMG00000150278.5 +21447 chr14 HAVANA gene 21498133 21511375 5894.0 - 0 ENSG00000165819.11 protein_coding METTL3 1 OTTHUMG00000168825.5 +21448 chr14 HAVANA gene 21521083 21522660 472.0 + 0 ENSG00000257096.1 antisense AL161747.2 2 OTTHUMG00000168827.1 +21449 chr14 HAVANA gene 21521081 21537216 5382.0 - 0 ENSG00000165821.11 protein_coding SALL2 1 OTTHUMG00000168826.6 +21450 chr14 HAVANA gene 21563819 21565084 1266.0 + 0 ENSG00000256737.1 processed_pseudogene RBBP4P5 1 OTTHUMG00000168828.1 pseudo_consens +21451 chr14 HAVANA gene 21568520 21580076 2640.0 - 0 ENSG00000169208.2 protein_coding OR10G3 2 OTTHUMG00000168886.3 +21452 chr14 HAVANA gene 21585290 21586280 991.0 - 0 ENSG00000256081.2 processed_pseudogene AC243972.2 1 OTTHUMG00000168887.3 pseudo_consens +21453 chr14 HAVANA gene 21601882 21602825 944.0 - 0 ENSG00000273586.2 unprocessed_pseudogene OR10G1P 2 OTTHUMG00000188541.2 +21454 chr14 HAVANA gene 21611924 21612381 458.0 - 0 ENSG00000256385.1 processed_pseudogene UBE2NP1 1 OTTHUMG00000168889.2 pseudo_consens +21455 chr14 HAVANA gene 21621838 21622567 392.0 + 0 ENSG00000255569.1 TR_V_gene TRAV1-1 2 OTTHUMG00000168977.2 +21456 chr14 HAVANA gene 21633836 21634940 1105.0 - 0 ENSG00000255582.1 protein_coding OR10G2 2 OTTHUMG00000168890.2 +21457 chr14 HAVANA gene 21642889 21643578 402.0 + 0 ENSG00000256553.1 TR_V_gene TRAV1-2 2 OTTHUMG00000168978.3 +21458 chr14 HAVANA gene 21649728 21650337 610.0 - 0 ENSG00000255664.1 processed_pseudogene ARL6IP1P1 1 OTTHUMG00000168891.1 pseudo_consens +21459 chr14 HAVANA gene 21653835 21667642 2855.0 + 0 ENSG00000221977.2 protein_coding OR4E2 2 OTTHUMG00000168979.4 +21460 chr14 HAVANA gene 21667940 21673818 3742.0 - 0 ENSG00000276240.2 protein_coding OR4E1 2 OTTHUMG00000188249.2 +21461 chr14 HAVANA gene 21698954 21699151 198.0 - 0 ENSG00000256350.1 unprocessed_pseudogene AC243972.3 2 OTTHUMG00000168892.2 +21462 chr14 HAVANA gene 21712321 21712843 348.0 + 0 ENSG00000211776.2 TR_V_gene TRAV2 2 OTTHUMG00000168980.2 +21463 chr14 HAVANA gene 21714795 21716262 570.0 - 0 ENSG00000248358.2 lincRNA AC243972.1 2 OTTHUMG00000168893.1 +21464 chr14 HAVANA gene 21723713 21724321 519.0 + 0 ENSG00000211777.2 TR_V_gene TRAV3 2 OTTHUMG00000168981.2 +21465 chr14 HAVANA gene 21736152 21736982 395.0 + 0 ENSG00000211778.2 TR_V_gene TRAV4 2 OTTHUMG00000168982.2 +21466 chr14 HAVANA gene 21749178 21749705 352.0 + 0 ENSG00000211779.3 TR_V_gene TRAV5 2 OTTHUMG00000168983.2 +21467 chr14 HAVANA gene 21750269 21751546 1278.0 + 0 ENSG00000240954.1 processed_pseudogene RPL4P1 1 OTTHUMG00000157660.2 pseudo_consens +21468 chr14 HAVANA gene 21768489 21769080 404.0 + 0 ENSG00000211780.3 TR_V_gene TRAV6 2 OTTHUMG00000168984.3 +21469 chr14 HAVANA gene 21782993 21783503 337.0 + 0 ENSG00000211781.3 TR_V_gene TRAV7 2 OTTHUMG00000168985.2 +21470 chr14 HAVANA gene 21797287 21797886 473.0 + 0 ENSG00000211782.2 TR_V_gene TRAV8-1 2 OTTHUMG00000168986.2 +21471 chr14 HAVANA gene 21811502 21811977 338.0 + 0 ENSG00000211783.3 TR_V_gene TRAV9-1 2 OTTHUMG00000168987.2 +21472 chr14 HAVANA gene 21825472 21826075 379.0 + 0 ENSG00000211784.2 TR_V_gene TRAV10 2 OTTHUMG00000168988.3 +21473 chr14 HAVANA gene 21829539 21830070 339.0 + 0 ENSG00000256474.1 TR_V_pseudogene TRAV11 2 OTTHUMG00000168989.1 +21474 chr14 HAVANA gene 21841240 21841774 340.0 + 0 ENSG00000211785.1 TR_V_gene TRAV12-1 2 OTTHUMG00000168990.2 +21475 chr14 HAVANA gene 21846537 21847221 566.0 + 0 ENSG00000211786.3 TR_V_gene TRAV8-2 2 OTTHUMG00000168991.3 +21476 chr14 HAVANA gene 21852558 21853006 341.0 + 0 ENSG00000211787.1 TR_V_gene TRAV8-3 2 OTTHUMG00000168992.2 +21477 chr14 HAVANA gene 21868839 21869365 360.0 + 0 ENSG00000211788.2 TR_V_gene TRAV13-1 2 OTTHUMG00000168993.2 +21478 chr14 HAVANA gene 21887857 21888502 445.0 + 0 ENSG00000211789.2 TR_V_gene TRAV12-2 2 OTTHUMG00000168994.2 +21479 chr14 HAVANA gene 21894433 21895030 469.0 + 0 ENSG00000211790.2 TR_V_gene TRAV8-4 2 OTTHUMG00000168995.2 +21480 chr14 HAVANA gene 21903077 21904598 341.0 + 0 ENSG00000256379.2 TR_V_pseudogene TRAV8-5 2 OTTHUMG00000168996.2 +21481 chr14 HAVANA gene 21918188 21918756 410.0 + 0 ENSG00000211791.2 TR_V_gene TRAV13-2 2 OTTHUMG00000168997.2 +21482 chr14 HAVANA gene 21924063 21924651 425.0 + 0 ENSG00000211792.2 TR_V_gene TRAV14DV4 2 OTTHUMG00000168998.3 +21483 chr14 HAVANA gene 21941128 21941657 394.0 + 0 ENSG00000211793.2 TR_V_gene TRAV9-2 2 OTTHUMG00000170637.3 +21484 chr14 HAVANA gene 21950406 21950654 249.0 + 0 ENSG00000258482.1 TR_V_pseudogene TRAV15 2 OTTHUMG00000170638.1 +21485 chr14 HAVANA gene 21962819 21963042 224.0 - 0 ENSG00000258557.1 processed_pseudogene AC245505.1 2 OTTHUMG00000170639.1 +21486 chr14 HAVANA gene 21965451 21966061 399.0 + 0 ENSG00000211794.3 TR_V_gene TRAV12-3 2 OTTHUMG00000170640.2 +21487 chr14 HAVANA gene 21978459 21979120 561.0 + 0 ENSG00000211795.3 TR_V_gene TRAV8-6 2 OTTHUMG00000170641.3 +21488 chr14 HAVANA gene 21990496 21990938 329.0 + 0 ENSG00000211796.1 TR_V_gene TRAV16 2 OTTHUMG00000170642.2 +21489 chr14 HAVANA gene 21997539 21998168 484.0 + 0 ENSG00000211797.2 TR_V_gene TRAV17 2 OTTHUMG00000170643.2 +21490 chr14 HAVANA gene 22003106 22003673 440.0 + 0 ENSG00000211798.3 TR_V_gene TRAV18 2 OTTHUMG00000170644.2 +21491 chr14 HAVANA gene 22007512 22008181 467.0 + 0 ENSG00000211799.3 TR_V_gene TRAV19 2 OTTHUMG00000170645.2 +21492 chr14 HAVANA gene 22011910 22014964 3055.0 + 0 ENSG00000258705.2 processed_pseudogene AC245505.2 2 OTTHUMG00000170646.3 +21493 chr14 HAVANA gene 22040594 22041153 406.0 + 0 ENSG00000211800.3 TR_V_gene TRAV20 2 OTTHUMG00000170647.3 +21494 chr14 HAVANA gene 22052514 22053056 343.0 + 0 ENSG00000211801.3 TR_V_gene TRAV21 2 OTTHUMG00000170648.2 +21495 chr14 HAVANA gene 22066016 22066373 358.0 + 0 ENSG00000276428.1 processed_pseudogene AC245505.3 2 OTTHUMG00000187833.1 +21496 chr14 HAVANA gene 22070557 22071208 464.0 + 0 ENSG00000211802.3 TR_V_gene TRAV22 2 OTTHUMG00000170649.2 +21497 chr14 HAVANA gene 22086407 22086961 409.0 + 0 ENSG00000211803.2 TR_V_gene TRAV23DV6 2 OTTHUMG00000170650.3 +21498 chr14 HAVANA gene 22096032 22096619 365.0 + 0 ENSG00000211804.3 TR_V_gene TRDV1 2 OTTHUMG00000170651.2 +21499 chr14 HAVANA gene 22105343 22105846 343.0 + 0 ENSG00000211805.1 TR_V_gene TRAV24 2 OTTHUMG00000170652.2 +21500 chr14 HAVANA gene 22112347 22113031 403.0 + 0 ENSG00000211806.2 TR_V_gene TRAV25 2 OTTHUMG00000170653.2 +21501 chr14 HAVANA gene 22123318 22124285 537.0 + 0 ENSG00000211807.3 TR_V_gene TRAV26-1 2 OTTHUMG00000170654.3 +21502 chr14 HAVANA gene 22132553 22133034 341.0 + 0 ENSG00000211808.3 TR_V_gene TRAV8-7 2 OTTHUMG00000170655.3 +21503 chr14 HAVANA gene 22147995 22148633 425.0 + 0 ENSG00000211809.2 TR_V_gene TRAV27 2 OTTHUMG00000170656.3 +21504 chr14 HAVANA gene 22155079 22155638 323.0 + 0 ENSG00000258835.1 TR_V_pseudogene TRAV28 2 OTTHUMG00000170657.2 +21505 chr14 HAVANA gene 22163238 22163870 469.0 + 0 ENSG00000211810.3 TR_V_gene TRAV29DV5 2 OTTHUMG00000170658.3 +21506 chr14 HAVANA gene 22168429 22168988 337.0 + 0 ENSG00000259092.1 TR_V_gene TRAV30 2 OTTHUMG00000170659.3 +21507 chr14 HAVANA gene 22177273 22177864 342.0 + 0 ENSG00000249048.2 TR_V_pseudogene TRAV31 2 OTTHUMG00000170660.2 +21508 chr14 HAVANA gene 22185562 22186057 340.0 + 0 ENSG00000258905.1 TR_V_pseudogene TRAV32 2 OTTHUMG00000170661.1 +21509 chr14 HAVANA gene 22190158 22190713 338.0 + 0 ENSG00000258812.1 TR_V_pseudogene TRAV33 2 OTTHUMG00000170662.1 +21510 chr14 HAVANA gene 22202583 22203368 327.0 + 0 ENSG00000211812.1 TR_V_gene TRAV26-2 2 OTTHUMG00000170663.2 +21511 chr14 HAVANA gene 22207522 22208129 349.0 + 0 ENSG00000211813.2 TR_V_gene TRAV34 2 OTTHUMG00000170664.2 +21512 chr14 HAVANA gene 22221896 22222475 330.0 + 0 ENSG00000211814.1 TR_V_pseudogene TRAV35 2 OTTHUMG00000170665.2 +21513 chr14 HAVANA gene 22226746 22227254 356.0 + 0 ENSG00000211815.3 TR_V_gene TRAV36DV7 2 OTTHUMG00000170666.3 +21514 chr14 HAVANA gene 22265749 22266264 342.0 + 0 ENSG00000259068.1 TR_V_pseudogene TRAV37 2 OTTHUMG00000170836.1 +21515 chr14 HAVANA gene 22271968 22272563 353.0 + 0 ENSG00000211816.2 TR_V_gene TRAV38-1 2 OTTHUMG00000170837.2 +21516 chr14 HAVANA gene 22281105 22281748 395.0 + 0 ENSG00000211817.2 TR_V_gene TRAV38-2DV8 2 OTTHUMG00000170838.2 +21517 chr14 HAVANA gene 22304054 22304553 331.0 + 0 ENSG00000211818.1 TR_V_gene TRAV39 2 OTTHUMG00000170839.2 +21518 chr14 HAVANA gene 22314490 22314919 317.0 + 0 ENSG00000211819.3 TR_V_gene TRAV40 2 OTTHUMG00000170840.2 +21519 chr14 HAVANA gene 22320188 22320691 336.0 + 0 ENSG00000211820.1 TR_V_gene TRAV41 2 OTTHUMG00000170841.2 +21520 chr14 HAVANA gene 22332922 22334685 851.0 - 0 ENSG00000256221.1 processed_pseudogene AC244502.2 1 OTTHUMG00000168894.1 pseudo_consens +21521 chr14 HAVANA gene 22417836 22418657 457.0 + 0 ENSG00000259042.2 lincRNA AC244502.3 1 OTTHUMG00000170842.2 +21522 chr14 HAVANA gene 22422371 22423042 520.0 + 0 ENSG00000211821.2 TR_V_gene TRDV2 2 OTTHUMG00000170843.2 +21523 chr14 HAVANA gene 22438547 22438554 8.0 + 0 ENSG00000223997.1 TR_D_gene TRDD1 2 OTTHUMG00000170844.2 +21524 chr14 HAVANA gene 22439007 22439015 9.0 + 0 ENSG00000237235.2 TR_D_gene TRDD2 2 OTTHUMG00000170845.2 +21525 chr14 HAVANA gene 22449113 22449125 13.0 + 0 ENSG00000228985.1 TR_D_gene TRDD3 2 OTTHUMG00000170846.2 +21526 chr14 HAVANA gene 22450089 22450139 51.0 + 0 ENSG00000211825.1 TR_J_gene TRDJ1 2 OTTHUMG00000170847.3 +21527 chr14 HAVANA gene 22455249 22455296 48.0 + 0 ENSG00000211826.1 TR_J_gene TRDJ4 2 OTTHUMG00000170902.3 +21528 chr14 HAVANA gene 22456689 22456742 54.0 + 0 ENSG00000211827.1 TR_J_gene TRDJ2 2 OTTHUMG00000170903.3 +21529 chr14 HAVANA gene 22459098 22459156 59.0 + 0 ENSG00000211828.1 TR_J_gene TRDJ3 2 OTTHUMG00000170904.3 +21530 chr14 HAVANA gene 22462932 22465787 720.0 + 0 ENSG00000211829.9 TR_C_gene TRDC 2 OTTHUMG00000170905.1 +21531 chr14 HAVANA gene 22469041 22469698 425.0 - 0 ENSG00000256590.2 TR_V_gene TRDV3 2 OTTHUMG00000168896.3 overlapping_locus +21532 chr14 HAVANA gene 22475316 22475375 60.0 + 0 ENSG00000211831.2 TR_J_gene TRAJ61 2 OTTHUMG00000170906.3 +21533 chr14 HAVANA gene 22476306 22476362 57.0 + 0 ENSG00000249446.2 TR_J_pseudogene TRAJ60 2 OTTHUMG00000170907.1 +21534 chr14 HAVANA gene 22476553 22476606 54.0 + 0 ENSG00000211832.2 TR_J_gene TRAJ59 2 OTTHUMG00000170908.3 +21535 chr14 HAVANA gene 22477707 22477769 63.0 + 0 ENSG00000211833.1 TR_J_gene TRAJ58 2 OTTHUMG00000170909.3 +21536 chr14 HAVANA gene 22478872 22478934 63.0 + 0 ENSG00000211834.1 TR_J_gene TRAJ57 2 OTTHUMG00000170910.3 +21537 chr14 HAVANA gene 22479521 22479582 62.0 + 0 ENSG00000211835.1 TR_J_gene TRAJ56 2 OTTHUMG00000170911.3 +21538 chr14 HAVANA gene 22481697 22481753 57.0 + 0 ENSG00000250688.1 TR_J_pseudogene TRAJ55 2 OTTHUMG00000170912.1 +21539 chr14 HAVANA gene 22482287 22482346 60.0 + 0 ENSG00000211836.1 TR_J_gene TRAJ54 2 OTTHUMG00000170913.3 +21540 chr14 HAVANA gene 22380680 22482959 3284.0 - 0 ENSG00000251002.7 processed_transcript AC244502.1 2 OTTHUMG00000168895.3 overlapping_locus +21541 chr14 HAVANA gene 22483004 22483069 66.0 + 0 ENSG00000211837.1 TR_J_gene TRAJ53 2 OTTHUMG00000170914.3 +21542 chr14 HAVANA gene 22486228 22486296 69.0 + 0 ENSG00000211838.1 TR_J_gene TRAJ52 2 OTTHUMG00000170915.3 +21543 chr14 HAVANA gene 22487183 22487245 63.0 + 0 ENSG00000248366.1 TR_J_pseudogene TRAJ51 2 OTTHUMG00000170916.1 +21544 chr14 HAVANA gene 22488593 22488652 60.0 + 0 ENSG00000211839.1 TR_J_gene TRAJ50 2 OTTHUMG00000170917.3 +21545 chr14 HAVANA gene 22489488 22489543 56.0 + 0 ENSG00000211840.1 TR_J_gene TRAJ49 2 OTTHUMG00000170918.3 +21546 chr14 HAVANA gene 22490491 22490553 63.0 + 0 ENSG00000211841.1 TR_J_gene TRAJ48 2 OTTHUMG00000170919.3 +21547 chr14 HAVANA gene 22492851 22492907 57.0 + 0 ENSG00000211842.1 TR_J_gene TRAJ47 2 OTTHUMG00000170920.3 +21548 chr14 HAVANA gene 22493403 22493465 63.0 + 0 ENSG00000211843.1 TR_J_gene TRAJ46 2 OTTHUMG00000170921.3 +21549 chr14 HAVANA gene 22493925 22493990 66.0 + 0 ENSG00000211844.1 TR_J_gene TRAJ45 2 OTTHUMG00000170922.3 +21550 chr14 HAVANA gene 22494821 22494883 63.0 + 0 ENSG00000211845.1 TR_J_gene TRAJ44 2 OTTHUMG00000170923.3 +21551 chr14 HAVANA gene 22495913 22495966 54.0 + 0 ENSG00000211846.1 TR_J_gene TRAJ43 2 OTTHUMG00000170924.3 +21552 chr14 HAVANA gene 22496887 22496952 66.0 + 0 ENSG00000211847.1 TR_J_gene TRAJ42 2 OTTHUMG00000170925.3 +21553 chr14 HAVANA gene 22497657 22497718 62.0 + 0 ENSG00000211848.1 TR_J_gene TRAJ41 2 OTTHUMG00000170926.3 +21554 chr14 HAVANA gene 22499689 22499749 61.0 + 0 ENSG00000211849.1 TR_J_gene TRAJ40 2 OTTHUMG00000170927.2 +21555 chr14 HAVANA gene 22501601 22501663 63.0 + 0 ENSG00000211850.1 TR_J_gene TRAJ39 2 OTTHUMG00000170928.3 +21556 chr14 HAVANA gene 22502231 22502292 62.0 + 0 ENSG00000211851.1 TR_J_gene TRAJ38 2 OTTHUMG00000170929.3 +21557 chr14 HAVANA gene 22503750 22503814 65.0 + 0 ENSG00000278661.1 TR_J_gene TRAJ37 2 OTTHUMG00000188542.3 +21558 chr14 HAVANA gene 22505110 22505167 58.0 + 0 ENSG00000276699.1 TR_J_gene TRAJ36 2 OTTHUMG00000188544.3 +21559 chr14 HAVANA gene 22506644 22506702 59.0 + 0 ENSG00000211854.1 TR_J_gene TRAJ35 2 OTTHUMG00000170932.3 +21560 chr14 HAVANA gene 22507666 22507723 58.0 + 0 ENSG00000211855.1 TR_J_gene TRAJ34 2 OTTHUMG00000170933.2 +21561 chr14 HAVANA gene 22508602 22508658 57.0 + 0 ENSG00000211856.1 TR_J_gene TRAJ33 2 OTTHUMG00000170934.3 +21562 chr14 HAVANA gene 22509341 22509406 66.0 + 0 ENSG00000211857.1 TR_J_gene TRAJ32 2 OTTHUMG00000170935.4 +21563 chr14 HAVANA gene 22510968 22511024 57.0 + 0 ENSG00000211858.1 TR_J_gene TRAJ31 2 OTTHUMG00000170936.3 +21564 chr14 HAVANA gene 22512852 22512908 57.0 + 0 ENSG00000211859.1 TR_J_gene TRAJ30 2 OTTHUMG00000170937.3 +21565 chr14 HAVANA gene 22513939 22513998 60.0 + 0 ENSG00000211860.1 TR_J_gene TRAJ29 2 OTTHUMG00000170938.3 +21566 chr14 HAVANA gene 22515623 22515688 66.0 + 0 ENSG00000211861.1 TR_J_gene TRAJ28 2 OTTHUMG00000170939.3 +21567 chr14 HAVANA gene 22516273 22516331 59.0 + 0 ENSG00000211862.1 TR_J_gene TRAJ27 2 OTTHUMG00000170940.3 +21568 chr14 HAVANA gene 22518446 22518505 60.0 + 0 ENSG00000211863.1 TR_J_gene TRAJ26 2 OTTHUMG00000170941.3 +21569 chr14 HAVANA gene 22518812 22518871 60.0 + 0 ENSG00000211864.2 TR_J_gene TRAJ25 2 OTTHUMG00000170942.3 +21570 chr14 HAVANA gene 22519969 22520031 63.0 + 0 ENSG00000211865.1 TR_J_gene TRAJ24 2 OTTHUMG00000170943.4 +21571 chr14 HAVANA gene 22520416 22520478 63.0 + 0 ENSG00000211866.1 TR_J_gene TRAJ23 2 OTTHUMG00000170944.3 +21572 chr14 HAVANA gene 22522040 22522102 63.0 + 0 ENSG00000211867.1 TR_J_gene TRAJ22 2 OTTHUMG00000170945.3 +21573 chr14 HAVANA gene 22523600 22523654 55.0 + 0 ENSG00000211868.1 TR_J_gene TRAJ21 2 OTTHUMG00000170946.2 +21574 chr14 HAVANA gene 22524325 22524381 57.0 + 0 ENSG00000211869.1 TR_J_gene TRAJ20 2 OTTHUMG00000170947.3 +21575 chr14 HAVANA gene 22525263 22525322 60.0 + 0 ENSG00000211870.1 TR_J_gene TRAJ19 2 OTTHUMG00000170948.3 +21576 chr14 HAVANA gene 22525650 22525715 66.0 + 0 ENSG00000211871.1 TR_J_gene TRAJ18 2 OTTHUMG00000170949.3 +21577 chr14 HAVANA gene 22526844 22526906 63.0 + 0 ENSG00000211872.1 TR_J_gene TRAJ17 2 OTTHUMG00000170950.3 +21578 chr14 HAVANA gene 22528527 22528586 60.0 + 0 ENSG00000211873.1 TR_J_gene TRAJ16 2 OTTHUMG00000170951.4 +21579 chr14 HAVANA gene 22530327 22530378 52.0 + 0 ENSG00000211875.1 TR_J_gene TRAJ14 2 OTTHUMG00000170953.2 +21580 chr14 HAVANA gene 22531076 22531138 63.0 + 0 ENSG00000211876.1 TR_J_gene TRAJ13 2 OTTHUMG00000170954.4 +21581 chr14 HAVANA gene 22531939 22531998 60.0 + 0 ENSG00000211877.1 TR_J_gene TRAJ12 2 OTTHUMG00000170955.3 +21582 chr14 HAVANA gene 22532502 22532561 60.0 + 0 ENSG00000211878.1 TR_J_gene TRAJ11 2 OTTHUMG00000170956.3 +21583 chr14 HAVANA gene 22533497 22533560 64.0 + 0 ENSG00000211879.1 TR_J_gene TRAJ10 2 OTTHUMG00000170957.2 +21584 chr14 HAVANA gene 22535554 22535614 61.0 + 0 ENSG00000211880.1 TR_J_gene TRAJ9 2 OTTHUMG00000170958.2 +21585 chr14 HAVANA gene 22536145 22536204 60.0 + 0 ENSG00000211881.1 TR_J_pseudogene TRAJ8 2 OTTHUMG00000170959.2 +21586 chr14 HAVANA gene 22537622 22537680 59.0 + 0 ENSG00000211882.1 TR_J_gene TRAJ7 2 OTTHUMG00000170960.3 +21587 chr14 HAVANA gene 22539073 22539134 62.0 + 0 ENSG00000211883.1 TR_J_gene TRAJ6 2 OTTHUMG00000170961.3 +21588 chr14 HAVANA gene 22540247 22540306 60.0 + 0 ENSG00000211884.1 TR_J_gene TRAJ5 2 OTTHUMG00000170962.3 +21589 chr14 HAVANA gene 22542199 22542261 63.0 + 0 ENSG00000211885.1 TR_J_gene TRAJ4 2 OTTHUMG00000170963.3 +21590 chr14 HAVANA gene 22543179 22543240 62.0 + 0 ENSG00000211886.1 TR_J_gene TRAJ3 2 OTTHUMG00000170964.3 +21591 chr14 HAVANA gene 22544071 22544136 66.0 + 0 ENSG00000211887.2 TR_J_gene TRAJ2 2 OTTHUMG00000170965.3 +21592 chr14 HAVANA gene 22545037 22545098 62.0 + 0 ENSG00000211888.2 TR_J_gene TRAJ1 2 OTTHUMG00000170966.3 +21593 chr14 HAVANA gene 22547506 22552154 976.0 + 0 ENSG00000277734.7 TR_C_gene TRAC 2 OTTHUMG00000028683.7 +21594 chr14 HAVANA gene 22556311 22557062 386.0 - 0 ENSG00000259054.1 lincRNA LINC02332 2 OTTHUMG00000170967.2 +21595 chr14 HAVANA gene 22556640 22559037 781.0 + 0 ENSG00000259003.1 lincRNA AC243965.1 1 OTTHUMG00000170968.2 +21596 chr14 HAVANA gene 22564905 22589269 808.0 - 0 ENSG00000129562.10 protein_coding DAD1 1 OTTHUMG00000028685.5 +21597 chr14 HAVANA gene 22595808 22598946 2671.0 - 0 ENSG00000275552.1 antisense AC243965.2 2 OTTHUMG00000188279.1 +21598 chr14 HAVANA gene 22598237 22613215 4070.0 + 0 ENSG00000100439.10 protein_coding ABHD4 1 OTTHUMG00000028686.7 +21599 chr14 HAVANA gene 22630929 22644352 4165.0 - 0 ENSG00000255804.2 protein_coding OR6J1 2 OTTHUMG00000168897.4 +21600 chr14 HAVANA gene 22694098 22694535 438.0 - 0 ENSG00000242061.1 processed_pseudogene AL160314.1 1 OTTHUMG00000157667.1 pseudo_consens +21601 chr14 HAVANA gene 22702143 22703065 923.0 + 0 ENSG00000235213.1 unprocessed_pseudogene OR6E1P 2 OTTHUMG00000154330.1 +21602 chr14 HAVANA gene 22723476 22726572 767.0 - 0 ENSG00000258823.1 transcribed_unprocessed_pseudogene AL160314.3 2 OTTHUMG00000170993.2 overlapping_locus +21603 chr14 ENSEMBL gene 22756761 22756829 69.0 - 0 ENSG00000212302.1 snoRNA RF00588 3 +21604 chr14 HAVANA gene 22701476 22766562 2513.0 - 0 ENSG00000258458.6 processed_transcript AL160314.2 2 OTTHUMG00000170992.2 ncRNA_host,overlapping_locus +21605 chr14 HAVANA gene 22766522 22773041 4497.0 + 0 ENSG00000155463.12 protein_coding OXA1L 1 OTTHUMG00000028691.9 +21606 chr14 HAVANA gene 22773222 22829820 5131.0 - 0 ENSG00000155465.18 protein_coding SLC7A7 1 OTTHUMG00000028692.13 +21607 chr14 HAVANA gene 22829879 22835037 3213.0 + 0 ENSG00000172590.18 protein_coding MRPL52 1 OTTHUMG00000028703.11 +21608 chr14 HAVANA gene 22836557 22849027 4464.0 + 0 ENSG00000157227.12 protein_coding MMP14 1 OTTHUMG00000028704.4 +21609 chr14 ENSEMBL gene 22852616 22852728 113.0 - 0 ENSG00000212335.1 misc_RNA RF00019 3 +21610 chr14 ENSEMBL gene 22867818 22867917 100.0 + 0 ENSG00000199716.1 misc_RNA RF00019 3 +21611 chr14 HAVANA gene 22871613 22881580 7112.0 + 0 ENSG00000197324.8 protein_coding LRP10 2 OTTHUMG00000028705.3 +21612 chr14 HAVANA gene 22883165 22887686 2305.0 + 0 ENSG00000139890.9 protein_coding REM2 1 OTTHUMG00000170277.1 +21613 chr14 HAVANA gene 22893206 22919184 14022.0 - 0 ENSG00000100461.17 protein_coding RBM23 1 OTTHUMG00000171467.9 +21614 chr14 HAVANA gene 22918947 22926900 3194.0 + 0 ENSG00000237054.9 antisense PRMT5-AS1 1 OTTHUMG00000149898.8 +21615 chr14 HAVANA gene 22920511 22929585 3467.0 - 0 ENSG00000100462.15 protein_coding PRMT5 1 OTTHUMG00000028709.10 +21616 chr14 HAVANA gene 22929609 22955562 989.0 + 0 ENSG00000257285.5 antisense AL132780.1 2 OTTHUMG00000170278.1 +21617 chr14 ENSEMBL gene 22956950 22957029 80.0 - 0 ENSG00000284118.1 miRNA MIR4707 3 +21618 chr14 HAVANA gene 22946228 22957161 2539.0 - 0 ENSG00000092036.18 protein_coding HAUS4 2 OTTHUMG00000028710.8 ncRNA_host,overlapping_locus +21619 chr14 HAVANA gene 22946270 22982258 835.0 - 0 ENSG00000259132.1 protein_coding AL132780.3 2 OTTHUMG00000171458.2 ncRNA_host,overlapping_locus +21620 chr14 HAVANA gene 22971174 22982642 5979.0 - 0 ENSG00000129474.15 protein_coding AJUBA 1 OTTHUMG00000028711.5 overlapping_locus +21621 chr14 HAVANA gene 22982698 22999078 1462.0 + 0 ENSG00000258457.5 antisense AL132780.2 2 OTTHUMG00000171451.1 +21622 chr14 HAVANA gene 23005499 23007123 1625.0 - 0 ENSG00000280129.1 TEC AL132780.5 2 OTTHUMG00000171425.1 overlapping_locus +21623 chr14 HAVANA gene 22985908 23010166 4243.0 - 0 ENSG00000100802.14 protein_coding C14orf93 1 OTTHUMG00000028712.12 overlapping_locus +21624 chr14 HAVANA gene 23023083 23024217 1135.0 - 0 ENSG00000279656.1 TEC AL132780.4 2 OTTHUMG00000172912.1 overlapping_locus +21625 chr14 HAVANA gene 23016543 23035230 1765.0 - 0 ENSG00000100804.18 protein_coding PSMB5 1 OTTHUMG00000028713.5 overlapping_locus +21626 chr14 HAVANA gene 23042167 23044276 2110.0 + 0 ENSG00000222028.3 protein_coding PSMB11 2 OTTHUMG00000170279.1 retrogene +21627 chr14 HAVANA gene 23047062 23057538 3748.0 - 0 ENSG00000139880.19 protein_coding CDH24 2 OTTHUMG00000028715.7 +21628 chr14 HAVANA gene 23058564 23095614 9110.0 - 0 ENSG00000100813.14 protein_coding ACIN1 2 OTTHUMG00000028716.8 +21629 chr14 HAVANA gene 23094765 23100462 3676.0 + 0 ENSG00000179933.5 protein_coding C14orf119 2 OTTHUMG00000028717.4 +21630 chr14 HAVANA gene 23099065 23104992 2656.0 - 0 ENSG00000283654.2 protein_coding LMLN2 2 OTTHUMG00000191651.2 +21631 chr14 HAVANA gene 23117304 23119616 1554.0 - 0 ENSG00000092067.5 protein_coding CEBPE 2 OTTHUMG00000028719.2 +21632 chr14 ENSEMBL gene 23156309 23156414 106.0 - 0 ENSG00000202229.1 snRNA RNU6-1138P 3 +21633 chr14 HAVANA gene 23125295 23183674 5991.0 - 0 ENSG00000092068.19 protein_coding SLC7A8 1 OTTHUMG00000028720.5 ncRNA_host +21634 chr14 HAVANA gene 23229961 23230116 156.0 - 0 ENSG00000240131.1 processed_pseudogene AL049829.1 1 OTTHUMG00000157670.1 pseudo_consens +21635 chr14 ENSEMBL gene 23259460 23259566 107.0 - 0 ENSG00000252347.1 snRNA RNU6-1046P 3 +21636 chr14 HAVANA gene 23185316 23273477 2059.0 + 0 ENSG00000215277.8 protein_coding RNF212B 1 OTTHUMG00000149918.3 +21637 chr14 HAVANA gene 23293852 23295798 1947.0 + 0 ENSG00000270433.1 transcribed_unprocessed_pseudogene H3F3AP2 1 OTTHUMG00000184412.1 pseudo_consens +21638 chr14 HAVANA gene 23272422 23299447 5534.0 - 0 ENSG00000215271.7 protein_coding HOMEZ 2 OTTHUMG00000172122.7 overlapping_locus +21639 chr14 HAVANA gene 23295643 23302848 5548.0 - 0 ENSG00000235194.8 protein_coding PPP1R3E 2 OTTHUMG00000172116.3 overlapping_locus +21640 chr14 HAVANA gene 23298790 23311759 4189.0 + 0 ENSG00000129473.9 protein_coding BCL2L2 2 OTTHUMG00000028738.5 overlapping_locus +21641 chr14 HAVANA gene 23306835 23325369 1548.0 + 0 ENSG00000258643.5 protein_coding BCL2L2-PABPN1 1 OTTHUMG00000171498.2 overlapping_locus +21642 chr14 HAVANA gene 23321289 23326185 3876.0 + 0 ENSG00000100836.10 protein_coding PABPN1 2 OTTHUMG00000028739.4 overlapping_locus +21643 chr14 HAVANA gene 23346306 23352912 4278.0 - 0 ENSG00000092096.16 protein_coding SLC22A17 2 OTTHUMG00000028740.7 +21644 chr14 HAVANA gene 23356406 23357003 285.0 + 0 ENSG00000259018.1 antisense AL049829.2 2 OTTHUMG00000171499.1 +21645 chr14 HAVANA gene 23356402 23365752 3237.0 - 0 ENSG00000100842.12 protein_coding EFS 2 OTTHUMG00000028741.2 +21646 chr14 HAVANA gene 23372809 23376403 1367.0 + 0 ENSG00000166090.8 protein_coding IL25 2 OTTHUMG00000028749.2 +21647 chr14 HAVANA gene 23376773 23379772 2910.0 + 0 ENSG00000166091.20 protein_coding CMTM5 2 OTTHUMG00000028751.8 +21648 chr14 ENSEMBL gene 23388596 23388666 71.0 - 0 ENSG00000199157.2 miRNA MIR208A 3 +21649 chr14 HAVANA gene 23381990 23408277 6493.0 - 0 ENSG00000197616.11 protein_coding MYH6 2 OTTHUMG00000028753.4 ncRNA_host +21650 chr14 HAVANA gene 23415339 23415686 207.0 + 0 ENSG00000258444.1 antisense AL132855.1 2 OTTHUMG00000171500.1 +21651 chr14 ENSEMBL gene 23417987 23418063 77.0 - 0 ENSG00000215991.1 miRNA MIR208B 3 +21652 chr14 HAVANA gene 23412738 23435718 6087.0 - 0 ENSG00000092054.12 protein_coding MYH7 2 OTTHUMG00000028755.4 ncRNA_host +21653 chr14 HAVANA gene 23469688 23509862 4654.0 + 0 ENSG00000129460.15 protein_coding NGDN 1 OTTHUMG00000171501.5 +21654 chr14 HAVANA gene 23530682 23532367 1686.0 + 0 ENSG00000273618.1 antisense AL135999.2 2 OTTHUMG00000187059.1 overlapping_locus +21655 chr14 HAVANA gene 23520855 23556192 10128.0 - 0 ENSG00000136367.13 protein_coding ZFHX2 1 OTTHUMG00000156894.6 +21656 chr14 HAVANA gene 23555988 23560271 2894.0 + 0 ENSG00000259431.5 protein_coding THTPA 2 OTTHUMG00000172558.3 overlapping_locus +21657 chr14 HAVANA gene 23511760 23560778 5097.0 + 0 ENSG00000157306.14 processed_transcript ZFHX2-AS1 2 OTTHUMG00000187908.1 overlapping_locus +21658 chr14 HAVANA gene 23559565 23568070 6897.0 - 0 ENSG00000213983.11 protein_coding AP1G2 2 OTTHUMG00000028760.13 overlapping_locus +21659 chr14 HAVANA gene 23561097 23568073 3243.0 + 0 ENSG00000258727.1 antisense AL135999.1 2 OTTHUMG00000171522.1 +21660 chr14 HAVANA gene 23568035 23578800 5307.0 - 0 ENSG00000092051.16 protein_coding JPH4 1 OTTHUMG00000028769.3 overlapping_locus +21661 chr14 HAVANA gene 23619201 23620012 812.0 + 0 ENSG00000274002.1 lincRNA AL135999.3 2 OTTHUMG00000187061.1 +21662 chr14 HAVANA gene 23630115 23645639 7556.0 + 0 ENSG00000100867.14 protein_coding DHRS2 2 OTTHUMG00000028771.5 +21663 chr14 HAVANA gene 23729038 23729741 704.0 - 0 ENSG00000258464.1 processed_transcript AL160237.1 2 OTTHUMG00000170673.1 +21664 chr14 HAVANA gene 23749236 23751150 1915.0 + 0 ENSG00000259043.1 processed_pseudogene BRD7P1 1 OTTHUMG00000170674.1 pseudo_consens +21665 chr14 HAVANA gene 23767662 23768998 1013.0 + 0 ENSG00000270618.1 unprocessed_pseudogene AL160237.3 1 OTTHUMG00000184439.1 pseudo_consens +21666 chr14 ENSEMBL gene 23791930 23792236 307.0 + 0 ENSG00000222931.1 misc_RNA RN7SKP205 3 +21667 chr14 HAVANA gene 23817281 23827396 472.0 - 0 ENSG00000258887.3 unprocessed_pseudogene AL160237.2 2 OTTHUMG00000171339.3 +21668 chr14 HAVANA gene 23875938 23882428 809.0 - 0 ENSG00000285727.1 lincRNA AL136419.2 2 OTTHUMG00000192706.1 +21669 chr14 HAVANA gene 23922247 23934568 937.0 - 0 ENSG00000259334.1 lincRNA LINC00596 2 OTTHUMG00000171723.3 +21670 chr14 HAVANA gene 23953586 23969279 2305.0 + 0 ENSG00000157326.18 protein_coding DHRS4 2 OTTHUMG00000028777.5 +21671 chr14 HAVANA gene 23938731 23988839 3593.0 - 0 ENSG00000215256.3 antisense DHRS4-AS1 1 OTTHUMG00000171901.1 +21672 chr14 HAVANA gene 23969874 24006408 2516.0 + 0 ENSG00000187630.16 protein_coding DHRS4L2 2 OTTHUMG00000028778.7 overlapping_locus +21673 chr14 HAVANA gene 24036453 24051028 1272.0 + 0 ENSG00000225766.10 transcribed_unprocessed_pseudogene DHRS4L1 2 OTTHUMG00000172193.3 overlapping_locus +21674 chr14 HAVANA gene 23969931 24051377 1382.0 + 0 ENSG00000285467.1 processed_transcript AL136419.1 2 OTTHUMG00000192522.1 overlapping_locus +21675 chr14 HAVANA gene 24052000 24069728 6665.0 + 0 ENSG00000186648.14 protein_coding CARMIL3 2 OTTHUMG00000172023.1 +21676 chr14 HAVANA gene 24070837 24078100 5996.0 + 0 ENSG00000100884.9 protein_coding CPNE6 2 OTTHUMG00000028781.7 +21677 chr14 HAVANA gene 24094053 24110598 4189.0 + 0 ENSG00000100889.11 protein_coding PCK2 1 OTTHUMG00000028791.9 +21678 chr14 HAVANA gene 24080107 24115014 3113.0 - 0 ENSG00000129535.12 protein_coding NRL 2 OTTHUMG00000028789.5 +21679 chr14 HAVANA gene 24114195 24125242 6350.0 + 0 ENSG00000100897.17 protein_coding DCAF11 1 OTTHUMG00000028793.9 overlapping_locus +21680 chr14 HAVANA gene 24120956 24131829 850.0 + 0 ENSG00000259371.2 protein_coding AL136295.3 1 OTTHUMG00000172021.3 overlapping_locus +21681 chr14 HAVANA gene 24131275 24132849 1355.0 + 0 ENSG00000139914.6 protein_coding FITM1 2 OTTHUMG00000133476.2 overlapping_locus +21682 chr14 HAVANA gene 24136158 24138967 1781.0 + 0 ENSG00000092010.14 protein_coding PSME1 2 OTTHUMG00000028795.3 +21683 chr14 HAVANA gene 24139445 24140444 747.0 + 0 ENSG00000259321.1 lincRNA AL136295.2 2 OTTHUMG00000171965.1 +21684 chr14 HAVANA gene 24138959 24141588 1588.0 - 0 ENSG00000100908.13 protein_coding EMC9 1 OTTHUMG00000028796.5 +21685 chr14 ENSEMBL gene 24143489 24143565 77.0 - 0 ENSG00000283856.1 miRNA MIR7703 3 +21686 chr14 HAVANA gene 24143362 24147570 3582.0 - 0 ENSG00000100911.15 protein_coding PSME2 2 OTTHUMG00000028797.6 ncRNA_host +21687 chr14 ENSEMBL gene 24158603 24158722 120.0 + 0 ENSG00000199804.1 rRNA_pseudogene RNA5SP383 3 +21688 chr14 HAVANA gene 24146683 24160661 4982.0 + 0 ENSG00000092098.16 protein_coding RNF31 1 OTTHUMG00000028798.7 overlapping_locus +21689 chr14 HAVANA gene 24161053 24166565 3794.0 + 0 ENSG00000213928.8 protein_coding IRF9 1 OTTHUMG00000028799.4 overlapping_locus +21690 chr14 HAVANA gene 24151218 24167402 4798.0 + 0 ENSG00000259529.1 protein_coding AL136295.5 2 OTTHUMG00000171951.1 overlapping_locus +21691 chr14 HAVANA gene 24171853 24180257 3844.0 + 0 ENSG00000100918.12 protein_coding REC8 2 OTTHUMG00000171916.7 +21692 chr14 HAVANA gene 24180219 24188964 5007.0 - 0 ENSG00000196497.16 protein_coding IPO4 2 OTTHUMG00000028801.6 overlapping_locus +21693 chr14 HAVANA gene 24180395 24190416 4351.0 - 0 ENSG00000259522.3 protein_coding AL136295.4 2 OTTHUMG00000170680.2 overlapping_locus +21694 chr14 HAVANA gene 24189143 24195687 3536.0 - 0 ENSG00000100926.14 protein_coding TM9SF1 1 OTTHUMG00000029322.7 overlapping_locus +21695 chr14 HAVANA gene 24198433 24199090 658.0 + 0 ENSG00000276698.1 lincRNA AL136295.6 2 OTTHUMG00000187063.1 +21696 chr14 HAVANA gene 24201612 24202811 1200.0 - 0 ENSG00000278784.1 sense_intronic AL136295.7 2 OTTHUMG00000187065.1 overlapping_locus +21697 chr14 HAVANA gene 24205697 24208362 1924.0 + 0 ENSG00000139908.14 protein_coding TSSK4 1 OTTHUMG00000029323.5 +21698 chr14 HAVANA gene 24189157 24213473 2740.0 - 0 ENSG00000254692.1 protein_coding AL136295.1 1 OTTHUMG00000167035.1 overlapping_locus +21699 chr14 HAVANA gene 24209583 24213869 2413.0 - 0 ENSG00000254505.9 protein_coding CHMP4A 1 OTTHUMG00000167036.10 overlapping_locus +21700 chr14 HAVANA gene 24209646 24215987 3045.0 - 0 ENSG00000260669.2 processed_transcript AL096870.2 2 OTTHUMG00000029324.4 overlapping_locus +21701 chr14 HAVANA gene 24213937 24216070 1072.0 - 0 ENSG00000213920.8 protein_coding MDP1 2 OTTHUMG00000133477.4 overlapping_locus +21702 chr14 HAVANA gene 24213955 24232352 1051.0 - 0 ENSG00000255526.6 protein_coding NEDD8-MDP1 2 OTTHUMG00000167107.3 overlapping_locus +21703 chr14 HAVANA gene 24216852 24232454 3879.0 - 0 ENSG00000129559.12 protein_coding NEDD8 2 OTTHUMG00000029325.5 overlapping_locus +21704 chr14 HAVANA gene 24232422 24239242 3640.0 + 0 ENSG00000100938.17 protein_coding GMPR2 1 OTTHUMG00000171912.8 +21705 chr14 HAVANA gene 24239643 24242674 2712.0 - 0 ENSG00000092330.16 protein_coding TINF2 1 OTTHUMG00000171849.6 +21706 chr14 HAVANA gene 24249114 24264432 3735.0 - 0 ENSG00000092295.11 protein_coding TGM1 2 OTTHUMG00000029329.8 +21707 chr14 HAVANA gene 24265538 24271739 3545.0 - 0 ENSG00000100949.14 protein_coding RABGGTA 1 OTTHUMG00000171838.7 +21708 chr14 HAVANA gene 24290598 24299833 5002.0 - 0 ENSG00000157379.13 protein_coding DHRS1 2 OTTHUMG00000029333.4 +21709 chr14 HAVANA gene 24299862 24309124 6033.0 + 0 ENSG00000196943.13 protein_coding NOP9 2 OTTHUMG00000029342.5 overlapping_locus +21710 chr14 HAVANA gene 24305096 24311430 3198.0 - 0 ENSG00000136305.11 protein_coding CIDEB 1 OTTHUMG00000171555.3 +21711 chr14 HAVANA gene 24305734 24312053 3233.0 + 0 ENSG00000213906.9 protein_coding LTB4R2 2 OTTHUMG00000186500.3 overlapping_locus +21712 chr14 HAVANA gene 24311450 24318036 4465.0 + 0 ENSG00000213903.8 protein_coding LTB4R 2 OTTHUMG00000029346.6 overlapping_locus +21713 chr14 HAVANA gene 24318349 24335093 8067.0 - 0 ENSG00000129467.13 protein_coding ADCY4 2 OTTHUMG00000029347.9 overlapping_locus +21714 chr14 HAVANA gene 24332310 24337382 930.0 - 0 ENSG00000258973.1 protein_coding AL096870.1 2 OTTHUMG00000171754.1 overlapping_locus +21715 chr14 HAVANA gene 24336021 24340045 3256.0 - 0 ENSG00000129465.15 protein_coding RIPK3 2 OTTHUMG00000029349.4 overlapping_locus +21716 chr14 ENSEMBL gene 24352057 24352157 101.0 - 0 ENSG00000283290.1 snRNA RF00026 3 +21717 chr14 HAVANA gene 24365673 24379604 8437.0 + 0 ENSG00000100968.13 protein_coding NFATC4 2 OTTHUMG00000029351.12 +21718 chr14 HAVANA gene 24398786 24419288 7955.0 + 0 ENSG00000205978.5 protein_coding NYNRIN 2 OTTHUMG00000171314.2 +21719 chr14 HAVANA gene 24426532 24430954 2562.0 - 0 ENSG00000139899.10 protein_coding CBLN3 1 OTTHUMG00000171315.1 +21720 chr14 HAVANA gene 24429286 24441834 8015.0 + 0 ENSG00000100441.9 protein_coding KHNYN 1 OTTHUMG00000171312.4 +21721 chr14 HAVANA gene 24439766 24442905 3099.0 - 0 ENSG00000100445.17 protein_coding SDR39U1 1 OTTHUMG00000171316.7 +21722 chr14 HAVANA gene 24505353 24508265 937.0 - 0 ENSG00000092009.10 protein_coding CMA1 1 OTTHUMG00000140181.2 +21723 chr14 HAVANA gene 24501594 24508688 698.0 + 0 ENSG00000258744.1 antisense AL132800.1 1 OTTHUMG00000171289.1 +21724 chr14 HAVANA gene 24573522 24576260 1374.0 - 0 ENSG00000100448.3 protein_coding CTSG 2 OTTHUMG00000140182.2 +21725 chr14 HAVANA gene 24606480 24609699 951.0 - 0 ENSG00000100450.12 protein_coding GZMH 1 OTTHUMG00000140185.3 +21726 chr14 HAVANA gene 24630954 24634267 1411.0 - 0 ENSG00000100453.12 protein_coding GZMB 1 OTTHUMG00000029369.5 +21727 chr14 HAVANA gene 24595723 24657774 947.0 + 0 ENSG00000258657.5 antisense AL136018.1 2 OTTHUMG00000171335.1 +21728 chr14 HAVANA gene 24809656 25050297 8067.0 - 0 ENSG00000168952.15 protein_coding STXBP6 2 OTTHUMG00000140186.3 +21729 chr14 HAVANA gene 25124487 25126998 285.0 - 0 ENSG00000258098.1 lincRNA LINC02286 2 OTTHUMG00000170437.1 +21730 chr14 HAVANA gene 25267064 25267336 273.0 - 0 ENSG00000257179.1 processed_pseudogene HMGN2P6 1 OTTHUMG00000170312.1 pseudo_consens +21731 chr14 HAVANA gene 25357764 25358689 926.0 + 0 ENSG00000258275.1 unprocessed_pseudogene OR7K1P 2 OTTHUMG00000170313.1 +21732 chr14 HAVANA gene 25431193 25432234 1042.0 - 0 ENSG00000257976.1 processed_pseudogene AL079352.1 1 OTTHUMG00000170317.1 pseudo_consens +21733 chr14 ENSEMBL gene 25806648 25806712 65.0 - 0 ENSG00000212270.1 snoRNA RF00440 3 +21734 chr14 HAVANA gene 25820366 25822741 2376.0 + 0 ENSG00000279521.1 TEC AL359396.1 2 OTTHUMG00000170314.2 +21735 chr14 HAVANA gene 25916015 25998805 4532.0 + 0 ENSG00000285633.1 lincRNA AL132633.1 2 OTTHUMG00000193332.1 +21736 chr14 HAVANA gene 25647304 26143305 2989.0 - 0 ENSG00000257986.2 lincRNA LINC02306 2 OTTHUMG00000170315.3 ncRNA_host +21737 chr14 HAVANA gene 26208036 26208424 389.0 + 0 ENSG00000257503.1 processed_pseudogene CYB5AP5 1 OTTHUMG00000170316.1 pseudo_consens +21738 chr14 HAVANA gene 26592747 26594517 1771.0 - 0 ENSG00000262119.1 sense_intronic AL079343.1 2 OTTHUMG00000170320.1 overlapping_locus +21739 chr14 HAVANA gene 26443093 26597754 10046.0 - 0 ENSG00000139910.19 protein_coding NOVA1 1 OTTHUMG00000029385.8 overlapping_locus +21740 chr14 HAVANA gene 26598412 26806467 1483.0 + 0 ENSG00000257842.5 antisense LINC02588 2 OTTHUMG00000170389.2 +21741 chr14 HAVANA gene 26775495 26822107 497.0 - 0 ENSG00000257845.1 lincRNA LINC02294 2 OTTHUMG00000170331.2 +21742 chr14 HAVANA gene 26809417 26836458 853.0 + 0 ENSG00000257185.1 lincRNA LINC02293 2 OTTHUMG00000170416.1 +21743 chr14 ENSEMBL gene 26908642 26908725 84.0 + 0 ENSG00000265165.1 miRNA MIR4307 3 +21744 chr14 HAVANA gene 26873133 26914743 932.0 + 0 ENSG00000257612.1 lincRNA MIR4307HG 2 OTTHUMG00000170436.1 ncRNA_host,overlapping_locus +21745 chr14 HAVANA gene 26836728 27160420 919.0 + 0 ENSG00000258081.3 lincRNA AL110292.1 2 OTTHUMG00000170435.2 ncRNA_host,overlapping_locus +21746 chr14 ENSEMBL gene 27633205 27633278 74.0 - 0 ENSG00000264657.1 miRNA MIR3171 3 +21747 chr14 HAVANA gene 27612588 27639636 3654.0 + 0 ENSG00000258548.5 lincRNA LINC00645 2 OTTHUMG00000170580.2 +21748 chr14 HAVANA gene 27258717 27845286 1666.0 - 0 ENSG00000258932.5 transcribed_processed_pseudogene AL390334.1 1 OTTHUMG00000170579.1 pseudo_consens +21749 chr14 HAVANA gene 28264390 28265974 1585.0 + 0 ENSG00000197358.9 transcribed_processed_pseudogene BNIP3P1 1 OTTHUMG00000170378.2 pseudo_consens +21750 chr14 HAVANA gene 28318141 28418612 508.0 + 0 ENSG00000257869.1 lincRNA AL139023.1 2 OTTHUMG00000170385.1 +21751 chr14 HAVANA gene 28489910 28490362 453.0 + 0 ENSG00000240179.1 processed_pseudogene RPL26P3 1 OTTHUMG00000157685.1 pseudo_consens +21752 chr14 HAVANA gene 28593779 28593919 141.0 + 0 ENSG00000257662.1 processed_pseudogene EIF4A1P12 1 OTTHUMG00000170384.1 pseudo_consens +21753 chr14 HAVANA gene 28592223 28613623 665.0 - 0 ENSG00000258175.1 lincRNA LINC02300 2 OTTHUMG00000170383.1 +21754 chr14 HAVANA gene 28673241 28673727 487.0 - 0 ENSG00000258282.2 processed_pseudogene BTF3P2 1 OTTHUMG00000170386.2 pseudo_consens +21755 chr14 HAVANA gene 28729083 28765277 874.0 - 0 ENSG00000257126.5 antisense FOXG1-AS1 2 OTTHUMG00000170343.1 +21756 chr14 HAVANA gene 28760330 28770277 5358.0 + 0 ENSG00000176165.10 protein_coding FOXG1 2 OTTHUMG00000140187.6 +21757 chr14 HAVANA gene 28783491 28785787 1655.0 - 0 ENSG00000257056.2 lincRNA LINC02282 2 OTTHUMG00000170346.1 +21758 chr14 HAVANA gene 28772704 28813453 2772.0 + 0 ENSG00000186960.10 lincRNA LINC01551 2 OTTHUMG00000029410.6 +21759 chr14 HAVANA gene 28818741 28819258 518.0 + 0 ENSG00000274762.1 antisense AL049777.1 2 OTTHUMG00000186807.1 +21760 chr14 HAVANA gene 28800084 28830204 375.0 - 0 ENSG00000257748.1 lincRNA LINC02281 2 OTTHUMG00000170360.1 +21761 chr14 HAVANA gene 28857384 28858701 1318.0 - 0 ENSG00000258065.1 processed_pseudogene AL122126.1 1 OTTHUMG00000170369.1 pseudo_consens +21762 chr14 ENSEMBL gene 28901236 28901347 112.0 - 0 ENSG00000207164.1 misc_RNA RF00019 3 +21763 chr14 HAVANA gene 28830244 28968400 1986.0 + 0 ENSG00000258038.5 lincRNA LINC02327 2 OTTHUMG00000170368.1 overlapping_locus +21764 chr14 ENSEMBL gene 28982303 28982410 108.0 - 0 ENSG00000252065.1 snRNA RNU6-864P 3 +21765 chr14 HAVANA gene 28936889 29028763 741.0 + 0 ENSG00000258028.1 lincRNA AL138974.1 2 OTTHUMG00000170370.1 overlapping_locus +21766 chr14 HAVANA gene 28875404 29064993 2051.0 - 0 ENSG00000257523.2 lincRNA LINC02326 2 OTTHUMG00000170371.2 ncRNA_host +21767 chr14 HAVANA gene 29264381 29381295 1775.0 - 0 ENSG00000257522.5 processed_transcript AL133166.1 2 OTTHUMG00000170373.2 +21768 chr14 HAVANA gene 29390074 29436412 919.0 + 0 ENSG00000258107.2 lincRNA AL158058.1 2 OTTHUMG00000170374.2 +21769 chr14 ENSEMBL gene 29476784 29476912 129.0 + 0 ENSG00000212518.1 snRNA RNU11-5P 3 +21770 chr14 HAVANA gene 29652809 29657916 551.0 + 0 ENSG00000257120.1 antisense AL356756.1 2 OTTHUMG00000170489.1 +21771 chr14 ENSEMBL gene 29811916 29812018 103.0 + 0 ENSG00000252686.1 snRNA RNU6-1234P 3 +21772 chr14 HAVANA gene 29940745 29980212 821.0 + 0 ENSG00000257904.1 antisense AL133372.3 2 OTTHUMG00000170490.1 +21773 chr14 HAVANA gene 30055210 30055954 745.0 + 0 ENSG00000240201.1 processed_pseudogene AL133372.1 1 OTTHUMG00000157690.2 pseudo_consens +21774 chr14 HAVANA gene 29576479 30191898 5187.0 - 0 ENSG00000184304.14 protein_coding PRKD1 2 OTTHUMG00000140203.5 overlapping_locus +21775 chr14 HAVANA gene 29952397 30297043 1774.0 - 0 ENSG00000248975.2 lincRNA AL133372.2 2 OTTHUMG00000170491.1 overlapping_locus +21776 chr14 HAVANA gene 30370108 30373115 3008.0 + 0 ENSG00000279032.1 TEC AL079305.1 2 OTTHUMG00000172920.1 +21777 chr14 ENSEMBL gene 30519161 30519318 158.0 + 0 ENSG00000278587.1 misc_RNA RF02271 3 +21778 chr14 HAVANA gene 30541776 30542188 413.0 - 0 ENSG00000258350.1 processed_pseudogene SYF2P1 1 OTTHUMG00000170511.1 pseudo_consens,overlapping_locus +21779 chr14 HAVANA gene 30437992 30573629 1669.0 - 0 ENSG00000257636.6 antisense G2E3-AS1 2 OTTHUMG00000170510.2 overlapping_locus +21780 chr14 HAVANA gene 30559123 30620063 9237.0 + 0 ENSG00000092140.15 protein_coding G2E3 2 OTTHUMG00000140204.6 +21781 chr14 HAVANA gene 30683045 30683598 554.0 - 0 ENSG00000258648.1 processed_pseudogene UBE2CP1 1 OTTHUMG00000170581.1 pseudo_consens +21782 chr14 HAVANA gene 30622112 30735812 6571.0 + 0 ENSG00000092108.20 protein_coding SCFD1 1 OTTHUMG00000029420.5 +21783 chr14 HAVANA gene 30791098 30791489 392.0 + 0 ENSG00000243855.1 processed_pseudogene RPL12P5 1 OTTHUMG00000157709.2 pseudo_consens +21784 chr14 HAVANA gene 30819714 30819914 201.0 + 0 ENSG00000240513.1 processed_pseudogene AL049830.2 1 OTTHUMG00000158035.1 pseudo_consens +21785 chr14 HAVANA gene 30821419 30821843 425.0 + 0 ENSG00000213867.4 processed_pseudogene AL049830.1 1 OTTHUMG00000158034.1 pseudo_consens +21786 chr14 HAVANA gene 30734926 30822702 430.0 - 0 ENSG00000258558.1 antisense AL121852.1 2 OTTHUMG00000170582.1 +21787 chr14 HAVANA gene 30876179 30889808 2302.0 - 0 ENSG00000258525.1 antisense AL049830.3 2 OTTHUMG00000170583.1 +21788 chr14 HAVANA gene 30874514 30895065 3621.0 + 0 ENSG00000100473.16 protein_coding COCH 1 OTTHUMG00000029432.8 +21789 chr14 HAVANA gene 30964347 30964622 276.0 + 0 ENSG00000258886.2 processed_pseudogene HIGD1AP17 2 OTTHUMG00000170584.2 +21790 chr14 ENSEMBL gene 31014646 31014742 97.0 - 0 ENSG00000207952.1 miRNA MIR624 3 +21791 chr14 HAVANA gene 31018446 31018796 351.0 + 0 ENSG00000258968.2 processed_pseudogene AL049830.4 1 OTTHUMG00000170585.2 pseudo_consens +21792 chr14 HAVANA gene 30893799 31026401 4965.0 - 0 ENSG00000196792.11 protein_coding STRN3 1 OTTHUMG00000140201.4 ncRNA_host +21793 chr14 HAVANA gene 31025106 31096450 7223.0 + 0 ENSG00000100478.14 protein_coding AP4S1 2 OTTHUMG00000140202.5 +21794 chr14 HAVANA gene 31111569 31112239 472.0 - 0 ENSG00000258640.3 processed_pseudogene RPL21P5 1 OTTHUMG00000170671.3 pseudo_consens,overlapping_locus +21795 chr14 ENSEMBL gene 31142939 31143048 110.0 + 0 ENSG00000207440.1 snRNA RNU6-541P 3 +21796 chr14 HAVANA gene 31100112 31207804 12557.0 - 0 ENSG00000092148.12 protein_coding HECTD1 1 OTTHUMG00000170670.4 overlapping_locus +21797 chr14 ENSEMBL gene 31244761 31244861 101.0 + 0 ENSG00000202402.1 misc_RNA RF00019 3 +21798 chr14 ENSEMBL gene 31258608 31258709 102.0 - 0 ENSG00000199291.1 misc_RNA RF00019 3 +21799 chr14 HAVANA gene 31248628 31302739 975.0 + 0 ENSG00000257831.1 antisense AL136418.1 2 OTTHUMG00000170516.1 +21800 chr14 HAVANA gene 31320224 31320634 411.0 - 0 ENSG00000283016.1 processed_pseudogene AL139353.3 1 OTTHUMG00000191501.1 pseudo_consens +21801 chr14 HAVANA gene 31291791 31420582 10243.0 - 0 ENSG00000129493.14 protein_coding HEATR5A 1 OTTHUMG00000169043.4 overlapping_locus +21802 chr14 HAVANA gene 31420286 31452883 1791.0 + 0 ENSG00000250365.6 antisense AL139353.2 2 OTTHUMG00000170517.1 +21803 chr14 HAVANA gene 31334312 31457441 4422.0 - 0 ENSG00000203546.7 protein_coding AL139353.1 2 OTTHUMG00000169042.3 overlapping_locus +21804 chr14 HAVANA gene 31446036 31457510 2971.0 - 0 ENSG00000129480.12 protein_coding DTD2 2 OTTHUMG00000140205.2 overlapping_locus +21805 chr14 HAVANA gene 31462795 31463371 577.0 - 0 ENSG00000239323.1 processed_pseudogene AL163973.1 1 OTTHUMG00000157725.1 pseudo_consens +21806 chr14 HAVANA gene 31482875 31488142 1343.0 - 0 ENSG00000214943.4 protein_coding GPR33 2 OTTHUMG00000154921.6 +21807 chr14 HAVANA gene 31553358 31558498 430.0 - 0 ENSG00000258196.1 antisense AL163973.3 2 OTTHUMG00000170532.1 +21808 chr14 HAVANA gene 31558507 31561334 288.0 - 0 ENSG00000257155.1 antisense AL163973.2 2 OTTHUMG00000170533.1 +21809 chr14 ENSEMBL gene 31662039 31662143 105.0 - 0 ENSG00000223087.2 snRNA RNU6-602P 3 +21810 chr14 ENSEMBL gene 31686692 31686798 107.0 - 0 ENSG00000207412.1 snRNA RNU6-455P 3 +21811 chr14 HAVANA gene 31489956 31861224 7590.0 + 0 ENSG00000151413.16 protein_coding NUBPL 1 OTTHUMG00000170521.3 +21812 chr14 HAVANA gene 31925801 31930146 1236.0 - 0 ENSG00000257472.1 lincRNA AL355112.1 2 OTTHUMG00000170534.1 +21813 chr14 HAVANA gene 31944853 31950382 550.0 + 0 ENSG00000258474.1 lincRNA LINC02313 1 OTTHUMG00000170586.1 +21814 chr14 HAVANA gene 31964550 31965095 546.0 + 0 ENSG00000275002.1 transcribed_unprocessed_pseudogene AL352984.2 2 OTTHUMG00000187834.1 +21815 chr14 HAVANA gene 32006902 32018685 276.0 + 0 ENSG00000258386.1 lincRNA AL352984.1 1 OTTHUMG00000170587.1 +21816 chr14 HAVANA gene 32074946 32076793 1848.0 - 0 ENSG00000258655.2 antisense ARHGAP5-AS1 2 OTTHUMG00000170588.2 +21817 chr14 HAVANA gene 32149176 32158008 3938.0 - 0 ENSG00000285608.1 antisense AL161665.1 2 OTTHUMG00000193300.1 +21818 chr14 HAVANA gene 32076114 32159728 10888.0 + 0 ENSG00000100852.12 protein_coding ARHGAP5 2 OTTHUMG00000170589.4 +21819 chr14 ENSEMBL gene 32202045 32202151 107.0 + 0 ENSG00000201654.1 snRNA RNU6-7 3 +21820 chr14 ENSEMBL gene 32203163 32203269 107.0 - 0 ENSG00000202337.1 snRNA RNU6-8 3 +21821 chr14 HAVANA gene 32241524 32243093 1570.0 - 0 ENSG00000258619.2 processed_pseudogene AL136298.2 2 OTTHUMG00000170590.2 +21822 chr14 HAVANA gene 32271857 32272301 445.0 - 0 ENSG00000259086.3 processed_pseudogene AL136298.3 2 OTTHUMG00000170591.2 +21823 chr14 HAVANA gene 32373337 32417974 928.0 - 0 ENSG00000258580.1 antisense AL136298.1 1 OTTHUMG00000170592.1 +21824 chr14 ENSEMBL gene 32442341 32442639 299.0 + 0 ENSG00000278746.1 misc_RNA RN7SL660P 3 +21825 chr14 HAVANA gene 32484098 32484800 703.0 - 0 ENSG00000259045.1 unprocessed_pseudogene MTCO1P2 2 OTTHUMG00000170593.1 +21826 chr14 HAVANA gene 32329273 32837681 19748.0 + 0 ENSG00000151320.10 protein_coding AKAP6 1 OTTHUMG00000140207.5 ncRNA_host +21827 chr14 HAVANA gene 32879246 32882830 3585.0 + 0 ENSG00000280281.1 TEC AL049781.1 2 OTTHUMG00000172921.1 +21828 chr14 HAVANA gene 32934933 33804176 9241.0 + 0 ENSG00000151322.18 protein_coding NPAS3 1 OTTHUMG00000140215.4 +21829 chr14 HAVANA gene 34040097 34059300 308.0 + 0 ENSG00000258897.1 antisense EGLN3-AS1 2 OTTHUMG00000170577.1 +21830 chr14 HAVANA gene 34416687 34417602 916.0 - 0 ENSG00000223593.1 processed_pseudogene AL356806.1 1 OTTHUMG00000154922.1 pseudo_consens,overlapping_locus +21831 chr14 HAVANA gene 34432789 34462356 2777.0 - 0 ENSG00000165389.6 protein_coding SPTSSA 2 OTTHUMG00000140212.2 overlapping_locus +21832 chr14 HAVANA gene 33924231 34462774 7359.0 - 0 ENSG00000129521.13 protein_coding EGLN3 1 OTTHUMG00000029498.10 overlapping_locus +21833 chr14 HAVANA gene 34485979 34486447 469.0 + 0 ENSG00000237450.5 processed_pseudogene RPL23AP71 1 OTTHUMG00000157728.2 pseudo_consens +21834 chr14 HAVANA gene 34515929 34539711 2030.0 - 0 ENSG00000129518.8 protein_coding EAPP 2 OTTHUMG00000170621.3 +21835 chr14 HAVANA gene 34541044 34541714 671.0 + 0 ENSG00000279423.1 TEC AL445363.3 2 OTTHUMG00000171337.1 +21836 chr14 HAVANA gene 34541740 34546329 1324.0 - 0 ENSG00000259002.2 lincRNA AL445363.1 2 OTTHUMG00000171338.2 +21837 chr14 ENSEMBL gene 34546714 34546877 164.0 + 0 ENSG00000206596.1 snRNA RNU1-27P 3 +21838 chr14 ENSEMBL gene 34556226 34556389 164.0 - 0 ENSG00000206588.1 snRNA RNU1-28P 3 +21839 chr14 HAVANA gene 34556774 34561298 1137.0 + 0 ENSG00000259135.1 antisense AL445363.2 2 OTTHUMG00000170622.2 +21840 chr14 HAVANA gene 34568689 34569129 441.0 - 0 ENSG00000240463.1 processed_pseudogene RPS19P3 1 OTTHUMG00000157732.1 pseudo_consens,overlapping_locus +21841 chr14 HAVANA gene 34561094 34630183 4105.0 - 0 ENSG00000129515.18 protein_coding SNX6 1 OTTHUMG00000140213.5 overlapping_locus +21842 chr14 ENSEMBL gene 34659564 34659878 315.0 - 0 ENSG00000275978.1 misc_RNA RF00017 3 +21843 chr14 ENSEMBL gene 34675891 34675994 104.0 + 0 ENSG00000253003.1 snRNA RNU6-1261P 3 +21844 chr14 HAVANA gene 34694170 34694644 475.0 + 0 ENSG00000241582.1 processed_pseudogene RPL23AP8 1 OTTHUMG00000158037.1 pseudo_consens +21845 chr14 HAVANA gene 34706769 34714823 7179.0 - 0 ENSG00000165410.14 protein_coding CFL2 1 OTTHUMG00000029536.8 +21846 chr14 HAVANA gene 34740336 34740833 498.0 - 0 ENSG00000243824.1 processed_pseudogene RPL12P6 1 OTTHUMG00000158031.1 pseudo_consens +21847 chr14 ENSEMBL gene 34845300 34845360 61.0 - 0 ENSG00000251726.1 snRNA RNU7-41P 3 +21848 chr14 HAVANA gene 34752731 34875647 7698.0 - 0 ENSG00000198604.10 protein_coding BAZ1A 2 OTTHUMG00000140216.5 ncRNA_host +21849 chr14 HAVANA gene 34874343 34876459 2117.0 + 0 ENSG00000258738.1 antisense AL121603.2 2 OTTHUMG00000170792.1 +21850 chr14 HAVANA gene 34920865 34921006 142.0 + 0 ENSG00000258493.2 processed_pseudogene AL121603.1 1 OTTHUMG00000170794.2 pseudo_consens +21851 chr14 HAVANA gene 34939324 34940332 1009.0 + 0 ENSG00000226677.3 processed_pseudogene IGBP1P1 1 OTTHUMG00000170820.1 pseudo_consens +21852 chr14 HAVANA gene 34920858 34982532 1531.0 - 0 ENSG00000258704.6 transcribed_unitary_pseudogene SRP54-AS1 2 OTTHUMG00000170821.4 +21853 chr14 HAVANA gene 34981957 35029567 3903.0 + 0 ENSG00000100883.11 protein_coding SRP54 2 OTTHUMG00000140214.4 +21854 chr14 HAVANA gene 35086035 35088059 2025.0 + 0 ENSG00000279434.1 TEC AL049776.1 2 OTTHUMG00000170879.1 overlapping_locus +21855 chr14 HAVANA gene 35044907 35113130 8385.0 + 0 ENSG00000151327.12 protein_coding FAM177A1 2 OTTHUMG00000140217.7 overlapping_locus +21856 chr14 HAVANA gene 35085467 35122517 3863.0 - 0 ENSG00000092020.10 protein_coding PPP2R3C 2 OTTHUMG00000140224.6 +21857 chr14 HAVANA gene 35144021 35144480 460.0 - 0 ENSG00000241052.1 processed_pseudogene RPL23AP70 1 OTTHUMG00000157752.1 pseudo_consens +21858 chr14 HAVANA gene 35157904 35159099 1196.0 - 0 ENSG00000259090.1 processed_pseudogene SEPT7P1 1 OTTHUMG00000171026.1 pseudo_consens +21859 chr14 HAVANA gene 35219023 35219283 261.0 - 0 ENSG00000282625.1 processed_pseudogene MRPL57P8 2 OTTHUMG00000191401.1 +21860 chr14 HAVANA gene 35222174 35222746 573.0 + 0 ENSG00000282308.1 processed_pseudogene DPRXP3 1 OTTHUMG00000191402.1 pseudo_consens +21861 chr14 HAVANA gene 35235180 35235651 472.0 - 0 ENSG00000256243.2 processed_pseudogene RPL7AP3 1 OTTHUMG00000171027.1 pseudo_consens +21862 chr14 HAVANA gene 35262462 35263036 575.0 + 0 ENSG00000240392.1 processed_pseudogene RPL9P3 1 OTTHUMG00000157758.1 pseudo_consens,overlapping_locus +21863 chr14 HAVANA gene 35121846 35277614 6982.0 + 0 ENSG00000100890.15 protein_coding KIAA0391 1 OTTHUMG00000170997.8 overlapping_locus +21864 chr14 HAVANA gene 35122549 35317474 3857.0 + 0 ENSG00000258790.1 protein_coding AL121594.1 2 OTTHUMG00000171025.1 overlapping_locus +21865 chr14 HAVANA gene 35278633 35317493 6506.0 + 0 ENSG00000100902.10 protein_coding PSMA6 2 OTTHUMG00000140221.3 overlapping_locus +21866 chr14 HAVANA gene 35362232 35363628 624.0 - 0 ENSG00000258860.1 lincRNA AL133163.2 2 OTTHUMG00000171062.1 +21867 chr14 HAVANA gene 35388121 35389069 949.0 - 0 ENSG00000240023.1 processed_pseudogene AL133163.1 1 OTTHUMG00000157762.1 pseudo_consens +21868 chr14 HAVANA gene 35401511 35404749 2373.0 - 0 ENSG00000100906.10 protein_coding NFKBIA 1 OTTHUMG00000140220.4 +21869 chr14 HAVANA gene 35430260 35430631 372.0 + 0 ENSG00000259022.2 processed_pseudogene DNAJC8P1 1 OTTHUMG00000171063.2 pseudo_consens +21870 chr14 HAVANA gene 35447003 35447625 504.0 - 0 ENSG00000259017.1 lincRNA AL133163.3 2 OTTHUMG00000171064.1 +21871 chr14 HAVANA gene 35468272 35469330 764.0 + 0 ENSG00000259105.1 processed_pseudogene RPS3AP4 1 OTTHUMG00000171065.1 pseudo_consens +21872 chr14 HAVANA gene 35511825 35513089 1265.0 - 0 ENSG00000258783.1 processed_pseudogene KRT18P6 1 OTTHUMG00000171008.1 pseudo_consens +21873 chr14 HAVANA gene 35534042 35537054 3013.0 + 0 ENSG00000168348.3 protein_coding INSM2 2 OTTHUMG00000140223.1 +21874 chr14 ENSEMBL gene 35756327 35756463 137.0 + 0 ENSG00000253059.1 snoRNA RF00322 3 +21875 chr14 HAVANA gene 35765795 35767110 1316.0 + 0 ENSG00000257957.1 processed_pseudogene QRSL1P3 1 OTTHUMG00000170562.1 pseudo_consens +21876 chr14 HAVANA gene 35538352 35809304 14258.0 - 0 ENSG00000174373.16 protein_coding RALGAPA1 1 OTTHUMG00000170619.6 +21877 chr14 HAVANA gene 35819837 35820220 384.0 + 0 ENSG00000258300.2 processed_pseudogene NUTF2P2 1 OTTHUMG00000170563.2 pseudo_consens +21878 chr14 HAVANA gene 35819224 35826765 2867.0 - 0 ENSG00000258938.1 antisense AL162311.3 2 OTTHUMG00000170615.1 +21879 chr14 HAVANA gene 35873857 35875303 601.0 + 0 ENSG00000257272.1 lincRNA AL162311.1 2 OTTHUMG00000170564.1 overlapping_locus +21880 chr14 HAVANA gene 35881001 35881709 709.0 + 0 ENSG00000257307.1 processed_pseudogene AL162311.2 1 OTTHUMG00000170565.1 pseudo_consens,overlapping_locus +21881 chr14 HAVANA gene 35826318 35932325 3897.0 + 0 ENSG00000100916.13 protein_coding BRMS1L 2 OTTHUMG00000170559.3 overlapping_locus +21882 chr14 HAVANA gene 35947556 35950044 549.0 - 0 ENSG00000257614.1 lincRNA AL133304.1 2 OTTHUMG00000170567.1 +21883 chr14 HAVANA gene 36054197 36055313 1117.0 - 0 ENSG00000257720.1 processed_pseudogene ILF2P2 1 OTTHUMG00000170568.1 pseudo_consens +21884 chr14 HAVANA gene 35897982 36063743 477.0 + 0 ENSG00000258342.1 sense_overlapping AL133304.3 2 OTTHUMG00000170566.1 overlapping_locus +21885 chr14 HAVANA gene 36061026 36067190 886.0 - 0 ENSG00000257826.1 lincRNA AL133304.2 2 OTTHUMG00000170569.1 +21886 chr14 HAVANA gene 36070427 36165288 583.0 + 0 ENSG00000257585.1 lincRNA LINC00609 2 OTTHUMG00000170616.1 +21887 chr14 HAVANA gene 36136108 36176468 571.0 - 0 ENSG00000259104.2 lincRNA PTCSC3 2 OTTHUMG00000170617.2 +21888 chr14 ENSEMBL gene 36231555 36231774 220.0 - 0 ENSG00000252312.1 misc_RNA RN7SKP21 3 +21889 chr14 HAVANA gene 36214607 36235608 879.0 + 0 ENSG00000258844.1 lincRNA AL162511.1 2 OTTHUMG00000170618.1 +21890 chr14 HAVANA gene 36298558 36320676 3468.0 - 0 ENSG00000151332.18 protein_coding MBIP 1 OTTHUMG00000140222.4 +21891 chr14 HAVANA gene 36371165 36372383 1219.0 + 0 ENSG00000188831.4 transcribed_unprocessed_pseudogene DPPA3P2 2 OTTHUMG00000170728.1 +21892 chr14 ENSEMBL gene 36405214 36405274 61.0 + 0 ENSG00000238540.1 snRNA RNU7-93P 3 +21893 chr14 HAVANA gene 36473288 36513829 3108.0 - 0 ENSG00000229415.9 protein_coding SFTA3 1 OTTHUMG00000170540.2 overlapping_locus +21894 chr14 HAVANA gene 36473207 36519521 1116.0 - 0 ENSG00000257520.1 processed_transcript AL132857.1 2 OTTHUMG00000163888.1 overlapping_locus +21895 chr14 HAVANA gene 36516392 36521149 3165.0 - 0 ENSG00000136352.17 protein_coding NKX2-1 2 OTTHUMG00000140225.7 overlapping_locus +21896 chr14 HAVANA gene 36519278 36523016 1775.0 + 0 ENSG00000253563.2 antisense NKX2-1-AS1 2 OTTHUMG00000163889.2 +21897 chr14 HAVANA gene 36533506 36534538 708.0 - 0 ENSG00000258467.1 unprocessed_pseudogene PHKBP2 1 OTTHUMG00000170729.1 pseudo_consens +21898 chr14 HAVANA gene 36577543 36578005 463.0 - 0 ENSG00000243730.2 processed_pseudogene RPL29P3 1 OTTHUMG00000157774.2 pseudo_consens +21899 chr14 HAVANA gene 36580579 36582607 1261.0 - 0 ENSG00000136327.6 protein_coding NKX2-8 2 OTTHUMG00000028772.6 +21900 chr14 ENSEMBL gene 36593839 36594147 309.0 - 0 ENSG00000201395.1 misc_RNA RN7SKP257 3 +21901 chr14 HAVANA gene 36320753 36656163 1737.0 + 0 ENSG00000283098.1 bidirectional_promoter_lncRNA AL132857.2 2 OTTHUMG00000191574.1 ncRNA_host +21902 chr14 HAVANA gene 36647083 36658801 2613.0 - 0 ENSG00000258661.1 antisense AL079303.1 2 OTTHUMG00000170732.1 +21903 chr14 HAVANA gene 36657568 36679715 6035.0 + 0 ENSG00000198807.12 protein_coding PAX9 2 OTTHUMG00000140251.3 +21904 chr14 HAVANA gene 36788644 36807163 526.0 + 0 ENSG00000258690.1 antisense AL162464.2 2 OTTHUMG00000170734.1 +21905 chr14 HAVANA gene 36808871 36828729 554.0 + 0 ENSG00000258601.1 antisense AL162464.1 2 OTTHUMG00000170735.1 +21906 chr14 ENSEMBL gene 36952309 36952391 83.0 - 0 ENSG00000266327.1 miRNA MIR4503 3 +21907 chr14 HAVANA gene 37097062 37098563 828.0 - 0 ENSG00000258827.2 sense_intronic AL079304.1 2 OTTHUMG00000170736.2 overlapping_locus +21908 chr14 HAVANA gene 36678431 37172866 3703.0 - 0 ENSG00000183032.11 protein_coding SLC25A21 2 OTTHUMG00000140250.2 ncRNA_host,overlapping_locus +21909 chr14 HAVANA gene 37171888 37173811 1924.0 + 0 ENSG00000258708.1 antisense SLC25A21-AS1 2 OTTHUMG00000170737.1 +21910 chr14 ENSEMBL gene 37187219 37187314 96.0 + 0 ENSG00000252746.1 snRNA RNU6-273P 3 +21911 chr14 ENSEMBL gene 37434469 37434573 105.0 - 0 ENSG00000207046.1 snRNA RNU6-886P 3 +21912 chr14 HAVANA gene 37197913 37552361 20250.0 + 0 ENSG00000151338.18 protein_coding MIPOL1 1 OTTHUMG00000140252.3 +21913 chr14 HAVANA gene 37556158 37567095 532.0 - 0 ENSG00000259087.5 lincRNA AL121790.2 2 OTTHUMG00000170994.1 +21914 chr14 HAVANA gene 37564047 37579125 738.0 + 0 ENSG00000258414.1 lincRNA AL121790.1 2 OTTHUMG00000170995.2 +21915 chr14 HAVANA gene 37589984 37596059 3982.0 - 0 ENSG00000129514.5 protein_coding FOXA1 2 OTTHUMG00000140253.2 +21916 chr14 ENSEMBL gene 37720425 37720561 137.0 + 0 ENSG00000200385.1 snoRNA RF00406 3 +21917 chr14 ENSEMBL gene 37827798 37827904 107.0 - 0 ENSG00000201431.1 snRNA RNU6-1277P 3 +21918 chr14 HAVANA gene 37896060 37902372 4125.0 - 0 ENSG00000259091.1 antisense LINC00517 2 OTTHUMG00000170594.2 +21919 chr14 HAVANA gene 38003113 38004847 364.0 - 0 ENSG00000258696.1 antisense AL359233.1 2 OTTHUMG00000170668.1 +21920 chr14 HAVANA gene 37595847 38041442 8361.0 + 0 ENSG00000139865.16 protein_coding TTC6 1 OTTHUMG00000157369.8 ncRNA_host +21921 chr14 HAVANA gene 38034287 38194281 1153.0 - 0 ENSG00000259048.1 antisense AL392023.2 2 OTTHUMG00000170669.1 +21922 chr14 HAVANA gene 38190983 38202923 531.0 + 0 ENSG00000258649.1 lincRNA AL392023.1 2 OTTHUMG00000170667.1 +21923 chr14 HAVANA gene 38207999 38213067 4295.0 + 0 ENSG00000139874.5 protein_coding SSTR1 2 OTTHUMG00000140249.3 retrogene +21924 chr14 HAVANA gene 38254103 38256369 2267.0 - 0 ENSG00000176435.6 protein_coding CLEC14A 2 OTTHUMG00000140248.1 +21925 chr14 HAVANA gene 38290953 38311930 1044.0 + 0 ENSG00000259072.1 lincRNA AL161751.1 2 OTTHUMG00000170693.1 +21926 chr14 HAVANA gene 38605255 38606098 844.0 + 0 ENSG00000271468.1 processed_pseudogene AL357094.1 1 OTTHUMG00000184397.1 pseudo_consens +21927 chr14 HAVANA gene 38727275 38728481 1207.0 + 0 ENSG00000258948.2 processed_pseudogene KRT8P1 1 OTTHUMG00000170692.2 pseudo_consens +21928 chr14 HAVANA gene 38835389 38835788 400.0 + 0 ENSG00000258680.2 processed_pseudogene AL132994.1 2 OTTHUMG00000170747.2 +21929 chr14 HAVANA gene 38749339 38948273 4860.0 - 0 ENSG00000259070.5 lincRNA LINC00639 2 OTTHUMG00000170746.2 +21930 chr14 HAVANA gene 38973399 38974085 687.0 - 0 ENSG00000270713.1 processed_pseudogene AL132994.2 1 OTTHUMG00000184390.1 pseudo_consens +21931 chr14 ENSEMBL gene 38987281 38987383 103.0 + 0 ENSG00000199285.1 misc_RNA RF00019 3 +21932 chr14 HAVANA gene 39090901 39091101 201.0 + 0 ENSG00000259121.2 processed_pseudogene AL109628.1 1 OTTHUMG00000170748.2 pseudo_consens +21933 chr14 HAVANA gene 39103140 39103812 500.0 + 0 ENSG00000258651.1 lincRNA SEC23A-AS1 2 OTTHUMG00000170749.1 +21934 chr14 HAVANA gene 39108342 39108707 366.0 + 0 ENSG00000258591.2 processed_pseudogene PPIAP4 1 OTTHUMG00000170750.3 pseudo_consens +21935 chr14 HAVANA gene 39031919 39109646 8945.0 - 0 ENSG00000100934.14 protein_coding SEC23A 1 OTTHUMG00000028812.6 +21936 chr14 HAVANA gene 39114223 39136973 2532.0 + 0 ENSG00000092208.17 protein_coding GEMIN2 2 OTTHUMG00000028816.9 +21937 chr14 HAVANA gene 39147833 39151363 3154.0 + 0 ENSG00000285830.1 antisense AL109628.2 2 OTTHUMG00000192887.1 +21938 chr14 HAVANA gene 39156742 39157852 740.0 + 0 ENSG00000241984.2 processed_pseudogene RPL7AP2 1 OTTHUMG00000158046.3 pseudo_consens +21939 chr14 HAVANA gene 39147811 39170532 4533.0 - 0 ENSG00000182400.14 protein_coding TRAPPC6B 1 OTTHUMG00000140259.4 +21940 chr14 HAVANA gene 39174885 39175880 530.0 - 0 ENSG00000259083.1 antisense AL132639.3 2 OTTHUMG00000170768.1 +21941 chr14 HAVANA gene 39175183 39183218 4201.0 + 0 ENSG00000100941.8 protein_coding PNN 2 OTTHUMG00000028821.5 +21942 chr14 HAVANA gene 39211781 39212255 475.0 + 0 ENSG00000258671.2 processed_pseudogene AL132639.1 1 OTTHUMG00000170751.2 pseudo_consens +21943 chr14 HAVANA gene 39215065 39216335 1271.0 + 0 ENSG00000270503.1 processed_pseudogene YTHDF2P1 1 OTTHUMG00000184431.1 pseudo_consens +21944 chr14 HAVANA gene 39265703 39267061 1359.0 - 0 ENSG00000258940.2 antisense AL132639.2 2 OTTHUMG00000170769.2 +21945 chr14 HAVANA gene 39370279 39370756 478.0 - 0 ENSG00000271424.1 processed_pseudogene AL157791.2 1 OTTHUMG00000184531.1 pseudo_consens +21946 chr14 HAVANA gene 39385404 39387102 1699.0 - 0 ENSG00000259100.1 processed_pseudogene AL157791.1 1 OTTHUMG00000170675.1 pseudo_consens +21947 chr14 HAVANA gene 39230231 39388513 10539.0 + 0 ENSG00000150527.17 protein_coding MIA2 2 OTTHUMG00000028831.7 +21948 chr14 HAVANA gene 39397669 39432500 3853.0 - 0 ENSG00000165355.7 protein_coding FBXO33 2 OTTHUMG00000140257.5 +21949 chr14 HAVANA gene 39474840 39513780 1209.0 + 0 ENSG00000258526.5 lincRNA AL049875.1 2 OTTHUMG00000170672.1 +21950 chr14 HAVANA gene 40386252 40386794 453.0 + 0 ENSG00000258418.1 lincRNA AL352977.1 2 OTTHUMG00000170677.1 +21951 chr14 HAVANA gene 40387558 40389140 547.0 + 0 ENSG00000258480.1 lincRNA AL352977.2 2 OTTHUMG00000170678.1 +21952 chr14 HAVANA gene 40954898 40975877 696.0 + 0 ENSG00000251363.2 lincRNA LINC02315 2 OTTHUMG00000170679.1 +21953 chr14 HAVANA gene 41296286 41298734 2449.0 + 0 ENSG00000258385.1 processed_pseudogene AL391516.1 1 OTTHUMG00000170689.1 pseudo_consens +21954 chr14 HAVANA gene 41514972 41515350 379.0 - 0 ENSG00000279972.1 TEC AL356596.1 2 OTTHUMG00000172922.1 +21955 chr14 HAVANA gene 41555662 41556055 394.0 - 0 ENSG00000258901.2 processed_pseudogene AL121821.2 1 OTTHUMG00000170690.2 pseudo_consens +21956 chr14 ENSEMBL gene 41594463 41594591 129.0 + 0 ENSG00000251858.1 snoRNA RF00322 3 +21957 chr14 HAVANA gene 41587861 41604856 530.0 - 0 ENSG00000258636.1 lincRNA AL121821.1 2 OTTHUMG00000170691.1 +21958 chr14 HAVANA gene 41742639 41742963 325.0 + 0 ENSG00000258536.1 processed_pseudogene FKBP1BP1 1 OTTHUMG00000170681.1 pseudo_consens,overlapping_locus +21959 chr14 HAVANA gene 41607570 41904549 6140.0 + 0 ENSG00000165379.13 protein_coding LRFN5 2 OTTHUMG00000140261.4 overlapping_locus +21960 chr14 HAVANA gene 42259731 42268586 318.0 - 0 ENSG00000259149.1 lincRNA AL445074.1 2 OTTHUMG00000170695.1 +21961 chr14 HAVANA gene 42412573 42528888 854.0 + 0 ENSG00000258850.1 lincRNA AL450442.1 2 OTTHUMG00000170696.1 overlapping_locus +21962 chr14 HAVANA gene 42608868 42609577 710.0 + 0 ENSG00000258505.1 transcribed_processed_pseudogene AL442163.2 1 OTTHUMG00000170697.2 pseudo_consens,overlapping_locus +21963 chr14 HAVANA gene 42657763 42657918 156.0 - 0 ENSG00000258622.2 processed_pseudogene AL442163.3 2 OTTHUMG00000170698.2 +21964 chr14 HAVANA gene 42362983 42703655 515.0 + 0 ENSG00000258394.1 sense_overlapping AL442163.1 2 OTTHUMG00000170702.2 overlapping_locus +21965 chr14 HAVANA gene 42807378 42808112 735.0 - 0 ENSG00000258934.1 processed_pseudogene AL356800.1 1 OTTHUMG00000170703.1 pseudo_consens +21966 chr14 HAVANA gene 42989201 42989483 283.0 + 0 ENSG00000259047.1 processed_pseudogene AL163153.1 2 OTTHUMG00000170704.1 +21967 chr14 HAVANA gene 43274824 43275697 874.0 + 0 ENSG00000258406.1 processed_pseudogene AL445383.1 2 OTTHUMG00000170705.1 +21968 chr14 HAVANA gene 43300263 43300595 333.0 + 0 ENSG00000259051.1 processed_pseudogene HNRNPUP1 1 OTTHUMG00000170706.1 pseudo_consens +21969 chr14 HAVANA gene 43540883 43541826 944.0 - 0 ENSG00000258828.2 processed_pseudogene KRT8P2 1 OTTHUMG00000170707.2 pseudo_consens +21970 chr14 HAVANA gene 43592142 43592262 121.0 - 0 ENSG00000258387.1 processed_pseudogene AL358913.1 1 OTTHUMG00000170708.1 pseudo_consens +21971 chr14 HAVANA gene 43595136 43596683 1548.0 + 0 ENSG00000258894.1 processed_pseudogene AL358913.2 1 OTTHUMG00000170709.1 pseudo_consens +21972 chr14 HAVANA gene 44077534 44077884 351.0 - 0 ENSG00000259019.1 transcribed_processed_pseudogene EIF4BP1 1 OTTHUMG00000170683.1 pseudo_consens,overlapping_locus +21973 chr14 HAVANA gene 44120210 44120761 552.0 - 0 ENSG00000259137.1 processed_pseudogene AL109766.1 1 OTTHUMG00000170684.1 pseudo_consens,overlapping_locus +21974 chr14 HAVANA gene 44290997 44291718 722.0 - 0 ENSG00000259148.1 processed_pseudogene YWHAZP1 1 OTTHUMG00000170685.1 pseudo_consens,overlapping_locus +21975 chr14 HAVANA gene 43995781 44384545 257.0 - 0 ENSG00000258969.1 lincRNA LINC02307 2 OTTHUMG00000170682.1 overlapping_locus +21976 chr14 HAVANA gene 44392531 44393716 268.0 - 0 ENSG00000259126.1 lincRNA AL161752.1 2 OTTHUMG00000170686.1 +21977 chr14 HAVANA gene 44444747 44480618 675.0 - 0 ENSG00000258487.1 lincRNA LINC02277 2 OTTHUMG00000170687.1 +21978 chr14 HAVANA gene 44504342 44507279 2938.0 - 0 ENSG00000189139.5 protein_coding FSCB 2 OTTHUMG00000140262.1 +21979 chr14 HAVANA gene 44507407 44538513 801.0 + 0 ENSG00000258747.1 antisense AL356022.1 2 OTTHUMG00000170688.1 +21980 chr14 HAVANA gene 44763157 44782829 2904.0 - 0 ENSG00000258998.1 lincRNA LINC02302 2 OTTHUMG00000170717.1 +21981 chr14 HAVANA gene 44860316 44866247 5932.0 - 0 ENSG00000259000.1 processed_pseudogene DOCK11P1 1 OTTHUMG00000170718.1 pseudo_consens +21982 chr14 HAVANA gene 44887434 44887741 308.0 - 0 ENSG00000258509.1 processed_pseudogene AL049870.1 1 OTTHUMG00000170720.1 pseudo_consens,overlapping_locus +21983 chr14 HAVANA gene 44888556 44889041 486.0 - 0 ENSG00000259046.1 processed_pseudogene AL049870.4 1 OTTHUMG00000170721.1 pseudo_consens,overlapping_locus +21984 chr14 HAVANA gene 44876874 44897077 693.0 - 0 ENSG00000258633.1 antisense AL049870.2 2 OTTHUMG00000170719.1 overlapping_locus +21985 chr14 HAVANA gene 44897295 44907257 3864.0 + 0 ENSG00000179476.7 protein_coding C14orf28 1 OTTHUMG00000170722.1 +21986 chr14 HAVANA gene 44898908 44911863 360.0 - 0 ENSG00000258949.1 antisense AL049870.3 2 OTTHUMG00000170723.1 +21987 chr14 HAVANA gene 44924319 45042322 8076.0 - 0 ENSG00000179454.13 protein_coding KLHL28 1 OTTHUMG00000140263.5 +21988 chr14 HAVANA gene 44962208 45074431 10274.0 + 0 ENSG00000198718.12 protein_coding TOGARAM1 1 OTTHUMG00000140264.3 +21989 chr14 HAVANA gene 45079849 45080189 341.0 + 0 ENSG00000278147.1 lincRNA AL121809.2 2 OTTHUMG00000186825.1 +21990 chr14 HAVANA gene 45083045 45083977 849.0 - 0 ENSG00000249163.3 antisense AL121809.1 2 OTTHUMG00000170806.1 +21991 chr14 ENSEMBL gene 45088243 45088308 66.0 + 0 ENSG00000212615.1 snoRNA RF00151 3 +21992 chr14 ENSEMBL gene 45110883 45110968 86.0 + 0 ENSG00000239043.1 snoRNA SNORD127 3 +21993 chr14 HAVANA gene 45084099 45116282 4932.0 + 0 ENSG00000185246.17 protein_coding PRPF39 2 OTTHUMG00000140265.3 ncRNA_host +21994 chr14 HAVANA gene 45115600 45135319 2262.0 - 0 ENSG00000100442.10 protein_coding FKBP3 2 OTTHUMG00000140267.2 +21995 chr14 HAVANA gene 45135940 45200890 8468.0 + 0 ENSG00000187790.10 protein_coding FANCM 1 OTTHUMG00000170807.1 +21996 chr14 HAVANA gene 45203190 45253540 6250.0 - 0 ENSG00000129534.13 protein_coding MIS18BP1 2 OTTHUMG00000140266.4 +21997 chr14 ENSEMBL gene 45274359 45274477 119.0 - 0 ENSG00000199739.1 snRNA RNU6-552P 3 +21998 chr14 HAVANA gene 45290036 45290386 351.0 + 0 ENSG00000258608.1 processed_pseudogene DNAJC19P9 1 OTTHUMG00000170808.1 pseudo_consens +21999 chr14 HAVANA gene 45369215 45370839 1625.0 + 0 ENSG00000260046.1 lincRNA AL162632.3 2 OTTHUMG00000172925.1 +22000 chr14 HAVANA gene 45377268 45389286 548.0 + 0 ENSG00000257900.2 lincRNA AL162632.1 2 OTTHUMG00000170809.1 +22001 chr14 HAVANA gene 45502742 45503140 399.0 - 0 ENSG00000258746.2 processed_pseudogene AL162632.2 2 OTTHUMG00000170810.2 +22002 chr14 HAVANA gene 45567995 45569069 645.0 + 0 ENSG00000258845.1 lincRNA AL139354.1 2 OTTHUMG00000170730.1 +22003 chr14 HAVANA gene 45706250 45715952 1144.0 - 0 ENSG00000258616.5 lincRNA LINC02303 2 OTTHUMG00000170731.2 +22004 chr14 HAVANA gene 45940943 46501823 1349.0 + 0 ENSG00000258700.5 lincRNA LINC00871 2 OTTHUMG00000170871.3 +22005 chr14 HAVANA gene 46651010 46651821 812.0 - 0 ENSG00000165496.4 protein_coding RPL10L 2 OTTHUMG00000157869.2 retrogene +22006 chr14 ENSEMBL gene 46960423 46960546 124.0 + 0 ENSG00000251735.1 snoRNA RF00402 3 +22007 chr14 HAVANA gene 46996454 46997174 721.0 + 0 ENSG00000258392.1 processed_pseudogene RPA2P1 1 OTTHUMG00000170872.1 pseudo_consens +22008 chr14 HAVANA gene 47200575 47201104 530.0 - 0 ENSG00000244053.1 processed_pseudogene RPL13AP2 1 OTTHUMG00000157872.1 pseudo_consens,overlapping_locus +22009 chr14 HAVANA gene 47444106 47444494 389.0 - 0 ENSG00000214903.4 processed_pseudogene RPS15AP3 1 OTTHUMG00000157887.1 pseudo_consens,overlapping_locus +22010 chr14 HAVANA gene 46840092 47674954 7753.0 - 0 ENSG00000139915.19 protein_coding MDGA2 2 OTTHUMG00000029429.12 overlapping_locus +22011 chr14 ENSEMBL gene 47760995 47761104 110.0 - 0 ENSG00000263945.1 miRNA MIR548Y 3 +22012 chr14 HAVANA gene 47764954 47795092 3043.0 - 0 ENSG00000259129.5 lincRNA LINC00648 2 OTTHUMG00000170822.3 +22013 chr14 HAVANA gene 47801926 47802201 276.0 - 0 ENSG00000259117.1 processed_pseudogene AL121576.1 1 OTTHUMG00000170796.1 pseudo_consens +22014 chr14 HAVANA gene 48045481 48046216 614.0 + 0 ENSG00000258639.1 processed_pseudogene AL359212.1 1 OTTHUMG00000170797.1 pseudo_consens +22015 chr14 HAVANA gene 48319068 48319394 327.0 - 0 ENSG00000270359.1 processed_pseudogene AL358335.3 1 OTTHUMG00000184533.1 pseudo_consens +22016 chr14 ENSEMBL gene 48341226 48341332 107.0 - 0 ENSG00000207366.1 snRNA RNU6-297P 3 +22017 chr14 HAVANA gene 48398310 48399375 1066.0 + 0 ENSG00000258750.2 processed_pseudogene AL358335.1 1 OTTHUMG00000170799.2 pseudo_consens +22018 chr14 HAVANA gene 48489883 48490434 552.0 + 0 ENSG00000242417.1 processed_pseudogene RPL18P1 1 OTTHUMG00000157890.1 pseudo_consens +22019 chr14 HAVANA gene 48396508 48491767 487.0 - 0 ENSG00000258751.1 lincRNA AL358335.2 2 OTTHUMG00000170798.1 +22020 chr14 HAVANA gene 48819360 48819593 234.0 + 0 ENSG00000258381.1 processed_pseudogene AL512360.1 2 OTTHUMG00000170800.1 +22021 chr14 HAVANA gene 49057713 49077505 522.0 - 0 ENSG00000258868.1 lincRNA AL110505.1 2 OTTHUMG00000170868.1 +22022 chr14 HAVANA gene 49373966 49374383 418.0 + 0 ENSG00000258401.1 processed_pseudogene AL512361.1 1 OTTHUMG00000170869.1 pseudo_consens +22023 chr14 ENSEMBL gene 49552633 49552748 116.0 + 0 ENSG00000252424.1 rRNA_pseudogene RNA5SP384 3 +22024 chr14 HAVANA gene 49577392 49577794 403.0 - 0 ENSG00000244270.1 processed_pseudogene RPL32P29 2 OTTHUMG00000158047.1 overlapping_locus +22025 chr14 ENSEMBL gene 49586580 49586878 299.0 + 0 ENSG00000276168.1 misc_RNA RN7SL1 3 +22026 chr14 HAVANA gene 49586579 49586878 300.0 + 0 ENSG00000283029.1 non_coding AL139099.4 2 OTTHUMG00000171559.1 ncRNA_host +22027 chr14 ENSEMBL gene 49592236 49592337 102.0 - 0 ENSG00000252919.1 misc_RNA RF00019 3 +22028 chr14 HAVANA gene 49570984 49599164 9845.0 - 0 ENSG00000213741.10 protein_coding RPS29 1 OTTHUMG00000140272.6 ncRNA_host,overlapping_locus +22029 chr14 HAVANA gene 49599994 49600572 579.0 + 0 ENSG00000258568.1 processed_pseudogene RHOQP1 1 OTTHUMG00000170812.1 pseudo_consens,overlapping_locus +22030 chr14 HAVANA gene 49601011 49601124 114.0 - 0 ENSG00000278009.1 unprocessed_pseudogene AL139099.3 2 OTTHUMG00000187836.1 +22031 chr14 HAVANA gene 49598697 49614672 2359.0 + 0 ENSG00000165501.16 protein_coding LRR1 1 OTTHUMG00000140273.3 overlapping_locus +22032 chr14 HAVANA gene 49618519 49620685 746.0 - 0 ENSG00000165502.6 protein_coding RPL36AL 2 OTTHUMG00000152330.2 retrogene +22033 chr14 HAVANA gene 49620815 49623480 2469.0 - 0 ENSG00000258377.1 antisense AL139099.1 2 OTTHUMG00000170874.1 +22034 chr14 HAVANA gene 49620795 49623481 2687.0 + 0 ENSG00000168282.5 protein_coding MGAT2 2 OTTHUMG00000140271.1 +22035 chr14 HAVANA gene 49629291 49629890 401.0 - 0 ENSG00000258450.1 sense_intronic AL139099.2 2 OTTHUMG00000171560.1 overlapping_locus +22036 chr14 HAVANA gene 49625174 49635230 2963.0 - 0 ENSG00000165506.14 protein_coding DNAAF2 2 OTTHUMG00000152331.2 overlapping_locus +22037 chr14 HAVANA gene 49677369 49677893 525.0 + 0 ENSG00000259155.2 processed_pseudogene AL591767.3 1 OTTHUMG00000170875.2 pseudo_consens +22038 chr14 HAVANA gene 49681302 49681886 173.0 + 0 ENSG00000258462.2 processed_pseudogene AL591767.2 1 OTTHUMG00000170876.2 pseudo_consens +22039 chr14 ENSEMBL gene 49684544 49684665 122.0 + 0 ENSG00000221114.1 snRNA RNU6ATAC30P 3 +22040 chr14 HAVANA gene 49643555 49688422 2955.0 - 0 ENSG00000100479.12 protein_coding POLE2 2 OTTHUMG00000170813.2 +22041 chr14 HAVANA gene 49707667 49708792 568.0 - 0 ENSG00000258400.1 antisense AL591767.1 2 OTTHUMG00000170814.2 +22042 chr14 HAVANA gene 49693105 49753152 3006.0 + 0 ENSG00000197776.7 protein_coding KLHDC1 2 OTTHUMG00000140295.4 +22043 chr14 HAVANA gene 49767608 49786385 6841.0 + 0 ENSG00000165516.10 protein_coding KLHDC2 1 OTTHUMG00000140288.4 +22044 chr14 ENSEMBL gene 49839401 49839493 93.0 - 0 ENSG00000277634.1 misc_RNA RF00019 3 +22045 chr14 ENSEMBL gene 49839725 49839827 103.0 + 0 ENSG00000252474.1 snRNA RNU6-539P 3 +22046 chr14 HAVANA gene 49782083 49853203 9426.0 - 0 ENSG00000165525.17 protein_coding NEMF 2 OTTHUMG00000170857.5 ncRNA_host +22047 chr14 ENSEMBL gene 49853616 49853914 299.0 - 0 ENSG00000278771.1 misc_RNA RN7SL3 3 +22048 chr14 ENSEMBL gene 49862550 49862849 300.0 - 0 ENSG00000274012.1 misc_RNA RN7SL2 3 +22049 chr14 HAVANA gene 49861176 49864326 1327.0 - 0 ENSG00000282885.1 lincRNA AL627171.2 2 OTTHUMG00000191575.1 ncRNA_host +22050 chr14 HAVANA gene 49863072 49864379 1308.0 + 0 ENSG00000278002.1 lincRNA AL627171.1 2 OTTHUMG00000186829.1 +22051 chr14 HAVANA gene 49893092 49897054 3865.0 + 0 ENSG00000165527.6 protein_coding ARF6 2 OTTHUMG00000140296.2 retrogene +22052 chr14 ENSEMBL gene 49901850 49901950 101.0 - 0 ENSG00000251929.1 snRNA RNU6-189P 3 +22053 chr14 ENSEMBL gene 49913493 49913760 268.0 - 0 ENSG00000274704.1 misc_RNA RF00017 3 +22054 chr14 ENSEMBL gene 49966399 49966511 113.0 + 0 ENSG00000278038.1 miRNA MIR6076 3 +22055 chr14 HAVANA gene 50050368 50051336 969.0 + 0 ENSG00000270788.1 processed_pseudogene PDLIM1P1 1 OTTHUMG00000184391.1 pseudo_consens +22056 chr14 HAVANA gene 50052857 50053569 713.0 + 0 ENSG00000243038.1 processed_pseudogene AL117692.1 1 OTTHUMG00000157899.1 pseudo_consens +22057 chr14 ENSEMBL gene 50068568 50068873 306.0 + 0 ENSG00000201358.1 misc_RNA RN7SKP193 3 +22058 chr14 ENSEMBL gene 50086982 50087083 102.0 + 0 ENSG00000251792.1 misc_RNA RF00019 3 +22059 chr14 HAVANA gene 49927571 50092643 14763.0 - 0 ENSG00000214900.9 lincRNA LINC01588 2 OTTHUMG00000171567.4 +22060 chr14 HAVANA gene 50108632 50116600 2055.0 - 0 ENSG00000100483.13 protein_coding VCPKMT 2 OTTHUMG00000029531.6 +22061 chr14 HAVANA gene 50117120 50231558 6938.0 - 0 ENSG00000100485.11 protein_coding SOS2 1 OTTHUMG00000140292.4 +22062 chr14 ENSEMBL gene 50299855 50299946 92.0 - 0 ENSG00000264712.3 miRNA MIR4504 3 +22063 chr14 HAVANA gene 50237563 50312548 6879.0 - 0 ENSG00000087299.11 protein_coding L2HGDH 1 OTTHUMG00000140289.3 ncRNA_host +22064 chr14 HAVANA gene 50326526 50327909 446.0 - 0 ENSG00000259071.1 lincRNA AL359397.2 2 OTTHUMG00000170886.1 +22065 chr14 HAVANA gene 50312326 50335558 11297.0 + 0 ENSG00000125375.14 protein_coding ATP5S 2 OTTHUMG00000170866.4 +22066 chr14 HAVANA gene 50397013 50398345 501.0 + 0 ENSG00000258857.1 lincRNA AL359397.1 2 OTTHUMG00000170887.1 +22067 chr14 HAVANA gene 50329404 50416461 6149.0 - 0 ENSG00000100490.9 protein_coding CDKL1 1 OTTHUMG00000140290.6 +22068 chr14 HAVANA gene 50448807 50456742 502.0 + 0 ENSG00000259113.1 lincRNA AL118556.1 2 OTTHUMG00000170889.1 +22069 chr14 ENSEMBL gene 50468397 50468498 102.0 - 0 ENSG00000201573.1 misc_RNA RF00019 3 +22070 chr14 HAVANA gene 50471769 50472592 824.0 + 0 ENSG00000273675.1 processed_pseudogene AL118556.2 2 OTTHUMG00000187837.2 +22071 chr14 HAVANA gene 50418501 50561126 7620.0 - 0 ENSG00000012983.11 protein_coding MAP4K5 2 OTTHUMG00000170888.3 ncRNA_host +22072 chr14 HAVANA gene 50571919 50572140 222.0 - 0 ENSG00000258577.1 processed_pseudogene SNRPGP1 1 OTTHUMG00000170979.1 pseudo_consens +22073 chr14 HAVANA gene 50532509 50633068 4360.0 + 0 ENSG00000198513.11 protein_coding ATL1 2 OTTHUMG00000140297.6 +22074 chr14 ENSEMBL gene 50637691 50637981 291.0 - 0 ENSG00000243103.3 misc_RNA RN7SL452P 3 +22075 chr14 HAVANA gene 50662511 50663178 668.0 - 0 ENSG00000269906.1 sense_intronic AL606834.1 2 OTTHUMG00000183927.1 overlapping_locus +22076 chr14 HAVANA gene 50632058 50668331 5630.0 - 0 ENSG00000151748.14 protein_coding SAV1 1 OTTHUMG00000140293.7 ncRNA_host,overlapping_locus +22077 chr14 HAVANA gene 50704343 50705511 1169.0 - 0 ENSG00000258491.2 processed_pseudogene ZFP64P1 2 OTTHUMG00000170900.2 +22078 chr14 HAVANA gene 50723777 50724272 496.0 - 0 ENSG00000270062.1 sense_intronic AL606834.2 2 OTTHUMG00000183928.1 overlapping_locus +22079 chr14 HAVANA gene 50821880 50823501 392.0 + 0 ENSG00000258843.1 antisense AL133485.1 2 OTTHUMG00000170980.1 +22080 chr14 HAVANA gene 50719763 50831121 13683.0 - 0 ENSG00000100503.23 protein_coding NIN 2 OTTHUMG00000029569.16 overlapping_locus +22081 chr14 HAVANA gene 50831962 50838100 2430.0 + 0 ENSG00000285747.1 lincRNA AL133485.2 2 OTTHUMG00000192875.1 +22082 chr14 ENSEMBL gene 50844625 50844712 88.0 + 0 ENSG00000252945.1 snoRNA RF00593 3 +22083 chr14 HAVANA gene 50848122 50865659 174.0 + 0 ENSG00000258687.1 antisense AL358334.1 2 OTTHUMG00000170981.1 +22084 chr14 HAVANA gene 50872160 50904970 4444.0 + 0 ENSG00000131969.14 protein_coding ABHD12B 2 OTTHUMG00000140286.4 +22085 chr14 HAVANA gene 50912226 50913358 535.0 + 0 ENSG00000258745.1 antisense AL358334.3 2 OTTHUMG00000171000.1 +22086 chr14 HAVANA gene 50857891 50944736 4798.0 - 0 ENSG00000100504.16 protein_coding PYGL 1 OTTHUMG00000166596.6 +22087 chr14 HAVANA gene 50956259 50962002 4714.0 - 0 ENSG00000258711.2 lincRNA AL358334.2 2 OTTHUMG00000171001.2 +22088 chr14 HAVANA gene 51088957 51091288 1131.0 + 0 ENSG00000259055.1 antisense AL591770.1 2 OTTHUMG00000171002.1 +22089 chr14 HAVANA gene 50975262 51096061 8945.0 - 0 ENSG00000100505.13 protein_coding TRIM9 1 OTTHUMG00000140291.2 +22090 chr14 ENSEMBL gene 51244090 51244224 135.0 + 0 ENSG00000201376.1 snoRNA RF00156 3 +22091 chr14 ENSEMBL gene 51253933 51254023 91.0 - 0 ENSG00000201820.1 misc_RNA RF00019 3 +22092 chr14 HAVANA gene 51240162 51257546 4499.0 + 0 ENSG00000139921.12 protein_coding TMX1 2 OTTHUMG00000171003.3 ncRNA_host +22093 chr14 HAVANA gene 51304416 51328386 682.0 - 0 ENSG00000258955.1 lincRNA LINC00519 2 OTTHUMG00000171090.1 +22094 chr14 HAVANA gene 51333393 51365557 1568.0 + 0 ENSG00000258479.5 lincRNA LINC00640 2 OTTHUMG00000171072.1 +22095 chr14 HAVANA gene 51344914 51385603 813.0 - 0 ENSG00000258942.1 lincRNA AL358332.1 2 OTTHUMG00000171073.1 +22096 chr14 HAVANA gene 51392128 51397135 572.0 - 0 ENSG00000258808.1 lincRNA LINC02310 2 OTTHUMG00000171074.1 +22097 chr14 HAVANA gene 51436038 51436963 926.0 + 0 ENSG00000258893.1 processed_pseudogene SETP2 1 OTTHUMG00000171075.1 pseudo_consens +22098 chr14 ENSEMBL gene 51522864 51522967 104.0 + 0 ENSG00000252400.1 snRNA RNU6-1291P 3 +22099 chr14 HAVANA gene 51454512 51599952 917.0 - 0 ENSG00000258537.5 lincRNA FRMD6-AS2 2 OTTHUMG00000171076.1 +22100 chr14 HAVANA gene 51637348 51637947 600.0 - 0 ENSG00000277050.1 antisense AL122125.1 2 OTTHUMG00000186831.1 +22101 chr14 HAVANA gene 51649516 51651744 2229.0 - 0 ENSG00000273888.1 antisense FRMD6-AS1 2 OTTHUMG00000186832.1 +22102 chr14 ENSEMBL gene 51692752 51692861 110.0 + 0 ENSG00000251756.1 rRNA_pseudogene RNA5SP385 3 +22103 chr14 ENSEMBL gene 51724103 51724209 107.0 + 0 ENSG00000207004.1 snRNA RNU6-301P 3 +22104 chr14 HAVANA gene 51489100 51730727 9416.0 + 0 ENSG00000139926.15 protein_coding FRMD6 1 OTTHUMG00000140294.3 ncRNA_host +22105 chr14 HAVANA gene 51756996 51757988 993.0 + 0 ENSG00000258423.1 unprocessed_pseudogene OR7E105P 1 OTTHUMG00000171078.1 pseudo_consens +22106 chr14 HAVANA gene 51750560 51763114 448.0 + 0 ENSG00000259111.1 lincRNA AL079307.2 1 OTTHUMG00000171077.1 +22107 chr14 HAVANA gene 51763056 51764076 1021.0 - 0 ENSG00000258550.1 unprocessed_pseudogene OR7E106P 1 OTTHUMG00000171079.1 pseudo_consens +22108 chr14 HAVANA gene 51771789 51772086 298.0 - 0 ENSG00000258849.1 unprocessed_pseudogene OR7E159P 2 OTTHUMG00000171081.1 +22109 chr14 HAVANA gene 51787461 51787743 283.0 + 0 ENSG00000259157.1 unprocessed_pseudogene AL079307.3 1 OTTHUMG00000171082.1 pseudo_consens,overlapping_locus +22110 chr14 HAVANA gene 51765276 51825422 5982.0 + 0 ENSG00000258535.1 sense_overlapping AL079307.1 2 OTTHUMG00000171080.1 overlapping_locus +22111 chr14 HAVANA gene 51916145 51918571 529.0 - 0 ENSG00000258928.1 antisense AL358333.2 1 OTTHUMG00000171084.1 +22112 chr14 HAVANA gene 51967003 51969800 479.0 - 0 ENSG00000259007.1 antisense AL358333.3 2 OTTHUMG00000171085.1 +22113 chr14 HAVANA gene 51826195 51979342 6379.0 + 0 ENSG00000186469.8 protein_coding GNG2 2 OTTHUMG00000171083.3 +22114 chr14 HAVANA gene 51982520 51987219 467.0 - 0 ENSG00000258854.1 antisense AL358333.1 2 OTTHUMG00000171086.1 +22115 chr14 HAVANA gene 51989475 52010691 8323.0 + 0 ENSG00000087302.8 protein_coding RTRAF 2 OTTHUMG00000152332.3 +22116 chr14 HAVANA gene 52004803 52069228 6392.0 - 0 ENSG00000087303.17 protein_coding NID2 2 OTTHUMG00000140298.2 +22117 chr14 HAVANA gene 52117602 52117995 394.0 + 0 ENSG00000258981.1 processed_pseudogene COX5AP2 1 OTTHUMG00000171088.1 pseudo_consens +22118 chr14 HAVANA gene 52111122 52129625 349.0 - 0 ENSG00000258694.1 lincRNA LINC02319 2 OTTHUMG00000171087.1 +22119 chr14 HAVANA gene 52155740 52156179 440.0 + 0 ENSG00000258440.1 processed_pseudogene AL118557.1 1 OTTHUMG00000171089.1 pseudo_consens +22120 chr14 HAVANA gene 52267713 52276724 3033.0 + 0 ENSG00000168229.3 protein_coding PTGDR 1 OTTHUMG00000140299.2 +22121 chr14 HAVANA gene 52286797 52289268 1949.0 + 0 ENSG00000261208.1 processed_pseudogene AL365475.1 1 OTTHUMG00000172934.1 pseudo_consens +22122 chr14 HAVANA gene 52314305 52328606 2473.0 + 0 ENSG00000125384.6 protein_coding PTGER2 2 OTTHUMG00000140300.2 +22123 chr14 HAVANA gene 52430590 52552522 4739.0 - 0 ENSG00000087301.8 protein_coding TXNDC16 2 OTTHUMG00000171103.3 +22124 chr14 HAVANA gene 52553148 52637713 6193.0 + 0 ENSG00000180998.11 protein_coding GPR137C 2 OTTHUMG00000171104.2 +22125 chr14 HAVANA gene 52640839 52641566 581.0 + 0 ENSG00000258757.1 antisense AL133453.1 2 OTTHUMG00000171105.1 +22126 chr14 HAVANA gene 52639916 52695900 7548.0 - 0 ENSG00000197930.12 protein_coding ERO1A 2 OTTHUMG00000140301.3 +22127 chr14 HAVANA gene 52707172 52728587 7482.0 + 0 ENSG00000100519.11 protein_coding PSMC6 2 OTTHUMG00000152333.7 +22128 chr14 HAVANA gene 52730180 52774998 4978.0 + 0 ENSG00000198252.11 protein_coding STYX 2 OTTHUMG00000140306.2 +22129 chr14 HAVANA gene 52775237 52777740 1426.0 + 0 ENSG00000259049.1 antisense AL139317.3 2 OTTHUMG00000171149.1 +22130 chr14 HAVANA gene 52775194 52791668 4009.0 - 0 ENSG00000100522.9 protein_coding GNPNAT1 1 OTTHUMG00000152334.5 +22131 chr14 HAVANA gene 52798904 52799061 158.0 - 0 ENSG00000258802.1 processed_pseudogene AL139317.2 1 OTTHUMG00000171151.1 pseudo_consens,overlapping_locus +22132 chr14 HAVANA gene 52792875 52820034 196.0 - 0 ENSG00000258698.1 lincRNA AL139317.1 2 OTTHUMG00000171150.1 overlapping_locus +22133 chr14 HAVANA gene 52871458 52872217 760.0 + 0 ENSG00000271075.1 processed_pseudogene AL139317.4 1 OTTHUMG00000184393.1 pseudo_consens +22134 chr14 HAVANA gene 52791785 52930019 2500.0 + 0 ENSG00000285664.1 antisense AL139317.5 2 OTTHUMG00000192708.1 +22135 chr14 HAVANA gene 52857268 52952435 8510.0 - 0 ENSG00000073712.14 protein_coding FERMT2 1 OTTHUMG00000140309.4 +22136 chr14 HAVANA gene 53011971 53012267 297.0 + 0 ENSG00000258503.1 processed_pseudogene AL352979.1 1 OTTHUMG00000171152.1 pseudo_consens +22137 chr14 HAVANA gene 53023055 53023597 247.0 + 0 ENSG00000258993.1 processed_pseudogene AL352979.3 1 OTTHUMG00000171153.1 pseudo_consens +22138 chr14 HAVANA gene 53036755 53038251 366.0 + 0 ENSG00000258985.1 antisense AL352979.2 2 OTTHUMG00000171154.1 +22139 chr14 HAVANA gene 53036745 53153282 17944.0 - 0 ENSG00000100523.14 protein_coding DDHD1 1 OTTHUMG00000140305.4 +22140 chr14 HAVANA gene 53153354 53157528 1076.0 + 0 ENSG00000258731.1 antisense AL356020.1 2 OTTHUMG00000171155.1 +22141 chr14 HAVANA gene 53612724 53613405 682.0 + 0 ENSG00000226132.1 processed_pseudogene RPS3AP46 1 OTTHUMG00000060736.1 pseudo_consens,overlapping_locus +22142 chr14 HAVANA gene 53599832 53614026 726.0 - 0 ENSG00000225680.1 lincRNA AL163953.1 1 OTTHUMG00000133689.1 +22143 chr14 HAVANA gene 53768942 53850882 602.0 - 0 ENSG00000235269.1 lincRNA LINC02331 2 OTTHUMG00000150105.1 +22144 chr14 HAVANA gene 53169054 53883740 3821.0 + 0 ENSG00000237356.6 processed_transcript AL365295.1 2 OTTHUMG00000133700.4 +22145 chr14 HAVANA gene 53917270 53917753 484.0 - 0 ENSG00000231922.1 processed_pseudogene AL138479.1 2 OTTHUMG00000060735.1 +22146 chr14 ENSEMBL gene 53948427 53948484 58.0 - 0 ENSG00000266431.1 miRNA MIR5580 3 +22147 chr14 HAVANA gene 53949736 53958761 3082.0 - 0 ENSG00000125378.15 protein_coding BMP4 1 OTTHUMG00000140303.4 retrogene +22148 chr14 HAVANA gene 53991101 53991995 895.0 - 0 ENSG00000224004.2 processed_pseudogene ATP5F1CP1 1 OTTHUMG00000029710.3 pseudo_consens +22149 chr14 HAVANA gene 54396849 54420218 1836.0 + 0 ENSG00000100526.19 protein_coding CDKN3 1 OTTHUMG00000140302.3 +22150 chr14 HAVANA gene 54423560 54441431 5060.0 - 0 ENSG00000100528.11 protein_coding CNIH1 1 OTTHUMG00000152335.3 +22151 chr14 HAVANA gene 54470709 54471218 385.0 + 0 ENSG00000258753.1 lincRNA AL359792.1 2 OTTHUMG00000170998.1 +22152 chr14 HAVANA gene 54474484 54489196 7966.0 - 0 ENSG00000197045.12 protein_coding GMFB 2 OTTHUMG00000140307.3 +22153 chr14 HAVANA gene 54509812 54539309 4564.0 + 0 ENSG00000100532.11 protein_coding CGRRF1 2 OTTHUMG00000140308.5 +22154 chr14 HAVANA gene 54684753 54687912 1001.0 - 0 ENSG00000285774.1 lincRNA AL133444.1 2 OTTHUMG00000193090.1 +22155 chr14 HAVANA gene 54567097 54793315 12170.0 + 0 ENSG00000020577.13 protein_coding SAMD4A 1 OTTHUMG00000170999.3 +22156 chr14 ENSEMBL gene 54859215 54859330 116.0 + 0 ENSG00000252019.1 snRNA RNU6ATAC9P 3 +22157 chr14 ENSEMBL gene 54878113 54878193 81.0 - 0 ENSG00000265432.1 miRNA MIR4308 3 +22158 chr14 HAVANA gene 54884849 54886213 1013.0 - 0 ENSG00000258872.2 transcribed_processed_pseudogene FDPSP3 1 OTTHUMG00000171028.2 pseudo_consens,overlapping_locus +22159 chr14 HAVANA gene 54842008 54902852 2951.0 - 0 ENSG00000131979.18 protein_coding GCH1 1 OTTHUMG00000029754.4 ncRNA_host,overlapping_locus +22160 chr14 HAVANA gene 55004813 55005687 875.0 - 0 ENSG00000233924.1 processed_pseudogene RPSAP13 1 OTTHUMG00000150485.1 pseudo_consens,overlapping_locus +22161 chr14 HAVANA gene 54938950 55027105 6385.0 - 0 ENSG00000198554.11 protein_coding WDHD1 2 OTTHUMG00000140304.8 overlapping_locus +22162 chr14 HAVANA gene 55027230 55049488 7043.0 + 0 ENSG00000180008.8 protein_coding SOCS4 1 OTTHUMG00000140311.2 +22163 chr14 HAVANA gene 55051631 55070192 6988.0 + 0 ENSG00000168175.14 protein_coding MAPK1IP1L 1 OTTHUMG00000171029.2 +22164 chr14 HAVANA gene 55124110 55145413 2397.0 + 0 ENSG00000131981.15 protein_coding LGALS3 1 OTTHUMG00000171030.4 +22165 chr14 HAVANA gene 55148112 55191678 3667.0 - 0 ENSG00000126787.12 protein_coding DLGAP5 1 OTTHUMG00000140310.2 +22166 chr14 HAVANA gene 55196727 55199013 568.0 - 0 ENSG00000258050.2 lincRNA AL139316.1 2 OTTHUMG00000171031.1 +22167 chr14 HAVANA gene 55229217 55229681 465.0 + 0 ENSG00000279392.1 processed_pseudogene AL158801.5 2 OTTHUMG00000191500.1 +22168 chr14 HAVANA gene 55240622 55241080 459.0 - 0 ENSG00000271180.1 processed_pseudogene AL158801.4 1 OTTHUMG00000184534.1 pseudo_consens +22169 chr14 HAVANA gene 55262767 55272075 748.0 - 0 ENSG00000258413.1 lincRNA AL158801.2 2 OTTHUMG00000171032.1 +22170 chr14 HAVANA gene 55282296 55282643 348.0 - 0 ENSG00000239686.1 processed_pseudogene AL158801.1 1 OTTHUMG00000157907.1 pseudo_consens +22171 chr14 ENSEMBL gene 55285227 55285558 332.0 + 0 ENSG00000278818.1 misc_RNA RF00017 3 +22172 chr14 HAVANA gene 55298644 55299231 588.0 + 0 ENSG00000258469.1 processed_pseudogene CHMP4BP1 1 OTTHUMG00000171034.1 pseudo_consens,overlapping_locus +22173 chr14 HAVANA gene 55325834 55339501 363.0 - 0 ENSG00000258455.1 antisense AL158801.3 2 OTTHUMG00000171035.1 +22174 chr14 HAVANA gene 55271303 55361918 4133.0 + 0 ENSG00000178974.9 protein_coding FBXO34 2 OTTHUMG00000171033.1 ncRNA_host,overlapping_locus +22175 chr14 HAVANA gene 55394940 55395233 294.0 - 0 ENSG00000259318.1 processed_pseudogene AL356801.1 2 OTTHUMG00000172130.1 overlapping_locus +22176 chr14 HAVANA gene 55366392 55411858 5052.0 - 0 ENSG00000126775.8 protein_coding ATG14 2 OTTHUMG00000172129.1 overlapping_locus +22177 chr14 HAVANA gene 55413556 55414059 504.0 - 0 ENSG00000239199.1 processed_pseudogene RPL21P6 2 OTTHUMG00000157908.1 overlapping_locus +22178 chr14 HAVANA gene 55413541 55456726 2407.0 - 0 ENSG00000182521.5 protein_coding TBPL2 2 OTTHUMG00000140313.4 overlapping_locus +22179 chr14 HAVANA gene 55543401 55544169 769.0 + 0 ENSG00000213641.4 processed_pseudogene RPL7AP4 1 OTTHUMG00000157913.1 pseudo_consens +22180 chr14 HAVANA gene 55546674 55548123 1120.0 + 0 ENSG00000271484.1 unprocessed_pseudogene ABI1P1 1 OTTHUMG00000184542.1 pseudo_consens +22181 chr14 HAVANA gene 55499278 55580110 3595.0 - 0 ENSG00000186615.10 antisense KTN1-AS1 2 OTTHUMG00000171057.1 +22182 chr14 ENSEMBL gene 55651534 55651634 101.0 + 0 ENSG00000200742.1 misc_RNA RF00019 3 +22183 chr14 HAVANA gene 55559072 55701526 17575.0 + 0 ENSG00000126777.17 protein_coding KTN1 1 OTTHUMG00000140312.6 ncRNA_host +22184 chr14 HAVANA gene 55766177 55767717 1541.0 + 0 ENSG00000177350.6 transcribed_processed_pseudogene RPL13AP3 1 OTTHUMG00000158048.1 pseudo_consens,overlapping_locus +22185 chr14 HAVANA gene 55748208 55773203 459.0 + 0 ENSG00000258784.1 lincRNA AL355773.1 2 OTTHUMG00000171058.1 overlapping_locus +22186 chr14 HAVANA gene 55781132 55796731 3482.0 - 0 ENSG00000258791.8 lincRNA LINC00520 2 OTTHUMG00000171059.6 +22187 chr14 HAVANA gene 55896547 55962970 1516.0 + 0 ENSG00000259868.2 processed_transcript AL163952.1 2 OTTHUMG00000172943.2 +22188 chr14 HAVANA gene 56117316 56117990 675.0 - 0 ENSG00000277763.1 lincRNA AL138995.1 2 OTTHUMG00000186850.1 +22189 chr14 HAVANA gene 56117814 56301526 6278.0 + 0 ENSG00000139946.9 protein_coding PELI2 2 OTTHUMG00000152336.3 +22190 chr14 HAVANA gene 56305838 56306394 557.0 + 0 ENSG00000275569.1 antisense AL355073.2 2 OTTHUMG00000186851.2 +22191 chr14 HAVANA gene 56303490 56310761 517.0 - 0 ENSG00000259483.1 lincRNA AL355073.1 2 OTTHUMG00000172126.1 +22192 chr14 HAVANA gene 56310880 56345001 846.0 + 0 ENSG00000259719.5 lincRNA LINC02284 2 OTTHUMG00000172127.1 +22193 chr14 HAVANA gene 56514331 56551309 2226.0 + 0 ENSG00000258803.1 lincRNA AL355103.1 2 OTTHUMG00000171066.1 overlapping_locus +22194 chr14 HAVANA gene 56633244 56648658 461.0 - 0 ENSG00000258428.5 antisense AL161757.2 2 OTTHUMG00000171067.1 +22195 chr14 HAVANA gene 56488354 56650606 8077.0 + 0 ENSG00000070269.13 protein_coding TMEM260 1 OTTHUMG00000152337.3 overlapping_locus +22196 chr14 HAVANA gene 56683421 56683741 321.0 - 0 ENSG00000242995.1 processed_pseudogene AL161757.1 1 OTTHUMG00000157919.1 pseudo_consens,overlapping_locus +22197 chr14 HAVANA gene 56648965 56730535 734.0 - 0 ENSG00000259133.5 antisense AL161757.5 2 OTTHUMG00000171068.1 overlapping_locus +22198 chr14 HAVANA gene 56759379 56765757 807.0 + 0 ENSG00000258703.1 lincRNA AL161757.3 2 OTTHUMG00000171069.1 +22199 chr14 HAVANA gene 56799905 56810479 3272.0 - 0 ENSG00000165588.16 protein_coding OTX2 2 OTTHUMG00000152338.8 +22200 chr14 ENSEMBL gene 56824375 56824656 282.0 - 0 ENSG00000243801.3 misc_RNA RN7SL461P 3 +22201 chr14 ENSEMBL gene 56824986 56825092 107.0 + 0 ENSG00000200818.1 snRNA RNU6-1204P 3 +22202 chr14 HAVANA gene 56817570 56893710 2251.0 - 0 ENSG00000258776.1 lincRNA AL161757.4 2 OTTHUMG00000171305.1 ncRNA_host +22203 chr14 HAVANA gene 56978409 56979621 1213.0 + 0 ENSG00000243388.1 processed_pseudogene RPL3P3 1 OTTHUMG00000157922.1 pseudo_consens,overlapping_locus +22204 chr14 HAVANA gene 57040885 57042504 1620.0 + 0 ENSG00000258758.1 processed_pseudogene AL137100.1 1 OTTHUMG00000171306.1 pseudo_consens,overlapping_locus +22205 chr14 HAVANA gene 57044646 57044960 315.0 - 0 ENSG00000259136.1 processed_pseudogene AL137100.2 2 OTTHUMG00000171307.1 +22206 chr14 HAVANA gene 57066260 57112660 1577.0 - 0 ENSG00000258592.1 lincRNA AL391152.1 2 OTTHUMG00000171308.1 +22207 chr14 HAVANA gene 56813183 57152177 3118.0 + 0 ENSG00000248550.3 lincRNA OTX2-AS1 2 OTTHUMG00000171304.1 ncRNA_host,overlapping_locus +22208 chr14 HAVANA gene 57200507 57269008 12575.0 - 0 ENSG00000070367.15 protein_coding EXOC5 1 OTTHUMG00000171309.3 +22209 chr14 HAVANA gene 57268909 57298742 13034.0 + 0 ENSG00000053770.11 protein_coding AP5M1 1 OTTHUMG00000140318.5 +22210 chr14 HAVANA gene 57355446 57359410 3965.0 + 0 ENSG00000259008.1 lincRNA AL355834.1 2 OTTHUMG00000171310.1 +22211 chr14 HAVANA gene 57390544 57415917 7653.0 + 0 ENSG00000139977.13 protein_coding NAA30 1 OTTHUMG00000171311.1 +22212 chr14 HAVANA gene 57469301 57493867 4107.0 - 0 ENSG00000100557.9 protein_coding CCDC198 1 OTTHUMG00000140317.6 +22213 chr14 HAVANA gene 57578409 57600404 1430.0 + 0 ENSG00000259039.2 antisense AL161804.1 2 OTTHUMG00000171319.2 +22214 chr14 HAVANA gene 57629841 57631162 1322.0 + 0 ENSG00000258856.2 transcribed_processed_pseudogene AL136520.1 1 OTTHUMG00000171320.2 pseudo_consens +22215 chr14 ENSEMBL gene 57837354 57837660 307.0 - 0 ENSG00000252837.1 misc_RNA RN7SKP99 3 +22216 chr14 HAVANA gene 57563922 57982194 4240.0 - 0 ENSG00000151812.14 protein_coding SLC35F4 1 OTTHUMG00000171317.2 ncRNA_host +22217 chr14 HAVANA gene 57993545 57994525 981.0 - 0 ENSG00000259969.1 sense_overlapping AL049838.1 2 OTTHUMG00000172945.1 +22218 chr14 HAVANA gene 58100985 58101574 590.0 + 0 ENSG00000258836.2 processed_pseudogene AL121579.2 1 OTTHUMG00000171023.2 pseudo_consens +22219 chr14 HAVANA gene 58141279 58141660 382.0 + 0 ENSG00000243023.2 processed_pseudogene UBA52P3 1 OTTHUMG00000158053.2 pseudo_consens +22220 chr14 ENSEMBL gene 58179771 58180064 294.0 + 0 ENSG00000243700.3 misc_RNA RN7SL598P 3 +22221 chr14 HAVANA gene 58184576 58185507 305.0 + 0 ENSG00000258519.1 processed_pseudogene AL121579.1 1 OTTHUMG00000171024.3 pseudo_consens +22222 chr14 HAVANA gene 58200080 58235636 4039.0 + 0 ENSG00000131966.13 protein_coding ACTR10 2 OTTHUMG00000171049.8 +22223 chr14 HAVANA gene 58264662 58269681 576.0 + 0 ENSG00000258682.1 sense_overlapping AL132989.1 2 OTTHUMG00000171097.1 overlapping_locus +22224 chr14 HAVANA gene 58244831 58272012 3119.0 + 0 ENSG00000100567.12 protein_coding PSMA3 2 OTTHUMG00000140319.7 overlapping_locus +22225 chr14 HAVANA gene 58284773 58285363 591.0 + 0 ENSG00000180189.10 processed_pseudogene HMGB1P14 1 OTTHUMG00000171109.2 pseudo_consens +22226 chr14 HAVANA gene 58288033 58289158 1126.0 + 0 ENSG00000279636.2 lincRNA LINC00216 2 OTTHUMG00000187383.1 +22227 chr14 ENSEMBL gene 58292293 58292388 96.0 - 0 ENSG00000252782.1 snRNA RNU6-341P 3 +22228 chr14 HAVANA gene 58265365 58298134 7409.0 - 0 ENSG00000257621.7 antisense PSMA3-AS1 2 OTTHUMG00000171179.3 ncRNA_host,overlapping_locus +22229 chr14 HAVANA gene 57999735 58298139 7565.0 - 0 ENSG00000139971.15 protein_coding ARMH4 1 OTTHUMG00000171173.4 ncRNA_host,overlapping_locus +22230 chr14 HAVANA gene 58298385 58373887 7568.0 + 0 ENSG00000032219.18 protein_coding ARID4A 1 OTTHUMG00000140320.7 +22231 chr14 HAVANA gene 58370023 58395641 399.0 - 0 ENSG00000258658.1 antisense AL139021.2 2 OTTHUMG00000171230.1 +22232 chr14 HAVANA gene 58395916 58408701 620.0 + 0 ENSG00000196860.7 protein_coding TOMM20L 2 OTTHUMG00000140323.2 overlapping_locus +22233 chr14 HAVANA gene 58398557 58427125 436.0 + 0 ENSG00000258378.1 antisense AL139021.1 2 OTTHUMG00000171140.1 overlapping_locus +22234 chr14 HAVANA gene 58408494 58427614 1500.0 - 0 ENSG00000100575.13 protein_coding TIMM9 1 OTTHUMG00000140322.7 +22235 chr14 ENSEMBL gene 58441844 58441992 149.0 + 0 ENSG00000252198.1 misc_RNA RF00019 3 +22236 chr14 HAVANA gene 58463971 58464136 166.0 + 0 ENSG00000258650.1 processed_pseudogene HSBP1P1 1 OTTHUMG00000171142.2 pseudo_consens,overlapping_locus +22237 chr14 HAVANA gene 58521223 58521988 766.0 + 0 ENSG00000258900.1 processed_pseudogene HNRNPCP1 1 OTTHUMG00000171161.1 pseudo_consens,overlapping_locus +22238 chr14 HAVANA gene 58427385 58551289 10184.0 + 0 ENSG00000100578.14 protein_coding KIAA0586 1 OTTHUMG00000171141.6 ncRNA_host,overlapping_locus +22239 chr14 HAVANA gene 58564146 58564616 471.0 + 0 ENSG00000239510.2 processed_pseudogene RPL9P5 1 OTTHUMG00000157933.2 pseudo_consens +22240 chr14 HAVANA gene 58633967 58648321 4490.0 + 0 ENSG00000165617.14 protein_coding DACT1 1 OTTHUMG00000140324.7 +22241 chr14 HAVANA gene 58794654 58795029 376.0 + 0 ENSG00000213598.4 processed_pseudogene AL049873.1 1 OTTHUMG00000157936.1 pseudo_consens +22242 chr14 HAVANA gene 58827679 58828176 498.0 - 0 ENSG00000258734.2 processed_pseudogene AL049873.2 1 OTTHUMG00000171091.2 pseudo_consens +22243 chr14 HAVANA gene 58646631 59017532 2430.0 + 0 ENSG00000258583.6 lincRNA LINC01500 2 OTTHUMG00000171092.2 overlapping_locus +22244 chr14 HAVANA gene 59135488 59136421 934.0 - 0 ENSG00000258685.2 processed_pseudogene AL359219.1 1 OTTHUMG00000171093.2 pseudo_consens +22245 chr14 HAVANA gene 59181593 59181940 348.0 + 0 ENSG00000258996.2 processed_pseudogene PPIAP5 1 OTTHUMG00000171094.2 pseudo_consens +22246 chr14 HAVANA gene 59188646 59371405 10712.0 + 0 ENSG00000100592.15 protein_coding DAAM1 2 OTTHUMG00000140326.3 +22247 chr14 HAVANA gene 59429022 59465342 4977.0 - 0 ENSG00000181619.11 protein_coding GPR135 2 OTTHUMG00000140325.2 overlapping_locus +22248 chr14 HAVANA gene 59460363 59484430 3504.0 - 0 ENSG00000126790.11 protein_coding L3HYPDH 1 OTTHUMG00000028941.10 overlapping_locus +22249 chr14 HAVANA gene 59484443 59505410 4350.0 + 0 ENSG00000050130.17 protein_coding JKAMP 2 OTTHUMG00000171054.3 +22250 chr14 HAVANA gene 59479274 59525437 671.0 - 0 ENSG00000258782.3 processed_transcript AL121694.1 2 OTTHUMG00000171095.1 overlapping_locus +22251 chr14 HAVANA gene 59504539 59576831 3245.0 - 0 ENSG00000151838.11 protein_coding CCDC175 2 OTTHUMG00000171096.2 overlapping_locus +22252 chr14 ENSEMBL gene 59646962 59647020 59.0 - 0 ENSG00000263629.1 miRNA MIR5586 3 +22253 chr14 HAVANA gene 59595976 59870966 6209.0 - 0 ENSG00000139970.16 protein_coding RTN1 1 OTTHUMG00000028947.4 ncRNA_host +22254 chr14 HAVANA gene 59919423 59920339 507.0 - 0 ENSG00000261120.1 antisense AL133299.1 2 OTTHUMG00000175993.1 +22255 chr14 HAVANA gene 59919713 60063559 5316.0 + 0 ENSG00000131951.11 protein_coding LRRC9 2 OTTHUMG00000028948.5 +22256 chr14 HAVANA gene 59969116 60091783 572.0 - 0 ENSG00000258553.5 antisense AL157911.1 2 OTTHUMG00000171123.1 +22257 chr14 HAVANA gene 60158976 60159324 349.0 + 0 ENSG00000258896.1 processed_pseudogene SCOCP1 1 OTTHUMG00000171125.1 pseudo_consens,overlapping_locus +22258 chr14 HAVANA gene 60091911 60169133 22042.0 + 0 ENSG00000126773.12 protein_coding PCNX4 2 OTTHUMG00000150361.5 overlapping_locus +22259 chr14 HAVANA gene 60144120 60169856 3248.0 - 0 ENSG00000100612.13 protein_coding DHRS7 1 OTTHUMG00000140331.5 +22260 chr14 HAVANA gene 60179382 60180016 635.0 + 0 ENSG00000258563.2 processed_pseudogene PSMA3P 1 OTTHUMG00000171126.2 pseudo_consens +22261 chr14 HAVANA gene 60212462 60212912 451.0 - 0 ENSG00000242135.2 processed_pseudogene RPL17P2 1 OTTHUMG00000157939.2 pseudo_consens +22262 chr14 HAVANA gene 60240121 60248765 3154.0 - 0 ENSG00000254718.6 antisense AL157756.1 2 OTTHUMG00000166150.2 +22263 chr14 HAVANA gene 60245752 60299087 11860.0 + 0 ENSG00000100614.17 protein_coding PPM1A 1 OTTHUMG00000140333.7 +22264 chr14 HAVANA gene 60323236 60323907 338.0 + 0 ENSG00000258556.1 lincRNA LINC02322 2 OTTHUMG00000171137.1 +22265 chr14 HAVANA gene 60397757 60398281 525.0 + 0 ENSG00000258427.3 processed_pseudogene RBM8B 1 OTTHUMG00000171184.2 pseudo_consens +22266 chr14 HAVANA gene 60398934 60400013 631.0 - 0 ENSG00000259169.1 unprocessed_pseudogene GNRHR2P1 2 OTTHUMG00000171185.1 overlapping_locus +22267 chr14 HAVANA gene 60493766 60496885 3120.0 - 0 ENSG00000258692.2 transcribed_processed_pseudogene SALL4P7 2 OTTHUMG00000171186.2 overlapping_locus +22268 chr14 HAVANA gene 60508951 60512850 2787.0 + 0 ENSG00000184302.6 protein_coding SIX6 2 OTTHUMG00000152339.2 +22269 chr14 HAVANA gene 60396469 60515543 3464.0 - 0 ENSG00000179008.8 protein_coding C14orf39 2 OTTHUMG00000140332.4 overlapping_locus +22270 chr14 HAVANA gene 60544400 60544654 255.0 + 0 ENSG00000258764.1 transcribed_processed_pseudogene AL049874.4 2 OTTHUMG00000171188.1 overlapping_locus +22271 chr14 HAVANA gene 60515119 60554916 868.0 + 0 ENSG00000258670.1 antisense AL049874.3 2 OTTHUMG00000171187.1 overlapping_locus +22272 chr14 HAVANA gene 60572024 60572311 288.0 - 0 ENSG00000244756.1 processed_pseudogene AL049874.2 1 OTTHUMG00000157943.1 pseudo_consens +22273 chr14 HAVANA gene 60602146 60602533 388.0 - 0 ENSG00000241354.2 processed_pseudogene AL049874.1 1 OTTHUMG00000157955.2 pseudo_consens +22274 chr14 HAVANA gene 60639216 60642589 2086.0 + 0 ENSG00000258952.2 lincRNA SALRNA1 2 OTTHUMG00000171189.2 +22275 chr14 HAVANA gene 60643415 60658259 5430.0 - 0 ENSG00000126778.9 protein_coding SIX1 1 OTTHUMG00000140334.7 +22276 chr14 HAVANA gene 60709528 60724348 6658.0 - 0 ENSG00000100625.8 protein_coding SIX4 1 OTTHUMG00000028996.9 +22277 chr14 HAVANA gene 60779978 60780595 618.0 + 0 ENSG00000258445.3 processed_pseudogene AL132777.1 1 OTTHUMG00000171291.3 pseudo_consens,overlapping_locus +22278 chr14 HAVANA gene 60919240 60920155 916.0 - 0 ENSG00000258485.2 processed_pseudogene SRMP2 1 OTTHUMG00000171293.2 pseudo_consens +22279 chr14 HAVANA gene 60734742 60969953 3865.0 + 0 ENSG00000020426.10 protein_coding MNAT1 1 OTTHUMG00000152340.4 overlapping_locus +22280 chr14 HAVANA gene 60972272 60972466 195.0 - 0 ENSG00000258656.1 processed_pseudogene AL160236.1 2 OTTHUMG00000171295.1 overlapping_locus +22281 chr14 ENSEMBL gene 60974327 60974435 109.0 + 0 ENSG00000206870.1 snRNA RNU6-398P 3 +22282 chr14 HAVANA gene 60971451 60981358 5692.0 - 0 ENSG00000126814.6 protein_coding TRMT5 1 OTTHUMG00000171294.3 overlapping_locus +22283 chr14 HAVANA gene 60879714 60982585 200.0 + 0 ENSG00000258892.1 processed_transcript AL160236.2 2 OTTHUMG00000171292.1 ncRNA_host,overlapping_locus +22284 chr14 HAVANA gene 60981114 61083733 5147.0 + 0 ENSG00000139974.15 protein_coding SLC38A6 2 OTTHUMG00000140335.7 overlapping_locus +22285 chr14 HAVANA gene 61277370 61281840 4471.0 - 0 ENSG00000182107.6 protein_coding TMEM30B 2 OTTHUMG00000171426.1 retrogene +22286 chr14 HAVANA gene 61298164 61322818 4852.0 - 0 ENSG00000247287.2 antisense AL359220.1 2 OTTHUMG00000171532.1 +22287 chr14 HAVANA gene 61537508 61545287 593.0 - 0 ENSG00000258926.1 antisense AL355916.1 2 OTTHUMG00000171437.1 +22288 chr14 HAVANA gene 61187559 61550976 8833.0 + 0 ENSG00000027075.14 protein_coding PRKCH 1 OTTHUMG00000152341.6 overlapping_locus +22289 chr14 HAVANA gene 61556313 61570653 5148.0 - 0 ENSG00000250548.6 lincRNA LINC01303 2 OTTHUMG00000171534.1 +22290 chr14 HAVANA gene 61529128 61657964 779.0 + 0 ENSG00000258989.1 protein_coding AL355916.2 2 OTTHUMG00000171533.1 overlapping_locus +22291 chr14 HAVANA gene 61570540 61658696 2653.0 + 0 ENSG00000232774.7 lincRNA FLJ22447 2 OTTHUMG00000171535.1 overlapping_locus +22292 chr14 HAVANA gene 61681041 61695823 652.0 - 0 ENSG00000258777.1 lincRNA HIF1A-AS1 2 OTTHUMG00000171134.1 +22293 chr14 HAVANA gene 61695513 61748259 5151.0 + 0 ENSG00000100644.16 protein_coding HIF1A 1 OTTHUMG00000140344.2 overlapping_locus +22294 chr14 HAVANA gene 61715558 61751097 533.0 - 0 ENSG00000258667.1 lincRNA HIF1A-AS2 2 OTTHUMG00000171135.1 +22295 chr14 HAVANA gene 61734138 61776260 720.0 + 0 ENSG00000258964.1 processed_transcript AL137129.1 2 OTTHUMG00000171115.1 overlapping_locus +22296 chr14 HAVANA gene 61762357 61796428 2656.0 + 0 ENSG00000023608.4 protein_coding SNAPC1 2 OTTHUMG00000140343.2 overlapping_locus +22297 chr14 HAVANA gene 61801713 61803634 1922.0 + 0 ENSG00000279633.1 TEC AL137918.1 2 OTTHUMG00000172946.1 +22298 chr14 HAVANA gene 61831861 61832369 509.0 - 0 ENSG00000258956.2 processed_pseudogene COX4I1P1 1 OTTHUMG00000171139.2 pseudo_consens +22299 chr14 HAVANA gene 62069518 62081154 322.0 - 0 ENSG00000258842.1 lincRNA AL390816.1 2 OTTHUMG00000171116.2 +22300 chr14 HAVANA gene 61811974 62112550 15234.0 + 0 ENSG00000139973.16 protein_coding SYT16 1 OTTHUMG00000171106.3 +22301 chr14 HAVANA gene 62103378 62117175 737.0 - 0 ENSG00000258903.1 lincRNA AL390816.2 2 OTTHUMG00000171107.1 +22302 chr14 HAVANA gene 62114353 62130962 4637.0 + 0 ENSG00000186369.10 transcribed_unitary_pseudogene LINC00643 2 OTTHUMG00000171566.4 +22303 chr14 HAVANA gene 62134149 62139973 295.0 - 0 ENSG00000259142.1 lincRNA LINC00644 2 OTTHUMG00000171117.1 +22304 chr14 HAVANA gene 62150656 62152258 1066.0 - 0 ENSG00000270852.1 unprocessed_pseudogene AL390816.3 1 OTTHUMG00000184536.1 pseudo_consens +22305 chr14 HAVANA gene 62514872 62515123 252.0 - 0 ENSG00000258638.2 processed_pseudogene AL389895.1 1 OTTHUMG00000171111.2 pseudo_consens +22306 chr14 HAVANA gene 62604113 62605717 1605.0 - 0 ENSG00000258877.2 processed_pseudogene ATP5F1AP4 1 OTTHUMG00000171112.2 pseudo_consens +22307 chr14 HAVANA gene 62699454 63102037 12320.0 - 0 ENSG00000140015.19 protein_coding KCNH5 2 OTTHUMG00000029041.5 +22308 chr14 HAVANA gene 63123007 63123201 195.0 + 0 ENSG00000258995.1 processed_pseudogene PARP1P2 1 OTTHUMG00000171113.1 pseudo_consens +22309 chr14 HAVANA gene 63123033 63128214 814.0 - 0 ENSG00000259093.1 lincRNA AL137191.1 2 OTTHUMG00000171114.1 +22310 chr14 HAVANA gene 63204114 63293219 3793.0 + 0 ENSG00000126785.12 protein_coding RHOJ 2 OTTHUMG00000140342.5 +22311 chr14 HAVANA gene 63298126 63299547 880.0 - 0 ENSG00000258943.1 lincRNA AL049871.1 2 OTTHUMG00000171195.1 +22312 chr14 HAVANA gene 63312835 63318879 543.0 - 0 ENSG00000179600.3 protein_coding GPHB5 2 OTTHUMG00000168678.3 +22313 chr14 ENSEMBL gene 63479272 63479413 142.0 + 0 ENSG00000252800.1 scaRNA RF00601 3 +22314 chr14 HAVANA gene 63371357 63543374 9188.0 - 0 ENSG00000154001.13 protein_coding PPP2R5E 1 OTTHUMG00000140341.3 +22315 chr14 HAVANA gene 63543569 63544664 1096.0 + 0 ENSG00000261242.1 antisense AL136038.3 2 OTTHUMG00000172963.1 +22316 chr14 HAVANA gene 63567958 63568308 351.0 + 0 ENSG00000205767.4 processed_pseudogene AL136038.1 1 OTTHUMG00000157958.2 pseudo_consens +22317 chr14 HAVANA gene 63594031 63595291 1261.0 - 0 ENSG00000270878.1 processed_pseudogene AL136038.4 1 OTTHUMG00000184525.1 pseudo_consens +22318 chr14 HAVANA gene 63598874 63599248 283.0 + 0 ENSG00000258800.1 lincRNA AL136038.2 2 OTTHUMG00000171130.1 +22319 chr14 HAVANA gene 63601509 63601814 306.0 + 0 ENSG00000258645.2 processed_pseudogene HSPE1P2 1 OTTHUMG00000171131.2 pseudo_consens +22320 chr14 ENSEMBL gene 63618043 63618144 102.0 + 0 ENSG00000202490.1 snRNA RNU6-597P 3 +22321 chr14 ENSEMBL gene 63621760 63621871 112.0 + 0 ENSG00000206822.1 misc_RNA RF00019 3 +22322 chr14 ENSEMBL gene 63630678 63630781 104.0 + 0 ENSG00000207172.1 snRNA RNU6-1162P 3 +22323 chr14 HAVANA gene 63597039 63641861 3209.0 - 0 ENSG00000140006.11 protein_coding WDR89 2 OTTHUMG00000140340.5 +22324 chr14 HAVANA gene 63642143 63642696 554.0 + 0 ENSG00000274015.1 lincRNA AL136038.5 2 OTTHUMG00000186885.1 +22325 chr14 ENSEMBL gene 63651296 63651499 204.0 - 0 ENSG00000200693.2 snoRNA RF00012 3 +22326 chr14 HAVANA gene 63684214 63728039 3312.0 - 0 ENSG00000126821.7 protein_coding SGPP1 2 OTTHUMG00000029080.3 +22327 chr14 HAVANA gene 63734697 63735923 1227.0 + 0 ENSG00000258778.2 processed_pseudogene AL161670.2 1 OTTHUMG00000171132.2 pseudo_consens +22328 chr14 ENSEMBL gene 63736444 63736505 62.0 + 0 ENSG00000252749.1 snRNA RNU7-116P 3 +22329 chr14 HAVANA gene 63762013 63762149 137.0 + 0 ENSG00000258411.2 processed_pseudogene AL161670.1 1 OTTHUMG00000171133.2 pseudo_consens +22330 chr14 HAVANA gene 63808546 63808732 187.0 + 0 ENSG00000270912.1 processed_pseudogene RPS28P1 1 OTTHUMG00000184599.1 pseudo_consens +22331 chr14 ENSEMBL gene 63848261 63848362 102.0 - 0 ENSG00000202182.1 misc_RNA RF00019 3 +22332 chr14 ENSEMBL gene 64095024 64095125 102.0 - 0 ENSG00000221537.1 miRNA MIR548H1 3 +22333 chr14 HAVANA gene 63852983 64226433 31374.0 + 0 ENSG00000054654.16 protein_coding SYNE2 1 OTTHUMG00000140349.5 +22334 chr14 HAVANA gene 64084232 64338112 9337.0 - 0 ENSG00000140009.18 protein_coding ESR2 1 OTTHUMG00000141306.4 ncRNA_host,overlapping_locus +22335 chr14 HAVANA gene 64329431 64338639 3351.0 - 0 ENSG00000214770.3 antisense AL161756.1 2 OTTHUMG00000171182.2 overlapping_locus +22336 chr14 HAVANA gene 64349677 64352284 2071.0 - 0 ENSG00000284664.1 lincRNA AL161756.3 2 OTTHUMG00000192273.1 +22337 chr14 HAVANA gene 64361392 64361637 246.0 + 0 ENSG00000271511.1 processed_pseudogene AL161756.2 1 OTTHUMG00000184590.1 pseudo_consens +22338 chr14 HAVANA gene 64341673 64387986 3162.0 - 0 ENSG00000234911.2 transcribed_unitary_pseudogene TEX21P 2 OTTHUMG00000154262.2 +22339 chr14 HAVANA gene 64440369 64442238 1870.0 - 0 ENSG00000272909.1 antisense AL122035.2 2 OTTHUMG00000185881.1 overlapping_locus +22340 chr14 HAVANA gene 64422935 64448557 550.0 - 0 ENSG00000258824.2 antisense AL122035.1 2 OTTHUMG00000171216.1 overlapping_locus +22341 chr14 HAVANA gene 64388031 64463457 9377.0 + 0 ENSG00000100714.15 protein_coding MTHFD1 1 OTTHUMG00000141309.6 +22342 chr14 HAVANA gene 64465499 64474503 7512.0 + 0 ENSG00000179841.8 protein_coding AKAP5 2 OTTHUMG00000029634.4 +22343 chr14 HAVANA gene 64449106 64505213 12229.0 - 0 ENSG00000089775.11 protein_coding ZBTB25 1 OTTHUMG00000141310.3 +22344 chr14 HAVANA gene 64503712 64533690 5283.0 + 0 ENSG00000126804.13 protein_coding ZBTB1 2 OTTHUMG00000171147.3 +22345 chr14 HAVANA gene 64535702 64535879 178.0 - 0 ENSG00000259160.1 processed_pseudogene AL049869.4 1 OTTHUMG00000171562.1 pseudo_consens,overlapping_locus +22346 chr14 HAVANA gene 64513952 64540368 1234.0 - 0 ENSG00000259116.2 antisense AL049869.3 2 OTTHUMG00000171561.2 overlapping_locus +22347 chr14 HAVANA gene 64535905 64546173 5777.0 + 0 ENSG00000126803.9 protein_coding HSPA2 2 OTTHUMG00000141311.4 retrogene +22348 chr14 HAVANA gene 64549902 64589380 3093.0 + 0 ENSG00000165807.7 protein_coding PPP1R36 2 OTTHUMG00000141316.3 +22349 chr14 HAVANA gene 64552694 64596536 432.0 - 0 ENSG00000259076.1 antisense AL049869.2 2 OTTHUMG00000171563.1 +22350 chr14 HAVANA gene 64600243 64601644 1402.0 - 0 ENSG00000259010.1 processed_pseudogene AL049869.1 1 OTTHUMG00000171564.1 pseudo_consens +22351 chr14 HAVANA gene 64704102 64750247 11910.0 + 0 ENSG00000126822.16 protein_coding PLEKHG3 1 OTTHUMG00000029671.11 +22352 chr14 ENSEMBL gene 64785626 64785686 61.0 - 0 ENSG00000284269.1 miRNA MIR7855 3 +22353 chr14 HAVANA gene 64746283 64879907 14796.0 - 0 ENSG00000070182.20 protein_coding SPTB 1 OTTHUMG00000171550.10 ncRNA_host +22354 chr14 ENSEMBL gene 64909488 64909780 293.0 - 0 ENSG00000252497.1 ribozyme RPPH1-2P 3 +22355 chr14 HAVANA gene 64939152 64942905 1499.0 - 0 ENSG00000176153.11 protein_coding GPX2 2 OTTHUMG00000171677.1 +22356 chr14 HAVANA gene 64914361 64944591 5404.0 + 0 ENSG00000258289.8 protein_coding CHURC1 1 OTTHUMG00000170218.5 overlapping_locus +22357 chr14 HAVANA gene 64945814 64973226 5015.0 - 0 ENSG00000139998.15 protein_coding RAB15 2 OTTHUMG00000142810.7 +22358 chr14 HAVANA gene 65003325 65003767 443.0 - 0 ENSG00000272158.1 antisense AL139022.2 2 OTTHUMG00000185569.1 +22359 chr14 ENSEMBL gene 65044688 65044769 82.0 + 0 ENSG00000266531.1 miRNA MIR4706 3 +22360 chr14 HAVANA gene 64914485 65061803 2076.0 + 0 ENSG00000125954.12 protein_coding CHURC1-FNTB 2 OTTHUMG00000170219.4 ncRNA_host,overlapping_locus +22361 chr14 HAVANA gene 64986720 65062652 3948.0 + 0 ENSG00000257365.7 protein_coding FNTB 1 OTTHUMG00000142811.5 ncRNA_host,overlapping_locus +22362 chr14 HAVANA gene 65082034 65094212 1377.0 + 0 ENSG00000259118.5 antisense AL139022.1 2 OTTHUMG00000171594.1 +22363 chr14 HAVANA gene 65006174 65102695 4430.0 - 0 ENSG00000125952.18 protein_coding MAX 1 OTTHUMG00000142809.10 +22364 chr14 ENSEMBL gene 65124352 65124542 191.0 - 0 ENSG00000222985.1 snRNA RNU2-14P 3 +22365 chr14 HAVANA gene 65212893 65222347 1442.0 - 0 ENSG00000255002.1 lincRNA LINC02324 2 OTTHUMG00000166151.1 +22366 chr14 HAVANA gene 65234515 65235101 587.0 - 0 ENSG00000258878.1 processed_pseudogene AL355076.3 2 OTTHUMG00000171167.1 +22367 chr14 HAVANA gene 65266638 65267690 483.0 - 0 ENSG00000258613.1 processed_pseudogene RPL21P7 1 OTTHUMG00000171169.1 pseudo_consens,overlapping_locus +22368 chr14 HAVANA gene 65268829 65269098 270.0 + 0 ENSG00000214759.3 processed_pseudogene AL355076.1 1 OTTHUMG00000157962.1 pseudo_consens +22369 chr14 HAVANA gene 65279267 65281166 1601.0 + 0 ENSG00000259078.2 processed_pseudogene PTBP1P 1 OTTHUMG00000171170.2 pseudo_consens +22370 chr14 HAVANA gene 65236480 65318790 1118.0 - 0 ENSG00000258760.1 lincRNA AL355076.2 1 OTTHUMG00000171168.1 overlapping_locus +22371 chr14 ENSEMBL gene 65335117 65335183 67.0 - 0 ENSG00000266740.1 miRNA MIR4708 3 +22372 chr14 HAVANA gene 65411170 65412690 1521.0 - 0 ENSG00000276116.2 antisense FUT8-AS1 2 OTTHUMG00000186893.2 +22373 chr14 HAVANA gene 65467807 65468341 535.0 - 0 ENSG00000180662.8 processed_pseudogene RPL21P8 1 OTTHUMG00000157964.1 pseudo_consens +22374 chr14 ENSEMBL gene 65471102 65471186 85.0 + 0 ENSG00000207781.1 miRNA MIR625 3 +22375 chr14 HAVANA gene 65528830 65529574 413.0 - 0 ENSG00000258980.1 processed_pseudogene EIF1AXP2 1 OTTHUMG00000171171.1 pseudo_consens +22376 chr14 HAVANA gene 65410592 65744121 6700.0 + 0 ENSG00000033170.16 protein_coding FUT8 1 OTTHUMG00000142818.4 ncRNA_host +22377 chr14 HAVANA gene 65879592 65881070 1479.0 - 0 ENSG00000258629.1 processed_pseudogene AL391261.1 1 OTTHUMG00000171174.1 pseudo_consens +22378 chr14 HAVANA gene 65900932 65901451 520.0 - 0 ENSG00000258960.1 processed_pseudogene AL391261.3 1 OTTHUMG00000171175.1 pseudo_consens +22379 chr14 HAVANA gene 65986967 65987447 481.0 - 0 ENSG00000277651.1 sense_intronic AL391261.4 2 OTTHUMG00000188632.1 +22380 chr14 HAVANA gene 65957297 66004523 773.0 - 0 ENSG00000258847.1 lincRNA AL391261.2 2 OTTHUMG00000171176.2 +22381 chr14 HAVANA gene 66012830 66013789 960.0 - 0 ENSG00000224861.1 processed_pseudogene YBX1P1 2 OTTHUMG00000171177.1 +22382 chr14 HAVANA gene 66111581 66125847 1214.0 + 0 ENSG00000258502.5 lincRNA LINC02290 2 OTTHUMG00000171178.1 +22383 chr14 ENSEMBL gene 66177527 66177635 109.0 - 0 ENSG00000200860.1 misc_RNA RF00019 3 +22384 chr14 HAVANA gene 66411704 66498677 2824.0 + 0 ENSG00000196553.15 protein_coding CCDC196 2 OTTHUMG00000029779.9 +22385 chr14 HAVANA gene 66212810 66509394 1797.0 - 0 ENSG00000258561.1 lincRNA AL359232.1 2 OTTHUMG00000171191.1 +22386 chr14 HAVANA gene 66760532 66761018 487.0 + 0 ENSG00000258796.1 processed_pseudogene AL133241.1 1 OTTHUMG00000171218.1 pseudo_consens,overlapping_locus +22387 chr14 HAVANA gene 66969038 66969816 514.0 - 0 ENSG00000258490.1 antisense AL049835.1 2 OTTHUMG00000171219.1 +22388 chr14 HAVANA gene 66507407 67181803 6007.0 + 0 ENSG00000171723.15 protein_coding GPHN 2 OTTHUMG00000029785.6 overlapping_locus +22389 chr14 HAVANA gene 67199062 67200327 1266.0 + 0 ENSG00000258988.1 processed_pseudogene AL135978.1 1 OTTHUMG00000171221.1 pseudo_consens,overlapping_locus +22390 chr14 HAVANA gene 67189393 67228550 4399.0 + 0 ENSG00000172717.16 protein_coding FAM71D 1 OTTHUMG00000142819.8 overlapping_locus +22391 chr14 HAVANA gene 67241109 67335819 8743.0 + 0 ENSG00000072415.8 protein_coding MPP5 2 OTTHUMG00000171243.3 +22392 chr14 ENSEMBL gene 67340068 67340176 109.0 + 0 ENSG00000199755.1 misc_RNA RF00019 3 +22393 chr14 HAVANA gene 67294371 67360265 4251.0 - 0 ENSG00000100554.11 protein_coding ATP6V1D 1 OTTHUMG00000171244.2 +22394 chr14 HAVANA gene 67359997 67386516 5651.0 + 0 ENSG00000134001.12 protein_coding EIF2S1 2 OTTHUMG00000029800.5 +22395 chr14 HAVANA gene 67386983 67412200 1603.0 - 0 ENSG00000100558.8 protein_coding PLEK2 1 OTTHUMG00000171247.3 +22396 chr14 ENSEMBL gene 67441855 67441930 76.0 - 0 ENSG00000265993.1 miRNA MIR5694 3 +22397 chr14 HAVANA gene 67447084 67533739 6377.0 - 0 ENSG00000198133.8 protein_coding TMEM229B 2 OTTHUMG00000171270.4 +22398 chr14 HAVANA gene 67533301 67589612 10817.0 + 0 ENSG00000054690.13 protein_coding PLEKHH1 2 OTTHUMG00000171272.3 +22399 chr14 HAVANA gene 67581955 67600287 2915.0 - 0 ENSG00000100564.8 protein_coding PIGH 1 OTTHUMG00000171806.3 +22400 chr14 HAVANA gene 67610986 67613864 619.0 + 0 ENSG00000259502.1 processed_pseudogene AL132640.1 1 OTTHUMG00000172131.2 pseudo_consens +22401 chr14 HAVANA gene 67614929 67616626 1698.0 + 0 ENSG00000259648.1 transcribed_processed_pseudogene AL132640.2 1 OTTHUMG00000172132.1 pseudo_consens +22402 chr14 ENSEMBL gene 67616903 67617084 177.0 + 0 ENSG00000281228.1 pseudogene AL132640.3 3 +22403 chr14 ENSEMBL gene 67617302 67617415 114.0 - 0 ENSG00000201529.1 misc_RNA RF00019 3 +22404 chr14 HAVANA gene 67619798 67651720 2418.0 + 0 ENSG00000081181.7 protein_coding ARG2 2 OTTHUMG00000171807.2 +22405 chr14 HAVANA gene 67652300 67652614 315.0 - 0 ENSG00000258626.2 processed_pseudogene COX7A2P1 1 OTTHUMG00000171755.2 pseudo_consens,overlapping_locus +22406 chr14 ENSEMBL gene 67657105 67657211 107.0 - 0 ENSG00000272253.1 rRNA_pseudogene RNA5SP386 3 +22407 chr14 HAVANA gene 67647075 67674831 5789.0 - 0 ENSG00000100568.10 protein_coding VTI1B 1 OTTHUMG00000171251.3 overlapping_locus +22408 chr14 HAVANA gene 67659820 67690367 804.0 - 0 ENSG00000258466.5 protein_coding AL049779.1 2 OTTHUMG00000171262.4 overlapping_locus +22409 chr14 HAVANA gene 67676801 67695814 5518.0 - 0 ENSG00000072042.12 protein_coding RDH11 1 OTTHUMG00000171196.6 overlapping_locus +22410 chr14 ENSEMBL gene 67705954 67706252 299.0 + 0 ENSG00000241542.3 misc_RNA RN7SL369P 3 +22411 chr14 HAVANA gene 67714545 67715204 474.0 + 0 ENSG00000258618.2 processed_pseudogene RPL21P9 1 OTTHUMG00000171273.3 pseudo_consens,overlapping_locus +22412 chr14 HAVANA gene 67701886 67734452 2356.0 + 0 ENSG00000139988.9 protein_coding RDH12 2 OTTHUMG00000170032.1 ncRNA_host,overlapping_locus +22413 chr14 HAVANA gene 67735195 67735350 156.0 + 0 ENSG00000271697.1 processed_pseudogene AL049779.3 1 OTTHUMG00000184587.1 pseudo_consens +22414 chr14 ENSEMBL gene 67751228 67751544 317.0 - 0 ENSG00000239820.3 misc_RNA RN7SL213P 3 +22415 chr14 HAVANA gene 67799004 67799609 606.0 + 0 ENSG00000258759.1 processed_pseudogene AL049779.2 1 OTTHUMG00000171283.1 pseudo_consens +22416 chr14 HAVANA gene 67727374 67816590 15706.0 - 0 ENSG00000072121.15 protein_coding ZFYVE26 2 OTTHUMG00000171274.4 ncRNA_host +22417 chr14 HAVANA gene 68113706 68114144 439.0 - 0 ENSG00000274666.1 unprocessed_pseudogene AL133370.2 2 OTTHUMG00000187838.1 +22418 chr14 HAVANA gene 68125004 68130196 537.0 - 0 ENSG00000258837.1 antisense AL133370.1 2 OTTHUMG00000171756.1 +22419 chr14 ENSEMBL gene 68149617 68149908 292.0 - 0 ENSG00000244677.3 misc_RNA RN7SL706P 3 +22420 chr14 ENSEMBL gene 68236243 68236539 297.0 - 0 ENSG00000243546.3 misc_RNA RN7SL108P 3 +22421 chr14 HAVANA gene 68338728 68339528 801.0 - 0 ENSG00000240210.3 processed_pseudogene AL122013.1 1 OTTHUMG00000157967.1 pseudo_consens +22422 chr14 HAVANA gene 68421698 68422196 499.0 - 0 ENSG00000258477.1 processed_pseudogene PPIAP6 1 OTTHUMG00000171757.1 pseudo_consens +22423 chr14 HAVANA gene 68627166 68628445 279.0 - 0 ENSG00000259038.1 antisense AL121820.2 2 OTTHUMG00000171758.1 +22424 chr14 HAVANA gene 68683411 68685565 461.0 - 0 ENSG00000258623.1 antisense AL121820.1 2 OTTHUMG00000171759.1 +22425 chr14 HAVANA gene 68693090 68693583 494.0 + 0 ENSG00000242941.1 processed_pseudogene RPL12P7 1 OTTHUMG00000157970.2 pseudo_consens,overlapping_locus +22426 chr14 HAVANA gene 67819779 68730218 7477.0 + 0 ENSG00000182185.18 protein_coding RAD51B 1 OTTHUMG00000157530.6 overlapping_locus +22427 chr14 ENSEMBL gene 68735922 68736028 107.0 - 0 ENSG00000207089.1 snRNA RNU6-921P 3 +22428 chr14 HAVANA gene 68787660 68796253 5160.0 - 0 ENSG00000185650.9 protein_coding ZFP36L1 1 OTTHUMG00000171385.3 +22429 chr14 HAVANA gene 68861762 68862525 447.0 + 0 ENSG00000270975.1 unprocessed_pseudogene MAGOH3P 1 OTTHUMG00000184601.1 pseudo_consens +22430 chr14 HAVANA gene 68867857 68869951 1130.0 - 0 ENSG00000258565.1 unprocessed_pseudogene BLZF2P 1 OTTHUMG00000171760.1 pseudo_consens +22431 chr14 HAVANA gene 68887785 68888084 300.0 - 0 ENSG00000258967.1 processed_pseudogene HMGN1P3 1 OTTHUMG00000171667.1 pseudo_consens,overlapping_locus +22432 chr14 HAVANA gene 68936602 68936864 263.0 + 0 ENSG00000258531.2 processed_pseudogene BANF1P1 1 OTTHUMG00000171668.2 pseudo_consens +22433 chr14 HAVANA gene 68874143 68979440 10626.0 - 0 ENSG00000072110.13 protein_coding ACTN1 1 OTTHUMG00000171386.6 overlapping_locus +22434 chr14 HAVANA gene 68979682 68987463 936.0 + 0 ENSG00000259062.2 antisense ACTN1-AS1 2 OTTHUMG00000171698.2 +22435 chr14 HAVANA gene 69023150 69023308 159.0 - 0 ENSG00000242293.1 processed_pseudogene RPS29P1 1 OTTHUMG00000157974.2 pseudo_consens +22436 chr14 HAVANA gene 69083398 69085389 1992.0 + 0 ENSG00000259165.1 processed_pseudogene DDX18P1 1 OTTHUMG00000171761.1 pseudo_consens +22437 chr14 ENSEMBL gene 69143852 69143953 102.0 - 0 ENSG00000206768.1 misc_RNA RF00019 3 +22438 chr14 HAVANA gene 69050881 69153150 8295.0 - 0 ENSG00000139990.17 protein_coding DCAF5 1 OTTHUMG00000171699.2 ncRNA_host +22439 chr14 HAVANA gene 69154311 69154804 494.0 + 0 ENSG00000276063.1 lincRNA AL391262.1 2 OTTHUMG00000186903.1 +22440 chr14 HAVANA gene 69183020 69214092 2364.0 - 0 ENSG00000258957.1 lincRNA AL359317.2 2 OTTHUMG00000171321.1 +22441 chr14 HAVANA gene 69191511 69244020 6263.0 + 0 ENSG00000081177.18 protein_coding EXD2 1 OTTHUMG00000154496.3 +22442 chr14 HAVANA gene 69239166 69260567 578.0 - 0 ENSG00000258520.1 lincRNA AL359317.1 2 OTTHUMG00000171322.1 +22443 chr14 HAVANA gene 69259277 69357033 10802.0 + 0 ENSG00000100626.16 protein_coding GALNT16 2 OTTHUMG00000171231.5 overlapping_locus +22444 chr14 HAVANA gene 69357010 69359308 2299.0 + 0 ENSG00000280073.1 TEC AL157996.1 2 OTTHUMG00000172967.1 overlapping_locus +22445 chr14 HAVANA gene 69380123 69398627 1446.0 - 0 ENSG00000100632.10 protein_coding ERH 2 OTTHUMG00000171323.2 +22446 chr14 HAVANA gene 69398015 69462388 7136.0 + 0 ENSG00000029364.11 protein_coding SLC39A9 1 OTTHUMG00000171232.5 +22447 chr14 HAVANA gene 69484692 69531551 8097.0 + 0 ENSG00000175985.9 protein_coding PLEKHD1 2 OTTHUMG00000171233.3 +22448 chr14 HAVANA gene 69561019 69561470 452.0 - 0 ENSG00000244237.1 processed_pseudogene AL133445.1 1 OTTHUMG00000157979.2 pseudo_consens +22449 chr14 HAVANA gene 69569816 69574837 4131.0 - 0 ENSG00000267909.2 protein_coding CCDC177 2 OTTHUMG00000187379.1 +22450 chr14 HAVANA gene 69617122 69617648 527.0 + 0 ENSG00000273797.1 sense_intronic AL133445.2 2 OTTHUMG00000188631.1 +22451 chr14 HAVANA gene 69611596 69715142 5830.0 + 0 ENSG00000100647.7 protein_coding SUSD6 2 OTTHUMG00000171234.2 +22452 chr14 HAVANA gene 69726900 69772005 5357.0 + 0 ENSG00000100650.15 protein_coding SRSF5 1 OTTHUMG00000171235.5 +22453 chr14 HAVANA gene 69775417 69797289 2049.0 - 0 ENSG00000100652.4 protein_coding SLC10A1 2 OTTHUMG00000171236.1 +22454 chr14 ENSEMBL gene 69804203 69804331 129.0 - 0 ENSG00000221060.1 snoRNA RF00614 3 +22455 chr14 HAVANA gene 69885340 69886140 801.0 - 0 ENSG00000242071.3 processed_pseudogene RPL7AP6 2 OTTHUMG00000157981.1 +22456 chr14 HAVANA gene 69854131 70032366 4369.0 + 0 ENSG00000198732.10 protein_coding SMOC1 2 OTTHUMG00000171237.1 +22457 chr14 HAVANA gene 70044217 70189070 8444.0 - 0 ENSG00000100678.18 protein_coding SLC8A3 1 OTTHUMG00000152342.3 +22458 chr14 HAVANA gene 70187123 70230187 1109.0 + 0 ENSG00000258422.5 antisense AL160191.1 2 OTTHUMG00000171324.1 +22459 chr14 HAVANA gene 70230224 70232426 2203.0 + 0 ENSG00000274330.1 unprocessed_pseudogene AL160191.3 2 OTTHUMG00000188125.1 +22460 chr14 HAVANA gene 70234495 70235095 601.0 + 0 ENSG00000270610.1 processed_pseudogene AL160191.2 1 OTTHUMG00000184428.1 pseudo_consens +22461 chr14 HAVANA gene 70245491 70247801 2311.0 - 0 ENSG00000235812.4 transcribed_processed_pseudogene ADAM21P1 1 OTTHUMG00000166565.3 pseudo_consens +22462 chr14 HAVANA gene 70275296 70291859 448.0 + 0 ENSG00000259033.1 lincRNA AL356804.1 2 OTTHUMG00000171325.1 +22463 chr14 HAVANA gene 70325081 70359731 1863.0 - 0 ENSG00000133983.14 protein_coding COX16 2 OTTHUMG00000171238.3 overlapping_locus +22464 chr14 ENSEMBL gene 70360892 70361088 197.0 + 0 ENSG00000222640.1 snRNA RNU2-51P 3 +22465 chr14 HAVANA gene 70366496 70417061 7031.0 - 0 ENSG00000213463.4 protein_coding SYNJ2BP 2 OTTHUMG00000171240.2 overlapping_locus +22466 chr14 HAVANA gene 70326064 70417074 1404.0 - 0 ENSG00000258644.5 protein_coding SYNJ2BP-COX16 2 OTTHUMG00000171239.3 overlapping_locus +22467 chr14 HAVANA gene 70452157 70459899 2658.0 + 0 ENSG00000139985.6 protein_coding ADAM21 2 OTTHUMG00000171328.3 retrogene +22468 chr14 HAVANA gene 70453541 70483775 3733.0 - 0 ENSG00000259158.4 transcribed_unprocessed_pseudogene ADAM20P1 2 OTTHUMG00000171329.4 overlapping_locus +22469 chr14 ENSEMBL gene 70496107 70496210 104.0 + 0 ENSG00000252263.1 snRNA RNU6-659P 3 +22470 chr14 HAVANA gene 70522358 70535015 2795.0 - 0 ENSG00000134007.3 protein_coding ADAM20 2 OTTHUMG00000167548.2 retrogene +22471 chr14 HAVANA gene 70425812 70547464 565.0 - 0 ENSG00000257759.2 lincRNA AL357153.2 2 OTTHUMG00000171327.1 overlapping_locus +22472 chr14 HAVANA gene 70556206 70557478 1016.0 + 0 ENSG00000274397.1 unprocessed_pseudogene AL357153.4 2 OTTHUMG00000187841.1 +22473 chr14 HAVANA gene 70594552 70595770 1219.0 + 0 ENSG00000258951.1 processed_pseudogene KRT18P7 1 OTTHUMG00000171331.1 pseudo_consens +22474 chr14 HAVANA gene 70581257 70600690 4219.0 - 0 ENSG00000133997.11 protein_coding MED6 1 OTTHUMG00000171252.2 overlapping_locus +22475 chr14 ENSEMBL gene 70610086 70610379 294.0 + 0 ENSG00000240837.3 misc_RNA RN7SL77P 3 +22476 chr14 HAVANA gene 70593314 70641204 611.0 - 0 ENSG00000259115.1 lincRNA AL357153.3 2 OTTHUMG00000171330.1 overlapping_locus +22477 chr14 HAVANA gene 70608798 70641298 2941.0 - 0 ENSG00000245466.1 lincRNA AL357153.1 2 OTTHUMG00000171332.1 overlapping_locus +22478 chr14 HAVANA gene 70641787 70675360 5217.0 + 0 ENSG00000133985.2 protein_coding TTC9 2 OTTHUMG00000172133.1 +22479 chr14 HAVANA gene 70698698 70712153 602.0 + 0 ENSG00000258689.1 lincRNA LINC01269 2 OTTHUMG00000171248.1 +22480 chr14 HAVANA gene 70722526 70809534 12386.0 - 0 ENSG00000006432.15 protein_coding MAP3K9 1 OTTHUMG00000171249.3 +22481 chr14 HAVANA gene 70810205 70815403 716.0 + 0 ENSG00000259153.1 lincRNA AC004816.1 2 OTTHUMG00000171250.1 +22482 chr14 HAVANA gene 70822004 70823984 284.0 + 0 ENSG00000275630.1 lincRNA AC004816.2 2 OTTHUMG00000186907.1 +22483 chr14 HAVANA gene 70858844 70859429 586.0 - 0 ENSG00000258431.1 processed_pseudogene AC004825.1 1 OTTHUMG00000171284.3 pseudo_consens +22484 chr14 HAVANA gene 70906657 70907111 455.0 - 0 ENSG00000274818.1 lincRNA AC004825.2 2 OTTHUMG00000186911.2 +22485 chr14 HAVANA gene 71031686 71031970 285.0 - 0 ENSG00000258930.1 transcribed_processed_pseudogene AC005230.1 1 OTTHUMG00000171286.1 pseudo_consens +22486 chr14 HAVANA gene 71044375 71044640 266.0 - 0 ENSG00000258966.1 transcribed_processed_pseudogene GTF3AP2 2 OTTHUMG00000171287.2 +22487 chr14 HAVANA gene 71085482 71085833 352.0 - 0 ENSG00000258571.1 processed_pseudogene PTTG4P 2 OTTHUMG00000171288.2 +22488 chr14 HAVANA gene 70907405 71115382 16715.0 + 0 ENSG00000100731.15 protein_coding PCNX1 2 OTTHUMG00000171242.7 +22489 chr14 HAVANA gene 71141125 71143253 2129.0 - 0 ENSG00000269927.1 lincRNA AC004817.3 2 OTTHUMG00000172968.1 +22490 chr14 HAVANA gene 71181456 71182106 651.0 + 0 ENSG00000259907.1 lincRNA AC004817.2 2 OTTHUMG00000172756.1 +22491 chr14 HAVANA gene 71212633 71218216 721.0 + 0 ENSG00000258517.1 lincRNA AC004817.1 2 OTTHUMG00000171281.1 +22492 chr14 HAVANA gene 71219100 71222724 3625.0 + 0 ENSG00000269945.1 lincRNA AC004817.4 2 OTTHUMG00000183951.1 +22493 chr14 HAVANA gene 71292729 71321814 973.0 - 0 ENSG00000259146.3 antisense AC005476.2 2 OTTHUMG00000171342.2 +22494 chr14 HAVANA gene 71330342 71330738 397.0 - 0 ENSG00000259079.1 processed_pseudogene AC005476.1 1 OTTHUMG00000171343.1 pseudo_consens +22495 chr14 ENSEMBL gene 71398337 71398407 71.0 + 0 ENSG00000207444.1 snoRNA SNORD56B 3 +22496 chr14 ENSEMBL gene 71448689 71448958 270.0 + 0 ENSG00000242330.3 misc_RNA RN7SL683P 3 +22497 chr14 HAVANA gene 71586269 71590354 3093.0 - 0 ENSG00000285612.1 antisense AC004974.1 2 OTTHUMG00000192934.1 +22498 chr14 HAVANA gene 71734927 71739794 832.0 - 0 ENSG00000285518.1 antisense AC004900.1 2 OTTHUMG00000193064.1 +22499 chr14 HAVANA gene 71320449 71741229 12412.0 + 0 ENSG00000197555.9 protein_coding SIPA1L1 1 OTTHUMG00000171282.6 ncRNA_host +22500 chr14 HAVANA gene 71848606 71908430 397.0 + 0 ENSG00000266869.1 lincRNA AC005993.1 2 OTTHUMG00000179238.1 +22501 chr14 ENSEMBL gene 72022407 72022516 110.0 - 0 ENSG00000200298.1 misc_RNA RF00019 3 +22502 chr14 ENSEMBL gene 72516820 72516898 79.0 + 0 ENSG00000273830.1 miRNA MIR7843 3 +22503 chr14 HAVANA gene 71932439 72566529 8937.0 + 0 ENSG00000182732.17 protein_coding RGS6 1 OTTHUMG00000171340.5 ncRNA_host +22504 chr14 HAVANA gene 72552580 72595125 654.0 - 0 ENSG00000258871.1 lincRNA AC004828.1 2 OTTHUMG00000171341.1 +22505 chr14 HAVANA gene 72701762 72704280 2159.0 + 0 ENSG00000285936.1 antisense AL392024.1 2 OTTHUMG00000192806.1 +22506 chr14 ENSEMBL gene 72853224 72853331 108.0 - 0 ENSG00000206751.1 misc_RNA RF00019 3 +22507 chr14 HAVANA gene 72619296 72894116 6889.0 - 0 ENSG00000205683.11 protein_coding DPF3 1 OTTHUMG00000171364.2 ncRNA_host +22508 chr14 HAVANA gene 72929612 72929930 319.0 - 0 ENSG00000176043.5 processed_pseudogene AC007160.1 1 OTTHUMG00000157983.1 pseudo_consens +22509 chr14 HAVANA gene 72926332 72959703 5581.0 + 0 ENSG00000119599.16 protein_coding DCAF4 1 OTTHUMG00000160542.3 +22510 chr14 HAVANA gene 72960595 72961993 289.0 + 0 ENSG00000259015.1 processed_pseudogene AL442663.4 2 OTTHUMG00000171422.2 +22511 chr14 HAVANA gene 72963645 72964008 364.0 - 0 ENSG00000239544.1 processed_pseudogene AL442663.1 1 OTTHUMG00000157987.1 pseudo_consens +22512 chr14 HAVANA gene 72969451 73027212 5306.0 - 0 ENSG00000165861.13 protein_coding ZFYVE1 2 OTTHUMG00000171365.2 +22513 chr14 ENSEMBL gene 73040619 73040914 296.0 - 0 ENSG00000241487.3 misc_RNA RN7SL586P 3 +22514 chr14 HAVANA gene 73057925 73059415 1000.0 - 0 ENSG00000258813.2 antisense AL442663.3 2 OTTHUMG00000171423.2 +22515 chr14 HAVANA gene 73068108 73068618 511.0 - 0 ENSG00000258448.1 processed_pseudogene AL442663.2 1 OTTHUMG00000171424.1 pseudo_consens +22516 chr14 HAVANA gene 73058436 73123898 11859.0 + 0 ENSG00000119707.13 protein_coding RBM25 2 OTTHUMG00000167540.2 +22517 chr14 HAVANA gene 73189763 73190004 242.0 + 0 ENSG00000259109.1 processed_pseudogene AC004858.1 1 OTTHUMG00000171549.1 pseudo_consens,overlapping_locus +22518 chr14 HAVANA gene 73136418 73223691 9947.0 + 0 ENSG00000080815.18 protein_coding PSEN1 1 OTTHUMG00000141279.17 overlapping_locus +22519 chr14 HAVANA gene 73242651 73245979 3050.0 - 0 ENSG00000258376.2 antisense AC004846.1 2 OTTHUMG00000171434.2 +22520 chr14 ENSEMBL gene 73246818 73246880 63.0 - 0 ENSG00000252839.1 snRNA RNU6-419P 3 +22521 chr14 HAVANA gene 73272182 73274081 777.0 - 0 ENSG00000258944.1 antisense AC004846.2 2 OTTHUMG00000171435.1 +22522 chr14 HAVANA gene 73237497 73274640 7699.0 + 0 ENSG00000100767.16 protein_coding PAPLN 2 OTTHUMG00000171366.5 +22523 chr14 HAVANA gene 73275107 73458617 9546.0 - 0 ENSG00000133961.20 protein_coding NUMB 2 OTTHUMG00000171436.14 overlapping_locus +22524 chr14 HAVANA gene 73366897 73463642 818.0 - 0 ENSG00000285006.1 processed_transcript AC005280.3 2 OTTHUMG00000192428.1 overlapping_locus +22525 chr14 HAVANA gene 73458850 73466167 1412.0 - 0 ENSG00000284930.1 lincRNA AC005280.2 2 OTTHUMG00000192429.1 overlapping_locus +22526 chr14 HAVANA gene 73462423 73477175 680.0 + 0 ENSG00000251393.3 processed_transcript AC005280.1 2 OTTHUMG00000171606.2 +22527 chr14 HAVANA gene 73490964 73493392 2429.0 + 0 ENSG00000170468.7 protein_coding RIOX1 2 OTTHUMG00000166530.5 +22528 chr14 HAVANA gene 73517233 73520648 937.0 - 0 ENSG00000258443.1 sense_intronic AC005225.1 2 OTTHUMG00000171675.1 overlapping_locus +22529 chr14 HAVANA gene 73522878 73530610 519.0 + 0 ENSG00000258695.2 antisense AC005225.3 2 OTTHUMG00000171603.2 +22530 chr14 HAVANA gene 73539221 73539781 561.0 - 0 ENSG00000258408.1 transcribed_processed_pseudogene NT5CP2 1 OTTHUMG00000171604.3 pseudo_consens,overlapping_locus +22531 chr14 HAVANA gene 73537114 73543794 1713.0 + 0 ENSG00000184227.7 protein_coding ACOT1 2 OTTHUMG00000171607.1 +22532 chr14 HAVANA gene 73478484 73558947 4209.0 - 0 ENSG00000187105.8 protein_coding HEATR4 2 OTTHUMG00000171602.6 overlapping_locus +22533 chr14 HAVANA gene 73571159 73571667 509.0 - 0 ENSG00000258524.1 processed_pseudogene NT5CP1 1 OTTHUMG00000171605.1 pseudo_consens +22534 chr14 HAVANA gene 73567620 73575658 2393.0 + 0 ENSG00000119673.14 protein_coding ACOT2 1 OTTHUMG00000171608.4 +22535 chr14 HAVANA gene 73580694 73582918 2225.0 + 0 ENSG00000279026.1 TEC AC005225.4 2 OTTHUMG00000172970.1 +22536 chr14 HAVANA gene 73591706 73596496 2362.0 + 0 ENSG00000177465.4 protein_coding ACOT4 2 OTTHUMG00000169485.2 +22537 chr14 HAVANA gene 73610945 73619888 1183.0 + 0 ENSG00000205669.3 protein_coding ACOT6 2 OTTHUMG00000171609.3 +22538 chr14 HAVANA gene 73631475 73632019 545.0 + 0 ENSG00000258972.1 processed_pseudogene NDUFB8P1 1 OTTHUMG00000171641.1 pseudo_consens +22539 chr14 HAVANA gene 73616700 73633941 919.0 - 0 ENSG00000258603.3 antisense AC005225.2 2 OTTHUMG00000171669.3 +22540 chr14 ENSEMBL gene 73659564 73659660 97.0 - 0 ENSG00000251907.1 snRNA RNU6-240P 3 +22541 chr14 HAVANA gene 73698103 73700351 693.0 - 0 ENSG00000258660.1 antisense AC006146.1 2 OTTHUMG00000171670.1 +22542 chr14 HAVANA gene 73644875 73703732 8884.0 + 0 ENSG00000119661.14 protein_coding DNAL1 2 OTTHUMG00000171642.7 +22543 chr14 HAVANA gene 73711783 73714372 2590.0 - 0 ENSG00000176903.4 protein_coding PNMA1 2 OTTHUMG00000169183.1 +22544 chr14 ENSEMBL gene 73758747 73758819 73.0 + 0 ENSG00000264741.1 miRNA MIR4505 3 +22545 chr14 HAVANA gene 73715122 73790285 13484.0 - 0 ENSG00000156030.13 protein_coding ELMSAN1 1 OTTHUMG00000150359.3 +22546 chr14 HAVANA gene 73787360 73803270 688.0 + 0 ENSG00000259065.1 antisense AC005520.2 2 OTTHUMG00000171253.1 +22547 chr14 HAVANA gene 73822559 73830135 1174.0 - 0 ENSG00000258586.1 lincRNA LINC02274 2 OTTHUMG00000171254.1 +22548 chr14 HAVANA gene 73840520 73840609 90.0 - 0 ENSG00000270576.1 processed_pseudogene AC005520.4 1 OTTHUMG00000184539.1 pseudo_consens +22549 chr14 ENSEMBL gene 73858061 73858165 105.0 - 0 ENSG00000223300.1 misc_RNA RF00019 3 +22550 chr14 HAVANA gene 73873689 73885555 2137.0 - 0 ENSG00000273711.2 antisense AC005520.5 2 OTTHUMG00000186965.2 +22551 chr14 HAVANA gene 73851844 73886827 8072.0 + 0 ENSG00000140043.11 protein_coding PTGR2 2 OTTHUMG00000171255.3 overlapping_locus +22552 chr14 HAVANA gene 73905267 73905636 370.0 + 0 ENSG00000270140.1 sense_intronic AC005520.3 2 OTTHUMG00000184057.1 overlapping_locus +22553 chr14 ENSEMBL gene 73906316 73906427 112.0 - 0 ENSG00000199472.1 misc_RNA RF00019 3 +22554 chr14 HAVANA gene 73851971 73932278 3695.0 + 0 ENSG00000258653.3 protein_coding AC005520.1 2 OTTHUMG00000171256.2 overlapping_locus +22555 chr14 HAVANA gene 73886617 73932511 6486.0 + 0 ENSG00000119725.18 protein_coding ZNF410 1 OTTHUMG00000171257.4 overlapping_locus +22556 chr14 HAVANA gene 73896164 73938114 3953.0 - 0 ENSG00000258891.1 antisense AC005480.1 2 OTTHUMG00000171258.1 ncRNA_host,overlapping_locus +22557 chr14 HAVANA gene 73931501 73950414 5056.0 - 0 ENSG00000156050.8 protein_coding FAM161B 2 OTTHUMG00000171259.1 overlapping_locus +22558 chr14 HAVANA gene 73949926 73963670 6686.0 + 0 ENSG00000119723.16 protein_coding COQ6 1 OTTHUMG00000171260.3 +22559 chr14 HAVANA gene 74003396 74003470 75.0 + 0 ENSG00000279461.2 processed_pseudogene AC005480.2 2 OTTHUMG00000192047.1 +22560 chr14 HAVANA gene 73958010 74019399 10379.0 - 0 ENSG00000187097.12 protein_coding ENTPD5 1 OTTHUMG00000171201.3 +22561 chr14 HAVANA gene 74019353 74082863 4620.0 + 0 ENSG00000119636.15 protein_coding BBOF1 2 OTTHUMG00000171202.5 overlapping_locus +22562 chr14 HAVANA gene 74056850 74084493 6680.0 - 0 ENSG00000119711.12 protein_coding ALDH6A1 2 OTTHUMG00000171203.1 +22563 chr14 ENSEMBL gene 74174456 74174753 298.0 + 0 ENSG00000239910.3 misc_RNA RN7SL530P 3 +22564 chr14 HAVANA gene 74192589 74192823 235.0 + 0 ENSG00000258513.1 transcribed_processed_pseudogene AC006349.1 1 OTTHUMG00000171205.1 pseudo_consens,overlapping_locus +22565 chr14 HAVANA gene 74084796 74201235 3692.0 + 0 ENSG00000205659.10 protein_coding LIN52 2 OTTHUMG00000171204.3 ncRNA_host,overlapping_locus +22566 chr14 HAVANA gene 74239472 74262738 2995.0 + 0 ENSG00000119614.2 protein_coding VSX2 2 OTTHUMG00000171206.1 +22567 chr14 HAVANA gene 74289127 74294425 1367.0 - 0 ENSG00000258559.2 sense_overlapping AC005519.1 2 OTTHUMG00000149960.4 overlapping_locus +22568 chr14 HAVANA gene 74285423 74303056 8769.0 - 0 ENSG00000119688.20 protein_coding ABCD4 2 OTTHUMG00000171207.1 overlapping_locus +22569 chr14 HAVANA gene 74305425 74306527 297.0 + 0 ENSG00000258737.2 processed_pseudogene SUB1P2 1 OTTHUMG00000171209.2 pseudo_consens,overlapping_locus +22570 chr14 HAVANA gene 74303069 74360008 3736.0 + 0 ENSG00000133980.4 protein_coding VRTN 2 OTTHUMG00000171208.2 overlapping_locus +22571 chr14 HAVANA gene 74377818 74378418 601.0 - 0 ENSG00000177776.8 processed_pseudogene RPS2P2 1 OTTHUMG00000157990.2 pseudo_consens +22572 chr14 HAVANA gene 74405893 74426102 2612.0 - 0 ENSG00000183379.8 protein_coding SYNDIG1L 2 OTTHUMG00000171210.3 +22573 chr14 HAVANA gene 74471930 74472360 431.0 - 0 ENSG00000270000.1 lincRNA AC005479.2 2 OTTHUMG00000184116.1 +22574 chr14 HAVANA gene 74474007 74474864 589.0 - 0 ENSG00000259005.1 lincRNA AC005479.1 2 OTTHUMG00000171211.1 +22575 chr14 ENSEMBL gene 74480133 74480204 72.0 - 0 ENSG00000283944.1 miRNA MIR4709 3 +22576 chr14 HAVANA gene 74482985 74483435 451.0 + 0 ENSG00000258769.1 processed_pseudogene RAP1AP 1 OTTHUMG00000171213.1 pseudo_consens +22577 chr14 HAVANA gene 74476192 74494177 2749.0 - 0 ENSG00000119655.10 protein_coding NPC2 1 OTTHUMG00000171212.2 ncRNA_host +22578 chr14 HAVANA gene 74493720 74497106 3061.0 + 0 ENSG00000165898.13 protein_coding ISCA2 1 OTTHUMG00000171214.1 +22579 chr14 HAVANA gene 74552181 74560048 518.0 + 0 ENSG00000258425.1 lincRNA AC013451.1 2 OTTHUMG00000171477.1 +22580 chr14 HAVANA gene 74498170 74612378 9091.0 - 0 ENSG00000119681.11 protein_coding LTBP2 1 OTTHUMG00000171476.3 +22581 chr14 HAVANA gene 74614693 74616647 717.0 - 0 ENSG00000258976.1 lincRNA AC013451.2 2 OTTHUMG00000171478.1 +22582 chr14 HAVANA gene 74658049 74658590 542.0 + 0 ENSG00000258439.1 processed_pseudogene AC007956.1 1 OTTHUMG00000171479.1 pseudo_consens +22583 chr14 ENSEMBL gene 74711936 74712045 110.0 + 0 ENSG00000222604.2 snoRNA RF00409 3 +22584 chr14 HAVANA gene 74653437 74713115 7308.0 - 0 ENSG00000119682.16 protein_coding AREL1 1 OTTHUMG00000154499.3 +22585 chr14 HAVANA gene 74713144 74738620 4747.0 + 0 ENSG00000119616.11 protein_coding FCF1 2 OTTHUMG00000171480.3 +22586 chr14 HAVANA gene 74763366 74859435 14876.0 + 0 ENSG00000119596.17 protein_coding YLPM1 1 OTTHUMG00000172503.4 +22587 chr14 HAVANA gene 74852871 74871940 4566.0 - 0 ENSG00000119608.12 protein_coding PROX2 1 OTTHUMG00000171481.7 +22588 chr14 HAVANA gene 74873684 74874254 571.0 + 0 ENSG00000258587.1 processed_pseudogene AC006530.1 1 OTTHUMG00000171482.1 pseudo_consens +22589 chr14 HAVANA gene 74881891 74903745 4550.0 + 0 ENSG00000119689.14 protein_coding DLST 2 OTTHUMG00000171483.2 +22590 chr14 HAVANA gene 74903954 74923396 7617.0 - 0 ENSG00000198208.11 protein_coding RPS6KL1 1 OTTHUMG00000171484.5 +22591 chr14 HAVANA gene 74941834 74955784 5962.0 - 0 ENSG00000119630.13 protein_coding PGF 2 OTTHUMG00000171496.3 +22592 chr14 HAVANA gene 75004719 75008481 489.0 - 0 ENSG00000258646.1 antisense AL049780.1 2 OTTHUMG00000171765.1 +22593 chr14 HAVANA gene 75002911 75012366 5446.0 + 0 ENSG00000119718.10 protein_coding EIF2B2 1 OTTHUMG00000171764.3 +22594 chr14 HAVANA gene 75011269 75012851 1583.0 - 0 ENSG00000279594.1 TEC AL049780.3 2 OTTHUMG00000172971.1 +22595 chr14 ENSEMBL gene 75020761 75020867 107.0 + 0 ENSG00000206924.1 snRNA RNU6-689P 3 +22596 chr14 HAVANA gene 75013764 75051532 8363.0 - 0 ENSG00000119684.15 protein_coding MLH3 1 OTTHUMG00000171766.5 +22597 chr14 HAVANA gene 75053221 75069483 1841.0 - 0 ENSG00000119640.8 protein_coding ACYP1 1 OTTHUMG00000171767.1 +22598 chr14 HAVANA gene 75064170 75079987 4812.0 + 0 ENSG00000119703.13 protein_coding ZC2HC1C 1 OTTHUMG00000167439.6 +22599 chr14 HAVANA gene 75116426 75116600 175.0 - 0 ENSG00000258978.1 processed_pseudogene HIF1AP1 2 OTTHUMG00000171769.1 overlapping_locus +22600 chr14 HAVANA gene 75079353 75127344 10787.0 - 0 ENSG00000119638.12 protein_coding NEK9 1 OTTHUMG00000171768.3 overlapping_locus +22601 chr14 HAVANA gene 75127153 75136930 367.0 + 0 ENSG00000259138.1 antisense AL049780.2 2 OTTHUMG00000171770.1 +22602 chr14 HAVANA gene 75131470 75176631 4974.0 - 0 ENSG00000170348.8 protein_coding TMED10 2 OTTHUMG00000171771.2 +22603 chr14 HAVANA gene 75176929 75177418 490.0 + 0 ENSG00000273565.1 lincRNA AL691403.2 2 OTTHUMG00000186997.1 +22604 chr14 ENSEMBL gene 75202081 75202169 89.0 - 0 ENSG00000252013.1 snRNA RNU4ATAC14P 3 +22605 chr14 HAVANA gene 75238616 75269283 678.0 - 0 ENSG00000258740.1 lincRNA AL691403.1 1 OTTHUMG00000171772.1 +22606 chr14 ENSEMBL gene 75270700 75270780 81.0 - 0 ENSG00000283519.1 snRNA RF00004 3 +22607 chr14 HAVANA gene 75259411 75271950 874.0 + 0 ENSG00000258820.5 antisense AF111167.1 2 OTTHUMG00000171773.1 +22608 chr14 HAVANA gene 75278774 75282230 3238.0 + 0 ENSG00000170345.9 protein_coding FOS 1 OTTHUMG00000171774.3 +22609 chr14 HAVANA gene 75292131 75292495 365.0 - 0 ENSG00000119660.4 processed_pseudogene DPPA5P4 2 OTTHUMG00000171866.2 +22610 chr14 HAVANA gene 75294404 75296638 718.0 + 0 ENSG00000259687.1 lincRNA LINC01220 2 OTTHUMG00000171867.1 +22611 chr14 HAVANA gene 75423683 75427741 4059.0 - 0 ENSG00000259319.1 antisense AF111167.2 2 OTTHUMG00000171868.1 +22612 chr14 HAVANA gene 75427716 75474111 6235.0 + 0 ENSG00000140044.12 protein_coding JDP2 2 OTTHUMG00000171869.2 +22613 chr14 HAVANA gene 75522425 75547015 980.0 + 0 ENSG00000156127.6 protein_coding BATF 2 OTTHUMG00000171486.1 +22614 chr14 HAVANA gene 75574888 75579588 2159.0 - 0 ENSG00000224721.1 antisense AC007182.1 2 OTTHUMG00000148657.1 +22615 chr14 HAVANA gene 75595805 75596206 402.0 - 0 ENSG00000242951.1 processed_pseudogene AC007182.2 1 OTTHUMG00000157994.1 pseudo_consens +22616 chr14 ENSEMBL gene 75604209 75604261 53.0 + 0 ENSG00000280494.2 miRNA MIR7641-2 3 +22617 chr14 ENSEMBL gene 75604173 75604278 106.0 + 0 ENSG00000201096.1 rRNA_pseudogene RNA5SP387 3 +22618 chr14 HAVANA gene 75649791 75661189 2633.0 - 0 ENSG00000133935.6 protein_coding ERG28 2 OTTHUMG00000171488.1 +22619 chr14 HAVANA gene 75578617 75663214 4913.0 + 0 ENSG00000119686.9 protein_coding FLVCR2 1 OTTHUMG00000171487.4 ncRNA_host,overlapping_locus +22620 chr14 HAVANA gene 75838157 75839114 958.0 - 0 ENSG00000242488.2 transcribed_processed_pseudogene AF107885.1 1 OTTHUMG00000158055.2 pseudo_consens,overlapping_locus +22621 chr14 HAVANA gene 75814502 75847698 609.0 - 0 ENSG00000259103.2 antisense AF107885.2 2 OTTHUMG00000171612.2 overlapping_locus +22622 chr14 HAVANA gene 75633625 75955078 12266.0 + 0 ENSG00000119685.19 protein_coding TTLL5 1 OTTHUMG00000171611.5 overlapping_locus +22623 chr14 HAVANA gene 75970924 75971587 580.0 + 0 ENSG00000258876.1 lincRNA TGFB3-AS1 2 OTTHUMG00000171614.1 overlapping_locus +22624 chr14 HAVANA gene 75958099 75982991 4914.0 - 0 ENSG00000119699.7 protein_coding TGFB3 1 OTTHUMG00000171489.1 +22625 chr14 HAVANA gene 76013679 76014143 465.0 + 0 ENSG00000258578.2 processed_pseudogene AC008015.1 1 OTTHUMG00000171615.2 pseudo_consens,overlapping_locus +22626 chr14 HAVANA gene 75902136 76084585 4172.0 + 0 ENSG00000119650.12 protein_coding IFT43 2 OTTHUMG00000171613.1 overlapping_locus +22627 chr14 HAVANA gene 76131707 76152627 517.0 - 0 ENSG00000283629.1 antisense AC016526.4 2 OTTHUMG00000191804.1 +22628 chr14 HAVANA gene 76151916 76254342 21987.0 + 0 ENSG00000089916.17 protein_coding GPATCH2L 1 OTTHUMG00000171490.4 overlapping_locus +22629 chr14 HAVANA gene 76235817 76263474 520.0 + 0 ENSG00000258454.1 sense_overlapping AC016526.2 2 OTTHUMG00000171492.1 overlapping_locus +22630 chr14 HAVANA gene 76279173 76283103 3931.0 + 0 ENSG00000280078.1 TEC AC016526.3 2 OTTHUMG00000172976.1 +22631 chr14 HAVANA gene 76280943 76310066 520.0 - 0 ENSG00000258402.1 lincRNA AC016526.1 2 OTTHUMG00000171617.1 +22632 chr14 HAVANA gene 76310712 76501837 5930.0 + 0 ENSG00000119715.15 protein_coding ESRRB 2 OTTHUMG00000160457.7 +22633 chr14 HAVANA gene 76633714 76634028 315.0 + 0 ENSG00000271423.1 processed_pseudogene CYCSP1 1 OTTHUMG00000184602.1 pseudo_consens +22634 chr14 HAVANA gene 76634775 76635661 887.0 - 0 ENSG00000242952.1 transcribed_processed_pseudogene RPSAP3 1 OTTHUMG00000158059.1 pseudo_consens,overlapping_locus +22635 chr14 HAVANA gene 76690139 76690742 604.0 - 0 ENSG00000258566.2 processed_pseudogene AC007376.1 1 OTTHUMG00000183857.1 pseudo_consens,overlapping_locus +22636 chr14 HAVANA gene 76495363 76726712 632.0 - 0 ENSG00000259124.1 lincRNA AC008050.1 2 OTTHUMG00000171618.1 overlapping_locus +22637 chr14 HAVANA gene 76710658 76761388 540.0 - 0 ENSG00000258569.1 lincRNA AC007376.2 2 OTTHUMG00000171620.1 overlapping_locus +22638 chr14 HAVANA gene 76774284 76781518 954.0 - 0 ENSG00000259081.1 antisense AF111169.3 2 OTTHUMG00000171621.1 +22639 chr14 HAVANA gene 76778952 76782249 721.0 + 0 ENSG00000258610.1 lincRNA AF111169.1 2 OTTHUMG00000171622.1 overlapping_locus +22640 chr14 HAVANA gene 76762189 76783015 6502.0 + 0 ENSG00000071246.10 protein_coding VASH1 2 OTTHUMG00000171493.3 overlapping_locus +22641 chr14 HAVANA gene 76781733 76786724 1843.0 - 0 ENSG00000258301.3 lincRNA VASH1-AS1 2 OTTHUMG00000171623.2 +22642 chr14 HAVANA gene 76786178 76826246 6414.0 - 0 ENSG00000013523.9 protein_coding ANGEL1 1 OTTHUMG00000171494.8 +22643 chr14 HAVANA gene 76826372 76870302 2305.0 + 0 ENSG00000100565.15 protein_coding LRRC74A 2 OTTHUMG00000150153.3 +22644 chr14 HAVANA gene 76886377 76886750 374.0 - 0 ENSG00000241081.1 processed_pseudogene RPL22P2 1 OTTHUMG00000158060.1 pseudo_consens +22645 chr14 ENSEMBL gene 76890263 76890613 351.0 + 0 ENSG00000223174.1 misc_RNA RN7SKP17 3 +22646 chr14 HAVANA gene 76921840 76924649 756.0 - 0 ENSG00000259058.1 lincRNA AF111169.2 2 OTTHUMG00000171624.1 +22647 chr14 HAVANA gene 76959638 76965802 581.0 + 0 ENSG00000258602.1 lincRNA LINC01629 2 OTTHUMG00000171577.1 +22648 chr14 ENSEMBL gene 76967518 76967765 248.0 - 0 ENSG00000266553.2 misc_RNA RN7SL356P 3 +22649 chr14 HAVANA gene 76968683 76969145 463.0 + 0 ENSG00000243225.2 processed_pseudogene AC007686.1 1 OTTHUMG00000158062.2 pseudo_consens +22650 chr14 HAVANA gene 76958098 77000609 2847.0 - 0 ENSG00000285966.1 lincRNA AC007686.4 2 OTTHUMG00000192933.1 ncRNA_host +22651 chr14 HAVANA gene 77024543 77028699 4157.0 - 0 ENSG00000119669.4 protein_coding IRF2BPL 2 OTTHUMG00000171578.1 +22652 chr14 HAVANA gene 77028086 77031572 3487.0 + 0 ENSG00000273729.1 antisense AC007686.3 2 OTTHUMG00000187016.2 +22653 chr14 HAVANA gene 77041064 77069503 2924.0 + 0 ENSG00000246548.3 lincRNA LINC02288 2 OTTHUMG00000171579.2 +22654 chr14 HAVANA gene 77069180 77076344 2793.0 - 0 ENSG00000258819.1 lincRNA LINC02289 2 OTTHUMG00000171581.1 overlapping_locus +22655 chr14 HAVANA gene 77048172 77086446 469.0 - 0 ENSG00000258473.1 lincRNA AC007686.2 2 OTTHUMG00000171580.1 overlapping_locus +22656 chr14 HAVANA gene 77098097 77117287 5300.0 + 0 ENSG00000198894.7 protein_coding CIPC 1 OTTHUMG00000171573.2 overlapping_locus +22657 chr14 HAVANA gene 77131270 77142734 3862.0 - 0 ENSG00000177108.5 protein_coding ZDHHC22 2 OTTHUMG00000171575.3 +22658 chr14 HAVANA gene 77140683 77142996 2314.0 + 0 ENSG00000269883.1 antisense AC007375.2 2 OTTHUMG00000187021.1 overlapping_locus +22659 chr14 HAVANA gene 77173075 77173652 578.0 - 0 ENSG00000258552.1 processed_pseudogene FAM204DP 1 OTTHUMG00000171576.1 pseudo_consens +22660 chr14 ENSEMBL gene 77201026 77201140 115.0 - 0 ENSG00000201384.1 snoRNA RF00421 3 +22661 chr14 HAVANA gene 77098311 77225462 603.0 + 0 ENSG00000259164.1 protein_coding AC007375.1 2 OTTHUMG00000171574.1 overlapping_locus +22662 chr14 HAVANA gene 77116568 77259495 6363.0 + 0 ENSG00000165548.10 protein_coding TMEM63C 2 OTTHUMG00000171557.4 overlapping_locus +22663 chr14 ENSEMBL gene 77266218 77266290 73.0 + 0 ENSG00000221754.1 miRNA MIR1260A 3 +22664 chr14 HAVANA gene 77265483 77271312 1884.0 - 0 ENSG00000165553.4 protein_coding NGB 2 OTTHUMG00000171558.1 +22665 chr14 HAVANA gene 77274956 77320884 10008.0 - 0 ENSG00000009830.11 protein_coding POMT2 1 OTTHUMG00000171556.4 +22666 chr14 HAVANA gene 77320884 77331597 8477.0 + 0 ENSG00000100577.18 protein_coding GSTZ1 1 OTTHUMG00000171551.2 +22667 chr14 HAVANA gene 77359423 77359916 494.0 + 0 ENSG00000258510.2 processed_pseudogene AC007954.1 1 OTTHUMG00000171553.2 pseudo_consens +22668 chr14 HAVANA gene 77335021 77377109 7784.0 - 0 ENSG00000100580.7 protein_coding TMED8 2 OTTHUMG00000171552.1 +22669 chr14 HAVANA gene 77376689 77391497 2616.0 + 0 ENSG00000100583.4 protein_coding SAMD15 2 OTTHUMG00000167428.2 +22670 chr14 HAVANA gene 77394021 77423517 2492.0 - 0 ENSG00000165555.9 protein_coding NOXRED1 2 OTTHUMG00000171554.2 +22671 chr14 HAVANA gene 77426675 77457952 3695.0 - 0 ENSG00000151445.15 protein_coding VIPAS39 2 OTTHUMG00000171538.3 +22672 chr14 ENSEMBL gene 77466284 77466436 153.0 + 0 ENSG00000212371.1 snoRNA RF00404 3 +22673 chr14 HAVANA gene 77457870 77469474 2948.0 + 0 ENSG00000100591.7 protein_coding AHSA1 1 OTTHUMG00000171539.2 ncRNA_host +22674 chr14 HAVANA gene 77474394 77498850 4131.0 - 0 ENSG00000100593.17 protein_coding ISM2 2 OTTHUMG00000158563.5 +22675 chr14 ENSEMBL gene 77547566 77547846 281.0 - 0 ENSG00000240233.3 misc_RNA RN7SL587P 3 +22676 chr14 HAVANA gene 77505997 77616773 9143.0 - 0 ENSG00000100596.6 protein_coding SPTLC2 1 OTTHUMG00000171540.1 ncRNA_host +22677 chr14 HAVANA gene 77652827 77653055 229.0 - 0 ENSG00000258668.1 processed_pseudogene COX6CP11 1 OTTHUMG00000171541.1 pseudo_consens +22678 chr14 HAVANA gene 77683202 77683989 490.0 - 0 ENSG00000239272.1 processed_pseudogene RPL21P10 1 OTTHUMG00000158069.1 pseudo_consens,overlapping_locus +22679 chr14 HAVANA gene 77696591 77697377 787.0 + 0 ENSG00000258917.1 processed_pseudogene ZMYND19P1 1 OTTHUMG00000171543.1 pseudo_consens +22680 chr14 HAVANA gene 77672404 77708020 2844.0 - 0 ENSG00000100601.9 protein_coding ALKBH1 2 OTTHUMG00000171542.1 overlapping_locus +22681 chr14 HAVANA gene 77708071 77761104 2631.0 + 0 ENSG00000119705.9 protein_coding SLIRP 1 OTTHUMG00000171526.1 overlapping_locus +22682 chr14 HAVANA gene 77717599 77761207 2432.0 - 0 ENSG00000100603.13 protein_coding SNW1 2 OTTHUMG00000171527.2 +22683 chr14 HAVANA gene 77760830 77769742 704.0 + 0 ENSG00000197734.9 protein_coding C14orf178 1 OTTHUMG00000171528.1 overlapping_locus +22684 chr14 ENSEMBL gene 77821030 77821142 113.0 - 0 ENSG00000199440.1 misc_RNA RF00019 3 +22685 chr14 HAVANA gene 77800083 77935012 5317.0 + 0 ENSG00000063761.15 protein_coding ADCK1 1 OTTHUMG00000171520.2 +22686 chr14 HAVANA gene 78059942 78060278 337.0 - 0 ENSG00000258421.2 processed_pseudogene FXNP1 1 OTTHUMG00000171521.2 pseudo_consens +22687 chr14 ENSEMBL gene 78177803 78177921 119.0 - 0 ENSG00000199454.1 rRNA_pseudogene RNA5SP388 3 +22688 chr14 HAVANA gene 78231281 78231619 339.0 - 0 ENSG00000239438.1 processed_pseudogene RPS26P48 1 OTTHUMG00000158071.1 pseudo_consens +22689 chr14 HAVANA gene 78279572 78283376 525.0 - 0 ENSG00000258723.1 antisense AF099810.1 2 OTTHUMG00000171512.1 +22690 chr14 HAVANA gene 78695321 78698122 700.0 - 0 ENSG00000258719.1 antisense AC009396.2 2 OTTHUMG00000171513.1 +22691 chr14 HAVANA gene 78703615 78709934 354.0 - 0 ENSG00000258874.1 antisense AC009396.3 2 OTTHUMG00000171514.1 +22692 chr14 HAVANA gene 78744398 78753878 1079.0 - 0 ENSG00000258478.1 antisense AC009396.1 2 OTTHUMG00000171515.1 +22693 chr14 HAVANA gene 79072132 79074767 592.0 - 0 ENSG00000258829.1 antisense AC026888.1 2 OTTHUMG00000171516.1 +22694 chr14 HAVANA gene 79199982 79201632 656.0 + 0 ENSG00000258419.1 sense_intronic AC022469.1 2 OTTHUMG00000171503.1 overlapping_locus +22695 chr14 HAVANA gene 79246668 79249023 396.0 - 0 ENSG00000258662.1 antisense AC022469.2 2 OTTHUMG00000171517.1 +22696 chr14 HAVANA gene 79611418 79633311 551.0 - 0 ENSG00000259106.1 antisense AC008056.2 2 OTTHUMG00000171518.1 +22697 chr14 HAVANA gene 79661666 79791263 394.0 - 0 ENSG00000258637.1 antisense AC008056.1 2 OTTHUMG00000171519.1 +22698 chr14 HAVANA gene 78170373 79868290 15535.0 + 0 ENSG00000021645.18 protein_coding NRXN3 2 OTTHUMG00000171502.6 overlapping_locus +22699 chr14 HAVANA gene 79893080 79974169 446.0 - 0 ENSG00000258416.1 lincRNA AF123462.1 2 OTTHUMG00000171504.1 +22700 chr14 HAVANA gene 80197527 80387757 7494.0 - 0 ENSG00000211448.11 protein_coding DIO2 2 OTTHUMG00000171443.5 +22701 chr14 HAVANA gene 80211419 80455469 1597.0 + 0 ENSG00000258766.1 antisense DIO2-AS1 2 OTTHUMG00000171497.1 +22702 chr14 HAVANA gene 80822524 80822796 273.0 + 0 ENSG00000258452.1 processed_pseudogene AC022404.1 2 OTTHUMG00000171444.1 +22703 chr14 HAVANA gene 80476983 80959517 9400.0 - 0 ENSG00000100629.16 protein_coding CEP128 1 OTTHUMG00000171442.4 +22704 chr14 HAVANA gene 80981988 80983638 1651.0 + 0 ENSG00000258915.1 processed_pseudogene BHLHB9P1 1 OTTHUMG00000171430.1 pseudo_consens,overlapping_locus +22705 chr14 HAVANA gene 81001166 81001786 525.0 - 0 ENSG00000271705.1 unprocessed_pseudogene RPL17P3 1 OTTHUMG00000184421.1 pseudo_consens +22706 chr14 HAVANA gene 81003325 81003645 321.0 - 0 ENSG00000271656.1 processed_pseudogene AC007262.1 1 OTTHUMG00000184540.1 pseudo_consens +22707 chr14 HAVANA gene 81032529 81033404 876.0 + 0 ENSG00000259167.2 processed_pseudogene NMNAT1P1 1 OTTHUMG00000171431.2 pseudo_consens,overlapping_locus +22708 chr14 HAVANA gene 80954989 81146302 5754.0 + 0 ENSG00000165409.17 protein_coding TSHR 2 OTTHUMG00000171429.3 overlapping_locus +22709 chr14 HAVANA gene 81012099 81170414 8011.0 - 0 ENSG00000284959.1 antisense AC007262.2 2 OTTHUMG00000171432.2 +22710 chr14 ENSEMBL gene 81202695 81202834 140.0 - 0 ENSG00000221303.1 snoRNA SNORA79 3 +22711 chr14 HAVANA gene 81175452 81221377 6819.0 - 0 ENSG00000165417.11 protein_coding GTF2A1 2 OTTHUMG00000171414.1 ncRNA_host +22712 chr14 HAVANA gene 81221218 81222460 1130.0 + 0 ENSG00000273783.1 antisense AL136040.1 2 OTTHUMG00000187045.1 +22713 chr14 HAVANA gene 81246295 81246563 269.0 - 0 ENSG00000205579.3 processed_pseudogene DYNLL1P1 1 OTTHUMG00000171415.2 pseudo_consens +22714 chr14 HAVANA gene 81259565 81260239 675.0 - 0 ENSG00000270343.1 processed_pseudogene UNGP3 1 OTTHUMG00000184395.1 pseudo_consens +22715 chr14 HAVANA gene 81332961 81333361 401.0 - 0 ENSG00000242163.1 processed_pseudogene AL121769.1 1 OTTHUMG00000158077.1 pseudo_consens,overlapping_locus +22716 chr14 HAVANA gene 81412970 81413239 270.0 + 0 ENSG00000258605.1 processed_pseudogene DYNLL1P2 1 OTTHUMG00000171417.1 pseudo_consens +22717 chr14 HAVANA gene 81260656 81436465 7812.0 - 0 ENSG00000140022.11 protein_coding STON2 1 OTTHUMG00000171416.5 overlapping_locus +22718 chr14 HAVANA gene 81441987 81450157 637.0 - 0 ENSG00000258675.1 lincRNA LINC02308 2 OTTHUMG00000171418.1 +22719 chr14 HAVANA gene 81471549 81533861 9559.0 - 0 ENSG00000071537.13 protein_coding SEL1L 2 OTTHUMG00000171419.2 +22720 chr14 HAVANA gene 81605347 81623061 1187.0 - 0 ENSG00000258977.1 lincRNA LINC01467 2 OTTHUMG00000171398.1 +22721 chr14 HAVANA gene 81661428 81662874 1447.0 + 0 ENSG00000258841.1 processed_pseudogene EEF1A1P2 1 OTTHUMG00000171399.1 pseudo_consens +22722 chr14 HAVANA gene 81727780 81743138 824.0 - 0 ENSG00000258718.2 lincRNA LINC02311 2 OTTHUMG00000171400.2 +22723 chr14 HAVANA gene 81777016 81777613 598.0 - 0 ENSG00000241891.1 processed_pseudogene RPL9P6 1 OTTHUMG00000158078.1 pseudo_consens +22724 chr14 HAVANA gene 81916231 81917888 1658.0 + 0 ENSG00000258501.1 processed_pseudogene EIF3LP1 1 OTTHUMG00000171402.1 pseudo_consens,overlapping_locus +22725 chr14 HAVANA gene 81741002 82030349 559.0 + 0 ENSG00000259035.1 lincRNA AL355838.1 2 OTTHUMG00000171401.1 overlapping_locus +22726 chr14 ENSEMBL gene 82429872 82430156 285.0 + 0 ENSG00000276782.1 misc_RNA RF00017 3 +22727 chr14 HAVANA gene 82692704 82693055 352.0 - 0 ENSG00000259032.2 processed_pseudogene ENSAP2 1 OTTHUMG00000171388.2 pseudo_consens +22728 chr14 HAVANA gene 82642620 82706825 1754.0 + 0 ENSG00000258743.5 lincRNA LINC02301 2 OTTHUMG00000171387.1 +22729 chr14 HAVANA gene 82788478 82796221 539.0 - 0 ENSG00000258683.1 lincRNA AL355095.1 2 OTTHUMG00000171389.1 +22730 chr14 HAVANA gene 83017106 83018144 744.0 - 0 ENSG00000258600.1 lincRNA AL359238.1 2 OTTHUMG00000171380.1 +22731 chr14 HAVANA gene 83018201 83039602 448.0 - 0 ENSG00000258426.1 lincRNA AL162872.1 2 OTTHUMG00000171381.1 +22732 chr14 ENSEMBL gene 83048579 83048640 62.0 + 0 ENSG00000252369.1 snRNA RNU7-51P 3 +22733 chr14 ENSEMBL gene 83750384 83750501 118.0 + 0 ENSG00000238561.1 snRNA RNU6ATAC28P 3 +22734 chr14 HAVANA gene 83805496 83805640 145.0 - 0 ENSG00000258549.1 processed_pseudogene AL161713.1 2 OTTHUMG00000171382.1 +22735 chr14 HAVANA gene 83906872 83915050 476.0 - 0 ENSG00000258532.1 lincRNA LINC02305 2 OTTHUMG00000171383.1 +22736 chr14 HAVANA gene 83986776 84140544 783.0 - 0 ENSG00000285826.1 lincRNA AL356807.1 2 OTTHUMG00000192826.1 +22737 chr14 HAVANA gene 84172841 84173606 766.0 + 0 ENSG00000258762.1 processed_pseudogene MTND4P33 2 OTTHUMG00000171375.1 +22738 chr14 HAVANA gene 84173791 84175510 1720.0 + 0 ENSG00000258923.2 processed_pseudogene MTND5P35 2 OTTHUMG00000171376.2 +22739 chr14 HAVANA gene 84176419 84177088 670.0 + 0 ENSG00000259012.2 processed_pseudogene MTCYBP27 2 OTTHUMG00000171377.2 +22740 chr14 ENSEMBL gene 84739942 84740052 111.0 + 0 ENSG00000251895.1 snRNA RNU6-976P 3 +22741 chr14 HAVANA gene 84951274 84951373 100.0 + 0 ENSG00000258506.2 processed_pseudogene AL163642.1 2 OTTHUMG00000171378.2 +22742 chr14 HAVANA gene 84998278 84999296 1019.0 - 0 ENSG00000271712.1 processed_pseudogene AL163642.2 1 OTTHUMG00000184527.1 pseudo_consens +22743 chr14 HAVANA gene 85202849 85239474 593.0 - 0 ENSG00000259044.1 lincRNA AL357172.1 2 OTTHUMG00000171379.1 +22744 chr14 HAVANA gene 85387275 85388765 511.0 + 0 ENSG00000258814.1 lincRNA LINC02329 2 OTTHUMG00000171368.1 +22745 chr14 HAVANA gene 85393879 85420074 558.0 + 0 ENSG00000259107.1 lincRNA LINC00911 2 OTTHUMG00000171369.1 +22746 chr14 HAVANA gene 85362457 85516934 558.0 - 0 ENSG00000258902.1 lincRNA AL049775.2 2 OTTHUMG00000171367.1 +22747 chr14 HAVANA gene 85528599 85529386 643.0 + 0 ENSG00000258945.1 lincRNA AL049775.3 2 OTTHUMG00000171371.1 +22748 chr14 HAVANA gene 85524432 85529988 2448.0 - 0 ENSG00000205562.2 lincRNA AL049775.1 2 OTTHUMG00000171370.2 +22749 chr14 HAVANA gene 85530144 85654426 34899.0 + 0 ENSG00000185070.10 protein_coding FLRT2 1 OTTHUMG00000171372.2 +22750 chr14 HAVANA gene 86014686 86062960 768.0 - 0 ENSG00000258912.1 lincRNA LINC02316 2 OTTHUMG00000171374.1 +22751 chr14 HAVANA gene 85934710 86129778 1568.0 + 0 ENSG00000258733.5 lincRNA LINC02328 2 OTTHUMG00000171373.2 +22752 chr14 HAVANA gene 86332376 86401285 207.0 + 0 ENSG00000258994.1 lincRNA LINC02309 2 OTTHUMG00000171356.1 +22753 chr14 HAVANA gene 86905778 86922755 1763.0 + 0 ENSG00000258804.1 lincRNA LINC01148 1 OTTHUMG00000171357.1 +22754 chr14 HAVANA gene 86936640 86989125 412.0 + 0 ENSG00000259061.1 lincRNA AL358292.1 2 OTTHUMG00000171351.2 +22755 chr14 HAVANA gene 87251103 87251679 332.0 + 0 ENSG00000258496.1 lincRNA AL352955.1 2 OTTHUMG00000171352.1 +22756 chr14 HAVANA gene 87323753 87332390 369.0 + 0 ENSG00000258958.1 lincRNA AL157688.1 2 OTTHUMG00000171353.1 +22757 chr14 HAVANA gene 87568181 87569399 547.0 + 0 ENSG00000259028.1 lincRNA AL135746.1 2 OTTHUMG00000171355.1 +22758 chr14 HAVANA gene 87353070 87573022 544.0 - 0 ENSG00000258859.1 lincRNA LINC02296 2 OTTHUMG00000171354.1 +22759 chr14 HAVANA gene 87634379 87655294 555.0 - 0 ENSG00000258770.1 lincRNA LINC02330 2 OTTHUMG00000171350.1 +22760 chr14 HAVANA gene 87810982 87838339 790.0 + 0 ENSG00000259077.1 lincRNA AL136501.1 2 OTTHUMG00000170726.1 +22761 chr14 HAVANA gene 87710419 87872291 1845.0 - 0 ENSG00000258807.5 lincRNA AL359237.1 2 OTTHUMG00000170725.1 overlapping_locus +22762 chr14 HAVANA gene 87952527 87955203 2470.0 + 0 ENSG00000259096.1 processed_pseudogene SHLD2P2 1 OTTHUMG00000170727.1 pseudo_consens +22763 chr14 HAVANA gene 87837820 87993665 6825.0 - 0 ENSG00000054983.16 protein_coding GALC 2 OTTHUMG00000028646.3 overlapping_locus +22764 chr14 ENSEMBL gene 87996345 87996448 104.0 - 0 ENSG00000252783.1 snRNA RNU6-835P 3 +22765 chr14 HAVANA gene 88005124 88014811 4522.0 + 0 ENSG00000140030.5 protein_coding GPR65 2 OTTHUMG00000028648.5 +22766 chr14 HAVANA gene 88010787 88015611 331.0 - 0 ENSG00000258407.1 antisense AL157955.1 2 OTTHUMG00000170738.2 +22767 chr14 HAVANA gene 88018605 88036319 558.0 - 0 ENSG00000258826.5 lincRNA AL157955.2 2 OTTHUMG00000170739.1 +22768 chr14 HAVANA gene 88024550 88097619 2807.0 + 0 ENSG00000258867.5 lincRNA LINC01146 2 OTTHUMG00000170740.2 +22769 chr14 HAVANA gene 88136733 88159845 428.0 - 0 ENSG00000258975.1 lincRNA AL133279.2 2 OTTHUMG00000170741.1 overlapping_locus +22770 chr14 HAVANA gene 88158240 88160591 2352.0 - 0 ENSG00000259998.1 lincRNA AL133279.3 2 OTTHUMG00000172985.2 overlapping_locus +22771 chr14 HAVANA gene 88175391 88180198 608.0 + 0 ENSG00000258538.5 lincRNA AL133279.1 1 OTTHUMG00000170742.1 +22772 chr14 HAVANA gene 88180103 88326907 8258.0 - 0 ENSG00000100433.15 protein_coding KCNK10 2 OTTHUMG00000170743.3 +22773 chr14 HAVANA gene 88384924 88470350 6872.0 + 0 ENSG00000042317.16 protein_coding SPATA7 1 OTTHUMG00000170744.3 +22774 chr14 ENSEMBL gene 88513498 88513663 166.0 + 0 ENSG00000222990.1 snRNA RNU4-22P 3 +22775 chr14 HAVANA gene 88499334 88515502 905.0 + 0 ENSG00000258983.2 antisense AL162171.2 2 OTTHUMG00000170801.2 ncRNA_host +22776 chr14 HAVANA gene 88551597 88552493 718.0 + 0 ENSG00000258789.1 antisense AL162171.1 2 OTTHUMG00000170802.1 +22777 chr14 HAVANA gene 88465778 88554733 7396.0 - 0 ENSG00000070778.12 protein_coding PTPN21 1 OTTHUMG00000170766.1 +22778 chr14 HAVANA gene 88589231 88592408 3178.0 + 0 ENSG00000278576.1 sense_intronic AL162171.3 2 OTTHUMG00000188630.1 +22779 chr14 HAVANA gene 88562909 88627596 20977.0 + 0 ENSG00000100722.19 protein_coding ZC3H14 1 OTTHUMG00000170803.7 +22780 chr14 HAVANA gene 88612431 88792752 11000.0 - 0 ENSG00000165521.15 protein_coding EML5 1 OTTHUMG00000170811.3 +22781 chr14 ENSEMBL gene 88820297 88820432 136.0 + 0 ENSG00000200653.1 snRNA RNU4-92P 3 +22782 chr14 HAVANA gene 88819608 88822151 2544.0 - 0 ENSG00000274492.1 lincRNA AL121768.1 2 OTTHUMG00000187066.1 +22783 chr14 ENSEMBL gene 88840165 88840263 99.0 + 0 ENSG00000207342.1 misc_RNA RF00019 3 +22784 chr14 HAVANA gene 88824153 88881078 6257.0 + 0 ENSG00000165533.18 protein_coding TTC8 1 OTTHUMG00000170884.3 ncRNA_host +22785 chr14 HAVANA gene 89013386 89025807 490.0 + 0 ENSG00000283627.1 lincRNA AL137785.1 2 OTTHUMG00000191619.1 +22786 chr14 HAVANA gene 89110148 89111223 1076.0 - 0 ENSG00000258990.2 processed_pseudogene MPPE1P1 1 OTTHUMG00000170891.3 pseudo_consens +22787 chr14 HAVANA gene 89156743 89157574 832.0 + 0 ENSG00000277801.1 lincRNA AL138478.1 2 OTTHUMG00000188137.1 overlapping_locus +22788 chr14 HAVANA gene 89290205 89291594 1390.0 - 0 ENSG00000259151.2 transcribed_processed_pseudogene CAP2P1 1 OTTHUMG00000170969.2 pseudo_consens,overlapping_locus +22789 chr14 HAVANA gene 89355060 89356571 458.0 + 0 ENSG00000258699.1 antisense AL357093.1 2 OTTHUMG00000170971.1 overlapping_locus +22790 chr14 HAVANA gene 89350285 89364699 907.0 + 0 ENSG00000258752.1 antisense AL357093.2 1 OTTHUMG00000170970.1 overlapping_locus +22791 chr14 HAVANA gene 89399995 89409469 341.0 + 0 ENSG00000258380.1 antisense AL356805.1 1 OTTHUMG00000170972.1 +22792 chr14 HAVANA gene 89417354 89419793 1077.0 + 0 ENSG00000258920.1 antisense FOXN3-AS1 2 OTTHUMG00000170973.1 +22793 chr14 HAVANA gene 89576216 89577477 1262.0 + 0 ENSG00000259073.1 antisense FOXN3-AS2 2 OTTHUMG00000170974.1 +22794 chr14 HAVANA gene 89124871 89619149 11033.0 - 0 ENSG00000053254.15 protein_coding FOXN3 1 OTTHUMG00000170898.4 overlapping_locus +22795 chr14 ENSEMBL gene 89621918 89622207 290.0 + 0 ENSG00000201027.1 misc_RNA RN7SKP107 3 +22796 chr14 HAVANA gene 89628921 89642671 1122.0 - 0 ENSG00000258792.4 lincRNA AL137230.1 1 OTTHUMG00000170975.1 overlapping_locus +22797 chr14 ENSEMBL gene 89650793 89650903 111.0 - 0 ENSG00000252655.1 misc_RNA RF00019 3 +22798 chr14 ENSEMBL gene 89712511 89712823 313.0 + 0 ENSG00000200312.1 misc_RNA RN7SKP255 3 +22799 chr14 HAVANA gene 89736965 89738391 1090.0 - 0 ENSG00000259050.2 processed_pseudogene CHORDC2P 1 OTTHUMG00000170976.2 pseudo_consens,overlapping_locus +22800 chr14 HAVANA gene 89892128 89892443 316.0 + 0 ENSG00000230997.5 processed_pseudogene RAB42P1 2 OTTHUMG00000171015.2 +22801 chr14 HAVANA gene 89412312 89954659 452.0 - 0 ENSG00000259053.1 processed_transcript AL137230.2 2 OTTHUMG00000170977.1 ncRNA_host,overlapping_locus +22802 chr14 HAVANA gene 89794669 89954777 8302.0 - 0 ENSG00000140025.15 protein_coding EFCAB11 2 OTTHUMG00000148671.3 overlapping_locus +22803 chr14 HAVANA gene 89954939 90044768 6227.0 + 0 ENSG00000042088.13 protein_coding TDP1 2 OTTHUMG00000171016.3 +22804 chr14 HAVANA gene 90107675 90107995 321.0 + 0 ENSG00000258544.1 processed_pseudogene GLRXP2 1 OTTHUMG00000171018.1 pseudo_consens,overlapping_locus +22805 chr14 ENSEMBL gene 90177222 90177330 109.0 + 0 ENSG00000201351.1 misc_RNA RF00019 3 +22806 chr14 HAVANA gene 90061765 90185857 2522.0 + 0 ENSG00000152315.4 protein_coding KCNK13 2 OTTHUMG00000171017.1 ncRNA_host,overlapping_locus +22807 chr14 HAVANA gene 90256495 90275429 6161.0 + 0 ENSG00000100764.13 protein_coding PSMC1 2 OTTHUMG00000171019.3 +22808 chr14 HAVANA gene 90267856 90332137 17565.0 - 0 ENSG00000119720.17 protein_coding NRDE2 2 OTTHUMG00000171020.5 +22809 chr14 HAVANA gene 90366697 90367179 483.0 - 0 ENSG00000242571.1 processed_pseudogene RPL21P11 2 OTTHUMG00000158081.1 +22810 chr14 HAVANA gene 90383365 90387973 4609.0 + 0 ENSG00000275198.1 lincRNA AL512791.2 2 OTTHUMG00000187067.1 +22811 chr14 HAVANA gene 90402523 90405235 300.0 - 0 ENSG00000258424.1 antisense AL512791.1 2 OTTHUMG00000171045.1 +22812 chr14 HAVANA gene 90396502 90408261 7705.0 + 0 ENSG00000198668.10 protein_coding CALM1 1 OTTHUMG00000171044.2 +22813 chr14 HAVANA gene 90452063 90455117 426.0 - 0 ENSG00000258678.1 lincRNA LINC02317 2 OTTHUMG00000171046.1 +22814 chr14 HAVANA gene 90455230 90458905 2068.0 + 0 ENSG00000233208.5 lincRNA LINC00642 1 OTTHUMG00000149923.1 +22815 chr14 HAVANA gene 90489010 90491637 2628.0 - 0 ENSG00000259789.2 processed_transcript AL096869.3 2 OTTHUMG00000172987.3 +22816 chr14 HAVANA gene 90567495 90569976 559.0 + 0 ENSG00000258935.1 lincRNA AL096869.1 2 OTTHUMG00000171048.1 +22817 chr14 HAVANA gene 90642638 90648894 1376.0 + 0 ENSG00000259163.1 antisense AL096869.2 2 OTTHUMG00000171050.1 +22818 chr14 HAVANA gene 90675118 90676294 539.0 + 0 ENSG00000258437.1 antisense AL139193.1 2 OTTHUMG00000171051.1 +22819 chr14 HAVANA gene 90697333 90699374 1954.0 + 0 ENSG00000258716.1 antisense AL139193.2 2 OTTHUMG00000171052.1 +22820 chr14 HAVANA gene 90766531 90766989 459.0 + 0 ENSG00000213315.5 processed_pseudogene AL122020.1 1 OTTHUMG00000158116.1 pseudo_consens +22821 chr14 HAVANA gene 90524564 90816479 21268.0 - 0 ENSG00000165914.14 protein_coding TTC7B 1 OTTHUMG00000171047.4 +22822 chr14 HAVANA gene 90822365 90828128 384.0 - 0 ENSG00000258884.1 lincRNA LINC02321 2 OTTHUMG00000171053.1 +22823 chr14 HAVANA gene 90847862 91060636 27726.0 - 0 ENSG00000100784.11 protein_coding RPS6KA5 1 OTTHUMG00000171055.5 +22824 chr14 ENSEMBL gene 91091077 91091138 62.0 + 0 ENSG00000252644.1 snRNA RNU7-30P 3 +22825 chr14 ENSEMBL gene 91126425 91126553 129.0 + 0 ENSG00000221102.1 snoRNA SNORA11B 3 +22826 chr14 HAVANA gene 91060333 91225632 7212.0 + 0 ENSG00000133943.20 protein_coding DGLUCY 1 OTTHUMG00000164980.6 ncRNA_host +22827 chr14 HAVANA gene 91242759 91252211 1916.0 + 0 ENSG00000258875.5 processed_transcript AL135818.1 1 OTTHUMG00000171098.2 +22828 chr14 HAVANA gene 91232532 91253925 3278.0 - 0 ENSG00000119714.10 protein_coding GPR68 2 OTTHUMG00000167590.4 +22829 chr14 HAVANA gene 91258299 91259003 705.0 + 0 ENSG00000260810.1 lincRNA AL135818.2 2 OTTHUMG00000172988.1 +22830 chr14 HAVANA gene 91271323 91417844 12426.0 - 0 ENSG00000015133.18 protein_coding CCDC88C 1 OTTHUMG00000171099.1 +22831 chr14 HAVANA gene 91419449 91419751 303.0 + 0 ENSG00000258446.1 processed_pseudogene AL133153.1 1 OTTHUMG00000171101.1 pseudo_consens,overlapping_locus +22832 chr14 HAVANA gene 91418266 91421176 303.0 + 0 ENSG00000258798.1 lincRNA AL133153.2 2 OTTHUMG00000171100.1 overlapping_locus +22833 chr14 HAVANA gene 91457611 91510554 5912.0 - 0 ENSG00000100796.17 protein_coding PPP4R3A 2 OTTHUMG00000171102.2 +22834 chr14 HAVANA gene 91554410 91554503 94.0 + 0 ENSG00000278342.1 unprocessed_pseudogene AL133373.1 2 OTTHUMG00000187842.1 +22835 chr14 HAVANA gene 91572444 91575271 2828.0 - 0 ENSG00000279286.2 TEC AL133373.2 2 OTTHUMG00000168701.1 +22836 chr14 HAVANA gene 91603173 91603433 261.0 - 0 ENSG00000268295.1 transcribed_processed_pseudogene POLR3GP1 1 OTTHUMG00000183872.1 pseudo_consens,overlapping_locus +22837 chr14 HAVANA gene 91604402 91605319 918.0 - 0 ENSG00000258774.1 transcribed_processed_pseudogene NANOGP7 1 OTTHUMG00000171119.1 pseudo_consens,overlapping_locus +22838 chr14 HAVANA gene 91709111 91710617 1185.0 + 0 ENSG00000258962.2 processed_pseudogene AL121839.1 1 OTTHUMG00000171120.2 pseudo_consens +22839 chr14 ENSEMBL gene 91714915 91715130 216.0 - 0 ENSG00000275154.1 snoRNA RF00012 3 +22840 chr14 HAVANA gene 91752856 91759798 6943.0 - 0 ENSG00000260711.2 sense_intronic AL121839.2 2 OTTHUMG00000172989.2 overlapping_locus +22841 chr14 HAVANA gene 91580696 91780707 5635.0 - 0 ENSG00000133962.7 protein_coding CATSPERB 2 OTTHUMG00000171118.2 ncRNA_host,overlapping_locus +22842 chr14 HAVANA gene 91779751 91867536 6147.0 - 0 ENSG00000165929.12 protein_coding TC2N 1 OTTHUMG00000171121.1 overlapping_locus +22843 chr14 HAVANA gene 91869412 91947987 4973.0 - 0 ENSG00000140092.14 protein_coding FBLN5 1 OTTHUMG00000171122.3 +22844 chr14 HAVANA gene 92026566 92026887 322.0 + 0 ENSG00000259020.3 processed_pseudogene AL049872.1 2 OTTHUMG00000171129.1 +22845 chr14 HAVANA gene 91965991 92040896 10372.0 - 0 ENSG00000100815.12 protein_coding TRIP11 2 OTTHUMG00000171128.3 overlapping_locus +22846 chr14 HAVANA gene 92044496 92106625 9665.0 - 0 ENSG00000066427.22 protein_coding ATXN3 1 OTTHUMG00000162212.15 overlapping_locus +22847 chr14 HAVANA gene 92116122 92121917 2263.0 - 0 ENSG00000183648.9 protein_coding NDUFB1 2 OTTHUMG00000171180.2 +22848 chr14 HAVANA gene 92121937 92172145 13595.0 + 0 ENSG00000165934.12 protein_coding CPSF2 1 OTTHUMG00000171181.3 +22849 chr14 HAVANA gene 92253493 92263656 580.0 - 0 ENSG00000258481.1 lincRNA AL133240.1 2 OTTHUMG00000171197.1 +22850 chr14 ENSEMBL gene 92265702 92265807 106.0 + 0 ENSG00000201097.1 snRNA RNU6-366P 3 +22851 chr14 HAVANA gene 92322581 92501483 14412.0 + 0 ENSG00000140090.17 protein_coding SLC24A4 1 OTTHUMG00000167589.4 +22852 chr14 HAVANA gene 92513774 92688994 8683.0 + 0 ENSG00000100599.15 protein_coding RIN3 2 OTTHUMG00000171198.1 +22853 chr14 HAVANA gene 92703807 92748702 3899.0 - 0 ENSG00000100600.14 protein_coding LGMN 1 OTTHUMG00000171199.4 +22854 chr14 HAVANA gene 92794231 92839963 3295.0 + 0 ENSG00000066455.12 protein_coding GOLGA5 2 OTTHUMG00000171217.1 +22855 chr14 HAVANA gene 92886352 92893506 2072.0 + 0 ENSG00000258742.5 lincRNA AL117192.1 2 OTTHUMG00000171223.1 +22856 chr14 HAVANA gene 92905697 92907482 1384.0 - 0 ENSG00000258499.1 lincRNA LINC02287 2 OTTHUMG00000171224.2 +22857 chr14 HAVANA gene 92923080 92935293 3102.0 + 0 ENSG00000100604.12 protein_coding CHGA 1 OTTHUMG00000171225.2 +22858 chr14 HAVANA gene 93067452 93072152 4701.0 + 0 ENSG00000258730.1 antisense ITPK1-AS1 2 OTTHUMG00000171263.1 +22859 chr14 HAVANA gene 92936914 93116320 6783.0 - 0 ENSG00000100605.16 protein_coding ITPK1 2 OTTHUMG00000171226.4 +22860 chr14 HAVANA gene 93138066 93138465 400.0 + 0 ENSG00000258595.2 processed_pseudogene AL110118.1 1 OTTHUMG00000171264.2 pseudo_consens +22861 chr14 HAVANA gene 93182196 93184928 2537.0 - 0 ENSG00000165943.4 protein_coding MOAP1 2 OTTHUMG00000169184.2 +22862 chr14 HAVANA gene 93184951 93187089 1365.0 + 0 ENSG00000153485.5 protein_coding TMEM251 2 OTTHUMG00000171265.1 overlapping_locus +22863 chr14 HAVANA gene 93202894 93207094 1154.0 - 0 ENSG00000170270.4 protein_coding GON7 2 OTTHUMG00000171267.1 +22864 chr14 HAVANA gene 93184973 93218586 920.0 + 0 ENSG00000259066.5 protein_coding AL110118.2 2 OTTHUMG00000171266.2 overlapping_locus +22865 chr14 HAVANA gene 93223598 93224139 542.0 - 0 ENSG00000240096.1 processed_pseudogene AL132838.1 1 OTTHUMG00000158117.1 pseudo_consens +22866 chr14 HAVANA gene 93207056 93229215 3694.0 + 0 ENSG00000012963.14 protein_coding UBR7 2 OTTHUMG00000171268.2 overlapping_locus +22867 chr14 HAVANA gene 93244010 93244323 314.0 + 0 ENSG00000241499.1 processed_pseudogene AL132838.2 1 OTTHUMG00000158119.1 pseudo_consens +22868 chr14 HAVANA gene 93237550 93333092 11333.0 - 0 ENSG00000011114.14 protein_coding BTBD7 2 OTTHUMG00000171269.2 +22869 chr14 HAVANA gene 93334528 93335057 530.0 + 0 ENSG00000278396.1 sense_intronic AL122023.1 2 OTTHUMG00000188596.1 overlapping_locus +22870 chr14 HAVANA gene 93347191 93348356 533.0 + 0 ENSG00000187581.2 protein_coding COX8C 2 OTTHUMG00000171279.2 overlapping_locus +22871 chr14 ENSEMBL gene 93397139 93397234 96.0 - 0 ENSG00000202306.1 misc_RNA RF00019 3 +22872 chr14 ENSEMBL gene 93437400 93437510 111.0 - 0 ENSG00000252720.1 snRNA RNU6-1258P 3 +22873 chr14 ENSEMBL gene 93637179 93637338 160.0 + 0 ENSG00000277826.1 misc_RNA RF02271 3 +22874 chr14 HAVANA gene 93333219 93707876 12513.0 + 0 ENSG00000133958.13 protein_coding UNC79 2 OTTHUMG00000029783.5 ncRNA_host,overlapping_locus +22875 chr14 HAVANA gene 93718298 93788481 3892.0 - 0 ENSG00000175785.12 protein_coding PRIMA1 2 OTTHUMG00000141313.2 +22876 chr14 HAVANA gene 93895762 93897759 1998.0 + 0 ENSG00000279593.1 TEC AL132642.2 2 OTTHUMG00000173001.1 +22877 chr14 HAVANA gene 93904730 93927066 2781.0 - 0 ENSG00000258584.2 antisense FAM181A-AS1 1 OTTHUMG00000171296.3 +22878 chr14 HAVANA gene 93918894 93929608 2202.0 + 0 ENSG00000140067.6 protein_coding FAM181A 2 OTTHUMG00000171297.4 +22879 chr14 HAVANA gene 93939555 93944129 553.0 + 0 ENSG00000258987.1 antisense AL132642.1 1 OTTHUMG00000171299.1 +22880 chr14 ENSEMBL gene 93948226 93948302 77.0 - 0 ENSG00000265768.1 miRNA MIR4506 3 +22881 chr14 HAVANA gene 93934153 93976791 5040.0 - 0 ENSG00000100628.11 protein_coding ASB2 1 OTTHUMG00000171298.2 ncRNA_host +22882 chr14 HAVANA gene 93987225 94008863 2705.0 + 0 ENSG00000175699.14 protein_coding CCDC197 2 OTTHUMG00000156974.3 +22883 chr14 HAVANA gene 94026329 94048930 4252.0 + 0 ENSG00000089723.9 protein_coding OTUB2 2 OTTHUMG00000171300.1 +22884 chr14 HAVANA gene 94048291 94081245 8636.0 - 0 ENSG00000089737.16 protein_coding DDX24 1 OTTHUMG00000171301.2 +22885 chr14 HAVANA gene 94081282 94103846 2380.0 + 0 ENSG00000165948.10 protein_coding IFI27L1 1 OTTHUMG00000171302.2 +22886 chr14 HAVANA gene 94104836 94116698 4147.0 + 0 ENSG00000165949.12 protein_coding IFI27 1 OTTHUMG00000171303.5 +22887 chr14 HAVANA gene 94127779 94130253 1662.0 - 0 ENSG00000119632.3 protein_coding IFI27L2 2 OTTHUMG00000171313.1 +22888 chr14 HAVANA gene 94146128 94279735 4974.0 + 0 ENSG00000119698.11 protein_coding PPP4R4 1 OTTHUMG00000171344.2 +22889 chr14 HAVANA gene 94280455 94293271 5472.0 - 0 ENSG00000140093.9 protein_coding SERPINA10 2 OTTHUMG00000171345.2 +22890 chr14 HAVANA gene 94304248 94323394 1852.0 - 0 ENSG00000170099.5 protein_coding SERPINA6 2 OTTHUMG00000171346.1 +22891 chr14 HAVANA gene 94364313 94366698 931.0 - 0 ENSG00000258597.3 polymorphic_pseudogene SERPINA2 2 OTTHUMG00000171347.3 +22892 chr14 HAVANA gene 94376747 94390693 4902.0 - 0 ENSG00000197249.13 protein_coding SERPINA1 1 OTTHUMG00000150355.5 +22893 chr14 HAVANA gene 94442464 94452790 1476.0 - 0 ENSG00000186910.3 protein_coding SERPINA11 2 OTTHUMG00000171348.1 +22894 chr14 HAVANA gene 94430633 94464730 568.0 + 0 ENSG00000256357.1 antisense AL132708.1 2 OTTHUMG00000167713.1 +22895 chr14 HAVANA gene 94462717 94479689 2561.0 - 0 ENSG00000170054.14 protein_coding SERPINA9 2 OTTHUMG00000167710.4 +22896 chr14 HAVANA gene 94487274 94517844 2276.0 - 0 ENSG00000165953.9 protein_coding SERPINA12 2 OTTHUMG00000171349.1 +22897 chr14 HAVANA gene 94561091 94569913 2338.0 + 0 ENSG00000100665.11 protein_coding SERPINA4 2 OTTHUMG00000170859.1 overlapping_locus +22898 chr14 HAVANA gene 94561442 94593120 3775.0 + 0 ENSG00000188488.13 protein_coding SERPINA5 2 OTTHUMG00000170860.4 overlapping_locus +22899 chr14 HAVANA gene 94612377 94624055 5007.0 + 0 ENSG00000196136.17 protein_coding SERPINA3 2 OTTHUMG00000029851.7 overlapping_locus +22900 chr14 HAVANA gene 94592058 94624646 3067.0 + 0 ENSG00000273259.3 protein_coding AL049839.2 2 OTTHUMG00000186018.1 overlapping_locus +22901 chr14 HAVANA gene 94633705 94634524 820.0 + 0 ENSG00000258805.1 processed_pseudogene ADIPOR1P2 1 OTTHUMG00000170861.1 pseudo_consens +22902 chr14 HAVANA gene 94640725 94646994 1718.0 + 0 ENSG00000187483.9 transcribed_unprocessed_pseudogene SERPINA13P 2 OTTHUMG00000150191.3 +22903 chr14 HAVANA gene 94674877 94675829 657.0 - 0 ENSG00000259140.2 processed_pseudogene AL049839.1 1 OTTHUMG00000170862.2 pseudo_consens +22904 chr14 HAVANA gene 94726288 94727175 888.0 + 0 ENSG00000239269.1 processed_pseudogene RPSAP4 1 OTTHUMG00000158121.1 pseudo_consens +22905 chr14 HAVANA gene 94768216 94770230 1264.0 - 0 ENSG00000133937.4 protein_coding GSC 2 OTTHUMG00000170864.3 +22906 chr14 HAVANA gene 94770271 94774858 4588.0 + 0 ENSG00000285205.2 bidirectional_promoter_lncRNA AL121612.2 2 OTTHUMG00000192395.2 +22907 chr14 HAVANA gene 94800849 94801463 615.0 - 0 ENSG00000240914.1 processed_pseudogene RPL15P2 1 OTTHUMG00000158125.1 pseudo_consens +22908 chr14 HAVANA gene 94918253 94918734 482.0 - 0 ENSG00000274379.1 lincRNA AL121612.1 2 OTTHUMG00000170865.1 +22909 chr14 HAVANA gene 94960277 94962976 737.0 - 0 ENSG00000258933.1 lincRNA LINC02279 2 OTTHUMG00000171626.1 +22910 chr14 HAVANA gene 95048220 95050953 465.0 + 0 ENSG00000258866.1 lincRNA AL390254.1 2 OTTHUMG00000171627.1 +22911 chr14 ENSEMBL gene 95137919 95137986 68.0 - 0 ENSG00000264607.1 miRNA MIR3173 3 +22912 chr14 HAVANA gene 95086228 95158010 12294.0 - 0 ENSG00000100697.14 protein_coding DICER1 1 OTTHUMG00000166134.5 ncRNA_host +22913 chr14 HAVANA gene 95157645 95179933 3722.0 + 0 ENSG00000235706.7 antisense DICER1-AS1 1 OTTHUMG00000150190.3 +22914 chr14 HAVANA gene 95185117 95185854 594.0 - 0 ENSG00000259143.1 sense_overlapping AL356017.1 2 OTTHUMG00000171628.1 overlapping_locus +22915 chr14 HAVANA gene 95199039 95199345 181.0 + 0 ENSG00000258615.1 unprocessed_pseudogene AL117187.1 2 OTTHUMG00000171630.1 +22916 chr14 HAVANA gene 95181940 95319906 15701.0 - 0 ENSG00000165959.11 protein_coding CLMN 2 OTTHUMG00000171629.3 overlapping_locus +22917 chr14 HAVANA gene 95329584 95335504 1701.0 + 0 ENSG00000258630.1 lincRNA LINC02292 2 OTTHUMG00000171631.1 +22918 chr14 HAVANA gene 95407266 95475836 18164.0 - 0 ENSG00000176438.12 protein_coding SYNE3 2 OTTHUMG00000171632.4 +22919 chr14 HAVANA gene 95516136 95517911 993.0 + 0 ENSG00000258572.1 lincRNA AL133467.1 2 OTTHUMG00000171637.1 +22920 chr14 ENSEMBL gene 95533355 95533629 275.0 - 0 ENSG00000252481.1 scaRNA SCARNA13 3 +22921 chr14 HAVANA gene 95532297 95534872 1945.0 - 0 ENSG00000247092.6 antisense SNHG10 2 OTTHUMG00000171635.1 ncRNA_host +22922 chr14 HAVANA gene 95533503 95544724 2845.0 + 0 ENSG00000182512.4 protein_coding GLRX5 2 OTTHUMG00000171636.1 +22923 chr14 HAVANA gene 95573562 95581956 1971.0 + 0 ENSG00000258390.1 lincRNA LINC02318 2 OTTHUMG00000171638.1 +22924 chr14 HAVANA gene 95620914 95643285 1714.0 + 0 ENSG00000258927.1 lincRNA AL133467.2 2 OTTHUMG00000171639.1 +22925 chr14 HAVANA gene 95644508 95645232 725.0 + 0 ENSG00000270038.1 lincRNA AL133467.4 2 OTTHUMG00000184114.1 +22926 chr14 ENSEMBL gene 95662480 95662598 119.0 + 0 ENSG00000275033.1 misc_RNA RF02192 3 +22927 chr14 ENSEMBL gene 95670441 95670577 137.0 + 0 ENSG00000277468.1 misc_RNA RF02193 3 +22928 chr14 HAVANA gene 95650498 95679833 10566.0 + 0 ENSG00000187621.14 processed_transcript TCL6 2 OTTHUMG00000149979.2 ncRNA_host,overlapping_locus +22929 chr14 HAVANA gene 95663256 95692630 3672.0 + 0 ENSG00000259084.6 processed_transcript AL133467.3 2 OTTHUMG00000171640.3 ncRNA_host,overlapping_locus +22930 chr14 HAVANA gene 95686417 95692643 1882.0 + 0 ENSG00000213231.12 protein_coding TCL1B 2 OTTHUMG00000028912.5 overlapping_locus +22931 chr14 HAVANA gene 95709967 95714196 2236.0 - 0 ENSG00000100721.10 protein_coding TCL1A 2 OTTHUMG00000171390.2 +22932 chr14 HAVANA gene 95711747 95757656 3017.0 + 0 ENSG00000257275.6 antisense AL139020.1 2 OTTHUMG00000171391.1 +22933 chr14 HAVANA gene 95855548 95866464 865.0 - 0 ENSG00000258516.1 lincRNA AL133167.1 2 OTTHUMG00000171394.1 +22934 chr14 HAVANA gene 95876392 95925571 3478.0 + 0 ENSG00000250366.2 protein_coding TUNAR 2 OTTHUMG00000171392.4 +22935 chr14 HAVANA gene 96019484 96019765 282.0 + 0 ENSG00000271358.1 processed_pseudogene AL137190.1 1 OTTHUMG00000184422.1 pseudo_consens +22936 chr14 HAVANA gene 96039324 96093889 7775.0 + 0 ENSG00000227051.6 protein_coding C14orf132 1 OTTHUMG00000171393.3 +22937 chr14 HAVANA gene 96210860 96214818 460.0 + 0 ENSG00000258412.1 sense_intronic AL355102.1 2 OTTHUMG00000171410.1 overlapping_locus +22938 chr14 HAVANA gene 96223108 96223347 240.0 + 0 ENSG00000258788.3 processed_pseudogene CKS1BP1 1 OTTHUMG00000171411.3 pseudo_consens,overlapping_locus +22939 chr14 HAVANA gene 96233431 96234101 572.0 - 0 ENSG00000259036.1 antisense AL355102.5 2 OTTHUMG00000171395.1 +22940 chr14 HAVANA gene 96204679 96244166 6845.0 + 0 ENSG00000168398.6 protein_coding BDKRB2 2 OTTHUMG00000171408.1 overlapping_locus +22941 chr14 HAVANA gene 96204844 96263929 855.0 + 0 ENSG00000258691.1 protein_coding AL355102.2 1 OTTHUMG00000171409.1 overlapping_locus +22942 chr14 HAVANA gene 96259411 96268624 738.0 - 0 ENSG00000258793.1 antisense AL355102.4 2 OTTHUMG00000171397.1 +22943 chr14 HAVANA gene 96255824 96268967 2758.0 + 0 ENSG00000100739.10 protein_coding BDKRB1 2 OTTHUMG00000171412.1 overlapping_locus +22944 chr14 HAVANA gene 96275046 96276723 1678.0 - 0 ENSG00000258729.2 lincRNA AL355102.3 2 OTTHUMG00000171413.1 +22945 chr14 HAVANA gene 96279202 96363870 14778.0 - 0 ENSG00000066739.11 protein_coding ATG2B 1 OTTHUMG00000149933.3 +22946 chr14 ENSEMBL gene 96384624 96384815 192.0 + 0 ENSG00000222276.1 snRNA RNU2-33P 3 +22947 chr14 HAVANA gene 96363452 96387288 4567.0 + 0 ENSG00000100744.14 protein_coding GSKIP 2 OTTHUMG00000171420.2 ncRNA_host +22948 chr14 HAVANA gene 96423700 96424209 510.0 - 0 ENSG00000259059.1 processed_pseudogene PEBP1P1 1 OTTHUMG00000171438.1 pseudo_consens +22949 chr14 HAVANA gene 96456576 96457041 466.0 - 0 ENSG00000240051.1 processed_pseudogene RPL23AP10 1 OTTHUMG00000158127.1 pseudo_consens +22950 chr14 HAVANA gene 96392111 96489427 5001.0 + 0 ENSG00000140057.8 protein_coding AK7 2 OTTHUMG00000171421.1 +22951 chr14 HAVANA gene 96500810 96502321 1512.0 - 0 ENSG00000260806.1 antisense AL163051.1 2 OTTHUMG00000171440.1 +22952 chr14 HAVANA gene 96537170 96537904 735.0 + 0 ENSG00000276182.1 sense_intronic AL163051.2 2 OTTHUMG00000188628.1 +22953 chr14 HAVANA gene 96501433 96567111 12766.0 + 0 ENSG00000090060.17 protein_coding PAPOLA 1 OTTHUMG00000171441.4 +22954 chr14 HAVANA gene 96592733 96595763 3031.0 + 0 ENSG00000258702.2 processed_transcript AL137786.1 2 OTTHUMG00000171454.2 +22955 chr14 ENSEMBL gene 96638187 96638514 328.0 - 0 ENSG00000223299.1 misc_RNA RN7SKP108 3 +22956 chr14 HAVANA gene 96738021 96790637 608.0 + 0 ENSG00000258979.2 lincRNA LINC02299 2 OTTHUMG00000171455.3 +22957 chr14 HAVANA gene 96797304 96931722 2744.0 + 0 ENSG00000100749.7 protein_coding VRK1 2 OTTHUMG00000171459.1 overlapping_locus +22958 chr14 HAVANA gene 96931367 96945394 700.0 + 0 ENSG00000225163.4 sense_overlapping LINC00618 2 OTTHUMG00000171460.2 overlapping_locus +22959 chr14 HAVANA gene 96992864 96996601 3738.0 + 0 ENSG00000280070.1 TEC AL049833.3 2 OTTHUMG00000173003.1 +22960 chr14 HAVANA gene 97110416 97119247 1274.0 - 0 ENSG00000259026.1 lincRNA AL049833.2 2 OTTHUMG00000171462.1 +22961 chr14 HAVANA gene 97116355 97121501 840.0 + 0 ENSG00000258393.1 lincRNA AL049833.1 2 OTTHUMG00000171463.1 +22962 chr14 HAVANA gene 97154857 97158736 445.0 + 0 ENSG00000259110.1 lincRNA LINC02304 2 OTTHUMG00000171464.1 +22963 chr14 HAVANA gene 97180525 97217778 1320.0 + 0 ENSG00000285584.1 lincRNA AL158800.1 2 OTTHUMG00000192791.1 +22964 chr14 HAVANA gene 97458816 97581601 2014.0 + 0 ENSG00000246084.2 lincRNA LINC02325 2 OTTHUMG00000171465.1 +22965 chr14 HAVANA gene 97632647 97686658 1938.0 - 0 ENSG00000197176.7 lincRNA LINC02291 2 OTTHUMG00000171466.2 +22966 chr14 HAVANA gene 97749264 97763989 3104.0 - 0 ENSG00000258869.1 lincRNA LINC02312 1 OTTHUMG00000171468.1 +22967 chr14 HAVANA gene 97786565 97789256 539.0 - 0 ENSG00000258379.1 lincRNA AL355097.1 2 OTTHUMG00000171469.1 +22968 chr14 HAVANA gene 97925610 97978124 5850.0 - 0 ENSG00000246223.8 lincRNA LINC01550 1 OTTHUMG00000171470.2 +22969 chr14 HAVANA gene 98136074 98139242 374.0 + 0 ENSG00000258511.1 lincRNA LINC02295 2 OTTHUMG00000171472.1 +22970 chr14 HAVANA gene 98068240 98205143 542.0 - 0 ENSG00000259097.1 lincRNA AL163932.1 2 OTTHUMG00000171471.1 +22971 chr14 ENSEMBL gene 98351367 98351664 298.0 - 0 ENSG00000241757.3 misc_RNA RN7SL714P 3 +22972 chr14 HAVANA gene 98497132 98514798 423.0 + 0 ENSG00000258795.1 lincRNA AL132719.1 2 OTTHUMG00000171473.1 +22973 chr14 HAVANA gene 98711613 98717766 1421.0 + 0 ENSG00000176605.8 protein_coding C14orf177 2 OTTHUMG00000167745.3 +22974 chr14 HAVANA gene 98844896 98845597 479.0 + 0 ENSG00000237342.1 lincRNA AL132796.1 2 OTTHUMG00000150113.1 +22975 chr14 HAVANA gene 98916902 98917801 900.0 - 0 ENSG00000278990.1 TEC AL132796.3 2 OTTHUMG00000173004.1 +22976 chr14 HAVANA gene 98925137 98927805 1851.0 - 0 ENSG00000259119.1 lincRNA AL132796.2 2 OTTHUMG00000171474.1 +22977 chr14 HAVANA gene 98972879 98973301 423.0 - 0 ENSG00000232573.1 processed_pseudogene RPL3P4 1 OTTHUMG00000028964.2 pseudo_consens +22978 chr14 HAVANA gene 98973314 98973471 158.0 + 0 ENSG00000234648.1 processed_pseudogene AL162151.2 2 OTTHUMG00000060744.1 +22979 chr14 HAVANA gene 99158416 99159669 561.0 + 0 ENSG00000229402.1 antisense AL162151.1 1 OTTHUMG00000150114.1 +22980 chr14 HAVANA gene 99262948 99264735 564.0 + 0 ENSG00000235785.1 antisense AL109767.1 1 OTTHUMG00000150112.1 +22981 chr14 HAVANA gene 99169287 99271524 7855.0 - 0 ENSG00000127152.17 protein_coding BCL11B 2 OTTHUMG00000028967.3 +22982 chr14 HAVANA gene 99324799 99332015 208.0 - 0 ENSG00000258383.1 lincRNA AL132819.1 2 OTTHUMG00000171475.1 +22983 chr14 ENSEMBL gene 99444306 99444412 107.0 + 0 ENSG00000272439.1 snRNA RNU6-91P 3 +22984 chr14 HAVANA gene 99397746 99480889 5188.0 - 0 ENSG00000183576.12 protein_coding SETD3 2 OTTHUMG00000028970.6 +22985 chr14 HAVANA gene 99512501 99513576 889.0 + 0 ENSG00000258749.1 antisense AL110504.1 2 OTTHUMG00000171507.1 overlapping_locus +22986 chr14 HAVANA gene 99481169 99535044 8220.0 + 0 ENSG00000090061.17 protein_coding CCNK 2 OTTHUMG00000171495.2 overlapping_locus +22987 chr14 ENSEMBL gene 99583017 99583118 102.0 + 0 ENSG00000200506.1 misc_RNA RF00019 3 +22988 chr14 HAVANA gene 99500180 99604026 17449.0 - 0 ENSG00000205476.8 protein_coding CCDC85C 2 OTTHUMG00000171506.3 +22989 chr14 HAVANA gene 99604556 99625740 1039.0 + 0 ENSG00000247970.2 lincRNA AL160313.1 2 OTTHUMG00000171508.1 +22990 chr14 HAVANA gene 99645110 99680569 7836.0 + 0 ENSG00000182218.9 protein_coding HHIPL1 2 OTTHUMG00000171509.1 +22991 chr14 HAVANA gene 99691445 99693648 493.0 - 0 ENSG00000258672.1 lincRNA AL160313.2 2 OTTHUMG00000171511.1 +22992 chr14 HAVANA gene 99684304 99727301 9352.0 + 0 ENSG00000036530.8 protein_coding CYP46A1 1 OTTHUMG00000171510.2 +22993 chr14 HAVANA gene 99737693 99942060 8899.0 + 0 ENSG00000066629.17 protein_coding EML1 1 OTTHUMG00000171529.4 +22994 chr14 ENSEMBL gene 99945315 99945477 163.0 + 0 ENSG00000199836.1 snRNA RNU1-47P 3 +22995 chr14 HAVANA gene 99964529 99965378 850.0 + 0 ENSG00000271198.1 processed_pseudogene VDAC3P1 1 OTTHUMG00000184603.1 pseudo_consens +22996 chr14 HAVANA gene 99974336 99975149 814.0 - 0 ENSG00000242888.1 processed_pseudogene AL133368.1 1 OTTHUMG00000158132.1 pseudo_consens +22997 chr14 HAVANA gene 99977115 99978098 386.0 - 0 ENSG00000258693.1 lincRNA AL133368.2 2 OTTHUMG00000171531.1 +22998 chr14 HAVANA gene 100052803 100074878 548.0 - 0 ENSG00000258560.1 antisense AL157912.1 2 OTTHUMG00000171536.2 +22999 chr14 ENSEMBL gene 100109419 100109514 96.0 - 0 ENSG00000265154.1 miRNA MIR151B 3 +23000 chr14 ENSEMBL gene 100109655 100109753 99.0 + 0 ENSG00000199082.1 miRNA MIR342 3 +23001 chr14 HAVANA gene 99971449 100144236 10621.0 + 0 ENSG00000196405.12 protein_coding EVL 1 OTTHUMG00000171530.3 ncRNA_host +23002 chr14 HAVANA gene 100143957 100160163 4466.0 - 0 ENSG00000168350.7 protein_coding DEGS2 1 OTTHUMG00000171537.2 +23003 chr14 HAVANA gene 100207407 100238555 331.0 - 0 ENSG00000258982.1 antisense AL133523.1 2 OTTHUMG00000171545.1 +23004 chr14 HAVANA gene 100263781 100265405 533.0 + 0 ENSG00000258904.1 sense_intronic AL157871.5 2 OTTHUMG00000171546.1 overlapping_locus +23005 chr14 ENSEMBL gene 100277357 100277417 61.0 + 0 ENSG00000283840.1 miRNA MIR6764 3 +23006 chr14 HAVANA gene 100238298 100282792 8720.0 + 0 ENSG00000100811.12 protein_coding YY1 1 OTTHUMG00000150479.4 ncRNA_host,overlapping_locus +23007 chr14 HAVANA gene 100279959 100291456 206.0 - 0 ENSG00000259052.1 sense_overlapping AL157871.6 2 OTTHUMG00000029016.3 overlapping_locus +23008 chr14 HAVANA gene 100291117 100294656 693.0 + 0 ENSG00000258504.2 lincRNA AL157871.1 2 OTTHUMG00000171570.1 +23009 chr14 HAVANA gene 100291111 100306547 7451.0 - 0 ENSG00000197119.12 protein_coding SLC25A29 1 OTTHUMG00000171569.4 overlapping_locus +23010 chr14 ENSEMBL gene 100307859 100307956 98.0 + 0 ENSG00000198984.1 miRNA MIR345 3 +23011 chr14 ENSEMBL gene 100319073 100319370 298.0 - 0 ENSG00000243976.2 misc_RNA RN7SL523P 3 +23012 chr14 HAVANA gene 100323337 100330378 1799.0 + 0 ENSG00000140107.10 protein_coding SLC25A47 2 OTTHUMG00000171571.1 +23013 chr14 HAVANA gene 100339832 100340554 552.0 + 0 ENSG00000258521.1 antisense AL157871.2 2 OTTHUMG00000171583.1 overlapping_locus +23014 chr14 HAVANA gene 100333790 100354061 385.0 + 0 ENSG00000258666.1 antisense AL157871.4 2 OTTHUMG00000171582.1 overlapping_locus +23015 chr14 HAVANA gene 100366628 100366920 293.0 + 0 ENSG00000258581.2 processed_pseudogene AL157871.3 1 OTTHUMG00000171584.2 pseudo_consens +23016 chr14 HAVANA gene 100333788 100376805 6358.0 - 0 ENSG00000140105.17 protein_coding WARS 1 OTTHUMG00000171572.3 +23017 chr14 HAVANA gene 100406599 100407613 606.0 + 0 ENSG00000258620.1 sense_intronic AL135838.1 2 OTTHUMG00000171586.1 overlapping_locus +23018 chr14 HAVANA gene 100480952 100481274 323.0 + 0 ENSG00000258500.2 transcribed_processed_pseudogene AL845552.1 1 OTTHUMG00000171588.2 pseudo_consens,overlapping_locus +23019 chr14 ENSEMBL gene 100487544 100487787 244.0 + 0 ENSG00000253075.1 misc_RNA RN7SKP92 3 +23020 chr14 HAVANA gene 100376418 100530303 4218.0 + 0 ENSG00000176473.13 protein_coding WDR25 2 OTTHUMG00000171585.1 ncRNA_host,overlapping_locus +23021 chr14 HAVANA gene 100538939 100540409 553.0 + 0 ENSG00000259031.1 lincRNA AL845552.2 2 OTTHUMG00000171590.1 +23022 chr14 HAVANA gene 100537147 100587413 7878.0 - 0 ENSG00000183092.16 protein_coding BEGAIN 2 OTTHUMG00000171589.3 +23023 chr14 HAVANA gene 100587775 100589326 466.0 - 0 ENSG00000258576.1 sense_overlapping AL163974.1 2 OTTHUMG00000171591.1 +23024 chr14 HAVANA gene 100657250 100676069 3311.0 + 0 ENSG00000196273.7 lincRNA LINC00523 2 OTTHUMG00000171592.1 +23025 chr14 HAVANA gene 100675930 100679884 722.0 - 0 ENSG00000258717.1 lincRNA AL132711.1 2 OTTHUMG00000171593.1 +23026 chr14 HAVANA gene 100725705 100738224 5312.0 + 0 ENSG00000185559.14 protein_coding DLK1 2 OTTHUMG00000171600.4 +23027 chr14 ENSEMBL gene 100814491 100814574 84.0 + 0 ENSG00000266461.1 miRNA MIR2392 3 +23028 chr14 ENSEMBL gene 100816041 100816244 204.0 + 0 ENSG00000275161.1 misc_RNA RF01928 3 +23029 chr14 ENSEMBL gene 100826284 100826370 87.0 + 0 ENSG00000274884.1 misc_RNA AL117190.3 3 +23030 chr14 ENSEMBL gene 100829350 100829454 105.0 + 0 ENSG00000276919.1 misc_RNA RF01872 3 +23031 chr14 ENSEMBL gene 100852390 100852487 98.0 + 0 ENSG00000211574.1 miRNA MIR770 3 +23032 chr14 HAVANA gene 100834432 100861026 289.0 - 0 ENSG00000258663.1 antisense AL117190.2 2 OTTHUMG00000171671.1 +23033 chr14 HAVANA gene 100779410 100861031 15769.0 + 0 ENSG00000214548.16 lincRNA MEG3 1 OTTHUMG00000029052.13 ncRNA_host,overlapping_locus +23034 chr14 ENSEMBL gene 100869060 100869148 89.0 + 0 ENSG00000207989.3 miRNA MIR493 3 +23035 chr14 ENSEMBL gene 100874493 100874585 93.0 + 0 ENSG00000199151.3 miRNA MIR337 3 +23036 chr14 ENSEMBL gene 100875033 100875104 72.0 + 0 ENSG00000283159.1 miRNA MIR665 3 +23037 chr14 ENSEMBL gene 100881007 100881120 114.0 + 0 ENSG00000208001.1 miRNA MIR431 3 +23038 chr14 ENSEMBL gene 100881886 100881978 93.0 + 0 ENSG00000207569.2 miRNA MIR433 3 +23039 chr14 ENSEMBL gene 100882979 100883075 97.0 + 0 ENSG00000207608.3 miRNA MIR127 3 +23040 chr14 ENSEMBL gene 100884483 100884576 94.0 + 0 ENSG00000272458.1 miRNA MIR432 3 +23041 chr14 ENSEMBL gene 100884702 100884783 82.0 + 0 ENSG00000207942.2 miRNA MIR136 3 +23042 chr14 ENSEMBL gene 100894817 100894913 97.0 + 0 ENSG00000276225.1 misc_RNA RF02145 3 +23043 chr14 ENSEMBL gene 100897920 100897996 77.0 + 0 ENSG00000275662.1 snoRNA SNORD112 3 +23044 chr14 ENSEMBL gene 100898958 100899079 122.0 + 0 ENSG00000275134.1 misc_RNA RF02146 3 +23045 chr14 HAVANA gene 100879753 100903722 5398.0 - 0 ENSG00000254656.2 protein_coding RTL1 2 OTTHUMG00000167573.2 +23046 chr14 ENSEMBL gene 100911139 100911213 75.0 + 0 ENSG00000199005.4 miRNA MIR370 3 +23047 chr14 ENSEMBL gene 100924824 100924892 69.0 + 0 ENSG00000202191.1 snoRNA SNORD113-1 3 +23048 chr14 ENSEMBL gene 100927342 100927413 72.0 + 0 ENSG00000212384.1 snoRNA SNORD113-2 3 +23049 chr14 ENSEMBL gene 100929919 100929990 72.0 + 0 ENSG00000201700.3 snoRNA SNORD113-3 3 +23050 chr14 ENSEMBL gene 100936491 100936565 75.0 + 0 ENSG00000201672.1 snoRNA SNORD113-4 3 +23051 chr14 ENSEMBL gene 100938187 100938264 78.0 + 0 ENSG00000272474.1 snoRNA SNORD113-5 3 +23052 chr14 ENSEMBL gene 100939556 100939630 75.0 + 0 ENSG00000200215.3 snoRNA SNORD113-6 3 +23053 chr14 ENSEMBL gene 100941126 100941202 77.0 + 0 ENSG00000200632.1 snoRNA SNORD113-7 3 +23054 chr14 ENSEMBL gene 100943451 100943524 74.0 + 0 ENSG00000200367.1 snoRNA SNORD113-8 3 +23055 chr14 ENSEMBL gene 100945649 100945720 72.0 + 0 ENSG00000201950.1 snoRNA SNORD113-9 3 +23056 chr14 HAVANA gene 100836269 100947194 1985.0 + 0 ENSG00000258399.7 lincRNA AL117190.1 2 OTTHUMG00000184365.3 ncRNA_host,overlapping_locus +23057 chr14 ENSEMBL gene 100949833 100949904 72.0 + 0 ENSG00000199575.1 snoRNA SNORD114-1 3 +23058 chr14 ENSEMBL gene 100951856 100951933 78.0 + 0 ENSG00000200823.1 snoRNA SNORD114-2 3 +23059 chr14 ENSEMBL gene 100953349 100953423 75.0 + 0 ENSG00000201839.1 snoRNA SNORD114-3 3 +23060 chr14 ENSEMBL gene 100954374 100954448 75.0 + 0 ENSG00000200832.1 snoRNA SNORD114-4 3 +23061 chr14 ENSEMBL gene 100955370 100955439 70.0 + 0 ENSG00000199798.1 snoRNA SNORD114-5 3 +23062 chr14 ENSEMBL gene 100956240 100956312 73.0 + 0 ENSG00000200150.1 snoRNA RF00181 3 +23063 chr14 ENSEMBL gene 100957166 100957237 72.0 + 0 ENSG00000201263.1 snoRNA SNORD114-6 3 +23064 chr14 ENSEMBL gene 100963054 100963130 77.0 + 0 ENSG00000199390.1 snoRNA SNORD114-7 3 +23065 chr14 ENSEMBL gene 100966029 100966100 72.0 + 0 ENSG00000201240.1 snoRNA SNORD114-9 3 +23066 chr14 ENSEMBL gene 100967052 100967123 72.0 + 0 ENSG00000200279.1 snoRNA SNORD114-10 3 +23067 chr14 ENSEMBL gene 100968111 100968185 75.0 + 0 ENSG00000200608.1 snoRNA SNORD114-11 3 +23068 chr14 ENSEMBL gene 100968948 100969022 75.0 + 0 ENSG00000202270.1 snoRNA SNORD114-12 3 +23069 chr14 ENSEMBL gene 100969879 100969952 74.0 + 0 ENSG00000201247.1 snoRNA SNORD114-13 3 +23070 chr14 ENSEMBL gene 100972103 100972177 75.0 + 0 ENSG00000199593.1 snoRNA SNORD114-14 3 +23071 chr14 ENSEMBL gene 100972670 100972741 72.0 + 0 ENSG00000201557.1 snoRNA SNORD114-15 3 +23072 chr14 ENSEMBL gene 100973595 100973664 70.0 + 0 ENSG00000199914.1 snoRNA SNORD114-16 3 +23073 chr14 ENSEMBL gene 100974806 100974880 75.0 + 0 ENSG00000201569.1 snoRNA SNORD114-17 3 +23074 chr14 ENSEMBL gene 100975825 100975896 72.0 + 0 ENSG00000202142.1 snoRNA SNORD114-18 3 +23075 chr14 ENSEMBL gene 100976477 100976551 75.0 + 0 ENSG00000199942.1 snoRNA SNORD114-19 3 +23076 chr14 ENSEMBL gene 100977389 100977466 78.0 + 0 ENSG00000201500.1 snoRNA RF00181 3 +23077 chr14 ENSEMBL gene 100979002 100979090 89.0 + 0 ENSG00000201036.1 snoRNA RF00181 3 +23078 chr14 ENSEMBL gene 100979992 100980066 75.0 + 0 ENSG00000201710.1 snoRNA RF00181 3 +23079 chr14 ENSEMBL gene 100981004 100981075 72.0 + 0 ENSG00000202048.1 snoRNA SNORD114-20 3 +23080 chr14 ENSEMBL gene 100981975 100982046 72.0 + 0 ENSG00000272344.1 snoRNA SNORD114-21 3 +23081 chr14 ENSEMBL gene 100982926 100982997 72.0 + 0 ENSG00000202293.1 snoRNA SNORD114-22 3 +23082 chr14 ENSEMBL gene 100983876 100983947 72.0 + 0 ENSG00000200406.1 snoRNA SNORD114-23 3 +23083 chr14 ENSEMBL gene 100984777 100984848 72.0 + 0 ENSG00000201899.1 snoRNA SNORD114-24 3 +23084 chr14 ENSEMBL gene 100986057 100986128 72.0 + 0 ENSG00000200612.1 snoRNA SNORD114-25 3 +23085 chr14 ENSEMBL gene 100987046 100987117 72.0 + 0 ENSG00000200413.1 snoRNA SNORD114-26 3 +23086 chr14 ENSEMBL gene 100988161 100988230 70.0 + 0 ENSG00000200636.1 snoRNA SNORD114-27 3 +23087 chr14 ENSEMBL gene 100989130 100989201 72.0 + 0 ENSG00000200480.1 snoRNA SNORD114-28 3 +23088 chr14 ENSEMBL gene 100990091 100990160 70.0 + 0 ENSG00000201689.1 snoRNA SNORD114-29 3 +23089 chr14 ENSEMBL gene 100991919 100991990 72.0 + 0 ENSG00000201318.1 snoRNA SNORD114-30 3 +23090 chr14 ENSEMBL gene 100993236 100993310 75.0 + 0 ENSG00000200089.1 snoRNA SNORD114-31 3 +23091 chr14 ENSEMBL gene 100994257 100994330 74.0 + 0 ENSG00000222095.1 snoRNA RF00181 3 +23092 chr14 ENSEMBL gene 100998467 100998541 75.0 + 0 ENSG00000222185.1 snoRNA RF00181 3 +23093 chr14 ENSEMBL gene 101022066 101022132 67.0 + 0 ENSG00000199088.5 miRNA MIR379 3 +23094 chr14 ENSEMBL gene 101023325 101023420 96.0 + 0 ENSG00000199109.4 miRNA MIR411 3 +23095 chr14 ENSEMBL gene 101023794 101023856 63.0 + 0 ENSG00000207749.4 miRNA MIR299 3 +23096 chr14 ENSEMBL gene 101025017 101025077 61.0 + 0 ENSG00000198982.4 miRNA MIR380 3 +23097 chr14 ENSEMBL gene 101025564 101025651 88.0 + 0 ENSG00000221745.3 miRNA MIR1197 3 +23098 chr14 ENSEMBL gene 101025732 101025817 86.0 + 0 ENSG00000199069.3 miRNA MIR323A 3 +23099 chr14 ENSEMBL gene 101026020 101026107 88.0 + 0 ENSG00000211582.1 miRNA MIR758 3 +23100 chr14 ENSEMBL gene 101026785 101026864 80.0 + 0 ENSG00000207761.3 miRNA MIR329-1 3 +23101 chr14 ENSEMBL gene 101027100 101027183 84.0 + 0 ENSG00000207762.1 miRNA MIR329-2 3 +23102 chr14 ENSEMBL gene 101029634 101029714 81.0 + 0 ENSG00000194717.4 miRNA MIR494 3 +23103 chr14 ENSEMBL gene 101030052 101030129 78.0 + 0 ENSG00000221036.5 miRNA MIR1193 3 +23104 chr14 ENSEMBL gene 101031987 101032064 78.0 + 0 ENSG00000212040.3 miRNA MIR543 3 +23105 chr14 ENSEMBL gene 101033755 101033836 82.0 + 0 ENSG00000207743.3 miRNA MIR495 3 +23106 chr14 HAVANA gene 100894770 101038859 11109.0 + 0 ENSG00000225746.11 lincRNA MEG8 1 OTTHUMG00000029060.6 ncRNA_host,overlapping_locus +23107 chr14 ENSEMBL gene 101039690 101039755 66.0 + 0 ENSG00000283279.1 miRNA MIR376C 3 +23108 chr14 ENSEMBL gene 101040069 101040148 80.0 + 0 ENSG00000283561.1 miRNA MIR376A2 3 +23109 chr14 ENSEMBL gene 101040219 101040299 81.0 + 0 ENSG00000207934.1 miRNA MIR654 3 +23110 chr14 ENSEMBL gene 101040436 101040535 100.0 + 0 ENSG00000283556.1 miRNA MIR376B 3 +23111 chr14 ENSEMBL gene 101040782 101040849 68.0 + 0 ENSG00000283588.1 miRNA MIR376A1 3 +23112 chr14 ENSEMBL gene 101041363 101041445 83.0 + 0 ENSG00000215957.1 miRNA MIR300 3 +23113 chr14 ENSEMBL gene 101042977 101043062 86.0 + 0 ENSG00000221525.1 miRNA MIR1185-1 3 +23114 chr14 ENSEMBL gene 101044198 101044283 86.0 + 0 ENSG00000221614.1 miRNA MIR1185-2 3 +23115 chr14 ENSEMBL gene 101045920 101045994 75.0 + 0 ENSG00000199020.3 miRNA MIR381 3 +23116 chr14 ENSEMBL gene 101046455 101046538 84.0 + 0 ENSG00000207754.3 miRNA MIR487B 3 +23117 chr14 ENSEMBL gene 101047321 101047398 78.0 + 0 ENSG00000202560.4 miRNA MIR539 3 +23118 chr14 ENSEMBL gene 101047901 101047979 79.0 + 0 ENSG00000216099.3 miRNA MIR889 3 +23119 chr14 ENSEMBL gene 101048658 101048748 91.0 + 0 ENSG00000207587.1 miRNA MIR544A 3 +23120 chr14 ENSEMBL gene 101049550 101049646 97.0 + 0 ENSG00000207646.1 miRNA MIR655 3 +23121 chr14 HAVANA gene 101045157 101051795 425.0 + 0 ENSG00000258861.1 lincRNA MIR381HG 2 OTTHUMG00000171633.1 ncRNA_host +23122 chr14 ENSEMBL gene 101052446 101052525 80.0 + 0 ENSG00000207742.3 miRNA MIR487A 3 +23123 chr14 ENSEMBL gene 101054306 101054381 76.0 + 0 ENSG00000283170.1 miRNA MIR382 3 +23124 chr14 ENSEMBL gene 101054687 101054759 73.0 + 0 ENSG00000207993.3 miRNA MIR134 3 +23125 chr14 ENSEMBL gene 101055258 101055323 66.0 + 0 ENSG00000276352.2 miRNA MIR668 3 +23126 chr14 ENSEMBL gene 101055419 101055491 73.0 + 0 ENSG00000208027.4 miRNA MIR485 3 +23127 chr14 ENSEMBL gene 101056219 101056300 82.0 + 0 ENSG00000208004.2 miRNA MIR323B 3 +23128 chr14 ENSEMBL gene 101059755 101059838 84.0 + 0 ENSG00000207978.1 miRNA MIR154 3 +23129 chr14 ENSEMBL gene 101060573 101060674 102.0 + 0 ENSG00000207961.3 miRNA MIR496 3 +23130 chr14 ENSEMBL gene 101062050 101062118 69.0 + 0 ENSG00000199015.4 miRNA MIR377 3 +23131 chr14 ENSEMBL gene 101064495 101064578 84.0 + 0 ENSG00000216179.1 miRNA MIR541 3 +23132 chr14 ENSEMBL gene 101065300 101065378 79.0 + 0 ENSG00000199107.3 miRNA MIR409 3 +23133 chr14 ENSEMBL gene 101065447 101065537 91.0 + 0 ENSG00000199012.2 miRNA MIR412 3 +23134 chr14 ENSEMBL gene 101065598 101065667 70.0 + 0 ENSG00000199025.4 miRNA MIR369 3 +23135 chr14 ENSEMBL gene 101065912 101065991 80.0 + 0 ENSG00000199092.4 miRNA MIR410 3 +23136 chr14 ENSEMBL gene 101066724 101066801 78.0 + 0 ENSG00000207959.1 miRNA MIR656 3 +23137 chr14 HAVANA gene 101064151 101072937 3212.0 + 0 ENSG00000223403.4 lincRNA MEG9 2 OTTHUMG00000029067.4 ncRNA_host +23138 chr14 HAVANA gene 101073869 101077910 1283.0 - 0 ENSG00000230805.6 lincRNA AL132709.1 2 OTTHUMG00000045024.2 +23139 chr14 HAVANA gene 101120856 101123542 943.0 + 0 ENSG00000259004.1 lincRNA LINC02285 2 OTTHUMG00000171672.1 +23140 chr14 ENSEMBL gene 101145480 101145695 216.0 - 0 ENSG00000277754.1 snoRNA RF00012 3 +23141 chr14 HAVANA gene 101217372 101218241 870.0 - 0 ENSG00000258681.1 processed_pseudogene AL355836.1 1 OTTHUMG00000171673.1 pseudo_consens +23142 chr14 HAVANA gene 101257332 101278318 2490.0 + 0 ENSG00000258497.1 lincRNA AL359682.1 2 OTTHUMG00000171674.1 +23143 chr14 HAVANA gene 101332516 101334331 447.0 - 0 ENSG00000258460.1 lincRNA AL355096.1 2 OTTHUMG00000171678.1 +23144 chr14 HAVANA gene 101405987 101407922 418.0 - 0 ENSG00000259023.2 lincRNA LINC00524 2 OTTHUMG00000171679.1 +23145 chr14 HAVANA gene 101442076 101444315 516.0 + 0 ENSG00000259082.1 lincRNA LINC02314 2 OTTHUMG00000171680.1 +23146 chr14 HAVANA gene 101447642 101457117 513.0 + 0 ENSG00000259166.1 lincRNA AL049836.2 2 OTTHUMG00000171681.1 +23147 chr14 ENSEMBL gene 101560287 101560422 136.0 - 0 ENSG00000283857.1 miRNA MIR1247 3 +23148 chr14 HAVANA gene 101552221 101560431 5603.0 - 0 ENSG00000258498.8 lincRNA DIO3OS 2 OTTHUMG00000171682.1 ncRNA_host +23149 chr14 HAVANA gene 101561351 101563452 2102.0 + 0 ENSG00000197406.7 protein_coding DIO3 2 OTTHUMG00000160681.4 retrogene +23150 chr14 HAVANA gene 101628984 101632530 539.0 - 0 ENSG00000258919.1 lincRNA AL049836.1 2 OTTHUMG00000171690.1 +23151 chr14 HAVANA gene 101677943 101678380 438.0 + 0 ENSG00000241494.1 processed_pseudogene AL355032.1 1 OTTHUMG00000158133.1 pseudo_consens +23152 chr14 HAVANA gene 101634454 101731108 454.0 - 0 ENSG00000258404.1 lincRNA LINC02320 2 OTTHUMG00000171691.2 +23153 chr14 HAVANA gene 101730437 101732522 639.0 + 0 ENSG00000258512.1 lincRNA LINC00239 1 OTTHUMG00000171596.1 +23154 chr14 ENSEMBL gene 101803227 101803331 105.0 + 0 ENSG00000207208.1 snRNA RNU6-790P 3 +23155 chr14 HAVANA gene 101796555 101810321 448.0 - 0 ENSG00000259088.1 antisense AL137779.2 2 OTTHUMG00000171598.1 +23156 chr14 HAVANA gene 101833435 101839531 599.0 - 0 ENSG00000256705.3 antisense AL137779.1 2 OTTHUMG00000171599.1 +23157 chr14 HAVANA gene 101843394 101844122 729.0 - 0 ENSG00000259161.2 processed_pseudogene AL137779.3 1 OTTHUMG00000171643.2 pseudo_consens +23158 chr14 HAVANA gene 101761798 101927989 14289.0 + 0 ENSG00000078304.19 protein_coding PPP2R5C 1 OTTHUMG00000171597.8 ncRNA_host +23159 chr14 HAVANA gene 101948347 101949425 1079.0 + 0 ENSG00000271780.1 lincRNA AL118558.3 2 OTTHUMG00000185362.1 +23160 chr14 HAVANA gene 101952416 101953063 648.0 + 0 ENSG00000272444.1 lincRNA AL118558.4 2 OTTHUMG00000185363.1 +23161 chr14 HAVANA gene 101969364 101969601 238.0 - 0 ENSG00000259013.2 processed_pseudogene AL118558.2 1 OTTHUMG00000171645.2 pseudo_consens +23162 chr14 HAVANA gene 101964510 102056443 36852.0 + 0 ENSG00000197102.11 protein_coding DYNC1H1 1 OTTHUMG00000171644.10 +23163 chr14 HAVANA gene 102036315 102066228 1240.0 - 0 ENSG00000258959.2 transcribed_unitary_pseudogene AL118558.1 2 OTTHUMG00000171646.3 +23164 chr14 ENSEMBL gene 102077180 102077472 293.0 - 0 ENSG00000240457.3 misc_RNA RN7SL472P 3 +23165 chr14 HAVANA gene 102080738 102139699 5248.0 - 0 ENSG00000080824.18 protein_coding HSP90AA1 2 OTTHUMG00000171752.7 +23166 chr14 HAVANA gene 102139503 102224847 7328.0 + 0 ENSG00000140153.17 protein_coding WDR20 1 OTTHUMG00000171753.6 +23167 chr14 HAVANA gene 102224500 102305200 10996.0 - 0 ENSG00000080823.22 protein_coding MOK 1 OTTHUMG00000164896.8 +23168 chr14 HAVANA gene 102317377 102342702 5590.0 + 0 ENSG00000022976.15 protein_coding ZNF839 1 OTTHUMG00000171864.4 +23169 chr14 HAVANA gene 102341102 102362916 5344.0 - 0 ENSG00000100865.14 protein_coding CINP 2 OTTHUMG00000171775.3 +23170 chr14 ENSEMBL gene 102501676 102501779 104.0 + 0 ENSG00000212330.1 snRNA RNU6-244P 3 +23171 chr14 HAVANA gene 102362963 102502481 9384.0 + 0 ENSG00000196663.15 protein_coding TECPR2 2 OTTHUMG00000171776.2 ncRNA_host +23172 chr14 HAVANA gene 102501760 102509799 7215.0 - 0 ENSG00000156381.8 protein_coding ANKRD9 2 OTTHUMG00000171777.5 +23173 chr14 ENSEMBL gene 102539644 102539726 83.0 + 0 ENSG00000266015.1 miRNA MIR4309 3 +23174 chr14 HAVANA gene 102545254 102555826 1603.0 + 0 ENSG00000259230.1 lincRNA LINC02323 2 OTTHUMG00000171913.1 +23175 chr14 ENSEMBL gene 102582888 102583177 290.0 - 0 ENSG00000239224.3 misc_RNA RN7SL546P 3 +23176 chr14 HAVANA gene 102662240 102662708 469.0 - 0 ENSG00000230988.3 processed_pseudogene RPL23AP11 1 OTTHUMG00000158134.1 pseudo_consens +23177 chr14 ENSEMBL gene 102695388 102695495 108.0 + 0 ENSG00000202459.1 misc_RNA RF00019 3 +23178 chr14 HAVANA gene 102592661 102730576 6202.0 + 0 ENSG00000089902.9 protein_coding RCOR1 2 OTTHUMG00000171778.4 ncRNA_host +23179 chr14 HAVANA gene 102770040 102774791 1006.0 - 0 ENSG00000259508.1 lincRNA AL132801.1 2 OTTHUMG00000171914.1 +23180 chr14 ENSEMBL gene 102865856 102865963 108.0 + 0 ENSG00000206969.1 snRNA RNU6-1316P 3 +23181 chr14 HAVANA gene 102777476 102911500 8263.0 + 0 ENSG00000131323.14 protein_coding TRAF3 1 OTTHUMG00000171902.2 ncRNA_host +23182 chr14 HAVANA gene 102922656 102933596 4646.0 + 0 ENSG00000166126.10 protein_coding AMN 2 OTTHUMG00000171897.2 overlapping_locus +23183 chr14 HAVANA gene 102933574 102937177 828.0 + 0 ENSG00000259515.1 antisense AL117209.1 2 OTTHUMG00000171899.1 overlapping_locus +23184 chr14 HAVANA gene 103041469 103042094 626.0 + 0 ENSG00000213176.4 processed_pseudogene RPL13P6 1 OTTHUMG00000158135.1 pseudo_consens +23185 chr14 HAVANA gene 102932379 103057462 8009.0 - 0 ENSG00000198752.10 protein_coding CDC42BPB 1 OTTHUMG00000171898.4 +23186 chr14 HAVANA gene 103084210 103090027 732.0 + 0 ENSG00000283071.1 protein_coding LBHD2 2 OTTHUMG00000191553.1 +23187 chr14 HAVANA gene 103094723 103098885 386.0 + 0 ENSG00000259444.1 sense_overlapping AL161669.1 2 OTTHUMG00000171900.1 +23188 chr14 HAVANA gene 103100144 103110559 3480.0 + 0 ENSG00000205436.7 protein_coding EXOC3L4 2 OTTHUMG00000171888.2 +23189 chr14 HAVANA gene 103120847 103123007 584.0 - 0 ENSG00000259717.1 lincRNA LINC00677 2 OTTHUMG00000171889.1 +23190 chr14 HAVANA gene 103123442 103137439 5029.0 + 0 ENSG00000185215.8 protein_coding TNFAIP2 2 OTTHUMG00000171890.2 +23191 chr14 HAVANA gene 103139675 103141959 2285.0 + 0 ENSG00000259374.2 transcribed_processed_pseudogene NDUFB4P11 1 OTTHUMG00000171891.1 pseudo_consens +23192 chr14 HAVANA gene 103148597 103149408 515.0 + 0 ENSG00000259535.1 processed_pseudogene RPL21P12 1 OTTHUMG00000171892.1 pseudo_consens +23193 chr14 HAVANA gene 103184204 103185039 527.0 + 0 ENSG00000259525.1 processed_pseudogene GCSHP2 1 OTTHUMG00000171893.1 pseudo_consens +23194 chr14 HAVANA gene 103187221 103189028 1558.0 - 0 ENSG00000251533.2 lincRNA LINC00605 2 OTTHUMG00000171894.1 +23195 chr14 HAVANA gene 103207748 103207789 42.0 + 0 ENSG00000270705.1 processed_pseudogene AL161669.2 2 OTTHUMG00000184597.1 +23196 chr14 HAVANA gene 103208100 103208876 777.0 + 0 ENSG00000278071.1 lincRNA AL161669.3 2 OTTHUMG00000187162.1 +23197 chr14 HAVANA gene 103241492 103241972 481.0 + 0 ENSG00000242837.1 processed_pseudogene RPL21P13 1 OTTHUMG00000158137.1 pseudo_consens +23198 chr14 HAVANA gene 103279223 103279955 733.0 + 0 ENSG00000270938.1 transcribed_processed_pseudogene RAP2CP1 1 OTTHUMG00000184396.1 pseudo_consens +23199 chr14 HAVANA gene 103282933 103283468 536.0 + 0 ENSG00000240624.1 processed_pseudogene AL138976.1 1 OTTHUMG00000158139.1 pseudo_consens +23200 chr14 HAVANA gene 103331674 103332367 694.0 - 0 ENSG00000259775.1 antisense AL138976.2 2 OTTHUMG00000173006.1 +23201 chr14 ENSEMBL gene 103337849 103337974 126.0 + 0 ENSG00000272533.1 snoRNA SNORA28 3 +23202 chr14 HAVANA gene 103333544 103345025 8505.0 + 0 ENSG00000100664.10 protein_coding EIF5 1 OTTHUMG00000171839.3 ncRNA_host +23203 chr14 HAVANA gene 103364239 103364820 582.0 - 0 ENSG00000259428.1 processed_pseudogene HMGB3P26 1 OTTHUMG00000171840.1 pseudo_consens +23204 chr14 HAVANA gene 103374033 103374916 884.0 - 0 ENSG00000243904.1 processed_pseudogene RPSAP5 1 OTTHUMG00000158144.1 pseudo_consens +23205 chr14 HAVANA gene 103412119 103412761 643.0 - 0 ENSG00000244691.1 processed_pseudogene RPL10AP1 1 OTTHUMG00000158148.1 pseudo_consens +23206 chr14 HAVANA gene 103385392 103503831 8891.0 + 0 ENSG00000075413.17 protein_coding MARK3 1 OTTHUMG00000171789.4 +23207 chr14 HAVANA gene 103519659 103523111 2669.0 - 0 ENSG00000166165.12 protein_coding CKB 2 OTTHUMG00000171786.2 +23208 chr14 HAVANA gene 103525010 103529072 4063.0 - 0 ENSG00000260285.1 antisense AL133367.1 2 OTTHUMG00000172764.2 +23209 chr14 HAVANA gene 103529184 103537073 3229.0 + 0 ENSG00000166166.12 protein_coding TRMT61A 2 OTTHUMG00000171762.1 +23210 chr14 ENSEMBL gene 103550345 103550406 62.0 + 0 ENSG00000252469.1 snRNA RNU7-160P 3 +23211 chr14 HAVANA gene 103553421 103561877 553.0 + 0 ENSG00000258851.1 antisense AL139300.2 2 OTTHUMG00000171735.1 +23212 chr14 HAVANA gene 103556544 103562831 5271.0 - 0 ENSG00000166170.9 protein_coding BAG5 2 OTTHUMG00000171763.2 +23213 chr14 ENSEMBL gene 103567405 103567545 141.0 + 0 ENSG00000201184.1 snRNA RNU4-68P 3 +23214 chr14 HAVANA gene 103562962 103607523 3932.0 + 0 ENSG00000256053.7 protein_coding APOPT1 1 OTTHUMG00000153929.3 ncRNA_host,overlapping_locus +23215 chr14 HAVANA gene 103682362 103684015 1404.0 - 0 ENSG00000246451.2 antisense AL049840.1 2 OTTHUMG00000171724.1 +23216 chr14 HAVANA gene 103562962 103685924 2505.0 + 0 ENSG00000256500.5 protein_coding AL139300.1 2 OTTHUMG00000169226.3 ncRNA_host,overlapping_locus +23217 chr14 HAVANA gene 103687576 103688127 552.0 + 0 ENSG00000270108.1 sense_intronic AL049840.5 2 OTTHUMG00000183943.1 overlapping_locus +23218 chr14 HAVANA gene 103694516 103695050 535.0 - 0 ENSG00000269910.1 antisense AL049840.2 2 OTTHUMG00000183944.1 +23219 chr14 HAVANA gene 103694560 103695170 611.0 + 0 ENSG00000269940.1 sense_intronic AL049840.3 2 OTTHUMG00000183945.1 overlapping_locus +23220 chr14 HAVANA gene 103696353 103697163 811.0 + 0 ENSG00000269958.1 sense_intronic AL049840.4 2 OTTHUMG00000183946.1 overlapping_locus +23221 chr14 HAVANA gene 103561896 103714249 19251.0 + 0 ENSG00000126214.21 protein_coding KLC1 1 OTTHUMG00000169227.6 ncRNA_host,overlapping_locus +23222 chr14 HAVANA gene 103697609 103715504 7507.0 - 0 ENSG00000126215.13 protein_coding XRCC3 2 OTTHUMG00000169228.5 +23223 chr14 ENSEMBL gene 103725728 103725825 98.0 - 0 ENSG00000253096.1 misc_RNA RF00019 3 +23224 chr14 HAVANA gene 103715730 103733668 8390.0 + 0 ENSG00000100711.13 protein_coding ZFYVE21 2 OTTHUMG00000171651.2 +23225 chr14 HAVANA gene 103762803 103763277 475.0 + 0 ENSG00000270591.1 transcribed_processed_pseudogene AL049840.6 1 OTTHUMG00000184608.1 pseudo_consens +23226 chr14 ENSEMBL gene 103797272 103797348 77.0 - 0 ENSG00000202275.1 snoRNA RF00280 3 +23227 chr14 HAVANA gene 103733195 103847590 9588.0 - 0 ENSG00000088808.17 protein_coding PPP1R13B 1 OTTHUMG00000171647.4 ncRNA_host +23228 chr14 HAVANA gene 103847721 103858049 2056.0 + 0 ENSG00000258735.1 lincRNA LINC00637 1 OTTHUMG00000171648.1 +23229 chr14 HAVANA gene 103875055 103877478 127.0 + 0 ENSG00000258914.1 lincRNA AL132712.2 2 OTTHUMG00000171650.1 +23230 chr14 HAVANA gene 103854366 103880111 582.0 - 0 ENSG00000258534.1 lincRNA AL132712.1 2 OTTHUMG00000171649.1 +23231 chr14 HAVANA gene 103912288 103928269 3415.0 - 0 ENSG00000156411.9 protein_coding ATP5MPL 2 OTTHUMG00000171601.1 +23232 chr14 HAVANA gene 103940426 103942561 1454.0 - 0 ENSG00000227729.4 protein_coding RD3L 1 OTTHUMG00000152877.4 +23233 chr14 ENSEMBL gene 104013642 104013933 292.0 + 0 ENSG00000242894.3 misc_RNA RN7SL634P 3 +23234 chr14 HAVANA gene 103928462 104052667 5480.0 + 0 ENSG00000156414.18 protein_coding TDRD9 2 OTTHUMG00000152876.3 ncRNA_host +23235 chr14 HAVANA gene 104085679 104115581 6125.0 + 0 ENSG00000166183.15 protein_coding ASPG 2 OTTHUMG00000170045.4 +23236 chr14 ENSEMBL gene 104117418 104117503 86.0 - 0 ENSG00000283165.1 miRNA MIR203B 3 +23237 chr14 ENSEMBL gene 104117405 104117514 110.0 + 0 ENSG00000207568.1 miRNA MIR203A 3 +23238 chr14 HAVANA gene 104137150 104137898 462.0 - 0 ENSG00000258748.1 antisense AL359399.1 2 OTTHUMG00000171595.1 +23239 chr14 HAVANA gene 104138723 104180894 6756.0 + 0 ENSG00000066735.14 protein_coding KIF26A 2 OTTHUMG00000154986.3 +23240 chr14 HAVANA gene 104223584 104288069 1474.0 + 0 ENSG00000258913.1 lincRNA AL590079.1 2 OTTHUMG00000170825.2 +23241 chr14 HAVANA gene 104376530 104378951 518.0 - 0 ENSG00000258598.1 lincRNA AL512357.1 2 OTTHUMG00000170826.1 +23242 chr14 ENSEMBL gene 104400943 104401048 106.0 - 0 ENSG00000222761.1 snRNA RNU6-684P 3 +23243 chr14 HAVANA gene 104450979 104451433 455.0 + 0 ENSG00000213159.4 processed_pseudogene CEND1P1 1 OTTHUMG00000029805.2 pseudo_consens +23244 chr14 HAVANA gene 104589021 104589847 543.0 - 0 ENSG00000259037.1 antisense BX927359.1 2 OTTHUMG00000170828.1 overlapping_locus +23245 chr14 HAVANA gene 104579684 104590515 3036.0 + 0 ENSG00000184601.10 protein_coding C14orf180 2 OTTHUMG00000029806.3 +23246 chr14 HAVANA gene 104474678 104605647 4873.0 - 0 ENSG00000258986.6 protein_coding TMEM179 1 OTTHUMG00000170829.3 overlapping_locus +23247 chr14 HAVANA gene 104653548 104655787 723.0 - 0 ENSG00000258736.1 lincRNA AL583722.3 2 OTTHUMG00000170815.1 +23248 chr14 HAVANA gene 104661120 104665558 3816.0 - 0 ENSG00000260792.1 lincRNA LINC02280 2 OTTHUMG00000173007.1 +23249 chr14 ENSEMBL gene 104677694 104677749 56.0 - 0 ENSG00000265291.1 miRNA MIR4710 3 +23250 chr14 HAVANA gene 104681146 104684932 1307.0 + 0 ENSG00000256050.2 lincRNA AL583722.1 1 OTTHUMG00000170816.1 +23251 chr14 HAVANA gene 104690091 104691284 716.0 - 0 ENSG00000258858.1 antisense AL583722.4 2 OTTHUMG00000170817.1 +23252 chr14 HAVANA gene 104689606 104722535 9488.0 + 0 ENSG00000203485.12 protein_coding INF2 1 OTTHUMG00000029811.10 +23253 chr14 HAVANA gene 104724186 104747325 5775.0 + 0 ENSG00000185100.10 protein_coding ADSSL1 1 OTTHUMG00000170818.2 +23254 chr14 HAVANA gene 104753100 104768494 4776.0 + 0 ENSG00000184990.12 protein_coding SIVA1 2 OTTHUMG00000170819.3 +23255 chr14 HAVANA gene 104769349 104770271 663.0 + 0 ENSG00000258430.1 antisense AL583722.2 2 OTTHUMG00000170804.1 +23256 chr14 HAVANA gene 104769349 104795751 11162.0 - 0 ENSG00000142208.16 protein_coding AKT1 1 OTTHUMG00000170795.7 +23257 chr14 HAVANA gene 104800596 104804712 3905.0 + 0 ENSG00000179627.9 protein_coding ZBTB42 2 OTTHUMG00000170790.1 +23258 chr14 HAVANA gene 104815449 104815753 305.0 - 0 ENSG00000279140.1 TEC AL590326.1 2 OTTHUMG00000184085.1 +23259 chr14 HAVANA gene 104821201 104823718 2518.0 + 0 ENSG00000258701.1 lincRNA LINC00638 2 OTTHUMG00000170791.1 +23260 chr14 HAVANA gene 104830838 104831171 334.0 - 0 ENSG00000239365.2 processed_pseudogene RPS26P49 1 OTTHUMG00000158157.2 pseudo_consens +23261 chr14 HAVANA gene 104835997 104836852 856.0 - 0 ENSG00000196183.5 processed_pseudogene RPS2P4 1 OTTHUMG00000158156.2 pseudo_consens +23262 chr14 HAVANA gene 104842663 104845916 3254.0 + 0 ENSG00000258811.1 lincRNA AL583810.2 2 OTTHUMG00000170761.1 +23263 chr14 HAVANA gene 104857792 104858836 1045.0 - 0 ENSG00000258593.2 lincRNA AL583810.1 2 OTTHUMG00000170762.2 +23264 chr14 HAVANA gene 104865280 104896770 7199.0 + 0 ENSG00000099814.15 protein_coding CEP170B 2 OTTHUMG00000170763.2 +23265 chr14 HAVANA gene 104904342 104905204 584.0 + 0 ENSG00000259067.1 lincRNA AL583810.3 2 OTTHUMG00000170764.1 +23266 chr14 HAVANA gene 104924713 104937790 6977.0 + 0 ENSG00000166428.13 protein_coding PLD4 2 OTTHUMG00000144167.6 +23267 chr14 HAVANA gene 104937244 104978357 18771.0 - 0 ENSG00000185567.6 protein_coding AHNAK2 1 OTTHUMG00000170765.1 +23268 chr14 HAVANA gene 104985775 105010482 5225.0 + 0 ENSG00000140104.13 protein_coding CLBA1 2 OTTHUMG00000170474.1 +23269 chr14 HAVANA gene 105009573 105021148 2513.0 - 0 ENSG00000170779.10 protein_coding CDCA4 2 OTTHUMG00000170767.1 +23270 chr14 HAVANA gene 105049389 105065445 4200.0 - 0 ENSG00000183484.11 protein_coding GPR132 1 OTTHUMG00000140173.5 +23271 chr14 HAVANA gene 105093609 105099004 1177.0 + 0 ENSG00000257556.1 lincRNA LINC02298 2 OTTHUMG00000170462.1 +23272 chr14 HAVANA gene 105110347 105110807 461.0 - 0 ENSG00000280244.1 TEC AL512356.3 2 OTTHUMG00000170463.1 +23273 chr14 HAVANA gene 105112690 105112863 174.0 - 0 ENSG00000258154.2 unprocessed_pseudogene AL512356.2 2 OTTHUMG00000170464.2 +23274 chr14 ENSEMBL gene 105150778 105150864 87.0 - 0 ENSG00000273778.1 miRNA MIR6765 3 +23275 chr14 HAVANA gene 105140981 105168824 6397.0 - 0 ENSG00000184916.8 protein_coding JAG2 2 OTTHUMG00000140172.2 ncRNA_host,overlapping_locus +23276 chr14 HAVANA gene 105152194 105181194 535.0 - 0 ENSG00000257622.1 processed_transcript AL512356.1 2 OTTHUMG00000170466.1 overlapping_locus +23277 chr14 HAVANA gene 105172938 105181323 1916.0 - 0 ENSG00000183828.14 protein_coding NUDT14 2 OTTHUMG00000170372.2 overlapping_locus +23278 chr14 HAVANA gene 105248490 105251093 2392.0 + 0 ENSG00000184887.13 protein_coding BTBD6 2 OTTHUMG00000029887.6 retrogene +23279 chr14 HAVANA gene 105209286 105315589 13167.0 - 0 ENSG00000185024.16 protein_coding BRF1 2 OTTHUMG00000029884.8 +23280 chr14 HAVANA gene 105370418 105372918 2501.0 + 0 ENSG00000279495.1 TEC AL928654.4 2 OTTHUMG00000170423.1 overlapping_locus +23281 chr14 HAVANA gene 105374618 105374971 354.0 + 0 ENSG00000242085.1 processed_pseudogene RPS20P33 1 OTTHUMG00000158158.1 pseudo_consens,overlapping_locus +23282 chr14 HAVANA gene 105300563 105398147 12363.0 + 0 ENSG00000179364.13 protein_coding PACS2 1 OTTHUMG00000170450.3 overlapping_locus +23283 chr14 HAVANA gene 105416884 105419739 2279.0 - 0 ENSG00000251602.6 antisense AL928654.1 2 OTTHUMG00000170424.1 +23284 chr14 HAVANA gene 105398579 105450106 2837.0 + 0 ENSG00000226174.6 protein_coding TEX22 2 OTTHUMG00000156137.34 overlapping_locus +23285 chr14 HAVANA gene 105467793 105470617 445.0 - 0 ENSG00000257270.1 antisense AL928654.2 2 OTTHUMG00000170425.1 +23286 chr14 HAVANA gene 105419820 105470729 6966.0 + 0 ENSG00000182979.17 protein_coding MTA1 2 OTTHUMG00000150362.36 overlapping_locus +23287 chr14 HAVANA gene 105472962 105480170 4837.0 + 0 ENSG00000182809.10 protein_coding CRIP2 1 OTTHUMG00000029906.5 +23288 chr14 HAVANA gene 105486317 105488947 2485.0 + 0 ENSG00000213145.9 protein_coding CRIP1 2 OTTHUMG00000029908.4 overlapping_locus +23289 chr14 HAVANA gene 105487199 105492267 1408.0 + 0 ENSG00000257341.5 protein_coding AL928654.3 2 OTTHUMG00000029910.8 overlapping_locus +23290 chr14 HAVANA gene 105489855 105499575 6698.0 + 0 ENSG00000185347.17 protein_coding TEDC1 1 OTTHUMG00000170426.4 overlapping_locus +23291 chr14 HAVANA gene 105526603 105530202 1904.0 + 0 ENSG00000184986.10 protein_coding TMEM121 2 OTTHUMG00000029912.3 +23292 chr14 HAVANA gene 105536861 105537239 379.0 - 0 ENSG00000230157.1 processed_pseudogene ATP5MC1P1 1 OTTHUMG00000152474.1 pseudo_consens +23293 chr14 HAVANA gene 105546610 105549694 1224.0 - 0 ENSG00000234402.1 unprocessed_pseudogene ELK2BP 1 OTTHUMG00000152473.1 pseudo_consens +23294 chr14 HAVANA gene 105583731 105588395 1430.0 - 0 ENSG00000211890.4 IG_C_gene IGHA2 2 OTTHUMG00000152472.2 +23295 chr14 HAVANA gene 105597691 105601728 1618.0 - 0 ENSG00000211891.6 IG_C_gene IGHE 2 OTTHUMG00000152483.2 overlapping_locus +23296 chr14 ENSEMBL gene 105621116 105621180 65.0 + 0 ENSG00000274172.1 miRNA MIR8071-1 3 +23297 chr14 HAVANA gene 105620506 105626066 2740.0 - 0 ENSG00000211892.4 IG_C_gene IGHG4 2 OTTHUMG00000152481.3 +23298 chr14 ENSEMBL gene 105640168 105640232 65.0 + 0 ENSG00000277030.1 miRNA MIR8071-2 3 +23299 chr14 HAVANA gene 105639559 105644790 2737.0 - 0 ENSG00000211893.4 IG_C_gene IGHG2 2 OTTHUMG00000152482.2 +23300 chr14 HAVANA gene 105647924 105649057 548.0 - 0 ENSG00000253364.2 lincRNA AL928742.1 2 OTTHUMG00000164792.1 +23301 chr14 HAVANA gene 105664633 105669843 1178.0 - 0 ENSG00000253755.1 IG_C_pseudogene IGHGP 2 OTTHUMG00000152493.1 +23302 chr14 HAVANA gene 105672308 105673314 1007.0 - 0 ENSG00000213140.3 processed_pseudogene ELK2AP 1 OTTHUMG00000152492.2 pseudo_consens +23303 chr14 HAVANA gene 105703995 105708665 1422.0 - 0 ENSG00000211895.5 IG_C_gene IGHA1 2 OTTHUMG00000152494.3 +23304 chr14 HAVANA gene 105721794 105722527 651.0 - 0 ENSG00000253692.3 IG_C_pseudogene IGHEP1 2 OTTHUMG00000029957.2 +23305 chr14 HAVANA gene 105736343 105743071 2762.0 - 0 ENSG00000211896.7 IG_C_gene IGHG1 2 OTTHUMG00000152495.2 +23306 chr14 HAVANA gene 105764503 105771405 2894.0 - 0 ENSG00000211897.9 IG_C_gene IGHG3 2 OTTHUMG00000152539.2 +23307 chr14 HAVANA gene 105785505 105785831 327.0 - 0 ENSG00000270371.1 processed_pseudogene AL122127.1 1 OTTHUMG00000184425.1 pseudo_consens +23308 chr14 HAVANA gene 105836765 105845678 1708.0 - 0 ENSG00000211898.7 IG_C_gene IGHD 2 OTTHUMG00000152538.2 +23309 chr14 HAVANA gene 105851705 105856218 1871.0 - 0 ENSG00000211899.10 IG_C_gene IGHM 2 OTTHUMG00000152452.6 +23310 chr14 ENSEMBL gene 105857513 105857572 60.0 - 0 ENSG00000265612.1 miRNA MIR4539 3 +23311 chr14 ENSEMBL gene 105858124 105858175 52.0 - 0 ENSG00000264024.2 miRNA MIR4507 3 +23312 chr14 ENSEMBL gene 105858165 105858242 78.0 - 0 ENSG00000263413.2 miRNA MIR4538 3 +23313 chr14 ENSEMBL gene 105859484 105859553 70.0 - 0 ENSG00000264781.1 miRNA MIR4537 3 +23314 chr14 HAVANA gene 105863198 105863258 61.0 - 0 ENSG00000211900.2 IG_J_gene IGHJ6 2 OTTHUMG00000152455.2 +23315 chr14 HAVANA gene 105863416 105863465 50.0 - 0 ENSG00000237111.1 IG_J_pseudogene IGHJ3P 2 OTTHUMG00000152459.1 +23316 chr14 HAVANA gene 105863814 105863862 49.0 - 0 ENSG00000242472.1 IG_J_gene IGHJ5 2 OTTHUMG00000152461.2 +23317 chr14 HAVANA gene 105864215 105864260 46.0 - 0 ENSG00000240041.1 IG_J_gene IGHJ4 2 OTTHUMG00000152454.2 +23318 chr14 HAVANA gene 105864587 105864635 49.0 - 0 ENSG00000242887.1 IG_J_gene IGHJ3 2 OTTHUMG00000152453.2 +23319 chr14 HAVANA gene 105864793 105864852 60.0 - 0 ENSG00000237547.1 IG_J_pseudogene IGHJ2P 2 OTTHUMG00000152456.1 +23320 chr14 HAVANA gene 105865199 105865250 52.0 - 0 ENSG00000211904.2 IG_J_gene IGHJ2 2 OTTHUMG00000152457.2 +23321 chr14 HAVANA gene 105865407 105865458 52.0 - 0 ENSG00000211905.1 IG_J_gene IGHJ1 2 OTTHUMG00000152460.2 +23322 chr14 HAVANA gene 105865551 105865561 11.0 - 0 ENSG00000236597.1 IG_D_gene IGHD7-27 2 OTTHUMG00000152435.2 +23323 chr14 HAVANA gene 105865624 105865678 55.0 - 0 ENSG00000227335.1 IG_J_pseudogene IGHJ1P 2 OTTHUMG00000152458.1 +23324 chr14 HAVANA gene 105881034 105881053 20.0 - 0 ENSG00000211907.1 IG_D_gene IGHD1-26 2 OTTHUMG00000152429.2 +23325 chr14 HAVANA gene 105881539 105881556 18.0 - 0 ENSG00000225825.1 IG_D_gene IGHD6-25 2 OTTHUMG00000152436.2 +23326 chr14 HAVANA gene 105883903 105883922 20.0 - 0 ENSG00000211909.1 IG_D_gene IGHD5-24 2 OTTHUMG00000152427.2 +23327 chr14 HAVANA gene 105884870 105884888 19.0 - 0 ENSG00000227196.1 IG_D_gene IGHD4-23 2 OTTHUMG00000152438.2 +23328 chr14 HAVANA gene 105886031 105886061 31.0 - 0 ENSG00000211911.1 IG_D_gene IGHD3-22 2 OTTHUMG00000152434.2 +23329 chr14 HAVANA gene 105888551 105888578 28.0 - 0 ENSG00000211912.1 IG_D_gene IGHD2-21 2 OTTHUMG00000152428.2 +23330 chr14 HAVANA gene 105891191 105891207 17.0 - 0 ENSG00000237020.1 IG_D_gene IGHD1-20 2 OTTHUMG00000152432.2 +23331 chr14 HAVANA gene 105891699 105891719 21.0 - 0 ENSG00000211914.1 IG_D_gene IGHD6-19 2 OTTHUMG00000152431.2 +23332 chr14 HAVANA gene 105893542 105893561 20.0 - 0 ENSG00000211915.1 IG_D_gene IGHD5-18 2 OTTHUMG00000152433.2 +23333 chr14 HAVANA gene 105894508 105894523 16.0 - 0 ENSG00000227800.1 IG_D_gene IGHD4-17 2 OTTHUMG00000152437.2 +23334 chr14 HAVANA gene 105895634 105895670 37.0 - 0 ENSG00000211917.1 IG_D_gene IGHD3-16 2 OTTHUMG00000152439.2 +23335 chr14 HAVANA gene 105890084 105896577 485.0 + 0 ENSG00000244620.1 lincRNA AC246787.2 2 OTTHUMG00000152317.2 +23336 chr14 HAVANA gene 105897957 105897987 31.0 - 0 ENSG00000211918.1 IG_D_gene IGHD2-15 2 OTTHUMG00000152430.2 +23337 chr14 HAVANA gene 105900638 105900654 17.0 - 0 ENSG00000227108.1 IG_D_gene IGHD1-14 2 OTTHUMG00000152369.2 +23338 chr14 HAVANA gene 105901142 105901162 21.0 - 0 ENSG00000211920.1 IG_D_gene IGHD6-13 2 OTTHUMG00000152370.2 +23339 chr14 HAVANA gene 105902649 105902671 23.0 - 0 ENSG00000211921.1 IG_D_gene IGHD5-12 2 OTTHUMG00000152367.2 +23340 chr14 HAVANA gene 105903616 105903631 16.0 - 0 ENSG00000232543.2 IG_D_gene IGHD4-11 2 OTTHUMG00000152368.2 +23341 chr14 HAVANA gene 105904497 105904527 31.0 - 0 ENSG00000211923.1 IG_D_gene IGHD3-10 2 OTTHUMG00000152354.3 +23342 chr14 HAVANA gene 105904681 105904711 31.0 - 0 ENSG00000211924.1 IG_D_gene IGHD3-9 2 OTTHUMG00000152352.2 +23343 chr14 HAVANA gene 105907211 105907241 31.0 - 0 ENSG00000211925.1 IG_D_gene IGHD2-8 2 OTTHUMG00000152361.2 +23344 chr14 HAVANA gene 105909907 105909923 17.0 - 0 ENSG00000237197.1 IG_D_gene IGHD1-7 2 OTTHUMG00000152357.2 +23345 chr14 HAVANA gene 105910410 105910427 18.0 - 0 ENSG00000228131.1 IG_D_gene IGHD6-6 2 OTTHUMG00000152353.2 +23346 chr14 HAVANA gene 105912257 105912276 20.0 - 0 ENSG00000211928.1 IG_D_gene IGHD5-5 2 OTTHUMG00000152360.2 +23347 chr14 HAVANA gene 105913222 105913237 16.0 - 0 ENSG00000233655.1 IG_D_gene IGHD4-4 2 OTTHUMG00000152355.2 +23348 chr14 HAVANA gene 105914359 105914389 31.0 - 0 ENSG00000211930.1 IG_D_gene IGHD3-3 2 OTTHUMG00000152358.2 +23349 chr14 HAVANA gene 105916826 105916856 31.0 - 0 ENSG00000211931.1 IG_D_gene IGHD2-2 2 OTTHUMG00000152356.2 +23350 chr14 HAVANA gene 105919502 105919518 17.0 - 0 ENSG00000236170.1 IG_D_gene IGHD1-1 2 OTTHUMG00000152359.2 +23351 chr14 HAVANA gene 105917979 105932642 9884.0 + 0 ENSG00000226777.7 lincRNA FAM30A 1 OTTHUMG00000152318.3 +23352 chr14 HAVANA gene 105939756 105940253 415.0 - 0 ENSG00000211933.2 IG_V_gene IGHV6-1 2 OTTHUMG00000152324.2 +23353 chr14 HAVANA gene 105945210 105945389 180.0 - 0 ENSG00000254279.1 IG_V_pseudogene IGHVII-1-1 2 OTTHUMG00000152325.1 +23354 chr14 HAVANA gene 105969729 105972269 2015.0 - 0 ENSG00000271968.2 transcribed_unprocessed_pseudogene ADAM6 1 OTTHUMG00000152319.4 pseudo_consens +23355 chr14 HAVANA gene 105978520 105979146 627.0 - 0 ENSG00000225200.2 processed_pseudogene AC246787.1 1 OTTHUMG00000152326.3 pseudo_consens +23356 chr14 HAVANA gene 105986582 105987083 417.0 - 0 ENSG00000211934.3 IG_V_gene IGHV1-2 2 OTTHUMG00000152320.4 +23357 chr14 HAVANA gene 106001534 106001824 291.0 - 0 ENSG00000253780.1 IG_V_pseudogene IGHVIII-2-1 2 OTTHUMG00000152321.2 +23358 chr14 HAVANA gene 106005095 106005574 395.0 - 0 ENSG00000211935.3 IG_V_gene IGHV1-3 2 OTTHUMG00000152323.4 +23359 chr14 HAVANA gene 106011922 106012420 417.0 - 0 ENSG00000276775.1 IG_V_gene IGHV4-4 2 OTTHUMG00000152322.4 +23360 chr14 HAVANA gene 106025145 106025630 402.0 - 0 ENSG00000282122.1 IG_V_gene IGHV7-4-1 2 OTTHUMG00000191141.2 +23361 chr14 HAVANA gene 106037902 106038365 378.0 - 0 ENSG00000211937.3 IG_V_gene IGHV2-5 2 OTTHUMG00000152287.4 +23362 chr14 HAVANA gene 106039666 106039764 99.0 - 0 ENSG00000253387.1 IG_V_pseudogene IGHVIII-5-1 2 OTTHUMG00000152274.1 +23363 chr14 HAVANA gene 106045600 106045860 261.0 - 0 ENSG00000254053.1 IG_V_pseudogene IGHVIII-5-2 2 OTTHUMG00000152278.1 +23364 chr14 HAVANA gene 106055549 106055998 347.0 - 0 ENSG00000253763.1 IG_V_pseudogene IGHV3-6 2 OTTHUMG00000152283.2 +23365 chr14 HAVANA gene 106062151 106062683 430.0 - 0 ENSG00000211938.2 IG_V_gene IGHV3-7 2 OTTHUMG00000152271.3 +23366 chr14 HAVANA gene 106088122 106088573 353.0 - 0 ENSG00000282639.1 IG_V_gene IGHV3-64D 2 OTTHUMG00000191142.2 +23367 chr14 HAVANA gene 106107972 106108464 410.0 - 0 ENSG00000282651.2 IG_V_gene IGHV5-10-1 2 OTTHUMG00000191143.3 +23368 chr14 HAVANA gene 106116635 106117204 473.0 - 0 ENSG00000211941.3 IG_V_gene IGHV3-11 2 OTTHUMG00000152277.4 +23369 chr14 HAVANA gene 106120207 106120473 267.0 - 0 ENSG00000254215.1 IG_V_pseudogene IGHVIII-11-1 2 OTTHUMG00000152296.1 +23370 chr14 HAVANA gene 106122420 106122709 205.0 - 0 ENSG00000254174.1 IG_V_pseudogene IGHV1-12 2 OTTHUMG00000152281.1 +23371 chr14 HAVANA gene 106129540 106130072 430.0 - 0 ENSG00000211942.3 IG_V_gene IGHV3-13 2 OTTHUMG00000152295.4 +23372 chr14 HAVANA gene 106142287 106142577 291.0 - 0 ENSG00000253412.1 IG_V_pseudogene IGHVIII-13-1 2 OTTHUMG00000152272.2 +23373 chr14 HAVANA gene 106145891 106146131 241.0 - 0 ENSG00000253709.1 IG_V_pseudogene IGHV1-14 2 OTTHUMG00000152290.2 +23374 chr14 HAVANA gene 106153624 106154163 437.0 - 0 ENSG00000211943.2 IG_V_gene IGHV3-15 2 OTTHUMG00000152282.2 +23375 chr14 HAVANA gene 106163583 106163802 220.0 - 0 ENSG00000253458.1 IG_V_pseudogene IGHVII-15-1 2 OTTHUMG00000152275.1 +23376 chr14 HAVANA gene 106165205 106165730 425.0 - 0 ENSG00000211944.2 IG_V_gene IGHV3-16 2 OTTHUMG00000152273.2 +23377 chr14 HAVANA gene 106170749 106171052 304.0 - 0 ENSG00000283948.1 IG_V_pseudogene IGHVIII-16-1 2 OTTHUMG00000191975.1 +23378 chr14 HAVANA gene 106174342 106174760 334.0 - 0 ENSG00000254046.1 IG_V_pseudogene IGHV1-17 2 OTTHUMG00000152288.1 +23379 chr14 HAVANA gene 106179554 106180519 966.0 - 0 ENSG00000273894.1 processed_pseudogene SLC20A1P2 1 OTTHUMG00000188306.1 pseudo_consens +23380 chr14 HAVANA gene 106184901 106185394 410.0 - 0 ENSG00000211945.2 IG_V_gene IGHV1-18 2 OTTHUMG00000152276.3 +23381 chr14 HAVANA gene 106196700 106196990 291.0 - 0 ENSG00000253883.1 IG_V_pseudogene IGHV3-19 2 OTTHUMG00000152280.1 +23382 chr14 HAVANA gene 106206603 106208571 389.0 + 0 ENSG00000271201.1 lincRNA AC247036.1 2 OTTHUMG00000185177.2 +23383 chr14 HAVANA gene 106210936 106211453 415.0 - 0 ENSG00000211946.3 IG_V_gene IGHV3-20 2 OTTHUMG00000152285.4 +23384 chr14 HAVANA gene 106235064 106235594 430.0 - 0 ENSG00000211947.2 IG_V_gene IGHV3-21 2 OTTHUMG00000152279.2 +23385 chr14 HAVANA gene 106257762 106258223 359.0 - 0 ENSG00000253957.1 IG_V_pseudogene IGHV3-22 2 OTTHUMG00000152293.1 +23386 chr14 HAVANA gene 106263362 106263626 265.0 - 0 ENSG00000253345.1 IG_V_pseudogene IGHVII-22-1 2 OTTHUMG00000152102.1 +23387 chr14 HAVANA gene 106264688 106264715 28.0 - 0 ENSG00000254045.1 IG_V_pseudogene IGHVIII-22-2 2 OTTHUMG00000152060.1 +23388 chr14 HAVANA gene 106268606 106269140 432.0 - 0 ENSG00000211949.3 IG_V_gene IGHV3-23 2 OTTHUMG00000152091.4 +23389 chr14 HAVANA gene 106276548 106277043 411.0 - 0 ENSG00000211950.2 IG_V_gene IGHV1-24 2 OTTHUMG00000152095.2 +23390 chr14 HAVANA gene 106286811 106287657 847.0 - 0 ENSG00000238275.2 processed_pseudogene HOMER2P2 1 OTTHUMG00000152092.2 pseudo_consens +23391 chr14 HAVANA gene 106287674 106288828 1078.0 + 0 ENSG00000276210.2 lincRNA LINC00226 2 OTTHUMG00000152078.5 +23392 chr14 HAVANA gene 106289029 106289479 351.0 - 0 ENSG00000253441.1 IG_V_pseudogene IGHV3-25 2 OTTHUMG00000152073.2 +23393 chr14 HAVANA gene 106293568 106293808 241.0 - 0 ENSG00000253367.1 IG_V_pseudogene IGHVIII-25-1 2 OTTHUMG00000152072.2 +23394 chr14 HAVANA gene 106301396 106301862 381.0 - 0 ENSG00000211951.2 IG_V_gene IGHV2-26 2 OTTHUMG00000152100.2 +23395 chr14 HAVANA gene 106309417 106309666 250.0 - 0 ENSG00000253462.1 IG_V_pseudogene IGHVIII-26-1 2 OTTHUMG00000152059.2 +23396 chr14 HAVANA gene 106314651 106314975 325.0 - 0 ENSG00000253482.1 IG_V_pseudogene IGHVII-26-2 2 OTTHUMG00000152066.1 +23397 chr14 HAVANA gene 106317823 106318236 330.0 - 0 ENSG00000254326.1 IG_V_pseudogene IGHV7-27 2 OTTHUMG00000152070.1 +23398 chr14 HAVANA gene 106324254 106324760 425.0 - 0 ENSG00000211952.3 IG_V_gene IGHV4-28 2 OTTHUMG00000152062.4 +23399 chr14 HAVANA gene 106329432 106329684 253.0 - 0 ENSG00000253149.3 IG_V_pseudogene IGHVII-28-1 2 OTTHUMG00000152101.3 +23400 chr14 HAVANA gene 106331106 106331563 355.0 - 0 ENSG00000254289.2 IG_V_pseudogene IGHV3-32 2 OTTHUMG00000188328.2 +23401 chr14 HAVANA gene 106335082 106335613 431.0 - 0 ENSG00000270550.1 IG_V_gene IGHV3-30 2 OTTHUMG00000188332.2 +23402 chr14 HAVANA gene 106342680 106342980 301.0 - 0 ENSG00000253491.2 IG_V_pseudogene IGHVII-30-1 2 OTTHUMG00000152099.3 +23403 chr14 HAVANA gene 106344385 106344833 355.0 - 0 ENSG00000253587.2 IG_V_pseudogene IGHV3-30-2 2 OTTHUMG00000152082.2 +23404 chr14 HAVANA gene 106349283 106349792 428.0 - 0 ENSG00000231475.3 IG_V_gene IGHV4-31 2 OTTHUMG00000152097.4 +23405 chr14 HAVANA gene 106354448 106354704 257.0 - 0 ENSG00000283607.2 IG_V_pseudogene IGHVII-30-21 2 OTTHUMG00000191969.1 +23406 chr14 HAVANA gene 106356145 106356591 344.0 - 0 ENSG00000270474.2 IG_V_pseudogene IGHV3-29 2 OTTHUMG00000152063.2 +23407 chr14 HAVANA gene 106359793 106360324 431.0 - 0 ENSG00000211955.2 IG_V_gene IGHV3-33 2 OTTHUMG00000152077.2 +23408 chr14 HAVANA gene 106367385 106367664 280.0 - 0 ENSG00000254203.1 IG_V_pseudogene IGHVII-33-1 2 OTTHUMG00000152086.1 +23409 chr14 HAVANA gene 106369107 106369546 346.0 - 0 ENSG00000253440.1 IG_V_pseudogene IGHV3-33-2 2 OTTHUMG00000152096.1 +23410 chr14 HAVANA gene 106373663 106374145 400.0 - 0 ENSG00000211956.2 IG_V_gene IGHV4-34 2 OTTHUMG00000152074.2 +23411 chr14 HAVANA gene 106377300 106377733 350.0 - 0 ENSG00000253325.1 IG_V_pseudogene IGHV7-34-1 2 OTTHUMG00000152085.1 +23412 chr14 HAVANA gene 106389392 106389858 366.0 - 0 ENSG00000211957.2 IG_V_gene IGHV3-35 2 OTTHUMG00000152079.2 +23413 chr14 HAVANA gene 106392774 106393231 401.0 - 0 ENSG00000253240.1 IG_V_pseudogene IGHV3-36 2 OTTHUMG00000152068.1 +23414 chr14 HAVANA gene 106396676 106397114 340.0 - 0 ENSG00000253359.1 IG_V_pseudogene IGHV3-37 2 OTTHUMG00000152083.1 +23415 chr14 HAVANA gene 106410493 106411021 426.0 - 0 ENSG00000211958.2 IG_V_gene IGHV3-38 2 OTTHUMG00000152093.2 +23416 chr14 HAVANA gene 106418018 106418299 282.0 - 0 ENSG00000253989.2 IG_V_pseudogene IGHVIII-38-1 2 OTTHUMG00000152090.2 +23417 chr14 HAVANA gene 106421711 106422218 425.0 - 0 ENSG00000211959.2 IG_V_gene IGHV4-39 2 OTTHUMG00000152067.2 +23418 chr14 HAVANA gene 106425359 106425654 296.0 - 0 ENSG00000253467.2 IG_V_pseudogene IGHV7-40 2 OTTHUMG00000152088.3 +23419 chr14 HAVANA gene 106436415 106436555 141.0 - 0 ENSG00000228757.1 unprocessed_pseudogene AC244452.1 2 OTTHUMG00000152076.2 +23420 chr14 HAVANA gene 106440950 106441007 58.0 - 0 ENSG00000253294.1 IG_V_pseudogene IGHVII-40-1 2 OTTHUMG00000152098.1 +23421 chr14 HAVANA gene 106443133 106443583 348.0 - 0 ENSG00000278473.1 IG_V_pseudogene IGHV3-41 2 OTTHUMG00000152089.2 +23422 chr14 HAVANA gene 106460092 106461055 964.0 - 0 ENSG00000228966.2 processed_pseudogene HOMER2P1 1 OTTHUMG00000152103.3 pseudo_consens +23423 chr14 HAVANA gene 106463256 106463691 361.0 - 0 ENSG00000254228.2 IG_V_pseudogene IGHV3-42 2 OTTHUMG00000152081.2 +23424 chr14 HAVANA gene 106470264 106470800 434.0 - 0 ENSG00000232216.1 IG_V_gene IGHV3-43 2 OTTHUMG00000152094.2 +23425 chr14 HAVANA gene 106472791 106473000 210.0 - 0 ENSG00000283195.1 IG_V_pseudogene IGHVII-43-1 2 OTTHUMG00000191837.1 +23426 chr14 HAVANA gene 106478006 106478393 289.0 - 0 ENSG00000283562.1 IG_V_pseudogene IGHVIII-44 2 OTTHUMG00000152065.2 +23427 chr14 HAVANA gene 106481424 106481706 283.0 - 0 ENSG00000283464.1 IG_V_pseudogene AC244452.3 2 OTTHUMG00000191850.1 +23428 chr14 HAVANA gene 106489345 106489756 338.0 - 0 ENSG00000253465.1 IG_V_pseudogene IGHVIV-44-1 2 OTTHUMG00000152064.2 +23429 chr14 HAVANA gene 106494134 106494383 250.0 - 0 ENSG00000253895.1 IG_V_pseudogene IGHVII-44-2 2 OTTHUMG00000152080.1 +23430 chr14 HAVANA gene 106506996 106507491 411.0 - 0 ENSG00000211961.3 IG_V_gene IGHV1-45 2 OTTHUMG00000152075.4 +23431 chr14 HAVANA gene 106511117 106511856 655.0 - 0 ENSG00000211962.2 IG_V_gene IGHV1-46 2 OTTHUMG00000151963.2 +23432 chr14 HAVANA gene 106515818 106515854 37.0 - 0 ENSG00000253808.1 IG_V_pseudogene IGHVII-46-1 2 OTTHUMG00000151952.1 +23433 chr14 HAVANA gene 106518582 106519027 335.0 - 0 ENSG00000229092.2 IG_V_pseudogene IGHV3-47 2 OTTHUMG00000151968.2 +23434 chr14 HAVANA gene 106482439 106521073 3086.0 + 0 ENSG00000270816.5 lincRNA LINC00221 2 OTTHUMG00000152084.2 +23435 chr14 HAVANA gene 106531141 106531471 331.0 - 0 ENSG00000253862.1 IG_V_pseudogene IGHVIII-47-1 2 OTTHUMG00000151949.1 +23436 chr14 HAVANA gene 106537810 106538344 432.0 - 0 ENSG00000211964.3 IG_V_gene IGHV3-48 2 OTTHUMG00000151959.4 +23437 chr14 HAVANA gene 106556936 106557477 439.0 - 0 ENSG00000211965.4 IG_V_gene IGHV3-49 2 OTTHUMG00000151967.4 +23438 chr14 HAVANA gene 106564375 106564598 224.0 - 0 ENSG00000253386.1 IG_V_pseudogene IGHVII-49-1 2 OTTHUMG00000151974.1 +23439 chr14 HAVANA gene 106566117 106566555 317.0 - 0 ENSG00000253241.1 IG_V_pseudogene IGHV3-50 2 OTTHUMG00000151964.1 +23440 chr14 HAVANA gene 106578744 106579236 410.0 - 0 ENSG00000211966.2 IG_V_gene IGHV5-51 2 OTTHUMG00000151960.2 +23441 chr14 HAVANA gene 106583506 106583807 302.0 - 0 ENSG00000254167.1 IG_V_pseudogene IGHVIII-51-1 2 OTTHUMG00000151957.2 +23442 chr14 HAVANA gene 106584718 106584976 259.0 - 0 ENSG00000253941.1 IG_V_pseudogene IGHVII-51-2 2 OTTHUMG00000151969.1 +23443 chr14 HAVANA gene 106586376 106586826 353.0 - 0 ENSG00000253545.1 IG_V_pseudogene IGHV3-52 2 OTTHUMG00000151958.1 +23444 chr14 HAVANA gene 106592676 106593347 571.0 - 0 ENSG00000211967.3 IG_V_gene IGHV3-53 2 OTTHUMG00000151966.4 +23445 chr14 HAVANA gene 106599670 106599924 255.0 - 0 ENSG00000253714.1 IG_V_pseudogene IGHVII-53-1 2 OTTHUMG00000151954.2 +23446 chr14 HAVANA gene 106601346 106601792 353.0 - 0 ENSG00000275475.1 IG_V_pseudogene IGHV3-54 2 OTTHUMG00000151962.3 +23447 chr14 HAVANA gene 106606101 106606551 368.0 - 0 ENSG00000254395.1 IG_V_pseudogene IGHV4-55 2 OTTHUMG00000151955.1 +23448 chr14 HAVANA gene 106609762 106610196 351.0 - 0 ENSG00000253131.1 IG_V_pseudogene IGHV7-56 2 OTTHUMG00000151975.1 +23449 chr14 HAVANA gene 106618894 106619173 280.0 - 0 ENSG00000253759.1 IG_V_pseudogene IGHV3-57 2 OTTHUMG00000151961.1 +23450 chr14 HAVANA gene 106622357 106622855 414.0 - 0 ENSG00000211968.3 IG_V_gene IGHV1-58 2 OTTHUMG00000151953.4 +23451 chr14 HAVANA gene 106627249 106627825 495.0 - 0 ENSG00000224373.3 IG_V_gene IGHV4-59 2 OTTHUMG00000151973.3 +23452 chr14 HAVANA gene 106631197 106631653 354.0 - 0 ENSG00000253742.1 IG_V_pseudogene IGHV3-60 2 OTTHUMG00000151956.2 +23453 chr14 ENSEMBL gene 106636672 106636786 115.0 + 0 ENSG00000199480.1 rRNA_pseudogene RNA5SP389 3 +23454 chr14 HAVANA gene 106637718 106637973 256.0 - 0 ENSG00000254329.1 IG_V_pseudogene IGHVII-60-1 2 OTTHUMG00000151951.1 +23455 chr14 HAVANA gene 106639119 106639657 457.0 - 0 ENSG00000211970.3 IG_V_gene IGHV4-61 2 OTTHUMG00000151976.4 +23456 chr14 HAVANA gene 106643142 106643585 340.0 - 0 ENSG00000253132.1 IG_V_pseudogene IGHV3-62 2 OTTHUMG00000151950.2 +23457 chr14 HAVANA gene 106650551 106650785 235.0 - 0 ENSG00000253747.1 IG_V_pseudogene IGHVII-62-1 2 OTTHUMG00000151965.2 +23458 chr14 HAVANA gene 106652237 106652681 341.0 - 0 ENSG00000253936.1 IG_V_pseudogene IGHV3-63 2 OTTHUMG00000151977.2 +23459 chr14 HAVANA gene 106657725 106658258 431.0 - 0 ENSG00000223648.4 IG_V_gene IGHV3-64 2 OTTHUMG00000151971.2 +23460 chr14 HAVANA gene 106666092 106666532 341.0 - 0 ENSG00000253209.1 IG_V_pseudogene IGHV3-65 2 OTTHUMG00000151972.2 +23461 chr14 HAVANA gene 106671772 106672073 302.0 - 0 ENSG00000253169.2 IG_V_pseudogene IGHVII-65-1 2 OTTHUMG00000151970.2 +23462 chr14 HAVANA gene 106675017 106675544 427.0 - 0 ENSG00000211972.2 IG_V_gene IGHV3-66 2 OTTHUMG00000151880.2 +23463 chr14 HAVANA gene 106680603 106681042 357.0 - 0 ENSG00000253274.1 IG_V_pseudogene IGHV1-67 2 OTTHUMG00000151868.1 +23464 chr14 HAVANA gene 106683395 106684350 956.0 - 0 ENSG00000223506.2 processed_pseudogene SLC20A1P1 1 OTTHUMG00000151877.2 pseudo_consens +23465 chr14 HAVANA gene 106686517 106686562 46.0 - 0 ENSG00000253820.1 IG_V_pseudogene IGHVII-67-1 2 OTTHUMG00000151864.1 +23466 chr14 HAVANA gene 106687113 106687200 88.0 - 0 ENSG00000254036.1 IG_V_pseudogene IGHVIII-67-2 2 OTTHUMG00000151861.1 +23467 chr14 HAVANA gene 106692657 106692888 232.0 - 0 ENSG00000253635.1 IG_V_pseudogene IGHVIII-67-3 2 OTTHUMG00000151879.1 +23468 chr14 HAVANA gene 106695102 106695397 296.0 - 0 ENSG00000254052.1 IG_V_pseudogene IGHVIII-67-4 2 OTTHUMG00000151874.1 +23469 chr14 HAVANA gene 106703846 106704286 352.0 - 0 ENSG00000253703.2 IG_V_pseudogene IGHV1-68 2 OTTHUMG00000151876.2 +23470 chr14 HAVANA gene 106714684 106715181 412.0 - 0 ENSG00000211973.2 IG_V_gene IGHV1-69 2 OTTHUMG00000151862.2 +23471 chr14 HAVANA gene 106723574 106724093 434.0 - 0 ENSG00000211974.3 IG_V_gene IGHV2-70D 2 OTTHUMG00000151870.4 +23472 chr14 HAVANA gene 106728163 106728615 350.0 - 0 ENSG00000282600.2 IG_V_pseudogene IGHV3-69-1 2 OTTHUMG00000191145.2 +23473 chr14 HAVANA gene 106737110 106737547 353.0 - 0 ENSG00000281990.1 IG_V_gene IGHV1-69-2 2 OTTHUMG00000191146.2 +23474 chr14 HAVANA gene 106750289 106750594 306.0 - 0 ENSG00000283571.1 IG_pseudogene AC245369.1 2 OTTHUMG00000191852.1 +23475 chr14 HAVANA gene 106762092 106762588 411.0 - 0 ENSG00000280411.1 IG_V_gene IGHV1-69D 2 OTTHUMG00000189341.2 +23476 chr14 HAVANA gene 106770577 106771020 358.0 - 0 ENSG00000274576.2 IG_V_gene IGHV2-70 2 OTTHUMG00000191972.1 +23477 chr14 HAVANA gene 106775157 106775618 359.0 - 0 ENSG00000254056.1 IG_V_pseudogene IGHV3-71 2 OTTHUMG00000151881.1 +23478 chr14 HAVANA gene 106790691 106791233 440.0 - 0 ENSG00000225698.3 IG_V_gene IGHV3-72 2 OTTHUMG00000151865.2 +23479 chr14 HAVANA gene 106802694 106803233 437.0 - 0 ENSG00000211976.2 IG_V_gene IGHV3-73 2 OTTHUMG00000151867.2 +23480 chr14 HAVANA gene 106810442 106811131 587.0 - 0 ENSG00000224650.2 IG_V_gene IGHV3-74 2 OTTHUMG00000151860.2 +23481 chr14 HAVANA gene 106821174 106821414 241.0 - 0 ENSG00000254134.1 IG_V_pseudogene IGHVII-74-1 2 OTTHUMG00000151875.1 +23482 chr14 HAVANA gene 106823687 106824147 358.0 - 0 ENSG00000254176.1 IG_V_pseudogene IGHV3-75 2 OTTHUMG00000151866.1 +23483 chr14 HAVANA gene 106827869 106828163 295.0 - 0 ENSG00000253247.1 IG_V_pseudogene IGHV3-76 2 OTTHUMG00000151878.1 +23484 chr14 HAVANA gene 106831767 106832052 286.0 - 0 ENSG00000253310.1 IG_V_pseudogene IGHVIII-76-1 2 OTTHUMG00000151872.1 +23485 chr14 ENSEMBL gene 106850885 106850999 115.0 - 0 ENSG00000265929.1 miRNA MIR5195 3 +23486 chr14 HAVANA gene 106851123 106851417 295.0 - 0 ENSG00000211978.2 IG_V_pseudogene IGHV5-78 2 OTTHUMG00000151873.1 +23487 chr14 HAVANA gene 106865627 106865895 269.0 - 0 ENSG00000253674.1 IG_V_pseudogene IGHVII-78-1 2 OTTHUMG00000151863.2 +23488 chr14 HAVANA gene 106867660 106868092 341.0 - 0 ENSG00000275747.1 IG_V_pseudogene IGHV3-79 2 OTTHUMG00000151871.2 +23489 chr14 HAVANA gene 106872783 106873186 321.0 - 0 ENSG00000283906.1 IG_V_pseudogene IGHV4-80 2 OTTHUMG00000191973.1 +23490 chr14 HAVANA gene 106874583 106875071 405.0 - 0 ENSG00000211979.2 IG_V_gene IGHV7-81 2 OTTHUMG00000151731.3 +23491 chr14 HAVANA gene 106879563 106879812 250.0 - 0 ENSG00000253303.1 IG_V_pseudogene IGHVIII-82 2 OTTHUMG00000151732.1 +23492 chr15 ENSEMBL gene 19883614 19883716 103.0 + 0 ENSG00000201241.1 snRNA RNU6-978P 3 +23493 chr15 HAVANA gene 19878555 19887814 714.0 + 0 ENSG00000215567.5 unprocessed_pseudogene AC138701.1 2 OTTHUMG00000163698.1 +23494 chr15 HAVANA gene 19899334 19899559 226.0 + 0 ENSG00000258463.1 processed_pseudogene AC138701.2 2 OTTHUMG00000171715.1 +23495 chr15 HAVANA gene 19955300 19955602 303.0 - 0 ENSG00000274347.1 unprocessed_pseudogene AC127381.2 2 OTTHUMG00000187843.1 +23496 chr15 HAVANA gene 19964666 19965101 353.0 - 0 ENSG00000188403.7 IG_V_gene IGHV1OR15-9 2 OTTHUMG00000171652.5 +23497 chr15 HAVANA gene 19967414 19968352 939.0 - 0 ENSG00000258706.1 processed_pseudogene SLC20A1P3 1 OTTHUMG00000171653.1 pseudo_consens +23498 chr15 HAVANA gene 19972782 19973218 353.0 - 0 ENSG00000259337.4 IG_V_pseudogene IGHV1OR15-2 2 OTTHUMG00000176334.3 +23499 chr15 HAVANA gene 19987656 19988117 359.0 - 0 ENSG00000259490.2 IG_V_gene IGHV3OR15-7 2 OTTHUMG00000171835.3 +23500 chr15 HAVANA gene 20003840 20003862 23.0 - 0 ENSG00000270961.1 IG_D_gene IGHD5OR15-5A 2 OTTHUMG00000184622.2 +23501 chr15 HAVANA gene 20004797 20004815 19.0 - 0 ENSG00000271317.1 IG_D_gene IGHD4OR15-4A 2 OTTHUMG00000184621.3 +23502 chr15 HAVANA gene 20005905 20005935 31.0 - 0 ENSG00000282520.1 IG_D_gene IGHD3OR15-3A 2 OTTHUMG00000184598.3 +23503 chr15 HAVANA gene 20008402 20008432 31.0 - 0 ENSG00000282599.1 IG_D_gene IGHD2OR15-2A 2 OTTHUMG00000184594.3 +23504 chr15 HAVANA gene 20011153 20011169 17.0 - 0 ENSG00000271336.1 IG_D_gene IGHD1OR15-1A 2 OTTHUMG00000184580.2 +23505 chr15 HAVANA gene 20012741 20014208 397.0 + 0 ENSG00000277988.1 unprocessed_pseudogene FAM30B 2 OTTHUMG00000187844.1 +23506 chr15 HAVANA gene 20046296 20047994 1699.0 - 0 ENSG00000259769.1 processed_pseudogene AC127381.1 1 OTTHUMG00000171975.1 pseudo_consens +23507 chr15 HAVANA gene 20073699 20074334 636.0 - 0 ENSG00000258397.1 processed_pseudogene BCAR1P1 1 OTTHUMG00000171656.1 pseudo_consens +23508 chr15 ENSEMBL gene 20095733 20096029 297.0 - 0 ENSG00000239471.3 misc_RNA RN7SL584P 3 +23509 chr15 HAVANA gene 20141794 20146430 4637.0 + 0 ENSG00000278935.1 TEC AC087386.2 2 OTTHUMG00000175828.1 +23510 chr15 HAVANA gene 20128745 20147953 572.0 - 0 ENSG00000258410.1 lincRNA AC087386.1 2 OTTHUMG00000171657.1 +23511 chr15 HAVANA gene 20153776 20160826 1141.0 + 0 ENSG00000258780.1 unprocessed_pseudogene BMS1P15 2 OTTHUMG00000171658.1 +23512 chr15 HAVANA gene 20228620 20277503 2512.0 - 0 ENSG00000258628.1 unprocessed_pseudogene AC126603.1 2 OTTHUMG00000171659.1 +23513 chr15 HAVANA gene 20282744 20291586 945.0 + 0 ENSG00000259156.7 transcribed_unprocessed_pseudogene CHEK2P2 2 OTTHUMG00000171660.4 +23514 chr15 HAVANA gene 20344736 20359166 1577.0 + 0 ENSG00000258654.1 lincRNA AC026495.1 2 OTTHUMG00000171661.1 +23515 chr15 HAVANA gene 20379495 20506180 9413.0 - 0 ENSG00000180229.12 transcribed_unprocessed_pseudogene HERC2P3 2 OTTHUMG00000157175.3 +23516 chr15 HAVANA gene 20516252 20520627 735.0 + 0 ENSG00000258488.2 unprocessed_pseudogene AC023310.1 2 OTTHUMG00000171662.3 +23517 chr15 HAVANA gene 20531856 20541800 4013.0 - 0 ENSG00000277322.1 protein_coding GOLGA6L6 2 OTTHUMG00000171663.6 +23518 chr15 HAVANA gene 20545576 20549444 670.0 - 0 ENSG00000258797.2 unprocessed_pseudogene AC023310.3 2 OTTHUMG00000171664.3 +23519 chr15 ENSEMBL gene 20570886 20571175 290.0 + 0 ENSG00000278497.1 misc_RNA RN7SL759P 3 +23520 chr15 HAVANA gene 20562375 20575696 5237.0 + 0 ENSG00000181984.11 unprocessed_pseudogene GOLGA8CP 2 OTTHUMG00000171665.4 +23521 chr15 HAVANA gene 20593494 20599195 4965.0 - 0 ENSG00000258916.2 unprocessed_pseudogene SPATA31E2P 2 OTTHUMG00000171666.3 +23522 chr15 HAVANA gene 20626819 20627365 547.0 - 0 ENSG00000258707.2 processed_pseudogene AC023310.2 1 OTTHUMG00000171716.2 pseudo_consens +23523 chr15 HAVANA gene 20639464 20639890 343.0 - 0 ENSG00000270685.1 IG_V_pseudogene IGHV1OR15-6 2 OTTHUMG00000184707.2 +23524 chr15 HAVANA gene 20642799 20643448 650.0 - 0 ENSG00000278626.1 lincRNA AC023310.4 2 OTTHUMG00000186723.2 +23525 chr15 HAVANA gene 20658900 20664970 6071.0 + 0 ENSG00000279628.1 TEC AC131280.1 2 OTTHUMG00000175834.1 +23526 chr15 HAVANA gene 20657638 20688408 3689.0 - 0 ENSG00000258590.5 transcribed_unprocessed_pseudogene NBEAP1 2 OTTHUMG00000171717.1 +23527 chr15 ENSEMBL gene 20738679 20738785 107.0 + 0 ENSG00000238478.1 snRNA RNU6-498P 3 +23528 chr15 HAVANA gene 20729747 20756183 1602.0 - 0 ENSG00000260409.1 lincRNA AC012414.5 2 OTTHUMG00000172815.1 +23529 chr15 HAVANA gene 20759311 20774794 748.0 - 0 ENSG00000259383.1 lincRNA AC012414.3 2 OTTHUMG00000171841.1 +23530 chr15 HAVANA gene 20773084 20774871 1074.0 + 0 ENSG00000259443.1 lincRNA AC012414.4 2 OTTHUMG00000171842.1 +23531 chr15 HAVANA gene 20775464 20775998 535.0 - 0 ENSG00000258420.1 processed_pseudogene AC012414.1 2 OTTHUMG00000171704.1 +23532 chr15 HAVANA gene 20813299 20814958 761.0 + 0 ENSG00000259089.2 unprocessed_pseudogene GRAMD4P5 1 OTTHUMG00000171805.2 pseudo_consens +23533 chr15 HAVANA gene 20803505 20826173 1507.0 - 0 ENSG00000274499.1 transcribed_processed_pseudogene AC012414.7 2 OTTHUMG00000187846.1 +23534 chr15 HAVANA gene 20826454 20826640 187.0 - 0 ENSG00000259214.1 processed_pseudogene AC012414.2 2 OTTHUMG00000171843.1 +23535 chr15 ENSEMBL gene 20832795 20832869 75.0 + 0 ENSG00000265322.1 miRNA MIR3118-2 3 +23536 chr15 ENSEMBL gene 20855251 20855357 107.0 - 0 ENSG00000238489.1 snRNA RNU6-749P 3 +23537 chr15 HAVANA gene 20835372 20866314 1687.0 - 0 ENSG00000230031.10 protein_coding POTEB2 2 OTTHUMG00000185829.1 ncRNA_host +23538 chr15 HAVANA gene 20890206 20890606 401.0 - 0 ENSG00000261048.1 processed_pseudogene AC012414.6 2 OTTHUMG00000172632.1 +23539 chr15 HAVANA gene 20893383 20893980 598.0 - 0 ENSG00000261554.1 processed_pseudogene AC037471.2 2 OTTHUMG00000172633.1 +23540 chr15 HAVANA gene 20901441 20901609 169.0 - 0 ENSG00000258799.1 processed_pseudogene ZNF519P2 2 OTTHUMG00000171707.1 +23541 chr15 HAVANA gene 20916686 20935658 2645.0 - 0 ENSG00000270831.1 unprocessed_pseudogene NF1P1 2 OTTHUMG00000184188.2 +23542 chr15 ENSEMBL gene 20940252 20940333 82.0 + 0 ENSG00000266545.1 miRNA MIR5701-1 3 +23543 chr15 HAVANA gene 20960675 20961581 907.0 + 0 ENSG00000258855.1 unprocessed_pseudogene OR11J2P 2 OTTHUMG00000171710.1 +23544 chr15 HAVANA gene 20969282 20970215 934.0 - 0 ENSG00000258494.1 unprocessed_pseudogene OR11J5P 2 OTTHUMG00000171711.1 +23545 chr15 HAVANA gene 20940438 20993303 4054.0 + 0 ENSG00000258710.7 lincRNA LINC01193 2 OTTHUMG00000171709.3 +23546 chr15 HAVANA gene 21010494 21010516 23.0 - 0 ENSG00000270824.1 IG_D_gene IGHD5OR15-5B 2 OTTHUMG00000184624.2 +23547 chr15 HAVANA gene 21011451 21011469 19.0 - 0 ENSG00000270451.1 IG_D_gene IGHD4OR15-4B 2 OTTHUMG00000184611.3 +23548 chr15 HAVANA gene 21012559 21012589 31.0 - 0 ENSG00000282089.1 IG_D_gene IGHD3OR15-3B 2 OTTHUMG00000184596.4 +23549 chr15 HAVANA gene 21015048 21015078 31.0 - 0 ENSG00000282268.1 IG_D_gene IGHD2OR15-2B 2 OTTHUMG00000184595.3 +23550 chr15 HAVANA gene 21017800 21017816 17.0 - 0 ENSG00000270185.1 IG_D_gene IGHD1OR15-1B 2 OTTHUMG00000184585.2 +23551 chr15 HAVANA gene 21019388 21020851 410.0 + 0 ENSG00000259698.1 unprocessed_pseudogene FAM30C 2 OTTHUMG00000172241.1 +23552 chr15 HAVANA gene 21053004 21054702 1699.0 - 0 ENSG00000259025.1 processed_pseudogene AC037471.1 1 OTTHUMG00000171712.1 pseudo_consens +23553 chr15 HAVANA gene 21080812 21081447 636.0 - 0 ENSG00000258771.1 processed_pseudogene BCAR1P2 1 OTTHUMG00000171713.1 pseudo_consens +23554 chr15 ENSEMBL gene 21102843 21103138 296.0 - 0 ENSG00000243059.3 misc_RNA RN7SL400P 3 +23555 chr15 HAVANA gene 21127698 21130095 510.0 - 0 ENSG00000260986.1 lincRNA AC126335.1 2 OTTHUMG00000176131.1 +23556 chr15 HAVANA gene 21148334 21152970 4637.0 + 0 ENSG00000279595.1 TEC AC126335.2 2 OTTHUMG00000186724.1 +23557 chr15 HAVANA gene 21160305 21167357 1147.0 + 0 ENSG00000258684.2 unprocessed_pseudogene BMS1P16 2 OTTHUMG00000171714.3 +23558 chr15 HAVANA gene 21250180 21260147 382.0 - 0 ENSG00000258883.1 unprocessed_pseudogene AC068446.3 2 OTTHUMG00000171725.1 +23559 chr15 HAVANA gene 21293653 21295201 1549.0 - 0 ENSG00000237161.4 processed_pseudogene AC068446.1 1 OTTHUMG00000171726.2 pseudo_consens +23560 chr15 ENSEMBL gene 21307749 21307855 107.0 + 0 ENSG00000207289.1 snRNA RNU6-1235P 3 +23561 chr15 HAVANA gene 21298233 21325241 2165.0 - 0 ENSG00000247765.2 lincRNA AC068446.2 2 OTTHUMG00000176136.2 +23562 chr15 HAVANA gene 21328380 21343881 752.0 - 0 ENSG00000280881.1 lincRNA AC060814.5 2 OTTHUMG00000190193.1 +23563 chr15 HAVANA gene 21342171 21343958 1074.0 + 0 ENSG00000280703.1 lincRNA AC060814.4 2 OTTHUMG00000190194.1 +23564 chr15 HAVANA gene 21344548 21345085 538.0 - 0 ENSG00000258415.2 processed_pseudogene AC060814.1 2 OTTHUMG00000171727.2 +23565 chr15 HAVANA gene 21368459 21370621 2163.0 + 0 ENSG00000268531.3 lincRNA AC060814.3 2 OTTHUMG00000187342.2 +23566 chr15 HAVANA gene 21372793 21373881 1089.0 - 0 ENSG00000258712.2 processed_pseudogene CXADRP2 2 OTTHUMG00000171728.2 +23567 chr15 HAVANA gene 21382383 21382842 460.0 + 0 ENSG00000258767.1 processed_pseudogene AC060814.2 1 OTTHUMG00000171732.1 pseudo_consens +23568 chr15 HAVANA gene 21383821 21384064 244.0 + 0 ENSG00000258848.1 processed_pseudogene GRAMD4P6 1 OTTHUMG00000171733.1 pseudo_consens +23569 chr15 ENSEMBL gene 21406385 21406459 75.0 + 0 ENSG00000277243.1 miRNA MIR3118-3 3 +23570 chr15 ENSEMBL gene 21428879 21428985 107.0 - 0 ENSG00000275174.1 snRNA RF00026 3 +23571 chr15 HAVANA gene 21408243 21440451 3418.0 - 0 ENSG00000278522.4 protein_coding POTEB3 2 OTTHUMG00000189222.2 ncRNA_host +23572 chr15 HAVANA gene 21490364 21509404 2500.0 - 0 ENSG00000281347.2 transcribed_unprocessed_pseudogene NF1P9 2 OTTHUMG00000190195.1 +23573 chr15 ENSEMBL gene 21513959 21514040 82.0 + 0 ENSG00000277841.1 miRNA MIR5701-2 3 +23574 chr15 HAVANA gene 21534404 21535346 943.0 + 0 ENSG00000284834.1 unprocessed_pseudogene AC183088.2 2 OTTHUMG00000192383.1 +23575 chr15 HAVANA gene 21542990 21544008 1019.0 - 0 ENSG00000284788.1 unprocessed_pseudogene AC183088.1 2 OTTHUMG00000191746.2 +23576 chr15 HAVANA gene 21552815 21557161 532.0 + 0 ENSG00000284988.1 lincRNA LINC02203 2 OTTHUMG00000190197.2 overlapping_locus +23577 chr15 HAVANA gene 21574225 21575207 983.0 - 0 ENSG00000279639.2 unprocessed_pseudogene AC135068.5 1 OTTHUMG00000191381.1 pseudo_consens +23578 chr15 HAVANA gene 21595684 21596526 843.0 - 0 ENSG00000259324.2 unprocessed_pseudogene OR11K1P 2 OTTHUMG00000191747.2 +23579 chr15 HAVANA gene 21609102 21610043 942.0 + 0 ENSG00000285491.1 transcribed_unprocessed_pseudogene AC135068.11 2 OTTHUMG00000191748.2 overlapping_locus +23580 chr15 HAVANA gene 21614118 21615051 934.0 + 0 ENSG00000285116.1 unprocessed_pseudogene AC135068.10 2 OTTHUMG00000191749.2 +23581 chr15 HAVANA gene 21637909 21638992 1084.0 + 0 ENSG00000182974.3 protein_coding AC135068.1 2 OTTHUMG00000189317.1 overlapping_locus +23582 chr15 HAVANA gene 21651844 21652968 1125.0 + 0 ENSG00000279408.3 protein_coding AC135068.3 2 OTTHUMG00000190198.1 overlapping_locus +23583 chr15 HAVANA gene 21552795 21653276 3050.0 + 0 ENSG00000280709.2 protein_coding LINC02203 2 OTTHUMG00000192385.1 overlapping_locus +23584 chr15 HAVANA gene 21683038 21683962 925.0 + 0 ENSG00000279445.2 unprocessed_pseudogene AC135068.4 2 OTTHUMG00000190199.1 +23585 chr15 HAVANA gene 21703428 21705627 568.0 - 0 ENSG00000281113.1 lincRNA AC135068.7 2 OTTHUMG00000190380.1 +23586 chr15 HAVANA gene 21709649 21710270 622.0 - 0 ENSG00000281087.1 processed_pseudogene AC135068.6 1 OTTHUMG00000190200.1 pseudo_consens +23587 chr15 HAVANA gene 21717808 21718245 353.0 - 0 ENSG00000281179.1 IG_V_gene AC135068.8 2 OTTHUMG00000190381.2 +23588 chr15 HAVANA gene 21735506 21735945 355.0 - 0 ENSG00000281550.1 IG_V_pseudogene AC135068.9 2 OTTHUMG00000190382.1 +23589 chr15 HAVANA gene 21742364 21742799 353.0 - 0 ENSG00000278263.2 IG_V_gene AC135068.2 2 OTTHUMG00000189323.3 +23590 chr15 HAVANA gene 21752278 21752710 348.0 - 0 ENSG00000280655.1 IG_V_pseudogene AC134981.1 2 OTTHUMG00000190383.1 +23591 chr15 ENSEMBL gene 21843750 21843824 75.0 + 0 ENSG00000265793.1 miRNA MIR3118-4 3 +23592 chr15 ENSEMBL gene 21866210 21866316 107.0 - 0 ENSG00000200790.1 snRNA RNU6-631P 3 +23593 chr15 HAVANA gene 21846329 21877703 2281.0 - 0 ENSG00000233917.8 protein_coding POTEB 2 OTTHUMG00000171734.2 ncRNA_host +23594 chr15 HAVANA gene 21911559 21912590 1032.0 - 0 ENSG00000258585.2 unprocessed_pseudogene ZNF519P3 2 OTTHUMG00000171729.2 +23595 chr15 HAVANA gene 21927657 21946641 2505.0 - 0 ENSG00000258997.1 unprocessed_pseudogene NF1P2 2 OTTHUMG00000171730.1 +23596 chr15 ENSEMBL gene 21951242 21951323 82.0 + 0 ENSG00000264902.1 miRNA MIR5701-3 3 +23597 chr15 HAVANA gene 21971706 21972645 940.0 + 0 ENSG00000283524.2 unprocessed_pseudogene OR11J7P 2 OTTHUMG00000191818.2 +23598 chr15 HAVANA gene 21980277 21981245 969.0 - 0 ENSG00000285405.1 unprocessed_pseudogene OR11J6P 2 OTTHUMG00000171731.2 +23599 chr15 HAVANA gene 22009547 22010529 983.0 - 0 ENSG00000258721.3 unprocessed_pseudogene OR11H3P 1 OTTHUMG00000171736.3 pseudo_consens +23600 chr15 HAVANA gene 22030900 22031846 947.0 - 0 ENSG00000283680.2 unprocessed_pseudogene AC134980.1 2 OTTHUMG00000171933.2 +23601 chr15 HAVANA gene 22044476 22045400 925.0 + 0 ENSG00000285135.1 transcribed_unprocessed_pseudogene OR4Q1P 2 OTTHUMG00000171737.4 overlapping_locus +23602 chr15 HAVANA gene 22056709 22057638 930.0 + 0 ENSG00000284892.1 unprocessed_pseudogene OR4H6P 2 OTTHUMG00000172787.3 +23603 chr15 HAVANA gene 21990080 22059831 1587.0 + 0 ENSG00000284500.2 lincRNA AC134980.2 2 OTTHUMG00000172277.2 overlapping_locus +23604 chr15 HAVANA gene 22070241 22083221 1360.0 + 0 ENSG00000274102.2 protein_coding OR4M2 2 OTTHUMG00000171738.3 +23605 chr15 HAVANA gene 22094522 22095472 951.0 + 0 ENSG00000183706.5 protein_coding OR4N4 2 OTTHUMG00000171739.2 overlapping_locus +23606 chr15 HAVANA gene 22015233 22095857 2317.0 + 0 ENSG00000285472.1 protein_coding AC134980.3 2 OTTHUMG00000192386.1 overlapping_locus +23607 chr15 HAVANA gene 22125511 22126434 924.0 + 0 ENSG00000259435.3 transcribed_unprocessed_pseudogene OR4N3P 2 OTTHUMG00000172278.3 +23608 chr15 HAVANA gene 22145939 22148226 545.0 - 0 ENSG00000260739.1 lincRNA AC010760.1 2 OTTHUMG00000172788.1 +23609 chr15 HAVANA gene 22152276 22152897 622.0 - 0 ENSG00000223877.4 unprocessed_pseudogene RPS8P10 1 OTTHUMG00000172789.1 pseudo_consens +23610 chr15 HAVANA gene 22160431 22160868 353.0 - 0 ENSG00000270505.1 IG_V_gene IGHV1OR15-1 2 OTTHUMG00000184670.2 +23611 chr15 HAVANA gene 22178107 22178542 351.0 - 0 ENSG00000271288.1 IG_V_pseudogene IGHV1OR15-3 2 OTTHUMG00000184673.1 +23612 chr15 HAVANA gene 22184967 22185402 353.0 - 0 ENSG00000259261.2 IG_V_gene IGHV4OR15-8 2 OTTHUMG00000171934.3 +23613 chr15 HAVANA gene 22194885 22195317 348.0 - 0 ENSG00000270356.1 IG_V_pseudogene IGHV1OR15-4 2 OTTHUMG00000176336.2 +23614 chr15 HAVANA gene 22202392 22202734 343.0 - 0 ENSG00000271507.1 unprocessed_pseudogene AC025884.3 2 OTTHUMG00000184682.1 +23615 chr15 ENSEMBL gene 22225278 22225329 52.0 - 0 ENSG00000221641.1 miRNA MIR1268A 3 +23616 chr15 HAVANA gene 22258138 22258848 711.0 + 0 ENSG00000259098.1 processed_pseudogene AC025884.2 2 OTTHUMG00000171790.1 +23617 chr15 HAVANA gene 22278971 22282872 378.0 + 0 ENSG00000258732.1 unprocessed_pseudogene AC025884.1 2 OTTHUMG00000171791.2 +23618 chr15 HAVANA gene 22360639 22360918 280.0 + 0 ENSG00000274835.1 unprocessed_pseudogene AC100757.2 2 OTTHUMG00000188448.1 +23619 chr15 HAVANA gene 22371736 22373570 1835.0 + 0 ENSG00000273679.1 processed_pseudogene AC100757.1 1 OTTHUMG00000188433.1 pseudo_consens +23620 chr15 HAVANA gene 22401208 22406944 4214.0 + 0 ENSG00000274279.1 unprocessed_pseudogene SPATA31E3P 2 OTTHUMG00000188383.1 +23621 chr15 ENSEMBL gene 22429200 22429489 290.0 - 0 ENSG00000274568.1 misc_RNA RN7SL545P 3 +23622 chr15 HAVANA gene 22427039 22437902 2837.0 - 0 ENSG00000185182.14 transcribed_unprocessed_pseudogene GOLGA8DP 2 OTTHUMG00000171882.2 +23623 chr15 HAVANA gene 22451209 22455154 1406.0 + 0 ENSG00000275363.1 unprocessed_pseudogene AC100757.3 2 OTTHUMG00000188589.1 +23624 chr15 HAVANA gene 22458903 22469230 4405.0 + 0 ENSG00000277865.4 protein_coding GOLGA6L22 2 OTTHUMG00000171883.5 +23625 chr15 HAVANA gene 22480439 22484840 759.0 - 0 ENSG00000281909.1 unprocessed_pseudogene HERC2P7 2 OTTHUMG00000190239.1 +23626 chr15 HAVANA gene 22495570 22590815 6965.0 + 0 ENSG00000276550.4 transcribed_unprocessed_pseudogene HERC2P2 2 OTTHUMG00000188262.2 +23627 chr15 ENSEMBL gene 22609141 22609377 237.0 - 0 ENSG00000277515.1 misc_RNA RN7SL495P 3 +23628 chr15 HAVANA gene 22606022 22617854 4116.0 - 0 ENSG00000277561.5 transcribed_unprocessed_pseudogene GOLGA8IP 2 OTTHUMG00000188601.2 +23629 chr15 HAVANA gene 22664359 22686213 7269.0 + 0 ENSG00000276141.4 transcribed_unprocessed_pseudogene WHAMMP3 2 OTTHUMG00000188382.1 +23630 chr15 HAVANA gene 22690454 22691158 705.0 - 0 ENSG00000277435.1 processed_pseudogene AC138649.2 1 OTTHUMG00000188377.1 pseudo_consens +23631 chr15 HAVANA gene 22714939 22715225 287.0 + 0 ENSG00000277867.1 processed_pseudogene AC138649.4 2 OTTHUMG00000188376.1 +23632 chr15 HAVANA gene 22714342 22717727 137.0 + 0 ENSG00000283273.1 unprocessed_pseudogene AC138649.5 2 OTTHUMG00000191863.1 +23633 chr15 HAVANA gene 22727104 22744918 1283.0 + 0 ENSG00000275325.4 transcribed_unprocessed_pseudogene PDCD6IPP1 2 OTTHUMG00000188375.1 +23634 chr15 HAVANA gene 22756172 22756729 254.0 - 0 ENSG00000277755.1 processed_pseudogene AC138649.3 1 OTTHUMG00000188374.1 pseudo_consens +23635 chr15 HAVANA gene 22770523 22776199 1623.0 - 0 ENSG00000259425.5 transcribed_unprocessed_pseudogene AC011767.1 2 OTTHUMG00000171918.3 +23636 chr15 HAVANA gene 22757857 22778741 1640.0 + 0 ENSG00000274253.4 sense_overlapping AC138649.1 2 OTTHUMG00000171917.4 overlapping_locus +23637 chr15 HAVANA gene 22773063 22829791 8700.0 + 0 ENSG00000170113.15 protein_coding NIPA1 2 OTTHUMG00000129099.4 overlapping_locus +23638 chr15 HAVANA gene 22838641 22868384 3505.0 + 0 ENSG00000140157.14 protein_coding NIPA2 2 OTTHUMG00000129101.3 +23639 chr15 HAVANA gene 22867052 22981063 10414.0 - 0 ENSG00000273749.4 protein_coding CYFIP1 2 OTTHUMG00000129100.7 +23640 chr15 HAVANA gene 22983192 23039673 6478.0 - 0 ENSG00000275835.4 protein_coding TUBGCP5 2 OTTHUMG00000188371.2 +23641 chr15 HAVANA gene 23083094 23121324 1011.0 + 0 ENSG00000276172.1 transcribed_unprocessed_pseudogene ELMO2P1 2 OTTHUMG00000188345.2 +23642 chr15 HAVANA gene 23128268 23136822 2620.0 - 0 ENSG00000273976.1 protein_coding GOLGA6L1 2 OTTHUMG00000171928.3 +23643 chr15 HAVANA gene 23140563 23144422 668.0 - 0 ENSG00000277505.1 unprocessed_pseudogene AC116165.1 2 OTTHUMG00000171929.4 +23644 chr15 ENSEMBL gene 23165897 23166186 290.0 + 0 ENSG00000273981.1 misc_RNA RN7SL106P 3 +23645 chr15 HAVANA gene 23157366 23170711 5256.0 + 0 ENSG00000175676.15 transcribed_unprocessed_pseudogene GOLGA8EP 2 OTTHUMG00000167132.2 +23646 chr15 HAVANA gene 23179869 23182049 2181.0 + 0 ENSG00000274099.1 processed_pseudogene ABCB10P1 1 OTTHUMG00000188344.1 pseudo_consens +23647 chr15 HAVANA gene 23193491 23193696 206.0 + 0 ENSG00000278541.1 processed_pseudogene AC116165.2 2 OTTHUMG00000188343.1 +23648 chr15 ENSEMBL gene 23197827 23197920 94.0 + 0 ENSG00000276941.1 miRNA MIR4509-1 3 +23649 chr15 HAVANA gene 23225876 23226391 400.0 - 0 ENSG00000278552.1 unprocessed_pseudogene AC116165.3 1 OTTHUMG00000188341.1 pseudo_consens +23650 chr15 HAVANA gene 23289303 23293667 726.0 - 0 ENSG00000259414.1 unprocessed_pseudogene AC242376.1 2 OTTHUMG00000171927.2 +23651 chr15 HAVANA gene 23309607 23314566 2173.0 + 0 ENSG00000274471.2 transcribed_unprocessed_pseudogene AC242376.2 2 OTTHUMG00000171926.5 +23652 chr15 HAVANA gene 23326256 23334127 1816.0 - 0 ENSG00000273756.4 transcribed_unprocessed_pseudogene AC100756.3 1 OTTHUMG00000176395.4 pseudo_consens +23653 chr15 HAVANA gene 23337985 23341848 682.0 - 0 ENSG00000260399.1 unprocessed_pseudogene AC100756.1 2 OTTHUMG00000176414.1 +23654 chr15 ENSEMBL gene 23363272 23363561 290.0 + 0 ENSG00000278222.1 misc_RNA RN7SL536P 3 +23655 chr15 HAVANA gene 23354748 23367231 4349.0 + 0 ENSG00000261739.2 protein_coding GOLGA8S 2 OTTHUMG00000176415.3 ncRNA_host +23656 chr15 HAVANA gene 23430839 23435212 736.0 + 0 ENSG00000261418.1 unprocessed_pseudogene AC100756.2 2 OTTHUMG00000176416.1 +23657 chr15 HAVANA gene 23439498 23447234 3030.0 - 0 ENSG00000174450.11 protein_coding GOLGA6L2 2 OTTHUMG00000176417.1 +23658 chr15 ENSEMBL gene 23562062 23562131 70.0 - 0 ENSG00000265673.1 miRNA MIR4508 3 +23659 chr15 HAVANA gene 23567264 23569657 566.0 - 0 ENSG00000260978.1 antisense AC126407.1 2 OTTHUMG00000176418.1 +23660 chr15 HAVANA gene 23565674 23630075 5735.0 + 0 ENSG00000179455.8 protein_coding MKRN3 1 OTTHUMG00000129160.5 +23661 chr15 HAVANA gene 23643549 23647867 4319.0 - 0 ENSG00000254585.3 protein_coding MAGEL2 2 OTTHUMG00000167582.5 retrogene +23662 chr15 HAVANA gene 23685400 23687330 1931.0 - 0 ENSG00000182636.6 protein_coding NDN 2 OTTHUMG00000129161.3 retrogene +23663 chr15 ENSEMBL gene 23777437 23777543 107.0 - 0 ENSG00000206616.1 snRNA RNU6-741P 3 +23664 chr15 HAVANA gene 23912409 23941716 591.0 + 0 ENSG00000261622.1 lincRNA AC021439.1 2 OTTHUMG00000172886.1 +23665 chr15 HAVANA gene 23975172 24003435 420.0 + 0 ENSG00000260232.1 lincRNA PWRN4 2 OTTHUMG00000172887.1 +23666 chr15 HAVANA gene 24162754 24169948 4824.0 - 0 ENSG00000260551.1 lincRNA PWRN2 2 OTTHUMG00000173073.3 +23667 chr15 HAVANA gene 24206784 24225854 556.0 + 0 ENSG00000260780.1 lincRNA AC087463.1 2 OTTHUMG00000176383.1 +23668 chr15 HAVANA gene 24238145 24240192 472.0 - 0 ENSG00000260959.1 lincRNA AC087463.2 2 OTTHUMG00000176385.1 +23669 chr15 HAVANA gene 24235078 24276829 865.0 + 0 ENSG00000261621.1 lincRNA AC087463.4 2 OTTHUMG00000176384.1 +23670 chr15 HAVANA gene 24299749 24300638 415.0 + 0 ENSG00000261598.1 lincRNA AC087463.3 2 OTTHUMG00000176386.1 +23671 chr15 HAVANA gene 24441127 24447967 849.0 + 0 ENSG00000260760.1 lincRNA PWRN3 2 OTTHUMG00000176387.1 +23672 chr15 HAVANA gene 24493137 24652130 4833.0 + 0 ENSG00000259905.5 lincRNA PWRN1 2 OTTHUMG00000173077.4 +23673 chr15 HAVANA gene 24675868 24683393 7526.0 + 0 ENSG00000185823.3 protein_coding NPAP1 2 OTTHUMG00000129179.1 +23674 chr15 HAVANA gene 24848355 24852253 3899.0 + 0 ENSG00000280118.2 processed_transcript AC090983.1 2 OTTHUMG00000176877.3 overlapping_locus +23675 chr15 HAVANA gene 24908932 24909825 894.0 - 0 ENSG00000241061.3 processed_pseudogene RPL5P1 1 OTTHUMG00000157866.1 pseudo_consens +23676 chr15 HAVANA gene 24910874 24911125 252.0 - 0 ENSG00000242088.1 processed_pseudogene AC090602.1 1 OTTHUMG00000157867.1 pseudo_consens +23677 chr15 HAVANA gene 24954986 24977850 1175.0 + 0 ENSG00000273173.5 protein_coding SNURF 2 OTTHUMG00000186421.30 overlapping_locus +23678 chr15 HAVANA gene 24823637 24978723 2929.0 + 0 ENSG00000128739.22 protein_coding SNRPN 1 OTTHUMG00000129180.42 overlapping_locus +23679 chr15 ENSEMBL gene 24981994 24982068 75.0 + 0 ENSG00000276314.1 snoRNA SNORD107 3 +23680 chr15 ENSEMBL gene 24985100 24985166 67.0 + 0 ENSG00000276610.1 snoRNA SNORD64 3 +23681 chr15 HAVANA gene 24984864 24985173 310.0 + 0 ENSG00000270704.3 sense_intronic AC124312.4 2 OTTHUMG00000184193.1 ncRNA_host,overlapping_locus +23682 chr15 ENSEMBL gene 24986925 24986995 71.0 + 0 ENSG00000239014.1 snoRNA SNORD108 3 +23683 chr15 HAVANA gene 24985053 24988232 3180.0 + 0 ENSG00000279192.1 TEC PWAR5 2 OTTHUMG00000184194.1 ncRNA_host,overlapping_locus +23684 chr15 HAVANA gene 24991486 24991753 268.0 + 0 ENSG00000271347.1 sense_intronic AC124312.5 2 OTTHUMG00000184195.1 overlapping_locus +23685 chr15 HAVANA gene 24955034 25000276 1590.0 + 0 ENSG00000214265.11 protein_coding AC124312.1 2 OTTHUMG00000129181.11 ncRNA_host,overlapping_locus +23686 chr15 HAVANA gene 25027736 25032047 427.0 - 0 ENSG00000257647.1 lincRNA AC124312.2 2 OTTHUMG00000170275.1 +23687 chr15 HAVANA gene 25031873 25036490 4618.0 + 0 ENSG00000257151.1 lincRNA PWAR6 2 OTTHUMG00000170276.1 overlapping_locus +23688 chr15 ENSEMBL gene 25041974 25042040 67.0 + 0 ENSG00000274640.1 snoRNA SNORD109A 3 +23689 chr15 ENSEMBL gene 25051477 25051571 95.0 + 0 ENSG00000207063.1 snoRNA SNORD116-1 3 +23690 chr15 ENSEMBL gene 25054210 25054304 95.0 + 0 ENSG00000207001.1 snoRNA SNORD116-2 3 +23691 chr15 ENSEMBL gene 25056860 25056954 95.0 + 0 ENSG00000207014.1 snoRNA SNORD116-3 3 +23692 chr15 ENSEMBL gene 25059538 25059633 96.0 + 0 ENSG00000275529.1 snoRNA SNORD116-4 3 +23693 chr15 ENSEMBL gene 25062333 25062427 95.0 + 0 ENSG00000207191.1 snoRNA SNORD116-5 3 +23694 chr15 ENSEMBL gene 25065026 25065121 96.0 + 0 ENSG00000207442.1 snoRNA SNORD116-6 3 +23695 chr15 ENSEMBL gene 25067788 25067882 95.0 + 0 ENSG00000207133.1 snoRNA SNORD116-7 3 +23696 chr15 ENSEMBL gene 25070432 25070526 95.0 + 0 ENSG00000207093.1 snoRNA SNORD116-8 3 +23697 chr15 ENSEMBL gene 25073107 25073201 95.0 + 0 ENSG00000206727.1 snoRNA SNORD116-9 3 +23698 chr15 ENSEMBL gene 25074114 25074215 102.0 + 0 ENSG00000200661.1 snoRNA SNORD116-10 3 +23699 chr15 ENSEMBL gene 25075929 25076020 92.0 + 0 ENSG00000206609.1 snoRNA SNORD116-11 3 +23700 chr15 ENSEMBL gene 25077051 25077142 92.0 + 0 ENSG00000207197.1 snoRNA SNORD116-12 3 +23701 chr15 ENSEMBL gene 25079058 25079149 92.0 + 0 ENSG00000207137.1 snoRNA SNORD116-13 3 +23702 chr15 ENSEMBL gene 25080142 25080233 92.0 + 0 ENSG00000206621.1 snoRNA SNORD116-14 3 +23703 chr15 ENSEMBL gene 25081287 25081378 92.0 + 0 ENSG00000207174.1 snoRNA SNORD116-15 3 +23704 chr15 ENSEMBL gene 25082768 25082859 92.0 + 0 ENSG00000207263.1 snoRNA SNORD116-16 3 +23705 chr15 ENSEMBL gene 25083588 25083679 92.0 + 0 ENSG00000206656.1 snoRNA SNORD116-17 3 +23706 chr15 ENSEMBL gene 25085385 25085476 92.0 + 0 ENSG00000206688.1 snoRNA SNORD116-18 3 +23707 chr15 ENSEMBL gene 25086527 25086618 92.0 + 0 ENSG00000207460.1 snoRNA SNORD116-19 3 +23708 chr15 ENSEMBL gene 25087662 25087753 92.0 + 0 ENSG00000278715.1 snoRNA SNORD116-20 3 +23709 chr15 ENSEMBL gene 25088804 25088895 92.0 + 0 ENSG00000277785.1 snoRNA SNORD116-21 3 +23710 chr15 HAVANA gene 25087661 25088896 1236.0 + 0 ENSG00000261069.3 lincRNA AC124312.3 2 OTTHUMG00000176878.1 ncRNA_host,overlapping_locus +23711 chr15 ENSEMBL gene 25089923 25090014 92.0 + 0 ENSG00000275127.1 snoRNA SNORD116-22 3 +23712 chr15 ENSEMBL gene 25091786 25091877 92.0 + 0 ENSG00000207375.1 snoRNA SNORD116-23 3 +23713 chr15 HAVANA gene 25091960 25092377 418.0 - 0 ENSG00000279735.2 TEC AC124312.6 2 OTTHUMG00000192051.1 +23714 chr15 ENSEMBL gene 25094037 25094128 92.0 + 0 ENSG00000207279.1 snoRNA SNORD116-24 3 +23715 chr15 ENSEMBL gene 25097663 25097754 92.0 + 0 ENSG00000252326.1 snoRNA SNORD116-25 3 +23716 chr15 ENSEMBL gene 25099499 25099594 96.0 + 0 ENSG00000251815.1 snoRNA SNORD116-26 3 +23717 chr15 ENSEMBL gene 25101575 25101666 92.0 + 0 ENSG00000251896.1 snoRNA SNORD116-27 3 +23718 chr15 ENSEMBL gene 25104642 25104732 91.0 + 0 ENSG00000278123.1 snoRNA SNORD116-28 3 +23719 chr15 ENSEMBL gene 25106521 25106603 83.0 + 0 ENSG00000207245.1 snoRNA SNORD116-29 3 +23720 chr15 ENSEMBL gene 25108268 25108352 85.0 + 0 ENSG00000252277.1 snoRNA SNORD116-30 3 +23721 chr15 HAVANA gene 25130978 25131337 360.0 + 0 ENSG00000270523.1 sense_intronic AC124303.1 2 OTTHUMG00000184197.1 overlapping_locus +23722 chr15 HAVANA gene 25135642 25138055 2414.0 + 0 ENSG00000279050.1 TEC PWAR1 2 OTTHUMG00000176879.1 overlapping_locus +23723 chr15 ENSEMBL gene 25159221 25159279 59.0 + 0 ENSG00000212428.1 snoRNA RF00105 3 +23724 chr15 HAVANA gene 25169337 25169676 340.0 - 0 ENSG00000270814.1 processed_pseudogene TMEM261P1 1 OTTHUMG00000184800.1 pseudo_consens +23725 chr15 ENSEMBL gene 25170723 25170804 82.0 + 0 ENSG00000201831.1 snoRNA SNORD115-1 3 +23726 chr15 ENSEMBL gene 25172635 25172716 82.0 + 0 ENSG00000199712.1 snoRNA SNORD115-2 3 +23727 chr15 ENSEMBL gene 25174927 25175008 82.0 + 0 ENSG00000199970.1 snoRNA SNORD115-3 3 +23728 chr15 ENSEMBL gene 25176832 25176913 82.0 + 0 ENSG00000200680.1 snoRNA SNORD115-4 3 +23729 chr15 ENSEMBL gene 25178738 25178819 82.0 + 0 ENSG00000200503.1 snoRNA SNORD115-5 3 +23730 chr15 ENSEMBL gene 25180497 25180578 82.0 + 0 ENSG00000200812.1 snoRNA SNORD115-6 3 +23731 chr15 ENSEMBL gene 25182385 25182466 82.0 + 0 ENSG00000278089.1 snoRNA SNORD115-7 3 +23732 chr15 ENSEMBL gene 25184306 25184387 82.0 + 0 ENSG00000200726.1 snoRNA SNORD115-8 3 +23733 chr15 ENSEMBL gene 25185631 25185712 82.0 + 0 ENSG00000199782.1 snoRNA SNORD115-9 3 +23734 chr15 ENSEMBL gene 25187536 25187616 81.0 + 0 ENSG00000201943.1 snoRNA SNORD115-10 3 +23735 chr15 ENSEMBL gene 25189414 25189495 82.0 + 0 ENSG00000200486.1 snoRNA SNORD115-11 3 +23736 chr15 ENSEMBL gene 25191416 25191497 82.0 + 0 ENSG00000199453.1 snoRNA SNORD115-12 3 +23737 chr15 ENSEMBL gene 25193321 25193402 82.0 + 0 ENSG00000273835.1 snoRNA SNORD115-13 3 +23738 chr15 ENSEMBL gene 25194921 25195001 81.0 + 0 ENSG00000199960.1 snoRNA SNORD115-14 3 +23739 chr15 ENSEMBL gene 25197576 25197656 81.0 + 0 ENSG00000201679.1 snoRNA SNORD115-15 3 +23740 chr15 ENSEMBL gene 25199448 25199529 82.0 + 0 ENSG00000200757.1 snoRNA SNORD115-16 3 +23741 chr15 ENSEMBL gene 25201323 25201404 82.0 + 0 ENSG00000201482.1 snoRNA SNORD115-17 3 +23742 chr15 ENSEMBL gene 25203227 25203308 82.0 + 0 ENSG00000200163.1 snoRNA SNORD115-18 3 +23743 chr15 ENSEMBL gene 25204357 25204438 82.0 + 0 ENSG00000199968.1 snoRNA SNORD115-19 3 +23744 chr15 ENSEMBL gene 25206262 25206343 82.0 + 0 ENSG00000201969.1 snoRNA SNORD115-20 3 +23745 chr15 ENSEMBL gene 25208083 25208163 81.0 + 0 ENSG00000199833.1 snoRNA SNORD115-21 3 +23746 chr15 ENSEMBL gene 25209918 25209999 82.0 + 0 ENSG00000201326.1 snoRNA SNORD115-22 3 +23747 chr15 ENSEMBL gene 25211796 25211877 82.0 + 0 ENSG00000201331.1 snoRNA SNORD115-23 3 +23748 chr15 ENSEMBL gene 25213648 25213729 82.0 + 0 ENSG00000200398.1 snoRNA SNORD115-24 3 +23749 chr15 ENSEMBL gene 25215541 25215622 82.0 + 0 ENSG00000199489.1 snoRNA SNORD115-25 3 +23750 chr15 ENSEMBL gene 25218617 25218698 82.0 + 0 ENSG00000275524.1 snoRNA SNORD115-26 3 +23751 chr15 ENSEMBL gene 25220497 25220578 82.0 + 0 ENSG00000201300.1 snoRNA SNORD115-27 3 +23752 chr15 ENSEMBL gene 25222348 25222428 81.0 + 0 ENSG00000200801.1 snoRNA SNORD115-28 3 +23753 chr15 ENSEMBL gene 25223246 25223327 82.0 + 0 ENSG00000199704.1 snoRNA SNORD115-29 3 +23754 chr15 ENSEMBL gene 25225203 25225284 82.0 + 0 ENSG00000200987.1 snoRNA SNORD115-30 3 +23755 chr15 ENSEMBL gene 25227109 25227190 82.0 + 0 ENSG00000202188.1 snoRNA SNORD115-31 3 +23756 chr15 ENSEMBL gene 25228967 25229048 82.0 + 0 ENSG00000200949.1 snoRNA SNORD115-32 3 +23757 chr15 ENSEMBL gene 25230838 25230919 82.0 + 0 ENSG00000200593.1 snoRNA SNORD115-33 3 +23758 chr15 ENSEMBL gene 25232387 25232468 82.0 + 0 ENSG00000199311.1 snoRNA SNORD115-34 3 +23759 chr15 ENSEMBL gene 25234247 25234328 82.0 + 0 ENSG00000201992.1 snoRNA SNORD115-35 3 +23760 chr15 ENSEMBL gene 25236085 25236166 82.0 + 0 ENSG00000202499.1 snoRNA SNORD115-36 3 +23761 chr15 ENSEMBL gene 25237986 25238067 82.0 + 0 ENSG00000200638.1 snoRNA SNORD115-37 3 +23762 chr15 ENSEMBL gene 25239838 25239919 82.0 + 0 ENSG00000201907.1 snoRNA SNORD115-38 3 +23763 chr15 ENSEMBL gene 25241746 25241827 82.0 + 0 ENSG00000200564.1 snoRNA SNORD115-39 3 +23764 chr15 ENSEMBL gene 25243614 25243695 82.0 + 0 ENSG00000272460.1 snoRNA SNORD115-40 3 +23765 chr15 ENSEMBL gene 25245478 25245559 82.0 + 0 ENSG00000200478.1 snoRNA SNORD115-41 3 +23766 chr15 ENSEMBL gene 25247345 25247426 82.0 + 0 ENSG00000201143.1 snoRNA SNORD115-42 3 +23767 chr15 ENSEMBL gene 25249198 25249279 82.0 + 0 ENSG00000202373.1 snoRNA SNORD115-43 3 +23768 chr15 ENSEMBL gene 25250859 25250940 82.0 + 0 ENSG00000202261.1 snoRNA SNORD115-44 3 +23769 chr15 HAVANA gene 25255579 25257027 1449.0 + 0 ENSG00000280234.1 TEC AC124303.2 2 OTTHUMG00000176880.1 overlapping_locus +23770 chr15 ENSEMBL gene 25264510 25264590 81.0 + 0 ENSG00000212380.1 snoRNA SNORD115-45 3 +23771 chr15 ENSEMBL gene 25266591 25266661 71.0 + 0 ENSG00000276844.1 snoRNA SNORD115-46 3 +23772 chr15 ENSEMBL gene 25268466 25268551 86.0 + 0 ENSG00000212528.1 snoRNA SNORD115-47 3 +23773 chr15 ENSEMBL gene 25269783 25269858 76.0 + 0 ENSG00000201634.1 snoRNA SNORD115-48 3 +23774 chr15 ENSEMBL gene 25278343 25278409 67.0 + 0 ENSG00000239169.1 snoRNA SNORD109B 3 +23775 chr15 HAVANA gene 25345633 25347235 1603.0 - 0 ENSG00000261529.1 sense_intronic AC100774.1 2 OTTHUMG00000176881.1 overlapping_locus +23776 chr15 HAVANA gene 24978583 25419462 43324.0 + 0 ENSG00000224078.13 processed_transcript SNHG14 2 OTTHUMG00000056661.11 ncRNA_host,overlapping_locus +23777 chr15 HAVANA gene 25333728 25439056 12813.0 - 0 ENSG00000114062.19 protein_coding UBE3A 1 OTTHUMG00000171548.13 overlapping_locus +23778 chr15 HAVANA gene 25484831 25578791 2491.0 - 0 ENSG00000235731.1 lincRNA LINC02250 2 OTTHUMG00000056663.1 +23779 chr15 HAVANA gene 25580969 25581122 154.0 + 0 ENSG00000223628.2 processed_pseudogene AC023449.1 1 OTTHUMG00000056665.2 pseudo_consens +23780 chr15 HAVANA gene 25708470 25710869 2400.0 - 0 ENSG00000274307.1 sense_intronic AC023449.2 2 OTTHUMG00000186727.1 overlapping_locus +23781 chr15 ENSEMBL gene 25738508 25738620 113.0 + 0 ENSG00000222123.1 rRNA_pseudogene RNA5SP390 3 +23782 chr15 ENSEMBL gene 25848747 25848825 79.0 - 0 ENSG00000266517.1 miRNA MIR4715 3 +23783 chr15 HAVANA gene 25677273 25865172 8409.0 - 0 ENSG00000206190.11 protein_coding ATP10A 1 OTTHUMG00000171703.2 ncRNA_host,overlapping_locus +23784 chr15 HAVANA gene 25865295 25877211 729.0 + 0 ENSG00000259011.1 lincRNA AC016266.1 2 OTTHUMG00000171718.1 +23785 chr15 HAVANA gene 25928146 25928575 430.0 - 0 ENSG00000258965.2 processed_pseudogene AC044913.1 1 OTTHUMG00000171720.2 pseudo_consens +23786 chr15 ENSEMBL gene 26008940 26009074 135.0 - 0 ENSG00000212604.1 snoRNA RF00554 3 +23787 chr15 HAVANA gene 26050538 26052276 877.0 - 0 ENSG00000258931.1 lincRNA AC100836.1 2 OTTHUMG00000171721.1 +23788 chr15 HAVANA gene 25902360 26053120 2355.0 + 0 ENSG00000206187.3 lincRNA LINC02346 2 OTTHUMG00000171719.1 +23789 chr15 HAVANA gene 26115813 26133037 1994.0 + 0 ENSG00000259150.5 lincRNA LINC00929 2 OTTHUMG00000171722.1 +23790 chr15 HAVANA gene 26395072 26446774 949.0 + 0 ENSG00000235160.1 lincRNA LINC02248 2 OTTHUMG00000056666.1 +23791 chr15 HAVANA gene 26557598 26557937 340.0 - 0 ENSG00000278840.1 sense_intronic AC009878.1 2 OTTHUMG00000186728.1 overlapping_locus +23792 chr15 HAVANA gene 26657030 26658763 595.0 - 0 ENSG00000235518.2 lincRNA AC011196.1 2 OTTHUMG00000056662.2 overlapping_locus +23793 chr15 HAVANA gene 26851132 26851610 479.0 - 0 ENSG00000242793.1 processed_pseudogene AC135999.1 1 OTTHUMG00000157870.1 pseudo_consens,overlapping_locus +23794 chr15 HAVANA gene 26543546 26939539 13886.0 - 0 ENSG00000166206.14 protein_coding GABRB3 2 OTTHUMG00000129231.9 overlapping_locus +23795 chr15 HAVANA gene 26866363 26949207 4154.0 + 0 ENSG00000186297.11 protein_coding GABRA5 2 OTTHUMG00000171824.5 +23796 chr15 HAVANA gene 26964917 26970385 617.0 + 0 ENSG00000259122.2 unprocessed_pseudogene TVP23BP1 1 OTTHUMG00000171825.2 pseudo_consens +23797 chr15 HAVANA gene 27157615 27161319 970.0 - 0 ENSG00000228740.2 antisense GABRG3-AS1 2 OTTHUMG00000056664.2 +23798 chr15 HAVANA gene 27208089 27208635 547.0 - 0 ENSG00000214254.3 processed_pseudogene AC136896.1 1 OTTHUMG00000056660.1 pseudo_consens +23799 chr15 ENSEMBL gene 27280318 27280436 119.0 - 0 ENSG00000200326.1 rRNA_pseudogene RNA5SP391 3 +23800 chr15 HAVANA gene 27340524 27340804 281.0 + 0 ENSG00000258624.1 processed_pseudogene SERPINE4P 1 OTTHUMG00000171826.1 pseudo_consens,overlapping_locus +23801 chr15 HAVANA gene 27362310 27366398 4089.0 + 0 ENSG00000261426.1 sense_intronic AC144833.1 2 OTTHUMG00000171827.1 overlapping_locus +23802 chr15 HAVANA gene 27418796 27420735 380.0 - 0 ENSG00000258970.1 antisense AC104002.1 2 OTTHUMG00000171828.1 +23803 chr15 HAVANA gene 27422381 27428338 318.0 + 0 ENSG00000259152.1 sense_intronic AC104002.2 2 OTTHUMG00000171829.1 overlapping_locus +23804 chr15 HAVANA gene 27483035 27541991 1362.0 - 0 ENSG00000259168.1 antisense AC104002.3 2 OTTHUMG00000171830.1 +23805 chr15 HAVANA gene 26971282 27541991 12595.0 + 0 ENSG00000182256.12 protein_coding GABRG3 1 OTTHUMG00000044462.5 overlapping_locus +23806 chr15 HAVANA gene 27621534 27629289 336.0 + 0 ENSG00000258594.1 lincRNA AC021979.1 2 OTTHUMG00000171831.1 +23807 chr15 HAVANA gene 27684498 27685768 209.0 - 0 ENSG00000258853.1 lincRNA AC021979.2 2 OTTHUMG00000171832.1 +23808 chr15 HAVANA gene 27775621 27776798 418.0 + 0 ENSG00000232394.1 antisense AC090696.1 1 OTTHUMG00000128937.1 +23809 chr15 HAVANA gene 27895704 27896582 879.0 + 0 ENSG00000228992.2 processed_pseudogene RPL5P32 1 OTTHUMG00000128936.2 pseudo_consens +23810 chr15 HAVANA gene 27754875 28099358 3299.0 - 0 ENSG00000104044.15 protein_coding OCA2 1 OTTHUMG00000128871.3 +23811 chr15 HAVANA gene 28315651 28316059 409.0 + 0 ENSG00000256338.2 processed_pseudogene RPL41P2 2 OTTHUMG00000186844.3 +23812 chr15 HAVANA gene 28111040 28322152 20027.0 - 0 ENSG00000128731.16 protein_coding HERC2 1 OTTHUMG00000129251.6 +23813 chr15 HAVANA gene 28332237 28336609 716.0 + 0 ENSG00000261401.1 unprocessed_pseudogene AC091304.3 2 OTTHUMG00000175870.1 +23814 chr15 HAVANA gene 28346490 28346647 158.0 + 0 ENSG00000261561.1 unprocessed_pseudogene AC091304.5 2 OTTHUMG00000175871.1 +23815 chr15 HAVANA gene 28349051 28358080 3100.0 - 0 ENSG00000237850.7 transcribed_unprocessed_pseudogene AC091304.1 1 OTTHUMG00000175872.1 pseudo_consens +23816 chr15 HAVANA gene 28362796 28365731 620.0 - 0 ENSG00000261497.1 unprocessed_pseudogene AC091304.4 2 OTTHUMG00000175873.1 +23817 chr15 ENSEMBL gene 28387196 28387485 290.0 + 0 ENSG00000276891.1 misc_RNA RN7SL238P 3 +23818 chr15 HAVANA gene 28378621 28392018 5663.0 + 0 ENSG00000153684.15 protein_coding GOLGA8F 2 OTTHUMG00000167129.7 ncRNA_host +23819 chr15 HAVANA gene 28402868 28405033 2166.0 + 0 ENSG00000261524.1 processed_pseudogene ABCB10P3 1 OTTHUMG00000175874.1 pseudo_consens +23820 chr15 HAVANA gene 28416449 28416674 226.0 + 0 ENSG00000276928.1 unprocessed_pseudogene AC091304.9 2 OTTHUMG00000187852.1 +23821 chr15 HAVANA gene 28422172 28422373 202.0 + 0 ENSG00000274532.1 unprocessed_pseudogene AC091304.6 2 OTTHUMG00000187853.1 +23822 chr15 ENSEMBL gene 28426491 28426584 94.0 + 0 ENSG00000266039.1 miRNA MIR4509-2 3 +23823 chr15 HAVANA gene 28444144 28444264 121.0 + 0 ENSG00000284628.1 unprocessed_pseudogene AC091304.10 2 OTTHUMG00000192344.1 +23824 chr15 HAVANA gene 28454660 28457783 760.0 - 0 ENSG00000260159.1 unprocessed_pseudogene AC091304.2 2 OTTHUMG00000175875.1 +23825 chr15 HAVANA gene 28473322 28473448 127.0 - 0 ENSG00000261365.1 unprocessed_pseudogene AC138749.4 2 OTTHUMG00000175876.1 +23826 chr15 ENSEMBL gene 28490752 28490845 94.0 - 0 ENSG00000263964.1 miRNA MIR4509-3 3 +23827 chr15 HAVANA gene 28494975 28495182 208.0 - 0 ENSG00000274814.1 unprocessed_pseudogene AC138749.5 2 OTTHUMG00000187855.1 +23828 chr15 HAVANA gene 28506625 28508808 2184.0 - 0 ENSG00000260053.2 processed_pseudogene ABCB10P4 1 OTTHUMG00000175877.2 pseudo_consens +23829 chr15 ENSEMBL gene 28524151 28524440 290.0 - 0 ENSG00000276955.1 misc_RNA RF00017 3 +23830 chr15 HAVANA gene 28519611 28533014 6529.0 - 0 ENSG00000183629.13 protein_coding GOLGA8G 2 OTTHUMG00000167134.3 ncRNA_host +23831 chr15 HAVANA gene 28545912 28549777 622.0 + 0 ENSG00000261041.1 unprocessed_pseudogene AC138749.3 2 OTTHUMG00000175878.1 +23832 chr15 HAVANA gene 28553638 28561379 2472.0 + 0 ENSG00000227717.4 unprocessed_pseudogene AC138749.1 2 OTTHUMG00000175879.1 +23833 chr15 HAVANA gene 28564986 28565152 167.0 - 0 ENSG00000260444.1 unprocessed_pseudogene AC138749.2 2 OTTHUMG00000175880.1 +23834 chr15 HAVANA gene 28575019 28579400 725.0 - 0 ENSG00000261581.1 unprocessed_pseudogene HERC2P11 2 OTTHUMG00000175881.1 +23835 chr15 HAVANA gene 28679405 28682252 546.0 - 0 ENSG00000254398.1 unprocessed_pseudogene AC055876.2 2 OTTHUMG00000167128.1 +23836 chr15 HAVANA gene 28589492 28685264 8310.0 + 0 ENSG00000206149.10 transcribed_unprocessed_pseudogene HERC2P9 2 OTTHUMG00000167114.3 +23837 chr15 ENSEMBL gene 28703554 28703790 237.0 - 0 ENSG00000274632.1 misc_RNA RN7SL719P 3 +23838 chr15 HAVANA gene 28701954 28738384 2202.0 - 0 ENSG00000188626.6 protein_coding GOLGA8M 2 OTTHUMG00000176338.2 ncRNA_host,overlapping_locus +23839 chr15 HAVANA gene 28719377 28738431 557.0 - 0 ENSG00000261480.1 lincRNA GOLGA8M 2 OTTHUMG00000176339.1 overlapping_locus +23840 chr15 HAVANA gene 28737583 28759204 6657.0 + 0 ENSG00000248334.6 transcribed_unprocessed_pseudogene WHAMMP2 2 OTTHUMG00000176340.2 +23841 chr15 HAVANA gene 28763440 28764151 712.0 - 0 ENSG00000260844.2 processed_pseudogene AC055876.4 1 OTTHUMG00000176342.2 pseudo_consens +23842 chr15 HAVANA gene 28789199 28789486 288.0 + 0 ENSG00000256951.1 transcribed_processed_pseudogene AC055876.3 2 OTTHUMG00000147359.2 overlapping_locus +23843 chr15 HAVANA gene 28788243 28792002 965.0 + 0 ENSG00000232431.3 transcribed_unprocessed_pseudogene AC055876.1 2 OTTHUMG00000176343.1 overlapping_locus +23844 chr15 HAVANA gene 28830619 28831182 259.0 - 0 ENSG00000271616.1 processed_pseudogene AC055876.5 1 OTTHUMG00000184806.1 pseudo_consens +23845 chr15 HAVANA gene 28841833 28848675 2965.0 - 0 ENSG00000261649.6 protein_coding GOLGA6L7 2 OTTHUMG00000176345.2 +23846 chr15 HAVANA gene 28857882 28858398 517.0 - 0 ENSG00000270301.1 processed_pseudogene AC174071.1 1 OTTHUMG00000184810.1 pseudo_consens +23847 chr15 HAVANA gene 28789664 28859007 5244.0 + 0 ENSG00000261377.5 transcribed_unprocessed_pseudogene PDCD6IPP2 2 OTTHUMG00000176344.3 overlapping_locus +23848 chr15 HAVANA gene 28970196 28977464 751.0 - 0 ENSG00000259277.1 antisense AC127522.1 2 OTTHUMG00000172184.1 +23849 chr15 HAVANA gene 28884483 29118315 6869.0 + 0 ENSG00000034053.14 protein_coding APBA2 2 OTTHUMG00000129255.4 +23850 chr15 ENSEMBL gene 29233868 29233979 112.0 + 0 ENSG00000252868.1 snoRNA RF00201 3 +23851 chr15 HAVANA gene 29233673 29235137 1465.0 - 0 ENSG00000259299.1 processed_pseudogene AC061965.1 1 OTTHUMG00000172186.1 pseudo_consens,overlapping_locus +23852 chr15 HAVANA gene 29264992 29269829 4838.0 - 0 ENSG00000185115.5 protein_coding NSMCE3 2 OTTHUMG00000129261.2 overlapping_locus,retrogene +23853 chr15 HAVANA gene 29373602 29376956 3355.0 - 0 ENSG00000259690.1 sense_intronic AC107980.1 2 OTTHUMG00000172187.1 overlapping_locus +23854 chr15 HAVANA gene 29120254 29570723 5545.0 - 0 ENSG00000104059.4 protein_coding FAM189A1 2 OTTHUMG00000172185.1 overlapping_locus +23855 chr15 HAVANA gene 29609676 29611212 1537.0 - 0 ENSG00000259814.1 lincRNA AC102941.1 2 OTTHUMG00000173076.1 +23856 chr15 HAVANA gene 29612570 29614274 1232.0 + 0 ENSG00000259300.2 processed_pseudogene TUBBP8 1 OTTHUMG00000172188.3 pseudo_consens +23857 chr15 HAVANA gene 29674990 29680957 2736.0 + 0 ENSG00000256802.2 antisense AC022613.1 2 OTTHUMG00000172189.1 +23858 chr15 HAVANA gene 29728186 29729531 1346.0 - 0 ENSG00000259644.1 sense_intronic AC022613.3 2 OTTHUMG00000172190.1 overlapping_locus +23859 chr15 HAVANA gene 29730713 29730985 273.0 + 0 ENSG00000234664.1 processed_pseudogene HMGN2P5 1 OTTHUMG00000172191.1 pseudo_consens +23860 chr15 HAVANA gene 29822631 29824081 1451.0 + 0 ENSG00000259523.1 antisense AC022613.2 2 OTTHUMG00000172192.1 +23861 chr15 HAVANA gene 29699367 29968865 11265.0 - 0 ENSG00000104067.16 protein_coding TJP1 1 OTTHUMG00000137397.7 overlapping_locus +23862 chr15 HAVANA gene 30005205 30006430 754.0 + 0 ENSG00000259749.1 unprocessed_pseudogene NCAPGP2 1 OTTHUMG00000172195.1 pseudo_consens +23863 chr15 HAVANA gene 30044455 30045296 673.0 + 0 ENSG00000260174.1 processed_pseudogene AC111152.3 1 OTTHUMG00000175634.1 pseudo_consens +23864 chr15 HAVANA gene 30005443 30045848 485.0 - 0 ENSG00000259647.1 lincRNA AC111152.2 2 OTTHUMG00000172196.1 +23865 chr15 HAVANA gene 30052942 30073064 693.0 - 0 ENSG00000229389.2 transcribed_unprocessed_pseudogene AC111152.1 2 OTTHUMG00000156285.3 +23866 chr15 ENSEMBL gene 30091662 30091898 237.0 + 0 ENSG00000273818.1 misc_RNA RN7SL673P 3 +23867 chr15 HAVANA gene 30083053 30093499 2718.0 + 0 ENSG00000179938.12 protein_coding GOLGA8J 2 OTTHUMG00000175635.2 ncRNA_host +23868 chr15 HAVANA gene 30098826 30102093 474.0 - 0 ENSG00000261792.1 unprocessed_pseudogene DNM1P28 2 OTTHUMG00000175636.1 +23869 chr15 ENSEMBL gene 30112198 30112330 133.0 + 0 ENSG00000207432.1 snoRNA RF00096 3 +23870 chr15 HAVANA gene 30103720 30131757 1487.0 + 0 ENSG00000178081.12 transcribed_unprocessed_pseudogene ULK4P3 2 OTTHUMG00000175637.1 +23871 chr15 ENSEMBL gene 30143733 30143969 237.0 + 0 ENSG00000277637.1 misc_RNA RN7SL469P 3 +23872 chr15 HAVANA gene 30135149 30145567 2062.0 + 0 ENSG00000261247.1 protein_coding GOLGA8T 2 OTTHUMG00000175638.2 ncRNA_host +23873 chr15 HAVANA gene 30150872 30153409 452.0 - 0 ENSG00000260897.1 unprocessed_pseudogene DNM1P30 1 OTTHUMG00000175639.1 pseudo_consens +23874 chr15 HAVANA gene 30153933 30154110 178.0 - 0 ENSG00000261747.3 unprocessed_pseudogene AC120045.2 2 OTTHUMG00000175640.1 +23875 chr15 HAVANA gene 30170563 30179943 1198.0 - 0 ENSG00000259906.1 lincRNA AC120045.1 2 OTTHUMG00000175641.1 +23876 chr15 HAVANA gene 30195809 30217552 5281.0 + 0 ENSG00000225930.4 lincRNA LINC02249 2 OTTHUMG00000175642.3 +23877 chr15 HAVANA gene 30223017 30225564 2548.0 + 0 ENSG00000259993.1 processed_pseudogene AC135731.1 1 OTTHUMG00000175643.1 pseudo_consens +23878 chr15 ENSEMBL gene 30254402 30254508 107.0 - 0 ENSG00000206972.1 snRNA RNU6-17P 3 +23879 chr15 HAVANA gene 30282533 30288389 2098.0 + 0 ENSG00000270955.1 processed_pseudogene AC135731.2 1 OTTHUMG00000184854.1 pseudo_consens +23880 chr15 HAVANA gene 30344307 30348236 3930.0 - 0 ENSG00000279417.1 TEC AC019322.4 2 OTTHUMG00000175644.1 +23881 chr15 ENSEMBL gene 30355436 30355540 105.0 + 0 ENSG00000238783.1 misc_RNA RF00019 3 +23882 chr15 ENSEMBL gene 30384959 30385091 133.0 - 0 ENSG00000238519.1 snoRNA RF00096 3 +23883 chr15 HAVANA gene 30380353 30386987 389.0 - 0 ENSG00000263070.1 transcribed_unprocessed_pseudogene AC019322.1 2 OTTHUMG00000177735.1 overlapping_locus +23884 chr15 HAVANA gene 30357766 30393849 6837.0 - 0 ENSG00000166664.13 protein_coding CHRFAM7A 2 OTTHUMG00000175645.4 ncRNA_host,overlapping_locus +23885 chr15 HAVANA gene 30395146 30396368 478.0 + 0 ENSG00000274966.1 unprocessed_pseudogene AC019322.3 2 OTTHUMG00000187857.1 +23886 chr15 ENSEMBL gene 30405307 30405597 291.0 - 0 ENSG00000274424.1 misc_RNA RN7SL196P 3 +23887 chr15 HAVANA gene 30403740 30414162 4433.0 - 0 ENSG00000186399.10 protein_coding GOLGA8R 2 OTTHUMG00000175646.2 ncRNA_host +23888 chr15 HAVANA gene 30420283 30420429 147.0 - 0 ENSG00000271333.1 unprocessed_pseudogene AC019322.2 1 OTTHUMG00000184821.1 pseudo_consens +23889 chr15 HAVANA gene 30487963 30490313 2351.0 + 0 ENSG00000270055.1 sense_intronic AC127502.2 2 OTTHUMG00000183910.1 overlapping_locus +23890 chr15 HAVANA gene 30470779 30507623 2331.0 + 0 ENSG00000215302.8 transcribed_unprocessed_pseudogene AC127502.1 2 OTTHUMG00000175647.1 overlapping_locus +23891 chr15 HAVANA gene 30507377 30513698 1206.0 + 0 ENSG00000283345.1 unprocessed_pseudogene AC127502.3 2 OTTHUMG00000191866.1 +23892 chr15 HAVANA gene 30516079 30517867 1156.0 + 0 ENSG00000260784.1 unprocessed_pseudogene AC026150.2 1 OTTHUMG00000175648.1 pseudo_consens +23893 chr15 HAVANA gene 30540093 30545969 701.0 + 0 ENSG00000260693.1 lincRNA AC026150.1 2 OTTHUMG00000175650.1 +23894 chr15 ENSEMBL gene 30560644 30560934 291.0 + 0 ENSG00000277031.1 misc_RNA RN7SL796P 3 +23895 chr15 HAVANA gene 30552078 30562501 2137.0 + 0 ENSG00000178115.11 protein_coding GOLGA8Q 2 OTTHUMG00000175651.2 ncRNA_host +23896 chr15 HAVANA gene 30567822 30571089 508.0 - 0 ENSG00000259890.1 unprocessed_pseudogene DNM1P50 2 OTTHUMG00000175652.1 +23897 chr15 ENSEMBL gene 30581184 30581316 133.0 + 0 ENSG00000207430.1 snoRNA RF00096 3 +23898 chr15 HAVANA gene 30572738 30600647 1563.0 + 0 ENSG00000260128.6 transcribed_unprocessed_pseudogene ULK4P2 2 OTTHUMG00000175653.1 +23899 chr15 HAVANA gene 30607695 30608193 499.0 - 0 ENSG00000270016.1 antisense AC026150.3 2 OTTHUMG00000183911.1 +23900 chr15 ENSEMBL gene 30612724 30612960 237.0 + 0 ENSG00000277467.1 misc_RNA RN7SL628P 3 +23901 chr15 HAVANA gene 30604126 30614561 1899.0 + 0 ENSG00000261794.1 protein_coding GOLGA8H 2 OTTHUMG00000175654.2 ncRNA_host +23902 chr15 HAVANA gene 30616958 30617749 792.0 + 0 ENSG00000269930.1 lincRNA AC091057.3 2 OTTHUMG00000183912.1 +23903 chr15 HAVANA gene 30616998 30625773 970.0 - 0 ENSG00000247728.2 antisense AC091057.2 2 OTTHUMG00000175655.1 +23904 chr15 HAVANA gene 30624494 30638805 2337.0 + 0 ENSG00000285077.1 protein_coding ARHGAP11B 2 OTTHUMG00000192491.2 overlapping_locus +23905 chr15 HAVANA gene 30648797 30649529 733.0 + 0 ENSG00000269974.1 lincRNA AC091057.4 2 OTTHUMG00000183913.1 overlapping_locus +23906 chr15 ENSEMBL gene 30673750 30673843 94.0 + 0 ENSG00000206846.1 misc_RNA RF00019 3 +23907 chr15 HAVANA gene 30624548 30685606 2297.0 + 0 ENSG00000284906.1 protein_coding AC091057.6 2 OTTHUMG00000192512.2 ncRNA_host,overlapping_locus +23908 chr15 HAVANA gene 30644633 30723495 675.0 + 0 ENSG00000285035.1 transcribed_unprocessed_pseudogene AC091057.7 2 OTTHUMG00000192492.2 overlapping_locus +23909 chr15 HAVANA gene 30750406 30759859 243.0 + 0 ENSG00000284783.1 transcribed_unprocessed_pseudogene AC091057.5 2 OTTHUMG00000192493.1 overlapping_locus +23910 chr15 HAVANA gene 30658717 30772993 5637.0 + 0 ENSG00000187951.11 processed_transcript AC091057.1 2 OTTHUMG00000192513.1 ncRNA_host,overlapping_locus +23911 chr15 ENSEMBL gene 30800160 30800396 237.0 + 0 ENSG00000278696.1 misc_RNA RN7SL82P 3 +23912 chr15 HAVANA gene 30791573 30801859 1755.0 + 0 ENSG00000103832.10 unprocessed_pseudogene GOLGA8UP 1 OTTHUMG00000165688.2 pseudo_consens +23913 chr15 HAVANA gene 30815271 30844153 2393.0 + 0 ENSG00000259845.1 unprocessed_pseudogene HERC2P10 2 OTTHUMG00000175658.1 +23914 chr15 HAVANA gene 30882267 30883231 965.0 - 0 ENSG00000260382.1 processed_pseudogene AC087481.1 1 OTTHUMG00000175659.1 pseudo_consens +23915 chr15 HAVANA gene 30899480 30900327 330.0 + 0 ENSG00000261628.1 unprocessed_pseudogene AC087481.2 2 OTTHUMG00000175660.1 +23916 chr15 HAVANA gene 30926514 30928407 1894.0 + 0 ENSG00000270015.1 sense_intronic AC087481.3 2 OTTHUMG00000183915.1 overlapping_locus +23917 chr15 HAVANA gene 30903852 30943108 6194.0 + 0 ENSG00000198690.9 protein_coding FAN1 1 OTTHUMG00000175661.2 overlapping_locus +23918 chr15 ENSEMBL gene 30956248 30956350 103.0 - 0 ENSG00000212526.1 snRNA RNU6-466P 3 +23919 chr15 HAVANA gene 30938941 30991607 8817.0 - 0 ENSG00000166912.16 protein_coding MTMR10 1 OTTHUMG00000175662.1 ncRNA_host +23920 chr15 HAVANA gene 31002013 31042302 658.0 + 0 ENSG00000259720.1 antisense AC009562.1 2 OTTHUMG00000172221.1 +23921 chr15 ENSEMBL gene 31065032 31065141 110.0 - 0 ENSG00000207702.1 miRNA MIR211 3 +23922 chr15 HAVANA gene 31001061 31161273 7454.0 - 0 ENSG00000134160.13 protein_coding TRPM1 1 OTTHUMG00000129267.5 ncRNA_host +23923 chr15 HAVANA gene 31216020 31224445 1901.0 + 0 ENSG00000259448.2 lincRNA LINC02352 2 OTTHUMG00000172222.2 +23924 chr15 HAVANA gene 31221999 31230838 1563.0 - 0 ENSG00000259772.6 lincRNA AC012236.1 2 OTTHUMG00000172223.2 +23925 chr15 HAVANA gene 31420128 31420662 535.0 + 0 ENSG00000259179.1 processed_pseudogene UBE2CP4 1 OTTHUMG00000129269.2 pseudo_consens,overlapping_locus +23926 chr15 HAVANA gene 31326855 31435665 9409.0 + 0 ENSG00000169926.10 protein_coding KLF13 1 OTTHUMG00000172224.4 overlapping_locus +23927 chr15 HAVANA gene 31453201 31454139 939.0 - 0 ENSG00000259696.2 processed_pseudogene AC104759.1 1 OTTHUMG00000172225.2 pseudo_consens +23928 chr15 HAVANA gene 31765743 31768201 2459.0 - 0 ENSG00000259358.1 processed_pseudogene AC026951.1 1 OTTHUMG00000172235.1 pseudo_consens,overlapping_locus +23929 chr15 HAVANA gene 31787494 31787734 241.0 + 0 ENSG00000277500.1 unprocessed_pseudogene AC026951.2 2 OTTHUMG00000187858.1 +23930 chr15 HAVANA gene 31475398 31870789 14331.0 - 0 ENSG00000169918.9 protein_coding OTUD7A 2 OTTHUMG00000129275.3 overlapping_locus +23931 chr15 ENSEMBL gene 31928303 31928434 132.0 + 0 ENSG00000206849.1 snoRNA RF00425 3 +23932 chr15 HAVANA gene 31923438 32173018 20978.0 + 0 ENSG00000175344.17 protein_coding CHRNA7 2 OTTHUMG00000129285.7 ncRNA_host +23933 chr15 ENSEMBL gene 32175247 32175351 105.0 - 0 ENSG00000201084.1 misc_RNA RF00019 3 +23934 chr15 HAVANA gene 32182551 32186475 3925.0 + 0 ENSG00000279912.1 TEC AC068448.1 2 OTTHUMG00000176883.1 +23935 chr15 HAVANA gene 32250302 32256125 2059.0 - 0 ENSG00000271078.1 processed_pseudogene AC139426.3 1 OTTHUMG00000184825.1 pseudo_consens +23936 chr15 ENSEMBL gene 32284152 32284258 107.0 + 0 ENSG00000207257.1 snRNA RNU6-18P 3 +23937 chr15 HAVANA gene 32313126 32315654 2529.0 - 0 ENSG00000260211.2 processed_pseudogene AC139426.1 1 OTTHUMG00000175392.2 pseudo_consens +23938 chr15 HAVANA gene 32359538 32367784 251.0 + 0 ENSG00000260642.1 lincRNA AC139426.2 2 OTTHUMG00000175393.1 +23939 chr15 HAVANA gene 32384937 32387484 696.0 + 0 ENSG00000261491.1 unprocessed_pseudogene DNM1P31 1 OTTHUMG00000175394.1 pseudo_consens +23940 chr15 ENSEMBL gene 32394365 32394613 249.0 - 0 ENSG00000275776.1 misc_RNA RN7SL185P 3 +23941 chr15 HAVANA gene 32392782 32403292 3231.0 - 0 ENSG00000249931.4 protein_coding GOLGA8K 2 OTTHUMG00000175395.4 ncRNA_host,overlapping_locus +23942 chr15 ENSEMBL gene 32426288 32426420 133.0 - 0 ENSG00000206987.1 snoRNA RF00096 3 +23943 chr15 HAVANA gene 32406597 32434992 1687.0 - 0 ENSG00000261279.5 transcribed_unprocessed_pseudogene ULK4P1 2 OTTHUMG00000162940.2 overlapping_locus +23944 chr15 HAVANA gene 32398956 32435233 1097.0 - 0 ENSG00000215304.3 processed_transcript AC135983.1 2 OTTHUMG00000175396.1 ncRNA_host,overlapping_locus +23945 chr15 HAVANA gene 32436503 32439767 544.0 + 0 ENSG00000261708.1 unprocessed_pseudogene DNM1P32 2 OTTHUMG00000175397.1 +23946 chr15 ENSEMBL gene 32446674 32446964 291.0 - 0 ENSG00000274076.1 misc_RNA RN7SL539P 3 +23947 chr15 HAVANA gene 32445106 32455634 2166.0 - 0 ENSG00000206127.10 protein_coding GOLGA8O 2 OTTHUMG00000162878.4 ncRNA_host +23948 chr15 HAVANA gene 32461666 32461809 144.0 - 0 ENSG00000270789.1 processed_pseudogene AC135983.5 1 OTTHUMG00000184828.1 pseudo_consens +23949 chr15 HAVANA gene 32489267 32491586 1262.0 - 0 ENSG00000261375.1 unprocessed_pseudogene AC135983.4 2 OTTHUMG00000175398.1 +23950 chr15 HAVANA gene 32494003 32500346 1226.0 - 0 ENSG00000254912.2 unprocessed_pseudogene AC135983.3 2 OTTHUMG00000166829.2 +23951 chr15 HAVANA gene 32519848 32536926 2846.0 - 0 ENSG00000223509.8 transcribed_processed_pseudogene AC135983.2 2 OTTHUMG00000175399.3 +23952 chr15 HAVANA gene 32583612 32584312 701.0 + 0 ENSG00000276724.1 lincRNA AC123768.4 2 OTTHUMG00000186803.1 +23953 chr15 HAVANA gene 32536047 32587613 909.0 + 0 ENSG00000261064.1 lincRNA LINC02256 2 OTTHUMG00000175400.1 +23954 chr15 ENSEMBL gene 32602121 32602411 291.0 + 0 ENSG00000277464.1 misc_RNA RN7SL286P 3 +23955 chr15 HAVANA gene 32593456 32607310 7602.0 + 0 ENSG00000232653.8 protein_coding GOLGA8N 2 OTTHUMG00000175401.4 ncRNA_host +23956 chr15 HAVANA gene 32613733 32615111 732.0 + 0 ENSG00000244952.2 lincRNA AC123768.2 2 OTTHUMG00000175402.1 +23957 chr15 HAVANA gene 32586105 32615158 1232.0 - 0 ENSG00000262728.5 antisense AC123768.3 2 OTTHUMG00000186804.1 +23958 chr15 HAVANA gene 32615144 32639949 6428.0 + 0 ENSG00000198826.10 protein_coding ARHGAP11A 1 OTTHUMG00000129289.3 +23959 chr15 HAVANA gene 32624106 32641615 2228.0 - 0 ENSG00000285948.1 antisense AC123768.5 2 OTTHUMG00000192957.1 +23960 chr15 HAVANA gene 32656084 32673065 750.0 - 0 ENSG00000241818.1 antisense AC123768.1 2 OTTHUMG00000159446.1 +23961 chr15 HAVANA gene 32641676 32697098 2196.0 + 0 ENSG00000166922.8 protein_coding SCG5 1 OTTHUMG00000159447.2 +23962 chr15 HAVANA gene 32717270 32719007 1738.0 - 0 ENSG00000259721.1 lincRNA AC090877.2 2 OTTHUMG00000172200.1 +23963 chr15 HAVANA gene 32717974 32745107 14606.0 + 0 ENSG00000166923.10 protein_coding GREM1 2 OTTHUMG00000129319.4 +23964 chr15 HAVANA gene 32836983 32837326 344.0 - 0 ENSG00000259392.2 transcribed_processed_pseudogene AC090877.1 1 OTTHUMG00000172232.2 pseudo_consens,overlapping_locus +23965 chr15 ENSEMBL gene 32970727 32970791 65.0 + 0 ENSG00000212415.1 snoRNA RF00591 3 +23966 chr15 HAVANA gene 33012119 33013068 950.0 + 0 ENSG00000259686.1 processed_pseudogene HNRNPA1P71 1 OTTHUMG00000172233.1 pseudo_consens +23967 chr15 HAVANA gene 33105758 33106236 479.0 - 0 ENSG00000279958.1 TEC AC019278.1 2 OTTHUMG00000172916.1 overlapping_locus +23968 chr15 HAVANA gene 32765545 33194733 20084.0 - 0 ENSG00000248905.8 protein_coding FMN1 1 OTTHUMG00000172201.4 overlapping_locus +23969 chr15 HAVANA gene 33235552 33247621 3023.0 - 0 ENSG00000215296.10 transcribed_unitary_pseudogene TMCO5B 2 OTTHUMG00000167569.2 +23970 chr15 HAVANA gene 33303657 33310659 561.0 - 0 ENSG00000259446.5 antisense AC055874.1 2 OTTHUMG00000172252.1 +23971 chr15 ENSEMBL gene 33722492 33722596 105.0 + 0 ENSG00000200008.1 misc_RNA RF00019 3 +23972 chr15 HAVANA gene 33850538 33851178 641.0 - 0 ENSG00000276702.1 antisense AC010809.3 2 OTTHUMG00000186805.1 +23973 chr15 HAVANA gene 33851785 33856809 964.0 - 0 ENSG00000259408.2 antisense AC010809.2 2 OTTHUMG00000172337.2 +23974 chr15 HAVANA gene 33858602 33864825 562.0 - 0 ENSG00000259287.2 antisense AC010809.1 2 OTTHUMG00000172338.2 +23975 chr15 HAVANA gene 33310945 33866121 20370.0 + 0 ENSG00000198838.13 protein_coding RYR3 2 OTTHUMG00000172253.8 ncRNA_host +23976 chr15 HAVANA gene 33972059 33972515 457.0 - 0 ENSG00000278472.1 sense_intronic AC009268.2 2 OTTHUMG00000186806.1 overlapping_locus +23977 chr15 HAVANA gene 33990686 33992048 1203.0 + 0 ENSG00000259505.1 processed_pseudogene AC009268.1 1 OTTHUMG00000172254.1 pseudo_consens,overlapping_locus +23978 chr15 HAVANA gene 33866227 34039176 1808.0 - 0 ENSG00000169857.7 protein_coding AVEN 2 OTTHUMG00000129371.2 overlapping_locus +23979 chr15 HAVANA gene 33968720 34067457 5817.0 + 0 ENSG00000184984.9 protein_coding CHRM5 2 OTTHUMG00000129369.5 overlapping_locus +23980 chr15 HAVANA gene 34085911 34086314 404.0 - 0 ENSG00000243094.1 processed_pseudogene AC079203.1 1 OTTHUMG00000157874.1 pseudo_consens,overlapping_locus +23981 chr15 HAVANA gene 34084017 34101948 1538.0 - 0 ENSG00000134153.9 protein_coding EMC7 1 OTTHUMG00000129367.4 overlapping_locus +23982 chr15 HAVANA gene 34102073 34108684 6612.0 + 0 ENSG00000182405.5 protein_coding PGBD4 1 OTTHUMG00000129370.3 +23983 chr15 HAVANA gene 34140674 34210096 7311.0 - 0 ENSG00000134152.10 protein_coding KATNBL1 1 OTTHUMG00000129368.3 +23984 chr15 HAVANA gene 34224999 34230156 4459.0 + 0 ENSG00000128463.12 protein_coding EMC4 1 OTTHUMG00000129411.3 +23985 chr15 HAVANA gene 34255286 34257832 387.0 + 0 ENSG00000259468.1 antisense AC079203.2 2 OTTHUMG00000172339.1 +23986 chr15 ENSEMBL gene 34314728 34314828 101.0 + 0 ENSG00000207091.1 misc_RNA RF00019 3 +23987 chr15 HAVANA gene 34229996 34338060 10056.0 - 0 ENSG00000140199.11 protein_coding SLC12A6 1 OTTHUMG00000129441.4 +23988 chr15 HAVANA gene 34341713 34343177 554.0 - 0 ENSG00000182117.5 protein_coding NOP10 1 OTTHUMG00000129440.3 +23989 chr15 HAVANA gene 34343315 34357737 4196.0 + 0 ENSG00000184507.15 protein_coding NUTM1 1 OTTHUMG00000172348.1 +23990 chr15 HAVANA gene 34358618 34367278 4799.0 - 0 ENSG00000176454.13 protein_coding LPCAT4 1 OTTHUMG00000172349.3 +23991 chr15 HAVANA gene 34373541 34374603 1063.0 - 0 ENSG00000259904.1 processed_pseudogene ACTG1P15 1 OTTHUMG00000173385.1 pseudo_consens +23992 chr15 ENSEMBL gene 34382069 34382150 82.0 - 0 ENSG00000221649.1 miRNA MIR1233-1 3 +23993 chr15 HAVANA gene 34394594 34394931 338.0 + 0 ENSG00000260639.1 processed_pseudogene AC025678.1 2 OTTHUMG00000173386.1 +23994 chr15 HAVANA gene 34409625 34410594 970.0 + 0 ENSG00000261081.1 unprocessed_pseudogene AC025678.2 2 OTTHUMG00000173387.1 +23995 chr15 HAVANA gene 34415450 34420273 4824.0 - 0 ENSG00000279092.1 TEC AC025678.3 2 OTTHUMG00000186808.1 overlapping_locus +23996 chr15 HAVANA gene 34379068 34437466 6750.0 - 0 ENSG00000175265.17 protein_coding GOLGA8A 2 OTTHUMG00000129447.6 ncRNA_host,overlapping_locus +23997 chr15 HAVANA gene 34489002 34490571 1570.0 - 0 ENSG00000259917.1 unprocessed_pseudogene HNRNPLP2 1 OTTHUMG00000173388.1 pseudo_consens +23998 chr15 HAVANA gene 34494420 34495900 1481.0 + 0 ENSG00000261559.1 processed_pseudogene FSCN1P1 1 OTTHUMG00000173389.1 pseudo_consens +23999 chr15 HAVANA gene 34520608 34521791 448.0 + 0 ENSG00000278582.1 unprocessed_pseudogene AC027139.2 2 OTTHUMG00000188120.1 +24000 chr15 ENSEMBL gene 34528290 34528371 82.0 - 0 ENSG00000221065.1 miRNA MIR1233-2 3 +24001 chr15 HAVANA gene 34555870 34556820 951.0 + 0 ENSG00000259892.1 unprocessed_pseudogene AC027139.1 2 OTTHUMG00000173390.1 +24002 chr15 HAVANA gene 34525207 34588503 7670.0 - 0 ENSG00000215252.11 protein_coding GOLGA8B 2 OTTHUMG00000129549.3 ncRNA_host +24003 chr15 ENSEMBL gene 34597458 34597558 101.0 - 0 ENSG00000252425.1 snoRNA RF00425 3 +24004 chr15 HAVANA gene 34651135 34655764 487.0 - 0 ENSG00000261304.1 lincRNA LINC02252 2 OTTHUMG00000173391.1 +24005 chr15 HAVANA gene 34751032 34754965 2889.0 - 0 ENSG00000159248.4 protein_coding GJD2 2 OTTHUMG00000129674.2 +24006 chr15 HAVANA gene 34788095 34795726 4602.0 - 0 ENSG00000159251.7 protein_coding ACTC1 2 OTTHUMG00000129675.5 +24007 chr15 HAVANA gene 34755084 34812923 3094.0 + 0 ENSG00000250007.6 antisense AC087457.1 2 OTTHUMG00000172256.1 +24008 chr15 HAVANA gene 34849137 34850395 1259.0 - 0 ENSG00000259751.1 processed_pseudogene AC018868.2 1 OTTHUMG00000172289.1 pseudo_consens +24009 chr15 HAVANA gene 34943080 34943394 315.0 + 0 ENSG00000231409.3 processed_pseudogene AC018868.1 1 OTTHUMG00000157892.1 pseudo_consens +24010 chr15 HAVANA gene 34851782 34969839 13528.0 - 0 ENSG00000021776.10 protein_coding AQR 2 OTTHUMG00000172257.4 +24011 chr15 HAVANA gene 34978351 34980084 1734.0 + 0 ENSG00000279364.1 TEC AC114546.3 2 OTTHUMG00000172290.1 +24012 chr15 HAVANA gene 34978341 34988287 5439.0 - 0 ENSG00000198146.4 protein_coding ZNF770 2 OTTHUMG00000129689.4 +24013 chr15 HAVANA gene 34999902 35000270 369.0 + 0 ENSG00000280396.1 TEC AC114546.4 2 OTTHUMG00000172743.1 overlapping_locus +24014 chr15 HAVANA gene 34993646 35003221 473.0 + 0 ENSG00000259181.1 lincRNA AC114546.1 2 OTTHUMG00000172303.1 overlapping_locus +24015 chr15 HAVANA gene 35008469 35011191 477.0 + 0 ENSG00000259587.2 lincRNA AC114546.2 2 OTTHUMG00000172304.2 +24016 chr15 HAVANA gene 35081144 35081513 370.0 + 0 ENSG00000259665.1 processed_pseudogene AC021231.3 1 OTTHUMG00000172305.1 pseudo_consens +24017 chr15 HAVANA gene 35084193 35085110 918.0 - 0 ENSG00000255192.5 protein_coding NANOGP8 2 OTTHUMG00000166041.6 retrogene +24018 chr15 HAVANA gene 35092481 35093210 730.0 + 0 ENSG00000259397.3 processed_pseudogene AC021231.2 2 OTTHUMG00000172291.2 +24019 chr15 HAVANA gene 35121573 35122084 512.0 - 0 ENSG00000259592.1 processed_pseudogene PRELID1P4 1 OTTHUMG00000172306.1 pseudo_consens,overlapping_locus +24020 chr15 HAVANA gene 35099022 35169698 1342.0 - 0 ENSG00000259336.1 lincRNA AC021231.1 2 OTTHUMG00000172320.1 overlapping_locus +24021 chr15 HAVANA gene 35181799 35238197 1074.0 + 0 ENSG00000259516.2 transcribed_processed_pseudogene ANP32AP1 1 OTTHUMG00000172321.2 pseudo_consens +24022 chr15 HAVANA gene 35282596 35282980 385.0 + 0 ENSG00000259710.1 processed_pseudogene NUTF2P6 1 OTTHUMG00000172343.1 pseudo_consens +24023 chr15 HAVANA gene 35298249 35299440 1192.0 - 0 ENSG00000259585.2 processed_pseudogene RBM17P4 1 OTTHUMG00000172344.2 pseudo_consens,overlapping_locus +24024 chr15 ENSEMBL gene 35372256 35372364 109.0 - 0 ENSG00000265102.1 miRNA MIR3942 3 +24025 chr15 HAVANA gene 35396221 35396444 224.0 + 0 ENSG00000259688.1 processed_pseudogene AC019288.1 2 OTTHUMG00000172345.1 +24026 chr15 HAVANA gene 35400691 35401768 1078.0 + 0 ENSG00000259411.1 processed_pseudogene HNRNPA1P45 1 OTTHUMG00000172346.1 pseudo_consens +24027 chr15 HAVANA gene 35217345 35546193 9345.0 - 0 ENSG00000134146.11 protein_coding DPH6 2 OTTHUMG00000129759.6 ncRNA_host,overlapping_locus +24028 chr15 HAVANA gene 35774801 35774950 150.0 + 0 ENSG00000259217.2 unprocessed_pseudogene AC068867.1 2 OTTHUMG00000172353.2 overlapping_locus +24029 chr15 HAVANA gene 35546195 35859001 1531.0 + 0 ENSG00000248079.2 lincRNA DPH6-DT 2 OTTHUMG00000172347.1 overlapping_locus +24030 chr15 ENSEMBL gene 35926856 35926923 68.0 + 0 ENSG00000265098.3 miRNA MIR4510 3 +24031 chr15 HAVANA gene 36046082 36049529 632.0 + 0 ENSG00000259245.1 lincRNA AC040918.1 2 OTTHUMG00000172356.1 +24032 chr15 HAVANA gene 35939167 36252257 1294.0 - 0 ENSG00000259639.6 lincRNA AC021351.1 2 OTTHUMG00000172355.2 +24033 chr15 HAVANA gene 36341739 36344166 2428.0 + 0 ENSG00000259395.1 lincRNA AC087516.1 2 OTTHUMG00000172357.1 +24034 chr15 HAVANA gene 36438972 36471016 3666.0 - 0 ENSG00000259737.6 lincRNA AC087516.2 2 OTTHUMG00000172358.2 +24035 chr15 HAVANA gene 36571985 36572212 228.0 + 0 ENSG00000270500.1 processed_pseudogene COX6CP4 1 OTTHUMG00000184862.1 pseudo_consens +24036 chr15 HAVANA gene 36613474 36614198 725.0 + 0 ENSG00000261635.2 processed_pseudogene AC103988.1 1 OTTHUMG00000172660.2 pseudo_consens,overlapping_locus +24037 chr15 HAVANA gene 36617089 36619265 2177.0 + 0 ENSG00000261315.2 transcribed_processed_pseudogene LARP4P 1 OTTHUMG00000172661.2 pseudo_consens,overlapping_locus +24038 chr15 HAVANA gene 36626674 36627775 1102.0 - 0 ENSG00000260582.1 processed_pseudogene TPST2P1 1 OTTHUMG00000172662.1 pseudo_consens +24039 chr15 HAVANA gene 36641186 36669097 565.0 - 0 ENSG00000261191.1 antisense AC013640.1 2 OTTHUMG00000172663.1 +24040 chr15 HAVANA gene 36579611 36810248 9009.0 + 0 ENSG00000186073.12 protein_coding C15orf41 1 OTTHUMG00000172659.7 overlapping_locus +24041 chr15 HAVANA gene 36798596 36818459 2629.0 - 0 ENSG00000223518.5 transcribed_processed_pseudogene CSNK1A1P1 1 OTTHUMG00000172664.3 pseudo_consens +24042 chr15 ENSEMBL gene 36852640 36852859 220.0 + 0 ENSG00000212511.2 snoRNA RF00012 3 +24043 chr15 HAVANA gene 36876379 36887035 1390.0 - 0 ENSG00000259280.1 processed_transcript AC018563.1 2 OTTHUMG00000172258.3 +24044 chr15 ENSEMBL gene 36972821 36972901 81.0 - 0 ENSG00000277202.1 miRNA MIR8063 3 +24045 chr15 ENSEMBL gene 37050828 37050930 103.0 - 0 ENSG00000206676.1 misc_RNA RF00019 3 +24046 chr15 HAVANA gene 37099339 37100173 464.0 + 0 ENSG00000259460.1 antisense AC078909.1 2 OTTHUMG00000172260.1 +24047 chr15 HAVANA gene 36889204 37101299 10798.0 - 0 ENSG00000134138.19 protein_coding MEIS2 1 OTTHUMG00000129781.6 ncRNA_host +24048 chr15 HAVANA gene 37109587 37109984 398.0 + 0 ENSG00000274444.1 lincRNA AC078909.2 2 OTTHUMG00000186810.1 +24049 chr15 ENSEMBL gene 37216617 37216898 282.0 + 0 ENSG00000274216.1 misc_RNA RF00017 3 +24050 chr15 HAVANA gene 37253879 37254952 1074.0 + 0 ENSG00000270304.1 processed_pseudogene AC087283.1 1 OTTHUMG00000184866.1 pseudo_consens +24051 chr15 HAVANA gene 37365027 37490808 463.0 - 0 ENSG00000259434.1 lincRNA AC068875.1 2 OTTHUMG00000172363.1 +24052 chr15 HAVANA gene 37490691 37491103 413.0 + 0 ENSG00000243122.1 processed_pseudogene AC016304.1 1 OTTHUMG00000157896.1 pseudo_consens +24053 chr15 HAVANA gene 37921939 37967724 5313.0 + 0 ENSG00000166069.13 protein_coding TMCO5A 2 OTTHUMG00000129787.3 +24054 chr15 HAVANA gene 37984766 38062340 2448.0 + 0 ENSG00000259225.6 lincRNA LINC02345 2 OTTHUMG00000172364.3 +24055 chr15 HAVANA gene 38069481 38072959 1793.0 - 0 ENSG00000236914.3 lincRNA LINC01852 2 OTTHUMG00000172374.1 +24056 chr15 HAVANA gene 38139595 38226887 2982.0 - 0 ENSG00000259380.5 lincRNA AC087473.1 2 OTTHUMG00000172384.1 +24057 chr15 HAVANA gene 38252326 38357249 8260.0 + 0 ENSG00000166068.12 protein_coding SPRED1 2 OTTHUMG00000172377.3 +24058 chr15 HAVANA gene 38458760 38459540 781.0 - 0 ENSG00000259192.1 processed_pseudogene AC109631.1 1 OTTHUMG00000172378.1 pseudo_consens +24059 chr15 HAVANA gene 38454127 38487710 6851.0 + 0 ENSG00000171262.11 protein_coding FAM98B 2 OTTHUMG00000129831.3 +24060 chr15 HAVANA gene 38502853 38504981 2129.0 + 0 ENSG00000259326.1 antisense AC116158.1 2 OTTHUMG00000172380.1 +24061 chr15 HAVANA gene 38524070 38534655 553.0 + 0 ENSG00000259598.1 antisense AC116158.2 2 OTTHUMG00000172381.1 +24062 chr15 HAVANA gene 38488103 38565575 6097.0 - 0 ENSG00000172575.11 protein_coding RASGRP1 1 OTTHUMG00000172379.2 +24063 chr15 HAVANA gene 38756552 38759413 823.0 - 0 ENSG00000259731.2 lincRNA AC022929.1 2 OTTHUMG00000172383.2 +24064 chr15 HAVANA gene 38851306 38853432 2127.0 - 0 ENSG00000274281.1 lincRNA AC022929.2 2 OTTHUMG00000186811.1 +24065 chr15 HAVANA gene 39019233 39024918 574.0 + 0 ENSG00000259278.1 lincRNA AC087878.1 2 OTTHUMG00000172390.1 +24066 chr15 HAVANA gene 39167739 39180048 1226.0 + 0 ENSG00000259423.2 lincRNA AC113146.1 2 OTTHUMG00000172478.2 +24067 chr15 HAVANA gene 38628005 39180499 8469.0 + 0 ENSG00000175779.2 protein_coding C15orf53 2 OTTHUMG00000172382.3 +24068 chr15 HAVANA gene 39250684 39254845 3078.0 + 0 ENSG00000175746.6 lincRNA C15orf54 2 OTTHUMG00000129843.2 +24069 chr15 HAVANA gene 39300418 39310782 1112.0 - 0 ENSG00000259447.1 lincRNA AC013652.2 2 OTTHUMG00000172479.1 overlapping_locus +24070 chr15 HAVANA gene 38865322 39427195 3242.0 - 0 ENSG00000259345.6 lincRNA AC013652.1 2 OTTHUMG00000172466.3 overlapping_locus +24071 chr15 HAVANA gene 39472703 39481206 1334.0 + 0 ENSG00000259269.1 lincRNA AC109630.1 2 OTTHUMG00000172480.1 +24072 chr15 HAVANA gene 39512335 39519954 721.0 - 0 ENSG00000259390.3 lincRNA AC022196.1 2 OTTHUMG00000172455.4 +24073 chr15 HAVANA gene 39586561 39587293 733.0 + 0 ENSG00000276107.1 sense_intronic AC037198.1 2 OTTHUMG00000186812.1 overlapping_locus +24074 chr15 HAVANA gene 39588357 39588882 526.0 - 0 ENSG00000278621.1 antisense AC037198.2 2 OTTHUMG00000186813.1 +24075 chr15 HAVANA gene 39581079 39599466 9158.0 + 0 ENSG00000137801.10 protein_coding THBS1 2 OTTHUMG00000133665.3 overlapping_locus +24076 chr15 HAVANA gene 39588357 39782830 3452.0 - 0 ENSG00000150667.7 protein_coding FSIP1 2 OTTHUMG00000172456.2 +24077 chr15 HAVANA gene 39782571 39785617 3047.0 + 0 ENSG00000261136.1 antisense AC023908.3 2 OTTHUMG00000173059.1 +24078 chr15 HAVANA gene 39770559 39801333 318.0 - 0 ENSG00000259580.1 processed_transcript AC023908.2 2 OTTHUMG00000172457.1 overlapping_locus +24079 chr15 HAVANA gene 39813223 39815429 567.0 - 0 ENSG00000259432.1 sense_intronic AC023908.1 2 OTTHUMG00000172464.1 overlapping_locus +24080 chr15 HAVANA gene 39799032 39920892 5119.0 - 0 ENSG00000166073.10 protein_coding GPR176 2 OTTHUMG00000129873.4 overlapping_locus +24081 chr15 ENSEMBL gene 39922782 39922886 105.0 - 0 ENSG00000200305.1 misc_RNA RF00019 3 +24082 chr15 HAVANA gene 39921042 39925880 4839.0 + 0 ENSG00000246863.2 lincRNA AC012377.1 2 OTTHUMG00000172417.1 +24083 chr15 HAVANA gene 39951375 39951708 334.0 - 0 ENSG00000259389.2 processed_pseudogene H3F3AP1 1 OTTHUMG00000172418.2 pseudo_consens +24084 chr15 HAVANA gene 39934146 40035591 11957.0 + 0 ENSG00000128829.11 protein_coding EIF2AK4 1 OTTHUMG00000172403.2 +24085 chr15 HAVANA gene 40035739 40039188 2005.0 - 0 ENSG00000140319.10 protein_coding SRP14 2 OTTHUMG00000172391.2 +24086 chr15 HAVANA gene 40039311 40067290 2992.0 + 0 ENSG00000248508.6 lincRNA SRP14-AS1 2 OTTHUMG00000172392.2 +24087 chr15 HAVANA gene 40075204 40078704 864.0 - 0 ENSG00000259584.1 lincRNA AC021755.2 2 OTTHUMG00000172393.1 +24088 chr15 HAVANA gene 40078892 40079347 456.0 + 0 ENSG00000275636.1 lincRNA AC021755.3 2 OTTHUMG00000186814.1 +24089 chr15 HAVANA gene 40088832 40089386 461.0 + 0 ENSG00000259409.1 antisense BMF-AS1 2 OTTHUMG00000172394.1 +24090 chr15 HAVANA gene 40087890 40108892 5447.0 - 0 ENSG00000104081.13 protein_coding BMF 2 OTTHUMG00000129875.3 +24091 chr15 HAVANA gene 40133768 40135214 1447.0 - 0 ENSG00000259239.1 processed_pseudogene AC021755.1 2 OTTHUMG00000172395.1 +24092 chr15 HAVANA gene 40161023 40221136 4476.0 + 0 ENSG00000156970.12 protein_coding BUB1B 2 OTTHUMG00000129877.4 overlapping_locus +24093 chr15 HAVANA gene 40226386 40227069 684.0 + 0 ENSG00000273786.1 sense_intronic AC020658.4 2 OTTHUMG00000186815.1 overlapping_locus +24094 chr15 HAVANA gene 40232082 40236109 4028.0 + 0 ENSG00000260648.3 sense_intronic AC020658.3 2 OTTHUMG00000176889.3 overlapping_locus +24095 chr15 HAVANA gene 40244925 40247366 2442.0 + 0 ENSG00000279537.1 TEC AC020658.7 2 OTTHUMG00000176890.1 overlapping_locus +24096 chr15 HAVANA gene 40250664 40252969 2306.0 - 0 ENSG00000176753.5 processed_transcript C15orf56 2 OTTHUMG00000172399.2 +24097 chr15 HAVANA gene 40258501 40260370 1870.0 + 0 ENSG00000279409.1 TEC AC020658.6 2 OTTHUMG00000176891.1 overlapping_locus +24098 chr15 HAVANA gene 40217428 40276396 3091.0 + 0 ENSG00000259288.6 protein_coding BUB1B-PAK6 2 OTTHUMG00000172398.2 overlapping_locus +24099 chr15 HAVANA gene 40238759 40277487 6457.0 + 0 ENSG00000137843.11 protein_coding PAK6 1 OTTHUMG00000129921.3 overlapping_locus +24100 chr15 HAVANA gene 40281444 40282586 1143.0 - 0 ENSG00000230778.1 protein_coding ANKRD63 2 OTTHUMG00000176892.2 overlapping_locus +24101 chr15 HAVANA gene 40285468 40285909 442.0 - 0 ENSG00000273855.1 sense_intronic AC020658.5 2 OTTHUMG00000186816.1 overlapping_locus +24102 chr15 HAVANA gene 40300670 40301820 568.0 + 0 ENSG00000259307.1 antisense PLCB2-AS1 2 OTTHUMG00000172413.1 +24103 chr15 HAVANA gene 40278176 40307935 7350.0 - 0 ENSG00000137841.11 protein_coding PLCB2 1 OTTHUMG00000172412.3 overlapping_locus +24104 chr15 HAVANA gene 40312352 40313289 938.0 - 0 ENSG00000244705.1 processed_pseudogene AC020658.1 1 OTTHUMG00000157898.1 pseudo_consens +24105 chr15 HAVANA gene 40312615 40316634 4020.0 + 0 ENSG00000259198.1 lincRNA AC020658.2 2 OTTHUMG00000172414.1 +24106 chr15 HAVANA gene 40323664 40326715 3052.0 + 0 ENSG00000259330.2 protein_coding INAFM2 2 OTTHUMG00000172415.2 +24107 chr15 ENSEMBL gene 40331537 40331648 112.0 - 0 ENSG00000252714.1 rRNA_pseudogene RNA5SP392 3 +24108 chr15 HAVANA gene 40331452 40340967 7510.0 - 0 ENSG00000188549.12 protein_coding CCDC9B 2 OTTHUMG00000129981.4 +24109 chr15 HAVANA gene 40351033 40356434 941.0 + 0 ENSG00000233041.8 protein_coding PHGR1 2 OTTHUMG00000172416.1 +24110 chr15 HAVANA gene 40368925 40369640 482.0 - 0 ENSG00000259368.1 antisense AC013356.4 2 OTTHUMG00000172452.1 +24111 chr15 HAVANA gene 40358235 40378639 12754.0 + 0 ENSG00000140323.5 protein_coding DISP2 2 OTTHUMG00000129983.3 +24112 chr15 HAVANA gene 40382721 40394246 3654.0 + 0 ENSG00000128944.13 protein_coding KNSTRN 2 OTTHUMG00000172454.3 +24113 chr15 HAVANA gene 40405795 40435947 6533.0 + 0 ENSG00000128928.8 protein_coding IVD 1 OTTHUMG00000129984.8 +24114 chr15 HAVANA gene 40453444 40454639 584.0 - 0 ENSG00000259364.1 antisense AC013356.3 2 OTTHUMG00000172486.1 +24115 chr15 HAVANA gene 40464193 40466726 729.0 - 0 ENSG00000259211.1 antisense AC013356.2 2 OTTHUMG00000172487.1 +24116 chr15 HAVANA gene 40439721 40468242 5196.0 + 0 ENSG00000140320.11 protein_coding BAHD1 2 OTTHUMG00000129982.2 +24117 chr15 HAVANA gene 40470998 40474571 3574.0 + 0 ENSG00000169105.7 protein_coding CHST14 2 OTTHUMG00000129985.3 +24118 chr15 HAVANA gene 40480752 40481315 564.0 - 0 ENSG00000244251.1 processed_pseudogene AC013356.1 1 OTTHUMG00000157902.1 pseudo_consens +24119 chr15 ENSEMBL gene 40529570 40529673 104.0 + 0 ENSG00000223313.1 snRNA RNU6-516P 3 +24120 chr15 HAVANA gene 40488041 40558019 2321.0 + 0 ENSG00000259536.5 antisense AC091045.1 2 OTTHUMG00000172488.2 ncRNA_host +24121 chr15 HAVANA gene 40528683 40565057 8648.0 - 0 ENSG00000128891.15 protein_coding CCDC32 1 OTTHUMG00000129993.5 +24122 chr15 HAVANA gene 40569300 40574943 2482.0 + 0 ENSG00000166133.17 protein_coding RPUSD2 1 OTTHUMG00000130031.5 +24123 chr15 ENSEMBL gene 40585454 40585751 298.0 - 0 ENSG00000203573.4 misc_RNA RF00017 3 +24124 chr15 ENSEMBL gene 40615665 40615928 264.0 - 0 ENSG00000265814.2 misc_RNA RN7SL376P 3 +24125 chr15 HAVANA gene 40642933 40646857 516.0 + 0 ENSG00000259254.1 sense_intronic AC022405.1 2 OTTHUMG00000172532.1 overlapping_locus +24126 chr15 HAVANA gene 40594020 40664342 10250.0 + 0 ENSG00000137812.19 protein_coding KNL1 2 OTTHUMG00000166532.6 overlapping_locus +24127 chr15 HAVANA gene 40686243 40695107 2177.0 - 0 ENSG00000245849.7 processed_transcript RAD51-AS1 1 OTTHUMG00000166119.4 +24128 chr15 HAVANA gene 40695129 40732158 2177.0 + 0 ENSG00000285396.1 protein_coding AC012476.1 2 OTTHUMG00000192533.1 +24129 chr15 HAVANA gene 40694774 40732339 3046.0 + 0 ENSG00000051180.16 protein_coding RAD51 1 OTTHUMG00000130067.9 +24130 chr15 HAVANA gene 40735884 40755851 5114.0 - 0 ENSG00000137824.15 protein_coding RMDN3 1 OTTHUMG00000130066.3 +24131 chr15 HAVANA gene 40760597 40760874 278.0 + 0 ENSG00000271236.1 processed_pseudogene SUMO2P15 1 OTTHUMG00000184878.1 pseudo_consens +24132 chr15 HAVANA gene 40764020 40767710 1531.0 + 0 ENSG00000137880.5 protein_coding GCHFR 1 OTTHUMG00000130069.4 +24133 chr15 HAVANA gene 40770080 40772449 2370.0 + 0 ENSG00000188277.9 protein_coding C15orf62 2 OTTHUMG00000172536.1 +24134 chr15 HAVANA gene 40765155 40807478 5634.0 - 0 ENSG00000104129.9 protein_coding DNAJC17 2 OTTHUMG00000130065.4 +24135 chr15 HAVANA gene 40807086 40815084 4779.0 + 0 ENSG00000166140.17 protein_coding ZFYVE19 1 OTTHUMG00000172537.4 +24136 chr15 HAVANA gene 40815445 40828709 873.0 - 0 ENSG00000166143.9 protein_coding PPP1R14D 2 OTTHUMG00000130064.3 +24137 chr15 HAVANA gene 40835808 40844387 1239.0 - 0 ENSG00000261183.5 antisense SPINT1-AS1 2 OTTHUMG00000172899.1 +24138 chr15 HAVANA gene 40844018 40858207 3542.0 + 0 ENSG00000166145.14 protein_coding SPINT1 1 OTTHUMG00000130068.4 +24139 chr15 HAVANA gene 40872214 40874289 1705.0 - 0 ENSG00000104140.6 protein_coding RHOV 2 OTTHUMG00000130134.2 +24140 chr15 HAVANA gene 40874433 40874595 163.0 + 0 ENSG00000274798.1 lincRNA AC025166.1 2 OTTHUMG00000186818.1 +24141 chr15 HAVANA gene 40894430 40903975 4049.0 + 0 ENSG00000104142.10 protein_coding VPS18 1 OTTHUMG00000130135.2 +24142 chr15 HAVANA gene 40906811 40910337 1584.0 + 0 ENSG00000251161.3 lincRNA AC020661.1 2 OTTHUMG00000172510.2 +24143 chr15 HAVANA gene 40929333 40939073 4761.0 + 0 ENSG00000128917.7 protein_coding DLL4 2 OTTHUMG00000172511.3 +24144 chr15 HAVANA gene 40948736 40948869 134.0 - 0 ENSG00000259405.1 processed_pseudogene ISCA1P4 1 OTTHUMG00000172512.1 pseudo_consens +24145 chr15 HAVANA gene 40952962 40956519 2058.0 + 0 ENSG00000128965.12 protein_coding CHAC1 2 OTTHUMG00000130208.9 +24146 chr15 HAVANA gene 40999274 41004865 500.0 + 0 ENSG00000259617.1 antisense AC020661.3 2 OTTHUMG00000172518.1 +24147 chr15 HAVANA gene 41011597 41013300 414.0 + 0 ENSG00000259463.1 antisense AC020661.2 2 OTTHUMG00000172519.1 +24148 chr15 HAVANA gene 41016990 41018843 1854.0 - 0 ENSG00000280036.1 sense_intronic AC020661.4 2 OTTHUMG00000172520.1 overlapping_locus +24149 chr15 HAVANA gene 41016807 41027893 712.0 + 0 ENSG00000259521.1 antisense INO80-AS1 2 OTTHUMG00000172515.2 +24150 chr15 HAVANA gene 41108878 41109178 301.0 + 0 ENSG00000259547.1 processed_pseudogene CYCSP2 1 OTTHUMG00000172522.1 pseudo_consens +24151 chr15 HAVANA gene 40978880 41116354 7014.0 - 0 ENSG00000128908.16 protein_coding INO80 2 OTTHUMG00000130209.5 overlapping_locus +24152 chr15 HAVANA gene 41157175 41157342 168.0 - 0 ENSG00000283133.1 processed_pseudogene AC021753.1 2 OTTHUMG00000191734.1 +24153 chr15 HAVANA gene 41163162 41164374 890.0 + 0 ENSG00000157021.9 unprocessed_pseudogene FAM92A1P1 2 OTTHUMG00000167701.3 +24154 chr15 ENSEMBL gene 41191965 41192265 301.0 - 0 ENSG00000240847.3 misc_RNA RN7SL497P 3 +24155 chr15 HAVANA gene 41182725 41230743 3661.0 - 0 ENSG00000178997.11 protein_coding EXD1 2 OTTHUMG00000130232.4 ncRNA_host +24156 chr15 HAVANA gene 41230839 41281890 3950.0 + 0 ENSG00000187446.11 protein_coding CHP1 2 OTTHUMG00000130233.6 +24157 chr15 HAVANA gene 41283990 41309737 12673.0 + 0 ENSG00000247556.6 processed_transcript OIP5-AS1 2 OTTHUMG00000172547.3 overlapping_locus +24158 chr15 HAVANA gene 41309268 41332621 1236.0 - 0 ENSG00000104147.8 protein_coding OIP5 2 OTTHUMG00000130251.4 +24159 chr15 HAVANA gene 41343080 41344225 476.0 + 0 ENSG00000259396.1 sense_intronic AC087721.1 2 OTTHUMG00000172608.1 overlapping_locus +24160 chr15 HAVANA gene 41284013 41380743 2114.0 + 0 ENSG00000285920.1 protein_coding AC087721.2 2 OTTHUMG00000172588.4 overlapping_locus +24161 chr15 HAVANA gene 41332694 41381050 2875.0 + 0 ENSG00000137804.12 protein_coding NUSAP1 1 OTTHUMG00000193352.1 overlapping_locus +24162 chr15 HAVANA gene 41387349 41402519 1790.0 - 0 ENSG00000137806.8 protein_coding NDUFAF1 2 OTTHUMG00000130340.4 +24163 chr15 ENSEMBL gene 41448742 41448844 103.0 - 0 ENSG00000200407.1 snRNA RNU6-1169P 3 +24164 chr15 HAVANA gene 41408408 41483563 5770.0 + 0 ENSG00000137815.14 protein_coding RTF1 2 OTTHUMG00000133744.3 +24165 chr15 HAVANA gene 41493393 41503551 2092.0 + 0 ENSG00000137825.10 protein_coding ITPKA 2 OTTHUMG00000130343.5 +24166 chr15 HAVANA gene 41503638 41513887 3490.0 - 0 ENSG00000062524.15 protein_coding LTK 1 OTTHUMG00000130339.2 +24167 chr15 HAVANA gene 41517176 41544269 7046.0 - 0 ENSG00000103932.11 protein_coding RPAP1 1 OTTHUMG00000130342.3 +24168 chr15 HAVANA gene 41557027 41557435 332.0 + 0 ENSG00000259838.1 unprocessed_pseudogene ELOCP2 2 OTTHUMG00000172717.1 +24169 chr15 HAVANA gene 41557675 41583586 10945.0 + 0 ENSG00000092445.11 protein_coding TYRO3 2 OTTHUMG00000130341.6 +24170 chr15 HAVANA gene 41609466 41612727 709.0 - 0 ENSG00000260926.2 lincRNA AC016134.1 2 OTTHUMG00000172718.2 +24171 chr15 ENSEMBL gene 41691585 41691678 94.0 + 0 ENSG00000207766.1 miRNA MIR626 3 +24172 chr15 HAVANA gene 41718370 41718672 303.0 - 0 ENSG00000270702.1 processed_pseudogene AC073657.2 1 OTTHUMG00000184832.1 pseudo_consens +24173 chr15 HAVANA gene 41770756 41772732 510.0 - 0 ENSG00000260814.2 lincRNA AC073657.1 2 OTTHUMG00000172724.2 +24174 chr15 HAVANA gene 41621224 41773081 17651.0 + 0 ENSG00000174197.16 protein_coding MGA 1 OTTHUMG00000172719.3 ncRNA_host +24175 chr15 HAVANA gene 41774434 41827855 10357.0 + 0 ENSG00000137802.13 protein_coding MAPKBP1 2 OTTHUMG00000160227.2 +24176 chr15 HAVANA gene 41825099 41827936 979.0 - 0 ENSG00000250379.1 antisense AC020659.2 2 OTTHUMG00000160228.1 +24177 chr15 HAVANA gene 41828085 41837581 1971.0 + 0 ENSG00000243789.10 protein_coding JMJD7 1 OTTHUMG00000156810.11 overlapping_locus +24178 chr15 HAVANA gene 41837775 41848147 4446.0 + 0 ENSG00000243708.10 protein_coding PLA2G4B 2 OTTHUMG00000156809.3 overlapping_locus +24179 chr15 HAVANA gene 41828095 41848155 7862.0 + 0 ENSG00000168970.22 protein_coding JMJD7-PLA2G4B 1 OTTHUMG00000044442.6 overlapping_locus +24180 chr15 ENSEMBL gene 41851913 41852029 117.0 - 0 ENSG00000200293.1 rRNA_pseudogene RNA5SP393 3 +24181 chr15 ENSEMBL gene 41866495 41866551 57.0 - 0 ENSG00000264850.1 miRNA MIR4310 3 +24182 chr15 HAVANA gene 41848144 41894077 12338.0 - 0 ENSG00000137877.9 protein_coding SPTBN5 2 OTTHUMG00000172720.2 ncRNA_host +24183 chr15 HAVANA gene 41892793 41898575 3653.0 + 0 ENSG00000174171.5 antisense AC020659.1 2 OTTHUMG00000172721.3 +24184 chr15 HAVANA gene 41908204 41908714 511.0 - 0 ENSG00000278493.1 sense_intronic AC039056.2 2 OTTHUMG00000186822.1 overlapping_locus +24185 chr15 HAVANA gene 41921417 41928883 771.0 + 0 ENSG00000259883.1 antisense EHD4-AS1 2 OTTHUMG00000172723.1 +24186 chr15 HAVANA gene 41895939 41972578 7879.0 - 0 ENSG00000103966.10 protein_coding EHD4 2 OTTHUMG00000130370.3 overlapping_locus +24187 chr15 HAVANA gene 41972763 41999094 2499.0 + 0 ENSG00000246740.2 antisense PLA2G4E-AS1 2 OTTHUMG00000169509.1 +24188 chr15 HAVANA gene 42006132 42010117 467.0 + 0 ENSG00000257797.1 antisense AC039056.1 2 OTTHUMG00000169510.1 +24189 chr15 HAVANA gene 41981582 42051190 5823.0 - 0 ENSG00000188089.13 protein_coding PLA2G4E 2 OTTHUMG00000130371.3 +24190 chr15 HAVANA gene 42067009 42094554 5138.0 - 0 ENSG00000159337.6 protein_coding PLA2G4D 2 OTTHUMG00000172587.2 +24191 chr15 HAVANA gene 42139034 42156636 6103.0 - 0 ENSG00000168907.13 protein_coding PLA2G4F 2 OTTHUMG00000172782.3 +24192 chr15 ENSEMBL gene 42199570 42199666 97.0 - 0 ENSG00000207712.1 miRNA MIR627 3 +24193 chr15 HAVANA gene 42158701 42208316 8354.0 - 0 ENSG00000166887.15 protein_coding VPS39 2 OTTHUMG00000130467.4 ncRNA_host +24194 chr15 HAVANA gene 42208413 42226990 988.0 + 0 ENSG00000261002.5 antisense AC036103.1 2 OTTHUMG00000172819.1 +24195 chr15 HAVANA gene 42210452 42273663 5668.0 - 0 ENSG00000103978.15 protein_coding TMEM87A 1 OTTHUMG00000172783.4 +24196 chr15 HAVANA gene 42313687 42314386 498.0 + 0 ENSG00000260571.1 processed_pseudogene BNIP3P5 1 OTTHUMG00000172874.1 pseudo_consens,overlapping_locus +24197 chr15 HAVANA gene 42273233 42356935 10954.0 + 0 ENSG00000214013.9 protein_coding GANC 1 OTTHUMG00000130487.8 overlapping_locus +24198 chr15 HAVANA gene 42348103 42412317 4670.0 + 0 ENSG00000258461.5 protein_coding AC012651.1 2 OTTHUMG00000171261.2 overlapping_locus +24199 chr15 HAVANA gene 42359500 42412318 4995.0 + 0 ENSG00000092529.23 protein_coding CAPN3 1 OTTHUMG00000130619.8 overlapping_locus +24200 chr15 ENSEMBL gene 42427591 42427697 107.0 - 0 ENSG00000201077.1 snRNA RNU6-188P 3 +24201 chr15 HAVANA gene 42412823 42491141 12226.0 - 0 ENSG00000103994.17 protein_coding ZNF106 1 OTTHUMG00000173244.7 ncRNA_host +24202 chr15 HAVANA gene 42497394 42532840 3399.0 - 0 ENSG00000261684.2 antisense AC018362.1 2 OTTHUMG00000173437.2 overlapping_locus +24203 chr15 HAVANA gene 42491233 42545356 5900.0 + 0 ENSG00000092531.9 protein_coding SNAP23 1 OTTHUMG00000130625.6 +24204 chr15 HAVANA gene 42497395 42548786 2549.0 - 0 ENSG00000285942.1 protein_coding AC018362.3 2 OTTHUMG00000130679.6 overlapping_locus +24205 chr15 HAVANA gene 42537820 42548802 8114.0 - 0 ENSG00000180979.9 protein_coding LRRC57 2 OTTHUMG00000193354.1 overlapping_locus +24206 chr15 HAVANA gene 42567031 42569994 710.0 - 0 ENSG00000261822.1 antisense AC018362.2 2 OTTHUMG00000175436.1 +24207 chr15 HAVANA gene 42548810 42569994 4323.0 + 0 ENSG00000137814.10 protein_coding HAUS2 2 OTTHUMG00000130678.4 +24208 chr15 HAVANA gene 42571927 42572433 507.0 + 0 ENSG00000260490.2 processed_pseudogene MYL12BP1 1 OTTHUMG00000175798.2 pseudo_consens +24209 chr15 HAVANA gene 42581156 42581488 333.0 - 0 ENSG00000260282.1 processed_pseudogene EIF4EBP2P2 1 OTTHUMG00000175800.1 pseudo_consens +24210 chr15 HAVANA gene 42575659 42720981 20706.0 + 0 ENSG00000159433.11 protein_coding STARD9 2 OTTHUMG00000175799.2 +24211 chr15 HAVANA gene 42724102 42724922 821.0 + 0 ENSG00000278769.1 antisense AC090510.3 2 OTTHUMG00000186823.2 +24212 chr15 HAVANA gene 42726583 42727211 629.0 + 0 ENSG00000274403.1 antisense AC090510.2 2 OTTHUMG00000186824.1 +24213 chr15 HAVANA gene 42723544 42737128 5448.0 - 0 ENSG00000140326.13 protein_coding CDAN1 2 OTTHUMG00000175801.4 +24214 chr15 HAVANA gene 42739118 42743202 2135.0 + 0 ENSG00000246283.2 lincRNA AC090510.1 2 OTTHUMG00000175803.1 +24215 chr15 HAVANA gene 42800968 42802405 1438.0 - 0 ENSG00000260799.1 processed_pseudogene KRT8P50 2 OTTHUMG00000176056.1 overlapping_locus +24216 chr15 HAVANA gene 42738734 42920809 12917.0 - 0 ENSG00000128881.16 protein_coding TTBK2 1 OTTHUMG00000175802.4 overlapping_locus +24217 chr15 HAVANA gene 42939310 42940358 1049.0 - 0 ENSG00000254793.1 processed_pseudogene FDPSP4 1 OTTHUMG00000166826.1 pseudo_consens +24218 chr15 HAVANA gene 42942897 43106113 9928.0 - 0 ENSG00000159459.11 protein_coding UBR1 2 OTTHUMG00000130702.4 +24219 chr15 ENSEMBL gene 43109928 43110018 87.0 + 0 ENSG00000281269.1 pseudogene AC068724.2 3 +24220 chr15 HAVANA gene 43115702 43116493 792.0 - 0 ENSG00000205871.5 processed_pseudogene RPS3AP47 1 OTTHUMG00000157905.1 pseudo_consens,overlapping_locus +24221 chr15 HAVANA gene 43131008 43131686 679.0 + 0 ENSG00000260928.2 processed_pseudogene SPCS2P1 1 OTTHUMG00000176486.2 pseudo_consens,overlapping_locus +24222 chr15 HAVANA gene 43184079 43185141 532.0 - 0 ENSG00000261687.1 antisense AC068724.1 2 OTTHUMG00000176487.1 overlapping_locus +24223 chr15 HAVANA gene 43123279 43185146 4810.0 + 0 ENSG00000137842.6 protein_coding TMEM62 1 OTTHUMG00000176485.2 overlapping_locus +24224 chr15 HAVANA gene 43106225 43185779 473.0 - 0 ENSG00000285080.1 antisense AC068724.3 2 OTTHUMG00000192579.1 +24225 chr15 HAVANA gene 43185118 43197176 6654.0 + 0 ENSG00000166946.13 protein_coding CCNDBP1 2 OTTHUMG00000130703.3 overlapping_locus +24226 chr15 HAVANA gene 43179793 43206481 593.0 - 0 ENSG00000285117.1 processed_transcript AC068724.4 2 OTTHUMG00000192580.1 overlapping_locus +24227 chr15 HAVANA gene 43197227 43221125 3039.0 - 0 ENSG00000166947.13 protein_coding EPB42 2 OTTHUMG00000130701.8 overlapping_locus +24228 chr15 ENSEMBL gene 43247680 43247781 102.0 + 0 ENSG00000202211.1 misc_RNA RF00019 3 +24229 chr15 HAVANA gene 43232595 43266857 3631.0 - 0 ENSG00000104055.15 protein_coding TGM5 2 OTTHUMG00000176488.3 +24230 chr15 HAVANA gene 43267904 43268388 485.0 - 0 ENSG00000261679.2 processed_pseudogene ATP5PDP1 1 OTTHUMG00000176546.2 pseudo_consens +24231 chr15 HAVANA gene 43276280 43302255 2325.0 - 0 ENSG00000159495.7 protein_coding TGM7 2 OTTHUMG00000176547.1 +24232 chr15 HAVANA gene 43302096 43302772 465.0 + 0 ENSG00000260406.1 antisense AC009852.1 2 OTTHUMG00000176548.1 +24233 chr15 HAVANA gene 43323649 43330605 6957.0 - 0 ENSG00000168806.7 protein_coding LCMT2 1 OTTHUMG00000130705.3 +24234 chr15 HAVANA gene 43330657 43354555 5735.0 + 0 ENSG00000168803.15 protein_coding ADAL 2 OTTHUMG00000176646.2 +24235 chr15 HAVANA gene 43358172 43371025 6634.0 - 0 ENSG00000140265.12 protein_coding ZSCAN29 2 OTTHUMG00000130767.3 +24236 chr15 ENSEMBL gene 43391384 43391727 344.0 - 0 ENSG00000243871.3 misc_RNA RN7SL487P 3 +24237 chr15 HAVANA gene 43369221 43409771 11171.0 + 0 ENSG00000137822.12 protein_coding TUBGCP4 1 OTTHUMG00000176647.3 +24238 chr15 HAVANA gene 43403061 43510728 12991.0 - 0 ENSG00000067369.13 protein_coding TP53BP1 1 OTTHUMG00000059757.15 +24239 chr15 HAVANA gene 43510958 43531620 10629.0 + 0 ENSG00000166963.12 protein_coding MAP1A 1 OTTHUMG00000059756.5 +24240 chr15 HAVANA gene 43533462 43590253 8075.0 - 0 ENSG00000168781.22 protein_coding PPIP5K1 1 OTTHUMG00000059758.19 +24241 chr15 ENSEMBL gene 43602543 43602648 106.0 + 0 ENSG00000222398.1 snRNA RNU6-554P 3 +24242 chr15 HAVANA gene 43593054 43604901 3470.0 + 0 ENSG00000237289.9 protein_coding CKMT1B 2 OTTHUMG00000059900.7 ncRNA_host +24243 chr15 HAVANA gene 43599563 43618800 8102.0 - 0 ENSG00000242866.10 protein_coding STRC 2 OTTHUMG00000059899.6 +24244 chr15 HAVANA gene 43614208 43632283 1684.0 - 0 ENSG00000284772.1 protein_coding AC011330.3 2 OTTHUMG00000192609.1 overlapping_locus +24245 chr15 ENSEMBL gene 43637632 43637738 107.0 - 0 ENSG00000206991.1 snRNA RNU6-610P 3 +24246 chr15 HAVANA gene 43642389 43643023 635.0 - 0 ENSG00000275601.1 sense_intronic AC011330.2 2 OTTHUMG00000150036.1 overlapping_locus +24247 chr15 HAVANA gene 43649123 43649280 158.0 + 0 ENSG00000224677.1 unprocessed_pseudogene PDIA3P2 2 OTTHUMG00000059904.1 +24248 chr15 HAVANA gene 43628503 43668118 8403.0 - 0 ENSG00000166762.17 protein_coding CATSPER2 2 OTTHUMG00000059902.12 ncRNA_host,overlapping_locus +24249 chr15 HAVANA gene 43663654 43684339 3235.0 - 0 ENSG00000249839.1 unprocessed_pseudogene AC011330.1 2 OTTHUMG00000059903.2 overlapping_locus +24250 chr15 HAVANA gene 43692886 43699222 3109.0 + 0 ENSG00000223572.9 protein_coding CKMT1A 2 OTTHUMG00000059898.16 +24251 chr15 ENSEMBL gene 43702363 43702470 108.0 + 0 ENSG00000201136.1 snRNA RNU6-353P 3 +24252 chr15 HAVANA gene 43699488 43718184 5328.0 - 0 ENSG00000166763.7 unprocessed_pseudogene STRCP1 2 OTTHUMG00000059934.1 +24253 chr15 ENSEMBL gene 43734179 43734285 107.0 - 0 ENSG00000206589.1 snRNA RNU6-354P 3 +24254 chr15 HAVANA gene 43726918 43747094 3925.0 - 0 ENSG00000205771.6 transcribed_unprocessed_pseudogene CATSPER2P1 2 OTTHUMG00000059938.2 +24255 chr15 HAVANA gene 43746392 43773279 4240.0 + 0 ENSG00000167004.12 protein_coding PDIA3 2 OTTHUMG00000044444.8 +24256 chr15 HAVANA gene 43772600 43777543 2880.0 - 0 ENSG00000128886.11 protein_coding ELL3 2 OTTHUMG00000059936.5 overlapping_locus +24257 chr15 ENSEMBL gene 43793659 43793759 101.0 - 0 ENSG00000221792.1 miRNA MIR1282 3 +24258 chr15 HAVANA gene 43772617 43799133 2326.0 - 0 ENSG00000262560.1 protein_coding AC018512.1 2 OTTHUMG00000177927.1 ncRNA_host,overlapping_locus +24259 chr15 HAVANA gene 43794162 43800221 2977.0 - 0 ENSG00000184716.13 protein_coding SERINC4 1 OTTHUMG00000060144.5 overlapping_locus +24260 chr15 HAVANA gene 43777087 43802589 7347.0 + 0 ENSG00000140264.19 protein_coding SERF2 1 OTTHUMG00000059935.13 overlapping_locus +24261 chr15 HAVANA gene 43796142 43803043 6393.0 + 0 ENSG00000242028.6 protein_coding HYPK 2 OTTHUMG00000060146.7 overlapping_locus +24262 chr15 HAVANA gene 43804492 43824802 2373.0 - 0 ENSG00000140259.6 protein_coding MFAP1 2 OTTHUMG00000060145.3 +24263 chr15 ENSEMBL gene 43863893 43864005 113.0 - 0 ENSG00000200391.1 misc_RNA RF00019 3 +24264 chr15 HAVANA gene 43826963 43868419 4078.0 + 0 ENSG00000092470.11 protein_coding WDR76 1 OTTHUMG00000060143.11 +24265 chr15 HAVANA gene 43875849 43876244 396.0 - 0 ENSG00000227973.1 processed_pseudogene PIN4P1 1 OTTHUMG00000060476.1 pseudo_consens,overlapping_locus +24266 chr15 HAVANA gene 43989061 43990184 1124.0 - 0 ENSG00000185607.5 processed_pseudogene ACTBP7 1 OTTHUMG00000060473.1 pseudo_consens,overlapping_locus +24267 chr15 HAVANA gene 44063511 44064313 803.0 + 0 ENSG00000224055.1 processed_pseudogene GAPDHP55 1 OTTHUMG00000060474.1 pseudo_consens +24268 chr15 HAVANA gene 43870761 44195252 6673.0 - 0 ENSG00000171877.20 protein_coding FRMD5 1 OTTHUMG00000060475.7 overlapping_locus +24269 chr15 HAVANA gene 44354691 44355692 1002.0 + 0 ENSG00000250130.1 processed_pseudogene AC090519.1 1 OTTHUMG00000160038.1 pseudo_consens,overlapping_locus +24270 chr15 HAVANA gene 44387320 44390451 655.0 - 0 ENSG00000259499.1 lincRNA AC090519.2 2 OTTHUMG00000171845.1 +24271 chr15 HAVANA gene 44288729 44415758 6948.0 + 0 ENSG00000166734.19 protein_coding CASC4 1 OTTHUMG00000131133.5 overlapping_locus +24272 chr15 HAVANA gene 44402685 44427144 625.0 - 0 ENSG00000259595.1 antisense AC025043.1 2 OTTHUMG00000171846.1 +24273 chr15 HAVANA gene 44447577 44449344 1768.0 - 0 ENSG00000259335.1 processed_pseudogene HNRNPMP1 1 OTTHUMG00000171870.1 pseudo_consens +24274 chr15 HAVANA gene 44516650 44517483 498.0 - 0 ENSG00000259563.1 antisense AC025430.1 2 OTTHUMG00000171871.1 +24275 chr15 HAVANA gene 44427234 44529038 9665.0 + 0 ENSG00000137770.13 protein_coding CTDSPL2 2 OTTHUMG00000131159.3 +24276 chr15 HAVANA gene 44527257 44536923 3330.0 - 0 ENSG00000179523.4 lincRNA EIF3J-DT 2 OTTHUMG00000171875.1 +24277 chr15 HAVANA gene 44557829 44559188 653.0 + 0 ENSG00000259659.1 sense_intronic AC009996.1 2 OTTHUMG00000171876.1 overlapping_locus +24278 chr15 HAVANA gene 44537057 44563029 3195.0 + 0 ENSG00000104131.12 protein_coding EIF3J 1 OTTHUMG00000131158.3 overlapping_locus +24279 chr15 HAVANA gene 44562696 44663678 11853.0 - 0 ENSG00000104133.14 protein_coding SPG11 1 OTTHUMG00000131199.4 +24280 chr15 ENSEMBL gene 44697333 44697430 98.0 - 0 ENSG00000206957.2 misc_RNA RF00019 3 +24281 chr15 HAVANA gene 44665732 44711316 4771.0 - 0 ENSG00000229474.6 protein_coding PATL2 1 OTTHUMG00000171932.2 ncRNA_host +24282 chr15 HAVANA gene 44711487 44718877 6079.0 + 0 ENSG00000166710.18 protein_coding B2M 2 OTTHUMG00000131247.4 +24283 chr15 HAVANA gene 44728988 44767829 9265.0 + 0 ENSG00000185880.12 protein_coding TRIM69 1 OTTHUMG00000131246.5 +24284 chr15 HAVANA gene 44778196 44778721 526.0 - 0 ENSG00000276121.1 lincRNA AC122108.2 2 OTTHUMG00000186845.1 +24285 chr15 HAVANA gene 44826540 44827094 424.0 + 0 ENSG00000259187.1 lincRNA AC122108.1 2 OTTHUMG00000171967.1 +24286 chr15 ENSEMBL gene 44843612 44843724 113.0 + 0 ENSG00000238845.1 misc_RNA RF00019 3 +24287 chr15 HAVANA gene 44825747 44884694 2925.0 - 0 ENSG00000259479.6 transcribed_unprocessed_pseudogene SORD2P 2 OTTHUMG00000171966.3 +24288 chr15 ENSEMBL gene 44884616 44884780 165.0 + 0 ENSG00000212424.1 snRNA RNU1-119P 3 +24289 chr15 HAVANA gene 44919376 44920820 1141.0 + 0 ENSG00000259231.2 processed_pseudogene AC090888.1 1 OTTHUMG00000171969.2 pseudo_consens +24290 chr15 ENSEMBL gene 44927600 44927703 104.0 - 0 ENSG00000252117.1 snRNA RNU6-1108P 3 +24291 chr15 HAVANA gene 44914802 44930622 509.0 - 0 ENSG00000259742.1 unprocessed_pseudogene AC090888.3 2 OTTHUMG00000171968.1 +24292 chr15 ENSEMBL gene 44962830 44962933 104.0 + 0 ENSG00000252475.1 snRNA RNU6-1332P 3 +24293 chr15 HAVANA gene 44970035 44971178 1144.0 - 0 ENSG00000259304.1 processed_pseudogene AC090888.2 1 OTTHUMG00000171970.1 pseudo_consens +24294 chr15 ENSEMBL gene 44973558 44973661 104.0 + 0 ENSG00000252288.1 snRNA RNU6-966P 3 +24295 chr15 HAVANA gene 44956702 44979229 1487.0 + 0 ENSG00000167014.10 protein_coding TERB2 2 OTTHUMG00000131264.2 ncRNA_host +24296 chr15 ENSEMBL gene 45002864 45003028 165.0 - 0 ENSG00000212550.1 snRNA RNU1-78P 3 +24297 chr15 ENSEMBL gene 45047103 45047215 113.0 - 0 ENSG00000252171.1 misc_RNA RF00019 3 +24298 chr15 HAVANA gene 45041716 45058707 542.0 - 0 ENSG00000259418.1 antisense AC091117.2 2 OTTHUMG00000171971.1 ncRNA_host +24299 chr15 HAVANA gene 45073492 45074048 426.0 - 0 ENSG00000259352.1 antisense AC091117.1 2 OTTHUMG00000171972.1 +24300 chr15 HAVANA gene 45023104 45077185 6159.0 + 0 ENSG00000140263.13 protein_coding SORD 2 OTTHUMG00000131265.3 +24301 chr15 HAVANA gene 45092650 45114344 9834.0 - 0 ENSG00000140279.12 protein_coding DUOX2 2 OTTHUMG00000131355.3 +24302 chr15 HAVANA gene 45114321 45118421 2554.0 + 0 ENSG00000140274.13 protein_coding DUOXA2 2 OTTHUMG00000131354.3 +24303 chr15 HAVANA gene 45117367 45129938 3721.0 - 0 ENSG00000140254.12 protein_coding DUOXA1 2 OTTHUMG00000131352.4 +24304 chr15 HAVANA gene 45129933 45165576 8784.0 + 0 ENSG00000137857.17 protein_coding DUOX1 2 OTTHUMG00000171987.4 +24305 chr15 HAVANA gene 45152664 45167526 595.0 - 0 ENSG00000259539.1 3prime_overlapping_ncRNA AC051619.6 2 OTTHUMG00000171988.1 overlapping_locus +24306 chr15 HAVANA gene 45198517 45199139 623.0 - 0 ENSG00000259932.1 sense_intronic AC051619.7 2 OTTHUMG00000172833.1 overlapping_locus +24307 chr15 HAVANA gene 45170344 45199958 292.0 + 0 ENSG00000259519.1 antisense AC051619.4 2 OTTHUMG00000172000.1 +24308 chr15 HAVANA gene 45200325 45200632 308.0 - 0 ENSG00000260035.1 sense_intronic AC051619.8 2 OTTHUMG00000172834.1 overlapping_locus +24309 chr15 HAVANA gene 45167214 45201175 4894.0 - 0 ENSG00000138606.19 protein_coding SHF 1 OTTHUMG00000131353.5 overlapping_locus +24310 chr15 ENSEMBL gene 45214906 45215033 128.0 - 0 ENSG00000261709.3 snoRNA RF00614 3 +24311 chr15 HAVANA gene 45214448 45215044 597.0 - 0 ENSG00000279014.1 TEC AC051619.9 2 OTTHUMG00000172835.1 ncRNA_host +24312 chr15 HAVANA gene 45215547 45215943 397.0 + 0 ENSG00000259338.1 processed_pseudogene AC051619.2 1 OTTHUMG00000172001.1 pseudo_consens +24313 chr15 HAVANA gene 45252230 45277845 5192.0 + 0 ENSG00000137860.11 protein_coding SLC28A2 2 OTTHUMG00000131426.4 +24314 chr15 HAVANA gene 45251580 45279251 1455.0 - 0 ENSG00000259520.5 antisense AC051619.5 2 OTTHUMG00000172002.2 +24315 chr15 HAVANA gene 45279423 45280474 969.0 + 0 ENSG00000285597.1 lincRNA AC051619.10 2 OTTHUMG00000193307.1 +24316 chr15 HAVANA gene 45321077 45321692 616.0 - 0 ENSG00000235390.4 processed_pseudogene AC051619.1 2 OTTHUMG00000172003.2 +24317 chr15 HAVANA gene 45330209 45332634 2426.0 - 0 ENSG00000259433.2 processed_pseudogene AC051619.3 1 OTTHUMG00000172004.2 pseudo_consens +24318 chr15 ENSEMBL gene 45354779 45354885 107.0 - 0 ENSG00000238941.1 snRNA RNU6-953P 3 +24319 chr15 HAVANA gene 45378700 45380123 1424.0 + 0 ENSG00000275672.1 antisense AC025580.3 2 OTTHUMG00000186847.1 +24320 chr15 HAVANA gene 45361124 45402327 6644.0 - 0 ENSG00000171766.15 protein_coding GATM 2 OTTHUMG00000131427.5 +24321 chr15 HAVANA gene 45402331 45421419 3406.0 + 0 ENSG00000171763.18 protein_coding SPATA5L1 1 OTTHUMG00000131425.4 +24322 chr15 ENSEMBL gene 45433050 45433129 80.0 + 0 ENSG00000284386.1 miRNA MIR147B 3 +24323 chr15 HAVANA gene 45430652 45441808 729.0 - 0 ENSG00000259342.1 antisense AC025580.1 2 OTTHUMG00000172024.1 +24324 chr15 HAVANA gene 45430529 45448761 1405.0 + 0 ENSG00000166920.12 protein_coding C15orf48 2 OTTHUMG00000131424.3 ncRNA_host,overlapping_locus +24325 chr15 HAVANA gene 45448427 45513767 3886.0 + 0 ENSG00000259354.5 antisense AC025580.2 2 OTTHUMG00000172025.1 overlapping_locus +24326 chr15 HAVANA gene 45479611 45522807 8073.0 - 0 ENSG00000104154.6 protein_coding SLC30A4 1 OTTHUMG00000131439.3 +24327 chr15 ENSEMBL gene 45537250 45537377 128.0 + 0 ENSG00000207516.1 snoRNA SNORA41B 3 +24328 chr15 HAVANA gene 45558598 45562877 431.0 + 0 ENSG00000259681.1 lincRNA AC090527.1 2 OTTHUMG00000172027.1 overlapping_locus +24329 chr15 HAVANA gene 45566776 45567074 299.0 + 0 ENSG00000259427.2 transcribed_processed_pseudogene DPPA5P2 1 OTTHUMG00000172028.2 pseudo_consens,overlapping_locus +24330 chr15 HAVANA gene 45511136 45586290 3091.0 + 0 ENSG00000179362.14 transcribed_processed_pseudogene HMGN2P46 2 OTTHUMG00000153087.4 overlapping_locus +24331 chr15 HAVANA gene 45585757 45586304 548.0 - 0 ENSG00000275709.1 lincRNA AC090527.3 2 OTTHUMG00000186848.1 +24332 chr15 ENSEMBL gene 45591984 45592085 102.0 + 0 ENSG00000200419.1 misc_RNA RF00019 3 +24333 chr15 HAVANA gene 45587123 45615999 6812.0 + 0 ENSG00000104164.10 protein_coding BLOC1S6 1 OTTHUMG00000131477.4 ncRNA_host,overlapping_locus +24334 chr15 HAVANA gene 45587351 45676314 1060.0 + 0 ENSG00000260170.1 protein_coding AC090527.2 2 OTTHUMG00000172725.3 ncRNA_host,overlapping_locus +24335 chr15 HAVANA gene 45631148 45691294 3088.0 + 0 ENSG00000137767.13 protein_coding SQOR 2 OTTHUMG00000131476.4 overlapping_locus +24336 chr15 HAVANA gene 45702640 45703183 544.0 + 0 ENSG00000273972.1 lincRNA AC068722.2 2 OTTHUMG00000186849.1 +24337 chr15 HAVANA gene 45705078 45931069 1270.0 + 0 ENSG00000259200.1 lincRNA AC068722.1 2 OTTHUMG00000172029.1 +24338 chr15 HAVANA gene 46099193 46100392 800.0 - 0 ENSG00000259743.2 processed_pseudogene AC068714.1 1 OTTHUMG00000172030.2 pseudo_consens +24339 chr15 HAVANA gene 46341354 46341599 246.0 + 0 ENSG00000259593.1 processed_pseudogene MTND5P40 2 OTTHUMG00000172031.1 +24340 chr15 ENSEMBL gene 46351662 46351746 85.0 - 0 ENSG00000238819.1 snoRNA RF01182 3 +24341 chr15 HAVANA gene 46365836 46381043 1925.0 + 0 ENSG00000285934.1 lincRNA AC091074.1 2 OTTHUMG00000192999.1 +24342 chr15 ENSEMBL gene 46660658 46660760 103.0 + 0 ENSG00000238456.1 snRNA RNU6-1014P 3 +24343 chr15 ENSEMBL gene 46720193 46720512 320.0 - 0 ENSG00000223308.1 misc_RNA RN7SKP101 3 +24344 chr15 HAVANA gene 46693288 46804844 539.0 + 0 ENSG00000259255.1 lincRNA AC073941.1 2 OTTHUMG00000172048.1 +24345 chr15 HAVANA gene 46827526 46827958 433.0 + 0 ENSG00000259509.2 processed_pseudogene AC073941.2 1 OTTHUMG00000172049.2 pseudo_consens +24346 chr15 HAVANA gene 47133495 47134122 628.0 - 0 ENSG00000284540.1 TEC AC066615.1 2 OTTHUMG00000192055.1 +24347 chr15 ENSEMBL gene 47272597 47272889 293.0 + 0 ENSG00000222343.1 misc_RNA RN7SKP139 3 +24348 chr15 HAVANA gene 47274183 47275164 555.0 + 0 ENSG00000259554.1 sense_intronic AC084882.1 2 OTTHUMG00000172111.1 overlapping_locus +24349 chr15 HAVANA gene 47359430 47396732 1481.0 - 0 ENSG00000259221.5 antisense AC023905.1 2 OTTHUMG00000172055.1 +24350 chr15 HAVANA gene 47397501 47399554 581.0 - 0 ENSG00000259360.1 antisense AC009558.1 2 OTTHUMG00000172056.1 +24351 chr15 HAVANA gene 47525169 47527756 396.0 + 0 ENSG00000259740.1 sense_intronic AC009558.2 2 OTTHUMG00000172112.1 overlapping_locus +24352 chr15 HAVANA gene 47603880 47606352 472.0 - 0 ENSG00000259588.1 antisense AC012050.1 2 OTTHUMG00000172057.1 +24353 chr15 HAVANA gene 47730144 47730935 792.0 - 0 ENSG00000213862.4 processed_pseudogene AC044787.1 1 OTTHUMG00000157911.1 pseudo_consens +24354 chr15 HAVANA gene 47184101 47774223 8557.0 + 0 ENSG00000137872.16 protein_coding SEMA6D 2 OTTHUMG00000172110.3 ncRNA_host,overlapping_locus +24355 chr15 HAVANA gene 47803384 47846236 966.0 - 0 ENSG00000259572.5 lincRNA LINC01491 2 OTTHUMG00000172113.1 +24356 chr15 HAVANA gene 47944044 47949509 325.0 + 0 ENSG00000259730.1 lincRNA AC092078.1 2 OTTHUMG00000172115.1 overlapping_locus +24357 chr15 HAVANA gene 47884310 48049112 581.0 + 0 ENSG00000259754.1 lincRNA AC092078.2 2 OTTHUMG00000172114.1 overlapping_locus +24358 chr15 HAVANA gene 48120972 48142672 4778.0 + 0 ENSG00000188467.10 protein_coding SLC24A5 2 OTTHUMG00000131494.4 +24359 chr15 HAVANA gene 48134631 48178517 14067.0 - 0 ENSG00000104177.17 protein_coding MYEF2 2 OTTHUMG00000172120.5 +24360 chr15 HAVANA gene 48189037 48191691 831.0 - 0 ENSG00000259235.1 lincRNA AC066612.1 2 OTTHUMG00000172151.1 +24361 chr15 HAVANA gene 48192191 48201684 695.0 - 0 ENSG00000259385.1 antisense AC066612.2 2 OTTHUMG00000172153.1 +24362 chr15 HAVANA gene 48178122 48203756 3768.0 + 0 ENSG00000233932.5 protein_coding CTXN2 2 OTTHUMG00000172152.3 overlapping_locus +24363 chr15 HAVANA gene 48178438 48304078 12839.0 + 0 ENSG00000074803.18 protein_coding SLC12A1 1 OTTHUMG00000131495.9 overlapping_locus +24364 chr15 ENSEMBL gene 48325558 48325671 114.0 - 0 ENSG00000202542.1 misc_RNA RF00019 3 +24365 chr15 HAVANA gene 48312353 48331856 4710.0 - 0 ENSG00000259488.2 antisense AC023355.1 2 OTTHUMG00000172154.5 ncRNA_host +24366 chr15 HAVANA gene 48331011 48343373 3674.0 + 0 ENSG00000128951.13 protein_coding DUT 1 OTTHUMG00000172155.3 +24367 chr15 HAVANA gene 48528980 48529728 749.0 - 0 ENSG00000274654.1 sense_intronic AC022467.1 2 OTTHUMG00000186855.1 overlapping_locus +24368 chr15 HAVANA gene 48408306 48645849 16057.0 - 0 ENSG00000166147.13 protein_coding FBN1 1 OTTHUMG00000172218.2 overlapping_locus +24369 chr15 HAVANA gene 48645951 48652016 1943.0 + 0 ENSG00000259705.1 lincRNA AC084757.3 2 OTTHUMG00000172157.1 +24370 chr15 HAVANA gene 48662531 48663056 526.0 - 0 ENSG00000273925.1 lincRNA AC084757.4 2 OTTHUMG00000186856.2 +24371 chr15 HAVANA gene 48725338 48725827 490.0 + 0 ENSG00000259216.2 processed_pseudogene AC084757.1 1 OTTHUMG00000172158.2 pseudo_consens +24372 chr15 HAVANA gene 48729080 48729844 540.0 - 0 ENSG00000259469.1 lincRNA AC084757.2 2 OTTHUMG00000172220.1 overlapping_locus +24373 chr15 HAVANA gene 48783190 48784121 406.0 + 0 ENSG00000259670.1 antisense AC012379.1 2 OTTHUMG00000172159.1 +24374 chr15 HAVANA gene 48712928 48811146 8168.0 - 0 ENSG00000103995.13 protein_coding CEP152 1 OTTHUMG00000172219.2 overlapping_locus +24375 chr15 HAVANA gene 48810701 48811909 1209.0 + 0 ENSG00000259700.3 processed_transcript AC012379.2 2 OTTHUMG00000172160.1 +24376 chr15 HAVANA gene 48877886 48880183 2298.0 + 0 ENSG00000255302.4 protein_coding EID1 1 OTTHUMG00000165911.2 retrogene +24377 chr15 HAVANA gene 48938236 48948031 666.0 + 0 ENSG00000259602.1 antisense AC091073.1 2 OTTHUMG00000172161.1 +24378 chr15 HAVANA gene 48823735 48963444 6063.0 - 0 ENSG00000185634.11 protein_coding SHC4 2 OTTHUMG00000131513.2 +24379 chr15 HAVANA gene 48971803 48973361 1559.0 + 0 ENSG00000259500.1 processed_pseudogene KRT8P24 1 OTTHUMG00000172162.1 pseudo_consens +24380 chr15 ENSEMBL gene 48995912 48996022 111.0 - 0 ENSG00000207105.1 misc_RNA RF00019 3 +24381 chr15 ENSEMBL gene 49042341 49042643 303.0 - 0 ENSG00000265942.2 misc_RNA RN7SL577P 3 +24382 chr15 HAVANA gene 48988476 49046563 8699.0 - 0 ENSG00000138593.8 protein_coding SECISBP2L 1 OTTHUMG00000172194.2 ncRNA_host +24383 chr15 HAVANA gene 49101791 49103264 743.0 + 0 ENSG00000259656.1 lincRNA AC013452.2 2 OTTHUMG00000172323.1 +24384 chr15 ENSEMBL gene 49137762 49137863 102.0 - 0 ENSG00000200120.1 misc_RNA RF00019 3 +24385 chr15 HAVANA gene 49106068 49155661 7510.0 - 0 ENSG00000166200.14 protein_coding COPS2 2 OTTHUMG00000172324.3 ncRNA_host +24386 chr15 HAVANA gene 49156329 49156847 519.0 + 0 ENSG00000259467.1 processed_pseudogene NDUFAF4P1 1 OTTHUMG00000172326.1 pseudo_consens,overlapping_locus +24387 chr15 ENSEMBL gene 49169070 49169153 84.0 - 0 ENSG00000264210.1 miRNA MIR4716 3 +24388 chr15 HAVANA gene 49177610 49178741 598.0 - 0 ENSG00000259545.2 processed_pseudogene AC013452.1 1 OTTHUMG00000172327.2 pseudo_consens +24389 chr15 ENSEMBL gene 49198900 49199194 295.0 - 0 ENSG00000243338.3 misc_RNA RN7SL307P 3 +24390 chr15 HAVANA gene 49343608 49344254 647.0 + 0 ENSG00000275580.1 lincRNA AC022306.2 2 OTTHUMG00000186857.1 overlapping_locus +24391 chr15 HAVANA gene 49353485 49354034 550.0 + 0 ENSG00000276593.1 sense_intronic AC022306.3 2 OTTHUMG00000186858.1 overlapping_locus +24392 chr15 HAVANA gene 49365124 49366685 1562.0 - 0 ENSG00000259531.2 processed_pseudogene AC022306.1 1 OTTHUMG00000172329.2 pseudo_consens,overlapping_locus +24393 chr15 HAVANA gene 49155656 49367869 7531.0 + 0 ENSG00000156958.14 protein_coding GALK2 1 OTTHUMG00000172325.3 overlapping_locus +24394 chr15 HAVANA gene 49423096 49488775 6657.0 + 0 ENSG00000140285.9 protein_coding FGF7 1 OTTHUMG00000131517.4 +24395 chr15 HAVANA gene 49326962 49620931 6020.0 - 0 ENSG00000166262.15 protein_coding FAM227B 1 OTTHUMG00000172328.2 overlapping_locus +24396 chr15 HAVANA gene 49620980 49656232 15053.0 + 0 ENSG00000104047.14 protein_coding DTWD1 2 OTTHUMG00000131567.4 +24397 chr15 HAVANA gene 49794246 49796097 1852.0 + 0 ENSG00000259388.1 processed_pseudogene AC025040.2 1 OTTHUMG00000172366.1 pseudo_consens +24398 chr15 HAVANA gene 49879604 49883525 1341.0 + 0 ENSG00000259188.5 antisense AC025040.1 2 OTTHUMG00000172369.1 +24399 chr15 ENSEMBL gene 49982443 49982561 119.0 + 0 ENSG00000201086.1 rRNA_pseudogene RNA5SP394 3 +24400 chr15 HAVANA gene 49858238 50182817 10861.0 - 0 ENSG00000104043.14 protein_coding ATP8B4 2 OTTHUMG00000172368.4 +24401 chr15 ENSEMBL gene 50221888 50221996 109.0 + 0 ENSG00000200605.1 misc_RNA RF00019 3 +24402 chr15 HAVANA gene 50182196 50236395 2802.0 + 0 ENSG00000140284.10 protein_coding SLC27A2 1 OTTHUMG00000131643.2 ncRNA_host +24403 chr15 ENSEMBL gene 50244628 50244931 304.0 - 0 ENSG00000241175.3 misc_RNA RN7SL494P 3 +24404 chr15 HAVANA gene 50241947 50266026 3956.0 - 0 ENSG00000140287.10 protein_coding HDC 2 OTTHUMG00000131644.3 ncRNA_host +24405 chr15 ENSEMBL gene 50347423 50347529 107.0 - 0 ENSG00000271819.1 snRNA RNU6-94P 3 +24406 chr15 HAVANA gene 50348936 50354861 5926.0 - 0 ENSG00000285410.1 sense_intronic GABPB1-IT1 2 OTTHUMG00000192411.1 +24407 chr15 HAVANA gene 50275392 50355408 11726.0 - 0 ENSG00000104064.17 protein_coding GABPB1 1 OTTHUMG00000131642.4 ncRNA_host +24408 chr15 HAVANA gene 50359450 50360194 612.0 - 0 ENSG00000259715.1 lincRNA AC022087.1 2 OTTHUMG00000172397.1 +24409 chr15 ENSEMBL gene 50360329 50360410 82.0 + 0 ENSG00000284284.1 miRNA MIR4712 3 +24410 chr15 HAVANA gene 50354959 50372202 17179.0 + 0 ENSG00000244879.7 antisense GABPB1-AS1 2 OTTHUMG00000172396.3 ncRNA_host +24411 chr15 HAVANA gene 50417385 50418692 1308.0 + 0 ENSG00000259465.2 processed_pseudogene AHCYP7 1 OTTHUMG00000172446.2 pseudo_consens +24412 chr15 ENSEMBL gene 50463381 50463498 118.0 + 0 ENSG00000252376.1 rRNA_pseudogene RNA5SP395 3 +24413 chr15 HAVANA gene 50466738 50467096 359.0 + 0 ENSG00000242737.1 processed_pseudogene AC012170.1 1 OTTHUMG00000157916.1 pseudo_consens,overlapping_locus +24414 chr15 HAVANA gene 50494018 50497080 297.0 - 0 ENSG00000259618.1 lincRNA AC012170.3 2 OTTHUMG00000172447.1 +24415 chr15 HAVANA gene 50497195 50498744 667.0 - 0 ENSG00000259298.1 antisense AC012170.2 2 OTTHUMG00000172448.1 +24416 chr15 HAVANA gene 50424380 50514419 20639.0 + 0 ENSG00000138592.13 protein_coding USP8 1 OTTHUMG00000131645.8 overlapping_locus +24417 chr15 HAVANA gene 50500562 50546708 1907.0 - 0 ENSG00000170236.14 protein_coding USP50 2 OTTHUMG00000167591.3 +24418 chr15 HAVANA gene 50557601 50560500 606.0 + 0 ENSG00000259684.1 antisense AC084756.1 2 OTTHUMG00000172450.1 +24419 chr15 HAVANA gene 50552473 50686815 12333.0 - 0 ENSG00000092439.14 protein_coding TRPM7 1 OTTHUMG00000172449.3 +24420 chr15 ENSEMBL gene 50688900 50689193 294.0 + 0 ENSG00000243027.3 misc_RNA RN7SL354P 3 +24421 chr15 HAVANA gene 50742702 50743276 575.0 - 0 ENSG00000279665.1 TEC AC012100.3 2 OTTHUMG00000176908.1 overlapping_locus +24422 chr15 HAVANA gene 50746709 50749829 304.0 + 0 ENSG00000259773.1 antisense AC012100.2 2 OTTHUMG00000172451.1 +24423 chr15 HAVANA gene 50702266 50765808 8144.0 - 0 ENSG00000138600.9 protein_coding SPPL2A 2 OTTHUMG00000131647.5 overlapping_locus +24424 chr15 HAVANA gene 50798670 50798951 282.0 + 0 ENSG00000241130.1 processed_pseudogene AC012100.1 2 OTTHUMG00000157918.1 +24425 chr15 HAVANA gene 50839875 50908599 2669.0 - 0 ENSG00000273674.4 lincRNA AC021752.1 2 OTTHUMG00000186859.1 +24426 chr15 HAVANA gene 50944663 50945996 1334.0 + 0 ENSG00000259378.1 processed_pseudogene DCAF13P3 1 OTTHUMG00000172459.1 pseudo_consens,overlapping_locus +24427 chr15 HAVANA gene 50908672 51005900 7359.0 + 0 ENSG00000081014.10 protein_coding AP4E1 1 OTTHUMG00000172458.1 overlapping_locus +24428 chr15 HAVANA gene 51064609 51069586 308.0 - 0 ENSG00000259204.1 sense_intronic AC073964.1 2 OTTHUMG00000172461.1 overlapping_locus +24429 chr15 HAVANA gene 51056598 51105276 2280.0 - 0 ENSG00000183578.7 protein_coding TNFAIP8L3 2 OTTHUMG00000172460.3 overlapping_locus +24430 chr15 ENSEMBL gene 51242190 51242264 75.0 + 0 ENSG00000266593.1 miRNA MIR4713 3 +24431 chr15 HAVANA gene 51278927 51280015 363.0 - 0 ENSG00000259701.1 sense_intronic AC020891.3 2 OTTHUMG00000172484.1 overlapping_locus +24432 chr15 HAVANA gene 51037488 51293912 561.0 + 0 ENSG00000259240.1 lincRNA MIR4713HG 2 OTTHUMG00000172467.1 ncRNA_host +24433 chr15 ENSEMBL gene 51314032 51314107 76.0 - 0 ENSG00000283614.1 miRNA MIR7973-2 3 +24434 chr15 ENSEMBL gene 51314034 51314109 76.0 + 0 ENSG00000278098.1 miRNA MIR7973-1 3 +24435 chr15 HAVANA gene 51315841 51321996 776.0 + 0 ENSG00000259306.2 lincRNA AC020891.2 2 OTTHUMG00000172468.1 +24436 chr15 HAVANA gene 51208057 51338610 8437.0 - 0 ENSG00000137869.14 protein_coding CYP19A1 1 OTTHUMG00000131747.6 ncRNA_host,overlapping_locus +24437 chr15 HAVANA gene 51351100 51351192 93.0 - 0 ENSG00000270378.1 processed_pseudogene AC020891.4 1 OTTHUMG00000184833.1 pseudo_consens +24438 chr15 HAVANA gene 51367377 51369110 174.0 + 0 ENSG00000259194.1 sense_intronic AC020891.1 2 OTTHUMG00000172523.1 overlapping_locus +24439 chr15 HAVANA gene 51341629 51408013 7144.0 + 0 ENSG00000186417.13 protein_coding GLDN 2 OTTHUMG00000131746.6 overlapping_locus +24440 chr15 HAVANA gene 51457286 51460582 1263.0 + 0 ENSG00000259668.5 antisense AC066613.1 2 OTTHUMG00000172525.1 overlapping_locus +24441 chr15 HAVANA gene 51414097 51498833 560.0 + 0 ENSG00000259678.1 antisense AC066613.2 2 OTTHUMG00000172524.1 overlapping_locus +24442 chr15 HAVANA gene 51447711 51622833 13807.0 - 0 ENSG00000104093.13 protein_coding DMXL2 1 OTTHUMG00000131749.2 +24443 chr15 HAVANA gene 51693216 51695765 855.0 - 0 ENSG00000259241.1 lincRNA AC020892.1 2 OTTHUMG00000172526.1 +24444 chr15 HAVANA gene 51707995 51715220 387.0 - 0 ENSG00000259296.1 antisense AC020892.2 2 OTTHUMG00000172527.1 +24445 chr15 HAVANA gene 51681353 51721031 3315.0 + 0 ENSG00000104112.8 protein_coding SCG3 2 OTTHUMG00000131748.4 +24446 chr15 HAVANA gene 51723011 51751585 2074.0 - 0 ENSG00000140280.13 protein_coding LYSMD2 1 OTTHUMG00000131804.2 +24447 chr15 HAVANA gene 51752485 51756475 581.0 + 0 ENSG00000259377.1 sense_intronic AC026770.1 2 OTTHUMG00000172571.1 overlapping_locus +24448 chr15 HAVANA gene 51751561 51816368 11636.0 + 0 ENSG00000128872.9 protein_coding TMOD2 2 OTTHUMG00000131805.2 overlapping_locus +24449 chr15 HAVANA gene 51833134 51833426 293.0 + 0 ENSG00000274954.1 sense_intronic AC090971.5 2 OTTHUMG00000186860.1 overlapping_locus +24450 chr15 ENSEMBL gene 51858070 51858352 283.0 - 0 ENSG00000277677.1 misc_RNA RF00017 3 +24451 chr15 HAVANA gene 51859185 51861293 1800.0 - 0 ENSG00000259632.2 processed_pseudogene AC090971.4 1 OTTHUMG00000172528.2 pseudo_consens +24452 chr15 ENSEMBL gene 51884556 51884653 98.0 + 0 ENSG00000207484.1 misc_RNA RF00019 3 +24453 chr15 HAVANA gene 51887560 51901123 510.0 - 0 ENSG00000259201.1 antisense AC090971.2 2 OTTHUMG00000172538.1 +24454 chr15 ENSEMBL gene 51907200 51907305 106.0 + 0 ENSG00000272337.1 snRNA RNU6-90P 3 +24455 chr15 HAVANA gene 51908902 51909642 510.0 - 0 ENSG00000259185.1 antisense AC090971.1 2 OTTHUMG00000172539.1 +24456 chr15 HAVANA gene 51919073 51930627 1041.0 - 0 ENSG00000259556.2 unprocessed_pseudogene AC090971.3 1 OTTHUMG00000172529.2 pseudo_consens +24457 chr15 HAVANA gene 51829628 51947295 10632.0 + 0 ENSG00000138594.13 protein_coding TMOD3 1 OTTHUMG00000131803.7 ncRNA_host,overlapping_locus +24458 chr15 HAVANA gene 51938025 51971806 2679.0 - 0 ENSG00000166477.12 protein_coding LEO1 2 OTTHUMG00000131843.2 +24459 chr15 HAVANA gene 52017167 52018032 866.0 - 0 ENSG00000274528.1 sense_intronic AC090970.2 2 OTTHUMG00000186862.1 overlapping_locus +24460 chr15 HAVANA gene 52010999 52019095 865.0 - 0 ENSG00000259438.1 lincRNA MAPK6-DT 2 OTTHUMG00000172595.1 overlapping_locus +24461 chr15 HAVANA gene 52033707 52035625 381.0 + 0 ENSG00000259398.1 sense_intronic AC090970.1 2 OTTHUMG00000172590.2 overlapping_locus +24462 chr15 HAVANA gene 51952106 52067372 6388.0 + 0 ENSG00000069956.11 protein_coding MAPK6 1 OTTHUMG00000131891.3 overlapping_locus +24463 chr15 HAVANA gene 52082302 52086574 462.0 + 0 ENSG00000259178.1 lincRNA AC023906.2 2 OTTHUMG00000172597.1 +24464 chr15 HAVANA gene 52095295 52095747 453.0 + 0 ENSG00000242327.1 processed_pseudogene AC023906.1 1 OTTHUMG00000157921.1 pseudo_consens +24465 chr15 HAVANA gene 52056675 52100523 635.0 - 0 ENSG00000259712.1 antisense AC023906.5 2 OTTHUMG00000172596.1 +24466 chr15 HAVANA gene 52109263 52112775 1319.0 - 0 ENSG00000137875.4 protein_coding BCL2L10 1 OTTHUMG00000131893.2 +24467 chr15 HAVANA gene 52116574 52122131 874.0 + 0 ENSG00000259327.1 lincRNA AC023906.3 2 OTTHUMG00000172599.1 +24468 chr15 HAVANA gene 52124561 52140246 1538.0 + 0 ENSG00000259709.1 antisense AC023906.4 2 OTTHUMG00000172600.1 +24469 chr15 ENSEMBL gene 52162751 52162852 102.0 + 0 ENSG00000206995.1 misc_RNA RF00019 3 +24470 chr15 HAVANA gene 52115105 52191369 13302.0 - 0 ENSG00000069966.18 protein_coding GNB5 1 OTTHUMG00000131892.4 +24471 chr15 HAVANA gene 52180093 52205874 2096.0 + 0 ENSG00000259577.1 lincRNA CERNA1 2 OTTHUMG00000172601.1 +24472 chr15 ENSEMBL gene 52277117 52277200 84.0 - 0 ENSG00000221052.3 miRNA MIR1266 3 +24473 chr15 HAVANA gene 52192322 52295798 10045.0 - 0 ENSG00000128833.12 protein_coding MYO5C 2 OTTHUMG00000172630.2 ncRNA_host +24474 chr15 HAVANA gene 52505191 52505862 672.0 + 0 ENSG00000231169.4 processed_pseudogene EEF1B2P1 1 OTTHUMG00000172676.2 pseudo_consens +24475 chr15 HAVANA gene 52307283 52529050 12988.0 - 0 ENSG00000197535.14 protein_coding MYO5A 2 OTTHUMG00000137383.6 +24476 chr15 HAVANA gene 52547045 52569883 6917.0 - 0 ENSG00000128989.10 protein_coding ARPP19 1 OTTHUMG00000172677.3 +24477 chr15 HAVANA gene 52577842 52598709 1211.0 + 0 ENSG00000260618.1 antisense AC025917.1 2 OTTHUMG00000172687.1 +24478 chr15 HAVANA gene 52648634 52649866 540.0 - 0 ENSG00000259935.1 sense_intronic AC009754.1 2 OTTHUMG00000172689.1 overlapping_locus +24479 chr15 HAVANA gene 52581317 52709817 9832.0 - 0 ENSG00000047346.12 protein_coding FAM214A 1 OTTHUMG00000172688.3 overlapping_locus +24480 chr15 HAVANA gene 52756989 52791078 3850.0 - 0 ENSG00000169856.8 protein_coding ONECUT1 1 OTTHUMG00000131899.6 +24481 chr15 HAVANA gene 52801614 52804942 572.0 - 0 ENSG00000259203.1 lincRNA AC016044.1 2 OTTHUMG00000172420.1 +24482 chr15 HAVANA gene 52885595 52886470 876.0 + 0 ENSG00000214896.4 processed_pseudogene RPSAP55 1 OTTHUMG00000157924.1 pseudo_consens +24483 chr15 HAVANA gene 52937139 52938518 1380.0 - 0 ENSG00000259612.1 processed_pseudogene EEF1A1P22 1 OTTHUMG00000172482.1 pseudo_consens +24484 chr15 HAVANA gene 53116365 53129698 601.0 + 0 ENSG00000259237.1 lincRNA LINC02490 2 OTTHUMG00000172483.1 +24485 chr15 ENSEMBL gene 53651977 53652123 147.0 + 0 ENSG00000252066.1 snRNA RNU2-53P 3 +24486 chr15 HAVANA gene 53513741 53762878 8572.0 - 0 ENSG00000166415.14 protein_coding WDR72 1 OTTHUMG00000131939.5 +24487 chr15 ENSEMBL gene 53764204 53764310 107.0 + 0 ENSG00000206641.1 snRNA RNU6-449P 3 +24488 chr15 HAVANA gene 53837271 53837560 290.0 - 0 ENSG00000259301.2 processed_pseudogene AC084759.1 1 OTTHUMG00000172516.2 pseudo_consens +24489 chr15 HAVANA gene 53910769 53914712 3944.0 + 0 ENSG00000280362.1 TEC AC084759.3 2 OTTHUMG00000176909.1 +24490 chr15 HAVANA gene 53947624 53976908 1295.0 - 0 ENSG00000259669.5 lincRNA AC084759.2 2 OTTHUMG00000172517.2 +24491 chr15 HAVANA gene 54048588 54050876 2289.0 - 0 ENSG00000259619.2 processed_pseudogene AC010867.1 1 OTTHUMG00000172592.2 pseudo_consens +24492 chr15 HAVANA gene 54320731 54321565 835.0 - 0 ENSG00000259550.2 processed_pseudogene HNRNPA1P74 1 OTTHUMG00000172593.2 pseudo_consens +24493 chr15 HAVANA gene 53978201 54633414 14440.0 + 0 ENSG00000137766.17 protein_coding UNC13C 1 OTTHUMG00000172542.8 +24494 chr15 HAVANA gene 55056747 55092173 518.0 + 0 ENSG00000260937.5 lincRNA AC025272.1 2 OTTHUMG00000172651.1 +24495 chr15 HAVANA gene 55171378 55176739 5362.0 - 0 ENSG00000279145.2 lincRNA AC011912.1 2 OTTHUMG00000172652.3 +24496 chr15 HAVANA gene 55180806 55197067 3009.0 - 0 ENSG00000137876.9 protein_coding RSL24D1 2 OTTHUMG00000131957.3 +24497 chr15 HAVANA gene 55288849 55289346 498.0 - 0 ENSG00000276533.1 sense_intronic AC018926.2 2 OTTHUMG00000186896.1 overlapping_locus +24498 chr15 HAVANA gene 55202966 55319113 5605.0 - 0 ENSG00000069974.15 protein_coding RAB27A 2 OTTHUMG00000131959.3 overlapping_locus +24499 chr15 HAVANA gene 55317184 55319161 982.0 - 0 ENSG00000225973.3 protein_coding PIGBOS1 2 OTTHUMG00000172653.5 overlapping_locus +24500 chr15 HAVANA gene 55343141 55343575 435.0 - 0 ENSG00000274765.1 sense_intronic AC018926.1 2 OTTHUMG00000186899.1 overlapping_locus +24501 chr15 HAVANA gene 55346347 55346752 406.0 - 0 ENSG00000277548.1 sense_intronic AC018926.3 2 OTTHUMG00000186898.1 overlapping_locus +24502 chr15 HAVANA gene 55318960 55355648 4542.0 + 0 ENSG00000069943.9 protein_coding PIGB 1 OTTHUMG00000172654.1 +24503 chr15 ENSEMBL gene 55372940 55373034 95.0 - 0 ENSG00000283891.1 miRNA MIR628 3 +24504 chr15 HAVANA gene 55340032 55408510 8790.0 - 0 ENSG00000260916.7 protein_coding CCPG1 1 OTTHUMG00000172678.3 ncRNA_host,overlapping_locus +24505 chr15 HAVANA gene 55408548 55418764 843.0 + 0 ENSG00000261652.2 protein_coding C15orf65 2 OTTHUMG00000172679.2 +24506 chr15 HAVANA gene 55442635 55443357 723.0 - 0 ENSG00000260036.1 processed_pseudogene AC013355.1 1 OTTHUMG00000172695.1 pseudo_consens,overlapping_locus +24507 chr15 HAVANA gene 55355248 55498360 4589.0 - 0 ENSG00000261771.5 processed_transcript DNAAF4-CCPG1 2 OTTHUMG00000172694.1 ncRNA_host,overlapping_locus +24508 chr15 HAVANA gene 55410525 55508234 2934.0 - 0 ENSG00000256061.7 protein_coding DNAAF4 2 OTTHUMG00000132008.2 overlapping_locus +24509 chr15 HAVANA gene 55538890 55588947 8594.0 - 0 ENSG00000171016.12 protein_coding PYGO1 2 OTTHUMG00000132009.4 +24510 chr15 HAVANA gene 55588666 55589811 663.0 + 0 ENSG00000285805.1 antisense AC012378.2 2 OTTHUMG00000193225.1 +24511 chr15 HAVANA gene 55680385 55681463 364.0 + 0 ENSG00000259180.1 antisense AC012378.1 2 OTTHUMG00000172615.1 +24512 chr15 HAVANA gene 55611546 55743090 14566.0 - 0 ENSG00000166450.12 protein_coding PRTG 1 OTTHUMG00000172591.4 +24513 chr15 HAVANA gene 55746639 55746767 129.0 + 0 ENSG00000259369.1 processed_pseudogene AC009997.1 2 OTTHUMG00000172616.1 +24514 chr15 HAVANA gene 55826922 55993746 9097.0 - 0 ENSG00000069869.16 protein_coding NEDD4 1 OTTHUMG00000132015.6 +24515 chr15 HAVANA gene 56005715 56007176 1462.0 - 0 ENSG00000230183.4 processed_pseudogene CNOT6LP1 1 OTTHUMG00000172614.1 pseudo_consens +24516 chr15 ENSEMBL gene 56029684 56029981 298.0 - 0 ENSG00000239703.3 misc_RNA RN7SL568P 3 +24517 chr15 HAVANA gene 56071421 56071639 219.0 + 0 ENSG00000261333.2 processed_pseudogene CD24P2 2 OTTHUMG00000176398.2 +24518 chr15 HAVANA gene 56192353 56193262 910.0 - 0 ENSG00000261072.2 processed_pseudogene AC084783.1 1 OTTHUMG00000176399.2 pseudo_consens,overlapping_locus +24519 chr15 HAVANA gene 56087280 56243266 10588.0 - 0 ENSG00000181827.14 protein_coding RFX7 2 OTTHUMG00000172508.6 overlapping_locus +24520 chr15 HAVANA gene 56248787 56249127 341.0 + 0 ENSG00000275417.1 sense_intronic AC068726.1 2 OTTHUMG00000186900.1 overlapping_locus +24521 chr15 ENSEMBL gene 56274530 56274636 107.0 - 0 ENSG00000199784.1 snRNA RNU6-1287P 3 +24522 chr15 HAVANA gene 56323193 56323719 527.0 + 0 ENSG00000261174.2 processed_pseudogene HMGB1P33 1 OTTHUMG00000172638.2 pseudo_consens,overlapping_locus +24523 chr15 HAVANA gene 56394321 56396785 2465.0 - 0 ENSG00000259941.1 lincRNA AC084782.1 2 OTTHUMG00000176401.1 +24524 chr15 HAVANA gene 56408483 56410186 839.0 - 0 ENSG00000261823.1 lincRNA AC084782.2 2 OTTHUMG00000176402.1 +24525 chr15 HAVANA gene 56244009 56445997 8290.0 + 0 ENSG00000151575.14 protein_coding TEX9 1 OTTHUMG00000132035.6 overlapping_locus +24526 chr15 HAVANA gene 56447120 56447697 578.0 + 0 ENSG00000277245.1 antisense AC084782.3 2 OTTHUMG00000186901.1 +24527 chr15 HAVANA gene 56421544 56465137 2504.0 - 0 ENSG00000138587.5 protein_coding MNS1 2 OTTHUMG00000132034.3 +24528 chr15 HAVANA gene 56542952 56629592 1510.0 - 0 ENSG00000260392.5 lincRNA AC090518.1 2 OTTHUMG00000172797.2 +24529 chr15 ENSEMBL gene 56634038 56634167 130.0 - 0 ENSG00000276696.1 misc_RNA RF00019 3 +24530 chr15 HAVANA gene 56729932 56730611 680.0 - 0 ENSG00000274667.1 sense_intronic AC090517.2 2 OTTHUMG00000186904.1 overlapping_locus +24531 chr15 HAVANA gene 56630181 56734086 12113.0 - 0 ENSG00000137871.20 protein_coding ZNF280D 1 OTTHUMG00000172509.7 ncRNA_host,overlapping_locus +24532 chr15 HAVANA gene 56795382 56795522 141.0 + 0 ENSG00000279683.1 TEC AC090517.3 2 OTTHUMG00000176403.1 +24533 chr15 HAVANA gene 56846340 56846605 266.0 + 0 ENSG00000225625.4 processed_pseudogene AC090517.1 1 OTTHUMG00000172639.2 pseudo_consens +24534 chr15 HAVANA gene 56887107 56888219 596.0 + 0 ENSG00000276524.1 lincRNA AC010999.2 2 OTTHUMG00000186905.1 +24535 chr15 HAVANA gene 56908312 56908635 324.0 - 0 ENSG00000275343.1 sense_intronic AC010999.1 2 OTTHUMG00000186906.1 overlapping_locus +24536 chr15 HAVANA gene 56795460 56918499 6467.0 - 0 ENSG00000285331.2 processed_transcript AC090517.5 2 OTTHUMG00000192444.2 overlapping_locus +24537 chr15 HAVANA gene 56652488 56918571 5049.0 - 0 ENSG00000285253.1 protein_coding AC090517.4 2 OTTHUMG00000192443.1 overlapping_locus +24538 chr15 HAVANA gene 57246960 57247893 934.0 - 0 ENSG00000260689.2 processed_pseudogene HNRNPA3P11 1 OTTHUMG00000172640.2 pseudo_consens +24539 chr15 ENSEMBL gene 57278570 57278673 104.0 - 0 ENSG00000239035.1 snoRNA RF01210 3 +24540 chr15 HAVANA gene 56918623 57299281 9446.0 + 0 ENSG00000140262.17 protein_coding TCF12 1 OTTHUMG00000132047.13 +24541 chr15 HAVANA gene 57300365 57307769 3669.0 + 0 ENSG00000247982.6 lincRNA LINC00926 2 OTTHUMG00000172641.2 +24542 chr15 HAVANA gene 57319138 57323908 772.0 + 0 ENSG00000260172.1 lincRNA LINC01413 2 OTTHUMG00000176406.1 +24543 chr15 HAVANA gene 57325472 57326447 521.0 - 0 ENSG00000260870.1 processed_pseudogene NDUFB10P1 1 OTTHUMG00000176412.1 pseudo_consens +24544 chr15 ENSEMBL gene 57405074 57405175 102.0 - 0 ENSG00000252984.1 snRNA RNU6-844P 3 +24545 chr15 HAVANA gene 57477484 57478329 255.0 - 0 ENSG00000261489.1 lincRNA AC025271.3 2 OTTHUMG00000176407.1 +24546 chr15 HAVANA gene 57527187 57529009 800.0 - 0 ENSG00000261265.1 lincRNA AC025271.2 2 OTTHUMG00000176408.1 +24547 chr15 HAVANA gene 57375967 57550727 8663.0 + 0 ENSG00000128849.10 protein_coding CGNL1 2 OTTHUMG00000166485.3 +24548 chr15 HAVANA gene 57553955 57555680 1726.0 + 0 ENSG00000276772.1 lincRNA AC025271.4 2 OTTHUMG00000173069.1 +24549 chr15 HAVANA gene 57555951 57556379 429.0 - 0 ENSG00000240874.1 processed_pseudogene AC025271.1 1 OTTHUMG00000157937.1 pseudo_consens +24550 chr15 HAVANA gene 57591941 57685364 2561.0 + 0 ENSG00000263155.5 protein_coding MYZAP 2 OTTHUMG00000132453.7 overlapping_locus +24551 chr15 HAVANA gene 57591908 57714745 6909.0 + 0 ENSG00000137878.17 protein_coding GCOM1 2 OTTHUMG00000176411.5 overlapping_locus +24552 chr15 HAVANA gene 57720295 57720928 634.0 + 0 ENSG00000261219.1 lincRNA AC090651.1 2 OTTHUMG00000176410.1 overlapping_locus +24553 chr15 HAVANA gene 57706629 57782762 6574.0 + 0 ENSG00000255529.8 protein_coding POLR2M 2 OTTHUMG00000166486.5 overlapping_locus +24554 chr15 HAVANA gene 57979716 57980646 931.0 - 0 ENSG00000259477.1 processed_pseudogene AC012653.1 1 OTTHUMG00000172005.1 pseudo_consens,overlapping_locus +24555 chr15 HAVANA gene 57990217 57990636 420.0 - 0 ENSG00000274719.1 sense_intronic AC012653.2 2 OTTHUMG00000186908.1 overlapping_locus +24556 chr15 HAVANA gene 58065225 58071043 874.0 + 0 ENSG00000259285.1 antisense AC025431.1 2 OTTHUMG00000172006.1 +24557 chr15 HAVANA gene 58150275 58150563 289.0 + 0 ENSG00000259651.2 processed_pseudogene MTCO3P23 2 OTTHUMG00000171994.2 overlapping_locus +24558 chr15 HAVANA gene 58150635 58150962 328.0 + 0 ENSG00000259626.2 processed_pseudogene MTND3P12 2 OTTHUMG00000171995.2 overlapping_locus +24559 chr15 HAVANA gene 58151033 58152513 1481.0 + 0 ENSG00000259600.2 processed_pseudogene AC066616.2 2 OTTHUMG00000171996.2 overlapping_locus +24560 chr15 HAVANA gene 58152606 58154407 1802.0 + 0 ENSG00000259379.1 processed_pseudogene MTND5P32 2 OTTHUMG00000171998.1 overlapping_locus +24561 chr15 HAVANA gene 58154960 58156061 1102.0 + 0 ENSG00000259671.1 processed_pseudogene MTCYBP23 2 OTTHUMG00000171999.1 overlapping_locus +24562 chr15 HAVANA gene 58138169 58185911 3235.0 + 0 ENSG00000103569.9 protein_coding AQP9 1 OTTHUMG00000132631.2 overlapping_locus +24563 chr15 HAVANA gene 58200606 58201018 413.0 + 0 ENSG00000240934.2 processed_pseudogene AC066616.1 1 OTTHUMG00000157940.2 pseudo_consens +24564 chr15 HAVANA gene 58454327 58454982 656.0 + 0 ENSG00000277229.1 sense_intronic AC084781.1 2 OTTHUMG00000186909.1 overlapping_locus +24565 chr15 HAVANA gene 58456188 58456348 161.0 + 0 ENSG00000277790.1 sense_intronic AC084781.2 2 OTTHUMG00000186910.1 overlapping_locus +24566 chr15 HAVANA gene 57953424 58497866 8622.0 - 0 ENSG00000128918.14 protein_coding ALDH1A2 2 OTTHUMG00000132624.5 overlapping_locus +24567 chr15 HAVANA gene 58434890 58498735 2231.0 - 0 ENSG00000259293.1 antisense LIPC-AS1 2 OTTHUMG00000171977.1 overlapping_locus +24568 chr15 HAVANA gene 58521311 58523371 1757.0 + 0 ENSG00000259476.1 sense_intronic AC018904.2 2 OTTHUMG00000171978.1 overlapping_locus +24569 chr15 HAVANA gene 58410569 58569843 5184.0 + 0 ENSG00000166035.10 protein_coding LIPC 1 OTTHUMG00000132632.3 overlapping_locus +24570 chr15 HAVANA gene 58587507 58591676 542.0 + 0 ENSG00000259250.1 antisense AC018904.1 2 OTTHUMG00000171979.1 +24571 chr15 HAVANA gene 58672296 58672933 638.0 + 0 ENSG00000270986.1 processed_pseudogene HMGB1P51 1 OTTHUMG00000184879.1 pseudo_consens +24572 chr15 HAVANA gene 58686411 58686617 207.0 + 0 ENSG00000182625.3 processed_pseudogene AC091046.1 1 OTTHUMG00000171980.1 pseudo_consens +24573 chr15 HAVANA gene 58691106 58693125 1574.0 - 0 ENSG00000282100.1 processed_pseudogene HSP90AB4P 1 OTTHUMG00000191302.1 pseudo_consens +24574 chr15 ENSEMBL gene 58703852 58704154 303.0 - 0 ENSG00000199730.1 misc_RNA RN7SKP95 3 +24575 chr15 HAVANA gene 58732188 58733149 665.0 + 0 ENSG00000278513.1 unprocessed_pseudogene AC091046.2 2 OTTHUMG00000187862.1 +24576 chr15 HAVANA gene 58588807 58749978 16168.0 - 0 ENSG00000137845.14 protein_coding ADAM10 1 OTTHUMG00000132633.10 ncRNA_host +24577 chr15 HAVANA gene 58755625 58756247 315.0 - 0 ENSG00000259173.2 processed_pseudogene AC090515.3 1 OTTHUMG00000171981.2 pseudo_consens +24578 chr15 ENSEMBL gene 58760466 58760681 216.0 - 0 ENSG00000200318.2 snoRNA RF00012 3 +24579 chr15 HAVANA gene 58768072 58770974 1396.0 - 0 ENSG00000245975.2 lincRNA AC090515.2 2 OTTHUMG00000171982.1 +24580 chr15 HAVANA gene 58815272 58817728 526.0 + 0 ENSG00000259402.1 sense_intronic AC090515.5 2 OTTHUMG00000171984.1 overlapping_locus +24581 chr15 HAVANA gene 58771192 58861900 9454.0 + 0 ENSG00000128923.10 protein_coding MINDY2 2 OTTHUMG00000171983.2 overlapping_locus +24582 chr15 HAVANA gene 58856831 58865063 450.0 - 0 ENSG00000259353.1 antisense AC090515.4 2 OTTHUMG00000171985.1 +24583 chr15 HAVANA gene 58865006 58865303 298.0 + 0 ENSG00000259738.1 processed_pseudogene ZNF444P1 2 OTTHUMG00000171986.1 overlapping_locus +24584 chr15 HAVANA gene 58869659 58870134 476.0 + 0 ENSG00000242747.1 processed_pseudogene AC090515.1 1 OTTHUMG00000157941.1 pseudo_consens,overlapping_locus +24585 chr15 HAVANA gene 58889967 58894082 383.0 + 0 ENSG00000225798.1 antisense AC025918.1 2 OTTHUMG00000074032.1 overlapping_locus +24586 chr15 HAVANA gene 58879045 58933653 8157.0 - 0 ENSG00000137776.16 protein_coding SLTM 2 OTTHUMG00000074033.4 +24587 chr15 HAVANA gene 58967046 58967808 763.0 - 0 ENSG00000259393.2 processed_pseudogene AC025918.2 2 OTTHUMG00000171952.2 +24588 chr15 HAVANA gene 59049399 59050385 467.0 - 0 ENSG00000241640.2 processed_pseudogene AC092757.1 1 OTTHUMG00000157944.3 pseudo_consens +24589 chr15 HAVANA gene 58865175 59097419 7181.0 + 0 ENSG00000157450.15 protein_coding RNF111 1 OTTHUMG00000132716.3 overlapping_locus +24590 chr15 HAVANA gene 59115547 59116089 543.0 - 0 ENSG00000277144.1 lincRNA AC092757.3 2 OTTHUMG00000186912.1 +24591 chr15 HAVANA gene 59105078 59125045 2801.0 + 0 ENSG00000157456.7 protein_coding CCNB2 1 OTTHUMG00000132715.2 overlapping_locus +24592 chr15 HAVANA gene 59121034 59133250 633.0 + 0 ENSG00000259732.1 sense_overlapping AC092757.2 2 OTTHUMG00000171943.1 overlapping_locus +24593 chr15 ENSEMBL gene 59171183 59171262 80.0 - 0 ENSG00000253030.1 miRNA MIR2116 3 +24594 chr15 HAVANA gene 59206823 59208515 1693.0 + 0 ENSG00000171989.5 protein_coding LDHAL6B 2 OTTHUMG00000132714.1 retrogene +24595 chr15 ENSEMBL gene 59212648 59212788 141.0 - 0 ENSG00000200070.1 snRNA RNU4-80P 3 +24596 chr15 HAVANA gene 59266720 59271162 448.0 - 0 ENSG00000259771.1 sense_intronic AC092756.1 2 OTTHUMG00000171945.1 overlapping_locus +24597 chr15 ENSEMBL gene 59341314 59341417 104.0 - 0 ENSG00000199512.1 snRNA RNU6-212P 3 +24598 chr15 HAVANA gene 59348648 59359889 497.0 - 0 ENSG00000259735.1 sense_intronic AC092868.2 2 OTTHUMG00000171946.1 overlapping_locus +24599 chr15 HAVANA gene 59132434 59372900 9106.0 - 0 ENSG00000157483.8 protein_coding MYO1E 1 OTTHUMG00000171944.3 ncRNA_host,overlapping_locus +24600 chr15 HAVANA gene 59401221 59402004 784.0 - 0 ENSG00000259750.1 processed_pseudogene AC092868.3 1 OTTHUMG00000171922.1 pseudo_consens +24601 chr15 HAVANA gene 59406963 59408154 802.0 - 0 ENSG00000259674.1 processed_pseudogene AC092868.1 1 OTTHUMG00000171923.1 pseudo_consens +24602 chr15 ENSEMBL gene 59408905 59409015 111.0 + 0 ENSG00000200252.1 misc_RNA RF00019 3 +24603 chr15 HAVANA gene 59372693 59523549 5578.0 + 0 ENSG00000157470.11 protein_coding FAM81A 1 OTTHUMG00000171915.2 ncRNA_host +24604 chr15 HAVANA gene 59525422 59525881 460.0 - 0 ENSG00000243780.1 processed_pseudogene AC092754.2 1 OTTHUMG00000157948.1 pseudo_consens +24605 chr15 HAVANA gene 59552615 59553093 479.0 - 0 ENSG00000240238.1 processed_pseudogene AC092754.1 1 OTTHUMG00000157949.1 pseudo_consens +24606 chr15 ENSEMBL gene 59574103 59574222 120.0 - 0 ENSG00000201704.1 rRNA_pseudogene RNA5SP396 3 +24607 chr15 HAVANA gene 59594875 59640239 6475.0 + 0 ENSG00000140297.12 protein_coding GCNT3 1 OTTHUMG00000132726.5 +24608 chr15 HAVANA gene 59638062 59657541 3204.0 - 0 ENSG00000140307.10 protein_coding GTF2A2 1 OTTHUMG00000132725.4 overlapping_locus +24609 chr15 HAVANA gene 59644298 59672302 97.0 - 0 ENSG00000227161.1 sense_overlapping AC092755.1 2 OTTHUMG00000152880.1 overlapping_locus +24610 chr15 HAVANA gene 59676757 59677321 565.0 + 0 ENSG00000259657.1 processed_pseudogene PIGHP1 1 OTTHUMG00000171924.1 pseudo_consens +24611 chr15 HAVANA gene 59688517 59689418 402.0 + 0 ENSG00000259238.1 antisense AC092755.2 2 OTTHUMG00000171925.1 +24612 chr15 HAVANA gene 59659146 59689534 7969.0 - 0 ENSG00000140299.11 protein_coding BNIP2 2 OTTHUMG00000132727.5 overlapping_locus +24613 chr15 HAVANA gene 59768352 59769146 795.0 + 0 ENSG00000234797.5 processed_pseudogene RPS3AP6 2 OTTHUMG00000157954.1 +24614 chr15 HAVANA gene 59871511 59873495 1985.0 - 0 ENSG00000259601.2 processed_pseudogene AC092079.1 1 OTTHUMG00000172009.2 pseudo_consens +24615 chr15 HAVANA gene 59964942 59966084 841.0 + 0 ENSG00000259573.1 processed_pseudogene NMNAT1P5 1 OTTHUMG00000172010.1 pseudo_consens +24616 chr15 HAVANA gene 60053204 60054092 889.0 - 0 ENSG00000259558.1 processed_pseudogene MESTP2 1 OTTHUMG00000172012.1 pseudo_consens +24617 chr15 HAVANA gene 60004222 60061730 3615.0 + 0 ENSG00000171956.6 protein_coding FOXB1 1 OTTHUMG00000172011.2 +24618 chr15 HAVANA gene 60073554 60118320 757.0 - 0 ENSG00000259223.2 lincRNA AC009654.1 2 OTTHUMG00000172013.2 +24619 chr15 HAVANA gene 60390371 60390682 312.0 + 0 ENSG00000240163.1 processed_pseudogene AC087385.1 1 OTTHUMG00000157957.1 pseudo_consens +24620 chr15 HAVANA gene 60347134 60402883 8824.0 - 0 ENSG00000182718.16 protein_coding ANXA2 1 OTTHUMG00000132763.5 +24621 chr15 HAVANA gene 60404463 60404960 498.0 + 0 ENSG00000242667.1 processed_pseudogene AC087385.2 1 OTTHUMG00000157960.1 pseudo_consens +24622 chr15 HAVANA gene 60409234 60409420 187.0 - 0 ENSG00000273721.1 unprocessed_pseudogene AC087385.3 2 OTTHUMG00000187863.1 +24623 chr15 HAVANA gene 60419609 60479160 16010.0 - 0 ENSG00000128915.11 protein_coding ICE2 2 OTTHUMG00000132764.3 +24624 chr15 HAVANA gene 60529973 60545159 434.0 + 0 ENSG00000259274.1 antisense AC107241.1 2 OTTHUMG00000172104.1 overlapping_locus +24625 chr15 HAVANA gene 60558080 60558401 322.0 + 0 ENSG00000259513.1 transcribed_processed_pseudogene CYCSP38 1 OTTHUMG00000172105.2 pseudo_consens,overlapping_locus +24626 chr15 HAVANA gene 60593027 60593460 434.0 + 0 ENSG00000273958.1 lincRNA AC009560.1 2 OTTHUMG00000186916.1 overlapping_locus +24627 chr15 HAVANA gene 60479178 60630637 2036.0 + 0 ENSG00000245534.6 antisense RORA-AS1 2 OTTHUMG00000172103.2 overlapping_locus +24628 chr15 ENSEMBL gene 60677109 60677272 164.0 - 0 ENSG00000277413.1 misc_RNA RF02271 3 +24629 chr15 HAVANA gene 60681569 60686888 664.0 + 0 ENSG00000259482.1 antisense RORA-AS2 2 OTTHUMG00000172106.1 +24630 chr15 ENSEMBL gene 60736769 60736886 118.0 + 0 ENSG00000212625.1 rRNA_pseudogene RNA5SP397 3 +24631 chr15 HAVANA gene 60763906 60765625 982.0 + 0 ENSG00000259591.1 antisense AC022898.1 2 OTTHUMG00000172107.1 +24632 chr15 HAVANA gene 60847757 60849068 1312.0 - 0 ENSG00000273792.1 sense_intronic AC022898.2 2 OTTHUMG00000186917.1 overlapping_locus +24633 chr15 HAVANA gene 61181249 61195938 476.0 + 0 ENSG00000259481.1 antisense AC012404.1 2 OTTHUMG00000172108.1 +24634 chr15 HAVANA gene 61211913 61214231 481.0 + 0 ENSG00000259575.1 antisense AC012404.2 2 OTTHUMG00000172109.1 +24635 chr15 HAVANA gene 60488284 61229319 17040.0 - 0 ENSG00000069667.15 protein_coding RORA 1 OTTHUMG00000132769.7 ncRNA_host,overlapping_locus +24636 chr15 HAVANA gene 61239906 61240331 426.0 + 0 ENSG00000276473.1 lincRNA AC107905.1 2 OTTHUMG00000186918.1 +24637 chr15 HAVANA gene 61598514 61605241 925.0 + 0 ENSG00000259530.1 lincRNA AC104574.1 2 OTTHUMG00000171938.1 +24638 chr15 HAVANA gene 61298791 61635449 1985.0 - 0 ENSG00000259616.2 lincRNA AC104574.2 2 OTTHUMG00000172469.2 +24639 chr15 HAVANA gene 61674767 61675212 446.0 + 0 ENSG00000271195.1 processed_pseudogene AC018618.2 1 OTTHUMG00000184881.1 pseudo_consens +24640 chr15 HAVANA gene 61639349 61715171 434.0 - 0 ENSG00000259675.1 lincRNA AC018618.1 2 OTTHUMG00000171939.1 +24641 chr15 HAVANA gene 61729850 61731389 963.0 + 0 ENSG00000259284.1 lincRNA LINC02349 2 OTTHUMG00000171940.2 +24642 chr15 HAVANA gene 61861109 61894164 589.0 + 0 ENSG00000285863.1 antisense AC009554.2 2 OTTHUMG00000192767.1 +24643 chr15 HAVANA gene 61834682 61935738 1121.0 + 0 ENSG00000259564.2 antisense AC009554.1 2 OTTHUMG00000172485.2 +24644 chr15 HAVANA gene 61852389 62060473 18992.0 - 0 ENSG00000129003.17 protein_coding VPS13C 2 OTTHUMG00000132801.5 +24645 chr15 HAVANA gene 62060503 62062434 1932.0 + 0 ENSG00000259251.2 antisense AC104590.1 2 OTTHUMG00000171941.2 +24646 chr15 HAVANA gene 62066977 62070917 3445.0 + 0 ENSG00000198535.5 protein_coding C2CD4A 2 OTTHUMG00000171942.2 +24647 chr15 HAVANA gene 62082450 62083305 856.0 - 0 ENSG00000259466.1 processed_pseudogene NPM1P47 1 OTTHUMG00000171958.1 pseudo_consens +24648 chr15 HAVANA gene 62163535 62165283 1579.0 - 0 ENSG00000205502.3 protein_coding C2CD4B 2 OTTHUMG00000171959.1 +24649 chr15 HAVANA gene 62196145 62203318 2369.0 - 0 ENSG00000259697.1 lincRNA AC126323.2 2 OTTHUMG00000171960.1 +24650 chr15 HAVANA gene 62230384 62231895 564.0 - 0 ENSG00000259878.1 lincRNA AC126323.3 2 OTTHUMG00000173102.1 overlapping_locus +24651 chr15 ENSEMBL gene 62244330 62244595 266.0 - 0 ENSG00000276713.1 misc_RNA RF00017 3 +24652 chr15 HAVANA gene 62227896 62253235 3896.0 - 0 ENSG00000166104.15 transcribed_unprocessed_pseudogene AC126323.1 1 OTTHUMG00000173101.2 pseudo_consens,overlapping_locus +24653 chr15 HAVANA gene 62255686 62256421 234.0 - 0 ENSG00000260375.1 unprocessed_pseudogene AC126323.4 2 OTTHUMG00000173104.1 overlapping_locus +24654 chr15 HAVANA gene 62253730 62270680 5272.0 - 0 ENSG00000260062.3 transcribed_unprocessed_pseudogene GOLGA2P11 2 OTTHUMG00000173103.1 overlapping_locus +24655 chr15 HAVANA gene 62274163 62278365 3624.0 + 0 ENSG00000261296.1 lincRNA AC126323.6 2 OTTHUMG00000173105.1 +24656 chr15 HAVANA gene 62284190 62285006 592.0 + 0 ENSG00000260957.1 lincRNA AC126323.5 2 OTTHUMG00000173106.1 +24657 chr15 ENSEMBL gene 62304658 62304734 77.0 - 0 ENSG00000277919.1 miRNA MIR8067 3 +24658 chr15 ENSEMBL gene 62343029 62343138 110.0 + 0 ENSG00000275451.1 miRNA MIR6085 3 +24659 chr15 HAVANA gene 62362029 62362331 303.0 - 0 ENSG00000259557.2 processed_pseudogene HMGN1P26 1 OTTHUMG00000171962.2 pseudo_consens +24660 chr15 HAVANA gene 62387327 62388875 1549.0 - 0 ENSG00000274340.1 lincRNA AC032011.1 2 OTTHUMG00000172312.1 +24661 chr15 HAVANA gene 62637172 62645291 2425.0 - 0 ENSG00000259458.1 antisense MGC15885 1 OTTHUMG00000172037.1 +24662 chr15 HAVANA gene 62682916 62690448 577.0 - 0 ENSG00000259756.1 antisense AC100839.1 2 OTTHUMG00000172038.1 +24663 chr15 ENSEMBL gene 62823957 62824041 85.0 + 0 ENSG00000211137.1 miRNA MIR190A 3 +24664 chr15 HAVANA gene 62390526 62844631 16209.0 + 0 ENSG00000171914.16 protein_coding TLN2 1 OTTHUMG00000133679.4 ncRNA_host +24665 chr15 HAVANA gene 62827675 62884034 8535.0 - 0 ENSG00000259370.2 antisense AC103740.1 2 OTTHUMG00000172039.2 +24666 chr15 HAVANA gene 62895812 62899543 1225.0 + 0 ENSG00000259727.1 lincRNA AC103740.2 2 OTTHUMG00000172040.1 +24667 chr15 HAVANA gene 62953173 62954124 952.0 + 0 ENSG00000259394.2 processed_pseudogene AC079328.1 1 OTTHUMG00000172145.2 pseudo_consens +24668 chr15 HAVANA gene 63046034 63049387 3354.0 - 0 ENSG00000259498.1 antisense TPM1-AS 2 OTTHUMG00000172299.1 +24669 chr15 HAVANA gene 63070025 63071911 691.0 - 0 ENSG00000259627.1 antisense AC079328.2 2 OTTHUMG00000172146.1 +24670 chr15 HAVANA gene 63042632 63071915 12492.0 + 0 ENSG00000140416.20 protein_coding TPM1 2 OTTHUMG00000132803.13 +24671 chr15 HAVANA gene 63091367 63110589 1277.0 + 0 ENSG00000259672.2 lincRNA AC087612.1 2 OTTHUMG00000172300.3 +24672 chr15 HAVANA gene 63121800 63142061 3972.0 + 0 ENSG00000103642.11 protein_coding LACTB 2 OTTHUMG00000132807.5 +24673 chr15 HAVANA gene 63125872 63158021 9127.0 - 0 ENSG00000185088.13 protein_coding RPS27L 1 OTTHUMG00000155301.6 +24674 chr15 HAVANA gene 63189469 63267782 5200.0 + 0 ENSG00000166128.12 protein_coding RAB8B 2 OTTHUMG00000132862.3 +24675 chr15 HAVANA gene 63276018 63309126 5494.0 + 0 ENSG00000138613.13 protein_coding APH1B 1 OTTHUMG00000132863.4 +24676 chr15 HAVANA gene 63321378 63382161 7313.0 - 0 ENSG00000074410.13 protein_coding CA12 2 OTTHUMG00000132881.2 +24677 chr15 HAVANA gene 63390136 63438320 2230.0 + 0 ENSG00000259459.5 lincRNA LINC02568 2 OTTHUMG00000172301.2 +24678 chr15 HAVANA gene 63456294 63469351 615.0 - 0 ENSG00000259268.1 lincRNA AC007950.1 2 OTTHUMG00000172302.1 +24679 chr15 HAVANA gene 63500737 63503083 2347.0 - 0 ENSG00000276651.1 lincRNA AC007950.2 2 OTTHUMG00000173093.1 +24680 chr15 HAVANA gene 63504511 63594640 7764.0 + 0 ENSG00000140455.16 protein_coding USP3 1 OTTHUMG00000172309.3 +24681 chr15 HAVANA gene 63544247 63601589 3624.0 - 0 ENSG00000259248.6 antisense USP3-AS1 2 OTTHUMG00000172432.3 +24682 chr15 HAVANA gene 63597353 63602428 3614.0 + 0 ENSG00000197361.7 protein_coding FBXL22 2 OTTHUMG00000132905.6 +24683 chr15 HAVANA gene 63675146 63713758 580.0 + 0 ENSG00000259589.2 antisense AC073167.1 2 OTTHUMG00000172434.2 +24684 chr15 HAVANA gene 63608618 63833942 17053.0 - 0 ENSG00000103657.13 protein_coding HERC1 1 OTTHUMG00000172433.5 +24685 chr15 ENSEMBL gene 63870930 63871019 90.0 - 0 ENSG00000199156.1 miRNA MIR422A 3 +24686 chr15 HAVANA gene 63890030 63890317 288.0 + 0 ENSG00000275785.1 unprocessed_pseudogene AC015914.2 2 OTTHUMG00000187864.1 +24687 chr15 HAVANA gene 63928274 63935953 1072.0 + 0 ENSG00000259351.1 antisense AC015914.1 2 OTTHUMG00000172435.1 +24688 chr15 HAVANA gene 63907036 64072033 13612.0 - 0 ENSG00000035664.11 protein_coding DAPK2 2 OTTHUMG00000132947.5 +24689 chr15 HAVANA gene 64072559 64094018 2427.0 - 0 ENSG00000166797.10 protein_coding CIAO2A 2 OTTHUMG00000132961.2 +24690 chr15 ENSEMBL gene 64111458 64111569 112.0 - 0 ENSG00000201071.1 misc_RNA RF00019 3 +24691 chr15 HAVANA gene 64094123 64146090 9780.0 + 0 ENSG00000028528.14 protein_coding SNX1 2 OTTHUMG00000172436.4 +24692 chr15 HAVANA gene 64151715 64157481 5767.0 + 0 ENSG00000157734.13 protein_coding SNX22 2 OTTHUMG00000132965.4 +24693 chr15 HAVANA gene 64155812 64163205 1911.0 - 0 ENSG00000166794.4 protein_coding PPIB 2 OTTHUMG00000133018.2 +24694 chr15 ENSEMBL gene 64342539 64342698 160.0 + 0 ENSG00000252774.1 snoRNA RF00554 3 +24695 chr15 HAVANA gene 64165517 64356259 9712.0 - 0 ENSG00000169118.17 protein_coding CSNK1G1 2 OTTHUMG00000133019.7 overlapping_locus +24696 chr15 HAVANA gene 64181180 64381440 3287.0 - 0 ENSG00000259316.11 protein_coding AC087632.1 1 OTTHUMG00000172470.9 overlapping_locus +24697 chr15 HAVANA gene 64364311 64387687 3734.0 - 0 ENSG00000166803.12 protein_coding PCLAF 1 OTTHUMG00000133017.4 overlapping_locus +24698 chr15 ENSEMBL gene 64445130 64445243 114.0 - 0 ENSG00000206781.1 misc_RNA RF00019 3 +24699 chr15 HAVANA gene 64387748 64455303 3135.0 + 0 ENSG00000103671.9 protein_coding TRIP4 2 OTTHUMG00000133033.3 +24700 chr15 HAVANA gene 64470253 64471364 391.0 + 0 ENSG00000259682.1 sense_intronic AC091231.1 2 OTTHUMG00000172472.1 overlapping_locus +24701 chr15 HAVANA gene 64528667 64529671 1005.0 - 0 ENSG00000248415.1 processed_pseudogene GAPDHP61 1 OTTHUMG00000160045.1 pseudo_consens +24702 chr15 HAVANA gene 64592979 64593326 348.0 + 0 ENSG00000243403.1 processed_pseudogene AC090543.2 2 OTTHUMG00000157969.1 overlapping_locus +24703 chr15 HAVANA gene 64631109 64631914 485.0 - 0 ENSG00000239465.1 processed_pseudogene AC090543.1 1 OTTHUMG00000157972.1 pseudo_consens +24704 chr15 ENSEMBL gene 64652888 64652989 102.0 + 0 ENSG00000207223.1 misc_RNA RF00019 3 +24705 chr15 ENSEMBL gene 64671263 64671369 107.0 + 0 ENSG00000207162.1 snRNA RNU6-549P 3 +24706 chr15 HAVANA gene 64460742 64686068 12112.0 + 0 ENSG00000180357.9 protein_coding ZNF609 2 OTTHUMG00000172370.6 ncRNA_host,overlapping_locus +24707 chr15 HAVANA gene 64695041 64695594 554.0 + 0 ENSG00000265967.1 antisense AC100830.3 2 OTTHUMG00000178466.1 +24708 chr15 HAVANA gene 64696622 64696861 240.0 + 0 ENSG00000264937.1 antisense AC100830.2 2 OTTHUMG00000178467.1 +24709 chr15 HAVANA gene 64687573 64703281 7671.0 - 0 ENSG00000180304.14 protein_coding OAZ2 1 OTTHUMG00000172473.4 +24710 chr15 HAVANA gene 64701248 64719602 1609.0 + 0 ENSG00000259635.1 antisense AC100830.1 2 OTTHUMG00000172475.1 +24711 chr15 ENSEMBL gene 64762387 64762515 129.0 - 0 ENSG00000221033.1 miRNA MIR1272 3 +24712 chr15 HAVANA gene 64739892 64775587 2101.0 - 0 ENSG00000166831.8 protein_coding RBPMS2 2 OTTHUMG00000172423.2 ncRNA_host +24713 chr15 HAVANA gene 64815632 64825668 4656.0 - 0 ENSG00000140451.12 protein_coding PIF1 2 OTTHUMG00000132974.3 +24714 chr15 HAVANA gene 64841883 64868007 3726.0 + 0 ENSG00000241839.9 protein_coding PLEKHO2 2 OTTHUMG00000133050.3 overlapping_locus +24715 chr15 HAVANA gene 64841883 64930920 1277.0 + 0 ENSG00000249240.2 protein_coding AC069368.1 2 OTTHUMG00000161678.2 overlapping_locus +24716 chr15 HAVANA gene 64943240 64943672 433.0 - 0 ENSG00000275332.1 antisense AC103691.2 2 OTTHUMG00000188434.1 +24717 chr15 HAVANA gene 64950916 64951435 520.0 - 0 ENSG00000274383.1 antisense AC103691.1 2 OTTHUMG00000188435.1 +24718 chr15 HAVANA gene 64911902 64958700 5042.0 + 0 ENSG00000166839.16 protein_coding ANKDD1A 2 OTTHUMG00000133051.8 overlapping_locus +24719 chr15 HAVANA gene 64963021 64990310 3984.0 - 0 ENSG00000090487.10 protein_coding SPG21 1 OTTHUMG00000133098.6 +24720 chr15 HAVANA gene 65026088 65026676 589.0 + 0 ENSG00000270218.1 processed_pseudogene AC013553.2 1 OTTHUMG00000184884.1 pseudo_consens +24721 chr15 HAVANA gene 65001512 65029639 3432.0 - 0 ENSG00000103707.9 protein_coding MTFMT 1 OTTHUMG00000172371.3 +24722 chr15 HAVANA gene 65049188 65049802 615.0 - 0 ENSG00000277351.1 antisense AC013553.3 2 OTTHUMG00000186924.1 +24723 chr15 HAVANA gene 65045370 65053396 940.0 + 0 ENSG00000186198.3 protein_coding SLC51B 2 OTTHUMG00000133116.1 +24724 chr15 HAVANA gene 65053337 65076690 2802.0 - 0 ENSG00000103710.10 protein_coding RASL12 2 OTTHUMG00000133115.3 +24725 chr15 HAVANA gene 65076816 65079939 3124.0 + 0 ENSG00000234438.4 protein_coding KBTBD13 2 OTTHUMG00000172424.4 +24726 chr15 HAVANA gene 65083042 65083663 622.0 - 0 ENSG00000278737.1 lincRNA AC013553.4 2 OTTHUMG00000186925.1 +24727 chr15 HAVANA gene 65105534 65105800 267.0 + 0 ENSG00000259258.1 processed_pseudogene AC013553.1 1 OTTHUMG00000172426.1 pseudo_consens +24728 chr15 HAVANA gene 65092770 65115197 8536.0 - 0 ENSG00000246922.8 protein_coding UBAP1L 2 OTTHUMG00000172425.2 +24729 chr15 HAVANA gene 65117379 65133836 3263.0 - 0 ENSG00000090470.14 protein_coding PDCD7 1 OTTHUMG00000133117.4 +24730 chr15 HAVANA gene 65148219 65185342 5461.0 - 0 ENSG00000166855.9 protein_coding CLPX 1 OTTHUMG00000133139.4 +24731 chr15 HAVANA gene 65194758 65211488 5695.0 - 0 ENSG00000138615.5 protein_coding CILP 2 OTTHUMG00000133140.2 +24732 chr15 HAVANA gene 65226472 65226697 226.0 - 0 ENSG00000279268.1 TEC AC068213.1 2 OTTHUMG00000173058.1 +24733 chr15 ENSEMBL gene 65229861 65229967 107.0 + 0 ENSG00000201709.1 snRNA RNU6-686P 3 +24734 chr15 ENSEMBL gene 65285461 65285591 131.0 - 0 ENSG00000206903.1 snoRNA SNORA24B 3 +24735 chr15 ENSEMBL gene 65296051 65296166 116.0 + 0 ENSG00000199568.1 snRNA RNU5A-1 3 +24736 chr15 HAVANA gene 65234460 65300618 3715.0 - 0 ENSG00000138617.15 protein_coding PARP16 1 OTTHUMG00000133138.6 ncRNA_host +24737 chr15 HAVANA gene 65301922 65302311 390.0 + 0 ENSG00000259346.2 processed_pseudogene AC105129.2 1 OTTHUMG00000172427.2 pseudo_consens +24738 chr15 ENSEMBL gene 65304677 65304792 116.0 + 0 ENSG00000200156.1 snRNA RNU5B-1 3 +24739 chr15 HAVANA gene 65327127 65378040 5552.0 - 0 ENSG00000174498.13 protein_coding IGDCC3 1 OTTHUMG00000133137.3 +24740 chr15 HAVANA gene 65381464 65423072 7764.0 - 0 ENSG00000103742.11 protein_coding IGDCC4 1 OTTHUMG00000133136.4 +24741 chr15 HAVANA gene 65458574 65459534 485.0 + 0 ENSG00000270690.1 processed_pseudogene AC105129.3 1 OTTHUMG00000184887.1 pseudo_consens +24742 chr15 HAVANA gene 65475318 65475614 297.0 - 0 ENSG00000259232.2 processed_pseudogene AC105129.1 2 OTTHUMG00000172428.2 overlapping_locus +24743 chr15 ENSEMBL gene 65502741 65502836 96.0 + 0 ENSG00000252217.1 misc_RNA RF00019 3 +24744 chr15 HAVANA gene 65442463 65517704 10211.0 - 0 ENSG00000074603.18 protein_coding DPP8 1 OTTHUMG00000133150.5 overlapping_locus +24745 chr15 ENSEMBL gene 65553081 65553187 107.0 - 0 ENSG00000207449.1 snRNA RNU6-19P 3 +24746 chr15 HAVANA gene 65530418 65578352 7097.0 + 0 ENSG00000074696.12 protein_coding HACD3 1 OTTHUMG00000172658.9 +24747 chr15 HAVANA gene 65578753 65611289 4210.0 - 0 ENSG00000138614.14 protein_coding INTS14 1 OTTHUMG00000133159.11 +24748 chr15 HAVANA gene 65655620 65656085 466.0 - 0 ENSG00000275638.1 antisense AC011939.3 2 OTTHUMG00000186934.1 +24749 chr15 HAVANA gene 65611366 65660995 9084.0 + 0 ENSG00000074621.13 protein_coding SLC24A1 1 OTTHUMG00000167960.5 +24750 chr15 ENSEMBL gene 65696833 65696936 104.0 - 0 ENSG00000238311.1 snoRNA SNORD13E 3 +24751 chr15 ENSEMBL gene 65719246 65719332 87.0 - 0 ENSG00000264737.1 miRNA MIR4511 3 +24752 chr15 HAVANA gene 65766460 65767398 428.0 - 0 ENSG00000261544.1 sense_intronic AC011939.2 2 OTTHUMG00000172636.1 overlapping_locus +24753 chr15 HAVANA gene 65771176 65772139 964.0 - 0 ENSG00000259924.1 processed_pseudogene AC011939.1 1 OTTHUMG00000172642.1 pseudo_consens,overlapping_locus +24754 chr15 HAVANA gene 65658046 65792293 10623.0 - 0 ENSG00000174485.15 protein_coding DENND4A 1 OTTHUMG00000172635.6 ncRNA_host,overlapping_locus +24755 chr15 HAVANA gene 65816302 65817481 879.0 - 0 ENSG00000249271.2 processed_pseudogene HNRNPA1P44 1 OTTHUMG00000172813.2 pseudo_consens +24756 chr15 ENSEMBL gene 65843484 65843558 75.0 + 0 ENSG00000283249.1 snRNA RF00026 3 +24757 chr15 HAVANA gene 65726054 65891991 5682.0 + 0 ENSG00000103769.9 protein_coding RAB11A 1 OTTHUMG00000133162.7 ncRNA_host +24758 chr15 ENSEMBL gene 66040233 66040332 100.0 + 0 ENSG00000263512.1 miRNA MIR4311 3 +24759 chr15 HAVANA gene 65895079 66253747 9828.0 - 0 ENSG00000157890.17 protein_coding MEGF11 2 OTTHUMG00000133175.5 +24760 chr15 HAVANA gene 66278498 66293357 578.0 - 0 ENSG00000261318.1 antisense AC055855.2 2 OTTHUMG00000172825.1 +24761 chr15 HAVANA gene 66314914 66331703 500.0 - 0 ENSG00000260773.1 antisense AC055855.1 2 OTTHUMG00000172826.1 +24762 chr15 HAVANA gene 66293217 66333898 5436.0 + 0 ENSG00000166938.12 protein_coding DIS3L 1 OTTHUMG00000133181.9 +24763 chr15 ENSEMBL gene 66347207 66347342 136.0 - 0 ENSG00000252712.1 scaRNA SCARNA14 3 +24764 chr15 ENSEMBL gene 66348276 66348375 100.0 + 0 ENSG00000223271.1 misc_RNA RF00019 3 +24765 chr15 HAVANA gene 66379337 66379915 579.0 - 0 ENSG00000240821.1 processed_pseudogene RPL9P25 1 OTTHUMG00000157975.1 pseudo_consens,overlapping_locus +24766 chr15 HAVANA gene 66336206 66386746 2755.0 - 0 ENSG00000075131.9 protein_coding TIPIN 2 OTTHUMG00000133188.3 ncRNA_host,overlapping_locus +24767 chr15 HAVANA gene 66414933 66415198 266.0 - 0 ENSG00000261102.2 processed_pseudogene ATP5MFP6 1 OTTHUMG00000172827.2 pseudo_consens +24768 chr15 HAVANA gene 66446455 66446777 323.0 - 0 ENSG00000243404.2 processed_pseudogene RPL35AP32 1 OTTHUMG00000157977.2 pseudo_consens +24769 chr15 HAVANA gene 66488658 66492109 2168.0 - 0 ENSG00000261351.2 antisense AC116913.1 2 OTTHUMG00000172828.2 overlapping_locus +24770 chr15 HAVANA gene 66386817 66492312 3759.0 + 0 ENSG00000169032.9 protein_coding MAP2K1 1 OTTHUMG00000133196.5 +24771 chr15 ENSEMBL gene 66496958 66497034 77.0 - 0 ENSG00000266589.1 miRNA MIR4512 3 +24772 chr15 HAVANA gene 66490135 66497813 2509.0 - 0 ENSG00000174446.12 protein_coding SNAPC5 1 OTTHUMG00000133195.4 ncRNA_host,overlapping_locus +24773 chr15 ENSEMBL gene 66501250 66501318 69.0 - 0 ENSG00000199574.1 snoRNA SNORD18C 3 +24774 chr15 ENSEMBL gene 66502019 66502089 71.0 - 0 ENSG00000280554.1 snoRNA RF01159 3 +24775 chr15 ENSEMBL gene 66502020 66502091 72.0 - 0 ENSG00000202529.1 snoRNA SNORD18B 3 +24776 chr15 ENSEMBL gene 66502812 66502910 99.0 - 0 ENSG00000199673.1 snoRNA SNORD16 3 +24777 chr15 ENSEMBL gene 66503243 66503314 72.0 - 0 ENSG00000200623.1 snoRNA SNORD18A 3 +24778 chr15 HAVANA gene 66498015 66524532 5637.0 - 0 ENSG00000174444.14 protein_coding RPL4 1 OTTHUMG00000133193.4 ncRNA_host +24779 chr15 HAVANA gene 66504959 66550128 4849.0 + 0 ENSG00000174442.11 protein_coding ZWILCH 2 OTTHUMG00000133194.7 +24780 chr15 HAVANA gene 66547179 66565979 3518.0 - 0 ENSG00000188501.11 protein_coding LCTL 2 OTTHUMG00000133207.3 +24781 chr15 HAVANA gene 66582190 66685794 833.0 + 0 ENSG00000259471.1 lincRNA LINC01169 2 OTTHUMG00000172242.1 +24782 chr15 HAVANA gene 66740445 66741151 707.0 + 0 ENSG00000274995.1 sense_intronic AC013564.1 2 OTTHUMG00000186938.1 overlapping_locus +24783 chr15 HAVANA gene 66702228 66782848 8563.0 + 0 ENSG00000137834.14 protein_coding SMAD6 2 OTTHUMG00000133218.6 overlapping_locus +24784 chr15 HAVANA gene 66808404 66810560 2157.0 + 0 ENSG00000270490.1 processed_pseudogene AC110048.1 1 OTTHUMG00000184890.1 pseudo_consens +24785 chr15 HAVANA gene 66860303 66867023 6721.0 + 0 ENSG00000277152.1 lincRNA AC110048.2 2 OTTHUMG00000186940.1 +24786 chr15 HAVANA gene 66919811 66931755 423.0 + 0 ENSG00000259437.1 lincRNA AC093334.1 2 OTTHUMG00000172296.1 +24787 chr15 HAVANA gene 66931537 66956518 719.0 - 0 ENSG00000259289.2 lincRNA LINC02206 2 OTTHUMG00000172297.2 +24788 chr15 HAVANA gene 67000814 67001085 272.0 - 0 ENSG00000259246.4 processed_pseudogene HMGN2P47 2 OTTHUMG00000172244.5 overlapping_locus +24789 chr15 HAVANA gene 66984108 67065268 3535.0 - 0 ENSG00000259347.6 antisense AC087482.1 2 OTTHUMG00000172243.3 overlapping_locus +24790 chr15 HAVANA gene 67142734 67146939 472.0 - 0 ENSG00000259202.1 antisense AC012568.1 1 OTTHUMG00000172245.1 +24791 chr15 HAVANA gene 67063763 67195195 9113.0 + 0 ENSG00000166949.15 protein_coding SMAD3 1 OTTHUMG00000133230.5 +24792 chr15 HAVANA gene 67232446 67232837 392.0 + 0 ENSG00000242634.1 processed_pseudogene RPS24P16 1 OTTHUMG00000157982.1 pseudo_consens +24793 chr15 HAVANA gene 67201033 67255195 3833.0 - 0 ENSG00000103591.12 protein_coding AAGAB 1 OTTHUMG00000172246.3 +24794 chr15 HAVANA gene 67254800 67502260 7108.0 + 0 ENSG00000103599.19 protein_coding IQCH 1 OTTHUMG00000133231.6 +24795 chr15 HAVANA gene 67403619 67521844 6732.0 - 0 ENSG00000259673.5 lincRNA IQCH-AS1 2 OTTHUMG00000172247.1 +24796 chr15 HAVANA gene 67521068 67530143 4811.0 + 0 ENSG00000189227.5 protein_coding C15orf61 1 OTTHUMG00000172248.4 +24797 chr15 HAVANA gene 67541072 67542604 1533.0 - 0 ENSG00000270964.1 lincRNA AC016355.1 2 OTTHUMG00000185153.1 +24798 chr15 HAVANA gene 67627852 67629135 966.0 + 0 ENSG00000259512.3 processed_pseudogene HNRNPA1P5 1 OTTHUMG00000172249.3 pseudo_consens,overlapping_locus +24799 chr15 HAVANA gene 67542709 67807123 5031.0 + 0 ENSG00000137764.19 protein_coding MAP2K5 1 OTTHUMG00000133264.6 overlapping_locus +24800 chr15 HAVANA gene 67819704 67834561 4479.0 + 0 ENSG00000188779.10 protein_coding SKOR1 2 OTTHUMG00000170878.1 overlapping_locus +24801 chr15 HAVANA gene 67834310 67838879 1986.0 - 0 ENSG00000245719.1 lincRNA AC009292.1 2 OTTHUMG00000172251.1 +24802 chr15 ENSEMBL gene 67839939 67840045 107.0 - 0 ENSG00000206625.1 snRNA RNU6-1 3 +24803 chr15 HAVANA gene 67832725 67873866 401.0 + 0 ENSG00000259410.5 processed_transcript AC009292.2 2 OTTHUMG00000172250.2 overlapping_locus +24804 chr15 HAVANA gene 67974391 67974625 235.0 - 0 ENSG00000261702.2 processed_pseudogene AC022254.1 1 OTTHUMG00000172683.2 pseudo_consens +24805 chr15 HAVANA gene 67985059 67986288 534.0 + 0 ENSG00000260109.1 unprocessed_pseudogene AC135628.1 1 OTTHUMG00000172680.1 pseudo_consens +24806 chr15 HAVANA gene 68054179 68198603 10776.0 + 0 ENSG00000033800.13 protein_coding PIAS1 2 OTTHUMG00000172645.4 +24807 chr15 HAVANA gene 68190705 68206110 5038.0 - 0 ENSG00000129007.14 protein_coding CALML4 1 OTTHUMG00000133287.7 overlapping_locus +24808 chr15 HAVANA gene 68184032 68229718 7135.0 - 0 ENSG00000260007.3 protein_coding AC107871.1 2 OTTHUMG00000172656.4 overlapping_locus +24809 chr15 HAVANA gene 68254549 68254939 391.0 + 0 ENSG00000260602.2 processed_pseudogene HMGN2P40 2 OTTHUMG00000172681.2 +24810 chr15 HAVANA gene 68206992 68257211 7345.0 - 0 ENSG00000128973.12 protein_coding CLN6 2 OTTHUMG00000133286.6 overlapping_locus +24811 chr15 HAVANA gene 68267792 68277994 736.0 - 0 ENSG00000260657.2 lincRNA AC107871.2 2 OTTHUMG00000172682.2 +24812 chr15 HAVANA gene 68277803 68295865 7569.0 + 0 ENSG00000169018.5 protein_coding FEM1B 1 OTTHUMG00000133285.4 +24813 chr15 HAVANA gene 68296533 68432162 10864.0 - 0 ENSG00000137809.16 protein_coding ITGA11 2 OTTHUMG00000172657.3 +24814 chr15 HAVANA gene 68578969 68727806 3998.0 + 0 ENSG00000103647.12 protein_coding CORO2B 2 OTTHUMG00000133288.3 +24815 chr15 HAVANA gene 68749501 68750691 889.0 + 0 ENSG00000271232.1 processed_pseudogene CARSP1 1 OTTHUMG00000184898.1 pseudo_consens +24816 chr15 ENSEMBL gene 68801850 68801925 76.0 - 0 ENSG00000265195.1 miRNA MIR4312 3 +24817 chr15 HAVANA gene 68778535 68820897 7544.0 - 0 ENSG00000140350.15 protein_coding ANP32A 1 OTTHUMG00000154502.2 ncRNA_host +24818 chr15 HAVANA gene 68833830 68834749 920.0 + 0 ENSG00000259286.3 processed_pseudogene AC087639.1 1 OTTHUMG00000172052.3 pseudo_consens,overlapping_locus +24819 chr15 HAVANA gene 68880663 68928941 3555.0 - 0 ENSG00000285919.1 antisense AC087639.2 2 OTTHUMG00000192778.1 +24820 chr15 HAVANA gene 68818221 68946811 1588.0 + 0 ENSG00000258484.3 protein_coding SPESP1 2 OTTHUMG00000133321.3 overlapping_locus +24821 chr15 HAVANA gene 69022230 69024176 1947.0 + 0 ENSG00000273851.1 transcribed_processed_pseudogene AC027088.4 1 OTTHUMG00000188449.1 pseudo_consens,overlapping_locus +24822 chr15 HAVANA gene 68930504 69028889 1117.0 + 0 ENSG00000137808.12 processed_transcript AC027088.1 2 OTTHUMG00000171448.2 overlapping_locus +24823 chr15 HAVANA gene 69037549 69043565 872.0 - 0 ENSG00000259265.1 antisense AC027088.3 2 OTTHUMG00000172081.1 +24824 chr15 HAVANA gene 68930525 69062743 12511.0 + 0 ENSG00000255346.9 protein_coding NOX5 1 OTTHUMG00000133320.4 overlapping_locus +24825 chr15 HAVANA gene 69072926 69095820 3576.0 + 0 ENSG00000212766.9 lincRNA EWSAT1 2 OTTHUMG00000133319.4 overlapping_locus +24826 chr15 HAVANA gene 69080879 69099987 916.0 + 0 ENSG00000259222.2 lincRNA AC027088.2 2 OTTHUMG00000172082.2 overlapping_locus +24827 chr15 HAVANA gene 69160584 69272217 6630.0 + 0 ENSG00000138604.9 protein_coding GLCE 2 OTTHUMG00000172084.4 +24828 chr15 HAVANA gene 69278675 69295322 883.0 + 0 ENSG00000259504.2 lincRNA AC026992.1 2 OTTHUMG00000172085.2 +24829 chr15 HAVANA gene 69278328 69298763 4820.0 - 0 ENSG00000261634.3 antisense AC026992.2 2 OTTHUMG00000173056.2 +24830 chr15 HAVANA gene 69391192 69392149 694.0 + 0 ENSG00000259645.1 sense_intronic AC027237.4 2 OTTHUMG00000172086.1 overlapping_locus +24831 chr15 ENSEMBL gene 69406441 69406552 112.0 + 0 ENSG00000207395.1 misc_RNA RF00019 3 +24832 chr15 HAVANA gene 69298947 69407780 6224.0 + 0 ENSG00000137819.13 protein_coding PAQR5 2 OTTHUMG00000133322.5 ncRNA_host,overlapping_locus +24833 chr15 HAVANA gene 69396904 69415029 2265.0 - 0 ENSG00000259426.5 antisense AC027237.3 2 OTTHUMG00000172061.2 +24834 chr15 HAVANA gene 69434466 69435120 655.0 - 0 ENSG00000259191.2 processed_pseudogene AC027237.1 2 OTTHUMG00000133359.4 +24835 chr15 HAVANA gene 69414246 69448427 6377.0 + 0 ENSG00000137807.15 protein_coding KIF23 1 OTTHUMG00000172062.8 +24836 chr15 HAVANA gene 69452784 69456194 3271.0 + 0 ENSG00000137818.11 protein_coding RPLP1 2 OTTHUMG00000172087.2 +24837 chr15 ENSEMBL gene 69457941 69458149 209.0 - 0 ENSG00000207119.2 snoRNA RF00012 3 +24838 chr15 HAVANA gene 69458522 69461806 391.0 - 0 ENSG00000259215.1 lincRNA AC027237.2 2 OTTHUMG00000172088.1 +24839 chr15 HAVANA gene 69564724 69565790 890.0 - 0 ENSG00000259457.1 lincRNA AC100826.1 2 OTTHUMG00000172094.19 +24840 chr15 HAVANA gene 69803316 69804046 731.0 - 0 ENSG00000259496.2 processed_pseudogene AC021818.2 1 OTTHUMG00000172100.2 pseudo_consens +24841 chr15 HAVANA gene 69820756 69835111 1257.0 - 0 ENSG00000259309.2 lincRNA AC021818.1 2 OTTHUMG00000172101.2 +24842 chr15 HAVANA gene 69463026 69843120 18461.0 + 0 ENSG00000245750.8 lincRNA DRAIC 2 OTTHUMG00000172098.18 +24843 chr15 ENSEMBL gene 70079372 70079468 97.0 - 0 ENSG00000207965.1 miRNA MIR629 3 +24844 chr15 HAVANA gene 70047790 70098176 12634.0 - 0 ENSG00000140332.15 protein_coding TLE3 2 OTTHUMG00000172121.4 ncRNA_host +24845 chr15 ENSEMBL gene 70193236 70193341 106.0 + 0 ENSG00000200216.2 snRNA RNU6-745P 3 +24846 chr15 HAVANA gene 70195638 70198509 569.0 - 0 ENSG00000259252.1 lincRNA AC026583.1 2 OTTHUMG00000172123.1 +24847 chr15 HAVANA gene 70321576 70326742 527.0 + 0 ENSG00000259503.1 lincRNA AC048383.1 2 OTTHUMG00000172124.1 +24848 chr15 HAVANA gene 70503907 70505928 239.0 - 0 ENSG00000259473.1 lincRNA LINC02205 2 OTTHUMG00000172125.1 +24849 chr15 HAVANA gene 70570958 70586606 3206.0 - 0 ENSG00000280639.1 lincRNA LINC02204 2 OTTHUMG00000189720.1 +24850 chr15 HAVANA gene 70602124 70602516 393.0 + 0 ENSG00000259227.2 processed_pseudogene AC087699.1 2 OTTHUMG00000172174.2 +24851 chr15 HAVANA gene 70615547 70616567 1021.0 + 0 ENSG00000281264.1 lincRNA SALRNA3 2 OTTHUMG00000189721.2 +24852 chr15 HAVANA gene 70635249 70637314 2066.0 + 0 ENSG00000280515.1 lincRNA SALRNA2 2 OTTHUMG00000189722.1 +24853 chr15 HAVANA gene 70748932 70754177 472.0 + 0 ENSG00000259532.1 lincRNA AC009269.2 2 OTTHUMG00000172175.1 +24854 chr15 HAVANA gene 70758269 70758856 588.0 - 0 ENSG00000274297.1 sense_intronic AC009269.5 2 OTTHUMG00000186947.1 overlapping_locus +24855 chr15 HAVANA gene 70654554 70763593 11031.0 - 0 ENSG00000137831.14 protein_coding UACA 2 OTTHUMG00000133363.4 overlapping_locus +24856 chr15 HAVANA gene 70768011 70778868 440.0 - 0 ENSG00000259624.1 antisense AC009269.3 2 OTTHUMG00000172176.1 +24857 chr15 HAVANA gene 70791013 70791486 474.0 + 0 ENSG00000259452.2 processed_pseudogene AC009269.1 1 OTTHUMG00000172177.2 pseudo_consens +24858 chr15 HAVANA gene 70796597 70802688 946.0 - 0 ENSG00000235420.7 transcribed_processed_pseudogene RPL29P30 1 OTTHUMG00000157984.2 pseudo_consens +24859 chr15 HAVANA gene 70848883 70849770 755.0 - 0 ENSG00000259744.1 sense_intronic AC009269.4 2 OTTHUMG00000172181.1 overlapping_locus +24860 chr15 HAVANA gene 70829130 70854159 5554.0 - 0 ENSG00000166173.10 protein_coding LARP6 1 OTTHUMG00000172179.5 overlapping_locus +24861 chr15 HAVANA gene 70858714 70860162 1449.0 + 0 ENSG00000259470.2 processed_pseudogene KRT8P9 1 OTTHUMG00000172183.2 pseudo_consens,overlapping_locus +24862 chr15 HAVANA gene 70881342 70892785 2399.0 - 0 ENSG00000129028.8 protein_coding THAP10 2 OTTHUMG00000133388.2 +24863 chr15 HAVANA gene 70853239 71053657 9991.0 + 0 ENSG00000137821.11 protein_coding LRRC49 1 OTTHUMG00000172182.5 overlapping_locus +24864 chr15 HAVANA gene 71063101 71063989 889.0 - 0 ENSG00000242276.2 processed_pseudogene RPL5P3 1 OTTHUMG00000157991.2 pseudo_consens +24865 chr15 HAVANA gene 71110244 71115500 2855.0 - 0 ENSG00000225362.9 protein_coding CT62 1 OTTHUMG00000172836.4 +24866 chr15 HAVANA gene 71164770 71165415 646.0 - 0 ENSG00000259781.1 processed_pseudogene HMGB1P6 1 OTTHUMG00000172839.1 pseudo_consens,overlapping_locus +24867 chr15 HAVANA gene 71147650 71189042 3015.0 - 0 ENSG00000259964.6 antisense THSD4-AS1 2 OTTHUMG00000172838.2 overlapping_locus +24868 chr15 HAVANA gene 71341158 71341712 555.0 - 0 ENSG00000212664.5 processed_pseudogene AC064799.1 2 OTTHUMG00000157993.1 +24869 chr15 HAVANA gene 71332120 71352460 1237.0 + 0 ENSG00000260586.2 sense_intronic AC064799.2 2 OTTHUMG00000172840.2 overlapping_locus +24870 chr15 HAVANA gene 71547280 71549832 585.0 - 0 ENSG00000278408.1 antisense AC108861.1 2 OTTHUMG00000186948.1 +24871 chr15 HAVANA gene 71096952 71783383 15837.0 + 0 ENSG00000187720.14 protein_coding THSD4 2 OTTHUMG00000133389.7 overlapping_locus +24872 chr15 HAVANA gene 71792638 71818259 3244.0 + 0 ENSG00000278570.4 protein_coding NR2E3 2 OTTHUMG00000172841.5 +24873 chr15 HAVANA gene 71818396 71823384 896.0 + 0 ENSG00000260037.5 antisense AC104938.1 2 OTTHUMG00000172843.1 +24874 chr15 ENSEMBL gene 71858570 71858686 117.0 + 0 ENSG00000200873.1 rRNA_pseudogene RNA5SP399 3 +24875 chr15 HAVANA gene 71972206 72040265 781.0 + 0 ENSG00000261632.1 antisense AC022872.1 2 OTTHUMG00000172844.1 +24876 chr15 HAVANA gene 72041194 72041653 460.0 - 0 ENSG00000260576.1 processed_pseudogene EIF5A2P1 1 OTTHUMG00000172845.1 pseudo_consens,overlapping_locus +24877 chr15 ENSEMBL gene 72045183 72045367 185.0 + 0 ENSG00000222094.1 snRNA RNU2-65P 3 +24878 chr15 HAVANA gene 71822289 72118577 20253.0 - 0 ENSG00000066933.15 protein_coding MYO9A 1 OTTHUMG00000133440.6 overlapping_locus +24879 chr15 HAVANA gene 72134641 72135436 796.0 + 0 ENSG00000243568.2 processed_pseudogene AC020779.1 1 OTTHUMG00000158016.2 pseudo_consens,overlapping_locus +24880 chr15 HAVANA gene 72114258 72143688 5007.0 + 0 ENSG00000166192.14 protein_coding SENP8 2 OTTHUMG00000133441.5 overlapping_locus +24881 chr15 HAVANA gene 72140504 72155459 393.0 - 0 ENSG00000260173.1 antisense AC020779.2 2 OTTHUMG00000172861.1 +24882 chr15 HAVANA gene 72159807 72197785 4987.0 - 0 ENSG00000175318.11 protein_coding GRAMD2A 1 OTTHUMG00000172708.3 +24883 chr15 HAVANA gene 72199029 72231822 8571.0 - 0 ENSG00000067225.17 protein_coding PKM 1 OTTHUMG00000172709.5 +24884 chr15 HAVANA gene 72241181 72272999 7696.0 - 0 ENSG00000137817.16 protein_coding PARP6 2 OTTHUMG00000133443.4 overlapping_locus +24885 chr15 HAVANA gene 72266746 72319946 1902.0 - 0 ENSG00000273025.1 protein_coding AC009690.3 2 OTTHUMG00000133444.3 overlapping_locus +24886 chr15 HAVANA gene 72284727 72320129 3588.0 - 0 ENSG00000140488.15 protein_coding CELF6 1 OTTHUMG00000186423.2 overlapping_locus +24887 chr15 HAVANA gene 72278867 72351794 3148.0 + 0 ENSG00000261460.1 antisense AC009690.2 2 OTTHUMG00000177179.1 +24888 chr15 HAVANA gene 72284727 72375981 4374.0 - 0 ENSG00000260729.1 protein_coding AC009690.1 2 OTTHUMG00000172710.3 overlapping_locus +24889 chr15 HAVANA gene 72340919 72376476 12611.0 - 0 ENSG00000213614.9 protein_coding HEXA 1 OTTHUMG00000133445.5 overlapping_locus +24890 chr15 HAVANA gene 72376113 72378788 2676.0 + 0 ENSG00000260339.1 antisense HEXA-AS1 2 OTTHUMG00000177184.1 +24891 chr15 HAVANA gene 72379215 72379710 496.0 - 0 ENSG00000243007.1 processed_pseudogene RPL12P35 1 OTTHUMG00000158018.1 pseudo_consens +24892 chr15 HAVANA gene 72398273 72408029 1012.0 + 0 ENSG00000187806.8 protein_coding TMEM202 1 OTTHUMG00000172716.4 +24893 chr15 HAVANA gene 72450657 72451474 818.0 + 0 ENSG00000271072.1 processed_pseudogene PHBP20 1 OTTHUMG00000184900.1 pseudo_consens +24894 chr15 HAVANA gene 72465128 72466262 1135.0 - 0 ENSG00000261187.1 lincRNA AC079322.1 2 OTTHUMG00000173048.1 overlapping_locus +24895 chr15 HAVANA gene 72407778 72475168 2713.0 - 0 ENSG00000261423.1 lincRNA TMEM202-AS1 2 OTTHUMG00000173055.1 overlapping_locus +24896 chr15 ENSEMBL gene 72587217 72587313 97.0 + 0 ENSG00000283798.1 miRNA MIR630 3 +24897 chr15 HAVANA gene 72589691 72591845 2155.0 + 0 ENSG00000260534.1 sense_overlapping AC100827.3 2 OTTHUMG00000176421.1 overlapping_locus +24898 chr15 HAVANA gene 72474326 72602985 22880.0 + 0 ENSG00000166233.14 protein_coding ARIH1 2 OTTHUMG00000133474.4 ncRNA_host,overlapping_locus +24899 chr15 HAVANA gene 72604399 72605008 426.0 - 0 ENSG00000278313.1 unprocessed_pseudogene AC100827.5 2 OTTHUMG00000187865.1 +24900 chr15 HAVANA gene 72605183 72612326 1194.0 + 0 ENSG00000260144.1 unprocessed_pseudogene AC100827.2 2 OTTHUMG00000173095.1 +24901 chr15 HAVANA gene 72615810 72618250 2441.0 + 0 ENSG00000260672.1 lincRNA AC100827.4 2 OTTHUMG00000173097.1 +24902 chr15 HAVANA gene 72608481 72636919 594.0 - 0 ENSG00000259783.5 lincRNA LINC02259 2 OTTHUMG00000173096.2 +24903 chr15 HAVANA gene 72638821 72640125 382.0 + 0 ENSG00000259909.1 unprocessed_pseudogene AC100827.1 2 OTTHUMG00000173098.1 +24904 chr15 ENSEMBL gene 72664577 72664799 223.0 + 0 ENSG00000274350.1 misc_RNA RN7SL853P 3 +24905 chr15 HAVANA gene 72654738 72666394 2234.0 + 0 ENSG00000215186.6 protein_coding GOLGA6B 2 OTTHUMG00000133511.4 ncRNA_host +24906 chr15 HAVANA gene 72682266 72682904 316.0 - 0 ENSG00000261281.1 transcribed_processed_pseudogene AC009712.1 1 OTTHUMG00000173099.1 pseudo_consens,overlapping_locus +24907 chr15 HAVANA gene 72675782 72686149 1117.0 - 0 ENSG00000175202.4 protein_coding HIGD2B 2 OTTHUMG00000172776.3 overlapping_locus,retrogene +24908 chr15 HAVANA gene 72686179 72738476 4149.0 + 0 ENSG00000140463.13 protein_coding BBS4 2 OTTHUMG00000133510.5 +24909 chr15 HAVANA gene 72751369 72785846 5931.0 - 0 ENSG00000159322.17 protein_coding ADPGK 1 OTTHUMG00000172777.3 +24910 chr15 HAVANA gene 72782835 72798199 3138.0 + 0 ENSG00000260898.5 antisense ADPGK-AS1 2 OTTHUMG00000173100.1 +24911 chr15 HAVANA gene 72858354 72887128 738.0 + 0 ENSG00000285729.1 lincRNA AC103874.1 2 OTTHUMG00000192984.1 +24912 chr15 HAVANA gene 72899399 72900260 862.0 - 0 ENSG00000259259.1 processed_pseudogene NPM1P42 1 OTTHUMG00000172550.1 pseudo_consens +24913 chr15 HAVANA gene 73143236 73143518 283.0 - 0 ENSG00000259691.2 processed_pseudogene FKBP1AP2 1 OTTHUMG00000172551.2 pseudo_consens +24914 chr15 HAVANA gene 73161779 73162928 786.0 - 0 ENSG00000259440.2 processed_pseudogene NPM1P43 1 OTTHUMG00000172552.2 pseudo_consens +24915 chr15 HAVANA gene 73255334 73256109 531.0 - 0 ENSG00000259528.1 antisense AC068397.1 2 OTTHUMG00000172553.1 +24916 chr15 HAVANA gene 73051710 73305206 8117.0 + 0 ENSG00000067141.16 protein_coding NEO1 1 OTTHUMG00000133509.6 +24917 chr15 HAVANA gene 73335260 73342387 371.0 + 0 ENSG00000259650.1 antisense AC068397.2 2 OTTHUMG00000172548.1 +24918 chr15 HAVANA gene 73319859 73369264 7228.0 - 0 ENSG00000138622.3 protein_coding HCN4 2 OTTHUMG00000137563.2 +24919 chr15 HAVANA gene 73483196 73483943 748.0 - 0 ENSG00000259186.1 processed_pseudogene MRPS15P1 1 OTTHUMG00000172554.1 pseudo_consens +24920 chr15 HAVANA gene 73443158 73560014 927.0 + 0 ENSG00000183324.10 protein_coding REC114 2 OTTHUMG00000172549.1 +24921 chr15 HAVANA gene 73567012 73569294 2283.0 - 0 ENSG00000281183.1 sense_intronic NPTN-IT1 2 OTTHUMG00000189514.1 +24922 chr15 HAVANA gene 73560014 73634134 4032.0 - 0 ENSG00000156642.16 protein_coding NPTN 2 OTTHUMG00000137586.6 +24923 chr15 HAVANA gene 73683966 73714518 5542.0 + 0 ENSG00000103855.17 protein_coding CD276 1 OTTHUMG00000137585.8 +24924 chr15 HAVANA gene 73730048 73731711 1664.0 - 0 ENSG00000276807.1 lincRNA AC022188.1 2 OTTHUMG00000186950.1 +24925 chr15 HAVANA gene 73735431 73752747 6573.0 - 0 ENSG00000205363.5 protein_coding INSYN1 1 OTTHUMG00000172556.4 +24926 chr15 HAVANA gene 73752317 73770613 1575.0 + 0 ENSG00000260469.2 lincRNA INSYN1-AS1 2 OTTHUMG00000172684.2 +24927 chr15 HAVANA gene 73870950 73873366 484.0 - 0 ENSG00000260624.1 antisense AC018943.1 2 OTTHUMG00000172726.1 +24928 chr15 HAVANA gene 73873608 73889214 1226.0 + 0 ENSG00000167139.8 protein_coding TBC1D21 1 OTTHUMG00000137594.4 +24929 chr15 HAVANA gene 73908071 73928248 4221.0 - 0 ENSG00000261801.5 antisense LOXL1-AS1 2 OTTHUMG00000172711.4 +24930 chr15 HAVANA gene 73925989 73952137 3637.0 + 0 ENSG00000129038.15 protein_coding LOXL1 2 OTTHUMG00000137595.4 +24931 chr15 HAVANA gene 73978923 73994622 10461.0 - 0 ENSG00000067221.13 protein_coding STOML1 1 OTTHUMG00000137608.5 +24932 chr15 HAVANA gene 73994673 74047812 12657.0 + 0 ENSG00000140464.19 protein_coding PML 2 OTTHUMG00000137607.5 +24933 chr15 HAVANA gene 74062780 74063785 270.0 + 0 ENSG00000260096.1 unprocessed_pseudogene DNM1P33 2 OTTHUMG00000173034.1 +24934 chr15 ENSEMBL gene 74072454 74072676 223.0 - 0 ENSG00000278604.1 misc_RNA RN7SL429P 3 +24935 chr15 HAVANA gene 74069857 74082550 3505.0 - 0 ENSG00000159289.6 protein_coding GOLGA6A 2 OTTHUMG00000173035.1 ncRNA_host +24936 chr15 HAVANA gene 74097106 74098414 386.0 - 0 ENSG00000214702.6 unprocessed_pseudogene AC010931.1 2 OTTHUMG00000173052.1 +24937 chr15 HAVANA gene 74125915 74129278 3238.0 - 0 ENSG00000248540.2 lincRNA AC010931.2 1 OTTHUMG00000173053.1 +24938 chr15 HAVANA gene 74100311 74138540 6101.0 + 0 ENSG00000167178.15 protein_coding ISLR2 2 OTTHUMG00000137624.4 +24939 chr15 ENSEMBL gene 74162340 74162620 281.0 - 0 ENSG00000278348.1 misc_RNA RF00017 3 +24940 chr15 HAVANA gene 74173671 74176872 2671.0 + 0 ENSG00000129009.12 protein_coding ISLR 2 OTTHUMG00000137623.6 +24941 chr15 HAVANA gene 74152800 74179226 554.0 - 0 ENSG00000261543.1 antisense AC010931.3 2 OTTHUMG00000173054.1 ncRNA_host +24942 chr15 HAVANA gene 74179466 74212267 7690.0 - 0 ENSG00000137868.18 protein_coding STRA6 2 OTTHUMG00000138998.4 +24943 chr15 HAVANA gene 74303005 74304343 382.0 + 0 ENSG00000261384.1 sense_intronic AC023300.1 2 OTTHUMG00000172634.1 overlapping_locus +24944 chr15 HAVANA gene 74299503 74304527 5025.0 + 0 ENSG00000280309.1 TEC AC023300.3 2 OTTHUMG00000177186.1 overlapping_locus +24945 chr15 HAVANA gene 74311516 74319688 612.0 - 0 ENSG00000277749.1 antisense AC023300.2 2 OTTHUMG00000186951.1 +24946 chr15 HAVANA gene 74202705 74336472 7067.0 + 0 ENSG00000140481.14 protein_coding CCDC33 2 OTTHUMG00000172621.5 +24947 chr15 HAVANA gene 74350768 74364620 3702.0 + 0 ENSG00000260266.1 transcribed_processed_pseudogene PPIAP46 1 OTTHUMG00000172648.1 pseudo_consens +24948 chr15 HAVANA gene 74337759 74367740 3491.0 - 0 ENSG00000140459.17 protein_coding CYP11A1 1 OTTHUMG00000150716.5 +24949 chr15 HAVANA gene 74365435 74371211 4946.0 + 0 ENSG00000261821.2 antisense AC090826.1 2 OTTHUMG00000172649.2 +24950 chr15 HAVANA gene 74374678 74375511 834.0 + 0 ENSG00000274937.1 lincRNA AC090826.2 2 OTTHUMG00000186953.1 +24951 chr15 HAVANA gene 74379083 74390535 199.0 + 0 ENSG00000277718.1 lincRNA LINC02255 2 OTTHUMG00000186954.1 +24952 chr15 ENSEMBL gene 74411357 74411432 76.0 - 0 ENSG00000277391.1 miRNA MIR6881 3 +24953 chr15 HAVANA gene 74409289 74433958 3800.0 - 0 ENSG00000138623.10 protein_coding SEMA7A 2 OTTHUMG00000139000.5 ncRNA_host +24954 chr15 HAVANA gene 74445977 74461182 1885.0 - 0 ENSG00000138629.15 protein_coding UBL7 1 OTTHUMG00000139001.5 +24955 chr15 HAVANA gene 74461265 74481302 1710.0 + 0 ENSG00000247240.7 antisense UBL7-AS1 2 OTTHUMG00000172644.2 +24956 chr15 HAVANA gene 74478070 74490286 3385.0 - 0 ENSG00000260103.2 transcribed_processed_pseudogene AC012435.1 1 OTTHUMG00000172643.3 pseudo_consens +24957 chr15 ENSEMBL gene 74490959 74491028 70.0 - 0 ENSG00000212279.2 snoRNA RF00591 3 +24958 chr15 HAVANA gene 74489602 74516959 361.0 + 0 ENSG00000261775.1 lincRNA AC012435.2 2 OTTHUMG00000172650.1 +24959 chr15 HAVANA gene 74541177 74598131 6212.0 + 0 ENSG00000179361.17 protein_coding ARID3B 1 OTTHUMG00000141321.3 +24960 chr15 HAVANA gene 74598919 74599397 479.0 - 0 ENSG00000275527.1 lincRNA AC100835.2 2 OTTHUMG00000186955.1 +24961 chr15 HAVANA gene 74613194 74615596 498.0 - 0 ENSG00000260919.1 antisense AC100835.1 2 OTTHUMG00000172816.2 +24962 chr15 HAVANA gene 74598500 74645414 20443.0 + 0 ENSG00000179335.18 protein_coding CLK3 1 OTTHUMG00000141320.13 +24963 chr15 HAVANA gene 74630558 74696292 5103.0 - 0 ENSG00000179151.12 protein_coding EDC3 2 OTTHUMG00000142815.11 +24964 chr15 HAVANA gene 74719542 74725610 3435.0 - 0 ENSG00000140465.13 protein_coding CYP1A1 1 OTTHUMG00000142812.4 +24965 chr15 HAVANA gene 74748844 74756202 2728.0 + 0 ENSG00000140505.6 protein_coding CYP1A2 2 OTTHUMG00000172901.3 +24966 chr15 ENSEMBL gene 74788672 74788757 86.0 - 0 ENSG00000264386.1 miRNA MIR4513 3 +24967 chr15 HAVANA gene 74782057 74803198 4570.0 + 0 ENSG00000103653.16 protein_coding CSK 2 OTTHUMG00000142814.5 +24968 chr15 HAVANA gene 74812716 74825758 4108.0 + 0 ENSG00000140506.16 protein_coding LMAN1L 1 OTTHUMG00000142813.9 overlapping_locus +24969 chr15 HAVANA gene 74816223 74831795 6793.0 + 0 ENSG00000261606.5 processed_transcript AC091230.1 2 OTTHUMG00000172966.2 overlapping_locus +24970 chr15 HAVANA gene 74826547 74831802 2082.0 + 0 ENSG00000213578.5 protein_coding CPLX3 2 OTTHUMG00000142816.3 overlapping_locus +24971 chr15 ENSEMBL gene 74840642 74840707 66.0 - 0 ENSG00000275411.1 miRNA MIR6882 3 +24972 chr15 HAVANA gene 74836116 74843346 3516.0 - 0 ENSG00000140474.13 protein_coding ULK3 2 OTTHUMG00000173020.13 ncRNA_host +24973 chr15 HAVANA gene 74843730 74873365 5000.0 - 0 ENSG00000140497.16 protein_coding SCAMP2 1 OTTHUMG00000142817.5 +24974 chr15 HAVANA gene 74890005 74902219 9090.0 + 0 ENSG00000178802.17 protein_coding MPI 1 OTTHUMG00000142826.9 +24975 chr15 HAVANA gene 74899987 74907121 5258.0 - 0 ENSG00000178761.14 protein_coding FAM219B 2 OTTHUMG00000172715.6 +24976 chr15 HAVANA gene 74919791 74938168 1411.0 - 0 ENSG00000178741.11 protein_coding COX5A 1 OTTHUMG00000142825.3 +24977 chr15 HAVANA gene 74954416 74957464 3049.0 - 0 ENSG00000178718.6 protein_coding RPP25 2 OTTHUMG00000142822.2 +24978 chr15 HAVANA gene 74976240 74976573 334.0 - 0 ENSG00000261813.2 processed_pseudogene AC015720.2 1 OTTHUMG00000172712.2 pseudo_consens +24979 chr15 ENSEMBL gene 74983274 74983376 103.0 - 0 ENSG00000199580.1 misc_RNA RF00019 3 +24980 chr15 HAVANA gene 74957219 75021496 4873.0 + 0 ENSG00000198794.11 protein_coding SCAMP5 2 OTTHUMG00000172704.10 +24981 chr15 HAVANA gene 75022980 75023256 277.0 + 0 ENSG00000260483.2 processed_pseudogene AC015720.1 1 OTTHUMG00000172697.2 pseudo_consens +24982 chr15 HAVANA gene 75114261 75114868 608.0 + 0 ENSG00000260152.2 processed_pseudogene AC113208.1 1 OTTHUMG00000172818.2 pseudo_consens,overlapping_locus +24983 chr15 HAVANA gene 75023555 75117462 3781.0 + 0 ENSG00000138621.11 protein_coding PPCDC 1 OTTHUMG00000142824.5 overlapping_locus +24984 chr15 ENSEMBL gene 75120265 75120562 298.0 - 0 ENSG00000203411.3 misc_RNA RF00017 3 +24985 chr15 ENSEMBL gene 75121536 75121666 131.0 - 0 ENSG00000252722.1 scaRNA RF00601 3 +24986 chr15 HAVANA gene 75186651 75186968 318.0 - 0 ENSG00000240366.1 processed_pseudogene RPL36AP45 1 OTTHUMG00000158029.1 pseudo_consens +24987 chr15 HAVANA gene 75211301 75212167 206.0 - 0 ENSG00000261779.1 antisense AC113208.3 2 OTTHUMG00000172790.1 +24988 chr15 HAVANA gene 75195643 75212169 5812.0 + 0 ENSG00000167173.18 protein_coding C15orf39 2 OTTHUMG00000142820.4 +24989 chr15 HAVANA gene 75226401 75234834 2663.0 - 0 ENSG00000260660.4 transcribed_unitary_pseudogene AC113208.2 2 OTTHUMG00000172668.4 +24990 chr15 HAVANA gene 75249232 75249407 176.0 - 0 ENSG00000260104.1 unprocessed_pseudogene AC068338.1 2 OTTHUMG00000172669.1 +24991 chr15 HAVANA gene 75251743 75252934 1192.0 - 0 ENSG00000261205.2 processed_pseudogene NIFKP4 1 OTTHUMG00000172670.2 pseudo_consens +24992 chr15 ENSEMBL gene 75268430 75268652 223.0 + 0 ENSG00000277295.1 misc_RNA RN7SL489P 3 +24993 chr15 HAVANA gene 75258599 75270199 2082.0 + 0 ENSG00000167195.7 protein_coding GOLGA6C 2 OTTHUMG00000172671.2 ncRNA_host +24994 chr15 ENSEMBL gene 75292706 75292928 223.0 + 0 ENSG00000275992.1 misc_RNA RN7SL327P 3 +24995 chr15 HAVANA gene 75282835 75295807 3455.0 + 0 ENSG00000140478.15 protein_coding GOLGA6D 2 OTTHUMG00000172672.2 ncRNA_host +24996 chr15 HAVANA gene 75299953 75302965 2305.0 - 0 ENSG00000260357.1 transcribed_unprocessed_pseudogene DNM1P34 2 OTTHUMG00000172673.1 +24997 chr15 HAVANA gene 75321397 75322693 1297.0 - 0 ENSG00000259790.1 transcribed_processed_pseudogene ANP32BP1 1 OTTHUMG00000172674.1 pseudo_consens +24998 chr15 HAVANA gene 75335891 75343224 6779.0 + 0 ENSG00000140365.15 protein_coding COMMD4 2 OTTHUMG00000142823.5 +24999 chr15 HAVANA gene 75346744 75347161 418.0 - 0 ENSG00000275645.1 antisense AC068338.3 2 OTTHUMG00000186960.1 +25000 chr15 ENSEMBL gene 75353611 75353685 75.0 - 0 ENSG00000284343.1 miRNA MIR631 3 +25001 chr15 HAVANA gene 75346955 75357114 6938.0 + 0 ENSG00000140398.13 protein_coding NEIL1 2 OTTHUMG00000142821.4 +25002 chr15 HAVANA gene 75355207 75368630 9142.0 - 0 ENSG00000140400.16 protein_coding MAN2C1 1 OTTHUMG00000172698.6 overlapping_locus +25003 chr15 HAVANA gene 75368155 75369584 1430.0 + 0 ENSG00000260274.1 lincRNA AC068338.2 2 OTTHUMG00000173067.1 +25004 chr15 HAVANA gene 75388267 75388828 562.0 + 0 ENSG00000241890.1 processed_pseudogene RPL13P4 1 OTTHUMG00000158030.1 pseudo_consens +25005 chr15 HAVANA gene 75415249 75416020 466.0 + 0 ENSG00000261714.2 processed_pseudogene AC105137.1 2 OTTHUMG00000172733.2 +25006 chr15 HAVANA gene 75452964 75453947 984.0 - 0 ENSG00000276744.1 sense_intronic AC105137.2 2 OTTHUMG00000186962.1 overlapping_locus +25007 chr15 HAVANA gene 75369379 75455842 12453.0 - 0 ENSG00000169375.15 protein_coding SIN3A 2 OTTHUMG00000142834.4 overlapping_locus +25008 chr15 HAVANA gene 75480661 75480836 176.0 + 0 ENSG00000260165.1 unprocessed_pseudogene AC105036.2 2 OTTHUMG00000172734.1 +25009 chr15 HAVANA gene 75512770 75513040 271.0 - 0 ENSG00000259931.2 processed_pseudogene AC105036.1 1 OTTHUMG00000172735.2 pseudo_consens,overlapping_locus +25010 chr15 HAVANA gene 75463251 75579289 8632.0 - 0 ENSG00000169410.9 protein_coding PTPN9 2 OTTHUMG00000142838.3 overlapping_locus +25011 chr15 HAVANA gene 75527150 75601205 1095.0 - 0 ENSG00000260269.5 processed_transcript AC105036.3 2 OTTHUMG00000172736.1 overlapping_locus +25012 chr15 HAVANA gene 75624793 75625690 560.0 + 0 ENSG00000260235.1 antisense AC105020.3 2 OTTHUMG00000172791.1 +25013 chr15 HAVANA gene 75598083 75626469 3516.0 - 0 ENSG00000169371.13 protein_coding SNUPN 2 OTTHUMG00000142833.5 overlapping_locus +25014 chr15 HAVANA gene 75636139 75639239 572.0 + 0 ENSG00000260206.1 antisense AC105020.2 2 OTTHUMG00000172792.1 +25015 chr15 HAVANA gene 75639760 75640976 1217.0 + 0 ENSG00000275454.1 antisense AC105020.6 2 OTTHUMG00000186970.1 +25016 chr15 HAVANA gene 75645020 75645442 423.0 + 0 ENSG00000274515.1 antisense AC105020.5 2 OTTHUMG00000186971.1 +25017 chr15 HAVANA gene 75639085 75648706 2565.0 - 0 ENSG00000177971.8 protein_coding IMP3 2 OTTHUMG00000142840.3 +25018 chr15 HAVANA gene 75647906 75662301 8008.0 + 0 ENSG00000173548.8 protein_coding SNX33 2 OTTHUMG00000142835.2 +25019 chr15 HAVANA gene 75676227 75677162 563.0 + 0 ENSG00000260892.1 antisense AC105020.4 2 OTTHUMG00000172779.1 +25020 chr15 HAVANA gene 75678548 75680752 2205.0 + 0 ENSG00000203392.3 antisense AC105020.1 2 OTTHUMG00000186972.1 +25021 chr15 HAVANA gene 75674322 75712848 8290.0 - 0 ENSG00000173546.7 protein_coding CSPG4 2 OTTHUMG00000142836.1 +25022 chr15 HAVANA gene 75723977 75727688 1196.0 + 0 ENSG00000182950.2 protein_coding ODF3L1 2 OTTHUMG00000142837.1 +25023 chr15 HAVANA gene 75727670 75738623 3188.0 - 0 ENSG00000246877.1 antisense DNM1P35 2 OTTHUMG00000177189.1 +25024 chr15 HAVANA gene 75746769 75747263 495.0 + 0 ENSG00000260815.3 processed_pseudogene PPIAP47 1 OTTHUMG00000172794.3 pseudo_consens,overlapping_locus +25025 chr15 ENSEMBL gene 75762215 75762315 101.0 - 0 ENSG00000284385.1 miRNA MIR4313 3 +25026 chr15 HAVANA gene 75759501 75762405 2905.0 - 0 ENSG00000261043.5 lincRNA AC019294.3 2 OTTHUMG00000172896.1 ncRNA_host +25027 chr15 HAVANA gene 75737820 75763321 2489.0 + 0 ENSG00000260288.3 processed_transcript AC019294.2 2 OTTHUMG00000172793.2 overlapping_locus +25028 chr15 ENSEMBL gene 75785134 75785354 221.0 + 0 ENSG00000241807.3 misc_RNA RN7SL319P 3 +25029 chr15 HAVANA gene 75775553 75786898 2112.0 + 0 ENSG00000187812.12 transcribed_unprocessed_pseudogene AC019294.1 2 OTTHUMG00000172795.1 +25030 chr15 HAVANA gene 75791470 75792683 474.0 - 0 ENSG00000261820.1 unprocessed_pseudogene DNM1P49 2 OTTHUMG00000172796.1 +25031 chr15 ENSEMBL gene 75895040 75895302 263.0 + 0 ENSG00000266308.2 misc_RNA RN7SL510P 3 +25032 chr15 HAVANA gene 75843285 75901078 3852.0 + 0 ENSG00000140367.11 protein_coding UBE2Q2 2 OTTHUMG00000142839.2 ncRNA_host +25033 chr15 HAVANA gene 75903859 75942510 11837.0 + 0 ENSG00000167196.13 protein_coding FBXO22 1 OTTHUMG00000142841.5 +25034 chr15 HAVANA gene 75950464 75951144 681.0 - 0 ENSG00000260685.1 processed_pseudogene AC027104.1 1 OTTHUMG00000172846.1 pseudo_consens,overlapping_locus +25035 chr15 HAVANA gene 75935969 76059795 5031.0 - 0 ENSG00000169752.16 protein_coding NRG4 2 OTTHUMG00000142917.3 overlapping_locus +25036 chr15 HAVANA gene 76174891 76181486 2354.0 - 0 ENSG00000259422.1 antisense AC091100.1 2 OTTHUMG00000172584.1 +25037 chr15 HAVANA gene 76059837 76229121 5265.0 + 0 ENSG00000169758.12 protein_coding TMEM266 1 OTTHUMG00000142918.6 +25038 chr15 ENSEMBL gene 76230048 76230390 343.0 - 0 ENSG00000196274.5 misc_RNA RF00017 3 +25039 chr15 HAVANA gene 76258986 76261690 2705.0 - 0 ENSG00000259581.3 processed_pseudogene TYRO3P 2 OTTHUMG00000172619.3 overlapping_locus +25040 chr15 HAVANA gene 76215355 76311472 5031.0 - 0 ENSG00000140374.15 protein_coding ETFA 1 OTTHUMG00000172586.6 ncRNA_host,overlapping_locus +25041 chr15 HAVANA gene 76339609 76342063 758.0 - 0 ENSG00000259514.1 antisense AC027243.1 2 OTTHUMG00000172620.1 +25042 chr15 HAVANA gene 76336724 76342476 2221.0 + 0 ENSG00000159556.9 protein_coding ISL2 2 OTTHUMG00000143723.3 +25043 chr15 HAVANA gene 76343642 76344365 724.0 + 0 ENSG00000270036.1 lincRNA AC027243.2 2 OTTHUMG00000184124.1 +25044 chr15 HAVANA gene 76472099 76472365 267.0 + 0 ENSG00000261232.2 processed_pseudogene AC090751.1 2 OTTHUMG00000172666.2 +25045 chr15 ENSEMBL gene 76586647 76586691 45.0 + 0 ENSG00000266449.1 miRNA MIR3713 3 +25046 chr15 ENSEMBL gene 76736641 76736980 340.0 + 0 ENSG00000201510.1 misc_RNA RN7SKP217 3 +25047 chr15 HAVANA gene 76347904 76905444 11610.0 - 0 ENSG00000140386.12 protein_coding SCAPER 1 OTTHUMG00000172655.4 +25048 chr15 HAVANA gene 76931619 76954392 10019.0 + 0 ENSG00000117906.13 protein_coding RCN2 2 OTTHUMG00000143730.3 +25049 chr15 ENSEMBL gene 76976915 76977210 296.0 - 0 ENSG00000243365.3 misc_RNA RN7SL278P 3 +25050 chr15 HAVANA gene 76979245 76980451 1207.0 - 0 ENSG00000259565.2 processed_pseudogene KRT8P23 1 OTTHUMG00000172602.2 pseudo_consens +25051 chr15 HAVANA gene 76993359 77037332 4468.0 + 0 ENSG00000140368.12 protein_coding PSTPIP1 1 OTTHUMG00000172594.5 +25052 chr15 HAVANA gene 77043680 77045160 264.0 + 0 ENSG00000259652.1 lincRNA AC090181.1 2 OTTHUMG00000172617.1 +25053 chr15 HAVANA gene 77063397 77064910 1514.0 - 0 ENSG00000278991.1 TEC AC090181.3 2 OTTHUMG00000177201.1 overlapping_locus +25054 chr15 HAVANA gene 77067654 77068325 672.0 - 0 ENSG00000269951.1 sense_intronic AC090181.2 2 OTTHUMG00000183983.1 overlapping_locus +25055 chr15 HAVANA gene 77041404 77083984 8506.0 - 0 ENSG00000140391.14 protein_coding TSPAN3 1 OTTHUMG00000143728.9 overlapping_locus +25056 chr15 HAVANA gene 77204578 77205100 245.0 + 0 ENSG00000259722.2 processed_pseudogene AC087465.1 1 OTTHUMG00000172622.2 pseudo_consens +25057 chr15 HAVANA gene 77278465 77278774 310.0 + 0 ENSG00000230459.3 processed_pseudogene AC060773.1 2 OTTHUMG00000172624.2 +25058 chr15 HAVANA gene 77100656 77420144 24184.0 - 0 ENSG00000173517.10 protein_coding PEAK1 1 OTTHUMG00000172618.11 +25059 chr15 HAVANA gene 77484275 77485606 1332.0 - 0 ENSG00000279033.1 TEC AC090984.1 2 OTTHUMG00000173008.1 +25060 chr15 HAVANA gene 77420412 77485607 6403.0 + 0 ENSG00000140382.14 protein_coding HMG20A 1 OTTHUMG00000143729.7 +25061 chr15 HAVANA gene 77525540 77534110 3814.0 + 0 ENSG00000259362.2 lincRNA AC046168.1 2 OTTHUMG00000172610.2 +25062 chr15 HAVANA gene 77568970 77608888 1224.0 + 0 ENSG00000259420.5 lincRNA AC046168.2 2 OTTHUMG00000172611.3 +25063 chr15 HAVANA gene 77641764 77652288 2720.0 + 0 ENSG00000259666.2 antisense LINGO1-AS1 2 OTTHUMG00000172626.2 +25064 chr15 HAVANA gene 77660052 77668074 663.0 + 0 ENSG00000259281.1 antisense LINGO1-AS2 2 OTTHUMG00000172627.1 +25065 chr15 HAVANA gene 77784610 77785070 461.0 - 0 ENSG00000280359.1 TEC AC105133.2 2 OTTHUMG00000172977.1 overlapping_locus +25066 chr15 HAVANA gene 77787193 77788674 841.0 + 0 ENSG00000259213.1 antisense AC105133.1 2 OTTHUMG00000172628.1 +25067 chr15 HAVANA gene 77613027 77820900 4902.0 - 0 ENSG00000169783.12 protein_coding LINGO1 1 OTTHUMG00000172629.8 overlapping_locus +25068 chr15 HAVANA gene 77894684 77904674 4818.0 + 0 ENSG00000260139.6 transcribed_unprocessed_pseudogene CSPG4P13 2 OTTHUMG00000172978.1 +25069 chr15 ENSEMBL gene 77916718 77916982 265.0 - 0 ENSG00000242066.3 misc_RNA RN7SL214P 3 +25070 chr15 HAVANA gene 77916522 77922019 353.0 + 0 ENSG00000261244.1 lincRNA AC104758.4 2 OTTHUMG00000172980.1 +25071 chr15 HAVANA gene 77914217 77926846 3175.0 - 0 ENSG00000260776.5 transcribed_unprocessed_pseudogene AC104758.3 2 OTTHUMG00000172979.1 +25072 chr15 HAVANA gene 77941442 77944582 876.0 - 0 ENSG00000214646.8 transcribed_unprocessed_pseudogene AC104758.1 2 OTTHUMG00000172981.1 +25073 chr15 HAVANA gene 77954075 77963654 571.0 - 0 ENSG00000261403.1 lincRNA AC104758.5 2 OTTHUMG00000172982.1 +25074 chr15 HAVANA gene 77976042 77993057 3758.0 + 0 ENSG00000261143.1 transcribed_unprocessed_pseudogene ADAMTS7P3 2 OTTHUMG00000172983.1 +25075 chr15 HAVANA gene 77993405 77995289 483.0 + 0 ENSG00000259792.1 antisense AC104758.2 2 OTTHUMG00000172984.1 +25076 chr15 HAVANA gene 77984036 78077724 9763.0 - 0 ENSG00000167202.11 protein_coding TBC1D2B 1 OTTHUMG00000152885.4 +25077 chr15 ENSEMBL gene 78091172 78091297 126.0 - 0 ENSG00000199633.1 snoRNA RF00092 3 +25078 chr15 HAVANA gene 78077808 78104909 2881.0 + 0 ENSG00000183476.12 protein_coding SH2D7 1 OTTHUMG00000154271.2 +25079 chr15 HAVANA gene 78104606 78131544 2146.0 - 0 ENSG00000136425.13 protein_coding CIB2 2 OTTHUMG00000143731.5 +25080 chr15 HAVANA gene 78141243 78143173 1931.0 + 0 ENSG00000260988.1 lincRNA AC090260.1 2 OTTHUMG00000173065.1 overlapping_locus +25081 chr15 HAVANA gene 78131498 78171949 6832.0 + 0 ENSG00000166411.13 protein_coding IDH3A 2 OTTHUMG00000143732.11 overlapping_locus +25082 chr15 HAVANA gene 78167468 78245688 8230.0 - 0 ENSG00000103740.9 protein_coding ACSBG1 1 OTTHUMG00000143734.5 +25083 chr15 HAVANA gene 78250502 78264156 685.0 - 0 ENSG00000259708.1 antisense AC090607.3 2 OTTHUMG00000172583.1 +25084 chr15 HAVANA gene 78280950 78282190 369.0 - 0 ENSG00000272418.1 sense_intronic AC090607.4 2 OTTHUMG00000185819.1 overlapping_locus +25085 chr15 HAVANA gene 78264086 78282196 6591.0 + 0 ENSG00000140403.12 protein_coding DNAJA4 1 OTTHUMG00000143733.8 +25086 chr15 HAVANA gene 78290527 78291221 695.0 - 0 ENSG00000259562.2 transcribed_processed_pseudogene AC090607.2 1 OTTHUMG00000172572.2 pseudo_consens,overlapping_locus +25087 chr15 HAVANA gene 78293286 78296049 449.0 + 0 ENSG00000259322.1 antisense AC090607.1 2 OTTHUMG00000172565.1 +25088 chr15 HAVANA gene 78277835 78299794 7279.0 - 0 ENSG00000140395.8 protein_coding WDR61 1 OTTHUMG00000143735.7 overlapping_locus +25089 chr15 HAVANA gene 78299701 78299924 224.0 + 0 ENSG00000277482.1 antisense AC090607.5 2 OTTHUMG00000186975.1 +25090 chr15 HAVANA gene 78339208 78341757 2550.0 - 0 ENSG00000279694.1 TEC AC011270.2 2 OTTHUMG00000177202.1 +25091 chr15 HAVANA gene 78340324 78348230 993.0 + 0 ENSG00000166426.7 protein_coding CRABP1 1 OTTHUMG00000143862.4 +25092 chr15 HAVANA gene 78382573 78383155 583.0 + 0 ENSG00000259413.2 processed_pseudogene AC011270.1 1 OTTHUMG00000172566.2 pseudo_consens +25093 chr15 HAVANA gene 78480057 78481820 325.0 - 0 ENSG00000259474.1 antisense AC027228.1 2 OTTHUMG00000172564.1 +25094 chr15 HAVANA gene 78437431 78501456 10806.0 + 0 ENSG00000136381.12 protein_coding IREB2 2 OTTHUMG00000143861.7 +25095 chr15 HAVANA gene 78507564 78537372 5707.0 + 0 ENSG00000188266.13 protein_coding HYKK 2 OTTHUMG00000177204.2 +25096 chr15 HAVANA gene 78537681 78538946 1266.0 + 0 ENSG00000279373.1 TEC AC027228.3 2 OTTHUMG00000187318.1 +25097 chr15 HAVANA gene 78540405 78552419 6996.0 + 0 ENSG00000041357.15 protein_coding PSMA4 1 OTTHUMG00000143859.10 +25098 chr15 HAVANA gene 78589123 78591276 2154.0 - 0 ENSG00000261762.1 antisense AC027228.2 2 OTTHUMG00000177203.1 +25099 chr15 HAVANA gene 78565520 78595269 3623.0 + 0 ENSG00000169684.13 protein_coding CHRNA5 1 OTTHUMG00000143858.3 +25100 chr15 HAVANA gene 78599892 78600013 122.0 - 0 ENSG00000279421.1 TEC AC067863.2 2 OTTHUMG00000179503.1 overlapping_locus +25101 chr15 HAVANA gene 78593052 78621295 4765.0 - 0 ENSG00000080644.15 protein_coding CHRNA3 1 OTTHUMG00000143863.5 overlapping_locus +25102 chr15 HAVANA gene 78625895 78628193 1980.0 + 0 ENSG00000259555.1 antisense AC067863.1 2 OTTHUMG00000172513.1 +25103 chr15 HAVANA gene 78661047 78661576 530.0 - 0 ENSG00000213307.4 processed_pseudogene RPL18P11 1 OTTHUMG00000158032.1 pseudo_consens,overlapping_locus +25104 chr15 HAVANA gene 78624119 78727754 4976.0 - 0 ENSG00000117971.11 protein_coding CHRNB4 1 OTTHUMG00000143860.4 overlapping_locus +25105 chr15 HAVANA gene 78660644 78736684 2668.0 + 0 ENSG00000261303.6 transcribed_unprocessed_pseudogene AC022748.2 2 OTTHUMG00000172905.2 +25106 chr15 HAVANA gene 78749833 78750107 275.0 - 0 ENSG00000273512.1 unprocessed_pseudogene AC022748.3 2 OTTHUMG00000187867.1 +25107 chr15 HAVANA gene 78752107 78753373 392.0 + 0 ENSG00000238166.2 transcribed_unprocessed_pseudogene AC022748.1 2 OTTHUMG00000172906.1 +25108 chr15 HAVANA gene 78759203 78811431 7730.0 - 0 ENSG00000136378.14 protein_coding ADAMTS7 2 OTTHUMG00000172907.1 +25109 chr15 HAVANA gene 78863247 78863729 483.0 - 0 ENSG00000243711.1 processed_pseudogene RPL21P116 1 OTTHUMG00000158036.1 pseudo_consens +25110 chr15 HAVANA gene 78810487 78898133 6584.0 + 0 ENSG00000185787.14 protein_coding MORF4L1 1 OTTHUMG00000143865.8 +25111 chr15 ENSEMBL gene 78898840 78898936 97.0 - 0 ENSG00000252061.1 snRNA RNU6-415P 3 +25112 chr15 HAVANA gene 78906127 78906809 683.0 + 0 ENSG00000279235.1 TEC AC011944.2 2 OTTHUMG00000173036.1 +25113 chr15 HAVANA gene 78921058 78949574 5892.0 - 0 ENSG00000103811.16 protein_coding CTSH 2 OTTHUMG00000144171.5 +25114 chr15 HAVANA gene 78978889 78985926 1900.0 + 0 ENSG00000177699.4 antisense AC011944.1 2 OTTHUMG00000172504.1 +25115 chr15 HAVANA gene 78959947 79090773 9929.0 - 0 ENSG00000058335.15 protein_coding RASGRF1 1 OTTHUMG00000144172.3 +25116 chr15 ENSEMBL gene 79209788 79209871 84.0 + 0 ENSG00000207695.1 miRNA MIR184 3 +25117 chr15 HAVANA gene 79236332 79237206 875.0 + 0 ENSG00000259419.2 processed_pseudogene HNRNPCP3 1 OTTHUMG00000172070.2 pseudo_consens +25118 chr15 HAVANA gene 79191707 79283945 1543.0 - 0 ENSG00000259234.5 lincRNA ANKRD34C-AS1 2 OTTHUMG00000172071.2 +25119 chr15 HAVANA gene 79293285 79298235 4951.0 + 0 ENSG00000235711.4 protein_coding ANKRD34C 2 OTTHUMG00000172072.3 +25120 chr15 HAVANA gene 79311062 79427432 19470.0 + 0 ENSG00000166557.12 protein_coding TMED3 1 OTTHUMG00000144170.4 +25121 chr15 HAVANA gene 79432516 79472290 6800.0 + 0 ENSG00000169330.8 protein_coding KIAA1024 2 OTTHUMG00000172073.1 +25122 chr15 HAVANA gene 79559256 79560304 1049.0 - 0 ENSG00000259493.2 processed_pseudogene AC023968.2 1 OTTHUMG00000172476.2 pseudo_consens +25123 chr15 HAVANA gene 79668342 79668816 475.0 - 0 ENSG00000259208.2 processed_pseudogene AC023968.1 1 OTTHUMG00000172074.2 pseudo_consens +25124 chr15 HAVANA gene 79743311 79743468 158.0 + 0 ENSG00000260674.2 processed_pseudogene AC026826.3 2 OTTHUMG00000176723.2 +25125 chr15 HAVANA gene 79751689 79752049 361.0 - 0 ENSG00000213527.5 processed_pseudogene AC026826.1 1 OTTHUMG00000158038.2 pseudo_consens +25126 chr15 HAVANA gene 79758549 79758762 214.0 - 0 ENSG00000259229.2 processed_pseudogene AC026826.2 2 OTTHUMG00000172075.2 +25127 chr15 ENSEMBL gene 79817349 79817450 102.0 - 0 ENSG00000252995.1 snRNA RNU6-667P 3 +25128 chr15 HAVANA gene 79832466 79833554 539.0 - 0 ENSG00000259548.1 lincRNA AC021483.1 2 OTTHUMG00000172076.1 +25129 chr15 HAVANA gene 79843547 79844304 758.0 - 0 ENSG00000261229.6 lincRNA AC021483.2 2 OTTHUMG00000176724.1 overlapping_locus +25130 chr15 HAVANA gene 79875920 79878179 2260.0 - 0 ENSG00000279394.1 TEC AC015871.4 2 OTTHUMG00000176725.1 overlapping_locus +25131 chr15 HAVANA gene 79833585 79897379 1633.0 - 0 ENSG00000136371.10 protein_coding MTHFS 1 OTTHUMG00000144174.4 overlapping_locus +25132 chr15 HAVANA gene 79920195 79922455 2261.0 - 0 ENSG00000278600.1 sense_intronic AC015871.3 2 OTTHUMG00000176726.2 overlapping_locus +25133 chr15 HAVANA gene 79898840 79923702 1614.0 - 0 ENSG00000180953.11 protein_coding ST20 2 OTTHUMG00000172078.2 overlapping_locus +25134 chr15 HAVANA gene 79845150 79923754 982.0 - 0 ENSG00000259332.3 protein_coding ST20-MTHFS 2 OTTHUMG00000172077.4 overlapping_locus +25135 chr15 HAVANA gene 79922771 79926993 4223.0 + 0 ENSG00000259642.2 antisense ST20-AS1 2 OTTHUMG00000172079.2 +25136 chr15 HAVANA gene 79944498 79945578 1081.0 + 0 ENSG00000259770.2 processed_pseudogene AC015871.1 1 OTTHUMG00000172477.2 pseudo_consens +25137 chr15 HAVANA gene 79960889 79971446 1089.0 - 0 ENSG00000140379.7 protein_coding BCL2A1 2 OTTHUMG00000144173.1 +25138 chr15 HAVANA gene 79984151 79985724 948.0 + 0 ENSG00000271364.1 processed_pseudogene AC015871.2 1 OTTHUMG00000184917.1 pseudo_consens +25139 chr15 HAVANA gene 79989905 79990606 702.0 + 0 ENSG00000279719.1 TEC AC015871.5 2 OTTHUMG00000176727.1 +25140 chr15 HAVANA gene 80014157 80015707 1551.0 + 0 ENSG00000279705.1 TEC AC092701.1 2 OTTHUMG00000176728.1 +25141 chr15 ENSEMBL gene 80057425 80057684 260.0 - 0 ENSG00000275460.1 misc_RNA RF00017 3 +25142 chr15 HAVANA gene 80059568 80138393 5153.0 + 0 ENSG00000086666.18 protein_coding ZFAND6 1 OTTHUMG00000144169.6 +25143 chr15 HAVANA gene 80165923 80166980 556.0 + 0 ENSG00000259967.1 lincRNA AC087761.1 2 OTTHUMG00000176729.1 overlapping_locus +25144 chr15 HAVANA gene 80152490 80186946 7063.0 + 0 ENSG00000103876.12 protein_coding FAH 2 OTTHUMG00000144187.5 overlapping_locus +25145 chr15 HAVANA gene 80195484 80252213 6890.0 - 0 ENSG00000259417.2 protein_coding CTXND1 2 OTTHUMG00000172080.5 +25146 chr15 HAVANA gene 80263068 80341805 3664.0 - 0 ENSG00000259361.6 lincRNA LINC00927 2 OTTHUMG00000172168.3 +25147 chr15 HAVANA gene 80344853 80403575 7251.0 - 0 ENSG00000259495.2 lincRNA AC016705.2 1 OTTHUMG00000172167.3 +25148 chr15 HAVANA gene 80433795 80445152 1891.0 - 0 ENSG00000258010.4 antisense AC016705.1 2 OTTHUMG00000169345.2 +25149 chr15 HAVANA gene 80554609 80562944 2520.0 - 0 ENSG00000259175.1 antisense AC108451.1 2 OTTHUMG00000172165.1 +25150 chr15 HAVANA gene 80580029 80580566 538.0 - 0 ENSG00000270919.1 antisense AC108451.2 2 OTTHUMG00000185125.1 +25151 chr15 ENSEMBL gene 80581103 80581239 137.0 + 0 ENSG00000284059.1 miRNA MIR5572 3 +25152 chr15 HAVANA gene 80404350 80597937 7741.0 + 0 ENSG00000172379.20 protein_coding ARNT2 1 OTTHUMG00000165478.8 ncRNA_host +25153 chr15 ENSEMBL gene 80663772 80663878 107.0 + 0 ENSG00000222139.1 snRNA RNU6-380P 3 +25154 chr15 HAVANA gene 80693216 80693707 492.0 - 0 ENSG00000271983.1 lincRNA AC023302.1 2 OTTHUMG00000185310.1 +25155 chr15 HAVANA gene 80679684 80755621 3627.0 + 0 ENSG00000136379.11 protein_coding ABHD17C 2 OTTHUMG00000172282.1 +25156 chr15 ENSEMBL gene 80841978 80842073 96.0 - 0 ENSG00000208003.1 miRNA MIR549A 3 +25157 chr15 HAVANA gene 80896191 80909777 744.0 - 0 ENSG00000259649.4 antisense AC027808.2 1 OTTHUMG00000172298.1 overlapping_locus +25158 chr15 HAVANA gene 80896190 80948867 683.0 - 0 ENSG00000259546.1 antisense AC027808.1 2 OTTHUMG00000172307.1 overlapping_locus +25159 chr15 HAVANA gene 80779343 80951776 7621.0 + 0 ENSG00000103888.16 protein_coding CEMIP 2 OTTHUMG00000144184.4 +25160 chr15 HAVANA gene 80946289 80989878 7510.0 - 0 ENSG00000117899.10 protein_coding MESD 1 OTTHUMG00000172288.3 overlapping_locus +25161 chr15 HAVANA gene 80990804 80993258 2455.0 - 0 ENSG00000260619.1 lincRNA AC068870.1 2 OTTHUMG00000173021.1 +25162 chr15 ENSEMBL gene 80997417 80997473 57.0 - 0 ENSG00000265855.1 miRNA MIR4514 3 +25163 chr15 HAVANA gene 80999593 80999981 389.0 - 0 ENSG00000277782.1 lincRNA AC068870.2 2 OTTHUMG00000186976.1 +25164 chr15 HAVANA gene 81000944 81005788 4845.0 + 0 ENSG00000140406.3 protein_coding TLNRD1 2 OTTHUMG00000144185.1 +25165 chr15 HAVANA gene 81060953 81063488 2536.0 + 0 ENSG00000279834.1 TEC AC068870.3 2 OTTHUMG00000173045.1 overlapping_locus +25166 chr15 HAVANA gene 81117635 81118340 706.0 - 0 ENSG00000259461.1 processed_pseudogene ANP32BP3 1 OTTHUMG00000172264.1 pseudo_consens +25167 chr15 HAVANA gene 81007033 81149175 1979.0 + 0 ENSG00000156206.13 protein_coding CFAP161 1 OTTHUMG00000172263.2 overlapping_locus +25168 chr15 HAVANA gene 81303215 81309391 476.0 - 0 ENSG00000271725.1 3prime_overlapping_ncRNA AC103858.1 2 OTTHUMG00000185824.1 overlapping_locus +25169 chr15 HAVANA gene 81159575 81314058 12094.0 + 0 ENSG00000172349.17 protein_coding IL16 1 OTTHUMG00000144186.9 +25170 chr15 HAVANA gene 81309053 81324183 6339.0 - 0 ENSG00000172345.13 protein_coding STARD5 2 OTTHUMG00000147342.3 overlapping_locus +25171 chr15 HAVANA gene 81335577 81336119 543.0 + 0 ENSG00000273920.1 antisense AC103858.2 2 OTTHUMG00000186977.1 overlapping_locus +25172 chr15 HAVANA gene 81331217 81374213 4848.0 - 0 ENSG00000188869.12 protein_coding TMC3 1 OTTHUMG00000172314.3 +25173 chr15 HAVANA gene 81385390 81385774 385.0 + 0 ENSG00000284709.1 processed_pseudogene KF456110.1 2 OTTHUMG00000192341.1 +25174 chr15 HAVANA gene 81403026 81403570 545.0 + 0 ENSG00000275995.1 lincRNA AC109809.1 2 OTTHUMG00000186981.1 +25175 chr15 HAVANA gene 81324377 81518200 7767.0 + 0 ENSG00000259343.6 antisense TMC3-AS1 2 OTTHUMG00000172313.2 +25176 chr15 HAVANA gene 81633887 81642190 476.0 - 0 ENSG00000259610.1 lincRNA AC023034.2 2 OTTHUMG00000172169.1 +25177 chr15 HAVANA gene 81554003 81696780 1087.0 + 0 ENSG00000259594.5 lincRNA AC023034.1 2 OTTHUMG00000172166.1 overlapping_locus +25178 chr15 HAVANA gene 81427448 81755217 564.0 + 0 ENSG00000259543.1 lincRNA AC060809.1 2 OTTHUMG00000172164.1 overlapping_locus +25179 chr15 HAVANA gene 81660482 81871125 767.0 - 0 ENSG00000259692.5 lincRNA AC104041.1 2 OTTHUMG00000172170.1 +25180 chr15 HAVANA gene 81953303 81995666 526.0 - 0 ENSG00000259445.1 lincRNA AC025219.1 2 OTTHUMG00000172171.1 +25181 chr15 HAVANA gene 82010212 82010607 396.0 - 0 ENSG00000259622.1 processed_pseudogene AC026956.1 1 OTTHUMG00000172172.1 pseudo_consens +25182 chr15 HAVANA gene 82041778 82046141 4364.0 - 0 ENSG00000183496.5 protein_coding MEX3B 2 OTTHUMG00000147356.3 +25183 chr15 HAVANA gene 82088594 82097694 2568.0 + 0 ENSG00000259518.1 lincRNA LINC01583 1 OTTHUMG00000172173.1 +25184 chr15 ENSEMBL gene 82174224 82174385 162.0 - 0 ENSG00000212170.1 snRNA RNU1-77P 3 +25185 chr15 HAVANA gene 82180743 82182700 928.0 + 0 ENSG00000285974.1 antisense AC026624.1 2 OTTHUMG00000193222.1 +25186 chr15 HAVANA gene 82130230 82262763 4733.0 - 0 ENSG00000140598.14 protein_coding EFL1 2 OTTHUMG00000172573.4 ncRNA_host +25187 chr15 HAVANA gene 82262810 82284930 4160.0 + 0 ENSG00000188659.9 protein_coding SAXO2 1 OTTHUMG00000172646.2 +25188 chr15 HAVANA gene 82298553 82334609 4875.0 + 0 ENSG00000274376.4 transcribed_unprocessed_pseudogene ADAMTS7P1 2 OTTHUMG00000172575.4 +25189 chr15 HAVANA gene 82339998 82349475 4715.0 - 0 ENSG00000278662.4 protein_coding GOLGA6L10 2 OTTHUMG00000172580.3 +25190 chr15 HAVANA gene 82372196 82372912 717.0 - 0 ENSG00000237550.5 transcribed_processed_pseudogene RPL9P9 2 OTTHUMG00000158044.2 +25191 chr15 HAVANA gene 82355142 82420075 1855.0 + 0 ENSG00000259429.5 transcribed_unprocessed_pseudogene UBE2Q2P2 2 OTTHUMG00000172604.3 overlapping_locus +25192 chr15 HAVANA gene 82418651 82434235 785.0 + 0 ENSG00000278202.1 processed_transcript AC243919.1 2 OTTHUMG00000172607.3 overlapping_locus +25193 chr15 HAVANA gene 82430018 82439153 6576.0 + 0 ENSG00000197978.9 protein_coding GOLGA6L9 2 OTTHUMG00000170547.4 overlapping_locus +25194 chr15 HAVANA gene 82445719 82454837 457.0 + 0 ENSG00000275695.1 transcribed_unprocessed_pseudogene UBE2Q2P6 1 OTTHUMG00000187868.3 pseudo_consens +25195 chr15 HAVANA gene 82472203 82472426 224.0 + 0 ENSG00000278603.1 unprocessed_pseudogene AC245033.3 2 OTTHUMG00000188523.1 +25196 chr15 HAVANA gene 82459472 82477258 7178.0 + 0 ENSG00000276710.4 transcribed_unprocessed_pseudogene CSPG4P10 2 OTTHUMG00000170548.2 +25197 chr15 HAVANA gene 82472993 82513950 1758.0 - 0 ENSG00000255769.7 transcribed_unprocessed_pseudogene GOLGA2P10 2 OTTHUMG00000170549.4 +25198 chr15 HAVANA gene 82519590 82526412 1551.0 + 0 ENSG00000277741.4 transcribed_unprocessed_pseudogene GOLGA6L17P 1 OTTHUMG00000163391.4 pseudo_consens +25199 chr15 HAVANA gene 82531653 82534139 433.0 - 0 ENSG00000259637.1 unprocessed_pseudogene DNM1P38 2 OTTHUMG00000172546.1 overlapping_locus +25200 chr15 HAVANA gene 82533175 82540008 312.0 - 0 ENSG00000284803.1 processed_transcript AC245033.4 2 OTTHUMG00000192483.1 overlapping_locus +25201 chr15 HAVANA gene 82536750 82540564 3293.0 - 0 ENSG00000182774.12 protein_coding RPS17 2 OTTHUMG00000147355.7 overlapping_locus +25202 chr15 HAVANA gene 82540870 82562374 421.0 + 0 ENSG00000278013.1 lincRNA AC245033.2 2 OTTHUMG00000172876.2 +25203 chr15 HAVANA gene 82536788 82573194 2211.0 - 0 ENSG00000260836.2 protein_coding AC245033.1 2 OTTHUMG00000172875.3 overlapping_locus +25204 chr15 HAVANA gene 82543201 82648861 8215.0 - 0 ENSG00000214575.9 protein_coding CPEB1 1 OTTHUMG00000172877.6 overlapping_locus +25205 chr15 HAVANA gene 82691723 82692358 636.0 - 0 ENSG00000259707.1 processed_pseudogene AC105339.4 1 OTTHUMG00000172389.1 pseudo_consens,overlapping_locus +25206 chr15 HAVANA gene 82647770 82692820 5014.0 + 0 ENSG00000259462.2 antisense CPEB1-AS1 2 OTTHUMG00000172386.2 overlapping_locus +25207 chr15 HAVANA gene 82659281 82709914 8866.0 - 0 ENSG00000103723.13 protein_coding AP3B2 1 OTTHUMG00000168009.6 overlapping_locus +25208 chr15 HAVANA gene 82710471 82714029 2820.0 - 0 ENSG00000228141.7 transcribed_unitary_pseudogene AC105339.1 2 OTTHUMG00000154948.4 +25209 chr15 HAVANA gene 82725873 82738904 2096.0 - 0 ENSG00000259315.1 transcribed_processed_pseudogene ACTG1P17 1 OTTHUMG00000172407.3 pseudo_consens +25210 chr15 HAVANA gene 82738386 82739122 737.0 + 0 ENSG00000279758.1 TEC AC105339.5 2 OTTHUMG00000173043.1 +25211 chr15 HAVANA gene 82744223 82750289 1091.0 + 0 ENSG00000259442.1 antisense AC105339.3 2 OTTHUMG00000172406.1 +25212 chr15 ENSEMBL gene 82755945 82756071 127.0 + 0 ENSG00000277864.1 scaRNA SCARNA15 3 +25213 chr15 HAVANA gene 82750564 82757206 1053.0 + 0 ENSG00000250988.7 antisense SNHG21 2 OTTHUMG00000172404.1 ncRNA_host,overlapping_locus +25214 chr15 HAVANA gene 82752884 82757208 4325.0 + 0 ENSG00000252690.3 processed_transcript AC105339.2 2 OTTHUMG00000172405.1 ncRNA_host,overlapping_locus +25215 chr15 HAVANA gene 82755362 82806070 6536.0 - 0 ENSG00000186628.12 protein_coding FSD2 1 OTTHUMG00000172400.3 +25216 chr15 HAVANA gene 82809628 82836108 5123.0 + 0 ENSG00000156232.7 protein_coding WHAMM 2 OTTHUMG00000172422.2 +25217 chr15 HAVANA gene 82836946 82986153 14685.0 - 0 ENSG00000103942.12 protein_coding HOMER2 1 OTTHUMG00000172462.6 +25218 chr15 HAVANA gene 82986207 82991057 1568.0 + 0 ENSG00000169612.3 protein_coding RAMAC 2 OTTHUMG00000147357.1 overlapping_locus +25219 chr15 HAVANA gene 82988441 83011641 13893.0 - 0 ENSG00000169609.13 protein_coding C15orf40 1 OTTHUMG00000160473.10 +25220 chr15 HAVANA gene 83020115 83020802 688.0 + 0 ENSG00000273747.1 antisense AC022558.3 2 OTTHUMG00000186982.1 overlapping_locus +25221 chr15 HAVANA gene 83022236 83024336 454.0 - 0 ENSG00000259767.1 sense_intronic AC022558.1 2 OTTHUMG00000172631.1 overlapping_locus +25222 chr15 HAVANA gene 83044368 83044771 404.0 + 0 ENSG00000259308.3 processed_pseudogene AC024270.1 1 OTTHUMG00000172623.3 pseudo_consens,overlapping_locus +25223 chr15 HAVANA gene 83012661 83061845 421.0 + 0 ENSG00000260608.1 antisense AC024270.4 2 OTTHUMG00000172771.1 overlapping_locus +25224 chr15 HAVANA gene 83016422 83067354 4169.0 - 0 ENSG00000064726.9 protein_coding BTBD1 2 OTTHUMG00000147364.4 overlapping_locus +25225 chr15 ENSEMBL gene 83067335 83067415 81.0 + 0 ENSG00000263643.1 miRNA MIR4515 3 +25226 chr15 HAVANA gene 83022571 83090782 499.0 + 0 ENSG00000260351.1 antisense AC024270.2 2 OTTHUMG00000172772.1 ncRNA_host,overlapping_locus +25227 chr15 HAVANA gene 82925884 83103443 754.0 + 0 ENSG00000259805.1 antisense AC022558.2 2 OTTHUMG00000172770.1 ncRNA_host,overlapping_locus +25228 chr15 HAVANA gene 83113617 83114566 396.0 - 0 ENSG00000260579.1 antisense AC024270.3 2 OTTHUMG00000172667.1 overlapping_locus +25229 chr15 HAVANA gene 83107407 83144854 2661.0 + 0 ENSG00000136404.15 protein_coding TM6SF1 1 OTTHUMG00000147365.6 +25230 chr15 HAVANA gene 83112738 83208018 16253.0 - 0 ENSG00000166503.8 protein_coding HDGFL3 2 OTTHUMG00000172685.2 overlapping_locus +25231 chr15 HAVANA gene 83255903 83284714 4795.0 - 0 ENSG00000169594.13 protein_coding BNC1 1 OTTHUMG00000147362.2 +25232 chr15 HAVANA gene 83179182 83439445 943.0 + 0 ENSG00000259986.1 antisense AC103876.1 2 OTTHUMG00000172686.1 +25233 chr15 HAVANA gene 83447228 83618743 3363.0 + 0 ENSG00000140600.16 protein_coding SH3GL3 2 OTTHUMG00000147361.3 +25234 chr15 ENSEMBL gene 83717427 83717522 96.0 + 0 ENSG00000212374.1 snRNA RNU6-401P 3 +25235 chr15 HAVANA gene 83739784 83740199 416.0 + 0 ENSG00000261665.2 transcribed_processed_pseudogene TUBAP4 1 OTTHUMG00000172852.2 pseudo_consens,overlapping_locus +25236 chr15 ENSEMBL gene 83824863 83824953 91.0 - 0 ENSG00000200444.1 snRNA RNU6-1339P 3 +25237 chr15 HAVANA gene 83962176 83962583 408.0 + 0 ENSG00000274128.1 sense_intronic AC027807.2 2 OTTHUMG00000186985.1 overlapping_locus +25238 chr15 HAVANA gene 83654086 84039842 9754.0 + 0 ENSG00000156218.12 protein_coding ADAMTSL3 2 OTTHUMG00000147363.3 ncRNA_host,overlapping_locus +25239 chr15 HAVANA gene 84053113 84080097 996.0 - 0 ENSG00000259609.1 unprocessed_pseudogene AC027807.1 2 OTTHUMG00000172492.1 +25240 chr15 HAVANA gene 84080168 84126604 1798.0 + 0 ENSG00000259404.5 transcribed_unprocessed_pseudogene EFL1P1 2 OTTHUMG00000172493.3 +25241 chr15 HAVANA gene 84166547 84169896 3350.0 - 0 ENSG00000280038.1 TEC DNM1P41 2 OTTHUMG00000172494.1 +25242 chr15 HAVANA gene 84171178 84173194 546.0 - 0 ENSG00000259694.1 lincRNA AC136698.1 2 OTTHUMG00000172495.1 +25243 chr15 HAVANA gene 84172490 84182234 998.0 + 0 ENSG00000259511.2 protein_coding UBE2Q2L 2 OTTHUMG00000172496.2 +25244 chr15 HAVANA gene 84186752 84197384 4910.0 + 0 ENSG00000259726.1 unprocessed_pseudogene CSPG4P11 2 OTTHUMG00000172497.1 +25245 chr15 ENSEMBL gene 84205454 84205700 247.0 - 0 ENSG00000278422.1 misc_RNA RN7SL331P 3 +25246 chr15 HAVANA gene 84199311 84230136 4915.0 - 0 ENSG00000225151.10 transcribed_unprocessed_pseudogene GOLGA2P7 2 OTTHUMG00000133525.2 +25247 chr15 HAVANA gene 84235773 84245368 6065.0 + 0 ENSG00000184206.11 protein_coding GOLGA6L4 2 OTTHUMG00000163050.2 +25248 chr15 HAVANA gene 84255913 84256014 102.0 + 0 ENSG00000259633.1 unprocessed_pseudogene UBE2Q2P8 2 OTTHUMG00000172498.1 +25249 chr15 ENSEMBL gene 84394072 84394336 265.0 + 0 ENSG00000244056.3 misc_RNA RN7SL417P 3 +25250 chr15 HAVANA gene 84394512 84395514 389.0 + 0 ENSG00000259570.1 unprocessed_pseudogene AC243562.1 2 OTTHUMG00000172500.1 overlapping_locus +25251 chr15 HAVANA gene 84389729 84395903 970.0 + 0 ENSG00000259683.1 unprocessed_pseudogene AC243562.2 2 OTTHUMG00000172499.1 overlapping_locus +25252 chr15 HAVANA gene 84401807 84408005 3730.0 - 0 ENSG00000272887.1 transcribed_unprocessed_pseudogene CSPG4P5 1 OTTHUMG00000172439.2 pseudo_consens,overlapping_locus +25253 chr15 HAVANA gene 84398316 84411701 8796.0 - 0 ENSG00000235370.6 transcribed_unprocessed_pseudogene DNM1P51 2 OTTHUMG00000172438.1 overlapping_locus +25254 chr15 HAVANA gene 84412773 84421837 205.0 - 0 ENSG00000259538.1 transcribed_unprocessed_pseudogene UBE2Q2P11 1 OTTHUMG00000185780.1 pseudo_consens +25255 chr15 HAVANA gene 84422618 84425882 1212.0 + 0 ENSG00000259774.1 lincRNA AC243562.3 2 OTTHUMG00000172441.1 +25256 chr15 ENSEMBL gene 84467901 84468147 247.0 + 0 ENSG00000278785.1 misc_RNA RF00017 3 +25257 chr15 HAVANA gene 84491480 84500599 204.0 - 0 ENSG00000197627.3 unprocessed_pseudogene UBE2Q2P12 1 OTTHUMG00000148661.1 pseudo_consens +25258 chr15 HAVANA gene 84500378 84502381 546.0 + 0 ENSG00000259551.1 lincRNA AC048382.4 2 OTTHUMG00000172442.1 +25259 chr15 HAVANA gene 84505463 84505495 33.0 + 0 ENSG00000259302.1 unprocessed_pseudogene AC048382.3 2 OTTHUMG00000172443.1 +25260 chr15 HAVANA gene 84507885 84516814 3899.0 - 0 ENSG00000230373.8 transcribed_unprocessed_pseudogene GOLGA6L5P 1 OTTHUMG00000148659.2 pseudo_consens,overlapping_locus +25261 chr15 HAVANA gene 84513241 84526949 492.0 - 0 ENSG00000259244.1 processed_transcript AC048382.2 2 OTTHUMG00000172444.1 overlapping_locus +25262 chr15 HAVANA gene 84526781 84571216 3008.0 - 0 ENSG00000189136.9 transcribed_unprocessed_pseudogene UBE2Q2P1 1 OTTHUMG00000148662.3 pseudo_consens,overlapping_locus +25263 chr15 HAVANA gene 84570649 84580175 3000.0 + 0 ENSG00000259728.5 transcribed_unprocessed_pseudogene LINC00933 2 OTTHUMG00000172445.1 +25264 chr15 HAVANA gene 84611689 84614969 1018.0 - 0 ENSG00000256278.1 antisense AC048382.1 2 OTTHUMG00000167913.1 +25265 chr15 HAVANA gene 84622015 84623237 1223.0 - 0 ENSG00000276278.1 antisense AC048382.6 2 OTTHUMG00000167914.1 +25266 chr15 HAVANA gene 84600986 84627796 4878.0 + 0 ENSG00000176371.13 protein_coding ZSCAN2 1 OTTHUMG00000074027.5 +25267 chr15 HAVANA gene 84597809 84633987 3667.0 - 0 ENSG00000275120.2 antisense AC048382.5 2 OTTHUMG00000191692.1 +25268 chr15 HAVANA gene 84633874 84634635 762.0 + 0 ENSG00000254779.4 transcribed_processed_pseudogene EGLN1P1 1 OTTHUMG00000166918.3 pseudo_consens,overlapping_locus +25269 chr15 ENSEMBL gene 84642487 84642763 277.0 - 0 ENSG00000277578.1 misc_RNA RF00017 3 +25270 chr15 HAVANA gene 84631451 84647478 10717.0 + 0 ENSG00000176700.20 transcribed_unprocessed_pseudogene SCAND2P 1 OTTHUMG00000166569.6 pseudo_consens,overlapping_locus +25271 chr15 HAVANA gene 84639281 84654343 9626.0 - 0 ENSG00000177082.12 protein_coding WDR73 2 OTTHUMG00000172375.2 ncRNA_host +25272 chr15 HAVANA gene 84655129 84658563 1022.0 - 0 ENSG00000197696.9 protein_coding NMB 2 OTTHUMG00000148666.1 +25273 chr15 HAVANA gene 84685884 84686946 487.0 + 0 ENSG00000259654.1 antisense AC115102.1 2 OTTHUMG00000172501.1 +25274 chr15 HAVANA gene 84669538 84716716 5748.0 - 0 ENSG00000140612.13 protein_coding SEC11A 1 OTTHUMG00000172489.4 +25275 chr15 HAVANA gene 84717474 84746837 1711.0 - 0 ENSG00000285667.1 lincRNA AC012291.2 2 OTTHUMG00000192746.1 +25276 chr15 HAVANA gene 84753122 84754502 429.0 + 0 ENSG00000259415.1 sense_intronic AC012291.1 2 OTTHUMG00000172491.1 overlapping_locus +25277 chr15 HAVANA gene 84748635 84806432 8134.0 + 0 ENSG00000166716.9 protein_coding ZNF592 2 OTTHUMG00000172490.3 overlapping_locus +25278 chr15 ENSEMBL gene 84852498 84852615 118.0 - 0 ENSG00000200991.1 snoRNA RF00402 3 +25279 chr15 HAVANA gene 84816680 84873482 10940.0 + 0 ENSG00000136383.6 protein_coding ALPK3 2 OTTHUMG00000148667.2 +25280 chr15 ENSEMBL gene 84938416 84938522 107.0 - 0 ENSG00000207037.1 snRNA RNU6-339P 3 +25281 chr15 ENSEMBL gene 84939617 84939723 107.0 - 0 ENSG00000212388.1 snRNA RNU6-796P 3 +25282 chr15 HAVANA gene 84940504 84941133 630.0 - 0 ENSG00000271044.1 processed_pseudogene AC087468.1 1 OTTHUMG00000184835.1 pseudo_consens +25283 chr15 HAVANA gene 84884654 84945796 3445.0 + 0 ENSG00000156222.11 protein_coding SLC28A1 2 OTTHUMG00000148668.3 +25284 chr15 HAVANA gene 84980440 85139145 7886.0 + 0 ENSG00000073417.14 protein_coding PDE8A 2 OTTHUMG00000148670.4 +25285 chr15 HAVANA gene 85178628 85178806 179.0 - 0 ENSG00000259270.1 processed_pseudogene AC044860.2 2 OTTHUMG00000172139.1 +25286 chr15 HAVANA gene 85181210 85182083 874.0 - 0 ENSG00000259449.1 processed_pseudogene NIFKP8 1 OTTHUMG00000172140.1 pseudo_consens +25287 chr15 ENSEMBL gene 85210053 85210299 247.0 - 0 ENSG00000277582.1 misc_RNA RN7SL428P 3 +25288 chr15 HAVANA gene 85191438 85213905 11495.0 + 0 ENSG00000259295.6 transcribed_unprocessed_pseudogene CSPG4P12 2 OTTHUMG00000172141.1 +25289 chr15 HAVANA gene 85180200 85234795 2972.0 - 0 ENSG00000229212.8 transcribed_unprocessed_pseudogene AC044860.1 2 OTTHUMG00000172142.2 +25290 chr15 HAVANA gene 85240472 85247170 1679.0 + 0 ENSG00000188388.10 unprocessed_pseudogene GOLGA6L3 1 OTTHUMG00000163478.1 pseudo_consens +25291 chr15 HAVANA gene 85272527 85272974 368.0 + 0 ENSG00000259317.1 unprocessed_pseudogene AC044860.3 2 OTTHUMG00000172148.1 +25292 chr15 HAVANA gene 85255369 85330334 5516.0 - 0 ENSG00000218052.5 transcribed_unprocessed_pseudogene ADAMTS7P4 1 OTTHUMG00000172143.2 +25293 chr15 ENSEMBL gene 85380596 85380662 67.0 + 0 ENSG00000284160.1 miRNA MIR7706 3 +25294 chr15 ENSEMBL gene 85389823 85389884 62.0 - 0 ENSG00000251891.1 snRNA RNU7-79P 3 +25295 chr15 HAVANA gene 85415228 85415633 406.0 + 0 ENSG00000259630.2 transcribed_processed_pseudogene AC104046.1 1 OTTHUMG00000172209.2 pseudo_consens,overlapping_locus +25296 chr15 HAVANA gene 85579046 85580178 953.0 - 0 ENSG00000259375.1 antisense AC087286.3 2 OTTHUMG00000172210.1 +25297 chr15 HAVANA gene 85621264 85627689 568.0 - 0 ENSG00000259276.1 antisense AC087286.1 2 OTTHUMG00000172212.1 overlapping_locus +25298 chr15 ENSEMBL gene 85651522 85651628 107.0 - 0 ENSG00000202081.1 snRNA RNU6-1280P 3 +25299 chr15 HAVANA gene 85619623 85670948 660.0 - 0 ENSG00000259367.1 antisense AC087286.2 2 OTTHUMG00000172211.1 ncRNA_host,overlapping_locus +25300 chr15 HAVANA gene 85701109 85702771 746.0 + 0 ENSG00000259453.1 sense_intronic AC087286.4 2 OTTHUMG00000172206.1 overlapping_locus +25301 chr15 HAVANA gene 85726115 85727227 569.0 - 0 ENSG00000259544.1 antisense AC021739.4 2 OTTHUMG00000172213.1 +25302 chr15 HAVANA gene 85380571 85749358 20280.0 + 0 ENSG00000170776.21 protein_coding AKAP13 1 OTTHUMG00000172205.3 ncRNA_host,overlapping_locus +25303 chr15 HAVANA gene 85744109 85750281 964.0 - 0 ENSG00000259407.1 antisense AC021739.2 2 OTTHUMG00000172214.1 +25304 chr15 HAVANA gene 85750336 85752901 494.0 - 0 ENSG00000259762.1 antisense AC021739.5 2 OTTHUMG00000172215.1 +25305 chr15 HAVANA gene 85754941 85756237 855.0 - 0 ENSG00000259416.2 antisense AC021739.3 2 OTTHUMG00000172216.2 +25306 chr15 ENSEMBL gene 85770496 85770578 83.0 - 0 ENSG00000221634.1 miRNA MIR1276 3 +25307 chr15 HAVANA gene 85770990 85771163 174.0 + 0 ENSG00000259195.1 processed_pseudogene AC021739.1 2 OTTHUMG00000172217.1 +25308 chr15 HAVANA gene 85759323 85795030 7219.0 - 0 ENSG00000183655.12 protein_coding KLHL25 2 OTTHUMG00000148672.3 ncRNA_host +25309 chr15 ENSEMBL gene 85821855 85821957 103.0 + 0 ENSG00000252931.1 snRNA RNU6-231P 3 +25310 chr15 ENSEMBL gene 85825635 85825730 96.0 + 0 ENSG00000264406.1 miRNA MIR548AP 3 +25311 chr15 HAVANA gene 85958717 85958971 255.0 - 0 ENSG00000259608.1 processed_pseudogene AC104229.1 1 OTTHUMG00000172156.1 pseudo_consens +25312 chr15 HAVANA gene 86078809 86116717 1992.0 - 0 ENSG00000260477.7 antisense LINC01584 2 OTTHUMG00000172870.3 +25313 chr15 ENSEMBL gene 86138269 86138379 111.0 - 0 ENSG00000252964.1 rRNA_pseudogene RNA5SP400 3 +25314 chr15 HAVANA gene 86139838 86140240 403.0 - 0 ENSG00000261077.1 processed_pseudogene AC016180.1 1 OTTHUMG00000172871.1 pseudo_consens +25315 chr15 ENSEMBL gene 86173198 86173270 73.0 - 0 ENSG00000200206.1 snoRNA RF00284 3 +25316 chr15 HAVANA gene 86295649 86317173 2440.0 - 0 ENSG00000260125.1 antisense AGBL1-AS1 2 OTTHUMG00000172872.1 +25317 chr15 HAVANA gene 86630266 86631136 499.0 - 0 ENSG00000259734.1 antisense AC012229.1 2 OTTHUMG00000171963.1 +25318 chr15 HAVANA gene 86932880 86946331 351.0 + 0 ENSG00000259636.1 sense_intronic AC016987.2 2 OTTHUMG00000171909.1 overlapping_locus +25319 chr15 HAVANA gene 86938797 86988426 499.0 - 0 ENSG00000259620.1 antisense AC016987.1 2 OTTHUMG00000171910.1 +25320 chr15 HAVANA gene 86079973 87029052 13580.0 + 0 ENSG00000273540.3 protein_coding AGBL1 2 OTTHUMG00000149978.7 overlapping_locus +25321 chr15 HAVANA gene 87042054 87047161 509.0 + 0 ENSG00000259761.1 lincRNA AC078905.1 2 OTTHUMG00000171911.1 +25322 chr15 ENSEMBL gene 87474183 87474289 107.0 - 0 ENSG00000207150.1 snRNA RNU6-185P 3 +25323 chr15 HAVANA gene 87576929 87579866 1966.0 + 0 ENSG00000259527.2 lincRNA LINC00052 2 OTTHUMG00000171964.2 +25324 chr15 HAVANA gene 87432058 87703852 448.0 - 0 ENSG00000259560.1 lincRNA AC020687.1 2 OTTHUMG00000171973.1 ncRNA_host +25325 chr15 HAVANA gene 88143935 88144165 231.0 - 0 ENSG00000259183.1 processed_pseudogene MED28P6 2 OTTHUMG00000171833.1 overlapping_locus +25326 chr15 HAVANA gene 87859751 88256768 26750.0 - 0 ENSG00000140538.16 protein_coding NTRK3 1 OTTHUMG00000148677.12 overlapping_locus +25327 chr15 HAVANA gene 88252730 88271066 2663.0 + 0 ENSG00000260305.1 lincRNA NTRK3-AS1 2 OTTHUMG00000173016.1 +25328 chr15 HAVANA gene 88459476 88467419 6432.0 - 0 ENSG00000259494.1 protein_coding MRPL46 1 OTTHUMG00000148683.3 overlapping_locus +25329 chr15 HAVANA gene 88477871 88478387 517.0 - 0 ENSG00000279945.1 TEC AC013489.3 2 OTTHUMG00000176606.1 overlapping_locus +25330 chr15 HAVANA gene 88467453 88480773 5625.0 + 0 ENSG00000181991.15 protein_coding MRPS11 2 OTTHUMG00000148678.4 +25331 chr15 HAVANA gene 88459501 88546585 3272.0 - 0 ENSG00000173867.10 protein_coding AC013489.1 2 OTTHUMG00000185776.2 overlapping_locus +25332 chr15 HAVANA gene 88494440 88546675 6853.0 - 0 ENSG00000140543.14 protein_coding DET1 2 OTTHUMG00000171851.5 overlapping_locus +25333 chr15 HAVANA gene 88568287 88568562 276.0 + 0 ENSG00000259569.2 processed_pseudogene AC013489.2 2 OTTHUMG00000172505.2 +25334 chr15 HAVANA gene 88585566 88605110 2190.0 - 0 ENSG00000249487.6 lincRNA LINC01586 2 OTTHUMG00000171852.2 +25335 chr15 ENSEMBL gene 88608107 88608197 91.0 + 0 ENSG00000221630.3 miRNA MIR1179 3 +25336 chr15 ENSEMBL gene 88611847 88611924 78.0 - 0 ENSG00000283484.1 miRNA MIR3529 3 +25337 chr15 ENSEMBL gene 88611825 88611934 110.0 + 0 ENSG00000207703.1 miRNA MIR7-2 3 +25338 chr15 HAVANA gene 88621296 88632282 6018.0 + 0 ENSG00000181026.14 protein_coding AEN 2 OTTHUMG00000148681.6 +25339 chr15 HAVANA gene 88636153 88656483 7363.0 + 0 ENSG00000172183.14 protein_coding ISG20 1 OTTHUMG00000148679.3 +25340 chr15 HAVANA gene 88797413 88798734 571.0 - 0 ENSG00000259676.1 lincRNA AC103982.1 2 OTTHUMG00000172506.1 +25341 chr15 HAVANA gene 88803442 88875354 10909.0 + 0 ENSG00000157766.16 protein_coding ACAN 1 OTTHUMG00000171989.5 +25342 chr15 HAVANA gene 88877288 88895626 3524.0 - 0 ENSG00000140511.11 protein_coding HAPLN3 1 OTTHUMG00000148680.5 +25343 chr15 HAVANA gene 88898683 88913411 6837.0 - 0 ENSG00000140545.14 protein_coding MFGE8 1 OTTHUMG00000148682.8 +25344 chr15 HAVANA gene 88952683 88953460 470.0 + 0 ENSG00000259350.2 processed_pseudogene AC067805.1 2 OTTHUMG00000172507.2 +25345 chr15 HAVANA gene 88960070 88961046 977.0 + 0 ENSG00000259489.2 processed_pseudogene KRT18P47 1 OTTHUMG00000171974.2 pseudo_consens +25346 chr15 HAVANA gene 88989519 88990245 727.0 - 0 ENSG00000261549.2 processed_pseudogene AC107954.1 1 OTTHUMG00000176608.2 pseudo_consens +25347 chr15 HAVANA gene 89037977 89038286 310.0 - 0 ENSG00000260275.1 processed_pseudogene AC013565.2 1 OTTHUMG00000172880.1 pseudo_consens +25348 chr15 HAVANA gene 89041223 89082819 597.0 + 0 ENSG00000260123.1 lincRNA AC013565.1 2 OTTHUMG00000172881.1 +25349 chr15 HAVANA gene 89087078 89088267 644.0 - 0 ENSG00000261407.1 antisense AC013565.3 2 OTTHUMG00000172882.1 +25350 chr15 ENSEMBL gene 89120779 89120840 62.0 + 0 ENSG00000239151.1 snRNA RNU7-195P 3 +25351 chr15 HAVANA gene 89135547 89136495 949.0 - 0 ENSG00000259699.2 processed_pseudogene HMGB1P8 1 OTTHUMG00000171990.2 pseudo_consens +25352 chr15 HAVANA gene 89201091 89201768 678.0 - 0 ENSG00000259948.2 processed_pseudogene AC124068.1 2 OTTHUMG00000172883.2 +25353 chr15 HAVANA gene 89087459 89202360 10345.0 + 0 ENSG00000140526.17 protein_coding ABHD2 2 OTTHUMG00000148684.5 ncRNA_host +25354 chr15 HAVANA gene 89209869 89221751 1985.0 - 0 ENSG00000140522.11 protein_coding RLBP1 2 OTTHUMG00000172884.1 +25355 chr15 HAVANA gene 89243949 89317261 7766.0 + 0 ENSG00000140525.17 protein_coding FANCI 1 OTTHUMG00000132993.7 +25356 chr15 ENSEMBL gene 89326739 89326810 72.0 - 0 ENSG00000275101.1 miRNA MIR6766 3 +25357 chr15 HAVANA gene 89305198 89334861 5980.0 - 0 ENSG00000140521.13 protein_coding POLG 2 OTTHUMG00000149646.9 ncRNA_host +25358 chr15 HAVANA gene 89335053 89336161 1109.0 + 0 ENSG00000261441.1 antisense AC124068.2 2 OTTHUMG00000172885.2 +25359 chr15 HAVANA gene 89358841 89360377 1537.0 + 0 ENSG00000279708.1 TEC AC133637.1 2 OTTHUMG00000173068.1 +25360 chr15 ENSEMBL gene 89368017 89368106 90.0 + 0 ENSG00000284329.1 miRNA MIR9-3 3 +25361 chr15 HAVANA gene 89361579 89398487 7265.0 + 0 ENSG00000255571.8 lincRNA MIR9-3HG 2 OTTHUMG00000171992.6 ncRNA_host +25362 chr15 HAVANA gene 89471398 89496613 2607.0 - 0 ENSG00000140519.13 protein_coding RHCG 2 OTTHUMG00000149647.7 +25363 chr15 HAVANA gene 89508961 89510416 1456.0 + 0 ENSG00000261478.1 lincRNA AC013391.3 2 OTTHUMG00000173032.1 +25364 chr15 HAVANA gene 89505277 89524034 1487.0 - 0 ENSG00000259218.5 lincRNA LINC00928 2 OTTHUMG00000172014.2 +25365 chr15 HAVANA gene 89579765 89582297 459.0 - 0 ENSG00000259615.1 antisense AC013391.1 2 OTTHUMG00000172015.1 +25366 chr15 HAVANA gene 89518523 89591956 501.0 + 0 ENSG00000259713.1 sense_overlapping AC013391.2 2 OTTHUMG00000171993.1 overlapping_locus +25367 chr15 HAVANA gene 89575482 89631056 8402.0 + 0 ENSG00000140534.13 protein_coding TICRR 1 OTTHUMG00000149648.5 overlapping_locus +25368 chr15 HAVANA gene 89608789 89655451 5001.0 - 0 ENSG00000166813.14 protein_coding KIF7 2 OTTHUMG00000157177.3 +25369 chr15 HAVANA gene 89664365 89679427 3797.0 - 0 ENSG00000166819.11 protein_coding PLIN1 2 OTTHUMG00000149813.4 overlapping_locus +25370 chr15 HAVANA gene 89687937 89688243 307.0 - 0 ENSG00000241362.2 processed_pseudogene RPL36AP43 1 OTTHUMG00000158054.3 pseudo_consens,overlapping_locus +25371 chr15 HAVANA gene 89677764 89690783 3171.0 - 0 ENSG00000166821.8 protein_coding PEX11A 1 OTTHUMG00000149809.5 overlapping_locus +25372 chr15 HAVANA gene 89704665 89705415 449.0 + 0 ENSG00000259561.1 sense_intronic AC079075.1 2 OTTHUMG00000172008.1 overlapping_locus +25373 chr15 ENSEMBL gene 89714232 89714338 107.0 + 0 ENSG00000206590.1 snRNA RNU6-132P 3 +25374 chr15 HAVANA gene 89690797 89743638 4068.0 + 0 ENSG00000140527.14 protein_coding WDR93 2 OTTHUMG00000172007.3 ncRNA_host,overlapping_locus +25375 chr15 HAVANA gene 89748661 89751310 2369.0 - 0 ENSG00000166823.5 protein_coding MESP1 2 OTTHUMG00000149810.2 +25376 chr15 HAVANA gene 89752296 89753493 878.0 + 0 ENSG00000259441.2 processed_pseudogene MRPL15P1 1 OTTHUMG00000172017.4 pseudo_consens +25377 chr15 HAVANA gene 89760591 89778754 1783.0 + 0 ENSG00000188095.5 protein_coding MESP2 2 OTTHUMG00000172016.3 +25378 chr15 HAVANA gene 89784889 89815401 4871.0 - 0 ENSG00000166825.13 protein_coding ANPEP 2 OTTHUMG00000149814.8 +25379 chr15 ENSEMBL gene 89850637 89850721 85.0 - 0 ENSG00000264966.1 miRNA MIR5094 3 +25380 chr15 HAVANA gene 89876540 89877285 746.0 + 0 ENSG00000259677.1 processed_pseudogene AC027176.2 1 OTTHUMG00000172018.2 pseudo_consens +25381 chr15 ENSEMBL gene 89883931 89884030 100.0 - 0 ENSG00000264796.1 miRNA MIR5009 3 +25382 chr15 ENSEMBL gene 89886485 89886591 107.0 - 0 ENSG00000212420.1 snRNA RNU6-1111P 3 +25383 chr15 HAVANA gene 89830599 89894638 9237.0 - 0 ENSG00000157823.16 protein_coding AP3S2 2 OTTHUMG00000149811.4 ncRNA_host,overlapping_locus +25384 chr15 ENSEMBL gene 89897576 89897637 62.0 + 0 ENSG00000252645.1 snRNA RNU7-111P 3 +25385 chr15 HAVANA gene 89834308 89912882 2673.0 - 0 ENSG00000250021.7 protein_coding C15orf38-AP3S2 1 OTTHUMG00000162161.5 ncRNA_host,overlapping_locus +25386 chr15 HAVANA gene 89895006 89912956 8594.0 - 0 ENSG00000242498.7 protein_coding ARPIN 1 OTTHUMG00000154515.4 overlapping_locus +25387 chr15 HAVANA gene 89936492 89937005 514.0 + 0 ENSG00000259273.1 processed_pseudogene AC027176.1 2 OTTHUMG00000172019.2 +25388 chr15 HAVANA gene 89950760 89951345 586.0 + 0 ENSG00000280377.1 TEC AC027176.3 2 OTTHUMG00000173132.1 +25389 chr15 ENSEMBL gene 90006755 90006841 87.0 + 0 ENSG00000265871.1 miRNA MIR3174 3 +25390 chr15 HAVANA gene 90024955 90026003 1049.0 + 0 ENSG00000273691.1 sense_intronic AC087284.1 2 OTTHUMG00000172202.1 overlapping_locus +25391 chr15 ENSEMBL gene 90076424 90076486 63.0 + 0 ENSG00000276376.1 snRNA RF00066 3 +25392 chr15 HAVANA gene 90001392 90082206 4936.0 + 0 ENSG00000140548.9 protein_coding ZNF710 2 OTTHUMG00000149812.4 ncRNA_host,overlapping_locus +25393 chr15 HAVANA gene 90074512 90082207 2902.0 - 0 ENSG00000259291.2 antisense ZNF710-AS1 2 OTTHUMG00000172032.2 +25394 chr15 HAVANA gene 90083045 90102504 2814.0 - 0 ENSG00000182054.9 protein_coding IDH2 1 OTTHUMG00000149815.2 +25395 chr15 HAVANA gene 90102649 90133445 355.0 + 0 ENSG00000259685.2 lincRNA IDH2-DT 2 OTTHUMG00000172203.2 +25396 chr15 ENSEMBL gene 90166233 90166526 294.0 + 0 ENSG00000240470.3 misc_RNA RN7SL346P 3 +25397 chr15 HAVANA gene 90206572 90206967 396.0 + 0 ENSG00000225193.5 transcribed_processed_pseudogene RPS12P26 1 OTTHUMG00000158056.4 pseudo_consens,overlapping_locus +25398 chr15 HAVANA gene 90160604 90229679 7006.0 + 0 ENSG00000185033.14 protein_coding SEMA4B 1 OTTHUMG00000172096.6 ncRNA_host,overlapping_locus +25399 chr15 HAVANA gene 90229975 90234047 1367.0 - 0 ENSG00000185043.11 protein_coding CIB1 2 OTTHUMG00000149808.3 +25400 chr15 HAVANA gene 90233808 90245811 5778.0 + 0 ENSG00000183208.12 protein_coding GDPGP1 2 OTTHUMG00000172128.5 overlapping_locus +25401 chr15 HAVANA gene 90234200 90265462 4014.0 + 0 ENSG00000284626.1 protein_coding AC091167.7 2 OTTHUMG00000192216.1 overlapping_locus +25402 chr15 HAVANA gene 90249530 90265482 3902.0 + 0 ENSG00000213471.10 protein_coding TTLL13P 2 OTTHUMG00000177210.4 overlapping_locus +25403 chr15 HAVANA gene 90249556 90272208 3838.0 + 0 ENSG00000261147.1 protein_coding AC091167.2 2 OTTHUMG00000177211.1 overlapping_locus +25404 chr15 HAVANA gene 90275129 90275716 588.0 + 0 ENSG00000228998.4 transcribed_processed_pseudogene AC091167.1 2 OTTHUMG00000177212.2 overlapping_locus +25405 chr15 HAVANA gene 90265659 90278141 7694.0 + 0 ENSG00000182768.8 protein_coding NGRN 2 OTTHUMG00000149807.3 overlapping_locus +25406 chr15 HAVANA gene 90281848 90282031 184.0 - 0 ENSG00000270322.1 unprocessed_pseudogene AC091167.3 2 OTTHUMG00000184838.1 +25407 chr15 HAVANA gene 90281858 90282270 413.0 + 0 ENSG00000275345.1 lincRNA AC091167.5 2 OTTHUMG00000187008.1 overlapping_locus +25408 chr15 HAVANA gene 90284376 90285580 894.0 - 0 ENSG00000271396.1 processed_pseudogene AC091167.4 1 OTTHUMG00000184839.1 pseudo_consens +25409 chr15 ENSEMBL gene 90293939 90294207 269.0 + 0 ENSG00000275803.1 misc_RNA RN7SL736P 3 +25410 chr15 HAVANA gene 90291962 90295683 779.0 + 0 ENSG00000214433.4 transcribed_unprocessed_pseudogene GOLGA2P8 1 OTTHUMG00000163474.1 pseudo_consens,overlapping_locus +25411 chr15 HAVANA gene 90266317 90314499 518.0 + 0 ENSG00000275674.1 protein_coding AC091167.6 2 OTTHUMG00000189108.1 ncRNA_host,overlapping_locus +25412 chr15 HAVANA gene 90348844 90349197 354.0 - 0 ENSG00000238244.3 processed_pseudogene GABARAPL3 1 OTTHUMG00000189344.1 pseudo_consens +25413 chr15 HAVANA gene 90347587 90349437 1851.0 + 0 ENSG00000279980.1 TEC AC018946.2 2 OTTHUMG00000177213.1 +25414 chr15 HAVANA gene 90352245 90369146 8511.0 + 0 ENSG00000196391.10 protein_coding ZNF774 1 OTTHUMG00000172359.3 +25415 chr15 HAVANA gene 90385814 90386063 250.0 + 0 ENSG00000259262.1 processed_pseudogene NDUFA3P4 1 OTTHUMG00000172360.2 pseudo_consens +25416 chr15 HAVANA gene 90393490 90397881 458.0 - 0 ENSG00000259177.1 antisense AC018946.1 2 OTTHUMG00000172361.1 +25417 chr15 HAVANA gene 90388218 90502243 11535.0 + 0 ENSG00000140575.12 protein_coding IQGAP1 2 OTTHUMG00000149832.5 +25418 chr15 HAVANA gene 90595840 90596447 474.0 - 0 ENSG00000259212.1 antisense AC103739.1 2 OTTHUMG00000172333.1 +25419 chr15 HAVANA gene 90604225 90614558 807.0 - 0 ENSG00000259314.1 antisense AC103739.2 2 OTTHUMG00000172334.1 +25420 chr15 HAVANA gene 90630535 90631755 888.0 - 0 ENSG00000285560.1 antisense AC103739.3 2 OTTHUMG00000193045.1 overlapping_locus +25421 chr15 HAVANA gene 90634725 90635033 309.0 + 0 ENSG00000259746.1 processed_pseudogene HSPE1P3 1 OTTHUMG00000172336.1 pseudo_consens,overlapping_locus +25422 chr15 HAVANA gene 90529925 90645345 10814.0 + 0 ENSG00000140577.15 protein_coding CRTC3 1 OTTHUMG00000172295.4 overlapping_locus +25423 chr15 HAVANA gene 90650631 90651103 473.0 + 0 ENSG00000278370.1 lincRNA AC021422.1 2 OTTHUMG00000187011.1 +25424 chr15 HAVANA gene 90660234 90664967 1295.0 + 0 ENSG00000245479.2 sense_overlapping LINC01585 2 OTTHUMG00000172362.1 +25425 chr15 HAVANA gene 90620007 90717141 957.0 - 0 ENSG00000259736.1 antisense CRTC3-AS1 2 OTTHUMG00000172335.1 +25426 chr15 ENSEMBL gene 90755243 90755312 70.0 - 0 ENSG00000200677.1 snoRNA RF00093 3 +25427 chr15 HAVANA gene 90717327 90816165 6551.0 + 0 ENSG00000197299.11 protein_coding BLM 1 OTTHUMG00000149834.6 +25428 chr15 HAVANA gene 90839724 90841378 402.0 + 0 ENSG00000259704.1 sense_overlapping AC124248.1 2 OTTHUMG00000172372.1 +25429 chr15 ENSEMBL gene 90855935 90856207 273.0 - 0 ENSG00000241869.3 misc_RNA RN7SL363P 3 +25430 chr15 HAVANA gene 90868592 90883458 4728.0 + 0 ENSG00000140564.11 protein_coding FURIN 2 OTTHUMG00000149831.3 +25431 chr15 HAVANA gene 90883695 90895776 4237.0 + 0 ENSG00000182511.11 protein_coding FES 2 OTTHUMG00000044456.7 +25432 chr15 HAVANA gene 90920218 90921186 795.0 - 0 ENSG00000259661.1 antisense AC068831.4 2 OTTHUMG00000172402.1 +25433 chr15 HAVANA gene 90902218 90922584 10002.0 + 0 ENSG00000196547.14 protein_coding MAN2A2 1 OTTHUMG00000172385.14 +25434 chr15 HAVANA gene 90929964 90935196 5233.0 - 0 ENSG00000184508.11 protein_coding HDDC3 2 OTTHUMG00000141260.6 +25435 chr15 HAVANA gene 90930180 90954093 7498.0 + 0 ENSG00000140553.17 protein_coding UNC45A 2 OTTHUMG00000141261.5 +25436 chr15 HAVANA gene 90952239 90955225 1858.0 - 0 ENSG00000258384.1 antisense AC068831.1 2 OTTHUMG00000171683.1 +25437 chr15 HAVANA gene 90954870 90963125 4969.0 + 0 ENSG00000166965.12 protein_coding RCCD1 1 OTTHUMG00000171684.3 +25438 chr15 ENSEMBL gene 90977208 90977305 98.0 - 0 ENSG00000200142.1 misc_RNA RF00019 3 +25439 chr15 HAVANA gene 90966345 90988624 1799.0 + 0 ENSG00000258725.1 antisense PRC1-AS1 2 OTTHUMG00000171686.1 +25440 chr15 HAVANA gene 90966038 90995629 5525.0 - 0 ENSG00000198901.13 protein_coding PRC1 1 OTTHUMG00000171685.7 ncRNA_host,overlapping_locus +25441 chr15 HAVANA gene 90966190 91022566 7148.0 - 0 ENSG00000284946.1 protein_coding AC068831.7 2 OTTHUMG00000192506.1 ncRNA_host,overlapping_locus +25442 chr15 HAVANA gene 90998416 91022603 4012.0 - 0 ENSG00000184056.14 protein_coding VPS33B 2 OTTHUMG00000149835.5 overlapping_locus +25443 chr15 HAVANA gene 91022766 91023200 435.0 + 0 ENSG00000278514.1 lincRNA AC068831.6 2 OTTHUMG00000187012.1 overlapping_locus +25444 chr15 HAVANA gene 91029888 91029996 109.0 + 0 ENSG00000258542.1 transcribed_processed_pseudogene AC068831.2 2 OTTHUMG00000171688.1 overlapping_locus +25445 chr15 HAVANA gene 91031246 91031691 363.0 - 0 ENSG00000275929.1 unprocessed_pseudogene AC068831.5 2 OTTHUMG00000187873.1 +25446 chr15 HAVANA gene 91031712 91032435 328.0 - 0 ENSG00000258665.1 unprocessed_pseudogene AC068831.3 2 OTTHUMG00000171689.1 +25447 chr15 HAVANA gene 91022619 91036611 3429.0 + 0 ENSG00000214432.9 antisense VPS33B-DT 2 OTTHUMG00000171687.2 overlapping_locus +25448 chr15 HAVANA gene 91094847 91099838 2017.0 - 0 ENSG00000285661.1 lincRNA AC127520.1 2 OTTHUMG00000192672.1 +25449 chr15 HAVANA gene 91099950 91301309 12454.0 + 0 ENSG00000185518.11 protein_coding SV2B 2 OTTHUMG00000149833.4 +25450 chr15 HAVANA gene 91303756 91306321 1002.0 + 0 ENSG00000285883.1 lincRNA AC123784.1 2 OTTHUMG00000192888.1 +25451 chr15 HAVANA gene 91532891 91535095 431.0 + 0 ENSG00000258954.1 lincRNA AC107958.3 2 OTTHUMG00000171694.1 overlapping_locus +25452 chr15 HAVANA gene 91408708 91605211 2609.0 + 0 ENSG00000258551.5 lincRNA CRAT37 2 OTTHUMG00000171693.1 overlapping_locus +25453 chr15 HAVANA gene 91643017 91649114 592.0 - 0 ENSG00000258765.1 lincRNA AC107958.2 2 OTTHUMG00000171695.1 +25454 chr15 HAVANA gene 91676771 91677060 290.0 + 0 ENSG00000258540.1 processed_pseudogene AC107958.1 1 OTTHUMG00000171696.1 pseudo_consens +25455 chr15 HAVANA gene 91742841 91743955 1115.0 - 0 ENSG00000259057.1 processed_pseudogene AC105109.1 1 OTTHUMG00000171697.1 pseudo_consens +25456 chr15 HAVANA gene 91853695 92172435 9435.0 + 0 ENSG00000176463.13 protein_coding SLCO3A1 1 OTTHUMG00000149846.5 +25457 chr15 HAVANA gene 92162798 92172436 539.0 - 0 ENSG00000258761.1 antisense AC116903.1 2 OTTHUMG00000171700.1 overlapping_locus +25458 chr15 HAVANA gene 92281484 92282084 601.0 + 0 ENSG00000258726.1 processed_pseudogene DUXAP6 1 OTTHUMG00000171701.1 pseudo_consens +25459 chr15 HAVANA gene 92285841 92286678 838.0 + 0 ENSG00000258925.2 processed_pseudogene NPM1P5 1 OTTHUMG00000171702.2 pseudo_consens +25460 chr15 HAVANA gene 92148752 92331037 1304.0 - 0 ENSG00000260661.1 antisense AC116903.2 2 OTTHUMG00000177214.1 overlapping_locus +25461 chr15 ENSEMBL gene 92417547 92417689 143.0 + 0 ENSG00000239197.1 snoRNA RF01233 3 +25462 chr15 HAVANA gene 92420860 92422735 974.0 + 0 ENSG00000258739.1 transcribed_processed_pseudogene ENO1P2 1 OTTHUMG00000171740.1 pseudo_consens,overlapping_locus +25463 chr15 HAVANA gene 92393828 92468728 5903.0 + 0 ENSG00000140557.11 protein_coding ST8SIA2 2 OTTHUMG00000149843.4 ncRNA_host,overlapping_locus +25464 chr15 HAVANA gene 92470233 92471546 480.0 - 0 ENSG00000259170.1 lincRNA AC090985.1 2 OTTHUMG00000171741.1 +25465 chr15 HAVANA gene 92471654 92501117 1787.0 + 0 ENSG00000183643.4 lincRNA C15orf32 2 OTTHUMG00000149844.3 +25466 chr15 HAVANA gene 92567818 92572042 1657.0 - 0 ENSG00000258647.5 lincRNA LINC00930 2 OTTHUMG00000171742.1 +25467 chr15 HAVANA gene 92592574 92596462 3889.0 - 0 ENSG00000260337.3 processed_transcript AC091544.4 2 OTTHUMG00000173074.2 +25468 chr15 HAVANA gene 92580829 92600545 2194.0 + 0 ENSG00000258676.4 processed_transcript AC091544.2 2 OTTHUMG00000171743.2 +25469 chr15 HAVANA gene 92602910 92620015 446.0 + 0 ENSG00000271763.1 antisense AC091544.5 2 OTTHUMG00000185771.1 +25470 chr15 HAVANA gene 92627073 92627414 342.0 + 0 ENSG00000259064.2 processed_pseudogene AC091544.3 1 OTTHUMG00000171745.2 pseudo_consens +25471 chr15 HAVANA gene 92634305 92634665 361.0 + 0 ENSG00000275965.1 antisense AC091544.7 2 OTTHUMG00000187013.1 +25472 chr15 HAVANA gene 92711808 92712110 303.0 + 0 ENSG00000253954.3 processed_pseudogene HMGN1P38 2 OTTHUMG00000163610.2 +25473 chr15 HAVANA gene 92719393 92719740 348.0 + 0 ENSG00000240484.1 processed_pseudogene AC091544.1 1 OTTHUMG00000158063.1 pseudo_consens +25474 chr15 HAVANA gene 92699040 92724277 240.0 - 0 ENSG00000272298.1 processed_transcript AC091544.6 2 OTTHUMG00000185772.1 overlapping_locus +25475 chr15 HAVANA gene 92715710 92734195 790.0 - 0 ENSG00000258741.3 transcribed_processed_pseudogene H2AFVP1 1 OTTHUMG00000171746.3 pseudo_consens,overlapping_locus +25476 chr15 HAVANA gene 92762757 92763750 526.0 + 0 ENSG00000258562.2 processed_pseudogene AC106028.1 1 OTTHUMG00000171747.2 pseudo_consens +25477 chr15 HAVANA gene 92779757 92781492 1736.0 - 0 ENSG00000260361.1 sense_intronic AC106028.3 2 OTTHUMG00000173063.1 overlapping_locus +25478 chr15 HAVANA gene 92795647 92796439 793.0 + 0 ENSG00000258527.1 processed_pseudogene ASB9P1 1 OTTHUMG00000171749.1 pseudo_consens +25479 chr15 HAVANA gene 92805770 92808567 464.0 - 0 ENSG00000258922.1 sense_intronic AC106028.2 2 OTTHUMG00000171750.1 overlapping_locus +25480 chr15 HAVANA gene 92808451 92809057 607.0 + 0 ENSG00000274215.1 lincRNA AC106028.4 2 OTTHUMG00000187014.1 +25481 chr15 HAVANA gene 92617443 92809884 4657.0 - 0 ENSG00000185442.12 protein_coding FAM174B 2 OTTHUMG00000171744.4 overlapping_locus +25482 chr15 HAVANA gene 92819598 92819992 395.0 + 0 ENSG00000275175.1 lincRNA AC106028.5 2 OTTHUMG00000187015.1 +25483 chr15 HAVANA gene 92882707 92899701 5395.0 + 0 ENSG00000272888.6 processed_transcript LINC01578 2 OTTHUMG00000149845.9 overlapping_locus +25484 chr15 ENSEMBL gene 92904399 92904475 77.0 + 0 ENSG00000284324.1 miRNA MIR3175 3 +25485 chr15 HAVANA gene 92883413 92949230 4734.0 + 0 ENSG00000279765.3 protein_coding AC013394.1 2 OTTHUMG00000189505.3 ncRNA_host,overlapping_locus +25486 chr15 HAVANA gene 92900189 93028005 16960.0 + 0 ENSG00000173575.20 protein_coding CHD2 1 OTTHUMG00000185958.12 ncRNA_host,overlapping_locus +25487 chr15 HAVANA gene 93065586 93066606 1021.0 - 0 ENSG00000258611.2 transcribed_processed_pseudogene AC087641.1 1 OTTHUMG00000171782.2 pseudo_consens,overlapping_locus +25488 chr15 HAVANA gene 93035273 93089204 13141.0 - 0 ENSG00000182175.14 protein_coding RGMA 1 OTTHUMG00000171781.7 overlapping_locus +25489 chr15 HAVANA gene 93177269 93179999 2026.0 - 0 ENSG00000285663.1 lincRNA AC108457.1 2 OTTHUMG00000192842.1 +25490 chr15 HAVANA gene 93206066 93208048 1983.0 + 0 ENSG00000280076.1 TEC AC112693.3 2 OTTHUMG00000171783.1 +25491 chr15 HAVANA gene 93257198 93260475 682.0 + 0 ENSG00000258888.1 lincRNA AC112693.1 2 OTTHUMG00000171784.1 +25492 chr15 HAVANA gene 93301416 93301647 232.0 - 0 ENSG00000258971.1 processed_pseudogene AC112693.2 1 OTTHUMG00000171792.1 pseudo_consens +25493 chr15 HAVANA gene 93416850 93422576 2284.0 - 0 ENSG00000258909.1 lincRNA AC091078.3 2 OTTHUMG00000171793.1 +25494 chr15 HAVANA gene 93430659 93431217 559.0 - 0 ENSG00000258787.1 processed_pseudogene AC091078.2 1 OTTHUMG00000171794.1 pseudo_consens +25495 chr15 HAVANA gene 93312557 93569483 3677.0 + 0 ENSG00000257060.6 lincRNA AC091078.1 2 OTTHUMG00000171785.3 +25496 chr15 HAVANA gene 93589867 93760799 457.0 + 0 ENSG00000258631.2 lincRNA AC110023.1 2 OTTHUMG00000171795.2 +25497 chr15 HAVANA gene 93825058 93825159 102.0 - 0 ENSG00000258627.1 transcribed_processed_pseudogene AC103996.1 1 OTTHUMG00000171797.1 pseudo_consens,overlapping_locus +25498 chr15 HAVANA gene 93837611 93852981 442.0 - 0 ENSG00000259123.1 lincRNA AC103996.3 2 OTTHUMG00000171798.1 overlapping_locus +25499 chr15 HAVANA gene 93863109 93878356 1572.0 + 0 ENSG00000258476.5 lincRNA LINC02207 2 OTTHUMG00000171799.1 +25500 chr15 HAVANA gene 93882082 93886743 915.0 + 0 ENSG00000258831.1 lincRNA AC103996.2 2 OTTHUMG00000171800.1 +25501 chr15 HAVANA gene 93900701 93984150 1026.0 + 0 ENSG00000258785.5 lincRNA LINC01580 2 OTTHUMG00000171810.1 +25502 chr15 HAVANA gene 94033658 94034177 520.0 + 0 ENSG00000258895.1 processed_pseudogene AC104390.1 1 OTTHUMG00000171811.1 pseudo_consens +25503 chr15 HAVANA gene 93718542 94070820 6795.0 - 0 ENSG00000258754.7 lincRNA LINC01579 2 OTTHUMG00000171808.3 overlapping_locus +25504 chr15 HAVANA gene 93905405 94107938 3267.0 - 0 ENSG00000259724.1 lincRNA LINC01581 2 OTTHUMG00000172625.1 overlapping_locus +25505 chr15 HAVANA gene 94168349 94168751 403.0 + 0 ENSG00000258570.1 processed_pseudogene AC110027.1 1 OTTHUMG00000171812.1 pseudo_consens +25506 chr15 HAVANA gene 94273496 94274005 435.0 + 0 ENSG00000258632.2 processed_pseudogene AC135626.1 1 OTTHUMG00000171779.3 pseudo_consens,overlapping_locus +25507 chr15 HAVANA gene 94231538 94483952 12978.0 + 0 ENSG00000140563.14 protein_coding MCTP2 2 OTTHUMG00000171751.8 overlapping_locus +25508 chr15 HAVANA gene 94583506 94589259 775.0 - 0 ENSG00000285866.1 lincRNA AC009432.2 2 OTTHUMG00000193145.1 +25509 chr15 HAVANA gene 94600014 94600821 648.0 + 0 ENSG00000259331.1 lincRNA AC009432.1 2 OTTHUMG00000172481.1 +25510 chr15 HAVANA gene 94855586 94857011 475.0 - 0 ENSG00000270017.1 lincRNA AC107976.1 2 OTTHUMG00000183894.1 +25511 chr15 HAVANA gene 95034384 95035737 715.0 - 0 ENSG00000258433.1 lincRNA AC087633.1 2 OTTHUMG00000171816.1 +25512 chr15 HAVANA gene 95080095 95132859 573.0 - 0 ENSG00000258773.1 lincRNA AC087636.1 2 OTTHUMG00000171817.1 +25513 chr15 HAVANA gene 94841059 95169864 2453.0 + 0 ENSG00000277654.6 transcribed_processed_pseudogene AC087633.2 1 OTTHUMG00000187026.3 pseudo_consens +25514 chr15 HAVANA gene 95225326 95225864 539.0 - 0 ENSG00000273923.1 lincRNA AC104260.1 2 OTTHUMG00000187019.1 overlapping_locus +25515 chr15 HAVANA gene 95280753 95284249 3497.0 - 0 ENSG00000280304.1 TEC AC104260.2 2 OTTHUMG00000177231.1 overlapping_locus +25516 chr15 HAVANA gene 95287934 95291643 1545.0 + 0 ENSG00000285700.1 lincRNA AC104260.3 2 OTTHUMG00000192722.1 +25517 chr15 HAVANA gene 95209099 95327129 6992.0 - 0 ENSG00000248441.6 lincRNA LINC01197 2 OTTHUMG00000171818.2 overlapping_locus +25518 chr15 HAVANA gene 95463592 95493770 1057.0 - 0 ENSG00000258489.3 lincRNA AC027013.1 2 OTTHUMG00000171820.2 +25519 chr15 HAVANA gene 95326528 95507847 2792.0 + 0 ENSG00000259134.6 lincRNA LINC00924 2 OTTHUMG00000171819.2 +25520 chr15 ENSEMBL gene 95745804 95745994 191.0 + 0 ENSG00000222076.1 snRNA RNU2-3P 3 +25521 chr15 HAVANA gene 95638346 95825451 1382.0 + 0 ENSG00000275016.4 lincRNA AC015574.1 2 OTTHUMG00000187027.1 ncRNA_host +25522 chr15 HAVANA gene 96045341 96064357 1635.0 - 0 ENSG00000259702.3 lincRNA AC024337.1 2 OTTHUMG00000171837.3 +25523 chr15 HAVANA gene 96080713 96084584 2797.0 - 0 ENSG00000273771.1 lincRNA AC024337.2 2 OTTHUMG00000187028.1 +25524 chr15 HAVANA gene 96112628 96116051 3424.0 - 0 ENSG00000280048.1 TEC AC012409.5 2 OTTHUMG00000172931.1 overlapping_locus +25525 chr15 HAVANA gene 96139472 96140452 981.0 - 0 ENSG00000277135.1 lincRNA AC012409.3 2 OTTHUMG00000187032.1 overlapping_locus +25526 chr15 HAVANA gene 96171581 96174339 751.0 + 0 ENSG00000259359.1 lincRNA AC012409.1 2 OTTHUMG00000171853.1 overlapping_locus +25527 chr15 HAVANA gene 96230897 96231145 249.0 + 0 ENSG00000278146.1 lincRNA AC012409.4 2 OTTHUMG00000187029.1 overlapping_locus +25528 chr15 HAVANA gene 96235785 96237010 902.0 + 0 ENSG00000259763.2 lincRNA LINC02157 2 OTTHUMG00000171854.2 overlapping_locus +25529 chr15 HAVANA gene 96285068 96289265 4198.0 - 0 ENSG00000279645.1 TEC AC016251.1 2 OTTHUMG00000177232.1 overlapping_locus +25530 chr15 HAVANA gene 96294935 96298023 3089.0 - 0 ENSG00000280291.1 TEC AC016251.2 2 OTTHUMG00000177233.1 overlapping_locus +25531 chr15 HAVANA gene 95990582 96300990 751.0 + 0 ENSG00000275443.1 lincRNA AC012409.2 2 OTTHUMG00000187031.1 overlapping_locus +25532 chr15 HAVANA gene 96110040 96327361 6063.0 - 0 ENSG00000247809.7 antisense NR2F2-AS1 2 OTTHUMG00000171855.5 overlapping_locus +25533 chr15 ENSEMBL gene 96333261 96333307 47.0 + 0 ENSG00000283888.1 miRNA MIR1469 3 +25534 chr15 HAVANA gene 96325938 96340263 6459.0 + 0 ENSG00000185551.14 protein_coding NR2F2 2 OTTHUMG00000149848.6 ncRNA_host +25535 chr15 HAVANA gene 96342953 96345651 1133.0 + 0 ENSG00000275322.1 lincRNA AC103746.1 2 OTTHUMG00000187030.1 +25536 chr15 HAVANA gene 96388214 96389056 843.0 - 0 ENSG00000259614.2 processed_pseudogene AC087477.6 1 OTTHUMG00000171856.2 pseudo_consens +25537 chr15 HAVANA gene 96354237 96403803 5303.0 + 0 ENSG00000259275.2 lincRNA AC087477.2 2 OTTHUMG00000171847.2 +25538 chr15 HAVANA gene 96393146 96405189 812.0 - 0 ENSG00000259542.5 lincRNA AC087477.5 2 OTTHUMG00000171848.1 +25539 chr15 HAVANA gene 96441566 96442313 748.0 - 0 ENSG00000250825.1 processed_pseudogene PGAM1P12 1 OTTHUMG00000160134.1 pseudo_consens +25540 chr15 HAVANA gene 96438570 96444266 552.0 + 0 ENSG00000259312.1 lincRNA AC087477.3 2 OTTHUMG00000171857.1 +25541 chr15 HAVANA gene 96448154 96448493 340.0 + 0 ENSG00000242295.1 processed_pseudogene AC087477.1 1 OTTHUMG00000158067.1 pseudo_consens +25542 chr15 HAVANA gene 96448842 96449749 542.0 + 0 ENSG00000259534.1 lincRNA AC087477.4 2 OTTHUMG00000171858.1 +25543 chr15 ENSEMBL gene 96486582 96486891 310.0 + 0 ENSG00000222617.1 misc_RNA RN7SKP254 3 +25544 chr15 ENSEMBL gene 96496180 96496462 283.0 - 0 ENSG00000274079.1 misc_RNA RF00017 3 +25545 chr15 HAVANA gene 96551381 96551517 137.0 + 0 ENSG00000259340.2 processed_pseudogene AC110588.1 1 OTTHUMG00000171859.2 pseudo_consens +25546 chr15 HAVANA gene 96756987 96758596 1610.0 + 0 ENSG00000214424.5 processed_pseudogene FAM149B1P1 1 OTTHUMG00000165496.2 pseudo_consens +25547 chr15 HAVANA gene 96772005 96783312 627.0 - 0 ENSG00000259282.5 antisense SPATA8-AS1 2 OTTHUMG00000172033.1 +25548 chr15 HAVANA gene 96783389 96785615 1491.0 + 0 ENSG00000185594.5 protein_coding SPATA8 1 OTTHUMG00000149847.2 +25549 chr15 ENSEMBL gene 96842069 96842384 316.0 + 0 ENSG00000223120.1 misc_RNA RN7SKP181 3 +25550 chr15 HAVANA gene 97272177 97319288 454.0 - 0 ENSG00000259403.1 lincRNA AC020704.1 2 OTTHUMG00000172034.1 +25551 chr15 ENSEMBL gene 97353497 97353815 319.0 + 0 ENSG00000242863.3 misc_RNA RN7SL677P 3 +25552 chr15 HAVANA gene 97295881 97432094 989.0 + 0 ENSG00000259485.1 lincRNA LINC02253 2 OTTHUMG00000172035.1 ncRNA_host +25553 chr15 ENSEMBL gene 97472126 97472252 127.0 - 0 ENSG00000251729.1 rRNA_pseudogene RNA5SP401 3 +25554 chr15 HAVANA gene 97370371 97521811 1726.0 - 0 ENSG00000259664.2 lincRNA LINC02254 2 OTTHUMG00000172036.2 +25555 chr15 HAVANA gene 97533738 97541476 7739.0 - 0 ENSG00000279091.1 TEC AC026523.2 2 OTTHUMG00000172042.1 overlapping_locus +25556 chr15 HAVANA gene 97540597 97560702 1780.0 - 0 ENSG00000259582.3 lincRNA AC026523.1 2 OTTHUMG00000172043.3 overlapping_locus +25557 chr15 HAVANA gene 97572185 97874550 4649.0 - 0 ENSG00000251209.8 lincRNA LINC00923 2 OTTHUMG00000172044.3 +25558 chr15 HAVANA gene 97876289 97878386 2098.0 + 0 ENSG00000259870.1 lincRNA AC024651.2 2 OTTHUMG00000172742.2 +25559 chr15 HAVANA gene 97960698 97973838 4072.0 + 0 ENSG00000140450.8 protein_coding ARRDC4 2 OTTHUMG00000149849.1 +25560 chr15 HAVANA gene 97982509 97991142 1963.0 - 0 ENSG00000259478.2 lincRNA AC024651.1 2 OTTHUMG00000172045.1 +25561 chr15 ENSEMBL gene 98026042 98026139 98.0 + 0 ENSG00000283372.1 snRNA RF00026 3 +25562 chr15 ENSEMBL gene 98074667 98074763 97.0 - 0 ENSG00000222361.1 snRNA RNU6-1186P 3 +25563 chr15 HAVANA gene 98003081 98087384 1471.0 + 0 ENSG00000258483.3 lincRNA LINC02251 2 OTTHUMG00000171822.3 ncRNA_host +25564 chr15 HAVANA gene 98085627 98103712 930.0 - 0 ENSG00000259611.1 lincRNA LINC01582 2 OTTHUMG00000171877.1 overlapping_locus +25565 chr15 HAVANA gene 98118171 98118320 150.0 + 0 ENSG00000259266.1 processed_pseudogene AC022523.2 2 OTTHUMG00000171860.1 +25566 chr15 HAVANA gene 98122563 98131607 410.0 - 0 ENSG00000259320.1 lincRNA AC022523.3 2 OTTHUMG00000171878.1 overlapping_locus +25567 chr15 HAVANA gene 98282075 98285907 385.0 + 0 ENSG00000259041.1 lincRNA AC015722.1 2 OTTHUMG00000171823.1 +25568 chr15 HAVANA gene 98046667 98293177 364.0 - 0 ENSG00000259199.1 lincRNA AC022523.1 2 OTTHUMG00000171865.1 ncRNA_host,overlapping_locus +25569 chr15 HAVANA gene 98319687 98320237 551.0 - 0 ENSG00000274312.1 lincRNA AC015722.2 2 OTTHUMG00000187037.1 +25570 chr15 HAVANA gene 98324273 98327494 289.0 - 0 ENSG00000277987.1 lincRNA LINC02351 2 OTTHUMG00000187038.1 +25571 chr15 HAVANA gene 98466840 98467412 573.0 + 0 ENSG00000259507.1 processed_pseudogene AC103968.1 1 OTTHUMG00000171861.2 pseudo_consens +25572 chr15 HAVANA gene 98437162 98547728 4233.0 - 0 ENSG00000283597.2 protein_coding FAM169B 2 OTTHUMG00000171863.2 +25573 chr15 HAVANA gene 98646951 98647371 334.0 - 0 ENSG00000259424.1 antisense IRAIN 2 OTTHUMG00000171862.1 +25574 chr15 HAVANA gene 98660210 98660668 459.0 + 0 ENSG00000278022.1 sense_intronic AC118658.1 2 OTTHUMG00000187039.1 overlapping_locus +25575 chr15 ENSEMBL gene 98784426 98784502 77.0 + 0 ENSG00000264480.1 miRNA MIR4714 3 +25576 chr15 HAVANA gene 98880659 98893535 263.0 - 0 ENSG00000259621.1 antisense AC069029.1 2 OTTHUMG00000171879.1 +25577 chr15 HAVANA gene 98648539 98964530 13941.0 + 0 ENSG00000140443.14 protein_coding IGF1R 1 OTTHUMG00000149851.10 ncRNA_host,overlapping_locus +25578 chr15 HAVANA gene 98968230 99007795 1629.0 - 0 ENSG00000183571.10 protein_coding PGPEP1L 1 OTTHUMG00000171896.2 overlapping_locus +25579 chr15 HAVANA gene 99028538 99031053 2516.0 + 0 ENSG00000278090.1 lincRNA LUNAR1 2 OTTHUMG00000173033.1 +25580 chr15 HAVANA gene 98954149 99105824 588.0 - 0 ENSG00000259475.1 antisense AC036108.1 2 OTTHUMG00000171895.1 overlapping_locus +25581 chr15 HAVANA gene 99128832 99131806 2562.0 - 0 ENSG00000261054.1 antisense AC036108.2 2 OTTHUMG00000177237.1 +25582 chr15 HAVANA gene 99098217 99135593 7819.0 + 0 ENSG00000182253.14 protein_coding SYNM 1 OTTHUMG00000171887.5 +25583 chr15 HAVANA gene 99139317 99145370 2677.0 + 0 ENSG00000261616.1 antisense AC036108.3 2 OTTHUMG00000177238.1 +25584 chr15 HAVANA gene 99157231 99161140 3910.0 - 0 ENSG00000259921.1 sense_intronic AC022819.1 2 OTTHUMG00000177239.1 overlapping_locus +25585 chr15 HAVANA gene 99136323 99251223 6148.0 - 0 ENSG00000103852.12 protein_coding TTC23 2 OTTHUMG00000147344.11 overlapping_locus +25586 chr15 HAVANA gene 99257632 99260015 2384.0 + 0 ENSG00000259706.1 processed_pseudogene HSP90B2P 1 OTTHUMG00000171904.2 pseudo_consens,overlapping_locus +25587 chr15 HAVANA gene 99284625 99285576 952.0 - 0 ENSG00000259228.1 processed_pseudogene HNRNPA1P62 1 OTTHUMG00000171905.3 pseudo_consens +25588 chr15 HAVANA gene 99337857 99338481 625.0 + 0 ENSG00000259257.1 processed_pseudogene AC037479.1 1 OTTHUMG00000171907.2 pseudo_consens,overlapping_locus +25589 chr15 HAVANA gene 99251362 99390729 9279.0 + 0 ENSG00000168904.14 protein_coding LRRC28 1 OTTHUMG00000149854.10 overlapping_locus +25590 chr15 HAVANA gene 99395179 99396593 323.0 - 0 ENSG00000259590.1 lincRNA LINC02244 2 OTTHUMG00000171948.1 +25591 chr15 HAVANA gene 99396613 99401315 198.0 - 0 ENSG00000259760.1 antisense AC015660.2 2 OTTHUMG00000171949.1 +25592 chr15 HAVANA gene 99416584 99417204 621.0 + 0 ENSG00000274294.1 lincRNA AC015660.3 2 OTTHUMG00000187040.1 +25593 chr15 HAVANA gene 99427009 99431028 395.0 - 0 ENSG00000259341.1 lincRNA AC015660.1 2 OTTHUMG00000171950.1 +25594 chr15 HAVANA gene 99497812 99498375 564.0 - 0 ENSG00000279846.1 TEC AC015660.4 2 OTTHUMG00000177240.1 +25595 chr15 HAVANA gene 99551382 99552117 736.0 - 0 ENSG00000241562.2 processed_pseudogene RPL7P5 1 OTTHUMG00000158070.2 pseudo_consens +25596 chr15 ENSEMBL gene 99681786 99681877 92.0 - 0 ENSG00000201724.1 misc_RNA RF00019 3 +25597 chr15 HAVANA gene 99565417 99716466 6925.0 + 0 ENSG00000068305.17 protein_coding MEF2A 2 OTTHUMG00000171937.3 +25598 chr15 HAVANA gene 99715697 99733561 5697.0 - 0 ENSG00000183060.15 protein_coding LYSMD4 2 OTTHUMG00000149853.5 +25599 chr15 ENSEMBL gene 99791209 99791410 202.0 + 0 ENSG00000241588.3 misc_RNA RN7SL484P 3 +25600 chr15 HAVANA gene 99791127 99792847 739.0 + 0 ENSG00000259655.1 unprocessed_pseudogene AC090825.2 1 OTTHUMG00000172117.1 pseudo_consens +25601 chr15 HAVANA gene 99790156 99806927 3979.0 - 0 ENSG00000182397.14 transcribed_unprocessed_pseudogene DNM1P46 2 OTTHUMG00000149852.2 +25602 chr15 HAVANA gene 99807023 99877148 1291.0 + 0 ENSG00000259363.5 lincRNA AC090825.1 2 OTTHUMG00000172118.3 +25603 chr15 HAVANA gene 99970215 99974010 572.0 + 0 ENSG00000254744.3 antisense AC084855.1 2 OTTHUMG00000165445.4 +25604 chr15 HAVANA gene 99976481 99980774 2393.0 + 0 ENSG00000259219.1 antisense AC084855.2 2 OTTHUMG00000172261.1 +25605 chr15 ENSEMBL gene 100074081 100074190 110.0 - 0 ENSG00000252957.1 rRNA_pseudogene RNA5SP402 3 +25606 chr15 HAVANA gene 100126106 100129743 1781.0 + 0 ENSG00000259356.1 antisense AC022710.1 2 OTTHUMG00000172262.1 +25607 chr15 HAVANA gene 99971589 100342005 8242.0 - 0 ENSG00000140470.13 protein_coding ADAMTS17 1 OTTHUMG00000149867.7 +25608 chr15 HAVANA gene 100344047 100349822 4880.0 - 0 ENSG00000189419.7 lincRNA SPATA41 2 OTTHUMG00000172281.3 +25609 chr15 HAVANA gene 100372939 100437914 661.0 + 0 ENSG00000259430.1 antisense CERS3-AS1 2 OTTHUMG00000172308.1 +25610 chr15 HAVANA gene 100400395 100544995 5130.0 - 0 ENSG00000154227.13 protein_coding CERS3 1 OTTHUMG00000172568.6 +25611 chr15 HAVANA gene 100547765 100550153 2389.0 - 0 ENSG00000270127.2 lincRNA AC027020.2 2 OTTHUMG00000177241.2 +25612 chr15 ENSEMBL gene 100551820 100551922 103.0 - 0 ENSG00000251819.1 snRNA RNU6-322P 3 +25613 chr15 HAVANA gene 100553529 100558954 1122.0 - 0 ENSG00000259205.2 processed_pseudogene PRKXP1 1 OTTHUMG00000172351.2 pseudo_consens +25614 chr15 HAVANA gene 100558677 100559798 632.0 + 0 ENSG00000259540.1 antisense AC027020.1 2 OTTHUMG00000172350.2 +25615 chr15 ENSEMBL gene 100560686 100560792 107.0 - 0 ENSG00000200095.1 snRNA RNU6-181P 3 +25616 chr15 HAVANA gene 100559369 100603230 7790.0 - 0 ENSG00000140471.16 protein_coding LINS1 1 OTTHUMG00000149865.12 ncRNA_host +25617 chr15 ENSEMBL gene 100638363 100638457 95.0 + 0 ENSG00000212306.1 misc_RNA RF00019 3 +25618 chr15 HAVANA gene 100645434 100646655 1222.0 - 0 ENSG00000259381.2 processed_pseudogene AC090695.1 1 OTTHUMG00000172373.2 pseudo_consens +25619 chr15 HAVANA gene 100602534 100651705 5397.0 + 0 ENSG00000183475.12 protein_coding ASB7 2 OTTHUMG00000149868.3 ncRNA_host +25620 chr15 HAVANA gene 100782417 100786189 3773.0 - 0 ENSG00000279588.2 TEC AC087762.2 2 OTTHUMG00000192058.1 +25621 chr15 HAVANA gene 100716249 100828497 643.0 + 0 ENSG00000259579.1 lincRNA AC087762.1 2 OTTHUMG00000172376.1 +25622 chr15 HAVANA gene 100846604 100846767 164.0 - 0 ENSG00000259586.1 processed_pseudogene AC015712.3 2 OTTHUMG00000172066.1 +25623 chr15 HAVANA gene 100849561 100861756 1479.0 + 0 ENSG00000232386.9 lincRNA AC015712.1 2 OTTHUMG00000186438.3 overlapping_locus +25624 chr15 HAVANA gene 100861843 100874369 1183.0 + 0 ENSG00000259604.5 lincRNA AC015712.4 2 OTTHUMG00000172058.2 overlapping_locus +25625 chr15 HAVANA gene 100849831 100876836 8164.0 + 0 ENSG00000272808.4 processed_transcript AC015712.6 2 OTTHUMG00000172065.2 overlapping_locus +25626 chr15 HAVANA gene 100861924 100885329 564.0 + 0 ENSG00000272639.1 processed_transcript AC015712.5 2 OTTHUMG00000149870.4 overlapping_locus +25627 chr15 HAVANA gene 100888472 100889106 635.0 - 0 ENSG00000278456.1 antisense AC015712.7 2 OTTHUMG00000187041.1 +25628 chr15 HAVANA gene 100877714 100916626 5772.0 + 0 ENSG00000184254.16 protein_coding ALDH1A3 2 OTTHUMG00000186439.3 overlapping_locus +25629 chr15 HAVANA gene 100892859 100919283 6792.0 - 0 ENSG00000259583.2 antisense AC015712.2 2 OTTHUMG00000172067.2 +25630 chr15 HAVANA gene 101043716 101049456 491.0 - 0 ENSG00000259376.1 antisense AC090907.1 2 OTTHUMG00000172068.1 +25631 chr15 HAVANA gene 100919215 101078254 17600.0 + 0 ENSG00000154237.12 protein_coding LRRK1 2 OTTHUMG00000165514.5 +25632 chr15 HAVANA gene 101050732 101086066 720.0 - 0 ENSG00000259755.1 antisense AC090907.2 2 OTTHUMG00000172069.1 +25633 chr15 HAVANA gene 101116603 101117546 556.0 + 0 ENSG00000259365.1 lincRNA AC019254.2 2 OTTHUMG00000172090.1 +25634 chr15 HAVANA gene 101168530 101170821 762.0 + 0 ENSG00000259182.5 lincRNA AC019254.1 2 OTTHUMG00000172091.1 +25635 chr15 HAVANA gene 101175723 101251932 5555.0 - 0 ENSG00000131873.6 protein_coding CHSY1 1 OTTHUMG00000149873.3 +25636 chr15 HAVANA gene 101270817 101277500 3766.0 - 0 ENSG00000131871.14 protein_coding SELENOS 2 OTTHUMG00000166441.5 +25637 chr15 HAVANA gene 101281510 101295282 3669.0 - 0 ENSG00000131876.16 protein_coding SNRPA1 2 OTTHUMG00000149871.3 +25638 chr15 HAVANA gene 101299656 101301648 1993.0 - 0 ENSG00000279970.1 TEC AC023024.2 2 OTTHUMG00000177245.1 overlapping_locus +25639 chr15 HAVANA gene 101295419 101305737 2590.0 + 0 ENSG00000259172.1 antisense AC023024.1 2 OTTHUMG00000172092.1 +25640 chr15 HAVANA gene 101334437 101337428 639.0 + 0 ENSG00000259764.1 antisense PCSK6-AS1 2 OTTHUMG00000172093.1 +25641 chr15 HAVANA gene 101495052 101495567 516.0 - 0 ENSG00000274139.1 sense_intronic AC090164.2 2 OTTHUMG00000187042.2 overlapping_locus +25642 chr15 HAVANA gene 101522597 101524739 2143.0 - 0 ENSG00000277210.3 lincRNA AC090164.3 2 OTTHUMG00000187043.4 overlapping_locus +25643 chr15 HAVANA gene 101297142 101525202 13239.0 - 0 ENSG00000140479.16 protein_coding PCSK6 1 OTTHUMG00000172097.11 overlapping_locus +25644 chr15 HAVANA gene 101527581 101528349 313.0 - 0 ENSG00000282793.1 lincRNA AC090164.4 2 OTTHUMG00000191549.1 overlapping_locus +25645 chr15 HAVANA gene 101562536 101562974 439.0 + 0 ENSG00000259464.2 processed_pseudogene SNRPCP18 1 OTTHUMG00000171903.2 pseudo_consens +25646 chr15 HAVANA gene 101580893 101581556 664.0 - 0 ENSG00000259695.2 processed_pseudogene AC090164.1 1 OTTHUMG00000171906.2 pseudo_consens +25647 chr15 HAVANA gene 101613676 101614339 489.0 - 0 ENSG00000273585.1 lincRNA LINC02348 2 OTTHUMG00000187044.1 +25648 chr15 ENSEMBL gene 101648206 101648312 107.0 - 0 ENSG00000252614.1 snRNA RNU6-807P 3 +25649 chr15 HAVANA gene 101621444 101652391 11894.0 - 0 ENSG00000184277.12 protein_coding TM2D3 1 OTTHUMG00000149872.4 ncRNA_host +25650 chr15 HAVANA gene 101653598 101724604 4584.0 - 0 ENSG00000185418.15 protein_coding TARSL2 2 OTTHUMG00000149869.5 +25651 chr15 HAVANA gene 101732201 101746870 970.0 - 0 ENSG00000259658.5 transcribed_unprocessed_pseudogene AC027559.1 1 OTTHUMG00000172150.5 pseudo_consens +25652 chr15 ENSEMBL gene 101773238 101773513 276.0 - 0 ENSG00000240927.3 misc_RNA RN7SL209P 3 +25653 chr15 HAVANA gene 101771758 101781989 1798.0 - 0 ENSG00000259236.1 unprocessed_pseudogene GOLGA8VP 1 OTTHUMG00000172266.1 pseudo_consens +25654 chr15 HAVANA gene 101751032 101794302 15281.0 + 0 ENSG00000259660.2 transcribed_unprocessed_pseudogene DNM1P47 2 OTTHUMG00000172265.2 +25655 chr15 HAVANA gene 101803509 101806887 1238.0 + 0 ENSG00000184140.6 protein_coding OR4F6 2 OTTHUMG00000172267.2 +25656 chr15 HAVANA gene 101812202 101820197 2119.0 + 0 ENSG00000182854.8 protein_coding OR4F15 2 OTTHUMG00000172268.2 +25657 chr15 HAVANA gene 101828741 101829679 939.0 + 0 ENSG00000232459.1 unprocessed_pseudogene OR4F14P 2 OTTHUMG00000154261.1 +25658 chr15 HAVANA gene 101842119 101850324 2054.0 + 0 ENSG00000214344.4 transcribed_unprocessed_pseudogene OR4F13P 2 OTTHUMG00000154399.2 +25659 chr15 HAVANA gene 101875964 101876901 938.0 + 0 ENSG00000257109.3 unprocessed_pseudogene OR4F28P 2 OTTHUMG00000172269.1 +25660 chr15 HAVANA gene 101887354 101887767 414.0 - 0 ENSG00000259454.1 processed_pseudogene WBP1LP5 1 OTTHUMG00000172270.1 pseudo_consens +25661 chr15 HAVANA gene 101903154 101903204 51.0 + 0 ENSG00000259646.1 unprocessed_pseudogene AC140725.2 2 OTTHUMG00000172271.1 +25662 chr15 HAVANA gene 101922042 101923113 1072.0 - 0 ENSG00000177693.4 protein_coding OR4F4 2 OTTHUMG00000172272.2 +25663 chr15 HAVANA gene 101926164 101933350 1759.0 - 0 ENSG00000183909.6 transcribed_unprocessed_pseudogene OR4G2P 2 OTTHUMG00000154249.2 +25664 chr15 HAVANA gene 101937591 101938470 880.0 - 0 ENSG00000275771.1 unprocessed_pseudogene OR4G6P 2 OTTHUMG00000187876.1 +25665 chr15 HAVANA gene 101954885 101956412 1219.0 + 0 ENSG00000248893.3 lincRNA FAM138E 2 OTTHUMG00000172273.2 +25666 chr15 ENSEMBL gene 101960459 101960596 138.0 - 0 ENSG00000284557.1 miRNA MIR1302-10 3 +25667 chr15 HAVANA gene 101959848 101961408 909.0 - 0 ENSG00000259553.5 lincRNA AC140725.1 2 OTTHUMG00000172274.1 ncRNA_host +25668 chr15 ENSEMBL gene 101973524 101973591 68.0 + 0 ENSG00000275449.1 miRNA MIR6859-3 3 +25669 chr15 HAVANA gene 101961603 101976543 2351.0 + 0 ENSG00000185596.16 transcribed_unprocessed_pseudogene WASH3P 2 OTTHUMG00000172275.2 +25670 chr15 HAVANA gene 101976558 101979093 1740.0 - 0 ENSG00000248472.8 transcribed_unprocessed_pseudogene DDX11L9 2 OTTHUMG00000172276.1 +25671 chr16 HAVANA gene 11555 14090 1723.0 + 0 ENSG00000233614.6 transcribed_unprocessed_pseudogene DDX11L10 2 OTTHUMG00000086927.2 +25672 chr16 ENSEMBL gene 17052 17119 68.0 - 0 ENSG00000278739.1 miRNA MIR6859-4 3 +25673 chr16 HAVANA gene 14381 18068 1246.0 - 0 ENSG00000234769.7 unprocessed_pseudogene WASH4P 2 OTTHUMG00000059914.6 overlapping_locus +25674 chr16 HAVANA gene 22910 25123 1054.0 + 0 ENSG00000231439.4 lincRNA WASIR2 2 OTTHUMG00000060721.2 +25675 chr16 HAVANA gene 17514 35195 773.0 - 0 ENSG00000260803.1 processed_transcript Z84723.1 2 OTTHUMG00000172805.1 overlapping_locus +25676 chr16 HAVANA gene 29336 38321 1674.0 - 0 ENSG00000226942.2 unprocessed_pseudogene IL9RP3 2 OTTHUMG00000060718.1 overlapping_locus +25677 chr16 HAVANA gene 46407 53628 1889.0 - 0 ENSG00000161980.5 protein_coding POLR3K 2 OTTHUMG00000060722.3 +25678 chr16 HAVANA gene 53010 57669 3060.0 + 0 ENSG00000161981.10 protein_coding SNRNP25 2 OTTHUMG00000060720.8 +25679 chr16 HAVANA gene 74683 74961 279.0 + 0 ENSG00000278995.1 TEC Z69720.2 2 OTTHUMG00000186629.1 +25680 chr16 HAVANA gene 58059 76355 4914.0 - 0 ENSG00000007384.15 protein_coding RHBDF1 1 OTTHUMG00000060719.15 +25681 chr16 HAVANA gene 77007 85853 1661.0 + 0 ENSG00000103152.11 protein_coding MPG 2 OTTHUMG00000047887.6 +25682 chr16 HAVANA gene 90631 91102 472.0 + 0 ENSG00000269482.1 antisense Z69720.1 2 OTTHUMG00000183022.1 +25683 chr16 HAVANA gene 125737 127219 801.0 + 0 ENSG00000228779.1 antisense Z69666.1 2 OTTHUMG00000060826.1 +25684 chr16 HAVANA gene 84271 138860 6609.0 - 0 ENSG00000103148.15 protein_coding NPRL3 1 OTTHUMG00000047792.19 +25685 chr16 HAVANA gene 152687 154503 755.0 + 0 ENSG00000130656.4 protein_coding HBZ 2 OTTHUMG00000059928.1 overlapping_locus +25686 chr16 HAVANA gene 163122 165156 429.0 + 0 ENSG00000206178.2 unprocessed_pseudogene HBZP1 2 OTTHUMG00000059925.1 overlapping_locus +25687 chr16 HAVANA gene 153892 166768 916.0 + 0 ENSG00000206177.6 protein_coding HBM 2 OTTHUMG00000059926.1 overlapping_locus +25688 chr16 HAVANA gene 168679 169334 372.0 + 0 ENSG00000225323.1 unprocessed_pseudogene Z84721.1 2 OTTHUMG00000059927.1 +25689 chr16 HAVANA gene 172876 173710 827.0 + 0 ENSG00000188536.13 protein_coding HBA2 2 OTTHUMG00000059924.3 +25690 chr16 HAVANA gene 176680 177522 835.0 + 0 ENSG00000206172.8 protein_coding HBA1 2 OTTHUMG00000060138.3 +25691 chr16 ENSEMBL gene 178554 178656 103.0 + 0 ENSG00000207243.1 misc_RNA RF00019 3 +25692 chr16 HAVANA gene 180453 181181 536.0 + 0 ENSG00000086506.2 protein_coding HBQ1 2 OTTHUMG00000060727.1 +25693 chr16 HAVANA gene 185748 186294 547.0 - 0 ENSG00000268836.1 lincRNA Z69706.1 2 OTTHUMG00000183023.1 +25694 chr16 HAVANA gene 188969 229463 6176.0 - 0 ENSG00000007392.16 protein_coding LUC7L 1 OTTHUMG00000060730.12 +25695 chr16 HAVANA gene 231134 231472 339.0 + 0 ENSG00000206168.1 processed_pseudogene Z69890.1 1 OTTHUMG00000060729.2 pseudo_consens +25696 chr16 HAVANA gene 234546 268971 4699.0 + 0 ENSG00000167930.15 protein_coding FAM234A 1 OTTHUMG00000060728.16 overlapping_locus +25697 chr16 HAVANA gene 249547 269943 2242.0 + 0 ENSG00000269881.1 protein_coding AC004754.1 2 OTTHUMG00000183024.1 overlapping_locus +25698 chr16 HAVANA gene 268301 275980 4798.0 - 0 ENSG00000076344.15 protein_coding RGS11 2 OTTHUMG00000064893.6 +25699 chr16 HAVANA gene 268727 283010 2429.0 + 0 ENSG00000242173.8 protein_coding ARHGDIG 1 OTTHUMG00000064892.6 overlapping_locus +25700 chr16 HAVANA gene 283152 287215 2248.0 + 0 ENSG00000185615.15 protein_coding PDIA2 2 OTTHUMG00000064891.5 +25701 chr16 HAVANA gene 287440 352673 7487.0 - 0 ENSG00000103126.14 protein_coding AXIN1 1 OTTHUMG00000064930.4 +25702 chr16 HAVANA gene 366969 371289 3042.0 - 0 ENSG00000086504.16 protein_coding MRPL28 2 OTTHUMG00000047994.8 overlapping_locus +25703 chr16 HAVANA gene 370773 387113 4447.0 - 0 ENSG00000129925.10 protein_coding TMEM8A 1 OTTHUMG00000047996.8 overlapping_locus +25704 chr16 HAVANA gene 382097 392960 2291.0 + 0 ENSG00000236829.9 transcribed_processed_pseudogene Z97634.1 1 OTTHUMG00000047997.2 pseudo_consens +25705 chr16 HAVANA gene 396725 410367 3670.0 + 0 ENSG00000103202.12 protein_coding NME4 1 OTTHUMG00000047995.9 overlapping_locus +25706 chr16 HAVANA gene 401826 412487 4046.0 + 0 ENSG00000242612.6 protein_coding DECR2 2 OTTHUMG00000047846.8 overlapping_locus +25707 chr16 HAVANA gene 424243 424543 301.0 - 0 ENSG00000276984.1 lincRNA AL023881.1 2 OTTHUMG00000186630.1 +25708 chr16 ENSEMBL gene 439297 439397 101.0 - 0 ENSG00000201034.1 misc_RNA RF00019 3 +25709 chr16 HAVANA gene 451404 453461 278.0 + 0 ENSG00000230428.1 transcribed_unprocessed_pseudogene AL049542.1 2 OTTHUMG00000132349.1 overlapping_locus +25710 chr16 HAVANA gene 425619 523011 6317.0 + 0 ENSG00000090565.15 protein_coding RAB11FIP3 1 OTTHUMG00000047843.7 overlapping_locus +25711 chr16 HAVANA gene 525155 527407 2253.0 - 0 ENSG00000277142.1 lincRNA LINC00235 2 OTTHUMG00000186631.1 +25712 chr16 ENSEMBL gene 535316 535368 53.0 + 0 ENSG00000266124.1 miRNA MIR5587 3 +25713 chr16 ENSEMBL gene 543277 543366 90.0 + 0 ENSG00000266235.1 miRNA MIR3176 3 +25714 chr16 HAVANA gene 547185 553847 476.0 - 0 ENSG00000261691.1 antisense Z97986.1 2 OTTHUMG00000172798.1 +25715 chr16 HAVANA gene 527717 554636 7987.0 + 0 ENSG00000103326.11 protein_coding CAPN15 2 OTTHUMG00000119059.5 ncRNA_host +25716 chr16 HAVANA gene 560422 565528 2216.0 + 0 ENSG00000161992.5 protein_coding PRR35 1 OTTHUMG00000154104.1 +25717 chr16 HAVANA gene 566996 569495 2105.0 + 0 ENSG00000257108.1 protein_coding NHLRC4 2 OTTHUMG00000047857.6 overlapping_locus +25718 chr16 HAVANA gene 568837 576257 1442.0 + 0 ENSG00000282907.1 processed_transcript Z98883.1 2 OTTHUMG00000191519.2 overlapping_locus +25719 chr16 HAVANA gene 566995 584136 7904.0 + 0 ENSG00000007541.16 protein_coding PIGQ 2 OTTHUMG00000168047.10 overlapping_locus +25720 chr16 HAVANA gene 589357 629272 4180.0 + 0 ENSG00000197562.9 protein_coding RAB40C 2 OTTHUMG00000047854.6 overlapping_locus +25721 chr16 HAVANA gene 629239 634116 4878.0 + 0 ENSG00000127578.6 protein_coding WFIKKN1 2 OTTHUMG00000090359.3 overlapping_locus +25722 chr16 HAVANA gene 634427 636366 1830.0 - 0 ENSG00000130731.15 protein_coding METTL26 2 OTTHUMG00000047855.4 +25723 chr16 HAVANA gene 636817 648474 5034.0 + 0 ENSG00000172366.19 protein_coding MCRIP2 2 OTTHUMG00000048042.7 +25724 chr16 HAVANA gene 648473 649200 389.0 - 0 ENSG00000228201.1 antisense AL022341.1 2 OTTHUMG00000048041.1 +25725 chr16 HAVANA gene 654611 656194 1417.0 - 0 ENSG00000262528.2 antisense AL022341.2 2 OTTHUMG00000177339.2 +25726 chr16 HAVANA gene 649311 667833 10534.0 + 0 ENSG00000161996.18 protein_coding WDR90 1 OTTHUMG00000048040.5 +25727 chr16 HAVANA gene 668086 674174 5174.0 + 0 ENSG00000140983.13 protein_coding RHOT2 2 OTTHUMG00000121139.6 +25728 chr16 HAVANA gene 675666 678268 1884.0 + 0 ENSG00000103269.13 protein_coding RHBDL1 1 OTTHUMG00000121141.4 +25729 chr16 HAVANA gene 678645 679061 417.0 + 0 ENSG00000279441.1 TEC Z92544.3 2 OTTHUMG00000178116.1 +25730 chr16 HAVANA gene 678504 679777 1274.0 - 0 ENSG00000260394.2 antisense Z92544.1 2 OTTHUMG00000172948.2 +25731 chr16 HAVANA gene 680224 682870 2316.0 + 0 ENSG00000103266.10 protein_coding STUB1 2 OTTHUMG00000121140.6 +25732 chr16 HAVANA gene 681671 684528 2627.0 - 0 ENSG00000161999.11 protein_coding JMJD8 2 OTTHUMG00000172950.2 +25733 chr16 HAVANA gene 684622 690444 3570.0 - 0 ENSG00000127580.16 protein_coding WDR24 2 OTTHUMG00000090421.4 +25734 chr16 HAVANA gene 689001 692554 3554.0 + 0 ENSG00000261659.2 processed_transcript Z92544.2 2 OTTHUMG00000172952.2 +25735 chr16 HAVANA gene 692498 705829 3989.0 - 0 ENSG00000127585.11 protein_coding FBXL16 2 OTTHUMG00000090420.3 +25736 chr16 HAVANA gene 707650 709067 1418.0 + 0 ENSG00000279255.1 TEC Z97653.2 2 OTTHUMG00000186665.1 +25737 chr16 HAVANA gene 710746 711277 446.0 - 0 ENSG00000259840.1 lincRNA Z97653.1 2 OTTHUMG00000172953.1 +25738 chr16 HAVANA gene 715115 719655 3692.0 + 0 ENSG00000103260.8 protein_coding METRN 2 OTTHUMG00000047851.6 +25739 chr16 HAVANA gene 720581 722601 1923.0 + 0 ENSG00000103254.9 protein_coding FAM173A 2 OTTHUMG00000121177.3 +25740 chr16 HAVANA gene 722582 726954 4147.0 - 0 ENSG00000162004.16 protein_coding CCDC78 2 OTTHUMG00000121176.6 +25741 chr16 HAVANA gene 726936 735525 4890.0 + 0 ENSG00000103253.18 protein_coding HAGHL 1 OTTHUMG00000170560.9 +25742 chr16 HAVANA gene 729753 741329 8101.0 - 0 ENSG00000103245.13 protein_coding CIAO3 1 OTTHUMG00000122093.6 +25743 chr16 HAVANA gene 760762 768865 2560.0 + 0 ENSG00000102854.15 protein_coding MSLN 2 OTTHUMG00000047992.5 +25744 chr16 HAVANA gene 769119 769443 325.0 - 0 ENSG00000279136.1 TEC AL031258.1 2 OTTHUMG00000172814.1 overlapping_locus +25745 chr16 ENSEMBL gene 770183 770277 95.0 + 0 ENSG00000207579.1 miRNA MIR662 3 +25746 chr16 HAVANA gene 769428 783370 2356.0 - 0 ENSG00000162006.9 protein_coding MSLNL 2 OTTHUMG00000168780.3 overlapping_locus +25747 chr16 HAVANA gene 784974 788397 2769.0 - 0 ENSG00000007376.7 protein_coding RPUSD1 2 OTTHUMG00000047840.4 +25748 chr16 HAVANA gene 798041 800733 984.0 - 0 ENSG00000127588.4 protein_coding GNG13 2 OTTHUMG00000047839.3 +25749 chr16 HAVANA gene 788046 800737 5916.0 + 0 ENSG00000127586.16 protein_coding CHTF18 2 OTTHUMG00000047838.5 +25750 chr16 HAVANA gene 848525 849065 541.0 - 0 ENSG00000275438.1 lincRNA AL031008.1 2 OTTHUMG00000186666.1 +25751 chr16 HAVANA gene 883780 885090 530.0 + 0 ENSG00000260022.1 antisense AL031716.1 2 OTTHUMG00000172820.1 +25752 chr16 HAVANA gene 898967 905224 4728.0 - 0 ENSG00000260316.2 sense_intronic AL008727.1 2 OTTHUMG00000172829.2 overlapping_locus +25753 chr16 HAVANA gene 921033 934495 1448.0 + 0 ENSG00000260439.1 antisense LMF1-AS1 2 OTTHUMG00000172821.1 +25754 chr16 HAVANA gene 968375 969012 638.0 - 0 ENSG00000276931.1 sense_intronic AC009041.4 2 OTTHUMG00000186671.1 overlapping_locus +25755 chr16 HAVANA gene 853634 981318 8233.0 - 0 ENSG00000103227.18 protein_coding LMF1 1 OTTHUMG00000047848.5 overlapping_locus +25756 chr16 HAVANA gene 975761 981596 3905.0 - 0 ENSG00000260807.6 lincRNA AC009041.2 2 OTTHUMG00000172822.2 overlapping_locus +25757 chr16 HAVANA gene 981808 986979 4432.0 + 0 ENSG00000005513.9 protein_coding SOX8 2 OTTHUMG00000122101.3 +25758 chr16 HAVANA gene 991151 1000926 1383.0 - 0 ENSG00000260496.3 lincRNA AC009041.1 2 OTTHUMG00000172830.1 +25759 chr16 HAVANA gene 1065240 1066502 879.0 + 0 ENSG00000261720.1 lincRNA AC009041.3 2 OTTHUMG00000172832.1 +25760 chr16 HAVANA gene 1064093 1078731 4022.0 - 0 ENSG00000261713.6 processed_transcript SSTR5-AS1 2 OTTHUMG00000172831.1 +25761 chr16 HAVANA gene 1078781 1080142 1362.0 + 0 ENSG00000162009.8 protein_coding SSTR5 2 OTTHUMG00000047842.5 retrogene +25762 chr16 HAVANA gene 1090005 1096244 1762.0 - 0 ENSG00000184471.7 protein_coding C1QTNF8 2 OTTHUMG00000167756.1 +25763 chr16 HAVANA gene 1101260 1105461 875.0 - 0 ENSG00000260702.3 unprocessed_pseudogene AL031713.1 2 OTTHUMG00000172990.3 +25764 chr16 HAVANA gene 1111627 1113399 1773.0 + 0 ENSG00000260532.1 lincRNA AL031598.1 2 OTTHUMG00000172991.1 +25765 chr16 HAVANA gene 1148224 1148754 531.0 - 0 ENSG00000273551.1 lincRNA AC120498.8 2 OTTHUMG00000186691.1 +25766 chr16 HAVANA gene 1156976 1157974 542.0 - 0 ENSG00000260403.1 antisense AC120498.3 2 OTTHUMG00000172993.1 +25767 chr16 HAVANA gene 1159548 1160176 476.0 - 0 ENSG00000259910.1 antisense AC120498.1 2 OTTHUMG00000172994.1 +25768 chr16 HAVANA gene 1206560 1207124 338.0 - 0 ENSG00000261294.1 antisense AC120498.6 2 OTTHUMG00000172995.1 +25769 chr16 HAVANA gene 1153121 1221772 8606.0 + 0 ENSG00000196557.12 protein_coding CACNA1H 1 OTTHUMG00000172992.4 +25770 chr16 HAVANA gene 1223639 1224143 505.0 + 0 ENSG00000277010.1 antisense AC120498.10 2 OTTHUMG00000186692.1 +25771 chr16 HAVANA gene 1221651 1225257 1255.0 - 0 ENSG00000116176.6 protein_coding TPSG1 2 OTTHUMG00000090466.2 +25772 chr16 HAVANA gene 1227272 1230184 1738.0 - 0 ENSG00000197253.13 protein_coding TPSB2 2 OTTHUMG00000155926.4 +25773 chr16 HAVANA gene 1240696 1242554 1512.0 + 0 ENSG00000172236.16 protein_coding TPSAB1 2 OTTHUMG00000090467.3 +25774 chr16 HAVANA gene 1257339 1258074 249.0 + 0 ENSG00000260182.1 sense_intronic AC120498.2 2 OTTHUMG00000172996.1 overlapping_locus +25775 chr16 HAVANA gene 1256059 1258998 1532.0 + 0 ENSG00000095917.13 protein_coding TPSD1 1 OTTHUMG00000128511.4 overlapping_locus +25776 chr16 HAVANA gene 1260952 1263845 1966.0 - 0 ENSG00000196364.9 transcribed_unprocessed_pseudogene PRSS29P 1 OTTHUMG00000172997.2 pseudo_consens +25777 chr16 HAVANA gene 1273751 1276522 330.0 - 0 ENSG00000261564.1 unprocessed_pseudogene AC120498.7 2 OTTHUMG00000176426.1 +25778 chr16 HAVANA gene 1280161 1280544 299.0 - 0 ENSG00000260991.2 unprocessed_pseudogene AC120498.5 2 OTTHUMG00000176427.2 +25779 chr16 HAVANA gene 1286351 1288837 610.0 - 0 ENSG00000260284.1 unprocessed_pseudogene TPSP2 2 OTTHUMG00000172998.1 +25780 chr16 HAVANA gene 1294551 1299166 320.0 - 0 ENSG00000260710.1 lincRNA AC120498.4 2 OTTHUMG00000172999.1 +25781 chr16 HAVANA gene 1305547 1309413 3867.0 - 0 ENSG00000274751.1 antisense AC120498.9 2 OTTHUMG00000047845.7 +25782 chr16 HAVANA gene 1317891 1322845 4489.0 - 0 ENSG00000261505.1 antisense AL031714.1 2 OTTHUMG00000176428.1 +25783 chr16 HAVANA gene 1308880 1327018 9679.0 + 0 ENSG00000103275.19 protein_coding UBE2I 2 OTTHUMG00000186701.3 +25784 chr16 HAVANA gene 1329078 1329777 389.0 + 0 ENSG00000219274.1 processed_pseudogene RPS20P2 1 OTTHUMG00000047844.1 pseudo_consens +25785 chr16 HAVANA gene 1333601 1349441 6146.0 + 0 ENSG00000007516.13 protein_coding BAIAP3 1 OTTHUMG00000047833.5 +25786 chr16 HAVANA gene 1349240 1351911 1243.0 - 0 ENSG00000007520.3 protein_coding TSR3 2 OTTHUMG00000047834.3 +25787 chr16 HAVANA gene 1358900 1361405 435.0 - 0 ENSG00000260425.1 antisense AL031709.1 2 OTTHUMG00000176489.1 +25788 chr16 HAVANA gene 1351923 1364113 4102.0 + 0 ENSG00000090581.9 protein_coding GNPTG 2 OTTHUMG00000047835.6 +25789 chr16 HAVANA gene 1408834 1412248 379.0 + 0 ENSG00000260132.1 antisense AL032819.1 2 OTTHUMG00000176550.1 +25790 chr16 HAVANA gene 1363205 1414751 7494.0 - 0 ENSG00000059145.18 protein_coding UNKL 1 OTTHUMG00000128553.7 +25791 chr16 HAVANA gene 1419744 1420800 1057.0 - 0 ENSG00000174109.4 protein_coding C16orf91 2 OTTHUMG00000192232.1 +25792 chr16 HAVANA gene 1431035 1433397 925.0 + 0 ENSG00000284395.1 protein_coding AL032819.3 2 OTTHUMG00000176551.2 +25793 chr16 HAVANA gene 1437154 1439315 2162.0 + 0 ENSG00000279930.1 TEC AL032819.2 2 OTTHUMG00000176552.1 +25794 chr16 HAVANA gene 1434383 1444556 2726.0 - 0 ENSG00000197599.12 protein_coding CCDC154 2 OTTHUMG00000154097.3 +25795 chr16 HAVANA gene 1445343 1446519 1124.0 + 0 ENSG00000261641.2 antisense AL031600.3 2 OTTHUMG00000176553.1 +25796 chr16 HAVANA gene 1451760 1452653 570.0 + 0 ENSG00000260051.1 antisense AL031600.1 2 OTTHUMG00000176554.1 +25797 chr16 HAVANA gene 1467673 1472684 307.0 - 0 ENSG00000261430.1 sense_intronic AL031600.2 2 OTTHUMG00000176555.1 overlapping_locus +25798 chr16 HAVANA gene 1444934 1475580 8119.0 - 0 ENSG00000103249.17 protein_coding CLCN7 1 OTTHUMG00000044467.5 overlapping_locus +25799 chr16 HAVANA gene 1477830 1478583 754.0 + 0 ENSG00000219027.2 processed_pseudogene RPS3AP2 1 OTTHUMG00000044469.2 pseudo_consens +25800 chr16 HAVANA gene 1485886 1488981 1688.0 - 0 ENSG00000251692.7 protein_coding PTX4 1 OTTHUMG00000044470.2 +25801 chr16 HAVANA gene 1493344 1510457 4239.0 + 0 ENSG00000100726.14 protein_coding TELO2 2 OTTHUMG00000044471.7 +25802 chr16 HAVANA gene 1512979 1514675 682.0 + 0 ENSG00000260646.1 lincRNA AL031705.1 2 OTTHUMG00000176584.1 +25803 chr16 HAVANA gene 1530715 1533301 2587.0 + 0 ENSG00000280062.1 TEC AL031719.1 2 OTTHUMG00000176586.1 overlapping_locus +25804 chr16 HAVANA gene 1553655 1554130 476.0 - 0 ENSG00000280231.1 TEC AL031719.2 2 OTTHUMG00000176601.1 overlapping_locus +25805 chr16 HAVANA gene 1528688 1555580 2047.0 + 0 ENSG00000131634.13 protein_coding TMEM204 2 OTTHUMG00000176585.1 overlapping_locus +25806 chr16 HAVANA gene 1576716 1578371 1656.0 - 0 ENSG00000280327.1 TEC Z97633.1 2 OTTHUMG00000176602.1 overlapping_locus +25807 chr16 HAVANA gene 1579242 1580308 404.0 - 0 ENSG00000260954.1 sense_intronic AL133297.1 2 OTTHUMG00000176603.1 overlapping_locus +25808 chr16 HAVANA gene 1580527 1610328 485.0 + 0 ENSG00000260989.1 antisense AL133297.2 2 OTTHUMG00000176587.1 +25809 chr16 HAVANA gene 1510427 1612110 8168.0 - 0 ENSG00000187535.13 protein_coding IFT140 1 OTTHUMG00000128585.4 overlapping_locus +25810 chr16 HAVANA gene 1625628 1626160 329.0 - 0 ENSG00000226890.1 antisense Z97652.1 1 OTTHUMG00000157255.1 +25811 chr16 HAVANA gene 1612325 1677908 8373.0 + 0 ENSG00000007545.15 protein_coding CRAMP1 2 OTTHUMG00000074087.7 overlapping_locus +25812 chr16 HAVANA gene 1632259 1686715 5326.0 + 0 ENSG00000261732.1 protein_coding AL031708.1 2 OTTHUMG00000176609.2 overlapping_locus +25813 chr16 HAVANA gene 1688355 1690536 2182.0 + 0 ENSG00000278987.1 TEC AL031009.1 2 OTTHUMG00000176652.1 overlapping_locus +25814 chr16 HAVANA gene 1678256 1702280 4768.0 + 0 ENSG00000206053.12 protein_coding JPT2 1 OTTHUMG00000047859.4 overlapping_locus +25815 chr16 HAVANA gene 1707252 1707973 722.0 + 0 ENSG00000275092.1 sense_intronic AL031710.2 2 OTTHUMG00000186708.1 overlapping_locus +25816 chr16 HAVANA gene 1713527 1714208 468.0 - 0 ENSG00000261399.1 antisense AL031710.1 2 OTTHUMG00000176703.1 +25817 chr16 ENSEMBL gene 1734985 1735066 82.0 + 0 ENSG00000265820.1 miRNA MIR3177 3 +25818 chr16 HAVANA gene 1751559 1752262 565.0 - 0 ENSG00000261207.1 antisense AL031717.1 2 OTTHUMG00000176704.1 +25819 chr16 HAVANA gene 1706183 1770317 10285.0 + 0 ENSG00000138834.12 protein_coding MAPK8IP3 2 OTTHUMG00000128637.5 ncRNA_host,overlapping_locus +25820 chr16 HAVANA gene 1770286 1771730 1445.0 - 0 ENSG00000103024.7 protein_coding NME3 2 OTTHUMG00000128635.3 +25821 chr16 HAVANA gene 1771890 1773155 1097.0 - 0 ENSG00000074071.14 protein_coding MRPS34 2 OTTHUMG00000128636.2 +25822 chr16 HAVANA gene 1773207 1781708 6909.0 + 0 ENSG00000197774.12 protein_coding EME2 2 OTTHUMG00000176706.3 +25823 chr16 HAVANA gene 1782901 1789191 4983.0 + 0 ENSG00000095906.16 protein_coding NUBP2 1 OTTHUMG00000128639.5 +25824 chr16 HAVANA gene 1776712 1793700 3192.0 - 0 ENSG00000162032.15 protein_coding SPSB3 2 OTTHUMG00000176746.2 overlapping_locus +25825 chr16 HAVANA gene 1790413 1794971 2363.0 - 0 ENSG00000099769.5 protein_coding IGFALS 1 OTTHUMG00000128638.2 overlapping_locus +25826 chr16 HAVANA gene 1795620 1827194 5975.0 - 0 ENSG00000063854.12 protein_coding HAGH 1 OTTHUMG00000128662.5 +25827 chr16 HAVANA gene 1826941 1840207 3039.0 + 0 ENSG00000180185.11 protein_coding FAHD1 2 OTTHUMG00000128663.2 +25828 chr16 HAVANA gene 1841020 1843547 220.0 - 0 ENSG00000260541.1 sense_overlapping AL031722.1 2 OTTHUMG00000176812.1 overlapping_locus +25829 chr16 HAVANA gene 1878285 1884233 713.0 - 0 ENSG00000281219.2 lincRNA LINC00254 2 OTTHUMG00000189509.2 overlapping_locus +25830 chr16 HAVANA gene 1833987 1884294 2303.0 - 0 ENSG00000162039.15 protein_coding MEIOB 1 OTTHUMG00000128683.4 overlapping_locus +25831 chr16 HAVANA gene 1889114 1890434 484.0 + 0 ENSG00000259947.1 lincRNA LINC02124 2 OTTHUMG00000176814.1 +25832 chr16 HAVANA gene 1911463 1918440 1273.0 - 0 ENSG00000162040.6 protein_coding HS3ST6 2 OTTHUMG00000047860.3 +25833 chr16 HAVANA gene 1938210 1943326 2157.0 - 0 ENSG00000198736.11 protein_coding MSRB1 1 OTTHUMG00000129143.2 +25834 chr16 HAVANA gene 1943974 1957606 2758.0 - 0 ENSG00000140986.7 protein_coding RPL3L 2 OTTHUMG00000128685.3 +25835 chr16 HAVANA gene 1959508 1961975 1070.0 + 0 ENSG00000140990.14 protein_coding NDUFB10 1 OTTHUMG00000128709.3 +25836 chr16 ENSEMBL gene 1962334 1962466 133.0 - 0 ENSG00000206811.1 snoRNA SNORA10 3 +25837 chr16 ENSEMBL gene 1962973 1963106 134.0 - 0 ENSG00000207405.1 snoRNA SNORA64 3 +25838 chr16 HAVANA gene 1963745 1964095 351.0 - 0 ENSG00000255513.1 transcribed_processed_pseudogene AC005363.1 1 OTTHUMG00000166081.1 pseudo_consens,overlapping_locus +25839 chr16 HAVANA gene 1962052 1964860 2413.0 - 0 ENSG00000140988.15 protein_coding RPS2 2 OTTHUMG00000128708.5 ncRNA_host,overlapping_locus +25840 chr16 ENSEMBL gene 1965184 1965310 127.0 + 0 ENSG00000273587.1 snoRNA SNORA78 3 +25841 chr16 HAVANA gene 1964959 1965509 551.0 + 0 ENSG00000255198.4 lincRNA SNHG9 2 OTTHUMG00000166082.2 ncRNA_host +25842 chr16 HAVANA gene 1966823 1968975 978.0 + 0 ENSG00000179580.9 protein_coding RNF151 1 OTTHUMG00000176852.2 +25843 chr16 HAVANA gene 1971655 1971896 242.0 - 0 ENSG00000277602.1 lincRNA AC005363.2 2 OTTHUMG00000186725.1 +25844 chr16 HAVANA gene 1972037 1982933 7139.0 + 0 ENSG00000183751.14 protein_coding TBL3 2 OTTHUMG00000128710.4 +25845 chr16 HAVANA gene 1978917 1984192 2159.0 - 0 ENSG00000196408.11 protein_coding NOXO1 2 OTTHUMG00000128707.3 +25846 chr16 HAVANA gene 1984207 1987749 2687.0 + 0 ENSG00000127554.12 protein_coding GFER 2 OTTHUMG00000176896.1 +25847 chr16 HAVANA gene 1984877 1990357 734.0 - 0 ENSG00000261790.1 lincRNA AC005606.2 2 OTTHUMG00000176897.1 +25848 chr16 HAVANA gene 1989660 1994275 3420.0 + 0 ENSG00000127561.14 protein_coding SYNGR3 2 OTTHUMG00000128711.4 +25849 chr16 HAVANA gene 1997654 1998374 504.0 + 0 ENSG00000260107.1 lincRNA AC005606.1 2 OTTHUMG00000176913.1 +25850 chr16 HAVANA gene 1997654 2009823 4701.0 - 0 ENSG00000167962.13 protein_coding ZNF598 2 OTTHUMG00000176955.4 +25851 chr16 ENSEMBL gene 2013181 2013476 296.0 + 0 ENSG00000265386.2 misc_RNA RN7SL219P 3 +25852 chr16 HAVANA gene 2009926 2020755 1168.0 + 0 ENSG00000183971.7 protein_coding NPW 2 OTTHUMG00000176914.3 ncRNA_host +25853 chr16 HAVANA gene 2025356 2039026 3550.0 + 0 ENSG00000065054.13 protein_coding SLC9A3R2 1 OTTHUMG00000176956.3 +25854 chr16 HAVANA gene 2039815 2047866 2430.0 - 0 ENSG00000065057.7 protein_coding NTHL1 1 OTTHUMG00000128744.3 +25855 chr16 HAVANA gene 2047465 2089487 19626.0 + 0 ENSG00000103197.17 protein_coding TSC2 1 OTTHUMG00000128745.21 +25856 chr16 ENSEMBL gene 2090195 2090284 90.0 - 0 ENSG00000221656.1 miRNA MIR1225 3 +25857 chr16 HAVANA gene 2091436 2095433 691.0 + 0 ENSG00000259933.6 sense_overlapping AC009065.2 2 OTTHUMG00000176957.3 +25858 chr16 HAVANA gene 2094830 2097026 596.0 - 0 ENSG00000261123.1 sense_intronic AC009065.5 2 OTTHUMG00000177007.1 overlapping_locus +25859 chr16 ENSEMBL gene 2106669 2106753 85.0 - 0 ENSG00000284008.1 miRNA MIR6511B1 3 +25860 chr16 HAVANA gene 2112335 2113342 456.0 + 0 ENSG00000261240.1 antisense AC009065.6 2 OTTHUMG00000177008.1 +25861 chr16 HAVANA gene 2119207 2120248 627.0 + 0 ENSG00000260447.1 antisense AC009065.3 2 OTTHUMG00000177009.1 +25862 chr16 ENSEMBL gene 2131851 2131950 100.0 + 0 ENSG00000200059.1 misc_RNA RF00019 3 +25863 chr16 ENSEMBL gene 2133119 2133204 86.0 + 0 ENSG00000265867.1 miRNA MIR4516 3 +25864 chr16 HAVANA gene 2088710 2135898 18532.0 - 0 ENSG00000008710.19 protein_coding PKD1 1 OTTHUMG00000155795.5 ncRNA_host,overlapping_locus +25865 chr16 ENSEMBL gene 2135977 2136129 153.0 - 0 ENSG00000264397.1 miRNA MIR3180-5 3 +25866 chr16 HAVANA gene 2140803 2154165 2488.0 + 0 ENSG00000167964.12 protein_coding RAB26 1 OTTHUMG00000128829.3 +25867 chr16 ENSEMBL gene 2155025 2155104 80.0 - 0 ENSG00000281010.1 snoRNA RF00345 3 +25868 chr16 ENSEMBL gene 2155023 2155105 83.0 - 0 ENSG00000206630.1 snoRNA SNORD60 3 +25869 chr16 HAVANA gene 2154797 2155358 342.0 - 0 ENSG00000260260.1 lincRNA SNHG19 2 OTTHUMG00000177010.1 ncRNA_host +25870 chr16 HAVANA gene 2155698 2178129 4489.0 + 0 ENSG00000131653.12 protein_coding TRAF7 2 OTTHUMG00000128826.3 +25871 chr16 HAVANA gene 2177180 2196525 5889.0 - 0 ENSG00000167971.15 protein_coding CASKIN1 2 OTTHUMG00000177045.3 +25872 chr16 HAVANA gene 2204248 2209416 4323.0 + 0 ENSG00000167965.17 protein_coding MLST8 2 OTTHUMG00000128827.5 +25873 chr16 HAVANA gene 2209253 2211950 2083.0 - 0 ENSG00000182685.7 protein_coding BRICD5 2 OTTHUMG00000128831.3 +25874 chr16 HAVANA gene 2211997 2212863 580.0 + 0 ENSG00000261532.1 lincRNA AC009065.7 2 OTTHUMG00000177046.1 +25875 chr16 HAVANA gene 2211997 2214807 2727.0 - 0 ENSG00000184207.8 protein_coding PGP 2 OTTHUMG00000177047.2 +25876 chr16 HAVANA gene 2223566 2235742 6402.0 + 0 ENSG00000167967.15 protein_coding E4F1 2 OTTHUMG00000177084.2 +25877 chr16 HAVANA gene 2235689 2236913 1225.0 - 0 ENSG00000259780.3 lincRNA AC009065.1 2 OTTHUMG00000177085.1 +25878 chr16 HAVANA gene 2235816 2238711 2194.0 + 0 ENSG00000167968.12 protein_coding DNASE1L2 2 OTTHUMG00000177086.2 +25879 chr16 HAVANA gene 2240487 2241818 788.0 + 0 ENSG00000261663.1 antisense AC009065.8 2 OTTHUMG00000177087.1 +25880 chr16 HAVANA gene 2239395 2252300 3234.0 - 0 ENSG00000167969.12 protein_coding ECI1 2 OTTHUMG00000128830.4 +25881 chr16 HAVANA gene 2253116 2268412 8582.0 - 0 ENSG00000205937.11 protein_coding RNPS1 2 OTTHUMG00000128828.4 +25882 chr16 ENSEMBL gene 2270713 2270772 60.0 + 0 ENSG00000266643.1 miRNA MIR3677 3 +25883 chr16 ENSEMBL gene 2271747 2271840 94.0 + 0 ENSG00000284346.1 miRNA MIR940 3 +25884 chr16 HAVANA gene 2268155 2273418 980.0 + 0 ENSG00000260778.5 lincRNA AC009065.4 2 OTTHUMG00000177116.1 ncRNA_host +25885 chr16 ENSEMBL gene 2274620 2274691 72.0 + 0 ENSG00000264004.1 miRNA MIR4717 3 +25886 chr16 HAVANA gene 2332313 2332732 420.0 - 0 ENSG00000243445.1 processed_pseudogene AC106820.1 1 OTTHUMG00000158080.1 pseudo_consens,overlapping_locus +25887 chr16 HAVANA gene 2275881 2340746 7804.0 - 0 ENSG00000167972.13 protein_coding ABCA3 1 OTTHUMG00000128845.2 overlapping_locus +25888 chr16 HAVANA gene 2339150 2426699 6574.0 + 0 ENSG00000238098.9 transcribed_unitary_pseudogene ABCA17P 2 OTTHUMG00000154348.4 +25889 chr16 HAVANA gene 2430702 2437103 963.0 - 0 ENSG00000285970.1 antisense AC106820.6 2 OTTHUMG00000192880.1 +25890 chr16 ENSEMBL gene 2445392 2445457 66.0 + 0 ENSG00000283180.1 miRNA MIR6767 3 +25891 chr16 HAVANA gene 2452581 2452977 397.0 - 0 ENSG00000260095.1 antisense AC106820.3 2 OTTHUMG00000177048.1 +25892 chr16 HAVANA gene 2429394 2458854 6309.0 + 0 ENSG00000162063.12 protein_coding CCNF 2 OTTHUMG00000128858.2 ncRNA_host +25893 chr16 HAVANA gene 2456252 2459979 879.0 - 0 ENSG00000260874.5 lincRNA AC106820.5 2 OTTHUMG00000177049.2 +25894 chr16 ENSEMBL gene 2463967 2464038 72.0 + 0 ENSG00000274805.1 miRNA MIR6768 3 +25895 chr16 HAVANA gene 2460080 2464963 2854.0 + 0 ENSG00000162062.14 protein_coding TEDC2 2 OTTHUMG00000128859.5 ncRNA_host +25896 chr16 HAVANA gene 2464950 2468213 3264.0 - 0 ENSG00000259895.1 antisense AC106820.2 2 OTTHUMG00000177050.1 +25897 chr16 HAVANA gene 2471499 2474145 1986.0 + 0 ENSG00000162068.1 protein_coding NTN3 2 OTTHUMG00000128867.1 +25898 chr16 HAVANA gene 2476558 2482173 5616.0 + 0 ENSG00000260293.2 sense_intronic AC106820.4 2 OTTHUMG00000177151.2 overlapping_locus +25899 chr16 HAVANA gene 2475051 2509560 12213.0 + 0 ENSG00000162065.13 protein_coding TBC1D24 2 OTTHUMG00000177150.6 overlapping_locus +25900 chr16 HAVANA gene 2516658 2517999 1342.0 + 0 ENSG00000279520.1 TEC AC093525.8 2 OTTHUMG00000177154.1 overlapping_locus +25901 chr16 HAVANA gene 2513870 2520218 1498.0 + 0 ENSG00000185883.11 protein_coding ATP6V0C 2 OTTHUMG00000128865.3 overlapping_locus +25902 chr16 HAVANA gene 2496032 2520218 1944.0 + 0 ENSG00000260272.1 protein_coding AC093525.2 1 OTTHUMG00000177152.1 overlapping_locus +25903 chr16 HAVANA gene 2513965 2527955 596.0 + 0 ENSG00000259784.1 protein_coding AC093525.1 2 OTTHUMG00000177153.2 overlapping_locus +25904 chr16 HAVANA gene 2530035 2531417 1383.0 - 0 ENSG00000205923.3 protein_coding CEMP1 2 OTTHUMG00000177160.1 +25905 chr16 HAVANA gene 2520357 2531422 4366.0 + 0 ENSG00000162066.15 protein_coding AMDHD2 1 OTTHUMG00000128866.5 overlapping_locus +25906 chr16 ENSEMBL gene 2531922 2532005 84.0 - 0 ENSG00000266232.1 miRNA MIR3178 3 +25907 chr16 HAVANA gene 2554060 2556060 2001.0 - 0 ENSG00000261613.2 antisense AC093525.6 2 OTTHUMG00000184093.1 +25908 chr16 HAVANA gene 2554975 2556105 572.0 + 0 ENSG00000261288.1 sense_intronic AC093525.5 2 OTTHUMG00000177283.1 overlapping_locus +25909 chr16 HAVANA gene 2561471 2565096 3626.0 - 0 ENSG00000269937.1 antisense AC093525.7 2 OTTHUMG00000177162.3 +25910 chr16 HAVANA gene 2569043 2571936 459.0 - 0 ENSG00000261140.1 antisense AC093525.4 2 OTTHUMG00000177163.1 overlapping_locus +25911 chr16 HAVANA gene 2571570 2572353 287.0 - 0 ENSG00000260436.1 antisense AC093525.3 2 OTTHUMG00000177164.1 overlapping_locus +25912 chr16 HAVANA gene 2575628 2577373 1746.0 - 0 ENSG00000279568.1 TEC AC093525.9 2 OTTHUMG00000177165.1 +25913 chr16 HAVANA gene 2578395 2579963 1569.0 + 0 ENSG00000280402.1 TEC AC093525.10 2 OTTHUMG00000177284.1 overlapping_locus +25914 chr16 HAVANA gene 2592514 2594563 2050.0 + 0 ENSG00000279162.1 TEC AC141586.5 2 OTTHUMG00000177285.1 overlapping_locus +25915 chr16 HAVANA gene 2597881 2599718 1838.0 - 0 ENSG00000261093.1 antisense AC141586.3 2 OTTHUMG00000177171.1 +25916 chr16 HAVANA gene 2537964 2603188 10926.0 + 0 ENSG00000140992.18 protein_coding PDPK1 1 OTTHUMG00000128874.7 overlapping_locus +25917 chr16 HAVANA gene 2620222 2621794 1573.0 - 0 ENSG00000279057.1 TEC AC141586.4 2 OTTHUMG00000177287.1 overlapping_locus +25918 chr16 HAVANA gene 2603350 2630494 2751.0 + 0 ENSG00000215154.6 transcribed_unprocessed_pseudogene AC141586.1 2 OTTHUMG00000128875.3 +25919 chr16 HAVANA gene 2616121 2643296 4426.0 - 0 ENSG00000205918.9 transcribed_unprocessed_pseudogene PDPK2P 2 OTTHUMG00000177286.3 overlapping_locus +25920 chr16 HAVANA gene 2644084 2645214 572.0 - 0 ENSG00000260176.1 lincRNA AC141586.2 2 OTTHUMG00000177289.1 +25921 chr16 HAVANA gene 2660349 2673444 8966.0 - 0 ENSG00000260565.6 processed_transcript ERVK13-1 2 OTTHUMG00000176054.2 +25922 chr16 HAVANA gene 2683106 2684764 1659.0 + 0 ENSG00000279901.1 TEC AC092117.2 2 OTTHUMG00000177290.1 overlapping_locus +25923 chr16 HAVANA gene 2682475 2709030 3420.0 + 0 ENSG00000167977.8 protein_coding KCTD5 2 OTTHUMG00000128930.3 overlapping_locus +25924 chr16 HAVANA gene 2712418 2720551 5921.0 - 0 ENSG00000172382.9 protein_coding PRSS27 2 OTTHUMG00000128929.2 +25925 chr16 HAVANA gene 2737076 2752600 5858.0 - 0 ENSG00000205913.6 antisense SRRM2-AS1 2 OTTHUMG00000177357.1 +25926 chr16 HAVANA gene 2752329 2772538 13266.0 + 0 ENSG00000167978.16 protein_coding SRRM2 1 OTTHUMG00000177358.5 +25927 chr16 HAVANA gene 2771414 2777297 1128.0 - 0 ENSG00000103363.14 protein_coding ELOB 2 OTTHUMG00000154125.2 +25928 chr16 HAVANA gene 2777319 2780568 3250.0 + 0 ENSG00000276791.1 lincRNA AC092117.1 2 OTTHUMG00000177359.2 +25929 chr16 HAVANA gene 2783953 2787948 2112.0 - 0 ENSG00000103355.13 protein_coding PRSS33 2 OTTHUMG00000177360.3 +25930 chr16 ENSEMBL gene 2796408 2796532 125.0 - 0 ENSG00000221719.1 snoRNA SNORA3C 3 +25931 chr16 HAVANA gene 2798485 2805302 1127.0 + 0 ENSG00000215148.8 protein_coding PRSS41 2 OTTHUMG00000128932.4 +25932 chr16 HAVANA gene 2822659 2822993 335.0 - 0 ENSG00000262154.1 processed_pseudogene EIF1P4 1 OTTHUMG00000177361.1 pseudo_consens +25933 chr16 HAVANA gene 2817180 2826304 1967.0 + 0 ENSG00000007038.10 protein_coding PRSS21 2 OTTHUMG00000128931.2 +25934 chr16 HAVANA gene 2830169 2839585 2665.0 + 0 ENSG00000162078.11 protein_coding ZG16B 1 OTTHUMG00000128933.3 +25935 chr16 HAVANA gene 2839568 2842744 2961.0 - 0 ENSG00000172460.16 transcribed_unitary_pseudogene PRSS30P 2 OTTHUMG00000191915.1 +25936 chr16 HAVANA gene 2852727 2858170 2387.0 - 0 ENSG00000005001.9 protein_coding PRSS22 1 OTTHUMG00000128961.2 +25937 chr16 HAVANA gene 2857898 2859726 265.0 + 0 ENSG00000263325.1 antisense AC003965.2 2 OTTHUMG00000177362.1 +25938 chr16 HAVANA gene 2866348 2867618 667.0 - 0 ENSG00000263280.1 lincRNA AC003965.1 2 OTTHUMG00000177363.1 +25939 chr16 HAVANA gene 2883186 2899382 1365.0 + 0 ENSG00000162076.12 protein_coding FLYWCH2 2 OTTHUMG00000128962.4 +25940 chr16 HAVANA gene 2922662 2923202 541.0 - 0 ENSG00000262959.2 processed_pseudogene RPL23AP86 1 OTTHUMG00000177365.2 pseudo_consens +25941 chr16 HAVANA gene 2911937 2951208 8419.0 + 0 ENSG00000059122.16 protein_coding FLYWCH1 1 OTTHUMG00000177364.3 +25942 chr16 HAVANA gene 2939714 2954276 510.0 - 0 ENSG00000262482.1 antisense AC004034.1 2 OTTHUMG00000177366.1 +25943 chr16 HAVANA gene 2963944 2968383 2614.0 + 0 ENSG00000131650.13 protein_coding KREMEN2 2 OTTHUMG00000128976.2 +25944 chr16 HAVANA gene 2969245 2973489 2972.0 + 0 ENSG00000162073.13 protein_coding PAQR4 1 OTTHUMG00000128977.2 +25945 chr16 HAVANA gene 2968024 2980539 5034.0 - 0 ENSG00000127564.16 protein_coding PKMYT1 1 OTTHUMG00000128975.3 +25946 chr16 HAVANA gene 2981175 2981591 417.0 - 0 ENSG00000274367.1 lincRNA AC004233.4 2 OTTHUMG00000186733.1 +25947 chr16 HAVANA gene 2988961 2994509 4284.0 + 0 ENSG00000262152.6 processed_transcript LINC00514 2 OTTHUMG00000183929.1 +25948 chr16 HAVANA gene 2988256 3002016 2062.0 + 0 ENSG00000270168.2 protein_coding AC004233.2 2 OTTHUMG00000177448.2 +25949 chr16 HAVANA gene 3003431 3005101 608.0 - 0 ENSG00000262362.1 sense_overlapping AC004233.1 2 OTTHUMG00000177449.1 +25950 chr16 HAVANA gene 3006120 3007388 1269.0 + 0 ENSG00000272079.2 lincRNA AC004233.3 2 OTTHUMG00000185716.2 +25951 chr16 HAVANA gene 3012456 3014505 2050.0 + 0 ENSG00000213937.3 protein_coding CLDN9 2 OTTHUMG00000129000.1 retrogene +25952 chr16 HAVANA gene 3014712 3020071 1739.0 - 0 ENSG00000184697.6 protein_coding CLDN6 2 OTTHUMG00000128999.2 retrogene +25953 chr16 HAVANA gene 3018445 3022383 1848.0 + 0 ENSG00000006327.13 protein_coding TNFRSF12A 2 OTTHUMG00000129001.2 +25954 chr16 HAVANA gene 3022620 3024286 1433.0 - 0 ENSG00000103145.10 protein_coding HCFC1R1 1 OTTHUMG00000177450.1 +25955 chr16 HAVANA gene 3024027 3027755 1860.0 + 0 ENSG00000131652.13 protein_coding THOC6 2 OTTHUMG00000177451.1 +25956 chr16 HAVANA gene 3027682 3036926 4690.0 - 0 ENSG00000162069.15 protein_coding BICDL2 2 OTTHUMG00000177452.2 +25957 chr16 HAVANA gene 3032481 3039133 3061.0 + 0 ENSG00000205890.3 antisense AC108134.1 2 OTTHUMG00000177453.1 +25958 chr16 HAVANA gene 3037403 3059370 7244.0 - 0 ENSG00000261971.7 antisense MMP25-AS1 2 OTTHUMG00000177474.3 +25959 chr16 HAVANA gene 3046681 3060726 4126.0 + 0 ENSG00000008516.16 protein_coding MMP25 2 OTTHUMG00000177475.1 +25960 chr16 ENSEMBL gene 3069523 3069651 129.0 + 0 ENSG00000252561.1 snRNA RNU1-125P 3 +25961 chr16 HAVANA gene 3065297 3082192 3209.0 + 0 ENSG00000008517.16 protein_coding IL32 2 OTTHUMG00000167498.6 ncRNA_host +25962 chr16 ENSEMBL gene 3086143 3086300 158.0 + 0 ENSG00000200204.1 snRNA RNU1-22P 3 +25963 chr16 HAVANA gene 3076911 3087100 1326.0 - 0 ENSG00000262370.5 lincRNA AC108134.3 2 OTTHUMG00000177477.1 +25964 chr16 HAVANA gene 3088890 3099317 3319.0 - 0 ENSG00000130182.7 protein_coding ZSCAN10 2 OTTHUMG00000177478.3 +25965 chr16 HAVANA gene 3106764 3109576 302.0 + 0 ENSG00000263011.1 sense_overlapping AC108134.4 2 OTTHUMG00000177490.1 +25966 chr16 HAVANA gene 3112560 3120517 2330.0 + 0 ENSG00000122386.10 protein_coding ZNF205 1 OTTHUMG00000148676.2 +25967 chr16 HAVANA gene 3110460 3134882 5145.0 - 0 ENSG00000263072.6 antisense ZNF213-AS1 2 OTTHUMG00000177518.2 +25968 chr16 HAVANA gene 3129777 3142805 6443.0 + 0 ENSG00000085644.13 protein_coding ZNF213 1 OTTHUMG00000177519.1 +25969 chr16 HAVANA gene 3144015 3149963 3538.0 + 0 ENSG00000228146.8 transcribed_unitary_pseudogene CASP16P 1 OTTHUMG00000177520.3 pseudo_consens +25970 chr16 HAVANA gene 3156736 3157483 748.0 - 0 ENSG00000261889.1 lincRNA AC108134.2 2 OTTHUMG00000177551.1 +25971 chr16 HAVANA gene 3181233 3184018 454.0 - 0 ENSG00000262521.1 lincRNA AJ003147.1 2 OTTHUMG00000177552.1 +25972 chr16 HAVANA gene 3204247 3205188 942.0 + 0 ENSG00000168124.2 protein_coding OR1F1 2 OTTHUMG00000133153.1 +25973 chr16 HAVANA gene 3215611 3216543 933.0 + 0 ENSG00000203581.7 unprocessed_pseudogene OR1F2P 2 OTTHUMG00000177554.2 +25974 chr16 HAVANA gene 3188212 3224779 629.0 + 0 ENSG00000262668.1 antisense AJ003147.2 2 OTTHUMG00000177553.1 +25975 chr16 HAVANA gene 3222325 3236221 7498.0 - 0 ENSG00000010539.11 protein_coding ZNF200 2 OTTHUMG00000129317.5 +25976 chr16 HAVANA gene 3242028 3256627 4819.0 - 0 ENSG00000103313.12 protein_coding MEFV 1 OTTHUMG00000129324.8 +25977 chr16 HAVANA gene 3263743 3267567 2468.0 + 0 ENSG00000281005.1 lincRNA LINC00921 2 OTTHUMG00000189522.1 overlapping_locus +25978 chr16 HAVANA gene 3273609 3275807 2199.0 + 0 ENSG00000279330.1 TEC AJ003147.3 2 OTTHUMG00000177555.1 overlapping_locus +25979 chr16 HAVANA gene 3292879 3293403 525.0 + 0 ENSG00000279031.1 TEC AC004232.3 2 OTTHUMG00000177556.1 overlapping_locus +25980 chr16 HAVANA gene 3263800 3301401 6945.0 + 0 ENSG00000006194.9 protein_coding ZNF263 1 OTTHUMG00000129323.3 overlapping_locus +25981 chr16 HAVANA gene 3298832 3305729 4197.0 - 0 ENSG00000140993.10 protein_coding TIGD7 1 OTTHUMG00000129325.3 +25982 chr16 HAVANA gene 3307573 3308393 821.0 - 0 ENSG00000262899.1 antisense AC004232.2 2 OTTHUMG00000177557.1 +25983 chr16 HAVANA gene 3308609 3308816 208.0 + 0 ENSG00000262554.1 transcribed_processed_pseudogene AC004232.1 2 OTTHUMG00000177558.1 overlapping_locus +25984 chr16 HAVANA gene 3305406 3318852 8063.0 + 0 ENSG00000162086.14 protein_coding ZNF75A 1 OTTHUMG00000129356.3 overlapping_locus +25985 chr16 HAVANA gene 3323192 3323925 734.0 - 0 ENSG00000262316.1 processed_pseudogene AC025283.1 1 OTTHUMG00000177559.1 pseudo_consens +25986 chr16 HAVANA gene 3355889 3357294 1406.0 + 0 ENSG00000168158.3 protein_coding OR2C1 2 OTTHUMG00000090505.3 +25987 chr16 HAVANA gene 3367719 3369246 1528.0 - 0 ENSG00000262118.1 processed_pseudogene MTCO1P28 2 OTTHUMG00000177597.1 +25988 chr16 HAVANA gene 3369957 3370906 950.0 - 0 ENSG00000263177.1 processed_pseudogene MTND1P8 2 OTTHUMG00000177598.1 +25989 chr16 HAVANA gene 3370979 3372740 1762.0 - 0 ENSG00000232196.3 protein_coding MTRNR2L4 2 OTTHUMG00000184964.2 +25990 chr16 ENSEMBL gene 3382113 3397745 2905.0 + 0 ENSG00000262621.5 protein_coding AC025283.2 3 +25991 chr16 HAVANA gene 3382081 3401065 4013.0 - 0 ENSG00000140987.19 protein_coding ZSCAN32 1 OTTHUMG00000129357.4 +25992 chr16 HAVANA gene 3401235 3409370 2876.0 + 0 ENSG00000103343.12 protein_coding ZNF174 2 OTTHUMG00000129358.2 overlapping_locus +25993 chr16 HAVANA gene 3432422 3443553 5524.0 - 0 ENSG00000167981.6 protein_coding ZNF597 2 OTTHUMG00000129359.4 +25994 chr16 HAVANA gene 3365099 3479550 3927.0 + 0 ENSG00000285329.1 protein_coding AC025283.3 2 OTTHUMG00000177580.3 overlapping_locus +25995 chr16 ENSEMBL gene 3485381 3485469 89.0 - 0 ENSG00000273776.1 miRNA MIR6126 3 +25996 chr16 HAVANA gene 3443611 3486963 5639.0 + 0 ENSG00000122390.18 protein_coding NAA60 1 OTTHUMG00000150268.8 overlapping_locus +25997 chr16 HAVANA gene 3493484 3495480 963.0 - 0 ENSG00000215131.10 protein_coding C16orf90 1 OTTHUMG00000154627.3 +25998 chr16 HAVANA gene 3496201 3496768 568.0 + 0 ENSG00000240311.1 processed_pseudogene AC004224.1 1 OTTHUMG00000158082.2 pseudo_consens,overlapping_locus +25999 chr16 HAVANA gene 3458071 3515564 529.0 + 0 ENSG00000263212.2 processed_transcript AC004224.2 2 OTTHUMG00000177721.2 overlapping_locus +26000 chr16 HAVANA gene 3533429 3534258 830.0 - 0 ENSG00000278942.1 TEC AC004494.2 2 OTTHUMG00000177560.1 +26001 chr16 HAVANA gene 3500924 3539048 7798.0 + 0 ENSG00000103351.12 protein_coding CLUAP1 2 OTTHUMG00000177581.4 overlapping_locus +26002 chr16 HAVANA gene 3542739 3545785 2955.0 + 0 ENSG00000262312.2 antisense AC004494.1 2 OTTHUMG00000177582.1 +26003 chr16 HAVANA gene 3539033 3577400 6686.0 - 0 ENSG00000167984.17 protein_coding NLRC3 2 OTTHUMG00000177561.6 +26004 chr16 HAVANA gene 3581181 3583266 329.0 + 0 ENSG00000261938.1 lincRNA AC006111.1 2 OTTHUMG00000177599.1 +26005 chr16 HAVANA gene 3581181 3611598 8591.0 - 0 ENSG00000188827.10 protein_coding SLX4 2 OTTHUMG00000074089.3 +26006 chr16 HAVANA gene 3650636 3651703 1068.0 - 0 ENSG00000263235.1 sense_overlapping AC006111.2 2 OTTHUMG00000177736.1 overlapping_locus +26007 chr16 HAVANA gene 3611728 3680143 13801.0 + 0 ENSG00000213918.10 protein_coding DNASE1 2 OTTHUMG00000129426.4 +26008 chr16 HAVANA gene 3686998 3687380 383.0 + 0 ENSG00000276754.1 antisense AC006111.3 2 OTTHUMG00000186755.1 +26009 chr16 HAVANA gene 3651639 3717597 5227.0 - 0 ENSG00000126602.10 protein_coding TRAP1 2 OTTHUMG00000129427.3 overlapping_locus +26010 chr16 HAVANA gene 3840528 3841010 483.0 + 0 ENSG00000262516.1 processed_pseudogene AC007151.1 1 OTTHUMG00000177722.2 pseudo_consens +26011 chr16 HAVANA gene 3725054 3880726 15492.0 - 0 ENSG00000005339.14 protein_coding CREBBP 1 OTTHUMG00000129431.6 +26012 chr16 HAVANA gene 3931217 3950586 2310.0 - 0 ENSG00000262185.2 lincRNA AC005736.1 2 OTTHUMG00000177610.2 +26013 chr16 HAVANA gene 4032012 4032936 244.0 + 0 ENSG00000263159.1 antisense AC005736.2 2 OTTHUMG00000177614.1 +26014 chr16 HAVANA gene 3953387 4116185 10358.0 - 0 ENSG00000162104.9 protein_coding ADCY9 2 OTTHUMG00000177612.2 +26015 chr16 HAVANA gene 4130555 4130820 266.0 + 0 ENSG00000262471.1 processed_pseudogene AC009171.1 1 OTTHUMG00000177615.1 pseudo_consens +26016 chr16 HAVANA gene 4180117 4183515 318.0 - 0 ENSG00000263105.1 lincRNA AC009171.2 2 OTTHUMG00000177616.1 +26017 chr16 HAVANA gene 4189374 4242080 5702.0 - 0 ENSG00000185739.13 protein_coding SRL 2 OTTHUMG00000177617.1 +26018 chr16 HAVANA gene 4243943 4253817 5237.0 - 0 ENSG00000262468.6 lincRNA LINC01569 2 OTTHUMG00000177618.3 +26019 chr16 HAVANA gene 4257186 4273075 7867.0 - 0 ENSG00000090447.11 protein_coding TFAP4 1 OTTHUMG00000129435.3 +26020 chr16 HAVANA gene 4324667 4328340 340.0 - 0 ENSG00000262686.1 lincRNA GLIS2-AS1 2 OTTHUMG00000177619.1 +26021 chr16 HAVANA gene 4335870 4337818 1949.0 - 0 ENSG00000262712.1 sense_intronic AC012676.1 2 OTTHUMG00000177620.1 overlapping_locus +26022 chr16 HAVANA gene 4314761 4339597 4469.0 + 0 ENSG00000126603.8 protein_coding GLIS2 2 OTTHUMG00000129467.1 +26023 chr16 HAVANA gene 4346694 4348648 1955.0 - 0 ENSG00000280063.1 TEC AC012676.5 2 OTTHUMG00000177665.1 overlapping_locus +26024 chr16 HAVANA gene 4331549 4355607 2383.0 - 0 ENSG00000217930.7 protein_coding PAM16 1 OTTHUMG00000129466.2 overlapping_locus +26025 chr16 HAVANA gene 4371848 4383528 2806.0 + 0 ENSG00000168140.4 protein_coding VASN 2 OTTHUMG00000129469.1 +26026 chr16 HAVANA gene 4340251 4420494 3815.0 - 0 ENSG00000103426.12 protein_coding CORO7-PAM16 2 OTTHUMG00000177664.1 overlapping_locus +26027 chr16 HAVANA gene 4354542 4425705 8793.0 - 0 ENSG00000262246.5 protein_coding CORO7 1 OTTHUMG00000129465.5 overlapping_locus +26028 chr16 HAVANA gene 4426902 4427380 479.0 + 0 ENSG00000277170.1 sense_intronic AC012676.3 2 OTTHUMG00000186758.1 overlapping_locus +26029 chr16 HAVANA gene 4430522 4431103 582.0 + 0 ENSG00000277440.1 sense_intronic AC012676.4 2 OTTHUMG00000186763.1 overlapping_locus +26030 chr16 HAVANA gene 4433202 4433387 186.0 - 0 ENSG00000275515.1 processed_pseudogene AC012676.2 2 OTTHUMG00000187870.2 +26031 chr16 HAVANA gene 4425805 4456775 7071.0 + 0 ENSG00000103423.13 protein_coding DNAJA3 1 OTTHUMG00000129470.3 overlapping_locus +26032 chr16 HAVANA gene 4461680 4495763 3541.0 - 0 ENSG00000153406.13 protein_coding NMRAL1 1 OTTHUMG00000129468.4 +26033 chr16 HAVANA gene 4474690 4510347 3793.0 + 0 ENSG00000103415.11 protein_coding HMOX2 2 OTTHUMG00000129473.3 +26034 chr16 HAVANA gene 4532216 4533670 1455.0 - 0 ENSG00000278434.1 sense_intronic AC023830.3 2 OTTHUMG00000186764.1 overlapping_locus +26035 chr16 HAVANA gene 4510675 4538828 4268.0 - 0 ENSG00000089486.16 protein_coding CDIP1 1 OTTHUMG00000177172.5 overlapping_locus +26036 chr16 HAVANA gene 4560001 4561662 1662.0 - 0 ENSG00000261789.1 antisense AC023830.2 2 OTTHUMG00000177156.1 +26037 chr16 HAVANA gene 4562814 4563128 315.0 - 0 ENSG00000261612.1 processed_pseudogene SUB1P3 1 OTTHUMG00000176542.2 pseudo_consens +26038 chr16 HAVANA gene 4556490 4600714 3823.0 + 0 ENSG00000205832.7 protein_coding C16orf96 2 OTTHUMG00000176519.2 +26039 chr16 HAVANA gene 4608883 4615027 3619.0 - 0 ENSG00000153443.12 protein_coding UBALD1 1 OTTHUMG00000129472.7 +26040 chr16 ENSEMBL gene 4633591 4633881 291.0 - 0 ENSG00000263955.2 misc_RNA RN7SL850P 3 +26041 chr16 HAVANA gene 4634329 4640623 1543.0 - 0 ENSG00000261442.1 antisense AC023830.1 2 OTTHUMG00000177157.1 +26042 chr16 ENSEMBL gene 4658851 4659151 301.0 + 0 ENSG00000278700.1 misc_RNA RF00017 3 +26043 chr16 ENSEMBL gene 4671318 4671390 73.0 + 0 ENSG00000276641.1 miRNA MIR6769A 3 +26044 chr16 HAVANA gene 4616493 4690974 10219.0 + 0 ENSG00000102858.12 protein_coding MGRN1 1 OTTHUMG00000176436.11 ncRNA_host +26045 chr16 HAVANA gene 4693694 4695859 2068.0 + 0 ENSG00000168101.14 protein_coding NUDT16L1 1 OTTHUMG00000129471.6 +26046 chr16 HAVANA gene 4696510 4734378 7868.0 - 0 ENSG00000168096.14 protein_coding ANKS3 1 OTTHUMG00000129478.10 overlapping_locus +26047 chr16 HAVANA gene 4734272 4749396 4656.0 + 0 ENSG00000166246.13 protein_coding C16orf71 1 OTTHUMG00000129480.6 +26048 chr16 HAVANA gene 4730115 4752565 556.0 - 0 ENSG00000266994.1 processed_transcript AC020663.1 2 OTTHUMG00000182296.1 overlapping_locus +26049 chr16 ENSEMBL gene 4756338 4756633 296.0 + 0 ENSG00000276096.1 misc_RNA RF00017 3 +26050 chr16 HAVANA gene 4748239 4767624 6465.0 - 0 ENSG00000103199.13 protein_coding ZNF500 1 OTTHUMG00000176543.6 overlapping_locus +26051 chr16 HAVANA gene 4777669 4788521 2100.0 - 0 ENSG00000140623.13 protein_coding SEPT12 2 OTTHUMG00000129481.6 overlapping_locus +26052 chr16 HAVANA gene 4788397 4796491 1762.0 + 0 ENSG00000267795.5 protein_coding SMIM22 2 OTTHUMG00000177849.2 +26053 chr16 HAVANA gene 4795265 4796532 720.0 - 0 ENSG00000267077.1 antisense AC020663.2 2 OTTHUMG00000177884.1 +26054 chr16 HAVANA gene 4777939 4801423 2234.0 - 0 ENSG00000285952.1 processed_transcript AC020663.4 2 OTTHUMG00000129479.10 overlapping_locus +26055 chr16 HAVANA gene 4796968 4802950 3683.0 - 0 ENSG00000067836.12 protein_coding ROGDI 1 OTTHUMG00000193363.1 overlapping_locus +26056 chr16 HAVANA gene 4839244 4840334 1091.0 - 0 ENSG00000275056.1 sense_intronic AC020663.3 2 OTTHUMG00000186765.1 overlapping_locus +26057 chr16 HAVANA gene 4803203 4847342 5470.0 - 0 ENSG00000140632.16 protein_coding GLYR1 2 OTTHUMG00000129530.6 overlapping_locus +26058 chr16 HAVANA gene 4846665 4882360 8551.0 + 0 ENSG00000118900.14 protein_coding UBN1 1 OTTHUMG00000129531.5 +26059 chr16 HAVANA gene 4882507 4960741 7686.0 - 0 ENSG00000118898.15 protein_coding PPL 2 OTTHUMG00000129528.8 +26060 chr16 HAVANA gene 4958317 5019158 6477.0 + 0 ENSG00000103184.11 protein_coding SEC14L5 2 OTTHUMG00000176942.3 overlapping_locus +26061 chr16 HAVANA gene 5024844 5034141 5484.0 - 0 ENSG00000103174.12 protein_coding NAGPA 1 OTTHUMG00000090515.9 +26062 chr16 HAVANA gene 5010909 5043999 2630.0 + 0 ENSG00000267072.2 lincRNA NAGPA-AS1 2 OTTHUMG00000177999.2 overlapping_locus +26063 chr16 HAVANA gene 5044122 5066110 2067.0 - 0 ENSG00000153446.15 protein_coding C16orf89 1 OTTHUMG00000159314.4 +26064 chr16 HAVANA gene 5078168 5078605 438.0 - 0 ENSG00000260882.1 processed_pseudogene AC026458.1 2 OTTHUMG00000177109.2 +26065 chr16 HAVANA gene 5033923 5087379 4553.0 + 0 ENSG00000033011.12 protein_coding ALG1 1 OTTHUMG00000129529.11 overlapping_locus +26066 chr16 HAVANA gene 5084304 5097808 3128.0 - 0 ENSG00000118894.14 protein_coding EEF2KMT 2 OTTHUMG00000129527.10 +26067 chr16 HAVANA gene 5098739 5142595 531.0 + 0 ENSG00000267070.1 lincRNA AC026458.2 2 OTTHUMG00000178000.1 +26068 chr16 HAVANA gene 5110793 5148685 1040.0 - 0 ENSG00000273963.1 unprocessed_pseudogene ENPP7P14 2 OTTHUMG00000187875.1 +26069 chr16 HAVANA gene 5207088 5207439 352.0 + 0 ENSG00000260431.2 processed_pseudogene AC074051.2 1 OTTHUMG00000177252.2 pseudo_consens +26070 chr16 HAVANA gene 5215394 5220594 272.0 - 0 ENSG00000261811.1 lincRNA LINC02164 2 OTTHUMG00000177110.1 +26071 chr16 HAVANA gene 5107672 5235822 943.0 + 0 ENSG00000285567.1 lincRNA AC074051.5 2 OTTHUMG00000192657.1 +26072 chr16 HAVANA gene 5260686 5261043 358.0 - 0 ENSG00000260817.2 processed_pseudogene AC074051.3 1 OTTHUMG00000177113.2 pseudo_consens +26073 chr16 HAVANA gene 5270174 5270954 781.0 + 0 ENSG00000242278.1 processed_pseudogene AC074051.1 1 OTTHUMG00000158083.1 pseudo_consens,overlapping_locus +26074 chr16 HAVANA gene 5289200 5289409 210.0 - 0 ENSG00000267182.1 processed_pseudogene SNRPCP20 2 OTTHUMG00000177253.1 +26075 chr16 HAVANA gene 5365797 5366688 892.0 + 0 ENSG00000261007.2 processed_pseudogene AC074051.4 1 OTTHUMG00000177114.2 pseudo_consens,overlapping_locus +26076 chr16 HAVANA gene 5601169 5616196 1107.0 - 0 ENSG00000260338.1 antisense LINC01570 2 OTTHUMG00000177115.1 +26077 chr16 ENSEMBL gene 5632467 5632566 100.0 + 0 ENSG00000273648.1 miRNA MIR8065 3 +26078 chr16 HAVANA gene 5838131 5838661 531.0 - 0 ENSG00000270440.1 processed_pseudogene AC012175.1 1 OTTHUMG00000184827.1 pseudo_consens +26079 chr16 HAVANA gene 6037210 6038977 1768.0 + 0 ENSG00000280000.1 TEC AC009135.2 2 OTTHUMG00000176668.1 overlapping_locus +26080 chr16 HAVANA gene 6056975 6092954 776.0 + 0 ENSG00000257180.1 sense_intronic AC009135.1 2 OTTHUMG00000170520.1 overlapping_locus +26081 chr16 HAVANA gene 6573767 6577359 572.0 + 0 ENSG00000260835.1 sense_intronic AC007223.1 2 OTTHUMG00000176671.1 overlapping_locus +26082 chr16 HAVANA gene 6703883 6705558 1676.0 + 0 ENSG00000278975.1 TEC AC007012.2 2 OTTHUMG00000176672.1 overlapping_locus +26083 chr16 HAVANA gene 6721786 6721960 175.0 + 0 ENSG00000259963.1 processed_pseudogene AC007012.1 2 OTTHUMG00000176673.1 overlapping_locus +26084 chr16 ENSEMBL gene 6748908 6748969 62.0 + 0 ENSG00000252080.1 snRNA RNU7-99P 3 +26085 chr16 ENSEMBL gene 6873899 6874005 107.0 + 0 ENSG00000200869.1 snRNA RNU6-457P 3 +26086 chr16 ENSEMBL gene 7004007 7004112 106.0 - 0 ENSG00000212189.1 snRNA RNU6-328P 3 +26087 chr16 HAVANA gene 7126293 7126639 347.0 - 0 ENSG00000240419.1 processed_pseudogene AC022206.1 1 OTTHUMG00000158084.1 pseudo_consens +26088 chr16 ENSEMBL gene 7431217 7431296 80.0 + 0 ENSG00000283584.1 snoRNA RF00537 3 +26089 chr16 HAVANA gene 7614230 7614992 567.0 - 0 ENSG00000261198.1 antisense AC005774.1 2 OTTHUMG00000176678.1 +26090 chr16 HAVANA gene 5239802 7713338 10121.0 + 0 ENSG00000078328.20 protein_coding RBFOX1 1 OTTHUMG00000129551.12 ncRNA_host +26091 chr16 ENSEMBL gene 7726841 7726951 111.0 - 0 ENSG00000252138.1 snoRNA RF00561 3 +26092 chr16 HAVANA gene 7888489 7894395 445.0 - 0 ENSG00000260289.1 lincRNA AC093515.1 2 OTTHUMG00000176683.1 +26093 chr16 HAVANA gene 8276263 8295700 600.0 - 0 ENSG00000260003.1 lincRNA AC018767.2 2 OTTHUMG00000176684.1 +26094 chr16 HAVANA gene 8298492 8299772 1281.0 + 0 ENSG00000261319.1 lincRNA LINC02152 2 OTTHUMG00000176058.1 +26095 chr16 HAVANA gene 8309962 8357860 481.0 + 0 ENSG00000260058.1 lincRNA AC018767.3 2 OTTHUMG00000176685.1 +26096 chr16 HAVANA gene 8369864 8376276 405.0 + 0 ENSG00000259819.1 lincRNA AC018767.1 2 OTTHUMG00000176686.1 +26097 chr16 HAVANA gene 8508069 8508585 456.0 + 0 ENSG00000260379.1 processed_pseudogene AC074052.1 1 OTTHUMG00000176687.1 pseudo_consens +26098 chr16 HAVANA gene 8526549 8532013 214.0 - 0 ENSG00000261066.1 lincRNA AC074052.2 2 OTTHUMG00000176688.1 +26099 chr16 HAVANA gene 8537605 8590193 1419.0 - 0 ENSG00000232258.6 protein_coding TMEM114 2 OTTHUMG00000172868.2 +26100 chr16 HAVANA gene 8621683 8649654 8254.0 + 0 ENSG00000067365.14 protein_coding METTL22 1 OTTHUMG00000129694.6 +26101 chr16 HAVANA gene 8666762 8667271 510.0 + 0 ENSG00000279357.1 TEC AC007224.2 2 OTTHUMG00000176763.1 +26102 chr16 ENSEMBL gene 8683254 8683551 298.0 + 0 ENSG00000243954.3 misc_RNA RN7SL743P 3 +26103 chr16 ENSEMBL gene 8705456 8705517 62.0 - 0 ENSG00000238417.1 snRNA RNU7-63P 3 +26104 chr16 HAVANA gene 8731416 8731559 144.0 - 0 ENSG00000260764.1 processed_pseudogene AC007224.1 2 OTTHUMG00000176764.1 +26105 chr16 HAVANA gene 8674565 8784575 9744.0 + 0 ENSG00000183044.11 protein_coding ABAT 1 OTTHUMG00000048201.5 ncRNA_host +26106 chr16 HAVANA gene 8780384 8797648 1978.0 - 0 ENSG00000184857.7 protein_coding TMEM186 2 OTTHUMG00000129696.2 +26107 chr16 HAVANA gene 8847650 8848724 430.0 - 0 ENSG00000260350.1 antisense AC012173.1 2 OTTHUMG00000176817.1 +26108 chr16 HAVANA gene 8788823 8849331 7645.0 + 0 ENSG00000140650.11 protein_coding PMM2 1 OTTHUMG00000129697.2 overlapping_locus +26109 chr16 HAVANA gene 8853312 8854347 409.0 + 0 ENSG00000259939.1 antisense AC022167.1 2 OTTHUMG00000176899.1 overlapping_locus +26110 chr16 HAVANA gene 8848105 8860456 2642.0 + 0 ENSG00000260276.2 antisense AC022167.2 2 OTTHUMG00000176818.2 overlapping_locus +26111 chr16 HAVANA gene 8852942 8869012 5577.0 - 0 ENSG00000153048.10 protein_coding CARHSP1 1 OTTHUMG00000129695.4 +26112 chr16 HAVANA gene 8869251 8870032 498.0 + 0 ENSG00000261481.1 antisense AC022167.4 2 OTTHUMG00000176902.1 +26113 chr16 HAVANA gene 8881634 8885351 1627.0 + 0 ENSG00000283516.1 protein_coding AC022167.5 2 OTTHUMG00000176581.3 +26114 chr16 HAVANA gene 8892094 8964514 7969.0 - 0 ENSG00000187555.14 protein_coding USP7 2 OTTHUMG00000176903.5 +26115 chr16 HAVANA gene 8962706 8966990 427.0 + 0 ENSG00000260979.1 lincRNA AC022167.3 2 OTTHUMG00000176992.1 +26116 chr16 HAVANA gene 9068554 9072412 753.0 + 0 ENSG00000261392.1 lincRNA AC087190.2 2 OTTHUMG00000177051.1 +26117 chr16 HAVANA gene 9105834 9107174 731.0 - 0 ENSG00000260349.1 antisense AC087190.1 2 OTTHUMG00000177053.1 +26118 chr16 HAVANA gene 9104848 9113181 8334.0 + 0 ENSG00000263244.2 3prime_overlapping_ncRNA AC087190.3 2 OTTHUMG00000178148.2 overlapping_locus +26119 chr16 HAVANA gene 9091648 9121640 15875.0 + 0 ENSG00000182831.11 protein_coding C16orf72 2 OTTHUMG00000178147.4 overlapping_locus +26120 chr16 HAVANA gene 9156402 9156881 480.0 - 0 ENSG00000220793.5 processed_pseudogene RPL21P119 2 OTTHUMG00000158086.1 +26121 chr16 HAVANA gene 9355588 9408093 5298.0 + 0 ENSG00000261617.1 lincRNA LINC02177 2 OTTHUMG00000177055.1 +26122 chr16 HAVANA gene 9441294 9444985 536.0 - 0 ENSG00000261397.1 lincRNA LINC01177 2 OTTHUMG00000177056.1 +26123 chr16 HAVANA gene 9446010 9455505 451.0 - 0 ENSG00000261075.1 lincRNA LINC01195 2 OTTHUMG00000177057.1 +26124 chr16 HAVANA gene 9466655 9517564 796.0 + 0 ENSG00000260071.1 lincRNA AC007221.1 2 OTTHUMG00000177058.1 +26125 chr16 ENSEMBL gene 9564390 9564497 108.0 - 0 ENSG00000200468.1 rRNA_pseudogene RNA5SP403 3 +26126 chr16 ENSEMBL gene 9600097 9600228 132.0 + 0 ENSG00000252927.1 rRNA_pseudogene RNA5SP404 3 +26127 chr16 HAVANA gene 9542045 9614894 948.0 + 0 ENSG00000283003.1 lincRNA AC007221.2 2 OTTHUMG00000191611.1 +26128 chr16 HAVANA gene 9666885 9676843 660.0 - 0 ENSG00000260362.1 lincRNA AC007218.1 2 OTTHUMG00000177060.1 +26129 chr16 HAVANA gene 9794637 9805571 179.0 + 0 ENSG00000283221.1 antisense AC007218.2 2 OTTHUMG00000191854.1 +26130 chr16 HAVANA gene 10033684 10037297 488.0 + 0 ENSG00000261810.1 antisense AC133565.1 2 OTTHUMG00000177088.1 +26131 chr16 HAVANA gene 10111382 10112885 1504.0 + 0 ENSG00000261647.1 processed_pseudogene IMPDH1P11 1 OTTHUMG00000177089.1 pseudo_consens +26132 chr16 HAVANA gene 9753404 10182754 16696.0 - 0 ENSG00000183454.16 protein_coding GRIN2A 2 OTTHUMG00000129721.9 +26133 chr16 ENSEMBL gene 10221775 10222073 299.0 - 0 ENSG00000266439.2 misc_RNA RN7SL493P 3 +26134 chr16 HAVANA gene 10214784 10227581 1860.0 - 0 ENSG00000285543.1 lincRNA AC022168.1 2 OTTHUMG00000192956.1 ncRNA_host +26135 chr16 HAVANA gene 10351440 10352752 1313.0 - 0 ENSG00000260756.1 lincRNA AC131649.1 2 OTTHUMG00000177090.1 +26136 chr16 HAVANA gene 10445309 10449747 4439.0 - 0 ENSG00000279662.1 TEC AC131649.2 2 OTTHUMG00000177092.1 +26137 chr16 HAVANA gene 10326434 10483638 6391.0 + 0 ENSG00000166669.13 protein_coding ATF7IP2 1 OTTHUMG00000129749.4 +26138 chr16 ENSEMBL gene 10496272 10496374 103.0 + 0 ENSG00000199482.1 snRNA RNU6-633P 3 +26139 chr16 HAVANA gene 10514842 10528202 502.0 - 0 ENSG00000260468.1 lincRNA LINC01290 2 OTTHUMG00000177103.1 +26140 chr16 HAVANA gene 10529440 10532082 533.0 + 0 ENSG00000256013.1 antisense AC027277.1 2 OTTHUMG00000168065.1 +26141 chr16 HAVANA gene 10576499 10578183 435.0 - 0 ENSG00000260310.1 sense_intronic AC027277.2 2 OTTHUMG00000177104.1 overlapping_locus +26142 chr16 HAVANA gene 10528422 10580698 8718.0 - 0 ENSG00000213853.9 protein_coding EMP2 1 OTTHUMG00000129752.3 overlapping_locus +26143 chr16 HAVANA gene 10691273 10692973 483.0 + 0 ENSG00000263279.1 antisense AC007595.1 2 OTTHUMG00000177343.1 +26144 chr16 HAVANA gene 10627501 10694945 1775.0 - 0 ENSG00000153060.7 protein_coding TEKT5 2 OTTHUMG00000129750.2 +26145 chr16 HAVANA gene 10718633 10719762 1130.0 - 0 ENSG00000263241.1 unprocessed_pseudogene MTCYBP33 2 OTTHUMG00000177344.1 +26146 chr16 HAVANA gene 10719833 10720015 183.0 + 0 ENSG00000262107.1 unprocessed_pseudogene MTND6P33 2 OTTHUMG00000177345.1 +26147 chr16 HAVANA gene 10720015 10721464 1450.0 - 0 ENSG00000261904.1 unprocessed_pseudogene MTND5P33 2 OTTHUMG00000177346.1 +26148 chr16 HAVANA gene 10721698 10723068 1371.0 - 0 ENSG00000262322.1 unprocessed_pseudogene MTND4P34 2 OTTHUMG00000177347.1 overlapping_locus +26149 chr16 HAVANA gene 10723065 10723355 291.0 - 0 ENSG00000262259.1 unprocessed_pseudogene MTND4LP24 2 OTTHUMG00000177348.1 overlapping_locus +26150 chr16 HAVANA gene 10723424 10723766 343.0 - 0 ENSG00000263196.1 unprocessed_pseudogene MTND3P13 2 OTTHUMG00000177349.1 +26151 chr16 HAVANA gene 10723836 10724617 782.0 - 0 ENSG00000262158.1 unprocessed_pseudogene MTCO3P24 2 OTTHUMG00000177350.1 +26152 chr16 HAVANA gene 10724620 10725296 677.0 - 0 ENSG00000262381.1 unprocessed_pseudogene MTATP6P24 2 OTTHUMG00000177351.1 +26153 chr16 HAVANA gene 10743786 10769351 1955.0 + 0 ENSG00000103274.10 protein_coding NUBP1 2 OTTHUMG00000129751.3 +26154 chr16 HAVANA gene 10760919 10818794 5281.0 - 0 ENSG00000166676.15 protein_coding TVP23A 2 OTTHUMG00000177389.5 +26155 chr16 HAVANA gene 10840384 10841544 1161.0 - 0 ENSG00000262488.1 processed_pseudogene AC133065.2 2 OTTHUMG00000177390.1 +26156 chr16 HAVANA gene 10864914 10888752 742.0 - 0 ENSG00000262151.1 antisense AC133065.1 2 OTTHUMG00000177391.1 +26157 chr16 HAVANA gene 10933903 10936280 2378.0 + 0 ENSG00000280153.1 TEC AC133065.3 2 OTTHUMG00000177392.1 +26158 chr16 HAVANA gene 10928891 10942460 6684.0 - 0 ENSG00000182108.10 protein_coding DEXI 2 OTTHUMG00000129785.4 overlapping_locus +26159 chr16 HAVANA gene 10866222 10943021 20757.0 + 0 ENSG00000179583.19 protein_coding CIITA 2 OTTHUMG00000129753.7 +26160 chr16 HAVANA gene 11027024 11027763 740.0 + 0 ENSG00000229917.2 processed_pseudogene RPL7P46 1 OTTHUMG00000152920.2 pseudo_consens,overlapping_locus +26161 chr16 HAVANA gene 11056556 11057034 479.0 + 0 ENSG00000274038.1 sense_intronic AC007014.2 2 OTTHUMG00000186777.1 overlapping_locus +26162 chr16 HAVANA gene 11066496 11071102 610.0 - 0 ENSG00000262020.1 antisense AC007014.1 2 OTTHUMG00000177398.1 +26163 chr16 HAVANA gene 10944488 11182189 12387.0 + 0 ENSG00000038532.15 protein_coding CLEC16A 1 OTTHUMG00000152915.7 overlapping_locus +26164 chr16 HAVANA gene 11196177 11224969 1055.0 + 0 ENSG00000263033.2 lincRNA AC007220.1 2 OTTHUMG00000177399.2 +26165 chr16 HAVANA gene 11242653 11243552 900.0 + 0 ENSG00000263179.1 processed_pseudogene HNRNPCP4 1 OTTHUMG00000177408.1 pseudo_consens +26166 chr16 HAVANA gene 11254405 11256200 1796.0 - 0 ENSG00000185338.5 protein_coding SOCS1 2 OTTHUMG00000129792.2 +26167 chr16 HAVANA gene 11267748 11269533 1786.0 - 0 ENSG00000178279.3 protein_coding TNP2 2 OTTHUMG00000172315.2 +26168 chr16 HAVANA gene 11273218 11273641 424.0 - 0 ENSG00000178257.3 protein_coding PRM3 2 OTTHUMG00000172316.2 +26169 chr16 ENSEMBL gene 11274113 11274236 124.0 - 0 ENSG00000212228.1 snoRNA RF00554 3 +26170 chr16 HAVANA gene 11275639 11276480 724.0 - 0 ENSG00000122304.10 protein_coding PRM2 2 OTTHUMG00000172317.1 +26171 chr16 HAVANA gene 11280836 11281350 424.0 - 0 ENSG00000175646.3 protein_coding PRM1 2 OTTHUMG00000090521.1 +26172 chr16 ENSEMBL gene 11306440 11306527 88.0 - 0 ENSG00000221801.1 miRNA MIR548H2 3 +26173 chr16 ENSEMBL gene 11315067 11315178 112.0 + 0 ENSG00000199668.1 misc_RNA RF00019 3 +26174 chr16 HAVANA gene 11341809 11345211 1134.0 - 0 ENSG00000263080.1 antisense AC009121.2 2 OTTHUMG00000177409.1 +26175 chr16 HAVANA gene 11348143 11349321 1095.0 - 0 ENSG00000262703.1 antisense AC009121.1 2 OTTHUMG00000177410.1 +26176 chr16 HAVANA gene 11380859 11381118 260.0 - 0 ENSG00000262636.1 processed_pseudogene AC099489.2 2 OTTHUMG00000177412.1 overlapping_locus +26177 chr16 HAVANA gene 11249619 11381662 3632.0 + 0 ENSG00000175643.9 protein_coding RMI2 2 OTTHUMG00000129793.4 ncRNA_host +26178 chr16 HAVANA gene 11465260 11473174 2279.0 + 0 ENSG00000262999.1 antisense AC099489.3 2 OTTHUMG00000177414.1 +26179 chr16 HAVANA gene 11359845 11527245 12027.0 - 0 ENSG00000188897.9 protein_coding AC099489.1 1 OTTHUMG00000178167.5 +26180 chr16 HAVANA gene 11547722 11636381 5060.0 - 0 ENSG00000189067.12 protein_coding LITAF 1 OTTHUMG00000177415.6 +26181 chr16 HAVANA gene 11668414 11679159 3312.0 + 0 ENSG00000184602.5 protein_coding SNN 2 OTTHUMG00000090535.1 +26182 chr16 HAVANA gene 11679080 11742878 4292.0 - 0 ENSG00000153066.12 protein_coding TXNDC11 2 OTTHUMG00000177467.2 +26183 chr16 HAVANA gene 11741910 11744506 2597.0 + 0 ENSG00000262420.3 antisense AC007613.1 2 OTTHUMG00000177468.1 +26184 chr16 ENSEMBL gene 11753666 11753948 283.0 - 0 ENSG00000274505.1 misc_RNA RF00017 3 +26185 chr16 HAVANA gene 11750586 11797267 7076.0 - 0 ENSG00000122299.11 protein_coding ZC3H7A 1 OTTHUMG00000129825.3 ncRNA_host +26186 chr16 HAVANA gene 11797468 11798275 808.0 + 0 ENSG00000277369.1 lincRNA AC010654.1 2 OTTHUMG00000186782.1 +26187 chr16 HAVANA gene 11819829 11828845 1328.0 - 0 ENSG00000262117.5 lincRNA BCAR4 2 OTTHUMG00000177469.1 +26188 chr16 HAVANA gene 11833850 11851585 6167.0 - 0 ENSG00000171490.12 protein_coding RSL1D1 1 OTTHUMG00000129824.5 +26189 chr16 HAVANA gene 11881075 11882569 1495.0 - 0 ENSG00000261560.1 sense_intronic AC007216.3 2 OTTHUMG00000172957.1 overlapping_locus +26190 chr16 HAVANA gene 11851649 11895611 562.0 + 0 ENSG00000263307.1 antisense AC007216.4 2 OTTHUMG00000177500.1 +26191 chr16 HAVANA gene 11903923 11904137 215.0 - 0 ENSG00000260318.1 processed_pseudogene COX6CP1 1 OTTHUMG00000172958.1 pseudo_consens,overlapping_locus +26192 chr16 HAVANA gene 11908208 11908916 384.0 + 0 ENSG00000261216.1 antisense AC007216.2 2 OTTHUMG00000172959.1 +26193 chr16 HAVANA gene 11868128 11916082 8018.0 - 0 ENSG00000103342.12 protein_coding GSPT1 2 OTTHUMG00000172956.2 overlapping_locus +26194 chr16 HAVANA gene 11926199 11926307 109.0 + 0 ENSG00000277458.1 unprocessed_pseudogene AC007216.5 2 OTTHUMG00000187878.1 +26195 chr16 HAVANA gene 11965107 11968068 1118.0 + 0 ENSG00000048462.10 protein_coding TNFRSF17 1 OTTHUMG00000129826.2 +26196 chr16 HAVANA gene 11968508 11968743 236.0 - 0 ENSG00000260224.1 processed_pseudogene UBL5P4 1 OTTHUMG00000172960.1 pseudo_consens,overlapping_locus +26197 chr16 HAVANA gene 11927373 11976643 2719.0 - 0 ENSG00000234719.8 protein_coding NPIPB2 2 OTTHUMG00000166261.5 overlapping_locus +26198 chr16 HAVANA gene 11976851 11977850 601.0 - 0 ENSG00000260488.1 antisense AC007216.1 2 OTTHUMG00000172962.1 +26199 chr16 HAVANA gene 12081237 12081902 431.0 + 0 ENSG00000241641.1 processed_pseudogene RPS23P6 2 OTTHUMG00000158098.1 overlapping_locus +26200 chr16 HAVANA gene 12086746 12090302 1974.0 - 0 ENSG00000175604.2 antisense AC007601.1 2 OTTHUMG00000173257.1 +26201 chr16 HAVANA gene 12093627 12095307 502.0 - 0 ENSG00000261293.1 antisense AC007601.2 2 OTTHUMG00000172961.2 +26202 chr16 ENSEMBL gene 12297197 12297323 127.0 - 0 ENSG00000238685.1 snoRNA RF01225 3 +26203 chr16 HAVANA gene 12366982 12372582 539.0 - 0 ENSG00000261394.1 antisense AC007598.2 2 OTTHUMG00000173258.1 +26204 chr16 HAVANA gene 12372812 12373899 448.0 + 0 ENSG00000260723.1 sense_intronic AC007598.1 2 OTTHUMG00000173259.1 overlapping_locus +26205 chr16 HAVANA gene 12374355 12376032 1678.0 + 0 ENSG00000278979.1 TEC AC007598.3 2 OTTHUMG00000173260.1 overlapping_locus +26206 chr16 HAVANA gene 12545482 12546684 520.0 + 0 ENSG00000260601.1 sense_intronic AC131391.1 2 OTTHUMG00000173261.1 overlapping_locus +26207 chr16 HAVANA gene 12556353 12557694 563.0 - 0 ENSG00000259876.1 antisense AC010333.1 2 OTTHUMG00000177166.1 +26208 chr16 HAVANA gene 11976737 12574289 11298.0 + 0 ENSG00000048471.13 protein_coding SNX29 1 OTTHUMG00000129827.3 overlapping_locus +26209 chr16 HAVANA gene 12560756 12611044 698.0 - 0 ENSG00000259899.1 antisense AC010333.2 2 OTTHUMG00000177167.1 +26210 chr16 HAVANA gene 12614451 12614852 402.0 + 0 ENSG00000274834.1 lincRNA AC010333.3 2 OTTHUMG00000186788.1 +26211 chr16 ENSEMBL gene 12720321 12720371 51.0 + 0 ENSG00000264733.1 miRNA MIR4718 3 +26212 chr16 HAVANA gene 12745873 12757835 786.0 + 0 ENSG00000260378.1 antisense AC109597.1 2 OTTHUMG00000177169.1 +26213 chr16 HAVANA gene 12759282 12761162 927.0 + 0 ENSG00000261158.1 antisense AC109597.2 2 OTTHUMG00000177170.1 +26214 chr16 HAVANA gene 12659799 12804017 6484.0 - 0 ENSG00000103381.11 protein_coding CPPED1 2 OTTHUMG00000167711.3 +26215 chr16 ENSEMBL gene 12842487 12842610 124.0 - 0 ENSG00000199474.1 snoRNA RF00443 3 +26216 chr16 HAVANA gene 12881170 12881493 324.0 + 0 ENSG00000241932.1 processed_pseudogene AC092324.1 1 OTTHUMG00000158100.1 pseudo_consens +26217 chr16 HAVANA gene 13197606 13204907 443.0 - 0 ENSG00000262116.1 antisense AC009134.1 2 OTTHUMG00000177333.1 +26218 chr16 HAVANA gene 12901620 13240413 10155.0 + 0 ENSG00000237515.8 protein_coding SHISA9 2 OTTHUMG00000154258.8 +26219 chr16 HAVANA gene 13331368 13332583 686.0 - 0 ENSG00000262011.1 antisense AC003009.1 2 OTTHUMG00000177335.1 +26220 chr16 HAVANA gene 13458326 13458698 373.0 + 0 ENSG00000262235.2 processed_pseudogene TMF1P1 1 OTTHUMG00000177336.2 pseudo_consens,overlapping_locus +26221 chr16 HAVANA gene 13246316 13562918 826.0 + 0 ENSG00000262801.5 lincRNA U91319.1 2 OTTHUMG00000177334.1 overlapping_locus +26222 chr16 HAVANA gene 13730137 13779760 1013.0 - 0 ENSG00000262267.5 lincRNA U95743.1 2 OTTHUMG00000177354.1 +26223 chr16 HAVANA gene 13922332 13922679 348.0 - 0 ENSG00000242307.1 processed_pseudogene RPS26P52 1 OTTHUMG00000158102.1 pseudo_consens +26224 chr16 HAVANA gene 13930677 13935635 4959.0 - 0 ENSG00000262732.1 antisense AC010401.1 2 OTTHUMG00000177375.1 +26225 chr16 HAVANA gene 13920157 13952345 8460.0 + 0 ENSG00000175595.14 protein_coding ERCC4 2 OTTHUMG00000048194.3 +26226 chr16 HAVANA gene 13953155 13954825 582.0 + 0 ENSG00000263234.1 lincRNA AC010401.2 2 OTTHUMG00000177376.1 +26227 chr16 HAVANA gene 14009280 14016016 1101.0 - 0 ENSG00000262097.1 lincRNA LINC02185 2 OTTHUMG00000177377.1 +26228 chr16 HAVANA gene 14018880 14021077 885.0 - 0 ENSG00000261856.1 lincRNA LINC02186 2 OTTHUMG00000177378.1 +26229 chr16 HAVANA gene 14150833 14153235 2403.0 + 0 ENSG00000276564.1 lincRNA AC130650.2 2 OTTHUMG00000177380.1 overlapping_locus +26230 chr16 HAVANA gene 14191820 14200277 415.0 - 0 ENSG00000262529.1 antisense AC130650.1 2 OTTHUMG00000177381.1 +26231 chr16 HAVANA gene 14200357 14200979 623.0 + 0 ENSG00000262470.2 processed_pseudogene TVP23CP2 1 OTTHUMG00000177382.2 pseudo_consens,overlapping_locus +26232 chr16 HAVANA gene 14071321 14266773 16578.0 + 0 ENSG00000186260.16 protein_coding MRTFB 1 OTTHUMG00000177379.3 overlapping_locus +26233 chr16 ENSEMBL gene 14275508 14275600 93.0 + 0 ENSG00000201075.2 misc_RNA RF00019 3 +26234 chr16 ENSEMBL gene 14303967 14304049 83.0 + 0 ENSG00000207639.1 miRNA MIR193B 3 +26235 chr16 ENSEMBL gene 14309285 14309371 87.0 + 0 ENSG00000199130.3 miRNA MIR365A 3 +26236 chr16 HAVANA gene 14301389 14331067 6049.0 + 0 ENSG00000262454.3 lincRNA MIR193BHG 2 OTTHUMG00000177423.4 ncRNA_host +26237 chr16 HAVANA gene 14363109 14370266 518.0 - 0 ENSG00000260009.1 lincRNA LINC02130 2 OTTHUMG00000176060.1 +26238 chr16 HAVANA gene 14407668 14418872 1275.0 - 0 ENSG00000263257.2 lincRNA AC040173.1 1 OTTHUMG00000177424.3 +26239 chr16 ENSEMBL gene 14601823 14602094 272.0 - 0 ENSG00000242430.3 misc_RNA RN7SL274P 3 +26240 chr16 HAVANA gene 14435701 14632728 4382.0 - 0 ENSG00000140694.16 protein_coding PARN 2 OTTHUMG00000173199.2 ncRNA_host +26241 chr16 ENSEMBL gene 14643788 14643849 62.0 + 0 ENSG00000238964.1 snRNA RNU7-125P 3 +26242 chr16 HAVANA gene 14632815 14669236 4401.0 + 0 ENSG00000103429.10 protein_coding BFAR 1 OTTHUMG00000129848.4 ncRNA_host +26243 chr16 HAVANA gene 14672545 14694669 1116.0 - 0 ENSG00000069764.9 protein_coding PLA2G10 2 OTTHUMG00000048069.4 +26244 chr16 HAVANA gene 14695567 14707055 579.0 - 0 ENSG00000261523.1 antisense AC009167.1 2 OTTHUMG00000173200.1 +26245 chr16 HAVANA gene 14708944 14726338 1473.0 + 0 ENSG00000224712.12 protein_coding NPIPA3 2 OTTHUMG00000166262.6 +26246 chr16 HAVANA gene 14727282 14733347 355.0 - 0 ENSG00000254609.1 unprocessed_pseudogene AC136443.1 2 OTTHUMG00000166263.1 +26247 chr16 HAVANA gene 14734685 14746177 579.0 - 0 ENSG00000261695.1 antisense AC136443.4 2 OTTHUMG00000173201.1 +26248 chr16 HAVANA gene 14748066 14765413 1428.0 + 0 ENSG00000254852.8 protein_coding NPIPA2 2 OTTHUMG00000166264.4 +26249 chr16 HAVANA gene 14766402 14770075 258.0 - 0 ENSG00000255037.1 unprocessed_pseudogene AC136443.2 2 OTTHUMG00000166265.1 +26250 chr16 HAVANA gene 14820792 14824702 1077.0 - 0 ENSG00000255277.3 transcribed_unprocessed_pseudogene ABCC6P2 2 OTTHUMG00000166266.2 +26251 chr16 HAVANA gene 14862380 14862749 370.0 - 0 ENSG00000270734.1 processed_pseudogene AC136443.5 1 OTTHUMG00000184823.1 pseudo_consens +26252 chr16 HAVANA gene 14833681 14896160 5819.0 + 0 ENSG00000103512.14 protein_coding NOMO1 2 OTTHUMG00000090541.2 +26253 chr16 ENSEMBL gene 14901508 14901591 84.0 + 0 ENSG00000284305.1 miRNA MIR3179-1 3 +26254 chr16 HAVANA gene 14901499 14902174 676.0 + 0 ENSG00000257264.5 lincRNA AC136443.3 2 OTTHUMG00000170530.1 ncRNA_host +26255 chr16 ENSEMBL gene 14907717 14907781 65.0 + 0 ENSG00000263918.1 miRNA MIR3670-1 3 +26256 chr16 ENSEMBL gene 14911220 14911313 94.0 + 0 ENSG00000265537.1 miRNA MIR3180-1 3 +26257 chr16 HAVANA gene 14909887 14911345 1459.0 - 0 ENSG00000258354.1 lincRNA AC138932.2 2 OTTHUMG00000170531.1 +26258 chr16 ENSEMBL gene 14915457 14915556 100.0 - 0 ENSG00000207425.1 misc_RNA RF00019 3 +26259 chr16 ENSEMBL gene 14925937 14926003 67.0 + 0 ENSG00000275259.1 miRNA MIR6511A1 3 +26260 chr16 ENSEMBL gene 14930820 14930879 60.0 + 0 ENSG00000278265.1 miRNA MIR6770-1 3 +26261 chr16 HAVANA gene 14911551 14935708 6830.0 + 0 ENSG00000183458.13 transcribed_unprocessed_pseudogene AC138932.1 2 OTTHUMG00000166303.2 overlapping_locus +26262 chr16 HAVANA gene 14922802 14952060 7277.0 + 0 ENSG00000183426.16 protein_coding NPIPA1 2 OTTHUMG00000090663.6 ncRNA_host,overlapping_locus +26263 chr16 HAVANA gene 14953012 14953120 109.0 - 0 ENSG00000273804.1 unprocessed_pseudogene AC138932.4 2 OTTHUMG00000187879.1 +26264 chr16 HAVANA gene 14988259 14990160 1902.0 - 0 ENSG00000261819.1 processed_pseudogene AC138932.3 2 OTTHUMG00000173202.1 +26265 chr16 ENSEMBL gene 15010321 15010397 77.0 - 0 ENSG00000238728.1 miRNA MIR1972-1 3 +26266 chr16 HAVANA gene 15015828 15016390 563.0 - 0 ENSG00000275910.1 antisense AC138932.5 2 OTTHUMG00000186790.1 +26267 chr16 HAVANA gene 15037853 15056079 3540.0 - 0 ENSG00000157045.8 protein_coding NTAN1 2 OTTHUMG00000129849.3 +26268 chr16 HAVANA gene 15060022 15094317 4156.0 - 0 ENSG00000085721.12 protein_coding RRN3 2 OTTHUMG00000129847.2 +26269 chr16 HAVANA gene 15094411 15109197 2598.0 + 0 ENSG00000260735.2 transcribed_processed_pseudogene AC139256.1 2 OTTHUMG00000173204.2 overlapping_locus +26270 chr16 HAVANA gene 15104312 15123498 1437.0 - 0 ENSG00000188599.17 transcribed_unprocessed_pseudogene NPIPP1 2 OTTHUMG00000184230.2 overlapping_locus +26271 chr16 HAVANA gene 15104723 15131601 3043.0 - 0 ENSG00000270580.5 processed_transcript PKD1P6-NPIPP1 2 OTTHUMG00000168168.2 overlapping_locus +26272 chr16 ENSEMBL gene 15134075 15134145 71.0 - 0 ENSG00000283346.1 miRNA MIR6511B2 3 +26273 chr16 HAVANA gene 14974591 15139339 9410.0 + 0 ENSG00000179889.18 protein_coding PDXDC1 1 OTTHUMG00000166304.5 overlapping_locus +26274 chr16 ENSEMBL gene 15150697 15150796 100.0 + 0 ENSG00000207294.1 misc_RNA RF00019 3 +26275 chr16 HAVANA gene 15125242 15154564 6015.0 - 0 ENSG00000250251.6 transcribed_unprocessed_pseudogene PKD1P6 2 OTTHUMG00000156664.4 overlapping_locus +26276 chr16 ENSEMBL gene 15154850 15155002 153.0 - 0 ENSG00000264115.1 miRNA MIR3180-4 3 +26277 chr16 HAVANA gene 15154903 15157020 2118.0 + 0 ENSG00000257391.1 lincRNA AC126763.1 2 OTTHUMG00000170535.1 +26278 chr16 HAVANA gene 15358978 15362674 263.0 + 0 ENSG00000277770.1 unprocessed_pseudogene AC137803.1 2 OTTHUMG00000187881.1 +26279 chr16 HAVANA gene 15363624 15381047 1520.0 - 0 ENSG00000183793.13 protein_coding NPIPA5 2 OTTHUMG00000166305.3 +26280 chr16 HAVANA gene 15395754 15413268 6009.0 + 0 ENSG00000156968.8 protein_coding MPV17L 2 OTTHUMG00000129882.3 overlapping_locus +26281 chr16 HAVANA gene 15395754 15515348 1052.0 + 0 ENSG00000261130.5 protein_coding AC140504.1 2 OTTHUMG00000173205.2 overlapping_locus +26282 chr16 HAVANA gene 15608474 15610563 530.0 + 0 ENSG00000257769.1 antisense AC026401.1 2 OTTHUMG00000169372.1 overlapping_locus +26283 chr16 ENSEMBL gene 15611030 15611095 66.0 - 0 ENSG00000284184.1 miRNA MIR6506 3 +26284 chr16 HAVANA gene 15434295 15625028 3688.0 + 0 ENSG00000166780.10 protein_coding C16orf45 1 OTTHUMG00000129883.5 overlapping_locus +26285 chr16 HAVANA gene 15594386 15643166 10919.0 - 0 ENSG00000166783.21 protein_coding MARF1 1 OTTHUMG00000129884.6 ncRNA_host +26286 chr16 ENSEMBL gene 15643294 15643372 79.0 + 0 ENSG00000283736.1 miRNA MIR484 3 +26287 chr16 HAVANA gene 15683290 15684570 503.0 + 0 ENSG00000262380.1 sense_intronic AC026401.2 2 OTTHUMG00000177383.1 overlapping_locus +26288 chr16 HAVANA gene 15701237 15702118 882.0 + 0 ENSG00000280206.1 lincRNA AC026401.3 2 OTTHUMG00000184128.1 overlapping_locus +26289 chr16 HAVANA gene 15643267 15726353 5512.0 + 0 ENSG00000072864.14 protein_coding NDE1 1 OTTHUMG00000129885.5 ncRNA_host,overlapping_locus +26290 chr16 HAVANA gene 15726674 15732993 836.0 + 0 ENSG00000263335.1 antisense AF001548.2 2 OTTHUMG00000177385.1 +26291 chr16 HAVANA gene 15741151 15741791 550.0 + 0 ENSG00000263065.1 antisense AF001548.1 2 OTTHUMG00000177386.1 +26292 chr16 HAVANA gene 15790975 15792717 1743.0 - 0 ENSG00000280429.1 TEC AF001548.3 2 OTTHUMG00000177388.1 overlapping_locus +26293 chr16 HAVANA gene 15703172 15857033 16104.0 - 0 ENSG00000133392.17 protein_coding MYH11 1 OTTHUMG00000129935.4 overlapping_locus +26294 chr16 ENSEMBL gene 15877163 15877266 104.0 - 0 ENSG00000206778.1 snRNA RNU6-213P 3 +26295 chr16 HAVANA gene 15885029 15886158 536.0 + 0 ENSG00000262171.1 antisense AC130651.1 2 OTTHUMG00000177352.1 +26296 chr16 HAVANA gene 15865720 15888625 2391.0 - 0 ENSG00000133393.12 protein_coding FOPNL 2 OTTHUMG00000129923.4 ncRNA_host +26297 chr16 HAVANA gene 15931697 15932294 598.0 - 0 ENSG00000215003.4 processed_pseudogene RPL15P20 1 OTTHUMG00000158104.2 pseudo_consens +26298 chr16 HAVANA gene 16094192 16095209 413.0 - 0 ENSG00000241067.2 processed_pseudogene RPL17P40 1 OTTHUMG00000158110.2 pseudo_consens +26299 chr16 HAVANA gene 15949577 16143074 7575.0 + 0 ENSG00000103222.18 protein_coding ABCC1 2 OTTHUMG00000048267.5 +26300 chr16 HAVANA gene 16148928 16223522 7569.0 - 0 ENSG00000091262.15 protein_coding ABCC6 2 OTTHUMG00000129967.5 +26301 chr16 HAVANA gene 16223027 16224261 542.0 + 0 ENSG00000262332.1 antisense AC136624.1 2 OTTHUMG00000177316.1 +26302 chr16 HAVANA gene 16260866 16261235 370.0 - 0 ENSG00000263029.1 processed_pseudogene AC136624.3 1 OTTHUMG00000177318.1 pseudo_consens +26303 chr16 HAVANA gene 16290135 16292242 567.0 - 0 ENSG00000262848.1 antisense AC136624.2 2 OTTHUMG00000177319.1 overlapping_locus +26304 chr16 HAVANA gene 16232495 16294814 8274.0 + 0 ENSG00000103226.17 protein_coding NOMO3 2 OTTHUMG00000177317.22 +26305 chr16 ENSEMBL gene 16300159 16300242 84.0 + 0 ENSG00000257381.3 miRNA MIR3179-2 3 +26306 chr16 ENSEMBL gene 16306370 16306434 65.0 + 0 ENSG00000264722.1 miRNA MIR3670-2 3 +26307 chr16 ENSEMBL gene 16309879 16309966 88.0 + 0 ENSG00000265373.2 miRNA MIR3180-2 3 +26308 chr16 HAVANA gene 16308542 16310000 1459.0 - 0 ENSG00000257366.1 lincRNA AC138969.2 2 OTTHUMG00000170527.1 +26309 chr16 ENSEMBL gene 16314112 16314211 100.0 - 0 ENSG00000206706.1 misc_RNA RF00019 3 +26310 chr16 ENSEMBL gene 16324588 16324654 67.0 + 0 ENSG00000278221.1 miRNA MIR6511A2 3 +26311 chr16 ENSEMBL gene 16329305 16329364 60.0 + 0 ENSG00000277698.1 miRNA MIR6770-2 3 +26312 chr16 HAVANA gene 16310341 16334190 6805.0 + 0 ENSG00000244257.5 unprocessed_pseudogene PKD1P1 2 OTTHUMG00000133625.1 overlapping_locus +26313 chr16 HAVANA gene 16317444 16350590 7897.0 + 0 ENSG00000183889.12 protein_coding PKD1P1 2 OTTHUMG00000133624.3 ncRNA_host,overlapping_locus +26314 chr16 HAVANA gene 16351545 16351653 109.0 - 0 ENSG00000277920.1 unprocessed_pseudogene AC138969.3 2 OTTHUMG00000187884.1 +26315 chr16 ENSEMBL gene 16368876 16368942 67.0 + 0 ENSG00000276311.1 miRNA MIR6511A3 3 +26316 chr16 HAVANA gene 16356224 16377507 9932.0 + 0 ENSG00000227827.3 unprocessed_pseudogene AC138969.1 2 OTTHUMG00000166306.1 +26317 chr16 HAVANA gene 16379055 16393954 1401.0 + 0 ENSG00000214967.5 protein_coding NPIPA7 2 OTTHUMG00000166307.2 +26318 chr16 HAVANA gene 16394912 16398594 258.0 - 0 ENSG00000261181.1 unprocessed_pseudogene AC136619.1 2 OTTHUMG00000173318.1 +26319 chr16 HAVANA gene 16541217 16541847 631.0 - 0 ENSG00000261362.1 processed_pseudogene AC136619.2 1 OTTHUMG00000173319.1 pseudo_consens +26320 chr16 HAVANA gene 16658227 16664135 674.0 + 0 ENSG00000260126.1 lincRNA AC092326.1 2 OTTHUMG00000177276.1 +26321 chr16 HAVANA gene 16760905 16762465 1561.0 + 0 ENSG00000279729.1 TEC AC092326.2 2 OTTHUMG00000177277.1 +26322 chr16 HAVANA gene 16952502 16953468 967.0 - 0 ENSG00000261748.1 processed_pseudogene AC098965.1 1 OTTHUMG00000177270.1 pseudo_consens +26323 chr16 HAVANA gene 17082295 17085049 2755.0 - 0 ENSG00000279490.1 TEC AC109446.4 2 OTTHUMG00000176102.1 +26324 chr16 HAVANA gene 17094351 17094927 497.0 - 0 ENSG00000260675.1 unprocessed_pseudogene AC109446.2 1 OTTHUMG00000177271.1 pseudo_consens +26325 chr16 HAVANA gene 17096202 17096421 220.0 - 0 ENSG00000260405.1 processed_pseudogene AC109446.1 1 OTTHUMG00000177272.1 pseudo_consens +26326 chr16 HAVANA gene 17134504 17138736 641.0 + 0 ENSG00000261448.1 antisense AC109446.3 2 OTTHUMG00000177273.1 +26327 chr16 HAVANA gene 17192863 17194232 1370.0 - 0 ENSG00000279410.1 TEC AC099494.1 2 OTTHUMG00000177590.1 overlapping_locus +26328 chr16 HAVANA gene 17227023 17228000 978.0 - 0 ENSG00000279415.1 TEC AC099494.2 2 OTTHUMG00000177274.1 overlapping_locus +26329 chr16 HAVANA gene 17249674 17251395 1722.0 - 0 ENSG00000279620.1 TEC AC099494.3 2 OTTHUMG00000177275.1 overlapping_locus +26330 chr16 HAVANA gene 17445825 17446380 556.0 - 0 ENSG00000275927.1 sense_intronic AC009152.1 2 OTTHUMG00000186791.1 overlapping_locus +26331 chr16 HAVANA gene 17453470 17456236 1185.0 + 0 ENSG00000285850.1 lincRNA AC009152.3 2 OTTHUMG00000192886.1 +26332 chr16 HAVANA gene 17101769 17470881 11004.0 - 0 ENSG00000103489.11 protein_coding XYLT1 2 OTTHUMG00000129975.3 overlapping_locus +26333 chr16 HAVANA gene 17540331 17540985 551.0 - 0 ENSG00000260945.1 lincRNA AC109495.1 2 OTTHUMG00000177266.1 +26334 chr16 HAVANA gene 17825252 17826906 1655.0 + 0 ENSG00000261555.1 lincRNA AC025277.1 2 OTTHUMG00000177267.1 +26335 chr16 HAVANA gene 17932720 17933275 556.0 + 0 ENSG00000228071.4 processed_pseudogene RPL7P47 1 OTTHUMG00000158115.2 pseudo_consens +26336 chr16 HAVANA gene 17961597 17962370 774.0 + 0 ENSG00000280283.1 TEC AC010601.2 2 OTTHUMG00000176104.1 +26337 chr16 HAVANA gene 17933189 18151595 740.0 - 0 ENSG00000259929.5 lincRNA AC010601.1 2 OTTHUMG00000177258.1 overlapping_locus +26338 chr16 HAVANA gene 18170356 18170959 604.0 + 0 ENSG00000260933.1 processed_pseudogene AC091489.2 1 OTTHUMG00000177260.1 pseudo_consens +26339 chr16 HAVANA gene 18002806 18173063 691.0 - 0 ENSG00000260242.1 lincRNA AC091489.1 2 OTTHUMG00000177259.1 overlapping_locus +26340 chr16 HAVANA gene 18201501 18201956 456.0 + 0 ENSG00000278994.1 TEC AC008785.1 2 OTTHUMG00000177261.1 +26341 chr16 HAVANA gene 18313294 18316984 267.0 + 0 ENSG00000276484.1 unprocessed_pseudogene AC126755.5 2 OTTHUMG00000187886.1 +26342 chr16 HAVANA gene 18317942 18336736 1606.0 - 0 ENSG00000214940.8 protein_coding NPIPA8 2 OTTHUMG00000166284.3 overlapping_locus +26343 chr16 ENSEMBL gene 18344013 18344079 67.0 - 0 ENSG00000273613.1 miRNA MIR6511A4 3 +26344 chr16 HAVANA gene 18318008 18344283 4082.0 - 0 ENSG00000285628.1 processed_transcript AC126755.7 2 OTTHUMG00000166285.4 ncRNA_host,overlapping_locus +26345 chr16 HAVANA gene 18334400 18352476 6804.0 - 0 ENSG00000205746.9 transcribed_unprocessed_pseudogene AC126755.1 2 OTTHUMG00000193367.1 overlapping_locus +26346 chr16 HAVANA gene 18357026 18357136 111.0 + 0 ENSG00000277647.1 unprocessed_pseudogene AC126755.6 2 OTTHUMG00000187887.1 +26347 chr16 HAVANA gene 18358086 18379331 3030.0 - 0 ENSG00000233024.7 protein_coding AC126755.2 2 OTTHUMG00000166286.3 overlapping_locus +26348 chr16 ENSEMBL gene 18379351 18379410 60.0 - 0 ENSG00000275391.1 miRNA MIR6770-3 3 +26349 chr16 ENSEMBL gene 18397937 18398036 100.0 + 0 ENSG00000206927.1 misc_RNA RF00019 3 +26350 chr16 HAVANA gene 18374521 18401940 10291.0 - 0 ENSG00000254681.6 transcribed_unprocessed_pseudogene PKD1P5 2 OTTHUMG00000166287.2 overlapping_locus +26351 chr16 ENSEMBL gene 18402178 18402271 94.0 - 0 ENSG00000266291.1 miRNA MIR3180-3 3 +26352 chr16 HAVANA gene 18402146 18403604 1459.0 + 0 ENSG00000257563.1 lincRNA AC126755.4 2 OTTHUMG00000170522.1 +26353 chr16 ENSEMBL gene 18405698 18405762 65.0 - 0 ENSG00000265776.1 miRNA MIR3670-3 3 +26354 chr16 HAVANA gene 18411309 18411851 543.0 - 0 ENSG00000257527.1 lincRNA AC126755.3 2 OTTHUMG00000170523.1 +26355 chr16 ENSEMBL gene 18411894 18411977 84.0 - 0 ENSG00000266454.1 miRNA MIR3179-3 3 +26356 chr16 ENSEMBL gene 18488301 18488365 65.0 - 0 ENSG00000274025.1 miRNA MIR3670-4 3 +26357 chr16 ENSEMBL gene 18494493 18494576 84.0 - 0 ENSG00000277014.1 miRNA MIR3179-4 3 +26358 chr16 HAVANA gene 18533418 18533817 400.0 + 0 ENSG00000262974.1 processed_pseudogene AC136618.2 1 OTTHUMG00000177603.1 pseudo_consens +26359 chr16 HAVANA gene 18417325 18562211 6801.0 - 0 ENSG00000185164.14 protein_coding NOMO2 2 OTTHUMG00000131366.2 ncRNA_host +26360 chr16 HAVANA gene 18570448 18571683 699.0 - 0 ENSG00000260550.2 lincRNA AC136618.1 2 OTTHUMG00000177190.2 +26361 chr16 HAVANA gene 18571162 18598328 3431.0 + 0 ENSG00000256340.8 transcribed_unprocessed_pseudogene ABCC6P1 2 OTTHUMG00000177192.2 +26362 chr16 HAVANA gene 18781295 18790383 6679.0 - 0 ENSG00000134419.15 protein_coding RPS15A 1 OTTHUMG00000131365.6 overlapping_locus +26363 chr16 HAVANA gene 18788063 18801519 764.0 - 0 ENSG00000260342.2 protein_coding AC138811.2 1 OTTHUMG00000177194.4 overlapping_locus +26364 chr16 HAVANA gene 18791667 18801678 3666.0 - 0 ENSG00000170540.14 protein_coding ARL6IP1 1 OTTHUMG00000131367.5 overlapping_locus +26365 chr16 HAVANA gene 18803083 18812181 361.0 + 0 ENSG00000260017.1 antisense AC138811.1 2 OTTHUMG00000177195.1 +26366 chr16 HAVANA gene 18804853 18926454 25988.0 - 0 ENSG00000157106.16 protein_coding SMG1 2 OTTHUMG00000166900.7 +26367 chr16 HAVANA gene 18926863 18937043 463.0 + 0 ENSG00000260352.1 antisense AC092287.1 2 OTTHUMG00000177196.1 +26368 chr16 ENSEMBL gene 19012157 19012263 107.0 + 0 ENSG00000207167.1 snRNA RNU6-1340P 3 +26369 chr16 HAVANA gene 18983934 19063942 5638.0 + 0 ENSG00000170537.12 protein_coding TMC7 2 OTTHUMG00000131456.4 ncRNA_host +26370 chr16 HAVANA gene 19065991 19066694 704.0 + 0 ENSG00000261357.1 lincRNA AC099518.2 2 OTTHUMG00000176109.1 +26371 chr16 HAVANA gene 19062499 19067691 696.0 - 0 ENSG00000261465.6 antisense AC099518.4 2 OTTHUMG00000177197.2 +26372 chr16 HAVANA gene 19067599 19080095 4120.0 + 0 ENSG00000167186.10 protein_coding COQ7 1 OTTHUMG00000131455.5 +26373 chr16 HAVANA gene 19086856 19098110 841.0 + 0 ENSG00000260430.1 lincRNA AC099518.1 2 OTTHUMG00000177198.1 +26374 chr16 HAVANA gene 19111035 19111484 450.0 - 0 ENSG00000278389.1 lincRNA AC099518.6 2 OTTHUMG00000186792.1 +26375 chr16 HAVANA gene 19119976 19121629 1137.0 - 0 ENSG00000261759.1 antisense AC099518.5 2 OTTHUMG00000177200.1 +26376 chr16 HAVANA gene 19113932 19121629 7440.0 + 0 ENSG00000205730.6 protein_coding ITPRIPL2 2 OTTHUMG00000177199.3 overlapping_locus +26377 chr16 HAVANA gene 19114002 19173578 908.0 + 0 ENSG00000261427.6 processed_transcript AC099518.3 2 OTTHUMG00000177217.2 overlapping_locus +26378 chr16 HAVANA gene 19167971 19268334 7538.0 + 0 ENSG00000103528.16 protein_coding SYT17 1 OTTHUMG00000131461.5 overlapping_locus +26379 chr16 HAVANA gene 19315164 19316526 1363.0 + 0 ENSG00000259871.1 sense_intronic AC130456.1 2 OTTHUMG00000177219.1 overlapping_locus +26380 chr16 HAVANA gene 19285739 19322145 3403.0 + 0 ENSG00000261210.7 protein_coding CLEC19A 1 OTTHUMG00000177218.3 +26381 chr16 HAVANA gene 19334011 19337804 1489.0 + 0 ENSG00000285869.1 lincRNA AC130456.8 2 OTTHUMG00000193123.1 +26382 chr16 HAVANA gene 19392213 19393468 1256.0 - 0 ENSG00000280265.1 TEC AC130456.7 2 OTTHUMG00000177222.1 overlapping_locus +26383 chr16 HAVANA gene 19343647 19401693 2278.0 - 0 ENSG00000259925.1 lincRNA AC130456.2 2 OTTHUMG00000177221.2 overlapping_locus +26384 chr16 HAVANA gene 19410729 19411662 665.0 - 0 ENSG00000260681.1 antisense AC130456.4 2 OTTHUMG00000177223.1 +26385 chr16 HAVANA gene 19476916 19487899 633.0 - 0 ENSG00000260592.1 antisense AC130456.3 2 OTTHUMG00000177225.1 +26386 chr16 ENSEMBL gene 19498610 19498747 138.0 + 0 ENSG00000222750.1 snRNA RNU4-46P 3 +26387 chr16 HAVANA gene 19410496 19499113 6393.0 + 0 ENSG00000103534.16 protein_coding TMC5 1 OTTHUMG00000131458.4 ncRNA_host +26388 chr16 HAVANA gene 19501689 19502286 510.0 + 0 ENSG00000260934.1 antisense AC130456.5 2 OTTHUMG00000177226.1 +26389 chr16 HAVANA gene 19503861 19504625 765.0 + 0 ENSG00000279747.1 TEC AC130456.6 2 OTTHUMG00000184108.1 +26390 chr16 HAVANA gene 19501689 19522145 4416.0 - 0 ENSG00000006007.11 protein_coding GDE1 2 OTTHUMG00000131454.6 +26391 chr16 HAVANA gene 19523811 19553408 10142.0 + 0 ENSG00000103540.16 protein_coding CCP110 1 OTTHUMG00000131459.6 +26392 chr16 HAVANA gene 19694035 19694428 394.0 - 0 ENSG00000276571.1 antisense AC002550.2 2 OTTHUMG00000186793.1 +26393 chr16 HAVANA gene 19555240 19706793 9767.0 + 0 ENSG00000103544.14 protein_coding VPS35L 1 OTTHUMG00000167925.10 overlapping_locus +26394 chr16 HAVANA gene 19706351 19715383 1379.0 + 0 ENSG00000261312.1 antisense AC002550.1 2 OTTHUMG00000177250.1 overlapping_locus +26395 chr16 HAVANA gene 19701934 19718235 7761.0 - 0 ENSG00000103550.13 protein_coding KNOP1 2 OTTHUMG00000177249.7 +26396 chr16 HAVANA gene 19761172 19766099 994.0 - 0 ENSG00000261195.1 antisense AC027130.1 2 OTTHUMG00000177256.1 +26397 chr16 HAVANA gene 19819504 19819628 125.0 - 0 ENSG00000261939.1 processed_pseudogene LARP7P2 2 OTTHUMG00000177625.1 +26398 chr16 HAVANA gene 19716456 19858467 4993.0 + 0 ENSG00000174628.16 protein_coding IQCK 2 OTTHUMG00000131453.5 +26399 chr16 HAVANA gene 19856691 19886167 6667.0 - 0 ENSG00000167191.11 protein_coding GPRC5B 2 OTTHUMG00000131460.4 +26400 chr16 HAVANA gene 20031485 20073917 1712.0 - 0 ENSG00000180269.7 protein_coding GPR139 2 OTTHUMG00000177690.1 +26401 chr16 HAVANA gene 20155648 20158391 2744.0 + 0 ENSG00000277211.1 processed_pseudogene AC092132.2 2 OTTHUMG00000187889.1 +26402 chr16 HAVANA gene 20208925 20209525 352.0 + 0 ENSG00000263253.1 lincRNA AC092132.1 2 OTTHUMG00000177691.1 +26403 chr16 HAVANA gene 20238972 20239247 276.0 - 0 ENSG00000227624.2 processed_pseudogene SNRPEP3 1 OTTHUMG00000177692.1 pseudo_consens +26404 chr16 HAVANA gene 20309572 20327808 4048.0 - 0 ENSG00000169347.16 protein_coding GP2 2 OTTHUMG00000131489.3 +26405 chr16 HAVANA gene 20333052 20356301 3409.0 - 0 ENSG00000169344.15 protein_coding UMOD 1 OTTHUMG00000131488.4 +26406 chr16 HAVANA gene 20385957 20391164 615.0 + 0 ENSG00000263237.1 antisense AC106796.1 2 OTTHUMG00000177421.1 +26407 chr16 HAVANA gene 20359170 20404737 2276.0 - 0 ENSG00000169340.9 protein_coding PDILT 2 OTTHUMG00000131487.2 +26408 chr16 HAVANA gene 20409534 20441336 3963.0 + 0 ENSG00000183549.10 protein_coding ACSM5 2 OTTHUMG00000131551.3 +26409 chr16 HAVANA gene 20440266 20447000 1069.0 - 0 ENSG00000262995.1 antisense AC137056.1 2 OTTHUMG00000177693.1 +26410 chr16 HAVANA gene 20451461 20487667 8193.0 + 0 ENSG00000183747.11 protein_coding ACSM2A 2 OTTHUMG00000177401.4 +26411 chr16 HAVANA gene 20487702 20489659 1958.0 + 0 ENSG00000280306.1 TEC AC137056.2 2 OTTHUMG00000177402.1 +26412 chr16 HAVANA gene 20536226 20576427 8158.0 - 0 ENSG00000066813.14 protein_coding ACSM2B 2 OTTHUMG00000131555.4 +26413 chr16 HAVANA gene 20580999 20586640 642.0 + 0 ENSG00000260201.2 lincRNA AC141273.1 2 OTTHUMG00000177227.3 +26414 chr16 HAVANA gene 20586550 20607107 2438.0 - 0 ENSG00000260762.1 unprocessed_pseudogene ACSM5P1 2 OTTHUMG00000177228.1 +26415 chr16 HAVANA gene 20616409 20616532 124.0 - 0 ENSG00000275315.1 unprocessed_pseudogene AC141273.3 2 OTTHUMG00000187891.1 +26416 chr16 HAVANA gene 20618205 20620758 130.0 - 0 ENSG00000274730.1 unprocessed_pseudogene AC141273.2 2 OTTHUMG00000187892.1 +26417 chr16 HAVANA gene 20623237 20698890 2871.0 - 0 ENSG00000166743.9 protein_coding ACSM1 2 OTTHUMG00000131550.3 +26418 chr16 HAVANA gene 20720994 20722281 1288.0 - 0 ENSG00000285303.1 transcribed_unprocessed_pseudogene AC004381.3 2 OTTHUMG00000192558.1 overlapping_locus +26419 chr16 HAVANA gene 20711473 20732990 1329.0 + 0 ENSG00000283399.1 unprocessed_pseudogene AC004381.2 2 OTTHUMG00000191638.1 +26420 chr16 HAVANA gene 20702816 20742084 6501.0 - 0 ENSG00000066654.13 protein_coding THUMPD1 2 OTTHUMG00000131558.3 overlapping_locus +26421 chr16 HAVANA gene 20743663 20766620 351.0 - 0 ENSG00000260510.1 antisense AC004381.1 2 OTTHUMG00000177229.1 +26422 chr16 ENSEMBL gene 20784509 20784615 107.0 + 0 ENSG00000200893.1 snRNA RNU6-944P 3 +26423 chr16 HAVANA gene 20610243 20797581 7822.0 + 0 ENSG00000005187.11 protein_coding ACSM3 1 OTTHUMG00000131552.6 ncRNA_host +26424 chr16 ENSEMBL gene 20823443 20823537 95.0 + 0 ENSG00000275908.1 snRNA RF00618 3 +26425 chr16 HAVANA gene 20806429 20849668 4114.0 + 0 ENSG00000005189.19 protein_coding REXO5 1 OTTHUMG00000131556.5 ncRNA_host +26426 chr16 HAVANA gene 20780193 20900349 6761.0 - 0 ENSG00000196678.13 protein_coding ERI2 2 OTTHUMG00000131557.4 overlapping_locus +26427 chr16 HAVANA gene 20854925 20900384 6248.0 - 0 ENSG00000188215.9 protein_coding DCUN1D3 2 OTTHUMG00000131553.3 overlapping_locus +26428 chr16 HAVANA gene 20899868 20925006 3593.0 + 0 ENSG00000102897.9 protein_coding LYRM1 1 OTTHUMG00000131554.3 +26429 chr16 HAVANA gene 21120758 21130108 405.0 + 0 ENSG00000263331.1 antisense AC008551.1 2 OTTHUMG00000177369.1 +26430 chr16 HAVANA gene 20933111 21159441 14960.0 - 0 ENSG00000158486.13 protein_coding DNAH3 2 OTTHUMG00000090677.3 +26431 chr16 HAVANA gene 21158377 21180616 2558.0 + 0 ENSG00000011638.10 protein_coding TMEM159 1 OTTHUMG00000131559.3 +26432 chr16 HAVANA gene 21194847 21205977 573.0 + 0 ENSG00000262983.1 antisense AF001550.1 2 OTTHUMG00000177370.1 +26433 chr16 HAVANA gene 21197450 21214510 3453.0 - 0 ENSG00000103310.10 protein_coding ZP2 2 OTTHUMG00000090681.3 +26434 chr16 HAVANA gene 21233665 21253845 4352.0 + 0 ENSG00000175311.6 protein_coding ANKS4B 2 OTTHUMG00000177371.2 +26435 chr16 HAVANA gene 21299903 21300506 217.0 + 0 ENSG00000283421.1 unitary_pseudogene AF001550.2 2 OTTHUMG00000191645.1 +26436 chr16 HAVANA gene 21238874 21303083 3782.0 - 0 ENSG00000103316.10 protein_coding CRYM 2 OTTHUMG00000090707.3 +26437 chr16 HAVANA gene 21300849 21339037 2746.0 + 0 ENSG00000189149.12 transcribed_unitary_pseudogene CRYM-AS1 2 OTTHUMG00000191646.1 overlapping_locus +26438 chr16 HAVANA gene 21347139 21352138 255.0 + 0 ENSG00000257403.2 unprocessed_pseudogene AC008740.1 2 OTTHUMG00000170413.2 +26439 chr16 HAVANA gene 21376648 21386064 1007.0 + 0 ENSG00000158482.10 unprocessed_pseudogene SNX29P1 2 OTTHUMG00000170414.2 +26440 chr16 HAVANA gene 21401089 21401198 110.0 + 0 ENSG00000276548.1 unprocessed_pseudogene AC008740.2 2 OTTHUMG00000187893.1 +26441 chr16 HAVANA gene 21402237 21448567 4717.0 - 0 ENSG00000169246.16 protein_coding NPIPB3 2 OTTHUMG00000163506.5 overlapping_locus +26442 chr16 ENSEMBL gene 21506049 21506135 87.0 - 0 ENSG00000265462.1 miRNA MIR3680-1 3 +26443 chr16 HAVANA gene 21519830 21520365 536.0 - 0 ENSG00000258186.2 transcribed_processed_pseudogene SLC7A5P2 1 OTTHUMG00000170388.2 pseudo_consens,overlapping_locus +26444 chr16 HAVANA gene 21446683 21520444 7107.0 - 0 ENSG00000180747.15 transcribed_unprocessed_pseudogene SMG1P3 2 OTTHUMG00000164329.2 overlapping_locus +26445 chr16 HAVANA gene 21526824 21531141 431.0 - 0 ENSG00000273956.1 lincRNA AC005632.4 2 OTTHUMG00000186796.1 +26446 chr16 HAVANA gene 21538487 21538794 308.0 + 0 ENSG00000271609.1 processed_pseudogene AC005632.3 1 OTTHUMG00000184812.1 pseudo_consens +26447 chr16 HAVANA gene 21532945 21550373 576.0 - 0 ENSG00000257639.1 unprocessed_pseudogene AC005632.1 2 OTTHUMG00000170415.1 +26448 chr16 ENSEMBL gene 21587627 21587864 238.0 + 0 ENSG00000252798.1 scaRNA RF00478 3 +26449 chr16 HAVANA gene 21626742 21627569 828.0 + 0 ENSG00000261596.2 sense_intronic AC005632.2 2 OTTHUMG00000175456.2 overlapping_locus +26450 chr16 ENSEMBL gene 21642054 21642160 107.0 + 0 ENSG00000207248.1 snRNA RNU6-1005P 3 +26451 chr16 ENSEMBL gene 21642294 21642400 107.0 + 0 ENSG00000207042.1 snRNA RNU6-196P 3 +26452 chr16 HAVANA gene 21639537 21652660 3532.0 - 0 ENSG00000140749.8 protein_coding IGSF6 1 OTTHUMG00000090709.3 +26453 chr16 HAVANA gene 21597218 21657473 7035.0 + 0 ENSG00000197006.13 protein_coding METTL9 1 OTTHUMG00000131584.3 ncRNA_host,overlapping_locus +26454 chr16 HAVANA gene 21663971 21761935 7538.0 + 0 ENSG00000155719.17 protein_coding OTOA 2 OTTHUMG00000090721.4 +26455 chr16 HAVANA gene 21794095 21795759 1665.0 - 0 ENSG00000260306.1 lincRNA AC092375.2 2 OTTHUMG00000175457.1 +26456 chr16 HAVANA gene 21796106 21820410 5253.0 - 0 ENSG00000248124.7 transcribed_unprocessed_pseudogene RRN3P1 2 OTTHUMG00000170417.2 +26457 chr16 HAVANA gene 21833516 21833621 106.0 + 0 ENSG00000276721.1 unprocessed_pseudogene AC092375.3 2 OTTHUMG00000187894.1 +26458 chr16 HAVANA gene 21834569 21880827 7773.0 - 0 ENSG00000185864.16 protein_coding NPIPB4 2 OTTHUMG00000163555.7 overlapping_locus +26459 chr16 HAVANA gene 21879338 21919156 6290.0 - 0 ENSG00000185710.9 transcribed_unprocessed_pseudogene SMG1P4 2 OTTHUMG00000164330.2 overlapping_locus +26460 chr16 HAVANA gene 21938865 21944987 666.0 + 0 ENSG00000257408.2 transcribed_unprocessed_pseudogene AC092375.1 2 OTTHUMG00000170418.2 +26461 chr16 HAVANA gene 21950218 21951708 1491.0 - 0 ENSG00000274460.1 lincRNA AC092119.2 2 OTTHUMG00000186800.1 +26462 chr16 HAVANA gene 21952660 21983660 5217.0 + 0 ENSG00000140740.10 protein_coding UQCRC2 1 OTTHUMG00000131585.3 +26463 chr16 HAVANA gene 21998310 21999656 934.0 + 0 ENSG00000260395.1 processed_pseudogene AC092119.1 1 OTTHUMG00000175458.1 pseudo_consens +26464 chr16 HAVANA gene 21983865 22001110 1331.0 - 0 ENSG00000155714.13 protein_coding PDZD9 2 OTTHUMG00000131586.3 +26465 chr16 HAVANA gene 22007480 22008062 583.0 - 0 ENSG00000275445.1 antisense AC092119.3 2 OTTHUMG00000186802.1 +26466 chr16 HAVANA gene 22007638 22087534 6122.0 + 0 ENSG00000185716.11 protein_coding MOSMO 2 OTTHUMG00000131587.3 +26467 chr16 HAVANA gene 22083256 22092231 1154.0 - 0 ENSG00000260277.1 antisense AC009019.1 2 OTTHUMG00000175460.1 +26468 chr16 HAVANA gene 22092538 22156966 5039.0 + 0 ENSG00000175267.14 protein_coding VWA3A 2 OTTHUMG00000175461.2 +26469 chr16 HAVANA gene 22165583 22191754 2630.0 + 0 ENSG00000183921.7 protein_coding SDR42E2 1 OTTHUMG00000183976.2 +26470 chr16 HAVANA gene 22206282 22288732 8020.0 + 0 ENSG00000103319.11 protein_coding EEF2K 2 OTTHUMG00000094771.3 +26471 chr16 HAVANA gene 22286708 22288738 714.0 - 0 ENSG00000261113.1 antisense AC009034.1 2 OTTHUMG00000175462.1 +26472 chr16 HAVANA gene 22297375 22335103 9488.0 + 0 ENSG00000058600.15 protein_coding POLR3E 2 OTTHUMG00000094779.3 +26473 chr16 HAVANA gene 22365121 22369047 423.0 + 0 ENSG00000260635.1 antisense AC092338.1 2 OTTHUMG00000175464.1 +26474 chr16 HAVANA gene 22374859 22378180 1455.0 + 0 ENSG00000260790.1 antisense AC092338.2 2 OTTHUMG00000175465.1 +26475 chr16 HAVANA gene 22382436 22407428 1290.0 + 0 ENSG00000230872.1 unitary_pseudogene MFSD13B 2 OTTHUMG00000154703.1 +26476 chr16 HAVANA gene 22345936 22437165 3948.0 - 0 ENSG00000140743.7 protein_coding CDR2 2 OTTHUMG00000175463.2 overlapping_locus +26477 chr16 HAVANA gene 22418672 22437715 3366.0 - 0 ENSG00000257122.5 transcribed_unprocessed_pseudogene RRN3P3 2 OTTHUMG00000170419.2 overlapping_locus +26478 chr16 HAVANA gene 22437008 22492220 7046.0 + 0 ENSG00000237296.9 transcribed_unprocessed_pseudogene SMG1P1 2 OTTHUMG00000156797.2 overlapping_locus +26479 chr16 HAVANA gene 22479121 22536521 10005.0 + 0 ENSG00000243716.10 protein_coding NPIPB5 2 OTTHUMG00000163573.6 overlapping_locus +26480 chr16 HAVANA gene 22537478 22537584 107.0 - 0 ENSG00000277041.1 unprocessed_pseudogene AC106788.1 2 OTTHUMG00000187895.1 +26481 chr16 HAVANA gene 22545698 22576865 2661.0 + 0 ENSG00000257838.5 transcribed_unprocessed_pseudogene OTOAP1 2 OTTHUMG00000170420.1 +26482 chr16 HAVANA gene 22610531 22612196 1666.0 - 0 ENSG00000260973.1 lincRNA AC009021.2 2 OTTHUMG00000176839.1 +26483 chr16 HAVANA gene 22612543 22613483 375.0 - 0 ENSG00000260905.1 lincRNA AC009021.1 2 OTTHUMG00000176840.1 +26484 chr16 HAVANA gene 22806289 22813680 5701.0 - 0 ENSG00000283213.1 lincRNA AC130466.1 2 OTTHUMG00000191620.1 +26485 chr16 HAVANA gene 22814177 22916338 2605.0 + 0 ENSG00000122254.6 protein_coding HS3ST2 2 OTTHUMG00000094785.2 +26486 chr16 HAVANA gene 23020337 23023611 932.0 + 0 ENSG00000261090.1 lincRNA AC127459.2 2 OTTHUMG00000177262.1 +26487 chr16 HAVANA gene 23061767 23062232 466.0 + 0 ENSG00000280400.1 TEC AC127459.3 2 OTTHUMG00000176841.1 +26488 chr16 HAVANA gene 23061406 23064173 2768.0 - 0 ENSG00000260566.2 3prime_overlapping_ncRNA AC127459.1 2 OTTHUMG00000177263.2 overlapping_locus +26489 chr16 HAVANA gene 23061406 23149270 12017.0 - 0 ENSG00000103404.14 protein_coding USP31 1 OTTHUMG00000094793.6 overlapping_locus +26490 chr16 HAVANA gene 23167577 23186395 1702.0 - 0 ENSG00000285613.1 lincRNA AC099482.2 2 OTTHUMG00000192729.1 +26491 chr16 HAVANA gene 23194878 23213104 481.0 - 0 ENSG00000260741.1 antisense AC099482.1 2 OTTHUMG00000177037.1 +26492 chr16 HAVANA gene 23182715 23216883 3507.0 + 0 ENSG00000166828.2 protein_coding SCNN1G 2 OTTHUMG00000131609.1 +26493 chr16 HAVANA gene 23278231 23381299 3918.0 + 0 ENSG00000168447.10 protein_coding SCNN1B 1 OTTHUMG00000131608.7 +26494 chr16 HAVANA gene 23412380 23416680 4301.0 + 0 ENSG00000280039.1 TEC RN7SKP23 2 OTTHUMG00000177015.2 +26495 chr16 ENSEMBL gene 23441841 23441921 81.0 + 0 ENSG00000212593.1 snoRNA RF00072 3 +26496 chr16 HAVANA gene 23446446 23447282 837.0 - 0 ENSG00000259782.2 sense_intronic AC008915.1 2 OTTHUMG00000177013.2 overlapping_locus +26497 chr16 HAVANA gene 23388493 23453180 4343.0 - 0 ENSG00000168434.12 protein_coding COG7 2 OTTHUMG00000094807.3 overlapping_locus +26498 chr16 HAVANA gene 23452758 23457606 1007.0 + 0 ENSG00000260136.5 lincRNA AC008915.2 2 OTTHUMG00000177094.1 +26499 chr16 HAVANA gene 23500905 23501630 726.0 + 0 ENSG00000261528.2 processed_pseudogene AC002400.1 1 OTTHUMG00000177017.2 pseudo_consens +26500 chr16 HAVANA gene 23463542 23521995 8231.0 - 0 ENSG00000103365.15 protein_coding GGA2 1 OTTHUMG00000096957.5 +26501 chr16 HAVANA gene 23537061 23537556 339.0 + 0 ENSG00000260247.1 processed_pseudogene SUB1P4 1 OTTHUMG00000177019.1 pseudo_consens +26502 chr16 HAVANA gene 23522014 23557731 5730.0 - 0 ENSG00000103356.15 protein_coding EARS2 1 OTTHUMG00000177018.3 +26503 chr16 HAVANA gene 23568673 23569696 1024.0 + 0 ENSG00000260751.2 sense_intronic AC008870.2 2 OTTHUMG00000177095.2 overlapping_locus +26504 chr16 HAVANA gene 23557362 23574389 8619.0 + 0 ENSG00000103353.15 protein_coding UBFD1 1 OTTHUMG00000128855.5 overlapping_locus +26505 chr16 HAVANA gene 23581002 23596356 1600.0 - 0 ENSG00000004779.9 protein_coding NDUFAB1 1 OTTHUMG00000096985.5 +26506 chr16 HAVANA gene 23605841 23624107 627.0 + 0 ENSG00000261723.1 antisense AC008870.4 2 OTTHUMG00000177098.1 +26507 chr16 HAVANA gene 23603160 23641310 4747.0 - 0 ENSG00000083093.9 protein_coding PALB2 1 OTTHUMG00000177097.6 +26508 chr16 HAVANA gene 23670011 23675499 3315.0 + 0 ENSG00000260482.3 3prime_overlapping_ncRNA AC008870.1 2 OTTHUMG00000189504.1 overlapping_locus +26509 chr16 HAVANA gene 23641392 23677455 12740.0 + 0 ENSG00000166847.9 protein_coding DCTN5 1 OTTHUMG00000131610.6 overlapping_locus +26510 chr16 HAVANA gene 23687049 23687689 641.0 - 0 ENSG00000261266.2 antisense AC008870.3 2 OTTHUMG00000177100.2 +26511 chr16 HAVANA gene 23677656 23690367 4760.0 + 0 ENSG00000166851.14 protein_coding PLK1 2 OTTHUMG00000096984.5 +26512 chr16 HAVANA gene 23696665 23697314 650.0 - 0 ENSG00000278912.1 TEC AC008870.5 2 OTTHUMG00000177101.1 overlapping_locus +26513 chr16 HAVANA gene 23711990 23712793 534.0 + 0 ENSG00000261583.1 antisense AC012317.1 2 OTTHUMG00000177021.1 +26514 chr16 HAVANA gene 23690326 23713500 4998.0 - 0 ENSG00000134398.14 protein_coding ERN2 1 OTTHUMG00000177020.5 overlapping_locus +26515 chr16 HAVANA gene 23753689 23755939 2251.0 - 0 ENSG00000279756.1 TEC AC012317.2 2 OTTHUMG00000177102.1 +26516 chr16 HAVANA gene 23754627 23758951 2382.0 + 0 ENSG00000166869.2 protein_coding CHP2 2 OTTHUMG00000131611.1 +26517 chr16 HAVANA gene 23962951 23963351 401.0 + 0 ENSG00000279276.1 TEC AC130454.1 2 OTTHUMG00000177440.1 overlapping_locus +26518 chr16 HAVANA gene 24098239 24099971 1733.0 + 0 ENSG00000279202.1 TEC AC130448.1 2 OTTHUMG00000177268.1 overlapping_locus +26519 chr16 ENSEMBL gene 24203116 24203231 116.0 + 0 ENSG00000274466.1 miRNA MIR1273H 3 +26520 chr16 HAVANA gene 24208105 24208478 374.0 + 0 ENSG00000279554.1 TEC AC130448.2 2 OTTHUMG00000177269.1 overlapping_locus +26521 chr16 HAVANA gene 23835946 24220611 11086.0 + 0 ENSG00000166501.13 protein_coding PRKCB 1 OTTHUMG00000131615.9 ncRNA_host,overlapping_locus +26522 chr16 HAVANA gene 24236104 24252863 960.0 + 0 ENSG00000260264.1 lincRNA LINC2194 2 OTTHUMG00000177234.1 +26523 chr16 ENSEMBL gene 24333415 24333547 133.0 - 0 ENSG00000201541.1 snoRNA RF00408 3 +26524 chr16 HAVANA gene 24255553 24362801 3088.0 + 0 ENSG00000006116.3 protein_coding CACNG3 2 OTTHUMG00000131651.1 +26525 chr16 ENSEMBL gene 24400056 24400117 62.0 - 0 ENSG00000239081.1 snRNA RNU7-24P 3 +26526 chr16 HAVANA gene 24472798 24495177 6510.0 - 0 ENSG00000260072.1 lincRNA AC008938.1 2 OTTHUMG00000177235.1 +26527 chr16 HAVANA gene 24537693 24572863 10217.0 + 0 ENSG00000122257.19 protein_coding RBBP6 2 OTTHUMG00000096991.10 +26528 chr16 HAVANA gene 24661422 24671062 2907.0 - 0 ENSG00000224310.1 lincRNA LINC01567 2 OTTHUMG00000131650.3 +26529 chr16 HAVANA gene 24803451 24819739 579.0 - 0 ENSG00000261669.1 antisense AC008731.1 2 OTTHUMG00000177118.1 +26530 chr16 HAVANA gene 24610209 24827632 12924.0 + 0 ENSG00000090905.18 protein_coding TNRC6A 1 OTTHUMG00000096999.11 +26531 chr16 HAVANA gene 24845841 24911628 3415.0 + 0 ENSG00000158865.12 protein_coding SLC5A11 2 OTTHUMG00000097003.8 +26532 chr16 HAVANA gene 24919385 25015666 9879.0 - 0 ENSG00000140750.16 protein_coding ARHGAP17 2 OTTHUMG00000177372.10 +26533 chr16 HAVANA gene 25015978 25021023 4007.0 + 0 ENSG00000260714.1 processed_pseudogene AC133552.1 1 OTTHUMG00000177119.1 pseudo_consens +26534 chr16 HAVANA gene 25031744 25058109 1126.0 + 0 ENSG00000262587.2 transcribed_unprocessed_pseudogene AC133552.2 2 OTTHUMG00000177403.2 +26535 chr16 HAVANA gene 25066937 25068943 1875.0 + 0 ENSG00000262155.1 lincRNA LINC02175 2 OTTHUMG00000177404.1 +26536 chr16 HAVANA gene 25069570 25070109 540.0 + 0 ENSG00000271105.1 processed_pseudogene SCML2P2 1 OTTHUMG00000184811.1 pseudo_consens +26537 chr16 HAVANA gene 25071490 25072727 676.0 - 0 ENSG00000263326.1 unprocessed_pseudogene AC133552.4 1 OTTHUMG00000177407.1 pseudo_consens +26538 chr16 HAVANA gene 25093387 25095255 1869.0 + 0 ENSG00000262700.1 processed_pseudogene AC133552.3 2 OTTHUMG00000177405.1 +26539 chr16 HAVANA gene 25106569 25107102 534.0 - 0 ENSG00000275494.1 sense_intronic AC133552.5 2 OTTHUMG00000186826.1 overlapping_locus +26540 chr16 HAVANA gene 25085592 25111555 1168.0 - 0 ENSG00000260448.5 bidirectional_promoter_lncRNA LCMT1-AS1 2 OTTHUMG00000177185.1 overlapping_locus +26541 chr16 HAVANA gene 25140577 25149032 7990.0 - 0 ENSG00000260034.1 antisense LCMT1-AS2 2 OTTHUMG00000177183.1 +26542 chr16 HAVANA gene 25111729 25178231 2606.0 + 0 ENSG00000205629.11 protein_coding LCMT1 1 OTTHUMG00000177182.5 +26543 chr16 ENSEMBL gene 25185253 25185538 286.0 - 0 ENSG00000266166.2 misc_RNA RN7SL557P 3 +26544 chr16 HAVANA gene 25215731 25228940 1421.0 + 0 ENSG00000103375.10 protein_coding AQP8 2 OTTHUMG00000097013.2 +26545 chr16 HAVANA gene 25238318 25239287 510.0 + 0 ENSG00000259955.1 antisense AC008741.1 2 OTTHUMG00000177181.1 +26546 chr16 HAVANA gene 25236001 25257931 7970.0 - 0 ENSG00000155592.15 protein_coding ZKSCAN2 2 OTTHUMG00000177180.1 +26547 chr16 HAVANA gene 25257952 25261066 3115.0 + 0 ENSG00000274925.1 lincRNA ZKSCAN2-DT 2 OTTHUMG00000186827.1 +26548 chr16 HAVANA gene 25419814 25424169 518.0 - 0 ENSG00000261636.1 lincRNA LINC02191 2 OTTHUMG00000177070.1 +26549 chr16 HAVANA gene 25454339 25454647 309.0 - 0 ENSG00000260690.1 processed_pseudogene CYCSP39 1 OTTHUMG00000177071.1 pseudo_consens +26550 chr16 HAVANA gene 25824710 25826330 1094.0 - 0 ENSG00000260255.1 processed_pseudogene AC093524.1 1 OTTHUMG00000177072.1 pseudo_consens +26551 chr16 ENSEMBL gene 26025237 26025310 74.0 + 0 ENSG00000265005.1 miRNA MIR548W 3 +26552 chr16 ENSEMBL gene 26028912 26029025 114.0 + 0 ENSG00000199929.1 rRNA_pseudogene RNA5SP405 3 +26553 chr16 HAVANA gene 26032539 26032811 273.0 - 0 ENSG00000230330.1 processed_pseudogene HMGN2P3 1 OTTHUMG00000059918.1 pseudo_consens +26554 chr16 HAVANA gene 25787987 26042347 1360.0 + 0 ENSG00000285882.1 sense_intronic AC093516.1 2 OTTHUMG00000193195.1 ncRNA_host +26555 chr16 HAVANA gene 26062750 26063097 348.0 - 0 ENSG00000237140.2 processed_pseudogene HSPE1P16 1 OTTHUMG00000059950.2 pseudo_consens +26556 chr16 HAVANA gene 25692026 26137688 3379.0 + 0 ENSG00000182601.6 protein_coding HS3ST4 2 OTTHUMG00000059978.3 ncRNA_host +26557 chr16 HAVANA gene 26302064 26334428 1715.0 + 0 ENSG00000231876.7 lincRNA AC009158.1 2 OTTHUMG00000060108.6 +26558 chr16 HAVANA gene 26354796 26358355 1500.0 - 0 ENSG00000228480.1 unprocessed_pseudogene AC130464.1 1 OTTHUMG00000102175.1 pseudo_consens +26559 chr16 HAVANA gene 26584755 26594813 294.0 - 0 ENSG00000236481.1 lincRNA LINC02195 2 OTTHUMG00000060136.1 +26560 chr16 HAVANA gene 26721874 26729126 717.0 + 0 ENSG00000260580.1 lincRNA AC009035.1 2 OTTHUMG00000177033.1 +26561 chr16 HAVANA gene 27066928 27067858 499.0 - 0 ENSG00000261482.1 antisense AC092725.1 2 OTTHUMG00000177034.1 +26562 chr16 HAVANA gene 27066707 27069165 2459.0 + 0 ENSG00000234186.2 lincRNA C16orf82 2 OTTHUMG00000161986.2 +26563 chr16 HAVANA gene 27133483 27135179 1389.0 - 0 ENSG00000261557.1 processed_pseudogene EEF1A1P38 1 OTTHUMG00000177035.1 pseudo_consens +26564 chr16 HAVANA gene 27158451 27176587 692.0 - 0 ENSG00000261045.2 lincRNA LINC02129 2 OTTHUMG00000177036.2 +26565 chr16 HAVANA gene 27213308 27214993 1686.0 - 0 ENSG00000259940.2 antisense AC109449.1 2 OTTHUMG00000177038.2 +26566 chr16 HAVANA gene 27203495 27221768 4039.0 + 0 ENSG00000155666.11 protein_coding KDM8 1 OTTHUMG00000131677.7 +26567 chr16 HAVANA gene 27224991 27268794 3770.0 - 0 ENSG00000169189.16 protein_coding NSMCE1 1 OTTHUMG00000131674.7 +26568 chr16 HAVANA gene 27268205 27290492 3266.0 + 0 ENSG00000245888.6 antisense FLJ21408 1 OTTHUMG00000177039.1 +26569 chr16 HAVANA gene 27313387 27314101 715.0 - 0 ENSG00000274092.1 antisense AC106739.1 2 OTTHUMG00000186828.1 +26570 chr16 HAVANA gene 27313668 27364778 5894.0 + 0 ENSG00000077238.13 protein_coding IL4R 1 OTTHUMG00000097015.11 +26571 chr16 HAVANA gene 27402162 27452042 5467.0 + 0 ENSG00000103522.15 protein_coding IL21R 2 OTTHUMG00000131675.5 +26572 chr16 HAVANA gene 27447669 27453393 2615.0 - 0 ENSG00000259954.1 antisense IL21R-AS1 2 OTTHUMG00000176806.1 +26573 chr16 HAVANA gene 27459555 27549913 11562.0 - 0 ENSG00000077235.17 protein_coding GTF3C1 1 OTTHUMG00000176805.8 +26574 chr16 HAVANA gene 27643199 27644663 592.0 + 0 ENSG00000261736.1 sense_intronic AC002551.1 2 OTTHUMG00000176781.1 overlapping_locus +26575 chr16 HAVANA gene 27687182 27687522 341.0 + 0 ENSG00000273553.1 sense_intronic AC016597.2 2 OTTHUMG00000186830.1 overlapping_locus +26576 chr16 HAVANA gene 27678940 27718806 1456.0 - 0 ENSG00000261329.5 antisense AC016597.1 2 OTTHUMG00000176807.2 +26577 chr16 ENSEMBL gene 27722284 27722392 109.0 - 0 ENSG00000201371.1 misc_RNA RF00019 3 +26578 chr16 HAVANA gene 27550133 27780369 9784.0 + 0 ENSG00000047578.12 protein_coding KIAA0556 2 OTTHUMG00000176780.6 overlapping_locus +26579 chr16 ENSEMBL gene 27863251 27863356 106.0 + 0 ENSG00000212382.1 snRNA RNU6-159P 3 +26580 chr16 ENSEMBL gene 27998295 27998401 107.0 - 0 ENSG00000207266.1 snRNA RNU6-1241P 3 +26581 chr16 HAVANA gene 27787535 28063509 5213.0 - 0 ENSG00000169181.12 protein_coding GSG1L 2 OTTHUMG00000131676.5 ncRNA_host +26582 chr16 HAVANA gene 28111173 28111647 475.0 - 0 ENSG00000260452.1 processed_pseudogene TPRKBP2 1 OTTHUMG00000176815.1 pseudo_consens,overlapping_locus +26583 chr16 ENSEMBL gene 28179098 28179223 126.0 + 0 ENSG00000200652.1 snoRNA RF00402 3 +26584 chr16 ENSEMBL gene 28183318 28183430 113.0 + 0 ENSG00000200138.1 misc_RNA RNY1P10 3 +26585 chr16 HAVANA gene 28097979 28211920 7065.0 - 0 ENSG00000169180.11 protein_coding XPO6 1 OTTHUMG00000176782.9 overlapping_locus +26586 chr16 HAVANA gene 28239693 28240668 976.0 - 0 ENSG00000250982.2 processed_pseudogene GAPDHP35 1 OTTHUMG00000160047.2 pseudo_consens +26587 chr16 HAVANA gene 28284885 28292064 2481.0 - 0 ENSG00000246465.1 lincRNA AC138904.1 1 OTTHUMG00000166065.1 +26588 chr16 HAVANA gene 28258686 28292173 2681.0 + 0 ENSG00000283662.1 lincRNA AC138904.3 2 OTTHUMG00000191760.1 +26589 chr16 HAVANA gene 28292519 28323849 4992.0 + 0 ENSG00000188322.4 protein_coding SBK1 1 OTTHUMG00000166066.2 +26590 chr16 HAVANA gene 28341437 28341543 107.0 + 0 ENSG00000277191.1 unprocessed_pseudogene AC138904.2 2 OTTHUMG00000187896.1 +26591 chr16 HAVANA gene 28342555 28363508 2135.0 - 0 ENSG00000198156.10 protein_coding NPIPB6 2 OTTHUMG00000166319.2 +26592 chr16 HAVANA gene 28364700 28365333 634.0 + 0 ENSG00000271623.1 processed_pseudogene AC138894.3 2 OTTHUMG00000184808.1 +26593 chr16 ENSEMBL gene 28390982 28391051 70.0 - 0 ENSG00000275429.1 miRNA MIR6862-1 3 +26594 chr16 HAVANA gene 28379579 28403879 3091.0 - 0 ENSG00000205609.12 protein_coding EIF3CL 2 OTTHUMG00000097025.1 ncRNA_host +26595 chr16 HAVANA gene 28413703 28415018 1029.0 + 0 ENSG00000261089.1 processed_pseudogene CDC37P2 1 OTTHUMG00000175736.1 pseudo_consens +26596 chr16 HAVANA gene 28454141 28454511 371.0 - 0 ENSG00000270118.1 lincRNA AC138894.2 2 OTTHUMG00000184080.1 +26597 chr16 HAVANA gene 28451644 28455356 256.0 + 0 ENSG00000275654.1 unprocessed_pseudogene AC138894.4 2 OTTHUMG00000187897.1 +26598 chr16 HAVANA gene 28456372 28471175 1493.0 - 0 ENSG00000233232.6 protein_coding NPIPB7 2 OTTHUMG00000156915.3 overlapping_locus +26599 chr16 HAVANA gene 28456371 28492098 4192.0 - 0 ENSG00000261832.6 protein_coding AC138894.1 2 OTTHUMG00000175737.3 overlapping_locus +26600 chr16 HAVANA gene 28474111 28495575 9858.0 - 0 ENSG00000188603.19 protein_coding CLN3 2 OTTHUMG00000097024.10 overlapping_locus +26601 chr16 HAVANA gene 28494649 28498970 3792.0 + 0 ENSG00000184730.10 protein_coding APOBR 2 OTTHUMG00000172705.1 +26602 chr16 HAVANA gene 28499362 28512051 1270.0 - 0 ENSG00000197272.2 protein_coding IL27 1 OTTHUMG00000097023.4 +26603 chr16 HAVANA gene 28532708 28539174 5674.0 - 0 ENSG00000176046.8 protein_coding NUPR1 1 OTTHUMG00000131764.3 +26604 chr16 HAVANA gene 28548331 28548658 328.0 - 0 ENSG00000271495.1 processed_pseudogene AC020765.1 1 OTTHUMG00000184822.1 pseudo_consens +26605 chr16 HAVANA gene 28553709 28554140 432.0 - 0 ENSG00000275441.1 antisense AC020765.2 2 OTTHUMG00000186839.1 +26606 chr16 HAVANA gene 28553915 28591790 2124.0 + 0 ENSG00000176476.8 protein_coding SGF29 2 OTTHUMG00000131763.2 +26607 chr16 HAVANA gene 28591943 28597109 2275.0 - 0 ENSG00000197165.10 protein_coding SULT1A2 1 OTTHUMG00000048082.4 +26608 chr16 HAVANA gene 28599241 28601881 740.0 - 0 ENSG00000278665.1 unprocessed_pseudogene AC020765.3 2 OTTHUMG00000187898.1 +26609 chr16 HAVANA gene 28602340 28604519 400.0 + 0 ENSG00000278725.1 unprocessed_pseudogene AC020765.4 2 OTTHUMG00000187959.1 +26610 chr16 HAVANA gene 28612131 28614884 633.0 - 0 ENSG00000285020.1 unprocessed_pseudogene AC020765.5 2 OTTHUMG00000192377.1 +26611 chr16 HAVANA gene 28605196 28623625 8909.0 - 0 ENSG00000196502.11 protein_coding SULT1A1 2 OTTHUMG00000131765.4 +26612 chr16 HAVANA gene 28637654 28658682 2338.0 + 0 ENSG00000255524.7 protein_coding NPIPB8 1 OTTHUMG00000166386.3 +26613 chr16 HAVANA gene 28700294 28701540 959.0 - 0 ENSG00000259982.1 processed_pseudogene CDC37P1 1 OTTHUMG00000175739.1 pseudo_consens,overlapping_locus +26614 chr16 ENSEMBL gene 28724252 28724321 70.0 + 0 ENSG00000278340.1 miRNA MIR6862-2 3 +26615 chr16 HAVANA gene 28688558 28735730 6982.0 + 0 ENSG00000184110.14 protein_coding EIF3C 2 OTTHUMG00000099443.4 ncRNA_host +26616 chr16 HAVANA gene 28659696 28740781 361.0 - 0 ENSG00000261419.1 unprocessed_pseudogene AC145285.4 1 OTTHUMG00000175738.1 pseudo_consens,overlapping_locus +26617 chr16 HAVANA gene 28749959 28750595 637.0 - 0 ENSG00000270424.1 processed_pseudogene AC145285.5 2 OTTHUMG00000184820.1 +26618 chr16 HAVANA gene 28751787 28772807 2123.0 + 0 ENSG00000196993.8 protein_coding NPIPB9 2 OTTHUMG00000170452.2 +26619 chr16 HAVANA gene 28773824 28777534 255.0 - 0 ENSG00000278528.1 unprocessed_pseudogene AC145285.7 2 OTTHUMG00000187961.1 +26620 chr16 HAVANA gene 28813980 28814673 694.0 - 0 ENSG00000240634.1 processed_pseudogene AC145285.1 1 OTTHUMG00000158118.1 pseudo_consens +26621 chr16 HAVANA gene 28802743 28817828 1963.0 + 0 ENSG00000251417.2 lincRNA AC145285.2 2 OTTHUMG00000175740.2 +26622 chr16 HAVANA gene 28820570 28822033 540.0 - 0 ENSG00000260796.1 antisense AC145285.3 2 OTTHUMG00000176433.1 +26623 chr16 HAVANA gene 28822431 28823969 1539.0 - 0 ENSG00000275807.1 antisense AC145285.6 2 OTTHUMG00000188139.1 +26624 chr16 HAVANA gene 28830612 28837200 295.0 - 0 ENSG00000260570.1 antisense AC133550.1 2 OTTHUMG00000176589.1 +26625 chr16 HAVANA gene 28823035 28837237 6508.0 + 0 ENSG00000168488.18 protein_coding ATXN2L 1 OTTHUMG00000097038.6 +26626 chr16 ENSEMBL gene 28843919 28844007 89.0 - 0 ENSG00000283845.1 miRNA MIR4721 3 +26627 chr16 HAVANA gene 28842411 28846408 2271.0 - 0 ENSG00000178952.10 protein_coding TUFM 2 OTTHUMG00000097039.3 ncRNA_host +26628 chr16 HAVANA gene 28862166 28863340 544.0 - 0 ENSG00000261766.1 antisense AC133550.2 2 OTTHUMG00000176591.1 +26629 chr16 HAVANA gene 28846600 28874212 7145.0 + 0 ENSG00000178188.14 protein_coding SH2B1 1 OTTHUMG00000176590.3 +26630 chr16 HAVANA gene 28878957 28879920 583.0 - 0 ENSG00000260442.5 antisense ATP2A1-AS1 2 OTTHUMG00000176592.1 +26631 chr16 ENSEMBL gene 28881480 28881607 128.0 - 0 ENSG00000252461.1 snoRNA RF00416 3 +26632 chr16 HAVANA gene 28878405 28904509 4587.0 + 0 ENSG00000196296.13 protein_coding ATP2A1 2 OTTHUMG00000131760.4 +26633 chr16 HAVANA gene 28904421 28936526 4566.0 - 0 ENSG00000177548.12 protein_coding RABEP2 1 OTTHUMG00000176593.2 +26634 chr16 HAVANA gene 28931939 28939346 2711.0 + 0 ENSG00000177455.12 protein_coding CD19 2 OTTHUMG00000097049.4 +26635 chr16 ENSEMBL gene 28958583 28958661 79.0 + 0 ENSG00000284541.1 miRNA MIR4517 3 +26636 chr16 HAVANA gene 28956687 28966883 1092.0 - 0 ENSG00000260853.1 antisense AC109460.2 2 OTTHUMG00000176594.2 +26637 chr16 HAVANA gene 28950807 28967097 5738.0 + 0 ENSG00000176953.12 protein_coding NFATC2IP 2 OTTHUMG00000097763.3 ncRNA_host +26638 chr16 HAVANA gene 28973962 28978824 1478.0 - 0 ENSG00000260367.2 antisense AC109460.1 2 OTTHUMG00000176708.2 +26639 chr16 HAVANA gene 28974221 28984548 3792.0 + 0 ENSG00000169682.17 protein_coding SPNS1 1 OTTHUMG00000131762.3 overlapping_locus +26640 chr16 HAVANA gene 28974804 28990775 5296.0 + 0 ENSG00000261067.7 processed_transcript AC109460.3 2 OTTHUMG00000176707.1 overlapping_locus +26641 chr16 HAVANA gene 28989140 28990778 454.0 - 0 ENSG00000261552.1 antisense AC109460.4 2 OTTHUMG00000176709.1 +26642 chr16 HAVANA gene 28984826 28990783 4430.0 + 0 ENSG00000213658.11 protein_coding LAT 1 OTTHUMG00000131761.4 overlapping_locus +26643 chr16 HAVANA gene 29038655 29052726 1354.0 + 0 ENSG00000196796.5 unprocessed_pseudogene NPIPB10P 2 OTTHUMG00000170453.2 +26644 chr16 HAVANA gene 29075022 29104162 1611.0 + 0 ENSG00000284671.1 transcribed_unprocessed_pseudogene AC009093.9 1 OTTHUMG00000192307.1 pseudo_consens,overlapping_locus +26645 chr16 HAVANA gene 29053732 29108108 2180.0 - 0 ENSG00000260908.1 transcribed_unprocessed_pseudogene AC009093.3 2 OTTHUMG00000176710.1 +26646 chr16 HAVANA gene 29074976 29116718 2271.0 + 0 ENSG00000103472.10 processed_transcript RRN3P2 2 OTTHUMG00000176711.1 overlapping_locus +26647 chr16 HAVANA gene 29204633 29205855 1223.0 + 0 ENSG00000279106.1 TEC AC009093.7 2 OTTHUMG00000176107.1 overlapping_locus +26648 chr16 HAVANA gene 29139661 29216706 2488.0 + 0 ENSG00000260517.3 lincRNA AC009093.2 2 OTTHUMG00000192309.1 overlapping_locus +26649 chr16 HAVANA gene 29113050 29217860 769.0 + 0 ENSG00000284649.1 transcribed_unprocessed_pseudogene AC009093.8 2 OTTHUMG00000192308.1 overlapping_locus +26650 chr16 HAVANA gene 29217170 29220031 2099.0 - 0 ENSG00000259807.1 lincRNA AC009093.1 2 OTTHUMG00000176712.1 +26651 chr16 HAVANA gene 29225594 29226348 359.0 - 0 ENSG00000273582.1 lincRNA AC009093.5 2 OTTHUMG00000186852.1 +26652 chr16 HAVANA gene 29262273 29264479 561.0 - 0 ENSG00000260953.1 lincRNA AC009093.4 2 OTTHUMG00000176713.1 +26653 chr16 HAVANA gene 29272220 29272772 553.0 + 0 ENSG00000277999.1 lincRNA AC009093.6 2 OTTHUMG00000186853.1 +26654 chr16 HAVANA gene 29312350 29331277 653.0 + 0 ENSG00000260413.1 transcribed_unprocessed_pseudogene AC025279.1 2 OTTHUMG00000176714.1 overlapping_locus +26655 chr16 HAVANA gene 29139379 29331304 1442.0 + 0 ENSG00000284685.1 processed_transcript AC009093.10 2 OTTHUMG00000171428.2 overlapping_locus +26656 chr16 HAVANA gene 29350746 29370272 2113.0 + 0 ENSG00000271699.5 transcribed_unprocessed_pseudogene SNX29P2 2 OTTHUMG00000184229.1 overlapping_locus +26657 chr16 HAVANA gene 29291220 29372110 4818.0 + 0 ENSG00000198106.8 processed_transcript SNX29P2 2 OTTHUMG00000192310.1 overlapping_locus +26658 chr16 HAVANA gene 29380242 29380345 104.0 + 0 ENSG00000278078.1 unprocessed_pseudogene AC025279.2 2 OTTHUMG00000187963.1 +26659 chr16 HAVANA gene 29381354 29404029 4398.0 - 0 ENSG00000254206.5 protein_coding NPIPB11 2 OTTHUMG00000170467.1 +26660 chr16 HAVANA gene 29425800 29447026 2930.0 - 0 ENSG00000254634.4 unprocessed_pseudogene SMG1P6 2 OTTHUMG00000166914.1 overlapping_locus +26661 chr16 HAVANA gene 29449191 29449625 152.0 + 0 ENSG00000260335.1 unprocessed_pseudogene AC133555.4 2 OTTHUMG00000176756.1 +26662 chr16 HAVANA gene 29443230 29454651 3417.0 - 0 ENSG00000261740.6 protein_coding BOLA2-SMG1P6 2 OTTHUMG00000176715.2 overlapping_locus +26663 chr16 HAVANA gene 29443056 29454964 1884.0 - 0 ENSG00000183336.8 protein_coding BOLA2 2 OTTHUMG00000176757.2 overlapping_locus +26664 chr16 HAVANA gene 29454501 29458219 2462.0 + 0 ENSG00000181625.17 protein_coding SLX1B 2 OTTHUMG00000132110.2 overlapping_locus +26665 chr16 HAVANA gene 29455105 29464963 4054.0 + 0 ENSG00000260280.5 processed_transcript SLX1B-SULT1A4 2 OTTHUMG00000176758.2 overlapping_locus +26666 chr16 HAVANA gene 29459889 29464976 1979.0 + 0 ENSG00000213648.10 protein_coding SULT1A4 2 OTTHUMG00000170468.2 overlapping_locus +26667 chr16 HAVANA gene 29466069 29467578 988.0 + 0 ENSG00000279228.2 transcribed_unprocessed_pseudogene AC133555.5 2 OTTHUMG00000170470.3 +26668 chr16 HAVANA gene 29464967 29467833 1819.0 - 0 ENSG00000258150.6 transcribed_unprocessed_pseudogene AC133555.3 2 OTTHUMG00000170469.3 +26669 chr16 HAVANA gene 29475064 29475355 292.0 + 0 ENSG00000257691.2 processed_pseudogene AC133555.2 2 OTTHUMG00000170471.2 +26670 chr16 HAVANA gene 29478879 29482591 259.0 + 0 ENSG00000257506.1 unprocessed_pseudogene AC133555.1 2 OTTHUMG00000170472.1 +26671 chr16 HAVANA gene 29483642 29505999 4331.0 - 0 ENSG00000169203.16 protein_coding NPIPB12 2 OTTHUMG00000163547.2 +26672 chr16 HAVANA gene 29527568 29594966 4221.0 - 0 ENSG00000205534.6 unprocessed_pseudogene SMG1P2 2 OTTHUMG00000176759.1 +26673 chr16 HAVANA gene 29595130 29596137 1008.0 - 0 ENSG00000279583.1 TEC AC009086.3 2 OTTHUMG00000177640.1 +26674 chr16 ENSEMBL gene 29599179 29599265 87.0 - 0 ENSG00000266758.1 miRNA MIR3680-2 3 +26675 chr16 HAVANA gene 29613104 29613640 537.0 - 0 ENSG00000260727.1 unprocessed_pseudogene SLC7A5P1 1 OTTHUMG00000176771.1 pseudo_consens +26676 chr16 HAVANA gene 29624517 29624825 309.0 + 0 ENSG00000260514.1 processed_pseudogene AC009086.1 1 OTTHUMG00000176773.1 pseudo_consens +26677 chr16 HAVANA gene 29618785 29636328 576.0 - 0 ENSG00000260133.1 unprocessed_pseudogene CA5AP1 2 OTTHUMG00000176772.1 +26678 chr16 HAVANA gene 29662979 29670876 7382.0 + 0 ENSG00000197471.11 protein_coding SPN 2 OTTHUMG00000097765.4 overlapping_locus +26679 chr16 HAVANA gene 29663279 29695144 610.0 + 0 ENSG00000277669.1 protein_coding AC009086.2 2 OTTHUMG00000188617.2 +26680 chr16 HAVANA gene 29679008 29698699 3642.0 + 0 ENSG00000103485.17 protein_coding QPRT 1 OTTHUMG00000097770.4 overlapping_locus +26681 chr16 ENSEMBL gene 29731051 29731404 354.0 - 0 ENSG00000222375.1 misc_RNA RN7SKP127 3 +26682 chr16 HAVANA gene 29742463 29746006 2585.0 - 0 ENSG00000185905.3 protein_coding C16orf54 2 OTTHUMG00000132116.1 +26683 chr16 HAVANA gene 29745247 29748299 1656.0 + 0 ENSG00000260719.1 antisense AC009133.3 2 OTTHUMG00000177138.1 +26684 chr16 HAVANA gene 29778240 29782973 3132.0 + 0 ENSG00000174992.7 protein_coding ZG16 2 OTTHUMG00000177139.4 +26685 chr16 HAVANA gene 29804430 29804990 561.0 - 0 ENSG00000275857.1 antisense AC009133.4 2 OTTHUMG00000177646.2 +26686 chr16 HAVANA gene 29790719 29805385 4312.0 + 0 ENSG00000079616.12 protein_coding KIF22 1 OTTHUMG00000097771.5 +26687 chr16 HAVANA gene 29806496 29807732 547.0 - 0 ENSG00000259952.1 antisense AC009133.2 2 OTTHUMG00000177140.1 +26688 chr16 HAVANA gene 29806106 29811164 3504.0 + 0 ENSG00000103495.13 protein_coding MAZ 2 OTTHUMG00000190393.2 overlapping_locus +26689 chr16 HAVANA gene 29808679 29812227 473.0 + 0 ENSG00000280607.1 processed_transcript AC009133.5 2 OTTHUMG00000132119.60 overlapping_locus +26690 chr16 HAVANA gene 29811382 29815892 3755.0 + 0 ENSG00000167371.19 protein_coding PRRT2 2 OTTHUMG00000177142.61 overlapping_locus +26691 chr16 HAVANA gene 29812261 29820092 2252.0 + 0 ENSG00000280893.1 protein_coding AC009133.6 2 OTTHUMG00000189724.1 overlapping_locus +26692 chr16 HAVANA gene 29815952 29820117 1702.0 + 0 ENSG00000280789.1 protein_coding PAGR1 2 OTTHUMG00000177143.8 overlapping_locus +26693 chr16 HAVANA gene 29808636 29821252 4039.0 - 0 ENSG00000238045.9 antisense AC009133.1 2 OTTHUMG00000132117.4 overlapping_locus +26694 chr16 HAVANA gene 29817239 29830627 556.0 + 0 ENSG00000281348.1 protein_coding AC120114.4 2 OTTHUMG00000178205.2 overlapping_locus +26695 chr16 HAVANA gene 29820394 29848039 6141.0 + 0 ENSG00000013364.18 protein_coding MVP 2 OTTHUMG00000048227.10 overlapping_locus +26696 chr16 HAVANA gene 29862760 29863417 658.0 + 0 ENSG00000278713.1 antisense AC120114.2 2 OTTHUMG00000186861.1 +26697 chr16 HAVANA gene 29858357 29863736 3325.0 - 0 ENSG00000103502.13 protein_coding CDIPT 1 OTTHUMG00000177144.3 +26698 chr16 HAVANA gene 29863593 29868053 900.0 + 0 ENSG00000214725.9 transcribed_unitary_pseudogene CDIPTOSP 2 OTTHUMG00000177145.5 +26699 chr16 HAVANA gene 29871159 29899547 4110.0 - 0 ENSG00000174938.14 protein_coding SEZ6L2 1 OTTHUMG00000132112.4 +26700 chr16 HAVANA gene 29913144 29915337 2194.0 - 0 ENSG00000279789.1 TEC AC120114.3 2 OTTHUMG00000177146.1 overlapping_locus +26701 chr16 HAVANA gene 29900375 29919864 2312.0 + 0 ENSG00000174939.10 protein_coding ASPHD1 1 OTTHUMG00000132121.6 +26702 chr16 HAVANA gene 29905012 29927035 7260.0 - 0 ENSG00000174943.10 protein_coding KCTD13 1 OTTHUMG00000132120.5 overlapping_locus +26703 chr16 HAVANA gene 29926836 29928933 1762.0 + 0 ENSG00000247735.2 antisense AC120114.1 2 OTTHUMG00000177148.1 +26704 chr16 HAVANA gene 29940885 29973052 2428.0 + 0 ENSG00000149932.16 protein_coding TMEM219 1 OTTHUMG00000177105.6 +26705 chr16 HAVANA gene 29973641 29992261 9058.0 + 0 ENSG00000149930.17 protein_coding TAOK2 2 OTTHUMG00000132111.3 +26706 chr16 HAVANA gene 29992321 29996436 3931.0 - 0 ENSG00000149929.15 protein_coding HIRIP3 1 OTTHUMG00000132118.4 +26707 chr16 HAVANA gene 29995294 30005793 6076.0 + 0 ENSG00000169592.14 protein_coding INO80E 2 OTTHUMG00000132114.6 +26708 chr16 HAVANA gene 30005509 30023270 6426.0 - 0 ENSG00000149927.17 protein_coding DOC2A 2 OTTHUMG00000132109.8 +26709 chr16 HAVANA gene 30023334 30027736 1115.0 + 0 ENSG00000167194.7 protein_coding C16orf92 2 OTTHUMG00000177107.1 +26710 chr16 HAVANA gene 30024427 30052978 4920.0 - 0 ENSG00000149926.13 protein_coding FAM57B 1 OTTHUMG00000132105.6 +26711 chr16 HAVANA gene 30064306 30064825 520.0 - 0 ENSG00000274904.1 antisense AC093512.1 2 OTTHUMG00000186864.1 +26712 chr16 HAVANA gene 30053090 30070420 3369.0 + 0 ENSG00000285043.1 protein_coding AC093512.2 2 OTTHUMG00000192461.2 overlapping_locus +26713 chr16 HAVANA gene 30064164 30070457 3916.0 + 0 ENSG00000149925.18 protein_coding ALDOA 1 OTTHUMG00000132107.11 overlapping_locus +26714 chr16 HAVANA gene 30075978 30085377 2734.0 + 0 ENSG00000149923.13 protein_coding PPP4C 2 OTTHUMG00000132113.4 +26715 chr16 HAVANA gene 30085793 30091887 3137.0 - 0 ENSG00000149922.10 protein_coding TBX6 2 OTTHUMG00000132115.6 +26716 chr16 HAVANA gene 30092314 30096915 3181.0 - 0 ENSG00000090238.11 protein_coding YPEL3 2 OTTHUMG00000176853.1 +26717 chr16 HAVANA gene 30096430 30104116 1650.0 + 0 ENSG00000250616.2 antisense AC012645.1 2 OTTHUMG00000176855.1 +26718 chr16 HAVANA gene 30107675 30110541 553.0 + 0 ENSG00000261367.1 antisense AC012645.2 2 OTTHUMG00000176856.1 +26719 chr16 HAVANA gene 30110895 30111955 1061.0 + 0 ENSG00000275371.1 antisense AC012645.4 2 OTTHUMG00000186865.1 +26720 chr16 HAVANA gene 30104810 30113856 1891.0 - 0 ENSG00000102886.14 protein_coding GDPD3 2 OTTHUMG00000132106.3 +26721 chr16 HAVANA gene 30114105 30123506 3669.0 - 0 ENSG00000102882.11 protein_coding MAPK3 1 OTTHUMG00000132149.7 +26722 chr16 HAVANA gene 30183505 30184957 811.0 - 0 ENSG00000261416.1 antisense AC012645.3 2 OTTHUMG00000176857.1 +26723 chr16 HAVANA gene 30182827 30189076 4871.0 + 0 ENSG00000102879.15 protein_coding CORO1A 1 OTTHUMG00000132148.2 +26724 chr16 HAVANA gene 30192934 30194306 1365.0 - 0 ENSG00000169627.7 protein_coding BOLA2B 2 OTTHUMG00000176858.1 +26725 chr16 HAVANA gene 30193887 30197561 2464.0 + 0 ENSG00000132207.17 protein_coding SLX1A 2 OTTHUMG00000176859.1 overlapping_locus +26726 chr16 HAVANA gene 30193892 30204310 4611.0 + 0 ENSG00000213599.10 processed_transcript SLX1A-SULT1A3 2 OTTHUMG00000048084.2 overlapping_locus +26727 chr16 HAVANA gene 30199228 30204310 2561.0 + 0 ENSG00000261052.5 protein_coding SULT1A3 2 OTTHUMG00000048083.3 overlapping_locus +26728 chr16 HAVANA gene 30205418 30206927 988.0 + 0 ENSG00000278887.2 transcribed_unprocessed_pseudogene AC106782.7 2 OTTHUMG00000170487.2 +26729 chr16 HAVANA gene 30204316 30209071 2707.0 - 0 ENSG00000258130.8 transcribed_unprocessed_pseudogene AC106782.1 2 OTTHUMG00000170482.4 +26730 chr16 HAVANA gene 30214409 30214699 210.0 + 0 ENSG00000261444.1 unprocessed_pseudogene AC106782.4 1 OTTHUMG00000176860.1 pseudo_consens +26731 chr16 HAVANA gene 30218220 30221930 258.0 + 0 ENSG00000261203.1 unprocessed_pseudogene AC106782.3 2 OTTHUMG00000176861.1 +26732 chr16 HAVANA gene 30222937 30254510 5202.0 - 0 ENSG00000198064.13 protein_coding NPIPB13 2 OTTHUMG00000163556.2 +26733 chr16 HAVANA gene 30267553 30335374 4791.0 - 0 ENSG00000183604.14 transcribed_unprocessed_pseudogene SMG1P5 2 OTTHUMG00000166915.2 +26734 chr16 HAVANA gene 30336400 30343336 337.0 + 0 ENSG00000273724.1 unprocessed_pseudogene AC106782.5 2 OTTHUMG00000187966.1 +26735 chr16 HAVANA gene 30350766 30355361 3773.0 - 0 ENSG00000169217.8 protein_coding CD2BP2 2 OTTHUMG00000132397.2 +26736 chr16 HAVANA gene 30355441 30357104 992.0 + 0 ENSG00000260219.2 lincRNA AC106782.2 1 OTTHUMG00000176862.2 +26737 chr16 HAVANA gene 30359825 30360336 512.0 + 0 ENSG00000274653.1 antisense AC106782.6 2 OTTHUMG00000186866.2 +26738 chr16 HAVANA gene 30357102 30370264 6699.0 - 0 ENSG00000169221.13 protein_coding TBC1D10B 2 OTTHUMG00000132396.5 +26739 chr16 HAVANA gene 30370934 30377991 1119.0 + 0 ENSG00000180209.11 protein_coding MYLPF 2 OTTHUMG00000132399.3 +26740 chr16 HAVANA gene 30379763 30380110 348.0 - 0 ENSG00000280137.1 TEC AC116348.4 2 OTTHUMG00000184132.1 overlapping_locus +26741 chr16 HAVANA gene 30378133 30395991 4217.0 - 0 ENSG00000180096.11 protein_coding SEPT1 2 OTTHUMG00000176984.4 overlapping_locus +26742 chr16 HAVANA gene 30378106 30400108 3744.0 + 0 ENSG00000180035.12 protein_coding ZNF48 2 OTTHUMG00000048195.6 +26743 chr16 ENSEMBL gene 30419625 30419759 135.0 - 0 ENSG00000199787.1 snoRNA RF00406 3 +26744 chr16 HAVANA gene 30423619 30430075 1581.0 - 0 ENSG00000179958.8 protein_coding DCTPP1 1 OTTHUMG00000132416.4 +26745 chr16 HAVANA gene 30407297 30431108 5637.0 + 0 ENSG00000179965.11 protein_coding ZNF771 1 OTTHUMG00000176985.3 +26746 chr16 HAVANA gene 30443631 30446181 2551.0 - 0 ENSG00000179918.18 protein_coding SEPHS2 2 OTTHUMG00000176988.11 retrogene +26747 chr16 ENSEMBL gene 30453997 30454097 101.0 - 0 ENSG00000202476.1 misc_RNA RF00019 3 +26748 chr16 ENSEMBL gene 30471587 30471703 117.0 + 0 ENSG00000222701.1 misc_RNA RF00019 3 +26749 chr16 HAVANA gene 30480588 30481346 528.0 - 0 ENSG00000260487.1 antisense AC116348.1 2 OTTHUMG00000176966.1 overlapping_locus +26750 chr16 ENSEMBL gene 30483135 30483195 61.0 - 0 ENSG00000251706.1 snRNA RNU7-61P 3 +26751 chr16 HAVANA gene 30477180 30489353 699.0 - 0 ENSG00000261346.1 antisense AC116348.3 2 OTTHUMG00000176965.1 ncRNA_host,overlapping_locus +26752 chr16 HAVANA gene 30498766 30499554 577.0 - 0 ENSG00000261332.1 antisense AC116348.2 2 OTTHUMG00000176967.1 +26753 chr16 ENSEMBL gene 30503919 30504001 83.0 + 0 ENSG00000266305.1 miRNA MIR4518 3 +26754 chr16 HAVANA gene 30472658 30523185 6472.0 + 0 ENSG00000005844.17 protein_coding ITGAL 1 OTTHUMG00000176964.4 ncRNA_host +26755 chr16 HAVANA gene 30524001 30526821 2395.0 - 0 ENSG00000169957.9 protein_coding ZNF768 2 OTTHUMG00000132392.4 overlapping_locus +26756 chr16 HAVANA gene 30526918 30528294 1377.0 + 0 ENSG00000278922.1 TEC AC002310.6 2 OTTHUMG00000176945.1 +26757 chr16 HAVANA gene 30525923 30534852 1515.0 - 0 ENSG00000261459.1 protein_coding AC002310.5 2 OTTHUMG00000176944.1 overlapping_locus +26758 chr16 HAVANA gene 30530367 30535347 3936.0 - 0 ENSG00000169955.7 protein_coding ZNF747 2 OTTHUMG00000132401.2 overlapping_locus +26759 chr16 HAVANA gene 30534752 30537144 1827.0 + 0 ENSG00000235560.3 antisense AC002310.1 2 OTTHUMG00000176947.1 +26760 chr16 HAVANA gene 30537202 30538231 723.0 - 0 ENSG00000260494.1 unprocessed_pseudogene AC002310.3 1 OTTHUMG00000176948.1 pseudo_consens,overlapping_locus +26761 chr16 HAVANA gene 30534227 30558279 377.0 - 0 ENSG00000260869.1 protein_coding AC002310.4 2 OTTHUMG00000176946.2 overlapping_locus +26762 chr16 HAVANA gene 30553764 30558498 3113.0 - 0 ENSG00000169951.9 protein_coding ZNF764 2 OTTHUMG00000132406.2 overlapping_locus +26763 chr16 HAVANA gene 30569346 30572734 3023.0 - 0 ENSG00000229809.8 protein_coding ZNF688 2 OTTHUMG00000132408.5 +26764 chr16 HAVANA gene 30572250 30583860 1918.0 + 0 ENSG00000239791.1 antisense AC002310.2 2 OTTHUMG00000158416.1 +26765 chr16 HAVANA gene 30573740 30585771 4952.0 - 0 ENSG00000197162.9 protein_coding ZNF785 2 OTTHUMG00000176950.3 +26766 chr16 HAVANA gene 30587662 30587920 259.0 - 0 ENSG00000261588.1 processed_pseudogene AC093249.4 2 OTTHUMG00000132398.3 +26767 chr16 HAVANA gene 30585907 30608593 482.0 + 0 ENSG00000260167.1 antisense AC093249.2 2 OTTHUMG00000176951.1 +26768 chr16 HAVANA gene 30615256 30615679 424.0 - 0 ENSG00000260678.1 transcribed_processed_pseudogene AC093249.3 2 OTTHUMG00000176952.1 overlapping_locus +26769 chr16 HAVANA gene 30602558 30624012 4159.0 - 0 ENSG00000156853.12 protein_coding ZNF689 2 OTTHUMG00000132415.2 overlapping_locus +26770 chr16 HAVANA gene 30624285 30624714 430.0 - 0 ENSG00000261680.1 processed_pseudogene AC093249.5 2 OTTHUMG00000176953.1 +26771 chr16 HAVANA gene 30626976 30627178 203.0 + 0 ENSG00000260113.3 processed_pseudogene AC093249.1 1 OTTHUMG00000176954.3 pseudo_consens +26772 chr16 HAVANA gene 30650717 30656440 3860.0 + 0 ENSG00000156858.11 protein_coding PRR14 1 OTTHUMG00000132414.4 +26773 chr16 HAVANA gene 30658431 30670814 7218.0 + 0 ENSG00000156860.15 protein_coding FBRS 2 OTTHUMG00000132390.11 +26774 chr16 ENSEMBL gene 30675300 30675402 103.0 - 0 ENSG00000252074.1 snRNA RNU6-416P 3 +26775 chr16 HAVANA gene 30697707 30699058 1148.0 - 0 ENSG00000261840.2 antisense AC093249.6 2 OTTHUMG00000176915.2 +26776 chr16 ENSEMBL gene 30701337 30701435 99.0 - 0 ENSG00000222287.1 snRNA RNU6-1043P 3 +26777 chr16 ENSEMBL gene 30710537 30710665 129.0 + 0 ENSG00000206755.1 snoRNA SNORA30 3 +26778 chr16 HAVANA gene 30698209 30741409 13674.0 + 0 ENSG00000080603.16 protein_coding SRCAP 2 OTTHUMG00000132393.5 ncRNA_host,overlapping_locus +26779 chr16 HAVANA gene 30740381 30744281 995.0 + 0 ENSG00000281991.1 protein_coding TMEM265 2 OTTHUMG00000191414.1 overlapping_locus +26780 chr16 HAVANA gene 30704067 30745169 11692.0 + 0 ENSG00000282034.1 protein_coding AC106886.5 2 OTTHUMG00000191413.1 ncRNA_host,overlapping_locus +26781 chr16 HAVANA gene 30740667 30751381 883.0 + 0 ENSG00000260899.1 processed_transcript AC106886.2 2 OTTHUMG00000176916.1 overlapping_locus +26782 chr16 HAVANA gene 30748270 30761176 7509.0 + 0 ENSG00000156873.15 protein_coding PHKG2 1 OTTHUMG00000132400.6 overlapping_locus +26783 chr16 HAVANA gene 30757423 30762710 3081.0 - 0 ENSG00000196118.11 protein_coding CCDC189 2 OTTHUMG00000167926.4 +26784 chr16 HAVANA gene 30773532 30776033 2502.0 - 0 ENSG00000280211.1 TEC AC106886.4 2 OTTHUMG00000176904.1 +26785 chr16 HAVANA gene 30761745 30776307 6523.0 + 0 ENSG00000103549.21 protein_coding RNF40 1 OTTHUMG00000132394.8 +26786 chr16 HAVANA gene 30778449 30787202 6087.0 - 0 ENSG00000102870.5 protein_coding ZNF629 2 OTTHUMG00000176905.2 +26787 chr16 ENSEMBL gene 30816030 30816302 273.0 + 0 ENSG00000274848.1 misc_RNA RF00017 3 +26788 chr16 HAVANA gene 30821338 30821884 547.0 + 0 ENSG00000274678.1 lincRNA AC106886.3 2 OTTHUMG00000186883.1 +26789 chr16 HAVANA gene 30821068 30822110 600.0 - 0 ENSG00000260082.1 processed_pseudogene AC106886.1 1 OTTHUMG00000176917.1 pseudo_consens +26790 chr16 ENSEMBL gene 30875266 30875323 58.0 - 0 ENSG00000265991.1 miRNA MIR4519 3 +26791 chr16 ENSEMBL gene 30893903 30893985 83.0 + 0 ENSG00000211591.1 miRNA MIR762 3 +26792 chr16 HAVANA gene 30833626 30894960 4398.0 - 0 ENSG00000099385.11 protein_coding BCL7C 2 OTTHUMG00000177719.2 ncRNA_host,overlapping_locus +26793 chr16 HAVANA gene 30875766 30895216 561.0 - 0 ENSG00000262721.1 sense_overlapping AC135048.2 2 OTTHUMG00000176779.2 overlapping_locus +26794 chr16 HAVANA gene 30875222 30895220 1815.0 + 0 ENSG00000260083.1 antisense MIR762HG 2 OTTHUMG00000176766.2 ncRNA_host +26795 chr16 HAVANA gene 30896607 30903560 1664.0 + 0 ENSG00000150281.6 protein_coding CTF1 2 OTTHUMG00000132413.2 +26796 chr16 HAVANA gene 30904348 30910208 604.0 - 0 ENSG00000230447.2 unitary_pseudogene CTF2P 2 OTTHUMG00000154385.1 +26797 chr16 HAVANA gene 30919319 30923269 3951.0 - 0 ENSG00000260852.1 antisense FBXL19-AS1 2 OTTHUMG00000176767.1 +26798 chr16 HAVANA gene 30923055 30948783 4340.0 + 0 ENSG00000099364.16 protein_coding FBXL19 1 OTTHUMG00000132403.6 overlapping_locus +26799 chr16 HAVANA gene 30949066 30956461 2643.0 + 0 ENSG00000175938.6 protein_coding ORAI3 1 OTTHUMG00000176768.47 overlapping_locus +26800 chr16 HAVANA gene 30948386 30956511 1630.0 + 0 ENSG00000261487.1 processed_transcript AC135048.1 1 OTTHUMG00000132409.48 overlapping_locus +26801 chr16 HAVANA gene 30956872 30957199 328.0 - 0 ENSG00000275263.1 lincRNA AC135048.3 2 OTTHUMG00000186886.1 +26802 chr16 HAVANA gene 30957294 30984664 6832.0 + 0 ENSG00000099381.17 protein_coding SETD1A 2 OTTHUMG00000150474.4 +26803 chr16 HAVANA gene 30984630 30988270 3641.0 - 0 ENSG00000279196.1 TEC AC135048.4 2 OTTHUMG00000176774.2 +26804 chr16 HAVANA gene 30985207 30989152 2495.0 + 0 ENSG00000099377.13 protein_coding HSD3B7 2 OTTHUMG00000132417.5 +26805 chr16 HAVANA gene 30989256 31010661 5229.0 - 0 ENSG00000099365.10 protein_coding STX1B 2 OTTHUMG00000132391.4 +26806 chr16 HAVANA gene 31032889 31042975 4078.0 + 0 ENSG00000103496.14 protein_coding STX4 1 OTTHUMG00000132404.11 +26807 chr16 HAVANA gene 31043150 31049868 449.0 + 0 ENSG00000260911.2 lincRNA AC135050.3 2 OTTHUMG00000176730.2 +26808 chr16 HAVANA gene 31056460 31062803 3593.0 + 0 ENSG00000232748.3 lincRNA AC135050.1 2 OTTHUMG00000187304.1 +26809 chr16 HAVANA gene 31065495 31069246 504.0 + 0 ENSG00000261124.1 antisense AC135050.4 2 OTTHUMG00000176748.1 +26810 chr16 HAVANA gene 31060843 31074320 3935.0 - 0 ENSG00000167394.12 protein_coding ZNF668 2 OTTHUMG00000047357.5 +26811 chr16 HAVANA gene 31074422 31084196 8635.0 + 0 ENSG00000167395.10 protein_coding ZNF646 2 OTTHUMG00000047355.3 +26812 chr16 HAVANA gene 31083425 31089628 5501.0 - 0 ENSG00000151006.7 protein_coding PRSS53 2 OTTHUMG00000047358.6 overlapping_locus +26813 chr16 HAVANA gene 31083439 31094956 2716.0 - 0 ENSG00000255439.6 protein_coding AC135050.2 2 OTTHUMG00000166077.3 overlapping_locus +26814 chr16 HAVANA gene 31093727 31095944 2218.0 + 0 ENSG00000280160.1 TEC AC135050.7 2 OTTHUMG00000176775.1 +26815 chr16 HAVANA gene 31090842 31095980 2191.0 - 0 ENSG00000167397.14 protein_coding VKORC1 1 OTTHUMG00000047408.6 overlapping_locus +26816 chr16 HAVANA gene 31106107 31112791 3873.0 + 0 ENSG00000103507.13 protein_coding BCKDK 1 OTTHUMG00000047356.6 +26817 chr16 HAVANA gene 31118078 31118747 543.0 + 0 ENSG00000262766.1 sense_intronic AC135050.5 2 OTTHUMG00000177740.1 overlapping_locus +26818 chr16 HAVANA gene 31122235 31124064 756.0 + 0 ENSG00000278133.1 sense_intronic AC135050.6 2 OTTHUMG00000186894.1 overlapping_locus +26819 chr16 HAVANA gene 31115754 31131393 4334.0 + 0 ENSG00000103510.19 protein_coding KAT8 1 OTTHUMG00000132410.7 overlapping_locus +26820 chr16 HAVANA gene 31131433 31131877 357.0 + 0 ENSG00000261385.1 antisense AC009088.3 2 OTTHUMG00000176749.1 +26821 chr16 HAVANA gene 31131433 31135762 3010.0 - 0 ENSG00000052344.15 protein_coding PRSS8 1 OTTHUMG00000176750.4 +26822 chr16 HAVANA gene 31138925 31150094 3685.0 - 0 ENSG00000178226.10 protein_coding PRSS36 2 OTTHUMG00000176751.3 +26823 chr16 HAVANA gene 31165648 31165927 280.0 + 0 ENSG00000263343.1 processed_pseudogene AC009088.4 1 OTTHUMG00000177741.2 pseudo_consens +26824 chr16 HAVANA gene 31174573 31174822 250.0 + 0 ENSG00000262366.1 processed_pseudogene NDUFA3P6 1 OTTHUMG00000177742.2 pseudo_consens +26825 chr16 HAVANA gene 31182511 31183285 463.0 - 0 ENSG00000260304.1 antisense AC009088.2 2 OTTHUMG00000176752.1 +26826 chr16 HAVANA gene 31180110 31194871 10283.0 + 0 ENSG00000089280.18 protein_coding FUS 2 OTTHUMG00000132395.5 +26827 chr16 HAVANA gene 31196131 31196963 833.0 + 0 ENSG00000260060.1 antisense AC009088.1 2 OTTHUMG00000176115.1 +26828 chr16 HAVANA gene 31201485 31203450 1661.0 - 0 ENSG00000103490.13 protein_coding PYCARD 2 OTTHUMG00000176753.31 +26829 chr16 HAVANA gene 31201885 31203452 1095.0 + 0 ENSG00000261359.2 antisense PYCARD-AS1 2 OTTHUMG00000132405.32 +26830 chr16 HAVANA gene 31215962 31217359 861.0 - 0 ENSG00000169900.7 protein_coding PYDC1 2 OTTHUMG00000132407.2 +26831 chr16 HAVANA gene 31214021 31231537 8500.0 + 0 ENSG00000177238.13 protein_coding TRIM72 2 OTTHUMG00000176754.2 +26832 chr16 HAVANA gene 31259967 31332892 5688.0 + 0 ENSG00000169896.17 protein_coding ITGAM 1 OTTHUMG00000176612.7 +26833 chr16 HAVANA gene 31361278 31361695 333.0 - 0 ENSG00000261245.2 unprocessed_pseudogene AC093520.2 2 OTTHUMG00000176613.2 +26834 chr16 HAVANA gene 31355134 31382997 7074.0 + 0 ENSG00000140678.16 protein_coding ITGAX 2 OTTHUMG00000132465.4 +26835 chr16 HAVANA gene 31402565 31404699 1767.0 + 0 ENSG00000260757.1 sense_overlapping AC093520.1 2 OTTHUMG00000176615.1 overlapping_locus +26836 chr16 HAVANA gene 31393312 31426505 4411.0 + 0 ENSG00000156886.11 protein_coding ITGAD 2 OTTHUMG00000176614.1 overlapping_locus +26837 chr16 HAVANA gene 31427731 31428428 541.0 - 0 ENSG00000156885.5 protein_coding COX6A2 2 OTTHUMG00000132463.3 +26838 chr16 HAVANA gene 31428180 31428646 467.0 + 0 ENSG00000277543.1 antisense AC026471.5 2 OTTHUMG00000186897.1 +26839 chr16 HAVANA gene 31432593 31443160 4564.0 - 0 ENSG00000176723.9 protein_coding ZNF843 2 OTTHUMG00000176616.2 +26840 chr16 HAVANA gene 31449535 31453493 449.0 - 0 ENSG00000261474.1 lincRNA AC026471.4 2 OTTHUMG00000176118.1 +26841 chr16 HAVANA gene 31456711 31459736 3026.0 - 0 ENSG00000260267.1 antisense AC026471.1 2 OTTHUMG00000176617.1 +26842 chr16 HAVANA gene 31458080 31467166 5545.0 + 0 ENSG00000140691.16 protein_coding ARMC5 1 OTTHUMG00000176618.3 +26843 chr16 HAVANA gene 31470204 31472108 1905.0 - 0 ENSG00000280132.1 TEC AC026471.6 2 OTTHUMG00000176619.1 +26844 chr16 HAVANA gene 31471585 31477960 5403.0 + 0 ENSG00000140682.18 protein_coding TGFB1I1 2 OTTHUMG00000132467.6 +26845 chr16 HAVANA gene 31487370 31488492 578.0 - 0 ENSG00000260740.2 antisense AC026471.3 2 OTTHUMG00000132464.3 +26846 chr16 HAVANA gene 31483002 31490860 4468.0 + 0 ENSG00000140675.12 protein_coding SLC5A2 2 OTTHUMG00000176620.4 +26847 chr16 HAVANA gene 31508471 31509256 655.0 + 0 ENSG00000260625.2 antisense AC026471.2 2 OTTHUMG00000176621.3 +26848 chr16 HAVANA gene 31489471 31509309 3630.0 - 0 ENSG00000140688.16 protein_coding C16orf58 1 OTTHUMG00000132466.4 +26849 chr16 HAVANA gene 31527864 31528803 562.0 + 0 ENSG00000169877.9 protein_coding AHSP 2 OTTHUMG00000132461.3 +26850 chr16 HAVANA gene 31546698 31547237 540.0 - 0 ENSG00000261648.1 lincRNA AC106730.1 2 OTTHUMG00000176622.1 +26851 chr16 HAVANA gene 31546805 31547737 933.0 + 0 ENSG00000213547.3 unitary_pseudogene VN1R64P 2 OTTHUMG00000154494.1 +26852 chr16 HAVANA gene 31549143 31553567 568.0 - 0 ENSG00000261475.2 lincRNA LINC02190 2 OTTHUMG00000177758.1 +26853 chr16 HAVANA gene 31554105 31554912 808.0 + 0 ENSG00000260883.1 unitary_pseudogene VN1R65P 2 OTTHUMG00000176624.1 +26854 chr16 HAVANA gene 31566360 31567000 641.0 - 0 ENSG00000278885.1 TEC AC106730.2 2 OTTHUMG00000184121.1 overlapping_locus +26855 chr16 HAVANA gene 31563082 31567716 1205.0 - 0 ENSG00000261741.5 transcribed_unprocessed_pseudogene FRG2KP 2 OTTHUMG00000176625.1 overlapping_locus +26856 chr16 HAVANA gene 31568386 31569475 1090.0 - 0 ENSG00000261614.1 processed_pseudogene YBX3P1 1 OTTHUMG00000176626.1 pseudo_consens +26857 chr16 HAVANA gene 31601593 31603531 1939.0 - 0 ENSG00000260010.1 processed_pseudogene ZNF720P1 2 OTTHUMG00000176627.1 +26858 chr16 HAVANA gene 31648307 31649222 916.0 + 0 ENSG00000237185.1 unprocessed_pseudogene VN1R66P 2 OTTHUMG00000154473.1 +26859 chr16 HAVANA gene 31680847 31682101 1255.0 + 0 ENSG00000260631.1 processed_pseudogene RBM22P12 2 OTTHUMG00000154500.2 +26860 chr16 HAVANA gene 31697397 31697607 211.0 - 0 ENSG00000260472.1 processed_pseudogene AC074050.1 1 OTTHUMG00000176628.1 pseudo_consens +26861 chr16 HAVANA gene 31699676 31700465 538.0 - 0 ENSG00000260568.1 lincRNA AC074050.2 2 OTTHUMG00000176629.1 +26862 chr16 HAVANA gene 31704728 31705260 533.0 + 0 ENSG00000276867.1 lincRNA AC074050.4 2 OTTHUMG00000186902.1 overlapping_locus +26863 chr16 HAVANA gene 31709113 31711984 441.0 - 0 ENSG00000261731.2 antisense AC074050.3 2 OTTHUMG00000176630.2 +26864 chr16 HAVANA gene 31700590 31711986 6235.0 + 0 ENSG00000131797.12 transcribed_unprocessed_pseudogene CLUHP3 2 OTTHUMG00000132462.6 overlapping_locus +26865 chr16 HAVANA gene 31788202 31790993 2792.0 + 0 ENSG00000259810.2 sense_intronic AC002519.1 2 OTTHUMG00000177769.2 overlapping_locus +26866 chr16 HAVANA gene 31713229 31794869 9816.0 + 0 ENSG00000197302.10 protein_coding ZNF720 2 OTTHUMG00000167515.5 overlapping_locus +26867 chr16 HAVANA gene 31801585 31802497 913.0 - 0 ENSG00000260722.1 unitary_pseudogene VN1R67P 2 OTTHUMG00000176632.1 +26868 chr16 HAVANA gene 31802947 31807973 1458.0 + 0 ENSG00000261457.3 transcribed_processed_pseudogene AC002519.2 1 OTTHUMG00000176633.2 pseudo_consens +26869 chr16 HAVANA gene 31807926 31808844 919.0 - 0 ENSG00000180663.5 unitary_pseudogene VN1R3 2 OTTHUMG00000176634.1 +26870 chr16 HAVANA gene 31863633 31864876 1244.0 + 0 ENSG00000261284.2 processed_pseudogene RBM22P13 2 OTTHUMG00000176533.2 +26871 chr16 HAVANA gene 31870887 31871124 238.0 - 0 ENSG00000259874.1 processed_pseudogene AC034105.2 1 OTTHUMG00000176534.1 pseudo_consens +26872 chr16 HAVANA gene 31894542 31894983 442.0 - 0 ENSG00000259950.1 processed_pseudogene AC034105.3 1 OTTHUMG00000177770.1 pseudo_consens +26873 chr16 HAVANA gene 31873758 31917357 6333.0 + 0 ENSG00000185947.14 protein_coding ZNF267 2 OTTHUMG00000176535.17 +26874 chr16 HAVANA gene 31952160 31952473 314.0 + 0 ENSG00000261289.2 processed_pseudogene AC034105.5 2 OTTHUMG00000176537.2 +26875 chr16 HAVANA gene 31962063 31962381 319.0 + 0 ENSG00000197476.3 processed_pseudogene AC034105.1 2 OTTHUMG00000176538.1 +26876 chr16 HAVANA gene 31963803 31964079 277.0 + 0 ENSG00000260218.1 processed_pseudogene AC034105.4 2 OTTHUMG00000176539.1 +26877 chr16 HAVANA gene 31975803 32003728 2227.0 + 0 ENSG00000260628.5 transcribed_unprocessed_pseudogene AC142381.3 2 OTTHUMG00000176540.1 +26878 chr16 HAVANA gene 32034853 32035326 392.0 + 0 ENSG00000261704.2 IG_V_pseudogene IGHV1OR16-1 2 OTTHUMG00000176645.2 +26879 chr16 HAVANA gene 32051825 32052280 345.0 + 0 ENSG00000223931.2 unprocessed_pseudogene AC142381.1 2 OTTHUMG00000187301.1 +26880 chr16 HAVANA gene 32059084 32059372 205.0 + 0 ENSG00000260048.2 IG_V_pseudogene IGHV1OR16-3 2 OTTHUMG00000176557.2 +26881 chr16 HAVANA gene 32066065 32066358 294.0 + 0 ENSG00000270472.2 IG_V_gene IGHV3OR16-9 2 OTTHUMG00000184753.2 +26882 chr16 HAVANA gene 32008438 32084785 715.0 - 0 ENSG00000261727.2 transcribed_processed_pseudogene AC142381.4 2 OTTHUMG00000176559.1 +26883 chr16 HAVANA gene 32116700 32116997 298.0 + 0 ENSG00000260584.1 processed_pseudogene AC142381.2 2 OTTHUMG00000176561.1 +26884 chr16 HAVANA gene 32185624 32186311 688.0 + 0 ENSG00000279997.1 TEC AC133485.6 2 OTTHUMG00000176564.1 +26885 chr16 HAVANA gene 32103245 32188107 6046.0 - 0 ENSG00000230267.7 transcribed_unprocessed_pseudogene HERC2P4 2 OTTHUMG00000176563.1 +26886 chr16 HAVANA gene 32189262 32189481 220.0 + 0 ENSG00000260649.1 transcribed_processed_pseudogene AC133485.4 1 OTTHUMG00000176566.1 pseudo_consens,overlapping_locus +26887 chr16 HAVANA gene 32188333 32193530 866.0 + 0 ENSG00000260847.1 lincRNA AC133485.5 2 OTTHUMG00000176565.1 overlapping_locus +26888 chr16 HAVANA gene 32199902 32202822 574.0 + 0 ENSG00000260540.2 unprocessed_pseudogene ABHD17AP8 2 OTTHUMG00000176567.2 +26889 chr16 HAVANA gene 32213380 32213503 124.0 - 0 ENSG00000260344.2 processed_pseudogene AC133485.1 2 OTTHUMG00000176568.2 +26890 chr16 HAVANA gene 32250620 32254422 262.0 - 0 ENSG00000260575.1 antisense AC133485.3 2 OTTHUMG00000176569.1 +26891 chr16 HAVANA gene 32252719 32255922 2922.0 + 0 ENSG00000205456.11 protein_coding TP53TG3D 1 OTTHUMG00000132469.4 +26892 chr16 HAVANA gene 32262827 32265514 2484.0 - 0 ENSG00000260402.1 lincRNA AC133485.2 2 OTTHUMG00000176123.2 +26893 chr16 HAVANA gene 32278866 32279115 250.0 + 0 ENSG00000259822.2 processed_pseudogene AC140878.1 2 OTTHUMG00000176570.2 +26894 chr16 HAVANA gene 32289547 32310555 2605.0 - 0 ENSG00000261127.2 transcribed_processed_pseudogene AC133548.2 2 OTTHUMG00000176571.2 +26895 chr16 HAVANA gene 32356981 32363695 242.0 - 0 ENSG00000260516.2 unprocessed_pseudogene AC133548.1 2 OTTHUMG00000176573.2 +26896 chr16 HAVANA gene 32379071 32380049 979.0 - 0 ENSG00000260327.2 processed_pseudogene ACTR3BP3 1 OTTHUMG00000176495.2 pseudo_consens +26897 chr16 HAVANA gene 32388135 32436200 1389.0 + 0 ENSG00000260866.1 unprocessed_pseudogene AC138915.2 2 OTTHUMG00000176496.1 +26898 chr16 HAVANA gene 32439069 32441159 1685.0 - 0 ENSG00000260307.2 processed_pseudogene PABPC1P13 1 OTTHUMG00000176497.2 pseudo_consens +26899 chr16 HAVANA gene 32454612 32458758 4147.0 - 0 ENSG00000261541.1 lincRNA AC138915.3 2 OTTHUMG00000176498.1 +26900 chr16 HAVANA gene 32460266 32460362 97.0 - 0 ENSG00000260662.2 processed_pseudogene AC138915.1 2 OTTHUMG00000176499.2 +26901 chr16 HAVANA gene 32475051 32478250 605.0 - 0 ENSG00000261233.2 unprocessed_pseudogene ABCD1P3 2 OTTHUMG00000176500.2 +26902 chr16 HAVANA gene 32600299 32615639 1158.0 + 0 ENSG00000259966.5 transcribed_unprocessed_pseudogene AC137800.1 2 OTTHUMG00000177778.1 +26903 chr16 HAVANA gene 32618733 32618852 120.0 + 0 ENSG00000262187.1 unprocessed_pseudogene AC137800.2 2 OTTHUMG00000176501.2 +26904 chr16 HAVANA gene 32635673 32636045 373.0 - 0 ENSG00000261111.1 processed_pseudogene AC133569.1 1 OTTHUMG00000176502.1 pseudo_consens +26905 chr16 HAVANA gene 32650195 32650910 420.0 - 0 ENSG00000261263.2 transcribed_processed_pseudogene AC138907.5 2 OTTHUMG00000176505.1 +26906 chr16 HAVANA gene 32649193 32663956 812.0 + 0 ENSG00000261569.5 lincRNA AC138907.7 2 OTTHUMG00000176503.1 overlapping_locus +26907 chr16 HAVANA gene 32663925 32666533 2405.0 + 0 ENSG00000260311.1 lincRNA AC138907.1 2 OTTHUMG00000176506.1 overlapping_locus +26908 chr16 HAVANA gene 32673528 32676732 3004.0 - 0 ENSG00000183632.14 protein_coding TP53TG3 2 OTTHUMG00000176507.3 +26909 chr16 HAVANA gene 32675037 32678831 262.0 + 0 ENSG00000260974.1 antisense AC138907.3 2 OTTHUMG00000176508.1 +26910 chr16 HAVANA gene 32715931 32716056 126.0 + 0 ENSG00000261391.1 processed_pseudogene AC138907.6 2 OTTHUMG00000176509.1 +26911 chr16 HAVANA gene 32726615 32729537 595.0 - 0 ENSG00000260864.1 unprocessed_pseudogene ABHD17AP7 2 OTTHUMG00000176510.1 +26912 chr16 HAVANA gene 32739627 32740166 226.0 - 0 ENSG00000261108.2 processed_pseudogene AC138907.4 1 OTTHUMG00000176512.2 pseudo_consens,overlapping_locus +26913 chr16 HAVANA gene 32735909 32741094 866.0 - 0 ENSG00000260845.1 lincRNA AC138907.2 2 OTTHUMG00000176511.1 overlapping_locus +26914 chr16 HAVANA gene 32741314 32776196 6078.0 + 0 ENSG00000260644.6 transcribed_unprocessed_pseudogene HERC2P5 2 OTTHUMG00000176513.3 +26915 chr16 HAVANA gene 32781883 32784138 2256.0 + 0 ENSG00000278950.1 TEC AC138907.8 2 OTTHUMG00000176514.1 +26916 chr16 HAVANA gene 32786394 32787379 986.0 + 0 ENSG00000279780.1 TEC AC138907.9 2 OTTHUMG00000176515.1 +26917 chr16 HAVANA gene 32787962 32788944 983.0 + 0 ENSG00000279795.1 TEC AC138907.10 2 OTTHUMG00000176516.1 +26918 chr16 HAVANA gene 32811029 32811251 223.0 - 0 ENSG00000261719.1 processed_pseudogene AC137761.2 2 OTTHUMG00000176518.1 +26919 chr16 HAVANA gene 32809556 32824645 601.0 + 0 ENSG00000260158.1 lincRNA AC137761.1 2 OTTHUMG00000176517.1 +26920 chr16 HAVANA gene 32845964 32846180 217.0 - 0 ENSG00000259934.1 processed_pseudogene AC142086.2 2 OTTHUMG00000176439.1 +26921 chr16 HAVANA gene 32847713 32848156 358.0 + 0 ENSG00000259303.5 IG_V_gene IGHV2OR16-5 2 OTTHUMG00000152881.5 +26922 chr16 HAVANA gene 32869985 32873128 399.0 + 0 ENSG00000260047.2 unprocessed_pseudogene BCAP31P2 2 OTTHUMG00000176440.2 +26923 chr16 HAVANA gene 32877469 32885501 4479.0 - 0 ENSG00000214617.9 transcribed_unprocessed_pseudogene SLC6A10P 2 OTTHUMG00000132481.3 +26924 chr16 HAVANA gene 32885194 32888874 2274.0 + 0 ENSG00000214614.2 lincRNA AC142086.1 2 OTTHUMG00000176441.1 +26925 chr16 HAVANA gene 32903442 32903894 414.0 + 0 ENSG00000261834.2 IG_V_pseudogene IGHV3OR16-15 2 OTTHUMG00000176442.2 +26926 chr16 HAVANA gene 32915074 32915536 360.0 + 0 ENSG00000270864.1 IG_V_pseudogene IGHV3OR16-6 2 OTTHUMG00000176443.2 +26927 chr16 HAVANA gene 32931768 32932569 802.0 - 0 ENSG00000260610.1 processed_pseudogene AC142086.3 2 OTTHUMG00000176651.1 +26928 chr16 HAVANA gene 32916974 32946392 1765.0 + 0 ENSG00000277304.1 unprocessed_pseudogene AC142086.6 2 OTTHUMG00000187973.1 +26929 chr16 HAVANA gene 32978461 32978891 349.0 + 0 ENSG00000259852.2 IG_V_pseudogene IGHV1OR16-2 2 OTTHUMG00000176445.2 +26930 chr16 HAVANA gene 32995048 32995505 350.0 + 0 ENSG00000233732.5 IG_V_gene IGHV3OR16-10 2 OTTHUMG00000176446.4 +26931 chr16 HAVANA gene 32995537 32996770 650.0 + 0 ENSG00000260921.1 lincRNA AC142086.4 2 OTTHUMG00000176447.1 +26932 chr16 HAVANA gene 33002333 33002621 205.0 + 0 ENSG00000259997.2 IG_V_pseudogene IGHV1OR16-4 2 OTTHUMG00000176448.2 +26933 chr16 HAVANA gene 33009175 33009620 349.0 + 0 ENSG00000271130.1 IG_V_gene IGHV3OR16-8 2 OTTHUMG00000176449.3 +26934 chr16 HAVANA gene 32951993 33028037 702.0 - 0 ENSG00000261259.1 transcribed_processed_pseudogene AC142086.5 2 OTTHUMG00000176444.1 +26935 chr16 HAVANA gene 33059936 33060098 163.0 + 0 ENSG00000260900.1 processed_pseudogene AC145350.3 2 OTTHUMG00000176451.1 +26936 chr16 HAVANA gene 33043609 33095431 1506.0 - 0 ENSG00000260141.1 lincRNA AC145350.2 2 OTTHUMG00000176450.1 overlapping_locus +26937 chr16 HAVANA gene 33094204 33129090 6013.0 - 0 ENSG00000261599.6 transcribed_unprocessed_pseudogene HERC2P8 2 OTTHUMG00000176452.3 overlapping_locus +26938 chr16 HAVANA gene 33130235 33130442 208.0 + 0 ENSG00000259800.1 processed_pseudogene AC145350.1 1 OTTHUMG00000176454.1 pseudo_consens,overlapping_locus +26939 chr16 HAVANA gene 33129316 33134499 866.0 + 0 ENSG00000261682.1 lincRNA AC145350.4 2 OTTHUMG00000176453.1 overlapping_locus +26940 chr16 HAVANA gene 33140850 33143797 548.0 + 0 ENSG00000261536.2 unprocessed_pseudogene ABHD17AP9 2 OTTHUMG00000176455.2 +26941 chr16 HAVANA gene 33154352 33154475 124.0 - 0 ENSG00000260414.1 processed_pseudogene AC138869.1 2 OTTHUMG00000176456.1 +26942 chr16 HAVANA gene 33191561 33195354 262.0 - 0 ENSG00000260419.1 antisense AC138869.2 2 OTTHUMG00000176457.1 +26943 chr16 HAVANA gene 33193659 33196858 2903.0 + 0 ENSG00000205457.11 protein_coding TP53TG3C 2 OTTHUMG00000176458.2 +26944 chr16 HAVANA gene 33203773 33206462 2486.0 - 0 ENSG00000260827.1 lincRNA AC138869.3 2 OTTHUMG00000176459.1 overlapping_locus +26945 chr16 HAVANA gene 33303739 33306935 2527.0 + 0 ENSG00000275034.2 protein_coding TP53TG3E 2 OTTHUMG00000189337.1 +26946 chr16 HAVANA gene 33206431 33330342 540.0 - 0 ENSG00000261507.1 lincRNA AC141257.2 2 OTTHUMG00000176460.1 overlapping_locus +26947 chr16 HAVANA gene 33345182 33345396 215.0 + 0 ENSG00000282973.1 processed_pseudogene AC141257.3 1 OTTHUMG00000177784.2 pseudo_consens +26948 chr16 HAVANA gene 33360274 33363478 2749.0 + 0 ENSG00000261509.6 protein_coding TP53TG3B 2 OTTHUMG00000176461.3 +26949 chr16 HAVANA gene 33370473 33372915 2239.0 - 0 ENSG00000261009.1 lincRNA AC141257.1 2 OTTHUMG00000176462.1 +26950 chr16 HAVANA gene 33386105 33386349 245.0 + 0 ENSG00000283110.1 processed_pseudogene AC141257.4 2 OTTHUMG00000177785.2 +26951 chr16 HAVANA gene 33459045 33462249 2535.0 + 0 ENSG00000278848.2 protein_coding TP53TG3F 2 OTTHUMG00000189349.1 +26952 chr16 HAVANA gene 33484887 33485131 245.0 + 0 ENSG00000282927.1 processed_pseudogene AC136944.6 2 OTTHUMG00000191537.1 +26953 chr16 HAVANA gene 33495943 33496093 151.0 - 0 ENSG00000262090.1 processed_pseudogene AC136944.5 2 OTTHUMG00000177786.1 +26954 chr16 HAVANA gene 33533816 33534976 560.0 - 0 ENSG00000260626.1 lincRNA AC136944.1 2 OTTHUMG00000176464.1 +26955 chr16 HAVANA gene 33541842 33545812 3971.0 - 0 ENSG00000261200.1 lincRNA AC136944.2 2 OTTHUMG00000176465.1 +26956 chr16 HAVANA gene 33548297 33554408 660.0 - 0 ENSG00000261466.2 lincRNA AC136944.4 2 OTTHUMG00000176466.1 +26957 chr16 HAVANA gene 33562649 33570935 893.0 - 0 ENSG00000261405.2 transcribed_unprocessed_pseudogene AC136944.3 2 OTTHUMG00000176467.1 +26958 chr16 HAVANA gene 33577502 33622547 1549.0 + 0 ENSG00000259882.2 unprocessed_pseudogene AC142384.1 2 OTTHUMG00000176351.2 +26959 chr16 HAVANA gene 33687025 33707213 2288.0 - 0 ENSG00000260518.2 transcribed_unprocessed_pseudogene BMS1P8 2 OTTHUMG00000176352.2 +26960 chr16 HAVANA gene 33723356 33763773 1155.0 - 0 ENSG00000282924.1 unprocessed_pseudogene AC136428.4 2 OTTHUMG00000191538.1 +26961 chr16 HAVANA gene 33769421 33769679 259.0 + 0 ENSG00000261580.1 processed_pseudogene ENPP7P13 2 OTTHUMG00000176353.1 +26962 chr16 HAVANA gene 33771035 33771248 214.0 + 0 ENSG00000260308.1 processed_pseudogene AC136428.2 2 OTTHUMG00000176354.1 +26963 chr16 HAVANA gene 33802764 33803217 353.0 + 0 ENSG00000270467.1 IG_V_gene IGHV3OR16-12 2 OTTHUMG00000176355.3 +26964 chr16 HAVANA gene 33808778 33810767 1990.0 + 0 ENSG00000261153.2 processed_pseudogene AC136428.3 1 OTTHUMG00000176356.2 pseudo_consens +26965 chr16 HAVANA gene 33827214 33827661 353.0 + 0 ENSG00000271178.1 IG_V_gene IGHV3OR16-13 2 OTTHUMG00000176357.3 +26966 chr16 HAVANA gene 33844784 33845229 349.0 - 0 ENSG00000259680.5 protein_coding AC136428.1 2 OTTHUMG00000176363.4 +26967 chr16 HAVANA gene 33848476 33848644 169.0 - 0 ENSG00000270924.1 unprocessed_pseudogene AC140658.6 2 OTTHUMG00000184744.1 +26968 chr16 HAVANA gene 33851785 33852069 201.0 - 0 ENSG00000271691.1 unprocessed_pseudogene AC140658.7 2 OTTHUMG00000184743.1 +26969 chr16 HAVANA gene 33857935 33858864 346.0 - 0 ENSG00000260312.1 lincRNA AC140658.2 2 OTTHUMG00000176361.1 +26970 chr16 HAVANA gene 33858896 33859352 349.0 - 0 ENSG00000270318.1 IG_V_pseudogene IGHV3OR16-11 2 OTTHUMG00000184731.1 +26971 chr16 HAVANA gene 33875039 33875468 348.0 - 0 ENSG00000260525.1 unprocessed_pseudogene AC140658.3 2 OTTHUMG00000176359.1 +26972 chr16 HAVANA gene 33907419 33937167 2080.0 - 0 ENSG00000260781.1 transcribed_unprocessed_pseudogene ARHGAP23P1 2 OTTHUMG00000176364.1 +26973 chr16 HAVANA gene 33938337 33938799 360.0 - 0 ENSG00000271620.1 IG_V_pseudogene IGHV3OR16-7 2 OTTHUMG00000184739.1 +26974 chr16 HAVANA gene 33948278 33948548 271.0 - 0 ENSG00000261607.1 unprocessed_pseudogene AC140658.4 2 OTTHUMG00000176366.1 +26975 chr16 HAVANA gene 33949976 33950420 343.0 - 0 ENSG00000259842.2 unprocessed_pseudogene IGHV3OR16-16 2 OTTHUMG00000176367.2 +26976 chr16 HAVANA gene 33965655 33966091 352.0 - 0 ENSG00000270401.1 unprocessed_pseudogene AC140658.5 2 OTTHUMG00000176368.3 overlapping_locus +26977 chr16 HAVANA gene 33964547 33976346 2586.0 - 0 ENSG00000205452.5 processed_transcript AC140658.1 2 OTTHUMG00000185250.2 overlapping_locus +26978 chr16 HAVANA gene 33976039 33987630 2415.0 + 0 ENSG00000198555.7 unprocessed_pseudogene AC133561.1 2 OTTHUMG00000176371.1 +26979 chr16 HAVANA gene 33988406 33991551 385.0 - 0 ENSG00000261217.2 unprocessed_pseudogene BCAP31P1 2 OTTHUMG00000176372.2 +26980 chr16 HAVANA gene 34013394 34013830 351.0 - 0 ENSG00000259990.2 unprocessed_pseudogene AC133561.2 2 OTTHUMG00000176373.2 +26981 chr16 HAVANA gene 34015260 34015477 218.0 + 0 ENSG00000283065.1 processed_pseudogene AC133561.4 2 OTTHUMG00000191539.1 +26982 chr16 HAVANA gene 34051140 34051363 224.0 + 0 ENSG00000261197.2 processed_pseudogene AC133561.3 2 OTTHUMG00000176374.2 +26983 chr16 HAVANA gene 34120470 34120677 208.0 + 0 ENSG00000262561.1 processed_pseudogene AC136932.1 2 OTTHUMG00000177792.1 +26984 chr16 HAVANA gene 34135736 34136792 1057.0 - 0 ENSG00000261440.1 processed_pseudogene DUX4L45 1 OTTHUMG00000176375.1 pseudo_consens +26985 chr16 HAVANA gene 34139189 34139543 355.0 + 0 ENSG00000260087.1 processed_pseudogene PCMTD1P2 2 OTTHUMG00000176376.1 +26986 chr16 HAVANA gene 34141256 34142006 751.0 - 0 ENSG00000259987.1 processed_pseudogene DUX4L46 2 OTTHUMG00000176377.1 +26987 chr16 HAVANA gene 34142456 34142849 394.0 + 0 ENSG00000260207.1 processed_pseudogene DUX4L47 2 OTTHUMG00000176378.1 +26988 chr16 HAVANA gene 34158585 34160036 1452.0 - 0 ENSG00000256642.1 lincRNA LINC00273 2 OTTHUMG00000176379.1 +26989 chr16 ENSEMBL gene 34162959 34163110 152.0 + 0 ENSG00000200434.1 rRNA_pseudogene RNA5-8SP2 3 +26990 chr16 HAVANA gene 34266041 34268649 2609.0 - 0 ENSG00000279800.2 processed_pseudogene BCLAF1P2 1 OTTHUMG00000191386.1 pseudo_consens +26991 chr16 HAVANA gene 34353616 34371659 703.0 - 0 ENSG00000284209.1 unprocessed_pseudogene FP325313.1 2 OTTHUMG00000192001.1 +26992 chr16 HAVANA gene 34941977 34943880 1904.0 + 0 ENSG00000279165.1 TEC AC135776.4 2 OTTHUMG00000176220.1 +26993 chr16 HAVANA gene 34978744 34979844 552.0 - 0 ENSG00000260854.1 lincRNA LINC02184 2 OTTHUMG00000176221.1 +26994 chr16 HAVANA gene 35023339 35023765 427.0 + 0 ENSG00000262885.1 processed_pseudogene AC135776.3 2 OTTHUMG00000177793.1 overlapping_locus +26995 chr16 HAVANA gene 35021749 35024229 2481.0 + 0 ENSG00000179755.3 lincRNA AC135776.1 2 OTTHUMG00000176223.2 overlapping_locus +26996 chr16 HAVANA gene 35022851 35024250 714.0 - 0 ENSG00000261566.1 lincRNA AC135776.2 2 OTTHUMG00000176224.1 +26997 chr16 HAVANA gene 35040164 35084313 998.0 + 0 ENSG00000216671.6 unprocessed_pseudogene CCNYL3 2 OTTHUMG00000187976.1 +26998 chr16 HAVANA gene 35068211 35085060 1026.0 + 0 ENSG00000278138.2 unprocessed_pseudogene CLUHP11 2 OTTHUMG00000187977.2 +26999 chr16 HAVANA gene 35085896 35086119 224.0 + 0 ENSG00000261053.1 processed_pseudogene NAMPTP3 1 OTTHUMG00000176226.1 pseudo_consens +27000 chr16 HAVANA gene 35090501 35104834 1518.0 + 0 ENSG00000260809.1 unprocessed_pseudogene VPS35P1 2 OTTHUMG00000176657.1 +27001 chr16 HAVANA gene 35118238 35118956 719.0 - 0 ENSG00000259979.1 processed_pseudogene VN1R68P 2 OTTHUMG00000176228.1 +27002 chr16 HAVANA gene 35134514 35135075 562.0 + 0 ENSG00000260724.1 processed_pseudogene VN1R69P 2 OTTHUMG00000176229.1 +27003 chr16 HAVANA gene 35143722 35144881 703.0 + 0 ENSG00000261800.1 lincRNA AC023824.5 2 OTTHUMG00000176231.1 +27004 chr16 HAVANA gene 35148636 35154366 5731.0 + 0 ENSG00000280180.1 TEC AC023824.6 2 OTTHUMG00000176233.1 +27005 chr16 HAVANA gene 35169692 35170241 550.0 - 0 ENSG00000261461.1 processed_pseudogene UBE2MP1 1 OTTHUMG00000176235.1 pseudo_consens +27006 chr16 HAVANA gene 35173316 35174093 778.0 + 0 ENSG00000261608.1 processed_pseudogene SLC25A1P4 1 OTTHUMG00000176236.1 pseudo_consens +27007 chr16 HAVANA gene 35193335 35193734 400.0 + 0 ENSG00000260590.1 processed_pseudogene AC023824.2 2 OTTHUMG00000176238.1 +27008 chr16 HAVANA gene 35192687 35195661 2975.0 - 0 ENSG00000260073.2 lincRNA AC023824.1 2 OTTHUMG00000176237.2 +27009 chr16 HAVANA gene 35195779 35197544 1766.0 + 0 ENSG00000261398.1 lincRNA AC023824.4 2 OTTHUMG00000176239.1 +27010 chr16 HAVANA gene 35207903 35208236 334.0 - 0 ENSG00000261274.1 processed_pseudogene TP53TG3GP 2 OTTHUMG00000176240.1 +27011 chr16 HAVANA gene 35221583 35222048 466.0 - 0 ENSG00000260967.1 processed_pseudogene RARRES2P5 1 OTTHUMG00000176242.1 pseudo_consens +27012 chr16 HAVANA gene 35232412 35235984 886.0 - 0 ENSG00000260984.1 unprocessed_pseudogene FGFR3P5 2 OTTHUMG00000176658.1 +27013 chr16 HAVANA gene 35245916 35247534 832.0 - 0 ENSG00000259897.2 unprocessed_pseudogene FRG2JP 2 OTTHUMG00000176243.2 +27014 chr16 HAVANA gene 35255192 35255633 442.0 - 0 ENSG00000261010.1 processed_pseudogene RARRES2P6 1 OTTHUMG00000176244.1 pseudo_consens +27015 chr16 HAVANA gene 35258630 35259629 1000.0 + 0 ENSG00000261752.1 processed_pseudogene AGGF1P8 1 OTTHUMG00000176245.1 pseudo_consens,overlapping_locus +27016 chr16 HAVANA gene 35207937 35284146 1262.0 + 0 ENSG00000260958.2 lincRNA AC023824.3 2 OTTHUMG00000176241.2 overlapping_locus +27017 chr16 HAVANA gene 35335277 35336889 832.0 - 0 ENSG00000260846.2 unprocessed_pseudogene FRG2HP 2 OTTHUMG00000176246.2 +27018 chr16 HAVANA gene 35344091 35344559 469.0 - 0 ENSG00000261486.1 processed_pseudogene RARRES2P9 1 OTTHUMG00000176247.1 pseudo_consens +27019 chr16 HAVANA gene 35347385 35348297 913.0 + 0 ENSG00000260427.1 processed_pseudogene AGGF1P9 1 OTTHUMG00000176248.1 pseudo_consens +27020 chr16 HAVANA gene 35352482 35353022 541.0 + 0 ENSG00000260480.1 processed_pseudogene C2orf69P4 1 OTTHUMG00000176249.1 pseudo_consens +27021 chr16 HAVANA gene 35384144 35385086 615.0 - 0 ENSG00000260291.1 unprocessed_pseudogene FRG2GP 1 OTTHUMG00000176251.1 pseudo_consens +27022 chr16 HAVANA gene 35389203 35390003 801.0 - 0 ENSG00000261689.1 processed_pseudogene AGGF1P4 1 OTTHUMG00000176252.1 pseudo_consens +27023 chr16 HAVANA gene 35363412 35390584 2961.0 + 0 ENSG00000259841.6 lincRNA LINC01566 2 OTTHUMG00000176250.2 +27024 chr16 HAVANA gene 35405747 35407349 781.0 - 0 ENSG00000260598.1 unprocessed_pseudogene FRG2IP 2 OTTHUMG00000175999.1 +27025 chr16 HAVANA gene 35414279 35414747 469.0 - 0 ENSG00000260812.1 processed_pseudogene RARRES2P7 1 OTTHUMG00000176000.1 pseudo_consens +27026 chr16 HAVANA gene 35420291 35421209 919.0 + 0 ENSG00000260680.1 processed_pseudogene AGGF1P5 1 OTTHUMG00000176001.1 pseudo_consens +27027 chr16 HAVANA gene 35425364 35426483 1120.0 + 0 ENSG00000261299.1 processed_pseudogene C2orf69P3 1 OTTHUMG00000176002.1 pseudo_consens +27028 chr16 HAVANA gene 35435303 35436341 281.0 - 0 ENSG00000278681.2 unprocessed_pseudogene AC018558.4 2 OTTHUMG00000187978.2 +27029 chr16 HAVANA gene 35446898 35449411 1539.0 - 0 ENSG00000214581.6 transcribed_processed_pseudogene ZNF971P 2 OTTHUMG00000176003.3 +27030 chr16 HAVANA gene 35477414 35480481 1850.0 - 0 ENSG00000261711.6 transcribed_unprocessed_pseudogene FRG2DP 2 OTTHUMG00000176004.3 +27031 chr16 HAVANA gene 35485766 35486225 460.0 - 0 ENSG00000260153.1 processed_pseudogene RARRES2P10 1 OTTHUMG00000176005.1 pseudo_consens +27032 chr16 HAVANA gene 35489237 35490212 976.0 + 0 ENSG00000259836.1 processed_pseudogene AGGF1P6 1 OTTHUMG00000176006.1 pseudo_consens +27033 chr16 HAVANA gene 35491174 35492395 480.0 - 0 ENSG00000261350.1 lincRNA AC018558.2 2 OTTHUMG00000176007.1 +27034 chr16 HAVANA gene 35492324 35493446 1123.0 + 0 ENSG00000260341.1 processed_pseudogene C2orf69P2 1 OTTHUMG00000176008.1 pseudo_consens +27035 chr16 HAVANA gene 35493754 35496457 572.0 - 0 ENSG00000261445.1 lincRNA AC018558.3 2 OTTHUMG00000176009.1 +27036 chr16 HAVANA gene 35505093 35506462 459.0 - 0 ENSG00000260857.2 lincRNA AC018558.1 2 OTTHUMG00000183202.1 +27037 chr16 HAVANA gene 35506592 35507170 579.0 - 0 ENSG00000269622.1 transcribed_processed_pseudogene TP53TG3HP 2 OTTHUMG00000176011.2 +27038 chr16 HAVANA gene 35528367 35529318 952.0 - 0 ENSG00000282946.1 processed_pseudogene AC018558.5 2 OTTHUMG00000176012.2 +27039 chr16 HAVANA gene 35543279 35543645 367.0 - 0 ENSG00000259996.1 processed_pseudogene RARRES2P8 1 OTTHUMG00000176013.1 pseudo_consens +27040 chr16 HAVANA gene 35547917 35548829 913.0 + 0 ENSG00000260994.1 processed_pseudogene AGGF1P7 1 OTTHUMG00000176014.1 pseudo_consens +27041 chr16 HAVANA gene 35552909 35554001 1093.0 + 0 ENSG00000261046.1 processed_pseudogene C2orf69P1 1 OTTHUMG00000176015.1 pseudo_consens +27042 chr16 HAVANA gene 35574834 35575494 661.0 + 0 ENSG00000260134.1 processed_pseudogene C1QL1P1 2 OTTHUMG00000176017.1 +27043 chr16 HAVANA gene 35640029 35640582 554.0 + 0 ENSG00000259791.1 lincRNA AC092325.1 2 OTTHUMG00000176019.1 +27044 chr16 HAVANA gene 35636687 35645180 2264.0 - 0 ENSG00000260746.2 unprocessed_pseudogene KIF18BP1 2 OTTHUMG00000176018.2 +27045 chr16 HAVANA gene 35722268 35722529 262.0 - 0 ENSG00000260522.1 processed_pseudogene AC106785.1 2 OTTHUMG00000176020.1 +27046 chr16 ENSEMBL gene 35734393 35734504 112.0 + 0 ENSG00000251915.1 rRNA_pseudogene RNA5SP406 3 +27047 chr16 ENSEMBL gene 35734639 35734748 110.0 + 0 ENSG00000222207.1 rRNA_pseudogene RNA5SP407 3 +27048 chr16 ENSEMBL gene 35735372 35735471 100.0 + 0 ENSG00000251924.1 rRNA_pseudogene RNA5SP408 3 +27049 chr16 ENSEMBL gene 35735625 35735733 109.0 + 0 ENSG00000252624.1 rRNA_pseudogene RNA5SP409 3 +27050 chr16 ENSEMBL gene 35745989 35746094 106.0 + 0 ENSG00000252094.1 rRNA_pseudogene RNA5SP410 3 +27051 chr16 ENSEMBL gene 35746523 35746636 114.0 + 0 ENSG00000276599.1 rRNA_pseudogene RNA5SP411 3 +27052 chr16 ENSEMBL gene 35746772 35746894 123.0 + 0 ENSG00000277004.1 rRNA_pseudogene RNA5SP412 3 +27053 chr16 ENSEMBL gene 35747032 35747140 109.0 + 0 ENSG00000252182.1 rRNA_pseudogene RNA5SP413 3 +27054 chr16 ENSEMBL gene 35748520 35748655 136.0 + 0 ENSG00000274228.1 rRNA_pseudogene RNA5SP414 3 +27055 chr16 ENSEMBL gene 35750061 35750175 115.0 + 0 ENSG00000253055.1 rRNA_pseudogene RNA5SP415 3 +27056 chr16 ENSEMBL gene 35751574 35751684 111.0 + 0 ENSG00000252647.1 rRNA_pseudogene RNA5SP416 3 +27057 chr16 ENSEMBL gene 35751828 35751935 108.0 + 0 ENSG00000252268.1 rRNA_pseudogene RNA5SP417 3 +27058 chr16 ENSEMBL gene 35752826 35752942 117.0 + 0 ENSG00000251760.1 rRNA_pseudogene RNA5SP418 3 +27059 chr16 ENSEMBL gene 35753796 35753930 135.0 + 0 ENSG00000251717.1 rRNA_pseudogene RNA5SP419 3 +27060 chr16 ENSEMBL gene 35754046 35754182 137.0 + 0 ENSG00000252806.1 rRNA_pseudogene RNA5SP420 3 +27061 chr16 ENSEMBL gene 35754555 35754688 134.0 + 0 ENSG00000252673.1 rRNA_pseudogene RNA5SP421 3 +27062 chr16 ENSEMBL gene 35754923 35755033 111.0 + 0 ENSG00000252587.1 rRNA_pseudogene RNA5SP422 3 +27063 chr16 ENSEMBL gene 35755177 35755285 109.0 + 0 ENSG00000252936.1 rRNA_pseudogene RNA5SP423 3 +27064 chr16 HAVANA gene 35743268 35756515 1989.0 + 0 ENSG00000261122.6 lincRNA LINC02167 2 OTTHUMG00000176021.1 +27065 chr16 HAVANA gene 35785569 35786887 1319.0 - 0 ENSG00000260611.1 lincRNA AC106785.2 2 OTTHUMG00000176022.1 +27066 chr16 HAVANA gene 35802869 35803280 412.0 - 0 ENSG00000261620.1 processed_pseudogene HMGN2P41 2 OTTHUMG00000176023.1 +27067 chr16 HAVANA gene 35836886 35837732 847.0 + 0 ENSG00000261515.1 processed_pseudogene VN1R70P 2 OTTHUMG00000176024.1 +27068 chr16 HAVANA gene 35879036 35879498 463.0 - 0 ENSG00000261782.1 processed_pseudogene AC116553.1 1 OTTHUMG00000176025.1 pseudo_consens +27069 chr16 HAVANA gene 35903117 35904916 1800.0 + 0 ENSG00000279666.1 TEC AC116553.2 2 OTTHUMG00000176026.1 +27070 chr16 HAVANA gene 35912120 35912516 397.0 + 0 ENSG00000261084.1 processed_pseudogene PPP1R1AP2 1 OTTHUMG00000176027.1 pseudo_consens +27071 chr16 ENSEMBL gene 46556089 46556191 103.0 - 0 ENSG00000199448.1 snRNA RNU6-845P 3 +27072 chr16 HAVANA gene 46469341 46569097 6411.0 - 0 ENSG00000261239.6 transcribed_unprocessed_pseudogene ANKRD26P1 2 OTTHUMG00000175593.3 +27073 chr16 HAVANA gene 46571537 46572136 600.0 + 0 ENSG00000261356.2 processed_pseudogene AC092368.2 1 OTTHUMG00000175594.3 pseudo_consens +27074 chr16 HAVANA gene 46573763 46575094 733.0 + 0 ENSG00000260251.1 unprocessed_pseudogene AC092368.1 2 OTTHUMG00000175595.1 +27075 chr16 HAVANA gene 46580554 46621626 4459.0 - 0 ENSG00000171241.8 protein_coding SHCBP1 1 OTTHUMG00000132540.4 +27076 chr16 HAVANA gene 46622861 46624451 1591.0 - 0 ENSG00000261512.2 lincRNA AC092368.3 2 OTTHUMG00000175597.2 +27077 chr16 HAVANA gene 46626404 46626992 589.0 - 0 ENSG00000259856.1 processed_pseudogene RAB43P1 1 OTTHUMG00000175598.2 pseudo_consens +27078 chr16 HAVANA gene 46649126 46649849 398.0 + 0 ENSG00000260909.1 unprocessed_pseudogene AC012186.1 1 OTTHUMG00000175599.1 pseudo_consens +27079 chr16 HAVANA gene 46660696 46661591 321.0 - 0 ENSG00000261131.1 sense_intronic AC012186.2 2 OTTHUMG00000175600.1 overlapping_locus +27080 chr16 HAVANA gene 46673443 46673927 485.0 - 0 ENSG00000280376.1 TEC AC012186.3 2 OTTHUMG00000177887.1 overlapping_locus +27081 chr16 HAVANA gene 46656132 46689518 9733.0 - 0 ENSG00000069329.17 protein_coding VPS35 1 OTTHUMG00000132542.7 overlapping_locus +27082 chr16 HAVANA gene 46689643 46698394 4309.0 + 0 ENSG00000091651.8 protein_coding ORC6 2 OTTHUMG00000132539.4 +27083 chr16 HAVANA gene 46703369 46790407 9522.0 - 0 ENSG00000140795.12 protein_coding MYLK3 1 OTTHUMG00000132543.5 +27084 chr16 HAVANA gene 46789898 46792040 1836.0 + 0 ENSG00000260782.1 processed_pseudogene AC007225.1 1 OTTHUMG00000175602.1 pseudo_consens +27085 chr16 HAVANA gene 46796607 46831411 7443.0 - 0 ENSG00000155330.9 protein_coding C16orf87 1 OTTHUMG00000132538.2 +27086 chr16 HAVANA gene 46842632 46844618 1086.0 - 0 ENSG00000260889.1 processed_pseudogene CKBP1 1 OTTHUMG00000175603.1 pseudo_consens +27087 chr16 HAVANA gene 46850999 46851254 256.0 + 0 ENSG00000261725.1 processed_pseudogene AC007225.2 1 OTTHUMG00000175604.1 pseudo_consens +27088 chr16 HAVANA gene 46884378 46931297 6354.0 + 0 ENSG00000166123.13 protein_coding GPT2 2 OTTHUMG00000132541.4 +27089 chr16 HAVANA gene 46955362 46973788 5065.0 - 0 ENSG00000069345.11 protein_coding DNAJA2 2 OTTHUMG00000133104.8 +27090 chr16 HAVANA gene 46973989 46978983 516.0 + 0 ENSG00000261173.1 antisense AC018845.3 2 OTTHUMG00000175605.1 +27091 chr16 HAVANA gene 47013957 47014365 409.0 + 0 ENSG00000259983.1 transcribed_processed_pseudogene AC018845.2 1 OTTHUMG00000175608.1 pseudo_consens,overlapping_locus +27092 chr16 HAVANA gene 47004513 47035385 744.0 + 0 ENSG00000259821.1 lincRNA AC018845.1 2 OTTHUMG00000175607.1 overlapping_locus +27093 chr16 HAVANA gene 47077703 47143997 7481.0 - 0 ENSG00000171208.9 protein_coding NETO2 1 OTTHUMG00000133101.4 +27094 chr16 HAVANA gene 47150132 47150566 435.0 - 0 ENSG00000239840.1 processed_pseudogene RPL23AP72 1 OTTHUMG00000158136.1 pseudo_consens +27095 chr16 HAVANA gene 47144323 47162747 626.0 + 0 ENSG00000260281.5 antisense ITFG1-AS1 2 OTTHUMG00000175527.1 +27096 chr16 HAVANA gene 47196311 47202429 764.0 + 0 ENSG00000260744.1 antisense AC007494.2 2 OTTHUMG00000175528.1 +27097 chr16 HAVANA gene 47218026 47218768 743.0 + 0 ENSG00000279509.1 TEC AC007494.3 2 OTTHUMG00000177890.1 +27098 chr16 HAVANA gene 47262741 47263500 760.0 + 0 ENSG00000260012.1 processed_pseudogene AC007494.1 1 OTTHUMG00000175529.1 pseudo_consens +27099 chr16 ENSEMBL gene 47313027 47313121 95.0 - 0 ENSG00000222767.1 misc_RNA RF00019 3 +27100 chr16 HAVANA gene 47299447 47317814 870.0 + 0 ENSG00000261369.1 antisense AC007533.1 2 OTTHUMG00000175530.1 +27101 chr16 HAVANA gene 47154387 47464149 7770.0 - 0 ENSG00000129636.12 protein_coding ITFG1 1 OTTHUMG00000133103.5 ncRNA_host +27102 chr16 ENSEMBL gene 47505432 47505543 112.0 + 0 ENSG00000222268.1 rRNA_pseudogene RNA5SP425 3 +27103 chr16 HAVANA gene 47529190 47529916 493.0 + 0 ENSG00000262038.1 sense_intronic AC007599.2 2 OTTHUMG00000177891.1 overlapping_locus +27104 chr16 HAVANA gene 47561307 47562480 1174.0 - 0 ENSG00000259866.1 processed_pseudogene AC007599.1 1 OTTHUMG00000175531.1 pseudo_consens +27105 chr16 HAVANA gene 47565090 47566884 1795.0 - 0 ENSG00000261336.1 processed_pseudogene EIF4BP5 1 OTTHUMG00000175532.1 pseudo_consens +27106 chr16 HAVANA gene 47598654 47598996 343.0 - 0 ENSG00000259918.1 processed_pseudogene NDUFA5P11 1 OTTHUMG00000175533.1 pseudo_consens +27107 chr16 HAVANA gene 47461123 47701523 11822.0 + 0 ENSG00000102893.15 protein_coding PHKB 1 OTTHUMG00000133102.5 overlapping_locus +27108 chr16 HAVANA gene 47760780 47760921 142.0 - 0 ENSG00000260497.1 processed_pseudogene AC141846.1 2 OTTHUMG00000175448.1 +27109 chr16 HAVANA gene 47849314 47887130 1325.0 - 0 ENSG00000261325.1 lincRNA LINC02192 2 OTTHUMG00000175449.1 +27110 chr16 HAVANA gene 47724568 47908431 3019.0 + 0 ENSG00000261231.6 lincRNA LINC02133 2 OTTHUMG00000175450.1 +27111 chr16 HAVANA gene 47965672 47971687 557.0 + 0 ENSG00000260450.1 lincRNA LINC02134 2 OTTHUMG00000175451.1 +27112 chr16 HAVANA gene 48059671 48059995 325.0 - 0 ENSG00000261017.1 processed_pseudogene AC096996.1 2 OTTHUMG00000175440.1 +27113 chr16 HAVANA gene 48081006 48156018 8699.0 - 0 ENSG00000140798.16 protein_coding ABCC12 2 OTTHUMG00000133143.5 +27114 chr16 HAVANA gene 48164952 48167238 426.0 - 0 ENSG00000261538.1 sense_overlapping AC096996.2 2 OTTHUMG00000175441.1 overlapping_locus +27115 chr16 HAVANA gene 48166910 48247568 7245.0 - 0 ENSG00000121270.15 protein_coding ABCC11 2 OTTHUMG00000133146.4 overlapping_locus +27116 chr16 HAVANA gene 48334471 48334854 384.0 - 0 ENSG00000240793.1 processed_pseudogene UBA52P8 1 OTTHUMG00000158140.1 pseudo_consens +27117 chr16 HAVANA gene 48343755 48346058 2304.0 - 0 ENSG00000280067.1 TEC AC023818.1 2 OTTHUMG00000175416.1 +27118 chr16 HAVANA gene 48244296 48363122 9957.0 + 0 ENSG00000102910.13 protein_coding LONP2 1 OTTHUMG00000133144.7 +27119 chr16 ENSEMBL gene 48432927 48433208 282.0 - 0 ENSG00000275909.1 misc_RNA RF00017 3 +27120 chr16 HAVANA gene 48447904 48448398 308.0 - 0 ENSG00000261802.1 sense_overlapping AC026470.3 2 OTTHUMG00000175418.1 overlapping_locus +27121 chr16 HAVANA gene 48356364 48448402 6725.0 - 0 ENSG00000196470.11 protein_coding SIAH1 1 OTTHUMG00000175417.15 ncRNA_host,overlapping_locus +27122 chr16 HAVANA gene 48470953 48471133 181.0 - 0 ENSG00000260688.1 processed_pseudogene AC026470.1 1 OTTHUMG00000175419.1 pseudo_consens +27123 chr16 HAVANA gene 48496990 48498601 1612.0 + 0 ENSG00000260347.1 processed_pseudogene MOCS1P1 1 OTTHUMG00000175420.1 pseudo_consens +27124 chr16 HAVANA gene 48577524 48578369 846.0 - 0 ENSG00000243609.1 processed_pseudogene RPS2P44 1 OTTHUMG00000175442.1 pseudo_consens,overlapping_locus +27125 chr16 HAVANA gene 48559661 48587403 438.0 + 0 ENSG00000261267.1 antisense AC026470.2 2 OTTHUMG00000175422.1 +27126 chr16 HAVANA gene 48600176 48600644 469.0 + 0 ENSG00000260033.1 processed_pseudogene AC023813.2 1 OTTHUMG00000173495.1 pseudo_consens +27127 chr16 HAVANA gene 48538726 48620148 7839.0 - 0 ENSG00000102921.7 protein_coding N4BP1 2 OTTHUMG00000175421.4 overlapping_locus +27128 chr16 HAVANA gene 48620319 48622033 306.0 + 0 ENSG00000259912.1 lincRNA AC023813.1 2 OTTHUMG00000174454.1 +27129 chr16 HAVANA gene 48637143 48638719 539.0 + 0 ENSG00000260052.1 lincRNA AC023813.3 2 OTTHUMG00000174456.1 overlapping_locus +27130 chr16 HAVANA gene 48640473 48641052 580.0 + 0 ENSG00000272545.1 lincRNA AC023813.4 2 OTTHUMG00000185451.1 overlapping_locus +27131 chr16 HAVANA gene 48718083 48719143 1061.0 + 0 ENSG00000260726.2 processed_pseudogene KLF8P1 2 OTTHUMG00000174457.2 overlapping_locus +27132 chr16 ENSEMBL gene 48731704 48731801 98.0 - 0 ENSG00000222170.1 snRNA RNU6-257P 3 +27133 chr16 HAVANA gene 48623436 48744921 1921.0 + 0 ENSG00000260086.2 lincRNA AC007611.1 2 OTTHUMG00000174455.2 overlapping_locus +27134 chr16 HAVANA gene 48849919 48850015 97.0 - 0 ENSG00000260184.1 processed_pseudogene AC023827.1 2 OTTHUMG00000174458.1 +27135 chr16 HAVANA gene 49066567 49066729 163.0 - 0 ENSG00000260067.1 processed_pseudogene MTND4LP25 2 OTTHUMG00000176681.1 +27136 chr16 HAVANA gene 49159508 49162023 418.0 + 0 ENSG00000261421.1 lincRNA AC044798.1 2 OTTHUMG00000173480.1 +27137 chr16 HAVANA gene 49170552 49171786 1235.0 + 0 ENSG00000261815.1 lincRNA AC044798.2 2 OTTHUMG00000173481.1 +27138 chr16 HAVANA gene 49277917 49281831 2594.0 - 0 ENSG00000102924.11 protein_coding CBLN1 2 OTTHUMG00000133148.4 +27139 chr16 HAVANA gene 49297143 49299762 2620.0 + 0 ENSG00000280189.1 TEC AC007614.2 2 OTTHUMG00000173484.2 +27140 chr16 HAVANA gene 49282037 49350504 12190.0 + 0 ENSG00000279249.2 antisense AC007614.1 2 OTTHUMG00000173483.2 +27141 chr16 HAVANA gene 49373823 49399431 1068.0 + 0 ENSG00000166152.3 protein_coding C16orf78 2 OTTHUMG00000133149.1 +27142 chr16 HAVANA gene 49442910 49454078 674.0 - 0 ENSG00000262950.1 lincRNA AC007861.1 2 OTTHUMG00000173488.1 +27143 chr16 HAVANA gene 49454229 49457269 571.0 + 0 ENSG00000263110.1 lincRNA AC007861.2 2 OTTHUMG00000173489.1 +27144 chr16 HAVANA gene 49466106 49469875 3673.0 + 0 ENSG00000261623.1 lincRNA LINC02179 2 OTTHUMG00000173490.2 +27145 chr16 HAVANA gene 49517762 49518601 840.0 - 0 ENSG00000260089.2 processed_pseudogene ADAM3B 1 OTTHUMG00000173492.2 pseudo_consens,overlapping_locus +27146 chr16 HAVANA gene 49708006 49708243 238.0 + 0 ENSG00000260024.1 processed_pseudogene MRPS21P7 1 OTTHUMG00000173442.1 pseudo_consens +27147 chr16 HAVANA gene 49711273 49711914 642.0 + 0 ENSG00000280131.1 TEC AC027348.2 2 OTTHUMG00000173443.1 +27148 chr16 HAVANA gene 49764454 49764688 235.0 + 0 ENSG00000259978.1 processed_pseudogene MRPS21P8 1 OTTHUMG00000173444.1 pseudo_consens +27149 chr16 HAVANA gene 49847018 49847632 615.0 - 0 ENSG00000275155.1 sense_intronic AC027348.1 2 OTTHUMG00000186926.1 overlapping_locus +27150 chr16 HAVANA gene 49487524 49857919 8997.0 - 0 ENSG00000102935.11 protein_coding ZNF423 2 OTTHUMG00000173491.4 overlapping_locus +27151 chr16 HAVANA gene 49900019 49900524 506.0 + 0 ENSG00000279842.1 TEC AC007603.2 2 OTTHUMG00000173445.1 +27152 chr16 HAVANA gene 49920730 49924154 2085.0 - 0 ENSG00000261751.1 lincRNA AC007603.1 2 OTTHUMG00000173446.1 +27153 chr16 HAVANA gene 49935028 49935352 325.0 + 0 ENSG00000244551.2 processed_pseudogene RPL34P29 1 OTTHUMG00000173493.1 pseudo_consens +27154 chr16 HAVANA gene 49954985 49968730 979.0 - 0 ENSG00000283365.1 unitary_pseudogene AC007603.3 2 OTTHUMG00000191796.1 +27155 chr16 HAVANA gene 50024410 50037088 4178.0 + 0 ENSG00000205423.11 protein_coding CNEP1R1 2 OTTHUMG00000173447.1 +27156 chr16 HAVANA gene 50046496 50047798 934.0 + 0 ENSG00000261835.1 unprocessed_pseudogene AC007610.3 1 OTTHUMG00000173449.1 pseudo_consens +27157 chr16 ENSEMBL gene 50054143 50054430 288.0 + 0 ENSG00000273829.1 misc_RNA RF00017 3 +27158 chr16 HAVANA gene 50058150 50059231 1082.0 - 0 ENSG00000260298.2 transcribed_processed_pseudogene ACTG1P16 1 OTTHUMG00000173450.2 pseudo_consens,overlapping_locus +27159 chr16 HAVANA gene 50046429 50066224 498.0 - 0 ENSG00000259843.2 antisense AC007610.1 2 OTTHUMG00000173448.2 overlapping_locus +27160 chr16 HAVANA gene 50072862 50074986 2125.0 + 0 ENSG00000279356.1 TEC AC007610.4 2 OTTHUMG00000177901.1 overlapping_locus +27161 chr16 ENSEMBL gene 50098264 50098358 95.0 + 0 ENSG00000202124.1 misc_RNA RNY4P3 3 +27162 chr16 HAVANA gene 50065941 50106387 4183.0 + 0 ENSG00000155393.12 protein_coding HEATR3 2 OTTHUMG00000133174.3 ncRNA_host,overlapping_locus +27163 chr16 HAVANA gene 50100339 50121943 666.0 - 0 ENSG00000260381.2 antisense AC007610.2 2 OTTHUMG00000173451.1 +27164 chr16 HAVANA gene 50151280 50151577 298.0 - 0 ENSG00000260031.1 processed_pseudogene RPL10P14 2 OTTHUMG00000158143.2 +27165 chr16 ENSEMBL gene 50151642 50151731 90.0 - 0 ENSG00000252526.1 snoRNA RF00156 3 +27166 chr16 HAVANA gene 50152918 50235310 8144.0 + 0 ENSG00000121274.12 protein_coding TENT4B 1 OTTHUMG00000173452.4 +27167 chr16 ENSEMBL gene 50292616 50292675 60.0 + 0 ENSG00000274969.1 miRNA MIR6771 3 +27168 chr16 HAVANA gene 50246137 50318135 8630.0 + 0 ENSG00000121281.12 protein_coding ADCY7 2 OTTHUMG00000133172.6 ncRNA_host +27169 chr16 HAVANA gene 50313487 50368934 8492.0 - 0 ENSG00000166164.15 protein_coding BRD7 2 OTTHUMG00000133170.4 +27170 chr16 HAVANA gene 50368580 50371480 478.0 + 0 ENSG00000261393.1 antisense AC007493.2 2 OTTHUMG00000173392.1 +27171 chr16 HAVANA gene 50390916 50395133 425.0 - 0 ENSG00000261092.1 lincRNA LINC02178 2 OTTHUMG00000173393.1 +27172 chr16 HAVANA gene 50407666 50546347 3865.0 + 0 ENSG00000260573.3 lincRNA AC007493.1 2 OTTHUMG00000173394.3 +27173 chr16 HAVANA gene 50551824 50553940 1146.0 - 0 ENSG00000260029.2 antisense AC007608.2 2 OTTHUMG00000173396.2 +27174 chr16 HAVANA gene 50555355 50558719 3365.0 + 0 ENSG00000278909.1 TEC AC007608.4 2 OTTHUMG00000173397.1 overlapping_locus +27175 chr16 HAVANA gene 50606076 50613684 2469.0 - 0 ENSG00000205414.1 antisense AC007608.1 2 OTTHUMG00000173398.1 +27176 chr16 HAVANA gene 50548330 50649249 17425.0 + 0 ENSG00000140807.6 protein_coding NKD1 2 OTTHUMG00000133169.6 overlapping_locus +27177 chr16 HAVANA gene 50666211 50671639 5275.0 + 0 ENSG00000260249.2 antisense AC007608.3 2 OTTHUMG00000173401.2 +27178 chr16 HAVANA gene 50666300 50681353 5754.0 - 0 ENSG00000167208.14 protein_coding SNX20 2 OTTHUMG00000133173.3 +27179 chr16 HAVANA gene 50712844 50713589 746.0 + 0 ENSG00000270120.1 sense_intronic AC007728.3 2 OTTHUMG00000184115.1 overlapping_locus +27180 chr16 HAVANA gene 50693588 50734041 6873.0 + 0 ENSG00000167207.13 protein_coding NOD2 2 OTTHUMG00000133171.9 overlapping_locus +27181 chr16 ENSEMBL gene 50742305 50742377 73.0 + 0 ENSG00000264947.1 miRNA MIR3181 3 +27182 chr16 HAVANA gene 50727417 50742815 3409.0 - 0 ENSG00000261644.2 antisense AC007728.2 2 OTTHUMG00000173403.2 +27183 chr16 HAVANA gene 50742050 50801935 12954.0 + 0 ENSG00000083799.17 protein_coding CYLD 1 OTTHUMG00000173404.5 ncRNA_host +27184 chr16 HAVANA gene 50783859 50803338 814.0 - 0 ENSG00000260616.6 antisense AC007728.1 2 OTTHUMG00000173405.2 +27185 chr16 HAVANA gene 50806668 50807629 352.0 + 0 ENSG00000261703.1 lincRNA LINC02168 1 OTTHUMG00000173406.1 +27186 chr16 ENSEMBL gene 50869455 50869575 121.0 - 0 ENSG00000199771.1 rRNA_pseudogene RNA5SP426 3 +27187 chr16 HAVANA gene 50856614 50879278 981.0 - 0 ENSG00000260042.1 lincRNA AC025810.1 2 OTTHUMG00000173281.1 +27188 chr16 HAVANA gene 50840017 50901063 3991.0 + 0 ENSG00000261241.6 lincRNA LINC02128 2 OTTHUMG00000173283.3 +27189 chr16 HAVANA gene 51017544 51035777 903.0 + 0 ENSG00000261637.2 lincRNA LINC02127 2 OTTHUMG00000173284.2 +27190 chr16 HAVANA gene 51035118 51038764 584.0 - 0 ENSG00000260605.1 lincRNA AC027688.1 2 OTTHUMG00000173285.1 +27191 chr16 HAVANA gene 51054728 51056399 511.0 - 0 ENSG00000260620.1 lincRNA AC027688.2 2 OTTHUMG00000173286.1 +27192 chr16 HAVANA gene 51107571 51108021 451.0 + 0 ENSG00000261282.1 processed_pseudogene SOD1P2 1 OTTHUMG00000173288.1 pseudo_consens +27193 chr16 HAVANA gene 51149239 51149819 487.0 + 0 ENSG00000261238.1 antisense AC009166.1 2 OTTHUMG00000173290.1 +27194 chr16 HAVANA gene 51135975 51151367 5660.0 - 0 ENSG00000103449.11 protein_coding SALL1 1 OTTHUMG00000133176.3 +27195 chr16 HAVANA gene 51176066 51178898 2833.0 + 0 ENSG00000280344.1 TEC AC009166.2 2 OTTHUMG00000176149.1 +27196 chr16 HAVANA gene 51244054 51244123 70.0 + 0 ENSG00000261047.1 processed_pseudogene AC137527.1 2 OTTHUMG00000173248.2 +27197 chr16 HAVANA gene 51277852 51279112 1261.0 + 0 ENSG00000260818.2 processed_pseudogene UNGP1 1 OTTHUMG00000176689.2 pseudo_consens +27198 chr16 HAVANA gene 51150770 51442519 8149.0 + 0 ENSG00000285367.1 lincRNA AC087564.1 2 OTTHUMG00000192525.1 +27199 chr16 HAVANA gene 51354456 51525157 2647.0 - 0 ENSG00000260850.2 lincRNA AC007344.1 2 OTTHUMG00000173249.2 +27200 chr16 HAVANA gene 51553436 51647132 1924.0 + 0 ENSG00000224578.5 protein_coding HNRNPA1P48 2 OTTHUMG00000173250.2 retrogene +27201 chr16 ENSEMBL gene 51671236 51671563 328.0 - 0 ENSG00000223168.1 misc_RNA RN7SKP142 3 +27202 chr16 HAVANA gene 51762519 51773173 955.0 + 0 ENSG00000260057.5 lincRNA LINC01571 2 OTTHUMG00000173251.1 +27203 chr16 HAVANA gene 52005487 52078474 2968.0 - 0 ENSG00000261190.5 processed_transcript C16orf97 2 OTTHUMG00000173232.3 +27204 chr16 HAVANA gene 52078622 52080489 471.0 + 0 ENSG00000261470.1 antisense AC009039.1 2 OTTHUMG00000173233.1 +27205 chr16 HAVANA gene 52081568 52082096 529.0 - 0 ENSG00000279779.1 TEC AC009039.2 2 OTTHUMG00000173234.1 +27206 chr16 HAVANA gene 52083065 52085109 1658.0 - 0 ENSG00000260268.5 lincRNA LINC00919 2 OTTHUMG00000173235.1 +27207 chr16 HAVANA gene 52085280 52099067 1010.0 + 0 ENSG00000261749.2 lincRNA LINC02180 2 OTTHUMG00000173236.2 +27208 chr16 HAVANA gene 52198012 52227956 559.0 - 0 ENSG00000260975.1 lincRNA AC007333.2 2 OTTHUMG00000173237.1 +27209 chr16 HAVANA gene 52238082 52269440 630.0 + 0 ENSG00000260478.1 lincRNA AC007333.1 2 OTTHUMG00000173238.1 overlapping_locus +27210 chr16 HAVANA gene 52258564 52280638 1076.0 + 0 ENSG00000260887.2 lincRNA CASC22 2 OTTHUMG00000173239.2 overlapping_locus +27211 chr16 HAVANA gene 52436772 52437474 703.0 - 0 ENSG00000279427.1 TEC AC007490.1 2 OTTHUMG00000177924.1 +27212 chr16 HAVANA gene 52438005 52547802 5031.0 - 0 ENSG00000103460.16 protein_coding TOX3 2 OTTHUMG00000173222.4 +27213 chr16 HAVANA gene 52583694 52588879 1916.0 + 0 ENSG00000285800.1 lincRNA AC026462.5 2 OTTHUMG00000192953.1 +27214 chr16 HAVANA gene 52607762 52608158 286.0 - 0 ENSG00000260393.1 lincRNA AC026462.2 2 OTTHUMG00000173225.1 overlapping_locus +27215 chr16 HAVANA gene 52607349 52613908 1137.0 + 0 ENSG00000260963.1 lincRNA AC026462.3 2 OTTHUMG00000173224.1 +27216 chr16 HAVANA gene 52622115 52631088 1430.0 + 0 ENSG00000261261.2 lincRNA AC026462.4 2 OTTHUMG00000173226.2 +27217 chr16 HAVANA gene 52552090 52652105 1552.0 - 0 ENSG00000249231.7 lincRNA CASC16 2 OTTHUMG00000173223.2 overlapping_locus +27218 chr16 HAVANA gene 52655307 52656045 739.0 + 0 ENSG00000234337.4 processed_pseudogene AC026462.1 2 OTTHUMG00000173227.1 +27219 chr16 HAVANA gene 52934813 52935635 823.0 + 0 ENSG00000260326.1 processed_pseudogene PHBP21 1 OTTHUMG00000173183.1 pseudo_consens +27220 chr16 HAVANA gene 52942139 52943464 1326.0 + 0 ENSG00000260258.2 transcribed_processed_pseudogene AC007346.1 1 OTTHUMG00000173184.3 pseudo_consens +27221 chr16 HAVANA gene 53010395 53011286 892.0 - 0 ENSG00000260939.1 processed_pseudogene AC007346.2 1 OTTHUMG00000173185.1 pseudo_consens +27222 chr16 HAVANA gene 53035690 53052873 1983.0 - 0 ENSG00000277639.2 protein_coding AC007906.2 2 OTTHUMG00000173186.2 overlapping_locus +27223 chr16 HAVANA gene 53168522 53169450 510.0 + 0 ENSG00000261291.1 sense_intronic AC007906.1 2 OTTHUMG00000173190.1 overlapping_locus +27224 chr16 HAVANA gene 53227146 53227694 549.0 + 0 ENSG00000280227.1 TEC AC079416.3 2 OTTHUMG00000177925.1 overlapping_locus +27225 chr16 HAVANA gene 53298224 53299792 1569.0 + 0 ENSG00000261056.2 transcribed_processed_pseudogene AC079416.1 1 OTTHUMG00000173191.2 pseudo_consens,overlapping_locus +27226 chr16 HAVANA gene 53310797 53311989 1193.0 + 0 ENSG00000279589.1 TEC AC079416.2 2 OTTHUMG00000177926.1 overlapping_locus +27227 chr16 HAVANA gene 53055033 53329150 16502.0 + 0 ENSG00000177200.17 protein_coding CHD9 1 OTTHUMG00000173188.8 overlapping_locus +27228 chr16 ENSEMBL gene 53334562 53334664 103.0 + 0 ENSG00000238645.1 snoRNA RF01210 3 +27229 chr16 ENSEMBL gene 53337453 53337571 119.0 + 0 ENSG00000202193.1 rRNA_pseudogene RNA5SP427 3 +27230 chr16 HAVANA gene 53362019 53363678 395.0 - 0 ENSG00000259962.1 unprocessed_pseudogene AC007342.2 2 OTTHUMG00000173192.2 +27231 chr16 HAVANA gene 53364982 53373083 4322.0 - 0 ENSG00000260078.3 transcribed_unprocessed_pseudogene AC007342.3 2 OTTHUMG00000173193.2 +27232 chr16 HAVANA gene 53373493 53384745 1106.0 + 0 ENSG00000261804.1 lincRNA AC007342.4 2 OTTHUMG00000173195.1 +27233 chr16 HAVANA gene 53386944 53389085 2142.0 + 0 ENSG00000262714.1 lincRNA AC007342.5 2 OTTHUMG00000176690.2 +27234 chr16 HAVANA gene 53389886 53390563 678.0 + 0 ENSG00000279741.1 TEC AC007342.8 2 OTTHUMG00000177940.1 +27235 chr16 HAVANA gene 53391089 53392473 1385.0 + 0 ENSG00000280027.1 TEC AC007342.9 2 OTTHUMG00000177941.1 +27236 chr16 ENSEMBL gene 53443228 53443332 105.0 - 0 ENSG00000252569.1 snRNA RNU6-1153P 3 +27237 chr16 HAVANA gene 53448748 53449590 706.0 + 0 ENSG00000259926.1 sense_intronic AC007342.1 2 OTTHUMG00000173213.1 overlapping_locus +27238 chr16 HAVANA gene 53478957 53481550 2594.0 - 0 ENSG00000279344.1 TEC AC007342.6 2 OTTHUMG00000173214.1 +27239 chr16 HAVANA gene 53487607 53489943 2337.0 - 0 ENSG00000279722.1 TEC AC007342.7 2 OTTHUMG00000173215.1 +27240 chr16 HAVANA gene 53433977 53491649 7320.0 + 0 ENSG00000103479.15 protein_coding RBL2 1 OTTHUMG00000133198.6 overlapping_locus +27241 chr16 HAVANA gene 53491040 53504411 5202.0 - 0 ENSG00000166971.16 protein_coding AKTIP 1 OTTHUMG00000133199.5 +27242 chr16 HAVANA gene 53628256 53628816 561.0 - 0 ENSG00000275191.1 sense_intronic AC007497.1 2 OTTHUMG00000186930.1 +27243 chr16 HAVANA gene 53598153 53703938 12387.0 - 0 ENSG00000103494.13 protein_coding RPGRIP1L 1 OTTHUMG00000173125.5 +27244 chr16 HAVANA gene 53981229 53981912 547.0 - 0 ENSG00000261630.1 antisense AC007496.2 2 OTTHUMG00000173127.1 +27245 chr16 HAVANA gene 53991012 53994454 3443.0 + 0 ENSG00000280392.1 TEC AC007496.3 2 OTTHUMG00000176692.1 overlapping_locus +27246 chr16 HAVANA gene 53998313 53999969 739.0 - 0 ENSG00000260194.1 antisense AC007496.1 2 OTTHUMG00000173129.1 +27247 chr16 HAVANA gene 54033997 54054583 281.0 - 0 ENSG00000261049.2 antisense AC007347.1 2 OTTHUMG00000173130.1 +27248 chr16 ENSEMBL gene 54114697 54114878 180.0 - 0 ENSG00000280454.1 pseudogene AC007347.2 3 +27249 chr16 HAVANA gene 53701692 54158512 21379.0 + 0 ENSG00000140718.20 protein_coding FTO 2 OTTHUMG00000158780.5 overlapping_locus +27250 chr16 HAVANA gene 54239693 54240654 451.0 + 0 ENSG00000259759.1 lincRNA AC007907.1 1 OTTHUMG00000172229.2 +27251 chr16 HAVANA gene 54245544 54270879 854.0 - 0 ENSG00000259517.3 lincRNA LINC02169 1 OTTHUMG00000172230.4 +27252 chr16 HAVANA gene 54283304 54286763 2911.0 - 0 ENSG00000177508.11 protein_coding IRX3 2 OTTHUMG00000133200.4 +27253 chr16 HAVANA gene 54285604 54289568 1064.0 + 0 ENSG00000283689.1 antisense AC018553.2 2 OTTHUMG00000191630.1 +27254 chr16 HAVANA gene 54290965 54292422 1458.0 + 0 ENSG00000277559.1 lincRNA AC018553.1 2 OTTHUMG00000186932.1 +27255 chr16 HAVANA gene 54366007 54370699 2051.0 - 0 ENSG00000261803.1 lincRNA LINC02140 2 OTTHUMG00000173086.1 +27256 chr16 HAVANA gene 54542808 54559100 1732.0 - 0 ENSG00000283304.1 lincRNA LINC02183 2 OTTHUMG00000191631.1 +27257 chr16 HAVANA gene 54628963 54657662 2619.0 - 0 ENSG00000283258.1 lincRNA AC007491.1 2 OTTHUMG00000191632.1 +27258 chr16 HAVANA gene 54845189 54929189 5846.0 - 0 ENSG00000245694.9 lincRNA CRNDE 2 OTTHUMG00000172236.3 +27259 chr16 HAVANA gene 54930862 54934485 2845.0 + 0 ENSG00000176842.14 protein_coding IRX5 1 OTTHUMG00000133201.2 +27260 chr16 HAVANA gene 54937786 54938671 778.0 - 0 ENSG00000259725.1 lincRNA AC106738.2 2 OTTHUMG00000172238.1 +27261 chr16 HAVANA gene 54934913 54954665 359.0 + 0 ENSG00000259711.1 lincRNA AC106738.1 2 OTTHUMG00000172237.1 +27262 chr16 HAVANA gene 55007982 55008306 325.0 + 0 ENSG00000260147.1 processed_pseudogene MTND5P34 2 OTTHUMG00000173134.1 +27263 chr16 HAVANA gene 55045700 55049318 918.0 - 0 ENSG00000285775.1 lincRNA AC109136.1 2 OTTHUMG00000193258.1 +27264 chr16 ENSEMBL gene 55291379 55291675 297.0 - 0 ENSG00000239555.3 misc_RNA RN7SL841P 3 +27265 chr16 HAVANA gene 55321575 55322686 581.0 - 0 ENSG00000283423.1 lincRNA AC109462.3 2 OTTHUMG00000191633.1 +27266 chr16 HAVANA gene 55323760 55330760 3399.0 + 0 ENSG00000159387.7 protein_coding IRX6 2 OTTHUMG00000172239.4 +27267 chr16 HAVANA gene 55332355 55332967 613.0 + 0 ENSG00000263207.2 lincRNA AC109462.2 2 OTTHUMG00000177968.2 +27268 chr16 HAVANA gene 55259969 55333588 763.0 - 0 ENSG00000259283.2 antisense AC109462.1 2 OTTHUMG00000172240.2 ncRNA_host +27269 chr16 HAVANA gene 55352721 55353088 368.0 - 0 ENSG00000240760.1 processed_pseudogene RPL31P56 1 OTTHUMG00000158145.1 pseudo_consens +27270 chr16 HAVANA gene 55425574 55426130 557.0 - 0 ENSG00000274508.1 lincRNA AC007336.2 2 OTTHUMG00000186936.1 +27271 chr16 HAVANA gene 55426797 55462297 1515.0 - 0 ENSG00000260135.6 lincRNA MMP2-AS1 2 OTTHUMG00000176716.2 +27272 chr16 HAVANA gene 55486618 55488777 2160.0 + 0 ENSG00000279030.1 TEC AC007336.3 2 OTTHUMG00000177969.1 overlapping_locus +27273 chr16 HAVANA gene 55389700 55506691 4933.0 + 0 ENSG00000087245.12 protein_coding MMP2 1 OTTHUMG00000133202.5 overlapping_locus +27274 chr16 HAVANA gene 55538200 55542027 3828.0 + 0 ENSG00000261997.1 lincRNA AC007336.1 2 OTTHUMG00000177970.1 overlapping_locus +27275 chr16 HAVANA gene 55566672 55567687 1016.0 + 0 ENSG00000256812.1 protein_coding CAPNS2 2 OTTHUMG00000167812.1 overlapping_locus,retrogene +27276 chr16 HAVANA gene 55508998 55586670 7439.0 + 0 ENSG00000087253.12 protein_coding LPCAT2 2 OTTHUMG00000133238.3 overlapping_locus +27277 chr16 HAVANA gene 55655604 55706192 5463.0 + 0 ENSG00000103546.18 protein_coding SLC6A2 2 OTTHUMG00000133208.6 overlapping_locus +27278 chr16 HAVANA gene 55704119 55706422 2304.0 + 0 ENSG00000278928.1 TEC AC136621.1 2 OTTHUMG00000177971.1 overlapping_locus +27279 chr16 HAVANA gene 55728115 55750111 1242.0 + 0 ENSG00000260765.2 unprocessed_pseudogene CES1P2 2 OTTHUMG00000176717.2 +27280 chr16 HAVANA gene 55760566 55793960 3195.0 + 0 ENSG00000228695.10 transcribed_unprocessed_pseudogene CES1P1 2 OTTHUMG00000154668.3 +27281 chr16 HAVANA gene 55802851 55833337 2937.0 - 0 ENSG00000198848.12 protein_coding CES1 1 OTTHUMG00000176718.4 +27282 chr16 HAVANA gene 55846154 55956031 3204.0 - 0 ENSG00000159398.15 protein_coding CES5A 2 OTTHUMG00000133236.11 +27283 chr16 HAVANA gene 56108980 56109970 991.0 + 0 ENSG00000279523.1 TEC AC040168.1 2 OTTHUMG00000176720.1 overlapping_locus +27284 chr16 HAVANA gene 56109537 56137000 834.0 + 0 ENSG00000260041.5 lincRNA AC007495.2 2 OTTHUMG00000176721.1 overlapping_locus +27285 chr16 HAVANA gene 56092987 56191094 4021.0 - 0 ENSG00000246379.7 lincRNA AC007495.1 2 OTTHUMG00000176719.1 +27286 chr16 HAVANA gene 56192614 56194518 1905.0 - 0 ENSG00000261439.1 antisense DKFZP434H168 2 OTTHUMG00000176968.1 +27287 chr16 ENSEMBL gene 56245520 56245623 104.0 + 0 ENSG00000265281.1 miRNA MIR3935 3 +27288 chr16 HAVANA gene 56300616 56302904 1777.0 + 0 ENSG00000260198.1 sense_intronic AC009102.1 2 OTTHUMG00000176970.1 overlapping_locus +27289 chr16 HAVANA gene 56306845 56308335 1491.0 + 0 ENSG00000279764.1 TEC AC009102.3 2 OTTHUMG00000176971.1 overlapping_locus +27290 chr16 HAVANA gene 56351886 56353524 1639.0 - 0 ENSG00000272372.1 antisense AC009102.2 2 OTTHUMG00000185480.1 +27291 chr16 HAVANA gene 56191347 56357457 13697.0 + 0 ENSG00000087258.14 protein_coding GNAO1 1 OTTHUMG00000133241.10 ncRNA_host,overlapping_locus +27292 chr16 HAVANA gene 56409320 56411683 549.0 + 0 ENSG00000260621.1 antisense AC092140.1 2 OTTHUMG00000176983.1 +27293 chr16 HAVANA gene 56361452 56425538 5758.0 - 0 ENSG00000159461.14 protein_coding AMFR 2 OTTHUMG00000133239.5 +27294 chr16 HAVANA gene 56429133 56452199 5954.0 - 0 ENSG00000167005.13 protein_coding NUDT21 1 OTTHUMG00000133240.5 +27295 chr16 HAVANA gene 56465642 56466162 521.0 - 0 ENSG00000274031.1 antisense AC092140.2 2 OTTHUMG00000186939.1 +27296 chr16 HAVANA gene 56451490 56479100 5806.0 + 0 ENSG00000087263.16 protein_coding OGFOD1 2 OTTHUMG00000133237.4 +27297 chr16 HAVANA gene 56466836 56520283 8337.0 - 0 ENSG00000125124.11 protein_coding BBS2 1 OTTHUMG00000176943.9 +27298 chr16 HAVANA gene 56565049 56568957 294.0 + 0 ENSG00000102891.3 protein_coding MT4 2 OTTHUMG00000176863.1 +27299 chr16 HAVANA gene 56589074 56591088 1837.0 + 0 ENSG00000087250.8 protein_coding MT3 2 OTTHUMG00000133282.3 +27300 chr16 HAVANA gene 56608199 56609497 1299.0 + 0 ENSG00000125148.6 protein_coding MT2A 2 OTTHUMG00000133281.2 +27301 chr16 HAVANA gene 56609501 56611375 444.0 - 0 ENSG00000260823.1 lincRNA AC026461.3 2 OTTHUMG00000176939.1 +27302 chr16 HAVANA gene 56617476 56618818 411.0 + 0 ENSG00000260549.1 transcribed_unprocessed_pseudogene MT1L 2 OTTHUMG00000176212.2 +27303 chr16 HAVANA gene 56625475 56627112 1052.0 + 0 ENSG00000169715.14 protein_coding MT1E 2 OTTHUMG00000133014.2 +27304 chr16 HAVANA gene 56632233 56633986 942.0 + 0 ENSG00000205364.3 protein_coding MT1M 2 OTTHUMG00000176938.2 +27305 chr16 HAVANA gene 56635739 56637086 1001.0 + 0 ENSG00000255986.6 transcribed_unprocessed_pseudogene MT1JP 2 OTTHUMG00000176920.2 +27306 chr16 HAVANA gene 56638666 56640087 396.0 + 0 ENSG00000205362.11 protein_coding MT1A 2 OTTHUMG00000176919.1 +27307 chr16 HAVANA gene 56643705 56644786 191.0 + 0 ENSG00000205361.8 transcribed_unprocessed_pseudogene MT1DP 2 OTTHUMG00000158354.2 +27308 chr16 HAVANA gene 56648248 56649514 174.0 + 0 ENSG00000205360.6 transcribed_unprocessed_pseudogene MT1CP 2 OTTHUMG00000176918.1 overlapping_locus +27309 chr16 HAVANA gene 56648881 56652636 244.0 + 0 ENSG00000259923.1 processed_transcript AC026461.2 2 OTTHUMG00000176941.1 overlapping_locus +27310 chr16 HAVANA gene 56651899 56653204 380.0 + 0 ENSG00000169688.10 protein_coding MT1B 2 OTTHUMG00000133277.3 overlapping_locus +27311 chr16 HAVANA gene 56657694 56660698 1889.0 + 0 ENSG00000198417.6 protein_coding MT1F 2 OTTHUMG00000176838.3 +27312 chr16 HAVANA gene 56666731 56668065 750.0 - 0 ENSG00000125144.13 protein_coding MT1G 1 OTTHUMG00000133275.2 +27313 chr16 HAVANA gene 56669814 56671129 723.0 + 0 ENSG00000205358.3 protein_coding MT1H 2 OTTHUMG00000133283.2 +27314 chr16 HAVANA gene 56676132 56677763 242.0 + 0 ENSG00000275691.2 transcribed_unprocessed_pseudogene MT1IP 2 OTTHUMG00000186942.2 +27315 chr16 HAVANA gene 56682424 56684196 1773.0 + 0 ENSG00000187193.8 protein_coding MT1X 2 OTTHUMG00000133280.6 overlapping_locus +27316 chr16 HAVANA gene 56682470 56687807 551.0 + 0 ENSG00000259827.1 processed_transcript AC026461.1 2 OTTHUMG00000176837.2 overlapping_locus +27317 chr16 HAVANA gene 56686851 56688052 878.0 + 0 ENSG00000261429.2 processed_pseudogene DPPA2P4 1 OTTHUMG00000176801.2 pseudo_consens,overlapping_locus +27318 chr16 HAVANA gene 56708772 56729968 1201.0 - 0 ENSG00000261302.5 antisense AC106779.1 2 OTTHUMG00000176549.1 +27319 chr16 HAVANA gene 56730105 56850286 11136.0 + 0 ENSG00000102900.12 protein_coding NUP93 1 OTTHUMG00000133278.12 +27320 chr16 ENSEMBL gene 56858518 56858601 84.0 + 0 ENSG00000207649.3 miRNA MIR138-2 3 +27321 chr16 ENSEMBL gene 56904264 56904353 90.0 + 0 ENSG00000283471.1 miRNA MIR6863 3 +27322 chr16 HAVANA gene 56906534 56906956 423.0 + 0 ENSG00000243988.1 processed_pseudogene RPS24P17 1 OTTHUMG00000158147.1 pseudo_consens,overlapping_locus +27323 chr16 HAVANA gene 56865207 56915850 6180.0 + 0 ENSG00000070915.9 protein_coding SLC12A3 1 OTTHUMG00000133284.3 ncRNA_host,overlapping_locus +27324 chr16 HAVANA gene 56940278 56941342 601.0 + 0 ENSG00000261270.1 sense_intronic AC012181.2 2 OTTHUMG00000176494.1 overlapping_locus +27325 chr16 HAVANA gene 56941028 56941726 699.0 + 0 ENSG00000261114.1 sense_intronic AC012181.1 2 OTTHUMG00000176493.1 overlapping_locus +27326 chr16 HAVANA gene 56932048 56944863 5155.0 + 0 ENSG00000051108.14 protein_coding HERPUD1 1 OTTHUMG00000133276.9 overlapping_locus +27327 chr16 HAVANA gene 56961850 56983845 2085.0 + 0 ENSG00000087237.11 protein_coding CETP 1 OTTHUMG00000133279.3 +27328 chr16 HAVANA gene 57013071 57014100 1030.0 - 0 ENSG00000259922.1 processed_pseudogene AC023825.1 1 OTTHUMG00000175514.1 pseudo_consens +27329 chr16 HAVANA gene 57052505 57058497 672.0 - 0 ENSG00000260145.1 antisense AC023825.2 2 OTTHUMG00000175515.1 +27330 chr16 HAVANA gene 56989485 57083531 12386.0 + 0 ENSG00000140853.15 protein_coding NLRC5 2 OTTHUMG00000133470.6 +27331 chr16 HAVANA gene 57091213 57092303 472.0 - 0 ENSG00000260148.1 antisense AC009090.2 2 OTTHUMG00000175516.1 +27332 chr16 HAVANA gene 57140896 57144586 3691.0 - 0 ENSG00000279019.1 TEC AC009090.4 2 OTTHUMG00000175517.1 +27333 chr16 HAVANA gene 57142652 57144936 2285.0 + 0 ENSG00000279803.1 TEC AC009090.5 2 OTTHUMG00000176659.1 overlapping_locus +27334 chr16 HAVANA gene 57092537 57148367 7781.0 + 0 ENSG00000140848.16 protein_coding CPNE2 2 OTTHUMG00000133471.5 overlapping_locus +27335 chr16 HAVANA gene 57177349 57181390 3524.0 + 0 ENSG00000285979.1 antisense AC009090.6 2 OTTHUMG00000193291.1 +27336 chr16 HAVANA gene 57152466 57186116 4347.0 - 0 ENSG00000172775.16 protein_coding FAM192A 1 OTTHUMG00000176660.7 +27337 chr16 HAVANA gene 57186137 57240475 6064.0 + 0 ENSG00000159579.13 protein_coding RSPRY1 1 OTTHUMG00000133462.6 +27338 chr16 HAVANA gene 57245832 57246396 565.0 - 0 ENSG00000276663.1 antisense AC009090.3 2 OTTHUMG00000186945.1 +27339 chr16 HAVANA gene 57247350 57248492 358.0 + 0 ENSG00000260038.1 sense_intronic AC009090.1 2 OTTHUMG00000176605.1 overlapping_locus +27340 chr16 HAVANA gene 57245098 57253635 2155.0 + 0 ENSG00000102931.7 protein_coding ARL2BP 1 OTTHUMG00000133459.3 overlapping_locus +27341 chr16 HAVANA gene 57248547 57284687 8720.0 - 0 ENSG00000102934.9 protein_coding PLLP 1 OTTHUMG00000133465.5 +27342 chr16 HAVANA gene 57321352 57322117 455.0 + 0 ENSG00000260965.1 processed_pseudogene RPL23AP91 1 OTTHUMG00000175519.1 pseudo_consens +27343 chr16 HAVANA gene 57332379 57332599 221.0 - 0 ENSG00000271456.1 processed_pseudogene AC108081.1 1 OTTHUMG00000184818.1 pseudo_consens +27344 chr16 HAVANA gene 57358772 57366190 2929.0 + 0 ENSG00000102962.4 protein_coding CCL22 2 OTTHUMG00000133454.1 +27345 chr16 HAVANA gene 57372458 57385048 5983.0 + 0 ENSG00000006210.6 protein_coding CX3CL1 1 OTTHUMG00000133469.5 +27346 chr16 HAVANA gene 57404767 57416062 620.0 + 0 ENSG00000102970.10 protein_coding CCL17 2 OTTHUMG00000133468.1 +27347 chr16 HAVANA gene 57428169 57447528 3509.0 - 0 ENSG00000005194.14 protein_coding CIAPIN1 1 OTTHUMG00000133457.7 +27348 chr16 HAVANA gene 57447425 57461275 4324.0 + 0 ENSG00000088682.13 protein_coding COQ9 1 OTTHUMG00000176582.4 overlapping_locus +27349 chr16 HAVANA gene 57461055 57462737 298.0 + 0 ENSG00000260345.1 processed_transcript AC009052.1 2 OTTHUMG00000176595.1 overlapping_locus +27350 chr16 HAVANA gene 57462387 57472010 3940.0 + 0 ENSG00000102978.12 protein_coding POLR2C 2 OTTHUMG00000133464.3 overlapping_locus +27351 chr16 HAVANA gene 57471922 57487327 4788.0 - 0 ENSG00000125170.10 protein_coding DOK4 2 OTTHUMG00000133460.8 +27352 chr16 HAVANA gene 57512178 57536599 2582.0 - 0 ENSG00000135736.5 protein_coding CCDC102A 2 OTTHUMG00000133472.2 +27353 chr16 HAVANA gene 57542421 57591681 5852.0 + 0 ENSG00000159618.15 protein_coding ADGRG5 2 OTTHUMG00000133461.5 +27354 chr16 HAVANA gene 57603137 57603697 561.0 + 0 ENSG00000260828.1 processed_pseudogene HMGB3P32 1 OTTHUMG00000176434.1 pseudo_consens +27355 chr16 HAVANA gene 57622034 57631647 556.0 - 0 ENSG00000261633.1 antisense AC018552.3 2 OTTHUMG00000176792.1 +27356 chr16 HAVANA gene 57610652 57665580 8659.0 + 0 ENSG00000205336.11 protein_coding ADGRG1 1 OTTHUMG00000176742.22 +27357 chr16 HAVANA gene 57668187 57689378 3330.0 + 0 ENSG00000182885.16 protein_coding ADGRG3 2 OTTHUMG00000133458.2 +27358 chr16 HAVANA gene 57681124 57701730 804.0 - 0 ENSG00000260467.1 antisense AC018552.2 2 OTTHUMG00000176793.1 +27359 chr16 HAVANA gene 57713782 57714957 811.0 + 0 ENSG00000260438.1 processed_pseudogene AC018552.1 1 OTTHUMG00000176435.1 pseudo_consens,overlapping_locus +27360 chr16 HAVANA gene 57694793 57731805 5151.0 + 0 ENSG00000159625.14 protein_coding DRC7 1 OTTHUMG00000133473.5 overlapping_locus +27361 chr16 HAVANA gene 57735730 57757250 4591.0 + 0 ENSG00000140854.12 protein_coding KATNB1 2 OTTHUMG00000133467.6 +27362 chr16 HAVANA gene 57759358 57760024 667.0 + 0 ENSG00000276166.1 antisense AC092118.2 2 OTTHUMG00000186949.1 +27363 chr16 ENSEMBL gene 57772289 57772352 64.0 - 0 ENSG00000274816.1 miRNA MIR6772 3 +27364 chr16 HAVANA gene 57798186 57816946 2114.0 + 0 ENSG00000187185.4 lincRNA AC092118.1 1 OTTHUMG00000176702.2 +27365 chr16 ENSEMBL gene 57830536 57830642 107.0 - 0 ENSG00000206833.1 snRNA RNU6-20P 3 +27366 chr16 HAVANA gene 57758217 57863053 9600.0 - 0 ENSG00000140859.15 protein_coding KIFC3 1 OTTHUMG00000133455.19 ncRNA_host +27367 chr16 HAVANA gene 57882340 57971116 7298.0 - 0 ENSG00000070729.13 protein_coding CNGB1 2 OTTHUMG00000154810.6 +27368 chr16 HAVANA gene 57976435 57988116 3103.0 + 0 ENSG00000159648.11 protein_coding TEPP 2 OTTHUMG00000133463.5 +27369 chr16 HAVANA gene 57994668 58000453 4274.0 - 0 ENSG00000166188.2 protein_coding ZNF319 2 OTTHUMG00000175512.3 +27370 chr16 HAVANA gene 57999546 58021618 8265.0 + 0 ENSG00000103005.11 protein_coding USB1 1 OTTHUMG00000133456.4 +27371 chr16 HAVANA gene 58025566 58046901 4419.0 + 0 ENSG00000102996.4 protein_coding MMP15 2 OTTHUMG00000133466.2 +27372 chr16 ENSEMBL gene 58083068 58083168 101.0 - 0 ENSG00000207173.1 misc_RNA RF00019 3 +27373 chr16 HAVANA gene 58092053 58092947 895.0 - 0 ENSG00000261151.1 processed_pseudogene AC012182.1 1 OTTHUMG00000175424.1 pseudo_consens +27374 chr16 HAVANA gene 58116885 58119353 415.0 + 0 ENSG00000260545.1 antisense AC026771.1 2 OTTHUMG00000173246.1 +27375 chr16 HAVANA gene 58113588 58129450 2375.0 - 0 ENSG00000070761.7 protein_coding CFAP20 1 OTTHUMG00000133490.4 +27376 chr16 HAVANA gene 58129529 58159133 577.0 + 0 ENSG00000260927.1 antisense AC009107.2 2 OTTHUMG00000173247.1 +27377 chr16 HAVANA gene 58157907 58197920 6905.0 - 0 ENSG00000070770.8 protein_coding CSNK2A2 2 OTTHUMG00000133488.4 +27378 chr16 ENSEMBL gene 58199568 58199836 269.0 - 0 ENSG00000240863.3 misc_RNA RN7SL645P 3 +27379 chr16 HAVANA gene 58197112 58217805 330.0 + 0 ENSG00000260867.1 antisense AC009107.1 2 OTTHUMG00000173230.1 +27380 chr16 HAVANA gene 58231157 58283836 5927.0 + 0 ENSG00000103021.9 protein_coding CCDC113 1 OTTHUMG00000133489.3 +27381 chr16 HAVANA gene 58279997 58295047 2112.0 - 0 ENSG00000103023.11 protein_coding PRSS54 2 OTTHUMG00000173231.4 +27382 chr16 ENSEMBL gene 58378052 58378148 97.0 - 0 ENSG00000212379.1 snRNA RNU6-269P 3 +27383 chr16 HAVANA gene 58382989 58383798 374.0 - 0 ENSG00000261078.1 antisense AC009118.1 2 OTTHUMG00000173228.1 +27384 chr16 ENSEMBL gene 58384442 58384542 101.0 - 0 ENSG00000252271.1 snRNA RNU6-1110P 3 +27385 chr16 HAVANA gene 58392153 58392807 655.0 - 0 ENSG00000276131.1 antisense AC009118.2 2 OTTHUMG00000186952.2 +27386 chr16 HAVANA gene 58295080 58406144 5105.0 + 0 ENSG00000181938.13 protein_coding GINS3 1 OTTHUMG00000133486.4 +27387 chr16 HAVANA gene 58421326 58462470 1776.0 + 0 ENSG00000260186.5 lincRNA LINC02137 2 OTTHUMG00000175407.1 +27388 chr16 ENSEMBL gene 58496908 58497014 107.0 + 0 ENSG00000200556.1 snRNA RNU6-103P 3 +27389 chr16 HAVANA gene 58462846 58513628 9647.0 + 0 ENSG00000103034.14 protein_coding NDRG4 1 OTTHUMG00000133485.18 ncRNA_host +27390 chr16 HAVANA gene 58515479 58521181 5078.0 + 0 ENSG00000103037.11 protein_coding SETD6 1 OTTHUMG00000150276.6 +27391 chr16 HAVANA gene 58522970 58523842 873.0 + 0 ENSG00000276259.1 antisense AC009118.3 2 OTTHUMG00000186956.1 +27392 chr16 ENSEMBL gene 58548499 58548633 135.0 - 0 ENSG00000207493.1 snoRNA SNORA46 3 +27393 chr16 ENSEMBL gene 58559796 58559929 134.0 - 0 ENSG00000206952.3 snoRNA SNORA50A 3 +27394 chr16 ENSEMBL gene 58559796 58559931 136.0 - 0 ENSG00000281910.1 snoRNA SNORA50A 3 +27395 chr16 HAVANA gene 58597589 58597945 357.0 - 0 ENSG00000260865.1 transcribed_processed_pseudogene AC010287.1 1 OTTHUMG00000173135.1 pseudo_consens,overlapping_locus +27396 chr16 HAVANA gene 58519951 58629886 10852.0 - 0 ENSG00000125107.17 protein_coding CNOT1 1 OTTHUMG00000133487.11 ncRNA_host,overlapping_locus +27397 chr16 HAVANA gene 58665109 58685104 6991.0 - 0 ENSG00000103042.8 protein_coding SLC38A7 1 OTTHUMG00000133491.7 +27398 chr16 HAVANA gene 58705799 58706297 499.0 - 0 ENSG00000279889.1 TEC AC012183.1 2 OTTHUMG00000173047.1 +27399 chr16 HAVANA gene 58707131 58734357 3766.0 - 0 ENSG00000125166.12 protein_coding GOT2 2 OTTHUMG00000133769.4 +27400 chr16 ENSEMBL gene 58744251 58744357 107.0 - 0 ENSG00000200424.1 snRNA RNU6-1155P 3 +27401 chr16 ENSEMBL gene 58770524 58770820 297.0 + 0 ENSG00000244003.3 misc_RNA RN7SL143P 3 +27402 chr16 HAVANA gene 58776540 58777563 700.0 + 0 ENSG00000260451.1 processed_pseudogene GEMIN8P2 1 OTTHUMG00000172972.1 pseudo_consens,overlapping_locus +27403 chr16 HAVANA gene 58825891 58826368 478.0 + 0 ENSG00000242423.2 processed_pseudogene RPL12P36 1 OTTHUMG00000158154.2 pseudo_consens,overlapping_locus +27404 chr16 HAVANA gene 58847807 58880213 552.0 - 0 ENSG00000261638.1 lincRNA AC092378.2 2 OTTHUMG00000173081.1 +27405 chr16 ENSEMBL gene 59004213 59004494 282.0 + 0 ENSG00000275808.1 misc_RNA RF00017 3 +27406 chr16 HAVANA gene 59088837 59089091 255.0 + 0 ENSG00000244043.1 processed_pseudogene RPS27P27 1 OTTHUMG00000158166.1 pseudo_consens,overlapping_locus +27407 chr16 HAVANA gene 58733912 59108974 2665.0 + 0 ENSG00000245768.6 lincRNA AC092378.1 2 OTTHUMG00000173082.2 ncRNA_host,overlapping_locus +27408 chr16 HAVANA gene 59166951 59167152 202.0 - 0 ENSG00000261144.1 processed_pseudogene AC092121.1 1 OTTHUMG00000173083.1 pseudo_consens +27409 chr16 ENSEMBL gene 59540126 59540266 141.0 + 0 ENSG00000200062.1 snRNA RNU4-58P 3 +27410 chr16 HAVANA gene 59655602 59656336 526.0 + 0 ENSG00000270222.1 processed_pseudogene DUXAP11 1 OTTHUMG00000184807.1 pseudo_consens +27411 chr16 HAVANA gene 59709993 59755026 1307.0 - 0 ENSG00000260240.4 transcribed_processed_pseudogene APOOP5 1 OTTHUMG00000173108.3 pseudo_consens +27412 chr16 HAVANA gene 60024578 60025141 426.0 - 0 ENSG00000261278.1 processed_pseudogene AC009094.1 1 OTTHUMG00000173094.1 pseudo_consens +27413 chr16 HAVANA gene 59855353 60053973 6586.0 + 0 ENSG00000261807.2 lincRNA LINC02141 2 OTTHUMG00000173092.3 +27414 chr16 HAVANA gene 60357214 60357474 261.0 + 0 ENSG00000261590.1 processed_pseudogene AC018554.2 1 OTTHUMG00000173090.1 pseudo_consens +27415 chr16 HAVANA gene 60358455 60359480 1026.0 - 0 ENSG00000278499.2 protein_coding AC018554.3 2 OTTHUMG00000189254.2 +27416 chr16 HAVANA gene 60359842 60442245 1054.0 + 0 ENSG00000261436.5 lincRNA AC018554.1 2 OTTHUMG00000173088.1 +27417 chr16 HAVANA gene 60486819 60523250 565.0 - 0 ENSG00000261310.1 lincRNA AC009081.1 2 OTTHUMG00000173089.1 +27418 chr16 HAVANA gene 60654235 60656649 1980.0 - 0 ENSG00000259844.2 processed_pseudogene GNPATP 1 OTTHUMG00000173087.2 pseudo_consens +27419 chr16 HAVANA gene 60925733 60928541 1377.0 - 0 ENSG00000261178.2 unprocessed_pseudogene AC009169.1 1 OTTHUMG00000175844.2 pseudo_consens +27420 chr16 HAVANA gene 61055399 61055964 566.0 - 0 ENSG00000224631.4 transcribed_processed_pseudogene RPS27AP16 1 OTTHUMG00000158168.2 pseudo_consens +27421 chr16 HAVANA gene 61691756 61693750 1995.0 - 0 ENSG00000260600.1 sense_intronic AC092125.1 2 OTTHUMG00000175403.1 overlapping_locus +27422 chr16 ENSEMBL gene 61743154 61743476 323.0 - 0 ENSG00000201289.1 misc_RNA RN7SKP76 3 +27423 chr16 HAVANA gene 61918321 61940697 714.0 + 0 ENSG00000260115.1 antisense AC012174.1 2 OTTHUMG00000176319.1 +27424 chr16 HAVANA gene 61647242 62037035 13529.0 - 0 ENSG00000150394.13 protein_coding CDH8 1 OTTHUMG00000137493.7 ncRNA_host,overlapping_locus +27425 chr16 ENSEMBL gene 62187540 62187646 107.0 - 0 ENSG00000207441.1 snRNA RNU6-21P 3 +27426 chr16 HAVANA gene 62342420 62342557 138.0 + 0 ENSG00000280261.1 TEC AC009161.2 2 OTTHUMG00000176305.1 +27427 chr16 HAVANA gene 62357371 62357746 376.0 + 0 ENSG00000237901.1 processed_pseudogene AC009161.1 2 OTTHUMG00000128479.1 +27428 chr16 HAVANA gene 62596372 62598449 558.0 + 0 ENSG00000231589.1 lincRNA AC009110.1 1 OTTHUMG00000150106.1 +27429 chr16 HAVANA gene 62808222 62808706 485.0 - 0 ENSG00000260332.1 processed_pseudogene AC010546.1 1 OTTHUMG00000177031.1 pseudo_consens +27430 chr16 HAVANA gene 63066526 63066990 465.0 - 0 ENSG00000269986.1 sense_intronic AC040174.2 2 OTTHUMG00000184074.1 overlapping_locus +27431 chr16 HAVANA gene 63056786 63129654 3825.0 - 0 ENSG00000261502.3 processed_transcript AC040174.1 2 OTTHUMG00000177973.1 overlapping_locus +27432 chr16 HAVANA gene 63180610 63181071 462.0 - 0 ENSG00000261199.1 processed_pseudogene UBE2FP2 1 OTTHUMG00000177029.2 pseudo_consens +27433 chr16 HAVANA gene 63350763 63351149 387.0 - 0 ENSG00000241808.1 processed_pseudogene RPS15AP34 1 OTTHUMG00000158177.1 pseudo_consens,overlapping_locus +27434 chr16 HAVANA gene 63368844 63369456 556.0 + 0 ENSG00000261743.1 lincRNA AC138305.2 2 OTTHUMG00000177082.1 +27435 chr16 HAVANA gene 63397707 63397946 240.0 + 0 ENSG00000279225.1 TEC AC138305.3 2 OTTHUMG00000177081.2 +27436 chr16 HAVANA gene 63314264 63618046 813.0 - 0 ENSG00000260658.5 lincRNA AC138305.1 2 OTTHUMG00000176432.3 overlapping_locus +27437 chr16 HAVANA gene 63703483 63703665 183.0 + 0 ENSG00000259864.1 processed_pseudogene AC018846.1 1 OTTHUMG00000172799.1 pseudo_consens +27438 chr16 HAVANA gene 63730277 63754757 443.0 + 0 ENSG00000261014.1 lincRNA LINC02165 2 OTTHUMG00000175762.1 +27439 chr16 HAVANA gene 63935778 63936906 1129.0 + 0 ENSG00000261653.1 lincRNA AC092337.1 2 OTTHUMG00000177083.1 +27440 chr16 HAVANA gene 64155169 64156574 1406.0 + 0 ENSG00000260715.1 lincRNA AC093536.2 2 OTTHUMG00000175763.1 +27441 chr16 HAVANA gene 64260570 64261239 554.0 - 0 ENSG00000260668.1 processed_pseudogene AC093536.1 1 OTTHUMG00000172807.2 pseudo_consens,overlapping_locus +27442 chr16 HAVANA gene 64242608 64343909 861.0 - 0 ENSG00000261028.1 lincRNA AC012322.1 2 OTTHUMG00000172806.1 overlapping_locus +27443 chr16 HAVANA gene 64364781 64600247 548.0 + 0 ENSG00000259846.1 lincRNA AC092131.1 2 OTTHUMG00000172800.2 +27444 chr16 HAVANA gene 64735925 64737283 935.0 + 0 ENSG00000260187.2 transcribed_processed_pseudogene PPIAP48 1 OTTHUMG00000172808.2 pseudo_consens +27445 chr16 HAVANA gene 64738323 64738564 242.0 + 0 ENSG00000260068.1 processed_pseudogene AC009101.1 1 OTTHUMG00000176744.1 pseudo_consens +27446 chr16 HAVANA gene 64981123 64983227 2105.0 - 0 ENSG00000278893.1 TEC AC010533.1 2 OTTHUMG00000176437.1 overlapping_locus +27447 chr16 HAVANA gene 64943753 65126112 13381.0 - 0 ENSG00000140937.13 protein_coding CDH11 1 OTTHUMG00000137494.6 overlapping_locus +27448 chr16 HAVANA gene 65141756 65176713 890.0 - 0 ENSG00000259847.1 lincRNA LINC02126 2 OTTHUMG00000172809.2 +27449 chr16 HAVANA gene 65190973 65234914 1464.0 - 0 ENSG00000260834.1 lincRNA AC009055.2 2 OTTHUMG00000172810.2 +27450 chr16 HAVANA gene 65233056 65432820 781.0 + 0 ENSG00000260364.1 lincRNA AC009055.1 2 OTTHUMG00000172811.2 +27451 chr16 HAVANA gene 65284499 65576300 2089.0 - 0 ENSG00000261742.5 lincRNA LINC00922 2 OTTHUMG00000172812.2 +27452 chr16 HAVANA gene 65601101 65601698 472.0 - 0 ENSG00000260004.1 lincRNA AC092138.1 2 OTTHUMG00000173312.1 +27453 chr16 HAVANA gene 65580668 65646947 428.0 + 0 ENSG00000261818.1 lincRNA AC092138.2 2 OTTHUMG00000173311.1 +27454 chr16 HAVANA gene 65861112 65863784 2673.0 - 0 ENSG00000260695.1 lincRNA AC022164.1 2 OTTHUMG00000173313.1 +27455 chr16 HAVANA gene 65938189 65938453 265.0 - 0 ENSG00000261234.1 processed_pseudogene AC025281.1 1 OTTHUMG00000173314.1 pseudo_consens +27456 chr16 ENSEMBL gene 66301809 66301940 132.0 + 0 ENSG00000201999.1 rRNA_pseudogene RNA5SP428 3 +27457 chr16 HAVANA gene 66366622 66404786 5972.0 + 0 ENSG00000179776.18 protein_coding CDH5 1 OTTHUMG00000137495.11 +27458 chr16 HAVANA gene 66408524 66412135 2147.0 + 0 ENSG00000246898.1 lincRNA LINC00920 2 OTTHUMG00000175510.1 +27459 chr16 HAVANA gene 66450998 66451351 354.0 - 0 ENSG00000260146.1 processed_pseudogene AC132186.1 1 OTTHUMG00000173371.1 pseudo_consens +27460 chr16 HAVANA gene 66469796 66481230 1037.0 - 0 ENSG00000261656.5 antisense BEAN1-AS1 2 OTTHUMG00000175781.2 overlapping_locus +27461 chr16 HAVANA gene 66427297 66493529 7379.0 + 0 ENSG00000166546.13 protein_coding BEAN1 1 OTTHUMG00000173370.6 +27462 chr16 HAVANA gene 66509437 66510048 511.0 + 0 ENSG00000260755.1 lincRNA AC010542.2 2 OTTHUMG00000175782.1 +27463 chr16 HAVANA gene 66469812 66517312 843.0 - 0 ENSG00000260851.6 protein_coding AC010542.3 2 OTTHUMG00000176745.2 overlapping_locus +27464 chr16 ENSEMBL gene 66550457 66550567 111.0 + 0 ENSG00000275745.1 misc_RNA RF00019 3 +27465 chr16 HAVANA gene 66549280 66551189 1910.0 + 0 ENSG00000261519.3 lincRNA AC010542.4 2 OTTHUMG00000176438.1 ncRNA_host +27466 chr16 HAVANA gene 66508003 66552544 7169.0 - 0 ENSG00000166548.15 protein_coding TK2 2 OTTHUMG00000137499.10 overlapping_locus +27467 chr16 HAVANA gene 66565620 66566001 382.0 - 0 ENSG00000277978.1 antisense AC010542.5 2 OTTHUMG00000186957.1 +27468 chr16 HAVANA gene 66552563 66566251 1161.0 + 0 ENSG00000217555.12 protein_coding CKLF 2 OTTHUMG00000137504.3 overlapping_locus +27469 chr16 HAVANA gene 66552587 66579135 1413.0 + 0 ENSG00000254788.7 protein_coding CKLF-CMTM1 1 OTTHUMG00000167106.2 overlapping_locus +27470 chr16 HAVANA gene 66566393 66579137 1465.0 + 0 ENSG00000089505.17 protein_coding CMTM1 1 OTTHUMG00000137502.5 overlapping_locus +27471 chr16 HAVANA gene 66579983 66580716 555.0 - 0 ENSG00000260650.1 antisense AC010542.1 2 OTTHUMG00000175511.1 +27472 chr16 HAVANA gene 66579448 66588275 1151.0 + 0 ENSG00000140932.9 protein_coding CMTM2 2 OTTHUMG00000137501.3 +27473 chr16 HAVANA gene 66603874 66613892 3163.0 + 0 ENSG00000140931.19 protein_coding CMTM3 1 OTTHUMG00000137503.8 +27474 chr16 HAVANA gene 66614750 66696707 8117.0 - 0 ENSG00000183723.12 protein_coding CMTM4 2 OTTHUMG00000137500.4 +27475 chr16 HAVANA gene 66720897 66731785 1790.0 + 0 ENSG00000260465.1 antisense AC018557.1 2 OTTHUMG00000173475.1 +27476 chr16 HAVANA gene 66738238 66739722 1090.0 + 0 ENSG00000260558.2 lincRNA AC018557.2 2 OTTHUMG00000173476.2 +27477 chr16 HAVANA gene 66720893 66751798 8278.0 - 0 ENSG00000135720.12 protein_coding DYNC1LI2 1 OTTHUMG00000137523.6 +27478 chr16 HAVANA gene 66751752 66754740 2894.0 + 0 ENSG00000246777.1 lincRNA AC044802.1 2 OTTHUMG00000173477.1 +27479 chr16 HAVANA gene 66754976 66801620 3095.0 - 0 ENSG00000249961.9 protein_coding TERB1 2 OTTHUMG00000133562.5 +27480 chr16 HAVANA gene 66841433 66853448 434.0 - 0 ENSG00000258122.1 antisense AC044802.2 2 OTTHUMG00000170125.1 overlapping_locus +27481 chr16 HAVANA gene 66844379 66854153 1862.0 + 0 ENSG00000168748.13 protein_coding CA7 2 OTTHUMG00000137524.3 +27482 chr16 HAVANA gene 66802875 66873256 4810.0 - 0 ENSG00000159593.14 protein_coding NAE1 1 OTTHUMG00000137513.7 overlapping_locus +27483 chr16 HAVANA gene 66878589 66895754 8364.0 + 0 ENSG00000172840.6 protein_coding PDP2 2 OTTHUMG00000137512.8 +27484 chr16 HAVANA gene 66908122 66918984 3656.0 - 0 ENSG00000166589.12 protein_coding CDH16 1 OTTHUMG00000137518.6 +27485 chr16 HAVANA gene 66921679 66925644 1709.0 - 0 ENSG00000166592.11 protein_coding RRAD 2 OTTHUMG00000137511.4 +27486 chr16 HAVANA gene 66932055 66934423 1070.0 - 0 ENSG00000166595.11 protein_coding CIAO2B 2 OTTHUMG00000175408.3 +27487 chr16 HAVANA gene 66944660 66945096 437.0 - 0 ENSG00000280416.1 TEC AC009084.3 2 OTTHUMG00000176425.1 +27488 chr16 HAVANA gene 66934444 66945096 5343.0 + 0 ENSG00000172831.11 protein_coding CES2 2 OTTHUMG00000137517.5 overlapping_locus +27489 chr16 HAVANA gene 66942712 66963256 317.0 + 0 ENSG00000265408.1 processed_transcript AC009084.1 2 OTTHUMG00000178323.1 overlapping_locus +27490 chr16 HAVANA gene 66961237 66975148 4935.0 + 0 ENSG00000172828.12 protein_coding CES3 1 OTTHUMG00000137525.3 overlapping_locus +27491 chr16 HAVANA gene 67006672 67009481 2810.0 - 0 ENSG00000280334.1 TEC AC009084.2 2 OTTHUMG00000178324.1 +27492 chr16 HAVANA gene 66988589 67009758 4340.0 + 0 ENSG00000172824.15 protein_coding CES4A 2 OTTHUMG00000167866.5 +27493 chr16 ENSEMBL gene 67019519 67019817 299.0 + 0 ENSG00000265918.2 misc_RNA RN7SL543P 3 +27494 chr16 HAVANA gene 67029116 67101058 4129.0 + 0 ENSG00000067955.13 protein_coding CBFB 1 OTTHUMG00000137520.5 +27495 chr16 HAVANA gene 67109958 67148539 5965.0 + 0 ENSG00000125149.11 protein_coding C16orf70 2 OTTHUMG00000137510.5 +27496 chr16 HAVANA gene 67148105 67151214 2917.0 - 0 ENSG00000237172.3 protein_coding B3GNT9 2 OTTHUMG00000173315.1 +27497 chr16 HAVANA gene 67154180 67160298 2567.0 - 0 ENSG00000102871.15 protein_coding TRADD 2 OTTHUMG00000137519.3 +27498 chr16 HAVANA gene 67159931 67164570 3130.0 + 0 ENSG00000135722.8 protein_coding FBXL8 1 OTTHUMG00000137514.4 overlapping_locus +27499 chr16 HAVANA gene 67163385 67165815 2009.0 + 0 ENSG00000265690.7 protein_coding AC074143.1 2 OTTHUMG00000163737.3 overlapping_locus +27500 chr16 HAVANA gene 67164681 67169945 3377.0 + 0 ENSG00000102878.16 protein_coding HSF4 1 OTTHUMG00000178325.2 overlapping_locus +27501 chr16 HAVANA gene 67170154 67175735 2992.0 + 0 ENSG00000140939.14 protein_coding NOL3 1 OTTHUMG00000173316.3 +27502 chr16 HAVANA gene 67175602 67184040 4780.0 - 0 ENSG00000196123.12 protein_coding KIAA0895L 2 OTTHUMG00000172891.6 +27503 chr16 HAVANA gene 67184366 67190204 3077.0 - 0 ENSG00000179044.15 protein_coding EXOC3L1 1 OTTHUMG00000137508.5 +27504 chr16 HAVANA gene 67192169 67198918 3582.0 + 0 ENSG00000205250.8 protein_coding E2F4 2 OTTHUMG00000172975.2 +27505 chr16 ENSEMBL gene 67202321 67202395 75.0 - 0 ENSG00000207948.3 miRNA MIR328 3 +27506 chr16 HAVANA gene 67199111 67204029 2575.0 + 0 ENSG00000102890.14 protein_coding ELMO3 1 OTTHUMG00000133570.3 +27507 chr16 HAVANA gene 67205175 67206849 1675.0 - 0 ENSG00000280163.1 TEC AC040160.2 2 OTTHUMG00000177483.1 +27508 chr16 HAVANA gene 67207139 67227048 2807.0 - 0 ENSG00000125122.15 protein_coding LRRC29 1 OTTHUMG00000154403.3 +27509 chr16 HAVANA gene 67227103 67229278 1787.0 + 0 ENSG00000168701.18 protein_coding TMEM208 1 OTTHUMG00000173064.2 +27510 chr16 HAVANA gene 67229387 67247658 5407.0 - 0 ENSG00000135723.13 protein_coding FHOD1 2 OTTHUMG00000137521.4 +27511 chr16 HAVANA gene 67261108 67263784 2677.0 + 0 ENSG00000262691.1 processed_transcript AC040160.1 2 OTTHUMG00000177484.1 overlapping_locus +27512 chr16 HAVANA gene 67237683 67272190 5419.0 + 0 ENSG00000135740.16 protein_coding SLC9A5 1 OTTHUMG00000172935.3 overlapping_locus +27513 chr16 HAVANA gene 67277510 67289499 7328.0 + 0 ENSG00000196155.12 protein_coding PLEKHG4 1 OTTHUMG00000172936.3 +27514 chr16 ENSEMBL gene 67321658 67321987 330.0 - 0 ENSG00000201201.1 misc_RNA RN7SKP118 3 +27515 chr16 HAVANA gene 67289428 67326763 7383.0 - 0 ENSG00000168676.10 protein_coding KCTD19 1 OTTHUMG00000173075.4 ncRNA_host +27516 chr16 HAVANA gene 67326798 67385203 4017.0 + 0 ENSG00000159708.17 protein_coding LRRC36 1 OTTHUMG00000173030.3 +27517 chr16 ENSEMBL gene 67390691 67390850 160.0 - 0 ENSG00000239194.1 snRNA RNU1-123P 3 +27518 chr16 HAVANA gene 67389809 67393535 2618.0 - 0 ENSG00000159713.10 protein_coding TPPP3 2 OTTHUMG00000137516.3 ncRNA_host +27519 chr16 HAVANA gene 67394152 67416833 3540.0 - 0 ENSG00000159714.11 protein_coding ZDHHC1 2 OTTHUMG00000137522.5 +27520 chr16 HAVANA gene 67430667 67431464 475.0 - 0 ENSG00000261320.1 lincRNA AC009061.1 2 OTTHUMG00000175505.1 +27521 chr16 HAVANA gene 67430652 67437553 2674.0 + 0 ENSG00000176387.6 protein_coding HSD11B2 1 OTTHUMG00000137507.5 +27522 chr16 HAVANA gene 67438014 67481237 8212.0 - 0 ENSG00000159720.11 protein_coding ATP6V0D1 1 OTTHUMG00000137515.6 +27523 chr16 HAVANA gene 67482571 67483813 764.0 - 0 ENSG00000159723.4 protein_coding AGRP 2 OTTHUMG00000137509.1 +27524 chr16 HAVANA gene 67481314 67505063 2770.0 + 0 ENSG00000270049.2 antisense AC009061.2 2 OTTHUMG00000184048.2 +27525 chr16 HAVANA gene 67517862 67528675 883.0 - 0 ENSG00000276075.1 antisense AC027682.6 2 OTTHUMG00000186961.1 +27526 chr16 HAVANA gene 67538557 67540106 530.0 - 0 ENSG00000261396.1 antisense AC027682.5 2 OTTHUMG00000172863.1 +27527 chr16 HAVANA gene 67542304 67542572 207.0 - 0 ENSG00000260894.1 antisense AC027682.3 2 OTTHUMG00000172865.1 overlapping_locus +27528 chr16 HAVANA gene 67542123 67542963 336.0 - 0 ENSG00000259945.1 antisense AC027682.2 2 OTTHUMG00000172864.1 overlapping_locus +27529 chr16 HAVANA gene 67518418 67546788 6729.0 + 0 ENSG00000039523.19 protein_coding RIPOR1 1 OTTHUMG00000137536.8 +27530 chr16 HAVANA gene 67550815 67552935 2121.0 - 0 ENSG00000280214.1 TEC AC027682.7 2 OTTHUMG00000172867.1 overlapping_locus +27531 chr16 HAVANA gene 67561411 67562309 899.0 - 0 ENSG00000259804.1 antisense AC027682.1 2 OTTHUMG00000172888.1 overlapping_locus +27532 chr16 HAVANA gene 67549214 67563958 1184.0 - 0 ENSG00000261386.2 lincRNA AC027682.4 2 OTTHUMG00000172866.2 overlapping_locus +27533 chr16 HAVANA gene 67614381 67616146 1326.0 - 0 ENSG00000237718.2 antisense AC009095.1 2 OTTHUMG00000150496.2 +27534 chr16 HAVANA gene 67562407 67639185 10174.0 + 0 ENSG00000102974.15 protein_coding CTCF 2 OTTHUMG00000137539.6 +27535 chr16 HAVANA gene 67644919 67657569 7699.0 + 0 ENSG00000159753.13 protein_coding CARMIL2 2 OTTHUMG00000184043.2 +27536 chr16 HAVANA gene 67657512 67660815 3223.0 - 0 ENSG00000102977.14 protein_coding ACD 2 OTTHUMG00000137547.7 +27537 chr16 HAVANA gene 67660946 67662778 1488.0 + 0 ENSG00000102981.9 protein_coding PARD6A 2 OTTHUMG00000137534.2 +27538 chr16 HAVANA gene 67662945 67667265 2679.0 - 0 ENSG00000124074.11 protein_coding ENKD1 1 OTTHUMG00000137550.5 +27539 chr16 HAVANA gene 67666816 67668758 1789.0 + 0 ENSG00000159761.14 protein_coding C16orf86 2 OTTHUMG00000150527.4 +27540 chr16 HAVANA gene 67674531 67719421 8674.0 - 0 ENSG00000141098.12 protein_coding GFOD2 2 OTTHUMG00000137537.5 +27541 chr16 HAVANA gene 67738588 67739922 569.0 - 0 ENSG00000270165.1 sense_intronic AC010530.1 2 OTTHUMG00000184045.1 overlapping_locus +27542 chr16 HAVANA gene 67723066 67806652 6460.0 - 0 ENSG00000141084.10 protein_coding RANBP10 2 OTTHUMG00000184044.4 overlapping_locus +27543 chr16 HAVANA gene 67806765 67832148 3852.0 + 0 ENSG00000102904.14 protein_coding TSNAXIP1 1 OTTHUMG00000137545.7 +27544 chr16 HAVANA gene 67842082 67844195 2114.0 + 0 ENSG00000168286.2 protein_coding THAP11 2 OTTHUMG00000137546.1 +27545 chr16 HAVANA gene 67828157 67847811 5539.0 - 0 ENSG00000102901.12 protein_coding CENPT 1 OTTHUMG00000173071.3 +27546 chr16 HAVANA gene 67855955 67856111 157.0 - 0 ENSG00000262141.1 processed_pseudogene AC040162.2 1 OTTHUMG00000177515.1 pseudo_consens +27547 chr16 HAVANA gene 67846732 67872567 3895.0 + 0 ENSG00000102898.11 protein_coding NUTF2 2 OTTHUMG00000137540.6 +27548 chr16 HAVANA gene 67873023 67884503 6173.0 + 0 ENSG00000038358.14 protein_coding EDC4 2 OTTHUMG00000137543.5 overlapping_locus +27549 chr16 HAVANA gene 67882461 67886367 3907.0 + 0 ENSG00000263126.1 lincRNA AC040162.3 2 OTTHUMG00000177492.1 overlapping_locus +27550 chr16 HAVANA gene 67884805 67888855 1052.0 + 0 ENSG00000188038.7 protein_coding NRN1L 2 OTTHUMG00000137541.3 overlapping_locus +27551 chr16 HAVANA gene 67893272 67929678 3977.0 + 0 ENSG00000159792.9 protein_coding PSKH1 2 OTTHUMG00000137548.7 +27552 chr16 HAVANA gene 67927640 67932414 2715.0 - 0 ENSG00000141086.17 protein_coding CTRL 2 OTTHUMG00000137552.6 overlapping_locus +27553 chr16 HAVANA gene 67929614 67936017 5685.0 - 0 ENSG00000261884.2 protein_coding AC040162.1 2 OTTHUMG00000177516.4 overlapping_locus +27554 chr16 HAVANA gene 67934502 67937087 1853.0 - 0 ENSG00000205220.11 protein_coding PSMB10 2 OTTHUMG00000137553.4 overlapping_locus +27555 chr16 HAVANA gene 67939750 67944131 2625.0 - 0 ENSG00000213398.7 protein_coding LCAT 1 OTTHUMG00000137551.5 overlapping_locus +27556 chr16 HAVANA gene 67943474 67969601 8298.0 - 0 ENSG00000124067.16 protein_coding SLC12A4 1 OTTHUMG00000137535.11 overlapping_locus +27557 chr16 HAVANA gene 67975663 67980829 2018.0 - 0 ENSG00000141096.4 protein_coding DPEP3 2 OTTHUMG00000137544.4 +27558 chr16 HAVANA gene 67987394 68000586 3498.0 - 0 ENSG00000167261.13 protein_coding DPEP2 1 OTTHUMG00000137542.5 +27559 chr16 HAVANA gene 68002432 68004952 1504.0 - 0 ENSG00000262962.1 unprocessed_pseudogene KARSP3 1 OTTHUMG00000177459.1 pseudo_consens +27560 chr16 HAVANA gene 68013436 68015911 1185.0 - 0 ENSG00000263201.1 protein_coding DPEP2NB 2 OTTHUMG00000177460.2 +27561 chr16 ENSEMBL gene 68017710 68017817 108.0 - 0 ENSG00000202336.1 snRNA RNU6-359P 3 +27562 chr16 HAVANA gene 68021274 68023442 2169.0 - 0 ENSG00000182810.6 protein_coding DDX28 2 OTTHUMG00000137549.1 retrogene +27563 chr16 HAVANA gene 67987746 68079320 4472.0 + 0 ENSG00000167264.17 protein_coding DUS2 2 OTTHUMG00000137538.7 overlapping_locus +27564 chr16 ENSEMBL gene 68089449 68089543 95.0 - 0 ENSG00000201850.1 misc_RNA RF00019 3 +27565 chr16 HAVANA gene 68077340 68122271 549.0 + 0 ENSG00000261864.1 processed_transcript AC130462.1 2 OTTHUMG00000177442.1 overlapping_locus +27566 chr16 ENSEMBL gene 68189287 68189421 135.0 + 0 ENSG00000212445.1 snoRNA RF00554 3 +27567 chr16 HAVANA gene 68199841 68200981 1141.0 - 0 ENSG00000279621.1 TEC AC020978.8 2 OTTHUMG00000177444.1 +27568 chr16 HAVANA gene 68199795 68200981 1187.0 + 0 ENSG00000262514.1 sense_intronic AC020978.6 2 OTTHUMG00000177995.1 overlapping_locus +27569 chr16 HAVANA gene 68209442 68209778 337.0 + 0 ENSG00000240435.2 processed_pseudogene RPS12P27 1 OTTHUMG00000158181.2 pseudo_consens,overlapping_locus +27570 chr16 HAVANA gene 68212401 68221671 460.0 - 0 ENSG00000260891.1 antisense AC020978.3 2 OTTHUMG00000176599.1 +27571 chr16 HAVANA gene 68224713 68227734 3022.0 + 0 ENSG00000263276.1 sense_overlapping AC020978.7 2 OTTHUMG00000177996.1 overlapping_locus +27572 chr16 HAVANA gene 68225969 68229145 3177.0 - 0 ENSG00000262160.1 antisense AC020978.5 2 OTTHUMG00000177997.1 overlapping_locus +27573 chr16 HAVANA gene 68084751 68229259 8806.0 + 0 ENSG00000072736.18 protein_coding NFATC3 1 OTTHUMG00000137555.6 ncRNA_host,overlapping_locus +27574 chr16 ENSEMBL gene 68233426 68233499 74.0 - 0 ENSG00000284259.1 miRNA MIR6773 3 +27575 chr16 HAVANA gene 68236845 68237667 533.0 - 0 ENSG00000261469.1 sense_intronic AC020978.4 2 OTTHUMG00000176679.1 overlapping_locus +27576 chr16 HAVANA gene 68229111 68238102 5563.0 - 0 ENSG00000103067.13 protein_coding ESRP2 2 OTTHUMG00000137557.8 ncRNA_host,overlapping_locus +27577 chr16 HAVANA gene 68256162 68260443 490.0 - 0 ENSG00000260441.5 antisense AC020978.2 2 OTTHUMG00000176680.1 +27578 chr16 HAVANA gene 68245304 68261062 4464.0 + 0 ENSG00000103066.12 protein_coding PLA2G15 1 OTTHUMG00000137554.8 +27579 chr16 ENSEMBL gene 68284223 68284318 96.0 - 0 ENSG00000252026.1 snRNA RNU6-1262P 3 +27580 chr16 HAVANA gene 68290087 68292790 2704.0 - 0 ENSG00000279649.1 TEC AC020978.9 2 OTTHUMG00000177438.1 overlapping_locus +27581 chr16 HAVANA gene 68264516 68301823 7588.0 + 0 ENSG00000103064.14 protein_coding SLC7A6 2 OTTHUMG00000176544.13 +27582 chr16 HAVANA gene 68284503 68310946 5229.0 - 0 ENSG00000103061.12 protein_coding SLC7A6OS 2 OTTHUMG00000137558.13 overlapping_locus +27583 chr16 HAVANA gene 68316801 68319036 428.0 + 0 ENSG00000259797.1 sense_intronic AC020978.1 2 OTTHUMG00000176429.1 overlapping_locus +27584 chr16 ENSEMBL gene 68329387 68329529 143.0 - 0 ENSG00000222177.1 snRNA RNU4-30P 3 +27585 chr16 HAVANA gene 68310974 68358563 9458.0 + 0 ENSG00000132600.16 protein_coding PRMT7 1 OTTHUMG00000137556.7 overlapping_locus +27586 chr16 HAVANA gene 68367325 68370262 2938.0 - 0 ENSG00000279693.1 TEC AC099521.2 2 OTTHUMG00000177439.1 overlapping_locus +27587 chr16 HAVANA gene 68358325 68448688 7166.0 - 0 ENSG00000103056.11 protein_coding SMPD3 1 OTTHUMG00000137559.9 overlapping_locus +27588 chr16 HAVANA gene 68450283 68452318 2036.0 + 0 ENSG00000274698.1 lincRNA AC099521.1 2 OTTHUMG00000177998.2 overlapping_locus +27589 chr16 ENSEMBL gene 68474553 68474664 112.0 - 0 ENSG00000199263.1 misc_RNA RF00019 3 +27590 chr16 HAVANA gene 68477237 68477570 334.0 - 0 ENSG00000241334.2 processed_pseudogene RPL35AP33 1 OTTHUMG00000158185.3 pseudo_consens +27591 chr16 ENSEMBL gene 68535515 68535658 144.0 + 0 ENSG00000201164.1 snRNA RNU4-36P 3 +27592 chr16 HAVANA gene 68530090 68576072 7015.0 + 0 ENSG00000184939.15 protein_coding ZFP90 1 OTTHUMG00000177312.8 ncRNA_host +27593 chr16 HAVANA gene 68573782 68589512 547.0 - 0 ENSG00000260084.1 antisense AC126773.1 2 OTTHUMG00000176784.1 +27594 chr16 HAVANA gene 68591382 68594424 3043.0 + 0 ENSG00000275383.1 lincRNA AC126773.4 2 OTTHUMG00000177420.1 +27595 chr16 ENSEMBL gene 68630223 68630354 132.0 - 0 ENSG00000252040.1 snoRNA RF01233 3 +27596 chr16 ENSEMBL gene 68630851 68630968 118.0 - 0 ENSG00000252640.1 snoRNA RF01233 3 +27597 chr16 HAVANA gene 68644248 68646168 1682.0 - 0 ENSG00000260577.2 antisense AC126773.2 2 OTTHUMG00000176785.2 +27598 chr16 HAVANA gene 68651056 68651948 893.0 - 0 ENSG00000260860.2 processed_pseudogene AC126773.3 1 OTTHUMG00000176786.3 pseudo_consens +27599 chr16 HAVANA gene 68686399 68686670 272.0 + 0 ENSG00000261395.3 transcribed_processed_pseudogene HSPE1P5 1 OTTHUMG00000176787.3 pseudo_consens,overlapping_locus +27600 chr16 HAVANA gene 68636189 68722616 6236.0 + 0 ENSG00000062038.13 protein_coding CDH3 2 OTTHUMG00000137560.7 overlapping_locus +27601 chr16 ENSEMBL gene 68742480 68742588 109.0 + 0 ENSG00000200558.1 rRNA_pseudogene RNA5SP429 3 +27602 chr16 HAVANA gene 68822587 68823070 484.0 + 0 ENSG00000260459.2 processed_pseudogene FTLP14 1 OTTHUMG00000176777.2 pseudo_consens,overlapping_locus +27603 chr16 HAVANA gene 68814330 68823526 562.0 - 0 ENSG00000260798.1 antisense AC099314.1 2 OTTHUMG00000176776.1 +27604 chr16 HAVANA gene 68737225 68835548 6177.0 + 0 ENSG00000039068.18 protein_coding CDH1 2 OTTHUMG00000137561.5 overlapping_locus +27605 chr16 ENSEMBL gene 68885576 68885677 102.0 - 0 ENSG00000199979.1 misc_RNA RF00019 3 +27606 chr16 ENSEMBL gene 68926894 68926957 64.0 - 0 ENSG00000275504.1 snRNA RF00066 3 +27607 chr16 HAVANA gene 68933820 68937725 641.0 + 0 ENSG00000266801.1 sense_intronic AC009137.2 2 OTTHUMG00000178337.1 overlapping_locus +27608 chr16 HAVANA gene 68927547 68948261 260.0 - 0 ENSG00000260999.1 lincRNA AC009137.1 2 OTTHUMG00000176788.1 +27609 chr16 ENSEMBL gene 69007052 69007155 104.0 - 0 ENSG00000202497.1 snRNA RNU6-898P 3 +27610 chr16 HAVANA gene 69025860 69026643 479.0 - 0 ENSG00000271129.1 processed_pseudogene AC009027.1 1 OTTHUMG00000184816.1 pseudo_consens +27611 chr16 HAVANA gene 69033675 69036042 2368.0 + 0 ENSG00000244378.1 transcribed_processed_pseudogene RPS2P45 1 OTTHUMG00000158195.4 pseudo_consens,overlapping_locus +27612 chr16 HAVANA gene 68843604 69085180 6839.0 + 0 ENSG00000103047.7 protein_coding TANGO6 1 OTTHUMG00000176743.3 overlapping_locus +27613 chr16 HAVANA gene 69105564 69118719 5289.0 + 0 ENSG00000103044.10 protein_coding HAS3 2 OTTHUMG00000137562.3 +27614 chr16 HAVANA gene 69118010 69132584 3383.0 - 0 ENSG00000168802.12 protein_coding CHTF8 1 OTTHUMG00000163909.8 overlapping_locus +27615 chr16 ENSEMBL gene 69175671 69175777 107.0 - 0 ENSG00000207083.1 snRNA RNU6-22P 3 +27616 chr16 ENSEMBL gene 69191123 69191223 101.0 + 0 ENSG00000200164.1 misc_RNA RF00019 3 +27617 chr16 HAVANA gene 69131291 69231130 5681.0 + 0 ENSG00000141076.17 protein_coding UTP4 1 OTTHUMG00000137570.6 ncRNA_host,overlapping_locus +27618 chr16 HAVANA gene 69240549 69241929 428.0 + 0 ENSG00000265113.1 sense_intronic AC026474.1 2 OTTHUMG00000178338.1 overlapping_locus +27619 chr16 HAVANA gene 69187129 69309052 9875.0 + 0 ENSG00000168807.16 protein_coding SNTB2 1 OTTHUMG00000137567.6 ncRNA_host,overlapping_locus +27620 chr16 HAVANA gene 69299682 69322700 1284.0 + 0 ENSG00000260914.3 protein_coding AC026464.4 2 OTTHUMG00000186022.3 overlapping_locus +27621 chr16 HAVANA gene 69311356 69326939 5670.0 + 0 ENSG00000132612.15 protein_coding VPS4A 1 OTTHUMG00000175589.5 overlapping_locus +27622 chr16 HAVANA gene 69328621 69330595 1158.0 - 0 ENSG00000258429.1 protein_coding PDF 2 OTTHUMG00000171336.1 overlapping_locus +27623 chr16 HAVANA gene 69328644 69334871 887.0 - 0 ENSG00000272617.3 protein_coding AC026464.6 2 OTTHUMG00000186023.2 overlapping_locus +27624 chr16 HAVANA gene 69320140 69339667 7450.0 - 0 ENSG00000213380.15 protein_coding COG8 2 OTTHUMG00000154277.7 overlapping_locus +27625 chr16 HAVANA gene 69337996 69343111 4749.0 + 0 ENSG00000132603.14 protein_coding NIP7 2 OTTHUMG00000137568.7 +27626 chr16 HAVANA gene 69335276 69351730 747.0 - 0 ENSG00000259900.5 protein_coding AC026464.1 2 OTTHUMG00000175592.2 overlapping_locus +27627 chr16 HAVANA gene 69343248 69351809 1411.0 - 0 ENSG00000157315.4 protein_coding TMED6 2 OTTHUMG00000137571.2 overlapping_locus +27628 chr16 HAVANA gene 69335091 69356306 564.0 - 0 ENSG00000260371.1 protein_coding AC026464.3 2 OTTHUMG00000176072.2 overlapping_locus +27629 chr16 HAVANA gene 69355561 69408571 5621.0 - 0 ENSG00000132604.10 protein_coding TERF2 1 OTTHUMG00000137566.8 overlapping_locus +27630 chr16 HAVANA gene 69443240 69444290 722.0 - 0 ENSG00000261527.1 processed_pseudogene AC026464.5 1 OTTHUMG00000176073.1 pseudo_consens +27631 chr16 HAVANA gene 69463844 69466264 2421.0 + 0 ENSG00000260108.1 3prime_overlapping_ncRNA AC026464.2 2 OTTHUMG00000176778.1 overlapping_locus +27632 chr16 HAVANA gene 69424525 69466266 6903.0 + 0 ENSG00000103018.16 protein_coding CYB5B 2 OTTHUMG00000133020.5 overlapping_locus +27633 chr16 ENSEMBL gene 69565808 69565868 61.0 - 0 ENSG00000223109.1 miRNA MIR1538 3 +27634 chr16 HAVANA gene 69632141 69632571 431.0 + 0 ENSG00000274093.1 sense_intronic AC009032.1 2 OTTHUMG00000186978.1 overlapping_locus +27635 chr16 HAVANA gene 69703065 69704652 1588.0 + 0 ENSG00000260772.1 3prime_overlapping_ncRNA AC012321.1 2 OTTHUMG00000176834.1 overlapping_locus +27636 chr16 HAVANA gene 69565094 69704666 16401.0 + 0 ENSG00000102908.20 protein_coding NFAT5 2 OTTHUMG00000137572.4 overlapping_locus +27637 chr16 HAVANA gene 69709874 69710583 575.0 + 0 ENSG00000261602.1 antisense AC092115.2 2 OTTHUMG00000176835.1 +27638 chr16 HAVANA gene 69706996 69726951 3254.0 - 0 ENSG00000181019.12 protein_coding NQO1 1 OTTHUMG00000137575.2 +27639 chr16 HAVANA gene 69727013 69742563 592.0 + 0 ENSG00000262136.1 antisense AC092115.3 2 OTTHUMG00000177608.1 +27640 chr16 HAVANA gene 69741867 69754940 2119.0 - 0 ENSG00000141101.12 protein_coding NOB1 2 OTTHUMG00000137576.3 +27641 chr16 HAVANA gene 69756536 69757937 1402.0 - 0 ENSG00000260290.2 processed_pseudogene AC092115.1 1 OTTHUMG00000176836.2 pseudo_consens +27642 chr16 ENSEMBL gene 69785994 69786113 120.0 - 0 ENSG00000252443.1 snoRNA RF00091 3 +27643 chr16 ENSEMBL gene 69933081 69933180 100.0 + 0 ENSG00000208017.3 miRNA MIR140 3 +27644 chr16 HAVANA gene 69762306 69941741 9015.0 + 0 ENSG00000198373.12 protein_coding WWP2 2 OTTHUMG00000137573.3 ncRNA_host +27645 chr16 HAVANA gene 69950705 69964452 6140.0 + 0 ENSG00000157322.17 protein_coding CLEC18A 2 OTTHUMG00000137574.4 +27646 chr16 HAVANA gene 69975238 69975344 107.0 + 0 ENSG00000277003.1 unprocessed_pseudogene AC026468.1 2 OTTHUMG00000187979.1 +27647 chr16 HAVANA gene 69976388 69996188 1728.0 - 0 ENSG00000226232.8 transcribed_unprocessed_pseudogene NPIPB14P 1 OTTHUMG00000167594.4 overlapping_locus +27648 chr16 ENSEMBL gene 70030346 70030422 77.0 + 0 ENSG00000239118.1 miRNA MIR1972-2 3 +27649 chr16 HAVANA gene 70010751 70065945 2707.0 - 0 ENSG00000255185.5 transcribed_unprocessed_pseudogene PDXDC2P 2 OTTHUMG00000167595.1 overlapping_locus +27650 chr16 HAVANA gene 69976297 70065948 6114.0 - 0 ENSG00000196696.12 processed_transcript PDXDC2P-NPIPB14P 2 OTTHUMG00000167593.2 overlapping_locus +27651 chr16 HAVANA gene 70079129 70079624 496.0 - 0 ENSG00000241183.1 processed_pseudogene AC009022.1 1 OTTHUMG00000158241.1 pseudo_consens +27652 chr16 HAVANA gene 70113626 70162537 10385.0 + 0 ENSG00000090857.13 protein_coding PDPR 2 OTTHUMG00000176963.4 +27653 chr16 HAVANA gene 70156340 70173448 2492.0 - 0 ENSG00000247228.2 antisense AC009060.1 2 OTTHUMG00000176981.2 +27654 chr16 HAVANA gene 70173322 70187361 4894.0 + 0 ENSG00000157335.20 protein_coding CLEC18C 2 OTTHUMG00000176982.4 +27655 chr16 HAVANA gene 70202354 70202459 106.0 + 0 ENSG00000261145.1 processed_pseudogene AC009060.2 2 OTTHUMG00000177040.1 +27656 chr16 HAVANA gene 70219574 70246610 4433.0 - 0 ENSG00000261556.9 transcribed_unprocessed_pseudogene SMG1P7 2 OTTHUMG00000177041.5 +27657 chr16 HAVANA gene 70246778 70251930 5153.0 - 0 ENSG00000223496.2 protein_coding EXOSC6 2 OTTHUMG00000137578.1 retrogene +27658 chr16 ENSEMBL gene 70276069 70276352 284.0 + 0 ENSG00000265648.2 misc_RNA RN7SL279P 3 +27659 chr16 HAVANA gene 70252295 70289543 4498.0 - 0 ENSG00000090861.15 protein_coding AARS 1 OTTHUMG00000177042.7 +27660 chr16 HAVANA gene 70289663 70335283 4522.0 + 0 ENSG00000157349.16 protein_coding DDX19B 2 OTTHUMG00000137577.6 overlapping_locus +27661 chr16 HAVANA gene 70315640 70346747 1508.0 - 0 ENSG00000261777.5 processed_transcript AC012184.3 2 OTTHUMG00000177044.1 +27662 chr16 HAVANA gene 70349085 70372166 1193.0 - 0 ENSG00000285710.1 antisense AC012184.4 2 OTTHUMG00000193093.1 +27663 chr16 HAVANA gene 70299194 70372582 2587.0 + 0 ENSG00000260537.2 protein_coding AC012184.2 2 OTTHUMG00000177063.3 overlapping_locus +27664 chr16 HAVANA gene 70346829 70373383 7879.0 + 0 ENSG00000168872.16 protein_coding DDX19A 1 OTTHUMG00000137579.5 overlapping_locus +27665 chr16 HAVANA gene 70379457 70399502 590.0 + 0 ENSG00000260111.1 antisense AC012184.1 2 OTTHUMG00000177066.1 +27666 chr16 HAVANA gene 70375978 70439237 9744.0 - 0 ENSG00000157350.12 protein_coding ST3GAL2 2 OTTHUMG00000137580.5 +27667 chr16 HAVANA gene 70444674 70444912 239.0 - 0 ENSG00000240043.1 processed_pseudogene RPS27P26 1 OTTHUMG00000158243.1 pseudo_consens +27668 chr16 ENSEMBL gene 70445293 70445399 107.0 - 0 ENSG00000200153.1 snRNA RNU6-23P 3 +27669 chr16 HAVANA gene 70454421 70480274 7405.0 + 0 ENSG00000157353.16 protein_coding FUK 1 OTTHUMG00000074085.4 +27670 chr16 HAVANA gene 70480568 70523565 4786.0 - 0 ENSG00000103051.18 protein_coding COG4 2 OTTHUMG00000128515.9 +27671 chr16 ENSEMBL gene 70529509 70529588 80.0 + 0 ENSG00000221514.1 snoRNA SNORD111B 3 +27672 chr16 ENSEMBL gene 70538005 70538098 94.0 + 0 ENSG00000221066.1 snoRNA SNORD111 3 +27673 chr16 HAVANA gene 70523788 70577670 12419.0 + 0 ENSG00000189091.12 protein_coding SF3B3 1 OTTHUMG00000137582.7 ncRNA_host +27674 chr16 HAVANA gene 70579895 70660682 2233.0 + 0 ENSG00000157368.10 protein_coding IL34 1 OTTHUMG00000137581.5 +27675 chr16 HAVANA gene 70661667 70665836 4170.0 + 0 ENSG00000279569.1 TEC AC020763.4 2 OTTHUMG00000177024.1 +27676 chr16 HAVANA gene 70661204 70686066 4999.0 - 0 ENSG00000132613.14 protein_coding MTSS1L 1 OTTHUMG00000177023.4 +27677 chr16 HAVANA gene 70713987 70716890 2904.0 + 0 ENSG00000279412.1 TEC AC020763.3 2 OTTHUMG00000177025.1 +27678 chr16 HAVANA gene 70747057 70747926 551.0 + 0 ENSG00000260156.1 antisense AC020763.1 2 OTTHUMG00000177026.1 +27679 chr16 HAVANA gene 70768356 70768785 430.0 + 0 ENSG00000279815.1 TEC AC020763.5 2 OTTHUMG00000184090.1 overlapping_locus +27680 chr16 HAVANA gene 70768967 70770221 1255.0 - 0 ENSG00000279122.1 TEC AC020763.2 2 OTTHUMG00000177028.1 overlapping_locus +27681 chr16 HAVANA gene 70755098 70773251 4853.0 + 0 ENSG00000214353.7 antisense VAC14-AS1 2 OTTHUMG00000177027.2 overlapping_locus +27682 chr16 HAVANA gene 70778433 70779145 713.0 + 0 ENSG00000279123.1 TEC AC027281.2 2 OTTHUMG00000178083.1 +27683 chr16 HAVANA gene 70687439 70801161 8276.0 - 0 ENSG00000103043.14 protein_coding VAC14 1 OTTHUMG00000137583.8 overlapping_locus +27684 chr16 HAVANA gene 70802083 70802840 758.0 - 0 ENSG00000262890.1 lincRNA AC027281.1 2 OTTHUMG00000178084.2 +27685 chr16 ENSEMBL gene 70852698 70852814 117.0 + 0 ENSG00000221725.1 snRNA RNU6ATAC25P 3 +27686 chr16 HAVANA gene 71080866 71093667 666.0 + 0 ENSG00000259833.5 antisense AC138625.2 2 OTTHUMG00000177000.1 +27687 chr16 HAVANA gene 71113352 71114000 483.0 + 0 ENSG00000259798.1 antisense AC138625.1 2 OTTHUMG00000177001.1 +27688 chr16 HAVANA gene 70807378 71230722 23408.0 - 0 ENSG00000157423.17 protein_coding HYDIN 1 OTTHUMG00000137584.13 +27689 chr16 HAVANA gene 71281389 71289715 7582.0 - 0 ENSG00000180917.17 protein_coding CMTR2 2 OTTHUMG00000137587.3 +27690 chr16 HAVANA gene 71301583 71302869 434.0 + 0 ENSG00000261260.1 lincRNA AC106736.1 2 OTTHUMG00000176794.1 +27691 chr16 HAVANA gene 71358713 71390438 1703.0 + 0 ENSG00000172137.18 protein_coding CALB2 2 OTTHUMG00000137589.6 +27692 chr16 HAVANA gene 71420483 71421518 333.0 + 0 ENSG00000262120.1 unprocessed_pseudogene AC010547.6 1 OTTHUMG00000177576.1 pseudo_consens +27693 chr16 HAVANA gene 71410440 71426464 530.0 - 0 ENSG00000261348.1 lincRNA LINC02136 2 OTTHUMG00000176795.1 +27694 chr16 HAVANA gene 71430262 71442060 1514.0 - 0 ENSG00000260734.5 protein_coding TLE7 2 OTTHUMG00000176796.5 +27695 chr16 HAVANA gene 71443055 71443856 193.0 - 0 ENSG00000262008.1 unprocessed_pseudogene AC010547.5 2 OTTHUMG00000177577.1 +27696 chr16 HAVANA gene 71447597 71463095 7287.0 - 0 ENSG00000167377.18 protein_coding ZNF23 2 OTTHUMG00000176797.40 overlapping_locus +27697 chr16 HAVANA gene 71462278 71465941 2793.0 + 0 ENSG00000247324.2 antisense AC010547.1 2 OTTHUMG00000176798.1 +27698 chr16 HAVANA gene 71447600 71489311 3677.0 - 0 ENSG00000261611.6 protein_coding AC010547.4 2 OTTHUMG00000137588.41 overlapping_locus +27699 chr16 HAVANA gene 71513863 71517849 440.0 + 0 ENSG00000260520.1 antisense AC010547.3 2 OTTHUMG00000176864.1 +27700 chr16 HAVANA gene 71525233 71538746 2669.0 + 0 ENSG00000140835.9 protein_coding CHST4 2 OTTHUMG00000137592.4 +27701 chr16 HAVANA gene 71539834 71541825 409.0 - 0 ENSG00000260015.1 sense_intronic AC010547.2 2 OTTHUMG00000176865.1 overlapping_locus +27702 chr16 ENSEMBL gene 71563430 71563528 99.0 - 0 ENSG00000252339.1 snRNA RNU6-1061P 3 +27703 chr16 HAVANA gene 71464555 71565089 9225.0 - 0 ENSG00000157429.15 protein_coding ZNF19 1 OTTHUMG00000137593.9 ncRNA_host,overlapping_locus +27704 chr16 HAVANA gene 71565660 71577130 5407.0 - 0 ENSG00000198650.10 protein_coding TAT 2 OTTHUMG00000137590.3 +27705 chr16 HAVANA gene 71565789 71578187 873.0 + 0 ENSG00000260886.1 antisense TAT-AS1 2 OTTHUMG00000176800.1 +27706 chr16 HAVANA gene 71623708 71626816 465.0 - 0 ENSG00000260593.1 antisense AC009097.2 2 OTTHUMG00000176866.1 +27707 chr16 HAVANA gene 71626161 71642114 6446.0 + 0 ENSG00000140832.9 protein_coding MARVELD3 2 OTTHUMG00000137591.3 +27708 chr16 HAVANA gene 71655027 71664212 406.0 + 0 ENSG00000260185.1 antisense AC009097.1 2 OTTHUMG00000176868.1 +27709 chr16 ENSEMBL gene 71666091 71666197 107.0 + 0 ENSG00000199301.1 snRNA RNU6-208P 3 +27710 chr16 ENSEMBL gene 71698567 71698701 135.0 - 0 ENSG00000263666.1 snoRNA SNORA70D 3 +27711 chr16 HAVANA gene 71723180 71724230 777.0 + 0 ENSG00000261513.1 antisense AC009097.4 2 OTTHUMG00000176869.1 +27712 chr16 HAVANA gene 71637835 71724701 12493.0 - 0 ENSG00000040199.18 protein_coding PHLPP2 1 OTTHUMG00000176867.2 ncRNA_host +27713 chr16 HAVANA gene 71726975 71727992 1018.0 + 0 ENSG00000260612.1 lincRNA AC009097.3 2 OTTHUMG00000176870.1 +27714 chr16 ENSEMBL gene 71758402 71758487 86.0 - 0 ENSG00000223224.1 snoRNA SNORD71 3 +27715 chr16 HAVANA gene 71777603 71777834 232.0 - 0 ENSG00000283057.1 processed_pseudogene AC010653.3 2 OTTHUMG00000191502.1 +27716 chr16 HAVANA gene 71729000 71809201 10980.0 - 0 ENSG00000166747.12 protein_coding AP1G1 1 OTTHUMG00000176871.5 ncRNA_host +27717 chr16 HAVANA gene 71833787 71835932 881.0 + 0 ENSG00000262140.1 unprocessed_pseudogene AC010653.1 1 OTTHUMG00000178090.1 pseudo_consens +27718 chr16 HAVANA gene 71859680 71860676 997.0 + 0 ENSG00000279592.1 TEC AC010653.2 2 OTTHUMG00000178091.1 overlapping_locus +27719 chr16 HAVANA gene 71881553 71882273 426.0 - 0 ENSG00000261765.1 sense_intronic AC009127.1 2 OTTHUMG00000176875.1 overlapping_locus +27720 chr16 HAVANA gene 71845991 71885268 8542.0 + 0 ENSG00000224470.7 protein_coding ATXN1L 2 OTTHUMG00000176872.3 overlapping_locus +27721 chr16 HAVANA gene 71859680 71895336 3402.0 - 0 ENSG00000102984.14 protein_coding ZNF821 2 OTTHUMG00000176874.3 overlapping_locus +27722 chr16 HAVANA gene 71845996 71931199 7806.0 + 0 ENSG00000182149.20 protein_coding IST1 1 OTTHUMG00000137597.8 overlapping_locus +27723 chr16 HAVANA gene 71991151 71991305 155.0 - 0 ENSG00000242176.1 processed_pseudogene RPL39P31 1 OTTHUMG00000158246.1 pseudo_consens,overlapping_locus +27724 chr16 HAVANA gene 71929538 71999978 5199.0 - 0 ENSG00000277481.1 protein_coding PKD1L3 2 OTTHUMG00000166114.5 overlapping_locus +27725 chr16 HAVANA gene 72004239 72004803 403.0 - 0 ENSG00000263311.1 unprocessed_pseudogene AC009127.2 1 OTTHUMG00000178101.1 pseudo_consens +27726 chr16 HAVANA gene 72005037 72006543 1507.0 - 0 ENSG00000263232.2 processed_pseudogene ATP5F1AP3 1 OTTHUMG00000178102.2 pseudo_consens +27727 chr16 HAVANA gene 72008588 72027664 6921.0 + 0 ENSG00000102967.11 protein_coding DHODH 1 OTTHUMG00000178093.5 +27728 chr16 HAVANA gene 72054592 72061055 5405.0 + 0 ENSG00000257017.8 protein_coding HP 2 OTTHUMG00000173009.6 +27729 chr16 HAVANA gene 72063148 72077246 1924.0 + 0 ENSG00000261701.7 protein_coding HPR 2 OTTHUMG00000173010.4 +27730 chr16 HAVANA gene 72084857 72087443 369.0 + 0 ENSG00000260252.1 antisense AC009087.1 2 OTTHUMG00000173454.1 +27731 chr16 HAVANA gene 72044289 72094431 3170.0 - 0 ENSG00000140830.8 protein_coding TXNL4B 2 OTTHUMG00000173453.2 +27732 chr16 HAVANA gene 72093562 72112912 6361.0 + 0 ENSG00000140829.11 protein_coding DHX38 2 OTTHUMG00000137596.6 +27733 chr16 HAVANA gene 72112157 72176878 5691.0 - 0 ENSG00000118557.15 protein_coding PMFBP1 1 OTTHUMG00000167827.4 +27734 chr16 HAVANA gene 72224565 72225144 391.0 - 0 ENSG00000261673.1 lincRNA AC009075.1 2 OTTHUMG00000173455.1 +27735 chr16 HAVANA gene 72278268 72278568 301.0 + 0 ENSG00000261774.1 processed_pseudogene AC009075.2 1 OTTHUMG00000173456.1 pseudo_consens +27736 chr16 ENSEMBL gene 72376704 72376760 57.0 + 0 ENSG00000283564.1 snRNA RF00026 3 +27737 chr16 HAVANA gene 72425948 72533892 5253.0 + 0 ENSG00000260664.2 lincRNA AC004158.1 2 OTTHUMG00000173458.2 +27738 chr16 HAVANA gene 72283301 72665009 4752.0 - 0 ENSG00000261008.6 lincRNA LINC01572 2 OTTHUMG00000173457.3 +27739 chr16 ENSEMBL gene 72673503 72673564 62.0 + 0 ENSG00000238731.1 snRNA RNU7-90P 3 +27740 chr16 HAVANA gene 72728616 72729894 1279.0 + 0 ENSG00000261764.1 transcribed_processed_pseudogene KRT18P18 1 OTTHUMG00000173050.1 pseudo_consens,overlapping_locus +27741 chr16 HAVANA gene 72772673 72773272 600.0 + 0 ENSG00000279206.1 lincRNA AC004943.3 2 OTTHUMG00000173051.2 +27742 chr16 HAVANA gene 72665170 72791624 4842.0 + 0 ENSG00000259768.5 antisense AC004943.2 2 OTTHUMG00000172559.5 ncRNA_host,overlapping_locus +27743 chr16 HAVANA gene 72805998 72809872 1697.0 + 0 ENSG00000259209.3 antisense AC004943.1 2 OTTHUMG00000172560.4 +27744 chr16 ENSEMBL gene 72821933 72821992 60.0 - 0 ENSG00000251868.1 snRNA RNU7-71P 3 +27745 chr16 HAVANA gene 72973374 72973832 459.0 - 0 ENSG00000279757.1 TEC AC132068.1 2 OTTHUMG00000178105.1 overlapping_locus +27746 chr16 HAVANA gene 73005601 73006141 541.0 - 0 ENSG00000280092.1 TEC AC002044.3 2 OTTHUMG00000178106.1 overlapping_locus +27747 chr16 HAVANA gene 73014319 73014476 158.0 - 0 ENSG00000272330.1 sense_intronic AC002044.1 2 OTTHUMG00000185614.1 overlapping_locus +27748 chr16 HAVANA gene 73015047 73016016 970.0 - 0 ENSG00000279591.1 TEC AC002044.2 2 OTTHUMG00000178108.1 overlapping_locus +27749 chr16 HAVANA gene 73060245 73062316 2072.0 + 0 ENSG00000271009.3 lincRNA AC116667.1 2 OTTHUMG00000185615.2 overlapping_locus +27750 chr16 HAVANA gene 73092349 73099337 2705.0 + 0 ENSG00000260880.4 processed_transcript HCCAT5 2 OTTHUMG00000172964.4 +27751 chr16 HAVANA gene 73123296 73137580 823.0 + 0 ENSG00000284675.1 lincRNA AC116667.2 2 OTTHUMG00000192276.1 +27752 chr16 HAVANA gene 73232055 73233970 1141.0 + 0 ENSG00000261227.2 lincRNA AC140912.1 2 OTTHUMG00000172965.2 +27753 chr16 HAVANA gene 73293866 73294296 431.0 - 0 ENSG00000279120.1 TEC AC009033.1 2 OTTHUMG00000176219.2 +27754 chr16 HAVANA gene 73386805 73504954 6350.0 + 0 ENSG00000258779.7 lincRNA LINC01568 2 OTTHUMG00000170832.3 +27755 chr16 HAVANA gene 73543941 73558522 532.0 + 0 ENSG00000260848.1 lincRNA AC092114.1 2 OTTHUMG00000177075.1 +27756 chr16 HAVANA gene 73794079 73809733 952.0 + 0 ENSG00000283457.1 lincRNA AC087565.2 2 OTTHUMG00000191799.1 +27757 chr16 HAVANA gene 73812621 73816053 391.0 + 0 ENSG00000259817.2 lincRNA AC087565.1 2 OTTHUMG00000177076.2 +27758 chr16 HAVANA gene 72782885 73891871 22594.0 - 0 ENSG00000140836.16 protein_coding ZFHX3 2 OTTHUMG00000137599.6 ncRNA_host +27759 chr16 HAVANA gene 73940639 73941781 1143.0 - 0 ENSG00000284670.1 translated_processed_pseudogene AC092128.1 1 OTTHUMG00000158247.3 pseudo_consens +27760 chr16 HAVANA gene 74053365 74053965 601.0 + 0 ENSG00000279420.1 TEC AC138627.2 2 OTTHUMG00000177077.1 +27761 chr16 HAVANA gene 74150520 74151299 780.0 + 0 ENSG00000279100.1 TEC AC009120.6 2 OTTHUMG00000177078.1 +27762 chr16 HAVANA gene 74220929 74221427 499.0 + 0 ENSG00000260471.1 processed_pseudogene PPIAP49 1 OTTHUMG00000177079.1 pseudo_consens +27763 chr16 HAVANA gene 74282415 74287519 475.0 + 0 ENSG00000261248.1 lincRNA AC009120.4 2 OTTHUMG00000177080.1 +27764 chr16 HAVANA gene 74289593 74291052 1460.0 - 0 ENSG00000275236.1 lincRNA AC009120.5 2 OTTHUMG00000186984.2 overlapping_locus +27765 chr16 HAVANA gene 73943078 74296762 7473.0 - 0 ENSG00000261404.7 lincRNA AC138627.1 2 OTTHUMG00000176255.4 overlapping_locus +27766 chr16 HAVANA gene 74296775 74306288 2740.0 + 0 ENSG00000103035.10 protein_coding PSMD7 2 OTTHUMG00000137601.3 +27767 chr16 HAVANA gene 74312609 74313390 473.0 - 0 ENSG00000239763.2 processed_pseudogene AC009120.1 1 OTTHUMG00000158253.2 pseudo_consens,overlapping_locus +27768 chr16 HAVANA gene 74313337 74315634 513.0 + 0 ENSG00000260884.1 lincRNA AC009120.3 2 OTTHUMG00000176994.1 +27769 chr16 HAVANA gene 74305127 74335346 3297.0 - 0 ENSG00000259972.2 processed_transcript AC009120.2 2 OTTHUMG00000176993.3 overlapping_locus +27770 chr16 HAVANA gene 74332402 74368240 3828.0 - 0 ENSG00000214331.8 transcribed_unprocessed_pseudogene AC009053.1 2 OTTHUMG00000176996.2 overlapping_locus +27771 chr16 HAVANA gene 74367462 74369826 2365.0 + 0 ENSG00000261079.1 lincRNA AC009053.2 2 OTTHUMG00000176997.1 +27772 chr16 HAVANA gene 74377878 74392080 1702.0 + 0 ENSG00000196436.8 protein_coding NPIPB15 1 OTTHUMG00000156916.5 +27773 chr16 HAVANA gene 74393076 74393183 108.0 - 0 ENSG00000276822.1 unprocessed_pseudogene AC009053.4 2 OTTHUMG00000187988.1 +27774 chr16 HAVANA gene 74408270 74421953 3143.0 - 0 ENSG00000140839.11 protein_coding CLEC18B 2 OTTHUMG00000176998.3 +27775 chr16 HAVANA gene 74422120 74435254 665.0 + 0 ENSG00000261170.1 antisense AC009053.3 1 OTTHUMG00000177173.1 +27776 chr16 ENSEMBL gene 74456541 74456611 71.0 + 0 ENSG00000251794.1 snRNA RNU6-237P 3 +27777 chr16 ENSEMBL gene 74463888 74463988 101.0 - 0 ENSG00000207525.1 misc_RNA RF00019 3 +27778 chr16 HAVANA gene 74552251 74552746 496.0 + 0 ENSG00000240861.1 processed_pseudogene AC009153.1 1 OTTHUMG00000158257.1 pseudo_consens +27779 chr16 HAVANA gene 74447427 74607144 14111.0 - 0 ENSG00000090863.11 protein_coding GLG1 2 OTTHUMG00000177174.6 ncRNA_host +27780 chr16 HAVANA gene 74612596 74613221 321.0 - 0 ENSG00000270945.1 processed_pseudogene HSPE1P7 1 OTTHUMG00000184815.1 pseudo_consens +27781 chr16 HAVANA gene 74621394 74666881 6465.0 - 0 ENSG00000168411.13 protein_coding RFWD3 2 OTTHUMG00000177368.6 +27782 chr16 HAVANA gene 74667506 74668706 1201.0 + 0 ENSG00000262904.1 processed_pseudogene TMPOP2 1 OTTHUMG00000177355.1 pseudo_consens +27783 chr16 HAVANA gene 74671855 74700960 5692.0 - 0 ENSG00000168404.12 protein_coding MLKL 1 OTTHUMG00000177356.6 +27784 chr16 HAVANA gene 74712955 74774831 3279.0 - 0 ENSG00000103089.8 protein_coding FA2H 2 OTTHUMG00000137603.5 +27785 chr16 HAVANA gene 74842587 74843883 320.0 + 0 ENSG00000261458.1 unprocessed_pseudogene AC009132.1 2 OTTHUMG00000176940.1 +27786 chr16 HAVANA gene 74871367 75000173 9422.0 - 0 ENSG00000103091.14 protein_coding WDR59 2 OTTHUMG00000170831.6 +27787 chr16 HAVANA gene 75108601 75110712 1666.0 - 0 ENSG00000247033.1 antisense AC099508.1 2 OTTHUMG00000176990.1 +27788 chr16 HAVANA gene 74999030 75110994 8824.0 + 0 ENSG00000186187.11 protein_coding ZNRF1 1 OTTHUMG00000137606.4 +27789 chr16 HAVANA gene 75111860 75116771 2359.0 - 0 ENSG00000166816.14 protein_coding LDHD 2 OTTHUMG00000137605.4 +27790 chr16 HAVANA gene 75119558 75144200 510.0 + 0 ENSG00000261058.1 lincRNA AC099508.2 2 OTTHUMG00000176991.1 +27791 chr16 HAVANA gene 75148492 75172236 3761.0 + 0 ENSG00000184517.11 protein_coding ZFP1 2 OTTHUMG00000137602.3 +27792 chr16 HAVANA gene 75192465 75193247 783.0 - 0 ENSG00000213318.4 processed_pseudogene AC009078.1 1 OTTHUMG00000158261.1 pseudo_consens +27793 chr16 HAVANA gene 75204096 75207185 2346.0 - 0 ENSG00000168928.12 protein_coding CTRB2 2 OTTHUMG00000159271.2 +27794 chr16 HAVANA gene 75219000 75226338 2184.0 + 0 ENSG00000168925.11 protein_coding CTRB1 2 OTTHUMG00000159272.6 overlapping_locus +27795 chr16 HAVANA gene 75226074 75228197 1441.0 + 0 ENSG00000240338.6 transcribed_unprocessed_pseudogene AC009078.2 2 OTTHUMG00000159270.3 overlapping_locus +27796 chr16 HAVANA gene 75245994 75250077 4084.0 - 0 ENSG00000280152.1 TEC AC009078.3 2 OTTHUMG00000177006.1 overlapping_locus +27797 chr16 HAVANA gene 75228187 75268053 9178.0 - 0 ENSG00000050820.16 protein_coding BCAR1 1 OTTHUMG00000137604.8 overlapping_locus +27798 chr16 ENSEMBL gene 75286712 75286800 89.0 - 0 ENSG00000252101.2 snRNA RNU6-758P 3 +27799 chr16 HAVANA gene 75321890 75325048 427.0 - 0 ENSG00000259999.1 sense_intronic AC009054.1 2 OTTHUMG00000177030.2 overlapping_locus +27800 chr16 HAVANA gene 75379818 75381260 374.0 - 0 ENSG00000261783.1 sense_intronic AC009054.2 2 OTTHUMG00000177128.1 overlapping_locus +27801 chr16 ENSEMBL gene 75409332 75409466 135.0 - 0 ENSG00000252122.1 snoRNA RF00598 3 +27802 chr16 HAVANA gene 75293698 75433485 3317.0 - 0 ENSG00000153774.8 protein_coding CFDP1 1 OTTHUMG00000137615.6 ncRNA_host,overlapping_locus +27803 chr16 HAVANA gene 75433836 75436392 2557.0 + 0 ENSG00000274220.1 lincRNA AC009163.6 2 OTTHUMG00000186992.1 +27804 chr16 HAVANA gene 75458252 75460017 852.0 - 0 ENSG00000261476.1 sense_intronic AC009163.3 2 OTTHUMG00000177068.1 overlapping_locus +27805 chr16 HAVANA gene 75412684 75464706 530.0 - 0 ENSG00000261717.5 protein_coding AC009163.4 2 OTTHUMG00000177067.3 overlapping_locus +27806 chr16 HAVANA gene 75443054 75465497 5572.0 - 0 ENSG00000166822.12 protein_coding TMEM170A 1 OTTHUMG00000137614.3 overlapping_locus +27807 chr16 HAVANA gene 75475896 75495407 573.0 + 0 ENSG00000203472.3 antisense AC009163.1 2 OTTHUMG00000177129.1 +27808 chr16 HAVANA gene 75472052 75495445 8620.0 - 0 ENSG00000183196.9 protein_coding CHST6 2 OTTHUMG00000137612.5 +27809 chr16 HAVANA gene 75497948 75498289 342.0 - 0 ENSG00000273971.1 lincRNA AC009163.5 2 OTTHUMG00000186995.1 +27810 chr16 HAVANA gene 75499788 75516280 830.0 - 0 ENSG00000262583.1 transcribed_unprocessed_pseudogene TMEM231P1 2 OTTHUMG00000177130.2 +27811 chr16 HAVANA gene 75528535 75535247 3322.0 - 0 ENSG00000135702.14 protein_coding CHST5 2 OTTHUMG00000137610.3 overlapping_locus +27812 chr16 HAVANA gene 75528532 75545428 2125.0 - 0 ENSG00000260092.1 protein_coding AC009163.2 2 OTTHUMG00000177131.1 overlapping_locus +27813 chr16 HAVANA gene 75536744 75556286 6015.0 - 0 ENSG00000205084.10 protein_coding TMEM231 2 OTTHUMG00000177132.5 overlapping_locus +27814 chr16 HAVANA gene 75556392 75557059 668.0 + 0 ENSG00000276408.1 lincRNA AC025287.2 2 OTTHUMG00000186993.1 +27815 chr16 HAVANA gene 75572185 75572685 501.0 - 0 ENSG00000276523.1 antisense AC025287.3 2 OTTHUMG00000186994.1 overlapping_locus +27816 chr16 HAVANA gene 75566351 75577881 3034.0 + 0 ENSG00000034713.7 protein_coding GABARAPL2 2 OTTHUMG00000137613.2 +27817 chr16 HAVANA gene 75541399 75608445 798.0 - 0 ENSG00000259992.1 processed_transcript AC025287.1 2 OTTHUMG00000177133.1 overlapping_locus +27818 chr16 HAVANA gene 75596981 75623300 4486.0 - 0 ENSG00000065457.10 protein_coding ADAT1 2 OTTHUMG00000137611.5 overlapping_locus +27819 chr16 HAVANA gene 75627474 75648643 4065.0 - 0 ENSG00000065427.14 protein_coding KARS 2 OTTHUMG00000137609.5 +27820 chr16 HAVANA gene 75660227 75677009 1240.0 - 0 ENSG00000284484.1 protein_coding AC025287.4 2 OTTHUMG00000191919.1 +27821 chr16 ENSEMBL gene 75698531 75698816 286.0 - 0 ENSG00000240199.3 misc_RNA RN7SL520P 3 +27822 chr16 HAVANA gene 75693929 75701459 1079.0 - 0 ENSG00000282757.3 protein_coding DUXB 2 OTTHUMG00000191435.3 ncRNA_host +27823 chr16 HAVANA gene 75709056 75709815 760.0 - 0 ENSG00000261424.1 processed_pseudogene ATP5PBP7 1 OTTHUMG00000177137.1 pseudo_consens +27824 chr16 HAVANA gene 75714224 75726442 1218.0 - 0 ENSG00000283755.1 protein_coding CPHXL 2 OTTHUMG00000191920.1 +27825 chr16 HAVANA gene 75647786 75761872 3379.0 + 0 ENSG00000166848.5 protein_coding TERF2IP 1 OTTHUMG00000177136.3 +27826 chr16 HAVANA gene 75838630 75860867 677.0 - 0 ENSG00000261313.1 lincRNA AC105430.1 2 OTTHUMG00000177158.1 +27827 chr16 ENSEMBL gene 75861048 75861157 110.0 - 0 ENSG00000199299.1 rRNA_pseudogene RNA5SP430 3 +27828 chr16 HAVANA gene 76107283 76147806 861.0 - 0 ENSG00000260223.1 lincRNA AC099511.1 2 OTTHUMG00000177159.1 +27829 chr16 HAVANA gene 76235055 76235623 569.0 - 0 ENSG00000244485.1 processed_pseudogene RPL18P13 1 OTTHUMG00000158262.1 pseudo_consens,overlapping_locus +27830 chr16 HAVANA gene 76228385 76262365 739.0 - 0 ENSG00000260983.1 lincRNA AC010528.1 2 OTTHUMG00000177032.1 overlapping_locus +27831 chr16 ENSEMBL gene 76287630 76287739 110.0 + 0 ENSG00000252814.1 misc_RNA RN7SKP233 3 +27832 chr16 ENSEMBL gene 76469508 76469595 88.0 - 0 ENSG00000252022.1 snoRNA RF00133 3 +27833 chr16 HAVANA gene 76277278 76559238 6482.0 + 0 ENSG00000152910.18 protein_coding CNTNAP4 2 OTTHUMG00000137617.7 ncRNA_host,overlapping_locus +27834 chr16 HAVANA gene 76582556 76583098 543.0 + 0 ENSG00000273659.1 lincRNA AC108125.1 2 OTTHUMG00000186998.1 overlapping_locus +27835 chr16 HAVANA gene 76634998 76658478 2198.0 + 0 ENSG00000250514.1 lincRNA LINC02125 2 OTTHUMG00000173062.1 overlapping_locus +27836 chr16 HAVANA gene 76553417 76819624 323.0 + 0 ENSG00000261833.2 protein_coding AC104151.1 2 OTTHUMG00000173061.2 overlapping_locus +27837 chr16 ENSEMBL gene 76868936 76869019 84.0 + 0 ENSG00000266426.1 miRNA MIR4719 3 +27838 chr16 HAVANA gene 76878274 76878936 663.0 - 0 ENSG00000260797.1 processed_pseudogene AC106734.1 1 OTTHUMG00000176661.1 pseudo_consens +27839 chr16 HAVANA gene 76736342 76928169 466.0 + 0 ENSG00000259995.1 lincRNA AC106729.1 2 OTTHUMG00000176662.2 ncRNA_host +27840 chr16 HAVANA gene 77104260 77105297 1038.0 + 0 ENSG00000279856.1 TEC AC106733.1 2 OTTHUMG00000176663.1 +27841 chr16 HAVANA gene 77190835 77202405 6942.0 + 0 ENSG00000103111.14 protein_coding MON1B 1 OTTHUMG00000137618.3 overlapping_locus +27842 chr16 HAVANA gene 77199397 77213215 1244.0 + 0 ENSG00000205078.5 protein_coding SYCE1L 2 OTTHUMG00000176809.1 overlapping_locus +27843 chr16 HAVANA gene 77220406 77221258 853.0 + 0 ENSG00000226348.1 unitary_pseudogene VN2R10P 2 OTTHUMG00000154504.1 +27844 chr16 HAVANA gene 77201474 77249957 566.0 - 0 ENSG00000261063.1 antisense AC009139.2 2 OTTHUMG00000176810.1 overlapping_locus +27845 chr16 HAVANA gene 77234877 77299950 1713.0 + 0 ENSG00000260922.2 antisense AC009139.1 2 OTTHUMG00000176819.2 +27846 chr16 HAVANA gene 77247813 77435114 6678.0 - 0 ENSG00000140873.15 protein_coding ADAMTS18 2 OTTHUMG00000137619.3 overlapping_locus +27847 chr16 HAVANA gene 77433382 77444336 579.0 + 0 ENSG00000260701.1 antisense AC025284.1 2 OTTHUMG00000176820.1 +27848 chr16 HAVANA gene 77590806 77610681 419.0 + 0 ENSG00000261154.1 lincRNA LINC02131 2 OTTHUMG00000176842.1 +27849 chr16 HAVANA gene 77657174 77660570 3397.0 + 0 ENSG00000278862.1 TEC AC092724.1 2 OTTHUMG00000176843.1 +27850 chr16 HAVANA gene 77722492 77742260 1638.0 + 0 ENSG00000140876.11 protein_coding NUDT7 1 OTTHUMG00000176808.1 +27851 chr16 HAVANA gene 77741468 77743000 800.0 - 0 ENSG00000261707.1 antisense AC092134.1 2 OTTHUMG00000176844.1 +27852 chr16 HAVANA gene 77752372 77756681 1094.0 + 0 ENSG00000285538.1 lincRNA AC092134.3 2 OTTHUMG00000192662.1 +27853 chr16 HAVANA gene 77800023 77801714 1692.0 + 0 ENSG00000278926.1 TEC AC092134.2 2 OTTHUMG00000176846.1 overlapping_locus +27854 chr16 HAVANA gene 77892422 77892915 494.0 + 0 ENSG00000261330.1 processed_pseudogene PPIAP50 1 OTTHUMG00000176847.1 pseudo_consens,overlapping_locus +27855 chr16 HAVANA gene 77788530 77980107 4137.0 + 0 ENSG00000171724.2 protein_coding VAT1L 2 OTTHUMG00000176845.2 overlapping_locus +27856 chr16 HAVANA gene 78048483 78049897 1415.0 - 0 ENSG00000260731.1 processed_pseudogene KRT8P22 1 OTTHUMG00000176849.1 pseudo_consens,overlapping_locus +27857 chr16 HAVANA gene 78055824 78056927 1104.0 - 0 ENSG00000261776.1 processed_pseudogene AC079414.2 1 OTTHUMG00000176850.1 pseudo_consens,overlapping_locus +27858 chr16 HAVANA gene 78014683 78059454 488.0 - 0 ENSG00000261540.1 antisense AC079414.1 2 OTTHUMG00000176848.1 overlapping_locus +27859 chr16 HAVANA gene 78022515 78066761 3007.0 + 0 ENSG00000166509.10 protein_coding CLEC3A 2 OTTHUMG00000137620.3 +27860 chr16 HAVANA gene 78123243 78124332 1090.0 + 0 ENSG00000276007.1 sense_intronic AC079414.3 2 OTTHUMG00000187001.1 overlapping_locus +27861 chr16 HAVANA gene 78166717 78168514 1798.0 - 0 ENSG00000279991.1 TEC AC009044.1 2 OTTHUMG00000176921.1 +27862 chr16 HAVANA gene 78237362 78241218 443.0 - 0 ENSG00000260969.1 antisense WWOX-AS1 2 OTTHUMG00000176958.1 +27863 chr16 HAVANA gene 78355529 78355834 306.0 + 0 ENSG00000260014.1 processed_pseudogene LSM3P5 1 OTTHUMG00000176922.1 pseudo_consens,overlapping_locus +27864 chr16 HAVANA gene 78495926 78506568 719.0 - 0 ENSG00000260733.1 antisense AC046158.1 2 OTTHUMG00000176959.1 +27865 chr16 HAVANA gene 78525189 78526535 1347.0 - 0 ENSG00000279887.1 TEC AC046158.4 2 OTTHUMG00000176923.1 +27866 chr16 HAVANA gene 78534374 78535648 707.0 + 0 ENSG00000261837.1 sense_intronic AC046158.2 2 OTTHUMG00000176924.1 overlapping_locus +27867 chr16 HAVANA gene 78550739 78553296 2558.0 - 0 ENSG00000279129.1 TEC AC046158.3 2 OTTHUMG00000176925.1 +27868 chr16 HAVANA gene 78825281 78826006 726.0 + 0 ENSG00000243101.1 processed_pseudogene RPS3P7 1 OTTHUMG00000158264.1 pseudo_consens,overlapping_locus +27869 chr16 HAVANA gene 78872739 78873505 767.0 + 0 ENSG00000280115.1 TEC AC136603.1 2 OTTHUMG00000176928.1 overlapping_locus +27870 chr16 HAVANA gene 78890231 78892302 2072.0 + 0 ENSG00000280190.1 TEC AC027279.4 2 OTTHUMG00000176929.1 overlapping_locus +27871 chr16 HAVANA gene 78895361 78899644 4284.0 + 0 ENSG00000260816.2 sense_intronic AC027279.1 2 OTTHUMG00000176931.2 overlapping_locus +27872 chr16 HAVANA gene 78981722 78981843 122.0 - 0 ENSG00000279732.1 TEC AC027279.3 2 OTTHUMG00000176932.1 +27873 chr16 HAVANA gene 78994345 79004730 793.0 + 0 ENSG00000261537.1 sense_intronic AC027279.2 2 OTTHUMG00000176933.1 overlapping_locus +27874 chr16 HAVANA gene 79016136 79017429 1294.0 + 0 ENSG00000280274.1 TEC AC009145.4 2 OTTHUMG00000176934.1 overlapping_locus +27875 chr16 HAVANA gene 79077376 79078234 476.0 - 0 ENSG00000260694.1 antisense AC009145.3 2 OTTHUMG00000176960.1 +27876 chr16 HAVANA gene 79090050 79101754 433.0 + 0 ENSG00000260479.1 sense_intronic AC009145.1 2 OTTHUMG00000176935.1 overlapping_locus +27877 chr16 HAVANA gene 79105957 79110882 377.0 + 0 ENSG00000260511.1 sense_intronic AC009145.2 2 OTTHUMG00000176936.1 overlapping_locus +27878 chr16 HAVANA gene 79202624 79206739 4116.0 - 0 ENSG00000277954.1 antisense AC092376.2 2 OTTHUMG00000176937.2 +27879 chr16 HAVANA gene 79208493 79211264 1218.0 - 0 ENSG00000285918.1 antisense AC092376.3 2 OTTHUMG00000193214.1 +27880 chr16 HAVANA gene 78099413 79212667 4886.0 + 0 ENSG00000186153.16 protein_coding WWOX 1 OTTHUMG00000176851.2 overlapping_locus +27881 chr16 HAVANA gene 79212711 79229453 335.0 - 0 ENSG00000261722.1 lincRNA AC092376.1 2 OTTHUMG00000176961.1 +27882 chr16 ENSEMBL gene 79264454 79264573 120.0 + 0 ENSG00000222244.1 rRNA_pseudogene RNA5SP431 3 +27883 chr16 HAVANA gene 79505603 79516293 419.0 + 0 ENSG00000261472.1 lincRNA AC084064.1 2 OTTHUMG00000176973.1 +27884 chr16 HAVANA gene 79585843 79600714 6976.0 - 0 ENSG00000178573.6 protein_coding MAF 2 OTTHUMG00000137621.3 +27885 chr16 HAVANA gene 79603572 79604177 606.0 + 0 ENSG00000277214.1 lincRNA AC009159.2 2 OTTHUMG00000187009.1 +27886 chr16 HAVANA gene 79605802 79606605 804.0 + 0 ENSG00000278058.1 lincRNA AC009159.3 2 OTTHUMG00000187007.1 +27887 chr16 HAVANA gene 79619469 79620110 642.0 + 0 ENSG00000275040.1 lincRNA AC009159.1 2 OTTHUMG00000187010.1 +27888 chr16 HAVANA gene 79675685 79677715 2031.0 - 0 ENSG00000279378.1 TEC AC009159.4 2 OTTHUMG00000176974.1 +27889 chr16 HAVANA gene 79715232 79770563 3218.0 - 0 ENSG00000261390.5 lincRNA MAFTRR 2 OTTHUMG00000176976.2 +27890 chr16 HAVANA gene 79676108 79807922 2409.0 + 0 ENSG00000260876.5 lincRNA LINC01229 2 OTTHUMG00000176975.1 +27891 chr16 HAVANA gene 79798050 79827150 623.0 - 0 ENSG00000261082.1 lincRNA LINC01228 2 OTTHUMG00000176977.1 +27892 chr16 HAVANA gene 80040662 80045745 531.0 + 0 ENSG00000260237.1 lincRNA AC092130.1 2 OTTHUMG00000176978.1 +27893 chr16 HAVANA gene 80065836 80167577 755.0 + 0 ENSG00000260706.5 lincRNA AC022166.1 2 OTTHUMG00000176979.1 +27894 chr16 HAVANA gene 80179129 80180682 536.0 + 0 ENSG00000261376.1 lincRNA AC022166.2 2 OTTHUMG00000176980.1 +27895 chr16 HAVANA gene 80540734 80550760 1464.0 + 0 ENSG00000168589.14 protein_coding DYNLRB2 1 OTTHUMG00000137622.2 +27896 chr16 HAVANA gene 80547842 80552514 534.0 - 0 ENSG00000260183.1 antisense AC108097.1 2 OTTHUMG00000177003.1 overlapping_locus +27897 chr16 HAVANA gene 80155053 80563135 2990.0 - 0 ENSG00000259867.5 antisense AC105411.1 2 OTTHUMG00000177002.1 overlapping_locus +27898 chr16 HAVANA gene 80566794 80572808 2141.0 - 0 ENSG00000260737.5 lincRNA LINC01227 2 OTTHUMG00000176267.2 +27899 chr16 HAVANA gene 80627551 80628379 829.0 - 0 ENSG00000260064.1 sense_intronic AC092332.1 2 OTTHUMG00000177005.1 overlapping_locus +27900 chr16 HAVANA gene 80736360 80742305 452.0 + 0 ENSG00000260594.1 antisense AC099313.1 2 OTTHUMG00000177011.1 +27901 chr16 HAVANA gene 80597906 80804329 8557.0 - 0 ENSG00000166446.14 protein_coding CDYL2 1 OTTHUMG00000177004.3 overlapping_locus +27902 chr16 HAVANA gene 80828735 80892595 2538.0 - 0 ENSG00000260896.5 lincRNA ARLNC1 2 OTTHUMG00000177012.1 +27903 chr16 HAVANA gene 80982319 80984094 1776.0 - 0 ENSG00000278985.1 TEC AC092718.7 2 OTTHUMG00000176490.1 overlapping_locus +27904 chr16 HAVANA gene 80966448 81020270 12781.0 - 0 ENSG00000103121.8 protein_coding CMC2 1 OTTHUMG00000137625.5 overlapping_locus +27905 chr16 HAVANA gene 81030770 81031485 716.0 + 0 ENSG00000261061.1 sense_intronic AC092718.4 2 OTTHUMG00000176424.1 overlapping_locus +27906 chr16 HAVANA gene 81006498 81033114 3568.0 + 0 ENSG00000166451.13 protein_coding CENPN 2 OTTHUMG00000137628.2 overlapping_locus +27907 chr16 HAVANA gene 81016792 81035759 1401.0 - 0 ENSG00000260213.6 antisense AC092718.2 2 OTTHUMG00000176468.2 overlapping_locus +27908 chr16 HAVANA gene 81035847 81047358 6262.0 + 0 ENSG00000166454.9 protein_coding ATMIN 1 OTTHUMG00000176469.4 +27909 chr16 HAVANA gene 81055301 81056426 593.0 + 0 ENSG00000261141.1 antisense AC092718.5 2 OTTHUMG00000176471.1 +27910 chr16 HAVANA gene 81069854 81076598 496.0 + 0 ENSG00000261838.5 antisense AC092718.6 2 OTTHUMG00000176472.1 +27911 chr16 HAVANA gene 81053497 81077267 2376.0 - 0 ENSG00000166455.13 protein_coding C16orf46 2 OTTHUMG00000137629.5 overlapping_locus +27912 chr16 HAVANA gene 81077319 81078861 1088.0 + 0 ENSG00000245059.2 lincRNA AC092718.1 2 OTTHUMG00000176473.1 +27913 chr16 HAVANA gene 81022316 81096284 2892.0 - 0 ENSG00000284512.1 protein_coding AC092718.8 2 OTTHUMG00000192005.2 overlapping_locus +27914 chr16 HAVANA gene 81053587 81096296 3177.0 - 0 ENSG00000260643.2 protein_coding AC092718.3 1 OTTHUMG00000176470.2 overlapping_locus +27915 chr16 HAVANA gene 81081938 81096425 3677.0 - 0 ENSG00000140905.10 protein_coding GCSH 2 OTTHUMG00000137626.3 overlapping_locus +27916 chr16 ENSEMBL gene 81106533 81106639 107.0 - 0 ENSG00000252608.1 snRNA RNU6-1191P 3 +27917 chr16 HAVANA gene 81100875 81220370 18637.0 - 0 ENSG00000166473.17 polymorphic_pseudogene PKD1L2 1 OTTHUMG00000166126.5 +27918 chr16 HAVANA gene 81261924 81264091 2168.0 - 0 ENSG00000280182.1 TEC AC131888.1 2 OTTHUMG00000176491.1 +27919 chr16 HAVANA gene 81238448 81291142 2930.0 + 0 ENSG00000135697.9 protein_coding BCO1 2 OTTHUMG00000137630.2 +27920 chr16 HAVANA gene 81310731 81313423 2693.0 - 0 ENSG00000260495.1 antisense AC009148.1 2 OTTHUMG00000176492.1 +27921 chr16 ENSEMBL gene 81385018 81385093 76.0 + 0 ENSG00000284473.1 miRNA MIR4720 3 +27922 chr16 HAVANA gene 81385463 81387560 754.0 + 0 ENSG00000272923.1 lincRNA AC092139.1 2 OTTHUMG00000176271.2 overlapping_locus +27923 chr16 HAVANA gene 81314947 81390884 15411.0 + 0 ENSG00000261609.6 protein_coding GAN 2 OTTHUMG00000137627.7 ncRNA_host,overlapping_locus +27924 chr16 HAVANA gene 81463892 81464859 968.0 - 0 ENSG00000279021.1 TEC AC092139.2 2 OTTHUMG00000176521.1 +27925 chr16 HAVANA gene 81476023 81476519 497.0 - 0 ENSG00000260229.1 processed_pseudogene PPIAP51 1 OTTHUMG00000176522.1 pseudo_consens +27926 chr16 HAVANA gene 81517824 81520617 2794.0 + 0 ENSG00000279476.1 TEC AC092139.3 2 OTTHUMG00000176524.1 overlapping_locus +27927 chr16 ENSEMBL gene 81533902 81533966 65.0 + 0 ENSG00000277255.1 miRNA MIR7854 3 +27928 chr16 ENSEMBL gene 81611348 81611408 61.0 + 0 ENSG00000275109.1 miRNA MIR6504 3 +27929 chr16 HAVANA gene 81617038 81617543 506.0 - 0 ENSG00000279681.1 TEC AC092135.2 2 OTTHUMG00000176527.1 +27930 chr16 HAVANA gene 81618505 81620563 2059.0 + 0 ENSG00000279294.1 TEC AC092135.1 2 OTTHUMG00000176528.1 overlapping_locus +27931 chr16 HAVANA gene 81630193 81632038 1846.0 + 0 ENSG00000279841.1 TEC AC092135.3 2 OTTHUMG00000176529.1 overlapping_locus +27932 chr16 HAVANA gene 81445170 81711762 12715.0 + 0 ENSG00000153815.16 protein_coding CMIP 1 OTTHUMG00000176520.4 ncRNA_host,overlapping_locus +27933 chr16 HAVANA gene 81738248 81767868 1934.0 + 0 ENSG00000261218.5 lincRNA AC099524.1 2 OTTHUMG00000176531.2 overlapping_locus +27934 chr16 ENSEMBL gene 81961926 81962243 318.0 + 0 ENSG00000260682.3 misc_RNA RN7SKP176 3 +27935 chr16 HAVANA gene 81739097 81962693 13416.0 + 0 ENSG00000197943.9 protein_coding PLCG2 1 OTTHUMG00000176532.3 ncRNA_host,overlapping_locus +27936 chr16 HAVANA gene 81987948 81989016 354.0 + 0 ENSG00000276519.1 lincRNA AC092142.2 2 OTTHUMG00000187036.1 +27937 chr16 HAVANA gene 81988855 82011488 11911.0 - 0 ENSG00000184860.9 protein_coding SDR42E1 1 OTTHUMG00000166148.4 +27938 chr16 HAVANA gene 82035004 82098534 9550.0 + 0 ENSG00000086696.10 protein_coding HSD17B2 2 OTTHUMG00000137631.5 +27939 chr16 HAVANA gene 82120638 82121769 1132.0 - 0 ENSG00000260161.1 processed_pseudogene MTCYBP28 2 OTTHUMG00000176576.1 overlapping_locus +27940 chr16 HAVANA gene 82044336 82139631 1030.0 - 0 ENSG00000261235.1 antisense AC092142.1 2 OTTHUMG00000176574.1 overlapping_locus +27941 chr16 HAVANA gene 82147798 82170226 2190.0 - 0 ENSG00000135698.9 protein_coding MPHOSPH6 1 OTTHUMG00000137632.2 +27942 chr16 HAVANA gene 82170296 82175803 424.0 + 0 ENSG00000261029.1 lincRNA AC138304.1 2 OTTHUMG00000176577.1 +27943 chr16 ENSEMBL gene 82192505 82192790 286.0 - 0 ENSG00000251888.1 misc_RNA RN7SKP190 3 +27944 chr16 HAVANA gene 82434828 82435381 554.0 + 0 ENSG00000259873.1 processed_pseudogene AC009117.1 1 OTTHUMG00000176578.1 pseudo_consens +27945 chr16 HAVANA gene 82491738 82575490 1943.0 - 0 ENSG00000261285.6 lincRNA AC009117.2 2 OTTHUMG00000176580.2 +27946 chr16 ENSEMBL gene 82688931 82689019 89.0 + 0 ENSG00000277387.1 miRNA MIR8058 3 +27947 chr16 HAVANA gene 82727474 82727694 221.0 + 0 ENSG00000280044.1 TEC AC099506.2 2 OTTHUMG00000176636.1 overlapping_locus +27948 chr16 HAVANA gene 82773319 82829638 4037.0 + 0 ENSG00000260862.1 sense_intronic AC099506.1 2 OTTHUMG00000176637.1 overlapping_locus +27949 chr16 ENSEMBL gene 82844455 82844757 303.0 + 0 ENSG00000263360.2 misc_RNA RN7SL134P 3 +27950 chr16 HAVANA gene 82953230 82990298 1493.0 - 0 ENSG00000260832.1 antisense AC125793.1 2 OTTHUMG00000176638.1 +27951 chr16 HAVANA gene 83383007 83398170 719.0 - 0 ENSG00000261410.1 antisense AC009142.1 2 OTTHUMG00000176639.1 +27952 chr16 ENSEMBL gene 83508346 83508408 63.0 + 0 ENSG00000263785.1 miRNA MIR3182 3 +27953 chr16 HAVANA gene 83710179 83717898 566.0 - 0 ENSG00000261103.1 antisense AC009063.3 2 OTTHUMG00000176640.1 +27954 chr16 HAVANA gene 83725676 83726377 702.0 - 0 ENSG00000259914.1 antisense AC009063.1 2 OTTHUMG00000176642.1 overlapping_locus +27955 chr16 HAVANA gene 83721119 83772936 1833.0 - 0 ENSG00000260788.5 antisense AC009063.2 2 OTTHUMG00000176641.1 overlapping_locus +27956 chr16 HAVANA gene 82626803 83800640 11187.0 + 0 ENSG00000140945.16 protein_coding CDH13 1 OTTHUMG00000176635.2 ncRNA_host,overlapping_locus +27957 chr16 HAVANA gene 83789967 83807834 1603.0 - 0 ENSG00000260228.5 antisense AC009119.1 2 OTTHUMG00000176643.1 +27958 chr16 HAVANA gene 83807843 83819737 9525.0 + 0 ENSG00000230989.6 protein_coding HSBP1 2 OTTHUMG00000176653.2 +27959 chr16 HAVANA gene 83899126 83927026 16161.0 + 0 ENSG00000103150.5 protein_coding MLYCD 2 OTTHUMG00000176654.2 overlapping_locus +27960 chr16 HAVANA gene 83929796 83931223 563.0 - 0 ENSG00000260932.1 antisense AC009119.3 2 OTTHUMG00000176656.2 +27961 chr16 HAVANA gene 83908132 83951445 3055.0 + 0 ENSG00000260300.5 protein_coding AC009119.2 2 OTTHUMG00000176811.3 overlapping_locus +27962 chr16 HAVANA gene 83948282 83966332 3460.0 + 0 ENSG00000140961.12 protein_coding OSGIN1 1 OTTHUMG00000137640.5 overlapping_locus +27963 chr16 HAVANA gene 83968632 84002776 2520.0 + 0 ENSG00000103154.9 protein_coding NECAB2 2 OTTHUMG00000137636.3 +27964 chr16 ENSEMBL gene 84039918 84040033 116.0 - 0 ENSG00000199350.1 rRNA_pseudogene RNA5SP432 3 +27965 chr16 HAVANA gene 84009667 84042636 1819.0 - 0 ENSG00000166558.10 protein_coding SLC38A8 1 OTTHUMG00000176588.2 +27966 chr16 HAVANA gene 84040790 84045333 2184.0 + 0 ENSG00000285792.1 antisense AC040169.4 2 OTTHUMG00000192732.1 +27967 chr16 HAVANA gene 84085979 84086590 612.0 - 0 ENSG00000274677.1 sense_intronic AC040169.3 2 OTTHUMG00000187047.1 overlapping_locus +27968 chr16 HAVANA gene 84053761 84116906 10238.0 - 0 ENSG00000140943.16 protein_coding MBTPS1 2 OTTHUMG00000137639.7 overlapping_locus +27969 chr16 HAVANA gene 84117051 84117571 521.0 + 0 ENSG00000260018.1 antisense AC040169.1 2 OTTHUMG00000176278.1 +27970 chr16 HAVANA gene 84119293 84121153 1015.0 + 0 ENSG00000260410.2 processed_pseudogene AC040169.2 1 OTTHUMG00000176664.2 pseudo_consens +27971 chr16 HAVANA gene 84122146 84145192 4507.0 - 0 ENSG00000103160.11 protein_coding HSDL1 2 OTTHUMG00000137635.7 +27972 chr16 HAVANA gene 84145287 84178767 7783.0 + 0 ENSG00000154099.17 protein_coding DNAAF1 1 OTTHUMG00000128517.3 +27973 chr16 HAVANA gene 84177847 84187070 5577.0 - 0 ENSG00000103168.16 protein_coding TAF1C 2 OTTHUMG00000176665.3 +27974 chr16 HAVANA gene 84192558 84197053 2870.0 - 0 ENSG00000250685.7 antisense AC009123.1 2 OTTHUMG00000176733.1 +27975 chr16 HAVANA gene 84191138 84197168 4111.0 + 0 ENSG00000140955.10 protein_coding ADAD2 1 OTTHUMG00000137637.3 +27976 chr16 HAVANA gene 84218667 84239750 6553.0 - 0 ENSG00000168418.7 protein_coding KCNG4 2 OTTHUMG00000137638.3 +27977 chr16 HAVANA gene 84255270 84261049 463.0 - 0 ENSG00000260858.1 lincRNA AC010551.3 2 OTTHUMG00000176734.1 +27978 chr16 ENSEMBL gene 84262815 84262928 114.0 - 0 ENSG00000201361.1 rRNA_pseudogene RNA5SP433 3 +27979 chr16 HAVANA gene 84295498 84296985 416.0 - 0 ENSG00000260530.1 antisense AC010551.2 2 OTTHUMG00000176735.1 +27980 chr16 HAVANA gene 84294646 84329851 8785.0 + 0 ENSG00000103175.10 protein_coding WFDC1 2 OTTHUMG00000137641.4 +27981 chr16 HAVANA gene 84342464 84343407 469.0 - 0 ENSG00000260504.1 lincRNA AC010551.1 2 OTTHUMG00000176736.1 +27982 chr16 HAVANA gene 84368527 84464187 7352.0 + 0 ENSG00000064270.12 protein_coding ATP2C2 1 OTTHUMG00000176737.2 +27983 chr16 HAVANA gene 84459259 84467361 2998.0 - 0 ENSG00000261286.1 antisense ATP2C2-AS1 2 OTTHUMG00000176738.1 +27984 chr16 HAVANA gene 84495599 84497495 596.0 + 0 ENSG00000261243.1 antisense AC022165.1 2 OTTHUMG00000176740.1 +27985 chr16 HAVANA gene 84476421 84554033 8159.0 - 0 ENSG00000140950.15 protein_coding TLDC1 2 OTTHUMG00000176739.3 +27986 chr16 HAVANA gene 84594393 84596826 2434.0 + 0 ENSG00000261471.1 antisense AC092145.1 2 OTTHUMG00000176769.1 +27987 chr16 HAVANA gene 84565594 84618077 6762.0 - 0 ENSG00000103187.7 protein_coding COTL1 2 OTTHUMG00000137634.4 +27988 chr16 HAVANA gene 84648525 84667686 9995.0 + 0 ENSG00000135686.12 protein_coding KLHL36 2 OTTHUMG00000137642.3 +27989 chr16 HAVANA gene 84699978 84779922 5083.0 + 0 ENSG00000103194.15 protein_coding USP10 2 OTTHUMG00000176770.5 +27990 chr16 HAVANA gene 84828263 84829242 260.0 + 0 ENSG00000260859.1 sense_intronic AC025280.1 2 OTTHUMG00000176783.1 overlapping_locus +27991 chr16 HAVANA gene 84817182 84856665 1331.0 - 0 ENSG00000285848.1 antisense AC025280.3 2 OTTHUMG00000193198.1 +27992 chr16 HAVANA gene 84819984 84920768 7965.0 + 0 ENSG00000103196.11 protein_coding CRISPLD2 1 OTTHUMG00000137644.6 overlapping_locus +27993 chr16 HAVANA gene 84917377 84924808 3069.0 - 0 ENSG00000279622.2 antisense AC025280.2 2 OTTHUMG00000176803.3 +27994 chr16 HAVANA gene 84928353 84939603 598.0 + 0 ENSG00000260340.1 lincRNA LINC02176 2 OTTHUMG00000176804.1 +27995 chr16 HAVANA gene 84974181 85011535 3947.0 - 0 ENSG00000153786.12 protein_coding ZDHHC7 2 OTTHUMG00000137645.4 +27996 chr16 HAVANA gene 85027751 85094230 8837.0 + 0 ENSG00000135709.12 protein_coding KIAA0513 2 OTTHUMG00000176597.2 +27997 chr16 HAVANA gene 85098358 85112508 1904.0 - 0 ENSG00000153789.12 protein_coding FAM92B 2 OTTHUMG00000187060.1 +27998 chr16 HAVANA gene 85142696 85146001 3306.0 - 0 ENSG00000275088.1 lincRNA AC026469.1 2 OTTHUMG00000187070.1 +27999 chr16 HAVANA gene 85137150 85149443 2005.0 + 0 ENSG00000278214.1 lincRNA LINC02139 2 OTTHUMG00000187071.1 +28000 chr16 HAVANA gene 85278820 85279035 216.0 - 0 ENSG00000270313.1 processed_pseudogene COX6CP16 1 OTTHUMG00000184814.1 pseudo_consens +28001 chr16 HAVANA gene 85282958 85285963 1566.0 + 0 ENSG00000179219.5 lincRNA LINC00311 2 OTTHUMG00000137643.1 +28002 chr16 ENSEMBL gene 85306226 85306325 100.0 - 0 ENSG00000266307.1 miRNA MIR5093 3 +28003 chr16 HAVANA gene 85489813 85490831 1019.0 + 0 ENSG00000278716.1 lincRNA AC133540.1 2 OTTHUMG00000187072.1 +28004 chr16 HAVANA gene 85580009 85583571 601.0 - 0 ENSG00000270124.1 lincRNA AC092127.2 2 OTTHUMG00000183874.1 +28005 chr16 HAVANA gene 85592266 85595720 3455.0 + 0 ENSG00000260417.1 lincRNA AC092127.1 2 OTTHUMG00000176284.1 +28006 chr16 ENSEMBL gene 85659378 85659675 298.0 + 0 ENSG00000263968.2 misc_RNA RN7SL381P 3 +28007 chr16 HAVANA gene 85169525 85676204 13387.0 + 0 ENSG00000131149.18 protein_coding GSE1 2 OTTHUMG00000137650.6 ncRNA_host +28008 chr16 HAVANA gene 85676198 85690073 3264.0 - 0 ENSG00000131153.8 protein_coding GINS2 1 OTTHUMG00000137646.3 +28009 chr16 HAVANA gene 85697335 85697868 534.0 - 0 ENSG00000275393.1 sense_intronic AC018695.6 2 OTTHUMG00000187073.1 overlapping_locus +28010 chr16 ENSEMBL gene 85741621 85741700 80.0 - 0 ENSG00000283416.1 miRNA MIR1910 3 +28011 chr16 HAVANA gene 85743287 85744225 498.0 + 0 ENSG00000269898.1 antisense AC018695.2 2 OTTHUMG00000183876.1 +28012 chr16 HAVANA gene 85690084 85751129 2181.0 - 0 ENSG00000154102.10 protein_coding C16orf74 1 OTTHUMG00000183875.1 ncRNA_host,overlapping_locus +28013 chr16 ENSEMBL gene 85781775 85781899 125.0 - 0 ENSG00000252311.1 snRNA RNU1-103P 3 +28014 chr16 HAVANA gene 85784382 85787617 689.0 + 0 ENSG00000270184.1 antisense AC018695.4 2 OTTHUMG00000183877.1 +28015 chr16 HAVANA gene 85792415 85792933 408.0 + 0 ENSG00000270159.1 antisense AC018695.3 2 OTTHUMG00000183878.1 +28016 chr16 HAVANA gene 85771758 85799608 4021.0 - 0 ENSG00000131148.8 protein_coding EMC8 2 OTTHUMG00000137647.2 ncRNA_host +28017 chr16 HAVANA gene 85798633 85807044 4792.0 + 0 ENSG00000131143.8 protein_coding COX4I1 1 OTTHUMG00000137649.6 +28018 chr16 HAVANA gene 85814425 85815062 315.0 - 0 ENSG00000270698.1 processed_pseudogene AC018695.5 1 OTTHUMG00000184813.1 pseudo_consens +28019 chr16 HAVANA gene 85815873 85816536 664.0 - 0 ENSG00000214259.3 processed_pseudogene AC018695.1 1 OTTHUMG00000158265.1 pseudo_consens +28020 chr16 HAVANA gene 85859521 85862012 2492.0 + 0 ENSG00000279907.1 TEC AC018695.7 2 OTTHUMG00000175696.1 +28021 chr16 ENSEMBL gene 85918347 85918416 70.0 + 0 ENSG00000274134.1 miRNA MIR6774 3 +28022 chr16 HAVANA gene 85898803 85922609 5162.0 + 0 ENSG00000140968.10 protein_coding IRF8 2 OTTHUMG00000137648.9 ncRNA_host +28023 chr16 HAVANA gene 85935281 85936223 750.0 - 0 ENSG00000268804.1 lincRNA LINC02132 2 OTTHUMG00000183858.1 +28024 chr16 HAVANA gene 85924984 85948824 2002.0 + 0 ENSG00000285163.1 lincRNA AC092723.5 2 OTTHUMG00000192582.1 +28025 chr16 HAVANA gene 85981750 85984881 632.0 + 0 ENSG00000269667.2 lincRNA AC092723.1 2 OTTHUMG00000183859.2 +28026 chr16 HAVANA gene 85963328 85985386 9844.0 - 0 ENSG00000285040.1 lincRNA AC092723.4 2 OTTHUMG00000192583.1 +28027 chr16 HAVANA gene 85986764 85995899 9136.0 - 0 ENSG00000285012.1 lincRNA AC092723.3 2 OTTHUMG00000192584.1 +28028 chr16 HAVANA gene 86035627 86036419 793.0 + 0 ENSG00000279604.1 TEC AC092723.2 2 OTTHUMG00000183860.1 +28029 chr16 HAVANA gene 86081409 86089526 7430.0 - 0 ENSG00000261177.1 lincRNA AC135012.1 2 OTTHUMG00000176285.1 +28030 chr16 HAVANA gene 86158206 86158798 479.0 - 0 ENSG00000268078.1 lincRNA AC135012.2 2 OTTHUMG00000183861.1 +28031 chr16 HAVANA gene 86192793 86198913 4039.0 - 0 ENSG00000268505.1 lincRNA AC135012.3 2 OTTHUMG00000183862.1 +28032 chr16 HAVANA gene 86196181 86199720 441.0 + 0 ENSG00000269186.2 lincRNA LINC01082 2 OTTHUMG00000183863.2 +28033 chr16 ENSEMBL gene 86275429 86275523 95.0 - 0 ENSG00000199949.2 misc_RNA RF00019 3 +28034 chr16 HAVANA gene 86286427 86293389 2065.0 + 0 ENSG00000268532.1 lincRNA LINC02135 2 OTTHUMG00000183866.1 +28035 chr16 HAVANA gene 86221423 86301303 1778.0 - 0 ENSG00000268754.3 lincRNA LINC01081 2 OTTHUMG00000183865.4 ncRNA_host +28036 chr16 HAVANA gene 86347387 86349611 901.0 + 0 ENSG00000269826.1 lincRNA AC092327.2 2 OTTHUMG00000183868.1 +28037 chr16 HAVANA gene 86331844 86349683 3179.0 - 0 ENSG00000168367.9 lincRNA LINC00917 2 OTTHUMG00000183867.1 +28038 chr16 HAVANA gene 86434830 86435884 744.0 - 0 ENSG00000268473.1 processed_pseudogene AC092327.1 1 OTTHUMG00000183869.1 pseudo_consens +28039 chr16 HAVANA gene 86474529 86509099 6795.0 - 0 ENSG00000268388.5 lincRNA FENDRR 2 OTTHUMG00000183870.2 +28040 chr16 HAVANA gene 86510527 86515418 3516.0 + 0 ENSG00000103241.6 protein_coding FOXF1 1 OTTHUMG00000137651.4 +28041 chr16 HAVANA gene 86520383 86523897 3515.0 - 0 ENSG00000270020.1 lincRNA AC009108.3 2 OTTHUMG00000183899.1 +28042 chr16 HAVANA gene 86525457 86526252 796.0 + 0 ENSG00000243697.1 processed_pseudogene AC009108.1 1 OTTHUMG00000158270.1 pseudo_consens +28043 chr16 HAVANA gene 86530176 86555235 6863.0 - 0 ENSG00000103248.18 protein_coding MTHFSD 1 OTTHUMG00000176480.5 +28044 chr16 HAVANA gene 86555320 86557299 1980.0 + 0 ENSG00000280278.1 TEC FLJ30679 2 OTTHUMG00000183871.1 +28045 chr16 HAVANA gene 86565145 86567761 319.0 - 0 ENSG00000260944.1 antisense FOXC2-AS1 2 OTTHUMG00000176481.1 +28046 chr16 HAVANA gene 86566829 86569728 2900.0 + 0 ENSG00000176692.6 protein_coding FOXC2 2 OTTHUMG00000137652.3 +28047 chr16 HAVANA gene 86576368 86582160 3742.0 + 0 ENSG00000176678.5 protein_coding FOXL1 2 OTTHUMG00000137653.4 +28048 chr16 HAVANA gene 86595189 86597639 2451.0 + 0 ENSG00000279142.1 TEC AC009108.4 2 OTTHUMG00000176296.1 +28049 chr16 HAVANA gene 86636328 86637145 269.0 - 0 ENSG00000260387.1 lincRNA AC009108.2 2 OTTHUMG00000176482.1 +28050 chr16 HAVANA gene 86646301 86668923 508.0 + 0 ENSG00000261161.1 lincRNA AC009154.1 2 OTTHUMG00000176483.1 +28051 chr16 HAVANA gene 86698118 86698841 724.0 + 0 ENSG00000274478.1 lincRNA AC009154.2 2 OTTHUMG00000187077.1 +28052 chr16 HAVANA gene 86720688 86721954 506.0 - 0 ENSG00000260026.1 lincRNA LINC02189 2 OTTHUMG00000176294.1 +28053 chr16 HAVANA gene 86710122 86742083 5840.0 + 0 ENSG00000261175.6 lincRNA LINC02188 2 OTTHUMG00000176484.3 +28054 chr16 HAVANA gene 86906175 86906472 298.0 - 0 ENSG00000260795.1 processed_pseudogene AC093519.1 1 OTTHUMG00000176394.1 pseudo_consens +28055 chr16 HAVANA gene 87057784 87063991 4083.0 + 0 ENSG00000232190.2 lincRNA LINC02181 2 OTTHUMG00000175678.1 +28056 chr16 HAVANA gene 87066705 87069752 464.0 + 0 ENSG00000261363.2 lincRNA AC106745.1 2 OTTHUMG00000175679.2 +28057 chr16 HAVANA gene 87129857 87133107 3034.0 + 0 ENSG00000285527.1 lincRNA AC136285.3 2 OTTHUMG00000192974.1 +28058 chr16 HAVANA gene 87215915 87216452 378.0 + 0 ENSG00000261651.1 antisense AC136285.2 2 OTTHUMG00000175682.1 overlapping_locus +28059 chr16 HAVANA gene 87212122 87226430 1447.0 + 0 ENSG00000261095.1 lincRNA AC136285.1 2 OTTHUMG00000175681.1 overlapping_locus +28060 chr16 HAVANA gene 87268185 87268337 153.0 + 0 ENSG00000243705.1 processed_pseudogene AC010531.2 1 OTTHUMG00000158271.1 pseudo_consens +28061 chr16 HAVANA gene 87262759 87292438 2424.0 - 0 ENSG00000261697.5 sense_intronic AC010531.4 2 OTTHUMG00000175683.1 overlapping_locus +28062 chr16 HAVANA gene 87296949 87297633 685.0 + 0 ENSG00000280419.1 TEC AC010531.8 2 OTTHUMG00000176298.1 +28063 chr16 HAVANA gene 87083562 87317420 3670.0 - 0 ENSG00000260456.6 protein_coding C16orf95 2 OTTHUMG00000175680.1 overlapping_locus +28064 chr16 HAVANA gene 87317509 87318043 401.0 + 0 ENSG00000270006.2 antisense AC010531.6 2 OTTHUMG00000183879.2 +28065 chr16 HAVANA gene 87326987 87327584 465.0 + 0 ENSG00000270082.1 antisense AC010531.7 2 OTTHUMG00000183881.1 +28066 chr16 HAVANA gene 87302876 87334273 953.0 - 0 ENSG00000131152.4 protein_coding AC010531.1 2 OTTHUMG00000175684.1 overlapping_locus +28067 chr16 HAVANA gene 87362536 87367476 450.0 + 0 ENSG00000269901.1 antisense AC010531.5 2 OTTHUMG00000183882.1 +28068 chr16 HAVANA gene 87326987 87392142 6897.0 - 0 ENSG00000103264.17 protein_coding FBXO31 1 OTTHUMG00000175685.5 overlapping_locus +28069 chr16 HAVANA gene 87396704 87400295 513.0 - 0 ENSG00000261592.1 antisense AC010531.3 2 OTTHUMG00000175686.1 +28070 chr16 HAVANA gene 87383995 87404779 5313.0 + 0 ENSG00000140941.12 protein_coding MAP1LC3B 2 OTTHUMG00000137654.3 +28071 chr16 HAVANA gene 87467138 87467654 517.0 + 0 ENSG00000276393.1 unprocessed_pseudogene AC105429.2 2 OTTHUMG00000187989.1 +28072 chr16 HAVANA gene 87470370 87474370 4001.0 - 0 ENSG00000276337.1 sense_intronic AC105429.1 2 OTTHUMG00000187080.1 overlapping_locus +28073 chr16 HAVANA gene 87406246 87492045 7390.0 - 0 ENSG00000140948.11 protein_coding ZCCHC14 2 OTTHUMG00000137655.2 overlapping_locus +28074 chr16 HAVANA gene 87492555 87515635 1356.0 + 0 ENSG00000260750.5 lincRNA AC092720.1 2 OTTHUMG00000175695.1 +28075 chr16 HAVANA gene 87600526 87602190 1665.0 - 0 ENSG00000269935.1 antisense AC092720.2 2 OTTHUMG00000183883.1 +28076 chr16 HAVANA gene 87683945 87684477 533.0 - 0 ENSG00000277504.1 antisense AC010536.3 2 OTTHUMG00000187083.1 +28077 chr16 HAVANA gene 87693537 87696147 2611.0 - 0 ENSG00000226180.3 lincRNA AC010536.1 2 OTTHUMG00000168510.2 +28078 chr16 HAVANA gene 87601835 87698156 5941.0 + 0 ENSG00000154118.12 protein_coding JPH3 1 OTTHUMG00000137656.3 +28079 chr16 HAVANA gene 87739771 87747706 338.0 - 0 ENSG00000260671.2 sense_intronic AC010536.2 2 OTTHUMG00000176381.2 overlapping_locus +28080 chr16 HAVANA gene 87696485 87765992 11177.0 - 0 ENSG00000104731.13 protein_coding KLHDC4 2 OTTHUMG00000137657.3 overlapping_locus +28081 chr16 HAVANA gene 87773488 87779374 802.0 - 0 ENSG00000260498.5 lincRNA AC126696.3 2 OTTHUMG00000176390.1 +28082 chr16 HAVANA gene 87780134 87806476 756.0 - 0 ENSG00000260177.1 lincRNA AC126696.1 2 OTTHUMG00000176391.1 +28083 chr16 ENSEMBL gene 87834592 87834660 69.0 - 0 ENSG00000278598.1 miRNA MIR6775 3 +28084 chr16 HAVANA gene 87836532 87837663 522.0 + 0 ENSG00000260466.1 antisense AC126696.2 2 OTTHUMG00000176392.1 +28085 chr16 HAVANA gene 87830023 87869488 4745.0 - 0 ENSG00000103257.8 protein_coding SLC7A5 2 OTTHUMG00000137658.3 ncRNA_host +28086 chr16 HAVANA gene 87892938 87893685 420.0 - 0 ENSG00000260603.1 sense_intronic AC133539.1 2 OTTHUMG00000175549.1 overlapping_locus +28087 chr16 HAVANA gene 87892955 87893735 467.0 + 0 ENSG00000270385.1 processed_pseudogene AC133539.2 1 OTTHUMG00000184801.1 pseudo_consens +28088 chr16 HAVANA gene 87881546 87936580 8140.0 - 0 ENSG00000174990.5 protein_coding CA5A 2 OTTHUMG00000137677.4 overlapping_locus +28089 chr16 HAVANA gene 87945058 87945202 145.0 - 0 ENSG00000260443.1 processed_pseudogene AC127455.1 1 OTTHUMG00000175538.2 pseudo_consens +28090 chr16 HAVANA gene 87949244 88077318 8154.0 + 0 ENSG00000172530.20 protein_coding BANP 2 OTTHUMG00000137678.9 +28091 chr16 HAVANA gene 88079161 88087383 559.0 - 0 ENSG00000261193.1 lincRNA AC134312.4 2 OTTHUMG00000175539.1 +28092 chr16 HAVANA gene 88087387 88087932 213.0 + 0 ENSG00000260166.1 lincRNA AC134312.3 2 OTTHUMG00000175540.1 +28093 chr16 HAVANA gene 88088041 88100985 3616.0 - 0 ENSG00000205037.2 lincRNA AC134312.1 2 OTTHUMG00000175541.1 +28094 chr16 HAVANA gene 88177289 88178646 608.0 + 0 ENSG00000260162.2 lincRNA AC134312.2 2 OTTHUMG00000175542.2 +28095 chr16 HAVANA gene 88177298 88178941 1507.0 - 0 ENSG00000261327.4 lincRNA AC134312.5 2 OTTHUMG00000175543.1 +28096 chr16 HAVANA gene 88191486 88193667 444.0 - 0 ENSG00000261816.1 lincRNA AC134312.6 2 OTTHUMG00000175544.1 +28097 chr16 HAVANA gene 88194281 88195217 498.0 + 0 ENSG00000260420.2 lincRNA LINC02182 2 OTTHUMG00000175545.2 +28098 chr16 HAVANA gene 88234785 88302511 434.0 + 0 ENSG00000261273.1 lincRNA AC138512.1 2 OTTHUMG00000175546.1 +28099 chr16 HAVANA gene 88427471 88440757 13287.0 + 0 ENSG00000225614.2 protein_coding ZNF469 2 OTTHUMG00000173151.4 +28100 chr16 ENSEMBL gene 88468918 88469031 114.0 + 0 ENSG00000263456.1 miRNA MIR5189 3 +28101 chr16 HAVANA gene 88512960 88531053 733.0 - 0 ENSG00000261744.1 antisense AC116552.1 2 OTTHUMG00000173240.1 +28102 chr16 HAVANA gene 88453317 88537016 6110.0 + 0 ENSG00000179588.8 protein_coding ZFPM1 2 OTTHUMG00000173152.4 ncRNA_host +28103 chr16 HAVANA gene 88570381 88631966 8648.0 + 0 ENSG00000158545.15 protein_coding ZC3H18 1 OTTHUMG00000137679.8 +28104 chr16 HAVANA gene 88638591 88640473 1379.0 + 0 ENSG00000124391.4 protein_coding IL17C 2 OTTHUMG00000173241.1 +28105 chr16 HAVANA gene 88643283 88651152 3357.0 - 0 ENSG00000051523.10 protein_coding CYBA 1 OTTHUMG00000173320.4 +28106 chr16 HAVANA gene 88651935 88663161 4717.0 - 0 ENSG00000167508.11 protein_coding MVD 1 OTTHUMG00000137865.5 +28107 chr16 HAVANA gene 88677682 88686493 1732.0 - 0 ENSG00000185669.5 protein_coding SNAI3 2 OTTHUMG00000173243.1 +28108 chr16 HAVANA gene 88663298 88687186 5037.0 + 0 ENSG00000260630.6 antisense SNAI3-AS1 2 OTTHUMG00000173242.3 +28109 chr16 HAVANA gene 88696501 88698610 213.0 + 0 ENSG00000259813.1 antisense AC138028.3 2 OTTHUMG00000173416.1 +28110 chr16 HAVANA gene 88696495 88706421 4394.0 - 0 ENSG00000158717.10 protein_coding RNF166 2 OTTHUMG00000137863.7 +28111 chr16 HAVANA gene 88708956 88710437 1482.0 - 0 ENSG00000278341.1 antisense AC138028.6 2 OTTHUMG00000187091.1 +28112 chr16 HAVANA gene 88706463 88715386 3532.0 + 0 ENSG00000174177.12 protein_coding CTU2 2 OTTHUMG00000173417.3 +28113 chr16 ENSEMBL gene 88716278 88716337 60.0 - 0 ENSG00000284585.1 miRNA MIR4722 3 +28114 chr16 HAVANA gene 88718615 88720459 1845.0 + 0 ENSG00000260121.1 antisense AC138028.4 2 OTTHUMG00000175691.1 +28115 chr16 HAVANA gene 88731180 88741425 4797.0 + 0 ENSG00000224888.4 antisense AC138028.2 2 OTTHUMG00000156775.4 +28116 chr16 HAVANA gene 88741631 88742367 558.0 + 0 ENSG00000260617.1 antisense AC138028.5 2 OTTHUMG00000173434.1 +28117 chr16 HAVANA gene 88742767 88745748 2238.0 + 0 ENSG00000182376.2 antisense AC138028.1 2 OTTHUMG00000173435.1 +28118 chr16 HAVANA gene 88715338 88785220 11292.0 - 0 ENSG00000103335.22 protein_coding PIEZO1 1 OTTHUMG00000156776.14 ncRNA_host +28119 chr16 HAVANA gene 88803213 88809258 3336.0 + 0 ENSG00000167513.8 protein_coding CDT1 2 OTTHUMG00000173467.2 +28120 chr16 HAVANA gene 88809339 88811944 1803.0 - 0 ENSG00000198931.10 protein_coding APRT 2 OTTHUMG00000175454.5 +28121 chr16 HAVANA gene 88813734 88856970 8402.0 - 0 ENSG00000141012.12 protein_coding GALNS 1 OTTHUMG00000137862.5 +28122 chr16 HAVANA gene 88856220 88862686 4463.0 + 0 ENSG00000167515.10 protein_coding TRAPPC2L 1 OTTHUMG00000137861.6 +28123 chr16 HAVANA gene 88863333 88866660 1314.0 - 0 ENSG00000205022.9 protein_coding PABPN1L 2 OTTHUMG00000170127.2 +28124 chr16 HAVANA gene 88881038 88887136 3057.0 + 0 ENSG00000259881.1 antisense AC092384.2 2 OTTHUMG00000175521.1 +28125 chr16 HAVANA gene 88936779 88939651 2873.0 - 0 ENSG00000261226.1 sense_intronic AC092384.3 2 OTTHUMG00000176349.1 overlapping_locus +28126 chr16 HAVANA gene 88939789 88951524 1812.0 + 0 ENSG00000205018.2 antisense AC092384.1 2 OTTHUMG00000175522.2 +28127 chr16 HAVANA gene 88874858 88977204 5972.0 - 0 ENSG00000129993.14 protein_coding CBFA2T3 2 OTTHUMG00000137864.9 overlapping_locus +28128 chr16 HAVANA gene 88984032 88995369 472.0 + 0 ENSG00000259989.1 lincRNA AC135782.2 2 OTTHUMG00000175523.1 +28129 chr16 HAVANA gene 89046172 89052965 2154.0 - 0 ENSG00000256982.1 lincRNA AC135782.1 2 OTTHUMG00000175614.1 +28130 chr16 HAVANA gene 89113175 89115279 2105.0 - 0 ENSG00000261546.1 antisense AC135782.3 2 OTTHUMG00000176346.1 +28131 chr16 HAVANA gene 89088375 89164121 14618.0 + 0 ENSG00000176715.16 protein_coding ACSF3 1 OTTHUMG00000138044.12 +28132 chr16 HAVANA gene 89159146 89164245 3961.0 + 0 ENSG00000180422.3 lincRNA LINC00304 2 OTTHUMG00000175524.2 +28133 chr16 HAVANA gene 89166383 89169147 1326.0 + 0 ENSG00000205015.1 lincRNA LINC02138 2 OTTHUMG00000175525.1 +28134 chr16 HAVANA gene 89171767 89195492 4628.0 + 0 ENSG00000129910.7 protein_coding CDH15 2 OTTHUMG00000138045.3 +28135 chr16 HAVANA gene 89195761 89201664 2610.0 - 0 ENSG00000259803.6 protein_coding SLC22A31 2 OTTHUMG00000175615.3 +28136 chr16 HAVANA gene 89215211 89217653 2443.0 - 0 ENSG00000259877.2 antisense AC009113.1 2 OTTHUMG00000175616.2 +28137 chr16 HAVANA gene 89226807 89228692 403.0 - 0 ENSG00000260659.1 antisense AC009113.2 2 OTTHUMG00000175617.1 +28138 chr16 HAVANA gene 89217703 89237071 11273.0 + 0 ENSG00000170100.13 protein_coding ZNF778 2 OTTHUMG00000175526.4 +28139 chr16 HAVANA gene 89268104 89273044 3660.0 + 0 ENSG00000268218.1 antisense AC137932.3 2 OTTHUMG00000175557.2 +28140 chr16 HAVANA gene 89296128 89298317 1576.0 + 0 ENSG00000260279.3 antisense AC137932.1 2 OTTHUMG00000175558.4 +28141 chr16 HAVANA gene 89321133 89325110 1360.0 + 0 ENSG00000261253.2 processed_transcript AC137932.2 2 OTTHUMG00000175559.3 +28142 chr16 HAVANA gene 89420075 89422226 415.0 - 0 ENSG00000261692.1 sense_intronic AC092120.1 2 OTTHUMG00000176348.1 overlapping_locus +28143 chr16 ENSEMBL gene 89443318 89443424 107.0 + 0 ENSG00000252887.1 snRNA RNU6-430P 3 +28144 chr16 HAVANA gene 89458870 89459437 568.0 + 0 ENSG00000270832.1 processed_pseudogene AC092120.2 1 OTTHUMG00000184798.1 pseudo_consens +28145 chr16 HAVANA gene 89267619 89490561 19538.0 - 0 ENSG00000167522.15 protein_coding ANKRD11 1 OTTHUMG00000175548.13 overlapping_locus +28146 chr16 HAVANA gene 89492017 89504460 1045.0 - 0 ENSG00000261118.1 antisense AC092123.1 2 OTTHUMG00000175513.3 +28147 chr16 HAVANA gene 89490719 89557768 36008.0 + 0 ENSG00000197912.15 protein_coding SPG7 1 OTTHUMG00000138046.19 overlapping_locus +28148 chr16 ENSEMBL gene 89561434 89561517 84.0 + 0 ENSG00000200084.1 snoRNA SNORD68 3 +28149 chr16 HAVANA gene 89560657 89566828 6172.0 + 0 ENSG00000167526.13 protein_coding RPL13 1 OTTHUMG00000133770.8 ncRNA_host +28150 chr16 HAVANA gene 89575768 89597246 3048.0 + 0 ENSG00000178773.14 protein_coding CPNE7 1 OTTHUMG00000138051.5 +28151 chr16 HAVANA gene 89613308 89638456 2737.0 + 0 ENSG00000015413.9 protein_coding DPEP1 2 OTTHUMG00000138052.4 +28152 chr16 HAVANA gene 89644431 89657845 3208.0 - 0 ENSG00000131165.14 protein_coding CHMP1A 1 OTTHUMG00000169521.1 +28153 chr16 HAVANA gene 89657802 89671272 5746.0 + 0 ENSG00000167523.13 protein_coding SPATA33 1 OTTHUMG00000138048.4 +28154 chr16 HAVANA gene 89671568 89685304 3077.0 + 0 ENSG00000275734.2 sense_overlapping AC010538.1 2 OTTHUMG00000187153.3 overlapping_locus +28155 chr16 HAVANA gene 89682620 89686569 721.0 - 0 ENSG00000260259.1 lincRNA LINC02166 1 OTTHUMG00000173427.1 +28156 chr16 HAVANA gene 89680737 89696364 6791.0 + 0 ENSG00000185324.21 protein_coding CDK10 1 OTTHUMG00000138049.4 overlapping_locus +28157 chr16 HAVANA gene 89696343 89701705 2482.0 - 0 ENSG00000158792.15 protein_coding SPATA2L 2 OTTHUMG00000138047.3 +28158 chr16 HAVANA gene 89711856 89718165 1753.0 + 0 ENSG00000261373.1 antisense VPS9D1-AS1 2 OTTHUMG00000173220.1 +28159 chr16 HAVANA gene 89707134 89720986 3428.0 - 0 ENSG00000075399.13 protein_coding VPS9D1 2 OTTHUMG00000173219.2 +28160 chr16 HAVANA gene 89720400 89740903 7427.0 + 0 ENSG00000158805.11 protein_coding ZNF276 2 OTTHUMG00000138050.3 +28161 chr16 HAVANA gene 89737549 89816657 9736.0 - 0 ENSG00000187741.14 protein_coding FANCA 2 OTTHUMG00000173049.6 +28162 chr16 HAVANA gene 89818179 89871319 7975.0 + 0 ENSG00000204991.10 protein_coding SPIRE2 2 OTTHUMG00000173039.2 +28163 chr16 HAVANA gene 89873570 89913627 7967.0 + 0 ENSG00000141002.19 protein_coding TCF25 1 OTTHUMG00000138986.5 overlapping_locus +28164 chr16 HAVANA gene 89906157 89918233 559.0 + 0 ENSG00000267048.1 processed_transcript AC092143.3 2 OTTHUMG00000180512.1 overlapping_locus +28165 chr16 HAVANA gene 89912119 89920977 5566.0 + 0 ENSG00000258839.3 protein_coding MC1R 2 OTTHUMG00000171163.2 overlapping_locus +28166 chr16 HAVANA gene 89919827 89922662 985.0 - 0 ENSG00000259006.1 antisense AC092143.2 2 OTTHUMG00000171164.1 +28167 chr16 HAVANA gene 89919165 89936092 2776.0 + 0 ENSG00000198211.8 protein_coding AC092143.1 1 OTTHUMG00000171162.2 overlapping_locus +28168 chr16 HAVANA gene 89921392 89938761 4430.0 + 0 ENSG00000258947.6 protein_coding TUBB3 1 OTTHUMG00000138985.3 overlapping_locus +28169 chr16 HAVANA gene 89947925 89968060 6565.0 + 0 ENSG00000140995.16 protein_coding DEF8 2 OTTHUMG00000138989.4 +28170 chr16 HAVANA gene 89969773 89972832 3060.0 - 0 ENSG00000177946.6 protein_coding CENPBD1 2 OTTHUMG00000173040.2 +28171 chr16 HAVANA gene 89972586 90002161 9532.0 + 0 ENSG00000223959.8 transcribed_unitary_pseudogene AFG3L1P 2 OTTHUMG00000138987.4 +28172 chr16 HAVANA gene 90004865 90020128 4791.0 - 0 ENSG00000003249.13 protein_coding DBNDD1 2 OTTHUMG00000138984.3 +28173 chr16 HAVANA gene 90028908 90029901 994.0 - 0 ENSG00000221819.6 antisense GAS8-AS1 2 OTTHUMG00000172804.2 +28174 chr16 HAVANA gene 90019629 90044975 5615.0 + 0 ENSG00000141013.16 protein_coding GAS8 2 OTTHUMG00000138988.3 +28175 chr16 HAVANA gene 90039761 90047773 2340.0 - 0 ENSG00000222019.7 transcribed_unprocessed_pseudogene URAHP 2 OTTHUMG00000154575.4 +28176 chr16 HAVANA gene 90056566 90092072 4104.0 - 0 ENSG00000126856.14 protein_coding PRDM7 2 OTTHUMG00000138990.5 +28177 chr16 HAVANA gene 90093154 90096354 2466.0 + 0 ENSG00000261812.6 transcribed_unprocessed_pseudogene TUBB8P7 1 OTTHUMG00000172847.2 pseudo_consens +28178 chr16 HAVANA gene 90105095 90106316 416.0 - 0 ENSG00000260507.1 lincRNA AC133919.1 2 OTTHUMG00000172849.1 +28179 chr16 ENSEMBL gene 90144592 90144695 104.0 + 0 ENSG00000222359.1 snRNA RNU6-355P 3 +28180 chr16 HAVANA gene 90110574 90168225 952.0 - 0 ENSG00000261172.1 lincRNA AC133919.2 2 OTTHUMG00000172850.1 +28181 chr16 HAVANA gene 90174062 90175865 1804.0 - 0 ENSG00000277349.1 unprocessed_pseudogene AC133919.3 1 OTTHUMG00000187992.1 pseudo_consens +28182 chr16 HAVANA gene 90102271 90178344 4524.0 + 0 ENSG00000260528.4 lincRNA FAM157C 2 OTTHUMG00000172848.1 ncRNA_host +28183 chr16 HAVANA gene 90173217 90222678 3723.0 + 0 ENSG00000260923.6 lincRNA LINC02193 2 OTTHUMG00000172851.2 +28184 chr17 HAVANA gene 64099 76866 2096.0 - 0 ENSG00000280279.1 lincRNA AC240565.2 2 OTTHUMG00000189255.1 +28185 chr17 ENSEMBL gene 90796 90899 104.0 - 0 ENSG00000277613.1 snRNA RF00026 3 +28186 chr17 HAVANA gene 88641 118578 1373.0 - 0 ENSG00000280136.2 lincRNA AC240565.1 2 OTTHUMG00000189256.2 ncRNA_host +28187 chr17 HAVANA gene 137526 139067 478.0 + 0 ENSG00000268320.3 protein_coding SCGB1C2 2 OTTHUMG00000189257.1 +28188 chr17 HAVANA gene 142789 181636 6448.0 - 0 ENSG00000272636.3 protein_coding DOC2B 2 OTTHUMG00000154415.4 +28189 chr17 HAVANA gene 183824 191587 1185.0 - 0 ENSG00000273172.1 lincRNA LINC02091 2 OTTHUMG00000132133.2 +28190 chr17 HAVANA gene 321392 322453 432.0 + 0 ENSG00000262920.5 antisense AC129507.4 2 OTTHUMG00000177416.1 +28191 chr17 HAVANA gene 331205 333488 2284.0 + 0 ENSG00000262061.5 processed_transcript AC129507.1 2 OTTHUMG00000177419.2 +28192 chr17 HAVANA gene 354737 356882 913.0 + 0 ENSG00000262558.1 antisense AC129507.3 2 OTTHUMG00000177418.1 overlapping_locus +28193 chr17 HAVANA gene 352638 357581 748.0 + 0 ENSG00000262294.1 antisense AC129507.2 2 OTTHUMG00000177417.1 overlapping_locus +28194 chr17 HAVANA gene 212389 386254 6066.0 - 0 ENSG00000181031.15 protein_coding RPH3AL 1 OTTHUMG00000090273.10 +28195 chr17 HAVANA gene 404468 414023 1323.0 - 0 ENSG00000241525.4 antisense AC141424.1 2 OTTHUMG00000132132.5 +28196 chr17 HAVANA gene 410327 431062 2710.0 + 0 ENSG00000187624.8 protein_coding C17orf97 1 OTTHUMG00000132479.6 +28197 chr17 HAVANA gene 439978 445939 3621.0 - 0 ENSG00000183688.4 protein_coding RFLNB 2 OTTHUMG00000132483.1 +28198 chr17 HAVANA gene 503171 511347 493.0 + 0 ENSG00000263015.1 antisense AC015853.2 2 OTTHUMG00000177479.1 +28199 chr17 HAVANA gene 523140 540576 478.0 + 0 ENSG00000263300.1 antisense AC015853.3 2 OTTHUMG00000177482.1 +28200 chr17 HAVANA gene 552566 553417 592.0 + 0 ENSG00000262905.1 antisense AC015853.1 2 OTTHUMG00000177480.1 +28201 chr17 HAVANA gene 616002 616595 594.0 + 0 ENSG00000262708.1 processed_pseudogene AC027455.1 1 OTTHUMG00000177456.2 pseudo_consens +28202 chr17 HAVANA gene 656794 657547 754.0 - 0 ENSG00000244097.1 processed_pseudogene RPS4XP17 1 OTTHUMG00000157647.1 pseudo_consens,overlapping_locus +28203 chr17 HAVANA gene 508668 721717 20899.0 - 0 ENSG00000141252.19 protein_coding VPS53 1 OTTHUMG00000177441.11 overlapping_locus +28204 chr17 HAVANA gene 732412 742972 2740.0 + 0 ENSG00000167695.14 protein_coding FAM57A 1 OTTHUMG00000177491.5 +28205 chr17 HAVANA gene 744414 753999 5751.0 - 0 ENSG00000179409.10 protein_coding GEMIN4 1 OTTHUMG00000177495.4 +28206 chr17 HAVANA gene 752660 755336 2677.0 + 0 ENSG00000231784.8 transcribed_unitary_pseudogene DBIL5P 2 OTTHUMG00000132485.3 +28207 chr17 HAVANA gene 763565 765319 1755.0 - 0 ENSG00000262228.2 lincRNA AC087392.3 2 OTTHUMG00000177498.1 +28208 chr17 HAVANA gene 757097 783390 5603.0 - 0 ENSG00000167699.13 protein_coding GLOD4 2 OTTHUMG00000177497.5 overlapping_locus +28209 chr17 HAVANA gene 789744 790525 486.0 - 0 ENSG00000262434.1 antisense AC087392.4 2 OTTHUMG00000177506.1 +28210 chr17 HAVANA gene 782273 792509 2065.0 + 0 ENSG00000171861.10 protein_coding MRM3 2 OTTHUMG00000090285.2 +28211 chr17 HAVANA gene 795306 795794 489.0 + 0 ENSG00000277491.1 lincRNA AC087392.5 2 OTTHUMG00000186615.1 +28212 chr17 HAVANA gene 877902 880093 585.0 + 0 ENSG00000262133.1 antisense AC087392.2 2 OTTHUMG00000177502.1 +28213 chr17 HAVANA gene 909632 911212 820.0 + 0 ENSG00000262003.1 antisense AC087392.1 2 OTTHUMG00000177503.1 +28214 chr17 HAVANA gene 959034 959366 333.0 + 0 ENSG00000263017.1 processed_pseudogene AC036164.1 1 OTTHUMG00000177504.1 pseudo_consens +28215 chr17 HAVANA gene 799313 979770 5880.0 - 0 ENSG00000167693.16 protein_coding NXN 2 OTTHUMG00000090307.4 +28216 chr17 HAVANA gene 997117 1003671 3194.0 + 0 ENSG00000177370.4 protein_coding TIMM22 2 OTTHUMG00000180175.2 +28217 chr17 ENSEMBL gene 1022476 1022559 84.0 - 0 ENSG00000264429.1 miRNA MIR3183 3 +28218 chr17 ENSEMBL gene 1101007 1101273 267.0 - 0 ENSG00000278794.1 misc_RNA RF00017 3 +28219 chr17 HAVANA gene 1155966 1156175 210.0 + 0 ENSG00000275997.1 processed_pseudogene AC016292.2 2 OTTHUMG00000187890.1 +28220 chr17 HAVANA gene 1181893 1185086 235.0 + 0 ENSG00000235361.1 antisense AC016292.1 2 OTTHUMG00000132154.1 +28221 chr17 HAVANA gene 1003518 1229738 12426.0 - 0 ENSG00000159842.15 protein_coding ABR 1 OTTHUMG00000090313.18 ncRNA_host +28222 chr17 HAVANA gene 1241939 1254000 340.0 - 0 ENSG00000262213.1 lincRNA AC144836.1 2 OTTHUMG00000177512.1 +28223 chr17 HAVANA gene 1270559 1271460 902.0 + 0 ENSG00000205899.3 protein_coding BHLHA9 2 OTTHUMG00000132192.1 +28224 chr17 HAVANA gene 1279663 1300987 3596.0 + 0 ENSG00000184811.3 protein_coding TRARG1 2 OTTHUMG00000132196.2 +28225 chr17 HAVANA gene 1352070 1352255 186.0 + 0 ENSG00000280408.1 TEC AC032044.2 2 OTTHUMG00000177527.1 +28226 chr17 HAVANA gene 1344272 1400378 3847.0 - 0 ENSG00000108953.16 protein_coding YWHAE 1 OTTHUMG00000134316.6 +28227 chr17 HAVANA gene 1424473 1426484 691.0 + 0 ENSG00000262777.1 antisense AC032044.1 2 OTTHUMG00000177528.1 +28228 chr17 HAVANA gene 1420689 1463162 4090.0 - 0 ENSG00000167193.7 protein_coding CRK 2 OTTHUMG00000090317.3 +28229 chr17 HAVANA gene 1464186 1492812 8106.0 - 0 ENSG00000197879.16 protein_coding MYO1C 2 OTTHUMG00000090323.17 +28230 chr17 HAVANA gene 1494571 1516888 5325.0 - 0 ENSG00000132376.19 protein_coding INPP5K 2 OTTHUMG00000150648.15 +28231 chr17 HAVANA gene 1516931 1518096 542.0 + 0 ENSG00000236618.2 antisense PITPNA-AS1 2 OTTHUMG00000132194.2 +28232 chr17 HAVANA gene 1517718 1562816 4784.0 - 0 ENSG00000174238.14 protein_coding PITPNA 2 OTTHUMG00000177779.10 +28233 chr17 ENSEMBL gene 1604374 1604672 299.0 - 0 ENSG00000243704.3 misc_RNA RN7SL105P 3 +28234 chr17 HAVANA gene 1569267 1628886 10606.0 - 0 ENSG00000167703.14 protein_coding SLC43A2 1 OTTHUMG00000090345.7 ncRNA_host +28235 chr17 HAVANA gene 1633858 1645747 4961.0 - 0 ENSG00000074660.15 protein_coding SCARF1 2 OTTHUMG00000090555.6 +28236 chr17 HAVANA gene 1646145 1650077 2103.0 - 0 ENSG00000167705.11 protein_coding RILP 2 OTTHUMG00000090554.3 +28237 chr17 HAVANA gene 1650629 1684882 11355.0 - 0 ENSG00000174231.16 protein_coding PRPF8 1 OTTHUMG00000090553.6 +28238 chr17 HAVANA gene 1684726 1685151 426.0 + 0 ENSG00000277597.1 antisense AC130343.2 2 OTTHUMG00000186785.1 +28239 chr17 HAVANA gene 1702790 1710438 5971.0 - 0 ENSG00000185561.9 protein_coding TLCD2 1 OTTHUMG00000132477.5 +28240 chr17 ENSEMBL gene 1713903 1713987 85.0 - 0 ENSG00000283824.1 miRNA MIR22 3 +28241 chr17 HAVANA gene 1711493 1717174 2986.0 - 0 ENSG00000186594.14 lincRNA MIR22HG 2 OTTHUMG00000132197.7 ncRNA_host +28242 chr17 HAVANA gene 1725748 1738585 459.0 - 0 ENSG00000262791.1 antisense AC130343.1 2 OTTHUMG00000177532.1 +28243 chr17 HAVANA gene 1716523 1738599 7913.0 + 0 ENSG00000167716.18 protein_coding WDR81 1 OTTHUMG00000153941.8 +28244 chr17 HAVANA gene 1742836 1755268 2348.0 + 0 ENSG00000167711.13 protein_coding SERPINF2 1 OTTHUMG00000090552.5 +28245 chr17 HAVANA gene 1761959 1777574 3069.0 + 0 ENSG00000132386.10 protein_coding SERPINF1 1 OTTHUMG00000090571.6 +28246 chr17 HAVANA gene 1779485 1830634 6777.0 - 0 ENSG00000186532.11 protein_coding SMYD4 2 OTTHUMG00000090570.7 +28247 chr17 HAVANA gene 1858039 1858446 408.0 - 0 ENSG00000108958.4 processed_pseudogene AC130689.1 2 OTTHUMG00000132195.1 +28248 chr17 HAVANA gene 1829702 1900082 5492.0 + 0 ENSG00000132383.11 protein_coding RPA1 1 OTTHUMG00000090579.3 +28249 chr17 HAVANA gene 1995614 2003671 870.0 + 0 ENSG00000262445.3 antisense AC099684.2 2 OTTHUMG00000177763.4 +28250 chr17 HAVANA gene 2017716 2020706 2061.0 + 0 ENSG00000228133.2 antisense AC099684.1 2 OTTHUMG00000132193.2 +28251 chr17 HAVANA gene 2019952 2023664 560.0 - 0 ENSG00000262869.1 sense_intronic AC099684.3 2 OTTHUMG00000177723.1 overlapping_locus +28252 chr17 HAVANA gene 1934677 2025345 3625.0 - 0 ENSG00000185924.6 protein_coding RTN4RL1 2 OTTHUMG00000180184.2 overlapping_locus +28253 chr17 HAVANA gene 2042900 2043425 422.0 - 0 ENSG00000262533.1 antisense AC090617.3 2 OTTHUMG00000177679.1 +28254 chr17 HAVANA gene 2041936 2043430 1122.0 + 0 ENSG00000262664.2 protein_coding OVCA2 2 OTTHUMG00000132471.6 overlapping_locus +28255 chr17 HAVANA gene 2030110 2043430 5757.0 + 0 ENSG00000108963.17 protein_coding DPH1 2 OTTHUMG00000177724.7 overlapping_locus +28256 chr17 HAVANA gene 2043475 2044968 443.0 - 0 ENSG00000263050.1 lincRNA AC090617.5 2 OTTHUMG00000177680.1 +28257 chr17 ENSEMBL gene 2049908 2050008 101.0 - 0 ENSG00000267200.1 miRNA MIR132 3 +28258 chr17 ENSEMBL gene 2050271 2050380 110.0 - 0 ENSG00000267195.1 miRNA MIR212 3 +28259 chr17 HAVANA gene 2054154 2063241 8108.0 + 0 ENSG00000177374.12 protein_coding HIC1 2 OTTHUMG00000177635.10 +28260 chr17 HAVANA gene 2072823 2072956 134.0 + 0 ENSG00000280333.1 TEC AC090617.9 2 OTTHUMG00000178111.1 +28261 chr17 HAVANA gene 2089681 2101560 528.0 + 0 ENSG00000262810.1 antisense AC090617.4 2 OTTHUMG00000177681.1 overlapping_locus +28262 chr17 HAVANA gene 2101542 2101667 126.0 + 0 ENSG00000279040.1 TEC AC090617.6 2 OTTHUMG00000178113.1 overlapping_locus +28263 chr17 HAVANA gene 2117626 2117772 147.0 + 0 ENSG00000279562.1 TEC AC090617.8 2 OTTHUMG00000177683.1 +28264 chr17 HAVANA gene 2122342 2122508 167.0 - 0 ENSG00000279340.1 TEC AC090617.7 2 OTTHUMG00000177684.1 overlapping_locus +28265 chr17 HAVANA gene 2127430 2127904 475.0 - 0 ENSG00000262402.1 processed_pseudogene MCUR1P1 1 OTTHUMG00000177685.1 pseudo_consens,overlapping_locus +28266 chr17 ENSEMBL gene 2199762 2200039 278.0 + 0 ENSG00000265777.2 misc_RNA RN7SL624P 3 +28267 chr17 HAVANA gene 2213697 2214414 404.0 + 0 ENSG00000236838.2 antisense AC090617.2 1 OTTHUMG00000132219.2 +28268 chr17 HAVANA gene 2215482 2216015 323.0 - 0 ENSG00000236457.1 sense_intronic AC090617.1 2 OTTHUMG00000132217.1 overlapping_locus +28269 chr17 HAVANA gene 2232680 2233610 710.0 + 0 ENSG00000225084.1 antisense AL450226.1 2 OTTHUMG00000132218.1 +28270 chr17 HAVANA gene 2235713 2236086 374.0 - 0 ENSG00000278941.1 TEC SMG6-IT1 2 OTTHUMG00000177860.2 overlapping_locus +28271 chr17 HAVANA gene 2255719 2256157 439.0 + 0 ENSG00000280242.1 TEC AL450226.2 2 OTTHUMG00000177687.1 +28272 chr17 HAVANA gene 2059839 2303771 10554.0 - 0 ENSG00000070366.13 protein_coding SMG6 1 OTTHUMG00000177578.14 overlapping_locus +28273 chr17 HAVANA gene 2306761 2307715 955.0 + 0 ENSG00000262333.1 processed_pseudogene HNRNPA1P16 1 OTTHUMG00000177701.1 pseudo_consens,overlapping_locus +28274 chr17 HAVANA gene 2303383 2325260 3498.0 + 0 ENSG00000167720.12 protein_coding SRR 2 OTTHUMG00000090583.9 overlapping_locus +28275 chr17 HAVANA gene 2329016 2329237 222.0 - 0 ENSG00000275084.3 snoRNA SNORD91B 2 OTTHUMG00000185960.2 overlapping_locus +28276 chr17 HAVANA gene 2330180 2330370 191.0 - 0 ENSG00000212163.5 snoRNA SNORD91A 2 OTTHUMG00000185961.2 overlapping_locus +28277 chr17 HAVANA gene 2322503 2337507 5545.0 - 0 ENSG00000167721.10 protein_coding TSR1 2 OTTHUMG00000177636.6 ncRNA_host,overlapping_locus +28278 chr17 HAVANA gene 2366589 2366791 203.0 - 0 ENSG00000274758.1 antisense AC006435.3 2 OTTHUMG00000186618.1 +28279 chr17 HAVANA gene 2375061 2379306 1234.0 - 0 ENSG00000263345.1 antisense AC006435.2 2 OTTHUMG00000177761.3 +28280 chr17 HAVANA gene 2337498 2381058 9771.0 + 0 ENSG00000141258.12 protein_coding SGSM2 1 OTTHUMG00000177637.11 +28281 chr17 HAVANA gene 2384847 2386664 1065.0 + 0 ENSG00000262456.1 antisense AC006435.1 2 OTTHUMG00000177562.1 +28282 chr17 HAVANA gene 2384060 2401118 8728.0 - 0 ENSG00000070444.14 protein_coding MNT 1 OTTHUMG00000090603.7 +28283 chr17 HAVANA gene 2424179 2424412 234.0 - 0 ENSG00000279872.1 TEC AC006435.4 2 OTTHUMG00000185963.1 overlapping_locus +28284 chr17 HAVANA gene 2460183 2460294 112.0 - 0 ENSG00000280280.1 TEC AC006435.5 2 OTTHUMG00000177862.2 overlapping_locus +28285 chr17 HAVANA gene 2405562 2511891 8934.0 - 0 ENSG00000127804.12 protein_coding METTL16 1 OTTHUMG00000177564.10 overlapping_locus +28286 chr17 ENSEMBL gene 2557753 2558094 342.0 - 0 ENSG00000243049.3 misc_RNA RN7SL33P 3 +28287 chr17 HAVANA gene 2586330 2587866 1207.0 - 0 ENSG00000262953.1 processed_pseudogene EIF4A1P9 1 OTTHUMG00000177802.1 pseudo_consens +28288 chr17 HAVANA gene 2613284 2613944 661.0 - 0 ENSG00000262480.2 processed_pseudogene SAMD11P1 1 OTTHUMG00000177803.3 pseudo_consens +28289 chr17 HAVANA gene 2639297 2642418 3122.0 + 0 ENSG00000279432.1 TEC AC015799.1 2 OTTHUMG00000185903.1 overlapping_locus +28290 chr17 ENSEMBL gene 2680958 2681236 279.0 + 0 ENSG00000239884.3 misc_RNA RN7SL608P 3 +28291 chr17 HAVANA gene 2683305 2685088 626.0 - 0 ENSG00000272770.1 antisense AC005696.2 2 OTTHUMG00000185904.1 +28292 chr17 HAVANA gene 2593210 2685615 8127.0 + 0 ENSG00000007168.12 protein_coding PAFAH1B1 2 OTTHUMG00000177574.7 ncRNA_host,overlapping_locus +28293 chr17 HAVANA gene 2688473 2688960 303.0 + 0 ENSG00000272911.1 lincRNA AC005696.3 2 OTTHUMG00000185965.1 +28294 chr17 ENSEMBL gene 2692861 2692919 59.0 - 0 ENSG00000273606.1 miRNA MIR6776 3 +28295 chr17 HAVANA gene 2689386 2712663 6900.0 - 0 ENSG00000132361.16 protein_coding CLUH 2 OTTHUMG00000177575.9 ncRNA_host +28296 chr17 HAVANA gene 2712309 2712833 443.0 + 0 ENSG00000262050.1 antisense AC005696.1 2 OTTHUMG00000177804.1 +28297 chr17 HAVANA gene 2720801 2723947 3147.0 - 0 ENSG00000277200.1 lincRNA AC005696.4 2 OTTHUMG00000186619.1 +28298 chr17 HAVANA gene 2748078 2748182 105.0 + 0 ENSG00000272920.1 lincRNA hsa-mir-1253 2 OTTHUMG00000185966.1 +28299 chr17 ENSEMBL gene 2748078 2748182 105.0 - 0 ENSG00000221200.1 miRNA MIR1253 3 +28300 chr17 HAVANA gene 2724411 2749504 885.0 - 0 ENSG00000261963.3 unitary_pseudogene CCDC92B 2 OTTHUMG00000178197.3 +28301 chr17 HAVANA gene 2962248 2965895 2546.0 - 0 ENSG00000262884.1 antisense AC015921.1 2 OTTHUMG00000177666.1 +28302 chr17 HAVANA gene 2755705 3037739 7530.0 + 0 ENSG00000132359.14 protein_coding RAP1GAP2 1 OTTHUMG00000177642.8 +28303 chr17 HAVANA gene 3062669 3063607 939.0 - 0 ENSG00000262628.1 protein_coding OR1D5 2 OTTHUMG00000177676.3 +28304 chr17 HAVANA gene 3088484 3104422 4887.0 - 0 ENSG00000184166.2 protein_coding OR1D2 2 OTTHUMG00000090619.3 +28305 chr17 HAVANA gene 3116427 3117374 948.0 + 0 ENSG00000142163.8 unprocessed_pseudogene OR1E3 2 OTTHUMG00000177823.2 +28306 chr17 HAVANA gene 3126584 3127581 998.0 - 0 ENSG00000183024.3 protein_coding OR1G1 2 OTTHUMG00000090618.2 +28307 chr17 HAVANA gene 3153889 3154882 994.0 - 0 ENSG00000262085.2 polymorphic_pseudogene OR1P1 2 OTTHUMG00000177731.3 +28308 chr17 HAVANA gene 3134969 3177031 792.0 - 0 ENSG00000261848.5 lincRNA AC090282.1 2 OTTHUMG00000177853.1 +28309 chr17 HAVANA gene 3197519 3198448 930.0 + 0 ENSG00000172150.4 protein_coding OR1A2 2 OTTHUMG00000090638.2 +28310 chr17 HAVANA gene 3207539 3218896 6889.0 + 0 ENSG00000172146.2 protein_coding OR1A1 2 OTTHUMG00000090637.3 +28311 chr17 HAVANA gene 3235703 3241614 991.0 + 0 ENSG00000255095.2 transcribed_unprocessed_pseudogene OR1D4 2 OTTHUMG00000166844.2 +28312 chr17 HAVANA gene 3265611 3266541 931.0 + 0 ENSG00000262106.1 unprocessed_pseudogene OR1D3P 2 OTTHUMG00000177805.1 +28313 chr17 HAVANA gene 3291017 3298360 1662.0 - 0 ENSG00000180090.5 protein_coding OR3A1 2 OTTHUMG00000090642.4 +28314 chr17 HAVANA gene 3309986 3311446 1461.0 + 0 ENSG00000180068.10 transcribed_unprocessed_pseudogene OR3A4P 2 OTTHUMG00000132940.9 overlapping_locus +28315 chr17 HAVANA gene 3311218 3311934 717.0 + 0 ENSG00000285760.1 transcribed_unprocessed_pseudogene AC087498.2 2 OTTHUMG00000192643.1 overlapping_locus +28316 chr17 HAVANA gene 3377527 3377602 76.0 - 0 ENSG00000267129.1 unprocessed_pseudogene OR1AC1P 2 OTTHUMG00000179846.1 +28317 chr17 HAVANA gene 3276942 3386317 2674.0 - 0 ENSG00000221882.3 protein_coding OR3A2 2 OTTHUMG00000177667.2 +28318 chr17 HAVANA gene 3385930 3386874 945.0 + 0 ENSG00000180042.5 protein_coding AC087498.1 2 OTTHUMG00000177732.3 +28319 chr17 HAVANA gene 3397104 3398410 1307.0 - 0 ENSG00000180016.2 protein_coding OR1E1 2 OTTHUMG00000090643.1 +28320 chr17 HAVANA gene 3411370 3424070 3812.0 + 0 ENSG00000159961.2 protein_coding OR3A3 2 OTTHUMG00000090649.3 +28321 chr17 HAVANA gene 3432870 3433841 972.0 - 0 ENSG00000127780.3 protein_coding OR1E2 2 OTTHUMG00000090651.3 +28322 chr17 HAVANA gene 3439923 3441844 1922.0 - 0 ENSG00000280268.1 TEC AC025125.1 2 OTTHUMG00000177647.1 overlapping_locus +28323 chr17 HAVANA gene 3472374 3503419 5854.0 + 0 ENSG00000108381.10 protein_coding ASPA 2 OTTHUMG00000090655.4 +28324 chr17 HAVANA gene 3440019 3513852 2860.0 - 0 ENSG00000141255.12 protein_coding SPATA22 1 OTTHUMG00000177609.3 overlapping_locus +28325 chr17 HAVANA gene 3510502 3557995 9780.0 - 0 ENSG00000167723.14 protein_coding TRPV3 2 OTTHUMG00000090695.2 overlapping_locus +28326 chr17 HAVANA gene 3577955 3578853 560.0 - 0 ENSG00000263338.1 sense_intronic AC027796.5 2 OTTHUMG00000177651.1 overlapping_locus +28327 chr17 HAVANA gene 3601761 3602272 512.0 - 0 ENSG00000261916.1 sense_intronic AC027796.1 2 OTTHUMG00000177652.1 overlapping_locus +28328 chr17 HAVANA gene 3565444 3609411 5237.0 - 0 ENSG00000196689.12 protein_coding TRPV1 1 OTTHUMG00000177649.4 overlapping_locus +28329 chr17 HAVANA gene 3619256 3619913 344.0 - 0 ENSG00000262248.1 processed_pseudogene AC027796.2 1 OTTHUMG00000177656.1 pseudo_consens,overlapping_locus +28330 chr17 HAVANA gene 3585149 3636249 4753.0 - 0 ENSG00000262304.2 protein_coding AC027796.3 2 OTTHUMG00000177650.2 overlapping_locus +28331 chr17 HAVANA gene 3608262 3636322 3838.0 - 0 ENSG00000197417.7 protein_coding SHPK 2 OTTHUMG00000090694.3 overlapping_locus +28332 chr17 HAVANA gene 3655621 3658092 874.0 - 0 ENSG00000262903.1 antisense AC027796.4 2 OTTHUMG00000177717.1 +28333 chr17 HAVANA gene 3636468 3661542 3398.0 + 0 ENSG00000040531.14 protein_coding CTNS 1 OTTHUMG00000090693.7 +28334 chr17 HAVANA gene 3665220 3665702 483.0 + 0 ENSG00000240898.1 processed_pseudogene AC132942.1 1 OTTHUMG00000157655.1 pseudo_consens +28335 chr17 HAVANA gene 3662896 3668682 1383.0 - 0 ENSG00000213977.7 protein_coding TAX1BP3 2 OTTHUMG00000090701.2 overlapping_locus +28336 chr17 HAVANA gene 3668815 3669668 769.0 + 0 ENSG00000127774.6 protein_coding EMC6 2 OTTHUMG00000180187.1 +28337 chr17 HAVANA gene 3663063 3696194 5905.0 - 0 ENSG00000257950.3 protein_coding P2RX5-TAX1BP3 2 OTTHUMG00000169623.2 overlapping_locus +28338 chr17 HAVANA gene 3672199 3696404 4190.0 - 0 ENSG00000083454.21 protein_coding P2RX5 2 OTTHUMG00000090700.5 overlapping_locus +28339 chr17 HAVANA gene 3721628 3722488 291.0 + 0 ENSG00000262692.1 antisense AC116914.2 2 OTTHUMG00000177669.1 +28340 chr17 HAVANA gene 3723903 3726699 2797.0 + 0 ENSG00000177602.5 protein_coding HASPIN 2 OTTHUMG00000090703.1 +28341 chr17 HAVANA gene 3729361 3730493 398.0 + 0 ENSG00000262358.1 antisense AC116914.1 2 OTTHUMG00000177670.1 +28342 chr17 HAVANA gene 3714628 3801243 6657.0 - 0 ENSG00000083457.11 protein_coding ITGAE 1 OTTHUMG00000177634.3 +28343 chr17 HAVANA gene 3802165 3846251 14718.0 - 0 ENSG00000074356.16 protein_coding NCBP3 1 OTTHUMG00000177672.3 +28344 chr17 HAVANA gene 3860315 3894891 7424.0 - 0 ENSG00000004660.14 protein_coding CAMKK1 2 OTTHUMG00000090725.2 +28345 chr17 HAVANA gene 3896592 3916500 3970.0 - 0 ENSG00000108405.3 protein_coding P2RX1 2 OTTHUMG00000177673.1 +28346 chr17 HAVANA gene 3923870 3964464 6893.0 - 0 ENSG00000074370.17 protein_coding ATP2A3 2 OTTHUMG00000177674.2 +28347 chr17 HAVANA gene 3977103 3981899 549.0 + 0 ENSG00000263312.1 lincRNA LINC01975 2 OTTHUMG00000177725.1 +28348 chr17 ENSEMBL gene 4056756 4056876 121.0 - 0 ENSG00000252456.1 rRNA_pseudogene RNA5SP434 3 +28349 chr17 HAVANA gene 4004445 4143020 15878.0 - 0 ENSG00000074755.14 protein_coding ZZEF1 2 OTTHUMG00000090741.2 +28350 chr17 HAVANA gene 4163910 4164713 512.0 + 0 ENSG00000263165.1 antisense AC087292.1 2 OTTHUMG00000177728.1 overlapping_locus +28351 chr17 ENSEMBL gene 4186326 4186424 99.0 + 0 ENSG00000251812.1 misc_RNA RF00019 3 +28352 chr17 HAVANA gene 4143168 4187310 2182.0 + 0 ENSG00000167740.9 protein_coding CYB5D2 2 OTTHUMG00000177726.3 ncRNA_host,overlapping_locus +28353 chr17 HAVANA gene 4222091 4223828 1738.0 + 0 ENSG00000263219.1 processed_pseudogene RYKP1 1 OTTHUMG00000177729.1 pseudo_consens +28354 chr17 HAVANA gene 4163907 4263995 14138.0 - 0 ENSG00000185722.17 protein_coding ANKFY1 1 OTTHUMG00000177727.7 +28355 chr17 HAVANA gene 4267691 4268430 740.0 + 0 ENSG00000274363.1 lincRNA AC087742.1 2 OTTHUMG00000186620.1 +28356 chr17 HAVANA gene 4301372 4302698 1327.0 + 0 ENSG00000261868.1 processed_pseudogene MFSD1P1 1 OTTHUMG00000177730.1 pseudo_consens +28357 chr17 ENSEMBL gene 4364164 4364453 290.0 - 0 ENSG00000263882.2 misc_RNA RN7SL774P 3 +28358 chr17 HAVANA gene 4269259 4366628 4539.0 - 0 ENSG00000132388.12 protein_coding UBE2G1 1 OTTHUMG00000177826.3 ncRNA_host +28359 chr17 HAVANA gene 4481966 4486353 1059.0 - 0 ENSG00000262823.1 antisense AC127521.1 2 OTTHUMG00000177738.1 +28360 chr17 HAVANA gene 4433688 4488208 2684.0 + 0 ENSG00000182557.7 protein_coding SPNS3 2 OTTHUMG00000177737.2 +28361 chr17 HAVANA gene 4497394 4499674 370.0 - 0 ENSG00000229782.1 antisense AC118754.1 2 OTTHUMG00000132937.1 +28362 chr17 HAVANA gene 4498838 4539035 4111.0 + 0 ENSG00000183018.8 protein_coding SPNS2 2 OTTHUMG00000177739.4 +28363 chr17 HAVANA gene 4538897 4555631 6203.0 - 0 ENSG00000132382.14 protein_coding MYBBP1A 2 OTTHUMG00000090747.3 +28364 chr17 HAVANA gene 4556927 4560818 3161.0 - 0 ENSG00000167741.10 protein_coding GGT6 2 OTTHUMG00000177827.2 +28365 chr17 HAVANA gene 4565752 4571760 537.0 + 0 ENSG00000262921.1 lincRNA AC118754.2 2 OTTHUMG00000177828.1 +28366 chr17 HAVANA gene 4572206 4572515 310.0 + 0 ENSG00000262519.1 processed_pseudogene TXNP4 1 OTTHUMG00000177829.2 pseudo_consens +28367 chr17 HAVANA gene 4583999 4608319 2470.0 + 0 ENSG00000188176.11 protein_coding SMTNL2 2 OTTHUMG00000132938.3 +28368 chr17 HAVANA gene 4610449 4617650 1273.0 + 0 ENSG00000261863.1 lincRNA LINC01996 2 OTTHUMG00000177830.1 +28369 chr17 ENSEMBL gene 4619749 4619852 104.0 - 0 ENSG00000222429.1 snRNA RNU6-955P 3 +28370 chr17 HAVANA gene 4630902 4642294 3404.0 - 0 ENSG00000161905.12 protein_coding ALOX15 2 OTTHUMG00000090746.3 +28371 chr17 HAVANA gene 4673830 4696831 428.0 + 0 ENSG00000235085.3 antisense AC091153.2 2 OTTHUMG00000132939.3 +28372 chr17 HAVANA gene 4669774 4704337 6577.0 - 0 ENSG00000141456.14 protein_coding PELP1 2 OTTHUMG00000177831.8 +28373 chr17 HAVANA gene 4704816 4705217 402.0 - 0 ENSG00000213939.4 processed_pseudogene AC091153.1 1 OTTHUMG00000157657.1 pseudo_consens +28374 chr17 HAVANA gene 4704230 4705529 472.0 + 0 ENSG00000244184.1 antisense AC091153.3 2 OTTHUMG00000157665.1 +28375 chr17 HAVANA gene 4710489 4721499 4372.0 + 0 ENSG00000141480.17 protein_coding ARRB2 2 OTTHUMG00000090759.5 +28376 chr17 HAVANA gene 4731756 4732371 480.0 - 0 ENSG00000261898.2 antisense AC091153.4 2 OTTHUMG00000177897.2 +28377 chr17 HAVANA gene 4731428 4733610 1477.0 + 0 ENSG00000161920.9 protein_coding MED11 1 OTTHUMG00000177896.3 +28378 chr17 HAVANA gene 4733526 4739922 2794.0 - 0 ENSG00000161921.14 protein_coding CXCL16 2 OTTHUMG00000090761.3 +28379 chr17 HAVANA gene 4740015 4746119 3303.0 + 0 ENSG00000141497.13 protein_coding ZMYND15 2 OTTHUMG00000090760.3 +28380 chr17 HAVANA gene 4771884 4783213 932.0 + 0 ENSG00000142484.6 protein_coding TM4SF5 2 OTTHUMG00000090776.3 +28381 chr17 HAVANA gene 4785285 4786433 803.0 - 0 ENSG00000182853.11 protein_coding VMO1 2 OTTHUMG00000177898.1 +28382 chr17 HAVANA gene 4787057 4789162 2106.0 + 0 ENSG00000280254.1 TEC AC233723.2 2 OTTHUMG00000177930.1 overlapping_locus +28383 chr17 HAVANA gene 4788959 4790390 1023.0 + 0 ENSG00000182327.7 protein_coding GLTPD2 2 OTTHUMG00000177929.1 overlapping_locus +28384 chr17 HAVANA gene 4796144 4798503 1448.0 + 0 ENSG00000142507.9 protein_coding PSMB6 2 OTTHUMG00000090777.3 +28385 chr17 HAVANA gene 4801159 4807013 651.0 - 0 ENSG00000262165.2 protein_coding AC233723.1 2 OTTHUMG00000177931.2 +28386 chr17 HAVANA gene 4807096 4823434 4888.0 + 0 ENSG00000129219.13 protein_coding PLD2 1 OTTHUMG00000090779.6 +28387 chr17 HAVANA gene 4856757 4857374 618.0 - 0 ENSG00000230201.5 processed_pseudogene ATP6V0CP1 1 OTTHUMG00000132925.1 pseudo_consens +28388 chr17 ENSEMBL gene 4882975 4883316 342.0 + 0 ENSG00000264113.2 misc_RNA RN7SL784P 3 +28389 chr17 HAVANA gene 4833388 4898061 7817.0 + 0 ENSG00000141503.15 protein_coding MINK1 2 OTTHUMG00000177932.2 ncRNA_host +28390 chr17 HAVANA gene 4899418 4902932 3408.0 + 0 ENSG00000205710.3 protein_coding C17orf107 2 OTTHUMG00000164838.1 +28391 chr17 HAVANA gene 4897774 4934438 2864.0 - 0 ENSG00000108556.8 protein_coding CHRNE 2 OTTHUMG00000090778.6 +28392 chr17 HAVANA gene 4932297 4935030 2501.0 + 0 ENSG00000185245.7 protein_coding GP1BA 2 OTTHUMG00000177946.1 +28393 chr17 HAVANA gene 4937130 4940251 2669.0 - 0 ENSG00000108528.13 protein_coding SLC25A11 2 OTTHUMG00000099395.6 +28394 chr17 HAVANA gene 4940008 4945222 2744.0 + 0 ENSG00000108523.15 protein_coding RNF167 1 OTTHUMG00000099397.5 +28395 chr17 HAVANA gene 4945652 4949061 1987.0 - 0 ENSG00000108518.7 protein_coding PFN1 2 OTTHUMG00000099396.4 +28396 chr17 HAVANA gene 4948092 4957131 4292.0 + 0 ENSG00000108515.17 protein_coding ENO3 1 OTTHUMG00000099394.7 +28397 chr17 HAVANA gene 4959226 4967872 2831.0 - 0 ENSG00000091640.7 protein_coding SPAG7 1 OTTHUMG00000177733.1 +28398 chr17 HAVANA gene 4967995 4968822 474.0 + 0 ENSG00000262429.1 antisense AC004771.4 2 OTTHUMG00000177764.1 +28399 chr17 ENSEMBL gene 4969702 4969771 70.0 - 0 ENSG00000274300.1 miRNA MIR6864 3 +28400 chr17 ENSEMBL gene 4970086 4970150 65.0 - 0 ENSG00000278517.1 miRNA MIR6865 3 +28401 chr17 HAVANA gene 4972851 4974681 439.0 + 0 ENSG00000234203.1 antisense AC004771.2 2 OTTHUMG00000177734.1 +28402 chr17 HAVANA gene 4986466 4987324 542.0 + 0 ENSG00000262678.1 antisense AC004771.5 2 OTTHUMG00000177765.1 +28403 chr17 HAVANA gene 4967992 4987652 5999.0 - 0 ENSG00000108509.20 protein_coding CAMTA2 1 OTTHUMG00000099417.5 ncRNA_host +28404 chr17 HAVANA gene 4987706 4988446 551.0 + 0 ENSG00000262227.1 antisense AC004771.3 2 OTTHUMG00000177767.1 +28405 chr17 HAVANA gene 4988130 4997610 1553.0 - 0 ENSG00000196388.8 protein_coding INCA1 2 OTTHUMG00000177768.1 +28406 chr17 HAVANA gene 5019214 5020093 583.0 - 0 ENSG00000227495.1 antisense AC004771.1 1 OTTHUMG00000132924.2 +28407 chr17 HAVANA gene 4997948 5028401 8580.0 + 0 ENSG00000129250.11 protein_coding KIF1C 2 OTTHUMG00000099451.3 +28408 chr17 HAVANA gene 5032600 5052009 3934.0 - 0 ENSG00000132517.15 protein_coding SLC52A1 1 OTTHUMG00000099448.3 +28409 chr17 HAVANA gene 5060356 5062123 416.0 + 0 ENSG00000262495.1 processed_pseudogene AC012146.2 2 OTTHUMG00000177797.1 +28410 chr17 HAVANA gene 5075678 5078113 490.0 - 0 ENSG00000262693.1 antisense AC012146.3 2 OTTHUMG00000177798.1 +28411 chr17 HAVANA gene 5078248 5096374 5206.0 + 0 ENSG00000180787.5 protein_coding ZFP3 2 OTTHUMG00000177799.1 +28412 chr17 HAVANA gene 5111468 5115004 2006.0 + 0 ENSG00000234327.7 processed_transcript AC012146.1 2 OTTHUMG00000132913.2 +28413 chr17 HAVANA gene 5105541 5123116 2794.0 - 0 ENSG00000167840.13 protein_coding ZNF232 2 OTTHUMG00000099450.2 +28414 chr17 HAVANA gene 5126740 5127010 271.0 - 0 ENSG00000262855.1 processed_pseudogene AC012146.4 2 OTTHUMG00000177800.1 +28415 chr17 HAVANA gene 5116438 5175034 11270.0 + 0 ENSG00000129204.16 protein_coding USP6 2 OTTHUMG00000099449.2 +28416 chr17 HAVANA gene 5179536 5191883 5314.0 - 0 ENSG00000180626.9 protein_coding ZNF594 2 OTTHUMG00000132059.4 +28417 chr17 HAVANA gene 5208961 5234860 4208.0 - 0 ENSG00000161929.14 protein_coding SCIMP 2 OTTHUMG00000132914.2 +28418 chr17 HAVANA gene 5240508 5241543 498.0 - 0 ENSG00000263164.1 lincRNA AC087500.2 2 OTTHUMG00000177869.1 +28419 chr17 HAVANA gene 5192084 5248069 2190.0 + 0 ENSG00000261879.6 antisense AC087500.1 2 OTTHUMG00000177801.3 +28420 chr17 HAVANA gene 5364315 5371626 512.0 - 0 ENSG00000263220.1 antisense AC015727.1 2 OTTHUMG00000177871.1 overlapping_locus +28421 chr17 HAVANA gene 5282265 5385812 6531.0 + 0 ENSG00000029725.16 protein_coding RABEP1 1 OTTHUMG00000177870.5 +28422 chr17 HAVANA gene 5360963 5420160 5294.0 - 0 ENSG00000108559.11 protein_coding NUP88 1 OTTHUMG00000099453.4 overlapping_locus +28423 chr17 HAVANA gene 5425139 5432876 1938.0 - 0 ENSG00000263272.1 antisense AC004148.2 2 OTTHUMG00000177873.1 overlapping_locus +28424 chr17 HAVANA gene 5419641 5432876 7430.0 + 0 ENSG00000129197.14 protein_coding RPAIN 2 OTTHUMG00000177872.2 +28425 chr17 HAVANA gene 5432777 5448830 2335.0 - 0 ENSG00000108561.8 protein_coding C1QBP 1 OTTHUMG00000177875.3 overlapping_locus +28426 chr17 HAVANA gene 5440912 5469060 5872.0 - 0 ENSG00000005100.12 protein_coding DHX33 1 OTTHUMG00000102041.2 overlapping_locus +28427 chr17 HAVANA gene 5469092 5470360 398.0 + 0 ENSG00000262099.1 lincRNA AC004148.1 2 OTTHUMG00000177876.1 +28428 chr17 HAVANA gene 5471251 5486811 6386.0 - 0 ENSG00000072849.10 protein_coding DERL2 2 OTTHUMG00000102040.4 +28429 chr17 HAVANA gene 5486285 5490814 3157.0 + 0 ENSG00000167842.15 protein_coding MIS12 2 OTTHUMG00000102042.3 +28430 chr17 HAVANA gene 5512040 5512537 498.0 - 0 ENSG00000282980.1 processed_pseudogene AC055839.1 1 OTTHUMG00000191503.1 pseudo_consens +28431 chr17 HAVANA gene 5499427 5619424 12808.0 - 0 ENSG00000091592.15 protein_coding NLRP1 2 OTTHUMG00000132419.7 +28432 chr17 HAVANA gene 5730289 5731085 797.0 + 0 ENSG00000262961.1 processed_pseudogene AC006236.1 1 OTTHUMG00000177819.3 pseudo_consens +28433 chr17 HAVANA gene 5772234 5930696 1821.0 + 0 ENSG00000284837.1 lincRNA AC007846.1 2 OTTHUMG00000192451.1 overlapping_locus +28434 chr17 HAVANA gene 5772926 6080792 759.0 + 0 ENSG00000285471.1 protein_coding AC007846.2 2 OTTHUMG00000192452.1 overlapping_locus +28435 chr17 HAVANA gene 6057807 6124427 7136.0 + 0 ENSG00000179314.14 protein_coding WSCD1 2 OTTHUMG00000177794.6 +28436 chr17 HAVANA gene 6189361 6190541 591.0 - 0 ENSG00000262231.1 processed_transcript AC104770.1 2 OTTHUMG00000177818.1 +28437 chr17 ENSEMBL gene 6207163 6207269 107.0 + 0 ENSG00000206618.1 snRNA RNU6-1264P 3 +28438 chr17 HAVANA gene 6322413 6323228 476.0 - 0 ENSG00000262609.1 processed_pseudogene BTF3P14 1 OTTHUMG00000177820.1 pseudo_consens +28439 chr17 HAVANA gene 6373833 6375080 756.0 - 0 ENSG00000285593.1 lincRNA AC055872.2 2 OTTHUMG00000192863.1 +28440 chr17 HAVANA gene 6417685 6418264 278.0 + 0 ENSG00000262818.1 processed_pseudogene AC055872.1 2 OTTHUMG00000177821.1 +28441 chr17 HAVANA gene 6393693 6435199 3985.0 - 0 ENSG00000129221.15 protein_coding AIPL1 2 OTTHUMG00000102043.6 +28442 chr17 HAVANA gene 6444415 6451469 2823.0 + 0 ENSG00000129195.15 protein_coding PIMREG 1 OTTHUMG00000177832.5 +28443 chr17 ENSEMBL gene 6521131 6521412 282.0 + 0 ENSG00000274860.1 misc_RNA RF00017 3 +28444 chr17 HAVANA gene 6451264 6556494 10609.0 - 0 ENSG00000091622.15 protein_coding PITPNM3 1 OTTHUMG00000102039.3 +28445 chr17 ENSEMBL gene 6600944 6601051 108.0 - 0 ENSG00000200914.1 rRNA_pseudogene RNA5SP435 3 +28446 chr17 HAVANA gene 6636780 6640316 3537.0 - 0 ENSG00000282936.1 TEC AC004706.3 2 OTTHUMG00000191541.1 +28447 chr17 HAVANA gene 6578148 6640927 6299.0 - 0 ENSG00000198920.9 protein_coding KIAA0753 2 OTTHUMG00000177928.5 +28448 chr17 HAVANA gene 6640758 6644541 3784.0 + 0 ENSG00000129235.10 protein_coding TXNDC17 1 OTTHUMG00000102053.2 +28449 chr17 HAVANA gene 6643315 6651634 2103.0 - 0 ENSG00000108590.10 protein_coding MED31 1 OTTHUMG00000102051.2 +28450 chr17 HAVANA gene 6653464 6655009 879.0 - 0 ENSG00000261996.1 lincRNA AC004706.1 2 OTTHUMG00000177865.1 +28451 chr17 ENSEMBL gene 6655449 6655502 54.0 + 0 ENSG00000283301.1 miRNA MIR4520-2 3 +28452 chr17 ENSEMBL gene 6655440 6655509 70.0 - 0 ENSG00000264468.1 miRNA MIR4520-1 3 +28453 chr17 HAVANA gene 6651718 6693202 2474.0 + 0 ENSG00000256806.5 protein_coding C17orf100 2 OTTHUMG00000188340.3 ncRNA_host,overlapping_locus +28454 chr17 HAVANA gene 6657034 6693577 4151.0 + 0 ENSG00000274114.2 transcribed_unprocessed_pseudogene ALOX15P1 1 OTTHUMG00000187904.2 pseudo_consens,overlapping_locus +28455 chr17 HAVANA gene 6684713 6713567 9020.0 - 0 ENSG00000141485.16 protein_coding SLC13A5 1 OTTHUMG00000102052.5 +28456 chr17 HAVANA gene 6749685 6749978 294.0 - 0 ENSG00000262990.1 processed_pseudogene AC004706.2 2 OTTHUMG00000177868.1 +28457 chr17 HAVANA gene 6749718 6750188 471.0 + 0 ENSG00000244283.1 processed_pseudogene RPL23AP73 1 OTTHUMG00000157675.1 pseudo_consens +28458 chr17 HAVANA gene 6755447 6775647 6615.0 + 0 ENSG00000132530.16 protein_coding XAF1 1 OTTHUMG00000177908.9 +28459 chr17 HAVANA gene 6772831 6776116 3286.0 - 0 ENSG00000279296.1 TEC PRAL 2 OTTHUMG00000177909.1 +28460 chr17 HAVANA gene 6776223 6797101 2918.0 + 0 ENSG00000177294.6 protein_coding FBXO39 2 OTTHUMG00000102062.2 +28461 chr17 HAVANA gene 6789133 6831761 3847.0 - 0 ENSG00000167858.12 protein_coding TEKT1 1 OTTHUMG00000102063.4 +28462 chr17 HAVANA gene 6927472 6928191 720.0 - 0 ENSG00000262503.1 processed_pseudogene AC027763.1 1 OTTHUMG00000177877.1 pseudo_consens,overlapping_locus +28463 chr17 HAVANA gene 6853861 6954107 5655.0 + 0 ENSG00000262943.7 transcribed_unprocessed_pseudogene ALOX12P2 2 OTTHUMG00000177324.4 +28464 chr17 HAVANA gene 6954098 6978960 539.0 - 0 ENSG00000263316.1 antisense AC027763.2 2 OTTHUMG00000177889.1 overlapping_locus +28465 chr17 HAVANA gene 6994642 6995189 343.0 - 0 ENSG00000262089.1 lincRNA AC040977.1 2 OTTHUMG00000177906.1 overlapping_locus +28466 chr17 HAVANA gene 6996065 7010736 2616.0 + 0 ENSG00000108839.11 protein_coding ALOX12 2 OTTHUMG00000102088.5 +28467 chr17 HAVANA gene 6876635 7012349 3217.0 - 0 ENSG00000215067.9 antisense ALOX12-AS1 1 OTTHUMG00000132903.8 overlapping_locus +28468 chr17 HAVANA gene 7012417 7014532 1789.0 + 0 ENSG00000219200.11 protein_coding RNASEK 1 OTTHUMG00000170145.4 overlapping_locus +28469 chr17 HAVANA gene 7012635 7017520 1947.0 + 0 ENSG00000161939.19 protein_coding RNASEK-C17orf49 2 OTTHUMG00000170146.6 overlapping_locus +28470 chr17 HAVANA gene 7014495 7017525 2628.0 + 0 ENSG00000258315.5 protein_coding C17orf49 2 OTTHUMG00000170147.2 overlapping_locus +28471 chr17 ENSEMBL gene 7017615 7017701 87.0 - 0 ENSG00000284112.1 miRNA MIR195 3 +28472 chr17 ENSEMBL gene 7017911 7018022 112.0 - 0 ENSG00000284027.1 miRNA MIR497 3 +28473 chr17 HAVANA gene 6985494 7019414 498.0 - 0 ENSG00000267047.1 antisense AC040977.2 2 OTTHUMG00000180218.1 ncRNA_host,overlapping_locus +28474 chr17 HAVANA gene 7015818 7019659 3842.0 - 0 ENSG00000267532.5 antisense MIR497HG 2 OTTHUMG00000180219.1 ncRNA_host,overlapping_locus +28475 chr17 HAVANA gene 7023020 7030290 4373.0 + 0 ENSG00000161940.10 protein_coding BCL6B 2 OTTHUMG00000177882.4 +28476 chr17 HAVANA gene 7036075 7040121 2087.0 + 0 ENSG00000174327.6 protein_coding SLC16A13 2 OTTHUMG00000102089.2 +28477 chr17 HAVANA gene 7041630 7043923 2041.0 - 0 ENSG00000174326.11 protein_coding SLC16A11 2 OTTHUMG00000102087.3 +28478 chr17 HAVANA gene 7058934 7059204 271.0 + 0 ENSG00000262067.1 processed_pseudogene AC120057.1 1 OTTHUMG00000177938.1 pseudo_consens +28479 chr17 HAVANA gene 7074537 7080307 2469.0 - 0 ENSG00000132514.13 protein_coding CLEC10A 1 OTTHUMG00000177939.4 +28480 chr17 HAVANA gene 7101322 7115700 2490.0 - 0 ENSG00000161944.16 protein_coding ASGR2 2 OTTHUMG00000102158.4 +28481 chr17 HAVANA gene 7140930 7141592 663.0 + 0 ENSG00000213876.4 processed_pseudogene RPL7AP64 1 OTTHUMG00000157687.1 pseudo_consens +28482 chr17 HAVANA gene 7173431 7179564 3748.0 - 0 ENSG00000141505.11 protein_coding ASGR1 2 OTTHUMG00000102159.6 +28483 chr17 HAVANA gene 7192295 7192448 154.0 - 0 ENSG00000279812.1 TEC AC120057.4 2 OTTHUMG00000177965.1 overlapping_locus +28484 chr17 HAVANA gene 7187169 7219841 10317.0 - 0 ENSG00000132535.19 protein_coding DLG4 1 OTTHUMG00000134327.10 overlapping_locus +28485 chr17 ENSEMBL gene 7223297 7223379 83.0 - 0 ENSG00000199053.3 miRNA MIR324 3 +28486 chr17 HAVANA gene 7217125 7225273 4865.0 + 0 ENSG00000072778.19 protein_coding ACADVL 2 OTTHUMG00000102157.24 +28487 chr17 HAVANA gene 7225341 7234545 5350.0 - 0 ENSG00000004975.11 protein_coding DVL2 2 OTTHUMG00000102155.4 +28488 chr17 HAVANA gene 7235028 7239722 2783.0 - 0 ENSG00000040633.12 protein_coding PHF23 1 OTTHUMG00000177972.5 +28489 chr17 HAVANA gene 7240014 7242770 2266.0 - 0 ENSG00000170296.9 protein_coding GABARAP 2 OTTHUMG00000102156.3 overlapping_locus +28490 chr17 HAVANA gene 7242200 7243814 1615.0 + 0 ENSG00000279641.1 TEC AC120057.3 2 OTTHUMG00000178009.2 +28491 chr17 HAVANA gene 7240427 7244635 776.0 - 0 ENSG00000262526.2 protein_coding AC120057.2 2 OTTHUMG00000178096.2 overlapping_locus +28492 chr17 HAVANA gene 7243591 7252491 2584.0 - 0 ENSG00000175826.11 protein_coding CTDNEP1 2 OTTHUMG00000102180.6 overlapping_locus +28493 chr17 HAVANA gene 7251416 7259940 2768.0 + 0 ENSG00000170291.14 protein_coding ELP5 1 OTTHUMG00000177974.7 +28494 chr17 HAVANA gene 7246829 7262089 489.0 - 0 ENSG00000262302.1 protein_coding AC003688.1 2 OTTHUMG00000178008.1 overlapping_locus +28495 chr17 HAVANA gene 7259903 7263983 2492.0 - 0 ENSG00000181885.18 protein_coding CLDN7 1 OTTHUMG00000178005.4 overlapping_locus +28496 chr17 ENSEMBL gene 7266055 7266166 112.0 - 0 ENSG00000202251.1 misc_RNA RF00019 3 +28497 chr17 HAVANA gene 7282947 7284071 415.0 - 0 ENSG00000263342.1 antisense AC003688.2 2 OTTHUMG00000177991.1 +28498 chr17 HAVANA gene 7281667 7288257 4046.0 + 0 ENSG00000181856.14 protein_coding SLC2A4 2 OTTHUMG00000102181.5 +28499 chr17 HAVANA gene 7288252 7294615 4618.0 - 0 ENSG00000006047.12 protein_coding YBX2 2 OTTHUMG00000177992.2 +28500 chr17 HAVANA gene 7306999 7312463 2815.0 + 0 ENSG00000132507.17 protein_coding EIF5A 2 OTTHUMG00000102197.7 +28501 chr17 HAVANA gene 7311324 7315564 3089.0 - 0 ENSG00000132522.15 protein_coding GPS2 2 OTTHUMG00000102198.9 overlapping_locus +28502 chr17 HAVANA gene 7312661 7319174 2571.0 - 0 ENSG00000261915.6 protein_coding AC026954.2 2 OTTHUMG00000178134.2 overlapping_locus +28503 chr17 HAVANA gene 7315628 7329393 6170.0 - 0 ENSG00000215041.9 protein_coding NEURL4 2 OTTHUMG00000132319.6 overlapping_locus +28504 chr17 HAVANA gene 7330452 7335413 1293.0 + 0 ENSG00000224647.2 unitary_pseudogene AC026954.1 2 OTTHUMG00000132361.2 +28505 chr17 HAVANA gene 7336529 7351478 7421.0 + 0 ENSG00000072818.11 protein_coding ACAP1 1 OTTHUMG00000102199.9 +28506 chr17 HAVANA gene 7351889 7354944 3056.0 + 0 ENSG00000213859.5 protein_coding KCTD11 2 OTTHUMG00000132061.3 +28507 chr17 HAVANA gene 7352687 7354944 421.0 - 0 ENSG00000263171.1 antisense AC026954.3 2 OTTHUMG00000178133.1 +28508 chr17 HAVANA gene 7355123 7357219 1224.0 + 0 ENSG00000182896.12 protein_coding TMEM95 2 OTTHUMG00000132899.4 +28509 chr17 HAVANA gene 7380534 7389774 3860.0 + 0 ENSG00000174292.12 protein_coding TNK1 2 OTTHUMG00000178174.5 +28510 chr17 HAVANA gene 7389727 7394843 2834.0 - 0 ENSG00000187838.16 protein_coding PLSCR3 1 OTTHUMG00000178169.5 overlapping_locus +28511 chr17 HAVANA gene 7389734 7404097 2557.0 - 0 ENSG00000262481.5 protein_coding TMEM256-PLSCR3 2 OTTHUMG00000178150.4 overlapping_locus +28512 chr17 HAVANA gene 7402975 7404137 707.0 - 0 ENSG00000205544.3 protein_coding TMEM256 2 OTTHUMG00000132900.3 overlapping_locus +28513 chr17 HAVANA gene 7404874 7419860 5550.0 + 0 ENSG00000169992.9 protein_coding NLGN2 1 OTTHUMG00000108138.3 +28514 chr17 HAVANA gene 7420360 7421632 982.0 + 0 ENSG00000181323.7 protein_coding SPEM1 2 OTTHUMG00000178189.1 overlapping_locus +28515 chr17 HAVANA gene 7425615 7427568 1651.0 + 0 ENSG00000184560.7 protein_coding SPEM2 2 OTTHUMG00000178190.2 overlapping_locus +28516 chr17 HAVANA gene 7428863 7432762 3631.0 + 0 ENSG00000283439.2 protein_coding SPEM3 2 OTTHUMG00000191681.2 +28517 chr17 HAVANA gene 7436557 7437523 327.0 - 0 ENSG00000262624.1 antisense AC113189.1 2 OTTHUMG00000178213.1 +28518 chr17 HAVANA gene 7435443 7437679 2129.0 + 0 ENSG00000181284.2 protein_coding TMEM102 2 OTTHUMG00000132901.1 overlapping_locus +28519 chr17 HAVANA gene 7439159 7443327 330.0 - 0 ENSG00000263301.1 antisense AC113189.3 2 OTTHUMG00000178214.1 +28520 chr17 HAVANA gene 7420103 7444081 1975.0 + 0 ENSG00000262880.1 processed_transcript AC113189.2 2 OTTHUMG00000178212.1 overlapping_locus +28521 chr17 HAVANA gene 7438273 7444937 5565.0 + 0 ENSG00000161958.10 protein_coding FGF11 2 OTTHUMG00000108136.4 overlapping_locus +28522 chr17 HAVANA gene 7439506 7445966 5553.0 + 0 ENSG00000272884.1 processed_transcript AC113189.4 2 OTTHUMG00000186449.1 overlapping_locus +28523 chr17 HAVANA gene 7445061 7457707 4329.0 + 0 ENSG00000170175.10 protein_coding CHRNB1 1 OTTHUMG00000108139.4 overlapping_locus +28524 chr17 HAVANA gene 7481332 7483496 1697.0 + 0 ENSG00000259224.2 protein_coding SLC35G6 2 OTTHUMG00000187017.1 +28525 chr17 HAVANA gene 7459366 7484263 6126.0 - 0 ENSG00000174282.11 protein_coding ZBTB4 2 OTTHUMG00000108137.4 +28526 chr17 HAVANA gene 7484366 7514616 8355.0 + 0 ENSG00000181222.15 protein_coding POLR2A 2 OTTHUMG00000177594.4 reference_genome_error +28527 chr17 ENSEMBL gene 7537096 7537196 101.0 - 0 ENSG00000201489.1 misc_RNA RF00019 3 +28528 chr17 HAVANA gene 7548891 7557890 1879.0 + 0 ENSG00000239697.10 protein_coding TNFSF12 2 OTTHUMG00000108148.6 overlapping_locus +28529 chr17 HAVANA gene 7557820 7558245 426.0 - 0 ENSG00000276384.1 antisense AC016876.3 2 OTTHUMG00000186623.1 +28530 chr17 HAVANA gene 7549099 7561601 1816.0 + 0 ENSG00000248871.1 protein_coding TNFSF12-TNFSF13 2 OTTHUMG00000161573.1 overlapping_locus +28531 chr17 HAVANA gene 7558292 7561608 2276.0 + 0 ENSG00000161955.16 protein_coding TNFSF13 2 OTTHUMG00000108145.5 overlapping_locus +28532 chr17 HAVANA gene 7561875 7571969 3668.0 + 0 ENSG00000161956.12 protein_coding SENP3 1 OTTHUMG00000178333.5 overlapping_locus +28533 chr17 ENSEMBL gene 7574713 7574847 135.0 + 0 ENSG00000209582.1 snoRNA SNORA48 3 +28534 chr17 ENSEMBL gene 7576811 7576952 142.0 + 0 ENSG00000238917.1 snoRNA SNORD10 3 +28535 chr17 ENSEMBL gene 7577955 7578091 137.0 + 0 ENSG00000277985.1 snoRNA SNORA67 3 +28536 chr17 HAVANA gene 7563287 7578715 3519.0 + 0 ENSG00000277957.1 protein_coding SENP3-EIF4A1 2 OTTHUMG00000178334.3 ncRNA_host,overlapping_locus +28537 chr17 HAVANA gene 7572706 7579005 5316.0 + 0 ENSG00000161960.14 protein_coding EIF4A1 2 OTTHUMG00000108149.15 ncRNA_host,overlapping_locus +28538 chr17 HAVANA gene 7572826 7582024 4554.0 + 0 ENSG00000264772.6 processed_transcript AC016876.2 2 OTTHUMG00000178274.1 ncRNA_host,overlapping_locus +28539 chr17 HAVANA gene 7579467 7582113 2189.0 + 0 ENSG00000129226.13 protein_coding CD68 2 OTTHUMG00000108146.5 overlapping_locus +28540 chr17 HAVANA gene 7581964 7584072 1058.0 - 0 ENSG00000233223.2 antisense AC016876.1 2 OTTHUMG00000132895.2 +28541 chr17 HAVANA gene 7588178 7590170 1541.0 - 0 ENSG00000129194.7 protein_coding SOX15 2 OTTHUMG00000178146.1 +28542 chr17 HAVANA gene 7583529 7592789 3270.0 + 0 ENSG00000129255.15 protein_coding MPDU1 1 OTTHUMG00000108147.10 +28543 chr17 HAVANA gene 7591230 7614871 4331.0 - 0 ENSG00000129245.11 protein_coding FXR2 1 OTTHUMG00000178237.2 +28544 chr17 HAVANA gene 7626234 7627876 1643.0 - 0 ENSG00000141504.11 protein_coding SAT2 2 OTTHUMG00000108152.3 +28545 chr17 HAVANA gene 7613946 7633383 1972.0 + 0 ENSG00000129214.14 protein_coding SHBG 2 OTTHUMG00000108153.5 +28546 chr17 HAVANA gene 7646627 7657768 3276.0 + 0 ENSG00000129244.8 protein_coding ATP1B2 2 OTTHUMG00000178018.2 +28547 chr17 HAVANA gene 7661779 7687550 4576.0 - 0 ENSG00000141510.17 protein_coding TP53 2 OTTHUMG00000162125.10 overlapping_locus +28548 chr17 HAVANA gene 7686071 7703502 5087.0 + 0 ENSG00000141499.16 protein_coding WRAP53 1 OTTHUMG00000134323.4 +28549 chr17 HAVANA gene 7705202 7711378 3222.0 + 0 ENSG00000108947.4 protein_coding EFNB3 2 OTTHUMG00000108161.1 +28550 chr17 HAVANA gene 7754320 7754976 657.0 + 0 ENSG00000240480.1 transcribed_processed_pseudogene RPL29P2 1 OTTHUMG00000157692.1 pseudo_consens,overlapping_locus +28551 chr17 HAVANA gene 7717354 7833744 17231.0 + 0 ENSG00000183914.14 protein_coding DNAH2 1 OTTHUMG00000178020.2 overlapping_locus +28552 chr17 HAVANA gene 7839904 7854796 7258.0 + 0 ENSG00000132510.10 protein_coding KDM6B 1 OTTHUMG00000178021.2 +28553 chr17 HAVANA gene 7855065 7856099 875.0 + 0 ENSG00000167874.6 protein_coding TMEM88 1 OTTHUMG00000178022.1 +28554 chr17 HAVANA gene 7857746 7862282 3980.0 + 0 ENSG00000182224.11 protein_coding CYB5D1 2 OTTHUMG00000178175.1 overlapping_locus +28555 chr17 HAVANA gene 7858943 7866083 7141.0 + 0 ENSG00000280046.1 TEC AC104581.4 2 OTTHUMG00000178176.1 overlapping_locus +28556 chr17 HAVANA gene 7856685 7885238 1943.0 - 0 ENSG00000183011.13 protein_coding NAA38 1 OTTHUMG00000178023.3 +28557 chr17 ENSEMBL gene 7906122 7906260 139.0 + 0 ENSG00000252835.1 scaRNA SCARNA21 3 +28558 chr17 HAVANA gene 7884806 7912760 9758.0 + 0 ENSG00000170004.16 protein_coding CHD3 1 OTTHUMG00000150427.4 ncRNA_host +28559 chr17 HAVANA gene 7913324 7916276 2953.0 - 0 ENSG00000179859.9 protein_coding RNF227 2 OTTHUMG00000132873.5 +28560 chr17 HAVANA gene 7921859 7929803 4580.0 - 0 ENSG00000170049.9 protein_coding KCNAB3 2 OTTHUMG00000108170.2 overlapping_locus +28561 chr17 HAVANA gene 7925931 7930622 348.0 - 0 ENSG00000262730.1 protein_coding AC104581.2 2 OTTHUMG00000178177.1 overlapping_locus +28562 chr17 HAVANA gene 7930345 7932123 1171.0 - 0 ENSG00000170043.11 protein_coding TRAPPC1 2 OTTHUMG00000108171.3 overlapping_locus +28563 chr17 HAVANA gene 7932101 7949918 6234.0 + 0 ENSG00000170037.13 protein_coding CNTROB 2 OTTHUMG00000172932.4 +28564 chr17 HAVANA gene 7954868 7955622 430.0 + 0 ENSG00000262492.1 processed_pseudogene AC104581.1 1 OTTHUMG00000178226.1 pseudo_consens +28565 chr17 HAVANA gene 8013327 8016378 3052.0 - 0 ENSG00000279174.1 TEC AC104581.3 2 OTTHUMG00000178227.1 +28566 chr17 HAVANA gene 8002594 8020339 4040.0 + 0 ENSG00000132518.6 protein_coding GUCY2D 2 OTTHUMG00000108169.2 +28567 chr17 HAVANA gene 8039017 8049134 3028.0 + 0 ENSG00000179593.15 protein_coding ALOX15B 1 OTTHUMG00000108181.4 +28568 chr17 HAVANA gene 8056225 8057621 517.0 - 0 ENSG00000263427.1 lincRNA AC129492.2 2 OTTHUMG00000178304.1 +28569 chr17 HAVANA gene 8063936 8072533 1305.0 + 0 ENSG00000275011.1 unprocessed_pseudogene AC129492.6 2 OTTHUMG00000187905.1 +28570 chr17 HAVANA gene 8079482 8081565 1804.0 + 0 ENSG00000214999.3 antisense AC129492.1 2 OTTHUMG00000132872.1 +28571 chr17 HAVANA gene 8072636 8087716 2746.0 - 0 ENSG00000179477.10 protein_coding ALOX12B 2 OTTHUMG00000108180.4 +28572 chr17 ENSEMBL gene 8088056 8088147 92.0 + 0 ENSG00000264005.1 miRNA MIR4314 3 +28573 chr17 HAVANA gene 8095900 8119047 3760.0 - 0 ENSG00000179148.9 protein_coding ALOXE3 2 OTTHUMG00000108179.2 +28574 chr17 HAVANA gene 8120590 8124092 1868.0 - 0 ENSG00000179111.8 protein_coding HES7 2 OTTHUMG00000178316.2 +28575 chr17 ENSEMBL gene 8144994 8145071 78.0 - 0 ENSG00000284117.1 miRNA MIR6883 3 +28576 chr17 HAVANA gene 8140472 8156506 7002.0 - 0 ENSG00000179094.15 protein_coding PER1 1 OTTHUMG00000178317.4 ncRNA_host,overlapping_locus +28577 chr17 HAVANA gene 8150816 8162975 460.0 - 0 ENSG00000263620.1 protein_coding AC129492.3 2 OTTHUMG00000178326.2 overlapping_locus +28578 chr17 HAVANA gene 8159149 8163546 3268.0 - 0 ENSG00000220205.8 protein_coding VAMP2 2 OTTHUMG00000150254.2 overlapping_locus +28579 chr17 ENSEMBL gene 8173454 8173587 134.0 - 0 ENSG00000200463.1 snoRNA SNORD118 3 +28580 chr17 HAVANA gene 8173237 8176399 3163.0 - 0 ENSG00000179029.14 protein_coding TMEM107 1 OTTHUMG00000166276.2 ncRNA_host +28581 chr17 HAVANA gene 8176812 8182812 465.0 + 0 ENSG00000266824.1 lincRNA AC129492.4 2 OTTHUMG00000178442.1 +28582 chr17 ENSEMBL gene 8186945 8187004 60.0 + 0 ENSG00000283160.1 miRNA MIR4521 3 +28583 chr17 HAVANA gene 8188933 8189688 756.0 + 0 ENSG00000279152.1 TEC AC129492.7 2 OTTHUMG00000192074.1 +28584 chr17 HAVANA gene 8188333 8190907 2575.0 - 0 ENSG00000196544.7 protein_coding BORCS6 2 OTTHUMG00000153930.1 +28585 chr17 HAVANA gene 8199123 8199437 315.0 - 0 ENSG00000271002.1 processed_pseudogene AC129492.5 1 OTTHUMG00000184850.1 pseudo_consens +28586 chr17 HAVANA gene 8204733 8210600 2241.0 - 0 ENSG00000178999.12 protein_coding AURKB 1 OTTHUMG00000108189.5 +28587 chr17 HAVANA gene 8220642 8224043 2082.0 - 0 ENSG00000178977.3 lincRNA LINC00324 2 OTTHUMG00000132866.4 +28588 chr17 HAVANA gene 8224821 8248095 8566.0 - 0 ENSG00000178971.14 protein_coding CTC1 1 OTTHUMG00000178443.9 +28589 chr17 HAVANA gene 8247618 8270491 6471.0 + 0 ENSG00000178921.13 protein_coding PFAS 2 OTTHUMG00000108188.4 +28590 chr17 HAVANA gene 8277763 8278436 674.0 + 0 ENSG00000269947.1 lincRNA AC135178.5 2 OTTHUMG00000183996.1 +28591 chr17 HAVANA gene 8288497 8290092 1577.0 + 0 ENSG00000108961.13 protein_coding RANGRF 2 OTTHUMG00000178473.2 +28592 chr17 HAVANA gene 8287763 8295343 3897.0 - 0 ENSG00000125434.10 protein_coding SLC25A35 2 OTTHUMG00000178480.2 +28593 chr17 HAVANA gene 8296505 8297216 398.0 - 0 ENSG00000271029.1 processed_pseudogene AC135178.6 1 OTTHUMG00000184852.1 pseudo_consens +28594 chr17 HAVANA gene 8318088 8318712 537.0 - 0 ENSG00000226871.1 antisense AC135178.1 2 OTTHUMG00000132865.1 +28595 chr17 HAVANA gene 8310241 8322516 5294.0 + 0 ENSG00000198844.11 protein_coding ARHGEF15 2 OTTHUMG00000108187.6 +28596 chr17 ENSEMBL gene 8329583 8329719 137.0 + 0 ENSG00000212206.1 snoRNA RF00265 3 +28597 chr17 HAVANA gene 8337697 8338758 548.0 + 0 ENSG00000266279.1 lincRNA AC135178.4 2 OTTHUMG00000178519.1 +28598 chr17 HAVANA gene 8339864 8346048 1328.0 + 0 ENSG00000184650.10 protein_coding ODF4 1 OTTHUMG00000108190.3 +28599 chr17 HAVANA gene 8356902 8376711 3701.0 - 0 ENSG00000184619.5 protein_coding KRBA2 1 OTTHUMG00000132864.4 overlapping_locus +28600 chr17 HAVANA gene 8365563 8381328 1408.0 + 0 ENSG00000265749.5 antisense AC135178.3 2 OTTHUMG00000178521.1 +28601 chr17 HAVANA gene 8368638 8383187 3087.0 - 0 ENSG00000263809.1 protein_coding AC135178.2 2 OTTHUMG00000178564.1 overlapping_locus +28602 chr17 HAVANA gene 8377516 8383250 2513.0 - 0 ENSG00000161970.14 protein_coding RPL26 1 OTTHUMG00000108191.7 overlapping_locus +28603 chr17 HAVANA gene 8390704 8397826 3070.0 - 0 ENSG00000189051.5 protein_coding RNF222 2 OTTHUMG00000132049.2 +28604 chr17 HAVANA gene 8413131 8490411 7955.0 + 0 ENSG00000166579.15 protein_coding NDEL1 1 OTTHUMG00000108193.3 +28605 chr17 ENSEMBL gene 8511125 8511188 64.0 + 0 ENSG00000252363.1 snRNA RNU7-43P 3 +28606 chr17 HAVANA gene 8560471 8560962 492.0 + 0 ENSG00000270606.1 processed_pseudogene PPIAP52 1 OTTHUMG00000184909.1 pseudo_consens +28607 chr17 HAVANA gene 8561230 8561576 347.0 + 0 ENSG00000244604.1 processed_pseudogene AC025518.1 1 OTTHUMG00000157699.1 pseudo_consens +28608 chr17 HAVANA gene 8474205 8630761 9011.0 - 0 ENSG00000133026.12 protein_coding MYH10 2 OTTHUMG00000108195.4 +28609 chr17 HAVANA gene 8729934 8745219 1757.0 - 0 ENSG00000161973.10 protein_coding CCDC42 2 OTTHUMG00000178565.3 +28610 chr17 HAVANA gene 8753106 8758559 1063.0 - 0 ENSG00000183318.11 protein_coding SPDYE4 2 OTTHUMG00000178566.1 +28611 chr17 HAVANA gene 8797162 8799349 2188.0 - 0 ENSG00000185156.5 protein_coding MFSD6L 2 OTTHUMG00000178584.1 +28612 chr17 HAVANA gene 8802723 8867677 3564.0 - 0 ENSG00000276231.4 protein_coding PIK3R6 2 OTTHUMG00000132861.7 +28613 chr17 HAVANA gene 8878911 8965712 7506.0 - 0 ENSG00000141506.13 protein_coding PIK3R5 2 OTTHUMG00000108197.5 +28614 chr17 HAVANA gene 8965896 8967070 402.0 + 0 ENSG00000266389.1 lincRNA AC002091.2 2 OTTHUMG00000178278.1 +28615 chr17 HAVANA gene 8967523 8976995 557.0 + 0 ENSG00000265975.1 lincRNA AC002091.1 2 OTTHUMG00000178279.1 +28616 chr17 HAVANA gene 9171068 9179118 5672.0 - 0 ENSG00000262966.2 antisense AC005695.1 2 OTTHUMG00000177893.3 +28617 chr17 HAVANA gene 9021542 9244000 6383.0 + 0 ENSG00000065320.8 protein_coding NTN1 2 OTTHUMG00000130257.5 +28618 chr17 HAVANA gene 9244666 9244897 232.0 - 0 ENSG00000273816.1 lincRNA AC005695.3 2 OTTHUMG00000186625.1 +28619 chr17 HAVANA gene 9283174 9305651 259.0 + 0 ENSG00000263708.2 antisense AC005695.2 2 OTTHUMG00000179476.2 +28620 chr17 HAVANA gene 9464742 9467422 513.0 + 0 ENSG00000262815.1 antisense AC087501.2 2 OTTHUMG00000177984.1 overlapping_locus +28621 chr17 HAVANA gene 9452197 9470014 715.0 + 0 ENSG00000225751.2 antisense AC087501.1 2 OTTHUMG00000132850.2 overlapping_locus +28622 chr17 HAVANA gene 9547298 9548541 235.0 + 0 ENSG00000263051.1 antisense AC087501.3 2 OTTHUMG00000177985.1 +28623 chr17 HAVANA gene 9553323 9555696 2374.0 - 0 ENSG00000271851.1 sense_intronic AC087501.4 2 OTTHUMG00000177967.2 overlapping_locus +28624 chr17 HAVANA gene 9250471 9576591 3779.0 - 0 ENSG00000170310.14 protein_coding STX8 1 OTTHUMG00000177844.13 overlapping_locus +28625 chr17 HAVANA gene 9589902 9590482 581.0 - 0 ENSG00000241654.1 processed_pseudogene RPL19P18 1 OTTHUMG00000157702.1 pseudo_consens +28626 chr17 HAVANA gene 9576627 9643459 3078.0 + 0 ENSG00000166596.14 protein_coding CFAP52 1 OTTHUMG00000150149.9 +28627 chr17 HAVANA gene 9638768 9645325 212.0 - 0 ENSG00000265349.1 antisense AC118755.2 2 OTTHUMG00000178428.1 +28628 chr17 HAVANA gene 9647020 9647660 195.0 - 0 ENSG00000262296.1 antisense AC118755.1 2 OTTHUMG00000177943.1 +28629 chr17 HAVANA gene 9644698 9729691 5068.0 + 0 ENSG00000154914.16 protein_coding USP43 1 OTTHUMG00000177942.9 +28630 chr17 HAVANA gene 9771434 9791297 1006.0 - 0 ENSG00000184544.11 protein_coding DHRS7C 1 OTTHUMG00000177944.4 overlapping_locus +28631 chr17 HAVANA gene 9764188 9805073 1571.0 + 0 ENSG00000282882.1 lincRNA AC027045.2 2 OTTHUMG00000191571.1 +28632 chr17 HAVANA gene 9791227 9808855 202.0 - 0 ENSG00000278944.1 processed_transcript AC027045.1 2 OTTHUMG00000189306.1 overlapping_locus +28633 chr17 HAVANA gene 9805443 9811047 2884.0 + 0 ENSG00000283025.1 antisense AC027045.3 2 OTTHUMG00000191572.1 +28634 chr17 HAVANA gene 9802386 9822071 882.0 - 0 ENSG00000214978.7 protein_coding GSG1L2 1 OTTHUMG00000178429.6 overlapping_locus +28635 chr17 HAVANA gene 9852748 9853306 559.0 - 0 ENSG00000265593.1 processed_pseudogene NPM1P45 1 OTTHUMG00000178430.1 pseudo_consens +28636 chr17 HAVANA gene 9822206 9892102 6052.0 + 0 ENSG00000065325.12 protein_coding GLP2R 2 OTTHUMG00000130269.11 +28637 chr17 HAVANA gene 9896320 9905621 2921.0 - 0 ENSG00000109047.7 protein_coding RCVRN 2 OTTHUMG00000130268.4 +28638 chr17 HAVANA gene 9910609 10198551 10100.0 - 0 ENSG00000007237.18 protein_coding GAS7 2 OTTHUMG00000177945.15 +28639 chr17 HAVANA gene 10258762 10259232 471.0 + 0 ENSG00000242692.1 processed_pseudogene RPS27AP1 1 OTTHUMG00000157706.1 pseudo_consens +28640 chr17 HAVANA gene 10291820 10317926 523.0 + 0 ENSG00000273388.1 antisense AC005291.2 2 OTTHUMG00000185938.1 +28641 chr17 HAVANA gene 10320392 10341458 641.0 + 0 ENSG00000264067.1 antisense AC005291.1 2 OTTHUMG00000178465.1 +28642 chr17 HAVANA gene 10300865 10373130 6120.0 - 0 ENSG00000006788.13 protein_coding MYH13 2 OTTHUMG00000177987.5 +28643 chr17 HAVANA gene 10390322 10421950 6041.0 - 0 ENSG00000133020.4 protein_coding MYH8 2 OTTHUMG00000130361.2 +28644 chr17 HAVANA gene 10443290 10469559 6016.0 - 0 ENSG00000264424.1 protein_coding MYH4 2 OTTHUMG00000130365.2 +28645 chr17 HAVANA gene 10492307 10518543 6024.0 - 0 ENSG00000109061.9 protein_coding MYH1 2 OTTHUMG00000130362.2 +28646 chr17 HAVANA gene 10383132 10537862 769.0 + 0 ENSG00000272736.5 antisense AC005323.2 2 OTTHUMG00000186178.1 overlapping_locus +28647 chr17 HAVANA gene 10521148 10549957 6623.0 - 0 ENSG00000125414.18 protein_coding MYH2 1 OTTHUMG00000130363.58 +28648 chr17 HAVANA gene 10579040 10623036 1474.0 + 0 ENSG00000214970.8 antisense AC005323.1 2 OTTHUMG00000178041.6 overlapping_locus +28649 chr17 HAVANA gene 10383144 10623886 2274.0 + 0 ENSG00000272975.1 antisense MYHAS 2 OTTHUMG00000186260.4 overlapping_locus +28650 chr17 HAVANA gene 10628526 10657309 6684.0 - 0 ENSG00000109063.14 protein_coding MYH3 2 OTTHUMG00000130367.5 +28651 chr17 HAVANA gene 10658542 10659082 541.0 - 0 ENSG00000261433.1 lincRNA AC002347.1 2 OTTHUMG00000175966.1 +28652 chr17 HAVANA gene 10680734 10683988 171.0 + 0 ENSG00000263388.1 antisense AC002347.2 2 OTTHUMG00000178526.2 +28653 chr17 HAVANA gene 10672474 10698375 10230.0 - 0 ENSG00000133028.11 protein_coding SCO1 1 OTTHUMG00000130364.8 +28654 chr17 HAVANA gene 10697594 10711233 1620.0 + 0 ENSG00000170222.11 protein_coding ADPRM 2 OTTHUMG00000130366.6 +28655 chr17 HAVANA gene 10716002 10716511 510.0 - 0 ENSG00000264176.1 transcribed_processed_pseudogene MAGOH2P 1 OTTHUMG00000178044.2 pseudo_consens,overlapping_locus +28656 chr17 HAVANA gene 10699015 10730316 3508.0 - 0 ENSG00000187824.8 protein_coding TMEM220 1 OTTHUMG00000178043.4 overlapping_locus +28657 chr17 HAVANA gene 10745553 10746543 476.0 - 0 ENSG00000240813.2 processed_pseudogene AC015908.1 1 OTTHUMG00000157741.2 pseudo_consens,overlapping_locus +28658 chr17 HAVANA gene 10741267 10769016 941.0 - 0 ENSG00000264016.2 lincRNA AC015908.3 2 OTTHUMG00000178048.3 overlapping_locus +28659 chr17 HAVANA gene 10792059 10794985 575.0 + 0 ENSG00000266114.1 lincRNA AC015908.4 2 OTTHUMG00000178572.1 overlapping_locus +28660 chr17 HAVANA gene 10794913 10804099 1648.0 - 0 ENSG00000263429.3 protein_coding TMEM238L 1 OTTHUMG00000132847.7 overlapping_locus +28661 chr17 HAVANA gene 10729777 10815164 2102.0 + 0 ENSG00000263400.7 antisense TMEM220-AS1 2 OTTHUMG00000178046.5 overlapping_locus +28662 chr17 HAVANA gene 10821901 10822243 343.0 - 0 ENSG00000279542.1 TEC AC015908.5 2 OTTHUMG00000186014.1 +28663 chr17 HAVANA gene 10794906 10838094 1400.0 - 0 ENSG00000284876.1 processed_transcript AC015908.6 2 OTTHUMG00000192490.1 overlapping_locus +28664 chr17 HAVANA gene 10822475 10838445 3810.0 - 0 ENSG00000233670.6 protein_coding PIRT 2 OTTHUMG00000178234.2 overlapping_locus +28665 chr17 ENSEMBL gene 10857899 10858004 106.0 - 0 ENSG00000207242.1 snRNA RNU6-1065P 3 +28666 chr17 HAVANA gene 10860535 10861462 567.0 - 0 ENSG00000244753.2 processed_pseudogene RPL15P21 1 OTTHUMG00000157731.2 pseudo_consens +28667 chr17 HAVANA gene 10729777 10880895 1001.0 + 0 ENSG00000285220.1 processed_transcript AC015908.7 2 OTTHUMG00000192489.1 overlapping_locus +28668 chr17 HAVANA gene 10844674 10880895 1219.0 + 0 ENSG00000263508.6 lincRNA AC015908.2 2 OTTHUMG00000178198.4 overlapping_locus +28669 chr17 ENSEMBL gene 11157455 11157747 293.0 + 0 ENSG00000243346.3 misc_RNA RN7SL601P 3 +28670 chr17 HAVANA gene 11197883 11242062 1906.0 - 0 ENSG00000285541.1 antisense AC005548.1 2 OTTHUMG00000192783.1 +28671 chr17 HAVANA gene 11288205 11290811 2607.0 + 0 ENSG00000264727.1 lincRNA AC005725.1 2 OTTHUMG00000178265.1 overlapping_locus +28672 chr17 HAVANA gene 11241263 11564063 8527.0 + 0 ENSG00000188803.14 protein_coding SHISA6 2 OTTHUMG00000154121.6 overlapping_locus +28673 chr17 HAVANA gene 11874932 11875828 289.0 - 0 ENSG00000263684.1 antisense AC005209.1 2 OTTHUMG00000178313.1 +28674 chr17 HAVANA gene 11598431 11969748 16980.0 + 0 ENSG00000007174.17 protein_coding DNAH9 1 OTTHUMG00000130383.8 +28675 chr17 HAVANA gene 11953889 11977594 463.0 - 0 ENSG00000266368.1 antisense AC005410.2 2 OTTHUMG00000179652.1 overlapping_locus +28676 chr17 HAVANA gene 11977439 11997510 3012.0 - 0 ENSG00000154957.13 protein_coding ZNF18 1 OTTHUMG00000178307.5 overlapping_locus +28677 chr17 HAVANA gene 11998353 12021508 1000.0 - 0 ENSG00000241185.2 transcribed_processed_pseudogene AC005410.1 1 OTTHUMG00000157743.3 pseudo_consens +28678 chr17 ENSEMBL gene 12036496 12036637 142.0 - 0 ENSG00000252707.1 snRNA RNU11-2P 3 +28679 chr17 ENSEMBL gene 12081899 12081996 98.0 + 0 ENSG00000266297.1 miRNA MIR744 3 +28680 chr17 HAVANA gene 12115547 12115885 339.0 + 0 ENSG00000263648.1 processed_pseudogene AC005244.1 1 OTTHUMG00000178314.1 pseudo_consens,overlapping_locus +28681 chr17 HAVANA gene 12020824 12143830 5714.0 + 0 ENSG00000065559.14 protein_coding MAP2K4 1 OTTHUMG00000178267.7 ncRNA_host,overlapping_locus +28682 chr17 HAVANA gene 12201600 12215267 718.0 + 0 ENSG00000265400.1 lincRNA AC005244.2 2 OTTHUMG00000178315.1 +28683 chr17 HAVANA gene 12549782 12642854 3410.0 + 0 ENSG00000179136.6 lincRNA LINC00670 2 OTTHUMG00000058766.2 +28684 chr17 HAVANA gene 12671862 12706135 1143.0 - 0 ENSG00000227274.1 antisense AC005358.1 2 OTTHUMG00000058769.1 +28685 chr17 HAVANA gene 12665890 12768949 8875.0 + 0 ENSG00000141052.17 protein_coding MYOCD 2 OTTHUMG00000058767.6 +28686 chr17 HAVANA gene 12760140 12790242 3679.0 - 0 ENSG00000265489.1 antisense AC005358.2 2 OTTHUMG00000178329.1 +28687 chr17 ENSEMBL gene 12917268 12917342 75.0 - 0 ENSG00000265503.1 miRNA MIR1269B 3 +28688 chr17 HAVANA gene 12973033 12973834 802.0 - 0 ENSG00000280168.1 TEC AC005274.1 2 OTTHUMG00000178335.1 +28689 chr17 HAVANA gene 12982613 12983002 390.0 - 0 ENSG00000277621.1 antisense AC005277.2 2 OTTHUMG00000186626.1 +28690 chr17 HAVANA gene 12990149 12990610 335.0 - 0 ENSG00000263707.1 antisense AC005277.1 2 OTTHUMG00000179287.1 +28691 chr17 HAVANA gene 12789539 12991643 9281.0 + 0 ENSG00000006740.16 protein_coding ARHGAP44 1 OTTHUMG00000058765.5 +28692 chr17 HAVANA gene 12992391 13018187 6345.0 - 0 ENSG00000006744.18 protein_coding ELAC2 1 OTTHUMG00000058764.15 +28693 chr17 HAVANA gene 13095728 13100939 1105.0 + 0 ENSG00000273098.2 lincRNA AC005303.1 2 OTTHUMG00000185880.2 +28694 chr17 HAVANA gene 13299184 13306771 615.0 - 0 ENSG00000234634.2 lincRNA LINC02093 2 OTTHUMG00000058770.2 +28695 chr17 ENSEMBL gene 13543529 13543646 118.0 - 0 ENSG00000221698.1 miRNA MIR548H3 3 +28696 chr17 HAVANA gene 13495689 13601927 2628.0 - 0 ENSG00000153976.2 protein_coding HS3ST3A1 2 OTTHUMG00000058768.2 ncRNA_host +28697 chr17 HAVANA gene 13909231 13911212 1982.0 + 0 ENSG00000265494.1 lincRNA AC005304.2 2 OTTHUMG00000178474.1 +28698 chr17 HAVANA gene 13932720 13940594 405.0 - 0 ENSG00000233852.1 lincRNA AC005304.1 2 OTTHUMG00000058802.1 overlapping_locus +28699 chr17 HAVANA gene 13957748 13966952 511.0 - 0 ENSG00000266744.1 lincRNA AC005304.3 2 OTTHUMG00000178357.1 overlapping_locus +28700 chr17 HAVANA gene 14024514 14025488 564.0 + 0 ENSG00000141028.6 unprocessed_pseudogene CDRT15P1 2 OTTHUMG00000178372.2 +28701 chr17 HAVANA gene 13756478 14069495 6456.0 - 0 ENSG00000236088.9 processed_transcript COX10-AS1 2 OTTHUMG00000058771.6 overlapping_locus +28702 chr17 ENSEMBL gene 14177131 14177310 180.0 + 0 ENSG00000252305.1 snoRNA RF00090 3 +28703 chr17 HAVANA gene 14069496 14208677 3172.0 + 0 ENSG00000006695.10 protein_coding COX10 2 OTTHUMG00000058814.2 ncRNA_host +28704 chr17 HAVANA gene 14210488 14217922 1537.0 + 0 ENSG00000231595.1 lincRNA AC005224.1 2 OTTHUMG00000058809.1 +28705 chr17 HAVANA gene 14235673 14236862 779.0 - 0 ENSG00000223510.6 protein_coding CDRT15 1 OTTHUMG00000179686.1 +28706 chr17 HAVANA gene 14295512 14297600 1885.0 - 0 ENSG00000262786.1 lincRNA AC005224.2 2 OTTHUMG00000177837.1 +28707 chr17 HAVANA gene 14303854 14305505 1652.0 + 0 ENSG00000266709.1 lincRNA MGC12916 2 OTTHUMG00000178358.1 overlapping_locus +28708 chr17 HAVANA gene 14327335 14329474 2140.0 + 0 ENSG00000266378.1 lincRNA AC005224.3 2 OTTHUMG00000179687.1 overlapping_locus +28709 chr17 HAVANA gene 14301083 14349404 5367.0 + 0 ENSG00000125430.8 protein_coding HS3ST3B1 2 OTTHUMG00000058810.3 overlapping_locus +28710 chr17 HAVANA gene 14374139 14421026 804.0 + 0 ENSG00000230647.1 lincRNA AC022816.1 2 OTTHUMG00000058811.1 +28711 chr17 HAVANA gene 14705076 14705534 459.0 - 0 ENSG00000230897.1 processed_pseudogene RPS18P12 1 OTTHUMG00000058815.1 pseudo_consens +28712 chr17 HAVANA gene 14725729 14729686 232.0 + 0 ENSG00000226130.1 lincRNA AC013248.1 1 OTTHUMG00000058813.1 +28713 chr17 HAVANA gene 14767583 14780203 2998.0 - 0 ENSG00000205325.1 lincRNA AC005863.1 2 OTTHUMG00000058812.1 +28714 chr17 HAVANA gene 14834638 14900554 953.0 + 0 ENSG00000238212.2 lincRNA LINC02096 2 OTTHUMG00000058804.2 +28715 chr17 HAVANA gene 14947741 14948198 458.0 - 0 ENSG00000226156.1 processed_pseudogene RPL23AP76 1 OTTHUMG00000058805.2 pseudo_consens +28716 chr17 HAVANA gene 15030975 15031957 767.0 + 0 ENSG00000259944.1 lincRNA CDRT7 2 OTTHUMG00000058961.1 overlapping_locus +28717 chr17 HAVANA gene 15014805 15052276 976.0 + 0 ENSG00000232058.1 lincRNA AC005772.1 2 OTTHUMG00000059072.1 overlapping_locus +28718 chr17 HAVANA gene 15105237 15106187 467.0 - 0 ENSG00000265163.1 lincRNA CDRT8 2 OTTHUMG00000178871.1 +28719 chr17 ENSEMBL gene 15251627 15251696 70.0 - 0 ENSG00000265110.1 miRNA MIR4731 3 +28720 chr17 HAVANA gene 15260513 15261841 1329.0 + 0 ENSG00000279660.1 TEC AC005703.6 2 OTTHUMG00000178587.1 overlapping_locus +28721 chr17 HAVANA gene 15229777 15265357 3222.0 - 0 ENSG00000109099.14 protein_coding PMP22 1 OTTHUMG00000058960.6 ncRNA_host +28722 chr17 HAVANA gene 15261015 15265707 373.0 + 0 ENSG00000265445.1 antisense AC005703.3 2 OTTHUMG00000178498.1 overlapping_locus +28723 chr17 HAVANA gene 15267461 15272290 1773.0 - 0 ENSG00000230971.1 lincRNA AC005703.1 2 OTTHUMG00000058962.1 +28724 chr17 HAVANA gene 15276562 15279477 343.0 - 0 ENSG00000237377.2 lincRNA AC005703.2 2 OTTHUMG00000058964.2 +28725 chr17 ENSEMBL gene 15311345 15311451 107.0 + 0 ENSG00000200437.1 snRNA RNU6-799P 3 +28726 chr17 HAVANA gene 15303811 15341641 2609.0 - 0 ENSG00000125409.12 protein_coding TEKT3 1 OTTHUMG00000058965.8 +28727 chr17 HAVANA gene 15365323 15365877 555.0 + 0 ENSG00000279567.1 TEC AC005703.5 2 OTTHUMG00000178588.1 +28728 chr17 ENSEMBL gene 15408384 15408688 305.0 + 0 ENSG00000239888.3 misc_RNA RN7SL792P 3 +28729 chr17 HAVANA gene 15379864 15417878 538.0 - 0 ENSG00000266667.1 lincRNA AC005703.4 2 OTTHUMG00000178589.1 +28730 chr17 HAVANA gene 15443639 15444191 553.0 + 0 ENSG00000234324.1 processed_pseudogene RPL9P2 1 OTTHUMG00000059068.1 pseudo_consens +28731 chr17 HAVANA gene 15436015 15503608 3245.0 - 0 ENSG00000239704.10 protein_coding CDRT4 2 OTTHUMG00000059070.13 overlapping_locus +28732 chr17 HAVANA gene 15506866 15507354 489.0 + 0 ENSG00000223878.1 processed_pseudogene PPIAP53 1 OTTHUMG00000059069.1 pseudo_consens +28733 chr17 HAVANA gene 15530773 15531089 317.0 - 0 ENSG00000266538.1 lincRNA AC005838.2 2 OTTHUMG00000178873.1 overlapping_locus +28734 chr17 HAVANA gene 15436021 15563561 3097.0 - 0 ENSG00000259024.6 protein_coding TVP23C-CDRT4 2 OTTHUMG00000165004.4 overlapping_locus +28735 chr17 HAVANA gene 15502264 15563595 5435.0 - 0 ENSG00000175106.16 protein_coding TVP23C 1 OTTHUMG00000171461.10 overlapping_locus +28736 chr17 ENSEMBL gene 15574019 15574198 180.0 + 0 ENSG00000252129.1 snoRNA RF00090 3 +28737 chr17 HAVANA gene 15588852 15589084 233.0 + 0 ENSG00000223544.1 unprocessed_pseudogene AC005838.1 2 OTTHUMG00000059075.2 +28738 chr17 HAVANA gene 15565483 15619512 4286.0 - 0 ENSG00000241322.10 protein_coding CDRT1 1 OTTHUMG00000059074.8 overlapping_locus +28739 chr17 HAVANA gene 15571491 15651653 5514.0 - 0 ENSG00000251537.4 protein_coding AC005324.3 2 OTTHUMG00000160985.3 overlapping_locus +28740 chr17 HAVANA gene 15651590 15654489 571.0 + 0 ENSG00000266261.1 antisense AC005324.5 2 OTTHUMG00000179072.1 +28741 chr17 HAVANA gene 15675476 15675643 168.0 + 0 ENSG00000108452.1 unprocessed_pseudogene ZNF29P 2 OTTHUMG00000059142.2 +28742 chr17 HAVANA gene 15627960 15684311 5640.0 - 0 ENSG00000221926.12 protein_coding TRIM16 1 OTTHUMG00000059067.8 overlapping_locus +28743 chr17 HAVANA gene 15704232 15704900 669.0 - 0 ENSG00000233966.1 processed_pseudogene UBE2SP1 2 OTTHUMG00000059073.1 +28744 chr17 HAVANA gene 15699577 15720787 6754.0 + 0 ENSG00000187607.15 protein_coding ZNF286A 2 OTTHUMG00000166448.14 overlapping_locus +28745 chr17 HAVANA gene 15699692 15744778 4387.0 + 0 ENSG00000255104.8 protein_coding AC005324.4 2 OTTHUMG00000059066.14 overlapping_locus +28746 chr17 HAVANA gene 15732247 15749192 5699.0 + 0 ENSG00000214946.14 protein_coding TBC1D26 2 OTTHUMG00000059071.6 overlapping_locus +28747 chr17 HAVANA gene 15735023 15749192 1582.0 - 0 ENSG00000233002.2 antisense AC005324.1 2 OTTHUMG00000059148.2 overlapping_locus +28748 chr17 HAVANA gene 15748703 15749315 613.0 - 0 ENSG00000267227.1 processed_pseudogene AC005324.6 2 OTTHUMG00000179850.1 overlapping_locus +28749 chr17 HAVANA gene 15761614 15763769 415.0 - 0 ENSG00000233193.1 lincRNA AC005324.2 2 OTTHUMG00000059149.1 +28750 chr17 HAVANA gene 15764703 15765664 416.0 + 0 ENSG00000227255.1 unprocessed_pseudogene CDRT15P2 2 OTTHUMG00000059141.2 +28751 chr17 HAVANA gene 15768717 15771426 1970.0 - 0 ENSG00000235430.1 processed_pseudogene ZSWIM5P1 1 OTTHUMG00000059143.1 pseudo_consens +28752 chr17 ENSEMBL gene 15782341 15782455 115.0 + 0 ENSG00000251829.1 rRNA_pseudogene RNA5SP436 3 +28753 chr17 HAVANA gene 15783288 15784307 1020.0 + 0 ENSG00000227018.1 processed_pseudogene IL6STP1 1 OTTHUMG00000059144.1 pseudo_consens +28754 chr17 HAVANA gene 15786618 15787575 958.0 + 0 ENSG00000179277.9 processed_pseudogene MEIS3P1 1 OTTHUMG00000059145.3 pseudo_consens +28755 chr17 HAVANA gene 15787787 15788205 347.0 - 0 ENSG00000265519.1 lincRNA AC015922.2 2 OTTHUMG00000179073.1 +28756 chr17 HAVANA gene 15789016 15789705 690.0 + 0 ENSG00000276855.1 lincRNA AC015922.3 2 OTTHUMG00000186632.1 +28757 chr17 HAVANA gene 15792862 15793045 184.0 + 0 ENSG00000233090.1 unprocessed_pseudogene AC015922.1 2 OTTHUMG00000130863.1 +28758 chr17 HAVANA gene 15806241 15817742 951.0 - 0 ENSG00000237057.2 lincRNA LINC02087 2 OTTHUMG00000059147.2 +28759 chr17 HAVANA gene 15829369 15908632 1446.0 + 0 ENSG00000227790.7 transcribed_unprocessed_pseudogene SPECC1P1 2 OTTHUMG00000059146.3 +28760 chr17 HAVANA gene 15944917 15975746 2551.0 + 0 ENSG00000170425.3 protein_coding ADORA2B 2 OTTHUMG00000059140.2 +28761 chr17 HAVANA gene 15976560 15999717 2559.0 - 0 ENSG00000214941.7 protein_coding ZSWIM7 1 OTTHUMG00000059308.5 +28762 chr17 HAVANA gene 16023323 16023653 331.0 - 0 ENSG00000275413.1 antisense AC002553.2 2 OTTHUMG00000186633.1 +28763 chr17 HAVANA gene 16040472 16041273 802.0 + 0 ENSG00000227782.2 antisense AC002553.1 2 OTTHUMG00000187025.1 overlapping_locus +28764 chr17 HAVANA gene 16044621 16044961 341.0 + 0 ENSG00000243686.2 processed_pseudogene RPLP1P11 2 OTTHUMG00000059307.2 overlapping_locus +28765 chr17 HAVANA gene 15999380 16045015 5966.0 + 0 ENSG00000011295.15 protein_coding TTC19 1 OTTHUMG00000059306.10 overlapping_locus +28766 chr17 HAVANA gene 16084042 16084381 340.0 + 0 ENSG00000233979.1 processed_pseudogene RPL22P21 1 OTTHUMG00000059344.2 pseudo_consens +28767 chr17 ENSEMBL gene 16098704 16098807 104.0 + 0 ENSG00000252383.1 snRNA RNU6-314P 3 +28768 chr17 ENSEMBL gene 16137768 16137872 105.0 - 0 ENSG00000199674.1 snRNA RNU6-862P 3 +28769 chr17 ENSEMBL gene 16191832 16192151 320.0 + 0 ENSG00000239221.3 misc_RNA RN7SL442P 3 +28770 chr17 HAVANA gene 16029157 16218185 15404.0 - 0 ENSG00000141027.20 protein_coding NCOR1 1 OTTHUMG00000059309.11 ncRNA_host +28771 chr17 ENSEMBL gene 16282014 16282088 75.0 + 0 ENSG00000221355.1 miRNA MIR1288 3 +28772 chr17 HAVANA gene 16217191 16351797 6162.0 + 0 ENSG00000108474.16 protein_coding PIGL 1 OTTHUMG00000059346.10 ncRNA_host +28773 chr17 HAVANA gene 16342534 16353656 2880.0 - 0 ENSG00000166582.9 protein_coding CENPV 2 OTTHUMG00000059345.4 +28774 chr17 HAVANA gene 16382152 16382669 461.0 - 0 ENSG00000265401.1 antisense AC093484.3 2 OTTHUMG00000179350.1 +28775 chr17 HAVANA gene 16380798 16382745 1621.0 + 0 ENSG00000170315.13 protein_coding UBB 1 OTTHUMG00000058987.6 +28776 chr17 HAVANA gene 16391434 16391882 449.0 + 0 ENSG00000265095.1 processed_pseudogene FTLP12 1 OTTHUMG00000179839.1 pseudo_consens +28777 chr17 HAVANA gene 16414524 16416689 2166.0 - 0 ENSG00000264739.1 antisense AC093484.2 2 OTTHUMG00000179142.1 +28778 chr17 HAVANA gene 16427474 16428719 477.0 + 0 ENSG00000239203.1 processed_transcript AC093484.1 2 OTTHUMG00000058991.1 overlapping_locus +28779 chr17 HAVANA gene 16415542 16437003 3410.0 + 0 ENSG00000187688.14 protein_coding TRPV2 1 OTTHUMG00000058989.8 overlapping_locus +28780 chr17 ENSEMBL gene 16439505 16439576 72.0 + 0 ENSG00000277108.1 snoRNA SNORD49B 3 +28781 chr17 ENSEMBL gene 16440036 16440106 71.0 + 0 ENSG00000277370.1 snoRNA SNORD49A 3 +28782 chr17 HAVANA gene 16440479 16440952 304.0 - 0 ENSG00000266651.1 lincRNA AC093484.4 2 OTTHUMG00000179325.1 +28783 chr17 ENSEMBL gene 16441226 16441298 73.0 + 0 ENSG00000277512.1 snoRNA SNORD65 3 +28784 chr17 HAVANA gene 16438822 16478678 3759.0 + 0 ENSG00000175061.17 processed_transcript LRRC75A-AS1 2 OTTHUMG00000058990.5 ncRNA_host +28785 chr17 HAVANA gene 16441577 16492153 3695.0 - 0 ENSG00000181350.11 protein_coding LRRC75A 1 OTTHUMG00000058988.3 +28786 chr17 HAVANA gene 16557985 16559269 689.0 - 0 ENSG00000266803.1 sense_intronic AC127540.1 2 OTTHUMG00000179359.1 overlapping_locus +28787 chr17 HAVANA gene 16551387 16569206 3566.0 - 0 ENSG00000141040.14 protein_coding ZNF287 1 OTTHUMG00000058993.5 overlapping_locus +28788 chr17 HAVANA gene 16616848 16617881 1034.0 - 0 ENSG00000235554.1 processed_pseudogene AC005822.1 1 OTTHUMG00000058997.1 pseudo_consens +28789 chr17 HAVANA gene 16620737 16653856 5090.0 - 0 ENSG00000197566.9 protein_coding ZNF624 2 OTTHUMG00000058996.5 +28790 chr17 HAVANA gene 16653904 16654787 771.0 + 0 ENSG00000264765.1 lincRNA AC098850.2 2 OTTHUMG00000178960.1 +28791 chr17 HAVANA gene 16666107 16667118 1012.0 - 0 ENSG00000264359.1 processed_pseudogene NEK4P2 1 OTTHUMG00000178961.1 pseudo_consens +28792 chr17 HAVANA gene 16683438 16684227 790.0 + 0 ENSG00000231458.2 processed_pseudogene RNASEH1P2 1 OTTHUMG00000059176.2 pseudo_consens +28793 chr17 ENSEMBL gene 16691798 16691907 110.0 + 0 ENSG00000252446.1 snRNA RNU6-405P 3 +28794 chr17 ENSEMBL gene 16710059 16710361 303.0 + 0 ENSG00000276088.1 misc_RNA RN7SL620P 3 +28795 chr17 HAVANA gene 16745636 16746761 1126.0 - 0 ENSG00000226478.3 processed_pseudogene UPF3AP1 1 OTTHUMG00000059169.1 pseudo_consens +28796 chr17 HAVANA gene 16689537 16777881 15568.0 + 0 ENSG00000170160.17 protein_coding CCDC144A 2 OTTHUMG00000059178.7 ncRNA_host,overlapping_locus +28797 chr17 HAVANA gene 16787235 16788141 269.0 - 0 ENSG00000266129.1 processed_pseudogene SRP68P1 2 OTTHUMG00000178995.1 +28798 chr17 HAVANA gene 16788248 16789234 686.0 - 0 ENSG00000264673.1 antisense AC098850.1 2 OTTHUMG00000178962.1 +28799 chr17 HAVANA gene 16690261 16804453 8802.0 + 0 ENSG00000266302.6 protein_coding AC098850.3 2 OTTHUMG00000179236.1 ncRNA_host,overlapping_locus +28800 chr17 HAVANA gene 16786489 16804455 7676.0 + 0 ENSG00000188933.15 transcribed_unprocessed_pseudogene USP32P1 2 OTTHUMG00000186451.2 overlapping_locus +28801 chr17 HAVANA gene 16804627 16805707 302.0 + 0 ENSG00000264729.1 lincRNA AC022596.1 2 OTTHUMG00000179237.1 overlapping_locus +28802 chr17 HAVANA gene 16812447 16812651 205.0 + 0 ENSG00000264892.1 processed_pseudogene NOS2P4 2 OTTHUMG00000179841.1 overlapping_locus +28803 chr17 HAVANA gene 16788057 16816540 3243.0 + 0 ENSG00000272815.1 processed_transcript AC098850.4 2 OTTHUMG00000059170.3 overlapping_locus +28804 chr17 HAVANA gene 16817983 16822579 1906.0 - 0 ENSG00000226145.7 transcribed_unprocessed_pseudogene KRT16P6 2 OTTHUMG00000059171.4 +28805 chr17 HAVANA gene 16829999 16832830 1500.0 - 0 ENSG00000227300.12 transcribed_unprocessed_pseudogene KRT16P2 2 OTTHUMG00000059177.5 +28806 chr17 HAVANA gene 16840895 16845881 2183.0 - 0 ENSG00000131885.17 transcribed_unprocessed_pseudogene KRT17P1 2 OTTHUMG00000059175.3 +28807 chr17 HAVANA gene 16847635 16852777 2964.0 - 0 ENSG00000205312.8 transcribed_unprocessed_pseudogene KRT17P4 1 OTTHUMG00000059174.2 +28808 chr17 HAVANA gene 16853935 16854309 375.0 + 0 ENSG00000229749.1 processed_pseudogene COTL1P1 1 OTTHUMG00000059172.1 pseudo_consens +28809 chr17 HAVANA gene 16861146 16864223 3078.0 + 0 ENSG00000283033.1 lincRNA AC022596.2 2 OTTHUMG00000191485.1 +28810 chr17 HAVANA gene 16893198 16893429 232.0 - 0 ENSG00000265853.1 processed_pseudogene AL353996.1 2 OTTHUMG00000179163.1 +28811 chr17 HAVANA gene 16922915 16934839 5250.0 - 0 ENSG00000128438.10 transcribed_unprocessed_pseudogene TBC1D27P 2 OTTHUMG00000059260.4 overlapping_locus +28812 chr17 HAVANA gene 16929816 16972118 3550.0 - 0 ENSG00000240505.8 protein_coding TNFRSF13B 1 OTTHUMG00000059262.6 overlapping_locus +28813 chr17 HAVANA gene 16975999 16981353 2201.0 - 0 ENSG00000230709.1 lincRNA AC104024.1 2 OTTHUMG00000059261.1 +28814 chr17 HAVANA gene 16988329 16990177 400.0 + 0 ENSG00000230969.2 lincRNA LINC02090 2 OTTHUMG00000059263.2 +28815 chr17 HAVANA gene 17011914 17014990 3077.0 - 0 ENSG00000260328.1 lincRNA AC104024.2 2 OTTHUMG00000175970.1 +28816 chr17 HAVANA gene 17076038 17077752 1058.0 - 0 ENSG00000225442.2 antisense MPRIP-AS1 2 OTTHUMG00000059279.2 +28817 chr17 ENSEMBL gene 17170083 17170189 107.0 + 0 ENSG00000206859.1 snRNA RNU6-767P 3 +28818 chr17 ENSEMBL gene 17178414 17178749 336.0 + 0 ENSG00000243370.3 misc_RNA RN7SL775P 3 +28819 chr17 HAVANA gene 17181504 17183257 1754.0 + 0 ENSG00000278864.1 TEC AC055811.4 2 OTTHUMG00000179184.1 overlapping_locus +28820 chr17 HAVANA gene 17167946 17185554 1231.0 - 0 ENSG00000263624.1 antisense AC055811.1 2 OTTHUMG00000179183.1 +28821 chr17 HAVANA gene 17200995 17206315 2560.0 - 0 ENSG00000179598.5 protein_coding PLD6 2 OTTHUMG00000059278.2 overlapping_locus +28822 chr17 HAVANA gene 17042545 17217679 18153.0 + 0 ENSG00000133030.20 protein_coding MPRIP 1 OTTHUMG00000059276.10 ncRNA_host,overlapping_locus +28823 chr17 HAVANA gene 17235433 17236118 686.0 - 0 ENSG00000266498.1 lincRNA AC055811.3 2 OTTHUMG00000179384.1 overlapping_locus +28824 chr17 HAVANA gene 17202649 17237185 1693.0 - 0 ENSG00000264187.1 protein_coding AC055811.2 2 OTTHUMG00000179185.1 overlapping_locus +28825 chr17 HAVANA gene 17212212 17237188 9786.0 - 0 ENSG00000154803.12 protein_coding FLCN 2 OTTHUMG00000059275.5 overlapping_locus +28826 chr17 HAVANA gene 17242010 17242886 877.0 + 0 ENSG00000226359.1 processed_pseudogene ACTG1P24 1 OTTHUMG00000059280.1 pseudo_consens +28827 chr17 HAVANA gene 17246820 17281293 2788.0 - 0 ENSG00000141030.12 protein_coding COPS3 1 OTTHUMG00000059281.6 +28828 chr17 HAVANA gene 17303335 17347663 1961.0 + 0 ENSG00000205309.13 protein_coding NT5M 2 OTTHUMG00000059277.3 +28829 chr17 HAVANA gene 17383377 17384012 636.0 - 0 ENSG00000215030.5 processed_pseudogene RPL13P12 2 OTTHUMG00000059294.2 +28830 chr17 HAVANA gene 17422681 17423704 1024.0 + 0 ENSG00000227158.1 processed_pseudogene AC073621.1 1 OTTHUMG00000059295.1 pseudo_consens +28831 chr17 HAVANA gene 17456427 17457259 515.0 + 0 ENSG00000230865.1 processed_pseudogene TSEN15P1 1 OTTHUMG00000059289.1 pseudo_consens +28832 chr17 ENSEMBL gene 17460444 17460522 79.0 + 0 ENSG00000201741.1 misc_RNA RF00019 3 +28833 chr17 HAVANA gene 17476986 17493226 5998.0 + 0 ENSG00000141026.5 protein_coding MED9 2 OTTHUMG00000059293.2 +28834 chr17 HAVANA gene 17494437 17496395 1748.0 - 0 ENSG00000108551.4 protein_coding RASD1 1 OTTHUMG00000059292.3 +28835 chr17 HAVANA gene 17507351 17508308 795.0 + 0 ENSG00000265511.1 antisense AC020558.2 2 OTTHUMG00000178674.1 +28836 chr17 ENSEMBL gene 17578631 17578739 109.0 + 0 ENSG00000206730.1 snRNA RNU6-468P 3 +28837 chr17 HAVANA gene 17505563 17591708 1720.0 - 0 ENSG00000133027.17 protein_coding PEMT 2 OTTHUMG00000059290.5 +28838 chr17 HAVANA gene 17591428 17610485 425.0 + 0 ENSG00000264666.1 antisense AC020558.1 2 OTTHUMG00000179385.1 +28839 chr17 HAVANA gene 17616043 17617745 1703.0 + 0 ENSG00000279200.1 TEC AC020558.3 2 OTTHUMG00000179600.1 +28840 chr17 ENSEMBL gene 17675366 17675522 157.0 + 0 ENSG00000273948.1 misc_RNA RF02177 3 +28841 chr17 ENSEMBL gene 17676211 17676371 161.0 + 0 ENSG00000274836.1 misc_RNA RF02178 3 +28842 chr17 HAVANA gene 17674026 17677688 564.0 - 0 ENSG00000223979.2 lincRNA SMCR2 2 OTTHUMG00000059291.2 +28843 chr17 HAVANA gene 17759154 17770821 724.0 - 0 ENSG00000237328.1 antisense RAI1-AS1 2 OTTHUMG00000059315.2 +28844 chr17 HAVANA gene 17777781 17779094 466.0 + 0 ENSG00000264167.1 sense_intronic AC122129.2 2 OTTHUMG00000178675.1 overlapping_locus +28845 chr17 HAVANA gene 17776686 17779529 2844.0 - 0 ENSG00000226746.2 antisense SMCR5 2 OTTHUMG00000178769.1 +28846 chr17 HAVANA gene 17681473 17811453 9693.0 + 0 ENSG00000108557.18 protein_coding RAI1 2 OTTHUMG00000059314.3 overlapping_locus +28847 chr17 ENSEMBL gene 17813480 17813545 66.0 - 0 ENSG00000274111.1 miRNA MIR6777 3 +28848 chr17 ENSEMBL gene 17813836 17813931 96.0 - 0 ENSG00000207839.1 miRNA MIR33B 3 +28849 chr17 HAVANA gene 17810399 17837002 8030.0 - 0 ENSG00000072310.16 protein_coding SREBF1 2 OTTHUMG00000059313.8 ncRNA_host +28850 chr17 HAVANA gene 17858227 17860041 1815.0 + 0 ENSG00000197815.4 antisense AC122129.1 2 OTTHUMG00000186877.1 +28851 chr17 HAVANA gene 17843511 17972422 7863.0 - 0 ENSG00000175662.17 protein_coding TOM1L2 1 OTTHUMG00000059353.7 +28852 chr17 HAVANA gene 17981192 17981572 381.0 - 0 ENSG00000230273.1 processed_pseudogene AC087163.1 1 OTTHUMG00000059357.1 pseudo_consens,overlapping_locus +28853 chr17 HAVANA gene 18010643 18011822 853.0 + 0 ENSG00000232344.2 processed_pseudogene AC087163.2 1 OTTHUMG00000059356.2 pseudo_consens,overlapping_locus +28854 chr17 HAVANA gene 17972813 18016889 7332.0 + 0 ENSG00000171962.17 protein_coding DRC3 1 OTTHUMG00000059355.8 overlapping_locus +28855 chr17 HAVANA gene 18026072 18026771 700.0 - 0 ENSG00000280198.1 TEC AC087163.3 2 OTTHUMG00000178828.1 overlapping_locus +28856 chr17 HAVANA gene 17977409 18039209 5564.0 - 0 ENSG00000171953.15 protein_coding ATPAF2 2 OTTHUMG00000059354.9 overlapping_locus +28857 chr17 HAVANA gene 18039292 18068404 5210.0 + 0 ENSG00000141034.9 protein_coding GID4 2 OTTHUMG00000059398.4 +28858 chr17 HAVANA gene 18087886 18107971 7411.0 + 0 ENSG00000108591.9 protein_coding DRG2 1 OTTHUMG00000059399.7 +28859 chr17 HAVANA gene 18107334 18110463 3130.0 - 0 ENSG00000279428.1 TEC AC087164.2 2 OTTHUMG00000180330.1 +28860 chr17 HAVANA gene 18108706 18179806 20002.0 + 0 ENSG00000091536.17 protein_coding MYO15A 1 OTTHUMG00000059390.11 +28861 chr17 HAVANA gene 18172625 18184753 2279.0 - 0 ENSG00000266677.1 antisense AC087164.1 2 OTTHUMG00000179407.1 +28862 chr17 HAVANA gene 18183078 18209954 3190.0 + 0 ENSG00000091542.8 protein_coding ALKBH5 1 OTTHUMG00000059397.5 +28863 chr17 HAVANA gene 18225587 18244875 6638.0 + 0 ENSG00000131899.10 protein_coding LLGL1 2 OTTHUMG00000059396.3 +28864 chr17 HAVANA gene 18244836 18258916 6465.0 - 0 ENSG00000177731.15 protein_coding FLII 2 OTTHUMG00000059389.10 +28865 chr17 HAVANA gene 18260534 18266552 3969.0 + 0 ENSG00000177427.12 protein_coding MIEF2 1 OTTHUMG00000059392.4 +28866 chr17 HAVANA gene 18268080 18268828 749.0 + 0 ENSG00000260647.1 antisense AC127537.1 2 OTTHUMG00000175974.1 +28867 chr17 HAVANA gene 18311904 18312651 748.0 + 0 ENSG00000228000.1 processed_pseudogene RPL7AP65 1 OTTHUMG00000059393.1 pseudo_consens +28868 chr17 HAVANA gene 18312760 18313533 465.0 + 0 ENSG00000237382.2 processed_pseudogene RPL21P121 1 OTTHUMG00000059395.2 pseudo_consens +28869 chr17 HAVANA gene 18271428 18315007 6476.0 - 0 ENSG00000177302.14 protein_coding TOP3A 2 OTTHUMG00000059391.7 +28870 chr17 HAVANA gene 18315310 18328055 8279.0 + 0 ENSG00000176994.10 protein_coding SMCR8 2 OTTHUMG00000059394.4 +28871 chr17 ENSEMBL gene 18340814 18340886 73.0 - 0 ENSG00000283772.1 miRNA MIR6778 3 +28872 chr17 HAVANA gene 18327860 18363563 7281.0 - 0 ENSG00000176974.19 protein_coding SHMT1 2 OTTHUMG00000059094.6 ncRNA_host +28873 chr17 HAVANA gene 18379855 18388984 4955.0 - 0 ENSG00000264177.1 antisense AL353997.2 2 OTTHUMG00000179473.1 +28874 chr17 HAVANA gene 18388871 18389459 589.0 + 0 ENSG00000267441.1 processed_pseudogene AL353997.3 2 OTTHUMG00000179891.1 overlapping_locus +28875 chr17 HAVANA gene 18377662 18389647 2156.0 + 0 ENSG00000214860.4 protein_coding EVPLL 1 OTTHUMG00000059095.2 overlapping_locus +28876 chr17 HAVANA gene 18390153 18390323 171.0 - 0 ENSG00000275206.1 unprocessed_pseudogene AL353997.5 2 OTTHUMG00000187939.1 +28877 chr17 HAVANA gene 18393480 18400961 1075.0 + 0 ENSG00000204471.3 unprocessed_pseudogene TBC1D3P4 2 OTTHUMG00000059093.1 +28878 chr17 HAVANA gene 18411159 18414380 1871.0 + 0 ENSG00000220161.4 lincRNA LINC02076 2 OTTHUMG00000179643.1 +28879 chr17 HAVANA gene 18418195 18418306 112.0 - 0 ENSG00000266162.1 processed_pseudogene YWHAEP2 2 OTTHUMG00000179532.1 +28880 chr17 HAVANA gene 18415728 18425097 3157.0 + 0 ENSG00000205266.10 transcribed_unprocessed_pseudogene KRT17P5 2 OTTHUMG00000059247.2 +28881 chr17 HAVANA gene 18426861 18431848 2145.0 + 0 ENSG00000186831.11 transcribed_unprocessed_pseudogene KRT17P2 2 OTTHUMG00000059248.2 +28882 chr17 HAVANA gene 18432051 18442895 2373.0 + 0 ENSG00000214856.11 transcribed_unprocessed_pseudogene KRT16P1 2 OTTHUMG00000059249.2 +28883 chr17 HAVANA gene 18452955 18453062 108.0 + 0 ENSG00000227919.1 unprocessed_pseudogene AL353997.1 2 OTTHUMG00000130869.1 overlapping_locus +28884 chr17 HAVANA gene 18453574 18453739 166.0 - 0 ENSG00000267492.1 processed_pseudogene AL353997.4 2 OTTHUMG00000179897.1 +28885 chr17 HAVANA gene 18460391 18463055 2665.0 + 0 ENSG00000230662.1 processed_pseudogene TNPO1P2 1 OTTHUMG00000059250.1 pseudo_consens,overlapping_locus +28886 chr17 HAVANA gene 18450244 18475920 755.0 + 0 ENSG00000229526.2 transcribed_processed_pseudogene KRT16P4 2 OTTHUMG00000130551.1 overlapping_locus +28887 chr17 HAVANA gene 18476737 18494945 4754.0 + 0 ENSG00000171916.16 protein_coding LGALS9C 2 OTTHUMG00000059251.6 +28888 chr17 HAVANA gene 18497095 18506313 1974.0 - 0 ENSG00000167494.9 transcribed_unprocessed_pseudogene NOS2P2 2 OTTHUMG00000059253.6 +28889 chr17 HAVANA gene 18511262 18525930 6442.0 - 0 ENSG00000233327.10 transcribed_unprocessed_pseudogene USP32P2 1 OTTHUMG00000186369.15 overlapping_locus +28890 chr17 HAVANA gene 18527557 18528461 254.0 + 0 ENSG00000227689.1 processed_pseudogene SRP68P2 2 OTTHUMG00000059407.1 +28891 chr17 HAVANA gene 18511221 18551705 7703.0 - 0 ENSG00000273018.6 processed_transcript FAM106A 2 OTTHUMG00000059367.18 overlapping_locus +28892 chr17 HAVANA gene 18572752 18572961 210.0 + 0 ENSG00000227077.3 processed_pseudogene AC107983.1 2 OTTHUMG00000059369.1 +28893 chr17 ENSEMBL gene 18605054 18605356 303.0 - 0 ENSG00000276532.1 misc_RNA RF00017 3 +28894 chr17 HAVANA gene 18537800 18625617 9900.0 - 0 ENSG00000154874.15 transcribed_unprocessed_pseudogene CCDC144B 2 OTTHUMG00000059531.6 overlapping_locus +28895 chr17 HAVANA gene 18638019 18638370 352.0 - 0 ENSG00000262262.1 transcribed_processed_pseudogene AC026271.2 2 OTTHUMG00000178223.1 overlapping_locus +28896 chr17 HAVANA gene 18650195 18651542 1348.0 + 0 ENSG00000174977.8 processed_pseudogene AC026271.1 1 OTTHUMG00000059049.1 pseudo_consens +28897 chr17 HAVANA gene 18635006 18661950 3747.0 - 0 ENSG00000189375.10 protein_coding TBC1D28 2 OTTHUMG00000059054.5 overlapping_locus +28898 chr17 HAVANA gene 18667629 18669461 1833.0 - 0 ENSG00000264885.1 sense_intronic AC026271.3 2 OTTHUMG00000179787.1 overlapping_locus +28899 chr17 HAVANA gene 18670946 18672873 1928.0 - 0 ENSG00000240445.3 processed_pseudogene FOXO3B 1 OTTHUMG00000059047.3 pseudo_consens,overlapping_locus +28900 chr17 HAVANA gene 18677261 18677757 497.0 + 0 ENSG00000224126.2 processed_pseudogene UBE2SP2 1 OTTHUMG00000059055.2 pseudo_consens +28901 chr17 HAVANA gene 18658429 18682262 5884.0 - 0 ENSG00000249459.8 protein_coding ZNF286B 2 OTTHUMG00000178136.6 overlapping_locus +28902 chr17 HAVANA gene 18704640 18704769 130.0 + 0 ENSG00000265693.1 transcribed_processed_pseudogene AC026271.4 2 OTTHUMG00000179788.1 overlapping_locus +28903 chr17 HAVANA gene 18697998 18736118 4329.0 + 0 ENSG00000108448.21 protein_coding TRIM16L 2 OTTHUMG00000059050.11 overlapping_locus +28904 chr17 HAVANA gene 18744024 18779349 4390.0 + 0 ENSG00000171931.12 protein_coding FBXW10 2 OTTHUMG00000059048.4 +28905 chr17 HAVANA gene 18780995 18806714 5862.0 + 0 ENSG00000171928.13 protein_coding TVP23B 2 OTTHUMG00000059052.6 +28906 chr17 HAVANA gene 18809956 18810940 985.0 + 0 ENSG00000265478.2 lincRNA AC107982.3 2 OTTHUMG00000186634.1 +28907 chr17 ENSEMBL gene 18840618 18840920 303.0 + 0 ENSG00000274747.1 misc_RNA RN7SL627P 3 +28908 chr17 HAVANA gene 18835707 18842364 1300.0 + 0 ENSG00000250111.3 unprocessed_pseudogene AC107982.1 2 OTTHUMG00000059405.2 overlapping_locus +28909 chr17 HAVANA gene 18859354 18861466 463.0 - 0 ENSG00000264273.1 antisense AC107982.2 2 OTTHUMG00000179789.1 +28910 chr17 HAVANA gene 18908279 18908865 587.0 + 0 ENSG00000235672.1 transcribed_processed_pseudogene AC090286.2 1 OTTHUMG00000059404.1 pseudo_consens,overlapping_locus +28911 chr17 HAVANA gene 18840085 18931287 4734.0 + 0 ENSG00000141127.14 protein_coding PRPSAP2 1 OTTHUMG00000059406.7 ncRNA_host,overlapping_locus +28912 chr17 ENSEMBL gene 18943999 18944073 75.0 + 0 ENSG00000212618.1 snoRNA RF00324 3 +28913 chr17 HAVANA gene 18951625 18954149 1489.0 - 0 ENSG00000196893.3 antisense AC090286.1 2 OTTHUMG00000059413.1 +28914 chr17 HAVANA gene 18986148 18986334 187.0 - 0 ENSG00000263045.1 processed_pseudogene AC090286.3 2 OTTHUMG00000178225.1 overlapping_locus +28915 chr17 HAVANA gene 18968789 19004804 7876.0 - 0 ENSG00000188522.14 protein_coding FAM83G 2 OTTHUMG00000059411.10 overlapping_locus +28916 chr17 HAVANA gene 18950345 19022595 6451.0 + 0 ENSG00000154025.15 protein_coding SLC5A10 2 OTTHUMG00000178143.2 +28917 chr17 HAVANA gene 19030857 19033529 2673.0 + 0 ENSG00000279825.1 TEC AC003957.1 2 OTTHUMG00000178144.2 +28918 chr17 HAVANA gene 19020673 19047637 3107.0 - 0 ENSG00000154016.13 protein_coding GRAP 1 OTTHUMG00000059436.4 +28919 chr17 HAVANA gene 19061912 19062669 758.0 + 0 ENSG00000265185.5 snoRNA SNORD3B-1 2 OTTHUMG00000178499.2 +28920 chr17 HAVANA gene 19063346 19064136 791.0 - 0 ENSG00000262074.6 snoRNA SNORD3B-2 2 OTTHUMG00000178152.3 +28921 chr17 HAVANA gene 19082437 19084834 1329.0 + 0 ENSG00000265746.1 processed_pseudogene KYNUP2 1 OTTHUMG00000178390.1 pseudo_consens,overlapping_locus +28922 chr17 HAVANA gene 19077775 19087878 699.0 + 0 ENSG00000230197.6 lincRNA AC007952.3 2 OTTHUMG00000178239.1 overlapping_locus +28923 chr17 HAVANA gene 19091069 19091825 757.0 - 0 ENSG00000263394.1 lincRNA AC007952.7 2 OTTHUMG00000178392.2 +28924 chr17 HAVANA gene 19092974 19096837 3097.0 + 0 ENSG00000228157.4 processed_transcript AC007952.2 2 OTTHUMG00000059428.3 +28925 chr17 ENSEMBL gene 19112420 19112636 217.0 - 0 ENSG00000281000.1 snoRNA SNORD3D 3 +28926 chr17 ENSEMBL gene 19112419 19112636 218.0 - 0 ENSG00000277947.1 snoRNA SNORD3D 3 +28927 chr17 HAVANA gene 19112000 19112636 637.0 - 0 ENSG00000262202.4 lincRNA AC007952.4 2 OTTHUMG00000178158.2 ncRNA_host +28928 chr17 HAVANA gene 19141017 19143689 2673.0 - 0 ENSG00000262319.1 antisense AC007952.6 2 OTTHUMG00000178159.1 +28929 chr17 HAVANA gene 19150279 19151286 191.0 + 0 ENSG00000266664.1 sense_intronic AC007952.9 2 OTTHUMG00000179790.1 overlapping_locus +28930 chr17 HAVANA gene 19155727 19159111 1452.0 - 0 ENSG00000197665.7 antisense AC007952.1 2 OTTHUMG00000059429.4 +28931 chr17 HAVANA gene 19127469 19159176 2028.0 + 0 ENSG00000189152.10 protein_coding GRAPL 1 OTTHUMG00000059435.4 overlapping_locus +28932 chr17 HAVANA gene 19160789 19162274 1486.0 + 0 ENSG00000262292.2 lincRNA AC007952.5 2 OTTHUMG00000178165.2 +28933 chr17 HAVANA gene 19166896 19169668 1406.0 - 0 ENSG00000261987.2 unprocessed_pseudogene KYNUP1 1 OTTHUMG00000178493.1 pseudo_consens,overlapping_locus +28934 chr17 HAVANA gene 19164209 19174436 440.0 - 0 ENSG00000266311.6 lincRNA AC007952.8 2 OTTHUMG00000178492.1 overlapping_locus +28935 chr17 HAVANA gene 19188016 19188714 699.0 + 0 ENSG00000263934.4 snoRNA SNORD3A 2 OTTHUMG00000178445.2 +28936 chr17 HAVANA gene 19189665 19190245 581.0 - 0 ENSG00000264940.4 snoRNA SNORD3C 2 OTTHUMG00000178446.1 +28937 chr17 HAVANA gene 19208584 19211359 1341.0 + 0 ENSG00000263206.1 transcribed_unprocessed_pseudogene KYNUP3 1 OTTHUMG00000059430.2 pseudo_consens,overlapping_locus +28938 chr17 HAVANA gene 19203825 19214045 699.0 + 0 ENSG00000236022.6 lincRNA AC106017.1 2 OTTHUMG00000178240.1 overlapping_locus +28939 chr17 HAVANA gene 19219143 19222527 1452.0 + 0 ENSG00000281856.1 lincRNA AC106017.2 2 OTTHUMG00000189705.1 overlapping_locus +28940 chr17 HAVANA gene 19296596 19306261 1190.0 - 0 ENSG00000235397.1 antisense EPN2-AS1 2 OTTHUMG00000130623.1 +28941 chr17 HAVANA gene 19334308 19336127 1660.0 - 0 ENSG00000265263.1 antisense AC124066.1 2 OTTHUMG00000178449.2 +28942 chr17 HAVANA gene 19215615 19336715 8517.0 + 0 ENSG00000072134.15 protein_coding EPN2 1 OTTHUMG00000187034.3 overlapping_locus +28943 chr17 ENSEMBL gene 19344506 19344574 69.0 - 0 ENSG00000221540.1 miRNA MIR1180 3 +28944 chr17 HAVANA gene 19337554 19378193 3667.0 - 0 ENSG00000108641.15 protein_coding B9D1 2 OTTHUMG00000059586.9 ncRNA_host +28945 chr17 HAVANA gene 19377721 19383544 5196.0 + 0 ENSG00000166484.19 protein_coding MAPK7 2 OTTHUMG00000059587.8 +28946 chr17 HAVANA gene 19383442 19387240 2152.0 - 0 ENSG00000166482.11 protein_coding MFAP4 2 OTTHUMG00000059585.6 +28947 chr17 HAVANA gene 19411786 19413118 567.0 - 0 ENSG00000265126.1 antisense AC004448.3 2 OTTHUMG00000178829.1 +28948 chr17 HAVANA gene 19411125 19417276 3652.0 + 0 ENSG00000128482.15 protein_coding RNF112 2 OTTHUMG00000059601.8 +28949 chr17 ENSEMBL gene 19420279 19420342 64.0 + 0 ENSG00000283675.1 snoRNA RF00537 3 +28950 chr17 HAVANA gene 19419035 19424357 520.0 + 0 ENSG00000227078.1 lincRNA LINC02094 1 OTTHUMG00000059602.1 ncRNA_host +28951 chr17 HAVANA gene 19445970 19446852 883.0 - 0 ENSG00000189343.7 processed_pseudogene RPS2P46 1 OTTHUMG00000178199.1 pseudo_consens,overlapping_locus +28952 chr17 HAVANA gene 19457080 19458399 543.0 + 0 ENSG00000231477.2 lincRNA AC004448.1 2 OTTHUMG00000178200.1 +28953 chr17 HAVANA gene 19417804 19492991 4193.0 - 0 ENSG00000235979.8 lincRNA AC004448.2 2 OTTHUMG00000059605.6 +28954 chr17 HAVANA gene 19496943 19497528 586.0 + 0 ENSG00000228331.2 processed_pseudogene RPL17P43 1 OTTHUMG00000059604.2 pseudo_consens,overlapping_locus +28955 chr17 HAVANA gene 19557211 19557911 701.0 + 0 ENSG00000266079.4 snoRNA SNORA59B 2 OTTHUMG00000178478.1 overlapping_locus +28956 chr17 HAVANA gene 19495385 19579034 5719.0 + 0 ENSG00000142494.13 protein_coding SLC47A1 1 OTTHUMG00000059466.6 ncRNA_host,overlapping_locus +28957 chr17 HAVANA gene 19582116 19582275 160.0 - 0 ENSG00000263107.1 processed_pseudogene AC025627.2 2 OTTHUMG00000178203.1 overlapping_locus +28958 chr17 HAVANA gene 19579943 19596058 1402.0 + 0 ENSG00000228983.9 transcribed_unprocessed_pseudogene SLC47A1P1 2 OTTHUMG00000130722.4 +28959 chr17 HAVANA gene 19560111 19597922 730.0 - 0 ENSG00000262769.1 antisense AC025627.1 2 OTTHUMG00000178202.1 overlapping_locus +28960 chr17 HAVANA gene 19600860 19601345 182.0 + 0 ENSG00000266179.2 processed_pseudogene AC025627.3 2 OTTHUMG00000178522.3 +28961 chr17 HAVANA gene 19601840 19602256 104.0 + 0 ENSG00000271900.1 processed_pseudogene AC025627.4 2 OTTHUMG00000185797.1 +28962 chr17 HAVANA gene 19602259 19603208 950.0 + 0 ENSG00000227225.1 unprocessed_pseudogene MTND1P14 2 OTTHUMG00000059467.1 +28963 chr17 HAVANA gene 19603274 19603345 72.0 - 0 ENSG00000242752.3 unprocessed_pseudogene NMTRQ-TTG12-1 2 OTTHUMG00000178523.2 +28964 chr17 HAVANA gene 19603797 19605048 1252.0 + 0 ENSG00000228725.3 unprocessed_pseudogene MTND2P12 2 OTTHUMG00000059468.3 +28965 chr17 HAVANA gene 19605454 19605933 480.0 + 0 ENSG00000224254.2 unprocessed_pseudogene MTCO1P39 2 OTTHUMG00000059470.2 +28966 chr17 HAVANA gene 19615789 19633825 1483.0 + 0 ENSG00000231625.4 transcribed_unprocessed_pseudogene SLC47A1P2 1 OTTHUMG00000178204.4 +28967 chr17 ENSEMBL gene 19649494 19649587 94.0 - 0 ENSG00000275982.1 misc_RNA RF00019 3 +28968 chr17 HAVANA gene 19649373 19649935 563.0 - 0 ENSG00000264932.3 antisense AC115989.1 2 OTTHUMG00000178516.1 ncRNA_host +28969 chr17 ENSEMBL gene 19662000 19662090 91.0 + 0 ENSG00000252349.1 snoRNA RF00322 3 +28970 chr17 HAVANA gene 19648136 19677598 6457.0 + 0 ENSG00000072210.18 protein_coding ALDH3A2 1 OTTHUMG00000059471.7 ncRNA_host +28971 chr17 HAVANA gene 19678288 19718979 6691.0 - 0 ENSG00000180638.17 protein_coding SLC47A2 2 OTTHUMG00000059464.8 +28972 chr17 HAVANA gene 19719059 19722428 3370.0 + 0 ENSG00000262681.2 lincRNA AC005722.2 2 OTTHUMG00000178220.2 +28973 chr17 HAVANA gene 19737682 19738542 446.0 + 0 ENSG00000264785.1 antisense AC005722.3 2 OTTHUMG00000178847.1 +28974 chr17 HAVANA gene 19737984 19748943 3918.0 - 0 ENSG00000108602.17 protein_coding ALDH3A1 2 OTTHUMG00000059469.11 +28975 chr17 HAVANA gene 19755244 19756207 964.0 + 0 ENSG00000230607.3 processed_pseudogene AC005722.1 2 OTTHUMG00000059510.4 +28976 chr17 HAVANA gene 19840126 19840515 390.0 + 0 ENSG00000231096.1 processed_pseudogene NDUFB4P3 1 OTTHUMG00000059509.1 pseudo_consens +28977 chr17 HAVANA gene 19855747 19856164 418.0 + 0 ENSG00000279251.1 TEC AC015726.3 2 OTTHUMG00000178221.2 +28978 chr17 HAVANA gene 19770829 19867936 9843.0 - 0 ENSG00000083290.19 protein_coding ULK2 1 OTTHUMG00000059511.6 +28979 chr17 HAVANA gene 19868568 19868689 122.0 + 0 ENSG00000276406.1 lincRNA AC015726.2 2 OTTHUMG00000186635.1 +28980 chr17 HAVANA gene 19896590 19897287 698.0 - 0 ENSG00000270091.1 lincRNA AC015726.1 2 OTTHUMG00000184070.1 +28981 chr17 HAVANA gene 19929372 19929737 366.0 - 0 ENSG00000266126.1 sense_intronic AC005730.3 2 OTTHUMG00000178491.1 overlapping_locus +28982 chr17 HAVANA gene 19904302 19978343 4848.0 - 0 ENSG00000108599.14 protein_coding AKAP10 1 OTTHUMG00000059515.8 overlapping_locus +28983 chr17 HAVANA gene 20008051 20009234 1184.0 - 0 ENSG00000261033.1 antisense AC005730.2 2 OTTHUMG00000175977.2 +28984 chr17 HAVANA gene 20056287 20056630 344.0 + 0 ENSG00000225681.2 transcribed_processed_pseudogene AC005730.1 1 OTTHUMG00000059507.1 pseudo_consens,overlapping_locus +28985 chr17 HAVANA gene 20111824 20112990 1167.0 + 0 ENSG00000225014.1 transcribed_processed_pseudogene KCTD9P1 1 OTTHUMG00000059512.1 pseudo_consens,overlapping_locus +28986 chr17 ENSEMBL gene 20126388 20126488 101.0 - 0 ENSG00000212186.1 snRNA RNU6-258P 3 +28987 chr17 ENSEMBL gene 20290257 20290358 102.0 + 0 ENSG00000252971.1 snRNA RNU6-1057P 3 +28988 chr17 HAVANA gene 20009344 20319026 13676.0 + 0 ENSG00000128487.16 protein_coding SPECC1 1 OTTHUMG00000179808.4 ncRNA_host,overlapping_locus +28989 chr17 HAVANA gene 20185082 20322973 195.0 + 0 ENSG00000263494.1 lincRNA AC004702.1 2 OTTHUMG00000178883.2 ncRNA_host,overlapping_locus +28990 chr17 ENSEMBL gene 20323001 20323110 110.0 + 0 ENSG00000276577.1 snRNA RNU6-467P 3 +28991 chr17 HAVANA gene 20323058 20323337 280.0 + 0 ENSG00000266839.3 sense_intronic AC008088.1 2 OTTHUMG00000178568.2 overlapping_locus +28992 chr17 ENSEMBL gene 20340743 20341045 303.0 + 0 ENSG00000278701.1 misc_RNA RF00017 3 +28993 chr17 HAVANA gene 20375369 20376840 1472.0 - 0 ENSG00000214832.5 transcribed_processed_pseudogene UPF3AP2 1 OTTHUMG00000059514.4 pseudo_consens +28994 chr17 HAVANA gene 20321164 20403557 8145.0 + 0 ENSG00000154898.15 transcribed_processed_pseudogene CCDC144CP 2 OTTHUMG00000059513.3 overlapping_locus +28995 chr17 HAVANA gene 20415792 20416697 344.0 - 0 ENSG00000237911.2 unprocessed_pseudogene SRP68P3 2 OTTHUMG00000130729.3 +28996 chr17 HAVANA gene 20415547 20431008 1943.0 + 0 ENSG00000189423.12 transcribed_unprocessed_pseudogene USP32P3 2 OTTHUMG00000179809.3 overlapping_locus +28997 chr17 HAVANA gene 20433206 20434285 301.0 + 0 ENSG00000265556.1 lincRNA LINC01984 2 OTTHUMG00000178378.1 +28998 chr17 HAVANA gene 20436337 20447249 3643.0 + 0 ENSG00000230528.7 transcribed_unprocessed_pseudogene NOS2P3 2 OTTHUMG00000130731.3 +28999 chr17 HAVANA gene 20449395 20467539 2670.0 - 0 ENSG00000170298.15 protein_coding LGALS9B 2 OTTHUMG00000130730.2 +29000 chr17 HAVANA gene 20481330 20483991 2662.0 - 0 ENSG00000229586.2 processed_pseudogene TNPO1P3 1 OTTHUMG00000178885.1 pseudo_consens +29001 chr17 HAVANA gene 20491323 20491443 121.0 - 0 ENSG00000263976.1 processed_pseudogene YWHAEP3 2 OTTHUMG00000130728.2 +29002 chr17 HAVANA gene 20493634 20494155 522.0 - 0 ENSG00000230088.1 processed_pseudogene KRT16P5 2 OTTHUMG00000130721.1 +29003 chr17 HAVANA gene 20507413 20508931 1519.0 - 0 ENSG00000266925.1 lincRNA AC015818.8 2 OTTHUMG00000178886.1 overlapping_locus +29004 chr17 HAVANA gene 20501513 20512357 2351.0 - 0 ENSG00000214822.8 transcribed_unprocessed_pseudogene KRT16P3 2 OTTHUMG00000130724.4 overlapping_locus +29005 chr17 HAVANA gene 20512560 20517479 1553.0 - 0 ENSG00000231645.2 transcribed_unprocessed_pseudogene KRT17P6 2 OTTHUMG00000130723.3 +29006 chr17 HAVANA gene 20526102 20526210 109.0 + 0 ENSG00000266042.1 processed_pseudogene AC015818.7 2 OTTHUMG00000130735.3 +29007 chr17 HAVANA gene 20519312 20528687 2625.0 - 0 ENSG00000205215.8 transcribed_unprocessed_pseudogene KRT17P7 2 OTTHUMG00000130726.2 +29008 chr17 HAVANA gene 20530042 20530881 840.0 - 0 ENSG00000260907.1 lincRNA AC015818.2 2 OTTHUMG00000132845.1 +29009 chr17 HAVANA gene 20532248 20532881 634.0 - 0 ENSG00000265916.1 processed_pseudogene AC015818.6 2 OTTHUMG00000178887.1 +29010 chr17 HAVANA gene 20542974 20544123 356.0 - 0 ENSG00000264981.1 unprocessed_pseudogene AC015818.5 2 OTTHUMG00000178888.1 overlapping_locus +29011 chr17 HAVANA gene 20545371 20549952 4582.0 + 0 ENSG00000267075.1 lincRNA AC015818.9 2 OTTHUMG00000178379.2 +29012 chr17 HAVANA gene 20543481 20550963 1080.0 - 0 ENSG00000235203.2 unprocessed_pseudogene TBC1D3P3 2 OTTHUMG00000130732.2 overlapping_locus +29013 chr17 HAVANA gene 20554137 20554380 244.0 + 0 ENSG00000230339.2 processed_pseudogene AC015818.1 2 OTTHUMG00000178889.1 +29014 chr17 HAVANA gene 20554971 20559410 739.0 - 0 ENSG00000263946.1 transcribed_processed_pseudogene AC015818.3 2 OTTHUMG00000178890.2 +29015 chr17 HAVANA gene 20564538 20564889 352.0 + 0 ENSG00000235323.2 processed_pseudogene COTL1P2 1 OTTHUMG00000130733.2 pseudo_consens +29016 chr17 HAVANA gene 20576667 20578748 353.0 - 0 ENSG00000264422.1 lincRNA AC015818.4 2 OTTHUMG00000178913.1 +29017 chr17 HAVANA gene 20579724 20580911 1048.0 + 0 ENSG00000214819.1 protein_coding CDRT15L2 2 OTTHUMG00000059557.3 +29018 chr17 HAVANA gene 20589293 20590367 1075.0 + 0 ENSG00000188013.6 processed_pseudogene MEIS3P2 1 OTTHUMG00000059559.4 pseudo_consens +29019 chr17 HAVANA gene 20583758 20591180 2038.0 - 0 ENSG00000231258.2 unprocessed_pseudogene ZSWIM5P2 1 OTTHUMG00000059558.2 pseudo_consens +29020 chr17 HAVANA gene 20595531 20595708 178.0 + 0 ENSG00000232889.2 processed_pseudogene AC087499.3 2 OTTHUMG00000059560.2 +29021 chr17 HAVANA gene 20609462 20609610 149.0 - 0 ENSG00000226096.1 processed_pseudogene AC087499.1 2 OTTHUMG00000059565.1 +29022 chr17 HAVANA gene 20612667 20614008 1342.0 + 0 ENSG00000235546.2 processed_pseudogene AC087499.4 1 OTTHUMG00000059561.2 pseudo_consens +29023 chr17 HAVANA gene 20612912 20633234 620.0 - 0 ENSG00000227685.1 lincRNA LINC02088 2 OTTHUMG00000059551.1 overlapping_locus +29024 chr17 HAVANA gene 20633034 20633259 226.0 - 0 ENSG00000266364.1 transcribed_processed_pseudogene AC087499.7 2 OTTHUMG00000178914.1 overlapping_locus +29025 chr17 HAVANA gene 20647287 20681799 835.0 + 0 ENSG00000236504.2 unprocessed_pseudogene AC087499.5 2 OTTHUMG00000059563.2 +29026 chr17 HAVANA gene 20710425 20710533 109.0 - 0 ENSG00000264874.1 processed_pseudogene AC087499.6 2 OTTHUMG00000059564.2 +29027 chr17 HAVANA gene 20716481 20737127 1500.0 + 0 ENSG00000226521.7 transcribed_unprocessed_pseudogene AC087499.2 2 OTTHUMG00000059552.2 +29028 chr17 HAVANA gene 20743333 20754501 1052.0 - 0 ENSG00000187870.7 unprocessed_pseudogene RNFT1P3 2 OTTHUMG00000059553.2 +29029 chr17 HAVANA gene 20771058 20771427 370.0 - 0 ENSG00000218454.2 processed_pseudogene HNRNPA1P19 1 OTTHUMG00000059554.2 pseudo_consens +29030 chr17 HAVANA gene 20775642 20776905 1264.0 + 0 ENSG00000213671.3 processed_pseudogene OLA1P2 1 OTTHUMG00000059555.3 pseudo_consens +29031 chr17 HAVANA gene 20784645 20785725 1081.0 + 0 ENSG00000226549.3 processed_pseudogene SCDP1 1 OTTHUMG00000059556.2 pseudo_consens +29032 chr17 HAVANA gene 20788071 20789584 1514.0 + 0 ENSG00000264215.1 lincRNA AC126365.1 2 OTTHUMG00000175982.1 +29033 chr17 HAVANA gene 20789217 20789595 379.0 - 0 ENSG00000264662.1 processed_pseudogene AC126365.2 2 OTTHUMG00000178996.1 +29034 chr17 HAVANA gene 20814620 20844257 1044.0 + 0 ENSG00000226981.2 unprocessed_pseudogene ABHD17AP6 2 OTTHUMG00000132836.2 +29035 chr17 HAVANA gene 20855946 20857317 1372.0 + 0 ENSG00000266369.1 antisense AC090774.2 2 OTTHUMG00000178997.1 +29036 chr17 ENSEMBL gene 20894532 20894638 107.0 - 0 ENSG00000252483.1 snRNA RNU6-1178P 3 +29037 chr17 HAVANA gene 20836447 20896140 3436.0 - 0 ENSG00000205212.4 protein_coding CCDC144NL 2 OTTHUMG00000132271.4 ncRNA_host +29038 chr17 HAVANA gene 20901939 20902680 742.0 - 0 ENSG00000265790.1 processed_pseudogene RNASEH1P1 1 OTTHUMG00000178915.1 pseudo_consens +29039 chr17 HAVANA gene 20938023 20938344 322.0 - 0 ENSG00000265099.1 processed_pseudogene AC090774.1 2 OTTHUMG00000178916.2 +29040 chr17 HAVANA gene 20956682 20958404 246.0 + 0 ENSG00000244456.2 transcribed_unprocessed_pseudogene SPECC1P2 2 OTTHUMG00000130761.2 overlapping_locus +29041 chr17 HAVANA gene 20963722 20980238 621.0 + 0 ENSG00000264660.2 antisense AC107926.1 2 OTTHUMG00000178938.1 overlapping_locus +29042 chr17 HAVANA gene 20981489 20981654 166.0 + 0 ENSG00000266009.1 transcribed_processed_pseudogene AC087393.3 2 OTTHUMG00000178939.1 overlapping_locus +29043 chr17 HAVANA gene 20983902 20984046 145.0 + 0 ENSG00000263729.1 processed_pseudogene AC087393.1 2 OTTHUMG00000178998.1 overlapping_locus +29044 chr17 HAVANA gene 20999747 21000323 504.0 + 0 ENSG00000263986.1 antisense AC087393.2 2 OTTHUMG00000178940.1 overlapping_locus +29045 chr17 HAVANA gene 20868433 21002276 10225.0 + 0 ENSG00000233098.8 antisense CCDC144NL-AS1 2 OTTHUMG00000178937.4 overlapping_locus +29046 chr17 HAVANA gene 20999593 21043760 6808.0 - 0 ENSG00000124422.11 protein_coding USP22 1 OTTHUMG00000133621.5 +29047 chr17 HAVANA gene 21075556 21090615 750.0 + 0 ENSG00000236819.1 lincRNA LINC01563 2 OTTHUMG00000130762.1 +29048 chr17 HAVANA gene 21123364 21193265 5544.0 + 0 ENSG00000109016.17 protein_coding DHRS7B 1 OTTHUMG00000178944.7 +29049 chr17 HAVANA gene 21197280 21214624 3309.0 - 0 ENSG00000178307.9 protein_coding TMEM11 2 OTTHUMG00000178971.3 +29050 chr17 ENSEMBL gene 21229334 21229628 295.0 - 0 ENSG00000263815.2 misc_RNA RN7SL426P 3 +29051 chr17 HAVANA gene 21214331 21230035 1519.0 + 0 ENSG00000235530.6 antisense AC087294.1 2 OTTHUMG00000130765.2 +29052 chr17 HAVANA gene 21238870 21253410 4931.0 - 0 ENSG00000274180.1 protein_coding NATD1 2 OTTHUMG00000130764.7 +29053 chr17 HAVANA gene 21259968 21260501 234.0 - 0 ENSG00000266563.1 unprocessed_pseudogene EIF1P5 2 OTTHUMG00000178972.2 +29054 chr17 HAVANA gene 21284672 21315240 3783.0 + 0 ENSG00000034152.18 protein_coding MAP2K3 1 OTTHUMG00000134322.6 +29055 chr17 HAVANA gene 21376197 21419872 5617.0 + 0 ENSG00000184185.9 protein_coding KCNJ12 2 OTTHUMG00000132039.3 retrogene +29056 chr17 HAVANA gene 21444833 21445439 607.0 - 0 ENSG00000265881.1 processed_pseudogene PDLIM1P2 1 OTTHUMG00000179030.1 pseudo_consens +29057 chr17 HAVANA gene 21457434 21458989 404.0 + 0 ENSG00000264023.1 lincRNA AC068418.1 2 OTTHUMG00000179015.1 +29058 chr17 HAVANA gene 21456513 21460215 3703.0 - 0 ENSG00000265043.1 lincRNA AC068418.2 2 OTTHUMG00000175986.2 +29059 chr17 HAVANA gene 21504558 21505059 502.0 + 0 ENSG00000244582.2 processed_pseudogene RPL21P120 1 OTTHUMG00000157750.3 pseudo_consens +29060 chr17 HAVANA gene 21519514 21521269 396.0 + 0 ENSG00000265265.1 lincRNA AC233702.5 2 OTTHUMG00000179816.1 +29061 chr17 HAVANA gene 21532974 21542786 965.0 + 0 ENSG00000266466.1 antisense AC233702.7 2 OTTHUMG00000179003.1 +29062 chr17 HAVANA gene 21552509 21552711 203.0 + 0 ENSG00000266673.1 processed_pseudogene AC233702.8 1 OTTHUMG00000179004.1 pseudo_consens +29063 chr17 HAVANA gene 21573536 21573746 211.0 - 0 ENSG00000266050.3 transcribed_processed_pseudogene AC233702.6 2 OTTHUMG00000179016.1 overlapping_locus +29064 chr17 HAVANA gene 21573770 21574073 304.0 + 0 ENSG00000264245.1 processed_pseudogene AC233702.3 2 OTTHUMG00000179017.1 +29065 chr17 HAVANA gene 21428381 21574517 14794.0 - 0 ENSG00000212719.11 protein_coding C17orf51 1 OTTHUMG00000132832.5 overlapping_locus +29066 chr17 HAVANA gene 21592794 21594180 1387.0 + 0 ENSG00000263375.1 processed_pseudogene AC233702.2 1 OTTHUMG00000179018.2 pseudo_consens +29067 chr17 HAVANA gene 21614487 21641536 583.0 + 0 ENSG00000260157.3 transcribed_unprocessed_pseudogene AC233702.1 2 OTTHUMG00000175860.1 +29068 chr17 HAVANA gene 21655843 21657633 538.0 - 0 ENSG00000264617.1 unprocessed_pseudogene AC233702.4 2 OTTHUMG00000179021.2 +29069 chr17 HAVANA gene 21678086 21678418 333.0 + 0 ENSG00000274748.1 unprocessed_pseudogene AC233702.9 2 OTTHUMG00000175862.1 +29070 chr17 HAVANA gene 21692523 21704612 2196.0 + 0 ENSG00000260458.3 protein_coding KCNJ18 2 OTTHUMG00000175863.1 +29071 chr17 HAVANA gene 21773754 21783465 436.0 - 0 ENSG00000283566.2 unprocessed_pseudogene AC243725.1 2 OTTHUMG00000191883.2 +29072 chr17 HAVANA gene 22056587 22056755 169.0 - 0 ENSG00000265233.1 processed_pseudogene ABBA01006766.1 2 OTTHUMG00000179020.1 +29073 chr17 HAVANA gene 22061961 22070538 294.0 - 0 ENSG00000265019.1 unprocessed_pseudogene NCOR1P2 2 OTTHUMG00000179019.1 +29074 chr17 HAVANA gene 22090743 22205154 1815.0 + 0 ENSG00000263563.6 transcribed_unprocessed_pseudogene UBBP4 2 OTTHUMG00000179059.5 +29075 chr17 HAVANA gene 22221221 22221605 385.0 + 0 ENSG00000263725.1 processed_pseudogene FTLP13 1 OTTHUMG00000179060.1 pseudo_consens +29076 chr17 HAVANA gene 22234328 22266362 1675.0 - 0 ENSG00000263609.1 lincRNA LINC02002 2 OTTHUMG00000179080.2 +29077 chr17 HAVANA gene 22277867 22279289 1423.0 - 0 ENSG00000266691.1 processed_pseudogene AC138761.5 1 OTTHUMG00000179081.1 pseudo_consens +29078 chr17 HAVANA gene 22266425 22288133 2920.0 + 0 ENSG00000264956.1 lincRNA AC138761.3 2 OTTHUMG00000179061.1 +29079 chr17 HAVANA gene 22299134 22299467 334.0 - 0 ENSG00000264811.1 processed_pseudogene AC138761.2 2 OTTHUMG00000179082.1 +29080 chr17 HAVANA gene 22298691 22299893 693.0 + 0 ENSG00000178130.9 lincRNA FAM27E5 2 OTTHUMG00000166302.2 +29081 chr17 HAVANA gene 22301333 22301657 325.0 - 0 ENSG00000265567.1 processed_pseudogene AC138761.4 2 OTTHUMG00000179083.1 +29082 chr17 HAVANA gene 22305671 22306013 343.0 - 0 ENSG00000264562.1 processed_pseudogene AC138761.1 2 OTTHUMG00000179084.1 +29083 chr17 HAVANA gene 22331597 22332410 229.0 + 0 ENSG00000266806.1 unprocessed_pseudogene AC087575.1 2 OTTHUMG00000179063.1 +29084 chr17 HAVANA gene 22411893 22412229 337.0 - 0 ENSG00000266746.1 processed_pseudogene AC209154.1 2 OTTHUMG00000179088.1 +29085 chr17 HAVANA gene 22406019 22413744 3801.0 + 0 ENSG00000276399.1 lincRNA FLJ36000 2 OTTHUMG00000180381.3 +29086 chr17 HAVANA gene 22420022 22424731 4710.0 + 0 ENSG00000261020.1 lincRNA AC132825.3 2 OTTHUMG00000175987.1 +29087 chr17 HAVANA gene 22435390 22439033 3644.0 + 0 ENSG00000266885.2 transcribed_processed_pseudogene AC132825.4 2 OTTHUMG00000179822.2 +29088 chr17 HAVANA gene 22519195 22519504 310.0 - 0 ENSG00000283879.1 unprocessed_pseudogene AC132825.5 2 OTTHUMG00000191891.1 +29089 chr17 HAVANA gene 22519617 22520709 1093.0 + 0 ENSG00000266529.1 unprocessed_pseudogene MTCYBP13 2 OTTHUMG00000179067.1 +29090 chr17 HAVANA gene 22523111 22524663 1553.0 + 0 ENSG00000256618.2 protein_coding MTRNR2L1 2 OTTHUMG00000179068.2 +29091 chr17 HAVANA gene 22524563 22525330 504.0 - 0 ENSG00000243655.2 antisense AC132825.2 2 OTTHUMG00000179091.1 +29092 chr17 HAVANA gene 22524738 22525686 949.0 + 0 ENSG00000264168.2 transcribed_unprocessed_pseudogene MTND1P15 2 OTTHUMG00000179069.3 +29093 chr17 HAVANA gene 22525899 22526937 1039.0 + 0 ENSG00000263914.1 unprocessed_pseudogene MTND2P13 2 OTTHUMG00000179070.1 +29094 chr17 HAVANA gene 22528853 22528921 69.0 - 0 ENSG00000241225.2 unprocessed_pseudogene NMTRS-TGA3-1 2 OTTHUMG00000179090.2 +29095 chr17 HAVANA gene 22527324 22529570 2247.0 + 0 ENSG00000240103.2 unprocessed_pseudogene AC132825.1 2 OTTHUMG00000179071.3 +29096 chr17 HAVANA gene 22529934 22530609 676.0 + 0 ENSG00000263483.1 unprocessed_pseudogene MTATP6P3 2 OTTHUMG00000179092.2 +29097 chr17 HAVANA gene 22530612 22531392 781.0 + 0 ENSG00000264316.1 unprocessed_pseudogene MTCO3P13 2 OTTHUMG00000179093.1 +29098 chr17 HAVANA gene 22531463 22531797 335.0 + 0 ENSG00000284300.1 unprocessed_pseudogene AC132825.7 2 OTTHUMG00000191892.1 +29099 chr17 HAVANA gene 22531876 22532172 297.0 + 0 ENSG00000284328.1 unprocessed_pseudogene AC132825.8 2 OTTHUMG00000191893.1 overlapping_locus +29100 chr17 HAVANA gene 22532166 22532522 357.0 + 0 ENSG00000284263.1 unprocessed_pseudogene AC132825.6 2 OTTHUMG00000191894.1 overlapping_locus +29101 chr17 HAVANA gene 22567423 22568713 248.0 - 0 ENSG00000275480.1 unprocessed_pseudogene AC131055.2 2 OTTHUMG00000187940.1 +29102 chr17 HAVANA gene 22606388 22606703 316.0 + 0 ENSG00000264930.1 processed_pseudogene AC131055.1 2 OTTHUMG00000179094.1 +29103 chr17 HAVANA gene 22676695 22692618 254.0 - 0 ENSG00000264262.1 lincRNA AC131274.1 2 OTTHUMG00000179095.1 +29104 chr17 HAVANA gene 22693325 22694831 1507.0 - 0 ENSG00000264431.1 processed_pseudogene AC131274.2 1 OTTHUMG00000179097.2 pseudo_consens +29105 chr17 HAVANA gene 22671433 22706703 2969.0 + 0 ENSG00000264970.2 processed_pseudogene AC131274.3 1 OTTHUMG00000179098.3 pseudo_consens +29106 chr17 HAVANA gene 26981694 26982090 397.0 + 0 ENSG00000263433.1 processed_pseudogene AC069061.1 2 OTTHUMG00000179149.1 +29107 chr17 HAVANA gene 26989189 26999941 720.0 - 0 ENSG00000264734.1 lincRNA AC069061.2 2 OTTHUMG00000179164.1 +29108 chr17 HAVANA gene 27002661 27003259 599.0 - 0 ENSG00000264172.1 processed_pseudogene PDLIM1P3 1 OTTHUMG00000179165.1 pseudo_consens +29109 chr17 HAVANA gene 27019527 27047934 541.0 - 0 ENSG00000266736.1 unprocessed_pseudogene GTF2IP6 2 OTTHUMG00000179166.1 +29110 chr17 HAVANA gene 27057399 27058221 823.0 + 0 ENSG00000264837.1 processed_pseudogene VN1R71P 2 OTTHUMG00000179150.1 +29111 chr17 HAVANA gene 27082690 27084036 1347.0 - 0 ENSG00000265646.2 processed_pseudogene TUFMP1 1 OTTHUMG00000179167.1 pseudo_consens +29112 chr17 HAVANA gene 27089545 27170310 1157.0 + 0 ENSG00000285822.1 lincRNA AC129926.2 2 OTTHUMG00000193097.1 +29113 chr17 HAVANA gene 27237859 27241661 614.0 - 0 ENSG00000265246.1 lincRNA AC129926.1 2 OTTHUMG00000179151.2 +29114 chr17 HAVANA gene 27274107 27274477 371.0 + 0 ENSG00000239223.3 processed_pseudogene RPL34P31 1 OTTHUMG00000157754.1 pseudo_consens +29115 chr17 HAVANA gene 27280482 27280912 431.0 + 0 ENSG00000213664.4 processed_pseudogene RPS16P8 1 OTTHUMG00000157757.1 pseudo_consens +29116 chr17 HAVANA gene 27281094 27281415 322.0 + 0 ENSG00000265453.1 processed_pseudogene AC026254.1 1 OTTHUMG00000179152.1 pseudo_consens +29117 chr17 ENSEMBL gene 27293910 27293996 87.0 - 0 ENSG00000263583.1 miRNA MIR4522 3 +29118 chr17 HAVANA gene 27294076 27315926 8602.0 + 0 ENSG00000109046.14 protein_coding WSB1 1 OTTHUMG00000132293.6 +29119 chr17 HAVANA gene 27333256 27348491 454.0 + 0 ENSG00000266313.1 lincRNA AC026254.2 2 OTTHUMG00000179153.1 +29120 chr17 HAVANA gene 27351858 27352584 727.0 - 0 ENSG00000265683.1 processed_pseudogene SYPL1P2 1 OTTHUMG00000179154.1 pseudo_consens +29121 chr17 HAVANA gene 27411438 27412806 154.0 - 0 ENSG00000266356.1 unprocessed_pseudogene AC090615.1 1 OTTHUMG00000179155.1 pseudo_consens +29122 chr17 HAVANA gene 27417690 27431623 4659.0 + 0 ENSG00000266433.6 transcribed_unprocessed_pseudogene TBC1D3P5 2 OTTHUMG00000179156.2 +29123 chr17 HAVANA gene 27465112 27465541 430.0 + 0 ENSG00000265801.1 sense_intronic AC069366.2 2 OTTHUMG00000179195.1 overlapping_locus +29124 chr17 HAVANA gene 27526386 27527223 838.0 - 0 ENSG00000263368.1 processed_pseudogene AC069366.1 1 OTTHUMG00000179157.1 pseudo_consens +29125 chr17 HAVANA gene 27612588 27613251 664.0 - 0 ENSG00000266853.1 processed_pseudogene ITM2BP1 1 OTTHUMG00000179257.1 pseudo_consens +29126 chr17 HAVANA gene 27625484 27626438 656.0 - 0 ENSG00000266872.1 antisense AC015688.6 2 OTTHUMG00000179258.1 +29127 chr17 HAVANA gene 27456470 27626438 12178.0 + 0 ENSG00000141068.14 protein_coding KSR1 1 OTTHUMG00000132051.14 overlapping_locus +29128 chr17 HAVANA gene 27623364 27640777 730.0 + 0 ENSG00000266728.5 protein_coding AC015688.4 2 OTTHUMG00000132437.23 overlapping_locus +29129 chr17 HAVANA gene 27629798 27649560 5714.0 + 0 ENSG00000168961.16 protein_coding LGALS9 1 OTTHUMG00000179831.19 overlapping_locus +29130 chr17 HAVANA gene 27651334 27665712 1647.0 - 0 ENSG00000265788.2 transcribed_unprocessed_pseudogene NOS2P1 1 OTTHUMG00000179197.3 pseudo_consens +29131 chr17 HAVANA gene 27666749 27672803 942.0 - 0 ENSG00000265041.1 unprocessed_pseudogene AC015688.3 2 OTTHUMG00000179199.3 +29132 chr17 HAVANA gene 27675894 27675997 104.0 - 0 ENSG00000266771.1 processed_pseudogene AC015688.5 2 OTTHUMG00000179259.1 +29133 chr17 HAVANA gene 27677805 27678087 283.0 - 0 ENSG00000264240.1 processed_pseudogene CPDP1 2 OTTHUMG00000179200.1 +29134 chr17 HAVANA gene 27682476 27682737 262.0 + 0 ENSG00000264689.1 processed_pseudogene AC015688.2 2 OTTHUMG00000179201.1 +29135 chr17 HAVANA gene 27683946 27684144 199.0 - 0 ENSG00000263604.1 processed_pseudogene AC015688.1 2 OTTHUMG00000179202.1 +29136 chr17 HAVANA gene 27707178 27707250 73.0 + 0 ENSG00000265833.1 processed_pseudogene AC130289.1 2 OTTHUMG00000179203.1 +29137 chr17 HAVANA gene 27708111 27708138 28.0 + 0 ENSG00000266416.1 processed_pseudogene AC130289.2 2 OTTHUMG00000179204.1 +29138 chr17 HAVANA gene 27746132 27754954 764.0 + 0 ENSG00000266786.1 unprocessed_pseudogene LGALS9DP 2 OTTHUMG00000179205.1 +29139 chr17 HAVANA gene 27756766 27800499 4176.0 - 0 ENSG00000007171.17 protein_coding NOS2 2 OTTHUMG00000132445.2 overlapping_locus +29140 chr17 HAVANA gene 27874645 27881237 2266.0 + 0 ENSG00000266527.1 antisense AC005697.2 2 OTTHUMG00000179206.1 +29141 chr17 HAVANA gene 27798806 27893365 582.0 - 0 ENSG00000266202.1 protein_coding AC005697.1 1 OTTHUMG00000179275.1 overlapping_locus +29142 chr17 HAVANA gene 27878314 27894752 5380.0 - 0 ENSG00000232859.9 protein_coding LYRM9 1 OTTHUMG00000132829.10 overlapping_locus +29143 chr17 HAVANA gene 27929548 27974223 1340.0 - 0 ENSG00000260019.1 lincRNA LINC01992 2 OTTHUMG00000175990.1 +29144 chr17 ENSEMBL gene 28018770 28018907 138.0 + 0 ENSG00000251818.1 scaRNA RF00601 3 +29145 chr17 HAVANA gene 28021668 28022265 291.0 - 0 ENSG00000266190.1 unprocessed_pseudogene AC090287.1 2 OTTHUMG00000179207.1 +29146 chr17 ENSEMBL gene 28022330 28022464 135.0 - 0 ENSG00000202389.1 snoRNA RF00156 3 +29147 chr17 ENSEMBL gene 28061967 28062068 102.0 + 0 ENSG00000252283.1 misc_RNA RF00006 3 +29148 chr17 HAVANA gene 28116239 28116406 168.0 - 0 ENSG00000240873.1 processed_pseudogene RPS29P22 1 OTTHUMG00000157761.1 pseudo_consens +29149 chr17 HAVANA gene 28041737 28196381 5290.0 + 0 ENSG00000087095.12 protein_coding NLK 2 OTTHUMG00000132451.8 ncRNA_host +29150 chr17 HAVANA gene 28219285 28220005 721.0 + 0 ENSG00000267644.1 lincRNA AC061975.7 2 OTTHUMG00000179437.1 +29151 chr17 HAVANA gene 28226563 28228065 1076.0 + 0 ENSG00000237575.4 transcribed_unprocessed_pseudogene PYY2 2 OTTHUMG00000132450.2 +29152 chr17 HAVANA gene 28232590 28235281 2692.0 - 0 ENSG00000267259.1 lincRNA ERVE-1 2 OTTHUMG00000179417.1 +29153 chr17 HAVANA gene 28246454 28248006 1553.0 - 0 ENSG00000266830.1 lincRNA AC061975.6 2 OTTHUMG00000179418.1 +29154 chr17 HAVANA gene 28247444 28248289 846.0 + 0 ENSG00000265060.1 transcribed_unprocessed_pseudogene PPY2P 2 OTTHUMG00000179302.1 +29155 chr17 HAVANA gene 28256375 28256669 295.0 - 0 ENSG00000263788.1 processed_pseudogene AC061975.2 2 OTTHUMG00000179419.1 +29156 chr17 HAVANA gene 28256438 28265551 776.0 + 0 ENSG00000264486.1 lincRNA AC061975.4 2 OTTHUMG00000179303.1 +29157 chr17 HAVANA gene 28263634 28266369 2736.0 - 0 ENSG00000260777.1 lincRNA AC061975.1 2 OTTHUMG00000175995.1 +29158 chr17 HAVANA gene 28269203 28272365 1441.0 - 0 ENSG00000266306.1 unprocessed_pseudogene AC061975.5 2 OTTHUMG00000179420.1 +29159 chr17 HAVANA gene 28274657 28275716 244.0 - 0 ENSG00000264029.1 unprocessed_pseudogene AC061975.3 2 OTTHUMG00000179421.1 +29160 chr17 HAVANA gene 28275986 28317783 2086.0 - 0 ENSG00000265480.5 transcribed_unprocessed_pseudogene KRT18P55 1 OTTHUMG00000179422.3 pseudo_consens +29161 chr17 HAVANA gene 28319095 28328685 3034.0 + 0 ENSG00000109084.13 protein_coding TMEM97 1 OTTHUMG00000132497.5 +29162 chr17 HAVANA gene 28328325 28335489 3227.0 - 0 ENSG00000109083.13 protein_coding IFT20 1 OTTHUMG00000179412.5 +29163 chr17 HAVANA gene 28335602 28347009 3889.0 + 0 ENSG00000109079.9 protein_coding TNFAIP1 1 OTTHUMG00000132501.4 +29164 chr17 HAVANA gene 28347177 28357522 2121.0 - 0 ENSG00000004142.11 protein_coding POLDIP2 2 OTTHUMG00000132065.8 +29165 chr17 ENSEMBL gene 28360654 28360734 81.0 + 0 ENSG00000284532.1 miRNA MIR4723 3 +29166 chr17 HAVANA gene 28361601 28362859 1121.0 - 0 ENSG00000265618.1 antisense AC002094.2 2 OTTHUMG00000179413.1 +29167 chr17 HAVANA gene 28357581 28363683 4620.0 + 0 ENSG00000244045.12 protein_coding TMEM199 1 OTTHUMG00000132498.8 ncRNA_host,overlapping_locus +29168 chr17 HAVANA gene 28364268 28365244 666.0 - 0 ENSG00000274529.5 protein_coding SEBOX 2 OTTHUMG00000171160.47 overlapping_locus +29169 chr17 HAVANA gene 28364288 28368012 851.0 - 0 ENSG00000273171.1 protein_coding AC002094.3 2 OTTHUMG00000171457.3 overlapping_locus +29170 chr17 HAVANA gene 28367276 28373091 2427.0 - 0 ENSG00000109072.13 protein_coding VTN 2 OTTHUMG00000132500.6 overlapping_locus +29171 chr17 HAVANA gene 28373256 28373562 307.0 + 0 ENSG00000277450.1 sense_intronic AC002094.4 2 OTTHUMG00000189104.1 +29172 chr17 HAVANA gene 28373673 28374301 629.0 - 0 ENSG00000279532.1 TEC AC002094.5 2 OTTHUMG00000179414.1 +29173 chr17 HAVANA gene 28357647 28381697 5451.0 + 0 ENSG00000258924.4 processed_transcript AC002094.1 1 OTTHUMG00000171814.3 ncRNA_host,overlapping_locus +29174 chr17 HAVANA gene 28364356 28404049 11137.0 + 0 ENSG00000004139.13 protein_coding SARM1 1 OTTHUMG00000132499.46 overlapping_locus +29175 chr17 HAVANA gene 28405240 28406796 493.0 + 0 ENSG00000265254.1 antisense AC015917.2 2 OTTHUMG00000179305.1 +29176 chr17 HAVANA gene 28394756 28407197 7838.0 - 0 ENSG00000076351.12 protein_coding SLC46A1 1 OTTHUMG00000179415.6 +29177 chr17 HAVANA gene 28416922 28417492 357.0 + 0 ENSG00000265541.1 unprocessed_pseudogene H3F3BP2 1 OTTHUMG00000179306.1 pseudo_consens +29178 chr17 HAVANA gene 28444063 28445563 510.0 - 0 ENSG00000263870.1 unprocessed_pseudogene AC015917.1 1 OTTHUMG00000179416.1 pseudo_consens +29179 chr17 HAVANA gene 28467822 28468406 585.0 + 0 ENSG00000263266.2 processed_pseudogene RPS7P1 2 OTTHUMG00000132828.1 +29180 chr17 HAVANA gene 28473293 28497781 3226.0 + 0 ENSG00000007216.14 protein_coding SLC13A2 2 OTTHUMG00000132523.2 +29181 chr17 HAVANA gene 28506243 28538896 3637.0 + 0 ENSG00000109101.7 protein_coding FOXN1 2 OTTHUMG00000132603.3 +29182 chr17 HAVANA gene 28546707 28552668 5128.0 - 0 ENSG00000109103.11 protein_coding UNC119 2 OTTHUMG00000132606.6 overlapping_locus +29183 chr17 HAVANA gene 28553383 28571872 5990.0 - 0 ENSG00000087111.20 protein_coding PIGS 2 OTTHUMG00000132604.6 overlapping_locus +29184 chr17 HAVANA gene 28573117 28574243 298.0 + 0 ENSG00000265168.1 antisense AC005726.4 2 OTTHUMG00000179308.1 +29185 chr17 HAVANA gene 28573115 28577264 2928.0 - 0 ENSG00000109107.13 protein_coding ALDOC 1 OTTHUMG00000132605.7 overlapping_locus +29186 chr17 HAVANA gene 28577565 28599279 5472.0 - 0 ENSG00000076382.16 protein_coding SPAG5 2 OTTHUMG00000166586.26 overlapping_locus +29187 chr17 HAVANA gene 28601827 28602284 458.0 - 0 ENSG00000264608.1 sense_intronic AC005726.3 2 OTTHUMG00000179341.2 overlapping_locus +29188 chr17 HAVANA gene 28607963 28609730 1083.0 + 0 ENSG00000265287.2 antisense AC005726.5 2 OTTHUMG00000179343.2 overlapping_locus +29189 chr17 HAVANA gene 28455752 28614197 3218.0 - 0 ENSG00000258472.8 protein_coding AC005726.1 1 OTTHUMG00000171061.31 overlapping_locus +29190 chr17 HAVANA gene 28607964 28614200 4663.0 - 0 ENSG00000167524.14 protein_coding SGK494 2 OTTHUMG00000179342.30 overlapping_locus +29191 chr17 HAVANA gene 28598790 28617377 3835.0 + 0 ENSG00000227543.4 processed_transcript SPAG5-AS1 2 OTTHUMG00000132827.4 overlapping_locus +29192 chr17 HAVANA gene 28633206 28635950 1515.0 + 0 ENSG00000264044.1 antisense AC005726.2 2 OTTHUMG00000179344.1 +29193 chr17 HAVANA gene 28614440 28645454 9235.0 - 0 ENSG00000007202.14 protein_coding KIAA0100 1 OTTHUMG00000166587.6 +29194 chr17 HAVANA gene 28655557 28655983 427.0 + 0 ENSG00000240494.2 processed_pseudogene RPS12P28 1 OTTHUMG00000157763.2 pseudo_consens +29195 chr17 HAVANA gene 28648356 28662189 3332.0 - 0 ENSG00000132581.9 protein_coding SDF2 2 OTTHUMG00000132681.5 +29196 chr17 HAVANA gene 28670054 28672804 499.0 - 0 ENSG00000265205.1 antisense AC010761.3 2 OTTHUMG00000179492.1 +29197 chr17 HAVANA gene 28662091 28702684 10620.0 + 0 ENSG00000109111.14 protein_coding SUPT6H 2 OTTHUMG00000179449.6 +29198 chr17 HAVANA gene 28703197 28711854 4829.0 - 0 ENSG00000167525.13 protein_coding PROCA1 2 OTTHUMG00000132682.5 +29199 chr17 HAVANA gene 28714281 28718429 3328.0 - 0 ENSG00000109113.19 protein_coding RAB34 2 OTTHUMG00000132680.13 +29200 chr17 ENSEMBL gene 28720550 28720616 67.0 + 0 ENSG00000238423.1 snoRNA SNORD42B 3 +29201 chr17 ENSEMBL gene 28722582 28722653 72.0 + 0 ENSG00000238578.1 snoRNA SNORD4A 3 +29202 chr17 HAVANA gene 28721487 28722877 899.0 - 0 ENSG00000264577.1 antisense AC010761.1 2 OTTHUMG00000179455.1 +29203 chr17 ENSEMBL gene 28723429 28723492 64.0 + 0 ENSG00000238649.1 snoRNA SNORD42A 3 +29204 chr17 ENSEMBL gene 28723682 28723753 72.0 + 0 ENSG00000238597.1 snoRNA SNORD4B 3 +29205 chr17 HAVANA gene 28719393 28724359 2824.0 + 0 ENSG00000198242.13 protein_coding RPL23A 1 OTTHUMG00000132684.5 ncRNA_host +29206 chr17 HAVANA gene 28727258 28727739 197.0 + 0 ENSG00000267729.1 antisense AC010761.6 2 OTTHUMG00000179845.1 overlapping_locus +29207 chr17 HAVANA gene 28724348 28727935 1311.0 - 0 ENSG00000160606.10 protein_coding TLCD1 2 OTTHUMG00000132683.4 +29208 chr17 HAVANA gene 28732963 28743102 754.0 - 0 ENSG00000265073.1 antisense AC010761.2 2 OTTHUMG00000179453.33 +29209 chr17 HAVANA gene 28725897 28743455 4420.0 + 0 ENSG00000160602.13 protein_coding NEK8 1 OTTHUMG00000179454.32 overlapping_locus +29210 chr17 HAVANA gene 28745569 28747652 521.0 - 0 ENSG00000265474.1 antisense AC010761.4 2 OTTHUMG00000179457.1 +29211 chr17 HAVANA gene 28749731 28750079 287.0 - 0 ENSG00000265840.1 antisense AC010761.5 2 OTTHUMG00000179493.1 +29212 chr17 HAVANA gene 28743984 28750958 4596.0 + 0 ENSG00000076604.14 protein_coding TRAF4 1 OTTHUMG00000132677.7 +29213 chr17 HAVANA gene 28802444 28802822 379.0 + 0 ENSG00000243053.2 processed_pseudogene RPL31P58 1 OTTHUMG00000157764.2 pseudo_consens +29214 chr17 ENSEMBL gene 28834722 28834822 101.0 + 0 ENSG00000238516.1 misc_RNA RF00019 3 +29215 chr17 HAVANA gene 28848860 28849592 417.0 + 0 ENSG00000264138.1 unprocessed_pseudogene AC024267.2 2 OTTHUMG00000179496.1 +29216 chr17 HAVANA gene 28755978 28855232 5514.0 - 0 ENSG00000173065.13 protein_coding FAM222B 2 OTTHUMG00000179495.4 +29217 chr17 HAVANA gene 28854938 28861067 2318.0 + 0 ENSG00000132591.11 protein_coding ERAL1 1 OTTHUMG00000132675.4 +29218 chr17 ENSEMBL gene 28861371 28861438 68.0 + 0 ENSG00000283364.1 miRNA MIR451B 3 +29219 chr17 ENSEMBL gene 28861369 28861440 72.0 - 0 ENSG00000284565.1 miRNA MIR451A 3 +29220 chr17 ENSEMBL gene 28861533 28861618 86.0 - 0 ENSG00000283819.1 miRNA MIR144 3 +29221 chr17 ENSEMBL gene 28861655 28861730 76.0 - 0 ENSG00000284085.1 miRNA MIR4732 3 +29222 chr17 HAVANA gene 28861072 28861966 895.0 - 0 ENSG00000264066.6 lincRNA AC024267.1 2 OTTHUMG00000179497.3 ncRNA_host +29223 chr17 HAVANA gene 28892469 28893342 562.0 + 0 ENSG00000264304.1 antisense AC024267.3 2 OTTHUMG00000179512.1 +29224 chr17 HAVANA gene 28879335 28897679 3336.0 - 0 ENSG00000132589.15 protein_coding FLOT2 2 OTTHUMG00000132674.6 +29225 chr17 HAVANA gene 28897738 28899402 1264.0 + 0 ENSG00000266642.2 antisense AC024267.6 2 OTTHUMG00000179498.3 +29226 chr17 HAVANA gene 28897781 28903071 2944.0 - 0 ENSG00000167536.13 protein_coding DHRS13 2 OTTHUMG00000132678.2 +29227 chr17 HAVANA gene 28926275 28944749 996.0 + 0 ENSG00000265845.2 antisense AC024267.4 2 OTTHUMG00000179499.2 +29228 chr17 HAVANA gene 28944796 28945394 599.0 + 0 ENSG00000265908.1 antisense AC024267.5 2 OTTHUMG00000179500.1 +29229 chr17 HAVANA gene 28905250 28951771 12227.0 - 0 ENSG00000109118.13 protein_coding PHF12 2 OTTHUMG00000132676.6 +29230 chr17 HAVANA gene 28954901 29006440 5115.0 - 0 ENSG00000063015.19 protein_coding SEZ6 1 OTTHUMG00000168010.6 +29231 chr17 HAVANA gene 29009799 29011009 517.0 - 0 ENSG00000263613.1 antisense AC024619.2 2 OTTHUMG00000179546.1 +29232 chr17 HAVANA gene 29012865 29016512 556.0 + 0 ENSG00000238007.1 sense_intronic AC024619.1 2 OTTHUMG00000132826.1 overlapping_locus +29233 chr17 HAVANA gene 29021325 29021640 316.0 - 0 ENSG00000263781.3 processed_pseudogene AC024619.4 1 OTTHUMG00000179539.1 pseudo_consens +29234 chr17 HAVANA gene 28950513 29057220 4059.0 + 0 ENSG00000179761.11 protein_coding PIPOX 2 OTTHUMG00000132679.5 overlapping_locus +29235 chr17 HAVANA gene 29073521 29078857 5337.0 - 0 ENSG00000221995.5 protein_coding TIAF1 2 OTTHUMG00000163268.2 overlapping_locus +29236 chr17 HAVANA gene 29140483 29155489 323.0 + 0 ENSG00000263709.1 antisense AC024619.3 2 OTTHUMG00000179540.1 +29237 chr17 HAVANA gene 29071124 29180412 15047.0 - 0 ENSG00000196535.16 protein_coding MYO18A 1 OTTHUMG00000166360.11 overlapping_locus +29238 chr17 HAVANA gene 29197071 29197785 715.0 - 0 ENSG00000264050.1 processed_pseudogene AC005412.1 2 OTTHUMG00000179541.1 +29239 chr17 HAVANA gene 29203426 29204474 1049.0 - 0 ENSG00000178082.6 processed_pseudogene TWF1P1 1 OTTHUMG00000179542.1 pseudo_consens +29240 chr17 HAVANA gene 29246863 29254494 794.0 + 0 ENSG00000108255.7 protein_coding CRYBA1 2 OTTHUMG00000132729.2 +29241 chr17 HAVANA gene 29255836 29294118 10850.0 - 0 ENSG00000108256.8 protein_coding NUFIP2 2 OTTHUMG00000179547.2 +29242 chr17 HAVANA gene 29340482 29340822 341.0 - 0 ENSG00000239256.1 processed_pseudogene RPL35AP35 1 OTTHUMG00000157776.1 pseudo_consens +29243 chr17 ENSEMBL gene 29388560 29388683 124.0 + 0 ENSG00000222363.1 snRNA RNU4-34P 3 +29244 chr17 ENSEMBL gene 29390662 29390730 69.0 + 0 ENSG00000284162.1 miRNA MIR4523 3 +29245 chr17 HAVANA gene 29369717 29390777 762.0 - 0 ENSG00000264808.1 antisense AC068025.1 2 OTTHUMG00000179717.1 +29246 chr17 HAVANA gene 29352069 29404105 419.0 + 0 ENSG00000266111.2 lincRNA AC068025.2 2 OTTHUMG00000179549.3 ncRNA_host,overlapping_locus +29247 chr17 ENSEMBL gene 29424762 29424867 106.0 - 0 ENSG00000253064.1 snRNA RNU6-711P 3 +29248 chr17 ENSEMBL gene 29445300 29445400 101.0 - 0 ENSG00000202205.1 snRNA RNU6-1034P 3 +29249 chr17 HAVANA gene 29390464 29551904 16980.0 + 0 ENSG00000160551.11 protein_coding TAOK1 2 OTTHUMG00000179718.3 ncRNA_host,overlapping_locus +29250 chr17 HAVANA gene 29560547 29567137 3592.0 - 0 ENSG00000168792.4 protein_coding ABHD15 2 OTTHUMG00000179721.2 +29251 chr17 HAVANA gene 29569580 29570519 465.0 + 0 ENSG00000264290.1 sense_intronic AC104564.3 2 OTTHUMG00000179724.1 overlapping_locus +29252 chr17 HAVANA gene 29566052 29573157 4570.0 + 0 ENSG00000167543.15 protein_coding TP53I13 1 OTTHUMG00000179723.4 overlapping_locus +29253 chr17 HAVANA gene 29591703 29592241 278.0 - 0 ENSG00000264647.1 antisense AC104564.4 2 OTTHUMG00000179725.1 overlapping_locus +29254 chr17 HAVANA gene 29573469 29594054 5635.0 - 0 ENSG00000108262.15 protein_coding GIT1 1 OTTHUMG00000132730.5 overlapping_locus +29255 chr17 HAVANA gene 29589769 29614761 3971.0 + 0 ENSG00000198720.12 protein_coding ANKRD13B 2 OTTHUMG00000132731.7 overlapping_locus +29256 chr17 HAVANA gene 29621617 29622254 638.0 - 0 ENSG00000264007.1 sense_intronic AC104564.2 2 OTTHUMG00000179726.1 overlapping_locus +29257 chr17 HAVANA gene 29614756 29622907 4321.0 - 0 ENSG00000167549.18 protein_coding CORO6 1 OTTHUMG00000132732.4 overlapping_locus +29258 chr17 HAVANA gene 29639627 29640825 270.0 + 0 ENSG00000263370.1 antisense AC104564.1 2 OTTHUMG00000179727.1 overlapping_locus +29259 chr17 ENSEMBL gene 29641611 29641702 92.0 - 0 ENSG00000222858.1 snRNA RNU6-920P 3 +29260 chr17 HAVANA gene 29644796 29645847 1052.0 - 0 ENSG00000265625.1 sense_intronic AC104564.5 2 OTTHUMG00000179736.1 overlapping_locus +29261 chr17 HAVANA gene 29560547 29707090 187.0 + 0 ENSG00000264031.1 antisense ABHD15-AS1 2 OTTHUMG00000179722.1 overlapping_locus +29262 chr17 HAVANA gene 29716279 29716685 407.0 - 0 ENSG00000240531.1 transcribed_processed_pseudogene RPL21P123 1 OTTHUMG00000157780.1 pseudo_consens,overlapping_locus +29263 chr17 HAVANA gene 29775747 29776701 955.0 - 0 ENSG00000265713.1 transcribed_processed_pseudogene AC023389.2 1 OTTHUMG00000179737.1 pseudo_consens,overlapping_locus +29264 chr17 ENSEMBL gene 29777619 29777744 126.0 + 0 ENSG00000252657.1 snoRNA RF00156 3 +29265 chr17 HAVANA gene 29761103 29787836 576.0 + 0 ENSG00000263657.1 antisense AC023389.1 2 OTTHUMG00000179728.1 ncRNA_host +29266 chr17 HAVANA gene 29855759 29856332 574.0 + 0 ENSG00000240074.1 processed_pseudogene RPL9P30 1 OTTHUMG00000157781.1 pseudo_consens +29267 chr17 HAVANA gene 29863402 29866092 893.0 + 0 ENSG00000263477.1 antisense AC104982.1 2 OTTHUMG00000179738.1 +29268 chr17 ENSEMBL gene 29883006 29883109 104.0 + 0 ENSG00000239129.1 snoRNA RF01210 3 +29269 chr17 HAVANA gene 29625938 29930276 12608.0 - 0 ENSG00000141298.18 protein_coding SSH2 2 OTTHUMG00000132752.7 ncRNA_host,overlapping_locus +29270 chr17 HAVANA gene 29972514 29973027 514.0 + 0 ENSG00000264435.1 transcribed_processed_pseudogene AC104982.2 1 OTTHUMG00000179744.1 pseudo_consens,overlapping_locus +29271 chr17 HAVANA gene 30059054 30059147 94.0 - 0 ENSG00000267482.1 unprocessed_pseudogene AC104996.3 2 OTTHUMG00000179920.1 +29272 chr17 ENSEMBL gene 30059052 30059147 96.0 - 0 ENSG00000207011.1 misc_RNA RNY4P13 3 +29273 chr17 HAVANA gene 30059339 30065677 591.0 - 0 ENSG00000265289.1 antisense AC104996.1 2 OTTHUMG00000132753.5 +29274 chr17 HAVANA gene 30068632 30069631 1000.0 + 0 ENSG00000266876.1 transcribed_processed_pseudogene AC104996.2 1 OTTHUMG00000179745.1 pseudo_consens,overlapping_locus +29275 chr17 HAVANA gene 29929200 30108452 6928.0 + 0 ENSG00000176927.15 protein_coding EFCAB5 1 OTTHUMG00000179743.3 overlapping_locus +29276 chr17 ENSEMBL gene 30117086 30117160 75.0 - 0 ENSG00000284399.1 miRNA MIR3184 3 +29277 chr17 HAVANA gene 30117079 30117172 94.0 - 0 ENSG00000266919.3 sense_intronic AC104984.5 2 OTTHUMG00000179921.1 ncRNA_host,overlapping_locus +29278 chr17 ENSEMBL gene 30117079 30117172 94.0 + 0 ENSG00000283935.1 miRNA MIR423 3 +29279 chr17 HAVANA gene 30090366 30117497 385.0 - 0 ENSG00000265394.1 antisense AC104984.2 2 OTTHUMG00000179750.1 ncRNA_host,overlapping_locus +29280 chr17 HAVANA gene 30122429 30126118 546.0 - 0 ENSG00000265739.1 antisense AC104984.3 2 OTTHUMG00000179752.1 +29281 chr17 HAVANA gene 30144062 30144790 360.0 - 0 ENSG00000266987.1 antisense AC104984.6 2 OTTHUMG00000179923.1 +29282 chr17 HAVANA gene 30115521 30186475 4806.0 + 0 ENSG00000126653.17 protein_coding NSRP1 2 OTTHUMG00000132754.7 ncRNA_host +29283 chr17 HAVANA gene 30204318 30206468 697.0 + 0 ENSG00000264125.1 antisense AC104984.1 2 OTTHUMG00000179754.1 +29284 chr17 HAVANA gene 30194319 30236002 6983.0 - 0 ENSG00000108576.9 protein_coding SLC6A4 2 OTTHUMG00000132751.5 +29285 chr17 ENSEMBL gene 30246757 30246820 64.0 - 0 ENSG00000252112.1 snoRNA RF00154 3 +29286 chr17 HAVANA gene 30238741 30252237 224.0 + 0 ENSG00000266120.1 antisense AC104984.4 2 OTTHUMG00000179755.1 +29287 chr17 ENSEMBL gene 30288071 30288177 107.0 - 0 ENSG00000222679.1 snRNA RNU6-1267P 3 +29288 chr17 HAVANA gene 30248195 30292056 5127.0 - 0 ENSG00000108578.14 protein_coding BLMH 2 OTTHUMG00000179756.5 ncRNA_host +29289 chr17 HAVANA gene 30316333 30334059 1228.0 - 0 ENSG00000182271.12 protein_coding TMIGD1 2 OTTHUMG00000179757.1 +29290 chr17 ENSEMBL gene 30344503 30344604 102.0 - 0 ENSG00000207132.1 misc_RNA RF00019 3 +29291 chr17 ENSEMBL gene 30360463 30360566 104.0 + 0 ENSG00000201255.1 snRNA RNU6-990P 3 +29292 chr17 HAVANA gene 30378905 30469989 12532.0 + 0 ENSG00000108582.11 protein_coding CPD 2 OTTHUMG00000132797.5 +29293 chr17 HAVANA gene 30477362 30527592 9855.0 + 0 ENSG00000108587.15 protein_coding GOSR1 2 OTTHUMG00000132796.3 +29294 chr17 HAVANA gene 30529688 30542416 1229.0 + 0 ENSG00000264958.2 unprocessed_pseudogene ALOX12P1 2 OTTHUMG00000178853.2 +29295 chr17 HAVANA gene 30550493 30551189 280.0 - 0 ENSG00000263860.1 lincRNA AC011840.3 2 OTTHUMG00000178854.1 +29296 chr17 HAVANA gene 30551193 30551802 610.0 + 0 ENSG00000279431.1 TEC AC011840.5 2 OTTHUMG00000179926.1 +29297 chr17 HAVANA gene 30557732 30558502 771.0 - 0 ENSG00000266775.1 antisense AC011840.4 2 OTTHUMG00000178858.1 +29298 chr17 HAVANA gene 30553502 30563493 4442.0 + 0 ENSG00000266733.6 protein_coding TBC1D29 2 OTTHUMG00000178856.3 overlapping_locus +29299 chr17 HAVANA gene 30564057 30565576 1520.0 - 0 ENSG00000259928.1 lincRNA AC011840.2 2 OTTHUMG00000176030.1 +29300 chr17 HAVANA gene 30567700 30571748 1262.0 - 0 ENSG00000231870.4 unprocessed_pseudogene KRT17P3 2 OTTHUMG00000132805.3 +29301 chr17 HAVANA gene 30573471 30577000 1787.0 - 0 ENSG00000231421.7 processed_transcript AC011840.1 2 OTTHUMG00000132806.3 +29302 chr17 HAVANA gene 30600796 30615980 570.0 + 0 ENSG00000248121.8 transcribed_unprocessed_pseudogene SMURF2P1 2 OTTHUMG00000132798.3 overlapping_locus +29303 chr17 HAVANA gene 30617680 30617790 111.0 - 0 ENSG00000273609.1 unprocessed_pseudogene AC005562.1 2 OTTHUMG00000187907.1 +29304 chr17 HAVANA gene 30624413 30625494 1082.0 + 0 ENSG00000264943.1 processed_pseudogene SH3GL1P2 1 OTTHUMG00000178988.1 pseudo_consens,overlapping_locus +29305 chr17 HAVANA gene 30629680 30637466 5202.0 + 0 ENSG00000250462.8 transcribed_unprocessed_pseudogene LRRC37BP1 2 OTTHUMG00000132795.3 overlapping_locus +29306 chr17 HAVANA gene 30576464 30672789 6036.0 + 0 ENSG00000214719.11 processed_transcript SMURF2P1-LRRC37BP1 2 OTTHUMG00000132793.2 overlapping_locus +29307 chr17 ENSEMBL gene 30702504 30702775 272.0 - 0 ENSG00000241631.3 misc_RNA RN7SL316P 3 +29308 chr17 HAVANA gene 30724982 30725181 200.0 - 0 ENSG00000279337.1 TEC AC127024.7 2 OTTHUMG00000179000.1 +29309 chr17 HAVANA gene 30726305 30727564 460.0 - 0 ENSG00000265443.1 lincRNA AC127024.3 2 OTTHUMG00000179001.1 +29310 chr17 HAVANA gene 30729469 30731202 894.0 + 0 ENSG00000263603.1 lincRNA AC127024.2 2 OTTHUMG00000178993.2 overlapping_locus +29311 chr17 HAVANA gene 30738182 30740275 2094.0 + 0 ENSG00000280069.1 TEC AC127024.8 2 OTTHUMG00000178994.1 overlapping_locus +29312 chr17 HAVANA gene 30781493 30782221 308.0 - 0 ENSG00000265791.1 sense_intronic AC127024.4 2 OTTHUMG00000179006.1 overlapping_locus +29313 chr17 HAVANA gene 30709299 30790908 3776.0 + 0 ENSG00000264538.6 transcribed_unprocessed_pseudogene SUZ12P1 2 OTTHUMG00000178989.2 overlapping_locus +29314 chr17 HAVANA gene 30792372 30792833 462.0 + 0 ENSG00000266490.1 lincRNA AC127024.5 2 OTTHUMG00000179007.1 +29315 chr17 HAVANA gene 30803654 30804077 424.0 + 0 ENSG00000276250.1 antisense AC127024.6 2 OTTHUMG00000186638.1 +29316 chr17 HAVANA gene 30769388 30824776 4472.0 - 0 ENSG00000176390.11 protein_coding CRLF3 1 OTTHUMG00000179005.1 overlapping_locus +29317 chr17 HAVANA gene 30830901 30831318 418.0 + 0 ENSG00000242439.1 processed_pseudogene AC127024.1 1 OTTHUMG00000157806.1 pseudo_consens +29318 chr17 ENSEMBL gene 30861843 30861938 96.0 + 0 ENSG00000212190.1 snRNA RNU6-298P 3 +29319 chr17 HAVANA gene 30834325 30863028 638.0 - 0 ENSG00000265334.1 antisense AC130324.2 2 OTTHUMG00000179023.1 +29320 chr17 HAVANA gene 30863921 30864940 831.0 - 0 ENSG00000263531.1 antisense AC130324.1 2 OTTHUMG00000179024.1 +29321 chr17 HAVANA gene 30831970 30895869 7075.0 + 0 ENSG00000176208.8 protein_coding ATAD5 2 OTTHUMG00000132794.3 ncRNA_host +29322 chr17 HAVANA gene 30899110 30899651 542.0 + 0 ENSG00000275185.1 antisense AC130324.3 2 OTTHUMG00000186639.1 +29323 chr17 HAVANA gene 30897336 30906820 3224.0 - 0 ENSG00000172171.10 protein_coding TEFM 2 OTTHUMG00000179029.1 +29324 chr17 HAVANA gene 30956280 30956961 545.0 - 0 ENSG00000230113.1 antisense AC138207.1 2 OTTHUMG00000132799.1 +29325 chr17 HAVANA gene 30906344 30959322 3750.0 + 0 ENSG00000184060.10 protein_coding ADAP2 1 OTTHUMG00000132868.4 +29326 chr17 ENSEMBL gene 30959564 30959850 287.0 + 0 ENSG00000266274.2 misc_RNA RN7SL138P 3 +29327 chr17 HAVANA gene 30964935 30965500 409.0 - 0 ENSG00000265743.1 lincRNA AC138207.5 2 OTTHUMG00000179049.1 +29328 chr17 HAVANA gene 30971652 30973312 1661.0 + 0 ENSG00000264456.1 sense_intronic AC138207.4 2 OTTHUMG00000179051.1 overlapping_locus +29329 chr17 HAVANA gene 30975387 30975954 568.0 + 0 ENSG00000264743.2 processed_pseudogene DPRXP4 1 OTTHUMG00000179181.2 pseudo_consens,overlapping_locus +29330 chr17 HAVANA gene 30978610 30980250 668.0 - 0 ENSG00000266340.1 antisense AC138207.7 2 OTTHUMG00000179052.1 +29331 chr17 HAVANA gene 30968785 30999911 3580.0 + 0 ENSG00000181481.13 protein_coding RNF135 1 OTTHUMG00000132867.6 overlapping_locus +29332 chr17 HAVANA gene 31008154 31008319 166.0 - 0 ENSG00000264148.1 processed_pseudogene AC138207.3 2 OTTHUMG00000179053.1 +29333 chr17 HAVANA gene 31038575 31059121 2513.0 - 0 ENSG00000265798.6 transcribed_unprocessed_pseudogene AC138207.6 2 OTTHUMG00000179054.2 +29334 chr17 HAVANA gene 31008497 31093127 2147.0 + 0 ENSG00000266865.6 transcribed_unprocessed_pseudogene AC138207.8 2 OTTHUMG00000179182.2 +29335 chr17 ENSEMBL gene 31094350 31094425 76.0 - 0 ENSG00000265444.1 miRNA MIR4733 3 +29336 chr17 HAVANA gene 31090787 31095450 492.0 - 0 ENSG00000264107.1 antisense AC138207.2 2 OTTHUMG00000179055.1 ncRNA_host +29337 chr17 HAVANA gene 31133182 31138518 2780.0 + 0 ENSG00000266371.1 sense_intronic AC079915.1 2 OTTHUMG00000179255.1 overlapping_locus +29338 chr17 HAVANA gene 31272013 31297539 3837.0 - 0 ENSG00000126861.4 protein_coding OMG 1 OTTHUMG00000132870.2 +29339 chr17 HAVANA gene 31303766 31314112 2072.0 - 0 ENSG00000185862.6 protein_coding EVI2B 2 OTTHUMG00000132869.2 overlapping_locus +29340 chr17 HAVANA gene 31305213 31318831 1242.0 - 0 ENSG00000265118.5 protein_coding AC134669.1 1 OTTHUMG00000179278.2 overlapping_locus +29341 chr17 HAVANA gene 31317560 31321884 2071.0 - 0 ENSG00000126860.11 protein_coding EVI2A 2 OTTHUMG00000159306.3 overlapping_locus +29342 chr17 HAVANA gene 31345519 31346190 672.0 + 0 ENSG00000263535.2 processed_pseudogene AK4P1 2 OTTHUMG00000179256.2 +29343 chr17 HAVANA gene 31094927 31382116 27130.0 + 0 ENSG00000196712.17 protein_coding NF1 2 OTTHUMG00000132871.9 overlapping_locus +29344 chr17 ENSEMBL gene 31465543 31465832 290.0 + 0 ENSG00000239595.3 misc_RNA RN7SL79P 3 +29345 chr17 ENSEMBL gene 31518432 31518729 298.0 + 0 ENSG00000264862.2 misc_RNA RN7SL45P 3 +29346 chr17 HAVANA gene 31533171 31533938 768.0 - 0 ENSG00000278977.1 TEC AC003101.3 2 OTTHUMG00000179280.1 +29347 chr17 ENSEMBL gene 31534883 31534971 89.0 + 0 ENSG00000284424.1 miRNA MIR4724 3 +29348 chr17 HAVANA gene 31391624 31538217 15383.0 + 0 ENSG00000131242.17 protein_coding RAB11FIP4 1 OTTHUMG00000132787.6 ncRNA_host +29349 chr17 ENSEMBL gene 31559996 31560083 88.0 + 0 ENSG00000207614.1 miRNA MIR193A 3 +29350 chr17 HAVANA gene 31560132 31560573 442.0 + 0 ENSG00000278546.1 lincRNA AC003101.2 2 OTTHUMG00000186640.1 +29351 chr17 ENSEMBL gene 31563768 31563894 127.0 - 0 ENSG00000221038.1 snRNA RNU6ATAC7P 3 +29352 chr17 ENSEMBL gene 31575269 31575358 90.0 + 0 ENSG00000265976.1 miRNA MIR4725 3 +29353 chr17 ENSEMBL gene 31575411 31575521 111.0 + 0 ENSG00000283978.1 miRNA MIR365B 3 +29354 chr17 HAVANA gene 31571142 31575659 459.0 + 0 ENSG00000228768.3 lincRNA AC003101.1 2 OTTHUMG00000132786.1 ncRNA_host +29355 chr17 HAVANA gene 31583162 31637543 568.0 + 0 ENSG00000266877.1 lincRNA AC007923.4 2 OTTHUMG00000179148.2 +29356 chr17 HAVANA gene 31709568 31709859 292.0 + 0 ENSG00000266448.1 processed_pseudogene AC007923.3 2 OTTHUMG00000179288.1 +29357 chr17 ENSEMBL gene 31713753 31713853 101.0 + 0 ENSG00000202026.1 snRNA RNU6-1134P 3 +29358 chr17 HAVANA gene 31759795 31761385 1591.0 + 0 ENSG00000265863.1 processed_pseudogene AC007923.2 1 OTTHUMG00000179289.1 pseudo_consens +29359 chr17 HAVANA gene 31762440 31769048 505.0 + 0 ENSG00000263567.1 lincRNA AC007923.1 2 OTTHUMG00000179290.1 +29360 chr17 HAVANA gene 31830731 31831750 397.0 + 0 ENSG00000265046.1 lincRNA AC004253.2 2 OTTHUMG00000179321.1 +29361 chr17 HAVANA gene 31851864 31859337 1432.0 - 0 ENSG00000172301.10 protein_coding COPRS 2 OTTHUMG00000132812.3 +29362 chr17 HAVANA gene 31873926 31886666 488.0 + 0 ENSG00000263990.1 lincRNA AC004253.1 2 OTTHUMG00000179322.1 +29363 chr17 HAVANA gene 31860899 31901765 6450.0 - 0 ENSG00000108651.9 protein_coding UTP6 1 OTTHUMG00000132815.4 +29364 chr17 ENSEMBL gene 31963805 31963933 129.0 - 0 ENSG00000253058.1 rRNA_pseudogene RNA5SP437 3 +29365 chr17 HAVANA gene 31937018 32001045 6547.0 + 0 ENSG00000178691.10 protein_coding SUZ12 2 OTTHUMG00000132813.2 +29366 chr17 HAVANA gene 32003110 32006688 299.0 - 0 ENSG00000264300.1 transcribed_processed_pseudogene AC090616.3 2 OTTHUMG00000179323.1 +29367 chr17 HAVANA gene 32024469 32024583 115.0 - 0 ENSG00000264497.1 processed_pseudogene AC090616.4 1 OTTHUMG00000179462.1 pseudo_consens +29368 chr17 HAVANA gene 32039974 32042828 2855.0 + 0 ENSG00000266777.1 transcribed_processed_pseudogene SH3GL1P1 1 OTTHUMG00000179459.1 pseudo_consens,overlapping_locus +29369 chr17 HAVANA gene 32051030 32053208 2179.0 + 0 ENSG00000278867.1 TEC AC090616.6 2 OTTHUMG00000179458.1 overlapping_locus +29370 chr17 HAVANA gene 32007872 32053504 6281.0 + 0 ENSG00000185158.12 protein_coding LRRC37B 1 OTTHUMG00000132785.3 overlapping_locus +29371 chr17 HAVANA gene 32088160 32094933 299.0 - 0 ENSG00000266379.6 transcribed_unprocessed_pseudogene AC090616.5 2 OTTHUMG00000179561.2 +29372 chr17 HAVANA gene 32083179 32097065 507.0 + 0 ENSG00000264164.1 transcribed_processed_pseudogene AC090616.2 2 OTTHUMG00000179560.1 +29373 chr17 HAVANA gene 32111562 32112590 1029.0 - 0 ENSG00000265574.1 processed_pseudogene WDR45BP1 1 OTTHUMG00000179563.1 pseudo_consens,overlapping_locus +29374 chr17 HAVANA gene 32106330 32114125 447.0 - 0 ENSG00000263369.6 transcribed_unprocessed_pseudogene AC090616.1 1 OTTHUMG00000179562.2 pseudo_consens,overlapping_locus +29375 chr17 HAVANA gene 32127595 32128454 860.0 + 0 ENSG00000277511.1 lincRNA AC116407.2 2 OTTHUMG00000186641.1 +29376 chr17 HAVANA gene 32141226 32143135 1599.0 - 0 ENSG00000214708.4 antisense AC116407.1 2 OTTHUMG00000132778.2 orphan +29377 chr17 HAVANA gene 32150433 32151504 949.0 - 0 ENSG00000265293.2 processed_pseudogene ARGFXP2 2 OTTHUMG00000179565.2 +29378 chr17 HAVANA gene 32159311 32160371 1061.0 + 0 ENSG00000280033.1 TEC AC116407.4 2 OTTHUMG00000179566.1 overlapping_locus +29379 chr17 HAVANA gene 32178946 32180074 1129.0 - 0 ENSG00000280020.1 TEC AC116407.3 2 OTTHUMG00000179567.1 +29380 chr17 HAVANA gene 32227890 32228108 219.0 - 0 ENSG00000266282.1 processed_pseudogene UBL5P2 1 OTTHUMG00000179584.1 pseudo_consens +29381 chr17 HAVANA gene 32142454 32253374 6372.0 + 0 ENSG00000126858.17 protein_coding RHOT1 2 OTTHUMG00000179564.5 overlapping_locus +29382 chr17 HAVANA gene 32280387 32280953 326.0 - 0 ENSG00000263674.1 antisense AC026620.1 2 OTTHUMG00000179569.1 +29383 chr17 HAVANA gene 32266176 32324661 5404.0 + 0 ENSG00000141314.12 protein_coding RHBDL3 1 OTTHUMG00000179568.3 overlapping_locus +29384 chr17 HAVANA gene 32328441 32329395 271.0 + 0 ENSG00000265139.1 lincRNA AC005899.3 2 OTTHUMG00000179571.1 overlapping_locus +29385 chr17 HAVANA gene 32343528 32344124 597.0 - 0 ENSG00000263749.2 unprocessed_pseudogene OOSP1P2 2 OTTHUMG00000179586.2 overlapping_locus +29386 chr17 HAVANA gene 32324565 32350023 5740.0 - 0 ENSG00000108666.9 protein_coding C17orf75 1 OTTHUMG00000179585.3 overlapping_locus +29387 chr17 ENSEMBL gene 32350109 32350202 94.0 + 0 ENSG00000283774.1 miRNA MIR632 3 +29388 chr17 HAVANA gene 32324431 32360700 561.0 + 0 ENSG00000265794.5 processed_transcript AC005899.4 2 OTTHUMG00000179570.1 ncRNA_host,overlapping_locus +29389 chr17 HAVANA gene 32350117 32381886 15834.0 + 0 ENSG00000010244.18 protein_coding ZNF207 1 OTTHUMG00000132810.4 overlapping_locus +29390 chr17 HAVANA gene 32408013 32408309 297.0 + 0 ENSG00000274341.1 lincRNA AC005899.6 2 OTTHUMG00000186642.1 +29391 chr17 HAVANA gene 32410159 32410746 588.0 + 0 ENSG00000278668.1 lincRNA AC005899.7 2 OTTHUMG00000186643.1 +29392 chr17 HAVANA gene 32411217 32412420 552.0 + 0 ENSG00000266385.1 lincRNA AC005899.5 2 OTTHUMG00000179587.1 +29393 chr17 HAVANA gene 32430967 32432841 563.0 + 0 ENSG00000264083.1 lincRNA AC005899.1 2 OTTHUMG00000179589.1 +29394 chr17 HAVANA gene 32434939 32435028 90.0 - 0 ENSG00000264373.1 processed_pseudogene AC005899.2 1 OTTHUMG00000179590.1 pseudo_consens +29395 chr17 HAVANA gene 32423971 32446038 3449.0 - 0 ENSG00000279762.3 antisense AC005899.8 2 OTTHUMG00000189117.2 +29396 chr17 ENSEMBL gene 32463374 32463482 109.0 - 0 ENSG00000202100.1 misc_RNA RF00019 3 +29397 chr17 HAVANA gene 32444261 32483318 7200.0 + 0 ENSG00000108671.10 protein_coding PSMD11 1 OTTHUMG00000132811.6 +29398 chr17 HAVANA gene 32486619 32491256 4325.0 + 0 ENSG00000176749.8 protein_coding CDK5R1 2 OTTHUMG00000132814.2 +29399 chr17 HAVANA gene 32495536 32500910 4060.0 + 0 ENSG00000266718.2 antisense AC079336.5 2 OTTHUMG00000179595.2 +29400 chr17 HAVANA gene 32504567 32505644 1078.0 - 0 ENSG00000280245.1 TEC AC079336.7 2 OTTHUMG00000179637.1 overlapping_locus +29401 chr17 HAVANA gene 32518322 32518934 613.0 - 0 ENSG00000279781.1 TEC AC079336.6 2 OTTHUMG00000179640.1 overlapping_locus +29402 chr17 HAVANA gene 32512869 32519350 420.0 - 0 ENSG00000263717.1 sense_intronic AC079336.1 2 OTTHUMG00000179639.1 overlapping_locus +29403 chr17 HAVANA gene 32509954 32523424 927.0 - 0 ENSG00000265222.1 sense_intronic AC079336.2 2 OTTHUMG00000179638.1 overlapping_locus +29404 chr17 HAVANA gene 32529008 32530049 475.0 - 0 ENSG00000265337.1 sense_intronic AC079336.3 2 OTTHUMG00000179641.1 overlapping_locus +29405 chr17 HAVANA gene 32518953 32531492 408.0 + 0 ENSG00000266599.1 antisense AC079336.4 2 OTTHUMG00000179596.1 +29406 chr17 HAVANA gene 32627739 32686484 373.0 + 0 ENSG00000264458.1 antisense AC025211.1 2 OTTHUMG00000179598.1 +29407 chr17 ENSEMBL gene 32830219 32830329 111.0 - 0 ENSG00000201178.1 misc_RNA RF00019 3 +29408 chr17 HAVANA gene 32492522 32877177 8188.0 - 0 ENSG00000176658.16 protein_coding MYO1D 1 OTTHUMG00000179636.2 ncRNA_host,overlapping_locus +29409 chr17 HAVANA gene 32876759 32878637 591.0 + 0 ENSG00000226377.1 antisense AC084809.1 2 OTTHUMG00000132777.1 +29410 chr17 HAVANA gene 32905662 32906584 512.0 + 0 ENSG00000236377.1 lincRNA AC084809.2 2 OTTHUMG00000132776.1 +29411 chr17 HAVANA gene 32927910 32945106 5187.0 + 0 ENSG00000006042.11 protein_coding TMEM98 2 OTTHUMG00000132882.4 +29412 chr17 HAVANA gene 32970376 32997877 1230.0 + 0 ENSG00000141316.12 protein_coding SPACA3 1 OTTHUMG00000132886.3 +29413 chr17 HAVANA gene 33052107 33052867 427.0 - 0 ENSG00000264598.1 sense_intronic AC003687.1 2 OTTHUMG00000179660.1 overlapping_locus +29414 chr17 HAVANA gene 33099969 33100319 351.0 - 0 ENSG00000280349.1 TEC AC008133.2 2 OTTHUMG00000179661.1 overlapping_locus +29415 chr17 HAVANA gene 33111858 33131743 557.0 + 0 ENSG00000266535.1 antisense AC008133.1 2 OTTHUMG00000179662.1 +29416 chr17 HAVANA gene 33529787 33533760 632.0 - 0 ENSG00000265544.1 sense_intronic AA06 2 OTTHUMG00000179663.1 overlapping_locus +29417 chr17 HAVANA gene 33534110 33541339 563.0 + 0 ENSG00000265697.1 antisense AC011824.3 2 OTTHUMG00000179664.1 +29418 chr17 HAVANA gene 33565764 33624122 1324.0 + 0 ENSG00000265125.5 antisense AC011824.2 2 OTTHUMG00000179665.1 +29419 chr17 HAVANA gene 33627027 33635057 561.0 + 0 ENSG00000265115.1 antisense AC011824.1 2 OTTHUMG00000179666.1 +29420 chr17 HAVANA gene 33680577 33680883 307.0 + 0 ENSG00000264643.1 lincRNA AC024614.1 2 OTTHUMG00000179667.1 +29421 chr17 HAVANA gene 33688803 33689174 372.0 + 0 ENSG00000265689.1 lincRNA AC024614.2 2 OTTHUMG00000179668.1 +29422 chr17 HAVANA gene 33692229 33692484 256.0 + 0 ENSG00000283381.1 unprocessed_pseudogene AC024614.3 2 OTTHUMG00000191798.1 +29423 chr17 HAVANA gene 33791838 33816761 2396.0 - 0 ENSG00000283417.1 lincRNA AC024614.4 2 OTTHUMG00000191696.1 +29424 chr17 HAVANA gene 33976531 33980851 323.0 + 0 ENSG00000263435.1 antisense AC024610.1 2 OTTHUMG00000179670.1 +29425 chr17 HAVANA gene 34000789 34006772 5984.0 - 0 ENSG00000279674.1 TEC AC123769.1 2 OTTHUMG00000179671.1 overlapping_locus +29426 chr17 HAVANA gene 34036681 34039872 3192.0 - 0 ENSG00000226049.3 processed_pseudogene TLK2P1 1 OTTHUMG00000166422.1 pseudo_consens,overlapping_locus +29427 chr17 HAVANA gene 33827728 34079100 7005.0 - 0 ENSG00000279668.2 lincRNA AC024610.2 2 OTTHUMG00000191697.1 overlapping_locus +29428 chr17 HAVANA gene 34080882 34082224 299.0 - 0 ENSG00000263485.1 sense_intronic AC004147.1 2 OTTHUMG00000179673.1 overlapping_locus +29429 chr17 HAVANA gene 34118347 34118882 536.0 - 0 ENSG00000265775.1 sense_intronic AC004147.5 2 OTTHUMG00000179674.1 overlapping_locus +29430 chr17 ENSEMBL gene 34120056 34120167 112.0 - 0 ENSG00000252370.1 rRNA_pseudogene RNA5SP438 3 +29431 chr17 HAVANA gene 34142947 34147047 375.0 + 0 ENSG00000264791.1 antisense AC004147.3 2 OTTHUMG00000179675.1 +29432 chr17 HAVANA gene 33935437 34156000 1844.0 - 0 ENSG00000265356.2 processed_transcript AC004147.4 2 OTTHUMG00000191698.1 overlapping_locus +29433 chr17 HAVANA gene 34155566 34165679 3753.0 + 0 ENSG00000263571.2 lincRNA AC004147.2 2 OTTHUMG00000179676.2 +29434 chr17 HAVANA gene 33013087 34174964 5597.0 - 0 ENSG00000108684.14 protein_coding ASIC2 2 OTTHUMG00000132885.4 overlapping_locus +29435 chr17 HAVANA gene 34176538 34178166 1629.0 + 0 ENSG00000264990.1 lincRNA AC005549.1 2 OTTHUMG00000179677.1 +29436 chr17 HAVANA gene 34169372 34195937 1284.0 - 0 ENSG00000261156.6 lincRNA LINC01989 2 OTTHUMG00000176032.2 overlapping_locus +29437 chr17 HAVANA gene 34255218 34257203 1986.0 + 0 ENSG00000108691.9 protein_coding CCL2 2 OTTHUMG00000132887.3 +29438 chr17 HAVANA gene 34270221 34272242 863.0 + 0 ENSG00000108688.11 protein_coding CCL7 2 OTTHUMG00000132889.2 +29439 chr17 HAVANA gene 34285668 34288334 1079.0 + 0 ENSG00000172156.3 protein_coding CCL11 2 OTTHUMG00000132884.2 +29440 chr17 HAVANA gene 34319036 34321402 1261.0 + 0 ENSG00000108700.4 protein_coding CCL8 2 OTTHUMG00000132883.2 +29441 chr17 HAVANA gene 34331862 34332228 367.0 - 0 ENSG00000265614.1 processed_pseudogene AC011193.2 1 OTTHUMG00000179766.1 pseudo_consens +29442 chr17 HAVANA gene 34356452 34358610 851.0 + 0 ENSG00000181374.7 protein_coding CCL13 1 OTTHUMG00000132890.2 +29443 chr17 HAVANA gene 34360328 34363231 592.0 - 0 ENSG00000108702.3 protein_coding CCL1 2 OTTHUMG00000132888.2 +29444 chr17 HAVANA gene 34479312 34479957 350.0 + 0 ENSG00000225582.1 lincRNA AC011193.1 2 OTTHUMG00000132738.1 +29445 chr17 HAVANA gene 34574123 34579369 3997.0 - 0 ENSG00000197322.3 bidirectional_promoter_lncRNA C17orf102 2 OTTHUMG00000156883.1 +29446 chr17 HAVANA gene 34614409 34614809 401.0 + 0 ENSG00000278860.1 TEC AC005691.1 2 OTTHUMG00000179767.1 overlapping_locus +29447 chr17 HAVANA gene 34579487 34639318 6115.0 + 0 ENSG00000181291.7 protein_coding TMEM132E 2 OTTHUMG00000132927.4 overlapping_locus +29448 chr17 HAVANA gene 34725509 34726170 662.0 - 0 ENSG00000264174.1 lincRNA AC005552.1 2 OTTHUMG00000179768.1 +29449 chr17 HAVANA gene 34837871 34859046 469.0 - 0 ENSG00000264622.1 lincRNA AC022903.1 2 OTTHUMG00000179769.1 +29450 chr17 HAVANA gene 34937306 34938604 972.0 + 0 ENSG00000285559.1 antisense AC022903.2 2 OTTHUMG00000193037.1 +29451 chr17 HAVANA gene 34961530 34963775 2246.0 + 0 ENSG00000198783.5 protein_coding ZNF830 2 OTTHUMG00000179771.1 +29452 chr17 HAVANA gene 34927859 34981078 4334.0 - 0 ENSG00000132141.13 protein_coding CCT6B 2 OTTHUMG00000179770.2 +29453 chr17 HAVANA gene 34980494 35009743 12919.0 + 0 ENSG00000005156.11 protein_coding LIG3 1 OTTHUMG00000128519.6 +29454 chr17 HAVANA gene 35018660 35018991 332.0 + 0 ENSG00000273687.1 antisense AC004223.3 2 OTTHUMG00000186644.1 +29455 chr17 HAVANA gene 35073831 35074374 544.0 - 0 ENSG00000267457.1 lincRNA AC004223.2 2 OTTHUMG00000179828.1 overlapping_locus +29456 chr17 HAVANA gene 35076737 35077007 271.0 + 0 ENSG00000243423.1 processed_pseudogene AC004223.1 1 OTTHUMG00000157809.1 pseudo_consens +29457 chr17 HAVANA gene 35005990 35089319 8512.0 - 0 ENSG00000092871.16 protein_coding RFFL 1 OTTHUMG00000132933.3 overlapping_locus +29458 chr17 ENSEMBL gene 35093909 35093973 65.0 + 0 ENSG00000253084.3 snRNA RNU6-840P 3 +29459 chr17 ENSEMBL gene 35097560 35097657 98.0 - 0 ENSG00000252328.1 misc_RNA RF00006 3 +29460 chr17 HAVANA gene 35011349 35121493 2002.0 - 0 ENSG00000267618.5 protein_coding RAD51L3-RFFL 2 OTTHUMG00000179827.5 ncRNA_host,overlapping_locus +29461 chr17 HAVANA gene 35092208 35121522 11304.0 - 0 ENSG00000185379.20 protein_coding RAD51D 2 OTTHUMG00000132930.5 ncRNA_host,overlapping_locus +29462 chr17 HAVANA gene 35121579 35130732 1388.0 + 0 ENSG00000073598.5 protein_coding FNDC8 2 OTTHUMG00000132932.2 +29463 chr17 HAVANA gene 35128753 35142315 5463.0 - 0 ENSG00000073536.17 protein_coding NLE1 2 OTTHUMG00000132928.3 +29464 chr17 HAVANA gene 35164243 35167012 475.0 - 0 ENSG00000267782.1 antisense AC022916.4 2 OTTHUMG00000179854.1 +29465 chr17 HAVANA gene 35147817 35189345 5679.0 + 0 ENSG00000141161.11 protein_coding UNC45B 2 OTTHUMG00000132931.3 overlapping_locus +29466 chr17 HAVANA gene 35188522 35191343 559.0 + 0 ENSG00000266981.1 processed_transcript AC022916.2 2 OTTHUMG00000179855.1 overlapping_locus +29467 chr17 HAVANA gene 35190961 35191702 742.0 + 0 ENSG00000267744.1 transcribed_processed_pseudogene AC022916.3 1 OTTHUMG00000179856.1 pseudo_consens,overlapping_locus +29468 chr17 HAVANA gene 35192520 35194523 2004.0 - 0 ENSG00000164729.7 protein_coding SLC35G3 2 OTTHUMG00000132929.2 retrogene +29469 chr17 HAVANA gene 35231450 35242963 2814.0 - 0 ENSG00000266947.1 antisense AC022916.1 2 OTTHUMG00000179857.2 +29470 chr17 HAVANA gene 35243036 35273655 10709.0 + 0 ENSG00000166750.9 protein_coding SLFN5 1 OTTHUMG00000179858.2 +29471 chr17 HAVANA gene 35313502 35324900 714.0 + 0 ENSG00000267364.1 lincRNA AC022706.1 2 OTTHUMG00000179876.1 +29472 chr17 HAVANA gene 35344231 35344564 334.0 + 0 ENSG00000267271.1 processed_pseudogene AC060766.2 1 OTTHUMG00000179877.1 pseudo_consens +29473 chr17 HAVANA gene 35350305 35373701 5982.0 - 0 ENSG00000172716.16 protein_coding SLFN11 2 OTTHUMG00000132948.3 +29474 chr17 HAVANA gene 35377416 35377678 263.0 - 0 ENSG00000267315.1 processed_pseudogene AC060766.3 1 OTTHUMG00000179886.1 pseudo_consens +29475 chr17 HAVANA gene 35400878 35403006 394.0 - 0 ENSG00000267711.1 lincRNA AC060766.6 2 OTTHUMG00000179878.1 +29476 chr17 HAVANA gene 35403837 35404373 537.0 - 0 ENSG00000267547.1 lincRNA AC060766.4 2 OTTHUMG00000179879.1 +29477 chr17 HAVANA gene 35406948 35407818 871.0 - 0 ENSG00000267648.1 transcribed_processed_pseudogene AC060766.5 1 OTTHUMG00000179880.2 pseudo_consens,overlapping_locus +29478 chr17 HAVANA gene 35406684 35409768 1212.0 - 0 ENSG00000267745.1 processed_transcript AC060766.7 2 OTTHUMG00000179887.1 overlapping_locus +29479 chr17 HAVANA gene 35409602 35410228 627.0 - 0 ENSG00000267102.1 transcribed_processed_pseudogene AC060766.1 1 OTTHUMG00000179888.1 pseudo_consens,overlapping_locus +29480 chr17 HAVANA gene 35411060 35433283 3560.0 - 0 ENSG00000172123.12 protein_coding SLFN12 1 OTTHUMG00000132952.3 +29481 chr17 HAVANA gene 35435096 35448837 9329.0 - 0 ENSG00000154760.13 protein_coding SLFN13 2 OTTHUMG00000165108.3 +29482 chr17 HAVANA gene 35459481 35460550 1070.0 - 0 ENSG00000267312.1 processed_pseudogene AC015911.4 1 OTTHUMG00000179898.1 pseudo_consens +29483 chr17 HAVANA gene 35470069 35470628 560.0 - 0 ENSG00000267554.1 processed_pseudogene AC015911.8 1 OTTHUMG00000179900.1 pseudo_consens,overlapping_locus +29484 chr17 HAVANA gene 35477994 35478444 451.0 + 0 ENSG00000267349.1 antisense AC015911.5 2 OTTHUMG00000179901.1 +29485 chr17 HAVANA gene 35490009 35491238 1230.0 + 0 ENSG00000267046.1 processed_pseudogene E2F3P1 1 OTTHUMG00000179902.1 pseudo_consens +29486 chr17 HAVANA gene 35498218 35499175 958.0 + 0 ENSG00000267369.1 processed_pseudogene AC015911.7 1 OTTHUMG00000179903.1 pseudo_consens +29487 chr17 HAVANA gene 35499690 35510270 849.0 - 0 ENSG00000267074.1 sense_intronic AC015911.3 2 OTTHUMG00000179904.1 overlapping_locus +29488 chr17 HAVANA gene 35514766 35515186 421.0 - 0 ENSG00000255987.1 processed_pseudogene TOMM20P2 1 OTTHUMG00000168389.1 pseudo_consens,overlapping_locus +29489 chr17 HAVANA gene 35464249 35537861 4811.0 - 0 ENSG00000205045.8 protein_coding SLFN12L 2 OTTHUMG00000167707.2 overlapping_locus +29490 chr17 HAVANA gene 35540039 35540797 396.0 - 0 ENSG00000267035.1 lincRNA AC015911.2 2 OTTHUMG00000179911.1 +29491 chr17 HAVANA gene 35553205 35554767 457.0 + 0 ENSG00000267359.1 antisense AC015911.6 2 OTTHUMG00000179913.1 +29492 chr17 HAVANA gene 35548125 35558098 2889.0 - 0 ENSG00000236320.3 protein_coding SLFN14 2 OTTHUMG00000179912.1 +29493 chr17 HAVANA gene 35561539 35562077 185.0 - 0 ENSG00000267625.1 lincRNA AC015911.9 2 OTTHUMG00000179914.1 +29494 chr17 HAVANA gene 35566517 35566672 156.0 + 0 ENSG00000242660.1 processed_pseudogene AC015911.1 1 OTTHUMG00000157810.1 pseudo_consens +29495 chr17 ENSEMBL gene 35573657 35573753 97.0 + 0 ENSG00000207297.1 snoRNA SNORD7 3 +29496 chr17 HAVANA gene 35568109 35574843 1504.0 + 0 ENSG00000267321.2 lincRNA LINC02001 2 OTTHUMG00000179915.2 ncRNA_host +29497 chr17 HAVANA gene 35574795 35578863 2861.0 - 0 ENSG00000108733.9 protein_coding PEX12 2 OTTHUMG00000132951.3 +29498 chr17 HAVANA gene 35596904 35597128 225.0 - 0 ENSG00000267592.1 processed_pseudogene AC004134.1 1 OTTHUMG00000179970.1 pseudo_consens +29499 chr17 HAVANA gene 35578046 35726409 7587.0 + 0 ENSG00000006125.17 protein_coding AP2B1 1 OTTHUMG00000179924.4 overlapping_locus +29500 chr17 HAVANA gene 35731649 35743521 3502.0 + 0 ENSG00000270885.1 protein_coding RASL10B 2 OTTHUMG00000188385.1 +29501 chr17 HAVANA gene 35744511 35752878 3014.0 - 0 ENSG00000270765.5 protein_coding GAS2L2 2 OTTHUMG00000188386.1 +29502 chr17 HAVANA gene 35757199 35758325 480.0 - 0 ENSG00000271392.1 sense_intronic AC006237.1 2 OTTHUMG00000188388.1 +29503 chr17 HAVANA gene 35760897 35765079 1063.0 + 0 ENSG00000270806.1 protein_coding C17orf50 2 OTTHUMG00000188389.1 +29504 chr17 HAVANA gene 35756249 35795707 2858.0 - 0 ENSG00000271447.5 protein_coding MMP28 2 OTTHUMG00000188387.2 +29505 chr17 HAVANA gene 35808489 35808897 409.0 - 0 ENSG00000270829.1 lincRNA AC015849.2 2 OTTHUMG00000188390.1 +29506 chr17 HAVANA gene 35818399 35823713 421.0 + 0 ENSG00000270894.1 sense_overlapping AC015849.4 2 OTTHUMG00000188392.1 +29507 chr17 HAVANA gene 35816717 35830293 488.0 - 0 ENSG00000270871.1 antisense AC015849.3 2 OTTHUMG00000188391.1 +29508 chr17 HAVANA gene 35861093 35861566 474.0 - 0 ENSG00000271268.1 processed_pseudogene AC015849.6 1 OTTHUMG00000188394.1 pseudo_consens +29509 chr17 HAVANA gene 35713791 35864615 5909.0 + 0 ENSG00000270647.5 protein_coding TAF15 2 OTTHUMG00000188384.2 +29510 chr17 HAVANA gene 35854946 35868891 2930.0 - 0 ENSG00000270379.5 protein_coding HEATR9 2 OTTHUMG00000188393.3 +29511 chr17 HAVANA gene 35871491 35880793 1512.0 - 0 ENSG00000271503.5 protein_coding CCL5 2 OTTHUMG00000188396.1 +29512 chr17 HAVANA gene 35868967 35885863 755.0 + 0 ENSG00000270240.2 antisense AC015849.1 2 OTTHUMG00000188395.1 +29513 chr17 ENSEMBL gene 35889558 35889804 247.0 + 0 ENSG00000271394.1 misc_RNA RF00100 3 +29514 chr17 HAVANA gene 35893707 35911023 5749.0 - 0 ENSG00000270977.1 lincRNA AC015849.5 2 OTTHUMG00000188397.1 +29515 chr17 HAVANA gene 35912635 35918010 5376.0 - 0 ENSG00000271013.1 processed_pseudogene LRRC37A9P 2 OTTHUMG00000188398.1 +29516 chr17 HAVANA gene 35918066 35930773 1975.0 - 0 ENSG00000278023.5 protein_coding RDM1 2 OTTHUMG00000188399.2 +29517 chr17 HAVANA gene 35934518 35943699 1126.0 - 0 ENSG00000275722.4 protein_coding LYZL6 2 OTTHUMG00000188400.1 +29518 chr17 HAVANA gene 35963488 35965472 407.0 - 0 ENSG00000273736.1 transcribed_unprocessed_pseudogene AC244100.1 2 OTTHUMG00000188401.1 +29519 chr17 HAVANA gene 35976493 35981496 1744.0 - 0 ENSG00000275152.4 protein_coding CCL16 2 OTTHUMG00000188402.1 +29520 chr17 HAVANA gene 35983291 35987004 3269.0 - 0 ENSG00000276409.4 protein_coding CCL14 2 OTTHUMG00000188403.2 +29521 chr17 HAVANA gene 35983656 35990270 3952.0 + 0 ENSG00000275431.1 antisense AC244100.2 2 OTTHUMG00000188404.1 +29522 chr17 HAVANA gene 35983656 36001621 1047.0 - 0 ENSG00000275688.4 protein_coding CCL15-CCL14 2 OTTHUMG00000188405.1 +29523 chr17 HAVANA gene 35996440 36002038 1560.0 - 0 ENSG00000275718.1 protein_coding CCL15 2 OTTHUMG00000188406.1 +29524 chr17 HAVANA gene 36001419 36011618 1919.0 + 0 ENSG00000275944.1 antisense AC244100.3 2 OTTHUMG00000188407.1 +29525 chr17 HAVANA gene 36012504 36012891 388.0 + 0 ENSG00000278690.1 lincRNA AC244100.4 2 OTTHUMG00000188408.1 +29526 chr17 HAVANA gene 36013056 36017968 738.0 - 0 ENSG00000274736.4 protein_coding CCL23 2 OTTHUMG00000188409.1 +29527 chr17 HAVANA gene 36064280 36072032 1397.0 + 0 ENSG00000275385.1 protein_coding CCL18 2 OTTHUMG00000188410.1 +29528 chr17 HAVANA gene 36072866 36090134 1706.0 + 0 ENSG00000277089.4 antisense AC243829.4 2 OTTHUMG00000188411.1 +29529 chr17 HAVANA gene 36088256 36090169 1494.0 - 0 ENSG00000277632.1 protein_coding CCL3 2 OTTHUMG00000188413.1 +29530 chr17 HAVANA gene 36103590 36105621 2032.0 + 0 ENSG00000275302.1 protein_coding CCL4 2 OTTHUMG00000188414.1 +29531 chr17 ENSEMBL gene 36110150 36110447 298.0 + 0 ENSG00000276014.1 misc_RNA RN7SL301P 3 +29532 chr17 HAVANA gene 36161607 36162926 225.0 + 0 ENSG00000282738.1 unprocessed_pseudogene AC243829.7 1 OTTHUMG00000188416.2 pseudo_consens +29533 chr17 HAVANA gene 36165681 36176636 2844.0 - 0 ENSG00000274808.5 protein_coding TBC1D3B 2 OTTHUMG00000188417.1 +29534 chr17 HAVANA gene 36116177 36177510 610.0 + 0 ENSG00000276241.1 antisense AC243829.2 2 OTTHUMG00000188415.1 +29535 chr17 HAVANA gene 36183235 36196471 1401.0 + 0 ENSG00000274767.1 antisense AC243829.1 2 OTTHUMG00000188418.1 +29536 chr17 HAVANA gene 36194869 36196758 1469.0 - 0 ENSG00000276085.1 protein_coding CCL3L1 2 OTTHUMG00000188419.1 +29537 chr17 HAVANA gene 36210924 36212878 1397.0 + 0 ENSG00000276070.4 protein_coding CCL4L2 2 OTTHUMG00000188420.1 +29538 chr17 HAVANA gene 36225246 36226807 247.0 - 0 ENSG00000278097.1 lincRNA AC243829.5 2 OTTHUMG00000188421.1 +29539 chr17 HAVANA gene 36234447 36234554 108.0 - 0 ENSG00000276755.1 unprocessed_pseudogene AC243829.3 2 OTTHUMG00000188422.1 +29540 chr17 HAVANA gene 36241701 36241806 106.0 + 0 ENSG00000278395.1 unprocessed_pseudogene AC243829.6 2 OTTHUMG00000188423.1 +29541 chr17 HAVANA gene 36253456 36264553 2288.0 - 0 ENSG00000274933.5 protein_coding TBC1D3I 2 OTTHUMG00000188424.2 +29542 chr17 ENSEMBL gene 36285312 36285413 102.0 + 0 ENSG00000265889.1 misc_RNA RF00019 3 +29543 chr17 HAVANA gene 36274191 36320547 1168.0 + 0 ENSG00000261499.2 unprocessed_pseudogene AC233699.1 2 OTTHUMG00000188425.1 +29544 chr17 HAVANA gene 36323884 36334759 2065.0 + 0 ENSG00000260287.4 protein_coding TBC1D3G 2 OTTHUMG00000188426.1 +29545 chr17 HAVANA gene 36377531 36388423 2065.0 - 0 ENSG00000274226.5 protein_coding TBC1D3H 2 OTTHUMG00000188427.1 +29546 chr17 ENSEMBL gene 36404826 36404932 107.0 - 0 ENSG00000277029.1 snRNA RNU6-1192P 3 +29547 chr17 HAVANA gene 36428618 36439566 2117.0 - 0 ENSG00000275954.5 protein_coding TBC1D3F 2 OTTHUMG00000188428.1 +29548 chr17 HAVANA gene 36450146 36457535 1426.0 - 0 ENSG00000274658.1 unprocessed_pseudogene TBC1D3J 2 OTTHUMG00000188429.1 +29549 chr17 ENSEMBL gene 36491199 36491322 124.0 - 0 ENSG00000274164.1 rRNA_pseudogene RNA5SP439 3 +29550 chr17 HAVANA gene 36486629 36499310 6687.0 + 0 ENSG00000273611.4 protein_coding ZNHIT3 2 OTTHUMG00000188436.3 +29551 chr17 HAVANA gene 36535020 36539310 2799.0 + 0 ENSG00000277161.1 protein_coding PIGW 2 OTTHUMG00000188438.3 +29552 chr17 HAVANA gene 36495633 36543435 13075.0 - 0 ENSG00000278259.4 protein_coding MYO19 2 OTTHUMG00000188437.2 +29553 chr17 HAVANA gene 36574462 36575325 864.0 - 0 ENSG00000274756.1 processed_pseudogene AC243732.1 1 OTTHUMG00000188441.1 pseudo_consens +29554 chr17 HAVANA gene 36544888 36589848 9729.0 + 0 ENSG00000278311.4 protein_coding GGNBP2 2 OTTHUMG00000193344.1 overlapping_locus +29555 chr17 HAVANA gene 36591798 36600806 5462.0 + 0 ENSG00000278535.4 protein_coding DHRS11 2 OTTHUMG00000188442.2 overlapping_locus +29556 chr17 HAVANA gene 36601572 36608971 1857.0 + 0 ENSG00000278619.4 protein_coding MRM1 2 OTTHUMG00000188443.1 +29557 chr17 HAVANA gene 36634069 36634698 630.0 + 0 ENSG00000275720.1 lincRNA AC243830.2 2 OTTHUMG00000188444.1 +29558 chr17 HAVANA gene 36684754 36685129 376.0 + 0 ENSG00000276508.1 lincRNA AC243830.3 2 OTTHUMG00000188445.1 +29559 chr17 HAVANA gene 36722583 36726340 455.0 + 0 ENSG00000275613.1 lincRNA AC243830.1 2 OTTHUMG00000188446.1 +29560 chr17 HAVANA gene 36861674 36936661 2544.0 - 0 ENSG00000277268.1 antisense LHX1-DT 2 OTTHUMG00000188447.1 +29561 chr17 HAVANA gene 36940049 36943456 544.0 - 0 ENSG00000276707.1 antisense AC243773.1 2 OTTHUMG00000188457.1 +29562 chr17 HAVANA gene 36936785 36944612 4882.0 + 0 ENSG00000273706.4 protein_coding LHX1 2 OTTHUMG00000188456.1 +29563 chr17 HAVANA gene 36980167 36980422 256.0 + 0 ENSG00000277911.1 sense_intronic AC243773.2 2 OTTHUMG00000188459.1 +29564 chr17 HAVANA gene 36998598 37000034 710.0 + 0 ENSG00000277589.1 sense_intronic AC244093.4 2 OTTHUMG00000188460.1 +29565 chr17 ENSEMBL gene 37033745 37033813 69.0 + 0 ENSG00000276326.1 miRNA MIR2909 3 +29566 chr17 HAVANA gene 37034668 37043252 411.0 + 0 ENSG00000277579.1 sense_intronic AC244093.3 2 OTTHUMG00000188461.1 +29567 chr17 HAVANA gene 37045462 37052775 718.0 - 0 ENSG00000278638.1 antisense AC244093.5 2 OTTHUMG00000188462.1 +29568 chr17 HAVANA gene 36948875 37056871 4714.0 + 0 ENSG00000275700.4 protein_coding AATF 2 OTTHUMG00000188458.2 ncRNA_host +29569 chr17 HAVANA gene 37140611 37141424 814.0 - 0 ENSG00000274308.1 processed_pseudogene AC244093.1 1 OTTHUMG00000188464.1 pseudo_consens +29570 chr17 HAVANA gene 37143607 37144463 857.0 - 0 ENSG00000275029.1 transcribed_processed_pseudogene HMGB1P24 1 OTTHUMG00000188465.1 pseudo_consens +29571 chr17 HAVANA gene 37162616 37163139 524.0 + 0 ENSG00000276810.1 processed_pseudogene AC244093.2 1 OTTHUMG00000188466.1 pseudo_consens +29572 chr17 HAVANA gene 37386886 37387926 735.0 + 0 ENSG00000276054.1 sense_intronic AC243654.3 2 OTTHUMG00000188468.1 +29573 chr17 HAVANA gene 37375986 37392708 1919.0 + 0 ENSG00000278505.4 protein_coding C17orf78 2 OTTHUMG00000188467.1 +29574 chr17 HAVANA gene 37084988 37406818 13008.0 - 0 ENSG00000278540.4 protein_coding ACACA 2 OTTHUMG00000188463.2 +29575 chr17 HAVANA gene 37407936 37408594 293.0 - 0 ENSG00000273965.1 antisense AC243654.1 2 OTTHUMG00000188470.1 +29576 chr17 HAVANA gene 37454171 37454931 443.0 + 0 ENSG00000275839.1 processed_pseudogene AC243654.2 1 OTTHUMG00000188471.1 pseudo_consens +29577 chr17 HAVANA gene 37406874 37479730 5654.0 + 0 ENSG00000276234.4 protein_coding TADA2A 2 OTTHUMG00000188469.2 +29578 chr17 HAVANA gene 37489831 37513501 2499.0 + 0 ENSG00000276023.4 protein_coding DUSP14 2 OTTHUMG00000188472.1 +29579 chr17 HAVANA gene 37514797 37609496 14277.0 - 0 ENSG00000275066.4 protein_coding SYNRG 2 OTTHUMG00000188473.2 +29580 chr17 HAVANA gene 37609739 37613841 508.0 + 0 ENSG00000277688.1 antisense AC243585.2 2 OTTHUMG00000188474.1 +29581 chr17 ENSEMBL gene 37614931 37615039 109.0 - 0 ENSG00000274620.1 miRNA MIR378J 3 +29582 chr17 HAVANA gene 37609739 37643464 9546.0 - 0 ENSG00000278053.4 protein_coding DDX52 2 OTTHUMG00000188475.1 ncRNA_host +29583 chr17 HAVANA gene 37649133 37650894 607.0 + 0 ENSG00000274244.1 lincRNA AC243585.1 2 OTTHUMG00000188477.1 +29584 chr17 HAVANA gene 37642947 37684252 1095.0 + 0 ENSG00000277501.1 antisense AC243571.2 2 OTTHUMG00000188476.1 +29585 chr17 HAVANA gene 37686432 37745247 5962.0 - 0 ENSG00000275410.4 protein_coding HNF1B 2 OTTHUMG00000188478.1 +29586 chr17 HAVANA gene 37798894 37802788 478.0 - 0 ENSG00000275173.1 lincRNA AC243571.1 2 OTTHUMG00000188479.1 +29587 chr17 HAVANA gene 37828305 37884743 2998.0 - 0 ENSG00000276715.4 transcribed_unprocessed_pseudogene YWHAEP7 2 OTTHUMG00000188480.2 +29588 chr17 ENSEMBL gene 37907957 37908063 107.0 + 0 ENSG00000277341.1 snRNA RNU6-489P 3 +29589 chr17 HAVANA gene 37924415 37935365 2116.0 + 0 ENSG00000273513.1 protein_coding TBC1D3K 2 OTTHUMG00000188481.1 +29590 chr17 ENSEMBL gene 37940704 37940790 87.0 - 0 ENSG00000277488.1 rRNA RF00001 3 +29591 chr17 HAVANA gene 37977972 37989048 2248.0 - 0 ENSG00000274512.5 protein_coding TBC1D3L 2 OTTHUMG00000188482.1 +29592 chr17 HAVANA gene 38003976 38014902 2116.0 + 0 ENSG00000274419.6 protein_coding TBC1D3D 2 OTTHUMG00000188483.1 +29593 chr17 HAVANA gene 38057693 38068592 2063.0 - 0 ENSG00000278299.5 protein_coding TBC1D3C 2 OTTHUMG00000188484.1 +29594 chr17 ENSEMBL gene 38089399 38089500 102.0 + 0 ENSG00000275006.1 misc_RNA RF00019 3 +29595 chr17 HAVANA gene 38078262 38124770 1300.0 + 0 ENSG00000274615.1 unprocessed_pseudogene AC233968.1 2 OTTHUMG00000188485.1 +29596 chr17 HAVANA gene 38127951 38138862 2076.0 + 0 ENSG00000278599.5 protein_coding TBC1D3E 2 OTTHUMG00000188486.1 +29597 chr17 ENSEMBL gene 38144201 38144287 87.0 - 0 ENSG00000274663.1 rRNA RNA5SP526 3 +29598 chr17 HAVANA gene 38181659 38192541 2063.0 - 0 ENSG00000274611.3 protein_coding TBC1D3 2 OTTHUMG00000188487.1 +29599 chr17 ENSEMBL gene 38231043 38231144 102.0 - 0 ENSG00000274284.1 misc_RNA RF00019 3 +29600 chr17 HAVANA gene 38195703 38257192 1688.0 - 0 ENSG00000274487.2 transcribed_unprocessed_pseudogene AC244154.1 2 OTTHUMG00000188488.3 +29601 chr17 HAVANA gene 38297023 38323218 1705.0 + 0 ENSG00000278845.4 protein_coding MRPL45 2 OTTHUMG00000188489.1 +29602 chr17 HAVANA gene 38325530 38343847 8182.0 - 0 ENSG00000277399.4 protein_coding GPR179 2 OTTHUMG00000188545.1 +29603 chr17 HAVANA gene 38352228 38405593 8621.0 + 0 ENSG00000274211.4 protein_coding SOCS7 2 OTTHUMG00000188546.2 +29604 chr17 HAVANA gene 38450394 38452444 1248.0 - 0 ENSG00000276170.4 processed_transcript AC244153.1 2 OTTHUMG00000188548.1 +29605 chr17 HAVANA gene 38419280 38512392 8133.0 + 0 ENSG00000275832.4 protein_coding ARHGAP23 2 OTTHUMG00000188547.3 +29606 chr17 HAVANA gene 38601049 38602701 571.0 + 0 ENSG00000274996.1 antisense AC006449.1 2 OTTHUMG00000188494.1 +29607 chr17 HAVANA gene 38530016 38605930 11658.0 - 0 ENSG00000277363.4 protein_coding SRCIN1 2 OTTHUMG00000188493.2 +29608 chr17 HAVANA gene 38671703 38675421 3719.0 - 0 ENSG00000273604.1 protein_coding EPOP 2 OTTHUMG00000188495.1 +29609 chr17 ENSEMBL gene 38702262 38702331 70.0 - 0 ENSG00000275238.1 miRNA MIR4734 3 +29610 chr17 HAVANA gene 38702452 38704747 2296.0 + 0 ENSG00000277969.1 lincRNA AC006449.6 2 OTTHUMG00000188496.1 +29611 chr17 HAVANA gene 38703480 38706261 486.0 - 0 ENSG00000275532.1 antisense AC006449.2 2 OTTHUMG00000188497.1 +29612 chr17 ENSEMBL gene 38719691 38719748 58.0 + 0 ENSG00000273627.1 miRNA MIR4726 3 +29613 chr17 HAVANA gene 38715328 38720272 563.0 - 0 ENSG00000275665.1 antisense AC006449.3 2 OTTHUMG00000188499.1 +29614 chr17 HAVANA gene 38727833 38728198 366.0 - 0 ENSG00000279119.1 TEC AC006449.7 2 OTTHUMG00000192075.2 +29615 chr17 HAVANA gene 38705542 38729803 13315.0 + 0 ENSG00000275023.4 protein_coding MLLT6 2 OTTHUMG00000188498.1 ncRNA_host +29616 chr17 ENSEMBL gene 38731802 38731920 119.0 - 0 ENSG00000276036.1 rRNA_pseudogene RNA5SP440 3 +29617 chr17 HAVANA gene 38730235 38735044 2663.0 + 0 ENSG00000277972.1 protein_coding CISD3 2 OTTHUMG00000188500.1 +29618 chr17 HAVANA gene 38733897 38749817 3511.0 - 0 ENSG00000277258.4 protein_coding PCGF2 2 OTTHUMG00000188501.1 +29619 chr17 HAVANA gene 38749360 38751457 2098.0 + 0 ENSG00000277182.1 antisense AC006449.5 2 OTTHUMG00000188502.1 +29620 chr17 ENSEMBL gene 38755279 38755400 122.0 - 0 ENSG00000274607.1 snRNA RNU6-866P 3 +29621 chr17 HAVANA gene 38752736 38764231 1179.0 + 0 ENSG00000277791.4 protein_coding PSMB3 2 OTTHUMG00000188503.2 +29622 chr17 HAVANA gene 38765689 38800126 6135.0 - 0 ENSG00000276293.4 protein_coding PIP4K2B 2 OTTHUMG00000188504.2 +29623 chr17 HAVANA gene 38800434 38825481 3848.0 - 0 ENSG00000273559.4 protein_coding CWC25 2 OTTHUMG00000188505.1 +29624 chr17 ENSEMBL gene 38825838 38825892 55.0 + 0 ENSG00000274054.1 miRNA MIR4727 3 +29625 chr17 HAVANA gene 38835088 38841455 632.0 - 0 ENSG00000275489.1 protein_coding C17orf98 2 OTTHUMG00000188506.1 +29626 chr17 ENSEMBL gene 38851524 38851659 136.0 - 0 ENSG00000252699.1 snoRNA SNORA21B 3 +29627 chr17 ENSEMBL gene 38852863 38852994 132.0 - 0 ENSG00000199293.1 snoRNA SNORA21 3 +29628 chr17 HAVANA gene 38847865 38853843 5979.0 - 0 ENSG00000125691.12 protein_coding RPL23 2 OTTHUMG00000133118.4 ncRNA_host +29629 chr17 HAVANA gene 38855314 38855670 357.0 + 0 ENSG00000244086.1 processed_pseudogene AC110749.1 1 OTTHUMG00000157838.1 pseudo_consens +29630 chr17 HAVANA gene 38903704 38904600 437.0 - 0 ENSG00000263466.1 antisense AC006441.1 2 OTTHUMG00000178866.1 +29631 chr17 ENSEMBL gene 38914979 38915042 64.0 + 0 ENSG00000277057.1 miRNA MIR6779 3 +29632 chr17 HAVANA gene 38918801 38921769 456.0 - 0 ENSG00000265784.1 antisense AC006441.3 2 OTTHUMG00000178867.1 +29633 chr17 HAVANA gene 38869859 38921770 7061.0 + 0 ENSG00000002834.17 protein_coding LASP1 1 OTTHUMG00000133182.7 ncRNA_host +29634 chr17 HAVANA gene 38925168 38929384 3692.0 + 0 ENSG00000263874.2 protein_coding LINC00672 2 OTTHUMG00000178440.3 +29635 chr17 HAVANA gene 38936432 38967402 2302.0 - 0 ENSG00000204952.2 protein_coding FBXO47 2 OTTHUMG00000178945.1 +29636 chr17 HAVANA gene 38996323 38996624 302.0 - 0 ENSG00000265428.1 processed_pseudogene AC006441.2 1 OTTHUMG00000178946.1 pseudo_consens +29637 chr17 HAVANA gene 39003248 39013032 983.0 - 0 ENSG00000266588.1 lincRNA AC006441.4 2 OTTHUMG00000178947.1 +29638 chr17 HAVANA gene 39023394 39026742 209.0 + 0 ENSG00000277426.1 unprocessed_pseudogene AC006441.5 2 OTTHUMG00000187925.1 +29639 chr17 HAVANA gene 39026715 39027110 294.0 - 0 ENSG00000266013.1 lincRNA LINC02079 2 OTTHUMG00000178953.1 +29640 chr17 HAVANA gene 39033926 39034042 117.0 - 0 ENSG00000266048.1 processed_pseudogene AC091178.1 2 OTTHUMG00000178952.1 +29641 chr17 HAVANA gene 39027277 39053205 7190.0 + 0 ENSG00000214553.10 transcribed_unprocessed_pseudogene LRRC37A11P 2 OTTHUMG00000133184.4 +29642 chr17 HAVANA gene 39057019 39113190 4171.0 + 0 ENSG00000263818.5 transcribed_processed_pseudogene RDM1P5 2 OTTHUMG00000178956.1 +29643 chr17 HAVANA gene 39063303 39154394 9277.0 - 0 ENSG00000161381.13 protein_coding PLXDC1 1 OTTHUMG00000133183.14 +29644 chr17 HAVANA gene 39156894 39167484 3418.0 - 0 ENSG00000141748.12 protein_coding ARL5C 2 OTTHUMG00000179048.6 +29645 chr17 HAVANA gene 39165073 39167849 2777.0 + 0 ENSG00000280177.1 TEC AC004408.2 2 OTTHUMG00000178975.1 +29646 chr17 HAVANA gene 39173290 39177503 573.0 + 0 ENSG00000266101.1 antisense AC004408.1 2 OTTHUMG00000178976.1 +29647 chr17 HAVANA gene 39173456 39197703 7094.0 - 0 ENSG00000067191.15 protein_coding CACNB1 2 OTTHUMG00000133217.4 +29648 chr17 HAVANA gene 39200283 39204732 1761.0 + 0 ENSG00000108298.11 protein_coding RPL19 1 OTTHUMG00000178979.8 +29649 chr17 HAVANA gene 39210536 39225872 3362.0 - 0 ENSG00000141750.6 protein_coding STAC2 2 OTTHUMG00000179039.2 +29650 chr17 HAVANA gene 39238466 39250818 1294.0 + 0 ENSG00000265460.6 transcribed_processed_pseudogene AC015910.1 2 OTTHUMG00000179037.4 +29651 chr17 HAVANA gene 39252644 39402523 11038.0 - 0 ENSG00000108306.12 protein_coding FBXL20 2 OTTHUMG00000179002.8 +29652 chr17 HAVANA gene 39401793 39406233 860.0 + 0 ENSG00000266469.1 antisense AC005288.1 2 OTTHUMG00000178977.1 +29653 chr17 HAVANA gene 39404285 39451286 7330.0 - 0 ENSG00000125686.11 protein_coding MED1 1 OTTHUMG00000133216.3 +29654 chr17 ENSEMBL gene 39546104 39546244 141.0 - 0 ENSG00000222777.1 snRNA RNU6-233P 3 +29655 chr17 HAVANA gene 39461511 39564907 12773.0 + 0 ENSG00000167258.13 protein_coding CDK12 1 OTTHUMG00000133214.8 +29656 chr17 HAVANA gene 39566915 39567559 645.0 + 0 ENSG00000273576.1 lincRNA AC009283.1 2 OTTHUMG00000186646.1 +29657 chr17 HAVANA gene 39603536 39609777 6242.0 - 0 ENSG00000171532.4 protein_coding NEUROD2 2 OTTHUMG00000133211.2 +29658 chr17 HAVANA gene 39619613 39622513 616.0 + 0 ENSG00000214546.3 lincRNA AC087491.1 2 OTTHUMG00000132690.1 +29659 chr17 HAVANA gene 39626740 39636626 4554.0 + 0 ENSG00000131771.13 protein_coding PPP1R1B 2 OTTHUMG00000133210.7 +29660 chr17 HAVANA gene 39637065 39663484 5160.0 + 0 ENSG00000131748.15 protein_coding STARD3 1 OTTHUMG00000133213.12 +29661 chr17 HAVANA gene 39664187 39666555 2123.0 + 0 ENSG00000173991.5 protein_coding TCAP 2 OTTHUMG00000133215.2 +29662 chr17 HAVANA gene 39667981 39670475 1457.0 + 0 ENSG00000141744.3 protein_coding PNMT 1 OTTHUMG00000133209.2 +29663 chr17 HAVANA gene 39671122 39696797 3669.0 - 0 ENSG00000161395.13 protein_coding PGAP3 1 OTTHUMG00000179110.6 +29664 chr17 ENSEMBL gene 39726495 39726561 67.0 + 0 ENSG00000265178.1 miRNA MIR4728 3 +29665 chr17 HAVANA gene 39687914 39730426 10321.0 + 0 ENSG00000141736.13 protein_coding ERBB2 1 OTTHUMG00000179300.3 ncRNA_host +29666 chr17 HAVANA gene 39728496 39730787 2292.0 - 0 ENSG00000141741.11 protein_coding MIEN1 2 OTTHUMG00000133252.3 +29667 chr17 HAVANA gene 39737927 39747291 3597.0 + 0 ENSG00000141738.13 protein_coding GRB7 2 OTTHUMG00000133253.5 +29668 chr17 HAVANA gene 39835037 39836080 1044.0 - 0 ENSG00000264663.1 processed_pseudogene KRT8P34 1 OTTHUMG00000179518.1 pseudo_consens,overlapping_locus +29669 chr17 HAVANA gene 39839369 39839524 156.0 - 0 ENSG00000226117.1 processed_pseudogene AC090844.1 1 OTTHUMG00000132688.1 pseudo_consens,overlapping_locus +29670 chr17 HAVANA gene 39757715 39864188 10008.0 - 0 ENSG00000161405.16 protein_coding IKZF3 2 OTTHUMG00000133250.4 +29671 chr17 HAVANA gene 39868164 39877896 2295.0 + 0 ENSG00000186075.12 protein_coding ZPBP2 1 OTTHUMG00000133022.3 +29672 chr17 HAVANA gene 39904595 39919854 5905.0 - 0 ENSG00000073605.18 protein_coding GSDMB 2 OTTHUMG00000133248.6 +29673 chr17 HAVANA gene 39921041 39927601 3752.0 - 0 ENSG00000172057.9 protein_coding ORMDL3 1 OTTHUMG00000133249.3 +29674 chr17 HAVANA gene 39927742 39939601 965.0 + 0 ENSG00000264968.1 lincRNA AC090844.2 2 OTTHUMG00000179520.1 +29675 chr17 HAVANA gene 39941474 39944747 891.0 + 0 ENSG00000204913.5 protein_coding LRRC3C 2 OTTHUMG00000179521.1 +29676 chr17 HAVANA gene 39953263 39977766 2273.0 + 0 ENSG00000167914.11 protein_coding GSDMA 2 OTTHUMG00000179522.3 +29677 chr17 HAVANA gene 39980797 39997960 4964.0 + 0 ENSG00000108344.14 protein_coding PSMD3 2 OTTHUMG00000133251.2 +29678 chr17 HAVANA gene 40012226 40014705 982.0 - 0 ENSG00000265799.1 lincRNA AC090844.3 2 OTTHUMG00000179523.1 +29679 chr17 HAVANA gene 40015361 40017813 2220.0 + 0 ENSG00000108342.12 protein_coding CSF3 2 OTTHUMG00000133247.3 +29680 chr17 ENSEMBL gene 40026332 40026409 78.0 - 0 ENSG00000283721.1 miRNA MIR6884 3 +29681 chr17 ENSEMBL gene 40027542 40027645 104.0 - 0 ENSG00000238793.1 snoRNA SNORD124 3 +29682 chr17 HAVANA gene 40019097 40061215 6962.0 - 0 ENSG00000008838.19 protein_coding MED24 1 OTTHUMG00000133329.6 ncRNA_host +29683 chr17 HAVANA gene 40058290 40093867 6959.0 + 0 ENSG00000126351.12 protein_coding THRA 2 OTTHUMG00000133332.3 +29684 chr17 HAVANA gene 40092787 40100725 2772.0 - 0 ENSG00000126368.5 protein_coding NR1D1 2 OTTHUMG00000133327.2 +29685 chr17 HAVANA gene 40113215 40115442 2228.0 - 0 ENSG00000279199.1 TEC AC068669.1 2 OTTHUMG00000179628.1 +29686 chr17 HAVANA gene 40122298 40136916 7397.0 + 0 ENSG00000188895.11 protein_coding MSL1 1 OTTHUMG00000179629.4 +29687 chr17 ENSEMBL gene 40161933 40162001 69.0 + 0 ENSG00000284144.1 miRNA MIR6866 3 +29688 chr17 HAVANA gene 40140318 40172183 6380.0 + 0 ENSG00000108349.16 protein_coding CASC3 2 OTTHUMG00000133323.5 ncRNA_host +29689 chr17 ENSEMBL gene 40193597 40193663 67.0 + 0 ENSG00000274621.1 miRNA MIR6867 3 +29690 chr17 HAVANA gene 40177010 40195656 5711.0 + 0 ENSG00000108352.12 protein_coding RAPGEFL1 1 OTTHUMG00000133325.8 ncRNA_host +29691 chr17 HAVANA gene 40219304 40284136 8123.0 + 0 ENSG00000171475.13 protein_coding WIPF2 2 OTTHUMG00000133331.4 +29692 chr17 HAVANA gene 40287633 40304657 5557.0 + 0 ENSG00000094804.10 protein_coding CDC6 2 OTTHUMG00000133324.5 +29693 chr17 HAVANA gene 40340867 40343136 1790.0 - 0 ENSG00000265666.1 antisense RARA-AS1 2 OTTHUMG00000179631.1 +29694 chr17 HAVANA gene 40348049 40350539 2491.0 - 0 ENSG00000278918.1 TEC AC080112.3 2 OTTHUMG00000179632.1 +29695 chr17 HAVANA gene 40309192 40357643 4731.0 + 0 ENSG00000131759.17 protein_coding RARA 1 OTTHUMG00000133328.5 +29696 chr17 HAVANA gene 40362931 40363815 885.0 - 0 ENSG00000183153.6 protein_coding GJD3 2 OTTHUMG00000179634.2 +29697 chr17 HAVANA gene 40360655 40364693 2094.0 + 0 ENSG00000266208.1 antisense AC080112.1 2 OTTHUMG00000179633.1 +29698 chr17 HAVANA gene 40367952 40368438 487.0 + 0 ENSG00000264655.1 processed_pseudogene PPIAP54 1 OTTHUMG00000179635.1 pseudo_consens +29699 chr17 ENSEMBL gene 40374089 40374176 88.0 + 0 ENSG00000252618.1 rRNA_pseudogene RNA5SP441 3 +29700 chr17 HAVANA gene 40380666 40381838 880.0 - 0 ENSG00000278346.1 processed_pseudogene AC080112.2 2 OTTHUMG00000187933.1 +29701 chr17 ENSEMBL gene 40391232 40391338 107.0 - 0 ENSG00000222881.1 misc_RNA RF00019 3 +29702 chr17 HAVANA gene 40388516 40417950 6437.0 - 0 ENSG00000131747.14 protein_coding TOP2A 1 OTTHUMG00000155008.3 ncRNA_host +29703 chr17 HAVANA gene 40439467 40439917 451.0 - 0 ENSG00000240125.1 processed_pseudogene RPL23AP75 1 OTTHUMG00000157840.1 pseudo_consens +29704 chr17 HAVANA gene 40443461 40457731 2200.0 + 0 ENSG00000141753.6 protein_coding IGFBP4 2 OTTHUMG00000133326.1 +29705 chr17 HAVANA gene 40473554 40475289 1736.0 - 0 ENSG00000279806.1 TEC AC018629.1 2 OTTHUMG00000176039.1 +29706 chr17 HAVANA gene 40475828 40501597 4847.0 - 0 ENSG00000131746.12 protein_coding TNS4 2 OTTHUMG00000133330.3 +29707 chr17 HAVANA gene 40517026 40527002 1198.0 + 0 ENSG00000266088.5 lincRNA AC004585.1 2 OTTHUMG00000179655.1 +29708 chr17 HAVANA gene 40553769 40565472 2508.0 - 0 ENSG00000126353.3 protein_coding CCR7 2 OTTHUMG00000133375.5 +29709 chr17 HAVANA gene 40597113 40598585 1473.0 - 0 ENSG00000279775.1 TEC AC004585.2 2 OTTHUMG00000176041.1 +29710 chr17 HAVANA gene 40624962 40648864 18680.0 - 0 ENSG00000073584.19 protein_coding SMARCE1 2 OTTHUMG00000133367.11 overlapping_locus +29711 chr17 HAVANA gene 40648300 40649718 1419.0 + 0 ENSG00000278834.1 antisense AC073508.3 2 OTTHUMG00000186647.1 +29712 chr17 HAVANA gene 40627356 40665141 5393.0 - 0 ENSG00000264058.2 protein_coding AC073508.2 2 OTTHUMG00000179656.2 overlapping_locus +29713 chr17 HAVANA gene 40654665 40665181 3169.0 - 0 ENSG00000213424.8 protein_coding KRT222 2 OTTHUMG00000133374.5 overlapping_locus +29714 chr17 HAVANA gene 40687038 40689360 656.0 - 0 ENSG00000224244.1 unprocessed_pseudogene AC073508.1 2 OTTHUMG00000137366.1 +29715 chr17 HAVANA gene 40697991 40703750 1881.0 - 0 ENSG00000167916.4 protein_coding KRT24 2 OTTHUMG00000133372.1 +29716 chr17 HAVANA gene 40717235 40721932 1705.0 - 0 ENSG00000229028.2 transcribed_unprocessed_pseudogene KRT223P 2 OTTHUMG00000133585.2 +29717 chr17 HAVANA gene 40748021 40755332 1670.0 - 0 ENSG00000204897.6 protein_coding KRT25 2 OTTHUMG00000133373.1 +29718 chr17 HAVANA gene 40766238 40772162 1733.0 - 0 ENSG00000186393.5 protein_coding KRT26 2 OTTHUMG00000133370.1 +29719 chr17 HAVANA gene 40776808 40782534 1783.0 - 0 ENSG00000171446.6 protein_coding KRT27 2 OTTHUMG00000133371.2 +29720 chr17 HAVANA gene 40792203 40799959 1685.0 - 0 ENSG00000173908.8 protein_coding KRT28 2 OTTHUMG00000133365.2 +29721 chr17 HAVANA gene 40803744 40809296 265.0 + 0 ENSG00000264488.1 lincRNA AC090283.1 2 OTTHUMG00000179792.1 +29722 chr17 HAVANA gene 40818117 40822595 2144.0 - 0 ENSG00000186395.7 protein_coding KRT10 2 OTTHUMG00000133368.3 +29723 chr17 HAVANA gene 40819106 40836274 2362.0 + 0 ENSG00000167920.8 protein_coding TMEM99 2 OTTHUMG00000133579.3 +29724 chr17 HAVANA gene 40850800 40863282 258.0 + 0 ENSG00000265359.1 antisense AC004231.3 2 OTTHUMG00000179793.1 +29725 chr17 HAVANA gene 40860943 40867224 2878.0 - 0 ENSG00000187242.5 protein_coding KRT12 2 OTTHUMG00000133369.4 +29726 chr17 HAVANA gene 40875941 40885227 1846.0 - 0 ENSG00000171431.3 protein_coding KRT20 2 OTTHUMG00000133366.3 +29727 chr17 HAVANA gene 40922696 40937634 2902.0 - 0 ENSG00000108244.16 protein_coding KRT23 2 OTTHUMG00000133376.5 +29728 chr17 HAVANA gene 40958417 40966892 1936.0 - 0 ENSG00000196859.7 protein_coding KRT39 2 OTTHUMG00000133424.2 +29729 chr17 HAVANA gene 40921430 40975926 815.0 + 0 ENSG00000234477.1 antisense AC004231.1 2 OTTHUMG00000133678.1 +29730 chr17 HAVANA gene 40977716 40987135 2225.0 - 0 ENSG00000204889.10 protein_coding KRT40 2 OTTHUMG00000133596.4 +29731 chr17 HAVANA gene 40993430 40994133 704.0 - 0 ENSG00000212899.2 protein_coding KRTAP3-3 2 OTTHUMG00000133591.1 +29732 chr17 HAVANA gene 40999193 40999894 702.0 - 0 ENSG00000212900.2 protein_coding KRTAP3-2 2 OTTHUMG00000133581.1 +29733 chr17 HAVANA gene 41004481 41004760 280.0 - 0 ENSG00000226776.1 unprocessed_pseudogene KRTAP3-4P 2 OTTHUMG00000133637.1 +29734 chr17 HAVANA gene 41008521 41019324 725.0 - 0 ENSG00000212901.3 protein_coding KRTAP3-1 2 OTTHUMG00000133595.2 +29735 chr17 HAVANA gene 41026026 41027202 1177.0 - 0 ENSG00000221852.4 protein_coding KRTAP1-5 2 OTTHUMG00000133587.1 +29736 chr17 HAVANA gene 41029697 41030104 408.0 - 0 ENSG00000204887.4 protein_coding KRTAP1-4 2 OTTHUMG00000133631.3 +29737 chr17 HAVANA gene 41033884 41034855 972.0 - 0 ENSG00000221880.3 protein_coding KRTAP1-3 2 OTTHUMG00000133583.1 +29738 chr17 HAVANA gene 41040559 41041461 903.0 - 0 ENSG00000188581.8 protein_coding KRTAP1-1 2 OTTHUMG00000133592.1 +29739 chr17 HAVANA gene 41046541 41047316 776.0 - 0 ENSG00000212725.3 protein_coding KRTAP2-1 2 OTTHUMG00000171405.1 +29740 chr17 HAVANA gene 41054498 41055230 733.0 - 0 ENSG00000214518.3 protein_coding KRTAP2-2 2 OTTHUMG00000133593.1 +29741 chr17 HAVANA gene 41059240 41060114 875.0 - 0 ENSG00000212724.3 protein_coding KRTAP2-3 2 OTTHUMG00000133655.1 +29742 chr17 HAVANA gene 41065116 41065879 764.0 - 0 ENSG00000213417.3 protein_coding KRTAP2-4 2 OTTHUMG00000133594.1 +29743 chr17 HAVANA gene 41071946 41072341 396.0 + 0 ENSG00000237230.1 unprocessed_pseudogene KRTAP2-5P 2 OTTHUMG00000133635.1 +29744 chr17 HAVANA gene 41084150 41085141 992.0 + 0 ENSG00000240871.5 protein_coding KRTAP4-7 2 OTTHUMG00000133582.1 +29745 chr17 HAVANA gene 41096981 41098141 1161.0 - 0 ENSG00000204880.7 protein_coding KRTAP4-8 2 OTTHUMG00000133580.1 +29746 chr17 HAVANA gene 41101502 41102209 708.0 - 0 ENSG00000241241.1 protein_coding KRTAP4-16 2 OTTHUMG00000133590.2 +29747 chr17 HAVANA gene 41105332 41106488 1157.0 + 0 ENSG00000212722.7 protein_coding KRTAP4-9 2 OTTHUMG00000133584.1 +29748 chr17 HAVANA gene 41117181 41118360 1180.0 - 0 ENSG00000212721.3 protein_coding KRTAP4-11 2 OTTHUMG00000133586.1 +29749 chr17 HAVANA gene 41123091 41124167 1077.0 - 0 ENSG00000213416.3 protein_coding KRTAP4-12 2 OTTHUMG00000133632.1 +29750 chr17 HAVANA gene 41139433 41140487 1055.0 - 0 ENSG00000198090.3 protein_coding KRTAP4-6 2 OTTHUMG00000133634.1 +29751 chr17 HAVANA gene 41148924 41149802 879.0 - 0 ENSG00000198271.4 protein_coding KRTAP4-5 2 OTTHUMG00000133638.1 +29752 chr17 HAVANA gene 41159651 41160731 1081.0 - 0 ENSG00000171396.11 protein_coding KRTAP4-4 2 OTTHUMG00000133428.2 +29753 chr17 HAVANA gene 41167231 41168194 964.0 - 0 ENSG00000196156.4 protein_coding KRTAP4-3 2 OTTHUMG00000133639.1 +29754 chr17 HAVANA gene 41177446 41178208 763.0 - 0 ENSG00000244537.2 protein_coding KRTAP4-2 2 OTTHUMG00000133437.1 +29755 chr17 HAVANA gene 41184102 41185342 1241.0 - 0 ENSG00000198443.6 protein_coding KRTAP4-1 2 OTTHUMG00000132081.1 +29756 chr17 HAVANA gene 41186944 41187136 193.0 - 0 ENSG00000251439.1 unprocessed_pseudogene KRTAP4-17P 2 OTTHUMG00000133664.1 +29757 chr17 HAVANA gene 41189887 41190639 753.0 + 0 ENSG00000240542.4 protein_coding KRTAP9-1 2 OTTHUMG00000133636.2 +29758 chr17 HAVANA gene 41212706 41213237 532.0 + 0 ENSG00000248807.1 unprocessed_pseudogene KRTAP9-12P 2 OTTHUMG00000133633.1 +29759 chr17 HAVANA gene 41226648 41227652 1005.0 + 0 ENSG00000239886.5 protein_coding KRTAP9-2 2 OTTHUMG00000133609.1 +29760 chr17 HAVANA gene 41232463 41233454 992.0 + 0 ENSG00000204873.4 protein_coding KRTAP9-3 2 OTTHUMG00000133427.1 +29761 chr17 HAVANA gene 41238045 41239004 960.0 + 0 ENSG00000187272.6 protein_coding KRTAP9-8 2 OTTHUMG00000133604.1 +29762 chr17 HAVANA gene 41249687 41250653 967.0 + 0 ENSG00000241595.2 protein_coding KRTAP9-4 2 OTTHUMG00000133438.1 +29763 chr17 HAVANA gene 41255384 41256364 981.0 + 0 ENSG00000198083.9 protein_coding KRTAP9-9 2 OTTHUMG00000133602.1 +29764 chr17 HAVANA gene 41265339 41266641 1303.0 + 0 ENSG00000212659.1 protein_coding KRTAP9-6 2 OTTHUMG00000133600.1 +29765 chr17 HAVANA gene 41271311 41271835 525.0 + 0 ENSG00000229351.1 unprocessed_pseudogene KRTAP9-11P 1 OTTHUMG00000133608.1 pseudo_consens +29766 chr17 HAVANA gene 41275659 41276697 1039.0 + 0 ENSG00000180386.7 protein_coding KRTAP9-7 2 OTTHUMG00000133605.1 +29767 chr17 HAVANA gene 41280604 41280810 207.0 + 0 ENSG00000237183.1 unprocessed_pseudogene KRTAP9-10P 2 OTTHUMG00000133663.1 +29768 chr17 HAVANA gene 41301826 41302851 1026.0 - 0 ENSG00000212658.1 protein_coding KRTAP29-1 2 OTTHUMG00000133662.3 +29769 chr17 HAVANA gene 41307700 41309253 1554.0 - 0 ENSG00000212657.1 protein_coding KRTAP16-1 2 OTTHUMG00000133640.2 +29770 chr17 HAVANA gene 41314917 41315695 779.0 - 0 ENSG00000186860.4 protein_coding KRTAP17-1 2 OTTHUMG00000133433.1 +29771 chr17 HAVANA gene 41323427 41329545 914.0 + 0 ENSG00000233014.1 unprocessed_pseudogene TBC1D3P7 2 OTTHUMG00000133669.1 +29772 chr17 HAVANA gene 41334632 41335733 421.0 + 0 ENSG00000108516.5 unprocessed_pseudogene AC003958.1 2 OTTHUMG00000133668.1 +29773 chr17 HAVANA gene 41346092 41350812 1287.0 - 0 ENSG00000006059.3 protein_coding KRT33A 2 OTTHUMG00000133432.1 +29774 chr17 HAVANA gene 41363494 41369800 1607.0 - 0 ENSG00000131738.10 protein_coding KRT33B 2 OTTHUMG00000133429.1 +29775 chr17 HAVANA gene 41377650 41382403 1751.0 - 0 ENSG00000131737.5 protein_coding KRT34 2 OTTHUMG00000133436.3 +29776 chr17 HAVANA gene 41393724 41397592 1596.0 - 0 ENSG00000094796.4 protein_coding KRT31 2 OTTHUMG00000133423.1 +29777 chr17 HAVANA gene 41406512 41411775 1293.0 - 0 ENSG00000225438.1 unprocessed_pseudogene KRT41P 2 OTTHUMG00000133601.1 +29778 chr17 HAVANA gene 41420753 41424523 1475.0 - 0 ENSG00000108417.3 protein_coding KRT37 2 OTTHUMG00000133606.2 +29779 chr17 HAVANA gene 41402416 41425049 4067.0 + 0 ENSG00000234859.5 antisense AC003958.2 2 OTTHUMG00000133598.3 +29780 chr17 HAVANA gene 41436446 41440921 2337.0 - 0 ENSG00000171360.3 protein_coding KRT38 2 OTTHUMG00000133439.2 +29781 chr17 HAVANA gene 41448183 41454055 910.0 - 0 ENSG00000236473.1 unprocessed_pseudogene KRT43P 2 OTTHUMG00000133683.1 +29782 chr17 HAVANA gene 41459811 41467429 1750.0 - 0 ENSG00000108759.3 protein_coding KRT32 2 OTTHUMG00000133430.1 +29783 chr17 ENSEMBL gene 41467956 41468146 191.0 + 0 ENSG00000223125.1 snRNA RNU2-32P 3 +29784 chr17 HAVANA gene 41476689 41481140 1778.0 - 0 ENSG00000197079.8 protein_coding KRT35 2 OTTHUMG00000133425.2 +29785 chr17 HAVANA gene 41486136 41492546 1865.0 - 0 ENSG00000126337.13 protein_coding KRT36 2 OTTHUMG00000133431.2 +29786 chr17 HAVANA gene 41500983 41502409 476.0 + 0 ENSG00000229732.1 antisense AC019349.1 2 OTTHUMG00000133684.1 +29787 chr17 HAVANA gene 41500981 41505705 2913.0 - 0 ENSG00000171401.14 protein_coding KRT13 2 OTTHUMG00000133434.4 +29788 chr17 ENSEMBL gene 41517164 41517217 54.0 - 0 ENSG00000283796.1 miRNA MIR6510 3 +29789 chr17 HAVANA gene 41513743 41522529 7069.0 - 0 ENSG00000171346.15 protein_coding KRT15 1 OTTHUMG00000133435.5 ncRNA_host +29790 chr17 HAVANA gene 41523617 41528308 2336.0 - 0 ENSG00000171345.13 protein_coding KRT19 1 OTTHUMG00000133422.5 +29791 chr17 HAVANA gene 41549606 41554495 2141.0 - 0 ENSG00000226629.1 lincRNA LINC00974 2 OTTHUMG00000133607.1 +29792 chr17 HAVANA gene 41565841 41572058 2290.0 - 0 ENSG00000171403.9 protein_coding KRT9 2 OTTHUMG00000133599.3 +29793 chr17 HAVANA gene 41582279 41586921 2281.0 - 0 ENSG00000186847.5 protein_coding KRT14 2 OTTHUMG00000133426.2 +29794 chr17 HAVANA gene 41609778 41615899 2475.0 - 0 ENSG00000186832.8 protein_coding KRT16 2 OTTHUMG00000133495.4 +29795 chr17 HAVANA gene 41619441 41624842 3130.0 - 0 ENSG00000128422.16 protein_coding KRT17 2 OTTHUMG00000133505.5 +29796 chr17 HAVANA gene 41626327 41640199 4221.0 - 0 ENSG00000214514.8 transcribed_unprocessed_pseudogene KRT42P 2 OTTHUMG00000152412.4 +29797 chr17 HAVANA gene 41665566 41668031 2466.0 + 0 ENSG00000278954.1 TEC AC130686.1 2 OTTHUMG00000179963.1 +29798 chr17 HAVANA gene 41688885 41692668 3623.0 + 0 ENSG00000173812.10 protein_coding EIF1 2 OTTHUMG00000133492.5 +29799 chr17 HAVANA gene 41712326 41715969 470.0 + 0 ENSG00000184502.3 protein_coding GAST 2 OTTHUMG00000133496.1 +29800 chr17 ENSEMBL gene 41718154 41718260 107.0 + 0 ENSG00000201920.1 rRNA_pseudogene RNA5SP442 3 +29801 chr17 ENSEMBL gene 41730127 41730405 279.0 - 0 ENSG00000239542.3 misc_RNA RN7SL399P 3 +29802 chr17 HAVANA gene 41717742 41734644 6223.0 - 0 ENSG00000173805.15 protein_coding HAP1 2 OTTHUMG00000133498.2 ncRNA_host +29803 chr17 HAVANA gene 41754604 41786931 4942.0 - 0 ENSG00000173801.16 protein_coding JUP 2 OTTHUMG00000133494.9 +29804 chr17 HAVANA gene 41801947 41812604 3740.0 - 0 ENSG00000141696.12 protein_coding P3H4 1 OTTHUMG00000133501.6 +29805 chr17 HAVANA gene 41812680 41823217 4273.0 + 0 ENSG00000141756.18 protein_coding FKBP10 1 OTTHUMG00000133497.5 +29806 chr17 HAVANA gene 41825181 41836263 2730.0 - 0 ENSG00000141698.16 protein_coding NT5C3B 1 OTTHUMG00000133499.9 +29807 chr17 HAVANA gene 41835685 41848384 2370.0 + 0 ENSG00000161594.6 protein_coding KLHL10 2 OTTHUMG00000152510.4 +29808 chr17 HAVANA gene 41848518 41851447 2930.0 - 0 ENSG00000259623.1 sense_overlapping AC125257.1 2 OTTHUMG00000172022.1 +29809 chr17 HAVANA gene 41853545 41865431 2383.0 - 0 ENSG00000178502.5 protein_coding KLHL11 2 OTTHUMG00000133506.2 +29810 chr17 HAVANA gene 41867581 41867736 156.0 + 0 ENSG00000274630.1 antisense AC125257.2 2 OTTHUMG00000186648.1 +29811 chr17 HAVANA gene 41866908 41930542 5217.0 - 0 ENSG00000131473.16 protein_coding ACLY 2 OTTHUMG00000133507.3 +29812 chr17 HAVANA gene 41930635 41965651 2500.0 + 0 ENSG00000204815.9 protein_coding TTC25 2 OTTHUMG00000175837.1 +29813 chr17 HAVANA gene 41966741 41977731 7426.0 + 0 ENSG00000173786.16 protein_coding CNP 1 OTTHUMG00000133502.7 +29814 chr17 HAVANA gene 41976433 42021376 9373.0 - 0 ENSG00000168259.14 protein_coding DNAJC7 2 OTTHUMG00000180862.4 +29815 chr17 HAVANA gene 42011382 42025644 5566.0 + 0 ENSG00000168256.17 protein_coding NKIRAS2 1 OTTHUMG00000133503.4 +29816 chr17 HAVANA gene 42038232 42050614 3746.0 - 0 ENSG00000267221.2 protein_coding C17orf113 2 OTTHUMG00000180103.2 overlapping_locus +29817 chr17 HAVANA gene 42025576 42098479 5198.0 - 0 ENSG00000187595.16 protein_coding ZNF385C 1 OTTHUMG00000132073.7 overlapping_locus +29818 chr17 HAVANA gene 42101404 42112733 3843.0 - 0 ENSG00000108771.12 protein_coding DHX58 2 OTTHUMG00000133493.3 +29819 chr17 HAVANA gene 42113108 42121358 3769.0 - 0 ENSG00000108773.10 protein_coding KAT2A 2 OTTHUMG00000133504.3 overlapping_locus +29820 chr17 HAVANA gene 42121431 42123352 1922.0 + 0 ENSG00000260325.1 protein_coding HSPB9 2 OTTHUMG00000133500.1 +29821 chr17 HAVANA gene 42119674 42154916 1199.0 - 0 ENSG00000267261.5 protein_coding AC099811.2 1 OTTHUMG00000180104.2 overlapping_locus +29822 chr17 HAVANA gene 42124976 42155044 2761.0 - 0 ENSG00000108774.14 protein_coding RAB5C 1 OTTHUMG00000169703.3 overlapping_locus +29823 chr17 HAVANA gene 42154600 42155972 425.0 + 0 ENSG00000267658.1 lincRNA AC099811.3 2 OTTHUMG00000180105.1 +29824 chr17 HAVANA gene 42156891 42181278 3924.0 - 0 ENSG00000089558.8 protein_coding KCNH4 2 OTTHUMG00000180106.3 +29825 chr17 HAVANA gene 42184060 42185452 577.0 - 0 ENSG00000161610.1 protein_coding HCRT 2 OTTHUMG00000180107.1 +29826 chr17 HAVANA gene 42188799 42194532 4019.0 - 0 ENSG00000167925.15 protein_coding GHDC 1 OTTHUMG00000180108.2 +29827 chr17 HAVANA gene 42233832 42235469 1638.0 + 0 ENSG00000280295.1 TEC AC099811.6 2 OTTHUMG00000180109.1 +29828 chr17 HAVANA gene 42268587 42269807 496.0 + 0 ENSG00000267758.1 antisense AC099811.4 2 OTTHUMG00000180110.1 +29829 chr17 HAVANA gene 42270517 42272683 1496.0 - 0 ENSG00000236194.3 sense_intronic AC099811.1 1 OTTHUMG00000132657.3 overlapping_locus +29830 chr17 HAVANA gene 42272069 42275571 819.0 - 0 ENSG00000278829.1 sense_intronic AC099811.5 2 OTTHUMG00000188116.1 +29831 chr17 HAVANA gene 42199168 42276707 6447.0 - 0 ENSG00000173757.9 protein_coding STAT5B 2 OTTHUMG00000150724.3 overlapping_locus +29832 chr17 HAVANA gene 42287547 42311943 5754.0 + 0 ENSG00000126561.16 protein_coding STAT5A 1 OTTHUMG00000150725.6 +29833 chr17 HAVANA gene 42313324 42388568 8812.0 - 0 ENSG00000168610.14 protein_coding STAT3 1 OTTHUMG00000150645.4 +29834 chr17 HAVANA gene 42402452 42423517 3828.0 - 0 ENSG00000177469.12 protein_coding CAVIN1 2 OTTHUMG00000180137.1 +29835 chr17 ENSEMBL gene 42440198 42440259 62.0 - 0 ENSG00000238704.1 snRNA RNU7-97P 3 +29836 chr17 ENSEMBL gene 42494773 42494830 58.0 + 0 ENSG00000264314.1 miRNA MIR548AT 3 +29837 chr17 HAVANA gene 42495867 42496550 684.0 + 0 ENSG00000267222.1 sense_intronic AC107993.1 2 OTTHUMG00000181854.1 overlapping_locus +29838 chr17 HAVANA gene 42509784 42511519 1736.0 + 0 ENSG00000267632.1 sense_intronic AC067852.3 2 OTTHUMG00000181855.1 overlapping_locus +29839 chr17 ENSEMBL gene 42514188 42514307 120.0 + 0 ENSG00000283929.1 miRNA MIR5010 3 +29840 chr17 HAVANA gene 42458844 42522611 10955.0 + 0 ENSG00000033627.16 protein_coding ATP6V0A1 1 OTTHUMG00000180238.2 ncRNA_host,overlapping_locus +29841 chr17 HAVANA gene 42533532 42534009 478.0 + 0 ENSG00000267185.1 processed_pseudogene PTP4A2P1 1 OTTHUMG00000180239.1 pseudo_consens +29842 chr17 HAVANA gene 42536172 42544449 3004.0 + 0 ENSG00000108784.9 protein_coding NAGLU 1 OTTHUMG00000180240.2 overlapping_locus +29843 chr17 HAVANA gene 42546764 42548706 955.0 + 0 ENSG00000108785.7 unprocessed_pseudogene HSD17B1P1 2 OTTHUMG00000180242.1 overlapping_locus +29844 chr17 HAVANA gene 42552436 42554748 2313.0 - 0 ENSG00000266962.2 antisense AC067852.2 2 OTTHUMG00000180244.2 +29845 chr17 HAVANA gene 42549214 42555213 5658.0 + 0 ENSG00000108786.10 protein_coding HSD17B1 2 OTTHUMG00000180243.1 overlapping_locus +29846 chr17 HAVANA gene 42536510 42562062 594.0 + 0 ENSG00000266929.1 processed_transcript AC067852.1 2 OTTHUMG00000180241.1 overlapping_locus +29847 chr17 HAVANA gene 42561467 42566277 4032.0 + 0 ENSG00000068120.14 protein_coding COASY 2 OTTHUMG00000180245.4 overlapping_locus +29848 chr17 HAVANA gene 42567068 42573239 4259.0 + 0 ENSG00000108788.11 protein_coding MLX 2 OTTHUMG00000180246.2 +29849 chr17 HAVANA gene 42572315 42577831 2573.0 - 0 ENSG00000131470.14 protein_coding PSMC3IP 2 OTTHUMG00000180247.2 +29850 chr17 HAVANA gene 42598643 42599177 535.0 + 0 ENSG00000280183.1 TEC AC067852.4 2 OTTHUMG00000180276.1 +29851 chr17 HAVANA gene 42579513 42610623 5145.0 - 0 ENSG00000141699.10 protein_coding RETREG3 1 OTTHUMG00000180275.2 +29852 chr17 HAVANA gene 42609676 42615234 2411.0 + 0 ENSG00000131462.7 protein_coding TUBG1 1 OTTHUMG00000180277.3 +29853 chr17 HAVANA gene 42647834 42648143 310.0 + 0 ENSG00000267189.1 processed_pseudogene ATP5MGP7 1 OTTHUMG00000180638.1 pseudo_consens +29854 chr17 HAVANA gene 42648178 42648738 561.0 + 0 ENSG00000267132.1 processed_pseudogene HMGB3P27 1 OTTHUMG00000180639.1 pseudo_consens +29855 chr17 HAVANA gene 42659305 42667006 2772.0 + 0 ENSG00000037042.8 protein_coding TUBG2 2 OTTHUMG00000180640.1 +29856 chr17 HAVANA gene 42667914 42676994 4803.0 - 0 ENSG00000068137.14 protein_coding PLEKHH3 1 OTTHUMG00000180641.2 +29857 chr17 HAVANA gene 42679963 42682020 542.0 + 0 ENSG00000267042.1 antisense AC100793.2 2 OTTHUMG00000180642.1 +29858 chr17 HAVANA gene 42678889 42683917 2619.0 - 0 ENSG00000184451.5 protein_coding CCR10 1 OTTHUMG00000132301.4 overlapping_locus +29859 chr17 HAVANA gene 42683187 42699466 719.0 - 0 ENSG00000267765.1 antisense AC100793.3 2 OTTHUMG00000180644.1 overlapping_locus +29860 chr17 HAVANA gene 42682613 42699814 6045.0 + 0 ENSG00000108797.11 protein_coding CNTNAP1 2 OTTHUMG00000180643.1 +29861 chr17 ENSEMBL gene 42708084 42708151 68.0 - 0 ENSG00000275273.1 miRNA MIR6780A 3 +29862 chr17 HAVANA gene 42714299 42714643 345.0 + 0 ENSG00000239671.1 processed_pseudogene AC100793.1 1 OTTHUMG00000157847.1 pseudo_consens +29863 chr17 HAVANA gene 42700275 42745049 6988.0 - 0 ENSG00000108799.12 protein_coding EZH1 1 OTTHUMG00000180645.2 ncRNA_host +29864 chr17 HAVANA gene 42751289 42751717 429.0 - 0 ENSG00000273650.1 lincRNA AC100793.4 2 OTTHUMG00000186649.1 +29865 chr17 HAVANA gene 42753530 42753799 270.0 - 0 ENSG00000214578.5 processed_pseudogene HMGN2P15 2 OTTHUMG00000180646.1 +29866 chr17 HAVANA gene 42753914 42761257 4168.0 - 0 ENSG00000197291.8 lincRNA RAMP2-AS1 2 OTTHUMG00000180647.1 +29867 chr17 HAVANA gene 42758447 42763041 1148.0 + 0 ENSG00000131477.10 protein_coding RAMP2 1 OTTHUMG00000180648.2 +29868 chr17 HAVANA gene 42773436 42779599 2404.0 + 0 ENSG00000131475.6 protein_coding VPS25 2 OTTHUMG00000180649.2 +29869 chr17 HAVANA gene 42780678 42796936 5089.0 + 0 ENSG00000126562.16 protein_coding WNK4 2 OTTHUMG00000180650.2 +29870 chr17 HAVANA gene 42795147 42798704 1922.0 - 0 ENSG00000183978.7 protein_coding COA3 2 OTTHUMG00000180651.1 +29871 chr17 HAVANA gene 42798792 42811587 3378.0 + 0 ENSG00000176563.9 protein_coding CNTD1 1 OTTHUMG00000180652.3 +29872 chr17 ENSEMBL gene 42823880 42823943 64.0 - 0 ENSG00000278447.1 miRNA MIR6781 3 +29873 chr17 HAVANA gene 42810134 42833350 6414.0 - 0 ENSG00000126581.12 protein_coding BECN1 1 OTTHUMG00000180653.5 ncRNA_host +29874 chr17 HAVANA gene 42824385 42843758 5152.0 + 0 ENSG00000131467.10 protein_coding PSME3 1 OTTHUMG00000180654.3 +29875 chr17 HAVANA gene 42844600 42850707 2657.0 + 0 ENSG00000131480.8 protein_coding AOC2 2 OTTHUMG00000180655.1 +29876 chr17 HAVANA gene 42851184 42858130 4524.0 + 0 ENSG00000131471.6 protein_coding AOC3 1 OTTHUMG00000180656.2 +29877 chr17 HAVANA gene 42865922 42874369 3169.0 + 0 ENSG00000260105.6 transcribed_unprocessed_pseudogene AOC4P 2 OTTHUMG00000176596.2 +29878 chr17 ENSEMBL gene 42891338 42891435 98.0 - 0 ENSG00000252039.1 snRNA RNU6-287P 3 +29879 chr17 HAVANA gene 42874670 42898704 2167.0 - 0 ENSG00000213373.7 lincRNA LINC00671 2 OTTHUMG00000132654.3 ncRNA_host +29880 chr17 HAVANA gene 42900797 42913369 3296.0 + 0 ENSG00000131482.9 protein_coding G6PC 1 OTTHUMG00000180657.1 +29881 chr17 ENSEMBL gene 42940575 42940702 128.0 - 0 ENSG00000212149.1 snoRNA RF00561 3 +29882 chr17 HAVANA gene 42950526 42964498 3704.0 - 0 ENSG00000266967.6 protein_coding AARSD1 2 OTTHUMG00000153515.8 overlapping_locus +29883 chr17 HAVANA gene 42968088 42980433 2856.0 - 0 ENSG00000267060.5 protein_coding PTGES3L 2 OTTHUMG00000180906.1 overlapping_locus +29884 chr17 HAVANA gene 42950526 42980528 2383.0 - 0 ENSG00000108825.17 protein_coding PTGES3L-AARSD1 1 OTTHUMG00000180905.2 overlapping_locus +29885 chr17 HAVANA gene 42980565 42993690 4757.0 + 0 ENSG00000198863.7 protein_coding RUNDC1 1 OTTHUMG00000180659.1 +29886 chr17 HAVANA gene 42998273 43002959 2026.0 + 0 ENSG00000131469.14 protein_coding RPL27 2 OTTHUMG00000180660.4 +29887 chr17 HAVANA gene 43006725 43014456 1973.0 + 0 ENSG00000068079.7 protein_coding IFI35 2 OTTHUMG00000167720.1 +29888 chr17 HAVANA gene 43014605 43025123 3501.0 - 0 ENSG00000108828.15 protein_coding VAT1 1 OTTHUMG00000180816.2 +29889 chr17 HAVANA gene 43025241 43032036 4353.0 + 0 ENSG00000108830.9 protein_coding RND2 2 OTTHUMG00000180817.3 +29890 chr17 HAVANA gene 43079302 43079780 479.0 + 0 ENSG00000240828.1 processed_pseudogene RPL21P4 1 OTTHUMG00000157434.1 pseudo_consens +29891 chr17 HAVANA gene 43131208 43131270 63.0 + 0 ENSG00000285057.1 transcribed_unprocessed_pseudogene AC135721.2 2 OTTHUMG00000140395.3 overlapping_locus +29892 chr17 HAVANA gene 43144956 43145255 300.0 + 0 ENSG00000267681.1 transcribed_processed_pseudogene AC135721.1 1 OTTHUMG00000180874.1 pseudo_consens,overlapping_locus +29893 chr17 HAVANA gene 43125610 43153671 2096.0 + 0 ENSG00000198496.11 bidirectional_promoter_lncRNA NBR2 2 OTTHUMG00000192466.1 overlapping_locus +29894 chr17 HAVANA gene 43168170 43168249 80.0 - 0 ENSG00000267595.1 unprocessed_pseudogene AC060780.3 2 OTTHUMG00000180876.1 overlapping_locus +29895 chr17 HAVANA gene 43169880 43170077 198.0 - 0 ENSG00000267340.1 processed_pseudogene AC060780.2 1 OTTHUMG00000180877.1 pseudo_consens,overlapping_locus +29896 chr17 HAVANA gene 43044295 43170245 8922.0 - 0 ENSG00000012048.21 protein_coding BRCA1 2 OTTHUMG00000157426.14 overlapping_locus +29897 chr17 HAVANA gene 43148368 43171037 8246.0 - 0 ENSG00000267002.3 lincRNA AC060780.1 2 OTTHUMG00000180875.3 overlapping_locus +29898 chr17 HAVANA gene 43170481 43211689 8405.0 + 0 ENSG00000188554.13 protein_coding NBR1 1 OTTHUMG00000180878.1 +29899 chr17 HAVANA gene 43211835 43220041 3577.0 + 0 ENSG00000184988.8 protein_coding TMEM106A 2 OTTHUMG00000180879.4 +29900 chr17 ENSEMBL gene 43233787 43233977 191.0 - 0 ENSG00000274585.1 snRNA RNU2-1 3 +29901 chr17 ENSEMBL gene 43239921 43240111 191.0 - 0 ENSG00000275616.1 snRNA RF00004 3 +29902 chr17 ENSEMBL gene 43241180 43241370 191.0 - 0 ENSG00000273709.1 snRNA RF00004 3 +29903 chr17 ENSEMBL gene 43245674 43245864 191.0 - 0 ENSG00000274432.1 snRNA RF00004 3 +29904 chr17 ENSEMBL gene 43251829 43252019 191.0 - 0 ENSG00000278048.1 snRNA RF00004 3 +29905 chr17 ENSEMBL gene 43266633 43266823 191.0 - 0 ENSG00000276596.1 snRNA RF00004 3 +29906 chr17 ENSEMBL gene 43271369 43271559 191.0 - 0 ENSG00000277903.1 snRNA RF00004 3 +29907 chr17 ENSEMBL gene 43273101 43273292 192.0 - 0 ENSG00000278774.1 snRNA RF00004 3 +29908 chr17 ENSEMBL gene 43277978 43278168 191.0 - 0 ENSG00000274862.1 snRNA RF00004 3 +29909 chr17 ENSEMBL gene 43284139 43284329 191.0 - 0 ENSG00000274062.1 snRNA RF00004 3 +29910 chr17 ENSEMBL gene 43290291 43290481 191.0 - 0 ENSG00000274452.1 snRNA RF00004 3 +29911 chr17 ENSEMBL gene 43296425 43296615 191.0 - 0 ENSG00000275219.1 snRNA RF00004 3 +29912 chr17 ENSEMBL gene 43300041 43300231 191.0 - 0 ENSG00000278591.1 snRNA RF00004 3 +29913 chr17 HAVANA gene 43216941 43305397 3282.0 - 0 ENSG00000236383.8 protein_coding CCDC200 2 OTTHUMG00000132641.7 ncRNA_host +29914 chr17 HAVANA gene 43360041 43361361 1321.0 - 0 ENSG00000279602.1 TEC AC109326.1 2 OTTHUMG00000176042.2 +29915 chr17 ENSEMBL gene 43387226 43387417 192.0 - 0 ENSG00000277084.1 snRNA RNU2-4P 3 +29916 chr17 HAVANA gene 43369845 43389199 6895.0 - 0 ENSG00000188825.13 lincRNA LINC00910 2 OTTHUMG00000180880.1 ncRNA_host +29917 chr17 ENSEMBL gene 43395993 43396091 99.0 - 0 ENSG00000252882.1 snRNA RNU6-1137P 3 +29918 chr17 HAVANA gene 43398959 43401137 1612.0 + 0 ENSG00000175906.4 protein_coding ARL4D 2 OTTHUMG00000180881.2 +29919 chr17 ENSEMBL gene 43412427 43412530 104.0 + 0 ENSG00000251763.1 snRNA RNU6-470P 3 +29920 chr17 ENSEMBL gene 43444806 43444885 80.0 + 0 ENSG00000284344.1 miRNA MIR2117 3 +29921 chr17 ENSEMBL gene 43445507 43445613 107.0 + 0 ENSG00000252279.1 snRNA RNU6-406P 3 +29922 chr17 HAVANA gene 43444707 43451200 506.0 + 0 ENSG00000267151.5 lincRNA MIR2117HG 2 OTTHUMG00000180882.1 ncRNA_host +29923 chr17 ENSEMBL gene 43473585 43473690 106.0 + 0 ENSG00000252729.1 snRNA RNU6-971P 3 +29924 chr17 HAVANA gene 43476198 43476665 468.0 + 0 ENSG00000237888.1 processed_pseudogene AC087650.1 1 OTTHUMG00000132639.1 pseudo_consens +29925 chr17 HAVANA gene 43527844 43579620 3607.0 - 0 ENSG00000175832.12 protein_coding ETV4 1 OTTHUMG00000180884.1 +29926 chr17 ENSEMBL gene 43607436 43607723 288.0 - 0 ENSG00000278109.1 misc_RNA RF00017 3 +29927 chr17 HAVANA gene 43483865 43610338 10439.0 + 0 ENSG00000067596.11 protein_coding DHX8 1 OTTHUMG00000180883.5 +29928 chr17 HAVANA gene 43640388 43661954 2707.0 - 0 ENSG00000005102.12 protein_coding MEOX1 2 OTTHUMG00000170513.1 +29929 chr17 HAVANA gene 43680273 43705884 549.0 + 0 ENSG00000267440.1 lincRNA LINC02594 2 OTTHUMG00000180886.1 +29930 chr17 HAVANA gene 43718314 43720436 2123.0 - 0 ENSG00000267253.1 processed_pseudogene AC055813.1 1 OTTHUMG00000180887.1 pseudo_consens +29931 chr17 HAVANA gene 43753731 43758788 2300.0 - 0 ENSG00000167941.2 protein_coding SOST 2 OTTHUMG00000180888.3 +29932 chr17 HAVANA gene 43766121 43778988 5012.0 - 0 ENSG00000108861.8 protein_coding DUSP3 1 OTTHUMG00000180889.1 +29933 chr17 HAVANA gene 43782804 43784682 494.0 - 0 ENSG00000267604.1 antisense AC003098.1 2 OTTHUMG00000180891.1 +29934 chr17 HAVANA gene 43780435 43787612 3753.0 + 0 ENSG00000231256.7 protein_coding CFAP97D1 2 OTTHUMG00000180890.2 +29935 chr17 HAVANA gene 43800799 43833170 4491.0 - 0 ENSG00000161647.18 protein_coding MPP3 2 OTTHUMG00000133838.2 +29936 chr17 HAVANA gene 43847148 43863629 4745.0 + 0 ENSG00000161649.12 protein_coding CD300LG 2 OTTHUMG00000181796.1 +29937 chr17 HAVANA gene 43875357 43909711 6114.0 - 0 ENSG00000108852.14 protein_coding MPP2 1 OTTHUMG00000133840.5 +29938 chr17 HAVANA gene 43917194 43917985 792.0 + 0 ENSG00000267496.4 lincRNA FAM215A 2 OTTHUMG00000181798.1 +29939 chr17 HAVANA gene 43914433 43923001 832.0 - 0 ENSG00000282199.1 antisense AC007993.3 2 OTTHUMG00000191431.1 overlapping_locus +29940 chr17 HAVANA gene 43922775 43927388 2430.0 - 0 ENSG00000267166.5 unprocessed_pseudogene AC007993.1 2 OTTHUMG00000181797.2 overlapping_locus +29941 chr17 HAVANA gene 43927563 43932622 521.0 + 0 ENSG00000267420.1 lincRNA AC007993.2 2 OTTHUMG00000181799.1 +29942 chr17 HAVANA gene 43938363 43938959 434.0 + 0 ENSG00000261514.1 lincRNA LINC01976 2 OTTHUMG00000176999.1 +29943 chr17 HAVANA gene 43940804 43942468 987.0 - 0 ENSG00000108849.7 protein_coding PPY 1 OTTHUMG00000181800.2 +29944 chr17 HAVANA gene 43952738 44004469 1181.0 - 0 ENSG00000131096.10 protein_coding PYY 2 OTTHUMG00000181801.1 +29945 chr17 HAVANA gene 44004546 44009063 2822.0 + 0 ENSG00000161653.10 protein_coding NAGS 2 OTTHUMG00000181802.1 +29946 chr17 HAVANA gene 44011188 44023946 3029.0 - 0 ENSG00000091947.9 protein_coding TMEM101 1 OTTHUMG00000181803.2 +29947 chr17 ENSEMBL gene 44025020 44025223 204.0 - 0 ENSG00000221044.2 snoRNA RF00012 3 +29948 chr17 HAVANA gene 44034635 44067619 2811.0 - 0 ENSG00000161654.9 protein_coding LSM12 1 OTTHUMG00000181804.1 +29949 chr17 HAVANA gene 44070735 44076344 4551.0 + 0 ENSG00000141349.8 protein_coding G6PC3 2 OTTHUMG00000181805.3 +29950 chr17 HAVANA gene 44115912 44120595 359.0 + 0 ENSG00000267638.1 antisense AC023855.1 2 OTTHUMG00000181807.1 +29951 chr17 HAVANA gene 44076746 44123702 7618.0 - 0 ENSG00000108840.15 protein_coding HDAC5 1 OTTHUMG00000181806.2 +29952 chr17 ENSEMBL gene 44135883 44135989 107.0 - 0 ENSG00000212446.1 snRNA RNU6-131P 3 +29953 chr17 HAVANA gene 44141906 44162476 3005.0 + 0 ENSG00000125319.14 protein_coding C17orf53 1 OTTHUMG00000181808.1 +29954 chr17 HAVANA gene 44170447 44179083 2230.0 + 0 ENSG00000161664.6 protein_coding ASB16 2 OTTHUMG00000181809.2 +29955 chr17 HAVANA gene 44175973 44186717 2460.0 - 0 ENSG00000267080.5 antisense ASB16-AS1 2 OTTHUMG00000181810.1 +29956 chr17 HAVANA gene 44186970 44191731 3511.0 + 0 ENSG00000168591.15 protein_coding TMUB2 1 OTTHUMG00000181811.1 +29957 chr17 HAVANA gene 44191805 44200113 5301.0 - 0 ENSG00000087152.15 protein_coding ATXN7L3 2 OTTHUMG00000181812.2 +29958 chr17 ENSEMBL gene 44207771 44207839 69.0 - 0 ENSG00000275107.1 miRNA MIR6782 3 +29959 chr17 HAVANA gene 44198882 44216565 528.0 + 0 ENSG00000267394.1 antisense AC004596.1 2 OTTHUMG00000181813.1 +29960 chr17 HAVANA gene 44205033 44221626 6993.0 - 0 ENSG00000108312.14 protein_coding UBTF 1 OTTHUMG00000167585.5 ncRNA_host +29961 chr17 HAVANA gene 44221401 44223710 2012.0 + 0 ENSG00000260793.2 antisense AC003102.1 2 OTTHUMG00000176046.2 +29962 chr17 HAVANA gene 44228760 44230228 1469.0 - 0 ENSG00000267691.1 processed_pseudogene SHC1P2 1 OTTHUMG00000181814.1 pseudo_consens +29963 chr17 HAVANA gene 44248385 44268141 5287.0 - 0 ENSG00000004939.14 protein_coding SLC4A1 2 OTTHUMG00000156843.2 +29964 chr17 HAVANA gene 44276368 44281182 4061.0 - 0 ENSG00000285486.1 lincRNA AC003043.2 2 OTTHUMG00000192566.1 +29965 chr17 ENSEMBL gene 44290856 44291151 296.0 - 0 ENSG00000239702.3 misc_RNA RN7SL507P 3 +29966 chr17 ENSEMBL gene 44303965 44304203 239.0 + 0 ENSG00000221496.2 snoRNA RF00012 3 +29967 chr17 ENSEMBL gene 44307088 44307172 85.0 + 0 ENSG00000252628.2 snRNA RNU6-453P 3 +29968 chr17 HAVANA gene 44299574 44315315 5403.0 - 0 ENSG00000267750.5 antisense RUNDC3A-AS1 2 OTTHUMG00000132629.2 +29969 chr17 HAVANA gene 44308413 44318671 4905.0 + 0 ENSG00000108309.13 protein_coding RUNDC3A 2 OTTHUMG00000169259.2 +29970 chr17 HAVANA gene 44319625 44324870 3526.0 - 0 ENSG00000013306.15 protein_coding SLC25A39 1 OTTHUMG00000132628.3 +29971 chr17 HAVANA gene 44328613 44331462 337.0 + 0 ENSG00000267211.1 lincRNA AC003043.1 2 OTTHUMG00000181815.1 +29972 chr17 HAVANA gene 44345086 44353102 3680.0 + 0 ENSG00000030582.17 protein_coding GRN 1 OTTHUMG00000181816.3 +29973 chr17 HAVANA gene 44353215 44363875 3592.0 - 0 ENSG00000161682.14 protein_coding FAM171A2 2 OTTHUMG00000132421.3 +29974 chr17 HAVANA gene 44365014 44365751 738.0 - 0 ENSG00000267634.1 processed_pseudogene RPL7L1P5 1 OTTHUMG00000181817.1 pseudo_consens +29975 chr17 HAVANA gene 44372180 44389505 5551.0 - 0 ENSG00000005961.18 protein_coding ITGA2B 2 OTTHUMG00000177935.4 +29976 chr17 ENSEMBL gene 44409059 44409358 300.0 - 0 ENSG00000240589.3 misc_RNA RN7SL258P 3 +29977 chr17 HAVANA gene 44486153 44486815 663.0 - 0 ENSG00000283045.1 sense_intronic AC103703.1 2 OTTHUMG00000191497.1 +29978 chr17 HAVANA gene 44395284 44503430 9734.0 - 0 ENSG00000186566.12 protein_coding GPATCH8 2 OTTHUMG00000181818.4 ncRNA_host +29979 chr17 HAVANA gene 44557459 44559570 2112.0 + 0 ENSG00000180340.6 protein_coding FZD2 2 OTTHUMG00000181819.1 +29980 chr17 HAVANA gene 44596346 44597344 325.0 + 0 ENSG00000271222.1 processed_pseudogene AC091152.3 1 OTTHUMG00000184907.1 pseudo_consens +29981 chr17 HAVANA gene 44645411 44645587 177.0 + 0 ENSG00000267384.3 processed_pseudogene SMCO4P1 2 OTTHUMG00000181820.1 +29982 chr17 HAVANA gene 44646364 44650349 2025.0 - 0 ENSG00000266979.1 lincRNA LINC01180 2 OTTHUMG00000181821.1 +29983 chr17 HAVANA gene 44673689 44676257 2569.0 - 0 ENSG00000267160.1 antisense AC091152.2 2 OTTHUMG00000181823.1 overlapping_locus +29984 chr17 HAVANA gene 44673069 44689779 2855.0 - 0 ENSG00000180329.13 protein_coding CCDC43 1 OTTHUMG00000181822.1 overlapping_locus +29985 chr17 HAVANA gene 44656404 44690308 8609.0 + 0 ENSG00000180336.17 protein_coding MEIOC 1 OTTHUMG00000153039.4 overlapping_locus +29986 chr17 HAVANA gene 44689858 44693340 3483.0 + 0 ENSG00000279879.1 TEC AC091152.4 2 OTTHUMG00000181824.1 overlapping_locus +29987 chr17 ENSEMBL gene 44718861 44719130 270.0 - 0 ENSG00000264251.2 misc_RNA RN7SL819P 3 +29988 chr17 HAVANA gene 44719760 44720597 838.0 - 0 ENSG00000240305.1 processed_pseudogene AC091152.1 1 OTTHUMG00000157853.1 pseudo_consens +29989 chr17 HAVANA gene 44708608 44752264 7146.0 + 0 ENSG00000161692.17 protein_coding DBF4B 2 OTTHUMG00000165717.2 +29990 chr17 HAVANA gene 44759031 44781846 4770.0 + 0 ENSG00000073670.13 protein_coding ADAM11 2 OTTHUMG00000179038.3 +29991 chr17 HAVANA gene 44793199 44794474 562.0 + 0 ENSG00000267505.1 lincRNA AC005180.2 2 OTTHUMG00000179859.1 +29992 chr17 HAVANA gene 44794747 44797783 587.0 - 0 ENSG00000267405.1 lincRNA AC005180.1 2 OTTHUMG00000179860.1 +29993 chr17 HAVANA gene 44798448 44830816 8660.0 - 0 ENSG00000182963.9 protein_coding GJC1 1 OTTHUMG00000179861.4 +29994 chr17 HAVANA gene 44846353 44850480 861.0 + 0 ENSG00000131097.6 protein_coding HIGD1B 1 OTTHUMG00000179864.2 +29995 chr17 ENSEMBL gene 44883986 44884274 289.0 + 0 ENSG00000264540.2 misc_RNA RN7SL405P 3 +29996 chr17 HAVANA gene 44849943 44899662 10375.0 - 0 ENSG00000108883.12 protein_coding EFTUD2 2 OTTHUMG00000179865.3 +29997 chr17 HAVANA gene 44899142 44905390 3895.0 + 0 ENSG00000167131.16 protein_coding CCDC103 1 OTTHUMG00000154264.4 overlapping_locus +29998 chr17 HAVANA gene 44899712 44905390 3459.0 + 0 ENSG00000214447.4 protein_coding FAM187A 2 OTTHUMG00000154266.1 overlapping_locus +29999 chr17 HAVANA gene 44903161 44916937 12110.0 - 0 ENSG00000131095.12 protein_coding GFAP 1 OTTHUMG00000179866.9 +30000 chr17 ENSEMBL gene 44934618 44934681 64.0 - 0 ENSG00000278223.1 miRNA MIR6783 3 +30001 chr17 HAVANA gene 44924709 44947711 4655.0 - 0 ENSG00000186185.13 protein_coding KIF18B 1 OTTHUMG00000179867.1 ncRNA_host +30002 chr17 HAVANA gene 44947912 44948939 1028.0 + 0 ENSG00000267334.1 lincRNA AC015936.1 2 OTTHUMG00000181864.1 +30003 chr17 HAVANA gene 44959693 44968071 1295.0 - 0 ENSG00000131094.3 protein_coding C1QL1 2 OTTHUMG00000162944.3 +30004 chr17 HAVANA gene 44982514 44982772 259.0 + 0 ENSG00000267788.1 lincRNA AC015936.2 2 OTTHUMG00000181886.1 +30005 chr17 HAVANA gene 45023340 45061109 2834.0 - 0 ENSG00000172992.11 protein_coding DCAKD 2 OTTHUMG00000179947.3 +30006 chr17 ENSEMBL gene 45071442 45071543 102.0 + 0 ENSG00000200888.1 misc_RNA RF00019 3 +30007 chr17 HAVANA gene 45051610 45109016 6669.0 + 0 ENSG00000136448.11 protein_coding NMT1 1 OTTHUMG00000180003.2 ncRNA_host +30008 chr17 ENSEMBL gene 45114367 45114433 67.0 - 0 ENSG00000277249.1 miRNA MIR6784 3 +30009 chr17 HAVANA gene 45108967 45133354 6740.0 - 0 ENSG00000161714.11 protein_coding PLCD3 1 OTTHUMG00000168029.6 ncRNA_host +30010 chr17 HAVANA gene 45132600 45144181 3776.0 + 0 ENSG00000181513.14 protein_coding ACBD4 2 OTTHUMG00000180111.2 +30011 chr17 HAVANA gene 45146730 45148470 1741.0 - 0 ENSG00000276728.1 lincRNA AC142472.1 2 OTTHUMG00000186651.1 +30012 chr17 HAVANA gene 45148502 45152101 3600.0 + 0 ENSG00000186834.3 protein_coding HEXIM1 2 OTTHUMG00000180112.2 +30013 chr17 HAVANA gene 45150400 45161510 696.0 - 0 ENSG00000224505.2 antisense AC138150.1 1 OTTHUMG00000132571.2 +30014 chr17 HAVANA gene 45160700 45170040 2038.0 + 0 ENSG00000168517.10 protein_coding HEXIM2 1 OTTHUMG00000180193.2 +30015 chr17 HAVANA gene 45168800 45171584 2381.0 - 0 ENSG00000267288.2 antisense AC138150.2 2 OTTHUMG00000180194.2 +30016 chr17 HAVANA gene 45190931 45222222 3719.0 - 0 ENSG00000267121.5 antisense AC008105.3 2 OTTHUMG00000180195.1 +30017 chr17 HAVANA gene 45238028 45241734 2293.0 - 0 ENSG00000233175.2 antisense AC008105.1 2 OTTHUMG00000180197.1 overlapping_locus +30018 chr17 HAVANA gene 45221444 45247320 7576.0 + 0 ENSG00000184922.13 protein_coding FMNL1 2 OTTHUMG00000180196.4 +30019 chr17 HAVANA gene 45245186 45251129 1649.0 - 0 ENSG00000233483.3 transcribed_unitary_pseudogene AC008105.2 2 OTTHUMG00000180198.3 +30020 chr17 HAVANA gene 45254393 45262112 1946.0 - 0 ENSG00000184361.12 protein_coding SPATA32 2 OTTHUMG00000180363.1 +30021 chr17 HAVANA gene 45247925 45268630 3775.0 + 0 ENSG00000267278.5 antisense MAP3K14-AS1 2 OTTHUMG00000180362.1 +30022 chr17 HAVANA gene 45263119 45317145 5784.0 - 0 ENSG00000006062.15 protein_coding MAP3K14 2 OTTHUMG00000180364.11 +30023 chr17 ENSEMBL gene 45327366 45327497 132.0 - 0 ENSG00000285757.1 rRNA_pseudogene AC003070.7 3 +30024 chr17 ENSEMBL gene 45327366 45327497 132.0 - 0 ENSG00000199953.1 rRNA RNA5SP443 3 +30025 chr17 HAVANA gene 45371402 45372057 386.0 - 0 ENSG00000267446.1 lincRNA AC003070.2 2 OTTHUMG00000180426.1 +30026 chr17 HAVANA gene 45396932 45397477 457.0 + 0 ENSG00000267344.1 antisense AC003070.1 2 OTTHUMG00000180427.1 +30027 chr17 HAVANA gene 45393902 45434421 10426.0 - 0 ENSG00000159314.11 protein_coding ARHGAP27 1 OTTHUMG00000166982.6 +30028 chr17 HAVANA gene 45452844 45464065 769.0 + 0 ENSG00000236234.1 antisense AC091132.2 2 OTTHUMG00000132554.3 +30029 chr17 ENSEMBL gene 45475363 45475435 73.0 - 0 ENSG00000284055.1 miRNA MIR4315-1 3 +30030 chr17 HAVANA gene 45435900 45490749 9233.0 - 0 ENSG00000225190.10 protein_coding PLEKHM1 2 OTTHUMG00000179074.5 ncRNA_host +30031 chr17 ENSEMBL gene 45526466 45526746 281.0 - 0 ENSG00000278770.1 misc_RNA RF00017 3 +30032 chr17 HAVANA gene 45531577 45533838 2262.0 + 0 ENSG00000266918.1 TEC AC091132.3 2 OTTHUMG00000181889.1 +30033 chr17 HAVANA gene 45533963 45534710 547.0 + 0 ENSG00000131484.4 lincRNA AC091132.1 2 OTTHUMG00000180601.1 +30034 chr17 HAVANA gene 45506741 45550335 6924.0 - 0 ENSG00000214425.7 transcribed_unprocessed_pseudogene LRRC37A4P 2 OTTHUMG00000179212.2 overlapping_locus +30035 chr17 HAVANA gene 45549781 45558738 826.0 - 0 ENSG00000267246.1 processed_transcript AC091132.5 2 OTTHUMG00000180603.1 overlapping_locus +30036 chr17 HAVANA gene 45553710 45559070 470.0 - 0 ENSG00000266504.1 transcribed_unprocessed_pseudogene RDM1P1 2 OTTHUMG00000179213.1 overlapping_locus +30037 chr17 HAVANA gene 45545804 45563230 2278.0 + 0 ENSG00000267198.1 lincRNA AC091132.4 2 OTTHUMG00000180602.1 +30038 chr17 HAVANA gene 45585871 45586929 1059.0 + 0 ENSG00000264070.1 processed_pseudogene DND1P1 1 OTTHUMG00000178253.1 pseudo_consens +30039 chr17 HAVANA gene 45586452 45588379 536.0 - 0 ENSG00000285668.1 lincRNA AC126544.2 2 OTTHUMG00000192992.1 +30040 chr17 HAVANA gene 45592621 45593369 749.0 + 0 ENSG00000280022.1 TEC AC126544.1 2 OTTHUMG00000176047.1 +30041 chr17 HAVANA gene 45600869 45602340 1472.0 - 0 ENSG00000263503.1 processed_pseudogene MAPK8IP1P2 1 OTTHUMG00000178260.1 pseudo_consens +30042 chr17 HAVANA gene 45608571 45608918 348.0 + 0 ENSG00000204652.6 processed_pseudogene RPS26P8 2 OTTHUMG00000132555.1 +30043 chr17 HAVANA gene 45620328 45655156 15578.0 + 0 ENSG00000204650.14 transcribed_unitary_pseudogene LINC02210 2 OTTHUMG00000132521.5 overlapping_locus +30044 chr17 HAVANA gene 45731703 45732977 517.0 - 0 ENSG00000265547.1 lincRNA AC217774.1 2 OTTHUMG00000178244.1 +30045 chr17 HAVANA gene 45733353 45734669 560.0 - 0 ENSG00000265964.1 lincRNA AC217774.2 2 OTTHUMG00000178245.1 +30046 chr17 HAVANA gene 45620344 45835826 2771.0 + 0 ENSG00000263715.7 protein_coding LINC02210-CRHR1 2 OTTHUMG00000178270.3 overlapping_locus +30047 chr17 HAVANA gene 45784280 45835828 3285.0 + 0 ENSG00000120088.14 protein_coding CRHR1 2 OTTHUMG00000178271.8 overlapping_locus +30048 chr17 HAVANA gene 45844835 45847072 2238.0 + 0 ENSG00000185294.6 protein_coding SPPL2C 2 OTTHUMG00000178247.1 retrogene +30049 chr17 HAVANA gene 45799390 45895680 7150.0 - 0 ENSG00000264589.3 antisense MAPT-AS1 2 OTTHUMG00000178246.5 +30050 chr17 HAVANA gene 45895783 45898798 3016.0 + 0 ENSG00000279685.2 sense_intronic MAPT-IT1 2 OTTHUMG00000177993.2 overlapping_locus +30051 chr17 HAVANA gene 45907670 45910779 759.0 - 0 ENSG00000262881.1 antisense CR936218.2 2 OTTHUMG00000178025.1 +30052 chr17 ENSEMBL gene 45931806 45932083 278.0 + 0 ENSG00000274883.1 misc_RNA RF00017 3 +30053 chr17 HAVANA gene 45999250 45999694 445.0 + 0 ENSG00000256762.1 protein_coding STH 2 OTTHUMG00000168633.1 overlapping_locus +30054 chr17 HAVANA gene 45894382 46028334 14920.0 + 0 ENSG00000186868.15 protein_coding MAPT 2 OTTHUMG00000168833.6 ncRNA_host,overlapping_locus +30055 chr17 HAVANA gene 46035313 46035770 304.0 + 0 ENSG00000262372.1 antisense CR936218.1 2 OTTHUMG00000178027.1 +30056 chr17 HAVANA gene 46193576 46196723 976.0 + 0 ENSG00000214401.4 antisense KANSL1-AS1 2 OTTHUMG00000178028.2 +30057 chr17 ENSEMBL gene 46215070 46215171 102.0 - 0 ENSG00000238723.1 misc_RNA RF00019 3 +30058 chr17 HAVANA gene 46029916 46225389 23829.0 - 0 ENSG00000120071.14 protein_coding KANSL1 1 OTTHUMG00000178026.11 ncRNA_host +30059 chr17 HAVANA gene 46243606 46245044 1439.0 + 0 ENSG00000262500.1 processed_pseudogene MAPK8IP1P1 1 OTTHUMG00000178029.1 pseudo_consens +30060 chr17 HAVANA gene 46259551 46260606 1056.0 - 0 ENSG00000262539.1 processed_pseudogene AC005829.2 1 OTTHUMG00000178030.1 pseudo_consens +30061 chr17 HAVANA gene 46267037 46268694 674.0 + 0 ENSG00000261575.2 transcribed_unprocessed_pseudogene AC005829.1 2 OTTHUMG00000176050.2 +30062 chr17 ENSEMBL gene 46319679 46319959 281.0 + 0 ENSG00000265411.1 misc_RNA RN7SL656P 3 +30063 chr17 HAVANA gene 46292733 46337794 6506.0 + 0 ENSG00000176681.14 protein_coding LRRC37A 2 OTTHUMG00000149841.4 ncRNA_host +30064 chr17 HAVANA gene 46274784 46361797 4219.0 - 0 ENSG00000228696.8 protein_coding ARL17B 2 OTTHUMG00000178031.1 +30065 chr17 HAVANA gene 46372855 46487141 1471.0 + 0 ENSG00000260075.1 unprocessed_pseudogene NSFP1 2 OTTHUMG00000177127.6 +30066 chr17 HAVANA gene 46503946 46509339 470.0 + 0 ENSG00000266497.1 unprocessed_pseudogene RDM1P2 2 OTTHUMG00000179214.1 +30067 chr17 ENSEMBL gene 46537534 46537814 281.0 + 0 ENSG00000265315.1 misc_RNA RN7SL199P 3 +30068 chr17 HAVANA gene 46511511 46555650 6756.0 + 0 ENSG00000238083.7 protein_coding LRRC37A2 2 OTTHUMG00000178032.2 ncRNA_host +30069 chr17 HAVANA gene 46558830 46562795 2183.0 - 0 ENSG00000232300.1 lincRNA FAM215B 2 OTTHUMG00000190258.1 +30070 chr17 HAVANA gene 46516702 46579682 5211.0 - 0 ENSG00000185829.17 protein_coding ARL17A 2 OTTHUMG00000132817.4 +30071 chr17 HAVANA gene 46721582 46722167 586.0 - 0 ENSG00000213326.4 processed_pseudogene RPS7P11 1 OTTHUMG00000157855.2 pseudo_consens +30072 chr17 HAVANA gene 46590669 46757464 5005.0 + 0 ENSG00000073969.18 protein_coding NSF 2 OTTHUMG00000134315.6 +30073 chr17 HAVANA gene 46762506 46833154 4334.0 - 0 ENSG00000108379.9 protein_coding WNT3 2 OTTHUMG00000178076.1 +30074 chr17 HAVANA gene 46833201 46886730 3313.0 + 0 ENSG00000158955.10 protein_coding WNT9B 2 OTTHUMG00000178077.2 +30075 chr17 HAVANA gene 46909742 46911512 494.0 - 0 ENSG00000262031.1 lincRNA LINC01974 2 OTTHUMG00000178078.1 +30076 chr17 ENSEMBL gene 46921124 46921249 126.0 + 0 ENSG00000210709.1 snRNA RNU6ATAC3P 3 +30077 chr17 HAVANA gene 46916770 46923034 395.0 - 0 ENSG00000261886.1 lincRNA AC005670.1 2 OTTHUMG00000178079.1 +30078 chr17 ENSEMBL gene 46973017 46973100 84.0 + 0 ENSG00000264999.1 miRNA MIR5089 3 +30079 chr17 HAVANA gene 46923075 46975524 14366.0 + 0 ENSG00000108433.16 protein_coding GOSR2 2 OTTHUMG00000178080.8 ncRNA_host,overlapping_locus +30080 chr17 HAVANA gene 46978156 46979248 1093.0 - 0 ENSG00000179673.4 protein_coding RPRML 2 OTTHUMG00000178187.1 +30081 chr17 ENSEMBL gene 47041825 47042105 281.0 + 0 ENSG00000277198.1 misc_RNA RN7SL270P 3 +30082 chr17 HAVANA gene 46923133 47049932 1876.0 + 0 ENSG00000262633.2 protein_coding AC005670.2 2 OTTHUMG00000178081.2 ncRNA_host,overlapping_locus +30083 chr17 HAVANA gene 46978481 47054569 5074.0 + 0 ENSG00000263142.5 transcribed_unprocessed_pseudogene LRRC37A17P 2 OTTHUMG00000178082.1 overlapping_locus +30084 chr17 HAVANA gene 46984045 47100323 3348.0 - 0 ENSG00000262879.5 processed_transcript AC068152.1 2 OTTHUMG00000178188.1 +30085 chr17 HAVANA gene 47159191 47159993 803.0 - 0 ENSG00000239291.1 processed_pseudogene AC002558.1 1 OTTHUMG00000157875.1 pseudo_consens,overlapping_locus +30086 chr17 HAVANA gene 47160398 47167723 1873.0 - 0 ENSG00000262265.2 sense_intronic AC002558.3 2 OTTHUMG00000178230.2 overlapping_locus +30087 chr17 HAVANA gene 47169826 47171049 673.0 + 0 ENSG00000261872.1 antisense AC002558.2 2 OTTHUMG00000178231.1 +30088 chr17 HAVANA gene 47117703 47189422 6824.0 - 0 ENSG00000004897.11 protein_coding CDC27 2 OTTHUMG00000166429.7 overlapping_locus +30089 chr17 HAVANA gene 47200446 47223679 1636.0 + 0 ENSG00000198336.9 protein_coding MYL4 1 OTTHUMG00000178232.2 +30090 chr17 ENSEMBL gene 47259358 47259420 63.0 - 0 ENSG00000238419.1 snRNA RNU7-186P 3 +30091 chr17 HAVANA gene 47279526 47280047 522.0 - 0 ENSG00000276790.1 antisense AC068234.2 2 OTTHUMG00000186652.1 +30092 chr17 HAVANA gene 47253846 47311816 4394.0 + 0 ENSG00000259207.7 protein_coding ITGB3 2 OTTHUMG00000171956.5 overlapping_locus +30093 chr17 HAVANA gene 47303460 47323613 713.0 - 0 ENSG00000263293.2 antisense THCAT158 2 OTTHUMG00000178233.2 +30094 chr17 HAVANA gene 47253897 47344292 2785.0 + 0 ENSG00000259753.1 protein_coding AC068234.1 2 OTTHUMG00000171957.3 overlapping_locus +30095 chr17 HAVANA gene 47409322 47423526 513.0 - 0 ENSG00000253347.1 antisense AC040934.1 2 OTTHUMG00000164768.1 +30096 chr17 HAVANA gene 47323290 47441312 6672.0 + 0 ENSG00000178852.15 protein_coding EFCAB13 1 OTTHUMG00000164767.6 overlapping_locus +30097 chr17 HAVANA gene 47450568 47492492 2098.0 - 0 ENSG00000228782.7 transcribed_unprocessed_pseudogene MRPL45P2 2 OTTHUMG00000178238.2 +30098 chr17 ENSEMBL gene 47557413 47557514 102.0 + 0 ENSG00000206734.1 misc_RNA RF00019 3 +30099 chr17 HAVANA gene 47522942 47623276 11514.0 + 0 ENSG00000141279.15 protein_coding NPEPPS 2 OTTHUMG00000165471.6 ncRNA_host +30100 chr17 HAVANA gene 47603860 47649420 1242.0 - 0 ENSG00000263766.5 antisense AC025682.1 2 OTTHUMG00000178284.1 +30101 chr17 HAVANA gene 47682417 47682683 267.0 - 0 ENSG00000264558.1 antisense AC015674.1 2 OTTHUMG00000178285.1 +30102 chr17 HAVANA gene 47649476 47685505 7678.0 + 0 ENSG00000108424.9 protein_coding KPNB1 1 OTTHUMG00000036957.4 +30103 chr17 HAVANA gene 47694081 47712050 4280.0 + 0 ENSG00000198933.9 protein_coding TBKBP1 2 OTTHUMG00000178286.2 +30104 chr17 HAVANA gene 47733244 47746119 2614.0 + 0 ENSG00000073861.2 protein_coding TBX21 2 OTTHUMG00000178287.1 +30105 chr17 HAVANA gene 47807372 47821834 6572.0 - 0 ENSG00000006025.11 protein_coding OSBPL7 2 OTTHUMG00000178288.1 +30106 chr17 HAVANA gene 47823272 47831534 2764.0 - 0 ENSG00000159111.12 protein_coding MRPL10 2 OTTHUMG00000156302.1 +30107 chr17 HAVANA gene 47831627 47837713 2820.0 + 0 ENSG00000141294.9 protein_coding LRRC46 2 OTTHUMG00000178289.1 +30108 chr17 HAVANA gene 47837692 47841333 3043.0 - 0 ENSG00000141295.13 protein_coding SCRN2 1 OTTHUMG00000178290.2 +30109 chr17 HAVANA gene 47844908 47855874 4075.0 - 0 ENSG00000189120.4 protein_coding SP6 2 OTTHUMG00000132067.3 +30110 chr17 HAVANA gene 47863342 47865190 816.0 + 0 ENSG00000264243.1 lincRNA AC018521.3 2 OTTHUMG00000178291.1 +30111 chr17 HAVANA gene 47879472 47882398 2927.0 - 0 ENSG00000266821.1 lincRNA AC018521.7 2 OTTHUMG00000178292.1 +30112 chr17 HAVANA gene 47891255 47895812 4286.0 - 0 ENSG00000264920.1 processed_transcript AC018521.5 2 OTTHUMG00000178293.1 +30113 chr17 HAVANA gene 47896150 47928957 3598.0 + 0 ENSG00000167182.14 protein_coding SP2 2 OTTHUMG00000150196.3 +30114 chr17 HAVANA gene 47929682 47933106 335.0 - 0 ENSG00000266601.1 antisense AC018521.6 2 OTTHUMG00000178294.1 overlapping_locus +30115 chr17 HAVANA gene 47897330 47941410 2531.0 - 0 ENSG00000234494.7 antisense SP2-AS1 2 OTTHUMG00000132519.4 overlapping_locus +30116 chr17 HAVANA gene 47946802 47948275 527.0 - 0 ENSG00000264019.1 antisense AC018521.2 2 OTTHUMG00000178296.1 +30117 chr17 HAVANA gene 47941506 47949308 5226.0 + 0 ENSG00000108439.10 protein_coding PNPO 1 OTTHUMG00000178295.4 overlapping_locus +30118 chr17 HAVANA gene 47951967 47957878 1519.0 - 0 ENSG00000167183.2 protein_coding PRR15L 2 OTTHUMG00000178297.1 +30119 chr17 HAVANA gene 47945424 47981736 2801.0 + 0 ENSG00000263798.2 processed_transcript AC018521.1 2 OTTHUMG00000178681.2 overlapping_locus +30120 chr17 HAVANA gene 47967810 47981774 6070.0 + 0 ENSG00000108465.14 protein_coding CDK5RAP3 1 OTTHUMG00000178682.3 overlapping_locus +30121 chr17 HAVANA gene 47980398 47996196 531.0 - 0 ENSG00000264701.1 antisense AC018521.4 2 OTTHUMG00000178683.1 +30122 chr17 ENSEMBL gene 48037161 48037247 87.0 - 0 ENSG00000207947.3 miRNA MIR152 3 +30123 chr17 HAVANA gene 48026167 48038030 1851.0 - 0 ENSG00000005243.9 protein_coding COPZ2 2 OTTHUMG00000178684.5 ncRNA_host +30124 chr17 HAVANA gene 48045141 48048073 2933.0 - 0 ENSG00000263412.1 processed_transcript AC004477.1 2 OTTHUMG00000178705.1 +30125 chr17 HAVANA gene 48060383 48060669 192.0 - 0 ENSG00000266341.1 antisense AC004477.2 2 OTTHUMG00000178707.1 +30126 chr17 HAVANA gene 48048329 48061487 5825.0 + 0 ENSG00000082641.15 protein_coding NFE2L1 1 OTTHUMG00000178706.4 +30127 chr17 HAVANA gene 48066704 48067293 590.0 - 0 ENSG00000278765.1 lincRNA AC004477.3 2 OTTHUMG00000186653.1 +30128 chr17 ENSEMBL gene 48088678 48088784 107.0 - 0 ENSG00000206954.1 snRNA RNU6-1201P 3 +30129 chr17 HAVANA gene 48070052 48101521 3087.0 - 0 ENSG00000108468.14 protein_coding CBX1 2 OTTHUMG00000150417.4 ncRNA_host +30130 chr17 HAVANA gene 48103357 48123074 3606.0 + 0 ENSG00000002919.14 protein_coding SNX11 2 OTTHUMG00000178822.2 +30131 chr17 ENSEMBL gene 48156427 48156511 85.0 - 0 ENSG00000221739.1 miRNA MIR1203 3 +30132 chr17 ENSEMBL gene 48196680 48196786 107.0 - 0 ENSG00000207306.1 snRNA RNU6-1152P 3 +30133 chr17 HAVANA gene 48185938 48204529 687.0 + 0 ENSG00000263787.1 antisense SKAP1-AS1 2 OTTHUMG00000178825.1 +30134 chr17 HAVANA gene 48294335 48308762 1570.0 + 0 ENSG00000235300.4 antisense THRA1/BTR 2 OTTHUMG00000132087.3 +30135 chr17 HAVANA gene 48377262 48380370 333.0 - 0 ENSG00000266222.1 sense_intronic AC036222.2 2 OTTHUMG00000178826.1 overlapping_locus +30136 chr17 ENSEMBL gene 48382371 48382586 216.0 - 0 ENSG00000200538.2 snoRNA RF00012 3 +30137 chr17 HAVANA gene 48133440 48430275 2648.0 - 0 ENSG00000141293.15 protein_coding SKAP1 2 OTTHUMG00000178823.2 ncRNA_host,overlapping_locus +30138 chr17 HAVANA gene 48460370 48466040 701.0 + 0 ENSG00000264451.1 lincRNA AC036222.1 2 OTTHUMG00000178827.1 +30139 chr17 ENSEMBL gene 48479097 48479198 102.0 + 0 ENSG00000206805.1 misc_RNA RF00019 3 +30140 chr17 HAVANA gene 48528526 48531001 2476.0 - 0 ENSG00000120094.7 protein_coding HOXB1 2 OTTHUMG00000159929.4 +30141 chr17 HAVANA gene 48540894 48544989 2336.0 - 0 ENSG00000173917.10 protein_coding HOXB2 2 OTTHUMG00000159930.4 +30142 chr17 HAVANA gene 48543551 48551250 1559.0 + 0 ENSG00000230148.8 antisense HOXB-AS1 2 OTTHUMG00000132491.5 overlapping_locus +30143 chr17 HAVANA gene 48557262 48560333 845.0 + 0 ENSG00000239552.2 antisense HOXB-AS2 2 OTTHUMG00000159921.2 overlapping_locus +30144 chr17 ENSEMBL gene 48579838 48579947 110.0 - 0 ENSG00000284038.1 miRNA MIR10A 3 +30145 chr17 HAVANA gene 48575513 48580111 3757.0 - 0 ENSG00000182742.5 protein_coding HOXB4 2 OTTHUMG00000159920.2 ncRNA_host,overlapping_locus +30146 chr17 HAVANA gene 48579630 48582259 2630.0 - 0 ENSG00000257178.5 sense_intronic AC103702.1 2 OTTHUMG00000170223.1 ncRNA_host,overlapping_locus +30147 chr17 HAVANA gene 48591257 48593961 2041.0 - 0 ENSG00000120075.5 protein_coding HOXB5 2 OTTHUMG00000159913.2 overlapping_locus +30148 chr17 HAVANA gene 48548870 48604912 7456.0 - 0 ENSG00000120093.11 protein_coding HOXB3 1 OTTHUMG00000159922.4 ncRNA_host,overlapping_locus +30149 chr17 HAVANA gene 48595751 48604992 2604.0 - 0 ENSG00000108511.9 protein_coding HOXB6 2 OTTHUMG00000159912.5 overlapping_locus +30150 chr17 HAVANA gene 48549630 48606414 1913.0 + 0 ENSG00000233101.10 antisense HOXB-AS3 2 OTTHUMG00000159919.3 overlapping_locus +30151 chr17 HAVANA gene 48611377 48614939 2051.0 - 0 ENSG00000120068.6 protein_coding HOXB8 2 OTTHUMG00000159904.3 overlapping_locus +30152 chr17 HAVANA gene 48621159 48626356 2581.0 - 0 ENSG00000170689.9 protein_coding HOXB9 1 OTTHUMG00000159907.3 overlapping_locus +30153 chr17 ENSEMBL gene 48632490 48632559 70.0 - 0 ENSG00000210741.1 miRNA MIR196A1 3 +30154 chr17 HAVANA gene 48607227 48633572 1528.0 - 0 ENSG00000260027.4 protein_coding HOXB7 2 OTTHUMG00000170231.4 ncRNA_host,overlapping_locus +30155 chr17 HAVANA gene 48628675 48634932 669.0 + 0 ENSG00000242207.1 antisense HOXB-AS4 2 OTTHUMG00000159902.1 +30156 chr17 HAVANA gene 48635923 48647023 1596.0 - 0 ENSG00000272763.1 lincRNA AC103702.2 2 OTTHUMG00000185832.1 +30157 chr17 HAVANA gene 48690481 48690624 144.0 - 0 ENSG00000244559.1 processed_pseudogene AC091179.2 1 OTTHUMG00000157877.1 pseudo_consens +30158 chr17 HAVANA gene 48691116 48691694 579.0 - 0 ENSG00000242067.1 processed_pseudogene RPL9P28 1 OTTHUMG00000157876.1 pseudo_consens +30159 chr17 HAVANA gene 48646923 48707346 3858.0 + 0 ENSG00000244649.4 lincRNA LINC02086 1 OTTHUMG00000159905.3 +30160 chr17 HAVANA gene 48713730 48713959 230.0 + 0 ENSG00000241788.2 processed_pseudogene COX6B1P2 1 OTTHUMG00000159901.2 pseudo_consens +30161 chr17 HAVANA gene 48721719 48722522 386.0 - 0 ENSG00000159182.4 protein_coding PRAC1 2 OTTHUMG00000159899.2 +30162 chr17 ENSEMBL gene 48723188 48723314 127.0 + 0 ENSG00000273750.1 misc_RNA RF02132 3 +30163 chr17 ENSEMBL gene 48723692 48723772 81.0 + 0 ENSG00000277542.1 misc_RNA RF02133 3 +30164 chr17 ENSEMBL gene 48724408 48724475 68.0 - 0 ENSG00000263602.1 miRNA MIR3185 3 +30165 chr17 HAVANA gene 48723168 48724758 657.0 + 0 ENSG00000229637.3 protein_coding PRAC2 2 OTTHUMG00000132085.3 ncRNA_host +30166 chr17 HAVANA gene 48724763 48729178 3467.0 - 0 ENSG00000159184.7 protein_coding HOXB13 2 OTTHUMG00000159900.3 +30167 chr17 HAVANA gene 48733091 48733888 532.0 + 0 ENSG00000242407.1 lincRNA AC091179.1 2 OTTHUMG00000159903.1 +30168 chr17 ENSEMBL gene 48765554 48765847 294.0 - 0 ENSG00000244514.3 misc_RNA RN7SL125P 3 +30169 chr17 HAVANA gene 48762235 48817214 5097.0 - 0 ENSG00000170703.15 protein_coding TTLL6 2 OTTHUMG00000156978.5 ncRNA_host +30170 chr17 HAVANA gene 48830988 48866522 8333.0 + 0 ENSG00000136436.14 protein_coding CALCOCO2 1 OTTHUMG00000160505.6 +30171 chr17 ENSEMBL gene 48880840 48880967 128.0 + 0 ENSG00000212565.1 snoRNA RF00263 3 +30172 chr17 HAVANA gene 48881122 48881316 195.0 + 0 ENSG00000248895.1 processed_pseudogene AC068531.1 1 OTTHUMG00000160510.1 pseudo_consens +30173 chr17 HAVANA gene 48892765 48895871 2615.0 + 0 ENSG00000159199.13 protein_coding ATP5MC1 2 OTTHUMG00000160520.4 +30174 chr17 HAVANA gene 48899131 48899748 301.0 + 0 ENSG00000270781.1 processed_pseudogene AC091133.5 1 OTTHUMG00000184905.1 pseudo_consens +30175 chr17 HAVANA gene 48874860 48908983 897.0 - 0 ENSG00000248278.1 transcribed_processed_pseudogene SUMO2P17 1 OTTHUMG00000160509.2 pseudo_consens +30176 chr17 HAVANA gene 48908369 48929056 5753.0 + 0 ENSG00000159202.17 protein_coding UBE2Z 2 OTTHUMG00000150521.6 +30177 chr17 HAVANA gene 48931791 48937100 483.0 + 0 ENSG00000230532.1 antisense AC091133.1 2 OTTHUMG00000132443.1 +30178 chr17 HAVANA gene 48929316 48945117 5270.0 - 0 ENSG00000159210.9 protein_coding SNF8 2 OTTHUMG00000160569.4 +30179 chr17 ENSEMBL gene 48949361 48949520 160.0 - 0 ENSG00000200903.1 snRNA RNU1-42P 3 +30180 chr17 ENSEMBL gene 48956650 48956753 104.0 - 0 ENSG00000238804.1 snoRNA RF01210 3 +30181 chr17 HAVANA gene 48958554 48968596 716.0 - 0 ENSG00000159224.4 protein_coding GIP 2 OTTHUMG00000161171.1 +30182 chr17 HAVANA gene 48995266 48997492 428.0 - 0 ENSG00000250838.1 antisense AC091133.2 1 OTTHUMG00000161174.1 +30183 chr17 HAVANA gene 49004731 49013725 432.0 - 0 ENSG00000251461.3 antisense AC091133.3 2 OTTHUMG00000161175.3 +30184 chr17 ENSEMBL gene 49017793 49018061 269.0 - 0 ENSG00000255851.2 misc_RNA RF00017 3 +30185 chr17 ENSEMBL gene 49036352 49036455 104.0 + 0 ENSG00000252636.1 snRNA RNU6-826P 3 +30186 chr17 HAVANA gene 49037122 49037429 308.0 + 0 ENSG00000251550.1 processed_pseudogene AC091133.4 1 OTTHUMG00000161237.1 pseudo_consens,overlapping_locus +30187 chr17 HAVANA gene 48997412 49055650 9109.0 + 0 ENSG00000159217.9 protein_coding IGF2BP1 2 OTTHUMG00000161173.2 ncRNA_host,overlapping_locus +30188 chr17 HAVANA gene 49085511 49086702 307.0 + 0 ENSG00000248883.2 unprocessed_pseudogene B4GALNT2P1 2 OTTHUMG00000161236.2 +30189 chr17 HAVANA gene 49148339 49149111 468.0 - 0 ENSG00000240995.2 processed_pseudogene AC069454.1 1 OTTHUMG00000157878.2 pseudo_consens +30190 chr17 HAVANA gene 49132460 49176840 8961.0 + 0 ENSG00000167080.8 protein_coding B4GALNT2 2 OTTHUMG00000161307.2 +30191 chr17 HAVANA gene 49202791 49210574 1689.0 - 0 ENSG00000167083.6 protein_coding GNGT2 2 OTTHUMG00000161308.2 +30192 chr17 HAVANA gene 49210227 49223225 2456.0 + 0 ENSG00000108798.8 protein_coding ABI3 2 OTTHUMG00000161306.2 +30193 chr17 HAVANA gene 49223362 49230766 2375.0 - 0 ENSG00000173868.11 protein_coding PHOSPHO1 1 OTTHUMG00000161305.4 +30194 chr17 HAVANA gene 49248239 49258662 2567.0 + 0 ENSG00000177369.8 processed_transcript FLJ40194 1 OTTHUMG00000161323.1 +30195 chr17 ENSEMBL gene 49288346 49288454 109.0 - 0 ENSG00000273500.1 miRNA MIR6129 3 +30196 chr17 HAVANA gene 49289206 49362473 8810.0 - 0 ENSG00000198740.8 protein_coding ZNF652 2 OTTHUMG00000161322.2 +30197 chr17 HAVANA gene 49361165 49369998 881.0 + 0 ENSG00000248714.6 lincRNA AC091180.2 2 OTTHUMG00000161365.1 +30198 chr17 HAVANA gene 49375380 49380094 245.0 + 0 ENSG00000250948.1 antisense AC091180.4 1 OTTHUMG00000161364.1 overlapping_locus +30199 chr17 HAVANA gene 49400429 49400800 372.0 - 0 ENSG00000186244.7 processed_pseudogene AC091180.1 1 OTTHUMG00000157879.1 pseudo_consens +30200 chr17 HAVANA gene 49404081 49405197 963.0 + 0 ENSG00000250186.3 antisense AC091180.3 2 OTTHUMG00000161492.2 overlapping_locus +30201 chr17 HAVANA gene 49404049 49414905 3838.0 - 0 ENSG00000167085.11 protein_coding PHB 2 OTTHUMG00000134271.10 +30202 chr17 ENSEMBL gene 49416744 49416850 107.0 - 0 ENSG00000207127.1 misc_RNA RF00019 3 +30203 chr17 HAVANA gene 49424269 49424922 654.0 - 0 ENSG00000229944.3 processed_pseudogene EIF4EP2 1 OTTHUMG00000132439.1 pseudo_consens +30204 chr17 HAVANA gene 49457861 49461749 1754.0 - 0 ENSG00000249497.1 lincRNA LINC02075 2 OTTHUMG00000161494.1 +30205 chr17 HAVANA gene 49370740 49476988 382.0 + 0 ENSG00000262039.1 antisense AC091180.5 1 OTTHUMG00000177919.1 overlapping_locus +30206 chr17 HAVANA gene 49494223 49497800 3578.0 - 0 ENSG00000279036.1 TEC AC015656.1 2 OTTHUMG00000177920.1 +30207 chr17 ENSEMBL gene 49510817 49510900 84.0 + 0 ENSG00000277478.1 miRNA MIR6165 3 +30208 chr17 HAVANA gene 49495293 49515017 4150.0 + 0 ENSG00000064300.8 protein_coding NGFR 1 OTTHUMG00000161495.3 ncRNA_host +30209 chr17 HAVANA gene 49505657 49574064 1221.0 - 0 ENSG00000249906.1 antisense AC006487.1 2 OTTHUMG00000161498.1 overlapping_locus +30210 chr17 HAVANA gene 49544788 49577962 893.0 - 0 ENSG00000250310.2 antisense AC006487.2 2 OTTHUMG00000161497.2 overlapping_locus +30211 chr17 HAVANA gene 49575858 49583827 5648.0 + 0 ENSG00000182575.7 protein_coding NXPH3 1 OTTHUMG00000161491.2 +30212 chr17 HAVANA gene 49598884 49678234 6380.0 - 0 ENSG00000121067.17 protein_coding SPOP 2 OTTHUMG00000161496.17 +30213 chr17 HAVANA gene 49700934 49709014 5928.0 - 0 ENSG00000121073.14 protein_coding SLC35B1 1 OTTHUMG00000161638.12 +30214 chr17 HAVANA gene 49708334 49720060 575.0 + 0 ENSG00000250751.1 antisense AC015795.1 1 OTTHUMG00000161697.1 +30215 chr17 HAVANA gene 49710332 49789180 3836.0 - 0 ENSG00000121104.7 protein_coding FAM117A 1 OTTHUMG00000161696.3 +30216 chr17 HAVANA gene 49795343 49795669 327.0 + 0 ENSG00000235183.3 processed_pseudogene SRP14P3 1 OTTHUMG00000161831.1 pseudo_consens,overlapping_locus +30217 chr17 HAVANA gene 49788555 49835030 11749.0 + 0 ENSG00000136504.11 protein_coding KAT7 1 OTTHUMG00000161770.6 overlapping_locus +30218 chr17 HAVANA gene 49834239 49836454 416.0 + 0 ENSG00000262837.1 lincRNA AC027801.4 1 OTTHUMG00000177975.1 overlapping_locus +30219 chr17 HAVANA gene 49838309 49848017 1001.0 - 0 ENSG00000176358.15 protein_coding TAC4 2 OTTHUMG00000161830.2 +30220 chr17 HAVANA gene 49845910 49848837 2100.0 + 0 ENSG00000204584.1 antisense FLJ45513 2 OTTHUMG00000161829.1 +30221 chr17 HAVANA gene 49887598 49900893 1816.0 + 0 ENSG00000248954.1 lincRNA AC027801.1 2 OTTHUMG00000161832.1 +30222 chr17 HAVANA gene 49914403 49932918 395.0 + 0 ENSG00000254039.1 lincRNA AC027801.3 1 OTTHUMG00000163965.1 +30223 chr17 HAVANA gene 49939122 49939819 698.0 + 0 ENSG00000249176.1 processed_pseudogene AC027801.2 1 OTTHUMG00000161828.1 pseudo_consens +30224 chr17 ENSEMBL gene 49966075 49966176 102.0 - 0 ENSG00000199492.1 snRNA RNU6-1313P 3 +30225 chr17 HAVANA gene 49968970 49974959 3644.0 + 0 ENSG00000108813.10 protein_coding DLX4 1 OTTHUMG00000161839.6 +30226 chr17 HAVANA gene 49990005 49995224 2715.0 - 0 ENSG00000064195.7 protein_coding DLX3 2 OTTHUMG00000161892.2 +30227 chr17 HAVANA gene 49996889 50016844 586.0 + 0 ENSG00000248172.1 lincRNA AC009720.1 2 OTTHUMG00000161893.1 +30228 chr17 HAVANA gene 50050349 50055739 2533.0 - 0 ENSG00000246640.1 lincRNA PICART1 2 OTTHUMG00000161891.1 +30229 chr17 HAVANA gene 50055968 50090481 9802.0 + 0 ENSG00000005884.17 protein_coding ITGA3 2 OTTHUMG00000161890.6 +30230 chr17 HAVANA gene 50094065 50094647 583.0 + 0 ENSG00000276851.1 lincRNA AC002401.4 2 OTTHUMG00000186661.1 +30231 chr17 HAVANA gene 50098460 50098899 440.0 - 0 ENSG00000275025.1 antisense AC002401.3 2 OTTHUMG00000186662.1 +30232 chr17 HAVANA gene 50100704 50101920 430.0 - 0 ENSG00000250282.1 antisense AC002401.2 1 OTTHUMG00000161991.1 +30233 chr17 HAVANA gene 50094737 50112152 5481.0 + 0 ENSG00000005882.11 protein_coding PDK2 1 OTTHUMG00000161948.17 +30234 chr17 HAVANA gene 50110040 50129882 7016.0 - 0 ENSG00000167100.14 protein_coding SAMD14 2 OTTHUMG00000161992.4 +30235 chr17 HAVANA gene 50135586 50146176 468.0 + 0 ENSG00000236472.1 antisense AC002401.1 2 OTTHUMG00000132433.1 +30236 chr17 HAVANA gene 50133735 50150630 4298.0 - 0 ENSG00000108819.10 protein_coding PPP1R9B 2 OTTHUMG00000162008.6 +30237 chr17 HAVANA gene 50158333 50161276 547.0 - 0 ENSG00000253730.1 antisense AC015909.2 1 OTTHUMG00000163971.1 +30238 chr17 HAVANA gene 50163523 50165316 1794.0 - 0 ENSG00000261959.1 antisense AC015909.3 2 OTTHUMG00000177977.1 +30239 chr17 HAVANA gene 50164214 50175931 2452.0 + 0 ENSG00000108823.15 protein_coding SGCA 1 OTTHUMG00000162024.3 +30240 chr17 HAVANA gene 50171428 50181178 1219.0 - 0 ENSG00000188662.6 transcribed_unitary_pseudogene HILS1 2 OTTHUMG00000162025.2 +30241 chr17 HAVANA gene 50183289 50201632 9819.0 - 0 ENSG00000108821.13 protein_coding COL1A1 2 OTTHUMG00000148674.9 +30242 chr17 HAVANA gene 50212933 50215357 578.0 - 0 ENSG00000263176.1 lincRNA AC015909.4 2 OTTHUMG00000177978.1 +30243 chr17 HAVANA gene 50208944 50215922 2240.0 + 0 ENSG00000249406.2 lincRNA AC015909.1 2 OTTHUMG00000162055.2 +30244 chr17 HAVANA gene 50235845 50236129 285.0 + 0 ENSG00000249838.1 processed_pseudogene SUMO2P7 1 OTTHUMG00000162059.1 pseudo_consens +30245 chr17 HAVANA gene 50271406 50281485 3101.0 + 0 ENSG00000167105.7 protein_coding TMEM92 2 OTTHUMG00000162060.3 +30246 chr17 HAVANA gene 50281577 50287855 750.0 - 0 ENSG00000251179.1 antisense TMEM92-AS1 2 OTTHUMG00000162058.1 +30247 chr17 HAVANA gene 50346092 50363138 5472.0 + 0 ENSG00000015532.9 protein_coding XYLT2 2 OTTHUMG00000162057.4 +30248 chr17 HAVANA gene 50362967 50365232 2266.0 - 0 ENSG00000279792.1 TEC AC015909.5 2 OTTHUMG00000177981.1 +30249 chr17 HAVANA gene 50367857 50373214 3027.0 - 0 ENSG00000108826.15 protein_coding MRPL27 1 OTTHUMG00000162062.4 +30250 chr17 HAVANA gene 50373220 50381483 3294.0 + 0 ENSG00000154920.14 protein_coding EME1 1 OTTHUMG00000164974.3 +30251 chr17 ENSEMBL gene 50386145 50386246 102.0 - 0 ENSG00000206824.1 misc_RNA RF00019 3 +30252 chr17 HAVANA gene 50375059 50397553 4570.0 - 0 ENSG00000108829.9 protein_coding LRRC59 2 OTTHUMG00000162079.4 ncRNA_host +30253 chr17 HAVANA gene 50396438 50397888 715.0 + 0 ENSG00000253102.1 antisense AC004707.1 1 OTTHUMG00000162080.3 +30254 chr17 HAVANA gene 50450179 50450725 257.0 - 0 ENSG00000262759.1 processed_pseudogene MRPS21P9 1 OTTHUMG00000177425.1 pseudo_consens +30255 chr17 HAVANA gene 50464496 50468966 1802.0 - 0 ENSG00000136457.9 protein_coding CHAD 2 OTTHUMG00000162129.3 +30256 chr17 HAVANA gene 50426158 50474845 5797.0 + 0 ENSG00000167107.12 protein_coding ACSF2 2 OTTHUMG00000162128.5 +30257 chr17 HAVANA gene 50475819 50478391 2573.0 + 0 ENSG00000275897.1 lincRNA AC021491.4 2 OTTHUMG00000186663.1 +30258 chr17 HAVANA gene 50478800 50485975 4198.0 + 0 ENSG00000136444.9 protein_coding RSAD1 1 OTTHUMG00000162126.5 +30259 chr17 HAVANA gene 50503412 50508328 349.0 - 0 ENSG00000249451.1 lincRNA AC021491.1 2 OTTHUMG00000162156.1 +30260 chr17 HAVANA gene 50508384 50531501 6515.0 + 0 ENSG00000136449.13 protein_coding MYCBPAP 1 OTTHUMG00000157184.21 +30261 chr17 HAVANA gene 50537294 50538754 886.0 - 0 ENSG00000250286.1 processed_transcript AC021491.2 1 OTTHUMG00000162154.1 +30262 chr17 HAVANA gene 50532543 50543750 4642.0 + 0 ENSG00000049283.17 protein_coding EPN3 2 OTTHUMG00000162155.5 overlapping_locus +30263 chr17 HAVANA gene 50543058 50555852 5337.0 + 0 ENSG00000006282.20 protein_coding SPATA20 2 OTTHUMG00000162162.4 overlapping_locus +30264 chr17 HAVANA gene 50556207 50562108 1579.0 - 0 ENSG00000250107.1 antisense CACNA1G-AS1 1 OTTHUMG00000162163.1 +30265 chr17 HAVANA gene 50563203 50563783 156.0 - 0 ENSG00000250976.1 antisense AC021491.3 2 OTTHUMG00000162216.1 +30266 chr17 HAVANA gene 50561068 50627474 9709.0 + 0 ENSG00000006283.17 protein_coding CACNA1G 2 OTTHUMG00000162180.7 +30267 chr17 HAVANA gene 50627032 50631940 510.0 - 0 ENSG00000251239.1 antisense AC004590.1 2 OTTHUMG00000162217.1 +30268 chr17 HAVANA gene 50634777 50692252 9614.0 + 0 ENSG00000108846.15 protein_coding ABCC3 1 OTTHUMG00000162245.5 +30269 chr17 HAVANA gene 50693448 50695449 670.0 + 0 ENSG00000262967.1 antisense AC005921.2 2 OTTHUMG00000177508.1 +30270 chr17 ENSEMBL gene 50696644 50696760 117.0 + 0 ENSG00000201340.1 misc_RNA RF00019 3 +30271 chr17 HAVANA gene 50693190 50707924 4849.0 - 0 ENSG00000154945.6 protein_coding ANKRD40 2 OTTHUMG00000162255.4 +30272 chr17 HAVANA gene 50722074 50724224 2151.0 + 0 ENSG00000278963.1 TEC AC005921.3 2 OTTHUMG00000177509.1 overlapping_locus +30273 chr17 HAVANA gene 50719544 50756213 8151.0 + 0 ENSG00000108848.15 protein_coding LUC7L3 1 OTTHUMG00000162257.12 overlapping_locus +30274 chr17 HAVANA gene 50761029 50767557 3663.0 - 0 ENSG00000167117.9 protein_coding ANKRD40CL 2 OTTHUMG00000132429.7 +30275 chr17 ENSEMBL gene 50768650 50768730 81.0 + 0 ENSG00000278672.1 miRNA MIR8059 3 +30276 chr17 HAVANA gene 50781306 50792493 1893.0 + 0 ENSG00000285829.1 lincRNA AC005921.4 2 OTTHUMG00000192673.1 +30277 chr17 HAVANA gene 50797366 50797651 286.0 - 0 ENSG00000248702.1 processed_pseudogene AC005921.1 1 OTTHUMG00000162275.1 pseudo_consens +30278 chr17 HAVANA gene 50840057 50841626 457.0 - 0 ENSG00000261976.2 antisense AC091062.1 2 OTTHUMG00000177523.2 +30279 chr17 HAVANA gene 50834650 50842348 3971.0 + 0 ENSG00000173714.7 protein_coding WFIKKN2 2 OTTHUMG00000162274.1 +30280 chr17 HAVANA gene 50847950 50849270 905.0 + 0 ENSG00000243521.2 processed_pseudogene RPL5P33 1 OTTHUMG00000157880.2 pseudo_consens +30281 chr17 HAVANA gene 50862223 50867978 2521.0 - 0 ENSG00000141232.4 protein_coding TOB1 1 OTTHUMG00000162277.3 +30282 chr17 HAVANA gene 50866679 50909737 2149.0 + 0 ENSG00000229980.4 processed_transcript TOB1-AS1 1 OTTHUMG00000132428.6 +30283 chr17 HAVANA gene 50909637 50910232 492.0 - 0 ENSG00000262006.1 lincRNA AC005920.4 2 OTTHUMG00000177525.1 +30284 chr17 HAVANA gene 50934989 50944713 2054.0 - 0 ENSG00000247011.2 lincRNA AC005920.1 2 OTTHUMG00000162317.1 +30285 chr17 HAVANA gene 50944104 50948750 1229.0 + 0 ENSG00000251665.1 lincRNA AC005920.3 1 OTTHUMG00000162315.1 +30286 chr17 HAVANA gene 51042524 51085471 332.0 + 0 ENSG00000249870.1 antisense AC005920.2 1 OTTHUMG00000162349.1 +30287 chr17 HAVANA gene 50962174 51120865 11963.0 - 0 ENSG00000008294.20 protein_coding SPAG9 1 OTTHUMG00000162316.6 +30288 chr17 HAVANA gene 51153536 51162428 3438.0 + 0 ENSG00000239672.7 protein_coding NME1 2 OTTHUMG00000137474.5 overlapping_locus +30289 chr17 HAVANA gene 51153590 51171744 1241.0 + 0 ENSG00000011052.21 protein_coding NME1-NME2 2 OTTHUMG00000137475.4 overlapping_locus +30290 chr17 HAVANA gene 51165435 51171747 2632.0 + 0 ENSG00000243678.11 protein_coding NME2 2 OTTHUMG00000154062.4 overlapping_locus +30291 chr17 HAVANA gene 51183191 51186403 3213.0 - 0 ENSG00000279089.1 TEC AC005839.1 2 OTTHUMG00000177540.1 overlapping_locus +30292 chr17 HAVANA gene 51249579 51251748 2170.0 - 0 ENSG00000264895.1 sense_intronic AC006141.1 2 OTTHUMG00000177541.1 overlapping_locus +30293 chr17 HAVANA gene 51177425 51260163 7201.0 - 0 ENSG00000011258.15 protein_coding MBTD1 1 OTTHUMG00000150442.3 overlapping_locus +30294 chr17 HAVANA gene 51260528 51297936 2721.0 + 0 ENSG00000011260.13 protein_coding UTP18 2 OTTHUMG00000162370.4 +30295 chr17 HAVANA gene 51332679 51334090 650.0 + 0 ENSG00000249982.1 lincRNA AC005823.2 2 OTTHUMG00000162373.1 +30296 chr17 HAVANA gene 51312609 51335165 1723.0 - 0 ENSG00000249383.2 lincRNA LINC02071 2 OTTHUMG00000162372.2 +30297 chr17 HAVANA gene 51335261 51336240 585.0 + 0 ENSG00000249658.1 lincRNA AC005823.1 2 OTTHUMG00000162371.1 +30298 chr17 HAVANA gene 51336715 51445802 5760.0 + 0 ENSG00000267452.2 lincRNA LINC02073 2 OTTHUMG00000162380.4 +30299 chr17 HAVANA gene 51502488 51503233 746.0 - 0 ENSG00000187504.6 processed_pseudogene RPL7P48 1 OTTHUMG00000157881.1 pseudo_consens +30300 chr17 HAVANA gene 51761260 51763397 2138.0 - 0 ENSG00000279743.1 TEC AC002090.1 2 OTTHUMG00000177545.1 overlapping_locus +30301 chr17 HAVANA gene 51630313 52160017 4450.0 - 0 ENSG00000154975.13 protein_coding CA10 1 OTTHUMG00000177544.3 overlapping_locus +30302 chr17 HAVANA gene 52390515 52535701 308.0 + 0 ENSG00000263317.1 lincRNA LINC01982 2 OTTHUMG00000177546.1 +30303 chr17 HAVANA gene 52862121 52899588 682.0 + 0 ENSG00000226364.1 lincRNA LINC02089 2 OTTHUMG00000132354.2 +30304 chr17 HAVANA gene 52985513 52987652 842.0 + 0 ENSG00000227011.4 lincRNA C17orf112 1 OTTHUMG00000132355.2 +30305 chr17 HAVANA gene 53105734 53106358 625.0 + 0 ENSG00000262902.1 processed_pseudogene MTCO1P40 2 OTTHUMG00000177751.2 +30306 chr17 HAVANA gene 53353427 53354134 708.0 - 0 ENSG00000263252.1 processed_pseudogene AC005341.1 2 OTTHUMG00000177752.1 +30307 chr17 HAVANA gene 53434131 53435829 1183.0 + 0 ENSG00000262271.1 processed_pseudogene AC090079.1 1 OTTHUMG00000177753.1 pseudo_consens +30308 chr17 HAVANA gene 53438556 53439721 768.0 + 0 ENSG00000262518.1 processed_pseudogene AC090079.2 2 OTTHUMG00000177754.1 +30309 chr17 HAVANA gene 53681630 53682111 482.0 - 0 ENSG00000262384.1 processed_pseudogene AC034268.1 1 OTTHUMG00000177755.1 pseudo_consens +30310 chr17 HAVANA gene 53756989 53757870 882.0 - 0 ENSG00000233380.1 processed_pseudogene RPS2P48 1 OTTHUMG00000132351.1 pseudo_consens +30311 chr17 HAVANA gene 53822901 53825213 2313.0 + 0 ENSG00000141200.7 protein_coding KIF2B 2 OTTHUMG00000177756.1 retrogene +30312 chr17 HAVANA gene 53952936 53955324 2389.0 + 0 ENSG00000263189.1 processed_pseudogene AC023934.1 2 OTTHUMG00000177757.1 +30313 chr17 HAVANA gene 53276760 54066825 1446.0 - 0 ENSG00000285939.1 antisense AC034268.2 2 OTTHUMG00000192905.1 +30314 chr17 HAVANA gene 54477796 54478168 373.0 + 0 ENSG00000261965.1 processed_pseudogene ISCA1P3 1 OTTHUMG00000177813.1 pseudo_consens +30315 chr17 HAVANA gene 54702936 54703430 495.0 + 0 ENSG00000263199.1 processed_pseudogene AC005951.1 1 OTTHUMG00000177814.1 pseudo_consens +30316 chr17 HAVANA gene 54754165 54754649 485.0 - 0 ENSG00000263125.1 processed_pseudogene ARL2BPP8 1 OTTHUMG00000177815.2 pseudo_consens +30317 chr17 ENSEMBL gene 54770949 54771277 329.0 + 0 ENSG00000251809.1 misc_RNA RN7SKP14 3 +30318 chr17 HAVANA gene 54956760 54958426 1667.0 - 0 ENSG00000279059.1 TEC AC007485.2 2 OTTHUMG00000177839.1 overlapping_locus +30319 chr17 HAVANA gene 54899387 54961956 7275.0 + 0 ENSG00000141198.15 protein_coding TOM1L1 1 OTTHUMG00000177816.6 +30320 chr17 HAVANA gene 54964474 54964679 206.0 + 0 ENSG00000275710.1 antisense AC007485.1 2 OTTHUMG00000186664.1 +30321 chr17 HAVANA gene 54951902 54968785 6488.0 - 0 ENSG00000166260.11 protein_coding COX11 1 OTTHUMG00000177838.1 overlapping_locus +30322 chr17 HAVANA gene 54968727 55173632 18055.0 + 0 ENSG00000166263.13 protein_coding STXBP4 1 OTTHUMG00000074043.5 +30323 chr17 HAVANA gene 55271504 55273653 1740.0 - 0 ENSG00000263096.1 antisense AC007638.2 2 OTTHUMG00000177841.1 +30324 chr17 HAVANA gene 55265012 55325065 6602.0 + 0 ENSG00000108924.13 protein_coding HLF 1 OTTHUMG00000177840.2 +30325 chr17 HAVANA gene 55325757 55327791 1763.0 - 0 ENSG00000262079.1 lincRNA AC007638.1 2 OTTHUMG00000177842.1 +30326 chr17 HAVANA gene 55392613 55421992 3177.0 - 0 ENSG00000108960.8 protein_coding MMD 1 OTTHUMG00000177845.3 +30327 chr17 HAVANA gene 55448433 55511444 3506.0 - 0 ENSG00000261873.2 protein_coding SMIM36 2 OTTHUMG00000177855.2 +30328 chr17 HAVANA gene 55550931 55551649 719.0 - 0 ENSG00000262135.1 processed_pseudogene GARSP1 1 OTTHUMG00000177857.1 pseudo_consens,overlapping_locus +30329 chr17 ENSEMBL gene 55551810 55551920 111.0 + 0 ENSG00000200107.1 snRNA RNU6-1249P 3 +30330 chr17 HAVANA gene 55526964 55561577 1124.0 - 0 ENSG00000236319.2 transcribed_processed_pseudogene AC105021.1 1 OTTHUMG00000177856.1 pseudo_consens,overlapping_locus +30331 chr17 HAVANA gene 55719627 55732121 2906.0 - 0 ENSG00000166292.11 protein_coding TMEM100 2 OTTHUMG00000177858.4 +30332 chr17 HAVANA gene 55750979 55842830 5880.0 + 0 ENSG00000141179.13 protein_coding PCTP 1 OTTHUMG00000177859.2 +30333 chr17 HAVANA gene 55842677 55872939 585.0 - 0 ENSG00000262052.1 lincRNA AC090618.1 2 OTTHUMG00000177894.1 +30334 chr17 HAVANA gene 56368063 56368215 153.0 + 0 ENSG00000261882.1 processed_pseudogene AC006600.1 2 OTTHUMG00000178119.1 overlapping_locus +30335 chr17 HAVANA gene 56471142 56473647 2506.0 + 0 ENSG00000279606.1 TEC AC006600.2 2 OTTHUMG00000178120.1 overlapping_locus +30336 chr17 HAVANA gene 55882301 56511659 7498.0 + 0 ENSG00000153930.11 protein_coding ANKFN1 1 OTTHUMG00000155010.5 overlapping_locus +30337 chr17 HAVANA gene 56573040 56573195 156.0 + 0 ENSG00000243058.1 processed_pseudogene RPL39P33 1 OTTHUMG00000157882.1 pseudo_consens +30338 chr17 HAVANA gene 56593699 56595590 1892.0 + 0 ENSG00000183691.4 protein_coding NOG 2 OTTHUMG00000151770.1 +30339 chr17 HAVANA gene 56803841 56804269 429.0 - 0 ENSG00000283209.1 sense_intronic AC106858.1 2 OTTHUMG00000191679.1 +30340 chr17 HAVANA gene 56791913 56838773 2410.0 - 0 ENSG00000214226.8 protein_coding C17orf67 2 OTTHUMG00000132083.2 overlapping_locus +30341 chr17 HAVANA gene 56834099 56869567 10933.0 + 0 ENSG00000153933.9 protein_coding DGKE 1 OTTHUMG00000178121.2 +30342 chr17 ENSEMBL gene 56871170 56871276 107.0 + 0 ENSG00000212469.1 snRNA RNU6-1158P 3 +30343 chr17 HAVANA gene 56884639 56884819 181.0 - 0 ENSG00000262408.1 processed_pseudogene AC015912.2 2 OTTHUMG00000178123.1 +30344 chr17 ENSEMBL gene 56891270 56891355 86.0 - 0 ENSG00000284542.1 miRNA MIR3614 3 +30345 chr17 HAVANA gene 56888880 56891841 538.0 + 0 ENSG00000262112.1 antisense AC015912.1 2 OTTHUMG00000178125.1 +30346 chr17 HAVANA gene 56836387 56914080 9501.0 - 0 ENSG00000121060.17 protein_coding TRIM25 1 OTTHUMG00000178124.3 ncRNA_host,overlapping_locus +30347 chr17 HAVANA gene 56914186 56914533 348.0 + 0 ENSG00000274213.1 lincRNA AC015912.3 2 OTTHUMG00000186667.1 +30348 chr17 HAVANA gene 56939932 56941275 549.0 + 0 ENSG00000262298.1 antisense AC004584.1 2 OTTHUMG00000178127.1 +30349 chr17 HAVANA gene 56951664 56952404 410.0 + 0 ENSG00000262623.1 processed_pseudogene AC004584.2 1 OTTHUMG00000178128.1 pseudo_consens +30350 chr17 HAVANA gene 56938187 56961054 3030.0 - 0 ENSG00000121058.4 protein_coding COIL 1 OTTHUMG00000178126.2 +30351 chr17 HAVANA gene 56982749 56985104 2356.0 + 0 ENSG00000263120.1 sense_intronic AC004584.3 2 OTTHUMG00000178130.1 overlapping_locus +30352 chr17 HAVANA gene 56978105 57006768 3853.0 + 0 ENSG00000121064.12 protein_coding SCPEP1 1 OTTHUMG00000178129.2 overlapping_locus +30353 chr17 HAVANA gene 57045478 57046797 1320.0 + 0 ENSG00000261192.1 transcribed_processed_pseudogene RNF126P1 1 OTTHUMG00000176069.2 pseudo_consens +30354 chr17 HAVANA gene 57078298 57085024 855.0 - 0 ENSG00000263004.1 lincRNA AC007114.1 2 OTTHUMG00000178131.1 +30355 chr17 HAVANA gene 57092145 57096425 4281.0 - 0 ENSG00000263089.1 antisense AC007114.2 2 OTTHUMG00000178132.1 +30356 chr17 HAVANA gene 57085092 57121349 5399.0 + 0 ENSG00000121057.12 protein_coding AKAP1 2 OTTHUMG00000140369.5 +30357 chr17 HAVANA gene 57196081 57213300 730.0 - 0 ENSG00000285785.1 lincRNA AC003950.1 2 OTTHUMG00000193087.1 +30358 chr17 HAVANA gene 57277920 57280017 2098.0 + 0 ENSG00000279555.1 TEC AC091181.1 2 OTTHUMG00000178399.1 overlapping_locus +30359 chr17 HAVANA gene 57448218 57450291 2074.0 + 0 ENSG00000279281.1 TEC AC015883.1 2 OTTHUMG00000178400.1 overlapping_locus +30360 chr17 HAVANA gene 57522248 57523597 563.0 - 0 ENSG00000266100.1 antisense AC007431.2 2 OTTHUMG00000178403.1 +30361 chr17 HAVANA gene 57531769 57532355 587.0 + 0 ENSG00000280028.1 TEC AC007431.3 2 OTTHUMG00000178404.1 overlapping_locus +30362 chr17 HAVANA gene 57600856 57608412 1412.0 - 0 ENSG00000263499.1 antisense AC007431.1 2 OTTHUMG00000178406.1 +30363 chr17 ENSEMBL gene 57618108 57618393 286.0 + 0 ENSG00000242889.3 misc_RNA RN7SL449P 3 +30364 chr17 HAVANA gene 57255851 57684685 21479.0 + 0 ENSG00000153944.10 protein_coding MSI2 2 OTTHUMG00000178398.3 ncRNA_host,overlapping_locus +30365 chr17 ENSEMBL gene 57685529 57685592 64.0 - 0 ENSG00000238447.1 snRNA RNU7-134P 3 +30366 chr17 HAVANA gene 57744481 57745312 832.0 - 0 ENSG00000166329.2 protein_coding CCDC182 2 OTTHUMG00000132063.1 +30367 chr17 ENSEMBL gene 57789449 57789732 284.0 + 0 ENSG00000222976.1 misc_RNA RN7SKP94 3 +30368 chr17 HAVANA gene 57771946 57834749 612.0 - 0 ENSG00000265542.5 lincRNA AC015845.2 2 OTTHUMG00000178773.1 +30369 chr17 HAVANA gene 57834781 57850056 6379.0 - 0 ENSG00000181610.12 protein_coding MRPS23 2 OTTHUMG00000178774.3 +30370 chr17 HAVANA gene 57912333 57922581 459.0 + 0 ENSG00000264914.1 antisense AC015845.1 2 OTTHUMG00000178776.2 +30371 chr17 HAVANA gene 57861243 57955323 5577.0 - 0 ENSG00000180891.12 protein_coding CUEDC1 1 OTTHUMG00000178775.3 +30372 chr17 HAVANA gene 57955965 57956143 179.0 + 0 ENSG00000278642.1 lincRNA AC015813.4 2 OTTHUMG00000186673.1 +30373 chr17 HAVANA gene 57971547 57988259 4913.0 - 0 ENSG00000136451.8 protein_coding VEZF1 1 OTTHUMG00000178777.5 +30374 chr17 HAVANA gene 57988180 57988760 581.0 + 0 ENSG00000280233.1 TEC AC015813.7 2 OTTHUMG00000178778.1 +30375 chr17 HAVANA gene 57989039 57994850 5812.0 - 0 ENSG00000264112.1 lincRNA AC015813.1 2 OTTHUMG00000178780.1 overlapping_locus +30376 chr17 HAVANA gene 57989038 58007246 2270.0 - 0 ENSG00000266086.2 protein_coding AC015813.2 1 OTTHUMG00000178779.2 overlapping_locus +30377 chr17 HAVANA gene 58003360 58007346 3340.0 - 0 ENSG00000136450.12 protein_coding SRSF1 1 OTTHUMG00000178781.2 overlapping_locus +30378 chr17 HAVANA gene 58006674 58008187 1514.0 + 0 ENSG00000279069.1 TEC AC015813.5 2 OTTHUMG00000178782.1 +30379 chr17 HAVANA gene 58050789 58060739 3048.0 - 0 ENSG00000285930.1 lincRNA AC015813.8 2 OTTHUMG00000192664.1 +30380 chr17 HAVANA gene 58076891 58083204 6113.0 - 0 ENSG00000266290.1 lincRNA AC015813.3 2 OTTHUMG00000179240.1 +30381 chr17 HAVANA gene 58083415 58095536 6805.0 + 0 ENSG00000264364.2 protein_coding DYNLL2 2 OTTHUMG00000178783.2 +30382 chr17 HAVANA gene 58095672 58101479 5808.0 + 0 ENSG00000279207.1 TEC AC015813.6 2 OTTHUMG00000178784.2 +30383 chr17 HAVANA gene 58157028 58157800 773.0 + 0 ENSG00000229590.3 processed_pseudogene MSX2P1 2 OTTHUMG00000178800.1 overlapping_locus +30384 chr17 HAVANA gene 58148449 58159555 4927.0 + 0 ENSG00000141194.6 protein_coding OR4D1 2 OTTHUMG00000178799.2 overlapping_locus +30385 chr17 HAVANA gene 58166982 58171411 2083.0 + 0 ENSG00000255713.2 protein_coding OR4D2 2 OTTHUMG00000178801.3 +30386 chr17 HAVANA gene 58202352 58203003 652.0 - 0 ENSG00000278627.1 antisense AC005962.1 2 OTTHUMG00000186674.1 +30387 chr17 HAVANA gene 58192737 58205174 2708.0 + 0 ENSG00000121053.5 protein_coding EPX 2 OTTHUMG00000178802.1 +30388 chr17 HAVANA gene 58205437 58219605 4078.0 - 0 ENSG00000011143.16 protein_coding MKS1 1 OTTHUMG00000133714.7 +30389 chr17 HAVANA gene 58218548 58268518 6433.0 + 0 ENSG00000167419.10 protein_coding LPO 1 OTTHUMG00000178921.3 +30390 chr17 HAVANA gene 58269856 58280935 3526.0 - 0 ENSG00000005381.7 protein_coding MPO 2 OTTHUMG00000178922.2 +30391 chr17 HAVANA gene 58301228 58328760 11354.0 - 0 ENSG00000005379.16 protein_coding TSPOAP1 2 OTTHUMG00000178923.4 +30392 chr17 ENSEMBL gene 58331232 58331318 87.0 - 0 ENSG00000284353.1 miRNA MIR142 3 +30393 chr17 HAVANA gene 58330884 58332508 1625.0 - 0 ENSG00000265206.5 antisense AC004687.1 2 OTTHUMG00000178925.1 ncRNA_host +30394 chr17 ENSEMBL gene 58335976 58336022 47.0 - 0 ENSG00000264399.1 miRNA MIR4736 3 +30395 chr17 HAVANA gene 58345175 58353093 2079.0 - 0 ENSG00000213246.6 protein_coding SUPT4H1 1 OTTHUMG00000178926.4 overlapping_locus +30396 chr17 HAVANA gene 58325450 58415766 3601.0 + 0 ENSG00000265148.5 antisense TSPOAP1-AS1 2 OTTHUMG00000178924.1 +30397 chr17 HAVANA gene 58352500 58417595 7505.0 - 0 ENSG00000108375.12 protein_coding RNF43 2 OTTHUMG00000193347.1 overlapping_locus +30398 chr17 HAVANA gene 58345206 58417595 5828.0 - 0 ENSG00000285897.1 protein_coding AC004687.2 2 OTTHUMG00000179077.3 overlapping_locus +30399 chr17 HAVANA gene 58476138 58476950 813.0 - 0 ENSG00000266648.1 processed_pseudogene SETP3 1 OTTHUMG00000179241.1 pseudo_consens,overlapping_locus +30400 chr17 HAVANA gene 58420167 58488384 4094.0 - 0 ENSG00000176160.10 protein_coding HSF5 2 OTTHUMG00000179078.2 overlapping_locus +30401 chr17 HAVANA gene 58489529 58517905 7475.0 - 0 ENSG00000108389.9 protein_coding MTMR4 2 OTTHUMG00000179079.5 +30402 chr17 HAVANA gene 58520250 58540818 8012.0 - 0 ENSG00000108387.14 protein_coding SEPT4 2 OTTHUMG00000179243.3 +30403 chr17 HAVANA gene 58541587 58544368 2123.0 - 0 ENSG00000181013.3 protein_coding C17orf47 2 OTTHUMG00000179244.1 +30404 chr17 HAVANA gene 58519837 58556977 1575.0 + 0 ENSG00000264672.5 antisense SEPT4-AS1 2 OTTHUMG00000179242.1 +30405 chr17 ENSEMBL gene 58631641 58631836 196.0 - 0 ENSG00000212195.2 snoRNA RF00012 3 +30406 chr17 ENSEMBL gene 58666537 58666697 161.0 - 0 ENSG00000199426.1 snRNA RNU1-108P 3 +30407 chr17 HAVANA gene 58675286 58675462 177.0 + 0 ENSG00000266561.2 processed_pseudogene AC011195.1 1 OTTHUMG00000184896.1 pseudo_consens +30408 chr17 ENSEMBL gene 58677574 58677737 164.0 - 0 ENSG00000206917.1 snRNA RNU1-52P 3 +30409 chr17 ENSEMBL gene 58679527 58679690 164.0 - 0 ENSG00000200997.1 snRNA RNU1-85P 3 +30410 chr17 HAVANA gene 58660424 58692018 1486.0 - 0 ENSG00000266826.2 protein_coding AC011195.2 2 OTTHUMG00000179246.2 ncRNA_host,overlapping_locus,retrogene +30411 chr17 HAVANA gene 58556678 58692055 5325.0 - 0 ENSG00000121101.15 protein_coding TEX14 2 OTTHUMG00000179245.2 ncRNA_host,overlapping_locus +30412 chr17 HAVANA gene 58692573 58735611 6068.0 + 0 ENSG00000108384.14 protein_coding RAD51C 1 OTTHUMG00000141292.7 +30413 chr17 HAVANA gene 58747055 58747340 286.0 + 0 ENSG00000274198.1 lincRNA AC025521.1 2 OTTHUMG00000186675.1 +30414 chr17 ENSEMBL gene 58785323 58785608 286.0 - 0 ENSG00000276601.1 misc_RNA RF00017 3 +30415 chr17 ENSEMBL gene 58835899 58835994 96.0 + 0 ENSG00000251865.1 snRNA RNU6-518P 3 +30416 chr17 HAVANA gene 58897776 58899692 383.0 + 0 ENSG00000241462.1 processed_pseudogene AC100832.1 1 OTTHUMG00000157889.1 pseudo_consens,overlapping_locus +30417 chr17 ENSEMBL gene 58951185 58951513 329.0 + 0 ENSG00000275680.1 misc_RNA RF00017 3 +30418 chr17 HAVANA gene 58965952 58966727 776.0 + 0 ENSG00000263938.1 sense_intronic AC100832.2 2 OTTHUMG00000179249.1 overlapping_locus +30419 chr17 HAVANA gene 58755869 58985176 6542.0 + 0 ENSG00000175175.5 protein_coding PPM1E 2 OTTHUMG00000179248.2 ncRNA_host,overlapping_locus +30420 chr17 ENSEMBL gene 59059226 59059493 268.0 + 0 ENSG00000263558.2 misc_RNA RN7SL716P 3 +30421 chr17 HAVANA gene 58982638 59106921 5482.0 - 0 ENSG00000108395.13 protein_coding TRIM37 1 OTTHUMG00000179360.2 +30422 chr17 HAVANA gene 59106598 59118267 1338.0 + 0 ENSG00000224738.1 antisense AC099850.1 2 OTTHUMG00000132079.1 +30423 chr17 ENSEMBL gene 59129276 59129458 183.0 - 0 ENSG00000252212.1 snRNA RNU2-58P 3 +30424 chr17 ENSEMBL gene 59137758 59137872 115.0 - 0 ENSG00000211514.1 miRNA MIR454 3 +30425 chr17 ENSEMBL gene 59151136 59151221 86.0 - 0 ENSG00000207996.1 miRNA MIR301A 3 +30426 chr17 HAVANA gene 59109951 59155269 3148.0 - 0 ENSG00000182628.12 protein_coding SKA2 1 OTTHUMG00000179361.2 ncRNA_host +30427 chr17 HAVANA gene 59174983 59181787 798.0 - 0 ENSG00000266537.1 unprocessed_pseudogene SPDYE22P 2 OTTHUMG00000179363.1 +30428 chr17 HAVANA gene 59202677 59203829 321.0 - 0 ENSG00000265415.1 antisense AC099850.3 2 OTTHUMG00000179364.1 +30429 chr17 HAVANA gene 59155499 59204705 4080.0 + 0 ENSG00000068489.12 protein_coding PRR11 1 OTTHUMG00000179362.3 overlapping_locus +30430 chr17 HAVANA gene 59197566 59215226 557.0 + 0 ENSG00000265303.1 protein_coding AC099850.2 2 OTTHUMG00000179375.1 overlapping_locus +30431 chr17 HAVANA gene 59209400 59215247 3752.0 + 0 ENSG00000167447.12 protein_coding SMG8 2 OTTHUMG00000179365.2 overlapping_locus +30432 chr17 ENSEMBL gene 59260748 59260846 99.0 + 0 ENSG00000207235.1 misc_RNA RF00019 3 +30433 chr17 HAVANA gene 59220467 59275967 2970.0 + 0 ENSG00000153982.10 protein_coding GDPD1 2 OTTHUMG00000179376.1 ncRNA_host +30434 chr17 HAVANA gene 59281130 59281343 214.0 + 0 ENSG00000271063.1 processed_pseudogene SNRPGP17 1 OTTHUMG00000184894.1 pseudo_consens +30435 chr17 HAVANA gene 59362665 59363278 614.0 + 0 ENSG00000278863.1 TEC AC091059.2 2 OTTHUMG00000179379.1 overlapping_locus +30436 chr17 ENSEMBL gene 59366083 59366154 72.0 + 0 ENSG00000263857.1 miRNA MIR4729 3 +30437 chr17 HAVANA gene 59331689 59401729 8667.0 + 0 ENSG00000175155.8 protein_coding YPEL2 2 OTTHUMG00000179378.1 ncRNA_host,overlapping_locus +30438 chr17 HAVANA gene 59400488 59403303 215.0 - 0 ENSG00000266002.1 antisense AC091059.1 2 OTTHUMG00000179381.1 +30439 chr17 HAVANA gene 59430670 59526946 1216.0 - 0 ENSG00000265313.6 lincRNA LINC01476 2 OTTHUMG00000179382.3 +30440 chr17 ENSEMBL gene 59537359 59537499 141.0 - 0 ENSG00000200889.1 snRNA RNU4-13P 3 +30441 chr17 HAVANA gene 59565525 59608345 5939.0 + 0 ENSG00000108406.9 protein_coding DHX40 1 OTTHUMG00000179401.3 +30442 chr17 HAVANA gene 59618553 59619714 1162.0 - 0 ENSG00000273702.1 lincRNA AC091271.1 2 OTTHUMG00000186677.1 +30443 chr17 HAVANA gene 59619689 59696956 11836.0 + 0 ENSG00000141367.11 protein_coding CLTC 1 OTTHUMG00000134279.4 +30444 chr17 HAVANA gene 59674636 59707626 4740.0 - 0 ENSG00000141378.14 protein_coding PTRH2 2 OTTHUMG00000154532.3 +30445 chr17 HAVANA gene 59784813 59785035 223.0 + 0 ENSG00000267637.1 sense_intronic AC040904.1 2 OTTHUMG00000179883.1 overlapping_locus +30446 chr17 ENSEMBL gene 59841266 59841337 72.0 + 0 ENSG00000284190.1 miRNA MIR21 3 +30447 chr17 HAVANA gene 59707192 59842255 6916.0 + 0 ENSG00000062716.12 protein_coding VMP1 2 OTTHUMG00000179882.3 ncRNA_host,overlapping_locus +30448 chr17 ENSEMBL gene 59847438 59847544 107.0 - 0 ENSG00000201524.1 snRNA RNU6-450P 3 +30449 chr17 HAVANA gene 59885015 59885552 538.0 + 0 ENSG00000270264.1 processed_pseudogene NDUFB8P2 1 OTTHUMG00000184889.1 pseudo_consens +30450 chr17 HAVANA gene 59859482 59892945 3330.0 - 0 ENSG00000108423.14 protein_coding TUBD1 1 OTTHUMG00000179885.2 +30451 chr17 HAVANA gene 59912197 59912366 170.0 + 0 ENSG00000241913.1 processed_pseudogene RPS29P21 1 OTTHUMG00000157891.1 pseudo_consens,overlapping_locus +30452 chr17 HAVANA gene 59893046 59950564 7687.0 + 0 ENSG00000108443.13 protein_coding RPS6KB1 1 OTTHUMG00000150642.4 overlapping_locus +30453 chr17 HAVANA gene 59952240 59964761 3399.0 - 0 ENSG00000189050.15 protein_coding RNFT1 2 OTTHUMG00000148658.4 overlapping_locus +30454 chr17 HAVANA gene 59940908 59973101 481.0 + 0 ENSG00000267318.1 protein_coding AC005702.1 2 OTTHUMG00000179976.1 overlapping_locus +30455 chr17 HAVANA gene 59964832 59996972 2137.0 + 0 ENSG00000267302.5 lincRNA RNFT1-DT 2 OTTHUMG00000179978.1 overlapping_locus +30456 chr17 HAVANA gene 59976009 60002384 1412.0 - 0 ENSG00000266992.1 transcribed_unprocessed_pseudogene DHX40P1 2 OTTHUMG00000179979.1 overlapping_locus +30457 chr17 HAVANA gene 60008437 60017498 1693.0 - 0 ENSG00000238283.3 transcribed_unprocessed_pseudogene TBC1D3P1 2 OTTHUMG00000179980.1 overlapping_locus +30458 chr17 HAVANA gene 59962363 60018975 1841.0 - 0 ENSG00000267104.2 processed_transcript TBC1D3P1-DHX40P1 2 OTTHUMG00000179977.1 overlapping_locus +30459 chr17 HAVANA gene 60021072 60022436 421.0 + 0 ENSG00000275860.1 unprocessed_pseudogene AC005702.4 2 OTTHUMG00000187935.1 +30460 chr17 HAVANA gene 60025859 60030746 416.0 + 0 ENSG00000274378.1 unprocessed_pseudogene AC005702.3 2 OTTHUMG00000187936.1 +30461 chr17 ENSEMBL gene 60043025 60043105 81.0 - 0 ENSG00000264049.1 miRNA MIR4737 3 +30462 chr17 HAVANA gene 60063004 60064782 1447.0 - 0 ENSG00000267526.1 processed_pseudogene AC005702.2 1 OTTHUMG00000179982.1 pseudo_consens,overlapping_locus +30463 chr17 HAVANA gene 60043194 60078931 4868.0 - 0 ENSG00000068097.14 protein_coding HEATR6 2 OTTHUMG00000179981.2 overlapping_locus +30464 chr17 HAVANA gene 60079309 60088695 699.0 + 0 ENSG00000267416.1 lincRNA AC025048.4 2 OTTHUMG00000179983.2 +30465 chr17 HAVANA gene 60083566 60091885 1099.0 - 0 ENSG00000261040.7 transcribed_unitary_pseudogene WFDC21P 2 OTTHUMG00000176074.3 +30466 chr17 HAVANA gene 60101759 60102919 1161.0 - 0 ENSG00000280852.2 transcribed_processed_pseudogene AC025048.6 2 OTTHUMG00000191504.1 +30467 chr17 HAVANA gene 60113793 60120687 569.0 - 0 ENSG00000267295.1 unprocessed_pseudogene AC025048.3 2 OTTHUMG00000179984.1 +30468 chr17 HAVANA gene 60124110 60125474 421.0 - 0 ENSG00000277532.1 unprocessed_pseudogene AC025048.5 2 OTTHUMG00000187937.1 +30469 chr17 HAVANA gene 60126535 60135644 1566.0 - 0 ENSG00000267248.1 processed_transcript AC025048.2 2 OTTHUMG00000179985.1 +30470 chr17 HAVANA gene 60135762 60140081 542.0 - 0 ENSG00000267095.1 lincRNA AC025048.1 2 OTTHUMG00000179986.1 +30471 chr17 HAVANA gene 60149936 60170899 2424.0 + 0 ENSG00000167434.9 protein_coding CA4 2 OTTHUMG00000179987.3 +30472 chr17 ENSEMBL gene 60231516 60231646 131.0 - 0 ENSG00000252577.1 scaRNA SCARNA20 3 +30473 chr17 HAVANA gene 60245288 60245647 360.0 - 0 ENSG00000241157.1 processed_pseudogene AC104763.1 1 OTTHUMG00000157893.1 pseudo_consens,overlapping_locus +30474 chr17 HAVANA gene 60256720 60258411 618.0 + 0 ENSG00000275562.1 unprocessed_pseudogene AC104763.3 1 OTTHUMG00000187938.1 pseudo_consens +30475 chr17 HAVANA gene 60315834 60316215 382.0 + 0 ENSG00000271626.1 processed_pseudogene AC104763.2 1 OTTHUMG00000184886.1 pseudo_consens +30476 chr17 HAVANA gene 60179094 60422470 7755.0 - 0 ENSG00000170832.12 protein_coding USP32 1 OTTHUMG00000180001.3 ncRNA_host,overlapping_locus +30477 chr17 HAVANA gene 60392429 60431421 1184.0 + 0 ENSG00000141371.12 protein_coding C17orf64 1 OTTHUMG00000157171.6 +30478 chr17 HAVANA gene 60433678 60435996 2319.0 - 0 ENSG00000213228.5 transcribed_processed_pseudogene RPL12P38 1 OTTHUMG00000157897.2 pseudo_consens +30479 chr17 HAVANA gene 60513190 60513550 361.0 + 0 ENSG00000270553.1 processed_pseudogene AC011921.3 1 OTTHUMG00000184960.1 pseudo_consens +30480 chr17 HAVANA gene 60443149 60526219 9876.0 - 0 ENSG00000062725.9 protein_coding APPBP2 2 OTTHUMG00000180048.3 +30481 chr17 HAVANA gene 60526293 60550798 718.0 + 0 ENSG00000259349.1 antisense AC011921.1 2 OTTHUMG00000172047.1 +30482 chr17 HAVANA gene 60562010 60562161 152.0 - 0 ENSG00000267678.1 processed_pseudogene AC011921.2 2 OTTHUMG00000180049.1 +30483 chr17 HAVANA gene 60564740 60565671 606.0 - 0 ENSG00000266943.1 processed_pseudogene RPSAP66 1 OTTHUMG00000180051.1 pseudo_consens +30484 chr17 HAVANA gene 60564547 60586623 646.0 + 0 ENSG00000267772.1 lincRNA LINC01999 1 OTTHUMG00000180050.1 +30485 chr17 ENSEMBL gene 60662333 60662437 105.0 - 0 ENSG00000200013.1 snRNA RNU6-623P 3 +30486 chr17 HAVANA gene 60600183 60666280 5044.0 + 0 ENSG00000170836.11 protein_coding PPM1D 1 OTTHUMG00000180052.3 +30487 chr17 ENSEMBL gene 60696313 60696605 293.0 + 0 ENSG00000239932.3 misc_RNA RN7SL606P 3 +30488 chr17 HAVANA gene 60727165 60727482 318.0 - 0 ENSG00000224011.1 processed_pseudogene AC110602.1 1 OTTHUMG00000132341.1 pseudo_consens +30489 chr17 ENSEMBL gene 60748940 60749046 107.0 - 0 ENSG00000252534.1 misc_RNA RF00019 3 +30490 chr17 HAVANA gene 60810165 60811462 1298.0 + 0 ENSG00000267083.1 processed_pseudogene KRT18P61 1 OTTHUMG00000180065.1 pseudo_consens,overlapping_locus +30491 chr17 HAVANA gene 60851382 60851745 364.0 + 0 ENSG00000254114.1 processed_pseudogene HMGN1P28 1 OTTHUMG00000163587.1 pseudo_consens,overlapping_locus +30492 chr17 ENSEMBL gene 60899891 60900185 295.0 + 0 ENSG00000264322.2 misc_RNA RN7SL448P 3 +30493 chr17 HAVANA gene 61034636 61070122 429.0 - 0 ENSG00000267207.1 antisense AC005884.1 2 OTTHUMG00000180067.1 overlapping_locus +30494 chr17 HAVANA gene 61069871 61070341 471.0 + 0 ENSG00000227694.1 processed_pseudogene RPL23AP74 1 OTTHUMG00000132323.1 pseudo_consens,overlapping_locus +30495 chr17 HAVANA gene 61069856 61070356 247.0 - 0 ENSG00000267449.1 antisense AC005884.2 2 OTTHUMG00000180068.1 overlapping_locus +30496 chr17 HAVANA gene 61130704 61135964 286.0 - 0 ENSG00000267667.1 antisense AC005856.1 2 OTTHUMG00000180069.1 +30497 chr17 HAVANA gene 61354763 61355155 393.0 - 0 ENSG00000273982.1 antisense AC005746.3 2 OTTHUMG00000186680.1 +30498 chr17 HAVANA gene 61382785 61384680 1329.0 + 0 ENSG00000266934.1 sense_intronic AC005746.1 2 OTTHUMG00000180066.1 overlapping_locus +30499 chr17 HAVANA gene 60677453 61392838 14101.0 + 0 ENSG00000141376.22 protein_coding BCAS3 1 OTTHUMG00000180064.2 ncRNA_host,overlapping_locus +30500 chr17 HAVANA gene 61361668 61400243 470.0 - 0 ENSG00000267131.1 antisense AC005746.2 2 OTTHUMG00000180075.1 overlapping_locus +30501 chr17 HAVANA gene 61399896 61409466 6029.0 + 0 ENSG00000121068.13 protein_coding TBX2 2 OTTHUMG00000156986.3 +30502 chr17 HAVANA gene 61393456 61411555 1206.0 - 0 ENSG00000267280.5 antisense TBX2-AS1 2 OTTHUMG00000180076.1 overlapping_locus +30503 chr17 HAVANA gene 61411751 61413280 1530.0 + 0 ENSG00000187013.4 lincRNA C17orf82 2 OTTHUMG00000180077.1 +30504 chr17 HAVANA gene 61460224 61463384 552.0 - 0 ENSG00000267137.1 antisense AC005901.1 2 OTTHUMG00000180079.1 +30505 chr17 HAVANA gene 61452404 61485110 3996.0 + 0 ENSG00000121075.10 protein_coding TBX4 2 OTTHUMG00000180078.4 +30506 chr17 HAVANA gene 61590426 61591202 777.0 - 0 ENSG00000253506.2 protein_coding NACA2 2 OTTHUMG00000132321.3 retrogene +30507 chr17 HAVANA gene 61681266 61863521 7991.0 - 0 ENSG00000136492.8 protein_coding BRIP1 1 OTTHUMG00000179233.2 +30508 chr17 ENSEMBL gene 61874084 61874182 99.0 - 0 ENSG00000202361.1 misc_RNA RF00019 3 +30509 chr17 HAVANA gene 61865367 61928016 7138.0 - 0 ENSG00000108506.12 protein_coding INTS2 1 OTTHUMG00000179234.4 ncRNA_host +30510 chr17 ENSEMBL gene 62005737 62006016 280.0 - 0 ENSG00000242398.3 misc_RNA RN7SL800P 3 +30511 chr17 HAVANA gene 62003700 62007518 3819.0 - 0 ENSG00000279133.1 TEC AC018628.1 2 OTTHUMG00000179252.1 ncRNA_host,overlapping_locus +30512 chr17 ENSEMBL gene 62036833 62036945 113.0 + 0 ENSG00000200842.1 misc_RNA RF00019 3 +30513 chr17 HAVANA gene 62035944 62040352 1426.0 + 0 ENSG00000285879.1 antisense AC018628.2 2 OTTHUMG00000193263.1 ncRNA_host +30514 chr17 HAVANA gene 61942605 62065282 12677.0 - 0 ENSG00000108510.9 protein_coding MED13 2 OTTHUMG00000179251.1 ncRNA_host,overlapping_locus +30515 chr17 ENSEMBL gene 62122320 62122421 102.0 + 0 ENSG00000207123.1 misc_RNA RF00019 3 +30516 chr17 HAVANA gene 62136972 62140639 3668.0 - 0 ENSG00000266066.1 processed_pseudogene POLRMTP1 1 OTTHUMG00000179254.1 pseudo_consens +30517 chr17 HAVANA gene 62231470 62247153 843.0 - 0 ENSG00000266365.1 unprocessed_pseudogene AC053481.3 2 OTTHUMG00000179158.1 +30518 chr17 HAVANA gene 62260634 62261936 216.0 + 0 ENSG00000266647.1 unprocessed_pseudogene AC053481.4 2 OTTHUMG00000179159.1 +30519 chr17 HAVANA gene 62264705 62275655 2116.0 - 0 ENSG00000188755.10 transcribed_unprocessed_pseudogene TBC1D3P2 2 OTTHUMG00000179160.2 +30520 chr17 HAVANA gene 62282702 62297026 1500.0 - 0 ENSG00000263887.7 transcribed_unprocessed_pseudogene AC053481.2 2 OTTHUMG00000179161.2 +30521 chr17 HAVANA gene 62319884 62320189 306.0 + 0 ENSG00000242123.1 processed_pseudogene AC053481.1 1 OTTHUMG00000157901.1 pseudo_consens +30522 chr17 HAVANA gene 62381668 62382015 348.0 + 0 ENSG00000239809.1 processed_pseudogene AC008026.2 1 OTTHUMG00000157904.1 pseudo_consens,overlapping_locus +30523 chr17 ENSEMBL gene 62383104 62383166 63.0 + 0 ENSG00000251981.1 snRNA RNU7-52P 3 +30524 chr17 HAVANA gene 62397397 62398142 444.0 + 0 ENSG00000239527.1 processed_pseudogene RPS23P7 1 OTTHUMG00000157912.1 pseudo_consens,overlapping_locus +30525 chr17 HAVANA gene 62343941 62416479 3080.0 + 0 ENSG00000172421.9 protein_coding EFCAB3 2 OTTHUMG00000179175.5 ncRNA_host,overlapping_locus +30526 chr17 HAVANA gene 62423867 62450822 3843.0 + 0 ENSG00000087995.15 protein_coding METTL2A 2 OTTHUMG00000164527.3 +30527 chr17 HAVANA gene 62516321 62516767 447.0 - 0 ENSG00000239246.3 processed_pseudogene AC008026.1 1 OTTHUMG00000157915.1 pseudo_consens +30528 chr17 HAVANA gene 62549726 62552121 1707.0 + 0 ENSG00000264546.1 sense_intronic AC008026.3 2 OTTHUMG00000179177.1 overlapping_locus +30529 chr17 HAVANA gene 62458658 62615481 8563.0 + 0 ENSG00000146872.17 protein_coding TLK2 1 OTTHUMG00000179176.3 overlapping_locus +30530 chr17 HAVANA gene 62626031 62626453 423.0 + 0 ENSG00000277463.1 lincRNA AC080038.2 2 OTTHUMG00000186686.1 +30531 chr17 HAVANA gene 62626437 62627590 1154.0 - 0 ENSG00000274565.1 antisense AC080038.1 2 OTTHUMG00000186687.1 +30532 chr17 ENSEMBL gene 62661621 62661725 105.0 - 0 ENSG00000207382.1 misc_RNA RF00019 3 +30533 chr17 HAVANA gene 62679403 62681354 1952.0 - 0 ENSG00000279713.1 TEC AC080038.3 2 OTTHUMG00000179179.1 +30534 chr17 ENSEMBL gene 62683905 62684010 106.0 + 0 ENSG00000199697.1 snRNA RNU6-446P 3 +30535 chr17 HAVANA gene 62627401 62693597 6860.0 + 0 ENSG00000011028.13 protein_coding MRC2 2 OTTHUMG00000179178.2 ncRNA_host +30536 chr17 HAVANA gene 62699244 62737922 3892.0 + 0 ENSG00000265702.1 antisense AC005821.1 2 OTTHUMG00000179191.1 +30537 chr17 HAVANA gene 62701314 62808344 4920.0 - 0 ENSG00000173838.11 protein_coding MARCH10 2 OTTHUMG00000179192.3 +30538 chr17 HAVANA gene 62808500 62836371 1811.0 + 0 ENSG00000265000.1 lincRNA AC068512.1 2 OTTHUMG00000179193.1 +30539 chr17 HAVANA gene 62841101 62841645 545.0 + 0 ENSG00000264907.1 processed_pseudogene PRELID3BP3 1 OTTHUMG00000179194.1 pseudo_consens +30540 chr17 ENSEMBL gene 62944215 62944312 98.0 + 0 ENSG00000207552.1 miRNA MIR633 3 +30541 chr17 HAVANA gene 62950831 62951188 358.0 - 0 ENSG00000265262.1 transcribed_processed_pseudogene TRMT112P3 1 OTTHUMG00000179101.1 pseudo_consens,overlapping_locus +30542 chr17 HAVANA gene 62910021 62968549 2992.0 - 0 ENSG00000283538.2 lincRNA AC005972.3 2 OTTHUMG00000179100.3 overlapping_locus +30543 chr17 HAVANA gene 62978494 62978841 348.0 - 0 ENSG00000270324.1 processed_pseudogene AC005972.1 1 OTTHUMG00000184958.1 pseudo_consens +30544 chr17 HAVANA gene 63004672 63005152 481.0 - 0 ENSG00000272164.1 processed_pseudogene AC005972.2 2 OTTHUMG00000185382.1 +30545 chr17 HAVANA gene 63088162 63089197 1036.0 - 0 ENSG00000272383.1 processed_pseudogene AC006270.3 2 OTTHUMG00000185383.1 +30546 chr17 HAVANA gene 63117019 63130947 478.0 - 0 ENSG00000264513.1 antisense AC006270.1 2 OTTHUMG00000179111.1 +30547 chr17 HAVANA gene 63182166 63182817 652.0 + 0 ENSG00000264529.1 transcribed_processed_pseudogene AC006270.2 1 OTTHUMG00000179112.1 pseudo_consens,overlapping_locus +30548 chr17 HAVANA gene 63305262 63313521 562.0 - 0 ENSG00000263501.1 antisense AC005828.2 2 OTTHUMG00000179113.1 overlapping_locus +30549 chr17 HAVANA gene 63331984 63332539 556.0 - 0 ENSG00000271919.1 transcribed_processed_pseudogene AC005828.7 1 OTTHUMG00000185384.1 pseudo_consens,overlapping_locus +30550 chr17 HAVANA gene 63193930 63339053 656.0 - 0 ENSG00000233635.2 antisense AC015923.1 2 OTTHUMG00000132317.2 overlapping_locus +30551 chr17 HAVANA gene 63393355 63393586 232.0 + 0 ENSG00000271749.1 unprocessed_pseudogene AC005828.6 2 OTTHUMG00000185385.1 overlapping_locus +30552 chr17 HAVANA gene 63381231 63414312 524.0 - 0 ENSG00000226797.1 antisense AC005828.1 2 OTTHUMG00000132315.1 overlapping_locus +30553 chr17 HAVANA gene 63009556 63427699 22866.0 + 0 ENSG00000170921.15 protein_coding TANC2 2 OTTHUMG00000179103.2 overlapping_locus +30554 chr17 HAVANA gene 63391191 63431089 591.0 - 0 ENSG00000263644.1 antisense AC005828.3 2 OTTHUMG00000179114.1 overlapping_locus +30555 chr17 HAVANA gene 63430468 63432211 552.0 - 0 ENSG00000265282.1 lincRNA AC005828.4 2 OTTHUMG00000179115.1 overlapping_locus +30556 chr17 HAVANA gene 63432304 63446378 5320.0 - 0 ENSG00000008283.15 protein_coding CYB561 2 OTTHUMG00000179116.2 +30557 chr17 HAVANA gene 63454993 63455817 355.0 + 0 ENSG00000265971.1 lincRNA AC005828.5 2 OTTHUMG00000179117.1 +30558 chr17 HAVANA gene 63471604 63472093 490.0 + 0 ENSG00000228979.4 processed_pseudogene PPIAP55 1 OTTHUMG00000185386.1 pseudo_consens +30559 chr17 HAVANA gene 63477061 63498380 8365.0 + 0 ENSG00000159640.15 protein_coding ACE 2 OTTHUMG00000154927.5 overlapping_locus +30560 chr17 HAVANA gene 63507056 63519806 1973.0 + 0 ENSG00000224353.2 transcribed_unprocessed_pseudogene ACE3P 2 OTTHUMG00000155913.2 overlapping_locus +30561 chr17 HAVANA gene 63484823 63521848 4862.0 + 0 ENSG00000264813.6 protein_coding AC113554.1 2 OTTHUMG00000178900.1 overlapping_locus +30562 chr17 HAVANA gene 63523334 63548977 4211.0 + 0 ENSG00000173826.14 protein_coding KCNH6 2 OTTHUMG00000178901.1 +30563 chr17 ENSEMBL gene 63573242 63573345 104.0 - 0 ENSG00000200560.1 snRNA RNU6-288P 3 +30564 chr17 HAVANA gene 63550461 63594266 6575.0 + 0 ENSG00000136485.14 protein_coding DCAF7 2 OTTHUMG00000178902.5 +30565 chr17 HAVANA gene 63600872 63608365 2315.0 + 0 ENSG00000136463.7 protein_coding TACO1 2 OTTHUMG00000178904.1 +30566 chr17 HAVANA gene 63610772 63611184 413.0 - 0 ENSG00000270587.1 processed_pseudogene AC046185.2 1 OTTHUMG00000184859.1 pseudo_consens +30567 chr17 HAVANA gene 63636601 63637113 513.0 + 0 ENSG00000263883.1 transcribed_processed_pseudogene EEF1DP7 1 OTTHUMG00000178906.1 pseudo_consens,overlapping_locus +30568 chr17 HAVANA gene 63622415 63696303 6107.0 + 0 ENSG00000198909.7 protein_coding MAP3K3 2 OTTHUMG00000178905.1 overlapping_locus +30569 chr17 HAVANA gene 63695902 63701172 4745.0 - 0 ENSG00000136490.8 protein_coding LIMD2 2 OTTHUMG00000178907.2 +30570 chr17 HAVANA gene 63700847 63702670 1824.0 + 0 ENSG00000279369.1 TEC AC046185.3 2 OTTHUMG00000176077.1 +30571 chr17 HAVANA gene 63682336 63741986 10860.0 - 0 ENSG00000266173.6 protein_coding STRADA 1 OTTHUMG00000178908.12 overlapping_locus +30572 chr17 HAVANA gene 63702845 63752097 2128.0 - 0 ENSG00000125695.12 protein_coding AC046185.1 2 OTTHUMG00000179010.1 overlapping_locus +30573 chr17 HAVANA gene 63745250 63776351 4537.0 - 0 ENSG00000108588.13 protein_coding CCDC47 2 OTTHUMG00000178933.4 overlapping_locus +30574 chr17 HAVANA gene 63773603 63819317 8521.0 + 0 ENSG00000198231.12 protein_coding DDX42 2 OTTHUMG00000179011.3 +30575 chr17 HAVANA gene 63819433 63830012 5212.0 - 0 ENSG00000108592.16 protein_coding FTSJ3 2 OTTHUMG00000179012.4 +30576 chr17 HAVANA gene 63827152 63832026 4490.0 + 0 ENSG00000087191.12 protein_coding PSMC5 2 OTTHUMG00000179013.3 +30577 chr17 HAVANA gene 63832081 63843065 3734.0 - 0 ENSG00000108604.15 protein_coding SMARCD2 1 OTTHUMG00000179045.3 +30578 chr17 HAVANA gene 63849292 63864379 3546.0 + 0 ENSG00000240280.6 transcribed_unitary_pseudogene TCAM1P 1 OTTHUMG00000154404.2 +30579 chr17 HAVANA gene 63872012 63873766 1755.0 - 0 ENSG00000213218.10 protein_coding CSH2 2 OTTHUMG00000172283.1 +30580 chr17 HAVANA gene 63880215 63881935 1147.0 - 0 ENSG00000136487.17 protein_coding GH2 2 OTTHUMG00000172284.1 +30581 chr17 HAVANA gene 63885851 63886051 201.0 + 0 ENSG00000259533.1 unprocessed_pseudogene AC040958.1 2 OTTHUMG00000172285.1 +30582 chr17 HAVANA gene 63894909 63896661 1660.0 - 0 ENSG00000136488.14 protein_coding CSH1 2 OTTHUMG00000171947.1 +30583 chr17 HAVANA gene 63900643 63900879 237.0 + 0 ENSG00000259333.1 unprocessed_pseudogene AC127029.1 2 OTTHUMG00000172286.1 +30584 chr17 HAVANA gene 63917200 63918838 1196.0 - 0 ENSG00000259384.6 protein_coding GH1 2 OTTHUMG00000193348.1 overlapping_locus +30585 chr17 HAVANA gene 63909597 63918838 1817.0 - 0 ENSG00000204414.12 protein_coding CSHL1 2 OTTHUMG00000172287.4 +30586 chr17 HAVANA gene 63917203 63931385 1038.0 - 0 ENSG00000285947.1 protein_coding AC127029.3 2 OTTHUMG00000172293.4 overlapping_locus +30587 chr17 HAVANA gene 63928740 63932354 2080.0 - 0 ENSG00000007312.12 protein_coding CD79B 2 OTTHUMG00000172294.3 overlapping_locus +30588 chr17 HAVANA gene 63938554 63972918 8243.0 - 0 ENSG00000007314.12 protein_coding SCN4A 2 OTTHUMG00000179046.2 +30589 chr17 HAVANA gene 63972920 63989422 502.0 - 0 ENSG00000263489.1 lincRNA AC127029.2 2 OTTHUMG00000179047.1 +30590 chr17 HAVANA gene 63996071 63999899 2926.0 - 0 ENSG00000264954.1 lincRNA PRR29-AS1 2 OTTHUMG00000178593.1 +30591 chr17 HAVANA gene 63998351 64004304 4142.0 + 0 ENSG00000224383.7 protein_coding PRR29 2 OTTHUMG00000178594.2 +30592 chr17 HAVANA gene 64002594 64020634 3243.0 - 0 ENSG00000108622.10 protein_coding ICAM2 2 OTTHUMG00000178865.4 +30593 chr17 HAVANA gene 64039142 64130819 10864.0 - 0 ENSG00000178607.15 protein_coding ERN1 2 OTTHUMG00000178879.3 +30594 chr17 ENSEMBL gene 64146083 64146152 70.0 + 0 ENSG00000199753.1 snoRNA SNORD104 3 +30595 chr17 ENSEMBL gene 64146339 64146471 133.0 + 0 ENSG00000277887.1 snoRNA SNORA50C 3 +30596 chr17 ENSEMBL gene 64146337 64146471 135.0 + 0 ENSG00000281311.1 snoRNA RF00407 3 +30597 chr17 HAVANA gene 64145970 64146476 278.0 + 0 ENSG00000266402.3 lincRNA SNHG25 2 OTTHUMG00000178880.1 ncRNA_host +30598 chr17 HAVANA gene 64147227 64263301 9094.0 - 0 ENSG00000136478.7 protein_coding TEX2 2 OTTHUMG00000178881.2 +30599 chr17 HAVANA gene 64308316 64308690 375.0 - 0 ENSG00000256358.1 processed_pseudogene RPL31P57 1 OTTHUMG00000132313.1 pseudo_consens +30600 chr17 ENSEMBL gene 64390158 64390263 106.0 - 0 ENSG00000239823.2 misc_RNA RF00019 3 +30601 chr17 HAVANA gene 64319415 64413776 7759.0 - 0 ENSG00000261371.5 protein_coding PECAM1 2 OTTHUMG00000175829.3 ncRNA_host +30602 chr17 ENSEMBL gene 64425069 64425170 102.0 - 0 ENSG00000265031.1 miRNA MIR1273E 3 +30603 chr17 HAVANA gene 64449037 64468643 1816.0 + 0 ENSG00000271605.5 protein_coding MILR1 2 OTTHUMG00000185198.4 +30604 chr17 HAVANA gene 64491523 64491789 267.0 + 0 ENSG00000256826.1 processed_pseudogene ATP5MFP4 1 OTTHUMG00000132312.1 pseudo_consens +30605 chr17 HAVANA gene 64477785 64497036 3388.0 - 0 ENSG00000256525.6 protein_coding POLG2 1 OTTHUMG00000178899.2 +30606 chr17 ENSEMBL gene 64500774 64500839 66.0 - 0 ENSG00000284564.1 miRNA MIR3064 3 +30607 chr17 ENSEMBL gene 64501214 64501313 100.0 - 0 ENSG00000284368.1 miRNA MIR5047 3 +30608 chr17 HAVANA gene 64499616 64508199 7319.0 - 0 ENSG00000108654.14 protein_coding DDX5 1 OTTHUMG00000178936.10 ncRNA_host +30609 chr17 HAVANA gene 64506588 64542461 8048.0 + 0 ENSG00000258890.6 protein_coding CEP95 1 OTTHUMG00000179174.6 +30610 chr17 HAVANA gene 64572829 64573081 253.0 + 0 ENSG00000271779.1 processed_pseudogene AC009994.1 2 OTTHUMG00000185414.1 +30611 chr17 HAVANA gene 64542295 64662068 6961.0 - 0 ENSG00000108854.15 protein_coding SMURF2 2 OTTHUMG00000179189.2 +30612 chr17 HAVANA gene 64747264 64747492 229.0 - 0 ENSG00000270714.1 processed_pseudogene MINOS1P2 1 OTTHUMG00000184949.1 pseudo_consens +30613 chr17 HAVANA gene 64750420 64751311 892.0 + 0 ENSG00000265298.1 unprocessed_pseudogene AC132812.1 1 OTTHUMG00000179293.1 pseudo_consens +30614 chr17 HAVANA gene 64749918 64758603 848.0 - 0 ENSG00000266820.1 transcribed_unprocessed_pseudogene KPNA2P3 2 OTTHUMG00000179292.1 overlapping_locus +30615 chr17 HAVANA gene 64761912 64762710 492.0 - 0 ENSG00000263647.1 unprocessed_pseudogene BPTFP1 2 OTTHUMG00000179294.1 overlapping_locus +30616 chr17 HAVANA gene 64778842 64778937 96.0 - 0 ENSG00000265982.1 unprocessed_pseudogene AC103810.3 2 OTTHUMG00000179295.1 overlapping_locus +30617 chr17 ENSEMBL gene 64780759 64780824 66.0 + 0 ENSG00000278581.1 miRNA MIR6080 3 +30618 chr17 HAVANA gene 64749663 64781707 3038.0 - 0 ENSG00000215769.8 processed_transcript ARHGAP27P1-BPTFP1-KPNA2P3 2 OTTHUMG00000179291.1 overlapping_locus +30619 chr17 ENSEMBL gene 64822030 64822102 73.0 - 0 ENSG00000284172.1 miRNA MIR4315-2 3 +30620 chr17 ENSEMBL gene 64825765 64825819 55.0 - 0 ENSG00000252242.1 snRNA RNU7-115P 3 +30621 chr17 HAVANA gene 64779259 64837154 8469.0 - 0 ENSG00000214176.9 transcribed_unprocessed_pseudogene PLEKHM1P1 2 OTTHUMG00000179296.2 overlapping_locus +30622 chr17 HAVANA gene 64847386 64847728 343.0 + 0 ENSG00000272400.1 unprocessed_pseudogene AC103810.9 2 OTTHUMG00000185415.1 +30623 chr17 ENSEMBL gene 64871504 64871784 281.0 - 0 ENSG00000264840.1 misc_RNA RN7SL404P 3 +30624 chr17 HAVANA gene 64881091 64881181 91.0 + 0 ENSG00000272134.1 processed_pseudogene AC103810.6 2 OTTHUMG00000185416.1 +30625 chr17 HAVANA gene 64892728 64892845 118.0 + 0 ENSG00000272220.1 transcribed_processed_pseudogene AC103810.7 2 OTTHUMG00000185417.1 overlapping_locus +30626 chr17 HAVANA gene 64899766 64900716 560.0 + 0 ENSG00000266644.1 antisense AC103810.5 2 OTTHUMG00000179298.1 overlapping_locus +30627 chr17 HAVANA gene 64905883 64906018 136.0 - 0 ENSG00000271974.1 transcribed_processed_pseudogene RDM1P4 2 OTTHUMG00000185418.1 overlapping_locus +30628 chr17 HAVANA gene 64892729 64910180 1357.0 + 0 ENSG00000265218.1 antisense AC103810.2 2 OTTHUMG00000179297.1 overlapping_locus +30629 chr17 HAVANA gene 64854312 64919480 7641.0 - 0 ENSG00000176809.10 protein_coding LRRC37A3 2 OTTHUMG00000132307.4 ncRNA_host,overlapping_locus +30630 chr17 HAVANA gene 64927634 64934203 968.0 + 0 ENSG00000264057.1 transcribed_unprocessed_pseudogene AC103810.1 2 OTTHUMG00000179312.1 +30631 chr17 HAVANA gene 64936485 64940229 257.0 - 0 ENSG00000266155.2 unprocessed_pseudogene AC103810.4 2 OTTHUMG00000179313.2 +30632 chr17 HAVANA gene 64940606 64940717 112.0 + 0 ENSG00000272346.2 transcribed_unprocessed_pseudogene AC103810.8 2 OTTHUMG00000185419.2 overlapping_locus +30633 chr17 HAVANA gene 64943262 64951054 2474.0 + 0 ENSG00000265912.1 lincRNA AC037487.1 2 OTTHUMG00000179315.1 overlapping_locus +30634 chr17 HAVANA gene 64951498 64951609 112.0 - 0 ENSG00000272006.1 processed_pseudogene AC037487.3 2 OTTHUMG00000185420.1 +30635 chr17 HAVANA gene 64940602 64954177 625.0 + 0 ENSG00000280299.1 processed_transcript AC037487.4 2 OTTHUMG00000189463.1 overlapping_locus +30636 chr17 HAVANA gene 64953683 64956546 1059.0 + 0 ENSG00000232457.4 transcribed_unprocessed_pseudogene SLC16A6P1 2 OTTHUMG00000179314.1 overlapping_locus +30637 chr17 HAVANA gene 64966550 64975576 3858.0 - 0 ENSG00000214174.8 transcribed_unprocessed_pseudogene AMZ2P1 2 OTTHUMG00000132075.2 +30638 chr17 HAVANA gene 65051909 65053308 537.0 + 0 ENSG00000266598.1 antisense AC037487.2 2 OTTHUMG00000179317.1 +30639 chr17 HAVANA gene 65010715 65056839 5104.0 - 0 ENSG00000120063.9 protein_coding GNA13 1 OTTHUMG00000179316.1 +30640 chr17 HAVANA gene 65185319 65185482 164.0 - 0 ENSG00000265883.1 processed_pseudogene AC060771.1 1 OTTHUMG00000179351.1 pseudo_consens +30641 chr17 HAVANA gene 65100812 65227703 6990.0 + 0 ENSG00000108370.16 protein_coding RGS9 2 OTTHUMG00000179349.2 +30642 chr17 HAVANA gene 65457541 65458408 277.0 + 0 ENSG00000263520.1 lincRNA LINC02563 2 OTTHUMG00000179538.1 +30643 chr17 HAVANA gene 65528563 65561647 5226.0 - 0 ENSG00000168646.12 protein_coding AXIN2 1 OTTHUMG00000179353.3 overlapping_locus +30644 chr17 HAVANA gene 65538102 65641033 1616.0 - 0 ENSG00000266076.1 protein_coding AC004805.1 2 OTTHUMG00000179524.1 overlapping_locus +30645 chr17 HAVANA gene 65644308 65644617 310.0 + 0 ENSG00000271587.1 processed_pseudogene AC004805.3 1 OTTHUMG00000185049.2 pseudo_consens +30646 chr17 HAVANA gene 65654914 65655395 482.0 + 0 ENSG00000270870.1 processed_pseudogene AC004805.2 1 OTTHUMG00000184849.1 pseudo_consens +30647 chr17 HAVANA gene 65635538 66192084 7849.0 - 0 ENSG00000154240.16 protein_coding CEP112 2 OTTHUMG00000179474.5 overlapping_locus +30648 chr17 HAVANA gene 66197693 66198238 546.0 + 0 ENSG00000266707.1 processed_pseudogene PSMD7P1 1 OTTHUMG00000179529.1 pseudo_consens +30649 chr17 HAVANA gene 66212033 66256525 1332.0 - 0 ENSG00000091583.10 protein_coding APOH 1 OTTHUMG00000179530.4 +30650 chr17 ENSEMBL gene 66267743 66267848 106.0 + 0 ENSG00000252653.1 rRNA_pseudogene RNA5SP444 3 +30651 chr17 HAVANA gene 66278059 66278664 606.0 + 0 ENSG00000284242.1 unprocessed_pseudogene AC009452.1 2 OTTHUMG00000191922.1 +30652 chr17 ENSEMBL gene 66364029 66364320 292.0 + 0 ENSG00000244044.3 misc_RNA RN7SL735P 3 +30653 chr17 HAVANA gene 66398069 66416854 2647.0 - 0 ENSG00000264630.5 antisense PRKCA-AS1 2 OTTHUMG00000179537.1 +30654 chr17 ENSEMBL gene 66638271 66638374 104.0 + 0 ENSG00000252685.1 snRNA RNU6-928P 3 +30655 chr17 ENSEMBL gene 66639269 66639383 115.0 + 0 ENSG00000251698.1 rRNA_pseudogene RNA5SP445 3 +30656 chr17 HAVANA gene 66676372 66677404 484.0 + 0 ENSG00000229330.2 sense_intronic AC006947.1 2 OTTHUMG00000132305.2 overlapping_locus +30657 chr17 ENSEMBL gene 66787072 66787168 97.0 + 0 ENSG00000207943.1 miRNA MIR634 3 +30658 chr17 HAVANA gene 66302636 66810743 11152.0 + 0 ENSG00000154229.11 protein_coding PRKCA 2 OTTHUMG00000179533.2 ncRNA_host,overlapping_locus +30659 chr17 HAVANA gene 66835117 66885486 1311.0 + 0 ENSG00000075429.8 protein_coding CACNG5 2 OTTHUMG00000166468.1 +30660 chr17 ENSEMBL gene 66895491 66895572 82.0 + 0 ENSG00000251764.1 rRNA_pseudogene RNA5SP446 3 +30661 chr17 HAVANA gene 67019934 67021743 460.0 - 0 ENSG00000264491.1 antisense AC005544.1 2 OTTHUMG00000179551.1 +30662 chr17 HAVANA gene 67032409 67033290 229.0 - 0 ENSG00000265664.1 antisense AC005544.2 2 OTTHUMG00000179552.1 +30663 chr17 HAVANA gene 66964910 67033398 3380.0 + 0 ENSG00000075461.5 protein_coding CACNG4 2 OTTHUMG00000179550.1 +30664 chr17 HAVANA gene 67044590 67056797 1266.0 + 0 ENSG00000108878.4 protein_coding CACNG1 2 OTTHUMG00000179553.2 +30665 chr17 HAVANA gene 67224728 67225041 314.0 + 0 ENSG00000213180.4 processed_pseudogene RPL36AP48 1 OTTHUMG00000157925.1 pseudo_consens,overlapping_locus +30666 chr17 HAVANA gene 67224303 67225541 380.0 + 0 ENSG00000264421.1 antisense AC007448.2 2 OTTHUMG00000179574.1 overlapping_locus +30667 chr17 HAVANA gene 67244837 67245806 689.0 + 0 ENSG00000266473.1 antisense AC007448.3 2 OTTHUMG00000179556.1 +30668 chr17 HAVANA gene 67070438 67245989 15677.0 - 0 ENSG00000198265.11 protein_coding HELZ 1 OTTHUMG00000179555.3 +30669 chr17 ENSEMBL gene 67268110 67268228 119.0 + 0 ENSG00000200619.1 rRNA_pseudogene RNA5SP447 3 +30670 chr17 ENSEMBL gene 67271469 67271607 139.0 + 0 ENSG00000207410.1 snoRNA RF00393 3 +30671 chr17 HAVANA gene 67244282 67273503 2511.0 + 0 ENSG00000285877.1 antisense AC007448.4 2 OTTHUMG00000193103.1 ncRNA_host +30672 chr17 HAVANA gene 67276118 67276351 234.0 - 0 ENSG00000264093.1 processed_pseudogene AC007448.1 1 OTTHUMG00000179557.1 pseudo_consens +30673 chr17 HAVANA gene 67337916 67366627 5364.0 - 0 ENSG00000197170.9 protein_coding PSMD12 2 OTTHUMG00000140376.2 +30674 chr17 ENSEMBL gene 67408774 67408881 108.0 - 0 ENSG00000201547.1 misc_RNA RF00019 3 +30675 chr17 ENSEMBL gene 67457023 67457290 268.0 - 0 ENSG00000244610.3 misc_RNA RN7SL756P 3 +30676 chr17 ENSEMBL gene 67471489 67471585 97.0 + 0 ENSG00000207688.2 miRNA MIR548AA2 3 +30677 chr17 ENSEMBL gene 67471489 67471585 97.0 - 0 ENSG00000263690.2 miRNA MIR548D2 3 +30678 chr17 HAVANA gene 67524481 67525422 612.0 + 0 ENSG00000264754.1 sense_intronic AC110921.1 2 OTTHUMG00000179581.1 overlapping_locus +30679 chr17 HAVANA gene 67611277 67613822 2546.0 + 0 ENSG00000279917.1 TEC AC079331.2 2 OTTHUMG00000179603.1 overlapping_locus +30680 chr17 HAVANA gene 67637774 67638973 1200.0 + 0 ENSG00000279361.1 TEC AC079331.1 2 OTTHUMG00000179604.1 overlapping_locus +30681 chr17 HAVANA gene 67377281 67697261 7819.0 + 0 ENSG00000154217.14 protein_coding PITPNC1 1 OTTHUMG00000179602.2 ncRNA_host,overlapping_locus +30682 chr17 ENSEMBL gene 67740669 67740799 131.0 + 0 ENSG00000200394.1 snoRNA SNORA38B 3 +30683 chr17 HAVANA gene 67717833 67744531 4713.0 + 0 ENSG00000130935.9 protein_coding NOL11 1 OTTHUMG00000179777.2 ncRNA_host +30684 chr17 HAVANA gene 67774591 67777324 862.0 - 0 ENSG00000266858.1 unprocessed_pseudogene RPSAP67 1 OTTHUMG00000179778.1 pseudo_consens +30685 chr17 HAVANA gene 67784753 67785293 541.0 + 0 ENSG00000213179.4 processed_pseudogene RPL17P41 1 OTTHUMG00000157927.1 pseudo_consens +30686 chr17 HAVANA gene 67950885 67951746 709.0 - 0 ENSG00000266717.1 antisense AC134407.1 2 OTTHUMG00000179779.1 +30687 chr17 HAVANA gene 67955314 67957291 1978.0 + 0 ENSG00000279573.1 TEC AC134407.2 2 OTTHUMG00000179780.1 overlapping_locus +30688 chr17 HAVANA gene 67973934 67976072 2139.0 + 0 ENSG00000279880.1 TEC AC134407.3 2 OTTHUMG00000179781.1 overlapping_locus +30689 chr17 ENSEMBL gene 67977698 67977972 275.0 + 0 ENSG00000265052.2 misc_RNA RN7SL622P 3 +30690 chr17 HAVANA gene 67825524 67984378 15098.0 + 0 ENSG00000171634.17 protein_coding BPTF 1 OTTHUMG00000132254.5 ncRNA_host,overlapping_locus +30691 chr17 HAVANA gene 67991101 67996431 2396.0 - 0 ENSG00000186665.9 protein_coding C17orf58 2 OTTHUMG00000179782.2 +30692 chr17 HAVANA gene 68035519 68046842 3140.0 + 0 ENSG00000182481.8 protein_coding KPNA2 2 OTTHUMG00000179784.2 +30693 chr17 HAVANA gene 68095068 68095757 471.0 + 0 ENSG00000266117.1 processed_pseudogene FBXO36P1 2 OTTHUMG00000179785.1 +30694 chr17 HAVANA gene 68096046 68101474 650.0 - 0 ENSG00000265055.1 lincRNA AC145343.1 2 OTTHUMG00000179786.1 +30695 chr17 HAVANA gene 68101908 68115518 734.0 + 0 ENSG00000237854.3 transcribed_unprocessed_pseudogene LINC00674 2 OTTHUMG00000132303.3 +30696 chr17 HAVANA gene 68126666 68129586 2921.0 + 0 ENSG00000278730.1 lincRNA AC005332.6 2 OTTHUMG00000186693.1 +30697 chr17 HAVANA gene 68131462 68131907 446.0 + 0 ENSG00000274561.1 lincRNA AC005332.3 2 OTTHUMG00000186694.1 +30698 chr17 HAVANA gene 68134675 68135604 930.0 - 0 ENSG00000267352.1 processed_pseudogene SH3GL1P3 1 OTTHUMG00000180161.1 pseudo_consens,overlapping_locus +30699 chr17 HAVANA gene 68133201 68135935 2735.0 + 0 ENSG00000277476.1 lincRNA AC005332.5 2 OTTHUMG00000186695.2 +30700 chr17 HAVANA gene 68125777 68152468 3815.0 - 0 ENSG00000267023.5 transcribed_unprocessed_pseudogene LRRC37A16P 1 OTTHUMG00000180160.2 pseudo_consens,overlapping_locus +30701 chr17 HAVANA gene 68152776 68159043 579.0 - 0 ENSG00000267708.1 unprocessed_pseudogene RDM1P3 2 OTTHUMG00000180172.2 +30702 chr17 HAVANA gene 68188547 68189165 619.0 + 0 ENSG00000278740.1 lincRNA AC005332.7 2 OTTHUMG00000186696.1 +30703 chr17 HAVANA gene 68189884 68192802 2919.0 + 0 ENSG00000267731.1 lincRNA AC005332.2 2 OTTHUMG00000180173.1 +30704 chr17 HAVANA gene 68198921 68199596 676.0 + 0 ENSG00000267472.1 processed_pseudogene ARHGAP27P2 1 OTTHUMG00000180174.1 pseudo_consens +30705 chr17 HAVANA gene 68205489 68207493 2005.0 + 0 ENSG00000274712.1 lincRNA AC005332.4 2 OTTHUMG00000186697.1 +30706 chr17 HAVANA gene 68246629 68247938 1310.0 - 0 ENSG00000265100.1 antisense AC005332.1 2 OTTHUMG00000179801.1 +30707 chr17 HAVANA gene 68247574 68257164 4214.0 + 0 ENSG00000196704.11 protein_coding AMZ2 2 OTTHUMG00000179802.3 +30708 chr17 HAVANA gene 68267026 68291267 4061.0 - 0 ENSG00000108932.11 protein_coding SLC16A6 2 OTTHUMG00000179812.3 +30709 chr17 HAVANA gene 68259182 68422731 6587.0 + 0 ENSG00000141337.12 protein_coding ARSG 2 OTTHUMG00000179810.6 overlapping_locus +30710 chr17 ENSEMBL gene 68424451 68424548 98.0 - 0 ENSG00000207561.1 miRNA MIR635 3 +30711 chr17 HAVANA gene 68420948 68457513 3402.0 - 0 ENSG00000070540.12 protein_coding WIPI1 2 OTTHUMG00000179873.2 ncRNA_host +30712 chr17 HAVANA gene 68413623 68524949 1863.0 + 0 ENSG00000267009.6 processed_transcript AC007780.1 2 OTTHUMG00000180138.3 overlapping_locus +30713 chr17 HAVANA gene 68511780 68551319 6821.0 + 0 ENSG00000108946.14 protein_coding PRKAR1A 1 OTTHUMG00000180128.5 overlapping_locus +30714 chr17 HAVANA gene 68557516 68582577 384.0 + 0 ENSG00000267461.1 lincRNA AC079210.1 2 OTTHUMG00000180162.1 +30715 chr17 HAVANA gene 68535113 68601389 6203.0 - 0 ENSG00000108950.11 protein_coding FAM20A 2 OTTHUMG00000180152.2 +30716 chr17 HAVANA gene 68691809 68716064 786.0 - 0 ENSG00000283376.1 unitary_pseudogene AC011591.2 2 OTTHUMG00000191784.1 +30717 chr17 HAVANA gene 68591796 68763882 3686.0 + 0 ENSG00000267659.5 lincRNA LINC01482 2 OTTHUMG00000180190.1 +30718 chr17 HAVANA gene 68793549 68797822 518.0 - 0 ENSG00000267250.1 lincRNA AC011591.1 2 OTTHUMG00000180191.1 +30719 chr17 HAVANA gene 68867292 68955392 11243.0 - 0 ENSG00000141338.13 protein_coding ABCA8 2 OTTHUMG00000180192.4 +30720 chr17 HAVANA gene 68944531 69042784 2990.0 + 0 ENSG00000231749.3 antisense ABCA9-AS1 2 OTTHUMG00000140370.3 +30721 chr17 HAVANA gene 68974488 69061064 9139.0 - 0 ENSG00000154258.16 protein_coding ABCA9 2 OTTHUMG00000140371.3 +30722 chr17 HAVANA gene 69094289 69095499 1211.0 - 0 ENSG00000267361.1 processed_pseudogene SEC24AP1 1 OTTHUMG00000180259.1 pseudo_consens,overlapping_locus +30723 chr17 ENSEMBL gene 69099564 69099632 69.0 - 0 ENSG00000283385.1 miRNA MIR4524A 3 +30724 chr17 ENSEMBL gene 69099542 69099656 115.0 + 0 ENSG00000265331.1 miRNA MIR4524B 3 +30725 chr17 HAVANA gene 69078702 69141888 14151.0 - 0 ENSG00000154262.12 protein_coding ABCA6 2 OTTHUMG00000180258.1 ncRNA_host,overlapping_locus +30726 chr17 HAVANA gene 69232963 69235012 2050.0 - 0 ENSG00000278873.1 TEC PRO1804 2 OTTHUMG00000180278.1 overlapping_locus +30727 chr17 HAVANA gene 69242230 69244097 511.0 + 0 ENSG00000285931.1 antisense AC005495.1 2 OTTHUMG00000192759.1 +30728 chr17 HAVANA gene 69147214 69244846 8405.0 - 0 ENSG00000154263.17 protein_coding ABCA10 2 OTTHUMG00000164716.6 overlapping_locus +30729 chr17 HAVANA gene 69318733 69318961 229.0 + 0 ENSG00000267203.1 processed_pseudogene SNRPGP4 1 OTTHUMG00000180310.1 pseudo_consens +30730 chr17 HAVANA gene 69244311 69327244 13158.0 - 0 ENSG00000154265.15 protein_coding ABCA5 2 OTTHUMG00000180303.3 overlapping_locus +30731 chr17 ENSEMBL gene 69355133 69355218 86.0 - 0 ENSG00000252352.1 snoRNA RF00561 3 +30732 chr17 HAVANA gene 69433084 69435533 2450.0 + 0 ENSG00000278972.1 TEC AC015920.1 2 OTTHUMG00000180312.1 overlapping_locus +30733 chr17 HAVANA gene 69477139 69501755 584.0 - 0 ENSG00000267653.1 lincRNA AC002546.1 2 OTTHUMG00000180313.1 +30734 chr17 HAVANA gene 69414698 69553861 16655.0 + 0 ENSG00000108984.14 protein_coding MAP2K6 1 OTTHUMG00000180311.3 overlapping_locus +30735 chr17 HAVANA gene 69707193 69707373 181.0 - 0 ENSG00000267184.1 processed_pseudogene AC002545.1 1 OTTHUMG00000180320.1 pseudo_consens +30736 chr17 HAVANA gene 69577251 69903000 4173.0 + 0 ENSG00000227517.6 lincRNA LINC01483 2 OTTHUMG00000132249.3 +30737 chr17 ENSEMBL gene 69985986 69986094 109.0 + 0 ENSG00000199801.1 misc_RNA RF00019 3 +30738 chr17 HAVANA gene 69961674 69994845 1481.0 + 0 ENSG00000237560.6 lincRNA LINC01497 2 OTTHUMG00000132247.2 ncRNA_host +30739 chr17 HAVANA gene 70051277 70068095 1163.0 + 0 ENSG00000267603.1 lincRNA LINC01028 2 OTTHUMG00000180348.1 overlapping_locus +30740 chr17 HAVANA gene 70017324 70128859 1100.0 - 0 ENSG00000230258.6 antisense AC005208.1 2 OTTHUMG00000132246.3 +30741 chr17 HAVANA gene 70053429 70135608 6340.0 + 0 ENSG00000153822.13 protein_coding KCNJ16 2 OTTHUMG00000180349.4 overlapping_locus +30742 chr17 HAVANA gene 70166961 70169402 2442.0 - 0 ENSG00000267365.1 antisense KCNJ2-AS1 2 OTTHUMG00000180350.1 +30743 chr17 HAVANA gene 70168673 70180048 5577.0 + 0 ENSG00000123700.4 protein_coding KCNJ2 2 OTTHUMG00000180351.3 +30744 chr17 HAVANA gene 70241324 70241761 438.0 + 0 ENSG00000267170.1 processed_pseudogene CALM2P1 1 OTTHUMG00000180352.1 pseudo_consens +30745 chr17 HAVANA gene 70312831 70368916 734.0 - 0 ENSG00000267109.1 lincRNA AC011990.1 2 OTTHUMG00000180360.1 +30746 chr17 HAVANA gene 70628917 70629265 349.0 - 0 ENSG00000267471.1 processed_pseudogene AC005771.1 2 OTTHUMG00000180361.1 +30747 chr17 HAVANA gene 70778604 70779230 627.0 - 0 ENSG00000271239.1 lincRNA AC007423.1 2 OTTHUMG00000185122.1 +30748 chr17 HAVANA gene 71011997 71013587 1256.0 + 0 ENSG00000271101.1 processed_pseudogene AC005181.1 1 OTTHUMG00000184848.1 pseudo_consens +30749 chr17 HAVANA gene 71097775 71202177 2059.0 - 0 ENSG00000260785.1 lincRNA CASC17 2 OTTHUMG00000176079.1 +30750 chr17 ENSEMBL gene 71298156 71298218 63.0 - 0 ENSG00000238759.1 snRNA RNU7-155P 3 +30751 chr17 HAVANA gene 71596338 71597279 570.0 + 0 ENSG00000225818.1 lincRNA AC118653.1 2 OTTHUMG00000132240.1 +30752 chr17 HAVANA gene 71620978 71621436 459.0 + 0 ENSG00000228118.3 processed_pseudogene MYL6P5 1 OTTHUMG00000132241.1 pseudo_consens +30753 chr17 HAVANA gene 71829870 71871750 703.0 - 0 ENSG00000283517.1 lincRNA AC005144.1 2 OTTHUMG00000191805.1 +30754 chr17 HAVANA gene 72021851 72034092 540.0 - 0 ENSG00000228639.7 lincRNA ROCR 1 OTTHUMG00000132237.4 +30755 chr17 HAVANA gene 72030291 72041297 4019.0 + 0 ENSG00000256124.5 lincRNA LINC01152 2 OTTHUMG00000168039.2 +30756 chr17 HAVANA gene 72072333 72093481 2063.0 + 0 ENSG00000226101.1 lincRNA LINC02097 1 OTTHUMG00000132235.1 +30757 chr17 HAVANA gene 72121020 72126420 3935.0 + 0 ENSG00000125398.6 protein_coding SOX9 2 OTTHUMG00000166300.2 +30758 chr17 HAVANA gene 72034107 72237203 10700.0 - 0 ENSG00000234899.9 processed_transcript SOX9-AS1 1 OTTHUMG00000132234.7 +30759 chr17 HAVANA gene 72342940 72355136 1833.0 + 0 ENSG00000264026.1 lincRNA LINC02003 2 OTTHUMG00000178301.1 +30760 chr17 HAVANA gene 72425939 72428852 833.0 + 0 ENSG00000263680.2 lincRNA AC007639.1 2 OTTHUMG00000178302.2 +30761 chr17 HAVANA gene 72627231 72627624 394.0 + 0 ENSG00000243514.2 processed_pseudogene RPL32P33 1 OTTHUMG00000157932.2 pseudo_consens +30762 chr17 HAVANA gene 72290091 72640472 27605.0 - 0 ENSG00000227036.7 processed_transcript LINC00511 2 OTTHUMG00000132227.13 +30763 chr17 HAVANA gene 72642731 72644490 889.0 + 0 ENSG00000263893.2 lincRNA AC080037.1 1 OTTHUMG00000178340.2 +30764 chr17 ENSEMBL gene 72663823 72664152 330.0 - 0 ENSG00000200783.1 misc_RNA RN7SKP180 3 +30765 chr17 ENSEMBL gene 72818836 72818972 137.0 - 0 ENSG00000252274.1 scaRNA RF00422 3 +30766 chr17 HAVANA gene 72839039 72839718 624.0 + 0 ENSG00000264196.1 antisense AC011120.1 2 OTTHUMG00000178318.1 +30767 chr17 HAVANA gene 73067870 73068288 419.0 - 0 ENSG00000266501.1 processed_pseudogene AC025198.1 1 OTTHUMG00000178319.1 pseudo_consens,overlapping_locus +30768 chr17 HAVANA gene 72645949 73092712 5583.0 - 0 ENSG00000133195.11 protein_coding SLC39A11 1 OTTHUMG00000178306.5 ncRNA_host,overlapping_locus +30769 chr17 HAVANA gene 73163035 73163359 325.0 - 0 ENSG00000265469.1 processed_pseudogene POLR3KP2 1 OTTHUMG00000178342.1 pseudo_consens +30770 chr17 HAVANA gene 73165012 73176633 7852.0 + 0 ENSG00000180616.8 protein_coding SSTR2 1 OTTHUMG00000178343.3 overlapping_locus,retrogene +30771 chr17 HAVANA gene 73164977 73196593 588.0 + 0 ENSG00000264860.1 processed_transcript AC097641.1 2 OTTHUMG00000178355.1 overlapping_locus +30772 chr17 HAVANA gene 73202968 73203431 464.0 - 0 ENSG00000277728.1 antisense AC097641.2 2 OTTHUMG00000186698.1 +30773 chr17 HAVANA gene 73192632 73208507 5317.0 + 0 ENSG00000166685.11 protein_coding COG1 2 OTTHUMG00000178344.2 overlapping_locus +30774 chr17 HAVANA gene 73207353 73236753 3162.0 - 0 ENSG00000133193.12 protein_coding FAM104A 1 OTTHUMG00000150564.5 +30775 chr17 HAVANA gene 73243093 73244706 321.0 + 0 ENSG00000265010.1 sense_intronic AC087301.1 2 OTTHUMG00000178418.1 overlapping_locus +30776 chr17 HAVANA gene 73232233 73248947 4663.0 + 0 ENSG00000141219.15 protein_coding C17orf80 2 OTTHUMG00000178417.2 overlapping_locus +30777 chr17 HAVANA gene 73248449 73262352 1528.0 - 0 ENSG00000187959.9 protein_coding CPSF4L 2 OTTHUMG00000132640.2 +30778 chr17 HAVANA gene 73283624 73312175 5007.0 - 0 ENSG00000179604.9 protein_coding CDC42EP4 1 OTTHUMG00000178419.2 +30779 chr17 HAVANA gene 73513469 73521407 4838.0 + 0 ENSG00000264985.3 antisense AC124804.1 2 OTTHUMG00000178451.3 +30780 chr17 HAVANA gene 73641026 73643106 173.0 + 0 ENSG00000264750.1 antisense AC032019.1 2 OTTHUMG00000178422.1 +30781 chr17 HAVANA gene 73334384 73644089 11607.0 - 0 ENSG00000069188.16 protein_coding SDK2 2 OTTHUMG00000152726.4 +30782 chr17 HAVANA gene 73662568 73663848 403.0 - 0 ENSG00000265935.1 lincRNA AC032019.2 2 OTTHUMG00000178453.1 +30783 chr17 HAVANA gene 73737854 73756557 1140.0 + 0 ENSG00000263574.1 lincRNA AC125421.1 2 OTTHUMG00000178458.1 +30784 chr17 HAVANA gene 73786802 73800793 2498.0 + 0 ENSG00000234721.2 lincRNA LINC02092 2 OTTHUMG00000132223.2 +30785 chr17 HAVANA gene 73750330 73828520 1268.0 - 0 ENSG00000177338.13 lincRNA LINC00469 2 OTTHUMG00000167833.3 +30786 chr17 HAVANA gene 73831572 73836019 1027.0 - 0 ENSG00000265927.1 lincRNA AC125421.2 2 OTTHUMG00000178574.1 +30787 chr17 HAVANA gene 73894749 73911878 419.0 - 0 ENSG00000266765.1 lincRNA AC137735.1 2 OTTHUMG00000178575.1 +30788 chr17 HAVANA gene 73926421 73949906 1021.0 - 0 ENSG00000285648.1 lincRNA AC137735.2 2 OTTHUMG00000192666.1 +30789 chr17 HAVANA gene 74043452 74154212 885.0 - 0 ENSG00000266357.5 lincRNA LINC02074 2 OTTHUMG00000178576.1 +30790 chr17 HAVANA gene 74203582 74210655 3829.0 + 0 ENSG00000172809.12 protein_coding RPL38 2 OTTHUMG00000166016.2 +30791 chr17 HAVANA gene 74209980 74213342 2522.0 - 0 ENSG00000246731.2 antisense MGC16275 1 OTTHUMG00000166017.1 +30792 chr17 HAVANA gene 74213514 74262020 5375.0 + 0 ENSG00000141540.10 protein_coding TTYH2 1 OTTHUMG00000166018.3 +30793 chr17 HAVANA gene 74256896 74262020 513.0 - 0 ENSG00000264272.1 antisense AC100786.1 2 OTTHUMG00000178577.1 +30794 chr17 HAVANA gene 74307210 74309790 651.0 - 0 ENSG00000266106.1 antisense AC103809.1 2 OTTHUMG00000178579.1 +30795 chr17 HAVANA gene 74274247 74314884 2851.0 + 0 ENSG00000171595.13 protein_coding DNAI2 2 OTTHUMG00000178578.1 +30796 chr17 HAVANA gene 74326210 74355820 5640.0 + 0 ENSG00000196169.14 protein_coding KIF19 2 OTTHUMG00000150694.3 +30797 chr17 HAVANA gene 74356416 74361946 1805.0 - 0 ENSG00000204347.3 protein_coding BTBD17 2 OTTHUMG00000178580.1 +30798 chr17 HAVANA gene 74367407 74372622 1608.0 + 0 ENSG00000257008.6 protein_coding GPR142 2 OTTHUMG00000178581.2 +30799 chr17 ENSEMBL gene 74417594 74417704 111.0 - 0 ENSG00000200021.1 rRNA_pseudogene RNA5SP448 3 +30800 chr17 HAVANA gene 74424851 74451653 8005.0 + 0 ENSG00000170412.16 protein_coding GPRC5C 1 OTTHUMG00000067613.6 +30801 chr17 HAVANA gene 74466399 74484796 2703.0 + 0 ENSG00000167851.14 protein_coding CD300A 1 OTTHUMG00000067612.5 +30802 chr17 HAVANA gene 74521174 74531474 2720.0 - 0 ENSG00000178789.8 protein_coding CD300LB 2 OTTHUMG00000067606.3 +30803 chr17 HAVANA gene 74541108 74546143 1517.0 - 0 ENSG00000167850.3 protein_coding CD300C 2 OTTHUMG00000067608.1 +30804 chr17 HAVANA gene 74549399 74552737 857.0 - 0 ENSG00000236770.1 unprocessed_pseudogene AC079325.1 2 OTTHUMG00000067610.1 +30805 chr17 HAVANA gene 74560701 74567343 606.0 - 0 ENSG00000284690.1 polymorphic_pseudogene CD300H 2 OTTHUMG00000067607.2 +30806 chr17 HAVANA gene 74579365 74592283 1303.0 - 0 ENSG00000204345.1 protein_coding CD300LD 2 OTTHUMG00000067614.1 +30807 chr17 HAVANA gene 74584679 74594209 2778.0 + 0 ENSG00000182352.8 antisense C17orf77 2 OTTHUMG00000067611.4 +30808 chr17 HAVANA gene 74599840 74607229 3602.0 + 0 ENSG00000261222.2 lincRNA AC064805.1 2 OTTHUMG00000176084.2 +30809 chr17 HAVANA gene 74609887 74623738 3752.0 - 0 ENSG00000186407.6 protein_coding CD300E 1 OTTHUMG00000067605.4 +30810 chr17 HAVANA gene 74672712 74677600 523.0 - 0 ENSG00000264659.1 antisense AC064805.2 2 OTTHUMG00000178861.1 +30811 chr17 HAVANA gene 74694311 74712978 2161.0 - 0 ENSG00000186074.18 protein_coding CD300LF 2 OTTHUMG00000067609.4 +30812 chr17 HAVANA gene 74670578 74747335 5074.0 + 0 ENSG00000172794.19 protein_coding RAB37 1 OTTHUMG00000134282.4 +30813 chr17 ENSEMBL gene 74748613 74748699 87.0 + 0 ENSG00000284186.1 miRNA MIR3615 3 +30814 chr17 HAVANA gene 74747319 74748912 565.0 - 0 ENSG00000266036.1 antisense AC016888.1 2 OTTHUMG00000178862.1 +30815 chr17 HAVANA gene 74748652 74769353 2315.0 + 0 ENSG00000109062.11 protein_coding SLC9A3R1 2 OTTHUMG00000178863.3 +30816 chr17 HAVANA gene 74770547 74776367 4049.0 - 0 ENSG00000109065.11 protein_coding NAT9 1 OTTHUMG00000178870.5 +30817 chr17 HAVANA gene 74776483 74839779 4983.0 + 0 ENSG00000109066.13 protein_coding TMEM104 1 OTTHUMG00000179025.2 +30818 chr17 HAVANA gene 74842023 74861504 8574.0 - 0 ENSG00000161509.13 protein_coding GRIN2C 2 OTTHUMG00000044524.3 +30819 chr17 HAVANA gene 74862497 74873031 3599.0 - 0 ENSG00000161513.11 protein_coding FDXR 1 OTTHUMG00000179026.8 +30820 chr17 HAVANA gene 74877299 74893781 2861.0 - 0 ENSG00000172782.11 protein_coding FADS6 2 OTTHUMG00000179188.5 +30821 chr17 HAVANA gene 74916084 74923256 3558.0 - 0 ENSG00000182040.8 protein_coding USH1G 2 OTTHUMG00000178864.4 +30822 chr17 HAVANA gene 74924275 74933912 2778.0 + 0 ENSG00000183034.12 protein_coding OTOP2 2 OTTHUMG00000179215.1 +30823 chr17 HAVANA gene 74935719 74949992 2516.0 + 0 ENSG00000182938.5 protein_coding OTOP3 2 OTTHUMG00000179216.3 +30824 chr17 HAVANA gene 74950743 74973166 6196.0 - 0 ENSG00000167861.15 protein_coding HID1 1 OTTHUMG00000166490.6 +30825 chr17 HAVANA gene 74970704 74975728 815.0 + 0 ENSG00000263586.1 antisense HID1-AS1 2 OTTHUMG00000179217.1 +30826 chr17 HAVANA gene 74987632 75005800 3536.0 + 0 ENSG00000109089.7 protein_coding CDR2L 2 OTTHUMG00000150435.1 +30827 chr17 HAVANA gene 75012670 75021261 1108.0 + 0 ENSG00000167862.9 protein_coding MRPL58 2 OTTHUMG00000179218.3 +30828 chr17 ENSEMBL gene 75031097 75031186 90.0 + 0 ENSG00000252545.1 snRNA RNU6-362P 3 +30829 chr17 ENSEMBL gene 75041740 75042015 276.0 + 0 ENSG00000239607.3 misc_RNA RN7SL573P 3 +30830 chr17 HAVANA gene 75038863 75046985 3231.0 - 0 ENSG00000167863.11 protein_coding ATP5PD 2 OTTHUMG00000179219.1 +30831 chr17 HAVANA gene 75060491 75060620 130.0 - 0 ENSG00000270993.1 processed_pseudogene AC111186.1 1 OTTHUMG00000184948.1 pseudo_consens +30832 chr17 HAVANA gene 75032575 75065889 5279.0 + 0 ENSG00000180901.10 protein_coding KCTD2 2 OTTHUMG00000179276.1 ncRNA_host +30833 chr17 HAVANA gene 75074306 75079549 2848.0 + 0 ENSG00000232724.1 unitary_pseudogene TRIM80P 2 OTTHUMG00000154700.1 +30834 chr17 ENSEMBL gene 75089862 75089974 113.0 - 0 ENSG00000206713.1 misc_RNA RF00019 3 +30835 chr17 HAVANA gene 75087727 75106162 3089.0 + 0 ENSG00000170190.15 protein_coding SLC16A5 1 OTTHUMG00000179277.4 +30836 chr17 HAVANA gene 75109952 75130265 2823.0 + 0 ENSG00000125449.6 protein_coding ARMC7 1 OTTHUMG00000179345.1 +30837 chr17 HAVANA gene 75130225 75131795 1571.0 - 0 ENSG00000125458.6 protein_coding NT5C 2 OTTHUMG00000179346.2 +30838 chr17 HAVANA gene 75130883 75133043 2161.0 + 0 ENSG00000279035.1 TEC AC022211.4 2 OTTHUMG00000179347.1 +30839 chr17 HAVANA gene 75138416 75141350 400.0 - 0 ENSG00000265800.1 sense_intronic AC022211.3 2 OTTHUMG00000179478.1 overlapping_locus +30840 chr17 ENSEMBL gene 75145670 75145762 93.0 + 0 ENSG00000252042.1 misc_RNA RF00019 3 +30841 chr17 HAVANA gene 75145261 75146546 717.0 - 0 ENSG00000263786.1 sense_intronic AC022211.1 2 OTTHUMG00000179479.1 overlapping_locus +30842 chr17 HAVANA gene 75135248 75168281 3414.0 - 0 ENSG00000189159.15 protein_coding JPT1 2 OTTHUMG00000154521.3 overlapping_locus +30843 chr17 HAVANA gene 75165586 75182983 3372.0 - 0 ENSG00000188612.11 protein_coding SUMO2 1 OTTHUMG00000179481.2 overlapping_locus +30844 chr17 HAVANA gene 75205659 75235758 5193.0 + 0 ENSG00000125450.10 protein_coding NUP85 1 OTTHUMG00000179482.3 +30845 chr17 HAVANA gene 75236599 75262363 6640.0 - 0 ENSG00000125447.17 protein_coding GGA3 1 OTTHUMG00000179483.7 +30846 chr17 HAVANA gene 75261674 75266373 3324.0 + 0 ENSG00000125445.10 protein_coding MRPS7 2 OTTHUMG00000179484.2 +30847 chr17 HAVANA gene 75266228 75271227 2283.0 - 0 ENSG00000125457.14 protein_coding MIF4GD 1 OTTHUMG00000179485.4 +30848 chr17 HAVANA gene 75271369 75273895 2527.0 + 0 ENSG00000263843.1 antisense AC022211.2 2 OTTHUMG00000179606.1 +30849 chr17 HAVANA gene 75272981 75289510 3316.0 - 0 ENSG00000125454.11 protein_coding SLC25A19 1 OTTHUMG00000179607.3 +30850 chr17 HAVANA gene 75338827 75339147 321.0 + 0 ENSG00000228007.1 processed_pseudogene AC011933.1 1 OTTHUMG00000132221.1 pseudo_consens +30851 chr17 HAVANA gene 75344405 75373662 403.0 + 0 ENSG00000265987.1 antisense AC011933.4 2 OTTHUMG00000179608.1 +30852 chr17 HAVANA gene 75370947 75373736 2790.0 - 0 ENSG00000264853.1 sense_intronic AC011933.2 2 OTTHUMG00000179609.1 overlapping_locus +30853 chr17 HAVANA gene 75394123 75394963 372.0 + 0 ENSG00000265342.1 antisense AC011933.3 2 OTTHUMG00000179610.1 +30854 chr17 HAVANA gene 75318076 75405709 4716.0 - 0 ENSG00000177885.14 protein_coding GRB2 1 OTTHUMG00000134332.5 overlapping_locus +30855 chr17 ENSEMBL gene 75406069 75406162 94.0 + 0 ENSG00000264511.1 miRNA MIR3678 3 +30856 chr17 ENSEMBL gene 75409086 75409188 103.0 - 0 ENSG00000223217.1 snRNA RNU6-938P 3 +30857 chr17 ENSEMBL gene 75431990 75432087 98.0 + 0 ENSG00000202332.1 misc_RNA RF00019 3 +30858 chr17 ENSEMBL gene 75498548 75498628 81.0 + 0 ENSG00000284595.1 miRNA MIR6785 3 +30859 chr17 HAVANA gene 75441159 75500090 8854.0 + 0 ENSG00000177728.16 protein_coding TMEM94 1 OTTHUMG00000179611.5 ncRNA_host +30860 chr17 HAVANA gene 75500261 75515583 5823.0 - 0 ENSG00000177303.9 protein_coding CASKIN2 2 OTTHUMG00000179683.3 +30861 chr17 HAVANA gene 75516060 75524739 3440.0 + 0 ENSG00000182173.12 protein_coding TSEN54 2 OTTHUMG00000179684.2 +30862 chr17 HAVANA gene 75525080 75575208 7909.0 + 0 ENSG00000073350.13 protein_coding LLGL2 2 OTTHUMG00000179685.3 +30863 chr17 HAVANA gene 75588058 75626501 12761.0 + 0 ENSG00000266714.8 protein_coding MYO15B 2 OTTHUMG00000179794.9 +30864 chr17 HAVANA gene 75633434 75641404 5117.0 + 0 ENSG00000204323.5 protein_coding SMIM5 2 OTTHUMG00000167882.3 +30865 chr17 HAVANA gene 75646243 75647977 1086.0 + 0 ENSG00000259120.2 protein_coding SMIM6 2 OTTHUMG00000179796.1 +30866 chr17 HAVANA gene 75626845 75667189 8766.0 - 0 ENSG00000108469.14 protein_coding RECQL5 1 OTTHUMG00000179795.2 +30867 chr17 HAVANA gene 75679474 75679967 352.0 - 0 ENSG00000264829.1 antisense AC087749.2 2 OTTHUMG00000179799.1 +30868 chr17 HAVANA gene 75683543 75684799 637.0 - 0 ENSG00000264270.1 antisense AC087749.1 2 OTTHUMG00000179800.1 +30869 chr17 HAVANA gene 75667116 75708062 8268.0 + 0 ENSG00000161526.14 protein_coding SAP30BP 2 OTTHUMG00000179798.2 +30870 chr17 HAVANA gene 75721328 75757818 6761.0 + 0 ENSG00000132470.13 protein_coding ITGB4 1 OTTHUMG00000179814.3 +30871 chr17 HAVANA gene 75751594 75765711 2891.0 - 0 ENSG00000108479.11 protein_coding GALK1 2 OTTHUMG00000179832.1 +30872 chr17 ENSEMBL gene 75784521 75784607 87.0 - 0 ENSG00000283853.1 miRNA MIR4738 3 +30873 chr17 HAVANA gene 75776434 75785893 6134.0 - 0 ENSG00000132475.10 protein_coding H3F3B 2 OTTHUMG00000179842.3 ncRNA_host +30874 chr17 HAVANA gene 75818815 75820055 890.0 - 0 ENSG00000266980.1 antisense AC087289.1 2 OTTHUMG00000179894.1 +30875 chr17 HAVANA gene 75784771 75825799 5575.0 + 0 ENSG00000132478.9 protein_coding UNK 1 OTTHUMG00000179892.3 +30876 chr17 HAVANA gene 75827225 75844717 7752.0 - 0 ENSG00000092929.11 protein_coding UNC13D 2 OTTHUMG00000179895.3 +30877 chr17 HAVANA gene 75845699 75856507 5399.0 - 0 ENSG00000132471.11 protein_coding WBP2 1 OTTHUMG00000179896.2 +30878 chr17 HAVANA gene 75874161 75878575 3142.0 - 0 ENSG00000132481.6 protein_coding TRIM47 2 OTTHUMG00000179916.3 +30879 chr17 HAVANA gene 75876372 75879546 3175.0 + 0 ENSG00000267801.1 antisense AC087289.5 2 OTTHUMG00000179917.1 +30880 chr17 HAVANA gene 75880335 75897003 3906.0 - 0 ENSG00000141569.11 protein_coding TRIM65 1 OTTHUMG00000132127.5 +30881 chr17 HAVANA gene 75897060 75900148 1419.0 + 0 ENSG00000267342.1 antisense AC087289.2 2 OTTHUMG00000179918.1 +30882 chr17 HAVANA gene 75898643 75905413 3663.0 - 0 ENSG00000204316.12 protein_coding MRPL38 2 OTTHUMG00000152977.2 overlapping_locus +30883 chr17 HAVANA gene 75898645 75930129 5062.0 - 0 ENSG00000267426.5 protein_coding AC087289.3 2 OTTHUMG00000180026.2 overlapping_locus +30884 chr17 HAVANA gene 75909574 75941140 6730.0 - 0 ENSG00000188878.19 protein_coding FBF1 2 OTTHUMG00000179919.7 overlapping_locus +30885 chr17 HAVANA gene 75943832 75945142 230.0 + 0 ENSG00000267615.1 antisense AC087289.4 2 OTTHUMG00000180028.1 +30886 chr17 HAVANA gene 75941507 75979363 8472.0 - 0 ENSG00000161533.11 protein_coding ACOX1 2 OTTHUMG00000180027.2 +30887 chr17 HAVANA gene 75979220 76000586 1303.0 + 0 ENSG00000257949.6 protein_coding TEN1 1 OTTHUMG00000132686.5 overlapping_locus +30888 chr17 HAVANA gene 76000906 76005999 1803.0 + 0 ENSG00000250506.7 protein_coding CDK3 2 OTTHUMG00000154861.3 overlapping_locus +30889 chr17 HAVANA gene 75979231 76005999 3898.0 + 0 ENSG00000261408.7 protein_coding TEN1-CDK3 2 OTTHUMG00000170136.4 overlapping_locus +30890 chr17 HAVANA gene 76004502 76027452 7510.0 - 0 ENSG00000167880.7 protein_coding EVPL 2 OTTHUMG00000180053.1 +30891 chr17 HAVANA gene 76038775 76072653 7641.0 - 0 ENSG00000167881.14 protein_coding SRP68 1 OTTHUMG00000180054.2 +30892 chr17 HAVANA gene 76074794 76077541 1364.0 + 0 ENSG00000182687.3 protein_coding GALR2 2 OTTHUMG00000167479.1 overlapping_locus +30893 chr17 HAVANA gene 76071961 76083666 4307.0 + 0 ENSG00000186919.12 protein_coding ZACN 2 OTTHUMG00000157186.4 overlapping_locus +30894 chr17 HAVANA gene 76090308 76091669 1362.0 + 0 ENSG00000279382.1 TEC AC018665.1 2 OTTHUMG00000180119.1 +30895 chr17 ENSEMBL gene 76098019 76098076 58.0 - 0 ENSG00000275360.1 miRNA MIR6868 3 +30896 chr17 HAVANA gene 76081017 76121576 10086.0 - 0 ENSG00000182473.21 protein_coding EXOC7 1 OTTHUMG00000150720.11 ncRNA_host +30897 chr17 HAVANA gene 76136333 76141299 2641.0 - 0 ENSG00000129654.7 protein_coding FOXJ1 2 OTTHUMG00000180120.1 +30898 chr17 HAVANA gene 76140556 76154650 2283.0 + 0 ENSG00000267128.1 antisense RNF157-AS1 2 OTTHUMG00000180136.1 +30899 chr17 HAVANA gene 76202644 76202796 153.0 - 0 ENSG00000267376.1 processed_pseudogene ATP5MGP6 1 OTTHUMG00000180123.1 pseudo_consens,overlapping_locus +30900 chr17 HAVANA gene 76225751 76226806 1056.0 - 0 ENSG00000228218.1 processed_pseudogene ATF4P3 2 OTTHUMG00000132653.1 overlapping_locus +30901 chr17 HAVANA gene 76142453 76240373 7802.0 - 0 ENSG00000141576.15 protein_coding RNF157 2 OTTHUMG00000132627.5 overlapping_locus +30902 chr17 HAVANA gene 76265202 76271299 1797.0 + 0 ENSG00000185262.8 protein_coding UBALD2 2 OTTHUMG00000132666.4 +30903 chr17 HAVANA gene 76274049 76307998 5775.0 - 0 ENSG00000129646.14 protein_coding QRICH2 2 OTTHUMG00000167578.5 +30904 chr17 ENSEMBL gene 76319376 76319473 98.0 + 0 ENSG00000251779.1 misc_RNA RF00019 3 +30905 chr17 ENSEMBL gene 76337316 76337422 107.0 + 0 ENSG00000207169.1 snRNA RNU6-24P 3 +30906 chr17 HAVANA gene 76345761 76346081 321.0 + 0 ENSG00000267518.1 processed_pseudogene AC090699.1 2 OTTHUMG00000180176.1 +30907 chr17 HAVANA gene 76309486 76384521 6939.0 - 0 ENSG00000161542.16 protein_coding PRPSAP1 2 OTTHUMG00000155969.4 +30908 chr17 HAVANA gene 76376584 76387860 4416.0 + 0 ENSG00000176170.13 protein_coding SPHK1 2 OTTHUMG00000180177.2 +30909 chr17 HAVANA gene 76430417 76431124 708.0 - 0 ENSG00000242931.1 processed_pseudogene RPL7P49 1 OTTHUMG00000157946.1 pseudo_consens,overlapping_locus +30910 chr17 HAVANA gene 76389451 76453206 6472.0 - 0 ENSG00000175931.12 protein_coding UBE2O 1 OTTHUMG00000180178.2 overlapping_locus +30911 chr17 HAVANA gene 76453351 76470117 2190.0 + 0 ENSG00000129673.9 protein_coding AANAT 2 OTTHUMG00000180179.2 +30912 chr17 HAVANA gene 76470891 76501790 6924.0 - 0 ENSG00000129667.12 protein_coding RHBDF2 1 OTTHUMG00000180180.3 +30913 chr17 HAVANA gene 76549951 76550826 570.0 + 0 ENSG00000267543.1 sense_intronic AC015802.3 2 OTTHUMG00000185721.1 overlapping_locus +30914 chr17 HAVANA gene 76527356 76551175 2949.0 - 0 ENSG00000161544.9 protein_coding CYGB 1 OTTHUMG00000180289.1 overlapping_locus +30915 chr17 HAVANA gene 76551352 76551750 399.0 + 0 ENSG00000272386.1 sense_intronic AC015802.5 2 OTTHUMG00000180291.2 overlapping_locus +30916 chr17 HAVANA gene 76527586 76553578 5305.0 + 0 ENSG00000214140.10 protein_coding PRCD 2 OTTHUMG00000132200.2 overlapping_locus +30917 chr17 HAVANA gene 76545668 76557683 1494.0 - 0 ENSG00000267546.2 antisense AC015802.4 2 OTTHUMG00000180290.2 overlapping_locus +30918 chr17 ENSEMBL gene 76558791 76558868 78.0 + 0 ENSG00000274091.1 snoRNA SNORD1C 3 +30919 chr17 ENSEMBL gene 76561109 76561192 84.0 + 0 ENSG00000199961.1 snoRNA SNORD1B 3 +30920 chr17 ENSEMBL gene 76561634 76561705 72.0 + 0 ENSG00000278261.1 snoRNA SNORD1A 3 +30921 chr17 HAVANA gene 76557766 76565348 5362.0 + 0 ENSG00000163597.14 processed_transcript SNHG16 1 OTTHUMG00000132201.2 ncRNA_host +30922 chr17 HAVANA gene 76563710 76570544 5654.0 - 0 ENSG00000284526.1 protein_coding AC015802.6 2 OTTHUMG00000180301.4 overlapping_locus +30923 chr17 HAVANA gene 76569792 76571240 1449.0 + 0 ENSG00000267078.1 antisense AC015802.1 2 OTTHUMG00000180302.1 +30924 chr17 HAVANA gene 76565379 76586956 3098.0 - 0 ENSG00000070731.10 protein_coding ST6GALNAC2 2 OTTHUMG00000191877.1 overlapping_locus +30925 chr17 HAVANA gene 76595584 76595772 189.0 - 0 ENSG00000267084.1 processed_pseudogene AC015802.2 1 OTTHUMG00000180368.1 pseudo_consens +30926 chr17 HAVANA gene 76624761 76643838 3448.0 - 0 ENSG00000070526.14 protein_coding ST6GALNAC1 2 OTTHUMG00000180369.2 +30927 chr17 ENSEMBL gene 76656320 76656422 103.0 + 0 ENSG00000199735.1 snRNA RNU6-227P 3 +30928 chr17 HAVANA gene 76671942 76673658 1717.0 + 0 ENSG00000261335.1 antisense AC005837.1 2 OTTHUMG00000176088.1 +30929 chr17 ENSEMBL gene 76703632 76703727 96.0 - 0 ENSG00000212418.1 misc_RNA RNY4P36 3 +30930 chr17 HAVANA gene 76709760 76710045 286.0 + 0 ENSG00000277382.1 antisense AC005837.3 2 OTTHUMG00000186700.1 +30931 chr17 HAVANA gene 76672551 76711016 9257.0 - 0 ENSG00000182534.13 protein_coding MXRA7 2 OTTHUMG00000180370.1 ncRNA_host +30932 chr17 ENSEMBL gene 76721216 76721396 181.0 - 0 ENSG00000274051.1 misc_RNA RF02271 3 +30933 chr17 HAVANA gene 76712832 76726799 5969.0 - 0 ENSG00000070495.14 protein_coding JMJD6 1 OTTHUMG00000169267.3 ncRNA_host +30934 chr17 HAVANA gene 76726830 76733936 1914.0 + 0 ENSG00000181038.13 protein_coding METTL23 2 OTTHUMG00000180371.3 overlapping_locus +30935 chr17 ENSEMBL gene 76736450 76736548 99.0 - 0 ENSG00000283805.1 miRNA MIR636 3 +30936 chr17 HAVANA gene 76734115 76737374 3017.0 - 0 ENSG00000161547.16 protein_coding SRSF2 2 OTTHUMG00000177547.5 ncRNA_host +30937 chr17 HAVANA gene 76732978 76738522 479.0 + 0 ENSG00000267168.1 protein_coding AC005837.2 2 OTTHUMG00000180483.1 overlapping_locus +30938 chr17 ENSEMBL gene 76752912 76753015 104.0 + 0 ENSG00000200257.1 snRNA RNU6-97P 3 +30939 chr17 HAVANA gene 76735865 76781449 6587.0 + 0 ENSG00000092931.11 protein_coding MFSD11 2 OTTHUMG00000180484.2 ncRNA_host,overlapping_locus +30940 chr17 HAVANA gene 76799044 76807102 3085.0 + 0 ENSG00000267065.2 lincRNA LINC02080 2 OTTHUMG00000177702.2 +30941 chr17 HAVANA gene 76850176 76861836 1047.0 + 0 ENSG00000267535.1 lincRNA LINC00868 2 OTTHUMG00000177703.1 +30942 chr17 HAVANA gene 76868456 76950393 6386.0 + 0 ENSG00000167889.12 protein_coding MGAT5B 2 OTTHUMG00000177278.4 +30943 chr17 HAVANA gene 76957023 76958222 722.0 - 0 ENSG00000267521.1 lincRNA AC016168.1 2 OTTHUMG00000182200.1 overlapping_locus +30944 chr17 HAVANA gene 76950317 76969156 969.0 - 0 ENSG00000267568.6 processed_transcript AC016168.2 1 OTTHUMG00000177279.4 overlapping_locus +30945 chr17 HAVANA gene 76966285 76969530 3246.0 - 0 ENSG00000280122.1 TEC AC016168.3 2 OTTHUMG00000177281.1 overlapping_locus +30946 chr17 ENSEMBL gene 77014880 77015138 259.0 + 0 ENSG00000276202.1 misc_RNA RF00017 3 +30947 chr17 ENSEMBL gene 77089307 77089493 187.0 + 0 ENSG00000275143.1 scaRNA SCARNA16 3 +30948 chr17 ENSEMBL gene 77089417 77089497 81.0 + 0 ENSG00000284250.1 miRNA MIR6516 3 +30949 chr17 HAVANA gene 77086716 77099902 6087.0 + 0 ENSG00000234912.12 sense_overlapping SNHG20 2 OTTHUMG00000132169.6 ncRNA_host,overlapping_locus +30950 chr17 ENSEMBL gene 77152561 77152674 114.0 - 0 ENSG00000222808.1 snRNA RNU4-47P 3 +30951 chr17 HAVANA gene 77198950 77199543 294.0 - 0 ENSG00000262870.1 processed_pseudogene CYCSP40 1 OTTHUMG00000177326.1 pseudo_consens +30952 chr17 HAVANA gene 77088749 77217101 10356.0 + 0 ENSG00000129657.15 protein_coding SEC14L1 1 OTTHUMG00000177311.13 ncRNA_host,overlapping_locus +30953 chr17 HAVANA gene 77264180 77264776 597.0 - 0 ENSG00000265121.1 lincRNA AC068594.2 2 OTTHUMG00000177705.1 overlapping_locus +30954 chr17 HAVANA gene 77257737 77281897 1348.0 - 0 ENSG00000263718.2 lincRNA AC068594.1 2 OTTHUMG00000177704.1 overlapping_locus +30955 chr17 HAVANA gene 77373818 77377236 3419.0 - 0 ENSG00000266998.1 antisense AC111182.1 2 OTTHUMG00000177710.1 +30956 chr17 ENSEMBL gene 77396984 77397054 71.0 - 0 ENSG00000264060.1 miRNA MIR4316 3 +30957 chr17 ENSEMBL gene 77442109 77442213 105.0 + 0 ENSG00000200651.1 misc_RNA RF00019 3 +30958 chr17 HAVANA gene 77444704 77447167 2464.0 + 0 ENSG00000279801.1 TEC AC111170.3 2 OTTHUMG00000177715.1 overlapping_locus +30959 chr17 HAVANA gene 77469068 77471045 768.0 + 0 ENSG00000267263.1 sense_intronic AC111170.2 2 OTTHUMG00000177716.1 overlapping_locus +30960 chr17 HAVANA gene 77469162 77472770 1132.0 - 0 ENSG00000267016.1 antisense AC111170.1 2 OTTHUMG00000177720.2 +30961 chr17 HAVANA gene 77280569 77500596 12844.0 + 0 ENSG00000184640.17 protein_coding SEPT9 1 OTTHUMG00000177327.17 ncRNA_host,overlapping_locus +30962 chr17 HAVANA gene 77526998 77536592 4613.0 + 0 ENSG00000267665.1 lincRNA AC021683.3 2 OTTHUMG00000177427.3 +30963 chr17 HAVANA gene 77546940 77563243 5079.0 + 0 ENSG00000267506.5 lincRNA AC021683.2 2 OTTHUMG00000176089.5 +30964 chr17 HAVANA gene 77563368 77568695 1767.0 - 0 ENSG00000267466.1 lincRNA AC021683.1 2 OTTHUMG00000177431.4 +30965 chr17 HAVANA gene 77571418 77572516 1099.0 + 0 ENSG00000279572.1 TEC AC021683.4 2 OTTHUMG00000177782.1 +30966 chr17 HAVANA gene 77590532 77680687 2722.0 + 0 ENSG00000285535.1 lincRNA AC021683.5 2 OTTHUMG00000192943.1 +30967 chr17 HAVANA gene 77722872 77728559 2281.0 - 0 ENSG00000267790.1 lincRNA LINC01987 2 OTTHUMG00000177432.1 +30968 chr17 HAVANA gene 77879027 77884087 4678.0 - 0 ENSG00000204283.3 lincRNA LINC01973 2 OTTHUMG00000177433.2 +30969 chr17 ENSEMBL gene 77920098 77920258 161.0 + 0 ENSG00000238898.1 snRNA RNU1-80P 3 +30970 chr17 HAVANA gene 78008421 78008855 435.0 + 0 ENSG00000279600.1 TEC AC015804.1 2 OTTHUMG00000177759.1 overlapping_locus +30971 chr17 HAVANA gene 78066258 78066761 504.0 - 0 ENSG00000267463.1 processed_pseudogene UBE2V2P2 1 OTTHUMG00000177677.1 pseudo_consens +30972 chr17 ENSEMBL gene 78066947 78067053 107.0 + 0 ENSG00000238658.1 snRNA RNU6-625P 3 +30973 chr17 HAVANA gene 77959240 78108835 11111.0 + 0 ENSG00000078687.17 protein_coding TNRC6C 2 OTTHUMG00000132642.11 ncRNA_host,overlapping_locus +30974 chr17 HAVANA gene 78107398 78111799 4402.0 - 0 ENSG00000204282.4 processed_transcript TNRC6C-AS1 2 OTTHUMG00000177654.1 overlapping_locus +30975 chr17 HAVANA gene 78110458 78132407 8669.0 - 0 ENSG00000141524.15 protein_coding TMC6 2 OTTHUMG00000177466.6 overlapping_locus +30976 chr17 HAVANA gene 78130770 78142968 5459.0 + 0 ENSG00000167895.14 protein_coding TMC8 1 OTTHUMG00000177436.7 +30977 chr17 HAVANA gene 78157403 78159135 1047.0 + 0 ENSG00000267679.1 processed_pseudogene EIF5AP2 1 OTTHUMG00000177447.1 pseudo_consens,overlapping_locus +30978 chr17 HAVANA gene 78146353 78166177 2763.0 + 0 ENSG00000187997.11 protein_coding C17orf99 2 OTTHUMG00000153871.6 overlapping_locus +30979 chr17 HAVANA gene 78168558 78173527 4074.0 + 0 ENSG00000108639.7 protein_coding SYNGR2 1 OTTHUMG00000177457.4 +30980 chr17 HAVANA gene 78174075 78187233 1861.0 - 0 ENSG00000167900.11 protein_coding TK1 2 OTTHUMG00000150674.5 +30981 chr17 HAVANA gene 78187317 78207701 4048.0 + 0 ENSG00000183077.15 protein_coding AFMID 1 OTTHUMG00000153957.4 +30982 chr17 HAVANA gene 78211618 78211908 291.0 - 0 ENSG00000267624.1 processed_pseudogene AC087645.1 2 OTTHUMG00000177655.1 +30983 chr17 HAVANA gene 78214186 78225636 3815.0 + 0 ENSG00000089685.14 protein_coding BIRC5 2 OTTHUMG00000177505.8 +30984 chr17 HAVANA gene 78231310 78240987 2602.0 + 0 ENSG00000204278.12 protein_coding TMEM235 2 OTTHUMG00000170345.1 +30985 chr17 HAVANA gene 78250346 78250932 587.0 - 0 ENSG00000279886.1 TEC AC087645.3 2 OTTHUMG00000177760.1 overlapping_locus +30986 chr17 HAVANA gene 78248193 78251440 792.0 + 0 ENSG00000283914.1 lincRNA AC087645.4 2 OTTHUMG00000191993.1 +30987 chr17 HAVANA gene 78248493 78254416 1145.0 - 0 ENSG00000267676.1 unitary_pseudogene THA1P 2 OTTHUMG00000132125.1 overlapping_locus +30988 chr17 HAVANA gene 78261349 78278492 2934.0 - 0 ENSG00000204277.1 lincRNA LINC01993 2 OTTHUMG00000177511.1 +30989 chr17 HAVANA gene 78315729 78347798 1145.0 + 0 ENSG00000267737.1 lincRNA AC087645.2 2 OTTHUMG00000132645.2 +30990 chr17 HAVANA gene 78356778 78360077 2734.0 - 0 ENSG00000184557.4 protein_coding SOCS3 2 OTTHUMG00000177513.5 +30991 chr17 ENSEMBL gene 78370852 78371135 284.0 - 0 ENSG00000243870.3 misc_RNA RN7SL236P 3 +30992 chr17 HAVANA gene 78360453 78373911 1188.0 + 0 ENSG00000266970.1 lincRNA AC061992.1 2 OTTHUMG00000177663.1 +30993 chr17 ENSEMBL gene 78399935 78400063 129.0 + 0 ENSG00000200063.1 snoRNA RF00415 3 +30994 chr17 HAVANA gene 78378640 78425114 4965.0 + 0 ENSG00000087157.18 protein_coding PGS1 1 OTTHUMG00000177514.7 ncRNA_host +30995 chr17 HAVANA gene 78484882 78503056 5498.0 + 0 ENSG00000267432.5 processed_transcript DNAH17-AS1 1 OTTHUMG00000177638.3 overlapping_locus +30996 chr17 HAVANA gene 78522247 78522828 582.0 + 0 ENSG00000267770.1 processed_pseudogene AC016182.1 1 OTTHUMG00000177746.1 pseudo_consens +30997 chr17 ENSEMBL gene 78532813 78533055 243.0 - 0 ENSG00000243426.3 misc_RNA RN7SL454P 3 +30998 chr17 HAVANA gene 78423697 78577394 16108.0 - 0 ENSG00000187775.16 protein_coding DNAH17 1 OTTHUMG00000150216.7 ncRNA_host +30999 chr17 HAVANA gene 78605233 78632155 4576.0 - 0 ENSG00000267123.6 lincRNA LINC02081 2 OTTHUMG00000177747.3 +31000 chr17 HAVANA gene 78691266 78691979 714.0 - 0 ENSG00000279570.1 TEC AC099804.1 2 OTTHUMG00000177595.1 overlapping_locus +31001 chr17 ENSEMBL gene 78696694 78696797 104.0 - 0 ENSG00000252391.1 snRNA RNU6-638P 3 +31002 chr17 HAVANA gene 78674048 78782297 7754.0 - 0 ENSG00000108669.16 protein_coding CYTH1 1 OTTHUMG00000150253.6 ncRNA_host,overlapping_locus +31003 chr17 HAVANA gene 78787381 78841441 9235.0 - 0 ENSG00000055483.19 protein_coding USP36 1 OTTHUMG00000177542.10 +31004 chr17 HAVANA gene 78845953 78846868 593.0 - 0 ENSG00000267355.2 processed_pseudogene RPL9P29 1 OTTHUMG00000157951.3 pseudo_consens +31005 chr17 HAVANA gene 78855478 78855844 367.0 + 0 ENSG00000267601.1 antisense AC022966.1 2 OTTHUMG00000177627.1 +31006 chr17 HAVANA gene 78897264 78900152 2889.0 + 0 ENSG00000279339.1 TEC AC100788.2 2 OTTHUMG00000177583.1 +31007 chr17 HAVANA gene 78870910 78903217 2758.0 - 0 ENSG00000178404.9 protein_coding CEP295NL 1 OTTHUMG00000177628.3 overlapping_locus +31008 chr17 HAVANA gene 78903263 78905024 945.0 + 0 ENSG00000267491.1 antisense AC100788.1 2 OTTHUMG00000177630.1 +31009 chr17 HAVANA gene 78852977 78925387 5633.0 - 0 ENSG00000035862.12 protein_coding TIMP2 2 OTTHUMG00000154517.4 overlapping_locus +31010 chr17 HAVANA gene 78971238 78980109 3584.0 - 0 ENSG00000108679.12 protein_coding LGALS3BP 1 OTTHUMG00000177572.7 +31011 chr17 HAVANA gene 78991717 79009867 4421.0 - 0 ENSG00000171302.16 protein_coding CANT1 2 OTTHUMG00000177570.8 +31012 chr17 HAVANA gene 79019209 79027655 966.0 - 0 ENSG00000265096.1 antisense C1QTNF1-AS1 1 OTTHUMG00000132159.2 +31013 chr17 HAVANA gene 79022814 79049788 4854.0 + 0 ENSG00000173918.14 protein_coding C1QTNF1 1 OTTHUMG00000177533.6 +31014 chr17 HAVANA gene 79074939 79088599 6173.0 + 0 ENSG00000167280.16 protein_coding ENGASE 2 OTTHUMG00000167714.3 +31015 chr17 HAVANA gene 79132722 79136402 547.0 + 0 ENSG00000266711.1 antisense AC021534.1 2 OTTHUMG00000177567.1 +31016 chr17 HAVANA gene 79089345 79516148 9873.0 - 0 ENSG00000167281.19 protein_coding RBFOX3 1 OTTHUMG00000150183.10 +31017 chr17 HAVANA gene 79598032 79603921 4204.0 - 0 ENSG00000263278.2 sense_intronic AC233701.1 2 OTTHUMG00000182019.1 +31018 chr17 ENSEMBL gene 79707176 79707249 74.0 - 0 ENSG00000266665.1 miRNA MIR4739 3 +31019 chr17 HAVANA gene 79707266 79712317 4237.0 + 0 ENSG00000267719.1 lincRNA LINC02078 2 OTTHUMG00000177461.2 +31020 chr17 HAVANA gene 79730919 79742222 3549.0 + 0 ENSG00000182156.9 protein_coding ENPP7 2 OTTHUMG00000177462.2 +31021 chr17 HAVANA gene 79778132 79787983 5687.0 + 0 ENSG00000173894.10 protein_coding CBX2 2 OTTHUMG00000177463.1 +31022 chr17 HAVANA gene 79792132 79801683 4164.0 - 0 ENSG00000141570.10 protein_coding CBX8 2 OTTHUMG00000150416.3 +31023 chr17 HAVANA gene 79800598 79802529 607.0 + 0 ENSG00000262768.2 antisense AC100791.2 2 OTTHUMG00000177464.2 +31024 chr17 HAVANA gene 79823452 79827704 1788.0 + 0 ENSG00000262772.1 lincRNA LINC01977 2 OTTHUMG00000177465.1 +31025 chr17 HAVANA gene 79833156 79839429 2880.0 - 0 ENSG00000141582.14 protein_coding CBX4 2 OTTHUMG00000150415.2 +31026 chr17 HAVANA gene 79848058 79850110 324.0 - 0 ENSG00000262343.1 lincRNA AC100791.1 2 OTTHUMG00000177486.1 +31027 chr17 HAVANA gene 79919357 79925462 1877.0 + 0 ENSG00000262188.1 lincRNA LINC01978 2 OTTHUMG00000177488.1 +31028 chr17 HAVANA gene 79915252 79926725 5271.0 - 0 ENSG00000262585.1 lincRNA LINC01979 2 OTTHUMG00000177487.1 +31029 chr17 HAVANA gene 79952663 79952992 330.0 + 0 ENSG00000275516.1 antisense AC100791.3 2 OTTHUMG00000186713.1 +31030 chr17 HAVANA gene 79991944 79992841 443.0 - 0 ENSG00000262172.1 sense_intronic AC116025.2 2 OTTHUMG00000177535.1 overlapping_locus +31031 chr17 HAVANA gene 80023894 80026107 418.0 + 0 ENSG00000261978.1 antisense AC116025.1 2 OTTHUMG00000177536.1 +31032 chr17 HAVANA gene 79932343 80035848 11555.0 - 0 ENSG00000167291.15 protein_coding TBC1D16 1 OTTHUMG00000177489.4 overlapping_locus +31033 chr17 ENSEMBL gene 80098828 80098877 50.0 + 0 ENSG00000265561.2 miRNA MIR1268B 3 +31034 chr17 HAVANA gene 80036632 80100613 9961.0 + 0 ENSG00000141519.14 protein_coding CCDC40 2 OTTHUMG00000132707.4 ncRNA_host +31035 chr17 HAVANA gene 80101556 80119879 5156.0 + 0 ENSG00000171298.12 protein_coding GAA 2 OTTHUMG00000177537.2 +31036 chr17 HAVANA gene 80135214 80147183 4967.0 - 0 ENSG00000141543.10 protein_coding EIF4A3 2 OTTHUMG00000177538.4 +31037 chr17 HAVANA gene 80147250 80148596 1347.0 + 0 ENSG00000279259.1 TEC AC087741.3 2 OTTHUMG00000177539.2 +31038 chr17 HAVANA gene 80149627 80149798 172.0 + 0 ENSG00000275479.1 lincRNA AC087741.2 2 OTTHUMG00000186714.1 +31039 chr17 HAVANA gene 80200673 80205949 5122.0 - 0 ENSG00000262580.5 antisense AC087741.1 2 OTTHUMG00000177568.3 +31040 chr17 HAVANA gene 80169992 80209331 8208.0 + 0 ENSG00000141527.17 protein_coding CARD14 2 OTTHUMG00000177549.7 +31041 chr17 HAVANA gene 80206716 80220923 6713.0 - 0 ENSG00000181523.12 protein_coding SGSH 2 OTTHUMG00000177569.3 +31042 chr17 HAVANA gene 80219699 80253500 4903.0 + 0 ENSG00000181045.14 protein_coding SLC26A11 1 OTTHUMG00000133419.5 +31043 chr17 HAVANA gene 80315651 80316633 653.0 + 0 ENSG00000262979.1 sense_intronic AC124319.1 2 OTTHUMG00000177579.1 overlapping_locus +31044 chr17 HAVANA gene 80333841 80334366 526.0 - 0 ENSG00000276863.1 antisense AC124319.3 2 OTTHUMG00000186715.1 +31045 chr17 HAVANA gene 80339898 80342058 2161.0 + 0 ENSG00000280248.1 TEC AC124319.4 2 OTTHUMG00000177591.1 overlapping_locus +31046 chr17 HAVANA gene 80260866 80398786 28570.0 + 0 ENSG00000173821.19 protein_coding RNF213 1 OTTHUMG00000161415.8 overlapping_locus +31047 chr17 HAVANA gene 80351828 80415168 3983.0 - 0 ENSG00000263069.5 antisense AC124319.2 2 OTTHUMG00000177592.1 +31048 chr17 ENSEMBL gene 80419418 80419493 76.0 + 0 ENSG00000264961.1 miRNA MIR4730 3 +31049 chr17 HAVANA gene 80415165 80438086 7253.0 + 0 ENSG00000173818.16 protein_coding ENDOV 1 OTTHUMG00000164638.10 ncRNA_host +31050 chr17 HAVANA gene 80453735 80454729 995.0 - 0 ENSG00000260369.2 lincRNA AC120024.1 2 OTTHUMG00000176094.2 +31051 chr17 HAVANA gene 80463451 80465593 2143.0 - 0 ENSG00000279273.1 TEC AC120024.4 2 OTTHUMG00000177606.1 +31052 chr17 HAVANA gene 80467148 80477843 6703.0 - 0 ENSG00000171246.5 protein_coding NPTX1 2 OTTHUMG00000177607.1 +31053 chr17 HAVANA gene 80515215 80515389 175.0 + 0 ENSG00000262000.1 processed_pseudogene AC120024.2 2 OTTHUMG00000177621.1 +31054 chr17 HAVANA gene 80515657 80515812 156.0 + 0 ENSG00000271340.1 processed_pseudogene AC120024.3 1 OTTHUMG00000184847.1 pseudo_consens +31055 chr17 HAVANA gene 80542203 80542605 403.0 + 0 ENSG00000213128.3 processed_pseudogene RPL32P31 1 OTTHUMG00000157959.1 pseudo_consens +31056 chr17 HAVANA gene 80602549 80602926 378.0 - 0 ENSG00000232083.3 processed_pseudogene RPL31P7 1 OTTHUMG00000132151.1 pseudo_consens +31057 chr17 HAVANA gene 80801640 80805632 3204.0 - 0 ENSG00000262833.1 antisense AC016245.1 2 OTTHUMG00000177623.1 +31058 chr17 HAVANA gene 80940418 80942033 494.0 - 0 ENSG00000262313.1 antisense AC127496.3 2 OTTHUMG00000177643.1 +31059 chr17 HAVANA gene 80960766 80961713 549.0 - 0 ENSG00000262662.1 antisense AC127496.4 2 OTTHUMG00000177624.1 +31060 chr17 HAVANA gene 80544819 80966371 9389.0 + 0 ENSG00000141564.14 protein_coding RPTOR 1 OTTHUMG00000177622.3 +31061 chr17 HAVANA gene 80966239 80971213 4207.0 - 0 ENSG00000261924.1 antisense AC127496.1 2 OTTHUMG00000177644.1 +31062 chr17 HAVANA gene 80976454 80976948 495.0 + 0 ENSG00000240270.1 processed_pseudogene RPL12P37 1 OTTHUMG00000157963.1 pseudo_consens +31063 chr17 HAVANA gene 80999509 81000130 455.0 - 0 ENSG00000263218.2 antisense AC127496.6 2 OTTHUMG00000177658.2 +31064 chr17 HAVANA gene 81003335 81005132 1798.0 + 0 ENSG00000280351.2 TEC AC127496.7 2 OTTHUMG00000177659.1 overlapping_locus +31065 chr17 HAVANA gene 80991598 81009517 2118.0 + 0 ENSG00000176108.9 protein_coding CHMP6 2 OTTHUMG00000177645.3 overlapping_locus +31066 chr17 HAVANA gene 81017969 81020011 935.0 - 0 ENSG00000262873.1 lincRNA AC127496.5 2 OTTHUMG00000177695.1 +31067 chr17 HAVANA gene 81023545 81025503 368.0 - 0 ENSG00000262098.1 lincRNA AC127496.2 2 OTTHUMG00000177696.1 +31068 chr17 HAVANA gene 81029130 81034881 4773.0 - 0 ENSG00000226137.5 lincRNA BAIAP2-DT 2 OTTHUMG00000177697.3 +31069 chr17 HAVANA gene 81035122 81117432 10288.0 + 0 ENSG00000175866.15 protein_coding BAIAP2 1 OTTHUMG00000177698.4 +31070 chr17 ENSEMBL gene 81125276 81125373 98.0 - 0 ENSG00000207736.1 miRNA MIR657 3 +31071 chr17 ENSEMBL gene 81125883 81125949 67.0 - 0 ENSG00000283604.1 miRNA MIR338 3 +31072 chr17 ENSEMBL gene 81125877 81125955 79.0 + 0 ENSG00000211563.4 miRNA MIR3065 3 +31073 chr17 ENSEMBL gene 81133196 81133308 113.0 - 0 ENSG00000221025.1 miRNA MIR1250 3 +31074 chr17 HAVANA gene 81135771 81136256 362.0 + 0 ENSG00000263167.1 antisense AC115099.1 2 OTTHUMG00000177817.1 +31075 chr17 HAVANA gene 81117295 81166077 6225.0 - 0 ENSG00000181409.12 protein_coding AATK 1 OTTHUMG00000132717.5 ncRNA_host +31076 chr17 HAVANA gene 81165507 81183164 1803.0 + 0 ENSG00000225180.7 protein_coding PVALEF 2 OTTHUMG00000150182.3 +31077 chr17 HAVANA gene 81197393 81200288 805.0 + 0 ENSG00000262115.1 antisense AC027601.2 2 OTTHUMG00000177843.1 +31078 chr17 HAVANA gene 81189593 81222999 3966.0 - 0 ENSG00000141577.13 protein_coding CEP131 2 OTTHUMG00000132728.4 +31079 chr17 HAVANA gene 81228707 81233983 4506.0 + 0 ENSG00000260005.6 antisense AC027601.1 2 OTTHUMG00000132137.2 +31080 chr17 HAVANA gene 81228277 81239091 4762.0 - 0 ENSG00000167302.10 protein_coding TEPSIN 2 OTTHUMG00000177866.4 +31081 chr17 HAVANA gene 81239239 81241281 1376.0 + 0 ENSG00000224877.3 protein_coding NDUFAF8 1 OTTHUMG00000177867.4 +31082 chr17 HAVANA gene 81251194 81251803 610.0 + 0 ENSG00000276101.1 antisense AC027601.4 2 OTTHUMG00000186719.1 +31083 chr17 HAVANA gene 81262920 81265401 2482.0 + 0 ENSG00000279187.1 TEC AC027601.5 2 OTTHUMG00000177903.1 +31084 chr17 HAVANA gene 81245000 81295547 7716.0 - 0 ENSG00000157637.12 protein_coding SLC38A10 1 OTTHUMG00000168049.3 +31085 chr17 HAVANA gene 81303771 81309248 2197.0 - 0 ENSG00000185168.5 lincRNA LINC00482 2 OTTHUMG00000177904.1 +31086 chr17 HAVANA gene 81311270 81330674 3794.0 - 0 ENSG00000185332.7 protein_coding TMEM105 2 OTTHUMG00000177905.3 +31087 chr17 HAVANA gene 81339183 81339691 509.0 - 0 ENSG00000275542.1 lincRNA AC027601.3 2 OTTHUMG00000186720.1 +31088 chr17 HAVANA gene 81345476 81345966 491.0 - 0 ENSG00000275966.1 lincRNA AC110285.6 2 OTTHUMG00000186721.1 +31089 chr17 HAVANA gene 81362272 81374214 665.0 + 0 ENSG00000263154.1 lincRNA AC110285.3 1 OTTHUMG00000177949.1 +31090 chr17 HAVANA gene 81375144 81385464 2039.0 - 0 ENSG00000262223.7 lincRNA AC110285.1 2 OTTHUMG00000177950.2 +31091 chr17 HAVANA gene 81387415 81387766 352.0 + 0 ENSG00000274833.1 lincRNA AC110285.5 2 OTTHUMG00000186759.1 +31092 chr17 HAVANA gene 81388126 81390256 1565.0 - 0 ENSG00000262877.4 lincRNA AC110285.2 2 OTTHUMG00000177951.4 +31093 chr17 HAVANA gene 81395609 81397144 1536.0 - 0 ENSG00000279692.1 TEC AC110285.7 2 OTTHUMG00000176097.1 +31094 chr17 ENSEMBL gene 81400716 81400778 63.0 - 0 ENSG00000266392.1 miRNA MIR4740 3 +31095 chr17 ENSEMBL gene 81451104 81451188 85.0 - 0 ENSG00000266189.1 miRNA MIR3186 3 +31096 chr17 HAVANA gene 81461013 81461937 424.0 - 0 ENSG00000263271.1 antisense AC110285.4 2 OTTHUMG00000177954.1 +31097 chr17 HAVANA gene 81395475 81466332 13473.0 + 0 ENSG00000266074.8 protein_coding BAHCC1 2 OTTHUMG00000184171.3 +31098 chr17 HAVANA gene 81480523 81481570 1048.0 - 0 ENSG00000278200.1 lincRNA LINC01971 2 OTTHUMG00000186760.1 +31099 chr17 HAVANA gene 81509971 81523847 2993.0 - 0 ENSG00000184009.11 protein_coding ACTG1 2 OTTHUMG00000177955.9 +31100 chr17 HAVANA gene 81514047 81527776 957.0 + 0 ENSG00000229848.1 antisense AC139149.1 2 OTTHUMG00000156171.1 +31101 chr17 HAVANA gene 81528396 81537130 2019.0 + 0 ENSG00000186765.11 protein_coding FSCN2 2 OTTHUMG00000167477.2 +31102 chr17 HAVANA gene 81539885 81553961 5354.0 - 0 ENSG00000185504.16 protein_coding FAAP100 1 OTTHUMG00000167764.3 +31103 chr17 ENSEMBL gene 81573490 81573602 113.0 + 0 ENSG00000207021.1 misc_RNA RF00019 3 +31104 chr17 HAVANA gene 81556887 81648465 9574.0 - 0 ENSG00000182446.13 protein_coding NPLOC4 1 OTTHUMG00000177990.4 +31105 chr17 HAVANA gene 81637171 81648749 4745.0 + 0 ENSG00000182612.10 protein_coding TSPAN10 2 OTTHUMG00000178037.4 +31106 chr17 HAVANA gene 81650459 81663112 1583.0 - 0 ENSG00000185527.11 protein_coding PDE6G 1 OTTHUMG00000178038.2 +31107 chr17 HAVANA gene 81665036 81666635 1600.0 - 0 ENSG00000204237.4 protein_coding OXLD1 1 OTTHUMG00000178063.2 +31108 chr17 HAVANA gene 81666364 81673904 2762.0 + 0 ENSG00000185298.12 protein_coding CCDC137 2 OTTHUMG00000178064.2 +31109 chr17 HAVANA gene 81681174 81683924 2597.0 - 0 ENSG00000214087.8 protein_coding ARL16 1 OTTHUMG00000178103.4 +31110 chr17 ENSEMBL gene 81693757 81693869 113.0 + 0 ENSG00000277784.1 miRNA MIR6786 3 +31111 chr17 HAVANA gene 81697025 81697714 690.0 - 0 ENSG00000275902.1 antisense AC139530.3 2 OTTHUMG00000186761.1 +31112 chr17 HAVANA gene 81683326 81703138 8254.0 + 0 ENSG00000185359.12 protein_coding HGS 1 OTTHUMG00000178109.4 ncRNA_host +31113 chr17 HAVANA gene 81701324 81703300 1977.0 - 0 ENSG00000262049.1 antisense AC139530.1 2 OTTHUMG00000178170.1 +31114 chr17 HAVANA gene 81703357 81707526 1028.0 + 0 ENSG00000262814.7 protein_coding MRPL12 2 OTTHUMG00000178171.1 overlapping_locus +31115 chr17 HAVANA gene 81703371 81720539 1922.0 + 0 ENSG00000262660.1 protein_coding AC139530.2 2 OTTHUMG00000178172.1 overlapping_locus +31116 chr17 HAVANA gene 81712236 81721016 2621.0 + 0 ENSG00000183048.11 protein_coding SLC25A10 2 OTTHUMG00000178173.1 overlapping_locus +31117 chr17 HAVANA gene 81804132 81814013 3241.0 + 0 ENSG00000215644.9 protein_coding GCGR 2 OTTHUMG00000177914.2 +31118 chr17 HAVANA gene 81822361 81833302 3726.0 - 0 ENSG00000225663.7 protein_coding MCRIP1 1 OTTHUMG00000177915.1 +31119 chr17 HAVANA gene 81833492 81835050 1449.0 - 0 ENSG00000182676.4 protein_coding PPP1R27 2 OTTHUMG00000177916.1 +31120 chr17 HAVANA gene 81843165 81843958 529.0 + 0 ENSG00000262831.1 antisense AC145207.3 2 OTTHUMG00000177880.1 +31121 chr17 HAVANA gene 81843159 81860694 5303.0 - 0 ENSG00000185624.14 protein_coding P4HB 1 OTTHUMG00000150269.7 +31122 chr17 HAVANA gene 81862778 81863102 325.0 + 0 ENSG00000278876.1 TEC AC145207.9 2 OTTHUMG00000177917.1 +31123 chr17 HAVANA gene 81867721 81868552 762.0 + 0 ENSG00000262413.1 antisense AC145207.2 2 OTTHUMG00000177881.1 +31124 chr17 HAVANA gene 81867721 81871406 2903.0 - 0 ENSG00000141522.11 protein_coding ARHGDIA 2 OTTHUMG00000178352.3 +31125 chr17 HAVANA gene 81878667 81879557 782.0 + 0 ENSG00000263859.1 lincRNA AC145207.6 2 OTTHUMG00000178530.1 +31126 chr17 HAVANA gene 81878425 81881106 2682.0 - 0 ENSG00000263731.1 lincRNA AC145207.5 2 OTTHUMG00000178529.1 +31127 chr17 HAVANA gene 81887844 81891586 1574.0 - 0 ENSG00000183684.7 protein_coding ALYREF 2 OTTHUMG00000160470.2 +31128 chr17 HAVANA gene 81890790 81900991 4027.0 + 0 ENSG00000141552.17 protein_coding ANAPC11 2 OTTHUMG00000177982.5 overlapping_locus +31129 chr17 HAVANA gene 81900745 81902905 2161.0 + 0 ENSG00000183979.7 protein_coding NPB 2 OTTHUMG00000177983.2 overlapping_locus +31130 chr17 HAVANA gene 81900965 81911464 6897.0 - 0 ENSG00000185813.10 protein_coding PCYT2 1 OTTHUMG00000177956.4 +31131 chr17 HAVANA gene 81911939 81921323 6152.0 - 0 ENSG00000187531.13 protein_coding SIRT7 2 OTTHUMG00000177957.2 overlapping_locus +31132 chr17 HAVANA gene 81922899 81924511 563.0 + 0 ENSG00000264769.1 antisense AC145207.8 2 OTTHUMG00000178434.1 +31133 chr17 HAVANA gene 81918270 81927714 5220.0 - 0 ENSG00000197063.10 protein_coding MAFG 2 OTTHUMG00000177958.2 overlapping_locus +31134 chr17 HAVANA gene 81927829 81930753 1895.0 + 0 ENSG00000265688.1 antisense MAFG-DT 2 OTTHUMG00000178435.1 +31135 chr17 HAVANA gene 81932398 81933058 450.0 + 0 ENSG00000263585.1 antisense AC145207.4 2 OTTHUMG00000178437.1 +31136 chr17 HAVANA gene 81932384 81942412 2886.0 - 0 ENSG00000183010.16 protein_coding PYCR1 1 OTTHUMG00000178436.2 overlapping_locus +31137 chr17 HAVANA gene 81939645 81947233 2452.0 - 0 ENSG00000185105.5 protein_coding MYADML2 2 OTTHUMG00000154388.2 overlapping_locus +31138 chr17 HAVANA gene 81941869 81947601 691.0 + 0 ENSG00000235296.1 antisense AC145207.1 2 OTTHUMG00000154387.1 +31139 chr17 HAVANA gene 81952507 81961840 3019.0 - 0 ENSG00000185269.11 protein_coding NOTUM 2 OTTHUMG00000154416.7 +31140 chr17 HAVANA gene 81965632 81966589 958.0 - 0 ENSG00000264735.1 lincRNA AC145207.7 2 OTTHUMG00000178531.1 +31141 chr17 HAVANA gene 81976807 82017406 12097.0 + 0 ENSG00000169696.15 protein_coding ASPSCR1 2 OTTHUMG00000178438.5 +31142 chr17 HAVANA gene 82018702 82024107 1531.0 - 0 ENSG00000169689.14 protein_coding CENPX 2 OTTHUMG00000132129.2 +31143 chr17 HAVANA gene 82023302 82031151 3606.0 + 0 ENSG00000169683.7 protein_coding LRRC45 2 OTTHUMG00000178454.3 +31144 chr17 HAVANA gene 82031624 82034204 1527.0 + 0 ENSG00000169750.8 protein_coding RAC3 2 OTTHUMG00000178455.2 +31145 chr17 HAVANA gene 82035403 82035800 398.0 - 0 ENSG00000279372.1 TEC AC137723.2 2 OTTHUMG00000178500.1 overlapping_locus +31146 chr17 HAVANA gene 82035136 82037732 1902.0 - 0 ENSG00000169738.7 protein_coding DCXR 2 OTTHUMG00000178483.4 overlapping_locus +31147 chr17 HAVANA gene 82037905 82039380 709.0 + 0 ENSG00000264569.1 antisense AC137723.1 2 OTTHUMG00000178439.1 +31148 chr17 HAVANA gene 82047902 82051831 3865.0 - 0 ENSG00000169733.11 protein_coding RFNG 1 OTTHUMG00000178512.2 +31149 chr17 HAVANA gene 82050691 82057470 6155.0 + 0 ENSG00000169727.12 protein_coding GPS1 1 OTTHUMG00000178484.3 +31150 chr17 HAVANA gene 82057506 82065887 5999.0 - 0 ENSG00000169718.17 protein_coding DUS1L 1 OTTHUMG00000178525.3 +31151 chr17 HAVANA gene 82078333 82098332 9364.0 - 0 ENSG00000169710.8 protein_coding FASN 2 OTTHUMG00000178527.5 +31152 chr17 HAVANA gene 82153430 82154815 555.0 + 0 ENSG00000265678.1 antisense AC129510.1 2 OTTHUMG00000178560.1 +31153 chr17 HAVANA gene 82160056 82160452 345.0 + 0 ENSG00000266654.1 antisense AC129510.2 2 OTTHUMG00000178561.1 +31154 chr17 HAVANA gene 82101460 82212830 12397.0 - 0 ENSG00000176155.18 protein_coding CCDC57 1 OTTHUMG00000140396.8 +31155 chr17 HAVANA gene 82214227 82217352 2368.0 + 0 ENSG00000264548.1 antisense AC132872.2 2 OTTHUMG00000178600.1 +31156 chr17 ENSEMBL gene 82236668 82236728 61.0 + 0 ENSG00000284574.1 miRNA MIR6787 3 +31157 chr17 HAVANA gene 82244770 82245591 629.0 + 0 ENSG00000275888.1 antisense AC132872.3 2 OTTHUMG00000188129.1 overlapping_locus +31158 chr17 HAVANA gene 82249067 82251844 2778.0 + 0 ENSG00000280407.2 TEC AC132872.4 2 OTTHUMG00000178833.1 overlapping_locus +31159 chr17 HAVANA gene 82228397 82261129 8995.0 + 0 ENSG00000141526.16 protein_coding SLC16A3 1 OTTHUMG00000178832.2 ncRNA_host,overlapping_locus +31160 chr17 HAVANA gene 82239023 82273731 11024.0 - 0 ENSG00000141551.14 protein_coding CSNK1D 1 OTTHUMG00000178601.2 +31161 chr17 HAVANA gene 82290046 82292814 1810.0 - 0 ENSG00000265692.1 lincRNA LINC01970 2 OTTHUMG00000178661.1 +31162 chr17 HAVANA gene 82293716 82294910 1195.0 + 0 ENSG00000260563.3 lincRNA AC132872.1 2 OTTHUMG00000176101.1 +31163 chr17 HAVANA gene 82314868 82317602 2735.0 - 0 ENSG00000173762.7 protein_coding CD7 1 OTTHUMG00000178662.2 +31164 chr17 HAVANA gene 82321024 82334074 2961.0 - 0 ENSG00000141574.7 protein_coding SECTM1 2 OTTHUMG00000178668.2 +31165 chr17 HAVANA gene 82362349 82363196 848.0 - 0 ENSG00000278964.1 TEC AC132938.4 2 OTTHUMG00000178669.1 +31166 chr17 HAVANA gene 82359247 82363776 1936.0 + 0 ENSG00000182459.4 protein_coding TEX19 2 OTTHUMG00000132857.1 +31167 chr17 HAVANA gene 82374230 82375586 1357.0 + 0 ENSG00000181408.3 protein_coding UTS2R 2 OTTHUMG00000178835.1 +31168 chr17 HAVANA gene 82381110 82382690 360.0 - 0 ENSG00000260011.2 lincRNA AC132938.1 2 OTTHUMG00000176103.2 +31169 chr17 HAVANA gene 82400703 82401382 680.0 - 0 ENSG00000264812.1 sense_intronic AC132938.2 2 OTTHUMG00000178680.2 overlapping_locus +31170 chr17 ENSEMBL gene 82417226 82417321 96.0 + 0 ENSG00000201239.1 misc_RNA RF00019 3 +31171 chr17 HAVANA gene 82389223 82418637 6391.0 - 0 ENSG00000181396.12 protein_coding OGFOD3 1 OTTHUMG00000178679.4 overlapping_locus +31172 chr17 HAVANA gene 82425498 82427310 1813.0 + 0 ENSG00000279066.1 sense_intronic HEXDC-IT1 2 OTTHUMG00000178837.1 overlapping_locus +31173 chr17 HAVANA gene 82418318 82442645 4153.0 + 0 ENSG00000169660.16 protein_coding HEXDC 2 OTTHUMG00000178836.4 overlapping_locus +31174 chr17 HAVANA gene 82442589 82450829 7234.0 - 0 ENSG00000178927.17 protein_coding CYBC1 1 OTTHUMG00000178770.5 +31175 chr17 HAVANA gene 82454273 82458521 456.0 - 0 ENSG00000265458.1 antisense AC132938.3 2 OTTHUMG00000178838.1 +31176 chr17 HAVANA gene 82462601 82464255 1655.0 + 0 ENSG00000279744.1 TEC AC132938.5 2 OTTHUMG00000178845.1 overlapping_locus +31177 chr17 HAVANA gene 82476597 82477924 838.0 - 0 ENSG00000266445.1 antisense NARF-AS1 2 OTTHUMG00000178839.1 +31178 chr17 HAVANA gene 82482098 82483388 769.0 + 0 ENSG00000266236.1 sense_intronic NARF-IT1 2 OTTHUMG00000178846.1 overlapping_locus +31179 chr17 HAVANA gene 82458180 82490537 7962.0 + 0 ENSG00000141562.17 protein_coding NARF 1 OTTHUMG00000178844.4 overlapping_locus +31180 chr17 HAVANA gene 82576616 82577391 456.0 - 0 ENSG00000265136.1 processed_pseudogene AC124283.4 1 OTTHUMG00000178840.1 pseudo_consens +31181 chr17 HAVANA gene 82578023 82578616 594.0 + 0 ENSG00000262652.1 sense_intronic AC124283.3 2 OTTHUMG00000177961.1 overlapping_locus +31182 chr17 HAVANA gene 82587313 82588411 318.0 - 0 ENSG00000262147.1 antisense AC124283.2 2 OTTHUMG00000177962.1 +31183 chr17 HAVANA gene 82602989 82604178 1190.0 - 0 ENSG00000261845.2 antisense AC124283.1 2 OTTHUMG00000177963.1 +31184 chr17 HAVANA gene 82519713 82644662 9991.0 + 0 ENSG00000141568.20 protein_coding FOXK2 1 OTTHUMG00000140374.6 overlapping_locus +31185 chr17 HAVANA gene 82614562 82648553 3542.0 - 0 ENSG00000141580.15 protein_coding WDR45B 2 OTTHUMG00000150146.3 +31186 chr17 HAVANA gene 82648849 82650657 1809.0 + 0 ENSG00000279613.1 TEC AC124283.5 2 OTTHUMG00000177964.1 +31187 chr17 ENSEMBL gene 82668233 82668307 75.0 - 0 ENSG00000266107.1 miRNA MIR4525 3 +31188 chr17 HAVANA gene 82654973 82698728 6194.0 - 0 ENSG00000141542.10 protein_coding RAB40B 1 OTTHUMG00000177806.1 ncRNA_host +31189 chr17 HAVANA gene 82713908 82716255 898.0 - 0 ENSG00000263063.1 lincRNA AC024361.2 2 OTTHUMG00000177809.1 +31190 chr17 HAVANA gene 82716683 82730328 2971.0 + 0 ENSG00000141560.14 protein_coding FN3KRP 2 OTTHUMG00000177846.4 +31191 chr17 HAVANA gene 82729164 82734143 333.0 - 0 ENSG00000263321.1 lincRNA AC024361.3 2 OTTHUMG00000177810.1 +31192 chr17 HAVANA gene 82745068 82745709 642.0 + 0 ENSG00000262410.1 sense_intronic AC024361.1 2 OTTHUMG00000177848.1 overlapping_locus +31193 chr17 HAVANA gene 82735575 82751197 3872.0 + 0 ENSG00000167363.13 protein_coding FN3K 1 OTTHUMG00000177847.1 overlapping_locus +31194 chr17 HAVANA gene 82795486 82796095 413.0 - 0 ENSG00000263098.1 antisense AC068014.1 2 OTTHUMG00000177811.1 +31195 chr17 HAVANA gene 82829435 82840578 3713.0 - 0 ENSG00000141579.6 protein_coding ZNF750 2 OTTHUMG00000177822.3 +31196 chr17 HAVANA gene 82918282 82918785 504.0 + 0 ENSG00000262663.1 lincRNA AC087222.1 2 OTTHUMG00000177879.1 overlapping_locus +31197 chr17 HAVANA gene 82752064 82945922 13546.0 + 0 ENSG00000141556.20 protein_coding TBCD 2 OTTHUMG00000177878.4 overlapping_locus +31198 chr17 HAVANA gene 82978525 82981738 628.0 + 0 ENSG00000262339.5 antisense AC130371.1 2 OTTHUMG00000177789.1 +31199 chr17 HAVANA gene 82942155 83051810 6891.0 - 0 ENSG00000175711.8 protein_coding B3GNTL1 1 OTTHUMG00000177788.1 +31200 chr17 HAVANA gene 83079691 83095119 2626.0 + 0 ENSG00000176845.12 protein_coding METRNL 2 OTTHUMG00000177771.2 +31201 chr17 HAVANA gene 83098377 83098987 611.0 + 0 ENSG00000274370.1 lincRNA AC130371.2 2 OTTHUMG00000186762.1 +31202 chr17 HAVANA gene 83104255 83106910 2656.0 + 0 ENSG00000261888.1 lincRNA AC144831.1 2 OTTHUMG00000177772.1 +31203 chr17 HAVANA gene 83132647 83136150 3504.0 - 0 ENSG00000279143.1 TEC AC139099.4 2 OTTHUMG00000177773.2 +31204 chr17 HAVANA gene 83144131 83177607 641.0 + 0 ENSG00000262898.1 lincRNA AC139099.2 2 OTTHUMG00000177774.1 +31205 chr17 HAVANA gene 83211996 83221190 868.0 + 0 ENSG00000262952.1 lincRNA AC139099.3 2 OTTHUMG00000177775.1 +31206 chr17 HAVANA gene 83220527 83227721 2625.0 - 0 ENSG00000262094.1 lincRNA AC139099.1 2 OTTHUMG00000177776.1 +31207 chr17 HAVANA gene 83226897 83240804 2256.0 + 0 ENSG00000232938.2 transcribed_processed_pseudogene RPL23AP87 1 OTTHUMG00000177777.1 pseudo_consens +31208 chr18 HAVANA gene 11103 15928 1008.0 + 0 ENSG00000262352.1 lincRNA LINC02564 2 OTTHUMG00000177910.1 +31209 chr18 HAVANA gene 14195 16898 610.0 - 0 ENSG00000263305.1 lincRNA AP005530.1 2 OTTHUMG00000177911.1 +31210 chr18 HAVANA gene 45034 46047 763.0 + 0 ENSG00000262181.2 unprocessed_pseudogene AP001005.1 2 OTTHUMG00000177912.2 +31211 chr18 HAVANA gene 47390 49557 1633.0 - 0 ENSG00000173213.9 protein_coding TUBB8P12 2 OTTHUMG00000163448.6 +31212 chr18 HAVANA gene 49815 73545 741.0 - 0 ENSG00000282965.1 lincRNA AP001005.3 2 OTTHUMG00000191589.1 +31213 chr18 HAVANA gene 80140 88570 1248.0 - 0 ENSG00000262081.2 unprocessed_pseudogene IL9RP4 2 OTTHUMG00000177934.2 +31214 chr18 HAVANA gene 94202 94330 129.0 - 0 ENSG00000274446.1 processed_pseudogene AP001005.2 2 OTTHUMG00000187929.1 +31215 chr18 ENSEMBL gene 112256 112339 84.0 - 0 ENSG00000277521.1 miRNA MIR8078 3 +31216 chr18 HAVANA gene 109065 122219 2645.0 + 0 ENSG00000263006.6 transcribed_unprocessed_pseudogene ROCK1P1 2 OTTHUMG00000177913.2 +31217 chr18 HAVANA gene 158383 214629 5987.0 + 0 ENSG00000101557.14 protein_coding USP14 1 OTTHUMG00000178040.9 +31218 chr18 HAVANA gene 214520 268050 8102.0 - 0 ENSG00000079134.11 protein_coding THOC1 2 OTTHUMG00000178051.11 +31219 chr18 HAVANA gene 268148 270278 2131.0 + 0 ENSG00000263884.1 lincRNA AP000845.1 2 OTTHUMG00000178215.1 +31220 chr18 HAVANA gene 316737 319165 548.0 + 0 ENSG00000264514.1 lincRNA AP000915.1 2 OTTHUMG00000178216.1 +31221 chr18 HAVANA gene 423744 424416 454.0 - 0 ENSG00000265477.1 sense_intronic AP000915.2 2 OTTHUMG00000178218.1 overlapping_locus +31222 chr18 HAVANA gene 316740 500722 7340.0 - 0 ENSG00000158270.11 protein_coding COLEC12 2 OTTHUMG00000178145.2 overlapping_locus +31223 chr18 HAVANA gene 508568 515294 500.0 - 0 ENSG00000264265.1 lincRNA LINC01925 2 OTTHUMG00000178219.1 +31224 chr18 HAVANA gene 580357 582114 1758.0 + 0 ENSG00000177143.4 protein_coding CETN1 2 OTTHUMG00000131471.2 retrogene +31225 chr18 ENSEMBL gene 586517 586850 334.0 - 0 ENSG00000222174.1 misc_RNA RN7SKP146 3 +31226 chr18 HAVANA gene 596988 650334 3846.0 + 0 ENSG00000079101.16 protein_coding CLUL1 1 OTTHUMG00000178252.7 overlapping_locus +31227 chr18 HAVANA gene 650229 652843 2106.0 + 0 ENSG00000266456.1 antisense AP001178.3 2 OTTHUMG00000178258.1 overlapping_locus +31228 chr18 HAVANA gene 653985 657259 268.0 - 0 ENSG00000263727.1 sense_intronic AP001178.1 2 OTTHUMG00000178259.2 overlapping_locus +31229 chr18 HAVANA gene 641320 658340 976.0 - 0 ENSG00000176912.3 bidirectional_promoter_lncRNA TYMSOS 1 OTTHUMG00000178257.2 overlapping_locus +31230 chr18 HAVANA gene 657604 673578 2470.0 + 0 ENSG00000176890.15 protein_coding TYMS 1 OTTHUMG00000131473.6 +31231 chr18 HAVANA gene 706523 707648 326.0 + 0 ENSG00000265490.1 antisense AP001178.2 2 OTTHUMG00000178280.1 +31232 chr18 HAVANA gene 670324 712676 10616.0 - 0 ENSG00000132199.19 protein_coding ENOSF1 2 OTTHUMG00000131470.11 +31233 chr18 HAVANA gene 735746 737459 1714.0 + 0 ENSG00000266171.1 antisense AP001020.3 2 OTTHUMG00000178298.1 +31234 chr18 HAVANA gene 738058 739444 464.0 + 0 ENSG00000264339.1 antisense AP001020.1 2 OTTHUMG00000178299.1 +31235 chr18 HAVANA gene 738058 739662 1605.0 - 0 ENSG00000264635.1 sense_intronic AP001020.2 2 OTTHUMG00000178354.1 overlapping_locus +31236 chr18 ENSEMBL gene 797989 798135 147.0 - 0 ENSG00000206687.1 snRNA RNU1-109P 3 +31237 chr18 HAVANA gene 721588 812546 5100.0 - 0 ENSG00000176105.13 protein_coding YES1 2 OTTHUMG00000131472.8 ncRNA_host,overlapping_locus +31238 chr18 HAVANA gene 813274 813756 483.0 + 0 ENSG00000273355.1 lincRNA AP000894.4 2 OTTHUMG00000186207.1 +31239 chr18 HAVANA gene 832238 832469 232.0 + 0 ENSG00000266575.1 processed_pseudogene BOLA2P1 1 OTTHUMG00000178360.1 pseudo_consens +31240 chr18 HAVANA gene 856526 857045 520.0 + 0 ENSG00000264179.1 processed_pseudogene AP000894.1 1 OTTHUMG00000178361.1 pseudo_consens +31241 chr18 HAVANA gene 902766 906667 3902.0 - 0 ENSG00000265179.6 processed_transcript AP000894.2 2 OTTHUMG00000178281.3 overlapping_locus +31242 chr18 HAVANA gene 894435 907680 351.0 - 0 ENSG00000265671.1 antisense AP000894.3 2 OTTHUMG00000178362.1 overlapping_locus +31243 chr18 HAVANA gene 904943 912172 3805.0 + 0 ENSG00000141433.12 protein_coding ADCYAP1 2 OTTHUMG00000131479.5 +31244 chr18 HAVANA gene 926083 927993 861.0 - 0 ENSG00000259837.1 lincRNA LINC01904 2 OTTHUMG00000176096.1 +31245 chr18 HAVANA gene 962592 976883 657.0 - 0 ENSG00000272461.1 lincRNA AP005328.2 2 OTTHUMG00000185297.1 +31246 chr18 HAVANA gene 1159198 1160404 872.0 - 0 ENSG00000263505.1 processed_pseudogene AP005265.1 1 OTTHUMG00000178373.1 pseudo_consens +31247 chr18 HAVANA gene 976589 1174823 1356.0 + 0 ENSG00000263551.5 lincRNA AP005328.1 2 OTTHUMG00000178322.2 +31248 chr18 HAVANA gene 1176790 1177012 223.0 - 0 ENSG00000266251.1 processed_pseudogene COX6CP3 1 OTTHUMG00000178369.1 pseudo_consens +31249 chr18 ENSEMBL gene 1323794 1324085 292.0 - 0 ENSG00000199197.1 misc_RNA RN7SKP72 3 +31250 chr18 HAVANA gene 1357651 1357942 292.0 + 0 ENSG00000263396.1 processed_pseudogene AP005119.1 2 OTTHUMG00000178370.1 +31251 chr18 HAVANA gene 1362445 1363873 1105.0 - 0 ENSG00000265417.1 processed_pseudogene AP005119.2 1 OTTHUMG00000178371.1 pseudo_consens,overlapping_locus +31252 chr18 HAVANA gene 1254383 1408344 4063.0 - 0 ENSG00000132204.13 lincRNA LINC00470 2 OTTHUMG00000178327.2 ncRNA_host,overlapping_locus +31253 chr18 HAVANA gene 1509183 1647097 826.0 + 0 ENSG00000266602.1 lincRNA AC008109.1 2 OTTHUMG00000178359.2 +31254 chr18 HAVANA gene 1655177 1779955 505.0 + 0 ENSG00000266450.1 lincRNA AC019183.1 2 OTTHUMG00000178381.1 +31255 chr18 HAVANA gene 1780329 1782064 574.0 + 0 ENSG00000264080.1 lincRNA AP005057.1 2 OTTHUMG00000178382.1 +31256 chr18 HAVANA gene 1927727 1929094 997.0 - 0 ENSG00000264189.1 processed_pseudogene AP005262.1 1 OTTHUMG00000178386.2 pseudo_consens,overlapping_locus +31257 chr18 HAVANA gene 1883524 2489426 3798.0 - 0 ENSG00000263745.6 lincRNA AP005230.1 2 OTTHUMG00000178384.3 overlapping_locus +31258 chr18 ENSEMBL gene 2555358 2555492 135.0 + 0 ENSG00000238575.1 snoRNA RF01233 3 +31259 chr18 HAVANA gene 2561172 2562220 1049.0 - 0 ENSG00000266783.1 sense_intronic AP005136.2 2 OTTHUMG00000178364.1 overlapping_locus +31260 chr18 HAVANA gene 2568392 2569122 429.0 + 0 ENSG00000264150.1 processed_pseudogene AP005136.1 1 OTTHUMG00000178275.1 pseudo_consens +31261 chr18 HAVANA gene 2537525 2571509 5724.0 - 0 ENSG00000101574.14 protein_coding METTL4 1 OTTHUMG00000131482.6 overlapping_locus +31262 chr18 HAVANA gene 2593674 2594913 909.0 - 0 ENSG00000235422.1 processed_pseudogene KATNBL1P3 1 OTTHUMG00000178276.2 pseudo_consens +31263 chr18 HAVANA gene 2571511 2616635 3600.0 + 0 ENSG00000080986.12 protein_coding NDC80 1 OTTHUMG00000131483.4 +31264 chr18 ENSEMBL gene 2621090 2621201 112.0 + 0 ENSG00000202224.1 misc_RNA RF00019 3 +31265 chr18 ENSEMBL gene 2649761 2649867 107.0 - 0 ENSG00000200875.1 snRNA RNU6-340P 3 +31266 chr18 HAVANA gene 2652170 2655395 1429.0 - 0 ENSG00000266405.3 transcribed_processed_pseudogene CBX3P2 1 OTTHUMG00000178336.1 pseudo_consens +31267 chr18 ENSEMBL gene 2778941 2779057 117.0 + 0 ENSG00000207034.1 misc_RNA RF00019 3 +31268 chr18 HAVANA gene 2655738 2805017 12210.0 + 0 ENSG00000101596.15 protein_coding SMCHD1 1 OTTHUMG00000178235.5 ncRNA_host +31269 chr18 HAVANA gene 2688564 2833065 1049.0 - 0 ENSG00000266049.1 antisense AP001011.1 1 OTTHUMG00000178268.2 +31270 chr18 HAVANA gene 2847030 2915993 6435.0 + 0 ENSG00000132205.10 protein_coding EMILIN2 2 OTTHUMG00000128525.2 +31271 chr18 HAVANA gene 2920966 2921685 720.0 + 0 ENSG00000272625.1 antisense AP000919.4 2 OTTHUMG00000186209.1 +31272 chr18 HAVANA gene 2945550 2946890 1341.0 - 0 ENSG00000263606.1 transcribed_processed_pseudogene AP000919.1 1 OTTHUMG00000178277.2 pseudo_consens,overlapping_locus +31273 chr18 HAVANA gene 2948238 2960756 857.0 + 0 ENSG00000265907.1 antisense AP000919.2 2 OTTHUMG00000178207.1 +31274 chr18 HAVANA gene 2967018 2985410 568.0 + 0 ENSG00000266397.1 antisense AP000919.3 2 OTTHUMG00000178208.1 +31275 chr18 HAVANA gene 2990652 2991078 427.0 + 0 ENSG00000264186.1 processed_pseudogene SNRPCP4 1 OTTHUMG00000178282.1 pseudo_consens +31276 chr18 HAVANA gene 2916994 3013315 6800.0 - 0 ENSG00000101577.9 protein_coding LPIN2 1 OTTHUMG00000131508.8 overlapping_locus +31277 chr18 HAVANA gene 3025069 3025387 319.0 - 0 ENSG00000277447.1 processed_pseudogene AP005431.1 2 OTTHUMG00000187930.1 +31278 chr18 ENSEMBL gene 3025434 3025566 133.0 - 0 ENSG00000252258.1 snoRNA RF00156 3 +31279 chr18 ENSEMBL gene 3093568 3093629 62.0 + 0 ENSG00000252353.1 snRNA RNU7-25P 3 +31280 chr18 HAVANA gene 3066807 3220108 6574.0 - 0 ENSG00000101605.12 protein_coding MYOM1 2 OTTHUMG00000178209.6 +31281 chr18 HAVANA gene 3246401 3247086 686.0 - 0 ENSG00000272688.1 lincRNA AP005329.3 2 OTTHUMG00000186210.1 +31282 chr18 HAVANA gene 3190397 3247277 1771.0 + 0 ENSG00000265399.1 antisense AP005329.2 2 OTTHUMG00000178339.1 +31283 chr18 HAVANA gene 3247481 3256236 3245.0 + 0 ENSG00000101608.12 protein_coding MYL12A 2 OTTHUMG00000131509.7 +31284 chr18 HAVANA gene 3255436 3261850 1063.0 - 0 ENSG00000264235.5 antisense AP005329.1 2 OTTHUMG00000178273.2 +31285 chr18 HAVANA gene 3261479 3278431 1932.0 + 0 ENSG00000118680.13 protein_coding MYL12B 2 OTTHUMG00000131510.4 +31286 chr18 HAVANA gene 3284145 3327292 864.0 + 0 ENSG00000266578.1 lincRNA AP001025.1 2 OTTHUMG00000178365.1 +31287 chr18 HAVANA gene 3347776 3350559 404.0 - 0 ENSG00000259256.1 lincRNA LINC01895 2 OTTHUMG00000172322.1 +31288 chr18 HAVANA gene 3377916 3378247 332.0 - 0 ENSG00000240364.1 processed_pseudogene RPL31P59 1 OTTHUMG00000158159.1 pseudo_consens +31289 chr18 HAVANA gene 3394889 3395312 424.0 + 0 ENSG00000265243.1 IG_C_pseudogene IGLJCOR18 1 OTTHUMG00000178366.2 pseudo_consens +31290 chr18 HAVANA gene 3406342 3406818 477.0 - 0 ENSG00000243720.1 processed_pseudogene RPL21P127 1 OTTHUMG00000158160.1 pseudo_consens +31291 chr18 HAVANA gene 3415145 3415580 436.0 + 0 ENSG00000263460.1 transcribed_processed_pseudogene BOD1P1 1 OTTHUMG00000178413.1 pseudo_consens,overlapping_locus +31292 chr18 HAVANA gene 3411608 3459978 8222.0 + 0 ENSG00000177426.20 protein_coding TGIF1 1 OTTHUMG00000131511.11 overlapping_locus +31293 chr18 HAVANA gene 3466250 3478978 1051.0 + 0 ENSG00000266835.5 lincRNA GAPLINC 2 OTTHUMG00000178331.2 +31294 chr18 ENSEMBL gene 3571215 3571511 297.0 - 0 ENSG00000241223.3 misc_RNA RN7SL39P 3 +31295 chr18 HAVANA gene 3580169 3580754 586.0 + 0 ENSG00000266373.1 processed_pseudogene AP002472.1 2 OTTHUMG00000178383.1 +31296 chr18 HAVANA gene 3593732 3598352 2105.0 + 0 ENSG00000177337.7 antisense DLGAP1-AS1 2 OTTHUMG00000177863.2 +31297 chr18 HAVANA gene 3603000 3608336 3171.0 + 0 ENSG00000262001.1 antisense DLGAP1-AS2 2 OTTHUMG00000177864.1 +31298 chr18 HAVANA gene 3653410 3656282 1455.0 + 0 ENSG00000266401.1 antisense AP002478.1 2 OTTHUMG00000178410.1 +31299 chr18 HAVANA gene 3770017 3771430 557.0 - 0 ENSG00000266513.1 sense_intronic AP002478.2 2 OTTHUMG00000178332.1 overlapping_locus +31300 chr18 ENSEMBL gene 3885353 3885432 80.0 + 0 ENSG00000275518.1 miRNA MIR6718 3 +31301 chr18 ENSEMBL gene 3894699 3894805 107.0 - 0 ENSG00000207278.1 snRNA RNU6-831P 3 +31302 chr18 HAVANA gene 3878180 3897069 1332.0 + 0 ENSG00000263724.1 antisense DLGAP1-AS3 2 OTTHUMG00000178391.1 ncRNA_host +31303 chr18 HAVANA gene 3977649 3978615 967.0 - 0 ENSG00000250933.1 processed_pseudogene GAPDHP66 1 OTTHUMG00000160055.1 pseudo_consens,overlapping_locus +31304 chr18 HAVANA gene 3962353 4013943 757.0 + 0 ENSG00000263878.1 antisense DLGAP1-AS4 2 OTTHUMG00000178387.1 +31305 chr18 HAVANA gene 4264602 4295405 2878.0 + 0 ENSG00000261520.5 antisense DLGAP1-AS5 2 OTTHUMG00000176106.1 +31306 chr18 HAVANA gene 4430945 4431152 208.0 + 0 ENSG00000264246.1 processed_pseudogene AP005208.1 1 OTTHUMG00000178414.1 pseudo_consens +31307 chr18 HAVANA gene 3496032 4455335 12106.0 - 0 ENSG00000170579.16 protein_coding DLGAP1 1 OTTHUMG00000131537.11 ncRNA_host,overlapping_locus +31308 chr18 HAVANA gene 4459230 4459458 229.0 + 0 ENSG00000265545.1 processed_pseudogene AP005403.1 1 OTTHUMG00000178415.1 pseudo_consens +31309 chr18 HAVANA gene 5002759 5003254 496.0 - 0 ENSG00000264775.1 processed_pseudogene PPIAP14 1 OTTHUMG00000178431.1 pseudo_consens,overlapping_locus +31310 chr18 HAVANA gene 4775054 5004537 631.0 - 0 ENSG00000266268.5 lincRNA AP005203.1 2 OTTHUMG00000178409.1 overlapping_locus +31311 chr18 HAVANA gene 5081182 5095815 815.0 + 0 ENSG00000265514.1 lincRNA LINC01892 2 OTTHUMG00000178432.1 +31312 chr18 HAVANA gene 5132749 5133229 481.0 - 0 ENSG00000215368.5 processed_pseudogene BOD1P2 1 OTTHUMG00000178685.1 pseudo_consens +31313 chr18 HAVANA gene 5159332 5171026 547.0 + 0 ENSG00000266153.1 lincRNA AP005380.1 2 OTTHUMG00000178450.1 +31314 chr18 HAVANA gene 5145285 5197503 711.0 - 0 ENSG00000231824.3 protein_coding AKAIN1 2 OTTHUMG00000178457.1 +31315 chr18 HAVANA gene 5197165 5215497 1590.0 + 0 ENSG00000285575.1 antisense AP001496.4 2 OTTHUMG00000192796.1 +31316 chr18 HAVANA gene 5232876 5238526 977.0 - 0 ENSG00000265091.5 lincRNA AP001496.2 2 OTTHUMG00000178981.1 overlapping_locus +31317 chr18 HAVANA gene 5236724 5238598 1875.0 - 0 ENSG00000264575.1 lincRNA LINC00526 2 OTTHUMG00000178804.1 overlapping_locus +31318 chr18 HAVANA gene 5240255 5241167 913.0 - 0 ENSG00000265188.1 processed_pseudogene AP001496.3 1 OTTHUMG00000178806.1 pseudo_consens +31319 chr18 HAVANA gene 5237826 5246508 6652.0 + 0 ENSG00000263753.7 lincRNA LINC00667 2 OTTHUMG00000178805.4 +31320 chr18 HAVANA gene 5289019 5297053 4120.0 - 0 ENSG00000198081.10 protein_coding ZBTB14 2 OTTHUMG00000131563.4 +31321 chr18 HAVANA gene 5310396 5317664 471.0 + 0 ENSG00000264254.1 lincRNA AP001496.1 2 OTTHUMG00000178807.1 +31322 chr18 HAVANA gene 5381641 5385330 463.0 - 0 ENSG00000266288.1 lincRNA AP005671.1 2 OTTHUMG00000178831.1 +31323 chr18 HAVANA gene 5463627 5480975 578.0 + 0 ENSG00000265316.1 antisense AP005059.2 2 OTTHUMG00000178868.1 +31324 chr18 HAVANA gene 5567130 5570942 456.0 + 0 ENSG00000264000.1 antisense AP005059.1 2 OTTHUMG00000178869.1 +31325 chr18 HAVANA gene 5392381 5630700 12203.0 - 0 ENSG00000082397.17 protein_coding EPB41L3 2 OTTHUMG00000131562.12 +31326 chr18 ENSEMBL gene 5840695 5840833 139.0 + 0 ENSG00000272380.1 miRNA MIR3976 3 +31327 chr18 HAVANA gene 5748819 5876328 1820.0 + 0 ENSG00000261738.6 lincRNA MIR3976HG 2 OTTHUMG00000176112.3 ncRNA_host +31328 chr18 HAVANA gene 5882072 5895955 10638.0 - 0 ENSG00000206432.4 protein_coding TMEM200C 2 OTTHUMG00000178423.4 +31329 chr18 HAVANA gene 5887487 5909122 847.0 + 0 ENSG00000264449.5 antisense AP005433.1 2 OTTHUMG00000178433.2 +31330 chr18 HAVANA gene 5956101 5960785 244.0 + 0 ENSG00000265487.1 antisense AP001021.1 2 OTTHUMG00000178850.1 +31331 chr18 ENSEMBL gene 6017723 6017839 117.0 - 0 ENSG00000200637.1 snRNA RNU5F-3P 3 +31332 chr18 HAVANA gene 6025091 6082455 544.0 + 0 ENSG00000266846.1 antisense AP001021.2 2 OTTHUMG00000178851.1 +31333 chr18 HAVANA gene 6256747 6260934 2044.0 + 0 ENSG00000264707.1 lincRNA L3MBTL4-AS1 2 OTTHUMG00000178852.1 +31334 chr18 ENSEMBL gene 6374361 6374425 65.0 - 0 ENSG00000283532.1 miRNA MIR4317 3 +31335 chr18 HAVANA gene 6394847 6398020 3174.0 - 0 ENSG00000279885.1 TEC AP005060.1 2 OTTHUMG00000131573.3 overlapping_locus +31336 chr18 HAVANA gene 5954706 6415237 7959.0 - 0 ENSG00000154655.15 protein_coding L3MBTL4 2 OTTHUMG00000178980.2 ncRNA_host,overlapping_locus +31337 chr18 ENSEMBL gene 6454962 6455068 107.0 + 0 ENSG00000199272.1 snRNA RNU6-349P 3 +31338 chr18 HAVANA gene 6462144 6463015 872.0 - 0 ENSG00000235552.4 transcribed_processed_pseudogene RPL6P27 1 OTTHUMG00000158161.2 pseudo_consens +31339 chr18 HAVANA gene 6493420 6495668 567.0 + 0 ENSG00000266065.1 lincRNA AP005202.2 2 OTTHUMG00000178456.1 +31340 chr18 HAVANA gene 6557822 6558654 658.0 + 0 ENSG00000265174.1 sense_intronic AP005202.1 2 OTTHUMG00000178468.1 overlapping_locus +31341 chr18 HAVANA gene 6511416 6590653 603.0 + 0 ENSG00000265944.1 lincRNA LINC01387 2 OTTHUMG00000178464.2 overlapping_locus +31342 chr18 ENSEMBL gene 6601540 6601836 297.0 + 0 ENSG00000243591.3 misc_RNA RN7SL282P 3 +31343 chr18 HAVANA gene 6641971 6642478 508.0 - 0 ENSG00000261627.1 lincRNA AP005205.1 2 OTTHUMG00000176116.1 +31344 chr18 HAVANA gene 6727053 6728981 1929.0 + 0 ENSG00000279479.1 TEC AP005205.3 2 OTTHUMG00000178469.1 +31345 chr18 HAVANA gene 6728821 6729862 491.0 - 0 ENSG00000266441.1 antisense AP005205.2 2 OTTHUMG00000178470.1 +31346 chr18 HAVANA gene 6873399 6875024 544.0 - 0 ENSG00000263797.1 antisense AP005210.1 2 OTTHUMG00000178874.1 +31347 chr18 HAVANA gene 6729718 6915716 11910.0 + 0 ENSG00000088756.12 protein_coding ARHGAP28 1 OTTHUMG00000167698.10 +31348 chr18 HAVANA gene 6926944 6928210 1100.0 + 0 ENSG00000264127.1 processed_pseudogene SCML2P1 1 OTTHUMG00000178891.2 pseudo_consens +31349 chr18 HAVANA gene 6919496 6929966 4866.0 - 0 ENSG00000265933.5 lincRNA LINC00668 2 OTTHUMG00000178875.1 +31350 chr18 ENSEMBL gene 6936912 6937020 109.0 - 0 ENSG00000251897.1 snRNA RNU6-916P 3 +31351 chr18 HAVANA gene 6954677 6957419 2295.0 + 0 ENSG00000265069.1 antisense AP002409.1 2 OTTHUMG00000178876.1 +31352 chr18 HAVANA gene 7076817 7080123 607.0 + 0 ENSG00000264475.1 antisense AP005062.1 2 OTTHUMG00000179008.1 +31353 chr18 HAVANA gene 6941744 7117814 15872.0 - 0 ENSG00000101680.14 protein_coding LAMA1 2 OTTHUMG00000133478.4 +31354 chr18 HAVANA gene 7134931 7135819 889.0 + 0 ENSG00000263716.1 processed_pseudogene SLC25A51P2 1 OTTHUMG00000178877.1 pseudo_consens +31355 chr18 HAVANA gene 7231125 7232047 923.0 + 0 ENSG00000206422.2 protein_coding LRRC30 2 OTTHUMG00000178479.1 +31356 chr18 ENSEMBL gene 7301020 7301153 134.0 - 0 ENSG00000212626.1 snoRNA RF00554 3 +31357 chr18 HAVANA gene 7741310 7754831 1737.0 - 0 ENSG00000266767.1 antisense AP000897.2 2 OTTHUMG00000178929.1 +31358 chr18 HAVANA gene 7814118 7815730 1613.0 + 0 ENSG00000264596.1 sense_intronic AP000897.1 2 OTTHUMG00000178896.1 overlapping_locus +31359 chr18 ENSEMBL gene 7995570 7995785 216.0 + 0 ENSG00000199856.2 snoRNA RF00012 3 +31360 chr18 HAVANA gene 8154558 8155070 513.0 + 0 ENSG00000273368.1 sense_intronic AC006566.1 2 OTTHUMG00000186214.1 overlapping_locus +31361 chr18 HAVANA gene 8360820 8367034 616.0 - 0 ENSG00000266149.1 antisense AP001094.3 2 OTTHUMG00000178930.1 +31362 chr18 HAVANA gene 8402847 8405161 2315.0 + 0 ENSG00000265413.1 sense_intronic AP001094.2 2 OTTHUMG00000178912.1 overlapping_locus +31363 chr18 HAVANA gene 7566782 8406861 9900.0 + 0 ENSG00000173482.16 protein_coding PTPRM 2 OTTHUMG00000131575.5 ncRNA_host,overlapping_locus +31364 chr18 HAVANA gene 8406761 8406953 193.0 - 0 ENSG00000263970.1 antisense AP001094.1 2 OTTHUMG00000179009.1 +31365 chr18 HAVANA gene 8412129 8414304 2176.0 + 0 ENSG00000266613.1 processed_pseudogene RFWD2P1 1 OTTHUMG00000178931.1 pseudo_consens +31366 chr18 ENSEMBL gene 8471831 8472128 298.0 + 0 ENSG00000242985.3 misc_RNA RN7SL50P 3 +31367 chr18 HAVANA gene 8486997 8513849 1586.0 + 0 ENSG00000229442.2 unitary_pseudogene THEMIS3P 2 OTTHUMG00000154734.2 +31368 chr18 HAVANA gene 8545635 8546817 839.0 + 0 ENSG00000225212.4 processed_pseudogene AKR1B1P6 1 OTTHUMG00000178948.1 pseudo_consens +31369 chr18 HAVANA gene 8635179 8636347 780.0 - 0 ENSG00000266708.1 antisense AP001793.1 2 OTTHUMG00000178932.1 +31370 chr18 HAVANA gene 8609437 8639382 2476.0 + 0 ENSG00000206418.4 protein_coding RAB12 2 OTTHUMG00000178949.2 +31371 chr18 HAVANA gene 8688022 8688410 389.0 - 0 ENSG00000263935.1 processed_pseudogene TOMM20P3 1 OTTHUMG00000179014.2 pseudo_consens +31372 chr18 HAVANA gene 8695856 8707621 818.0 - 0 ENSG00000265962.1 antisense GACAT2 2 OTTHUMG00000178955.1 +31373 chr18 ENSEMBL gene 8720034 8720132 99.0 - 0 ENSG00000252319.1 misc_RNA RF00019 3 +31374 chr18 HAVANA gene 8801656 8802305 650.0 + 0 ENSG00000272788.1 sense_intronic AP000864.1 2 OTTHUMG00000186222.1 overlapping_locus +31375 chr18 HAVANA gene 8705661 8832778 12665.0 + 0 ENSG00000168502.17 protein_coding MTCL1 1 OTTHUMG00000131594.12 overlapping_locus +31376 chr18 HAVANA gene 9020029 9020764 736.0 + 0 ENSG00000242058.2 processed_pseudogene RPS4XP19 1 OTTHUMG00000158162.4 pseudo_consens +31377 chr18 HAVANA gene 9112404 9115877 544.0 - 0 ENSG00000263847.1 antisense AP005899.1 2 OTTHUMG00000179034.3 +31378 chr18 HAVANA gene 9102630 9134345 2711.0 + 0 ENSG00000178127.12 protein_coding NDUFV2 2 OTTHUMG00000131593.6 overlapping_locus +31379 chr18 HAVANA gene 9121265 9136645 1432.0 - 0 ENSG00000266053.2 antisense NDUFV2-AS1 2 OTTHUMG00000179232.2 +31380 chr18 ENSEMBL gene 9249649 9249746 98.0 - 0 ENSG00000200883.1 misc_RNA RF00019 3 +31381 chr18 ENSEMBL gene 9250110 9250211 102.0 + 0 ENSG00000207092.1 misc_RNA RF00019 3 +31382 chr18 HAVANA gene 9102736 9254346 1050.0 + 0 ENSG00000265257.5 processed_transcript AP005263.1 2 OTTHUMG00000179147.1 ncRNA_host,overlapping_locus +31383 chr18 HAVANA gene 9259388 9260390 1003.0 + 0 ENSG00000273284.1 sense_intronic AP001033.2 2 OTTHUMG00000186223.1 overlapping_locus +31384 chr18 HAVANA gene 9136228 9285985 12252.0 + 0 ENSG00000101745.16 protein_coding ANKRD12 1 OTTHUMG00000131595.6 ncRNA_host,overlapping_locus +31385 chr18 HAVANA gene 9315194 9334441 466.0 - 0 ENSG00000264964.1 lincRNA AP001033.1 2 OTTHUMG00000179109.1 +31386 chr18 HAVANA gene 9334767 9402420 4435.0 + 0 ENSG00000128791.11 protein_coding TWSG1 2 OTTHUMG00000131597.4 +31387 chr18 HAVANA gene 9473421 9474006 586.0 - 0 ENSG00000273335.1 lincRNA AP005432.2 2 OTTHUMG00000186225.1 +31388 chr18 HAVANA gene 9506242 9509726 3485.0 + 0 ENSG00000266805.1 sense_intronic AP005432.1 2 OTTHUMG00000178671.1 overlapping_locus +31389 chr18 ENSEMBL gene 9518119 9518260 142.0 - 0 ENSG00000251994.1 snRNA RNU2-27P 3 +31390 chr18 HAVANA gene 9475009 9538116 8043.0 + 0 ENSG00000017797.12 protein_coding RALBP1 2 OTTHUMG00000131596.5 overlapping_locus +31391 chr18 HAVANA gene 9587386 9590182 534.0 + 0 ENSG00000266541.1 antisense AP001381.1 2 OTTHUMG00000178596.2 +31392 chr18 HAVANA gene 9546791 9615240 8131.0 - 0 ENSG00000154845.15 protein_coding PPP4R1 2 OTTHUMG00000137466.4 +31393 chr18 ENSEMBL gene 9617964 9618072 109.0 - 0 ENSG00000212572.1 snRNA RNU6-903P 3 +31394 chr18 HAVANA gene 9615264 9619363 379.0 + 0 ENSG00000263627.1 lincRNA PPP4R1-AS1 2 OTTHUMG00000178597.1 +31395 chr18 HAVANA gene 9646110 9648502 970.0 + 0 ENSG00000285594.1 lincRNA AP000902.2 2 OTTHUMG00000193141.1 +31396 chr18 HAVANA gene 9678248 9679493 1246.0 - 0 ENSG00000264644.1 processed_pseudogene KRT18P8 1 OTTHUMG00000178672.1 pseudo_consens +31397 chr18 HAVANA gene 9734882 9735602 368.0 - 0 ENSG00000266891.1 processed_pseudogene AP000902.1 1 OTTHUMG00000178673.1 pseudo_consens +31398 chr18 HAVANA gene 9785108 9787805 1166.0 + 0 ENSG00000266127.1 processed_pseudogene ZNF415P1 2 OTTHUMG00000178559.1 overlapping_locus +31399 chr18 ENSEMBL gene 9830330 9830627 298.0 - 0 ENSG00000242651.3 misc_RNA RN7SL862P 3 +31400 chr18 HAVANA gene 9840340 9841559 1030.0 - 0 ENSG00000285653.1 antisense AC006238.2 2 OTTHUMG00000193162.1 +31401 chr18 ENSEMBL gene 9844717 9844846 130.0 - 0 ENSG00000252680.1 rRNA_pseudogene RNA5SP449 3 +31402 chr18 HAVANA gene 9708165 9862551 5586.0 + 0 ENSG00000168461.12 protein_coding RAB31 2 OTTHUMG00000178513.4 overlapping_locus +31403 chr18 HAVANA gene 9880580 9880886 307.0 - 0 ENSG00000265564.1 processed_pseudogene PIGPP4 1 OTTHUMG00000178598.1 pseudo_consens +31404 chr18 HAVANA gene 9885726 9889275 3392.0 + 0 ENSG00000168454.11 protein_coding TXNDC2 2 OTTHUMG00000131602.5 retrogene +31405 chr18 HAVANA gene 9912316 9912849 534.0 - 0 ENSG00000272799.1 lincRNA AC006238.1 2 OTTHUMG00000186228.1 +31406 chr18 ENSEMBL gene 9923920 9924021 102.0 + 0 ENSG00000223138.1 rRNA_pseudogene RNA5SP450 3 +31407 chr18 HAVANA gene 9914002 9960021 11880.0 + 0 ENSG00000101558.13 protein_coding VAPA 2 OTTHUMG00000131603.5 +31408 chr18 HAVANA gene 10125340 10144406 412.0 + 0 ENSG00000265554.1 lincRNA AP005271.1 2 OTTHUMG00000178508.1 +31409 chr18 HAVANA gene 10323132 10372380 928.0 - 0 ENSG00000264876.1 lincRNA AP005209.1 2 OTTHUMG00000178510.1 +31410 chr18 HAVANA gene 10375103 10378114 472.0 + 0 ENSG00000266102.1 lincRNA AP006219.1 2 OTTHUMG00000178511.1 +31411 chr18 HAVANA gene 10405133 10414515 3225.0 - 0 ENSG00000260913.1 lincRNA LINC01254 2 OTTHUMG00000176120.1 +31412 chr18 HAVANA gene 10454628 10489948 5943.0 + 0 ENSG00000154856.12 protein_coding APCDD1 2 OTTHUMG00000131635.4 +31413 chr18 HAVANA gene 10525905 10552761 5586.0 + 0 ENSG00000134265.12 protein_coding NAPG 1 OTTHUMG00000179119.5 +31414 chr18 HAVANA gene 10594590 10604798 855.0 + 0 ENSG00000265728.1 lincRNA AP001099.1 2 OTTHUMG00000179172.1 +31415 chr18 HAVANA gene 10622123 10622267 145.0 - 0 ENSG00000264503.1 processed_pseudogene AP001180.3 2 OTTHUMG00000178567.1 overlapping_locus +31416 chr18 HAVANA gene 10623876 10624305 430.0 - 0 ENSG00000264311.1 processed_pseudogene CCDC58P1 1 OTTHUMG00000178563.1 pseudo_consens,overlapping_locus +31417 chr18 HAVANA gene 10612304 10626353 860.0 - 0 ENSG00000266604.1 lincRNA LINC01887 2 OTTHUMG00000178562.1 overlapping_locus +31418 chr18 HAVANA gene 10627646 10628846 422.0 - 0 ENSG00000264072.1 lincRNA AP001180.2 2 OTTHUMG00000178556.1 +31419 chr18 HAVANA gene 10632238 10632396 159.0 + 0 ENSG00000266470.1 unprocessed_pseudogene AP001180.5 2 OTTHUMG00000179208.1 +31420 chr18 HAVANA gene 10636670 10637399 730.0 + 0 ENSG00000265038.1 processed_pseudogene PMM2P1 1 OTTHUMG00000178557.1 pseudo_consens +31421 chr18 HAVANA gene 10661933 10666887 3566.0 + 0 ENSG00000260779.1 antisense AP001180.1 2 OTTHUMG00000176124.1 +31422 chr18 HAVANA gene 10704297 10709599 823.0 + 0 ENSG00000264843.1 antisense AP001180.4 2 OTTHUMG00000178535.1 +31423 chr18 HAVANA gene 10724619 10728539 3016.0 + 0 ENSG00000264714.1 transcribed_processed_pseudogene KIAA0895LP1 1 OTTHUMG00000178481.2 pseudo_consens +31424 chr18 ENSEMBL gene 10759584 10759649 66.0 - 0 ENSG00000274838.1 miRNA MIR6788 3 +31425 chr18 HAVANA gene 10893617 10908783 800.0 + 0 ENSG00000263952.5 antisense AP005120.1 2 OTTHUMG00000178501.1 +31426 chr18 HAVANA gene 10666483 11148762 14796.0 - 0 ENSG00000154864.12 protein_coding PIEZO2 1 OTTHUMG00000178507.14 ncRNA_host +31427 chr18 HAVANA gene 11326270 11328832 1647.0 + 0 ENSG00000263682.1 unprocessed_pseudogene AP005139.1 1 OTTHUMG00000178558.2 pseudo_consens +31428 chr18 HAVANA gene 11366913 11378409 810.0 - 0 ENSG00000267051.1 lincRNA AP005229.1 2 OTTHUMG00000178502.1 +31429 chr18 HAVANA gene 11390033 11390729 697.0 - 0 ENSG00000273119.1 lincRNA AP005229.2 2 OTTHUMG00000186230.1 +31430 chr18 HAVANA gene 11454478 11465996 504.0 + 0 ENSG00000267425.1 lincRNA LINC01928 2 OTTHUMG00000178503.1 +31431 chr18 HAVANA gene 11447756 11489369 279.0 - 0 ENSG00000267564.1 lincRNA AP001109.1 2 OTTHUMG00000180595.1 +31432 chr18 HAVANA gene 11488570 11506983 1983.0 + 0 ENSG00000267252.5 lincRNA LINC01255 2 OTTHUMG00000180596.1 +31433 chr18 HAVANA gene 11552366 11552847 482.0 + 0 ENSG00000267371.1 processed_pseudogene AP001017.1 1 OTTHUMG00000180597.1 pseudo_consens +31434 chr18 HAVANA gene 11609596 11610612 1017.0 + 0 ENSG00000236396.8 protein_coding SLC35G4 2 OTTHUMG00000180598.4 +31435 chr18 HAVANA gene 11618208 11618315 108.0 + 0 ENSG00000267794.1 processed_pseudogene AP001120.4 2 OTTHUMG00000180599.1 +31436 chr18 HAVANA gene 11620717 11621158 296.0 - 0 ENSG00000267143.1 lincRNA AP001120.2 2 OTTHUMG00000180604.1 overlapping_locus +31437 chr18 HAVANA gene 11619509 11639699 1133.0 - 0 ENSG00000257513.7 transcribed_unprocessed_pseudogene NPIPB1P 2 OTTHUMG00000170512.3 overlapping_locus +31438 chr18 HAVANA gene 11644336 11644824 489.0 + 0 ENSG00000267773.1 unprocessed_pseudogene AP001120.3 2 OTTHUMG00000180600.1 +31439 chr18 ENSEMBL gene 11654885 11654941 57.0 - 0 ENSG00000283492.1 miRNA MIR7153 3 +31440 chr18 HAVANA gene 11666456 11670165 3710.0 - 0 ENSG00000260759.1 lincRNA AP001120.1 2 OTTHUMG00000176127.1 +31441 chr18 HAVANA gene 11745626 11747581 1618.0 + 0 ENSG00000267333.1 processed_pseudogene ASNSP6 1 OTTHUMG00000180610.1 pseudo_consens,overlapping_locus +31442 chr18 HAVANA gene 11810406 11811484 568.0 - 0 ENSG00000267455.1 antisense AP005137.1 2 OTTHUMG00000180620.1 +31443 chr18 HAVANA gene 11851414 11852751 553.0 - 0 ENSG00000267165.1 antisense CHMP1B-AS1 2 OTTHUMG00000180621.1 +31444 chr18 HAVANA gene 11851396 11854449 3054.0 + 0 ENSG00000255112.2 protein_coding CHMP1B 2 OTTHUMG00000165820.2 overlapping_locus,retrogene +31445 chr18 HAVANA gene 11857155 11857554 400.0 - 0 ENSG00000272703.1 antisense AP005137.2 2 OTTHUMG00000186231.1 +31446 chr18 HAVANA gene 11688956 11885685 8445.0 + 0 ENSG00000141404.15 protein_coding GNAL 1 OTTHUMG00000131660.4 overlapping_locus +31447 chr18 HAVANA gene 11908712 11909223 512.0 + 0 ENSG00000273141.1 antisense AP001269.4 2 OTTHUMG00000186232.1 +31448 chr18 HAVANA gene 11882622 11909223 7630.0 - 0 ENSG00000154889.16 protein_coding MPPE1 1 OTTHUMG00000131661.6 +31449 chr18 HAVANA gene 11910634 11914344 379.0 - 0 ENSG00000267079.1 lincRNA AP001269.2 2 OTTHUMG00000180632.1 +31450 chr18 HAVANA gene 11928838 11929476 329.0 + 0 ENSG00000267661.1 processed_pseudogene AP001269.3 1 OTTHUMG00000180663.1 pseudo_consens +31451 chr18 HAVANA gene 11993988 11994938 528.0 - 0 ENSG00000266955.1 antisense AP001269.1 2 OTTHUMG00000180664.1 +31452 chr18 HAVANA gene 11981025 12030883 3825.0 + 0 ENSG00000141401.11 protein_coding IMPA2 2 OTTHUMG00000131693.4 +31453 chr18 HAVANA gene 12031178 12032181 527.0 - 0 ENSG00000267480.1 antisense AP001542.3 2 OTTHUMG00000180665.1 +31454 chr18 HAVANA gene 12040101 12040300 200.0 - 0 ENSG00000266995.1 processed_pseudogene AP001542.1 2 OTTHUMG00000180680.1 +31455 chr18 HAVANA gene 12050309 12050672 364.0 - 0 ENSG00000267292.1 processed_pseudogene AP001542.2 1 OTTHUMG00000180681.1 pseudo_consens +31456 chr18 HAVANA gene 12056676 12057822 1147.0 - 0 ENSG00000212712.2 processed_pseudogene AP002414.1 1 OTTHUMG00000073721.2 pseudo_consens +31457 chr18 HAVANA gene 12067173 12068417 1148.0 - 0 ENSG00000267533.1 processed_pseudogene AP002414.4 1 OTTHUMG00000180682.1 pseudo_consens +31458 chr18 HAVANA gene 12073232 12076654 3423.0 - 0 ENSG00000256616.3 transcribed_processed_pseudogene AP002414.2 1 OTTHUMG00000180683.1 pseudo_consens +31459 chr18 HAVANA gene 12081540 12085267 258.0 + 0 ENSG00000267722.1 lincRNA AP002414.5 2 OTTHUMG00000180666.1 +31460 chr18 HAVANA gene 12091674 12093141 1468.0 - 0 ENSG00000267478.1 processed_pseudogene AP002414.3 1 OTTHUMG00000180684.1 pseudo_consens +31461 chr18 ENSEMBL gene 12098427 12098532 106.0 + 0 ENSG00000200827.1 snRNA RNU6-324P 3 +31462 chr18 HAVANA gene 12101997 12102470 474.0 - 0 ENSG00000267162.1 processed_pseudogene SDHDP1 1 OTTHUMG00000180685.1 pseudo_consens +31463 chr18 HAVANA gene 12093853 12129749 4812.0 + 0 ENSG00000181626.11 protein_coding ANKRD62 2 OTTHUMG00000180673.3 ncRNA_host +31464 chr18 HAVANA gene 12192203 12192934 732.0 - 0 ENSG00000267116.1 processed_pseudogene AP005264.2 1 OTTHUMG00000180715.1 pseudo_consens +31465 chr18 HAVANA gene 12199345 12200089 745.0 + 0 ENSG00000279285.1 TEC AP005264.6 2 OTTHUMG00000180716.1 +31466 chr18 HAVANA gene 12200779 12201979 422.0 + 0 ENSG00000267643.1 lincRNA AP005264.4 2 OTTHUMG00000180717.1 +31467 chr18 HAVANA gene 12211378 12211807 430.0 + 0 ENSG00000267076.1 processed_pseudogene CCDC58P3 1 OTTHUMG00000180719.1 pseudo_consens,overlapping_locus +31468 chr18 HAVANA gene 12201982 12223539 2209.0 + 0 ENSG00000267733.5 transcribed_processed_pseudogene AP005264.5 2 OTTHUMG00000180718.1 overlapping_locus +31469 chr18 HAVANA gene 12230411 12231573 485.0 - 0 ENSG00000267247.1 lincRNA AP005264.3 2 OTTHUMG00000180720.1 +31470 chr18 HAVANA gene 12246589 12247055 467.0 + 0 ENSG00000267663.1 processed_pseudogene PPIAP56 1 OTTHUMG00000180721.1 pseudo_consens +31471 chr18 HAVANA gene 12254319 12277595 1852.0 + 0 ENSG00000176194.17 protein_coding CIDEA 2 OTTHUMG00000131691.3 +31472 chr18 HAVANA gene 12279427 12282739 3313.0 + 0 ENSG00000280302.1 TEC AP005264.7 2 OTTHUMG00000176130.1 +31473 chr18 HAVANA gene 12288308 12291488 733.0 + 0 ENSG00000267069.1 lincRNA AP005264.1 2 OTTHUMG00000180722.1 +31474 chr18 ENSEMBL gene 12304091 12304194 104.0 - 0 ENSG00000199702.1 snRNA RNU6-170P 3 +31475 chr18 HAVANA gene 12307669 12344320 4117.0 + 0 ENSG00000176014.12 protein_coding TUBB6 1 OTTHUMG00000131692.3 +31476 chr18 HAVANA gene 12328944 12377314 6624.0 - 0 ENSG00000141385.9 protein_coding AFG3L2 2 OTTHUMG00000131695.3 +31477 chr18 ENSEMBL gene 12400412 12400473 62.0 + 0 ENSG00000251937.1 snRNA RNU7-129P 3 +31478 chr18 HAVANA gene 12407896 12432238 2643.0 + 0 ENSG00000141391.13 protein_coding PRELID3A 2 OTTHUMG00000131694.3 +31479 chr18 HAVANA gene 12432897 12437635 168.0 + 0 ENSG00000267108.1 lincRNA AP001029.1 2 OTTHUMG00000180775.1 +31480 chr18 HAVANA gene 12438890 12448205 5428.0 + 0 ENSG00000267199.1 antisense AP001029.2 2 OTTHUMG00000180776.1 +31481 chr18 HAVANA gene 12450447 12451042 596.0 + 0 ENSG00000267515.1 processed_pseudogene AP001029.3 1 OTTHUMG00000180820.1 pseudo_consens +31482 chr18 HAVANA gene 12446512 12658134 6532.0 - 0 ENSG00000134278.15 protein_coding SPIRE1 2 OTTHUMG00000153940.4 +31483 chr18 HAVANA gene 12670426 12671145 720.0 - 0 ENSG00000267249.1 sense_intronic AP005482.3 2 OTTHUMG00000180892.1 overlapping_locus +31484 chr18 HAVANA gene 12661833 12702777 6158.0 - 0 ENSG00000101624.10 protein_coding CEP76 1 OTTHUMG00000131701.3 overlapping_locus +31485 chr18 HAVANA gene 12658043 12725740 3356.0 + 0 ENSG00000128789.20 protein_coding PSMG2 2 OTTHUMG00000131703.4 overlapping_locus +31486 chr18 HAVANA gene 12738965 12750068 310.0 - 0 ENSG00000266961.1 lincRNA AP005482.2 2 OTTHUMG00000180893.1 overlapping_locus +31487 chr18 ENSEMBL gene 12760717 12760818 102.0 + 0 ENSG00000201466.1 misc_RNA RF00019 3 +31488 chr18 HAVANA gene 12739490 12776137 2347.0 - 0 ENSG00000260302.2 lincRNA AP005482.1 2 OTTHUMG00000180894.2 +31489 chr18 HAVANA gene 12911186 12912023 838.0 + 0 ENSG00000267570.1 processed_pseudogene STK25P1 1 OTTHUMG00000181907.1 pseudo_consens +31490 chr18 HAVANA gene 12912844 12913906 1063.0 + 0 ENSG00000267336.1 processed_pseudogene EIF4A2P1 1 OTTHUMG00000181908.1 pseudo_consens +31491 chr18 HAVANA gene 12785478 12929643 6921.0 - 0 ENSG00000175354.19 protein_coding PTPN2 1 OTTHUMG00000131702.5 +31492 chr18 HAVANA gene 12947133 12987536 10481.0 + 0 ENSG00000085415.15 protein_coding SEH1L 2 OTTHUMG00000181909.2 +31493 chr18 HAVANA gene 12984694 12991173 474.0 - 0 ENSG00000266969.1 antisense AP002449.1 2 OTTHUMG00000181910.1 +31494 chr18 HAVANA gene 12991362 13125052 9901.0 + 0 ENSG00000101639.18 protein_coding CEP192 2 OTTHUMG00000160693.4 +31495 chr18 HAVANA gene 13139780 13140489 710.0 - 0 ENSG00000267656.1 processed_pseudogene AP001357.2 1 OTTHUMG00000181947.1 pseudo_consens +31496 chr18 HAVANA gene 13151637 13152689 1053.0 - 0 ENSG00000267032.1 processed_pseudogene AP001357.1 1 OTTHUMG00000181948.1 pseudo_consens +31497 chr18 HAVANA gene 13183402 13185617 466.0 - 0 ENSG00000267286.1 lincRNA AP001198.2 2 OTTHUMG00000181949.1 +31498 chr18 HAVANA gene 13203774 13216367 2086.0 - 0 ENSG00000267239.1 antisense AP001198.1 2 OTTHUMG00000181950.1 +31499 chr18 HAVANA gene 13234945 13236470 228.0 - 0 ENSG00000267177.1 antisense AP002505.1 2 OTTHUMG00000181951.1 +31500 chr18 HAVANA gene 13239543 13242076 2534.0 + 0 ENSG00000279020.1 TEC C18orf15 2 OTTHUMG00000181926.1 overlapping_locus +31501 chr18 HAVANA gene 13279415 13280110 696.0 - 0 ENSG00000279275.1 TEC AP002505.2 2 OTTHUMG00000181927.1 +31502 chr18 HAVANA gene 13362203 13366243 480.0 - 0 ENSG00000267393.1 antisense AP002439.1 2 OTTHUMG00000181928.1 +31503 chr18 HAVANA gene 13419421 13427480 2190.0 - 0 ENSG00000267690.1 antisense LDLRAD4-AS1 2 OTTHUMG00000181929.1 +31504 chr18 ENSEMBL gene 13459947 13460026 80.0 + 0 ENSG00000266146.1 miRNA MIR5190 3 +31505 chr18 HAVANA gene 13461020 13470823 498.0 - 0 ENSG00000267694.1 antisense AP005131.5 2 OTTHUMG00000181955.1 +31506 chr18 HAVANA gene 13471012 13472709 1698.0 - 0 ENSG00000267529.3 processed_transcript AP005131.4 2 OTTHUMG00000181931.2 +31507 chr18 HAVANA gene 13486462 13490676 4215.0 + 0 ENSG00000267702.1 sense_intronic AP005131.6 2 OTTHUMG00000181932.1 overlapping_locus +31508 chr18 HAVANA gene 13500641 13501289 487.0 - 0 ENSG00000267366.1 antisense AP005131.2 2 OTTHUMG00000181956.1 +31509 chr18 HAVANA gene 13514520 13522888 4745.0 - 0 ENSG00000267136.1 antisense AP005131.1 2 OTTHUMG00000181933.1 +31510 chr18 HAVANA gene 13526078 13526688 611.0 + 0 ENSG00000272746.1 sense_intronic AP005131.7 2 OTTHUMG00000186233.1 overlapping_locus +31511 chr18 HAVANA gene 13561399 13565035 665.0 - 0 ENSG00000267503.1 antisense AP005131.3 2 OTTHUMG00000181952.1 +31512 chr18 ENSEMBL gene 13611114 13611200 87.0 + 0 ENSG00000263527.1 miRNA MIR4526 3 +31513 chr18 HAVANA gene 13644815 13645685 538.0 - 0 ENSG00000266954.1 antisense AP001010.1 2 OTTHUMG00000181935.1 +31514 chr18 HAVANA gene 13217498 13652755 16759.0 + 0 ENSG00000168675.18 protein_coding LDLRAD4 1 OTTHUMG00000181925.5 ncRNA_host,overlapping_locus +31515 chr18 HAVANA gene 13710249 13710484 236.0 - 0 ENSG00000279962.1 TEC AP001525.1 2 OTTHUMG00000181953.1 overlapping_locus +31516 chr18 ENSEMBL gene 13715102 13715368 267.0 - 0 ENSG00000242707.3 misc_RNA RN7SL362P 3 +31517 chr18 HAVANA gene 13663347 13726663 4681.0 - 0 ENSG00000177150.12 protein_coding FAM210A 2 OTTHUMG00000131719.3 ncRNA_host,overlapping_locus +31518 chr18 HAVANA gene 13726660 13764558 6982.0 + 0 ENSG00000101654.17 protein_coding RNMT 2 OTTHUMG00000131718.5 +31519 chr18 HAVANA gene 13824149 13827323 1906.0 + 0 ENSG00000176136.6 protein_coding MC5R 2 OTTHUMG00000131720.5 +31520 chr18 HAVANA gene 13882044 13915707 3734.0 - 0 ENSG00000185231.4 protein_coding MC2R 2 OTTHUMG00000131721.4 +31521 chr18 HAVANA gene 13919603 13919923 321.0 - 0 ENSG00000243779.1 processed_pseudogene AP001086.1 1 OTTHUMG00000158167.1 pseudo_consens +31522 chr18 HAVANA gene 14010054 14010917 864.0 + 0 ENSG00000279352.1 TEC AC006557.6 2 OTTHUMG00000182054.1 +31523 chr18 HAVANA gene 14053951 14054761 811.0 + 0 ENSG00000270469.1 processed_pseudogene AC006557.5 1 OTTHUMG00000184865.1 pseudo_consens +31524 chr18 HAVANA gene 14074912 14075741 830.0 - 0 ENSG00000267756.1 unprocessed_pseudogene AC006557.4 2 OTTHUMG00000182056.1 overlapping_locus +31525 chr18 HAVANA gene 14089935 14091019 1085.0 + 0 ENSG00000267150.1 antisense AC006557.1 2 OTTHUMG00000182057.1 +31526 chr18 HAVANA gene 14104542 14105226 517.0 + 0 ENSG00000267356.1 antisense AC006557.3 2 OTTHUMG00000182058.1 +31527 chr18 HAVANA gene 14057457 14132490 15787.0 - 0 ENSG00000175322.11 protein_coding ZNF519 1 OTTHUMG00000182055.2 overlapping_locus +31528 chr18 HAVANA gene 14137710 14139272 1563.0 + 0 ENSG00000267704.1 processed_pseudogene FRG2LP 2 OTTHUMG00000182059.1 +31529 chr18 HAVANA gene 14143596 14151139 1240.0 - 0 ENSG00000267324.1 processed_pseudogene AC006557.2 2 OTTHUMG00000182060.1 +31530 chr18 HAVANA gene 14153001 14157342 448.0 - 0 ENSG00000175319.3 processed_pseudogene NF1P5 2 OTTHUMG00000182061.1 +31531 chr18 ENSEMBL gene 14190700 14190806 107.0 + 0 ENSG00000212329.1 snRNA RNU6-316P 3 +31532 chr18 HAVANA gene 14222008 14222331 324.0 + 0 ENSG00000266145.1 processed_pseudogene RHOT1P1 1 OTTHUMG00000178664.1 pseudo_consens,overlapping_locus +31533 chr18 HAVANA gene 14179097 14252140 6302.0 + 0 ENSG00000186481.16 transcribed_unprocessed_pseudogene ANKRD20A5P 1 OTTHUMG00000191817.1 pseudo_consens,overlapping_locus +31534 chr18 HAVANA gene 14253548 14254075 528.0 + 0 ENSG00000274214.1 processed_pseudogene AP005212.2 1 OTTHUMG00000187931.1 pseudo_consens +31535 chr18 HAVANA gene 14225224 14342505 3505.0 + 0 ENSG00000283294.1 processed_transcript AP005212.4 2 OTTHUMG00000157172.5 overlapping_locus +31536 chr18 HAVANA gene 14337423 14342524 2876.0 + 0 ENSG00000265787.2 transcribed_unprocessed_pseudogene CYP4F35P 2 OTTHUMG00000178670.2 overlapping_locus +31537 chr18 HAVANA gene 14346214 14346923 710.0 - 0 ENSG00000277743.1 processed_pseudogene AP005212.3 2 OTTHUMG00000187932.1 +31538 chr18 HAVANA gene 14361434 14361943 510.0 - 0 ENSG00000265437.1 processed_pseudogene AP005212.1 1 OTTHUMG00000178676.1 pseudo_consens +31539 chr18 HAVANA gene 14377546 14378757 1212.0 - 0 ENSG00000187589.8 processed_pseudogene TERF1P2 1 OTTHUMG00000178678.1 pseudo_consens +31540 chr18 HAVANA gene 14391913 14393909 1997.0 - 0 ENSG00000265296.1 processed_pseudogene FEM1AP2 1 OTTHUMG00000178677.1 pseudo_consens +31541 chr18 HAVANA gene 14450216 14450883 668.0 - 0 ENSG00000266605.1 processed_pseudogene LONRF2P1 2 OTTHUMG00000178699.1 +31542 chr18 HAVANA gene 14485806 14487501 1232.0 + 0 ENSG00000266242.1 processed_pseudogene GRAMD4P7 1 OTTHUMG00000178701.1 pseudo_consens +31543 chr18 HAVANA gene 14477955 14499278 1955.0 - 0 ENSG00000265766.3 transcribed_processed_pseudogene CXADRP3 2 OTTHUMG00000178700.2 +31544 chr18 ENSEMBL gene 14531676 14531782 107.0 - 0 ENSG00000200132.1 snRNA RNU6-1021P 3 +31545 chr18 HAVANA gene 14507339 14543585 7118.0 - 0 ENSG00000183206.17 protein_coding POTEC 2 OTTHUMG00000162963.4 ncRNA_host +31546 chr18 HAVANA gene 14570844 14571788 945.0 + 0 ENSG00000265340.1 unprocessed_pseudogene OR4K7P 2 OTTHUMG00000178702.1 +31547 chr18 HAVANA gene 14613137 14614184 1048.0 + 0 ENSG00000266693.1 unprocessed_pseudogene OR4K8P 2 OTTHUMG00000178703.1 +31548 chr18 HAVANA gene 14629832 14632806 2975.0 - 0 ENSG00000264570.1 processed_pseudogene SNX19P3 1 OTTHUMG00000178704.1 pseudo_consens +31549 chr18 HAVANA gene 14680604 14681106 503.0 - 0 ENSG00000273732.1 unprocessed_pseudogene VN1R74P 2 OTTHUMG00000188031.1 +31550 chr18 HAVANA gene 14695422 14706597 584.0 + 0 ENSG00000276318.1 unprocessed_pseudogene GTF2IP8 2 OTTHUMG00000187942.1 +31551 chr18 ENSEMBL gene 14759188 14759294 107.0 + 0 ENSG00000200645.1 snRNA RNU6-1210P 3 +31552 chr18 HAVANA gene 14816151 14825249 586.0 - 0 ENSG00000265737.1 antisense AP006565.1 2 OTTHUMG00000178842.1 +31553 chr18 ENSEMBL gene 14830166 14830242 77.0 + 0 ENSG00000265499.1 miRNA MIR3156-2 3 +31554 chr18 HAVANA gene 14728272 14852738 5982.0 + 0 ENSG00000180777.13 protein_coding ANKRD30B 2 OTTHUMG00000178841.2 ncRNA_host +31555 chr18 HAVANA gene 14877611 14884052 499.0 + 0 ENSG00000265786.1 lincRNA LINC01906 2 OTTHUMG00000178808.1 +31556 chr18 HAVANA gene 14888709 14890086 288.0 - 0 ENSG00000264061.1 unprocessed_pseudogene FGF7P1 2 OTTHUMG00000178809.1 +31557 chr18 HAVANA gene 14903580 14915628 916.0 + 0 ENSG00000263618.5 lincRNA AP005121.1 2 OTTHUMG00000178810.1 +31558 chr18 HAVANA gene 14969001 14970468 1336.0 - 0 ENSG00000264301.1 lincRNA LINC01444 2 OTTHUMG00000178812.1 +31559 chr18 HAVANA gene 14946267 14974215 2842.0 + 0 ENSG00000266554.2 lincRNA LINC01443 2 OTTHUMG00000178811.2 +31560 chr18 HAVANA gene 14978739 14979839 1101.0 + 0 ENSG00000263821.1 lincRNA AP005121.2 2 OTTHUMG00000178813.1 +31561 chr18 HAVANA gene 14990707 14993235 2529.0 - 0 ENSG00000279042.1 TEC AP005242.4 2 OTTHUMG00000178814.1 +31562 chr18 HAVANA gene 15003975 15006352 1175.0 - 0 ENSG00000266522.1 unprocessed_pseudogene AP005242.2 2 OTTHUMG00000178815.1 +31563 chr18 HAVANA gene 15056845 15066598 607.0 - 0 ENSG00000278923.2 lincRNA AP005242.3 2 OTTHUMG00000192083.1 +31564 chr18 HAVANA gene 15075445 15122767 467.0 + 0 ENSG00000263635.1 lincRNA AP005242.1 2 OTTHUMG00000178816.1 +31565 chr18 HAVANA gene 15159724 15164467 525.0 - 0 ENSG00000264880.1 lincRNA AP005901.2 2 OTTHUMG00000178817.1 +31566 chr18 HAVANA gene 15196999 15197775 467.0 - 0 ENSG00000265015.1 transcribed_processed_pseudogene AP005901.3 2 OTTHUMG00000178818.1 +31567 chr18 HAVANA gene 15247429 15247997 569.0 - 0 ENSG00000265631.1 processed_pseudogene BNIP3P3 1 OTTHUMG00000178819.1 pseudo_consens +31568 chr18 HAVANA gene 15254418 15271744 1796.0 + 0 ENSG00000266818.1 unprocessed_pseudogene AP005901.4 2 OTTHUMG00000178820.1 +31569 chr18 ENSEMBL gene 15320840 15320944 105.0 - 0 ENSG00000222087.1 snRNA RNU6-721P 3 +31570 chr18 HAVANA gene 15307663 15330282 2970.0 - 0 ENSG00000215512.9 transcribed_unprocessed_pseudogene AP005901.1 1 OTTHUMG00000163472.1 pseudo_consens +31571 chr18 HAVANA gene 20946906 21111851 11113.0 - 0 ENSG00000067900.7 protein_coding ROCK1 2 OTTHUMG00000131723.4 +31572 chr18 HAVANA gene 21119182 21119661 480.0 - 0 ENSG00000244527.1 processed_pseudogene AC022795.1 1 OTTHUMG00000158172.1 pseudo_consens +31573 chr18 ENSEMBL gene 21120404 21120506 103.0 - 0 ENSG00000251886.1 snRNA RNU6-120P 3 +31574 chr18 HAVANA gene 21182503 21183499 997.0 - 0 ENSG00000263748.1 processed_pseudogene EXOGP1 1 OTTHUMG00000178591.1 pseudo_consens +31575 chr18 HAVANA gene 21240675 21241371 428.0 - 0 ENSG00000265984.1 lincRNA AC022809.1 1 OTTHUMG00000178592.1 +31576 chr18 HAVANA gene 21316878 21317795 361.0 + 0 ENSG00000265948.1 sense_intronic AC015878.2 2 OTTHUMG00000178918.1 overlapping_locus +31577 chr18 ENSEMBL gene 21450653 21450756 104.0 - 0 ENSG00000221139.1 snoRNA RF00603 3 +31578 chr18 HAVANA gene 21380286 21451017 679.0 - 0 ENSG00000265751.1 antisense AC015878.1 2 OTTHUMG00000178893.1 ncRNA_host +31579 chr18 HAVANA gene 21242242 21525417 10572.0 + 0 ENSG00000141449.14 protein_coding GREB1L 1 OTTHUMG00000178892.3 overlapping_locus +31580 chr18 HAVANA gene 21529281 21600884 5288.0 - 0 ENSG00000141446.10 protein_coding ESCO1 2 OTTHUMG00000178919.1 +31581 chr18 HAVANA gene 21612267 21633524 4909.0 + 0 ENSG00000167088.10 protein_coding SNRPD1 1 OTTHUMG00000178934.3 overlapping_locus +31582 chr18 HAVANA gene 21661787 21662395 336.0 - 0 ENSG00000264188.1 sense_intronic AC106037.1 2 OTTHUMG00000179282.1 overlapping_locus +31583 chr18 HAVANA gene 21673628 21682561 447.0 + 0 ENSG00000265656.1 antisense AC106037.2 2 OTTHUMG00000179283.1 +31584 chr18 ENSEMBL gene 21683510 21683597 88.0 + 0 ENSG00000221493.1 miRNA MIR320C1 3 +31585 chr18 HAVANA gene 21650897 21704805 4366.0 - 0 ENSG00000158201.9 protein_coding ABHD3 1 OTTHUMG00000179099.2 overlapping_locus +31586 chr18 ENSEMBL gene 21711950 21712119 170.0 - 0 ENSG00000252677.1 snoRNA RF01241 3 +31587 chr18 ENSEMBL gene 21724119 21724229 111.0 + 0 ENSG00000200750.1 misc_RNA RF00019 3 +31588 chr18 ENSEMBL gene 21793883 21794159 277.0 + 0 ENSG00000242971.3 misc_RNA RN7SL233P 3 +31589 chr18 ENSEMBL gene 21817624 21817828 205.0 + 0 ENSG00000199977.1 snoRNA RF00045 3 +31590 chr18 ENSEMBL gene 21825698 21825785 88.0 - 0 ENSG00000283927.1 miRNA MIR133A1 3 +31591 chr18 ENSEMBL gene 21829004 21829088 85.0 - 0 ENSG00000284453.1 miRNA MIR1-2 3 +31592 chr18 HAVANA gene 21825487 21831410 4376.0 - 0 ENSG00000265142.8 antisense MIR133A1HG 2 OTTHUMG00000179284.1 ncRNA_host +31593 chr18 HAVANA gene 21854640 21854987 348.0 - 0 ENSG00000243303.1 processed_pseudogene AC103987.1 1 OTTHUMG00000158174.1 pseudo_consens +31594 chr18 HAVANA gene 21704957 21870957 10033.0 + 0 ENSG00000101752.11 protein_coding MIB1 2 OTTHUMG00000131753.3 ncRNA_host +31595 chr18 ENSEMBL gene 21879801 21879904 104.0 + 0 ENSG00000252325.1 snRNA RNU6-1038P 3 +31596 chr18 HAVANA gene 21871446 21893996 417.0 - 0 ENSG00000264149.1 lincRNA AC103987.2 2 OTTHUMG00000179285.1 +31597 chr18 HAVANA gene 21914369 21914660 292.0 - 0 ENSG00000264289.1 processed_pseudogene AC103987.3 2 OTTHUMG00000179286.1 +31598 chr18 ENSEMBL gene 21928985 21929094 110.0 - 0 ENSG00000222520.1 rRNA_pseudogene RNA5SP451 3 +31599 chr18 HAVANA gene 21981121 22051159 955.0 + 0 ENSG00000265758.1 lincRNA LINC01900 2 OTTHUMG00000179438.1 +31600 chr18 HAVANA gene 22088060 22098780 453.0 + 0 ENSG00000263588.1 lincRNA AC091043.1 2 OTTHUMG00000179439.1 +31601 chr18 ENSEMBL gene 22130603 22130729 127.0 - 0 ENSG00000221363.1 snRNA RNU6ATAC20P 3 +31602 chr18 HAVANA gene 22164886 22169878 3173.0 - 0 ENSG00000266010.2 antisense GATA6-AS1 2 OTTHUMG00000179440.2 +31603 chr18 HAVANA gene 22175465 22176662 359.0 - 0 ENSG00000264012.1 antisense AC091588.1 2 OTTHUMG00000179441.1 +31604 chr18 ENSEMBL gene 22180112 22180218 107.0 - 0 ENSG00000201852.1 snRNA RNU6-702P 3 +31605 chr18 HAVANA gene 22169443 22202528 3945.0 + 0 ENSG00000141448.8 protein_coding GATA6 2 OTTHUMG00000131767.2 +31606 chr18 HAVANA gene 22200619 22205229 770.0 - 0 ENSG00000266283.1 antisense AC091588.3 2 OTTHUMG00000179442.1 +31607 chr18 HAVANA gene 22213778 22228029 366.0 + 0 ENSG00000264825.1 lincRNA AC091588.2 2 OTTHUMG00000179443.1 +31608 chr18 HAVANA gene 22347846 22348252 407.0 - 0 ENSG00000273348.1 lincRNA AC027449.1 2 OTTHUMG00000186239.1 +31609 chr18 HAVANA gene 22413601 22417915 4315.0 - 0 ENSG00000212710.4 protein_coding CTAGE1 2 OTTHUMG00000165867.3 retrogene +31610 chr18 HAVANA gene 22418829 22419294 466.0 - 0 ENSG00000270855.1 processed_pseudogene AC099849.1 1 OTTHUMG00000185042.1 pseudo_consens +31611 chr18 HAVANA gene 22586465 22587227 763.0 + 0 ENSG00000239490.1 processed_pseudogene RPS4XP18 1 OTTHUMG00000158176.3 pseudo_consens +31612 chr18 ENSEMBL gene 22647582 22647688 107.0 + 0 ENSG00000206827.1 snRNA RNU6-1032P 3 +31613 chr18 HAVANA gene 22882825 22883357 533.0 - 0 ENSG00000273232.1 sense_intronic AC090912.3 2 OTTHUMG00000186240.1 overlapping_locus +31614 chr18 HAVANA gene 22900486 22900995 510.0 - 0 ENSG00000265939.1 processed_pseudogene UBE2CP2 1 OTTHUMG00000179444.1 pseudo_consens,overlapping_locus +31615 chr18 HAVANA gene 22723491 22907721 1229.0 - 0 ENSG00000266850.1 antisense AC090912.2 2 OTTHUMG00000179448.1 overlapping_locus +31616 chr18 ENSEMBL gene 22933349 22933438 90.0 + 0 ENSG00000284331.1 miRNA MIR4741 3 +31617 chr18 HAVANA gene 22699481 22933764 570.0 - 0 ENSG00000265943.1 antisense AC090912.1 2 OTTHUMG00000179447.1 overlapping_locus +31618 chr18 ENSEMBL gene 23004564 23004862 299.0 + 0 ENSG00000242182.3 misc_RNA RN7SL745P 3 +31619 chr18 ENSEMBL gene 23024596 23024703 108.0 + 0 ENSG00000223023.1 misc_RNA RF00019 3 +31620 chr18 HAVANA gene 22798261 23026488 5091.0 + 0 ENSG00000101773.18 protein_coding RBBP8 1 OTTHUMG00000131769.6 ncRNA_host +31621 chr18 HAVANA gene 23257164 23260354 389.0 - 0 ENSG00000266495.1 antisense AC011731.1 2 OTTHUMG00000179210.1 overlapping_locus +31622 chr18 HAVANA gene 23134564 23260467 6654.0 + 0 ENSG00000134508.12 protein_coding CABLES1 2 OTTHUMG00000179186.5 +31623 chr18 HAVANA gene 23197144 23437961 5193.0 - 0 ENSG00000134490.13 protein_coding TMEM241 2 OTTHUMG00000131771.7 overlapping_locus +31624 chr18 ENSEMBL gene 23456371 23456467 97.0 + 0 ENSG00000199357.1 misc_RNA RF00019 3 +31625 chr18 HAVANA gene 23485000 23485197 198.0 + 0 ENSG00000283084.1 processed_pseudogene AC026634.1 2 OTTHUMG00000191505.1 overlapping_locus +31626 chr18 HAVANA gene 23452823 23486603 5320.0 + 0 ENSG00000101782.14 protein_coding RIOK3 1 OTTHUMG00000131813.5 ncRNA_host,overlapping_locus +31627 chr18 HAVANA gene 23503470 23531807 3090.0 + 0 ENSG00000141452.9 protein_coding RMC1 1 OTTHUMG00000179239.4 +31628 chr18 ENSEMBL gene 23582016 23582121 106.0 - 0 ENSG00000199366.1 misc_RNA RF00019 3 +31629 chr18 HAVANA gene 23506184 23586898 10102.0 - 0 ENSG00000141458.12 protein_coding NPC1 1 OTTHUMG00000131873.9 ncRNA_host +31630 chr18 HAVANA gene 23598926 23662885 6391.0 - 0 ENSG00000154065.16 protein_coding ANKRD29 2 OTTHUMG00000131875.5 +31631 chr18 HAVANA gene 23672253 23672748 496.0 - 0 ENSG00000267752.1 processed_pseudogene RPS10P27 1 OTTHUMG00000158182.2 pseudo_consens +31632 chr18 HAVANA gene 23709825 23710287 463.0 - 0 ENSG00000267301.1 processed_pseudogene RPL23AP77 1 OTTHUMG00000158183.2 pseudo_consens +31633 chr18 HAVANA gene 23689443 23956222 14678.0 + 0 ENSG00000053747.16 protein_coding LAMA3 1 OTTHUMG00000131874.11 +31634 chr18 HAVANA gene 23957754 23982556 1061.0 - 0 ENSG00000265752.2 lincRNA AC010754.1 2 OTTHUMG00000179402.2 +31635 chr18 HAVANA gene 23994213 24015339 817.0 - 0 ENSG00000264745.1 antisense TTC39C-AS1 2 OTTHUMG00000179404.1 +31636 chr18 HAVANA gene 24076794 24099320 564.0 - 0 ENSG00000265204.1 antisense AC090772.2 2 OTTHUMG00000179405.1 +31637 chr18 HAVANA gene 24113637 24121003 507.0 - 0 ENSG00000264924.1 antisense AC090772.1 2 OTTHUMG00000179406.1 +31638 chr18 ENSEMBL gene 24124170 24124285 116.0 - 0 ENSG00000206863.1 snRNA RNU5A-6P 3 +31639 chr18 HAVANA gene 23992773 24135610 7188.0 + 0 ENSG00000168234.12 protein_coding TTC39C 1 OTTHUMG00000179403.5 +31640 chr18 HAVANA gene 24135468 24135829 362.0 - 0 ENSG00000279332.1 TEC AC090772.4 2 OTTHUMG00000177522.2 +31641 chr18 HAVANA gene 24138956 24161603 3518.0 + 0 ENSG00000154040.20 protein_coding CABYR 2 OTTHUMG00000037365.11 +31642 chr18 HAVANA gene 24159509 24162211 735.0 - 0 ENSG00000265750.1 lincRNA AC090772.3 2 OTTHUMG00000190257.1 overlapping_locus +31643 chr18 ENSEMBL gene 24170505 24170623 119.0 - 0 ENSG00000199874.1 rRNA_pseudogene RNA5SP452 3 +31644 chr18 ENSEMBL gene 24179038 24179295 258.0 - 0 ENSG00000273524.1 misc_RNA RF00017 3 +31645 chr18 ENSEMBL gene 24218300 24218404 105.0 + 0 ENSG00000206766.1 snRNA RNU6-435P 3 +31646 chr18 ENSEMBL gene 24321686 24321735 50.0 + 0 ENSG00000212051.1 miRNA MIR320C2 3 +31647 chr18 HAVANA gene 24364787 24367984 567.0 + 0 ENSG00000264365.1 antisense AC023983.1 2 OTTHUMG00000179461.1 +31648 chr18 HAVANA gene 24162044 24397880 8030.0 - 0 ENSG00000141447.17 protein_coding OSBPL1A 1 OTTHUMG00000131944.6 ncRNA_host,overlapping_locus +31649 chr18 HAVANA gene 24402153 24402714 562.0 + 0 ENSG00000273321.1 lincRNA AC023983.2 2 OTTHUMG00000186241.1 +31650 chr18 ENSEMBL gene 24429505 24429609 105.0 + 0 ENSG00000199636.1 misc_RNA RF00019 3 +31651 chr18 HAVANA gene 24435364 24439638 281.0 + 0 ENSG00000265094.1 sense_intronic AC007922.2 2 OTTHUMG00000179477.1 overlapping_locus +31652 chr18 HAVANA gene 24426616 24453535 4918.0 + 0 ENSG00000154059.10 protein_coding IMPACT 2 OTTHUMG00000131943.6 ncRNA_host,overlapping_locus +31653 chr18 HAVANA gene 24460629 24479957 3668.0 + 0 ENSG00000134489.6 protein_coding HRH4 2 OTTHUMG00000131945.3 +31654 chr18 HAVANA gene 24489375 24491080 459.0 + 0 ENSG00000264695.1 lincRNA AC007922.1 2 OTTHUMG00000179488.1 +31655 chr18 HAVANA gene 24522273 24522919 647.0 - 0 ENSG00000266181.1 processed_pseudogene EIF4A3P1 1 OTTHUMG00000179490.1 pseudo_consens +31656 chr18 HAVANA gene 24516699 24542023 2119.0 - 0 ENSG00000266489.2 lincRNA AC007922.3 2 OTTHUMG00000179489.3 +31657 chr18 HAVANA gene 24685772 24686351 580.0 - 0 ENSG00000266520.1 processed_pseudogene RAC1P1 1 OTTHUMG00000179504.1 pseudo_consens +31658 chr18 HAVANA gene 24689914 24690161 248.0 - 0 ENSG00000266809.1 processed_pseudogene PPIAP57 1 OTTHUMG00000179505.1 pseudo_consens +31659 chr18 HAVANA gene 24628182 24708542 6350.0 + 0 ENSG00000265485.6 lincRNA LINC01915 2 OTTHUMG00000179501.1 +31660 chr18 HAVANA gene 24725781 24929076 908.0 + 0 ENSG00000266573.5 lincRNA AC018697.1 2 OTTHUMG00000179506.1 +31661 chr18 HAVANA gene 24933487 24987682 564.0 - 0 ENSG00000264345.1 lincRNA LINC01894 2 OTTHUMG00000179507.1 +31662 chr18 HAVANA gene 25016434 25017204 771.0 - 0 ENSG00000229248.1 processed_pseudogene WBP2P1 1 OTTHUMG00000179508.1 pseudo_consens +31663 chr18 HAVANA gene 25055600 25056760 663.0 + 0 ENSG00000265552.1 lincRNA AC104961.1 2 OTTHUMG00000179509.1 +31664 chr18 HAVANA gene 25200976 25202837 1862.0 - 0 ENSG00000279439.1 TEC AC105114.1 2 OTTHUMG00000179534.1 overlapping_locus +31665 chr18 HAVANA gene 25196663 25218241 2037.0 + 0 ENSG00000285595.1 antisense AC105114.2 2 OTTHUMG00000192703.1 +31666 chr18 HAVANA gene 25302126 25302960 468.0 + 0 ENSG00000264434.2 antisense AC110603.1 2 OTTHUMG00000179535.3 +31667 chr18 HAVANA gene 25061926 25352190 6223.0 - 0 ENSG00000198795.10 protein_coding ZNF521 2 OTTHUMG00000179511.3 overlapping_locus +31668 chr18 ENSEMBL gene 25818234 25818532 299.0 - 0 ENSG00000242216.3 misc_RNA RN7SL97P 3 +31669 chr18 HAVANA gene 25953216 25953468 253.0 - 0 ENSG00000264193.1 processed_pseudogene AC027229.1 2 OTTHUMG00000179446.1 +31670 chr18 HAVANA gene 26016253 26091217 6144.0 - 0 ENSG00000141380.13 protein_coding SS18 2 OTTHUMG00000179425.3 +31671 chr18 HAVANA gene 26098839 26099226 388.0 + 0 ENSG00000243925.1 processed_pseudogene RPS24P18 1 OTTHUMG00000158184.1 pseudo_consens +31672 chr18 HAVANA gene 26170726 26171284 559.0 - 0 ENSG00000188985.6 processed_pseudogene DHFRP1 2 OTTHUMG00000179427.2 +31673 chr18 HAVANA gene 26133852 26193355 1894.0 + 0 ENSG00000154611.14 protein_coding PSMA8 2 OTTHUMG00000179426.1 +31674 chr18 HAVANA gene 26204869 26205904 867.0 + 0 ENSG00000266227.1 processed_pseudogene NPM1P2 1 OTTHUMG00000179428.2 pseudo_consens +31675 chr18 HAVANA gene 26255698 26256355 658.0 - 0 ENSG00000263829.1 processed_pseudogene SINHCAFP1 1 OTTHUMG00000179430.1 pseudo_consens +31676 chr18 HAVANA gene 26266009 26267409 839.0 + 0 ENSG00000266237.1 sense_intronic AC121320.1 2 OTTHUMG00000179431.1 overlapping_locus +31677 chr18 HAVANA gene 26348347 26349004 658.0 + 0 ENSG00000264911.1 processed_pseudogene AC022069.1 2 OTTHUMG00000179432.1 overlapping_locus +31678 chr18 ENSEMBL gene 26366301 26366406 106.0 - 0 ENSG00000207160.1 snRNA RNU6-1289P 3 +31679 chr18 HAVANA gene 26225936 26391685 5395.0 + 0 ENSG00000141384.12 protein_coding TAF4B 1 OTTHUMG00000179429.3 overlapping_locus +31680 chr18 HAVANA gene 26422995 26426101 900.0 + 0 ENSG00000263862.1 lincRNA LINC01543 2 OTTHUMG00000179433.1 +31681 chr18 HAVANA gene 26542971 26545791 2821.0 - 0 ENSG00000277534.1 sense_intronic AC007996.1 2 OTTHUMG00000186526.1 overlapping_locus +31682 chr18 HAVANA gene 26565723 26575626 1678.0 - 0 ENSG00000275805.1 sense_intronic AC090206.1 2 OTTHUMG00000186527.1 overlapping_locus +31683 chr18 ENSEMBL gene 26591467 26591535 69.0 - 0 ENSG00000276221.1 miRNA MIR8057 3 +31684 chr18 HAVANA gene 26599408 26600338 931.0 + 0 ENSG00000263846.1 processed_pseudogene CIAPIN1P 1 OTTHUMG00000179434.1 pseudo_consens +31685 chr18 HAVANA gene 26454910 26657401 7410.0 - 0 ENSG00000134504.13 protein_coding KCTD1 2 OTTHUMG00000131947.6 ncRNA_host,overlapping_locus +31686 chr18 ENSEMBL gene 26689316 26689529 214.0 - 0 ENSG00000275900.1 snoRNA RF00012 3 +31687 chr18 HAVANA gene 26688111 26689668 358.0 + 0 ENSG00000263677.1 lincRNA AC012588.1 2 OTTHUMG00000179531.1 overlapping_locus +31688 chr18 HAVANA gene 26687621 26703638 2598.0 - 0 ENSG00000265369.3 lincRNA PCAT18 2 OTTHUMG00000179450.1 ncRNA_host +31689 chr18 HAVANA gene 26822813 26823979 640.0 - 0 ENSG00000263382.1 lincRNA AC018371.1 2 OTTHUMG00000179525.1 +31690 chr18 HAVANA gene 26831520 26832432 913.0 - 0 ENSG00000266184.1 processed_pseudogene AC018371.2 1 OTTHUMG00000179526.1 pseudo_consens +31691 chr18 HAVANA gene 26852038 26865818 5995.0 - 0 ENSG00000171885.14 protein_coding AQP4 2 OTTHUMG00000131955.7 +31692 chr18 HAVANA gene 26952201 26952558 358.0 - 0 ENSG00000266549.1 processed_pseudogene AC023575.1 1 OTTHUMG00000179527.1 pseudo_consens,overlapping_locus +31693 chr18 HAVANA gene 26906481 27185317 11521.0 - 0 ENSG00000154080.13 protein_coding CHST9 2 OTTHUMG00000179469.4 overlapping_locus +31694 chr18 HAVANA gene 26655742 27190698 6944.0 + 0 ENSG00000260372.6 antisense AQP4-AS1 2 OTTHUMG00000131954.6 overlapping_locus +31695 chr18 HAVANA gene 27225742 27247188 555.0 + 0 ENSG00000265374.1 lincRNA LINC01908 2 OTTHUMG00000179451.1 +31696 chr18 HAVANA gene 27343252 27346110 922.0 + 0 ENSG00000264790.1 lincRNA AC021382.1 2 OTTHUMG00000179582.1 +31697 chr18 HAVANA gene 27355406 27355764 359.0 - 0 ENSG00000244329.1 processed_pseudogene UBA52P9 1 OTTHUMG00000158402.2 pseudo_consens,overlapping_locus +31698 chr18 HAVANA gene 27397952 27401904 439.0 + 0 ENSG00000263611.1 lincRNA AC068408.1 2 OTTHUMG00000179583.1 +31699 chr18 HAVANA gene 27418884 27420435 1214.0 - 0 ENSG00000265097.1 processed_pseudogene RBM22P1 2 OTTHUMG00000179592.1 overlapping_locus +31700 chr18 HAVANA gene 27452514 27453657 1144.0 - 0 ENSG00000263405.1 processed_pseudogene PA2G4P3 1 OTTHUMG00000179591.1 pseudo_consens,overlapping_locus +31701 chr18 HAVANA gene 27336379 27595164 2557.0 - 0 ENSG00000264151.5 lincRNA AC090403.1 2 OTTHUMG00000179579.1 overlapping_locus +31702 chr18 HAVANA gene 27954519 27963687 440.0 + 0 ENSG00000227279.1 antisense AC110015.1 2 OTTHUMG00000064910.1 +31703 chr18 HAVANA gene 28146233 28146703 471.0 - 0 ENSG00000274578.1 sense_intronic AC006249.1 2 OTTHUMG00000186528.1 overlapping_locus +31704 chr18 HAVANA gene 27950966 28177446 4950.0 - 0 ENSG00000170558.8 protein_coding CDH2 1 OTTHUMG00000059940.11 overlapping_locus +31705 chr18 HAVANA gene 28651732 28653208 1477.0 + 0 ENSG00000266296.1 processed_pseudogene ARIH2P1 1 OTTHUMG00000179464.1 pseudo_consens +31706 chr18 HAVANA gene 28638714 28789580 965.0 + 0 ENSG00000265994.2 lincRNA AC090365.1 2 OTTHUMG00000179465.2 +31707 chr18 HAVANA gene 28824652 28824826 175.0 - 0 ENSG00000271238.1 processed_pseudogene AC023932.1 1 OTTHUMG00000185007.1 pseudo_consens +31708 chr18 ENSEMBL gene 29048620 29048719 100.0 + 0 ENSG00000251719.1 snRNA RNU6-408P 3 +31709 chr18 HAVANA gene 29256817 29257060 244.0 - 0 ENSG00000266479.1 processed_pseudogene AC105245.1 1 OTTHUMG00000179467.1 pseudo_consens +31710 chr18 HAVANA gene 29278509 29361963 471.0 - 0 ENSG00000265980.1 lincRNA AC074237.1 2 OTTHUMG00000179468.1 +31711 chr18 HAVANA gene 29518259 29548241 986.0 + 0 ENSG00000264587.5 lincRNA AC117569.1 2 OTTHUMG00000179470.1 +31712 chr18 ENSEMBL gene 30298910 30298960 51.0 + 0 ENSG00000283218.1 miRNA MIR302F 3 +31713 chr18 HAVANA gene 30713275 30714286 572.0 + 0 ENSG00000266196.1 lincRNA AC090506.1 2 OTTHUMG00000179471.1 +31714 chr18 HAVANA gene 30780006 30780424 419.0 + 0 ENSG00000279734.1 TEC AC090506.2 2 OTTHUMG00000179472.1 +31715 chr18 HAVANA gene 30954820 30980917 387.0 - 0 ENSG00000265670.1 lincRNA AC016382.1 2 OTTHUMG00000179621.1 +31716 chr18 ENSEMBL gene 30984106 30984215 110.0 + 0 ENSG00000251702.1 snRNA RNU6-857P 3 +31717 chr18 HAVANA gene 30990008 31042815 7056.0 - 0 ENSG00000134762.16 protein_coding DSC3 2 OTTHUMG00000179622.1 +31718 chr18 HAVANA gene 31058840 31102522 12495.0 - 0 ENSG00000134755.15 protein_coding DSC2 2 OTTHUMG00000131981.6 +31719 chr18 HAVANA gene 31131456 31132494 1039.0 + 0 ENSG00000263698.1 antisense AC012417.1 2 OTTHUMG00000179624.1 overlapping_locus +31720 chr18 HAVANA gene 31101588 31162789 553.0 + 0 ENSG00000265888.1 antisense DSCAS 2 OTTHUMG00000179623.1 overlapping_locus +31721 chr18 HAVANA gene 31129236 31162856 4271.0 - 0 ENSG00000134765.9 protein_coding DSC1 2 OTTHUMG00000131982.1 +31722 chr18 ENSEMBL gene 31345362 31345467 106.0 - 0 ENSG00000207019.1 snRNA RNU6-167P 3 +31723 chr18 HAVANA gene 31318089 31357029 5252.0 + 0 ENSG00000134760.5 protein_coding DSG1 2 OTTHUMG00000131983.4 +31724 chr18 ENSEMBL gene 31382317 31382430 114.0 + 0 ENSG00000207240.1 misc_RNA RF00019 3 +31725 chr18 HAVANA gene 31376777 31414912 4696.0 + 0 ENSG00000175065.11 protein_coding DSG4 2 OTTHUMG00000131979.2 ncRNA_host +31726 chr18 HAVANA gene 31343368 31426988 1149.0 - 0 ENSG00000266729.5 antisense DSG1-AS1 2 OTTHUMG00000179625.2 ncRNA_host +31727 chr18 HAVANA gene 31447795 31478702 5525.0 + 0 ENSG00000134757.4 protein_coding DSG3 2 OTTHUMG00000131985.3 +31728 chr18 HAVANA gene 31496645 31497195 433.0 - 0 ENSG00000266521.1 lincRNA AC021549.1 2 OTTHUMG00000179648.1 +31729 chr18 HAVANA gene 31498043 31549008 6190.0 + 0 ENSG00000046604.12 protein_coding DSG2 2 OTTHUMG00000179649.2 +31730 chr18 HAVANA gene 31542146 31556911 2024.0 - 0 ENSG00000264859.5 antisense DSG2-AS1 2 OTTHUMG00000179650.1 +31731 chr18 HAVANA gene 31557010 31599021 2395.0 + 0 ENSG00000118271.10 protein_coding TTR 2 OTTHUMG00000131984.4 +31732 chr18 HAVANA gene 31622247 31685836 5306.0 - 0 ENSG00000118276.11 protein_coding B4GALT6 1 OTTHUMG00000131980.4 +31733 chr18 HAVANA gene 31685655 31686823 1169.0 + 0 ENSG00000259985.1 antisense AC017100.1 2 OTTHUMG00000176154.1 +31734 chr18 ENSEMBL gene 31718893 31719208 316.0 + 0 ENSG00000200472.1 misc_RNA RN7SKP44 3 +31735 chr18 HAVANA gene 31726043 31726397 355.0 - 0 ENSG00000263772.1 processed_pseudogene AC017100.2 1 OTTHUMG00000179654.1 pseudo_consens +31736 chr18 HAVANA gene 31724198 31726956 2759.0 + 0 ENSG00000265158.1 transcribed_processed_pseudogene LRRC37A7P 2 OTTHUMG00000179653.1 +31737 chr18 HAVANA gene 31759562 31760880 1319.0 - 0 ENSG00000141437.8 protein_coding SLC25A52 2 OTTHUMG00000179617.2 +31738 chr18 HAVANA gene 31844388 31845178 348.0 + 0 ENSG00000263924.1 antisense AC022960.1 2 OTTHUMG00000179803.1 +31739 chr18 HAVANA gene 31883288 31883728 441.0 + 0 ENSG00000276486.1 processed_pseudogene AC022960.3 1 OTTHUMG00000187944.1 pseudo_consens +31740 chr18 HAVANA gene 31895745 31896410 666.0 - 0 ENSG00000276282.1 sense_intronic AC022960.2 2 OTTHUMG00000186531.1 overlapping_locus +31741 chr18 ENSEMBL gene 31937533 31937639 107.0 + 0 ENSG00000222320.1 snRNA RNU6-1050P 3 +31742 chr18 HAVANA gene 31942575 31944156 1582.0 + 0 ENSG00000263823.1 antisense AC009831.1 2 OTTHUMG00000179804.1 +31743 chr18 HAVANA gene 31829173 31953136 9214.0 - 0 ENSG00000153339.13 protein_coding TRAPPC8 1 OTTHUMG00000132267.8 overlapping_locus +31744 chr18 HAVANA gene 31962178 31963618 1441.0 + 0 ENSG00000265273.1 processed_pseudogene PGDP1 1 OTTHUMG00000179618.1 pseudo_consens +31745 chr18 HAVANA gene 31966960 31967545 586.0 + 0 ENSG00000266105.1 processed_pseudogene AC009831.2 1 OTTHUMG00000179619.1 pseudo_consens +31746 chr18 HAVANA gene 31982899 31986087 3189.0 + 0 ENSG00000280380.1 TEC AC009831.4 2 OTTHUMG00000179620.1 +31747 chr18 HAVANA gene 32031035 32031359 325.0 + 0 ENSG00000274275.1 sense_intronic AC009831.3 2 OTTHUMG00000186532.1 overlapping_locus +31748 chr18 HAVANA gene 32018372 32073213 6508.0 + 0 ENSG00000101695.8 protein_coding RNF125 2 OTTHUMG00000132266.3 overlapping_locus +31749 chr18 HAVANA gene 32075885 32076272 388.0 - 0 ENSG00000214917.3 processed_pseudogene AC011825.1 1 OTTHUMG00000158188.1 pseudo_consens +31750 chr18 HAVANA gene 32091295 32092119 473.0 - 0 ENSG00000265008.1 antisense AC011825.4 2 OTTHUMG00000179704.1 +31751 chr18 HAVANA gene 32018829 32111779 565.0 + 0 ENSG00000263917.1 processed_transcript AC011825.3 2 OTTHUMG00000179703.1 overlapping_locus +31752 chr18 HAVANA gene 32122400 32124478 553.0 - 0 ENSG00000263393.1 antisense AC011825.2 2 OTTHUMG00000179707.1 +31753 chr18 HAVANA gene 32091855 32131561 3795.0 + 0 ENSG00000134758.13 protein_coding RNF138 2 OTTHUMG00000132265.3 overlapping_locus +31754 chr18 ENSEMBL gene 32176050 32176168 119.0 - 0 ENSG00000199373.1 rRNA_pseudogene RNA5SP453 3 +31755 chr18 HAVANA gene 32196026 32196966 941.0 - 0 ENSG00000265279.1 processed_pseudogene CLUHP6 1 OTTHUMG00000179734.1 pseudo_consens,overlapping_locus +31756 chr18 HAVANA gene 32185069 32220404 2583.0 + 0 ENSG00000141434.11 protein_coding MEP1B 1 OTTHUMG00000179708.4 +31757 chr18 HAVANA gene 32245946 32249032 468.0 - 0 ENSG00000263904.1 sense_intronic AC015563.1 2 OTTHUMG00000179791.1 overlapping_locus +31758 chr18 ENSEMBL gene 32263135 32263234 100.0 - 0 ENSG00000222395.2 misc_RNA RF00019 3 +31759 chr18 HAVANA gene 32287437 32290340 772.0 + 0 ENSG00000264982.1 antisense AC015563.2 2 OTTHUMG00000179742.1 +31760 chr18 HAVANA gene 32412214 32413176 963.0 - 0 ENSG00000215492.6 processed_pseudogene HNRNPA1P7 2 OTTHUMG00000163726.1 overlapping_locus +31761 chr18 ENSEMBL gene 32412182 32413236 857.0 + 0 ENSG00000262477.1 lincRNA AC021224.1 3 +31762 chr18 HAVANA gene 32124877 32470484 7568.0 - 0 ENSG00000141441.15 protein_coding GAREM1 1 OTTHUMG00000132273.4 ncRNA_host,overlapping_locus +31763 chr18 HAVANA gene 32511663 32514634 2972.0 + 0 ENSG00000260389.1 transcribed_processed_pseudogene WBP11P1 1 OTTHUMG00000177061.1 pseudo_consens +31764 chr18 HAVANA gene 32581528 32582828 264.0 + 0 ENSG00000263688.1 lincRNA AC025887.1 2 OTTHUMG00000179806.1 +31765 chr18 HAVANA gene 32470288 32745567 5012.0 + 0 ENSG00000285095.1 antisense AC025887.2 2 OTTHUMG00000192477.1 +31766 chr18 HAVANA gene 32672671 32773062 4992.0 - 0 ENSG00000197705.9 protein_coding KLHL14 2 OTTHUMG00000179819.2 +31767 chr18 HAVANA gene 32769795 32774413 1661.0 + 0 ENSG00000228835.1 antisense AC012123.1 1 OTTHUMG00000154695.2 +31768 chr18 HAVANA gene 32779039 32779286 248.0 + 0 ENSG00000243355.1 processed_pseudogene AC012123.2 1 OTTHUMG00000158215.1 pseudo_consens +31769 chr18 HAVANA gene 32833454 32938316 1748.0 + 0 ENSG00000263765.5 antisense AC090371.2 2 OTTHUMG00000179835.3 +31770 chr18 HAVANA gene 32954075 32957998 558.0 + 0 ENSG00000263450.1 antisense AC090371.1 2 OTTHUMG00000179834.1 +31771 chr18 HAVANA gene 32937402 33441101 4475.0 - 0 ENSG00000166960.16 protein_coding CCDC178 2 OTTHUMG00000132279.7 +31772 chr18 HAVANA gene 33552123 33578187 2492.0 - 0 ENSG00000267642.1 lincRNA AC091198.1 2 OTTHUMG00000176156.1 +31773 chr18 HAVANA gene 33578233 33751192 13619.0 + 0 ENSG00000141431.11 protein_coding ASXL3 2 OTTHUMG00000178395.14 +31774 chr18 ENSEMBL gene 34001698 34001799 102.0 - 0 ENSG00000199204.1 misc_RNA RF00019 3 +31775 chr18 HAVANA gene 34221007 34221603 597.0 - 0 ENSG00000280406.1 TEC AC104985.3 2 OTTHUMG00000178471.1 overlapping_locus +31776 chr18 HAVANA gene 34222965 34224761 507.0 + 0 ENSG00000267746.1 antisense AC104985.1 2 OTTHUMG00000178472.1 +31777 chr18 HAVANA gene 33851100 34224952 5687.0 - 0 ENSG00000101746.15 protein_coding NOL4 1 OTTHUMG00000132291.5 ncRNA_host,overlapping_locus +31778 chr18 HAVANA gene 34225930 34226429 500.0 + 0 ENSG00000278052.1 lincRNA AC104985.2 2 OTTHUMG00000186533.1 +31779 chr18 HAVANA gene 34573987 34574523 537.0 - 0 ENSG00000267585.1 processed_pseudogene AC013290.1 1 OTTHUMG00000158233.3 pseudo_consens +31780 chr18 HAVANA gene 34737795 34767663 577.0 - 0 ENSG00000268873.1 antisense AC022601.1 2 OTTHUMG00000182437.1 +31781 chr18 HAVANA gene 34493290 34891844 12634.0 + 0 ENSG00000134769.21 protein_coding DTNA 1 OTTHUMG00000132309.6 +31782 chr18 HAVANA gene 34892013 34902885 670.0 - 0 ENSG00000278464.1 lincRNA AC068506.1 2 OTTHUMG00000186536.1 +31783 chr18 HAVANA gene 35082009 35082242 234.0 + 0 ENSG00000280096.1 TEC AC015967.2 2 OTTHUMG00000182418.1 overlapping_locus +31784 chr18 HAVANA gene 34976928 35143470 6180.0 + 0 ENSG00000166974.12 protein_coding MAPRE2 2 OTTHUMG00000132551.9 overlapping_locus +31785 chr18 HAVANA gene 35144942 35145417 476.0 + 0 ENSG00000274400.1 lincRNA AC015967.1 2 OTTHUMG00000186537.1 +31786 chr18 HAVANA gene 35257040 35257512 473.0 + 0 ENSG00000279989.1 TEC AC011815.3 2 OTTHUMG00000178534.1 overlapping_locus +31787 chr18 HAVANA gene 35241030 35267133 8710.0 + 0 ENSG00000186812.12 protein_coding ZNF397 1 OTTHUMG00000178532.7 overlapping_locus +31788 chr18 HAVANA gene 35268218 35270238 2021.0 + 0 ENSG00000274184.1 lincRNA AC011815.2 2 OTTHUMG00000186540.1 +31789 chr18 HAVANA gene 35280867 35290201 4382.0 - 0 ENSG00000268573.1 lincRNA AC011815.1 2 OTTHUMG00000182438.1 overlapping_locus +31790 chr18 HAVANA gene 35251058 35290245 8271.0 - 0 ENSG00000186814.13 protein_coding ZSCAN30 1 OTTHUMG00000178569.5 overlapping_locus +31791 chr18 HAVANA gene 35317396 35317848 453.0 + 0 ENSG00000274918.1 lincRNA AC116447.1 2 OTTHUMG00000186541.1 +31792 chr18 HAVANA gene 35290282 35328390 7450.0 + 0 ENSG00000257267.3 transcribed_unitary_pseudogene ZNF271P 2 OTTHUMG00000132563.3 +31793 chr18 HAVANA gene 35332212 35345482 8257.0 - 0 ENSG00000172466.15 protein_coding ZNF24 1 OTTHUMG00000132565.5 +31794 chr18 HAVANA gene 35366697 35377337 6052.0 - 0 ENSG00000186496.11 protein_coding ZNF396 2 OTTHUMG00000132562.7 +31795 chr18 HAVANA gene 35383354 35384025 672.0 - 0 ENSG00000239683.1 processed_pseudogene AC007998.1 1 OTTHUMG00000158234.1 pseudo_consens +31796 chr18 HAVANA gene 35403996 35406528 2533.0 - 0 ENSG00000275512.1 lincRNA AC007998.4 2 OTTHUMG00000178602.2 +31797 chr18 HAVANA gene 35443869 35467088 916.0 - 0 ENSG00000267583.5 lincRNA AC007998.3 2 OTTHUMG00000178686.1 overlapping_locus +31798 chr18 HAVANA gene 35483431 35483667 237.0 - 0 ENSG00000279074.1 TEC AC007998.5 2 OTTHUMG00000178667.1 overlapping_locus +31799 chr18 HAVANA gene 35443871 35497940 455.0 - 0 ENSG00000267140.1 protein_coding AC007998.2 2 OTTHUMG00000178687.1 overlapping_locus +31800 chr18 HAVANA gene 35452230 35497991 5085.0 - 0 ENSG00000153391.15 protein_coding INO80C 1 OTTHUMG00000132564.6 overlapping_locus +31801 chr18 ENSEMBL gene 35591737 35591806 70.0 + 0 ENSG00000283514.1 miRNA MIR3975 3 +31802 chr18 HAVANA gene 35595901 35597599 1699.0 + 0 ENSG00000266965.1 sense_intronic AC090220.1 2 OTTHUMG00000178766.1 overlapping_locus +31803 chr18 HAVANA gene 35581117 35711834 5126.0 + 0 ENSG00000141429.13 protein_coding GALNT1 2 OTTHUMG00000132567.5 ncRNA_host,overlapping_locus +31804 chr18 HAVANA gene 35716370 35717978 1609.0 + 0 ENSG00000267397.1 lincRNA AC090229.1 2 OTTHUMG00000176165.1 +31805 chr18 HAVANA gene 35841759 35842617 859.0 + 0 ENSG00000267797.1 processed_pseudogene NRBF2P1 1 OTTHUMG00000178768.1 pseudo_consens +31806 chr18 ENSEMBL gene 35904818 35904926 109.0 - 0 ENSG00000207797.1 miRNA MIR187 3 +31807 chr18 ENSEMBL gene 35934088 35934142 55.0 - 0 ENSG00000265641.1 miRNA MIR3929 3 +31808 chr18 HAVANA gene 35951803 35966118 731.0 - 0 ENSG00000267627.5 lincRNA AC118757.1 2 OTTHUMG00000178978.1 +31809 chr18 HAVANA gene 35972151 35973916 1766.0 + 0 ENSG00000278986.1 TEC AC091060.1 2 OTTHUMG00000178964.1 overlapping_locus +31810 chr18 HAVANA gene 35972083 35979286 2158.0 + 0 ENSG00000141428.16 protein_coding C18orf21 1 OTTHUMG00000128531.4 overlapping_locus +31811 chr18 HAVANA gene 35984387 36067576 8442.0 - 0 ENSG00000141425.17 protein_coding RPRD1A 2 OTTHUMG00000132591.7 +31812 chr18 HAVANA gene 36108532 36129385 3682.0 - 0 ENSG00000141424.12 protein_coding SLC39A6 1 OTTHUMG00000178965.3 +31813 chr18 HAVANA gene 36129444 36180556 11068.0 + 0 ENSG00000134759.13 protein_coding ELP2 1 OTTHUMG00000132589.5 +31814 chr18 HAVANA gene 36179996 36187448 609.0 - 0 ENSG00000260552.1 antisense AC023043.1 2 OTTHUMG00000176168.1 +31815 chr18 HAVANA gene 36189824 36190272 449.0 + 0 ENSG00000274849.1 sense_intronic AC023043.4 2 OTTHUMG00000186542.1 overlapping_locus +31816 chr18 HAVANA gene 36187519 36272157 6281.0 + 0 ENSG00000075643.5 protein_coding MOCOS 2 OTTHUMG00000132590.2 overlapping_locus +31817 chr18 HAVANA gene 36273574 36274599 1026.0 + 0 ENSG00000267404.1 processed_pseudogene AC023043.2 1 OTTHUMG00000178967.1 pseudo_consens +31818 chr18 HAVANA gene 36278735 36279119 385.0 - 0 ENSG00000267456.2 processed_pseudogene AC023043.3 1 OTTHUMG00000178974.2 pseudo_consens +31819 chr18 HAVANA gene 36297714 36780055 7965.0 + 0 ENSG00000134775.15 protein_coding FHOD3 1 OTTHUMG00000182381.5 +31820 chr18 HAVANA gene 36777647 36829216 10571.0 - 0 ENSG00000134779.14 protein_coding TPGS2 1 OTTHUMG00000178075.7 +31821 chr18 HAVANA gene 36901946 36923814 688.0 - 0 ENSG00000267039.1 antisense AC016493.1 2 OTTHUMG00000178088.1 +31822 chr18 HAVANA gene 36829106 37232172 11127.0 + 0 ENSG00000150477.14 protein_coding KIAA1328 1 OTTHUMG00000178087.8 +31823 chr18 HAVANA gene 37234119 37236242 2124.0 - 0 ENSG00000267651.1 lincRNA AC015961.1 2 OTTHUMG00000176170.2 +31824 chr18 HAVANA gene 37243776 37247506 701.0 + 0 ENSG00000267707.2 antisense AC015961.2 2 OTTHUMG00000178180.2 +31825 chr18 HAVANA gene 37273706 37276572 810.0 + 0 ENSG00000267202.5 antisense AC090386.1 2 OTTHUMG00000178182.1 +31826 chr18 HAVANA gene 37305295 37306333 1039.0 - 0 ENSG00000279678.1 TEC AC090386.2 2 OTTHUMG00000178183.1 overlapping_locus +31827 chr18 HAVANA gene 37473330 37473977 648.0 - 0 ENSG00000279543.1 TEC AC129908.1 2 OTTHUMG00000178185.1 overlapping_locus +31828 chr18 HAVANA gene 37243047 37566037 6532.0 - 0 ENSG00000101489.19 protein_coding CELF4 1 OTTHUMG00000178178.6 overlapping_locus +31829 chr18 ENSEMBL gene 37657135 37657215 81.0 + 0 ENSG00000266530.1 miRNA MIR4318 3 +31830 chr18 HAVANA gene 37672689 37673176 488.0 + 0 ENSG00000243516.1 processed_pseudogene RPL12P40 1 OTTHUMG00000158235.1 pseudo_consens +31831 chr18 HAVANA gene 37565281 37762131 2717.0 + 0 ENSG00000285940.1 antisense AC009899.1 2 OTTHUMG00000192972.1 ncRNA_host +31832 chr18 HAVANA gene 38655209 38687998 912.0 - 0 ENSG00000268566.5 lincRNA AC100781.1 2 OTTHUMG00000182398.2 +31833 chr18 ENSEMBL gene 39016047 39016344 298.0 - 0 ENSG00000222704.1 misc_RNA RN7SKP182 3 +31834 chr18 ENSEMBL gene 39034007 39034110 104.0 + 0 ENSG00000253038.1 snRNA RNU6-706P 3 +31835 chr18 HAVANA gene 39314240 39328008 609.0 + 0 ENSG00000283458.1 lincRNA AC011139.1 2 OTTHUMG00000191621.1 +31836 chr18 HAVANA gene 39334872 39335672 801.0 - 0 ENSG00000175886.10 processed_pseudogene RPL7AP66 2 OTTHUMG00000155303.2 overlapping_locus +31837 chr18 ENSEMBL gene 39622123 39622175 53.0 - 0 ENSG00000283615.1 miRNA MIR924 3 +31838 chr18 ENSEMBL gene 39676719 39676777 59.0 - 0 ENSG00000283645.1 miRNA MIR5583-2 3 +31839 chr18 ENSEMBL gene 39676721 39676779 59.0 + 0 ENSG00000266148.1 miRNA MIR5583-1 3 +31840 chr18 ENSEMBL gene 39678520 39678622 103.0 - 0 ENSG00000212354.1 snRNA RNU6-1242P 3 +31841 chr18 HAVANA gene 39206924 39800318 2782.0 - 0 ENSG00000267374.1 lincRNA AC016205.1 2 OTTHUMG00000178312.1 ncRNA_host,overlapping_locus +31842 chr18 HAVANA gene 39841809 39896298 11786.0 + 0 ENSG00000283503.1 lincRNA LINC01902 2 OTTHUMG00000191634.1 +31843 chr18 HAVANA gene 39841174 39924840 1115.0 - 0 ENSG00000267413.1 lincRNA LINC01901 2 OTTHUMG00000178309.1 +31844 chr18 HAVANA gene 40062903 40066471 3569.0 - 0 ENSG00000279034.1 TEC AC011266.1 2 OTTHUMG00000176176.1 +31845 chr18 HAVANA gene 40066286 40099233 1226.0 + 0 ENSG00000261715.1 lincRNA LINC01477 2 OTTHUMG00000176177.1 +31846 chr18 HAVANA gene 40143926 40144504 509.0 - 0 ENSG00000267664.1 processed_pseudogene RPL17P45 1 OTTHUMG00000182379.1 pseudo_consens +31847 chr18 HAVANA gene 41465783 41632185 5180.0 - 0 ENSG00000267313.7 lincRNA KC6 2 OTTHUMG00000178310.6 +31848 chr18 HAVANA gene 41789162 41789395 234.0 - 0 ENSG00000267652.1 processed_pseudogene AC011712.1 1 OTTHUMG00000178311.1 pseudo_consens +31849 chr18 HAVANA gene 41819053 41819421 369.0 + 0 ENSG00000225253.1 processed_pseudogene AC011225.1 1 OTTHUMG00000133614.1 pseudo_consens +31850 chr18 HAVANA gene 42052705 42053030 326.0 + 0 ENSG00000276174.1 sense_intronic AC087683.2 2 OTTHUMG00000186543.1 overlapping_locus +31851 chr18 HAVANA gene 41955206 42087830 15198.0 + 0 ENSG00000078142.12 protein_coding PIK3C3 2 OTTHUMG00000132593.6 overlapping_locus +31852 chr18 HAVANA gene 42089312 42089752 441.0 + 0 ENSG00000267088.1 processed_pseudogene AC087683.1 1 OTTHUMG00000178375.1 pseudo_consens +31853 chr18 ENSEMBL gene 42270589 42270715 127.0 + 0 ENSG00000253040.1 rRNA_pseudogene RNA5SP454 3 +31854 chr18 HAVANA gene 42159283 42691422 9813.0 + 0 ENSG00000267586.6 lincRNA LINC00907 2 OTTHUMG00000178321.4 +31855 chr18 HAVANA gene 42743227 43115691 1425.0 - 0 ENSG00000152214.13 protein_coding RIT2 2 OTTHUMG00000132611.6 +31856 chr18 HAVANA gene 43267878 43277650 4437.0 - 0 ENSG00000132872.11 protein_coding SYT4 2 OTTHUMG00000132610.5 +31857 chr18 HAVANA gene 43499173 43499836 664.0 + 0 ENSG00000278933.1 TEC AC022743.1 2 OTTHUMG00000178350.1 +31858 chr18 HAVANA gene 44039471 44040140 670.0 + 0 ENSG00000267716.1 processed_pseudogene AC083760.1 1 OTTHUMG00000178345.1 pseudo_consens +31859 chr18 ENSEMBL gene 44071583 44071701 119.0 + 0 ENSG00000202060.1 rRNA_pseudogene RNA5SP455 3 +31860 chr18 HAVANA gene 44320800 44322257 1458.0 - 0 ENSG00000267573.1 processed_pseudogene KRT8P5 1 OTTHUMG00000178346.1 pseudo_consens +31861 chr18 HAVANA gene 44214971 44342315 943.0 + 0 ENSG00000285550.1 lincRNA AC110014.1 2 OTTHUMG00000193184.1 +31862 chr18 HAVANA gene 44522366 44523074 709.0 + 0 ENSG00000277899.1 processed_pseudogene MLECP1 1 OTTHUMG00000187945.1 pseudo_consens +31863 chr18 HAVANA gene 44323436 44531697 2267.0 - 0 ENSG00000267337.1 lincRNA LINC01478 2 OTTHUMG00000178347.2 +31864 chr18 HAVANA gene 44676927 44679717 2065.0 - 0 ENSG00000267414.1 lincRNA AC120049.1 2 OTTHUMG00000176180.1 +31865 chr18 HAVANA gene 44732575 44733315 741.0 + 0 ENSG00000280365.1 TEC AC021766.1 2 OTTHUMG00000182467.1 overlapping_locus +31866 chr18 ENSEMBL gene 44970082 44970166 85.0 - 0 ENSG00000265957.1 miRNA MIR4319 3 +31867 chr18 HAVANA gene 44986109 44989203 3095.0 + 0 ENSG00000279319.1 TEC AC105074.1 2 OTTHUMG00000179033.1 overlapping_locus +31868 chr18 HAVANA gene 44680173 45068510 11151.0 + 0 ENSG00000152217.18 protein_coding SETBP1 2 OTTHUMG00000132613.8 overlapping_locus +31869 chr18 HAVANA gene 45130565 45181379 1317.0 - 0 ENSG00000267101.6 lincRNA AC090376.1 2 OTTHUMG00000179146.2 +31870 chr18 HAVANA gene 45423764 45483218 1391.0 - 0 ENSG00000267097.1 antisense SLC14A2-AS1 2 OTTHUMG00000179057.1 +31871 chr18 HAVANA gene 45491581 45503824 735.0 - 0 ENSG00000285790.1 lincRNA AC021517.2 2 OTTHUMG00000193021.1 +31872 chr18 HAVANA gene 45483345 45529855 2607.0 + 0 ENSG00000266988.5 sense_intronic AC021517.1 2 OTTHUMG00000179041.1 overlapping_locus +31873 chr18 HAVANA gene 45507202 45550183 726.0 + 0 ENSG00000267354.1 sense_intronic AC091151.1 2 OTTHUMG00000179042.1 overlapping_locus +31874 chr18 HAVANA gene 45646153 45647937 1785.0 + 0 ENSG00000266968.2 sense_intronic AC023421.1 2 OTTHUMG00000179043.2 overlapping_locus +31875 chr18 HAVANA gene 45212995 45683686 5409.0 + 0 ENSG00000132874.14 protein_coding SLC14A2 2 OTTHUMG00000132616.5 overlapping_locus +31876 chr18 HAVANA gene 45669367 45747215 731.0 - 0 ENSG00000267193.5 antisense AC023421.2 2 OTTHUMG00000179076.2 +31877 chr18 HAVANA gene 45687025 45752520 7182.0 + 0 ENSG00000141469.17 protein_coding SLC14A1 1 OTTHUMG00000132617.15 +31878 chr18 HAVANA gene 45788530 45788670 141.0 + 0 ENSG00000267558.2 processed_pseudogene AC087685.1 2 OTTHUMG00000179173.2 +31879 chr18 HAVANA gene 45825512 45844080 3598.0 + 0 ENSG00000197046.11 protein_coding SIGLEC15 2 OTTHUMG00000170870.5 +31880 chr18 HAVANA gene 45847609 45967339 13740.0 - 0 ENSG00000152223.13 protein_coding EPG5 2 OTTHUMG00000132626.5 +31881 chr18 ENSEMBL gene 45989653 45989945 293.0 - 0 ENSG00000222179.1 misc_RNA RN7SKP26 3 +31882 chr18 HAVANA gene 46028306 46029829 1524.0 + 0 ENSG00000267293.1 processed_pseudogene AC012569.1 1 OTTHUMG00000179386.1 pseudo_consens +31883 chr18 HAVANA gene 45983536 46072272 4120.0 - 0 ENSG00000152229.18 protein_coding PSTPIP2 2 OTTHUMG00000152674.3 ncRNA_host +31884 chr18 ENSEMBL gene 46077004 46077099 96.0 - 0 ENSG00000252034.1 misc_RNA RNY4P37 3 +31885 chr18 HAVANA gene 46080248 46104334 10908.0 - 0 ENSG00000152234.15 protein_coding ATP5F1A 1 OTTHUMG00000132637.9 +31886 chr18 ENSEMBL gene 46121615 46121721 107.0 - 0 ENSG00000251939.1 snRNA RNU6-1278P 3 +31887 chr18 HAVANA gene 46104332 46128333 2165.0 + 0 ENSG00000152240.12 protein_coding HAUS1 2 OTTHUMG00000132638.5 +31888 chr18 HAVANA gene 46173553 46266991 9576.0 + 0 ENSG00000152242.10 protein_coding C18orf25 2 OTTHUMG00000179190.7 +31889 chr18 HAVANA gene 46385707 46387083 1377.0 + 0 ENSG00000279829.1 TEC AC015959.1 2 OTTHUMG00000179231.1 overlapping_locus +31890 chr18 HAVANA gene 46409197 46410645 1246.0 - 0 ENSG00000285993.1 antisense AC018931.1 2 OTTHUMG00000193257.1 +31891 chr18 HAVANA gene 46326809 46463140 11419.0 + 0 ENSG00000141622.13 protein_coding RNF165 2 OTTHUMG00000179230.4 overlapping_locus +31892 chr18 HAVANA gene 46476972 46657220 9213.0 - 0 ENSG00000167210.17 protein_coding LOXHD1 1 OTTHUMG00000132644.11 +31893 chr18 HAVANA gene 46722975 46723223 249.0 + 0 ENSG00000240983.1 processed_pseudogene AC090311.1 1 OTTHUMG00000158244.1 pseudo_consens +31894 chr18 HAVANA gene 46667821 46759257 15789.0 - 0 ENSG00000101638.13 protein_coding ST8SIA5 2 OTTHUMG00000132643.4 +31895 chr18 HAVANA gene 46756487 46764408 5117.0 + 0 ENSG00000270112.3 processed_transcript AC090241.2 2 OTTHUMG00000184163.1 +31896 chr18 HAVANA gene 46786699 46789297 2599.0 - 0 ENSG00000274776.1 lincRNA AC090241.3 2 OTTHUMG00000186545.1 +31897 chr18 HAVANA gene 46852632 46853882 621.0 - 0 ENSG00000267587.1 processed_pseudogene AC090241.1 1 OTTHUMG00000179392.1 pseudo_consens,overlapping_locus +31898 chr18 HAVANA gene 46915021 46915623 603.0 - 0 ENSG00000279354.1 TEC AC090373.1 2 OTTHUMG00000179320.1 overlapping_locus +31899 chr18 HAVANA gene 46803224 46920160 17527.0 - 0 ENSG00000078043.15 protein_coding PIAS2 1 OTTHUMG00000179301.7 overlapping_locus +31900 chr18 HAVANA gene 46962768 46964408 1641.0 - 0 ENSG00000274744.1 protein_coding ELOA3D 2 OTTHUMG00000180382.2 retrogene +31901 chr18 HAVANA gene 46968695 46969912 1218.0 - 0 ENSG00000275553.3 protein_coding ELOA3C 2 OTTHUMG00000188256.3 retrogene +31902 chr18 HAVANA gene 47022287 47023927 1641.0 - 0 ENSG00000278674.1 protein_coding ELOA3B 2 OTTHUMG00000188257.2 retrogene +31903 chr18 HAVANA gene 47028202 47030078 1877.0 - 0 ENSG00000183791.4 protein_coding ELOA3 2 OTTHUMG00000132651.3 retrogene +31904 chr18 HAVANA gene 47032572 47035621 3050.0 - 0 ENSG00000206181.5 protein_coding ELOA2 2 OTTHUMG00000132649.1 retrogene +31905 chr18 HAVANA gene 47076117 47076594 478.0 + 0 ENSG00000280212.1 TEC AC012254.5 2 OTTHUMG00000179409.1 overlapping_locus +31906 chr18 HAVANA gene 47077361 47091280 200.0 - 0 ENSG00000266957.1 antisense AC012254.1 2 OTTHUMG00000179410.1 +31907 chr18 HAVANA gene 46917492 47102243 4783.0 + 0 ENSG00000167216.16 protein_coding KATNAL2 1 OTTHUMG00000179408.6 overlapping_locus +31908 chr18 HAVANA gene 47105946 47108062 2117.0 + 0 ENSG00000267724.1 antisense AC012254.3 2 OTTHUMG00000180357.1 +31909 chr18 HAVANA gene 47137018 47137290 273.0 + 0 ENSG00000267800.1 processed_pseudogene AC012254.4 1 OTTHUMG00000180183.1 pseudo_consens +31910 chr18 HAVANA gene 47107403 47150520 4704.0 - 0 ENSG00000167220.11 protein_coding HDHD2 2 OTTHUMG00000179411.5 overlapping_locus +31911 chr18 HAVANA gene 47108188 47176345 1786.0 - 0 ENSG00000267228.7 protein_coding AC012254.2 2 OTTHUMG00000180304.3 overlapping_locus +31912 chr18 HAVANA gene 47152834 47176374 4243.0 - 0 ENSG00000134049.5 protein_coding IER3IP1 2 OTTHUMG00000132650.3 overlapping_locus +31913 chr18 ENSEMBL gene 47234442 47234548 107.0 - 0 ENSG00000201825.1 snRNA RNU6-1131P 3 +31914 chr18 HAVANA gene 47206322 47251603 3941.0 - 0 ENSG00000215474.7 protein_coding SKOR2 2 OTTHUMG00000180309.4 ncRNA_host +31915 chr18 ENSEMBL gene 47380496 47380565 70.0 + 0 ENSG00000266582.1 miRNA MIR4527 3 +31916 chr18 HAVANA gene 47501172 47503106 1935.0 + 0 ENSG00000279367.1 TEC AC102797.2 2 OTTHUMG00000176184.1 overlapping_locus +31917 chr18 HAVANA gene 47501172 47558383 545.0 + 0 ENSG00000261307.1 lincRNA AC102797.1 2 OTTHUMG00000176186.1 overlapping_locus +31918 chr18 HAVANA gene 47285725 47594550 1397.0 + 0 ENSG00000267761.3 lincRNA MIR4527HG 2 OTTHUMG00000180284.4 ncRNA_host,overlapping_locus +31919 chr18 HAVANA gene 47630112 47630848 737.0 + 0 ENSG00000267156.1 processed_pseudogene TPMTP1 1 OTTHUMG00000180321.1 pseudo_consens +31920 chr18 HAVANA gene 47703175 47703745 571.0 + 0 ENSG00000267187.1 processed_pseudogene AC026898.1 2 OTTHUMG00000180359.1 +31921 chr18 HAVANA gene 47853233 47853457 225.0 - 0 ENSG00000267541.1 processed_pseudogene MTCO2P2 2 OTTHUMG00000180285.1 overlapping_locus +31922 chr18 HAVANA gene 47866839 47867367 529.0 + 0 ENSG00000279707.1 TEC AC120349.3 2 OTTHUMG00000180286.1 +31923 chr18 HAVANA gene 47878295 47882444 282.0 + 0 ENSG00000269365.2 antisense AC120349.1 2 OTTHUMG00000182511.2 overlapping_locus +31924 chr18 HAVANA gene 47912207 47912504 298.0 - 0 ENSG00000279366.1 TEC AC120349.2 2 OTTHUMG00000182512.1 overlapping_locus +31925 chr18 HAVANA gene 47808957 47931146 36366.0 - 0 ENSG00000175387.15 protein_coding SMAD2 1 OTTHUMG00000132652.4 overlapping_locus +31926 chr18 HAVANA gene 48147634 48150864 2873.0 - 0 ENSG00000278891.1 TEC AC105101.1 2 OTTHUMG00000180216.1 overlapping_locus +31927 chr18 ENSEMBL gene 48169784 48169890 107.0 - 0 ENSG00000206944.1 snRNA RNU6-708P 3 +31928 chr18 HAVANA gene 48252301 48252837 537.0 + 0 ENSG00000280197.1 TEC C18orf12 2 OTTHUMG00000180217.1 +31929 chr18 HAVANA gene 48026673 48410752 7648.0 - 0 ENSG00000184828.9 protein_coding ZBTB7C 2 OTTHUMG00000180322.2 ncRNA_host,overlapping_locus +31930 chr18 ENSEMBL gene 48475487 48475600 114.0 - 0 ENSG00000200872.1 rRNA_pseudogene RNA5SP456 3 +31931 chr18 HAVANA gene 48478282 48478491 210.0 - 0 ENSG00000277907.1 processed_pseudogene AC024288.1 2 OTTHUMG00000187946.1 +31932 chr18 HAVANA gene 48478561 48479228 668.0 + 0 ENSG00000266984.1 processed_pseudogene POLR3GP2 1 OTTHUMG00000180324.1 pseudo_consens +31933 chr18 HAVANA gene 48564795 48568342 3548.0 + 0 ENSG00000278983.1 TEC AC048380.2 2 OTTHUMG00000180000.1 overlapping_locus +31934 chr18 HAVANA gene 48661840 48662635 796.0 - 0 ENSG00000279629.1 TEC AC048380.3 2 OTTHUMG00000179905.1 +31935 chr18 ENSEMBL gene 48670600 48670668 69.0 + 0 ENSG00000266276.3 miRNA MIR4743 3 +31936 chr18 HAVANA gene 48673575 48688419 465.0 - 0 ENSG00000267762.1 antisense AC048380.1 2 OTTHUMG00000179906.1 +31937 chr18 HAVANA gene 48755693 48756318 626.0 + 0 ENSG00000279250.1 TEC AC022919.1 2 OTTHUMG00000179908.1 overlapping_locus +31938 chr18 HAVANA gene 48826051 48834770 877.0 - 0 ENSG00000267764.1 antisense AC093567.1 2 OTTHUMG00000180025.1 +31939 chr18 HAVANA gene 48539046 48863217 8100.0 + 0 ENSG00000134030.13 protein_coding CTIF 2 OTTHUMG00000132656.14 ncRNA_host,overlapping_locus +31940 chr18 HAVANA gene 48919853 48952052 5033.0 - 0 ENSG00000101665.9 protein_coding SMAD7 2 OTTHUMG00000132655.8 +31941 chr18 HAVANA gene 48962951 48963941 352.0 - 0 ENSG00000266905.1 lincRNA AC114684.1 2 OTTHUMG00000179909.1 +31942 chr18 HAVANA gene 49013106 49013819 714.0 + 0 ENSG00000280335.1 TEC AC016866.3 2 OTTHUMG00000179759.1 +31943 chr18 HAVANA gene 49023703 49048474 659.0 + 0 ENSG00000264269.1 antisense AC016866.1 2 OTTHUMG00000179698.1 +31944 chr18 ENSEMBL gene 49049687 49049768 82.0 - 0 ENSG00000263849.1 miRNA MIR4744 3 +31945 chr18 HAVANA gene 49116301 49126479 502.0 + 0 ENSG00000265128.1 antisense AC016866.2 2 OTTHUMG00000179749.1 +31946 chr18 HAVANA gene 49205912 49208781 472.0 + 0 ENSG00000266696.1 antisense AC044840.1 2 OTTHUMG00000179760.1 +31947 chr18 HAVANA gene 49431744 49447420 332.0 - 0 ENSG00000263895.1 sense_intronic AC100778.1 2 OTTHUMG00000179761.1 overlapping_locus +31948 chr18 HAVANA gene 49041474 49461347 7256.0 - 0 ENSG00000141627.13 protein_coding DYM 1 OTTHUMG00000132659.9 ncRNA_host,overlapping_locus +31949 chr18 HAVANA gene 49469803 49470223 421.0 + 0 ENSG00000264971.1 processed_pseudogene PRR13P4 1 OTTHUMG00000179700.2 pseudo_consens +31950 chr18 HAVANA gene 49484536 49486149 483.0 - 0 ENSG00000263916.1 sense_intronic AC100778.2 2 OTTHUMG00000179690.1 overlapping_locus +31951 chr18 HAVANA gene 49477250 49487252 5740.0 - 0 ENSG00000177576.11 protein_coding C18orf32 2 OTTHUMG00000179688.4 overlapping_locus +31952 chr18 ENSEMBL gene 49487373 49487422 50.0 + 0 ENSG00000284239.1 miRNA MIR1539 3 +31953 chr18 ENSEMBL gene 49489245 49489308 64.0 - 0 ENSG00000202093.1 snoRNA SNORD58C 3 +31954 chr18 ENSEMBL gene 49491283 49491347 65.0 - 0 ENSG00000206602.1 snoRNA SNORD58A 3 +31955 chr18 ENSEMBL gene 49491664 49491729 66.0 - 0 ENSG00000271982.1 snoRNA SNORD58B 3 +31956 chr18 HAVANA gene 49487339 49491878 582.0 + 0 ENSG00000265496.5 antisense AC100778.3 2 OTTHUMG00000179691.1 ncRNA_host +31957 chr18 HAVANA gene 49481681 49492479 1529.0 - 0 ENSG00000215472.10 protein_coding RPL17-C18orf32 1 OTTHUMG00000179689.4 ncRNA_host,overlapping_locus +31958 chr18 HAVANA gene 49488453 49492523 2466.0 - 0 ENSG00000265681.7 protein_coding RPL17 2 OTTHUMG00000179680.6 ncRNA_host,overlapping_locus +31959 chr18 HAVANA gene 49495147 49496896 1750.0 - 0 ENSG00000265182.1 processed_pseudogene SRP72P1 1 OTTHUMG00000179681.1 pseudo_consens +31960 chr18 HAVANA gene 49499390 49501860 2190.0 + 0 ENSG00000264464.1 lincRNA AC091170.1 2 OTTHUMG00000179657.1 +31961 chr18 HAVANA gene 49560699 49599182 13112.0 + 0 ENSG00000101670.11 protein_coding LIPG 1 OTTHUMG00000179658.4 +31962 chr18 HAVANA gene 49650350 49651160 811.0 + 0 ENSG00000267444.1 processed_pseudogene SMUG1P1 1 OTTHUMG00000179820.1 pseudo_consens +31963 chr18 HAVANA gene 49739823 49742063 340.0 - 0 ENSG00000267674.1 lincRNA AC090227.2 2 OTTHUMG00000179821.1 +31964 chr18 HAVANA gene 49782167 49813960 5072.0 - 0 ENSG00000167315.17 protein_coding ACAA2 1 OTTHUMG00000132667.10 overlapping_locus +31965 chr18 ENSEMBL gene 49814133 49814276 144.0 + 0 ENSG00000251992.1 scaRNA SCARNA17 3 +31966 chr18 ENSEMBL gene 49814361 49814443 83.0 + 0 ENSG00000252139.1 scaRNA RF00283 3 +31967 chr18 HAVANA gene 49795793 49837623 936.0 - 0 ENSG00000266997.2 protein_coding AC090227.1 2 OTTHUMG00000179848.2 overlapping_locus +31968 chr18 HAVANA gene 49814023 49851059 2593.0 + 0 ENSG00000267322.2 antisense SNHG22 2 OTTHUMG00000179829.3 ncRNA_host +31969 chr18 ENSEMBL gene 49871555 49871666 112.0 - 0 ENSG00000201668.1 misc_RNA RF00019 3 +31970 chr18 ENSEMBL gene 49946266 49946389 124.0 - 0 ENSG00000200527.1 rRNA_pseudogene RNA5SP457 3 +31971 chr18 HAVANA gene 49969721 49970957 375.0 - 0 ENSG00000267196.1 sense_intronic AC091044.1 2 OTTHUMG00000179844.1 overlapping_locus +31972 chr18 HAVANA gene 50063795 50064440 646.0 + 0 ENSG00000267511.1 processed_pseudogene ADAD1P2 2 OTTHUMG00000179830.1 +31973 chr18 HAVANA gene 50098742 50099162 421.0 + 0 ENSG00000267591.1 processed_pseudogene AC105224.1 1 OTTHUMG00000179849.1 pseudo_consens +31974 chr18 ENSEMBL gene 50126499 50126563 65.0 - 0 ENSG00000283343.1 miRNA MIR4320 3 +31975 chr18 HAVANA gene 49822813 50195093 10488.0 - 0 ENSG00000167306.19 protein_coding MYO5B 2 OTTHUMG00000179843.4 ncRNA_host,overlapping_locus +31976 chr18 ENSEMBL gene 50206998 50207278 281.0 - 0 ENSG00000240663.3 misc_RNA RN7SL310P 3 +31977 chr18 HAVANA gene 50256036 50256461 426.0 - 0 ENSG00000277310.1 sense_intronic AC090246.1 2 OTTHUMG00000186547.1 overlapping_locus +31978 chr18 HAVANA gene 50227193 50266522 1851.0 - 0 ENSG00000172361.5 protein_coding CFAP53 2 OTTHUMG00000132668.3 overlapping_locus +31979 chr18 HAVANA gene 50266882 50281774 6734.0 - 0 ENSG00000141644.17 protein_coding MBD1 1 OTTHUMG00000132669.8 +31980 chr18 HAVANA gene 50282343 50288304 4319.0 - 0 ENSG00000154832.14 protein_coding CXXC1 2 OTTHUMG00000132670.11 +31981 chr18 HAVANA gene 50302190 50313595 438.0 + 0 ENSG00000267695.1 lincRNA AC105227.1 2 OTTHUMG00000179852.1 +31982 chr18 HAVANA gene 50318420 50319024 605.0 + 0 ENSG00000274930.1 processed_pseudogene AC105227.2 1 OTTHUMG00000187947.1 pseudo_consens +31983 chr18 ENSEMBL gene 50319002 50319120 119.0 + 0 ENSG00000251997.1 rRNA_pseudogene RNA5SP458 3 +31984 chr18 HAVANA gene 50374995 50394173 2950.0 + 0 ENSG00000154839.9 protein_coding SKA1 2 OTTHUMG00000132685.7 +31985 chr18 HAVANA gene 50457887 50458795 909.0 + 0 ENSG00000239780.1 processed_pseudogene RPLP0P11 1 OTTHUMG00000158245.1 pseudo_consens +31986 chr18 HAVANA gene 50669510 50670215 398.0 + 0 ENSG00000267713.1 transcribed_processed_pseudogene AC012433.1 2 OTTHUMG00000179881.1 overlapping_locus +31987 chr18 HAVANA gene 50560078 50731824 7601.0 + 0 ENSG00000141639.11 protein_coding MAPK4 1 OTTHUMG00000179853.5 overlapping_locus +31988 chr18 HAVANA gene 50814392 50815730 1016.0 + 0 ENSG00000267233.1 processed_pseudogene HNRNPA3P16 1 OTTHUMG00000180040.1 pseudo_consens +31989 chr18 HAVANA gene 50823577 50824120 544.0 + 0 ENSG00000239689.1 processed_pseudogene RPL17P46 1 OTTHUMG00000158248.2 pseudo_consens +31990 chr18 HAVANA gene 50795120 50825402 5525.0 - 0 ENSG00000134042.12 protein_coding MRO 2 OTTHUMG00000132692.13 +31991 chr18 HAVANA gene 50878734 50954257 16243.0 + 0 ENSG00000082212.12 protein_coding ME2 2 OTTHUMG00000132694.9 +31992 chr18 ENSEMBL gene 50959267 50959379 113.0 - 0 ENSG00000200752.1 misc_RNA RF00019 3 +31993 chr18 HAVANA gene 50967991 50988121 3970.0 + 0 ENSG00000141642.8 protein_coding ELAC1 2 OTTHUMG00000132695.3 overlapping_locus +31994 chr18 HAVANA gene 50968019 51058144 1305.0 + 0 ENSG00000267699.2 protein_coding AC091551.1 2 OTTHUMG00000180063.3 overlapping_locus +31995 chr18 HAVANA gene 51028394 51085045 13123.0 + 0 ENSG00000141646.13 protein_coding SMAD4 1 OTTHUMG00000132696.9 overlapping_locus +31996 chr18 HAVANA gene 51158282 51159383 764.0 - 0 ENSG00000267717.1 processed_pseudogene SRSF10P1 1 OTTHUMG00000180041.1 pseudo_consens +31997 chr18 HAVANA gene 51174550 51218304 7481.0 - 0 ENSG00000176624.10 protein_coding MEX3C 2 OTTHUMG00000132693.4 +31998 chr18 ENSEMBL gene 51283733 51283896 164.0 - 0 ENSG00000207154.1 snRNA RNU1-46P 3 +31999 chr18 HAVANA gene 51421063 51421674 235.0 - 0 ENSG00000266201.1 processed_pseudogene SS18L2P2 1 OTTHUMG00000179693.1 pseudo_consens +32000 chr18 HAVANA gene 51433437 51434783 1347.0 + 0 ENSG00000266003.1 processed_pseudogene AC109315.1 1 OTTHUMG00000179694.2 pseudo_consens,overlapping_locus +32001 chr18 HAVANA gene 51612639 51613110 472.0 - 0 ENSG00000265402.1 processed_pseudogene RSL24D1P9 1 OTTHUMG00000179695.1 pseudo_consens +32002 chr18 HAVANA gene 51346249 51643939 13405.0 + 0 ENSG00000227115.7 lincRNA LINC01630 2 OTTHUMG00000179692.4 overlapping_locus +32003 chr18 HAVANA gene 51687525 51688209 685.0 - 0 ENSG00000265712.1 processed_pseudogene AC027216.1 1 OTTHUMG00000179696.1 pseudo_consens +32004 chr18 HAVANA gene 51845007 51845628 622.0 - 0 ENSG00000215457.5 processed_pseudogene RPS8P3 1 OTTHUMG00000158249.2 pseudo_consens +32005 chr18 HAVANA gene 52283909 52309224 2178.0 + 0 ENSG00000285695.1 lincRNA AC016383.2 2 OTTHUMG00000192754.1 +32006 chr18 HAVANA gene 52336361 52339025 714.0 - 0 ENSG00000266335.1 lincRNA AC016383.1 2 OTTHUMG00000179712.1 +32007 chr18 HAVANA gene 52409042 52409257 216.0 + 0 ENSG00000280098.1 TEC AC011155.1 2 OTTHUMG00000192084.1 overlapping_locus +32008 chr18 HAVANA gene 52419189 52419644 456.0 - 0 ENSG00000273762.1 unprocessed_pseudogene VN1R76P 2 OTTHUMG00000187948.1 +32009 chr18 ENSEMBL gene 53237101 53237190 90.0 + 0 ENSG00000263872.1 miRNA MIR4528 3 +32010 chr18 HAVANA gene 52340172 53535903 13160.0 + 0 ENSG00000187323.11 protein_coding DCC 1 OTTHUMG00000132698.6 ncRNA_host,overlapping_locus +32011 chr18 HAVANA gene 53480835 53581091 1716.0 - 0 ENSG00000260433.2 processed_transcript LINC01917 2 OTTHUMG00000179713.2 +32012 chr18 HAVANA gene 53568447 53597851 1076.0 + 0 ENSG00000263438.5 lincRNA LINC01919 2 OTTHUMG00000179714.1 +32013 chr18 HAVANA gene 53605254 53605725 472.0 - 0 ENSG00000242945.2 processed_pseudogene RPL29P32 1 OTTHUMG00000158250.2 pseudo_consens +32014 chr18 HAVANA gene 54142133 54142577 445.0 + 0 ENSG00000264296.1 processed_pseudogene AC090666.1 2 OTTHUMG00000179758.1 +32015 chr18 ENSEMBL gene 54222284 54222412 129.0 - 0 ENSG00000207233.1 snoRNA SNORA37 3 +32016 chr18 HAVANA gene 54151601 54224788 5810.0 - 0 ENSG00000134046.11 protein_coding MBD2 1 OTTHUMG00000132705.4 ncRNA_host +32017 chr18 HAVANA gene 54268346 54270028 1683.0 - 0 ENSG00000277324.1 antisense AC093462.1 2 OTTHUMG00000186552.1 +32018 chr18 HAVANA gene 54269404 54321266 9471.0 + 0 ENSG00000101751.10 protein_coding POLI 1 OTTHUMG00000132704.7 +32019 chr18 HAVANA gene 54324358 54357964 1862.0 - 0 ENSG00000174448.8 protein_coding STARD6 1 OTTHUMG00000132702.5 +32020 chr18 HAVANA gene 54357917 54385218 6062.0 + 0 ENSG00000166845.14 protein_coding C18orf54 2 OTTHUMG00000132703.7 +32021 chr18 HAVANA gene 54406889 54407114 226.0 - 0 ENSG00000264350.1 processed_pseudogene SNRPGP2 1 OTTHUMG00000179764.1 pseudo_consens +32022 chr18 HAVANA gene 54412763 54424632 1157.0 + 0 ENSG00000283613.1 unitary_pseudogene AC090897.2 2 OTTHUMG00000191730.2 +32023 chr18 HAVANA gene 54525434 54525563 130.0 + 0 ENSG00000264564.1 processed_pseudogene AC090897.1 2 OTTHUMG00000179765.1 +32024 chr18 HAVANA gene 54566997 54567303 307.0 + 0 ENSG00000267428.1 processed_pseudogene AC091135.1 2 OTTHUMG00000179889.1 +32025 chr18 HAVANA gene 54587757 54599493 2137.0 + 0 ENSG00000178690.3 protein_coding DYNAP 1 OTTHUMG00000132709.3 +32026 chr18 HAVANA gene 54744750 54745581 832.0 + 0 ENSG00000267524.1 processed_pseudogene RPSAP57 1 OTTHUMG00000158251.2 pseudo_consens,overlapping_locus +32027 chr18 HAVANA gene 54879457 54880809 1100.0 + 0 ENSG00000267311.1 lincRNA AC007673.1 2 OTTHUMG00000179833.1 overlapping_locus +32028 chr18 HAVANA gene 54717860 54895516 7432.0 + 0 ENSG00000041353.9 protein_coding RAB27B 1 OTTHUMG00000132710.6 overlapping_locus +32029 chr18 HAVANA gene 54885866 54898083 567.0 - 0 ENSG00000267112.1 antisense AC098848.1 2 OTTHUMG00000179811.1 +32030 chr18 HAVANA gene 54954403 54954732 330.0 + 0 ENSG00000267647.1 processed_pseudogene MAP1LC3P 1 OTTHUMG00000179818.1 pseudo_consens +32031 chr18 HAVANA gene 54901509 54959508 5180.0 - 0 ENSG00000166510.13 protein_coding CCDC68 2 OTTHUMG00000132708.3 +32032 chr18 HAVANA gene 55105904 55124306 3170.0 - 0 ENSG00000267013.5 lincRNA LINC01929 2 OTTHUMG00000176191.2 +32033 chr18 ENSEMBL gene 55146546 55146645 100.0 - 0 ENSG00000252437.1 rRNA_pseudogene RNA5SP459 3 +32034 chr18 ENSEMBL gene 55479221 55479298 78.0 + 0 ENSG00000264571.1 miRNA MIR4529 3 +32035 chr18 HAVANA gene 55452533 55482940 396.0 + 0 ENSG00000267028.1 antisense TCF4-AS1 2 OTTHUMG00000179868.1 ncRNA_host +32036 chr18 HAVANA gene 55492175 55496392 445.0 + 0 ENSG00000267402.1 antisense TCF4-AS2 2 OTTHUMG00000179869.1 +32037 chr18 HAVANA gene 55635833 55636310 478.0 + 0 ENSG00000242320.2 processed_pseudogene RPL21P126 2 OTTHUMG00000158252.3 +32038 chr18 HAVANA gene 55222331 55664787 27828.0 - 0 ENSG00000196628.16 protein_coding TCF4 1 OTTHUMG00000132713.32 +32039 chr18 HAVANA gene 55776727 55781721 4134.0 - 0 ENSG00000267325.1 lincRNA LINC01415 2 OTTHUMG00000179871.1 +32040 chr18 HAVANA gene 55721063 55788761 1231.0 + 0 ENSG00000267284.1 lincRNA AC022031.2 2 OTTHUMG00000179870.1 +32041 chr18 HAVANA gene 55817167 55819759 2593.0 + 0 ENSG00000267172.1 lincRNA AC022031.1 2 OTTHUMG00000179872.1 +32042 chr18 HAVANA gene 55881688 55920199 2310.0 - 0 ENSG00000260930.1 lincRNA LINC01416 2 OTTHUMG00000176192.1 +32043 chr18 HAVANA gene 55893038 56023522 949.0 + 0 ENSG00000267327.1 lincRNA AC009271.1 2 OTTHUMG00000180033.1 +32044 chr18 HAVANA gene 56061109 56063078 552.0 - 0 ENSG00000267399.1 lincRNA AC006305.2 2 OTTHUMG00000180039.1 overlapping_locus +32045 chr18 ENSEMBL gene 56079394 56079594 201.0 - 0 ENSG00000201816.1 snoRNA RF00045 3 +32046 chr18 HAVANA gene 56042135 56096319 1248.0 + 0 ENSG00000267057.5 lincRNA LINC01905 2 OTTHUMG00000180036.1 +32047 chr18 HAVANA gene 56083356 56137536 3458.0 - 0 ENSG00000267712.5 lincRNA LINC01539 2 OTTHUMG00000180037.2 overlapping_locus +32048 chr18 HAVANA gene 56138612 56143221 454.0 + 0 ENSG00000267732.1 lincRNA AC006305.3 2 OTTHUMG00000180038.1 +32049 chr18 HAVANA gene 56003613 56191262 3011.0 - 0 ENSG00000206129.4 lincRNA AC006305.1 2 OTTHUMG00000180034.3 ncRNA_host,overlapping_locus +32050 chr18 HAVANA gene 56597208 56651600 11298.0 - 0 ENSG00000091164.12 protein_coding TXNL1 2 OTTHUMG00000132722.6 +32051 chr18 ENSEMBL gene 56753226 56753326 101.0 - 0 ENSG00000206865.1 misc_RNA RF00019 3 +32052 chr18 HAVANA gene 56872668 56873970 581.0 - 0 ENSG00000267146.1 antisense AC012301.1 2 OTTHUMG00000180074.1 +32053 chr18 ENSEMBL gene 56957270 56957469 200.0 + 0 ENSG00000212539.2 snoRNA RF00012 3 +32054 chr18 HAVANA gene 56651343 57036606 15694.0 + 0 ENSG00000091157.13 protein_coding WDR7 1 OTTHUMG00000132721.7 ncRNA_host,overlapping_locus +32055 chr18 HAVANA gene 57027832 57038845 565.0 + 0 ENSG00000267225.1 sense_overlapping WDR7-OT1 2 OTTHUMG00000180085.1 overlapping_locus +32056 chr18 HAVANA gene 57054558 57072119 3891.0 - 0 ENSG00000258609.3 lincRNA LINC-ROR 2 OTTHUMG00000171587.3 +32057 chr18 HAVANA gene 57136322 57146998 522.0 - 0 ENSG00000267789.1 lincRNA AC100775.1 2 OTTHUMG00000180099.1 +32058 chr18 HAVANA gene 57147062 57150300 3239.0 + 0 ENSG00000228075.4 protein_coding BOD1L2 2 OTTHUMG00000180124.1 retrogene +32059 chr18 HAVANA gene 57169615 57171194 478.0 - 0 ENSG00000267726.1 lincRNA LINC02565 2 OTTHUMG00000180100.1 +32060 chr18 ENSEMBL gene 57284602 57284708 107.0 - 0 ENSG00000202240.1 snRNA RNU6-737P 3 +32061 chr18 HAVANA gene 57350813 57371731 12068.0 + 0 ENSG00000177511.5 protein_coding ST8SIA3 2 OTTHUMG00000180101.3 +32062 chr18 HAVANA gene 57427133 57432112 4980.0 + 0 ENSG00000277837.1 lincRNA AC090340.1 2 OTTHUMG00000172421.1 +32063 chr18 HAVANA gene 57435685 57491297 16234.0 + 0 ENSG00000119547.5 protein_coding ONECUT2 2 OTTHUMG00000159776.4 +32064 chr18 HAVANA gene 57548283 57586772 4473.0 - 0 ENSG00000066926.10 protein_coding FECH 1 OTTHUMG00000132740.3 +32065 chr18 HAVANA gene 57588611 57589091 481.0 - 0 ENSG00000278703.1 lincRNA AC100847.1 2 OTTHUMG00000186554.1 +32066 chr18 HAVANA gene 57600656 57622213 4089.0 - 0 ENSG00000134440.11 protein_coding NARS 2 OTTHUMG00000180125.6 +32067 chr18 HAVANA gene 57630302 57669296 2397.0 + 0 ENSG00000267040.6 antisense AC027097.1 2 OTTHUMG00000132739.3 overlapping_locus +32068 chr18 HAVANA gene 57639455 57738603 2670.0 + 0 ENSG00000267787.6 antisense AC027097.2 2 OTTHUMG00000180254.2 overlapping_locus +32069 chr18 ENSEMBL gene 57755394 57755500 107.0 + 0 ENSG00000202159.1 snRNA RNU6-742P 3 +32070 chr18 HAVANA gene 57646426 57803315 7028.0 - 0 ENSG00000081923.13 protein_coding ATP8B1 2 OTTHUMG00000180255.8 +32071 chr18 HAVANA gene 57838476 57838966 491.0 + 0 ENSG00000231544.3 processed_pseudogene RSL24D1P11 1 OTTHUMG00000180257.1 pseudo_consens +32072 chr18 HAVANA gene 57961231 57964434 405.0 - 0 ENSG00000267209.5 lincRNA LINC01897 2 OTTHUMG00000179890.1 +32073 chr18 HAVANA gene 58018794 58019061 268.0 - 0 ENSG00000235028.3 processed_pseudogene HMGN1P30 1 OTTHUMG00000179874.1 pseudo_consens +32074 chr18 HAVANA gene 58189834 58195696 568.0 - 0 ENSG00000267743.5 antisense AC107896.1 2 OTTHUMG00000179964.1 +32075 chr18 HAVANA gene 58371566 58372666 1101.0 + 0 ENSG00000267504.1 sense_intronic AC090236.2 2 OTTHUMG00000179946.1 overlapping_locus +32076 chr18 HAVANA gene 58398663 58400082 768.0 - 0 ENSG00000267396.1 antisense AC090236.1 2 OTTHUMG00000179965.1 +32077 chr18 HAVANA gene 58044367 58401540 17455.0 + 0 ENSG00000049759.17 protein_coding NEDD4L 1 OTTHUMG00000179875.10 overlapping_locus +32078 chr18 HAVANA gene 58416765 58417628 646.0 + 0 ENSG00000267675.1 lincRNA AC105105.2 2 OTTHUMG00000179966.1 +32079 chr18 ENSEMBL gene 58451080 58451152 73.0 - 0 ENSG00000207778.3 miRNA MIR3591 3 +32080 chr18 ENSEMBL gene 58451074 58451158 85.0 + 0 ENSG00000284440.1 miRNA MIR122 3 +32081 chr18 HAVANA gene 58446275 58453766 4521.0 + 0 ENSG00000267391.4 lincRNA MIR122HG 2 OTTHUMG00000179967.2 ncRNA_host +32082 chr18 HAVANA gene 58476191 58477484 1294.0 + 0 ENSG00000276403.1 lincRNA AC105105.4 2 OTTHUMG00000176193.1 +32083 chr18 HAVANA gene 58511598 58512310 713.0 - 0 ENSG00000274354.1 sense_intronic AC105105.3 2 OTTHUMG00000186655.1 overlapping_locus +32084 chr18 HAVANA gene 58535415 58538552 2553.0 + 0 ENSG00000267257.1 antisense AC105105.1 2 OTTHUMG00000179968.1 +32085 chr18 HAVANA gene 58557070 58566677 335.0 + 0 ENSG00000267579.1 antisense AC104971.2 2 OTTHUMG00000179969.1 +32086 chr18 ENSEMBL gene 58600631 58600698 68.0 + 0 ENSG00000252284.1 snoRNA SNORA108 3 +32087 chr18 HAVANA gene 58481247 58628957 9431.0 - 0 ENSG00000198796.6 protein_coding ALPK2 2 OTTHUMG00000132755.2 overlapping_locus +32088 chr18 HAVANA gene 58631259 58632120 578.0 + 0 ENSG00000239659.2 processed_pseudogene RPL9P31 1 OTTHUMG00000158254.2 pseudo_consens +32089 chr18 HAVANA gene 58659858 58660524 249.0 + 0 ENSG00000275418.1 lincRNA AC104971.3 2 OTTHUMG00000186656.1 +32090 chr18 HAVANA gene 58670009 58671877 1209.0 - 0 ENSG00000267226.2 bidirectional_promoter_lncRNA AC104971.1 2 OTTHUMG00000180006.2 +32091 chr18 HAVANA gene 58690356 58692153 1337.0 + 0 ENSG00000266946.1 processed_pseudogene MRPL37P1 1 OTTHUMG00000180008.1 pseudo_consens,overlapping_locus +32092 chr18 HAVANA gene 58672613 58752730 670.0 - 0 ENSG00000267476.1 antisense AC104365.1 2 OTTHUMG00000180007.2 overlapping_locus +32093 chr18 HAVANA gene 58752179 58753898 625.0 - 0 ENSG00000267705.1 lincRNA AC104365.3 2 OTTHUMG00000180010.1 overlapping_locus +32094 chr18 HAVANA gene 58671386 58754477 10850.0 + 0 ENSG00000172175.13 protein_coding MALT1 2 OTTHUMG00000132761.7 overlapping_locus +32095 chr18 HAVANA gene 58754859 58757842 740.0 - 0 ENSG00000267501.1 lincRNA AC104365.2 2 OTTHUMG00000180011.1 +32096 chr18 ENSEMBL gene 58805268 58805374 107.0 + 0 ENSG00000201598.1 snRNA RNU6-219P 3 +32097 chr18 ENSEMBL gene 58818883 58819016 134.0 - 0 ENSG00000199713.1 snoRNA RF00096 3 +32098 chr18 HAVANA gene 58813880 58834364 478.0 + 0 ENSG00000267593.1 lincRNA LINC01926 2 OTTHUMG00000180012.1 +32099 chr18 ENSEMBL gene 58926197 58926296 100.0 - 0 ENSG00000251870.1 snRNA RNU2-69P 3 +32100 chr18 HAVANA gene 58862600 58986480 11951.0 + 0 ENSG00000074657.13 protein_coding ZNF532 1 OTTHUMG00000132759.7 +32101 chr18 HAVANA gene 58996734 59069338 3166.0 + 0 ENSG00000224367.6 transcribed_unitary_pseudogene OACYLP 2 OTTHUMG00000154709.2 +32102 chr18 HAVANA gene 59081924 59084981 911.0 + 0 ENSG00000267215.1 lincRNA AC040963.1 2 OTTHUMG00000180032.1 +32103 chr18 HAVANA gene 59139477 59158836 4511.0 + 0 ENSG00000166562.8 protein_coding SEC11C 1 OTTHUMG00000132762.3 +32104 chr18 HAVANA gene 59220168 59230774 851.0 + 0 ENSG00000134443.9 protein_coding GRP 1 OTTHUMG00000132760.4 +32105 chr18 HAVANA gene 59267035 59274086 3725.0 - 0 ENSG00000134438.9 protein_coding RAX 2 OTTHUMG00000132757.5 +32106 chr18 HAVANA gene 59275156 59318649 3545.0 - 0 ENSG00000166569.8 protein_coding CPLX4 2 OTTHUMG00000132756.2 +32107 chr18 HAVANA gene 59327823 59359962 6767.0 - 0 ENSG00000074695.5 protein_coding LMAN1 2 OTTHUMG00000132758.2 +32108 chr18 HAVANA gene 59360700 59386749 417.0 + 0 ENSG00000267677.1 lincRNA AC016229.2 2 OTTHUMG00000180086.1 +32109 chr18 HAVANA gene 59459072 59465682 487.0 + 0 ENSG00000267000.1 antisense AC016229.1 2 OTTHUMG00000180088.1 +32110 chr18 HAVANA gene 59563709 59568615 546.0 + 0 ENSG00000267061.1 antisense AC090213.1 2 OTTHUMG00000180089.1 +32111 chr18 HAVANA gene 59685820 59688400 542.0 + 0 ENSG00000267269.1 antisense AC010776.1 2 OTTHUMG00000180090.1 +32112 chr18 HAVANA gene 59430939 59697662 6753.0 - 0 ENSG00000183287.14 protein_coding CCBE1 2 OTTHUMG00000180087.6 +32113 chr18 HAVANA gene 59696459 59698111 1081.0 + 0 ENSG00000267774.2 antisense AC010776.2 2 OTTHUMG00000180091.2 +32114 chr18 HAVANA gene 59700523 59700946 424.0 + 0 ENSG00000273664.1 lincRNA AC010776.3 2 OTTHUMG00000186658.1 +32115 chr18 HAVANA gene 59761558 59761905 348.0 + 0 ENSG00000224161.3 processed_pseudogene RPS26P54 1 OTTHUMG00000158255.1 pseudo_consens +32116 chr18 HAVANA gene 59778572 59778989 418.0 + 0 ENSG00000267486.1 processed_pseudogene GLUD1P4 1 OTTHUMG00000179948.1 pseudo_consens +32117 chr18 HAVANA gene 59821040 59825261 1114.0 + 0 ENSG00000267669.1 transcribed_processed_pseudogene AC098847.1 1 OTTHUMG00000179949.2 pseudo_consens +32118 chr18 HAVANA gene 59899948 59904306 2235.0 + 0 ENSG00000141682.11 protein_coding PMAIP1 2 OTTHUMG00000132765.2 +32119 chr18 HAVANA gene 59929226 59930330 489.0 + 0 ENSG00000267066.1 processed_pseudogene AC107990.1 1 OTTHUMG00000179950.1 pseudo_consens +32120 chr18 HAVANA gene 59969438 59971396 1959.0 + 0 ENSG00000267497.1 processed_pseudogene NFE2L3P1 1 OTTHUMG00000179951.1 pseudo_consens +32121 chr18 ENSEMBL gene 59972914 59973207 294.0 + 0 ENSG00000239398.3 misc_RNA RN7SL342P 3 +32122 chr18 HAVANA gene 60009994 60011143 1150.0 - 0 ENSG00000256704.3 processed_pseudogene SDCCAG3P1 1 OTTHUMG00000179952.1 pseudo_consens +32123 chr18 HAVANA gene 60010281 60014258 1762.0 + 0 ENSG00000267462.1 lincRNA AC090377.1 2 OTTHUMG00000179953.1 +32124 chr18 HAVANA gene 60016778 60017441 664.0 - 0 ENSG00000267742.1 processed_pseudogene SINHCAFP2 1 OTTHUMG00000179954.1 pseudo_consens +32125 chr18 ENSEMBL gene 60018625 60018731 107.0 + 0 ENSG00000252555.1 snRNA RNU6-567P 3 +32126 chr18 HAVANA gene 60149576 60150365 790.0 + 0 ENSG00000242060.1 processed_pseudogene RPS3AP49 1 OTTHUMG00000158256.1 pseudo_consens,overlapping_locus +32127 chr18 HAVANA gene 60125033 60161195 571.0 + 0 ENSG00000267686.1 lincRNA AC090771.2 1 OTTHUMG00000179955.1 overlapping_locus +32128 chr18 ENSEMBL gene 60163567 60163707 141.0 + 0 ENSG00000202468.1 snRNA RNU4-17P 3 +32129 chr18 HAVANA gene 60196555 60198172 1618.0 + 0 ENSG00000267620.1 processed_pseudogene AC090771.1 1 OTTHUMG00000179956.1 pseudo_consens +32130 chr18 HAVANA gene 60294151 60301118 419.0 + 0 ENSG00000267401.1 lincRNA AC090621.1 2 OTTHUMG00000180042.1 +32131 chr18 HAVANA gene 60371062 60372775 1714.0 - 0 ENSG00000166603.5 protein_coding MC4R 2 OTTHUMG00000132766.2 +32132 chr18 HAVANA gene 60495868 60496336 287.0 - 0 ENSG00000267400.1 processed_pseudogene AC010928.2 1 OTTHUMG00000179957.1 pseudo_consens +32133 chr18 HAVANA gene 60519841 60520165 325.0 + 0 ENSG00000266915.1 processed_pseudogene MRPS5P4 1 OTTHUMG00000179958.1 pseudo_consens +32134 chr18 HAVANA gene 60525616 60526156 541.0 - 0 ENSG00000267687.1 processed_pseudogene AC010928.3 1 OTTHUMG00000180043.1 pseudo_consens +32135 chr18 HAVANA gene 60329233 60538595 634.0 + 0 ENSG00000285681.1 antisense AC091576.1 2 OTTHUMG00000192983.1 +32136 chr18 HAVANA gene 60611773 60654623 1692.0 + 0 ENSG00000267382.1 transcribed_unprocessed_pseudogene AC010928.1 2 OTTHUMG00000179959.1 +32137 chr18 HAVANA gene 60663115 60664369 1255.0 + 0 ENSG00000267153.1 processed_pseudogene CTBP2P3 1 OTTHUMG00000179961.1 pseudo_consens +32138 chr18 HAVANA gene 60794613 60794916 304.0 - 0 ENSG00000267513.3 processed_pseudogene HMGN1P31 1 OTTHUMG00000180044.1 pseudo_consens,overlapping_locus +32139 chr18 HAVANA gene 60630167 60902726 558.0 - 0 ENSG00000267098.1 lincRNA AC113137.1 2 OTTHUMG00000179960.1 overlapping_locus +32140 chr18 ENSEMBL gene 61391595 61391703 109.0 + 0 ENSG00000206769.1 snRNA RNU6-116P 3 +32141 chr18 HAVANA gene 61404858 61405205 348.0 - 0 ENSG00000243256.1 processed_pseudogene RPL30P14 1 OTTHUMG00000158258.1 pseudo_consens +32142 chr18 HAVANA gene 61333582 61555773 4119.0 + 0 ENSG00000101542.9 protein_coding CDH20 2 OTTHUMG00000132768.3 ncRNA_host +32143 chr18 HAVANA gene 61571342 61579456 610.0 - 0 ENSG00000267316.5 lincRNA AC090409.2 2 OTTHUMG00000180045.1 +32144 chr18 HAVANA gene 61585746 61606916 1199.0 - 0 ENSG00000267279.1 lincRNA AC090409.1 2 OTTHUMG00000180046.1 overlapping_locus +32145 chr18 HAVANA gene 61681653 61682695 316.0 + 0 ENSG00000267038.1 lincRNA AC105094.1 2 OTTHUMG00000180047.1 +32146 chr18 HAVANA gene 61592375 61748832 1156.0 - 0 ENSG00000267175.5 lincRNA AC105094.2 2 OTTHUMG00000180734.1 overlapping_locus +32147 chr18 HAVANA gene 61748176 61756646 5168.0 + 0 ENSG00000260440.2 lincRNA LINC01544 2 OTTHUMG00000176195.2 +32148 chr18 HAVANA gene 61808063 61894247 10632.0 - 0 ENSG00000176641.10 protein_coding RNF152 1 OTTHUMG00000132774.5 +32149 chr18 HAVANA gene 61957273 61958014 742.0 - 0 ENSG00000267597.1 processed_pseudogene RPIAP1 1 OTTHUMG00000180097.1 pseudo_consens +32150 chr18 HAVANA gene 61905255 62187118 19003.0 - 0 ENSG00000197563.10 protein_coding PIGN 1 OTTHUMG00000180098.20 +32151 chr18 HAVANA gene 62245810 62247412 1603.0 + 0 ENSG00000266900.1 sense_intronic AC027514.1 2 OTTHUMG00000180171.1 overlapping_locus +32152 chr18 HAVANA gene 62300036 62300998 637.0 - 0 ENSG00000267560.1 antisense AC027514.2 2 OTTHUMG00000180154.1 +32153 chr18 HAVANA gene 62187255 62310217 10690.0 + 0 ENSG00000134444.14 protein_coding RELCH 2 OTTHUMG00000132780.6 overlapping_locus +32154 chr18 ENSEMBL gene 62330812 62330913 102.0 + 0 ENSG00000199867.1 misc_RNA RF00019 3 +32155 chr18 HAVANA gene 62372894 62378130 324.0 - 0 ENSG00000267341.1 antisense AC100843.1 2 OTTHUMG00000180155.1 +32156 chr18 HAVANA gene 62325287 62391292 8999.0 + 0 ENSG00000141655.16 protein_coding TNFRSF11A 2 OTTHUMG00000132779.3 ncRNA_host +32157 chr18 HAVANA gene 62415678 62416227 550.0 + 0 ENSG00000241088.2 processed_pseudogene RPL17P44 1 OTTHUMG00000158260.2 pseudo_consens +32158 chr18 HAVANA gene 62418318 62418576 259.0 + 0 ENSG00000267487.1 processed_pseudogene AC100843.2 1 OTTHUMG00000180163.1 pseudo_consens +32159 chr18 HAVANA gene 62442028 62443126 1099.0 + 0 ENSG00000266920.1 processed_pseudogene ACTBP9 1 OTTHUMG00000180164.1 pseudo_consens +32160 chr18 HAVANA gene 62525919 62526325 407.0 - 0 ENSG00000278017.1 antisense AC064801.1 2 OTTHUMG00000186660.1 +32161 chr18 HAVANA gene 62551203 62552505 1303.0 + 0 ENSG00000279236.1 TEC AC064801.2 2 OTTHUMG00000180166.1 overlapping_locus +32162 chr18 HAVANA gene 62523007 62587709 10235.0 + 0 ENSG00000141664.9 protein_coding ZCCHC2 2 OTTHUMG00000180165.2 overlapping_locus +32163 chr18 ENSEMBL gene 62650308 62650601 294.0 - 0 ENSG00000243549.3 misc_RNA RN7SL705P 3 +32164 chr18 ENSEMBL gene 62731226 62731332 107.0 - 0 ENSG00000206746.1 snRNA RNU6-142P 3 +32165 chr18 HAVANA gene 62715450 62980433 9142.0 + 0 ENSG00000081913.13 protein_coding PHLPP1 1 OTTHUMG00000150629.3 +32166 chr18 HAVANA gene 63151114 63151320 207.0 - 0 ENSG00000267766.1 sense_intronic AC022726.1 2 OTTHUMG00000180157.2 overlapping_locus +32167 chr18 HAVANA gene 63207622 63208168 547.0 + 0 ENSG00000283125.1 antisense AC022726.2 2 OTTHUMG00000191478.1 +32168 chr18 HAVANA gene 63123346 63320128 11765.0 - 0 ENSG00000171791.12 protein_coding BCL2 2 OTTHUMG00000132791.4 overlapping_locus +32169 chr18 HAVANA gene 63327726 63367510 9287.0 - 0 ENSG00000119537.17 protein_coding KDSR 2 OTTHUMG00000132792.9 +32170 chr18 HAVANA gene 63367328 63381629 785.0 + 0 ENSG00000267390.1 antisense AC036176.1 2 OTTHUMG00000180139.1 +32171 chr18 HAVANA gene 63415317 63416469 1153.0 - 0 ENSG00000267430.1 processed_pseudogene AC036176.2 1 OTTHUMG00000180140.1 pseudo_consens,overlapping_locus +32172 chr18 HAVANA gene 63389190 63422483 4315.0 - 0 ENSG00000119541.9 protein_coding VPS4B 2 OTTHUMG00000132790.4 overlapping_locus +32173 chr18 HAVANA gene 63485601 63486018 418.0 + 0 ENSG00000269989.1 sense_intronic AC036176.3 2 OTTHUMG00000184064.1 overlapping_locus +32174 chr18 HAVANA gene 63496989 63497400 412.0 + 0 ENSG00000214318.3 processed_pseudogene ATP5MC1P6 1 OTTHUMG00000141308.1 pseudo_consens,overlapping_locus +32175 chr18 HAVANA gene 63476761 63505085 3939.0 + 0 ENSG00000206075.13 protein_coding SERPINB5 2 OTTHUMG00000141307.5 overlapping_locus +32176 chr18 HAVANA gene 63556160 63567011 1278.0 + 0 ENSG00000166634.6 protein_coding SERPINB12 1 OTTHUMG00000132789.3 +32177 chr18 HAVANA gene 63586989 63604639 4535.0 + 0 ENSG00000197641.11 protein_coding SERPINB13 2 OTTHUMG00000060406.6 +32178 chr18 HAVANA gene 63637259 63644298 2013.0 - 0 ENSG00000206073.10 protein_coding SERPINB4 2 OTTHUMG00000060405.4 +32179 chr18 HAVANA gene 63655197 63661963 1777.0 - 0 ENSG00000057149.15 protein_coding SERPINB3 2 OTTHUMG00000060403.2 +32180 chr18 HAVANA gene 63647579 63726432 3696.0 + 0 ENSG00000206072.12 protein_coding SERPINB11 2 OTTHUMG00000060404.10 +32181 chr18 HAVANA gene 63752935 63805376 2637.0 + 0 ENSG00000166396.12 protein_coding SERPINB7 2 OTTHUMG00000060591.4 +32182 chr18 HAVANA gene 63871692 63903890 2748.0 + 0 ENSG00000197632.8 protein_coding SERPINB2 2 OTTHUMG00000060592.4 overlapping_locus +32183 chr18 HAVANA gene 63897174 63936111 2700.0 + 0 ENSG00000242550.5 protein_coding SERPINB10 2 OTTHUMG00000060594.6 overlapping_locus +32184 chr18 HAVANA gene 63966406 63970181 1609.0 - 0 ENSG00000283667.1 antisense AC009802.1 2 OTTHUMG00000191685.1 +32185 chr18 HAVANA gene 63949301 63981774 2920.0 + 0 ENSG00000221887.5 protein_coding HMSD 1 OTTHUMG00000060593.7 overlapping_locus +32186 chr18 HAVANA gene 63969925 64019779 5868.0 + 0 ENSG00000166401.14 protein_coding SERPINB8 1 OTTHUMG00000060596.8 overlapping_locus +32187 chr18 HAVANA gene 64072158 64072653 496.0 + 0 ENSG00000237314.2 transcribed_processed_pseudogene RPL12P39 1 OTTHUMG00000060595.3 pseudo_consens,overlapping_locus +32188 chr18 HAVANA gene 64080009 64149030 1035.0 - 0 ENSG00000179676.6 lincRNA LINC00305 2 OTTHUMG00000060637.2 +32189 chr18 HAVANA gene 64181314 64260055 3153.0 - 0 ENSG00000266952.2 lincRNA LINC01538 2 OTTHUMG00000180127.2 +32190 chr18 HAVANA gene 64041555 64423601 3261.0 + 0 ENSG00000267134.2 lincRNA LINC01924 2 OTTHUMG00000060638.3 overlapping_locus +32191 chr18 HAVANA gene 64677796 64677993 198.0 - 0 ENSG00000275448.1 processed_pseudogene AC027506.1 1 OTTHUMG00000187949.1 pseudo_consens +32192 chr18 HAVANA gene 65105873 65125710 242.0 - 0 ENSG00000263863.1 lincRNA AC007948.1 2 OTTHUMG00000178486.1 +32193 chr18 HAVANA gene 65186159 65187018 189.0 + 0 ENSG00000264131.1 lincRNA AC007631.1 2 OTTHUMG00000178487.1 +32194 chr18 HAVANA gene 65424013 65447512 559.0 + 0 ENSG00000264232.1 lincRNA LINC01916 2 OTTHUMG00000178488.1 +32195 chr18 HAVANA gene 65606090 65652053 852.0 + 0 ENSG00000265217.1 lincRNA AC090358.1 2 OTTHUMG00000178489.1 +32196 chr18 HAVANA gene 65865262 65866397 792.0 + 0 ENSG00000263720.1 sense_intronic AC023394.2 2 OTTHUMG00000178494.1 overlapping_locus +32197 chr18 HAVANA gene 65750252 65890341 14532.0 + 0 ENSG00000081138.13 protein_coding CDH7 2 OTTHUMG00000132800.3 overlapping_locus +32198 chr18 HAVANA gene 65917782 65920942 312.0 - 0 ENSG00000263622.1 lincRNA AC023394.1 2 OTTHUMG00000178496.1 +32199 chr18 HAVANA gene 66068750 66069647 898.0 - 0 ENSG00000264685.1 processed_pseudogene PRPF19P1 1 OTTHUMG00000178514.1 pseudo_consens +32200 chr18 HAVANA gene 66501083 66604138 6864.0 - 0 ENSG00000071991.8 protein_coding CDH19 1 OTTHUMG00000132802.3 +32201 chr18 ENSEMBL gene 66946116 66946222 107.0 + 0 ENSG00000238680.1 snRNA RNU6-1037P 3 +32202 chr18 ENSEMBL gene 67081584 67081686 103.0 + 0 ENSG00000263354.1 miRNA MIR5011 3 +32203 chr18 HAVANA gene 67137611 67137751 141.0 - 0 ENSG00000264054.1 processed_pseudogene RPL31P9 2 OTTHUMG00000178515.1 +32204 chr18 HAVANA gene 67375133 67375305 173.0 + 0 ENSG00000265936.1 processed_pseudogene AC091042.1 2 OTTHUMG00000178536.1 +32205 chr18 HAVANA gene 67481791 67484966 3176.0 - 0 ENSG00000260578.1 lincRNA AC110597.1 2 OTTHUMG00000176196.1 +32206 chr18 HAVANA gene 67506589 67514030 3305.0 + 0 ENSG00000263424.1 antisense AC110597.3 2 OTTHUMG00000178537.1 +32207 chr18 HAVANA gene 67506582 67516980 9531.0 - 0 ENSG00000171451.13 protein_coding DSEL 2 OTTHUMG00000132804.2 retrogene +32208 chr18 HAVANA gene 67602692 67603022 331.0 - 0 ENSG00000264040.1 processed_pseudogene AC022662.1 2 OTTHUMG00000178539.1 +32209 chr18 HAVANA gene 67672221 67676078 288.0 - 0 ENSG00000263594.1 lincRNA AC022655.1 2 OTTHUMG00000178540.1 +32210 chr18 HAVANA gene 67707929 67708246 318.0 - 0 ENSG00000265472.1 processed_pseudogene AC022655.2 1 OTTHUMG00000178541.1 pseudo_consens +32211 chr18 HAVANA gene 67788268 67791035 2484.0 - 0 ENSG00000264104.1 processed_pseudogene AC114689.1 1 OTTHUMG00000178542.1 pseudo_consens +32212 chr18 HAVANA gene 67808505 67814822 2149.0 - 0 ENSG00000265555.1 lincRNA LINC01903 2 OTTHUMG00000178543.1 +32213 chr18 HAVANA gene 67830671 67831967 1297.0 - 0 ENSG00000265240.1 processed_pseudogene AC114689.2 1 OTTHUMG00000178544.1 pseudo_consens +32214 chr18 HAVANA gene 67516546 67899619 2991.0 + 0 ENSG00000265533.1 lincRNA AC114689.3 2 OTTHUMG00000178538.1 +32215 chr18 HAVANA gene 67940949 67956426 440.0 + 0 ENSG00000264634.1 lincRNA AC100844.1 2 OTTHUMG00000178545.1 +32216 chr18 HAVANA gene 68102116 68114377 346.0 + 0 ENSG00000264869.1 lincRNA AC068112.1 2 OTTHUMG00000178546.1 +32217 chr18 HAVANA gene 68258339 68264827 496.0 - 0 ENSG00000264699.1 lincRNA LINC01912 2 OTTHUMG00000178547.1 +32218 chr18 HAVANA gene 68277802 68278243 442.0 - 0 ENSG00000260747.1 processed_pseudogene AC022968.1 1 OTTHUMG00000177069.1 pseudo_consens +32219 chr18 HAVANA gene 68427030 68436918 755.0 + 0 ENSG00000265425.1 lincRNA AC005909.1 2 OTTHUMG00000178548.1 +32220 chr18 HAVANA gene 68455951 68456877 927.0 + 0 ENSG00000263355.1 processed_pseudogene AKR1B10P2 1 OTTHUMG00000178549.1 pseudo_consens +32221 chr18 HAVANA gene 68527970 68528123 154.0 + 0 ENSG00000264697.1 processed_pseudogene AC067819.1 2 OTTHUMG00000178550.1 +32222 chr18 HAVANA gene 68673688 68715298 7637.0 - 0 ENSG00000166479.9 protein_coding TMX3 2 OTTHUMG00000172713.3 +32223 chr18 HAVANA gene 68721082 68721560 479.0 + 0 ENSG00000276092.1 sense_intronic AC040896.1 2 OTTHUMG00000186668.1 overlapping_locus +32224 chr18 HAVANA gene 68753179 68754583 302.0 - 0 ENSG00000263637.1 antisense AC022035.1 2 OTTHUMG00000178551.1 +32225 chr18 ENSEMBL gene 68858934 68859040 107.0 + 0 ENSG00000207072.1 snRNA RNU6-39P 3 +32226 chr18 HAVANA gene 68866517 68867028 512.0 + 0 ENSG00000264444.1 processed_pseudogene SDHCP1 1 OTTHUMG00000178552.1 pseudo_consens,overlapping_locus +32227 chr18 HAVANA gene 68899781 68902255 559.0 - 0 ENSG00000264472.4 antisense AC096708.2 2 OTTHUMG00000178553.1 +32228 chr18 HAVANA gene 68908048 68908599 552.0 + 0 ENSG00000273584.1 sense_intronic AC096708.3 2 OTTHUMG00000186669.1 overlapping_locus +32229 chr18 HAVANA gene 68992718 68993375 658.0 - 0 ENSG00000264236.1 processed_pseudogene AC096708.1 1 OTTHUMG00000178554.1 pseudo_consens +32230 chr18 HAVANA gene 68715209 69055189 5805.0 + 0 ENSG00000150636.17 protein_coding CCDC102B 1 OTTHUMG00000132808.5 ncRNA_host,overlapping_locus +32231 chr18 HAVANA gene 69212277 69214350 2074.0 + 0 ENSG00000264705.1 lincRNA AC090337.1 2 OTTHUMG00000178555.1 +32232 chr18 HAVANA gene 69240448 69250781 3249.0 - 0 ENSG00000285748.1 lincRNA AC090337.2 2 OTTHUMG00000193001.1 +32233 chr18 HAVANA gene 69398726 69399249 524.0 - 0 ENSG00000278532.1 lincRNA AC026585.1 2 OTTHUMG00000186670.1 +32234 chr18 HAVANA gene 69469517 69471736 612.0 + 0 ENSG00000264845.2 transcribed_processed_pseudogene AC119868.1 2 OTTHUMG00000178689.2 overlapping_locus +32235 chr18 HAVANA gene 69483627 69618694 432.0 - 0 ENSG00000265643.1 antisense AC119868.2 2 OTTHUMG00000178690.1 +32236 chr18 HAVANA gene 69659837 69663413 3577.0 + 0 ENSG00000279221.1 TEC AC068254.2 2 OTTHUMG00000178691.1 overlapping_locus +32237 chr18 HAVANA gene 69704978 69724975 483.0 - 0 ENSG00000266840.1 antisense AC068254.1 2 OTTHUMG00000178692.1 +32238 chr18 HAVANA gene 69401055 69849087 9387.0 + 0 ENSG00000206052.10 protein_coding DOK6 2 OTTHUMG00000178688.1 overlapping_locus +32239 chr18 HAVANA gene 69831158 69961803 13638.0 - 0 ENSG00000150637.8 protein_coding CD226 2 OTTHUMG00000132809.5 +32240 chr18 HAVANA gene 70003031 70205945 19323.0 - 0 ENSG00000176225.13 protein_coding RTTN 2 OTTHUMG00000178694.5 +32241 chr18 HAVANA gene 70288901 70330200 5984.0 + 0 ENSG00000170677.5 protein_coding SOCS6 2 OTTHUMG00000132816.4 +32242 chr18 HAVANA gene 70335929 70337310 384.0 - 0 ENSG00000266304.1 lincRNA LIVAR 2 OTTHUMG00000178698.1 +32243 chr18 HAVANA gene 70335439 70352459 1040.0 + 0 ENSG00000266258.1 lincRNA LINC01909 1 OTTHUMG00000178695.1 +32244 chr18 HAVANA gene 70380140 70384591 2637.0 - 0 ENSG00000266278.1 lincRNA LINC01910 2 OTTHUMG00000178696.1 +32245 chr18 HAVANA gene 70412055 70412391 337.0 + 0 ENSG00000265698.1 processed_pseudogene LARP7P3 1 OTTHUMG00000178697.1 pseudo_consens +32246 chr18 HAVANA gene 70430231 70431125 895.0 + 0 ENSG00000214255.5 processed_pseudogene RPS2P6 1 OTTHUMG00000158263.1 pseudo_consens +32247 chr18 HAVANA gene 70489630 70491205 1576.0 + 0 ENSG00000278971.1 TEC AC091305.1 2 OTTHUMG00000178786.1 +32248 chr18 ENSEMBL gene 70512727 70513008 282.0 + 0 ENSG00000239748.3 misc_RNA RN7SL795P 3 +32249 chr18 HAVANA gene 70630534 70650744 470.0 - 0 ENSG00000263417.4 lincRNA GTSCR1 1 OTTHUMG00000178787.2 +32250 chr18 HAVANA gene 71000477 71011490 374.0 - 0 ENSG00000265781.1 lincRNA AC090415.2 2 OTTHUMG00000178788.1 +32251 chr18 HAVANA gene 71028770 71033056 847.0 + 0 ENSG00000265639.1 processed_pseudogene AC090415.1 1 OTTHUMG00000178789.1 pseudo_consens +32252 chr18 HAVANA gene 71225704 71226721 1018.0 + 0 ENSG00000263733.1 processed_pseudogene AC091691.1 1 OTTHUMG00000178791.1 pseudo_consens +32253 chr18 HAVANA gene 71216704 71237102 567.0 - 0 ENSG00000265484.1 lincRNA AC091691.2 2 OTTHUMG00000178790.1 +32254 chr18 HAVANA gene 71519962 71578956 3105.0 - 0 ENSG00000260676.5 lincRNA LINC01541 2 OTTHUMG00000176200.2 +32255 chr18 HAVANA gene 71588537 71588884 348.0 + 0 ENSG00000264388.1 processed_pseudogene AC090312.1 1 OTTHUMG00000178792.1 pseudo_consens +32256 chr18 HAVANA gene 71665148 71665525 378.0 + 0 ENSG00000265946.1 processed_pseudogene AC090312.2 1 OTTHUMG00000178793.1 pseudo_consens +32257 chr18 HAVANA gene 71732615 71788128 1101.0 - 0 ENSG00000265352.1 lincRNA LINC01899 1 OTTHUMG00000178794.1 +32258 chr18 HAVANA gene 71837039 71870788 613.0 + 0 ENSG00000260457.2 lincRNA AC027458.1 2 OTTHUMG00000176204.2 +32259 chr18 HAVANA gene 71932493 71932796 304.0 + 0 ENSG00000271313.1 processed_pseudogene AC069114.2 2 OTTHUMG00000184853.1 +32260 chr18 HAVANA gene 71890409 71944577 287.0 - 0 ENSG00000265995.1 lincRNA AC069114.1 2 OTTHUMG00000178795.1 +32261 chr18 HAVANA gene 72618267 72619222 956.0 + 0 ENSG00000264315.1 processed_pseudogene HNRNPA1P11 1 OTTHUMG00000178796.1 pseudo_consens +32262 chr18 HAVANA gene 72536680 72638521 5593.0 - 0 ENSG00000141668.9 protein_coding CBLN2 1 OTTHUMG00000132825.2 +32263 chr18 HAVANA gene 72743756 72745961 2206.0 - 0 ENSG00000265579.1 sense_intronic AC023301.1 2 OTTHUMG00000178982.1 overlapping_locus +32264 chr18 ENSEMBL gene 72751952 72752051 100.0 + 0 ENSG00000252598.1 rRNA_pseudogene RNA5SP460 3 +32265 chr18 ENSEMBL gene 72853321 72853382 62.0 - 0 ENSG00000263750.1 miRNA MIR548AV 3 +32266 chr18 HAVANA gene 72742314 72868146 5509.0 - 0 ENSG00000166342.18 protein_coding NETO1 2 OTTHUMG00000132834.5 ncRNA_host,overlapping_locus +32267 chr18 HAVANA gene 72868388 72881399 534.0 + 0 ENSG00000263958.1 lincRNA AC091138.1 2 OTTHUMG00000178983.1 +32268 chr18 HAVANA gene 73151241 73264480 6856.0 - 0 ENSG00000263711.5 processed_transcript AC079062.1 1 OTTHUMG00000178984.2 +32269 chr18 HAVANA gene 73324941 73349878 2275.0 + 0 ENSG00000261780.2 processed_transcript LINC02582 2 OTTHUMG00000176206.2 +32270 chr18 HAVANA gene 73711329 73715490 555.0 - 0 ENSG00000265380.1 lincRNA AC079070.1 2 OTTHUMG00000178985.1 +32271 chr18 ENSEMBL gene 73744935 73745232 298.0 + 0 ENSG00000241866.3 misc_RNA RN7SL401P 3 +32272 chr18 HAVANA gene 73921939 73922631 693.0 - 0 ENSG00000278902.1 TEC AC010947.1 2 OTTHUMG00000176207.1 overlapping_locus +32273 chr18 HAVANA gene 73914405 74034161 493.0 - 0 ENSG00000263655.1 lincRNA AC090125.1 2 OTTHUMG00000178986.1 overlapping_locus +32274 chr18 HAVANA gene 74073353 74147865 6198.0 - 0 ENSG00000141665.12 protein_coding FBXO15 1 OTTHUMG00000132842.6 +32275 chr18 HAVANA gene 74148511 74160530 5208.0 + 0 ENSG00000075336.11 protein_coding TIMM21 2 OTTHUMG00000132844.3 +32276 chr18 ENSEMBL gene 74227506 74227803 298.0 + 0 ENSG00000243856.3 misc_RNA RN7SL551P 3 +32277 chr18 HAVANA gene 74211391 74240555 1463.0 - 0 ENSG00000260569.2 lincRNA AC090398.1 2 OTTHUMG00000176208.2 +32278 chr18 HAVANA gene 74250847 74292016 9313.0 - 0 ENSG00000166347.18 protein_coding CYB5A 1 OTTHUMG00000132843.5 +32279 chr18 HAVANA gene 74315813 74359187 5127.0 + 0 ENSG00000206043.6 protein_coding C18orf63 2 OTTHUMG00000178987.2 +32280 chr18 HAVANA gene 74389884 74390297 414.0 - 0 ENSG00000235297.3 processed_pseudogene FAUP1 1 OTTHUMG00000158397.1 pseudo_consens +32281 chr18 HAVANA gene 74409415 74413209 2339.0 + 0 ENSG00000259779.1 lincRNA LINC01922 2 OTTHUMG00000176209.1 +32282 chr18 HAVANA gene 74434099 74457944 3843.0 - 0 ENSG00000187773.8 protein_coding FAM69C 2 OTTHUMG00000156984.3 +32283 chr18 HAVANA gene 74504766 74505248 483.0 + 0 ENSG00000276934.1 sense_intronic AC009704.2 2 OTTHUMG00000186672.1 overlapping_locus +32284 chr18 HAVANA gene 74495816 74523454 11848.0 + 0 ENSG00000133313.14 protein_coding CNDP2 1 OTTHUMG00000132853.5 overlapping_locus +32285 chr18 HAVANA gene 74561381 74562100 331.0 - 0 ENSG00000264340.1 antisense AC009704.1 2 OTTHUMG00000179120.1 +32286 chr18 HAVANA gene 74534440 74587212 7177.0 + 0 ENSG00000150656.14 protein_coding CNDP1 1 OTTHUMG00000132852.4 +32287 chr18 HAVANA gene 74591774 74598508 3742.0 - 0 ENSG00000264247.1 lincRNA LINC00909 2 OTTHUMG00000179121.1 +32288 chr18 HAVANA gene 74597870 75065671 12190.0 + 0 ENSG00000215421.9 protein_coding ZNF407 1 OTTHUMG00000179122.3 +32289 chr18 HAVANA gene 75070197 75071091 555.0 - 0 ENSG00000278607.1 lincRNA AC015819.2 2 OTTHUMG00000186676.1 +32290 chr18 HAVANA gene 75073543 75074205 663.0 + 0 ENSG00000273669.1 lincRNA AC015819.1 2 OTTHUMG00000186678.1 +32291 chr18 ENSEMBL gene 75086368 75086514 147.0 + 0 ENSG00000283452.1 sRNA RF01699 3 +32292 chr18 HAVANA gene 75103587 75106260 2674.0 - 0 ENSG00000278911.1 processed_transcript AC015819.3 2 OTTHUMG00000179124.3 +32293 chr18 HAVANA gene 75112137 75125565 779.0 - 0 ENSG00000285915.1 lincRNA AC015819.4 2 OTTHUMG00000193047.1 +32294 chr18 HAVANA gene 75195108 75209348 8157.0 - 0 ENSG00000180011.6 protein_coding ZADH2 1 OTTHUMG00000132858.3 +32295 chr18 HAVANA gene 75210755 75289950 8281.0 + 0 ENSG00000179981.10 protein_coding TSHZ1 2 OTTHUMG00000132859.6 +32296 chr18 HAVANA gene 75387056 75387596 541.0 + 0 ENSG00000276993.1 lincRNA AC116003.3 2 OTTHUMG00000186679.1 +32297 chr18 HAVANA gene 75407012 75426607 2506.0 + 0 ENSG00000264116.5 antisense AC116003.1 1 OTTHUMG00000179125.2 +32298 chr18 HAVANA gene 75409476 75427703 4009.0 - 0 ENSG00000206026.7 protein_coding SMIM21 1 OTTHUMG00000179126.1 +32299 chr18 HAVANA gene 75432703 75436957 748.0 - 0 ENSG00000266774.1 lincRNA AC116003.2 2 OTTHUMG00000179127.1 +32300 chr18 HAVANA gene 75696079 75712385 1903.0 - 0 ENSG00000261194.1 lincRNA LINC01898 2 OTTHUMG00000176210.1 +32301 chr18 HAVANA gene 75844925 75868252 597.0 - 0 ENSG00000266460.1 lincRNA AC021506.1 2 OTTHUMG00000179128.1 +32302 chr18 HAVANA gene 75927836 75928004 169.0 + 0 ENSG00000275827.1 processed_pseudogene AC021506.2 2 OTTHUMG00000188036.1 +32303 chr18 HAVANA gene 76008118 76015861 211.0 - 0 ENSG00000264108.1 lincRNA AC090457.1 2 OTTHUMG00000179129.1 +32304 chr18 HAVANA gene 76122998 76145255 2936.0 + 0 ENSG00000263547.1 processed_transcript AC011095.1 2 OTTHUMG00000179130.1 +32305 chr18 HAVANA gene 76173304 76177738 464.0 - 0 ENSG00000266743.1 lincRNA AC103808.6 2 OTTHUMG00000179131.1 +32306 chr18 HAVANA gene 76209510 76215702 479.0 + 0 ENSG00000264260.1 lincRNA LINC01893 2 OTTHUMG00000179132.2 +32307 chr18 HAVANA gene 76227990 76233387 594.0 - 0 ENSG00000264595.1 lincRNA AC103808.2 2 OTTHUMG00000179133.1 +32308 chr18 HAVANA gene 76247725 76251388 391.0 + 0 ENSG00000266014.1 lincRNA AC103808.4 2 OTTHUMG00000179134.1 +32309 chr18 HAVANA gene 76254292 76255214 598.0 - 0 ENSG00000265717.1 lincRNA AC103808.3 2 OTTHUMG00000179135.1 +32310 chr18 HAVANA gene 76256891 76258337 922.0 + 0 ENSG00000264212.1 lincRNA AC103808.1 2 OTTHUMG00000179136.1 +32311 chr18 HAVANA gene 76259166 76260114 462.0 + 0 ENSG00000266614.1 lincRNA AC103808.5 1 OTTHUMG00000179137.1 +32312 chr18 HAVANA gene 76372717 76378275 398.0 + 0 ENSG00000263982.1 antisense AC009716.1 2 OTTHUMG00000179138.1 +32313 chr18 HAVANA gene 76385642 76389406 3765.0 - 0 ENSG00000280205.1 TEC AC009716.2 2 OTTHUMG00000179139.1 overlapping_locus +32314 chr18 HAVANA gene 76491652 76493918 1393.0 + 0 ENSG00000265778.2 antisense AC018413.1 2 OTTHUMG00000179140.2 +32315 chr18 HAVANA gene 76358190 76495190 8217.0 - 0 ENSG00000101493.10 protein_coding ZNF516 1 OTTHUMG00000165995.6 overlapping_locus +32316 chr18 HAVANA gene 76495521 76498088 2076.0 + 0 ENSG00000275763.3 lincRNA C18orf65 2 OTTHUMG00000165996.5 +32317 chr18 HAVANA gene 76528655 76610968 3036.0 + 0 ENSG00000263812.5 lincRNA LINC00908 1 OTTHUMG00000179141.2 +32318 chr18 HAVANA gene 76615212 76625940 4928.0 + 0 ENSG00000266256.1 lincRNA LINC00683 2 OTTHUMG00000179274.2 +32319 chr18 HAVANA gene 76623006 76639011 712.0 - 0 ENSG00000266312.1 lincRNA LINC01927 2 OTTHUMG00000179326.1 +32320 chr18 HAVANA gene 76690029 76693636 2338.0 + 0 ENSG00000276397.1 lincRNA LINC01879 2 OTTHUMG00000132860.4 +32321 chr18 HAVANA gene 76703444 76704254 478.0 - 0 ENSG00000265934.1 processed_pseudogene ARL2BPP1 1 OTTHUMG00000179327.1 pseudo_consens +32322 chr18 HAVANA gene 76751305 76751841 537.0 + 0 ENSG00000265836.1 processed_pseudogene CCND3P2 1 OTTHUMG00000179328.1 pseudo_consens +32323 chr18 HAVANA gene 76759685 76759866 182.0 - 0 ENSG00000265626.1 processed_pseudogene AC139085.1 2 OTTHUMG00000179329.1 +32324 chr18 ENSEMBL gene 76800664 76800774 111.0 - 0 ENSG00000252097.1 snRNA RNU6-346P 3 +32325 chr18 HAVANA gene 76805151 76805736 586.0 - 0 ENSG00000278107.1 lincRNA AC027575.2 2 OTTHUMG00000186681.1 overlapping_locus +32326 chr18 HAVANA gene 76794732 76822295 1295.0 - 0 ENSG00000264278.1 lincRNA ZNF236-DT 2 OTTHUMG00000179330.1 ncRNA_host,overlapping_locus +32327 chr18 HAVANA gene 76834429 76834888 460.0 - 0 ENSG00000244229.1 processed_pseudogene RPL26P35 1 OTTHUMG00000158266.1 pseudo_consens +32328 chr18 ENSEMBL gene 76840838 76841102 265.0 - 0 ENSG00000275355.1 misc_RNA RF00017 3 +32329 chr18 HAVANA gene 76884935 76888724 2747.0 - 0 ENSG00000265261.1 processed_pseudogene AC027575.1 1 OTTHUMG00000179332.1 pseudo_consens +32330 chr18 HAVANA gene 76822607 76970727 8764.0 + 0 ENSG00000130856.16 protein_coding ZNF236 2 OTTHUMG00000179331.3 +32331 chr18 HAVANA gene 76974690 76984162 2478.0 + 0 ENSG00000266844.1 antisense AC093330.1 2 OTTHUMG00000179333.1 +32332 chr18 HAVANA gene 77002849 77006846 3998.0 - 0 ENSG00000279811.1 TEC AC093330.2 2 OTTHUMG00000179334.1 overlapping_locus +32333 chr18 HAVANA gene 77093086 77093446 361.0 + 0 ENSG00000275178.1 antisense AC018529.1 2 OTTHUMG00000186682.2 +32334 chr18 HAVANA gene 77108284 77110537 2254.0 - 0 ENSG00000279433.1 TEC AC018529.3 2 OTTHUMG00000179335.1 overlapping_locus +32335 chr18 HAVANA gene 77112602 77115726 3125.0 + 0 ENSG00000278330.1 antisense AC018529.2 2 OTTHUMG00000186683.1 +32336 chr18 HAVANA gene 76978827 77133683 18615.0 - 0 ENSG00000197971.14 protein_coding MBP 1 OTTHUMG00000132874.8 overlapping_locus +32337 chr18 HAVANA gene 77180106 77235430 560.0 + 0 ENSG00000265844.1 lincRNA AC100863.1 2 OTTHUMG00000179337.1 +32338 chr18 HAVANA gene 77250549 77277896 10299.0 + 0 ENSG00000166573.5 protein_coding GALR1 2 OTTHUMG00000132875.3 +32339 chr18 ENSEMBL gene 77431563 77431689 127.0 - 0 ENSG00000199392.1 snoRNA RF00402 3 +32340 chr18 HAVANA gene 77435253 77437242 1990.0 - 0 ENSG00000264736.1 processed_pseudogene BDP1P 1 OTTHUMG00000179339.1 pseudo_consens +32341 chr18 HAVANA gene 77421619 77560763 562.0 + 0 ENSG00000264015.1 lincRNA AC124254.1 2 OTTHUMG00000179338.1 +32342 chr18 HAVANA gene 77622552 77624515 661.0 + 0 ENSG00000264693.1 lincRNA AC123786.1 2 OTTHUMG00000179340.1 +32343 chr18 HAVANA gene 77632928 77633360 275.0 - 0 ENSG00000271702.1 processed_pseudogene AC123786.2 1 OTTHUMG00000184869.1 pseudo_consens +32344 chr18 ENSEMBL gene 77863464 77863567 104.0 - 0 ENSG00000252260.1 rRNA_pseudogene RNA5SP461 3 +32345 chr18 HAVANA gene 77983020 77986610 788.0 - 0 ENSG00000264334.1 lincRNA AC134978.1 2 OTTHUMG00000179394.1 overlapping_locus +32346 chr18 HAVANA gene 77971294 77993722 2094.0 - 0 ENSG00000265843.2 lincRNA LINC01029 2 OTTHUMG00000179393.2 overlapping_locus +32347 chr18 ENSEMBL gene 78036739 78036845 107.0 + 0 ENSG00000199728.1 snRNA RNU6-655P 3 +32348 chr18 HAVANA gene 78137223 78140887 2727.0 + 0 ENSG00000266213.1 lincRNA AC107892.1 2 OTTHUMG00000179395.1 +32349 chr18 HAVANA gene 78480549 78484867 573.0 + 0 ENSG00000265644.1 lincRNA AC087399.1 2 OTTHUMG00000179396.1 +32350 chr18 HAVANA gene 78505165 78506410 397.0 + 0 ENSG00000265378.1 lincRNA AC012572.1 2 OTTHUMG00000179397.1 +32351 chr18 ENSEMBL gene 78544095 78544188 94.0 - 0 ENSG00000201723.2 misc_RNA RF00019 3 +32352 chr18 HAVANA gene 78795612 78796672 399.0 - 0 ENSG00000266273.1 lincRNA AC044873.1 2 OTTHUMG00000179398.1 +32353 chr18 HAVANA gene 78908629 78918993 179.0 - 0 ENSG00000266586.1 lincRNA AC091027.2 2 OTTHUMG00000179399.1 +32354 chr18 HAVANA gene 78925064 78927441 523.0 - 0 ENSG00000265101.1 lincRNA AC091027.1 2 OTTHUMG00000179400.1 +32355 chr18 HAVANA gene 78976555 78979074 1732.0 - 0 ENSG00000263146.2 lincRNA LINC01896 2 OTTHUMG00000178053.2 +32356 chr18 HAVANA gene 78980275 79002677 7397.0 + 0 ENSG00000256463.8 protein_coding SALL3 1 OTTHUMG00000132896.5 +32357 chr18 HAVANA gene 79085134 79086435 1302.0 + 0 ENSG00000279416.1 TEC AC099689.1 2 OTTHUMG00000180260.1 overlapping_locus +32358 chr18 HAVANA gene 79117207 79117920 714.0 + 0 ENSG00000267655.1 sense_intronic AC125437.1 2 OTTHUMG00000180261.1 overlapping_locus +32359 chr18 HAVANA gene 79144752 79146918 2167.0 + 0 ENSG00000279474.1 TEC AC125437.2 2 OTTHUMG00000180262.1 overlapping_locus +32360 chr18 HAVANA gene 79253577 79254856 728.0 - 0 ENSG00000267628.1 antisense AC104423.1 2 OTTHUMG00000180263.1 +32361 chr18 HAVANA gene 79340258 79343972 502.0 - 0 ENSG00000267015.1 antisense AC023090.1 2 OTTHUMG00000180264.1 +32362 chr18 HAVANA gene 79352458 79354567 2110.0 + 0 ENSG00000279077.1 TEC AC023090.2 2 OTTHUMG00000180265.1 overlapping_locus +32363 chr18 HAVANA gene 79069285 79378287 14934.0 + 0 ENSG00000166377.20 protein_coding ATP9B 1 OTTHUMG00000132898.6 overlapping_locus +32364 chr18 HAVANA gene 79420836 79422780 1945.0 + 0 ENSG00000279637.1 TEC AC018445.3 2 OTTHUMG00000180267.1 overlapping_locus +32365 chr18 HAVANA gene 79470120 79470940 568.0 - 0 ENSG00000275186.1 antisense AC018445.1 2 OTTHUMG00000186684.1 +32366 chr18 HAVANA gene 79496058 79498348 2291.0 + 0 ENSG00000279981.1 TEC AC018445.4 2 OTTHUMG00000180268.1 overlapping_locus +32367 chr18 HAVANA gene 79515798 79516057 260.0 - 0 ENSG00000279397.1 TEC AC018445.2 2 OTTHUMG00000187006.1 +32368 chr18 HAVANA gene 79395856 79529325 9068.0 + 0 ENSG00000131196.17 protein_coding NFATC1 1 OTTHUMG00000132897.5 overlapping_locus +32369 chr18 HAVANA gene 79576460 79589010 6158.0 + 0 ENSG00000267287.1 processed_transcript AC068473.3 2 OTTHUMG00000180269.1 +32370 chr18 HAVANA gene 79610747 79612303 585.0 + 0 ENSG00000267409.1 lincRNA AC068473.4 2 OTTHUMG00000180270.1 +32371 chr18 HAVANA gene 79677287 79679358 2072.0 - 0 ENSG00000274828.1 lincRNA AC068473.5 2 OTTHUMG00000186685.1 overlapping_locus +32372 chr18 HAVANA gene 79638928 79679745 1111.0 - 0 ENSG00000178412.4 lincRNA AC068473.1 2 OTTHUMG00000180271.2 overlapping_locus +32373 chr18 HAVANA gene 79702721 79703651 474.0 - 0 ENSG00000266901.1 antisense AC068473.2 2 OTTHUMG00000180273.1 +32374 chr18 HAVANA gene 79679801 79756623 7415.0 + 0 ENSG00000060069.16 protein_coding CTDP1 1 OTTHUMG00000132920.4 +32375 chr18 HAVANA gene 79787121 79791432 636.0 + 0 ENSG00000266924.1 lincRNA AC021594.1 2 OTTHUMG00000180297.1 +32376 chr18 HAVANA gene 79792726 79816529 527.0 + 0 ENSG00000267780.2 lincRNA AC021594.2 2 OTTHUMG00000180298.2 +32377 chr18 HAVANA gene 79863668 79900184 2162.0 + 0 ENSG00000178342.4 protein_coding KCNG2 1 OTTHUMG00000044541.3 +32378 chr18 HAVANA gene 79900555 79900903 349.0 - 0 ENSG00000278075.1 lincRNA AC114341.1 2 OTTHUMG00000186688.1 +32379 chr18 HAVANA gene 79902420 79951664 5225.0 - 0 ENSG00000122490.18 protein_coding PQLC1 1 OTTHUMG00000132921.6 +32380 chr18 HAVANA gene 79964561 79970822 2056.0 + 0 ENSG00000226742.3 protein_coding HSBP1L1 2 OTTHUMG00000180375.1 +32381 chr18 HAVANA gene 79970811 80033949 5231.0 - 0 ENSG00000141759.14 protein_coding TXNL4A 1 OTTHUMG00000180376.2 +32382 chr18 HAVANA gene 80034358 80046397 3722.0 + 0 ENSG00000101546.12 protein_coding RBFA 2 OTTHUMG00000132923.2 overlapping_locus +32383 chr18 HAVANA gene 80077707 80078259 553.0 + 0 ENSG00000266909.1 processed_pseudogene SLC25A6P4 1 OTTHUMG00000180378.1 pseudo_consens,overlapping_locus +32384 chr18 HAVANA gene 80046900 80095482 6623.0 + 0 ENSG00000261126.7 lincRNA RBFADN 2 OTTHUMG00000176254.3 overlapping_locus +32385 chr18 HAVANA gene 80034346 80097088 3902.0 + 0 ENSG00000267127.7 protein_coding AC090360.1 2 OTTHUMG00000180377.2 overlapping_locus +32386 chr18 HAVANA gene 80109031 80147523 5893.0 + 0 ENSG00000101544.8 protein_coding ADNP2 1 OTTHUMG00000172535.4 +32387 chr18 HAVANA gene 80161752 80162413 662.0 + 0 ENSG00000278000.1 sense_intronic AC139100.2 2 OTTHUMG00000186689.1 overlapping_locus +32388 chr18 HAVANA gene 80147924 80178432 4589.0 + 0 ENSG00000267270.5 antisense PARD6G-AS1 1 OTTHUMG00000180379.2 overlapping_locus +32389 chr18 HAVANA gene 80183680 80202992 2232.0 + 0 ENSG00000267251.2 antisense AC139100.1 2 OTTHUMG00000180380.2 +32390 chr18 HAVANA gene 80157232 80247546 4224.0 - 0 ENSG00000178184.15 protein_coding PARD6G 1 OTTHUMG00000132922.3 +32391 chr19 HAVANA gene 68403 69178 776.0 + 0 ENSG00000282542.1 TEC AC008993.1 2 OTTHUMG00000180450.4 +32392 chr19 HAVANA gene 69167 69972 806.0 + 0 ENSG00000282798.1 TEC AC008993.2 2 OTTHUMG00000190399.1 +32393 chr19 HAVANA gene 60951 71626 6331.0 - 0 ENSG00000282458.1 transcribed_processed_pseudogene WASH5P 2 OTTHUMG00000180466.8 +32394 chr19 ENSEMBL gene 71973 72110 138.0 + 0 ENSG00000283801.1 miRNA MIR1302-11 3 +32395 chr19 HAVANA gene 71778 72718 631.0 + 0 ENSG00000282807.3 lincRNA AC008993.3 2 OTTHUMG00000180451.3 ncRNA_host +32396 chr19 HAVANA gene 76163 77686 1285.0 - 0 ENSG00000282591.1 lincRNA FAM138F 2 OTTHUMG00000180467.4 +32397 chr19 HAVANA gene 94062 94974 913.0 + 0 ENSG00000282137.1 unprocessed_pseudogene OR4G3P 2 OTTHUMG00000180452.2 +32398 chr19 HAVANA gene 99175 106077 1788.0 + 0 ENSG00000267310.2 transcribed_unprocessed_pseudogene OR4G1P 2 OTTHUMG00000180453.2 +32399 chr19 HAVANA gene 107104 117102 3265.0 + 0 ENSG00000176695.8 protein_coding OR4F17 2 OTTHUMG00000180454.4 +32400 chr19 HAVANA gene 145485 145812 328.0 + 0 ENSG00000267792.1 processed_pseudogene WBP1LP11 1 OTTHUMG00000180455.1 pseudo_consens +32401 chr19 HAVANA gene 156279 157215 937.0 - 0 ENSG00000266971.1 unprocessed_pseudogene OR4F8P 2 OTTHUMG00000180456.1 +32402 chr19 HAVANA gene 176896 177913 1018.0 + 0 ENSG00000282535.1 lincRNA AC092192.1 2 OTTHUMG00000180458.2 +32403 chr19 HAVANA gene 193239 195595 2357.0 + 0 ENSG00000282059.1 processed_pseudogene CICP19 1 OTTHUMG00000180463.7 pseudo_consens,overlapping_locus +32404 chr19 HAVANA gene 186373 195696 634.0 - 0 ENSG00000281379.2 transcribed_unprocessed_pseudogene SEPT14P19 2 OTTHUMG00000180460.8 +32405 chr19 HAVANA gene 197310 198066 757.0 - 0 ENSG00000282416.1 processed_pseudogene AC092299.1 2 OTTHUMG00000190442.1 +32406 chr19 HAVANA gene 197961 200775 634.0 + 0 ENSG00000282051.1 transcribed_processed_pseudogene AC010507.1 2 OTTHUMG00000182072.3 +32407 chr19 HAVANA gene 200499 201174 676.0 - 0 ENSG00000282339.1 transcribed_processed_pseudogene AC010507.2 2 OTTHUMG00000190443.1 overlapping_locus +32408 chr19 ENSEMBL gene 223158 223261 104.0 - 0 ENSG00000222329.1 snRNA RNU6-1076P 3 +32409 chr19 HAVANA gene 198264 239440 7765.0 - 0 ENSG00000282508.1 processed_transcript LINC01002 2 OTTHUMG00000188608.4 ncRNA_host,overlapping_locus +32410 chr19 HAVANA gene 248551 251571 3021.0 - 0 ENSG00000282393.1 lincRNA AC016588.2 2 OTTHUMG00000187448.2 overlapping_locus +32411 chr19 HAVANA gene 281040 291504 7059.0 - 0 ENSG00000141934.9 protein_coding PLPP2 1 OTTHUMG00000180530.8 overlapping_locus +32412 chr19 HAVANA gene 305573 306467 542.0 + 0 ENSG00000267124.2 antisense AC016588.1 2 OTTHUMG00000180531.1 +32413 chr19 HAVANA gene 301444 344815 7939.0 - 0 ENSG00000105556.11 protein_coding MIER2 2 OTTHUMG00000180532.10 overlapping_locus +32414 chr19 HAVANA gene 361747 376670 2730.0 - 0 ENSG00000105549.10 protein_coding THEG 1 OTTHUMG00000165491.6 +32415 chr19 HAVANA gene 397589 399173 529.0 + 0 ENSG00000267443.2 lincRNA AC010641.1 2 OTTHUMG00000180533.2 +32416 chr19 HAVANA gene 405438 409170 3129.0 - 0 ENSG00000183186.7 protein_coding C2CD4C 2 OTTHUMG00000180534.3 +32417 chr19 ENSEMBL gene 453134 453245 112.0 + 0 ENSG00000252539.1 rRNA_pseudogene RNA5SP462 3 +32418 chr19 HAVANA gene 416583 460996 4131.0 - 0 ENSG00000129946.10 protein_coding SHC2 2 OTTHUMG00000180545.10 +32419 chr19 HAVANA gene 463346 474983 1718.0 - 0 ENSG00000181781.9 protein_coding ODF3L2 2 OTTHUMG00000180547.4 +32420 chr19 HAVANA gene 489176 505342 2651.0 + 0 ENSG00000099866.14 protein_coding MADCAM1 2 OTTHUMG00000180548.7 +32421 chr19 HAVANA gene 490046 507833 850.0 - 0 ENSG00000266933.2 antisense AC005775.1 2 OTTHUMG00000180556.2 +32422 chr19 HAVANA gene 507497 519654 3642.0 + 0 ENSG00000141933.9 protein_coding TPGS1 2 OTTHUMG00000180557.5 +32423 chr19 HAVANA gene 531712 542092 1942.0 + 0 ENSG00000099804.8 protein_coding CDC34 2 OTTHUMG00000180558.10 +32424 chr19 HAVANA gene 544034 549924 945.0 + 0 ENSG00000197540.7 protein_coding GZMM 2 OTTHUMG00000180559.7 +32425 chr19 HAVANA gene 567210 572228 865.0 - 0 ENSG00000267751.5 antisense AC009005.1 2 OTTHUMG00000180622.3 +32426 chr19 HAVANA gene 571277 583493 3830.0 + 0 ENSG00000172270.19 protein_coding BSG 1 OTTHUMG00000177718.18 +32427 chr19 HAVANA gene 590430 591300 871.0 - 0 ENSG00000267036.2 processed_pseudogene AC005559.1 2 OTTHUMG00000181755.3 +32428 chr19 HAVANA gene 589893 617159 3408.0 + 0 ENSG00000099822.2 protein_coding HCN2 2 OTTHUMG00000180590.1 +32429 chr19 HAVANA gene 617224 633604 5124.0 - 0 ENSG00000099821.13 protein_coding POLRMT 2 OTTHUMG00000180611.11 +32430 chr19 HAVANA gene 637105 637537 433.0 - 0 ENSG00000261204.1 lincRNA AC004449.1 2 OTTHUMG00000175705.1 +32431 chr19 HAVANA gene 639879 644371 2778.0 + 0 ENSG00000070388.11 protein_coding FGF22 2 OTTHUMG00000180591.3 +32432 chr19 HAVANA gene 647526 663277 3496.0 - 0 ENSG00000070423.17 protein_coding RNF126 2 OTTHUMG00000180592.9 +32433 chr19 HAVANA gene 663482 669500 3319.0 + 0 ENSG00000267666.2 lincRNA AC004156.1 2 OTTHUMG00000180612.2 +32434 chr19 HAVANA gene 676365 683399 3067.0 + 0 ENSG00000070404.9 protein_coding FSTL3 2 OTTHUMG00000180593.14 +32435 chr19 HAVANA gene 690353 691172 820.0 + 0 ENSG00000213726.5 processed_pseudogene RPS2P52 1 OTTHUMG00000157965.2 pseudo_consens +32436 chr19 HAVANA gene 685546 695498 1090.0 - 0 ENSG00000185198.11 protein_coding PRSS57 2 OTTHUMG00000180662.5 +32437 chr19 HAVANA gene 708939 748329 4908.0 + 0 ENSG00000099864.17 protein_coding PALM 2 OTTHUMG00000181785.11 +32438 chr19 HAVANA gene 751126 764318 2966.0 + 0 ENSG00000099812.8 protein_coding MISP 2 OTTHUMG00000181786.6 +32439 chr19 HAVANA gene 781002 781862 861.0 - 0 ENSG00000272473.1 lincRNA AC006273.1 2 OTTHUMG00000181787.1 +32440 chr19 HAVANA gene 782755 785080 870.0 + 0 ENSG00000267530.2 lincRNA LINC01836 2 OTTHUMG00000181788.2 +32441 chr19 ENSEMBL gene 804940 805001 62.0 + 0 ENSG00000284361.1 miRNA MIR4745 3 +32442 chr19 HAVANA gene 797075 812327 6883.0 + 0 ENSG00000011304.19 protein_coding PTBP1 2 OTTHUMG00000181789.12 ncRNA_host +32443 chr19 ENSEMBL gene 813584 813653 70.0 + 0 ENSG00000263414.1 miRNA MIR3187 3 +32444 chr19 HAVANA gene 812488 821977 2741.0 - 0 ENSG00000129951.18 protein_coding PLPPR3 2 OTTHUMG00000164523.7 +32445 chr19 HAVANA gene 825097 832018 1783.0 + 0 ENSG00000172232.9 protein_coding AZU1 2 OTTHUMG00000187023.6 +32446 chr19 HAVANA gene 840960 848175 1146.0 + 0 ENSG00000196415.9 protein_coding PRTN3 2 OTTHUMG00000181838.3 +32447 chr19 HAVANA gene 851014 856247 1028.0 + 0 ENSG00000197561.6 protein_coding ELANE 2 OTTHUMG00000181839.4 +32448 chr19 HAVANA gene 859643 863630 1222.0 + 0 ENSG00000197766.7 protein_coding CFD 2 OTTHUMG00000181840.5 +32449 chr19 HAVANA gene 867630 893218 4222.0 - 0 ENSG00000175221.14 protein_coding MED16 1 OTTHUMG00000181841.10 +32450 chr19 ENSEMBL gene 893484 893590 107.0 + 0 ENSG00000207507.1 snRNA RNU6-9 3 +32451 chr19 HAVANA gene 896503 913245 2957.0 - 0 ENSG00000198858.9 protein_coding R3HDM4 2 OTTHUMG00000181899.3 +32452 chr19 HAVANA gene 917287 921015 1680.0 + 0 ENSG00000116014.9 protein_coding KISS1R 2 OTTHUMG00000181900.5 +32453 chr19 HAVANA gene 928259 928817 328.0 - 0 ENSG00000267159.2 antisense AC005379.1 2 OTTHUMG00000181902.2 +32454 chr19 HAVANA gene 956485 958149 341.0 + 0 ENSG00000275162.1 sense_intronic AC005391.1 2 OTTHUMG00000186996.2 overlapping_locus +32455 chr19 HAVANA gene 925781 975934 7210.0 + 0 ENSG00000116017.10 protein_coding ARID3A 1 OTTHUMG00000182018.5 overlapping_locus +32456 chr19 HAVANA gene 984271 998438 2357.0 + 0 ENSG00000065268.10 protein_coding WDR18 2 OTTHUMG00000181903.9 +32457 chr19 HAVANA gene 999796 1002757 641.0 - 0 ENSG00000266990.1 antisense AC004528.1 2 OTTHUMG00000189099.1 +32458 chr19 HAVANA gene 1000419 1009732 3281.0 + 0 ENSG00000116032.5 protein_coding GRIN3B 2 OTTHUMG00000181904.1 +32459 chr19 HAVANA gene 1010221 1010907 440.0 + 0 ENSG00000274177.1 antisense AC004528.2 2 OTTHUMG00000186927.1 +32460 chr19 HAVANA gene 1009648 1021179 4031.0 - 0 ENSG00000182087.13 protein_coding TMEM259 2 OTTHUMG00000181905.7 +32461 chr19 ENSEMBL gene 1021522 1021628 107.0 + 0 ENSG00000207357.1 snRNA RNU6-2 3 +32462 chr19 HAVANA gene 1038727 1039064 338.0 - 0 ENSG00000279753.1 TEC AC011558.1 2 OTTHUMG00000181870.1 +32463 chr19 HAVANA gene 1026581 1039068 3645.0 + 0 ENSG00000064666.14 protein_coding CNN2 2 OTTHUMG00000172729.7 +32464 chr19 HAVANA gene 1040101 1065572 8367.0 + 0 ENSG00000064687.12 protein_coding ABCA7 2 OTTHUMG00000167547.7 +32465 chr19 HAVANA gene 1065923 1086628 6238.0 + 0 ENSG00000180448.10 protein_coding ARHGAP45 1 OTTHUMG00000181871.5 +32466 chr19 HAVANA gene 1086579 1095380 4865.0 - 0 ENSG00000099817.11 protein_coding POLR2E 2 OTTHUMG00000181873.5 +32467 chr19 HAVANA gene 1103926 1106791 2019.0 + 0 ENSG00000167468.16 protein_coding GPX4 1 OTTHUMG00000181874.10 +32468 chr19 HAVANA gene 1107636 1174283 6626.0 - 0 ENSG00000064932.15 protein_coding SBNO2 1 OTTHUMG00000181875.6 +32469 chr19 HAVANA gene 1203209 1203842 634.0 + 0 ENSG00000267736.2 transcribed_processed_pseudogene HMGB2P1 1 OTTHUMG00000180117.3 pseudo_consens,overlapping_locus +32470 chr19 HAVANA gene 1177558 1228435 8639.0 + 0 ENSG00000118046.14 protein_coding STK11 1 OTTHUMG00000180118.10 overlapping_locus +32471 chr19 HAVANA gene 1228287 1238027 4543.0 - 0 ENSG00000099625.13 protein_coding CBARP 2 OTTHUMG00000180141.7 +32472 chr19 HAVANA gene 1238179 1239522 844.0 + 0 ENSG00000267778.1 lincRNA AC004221.1 2 OTTHUMG00000180142.3 +32473 chr19 HAVANA gene 1241746 1244826 2250.0 + 0 ENSG00000099624.7 protein_coding ATP5F1D 2 OTTHUMG00000180143.4 +32474 chr19 HAVANA gene 1248553 1259140 4492.0 + 0 ENSG00000167470.12 protein_coding MIDN 2 OTTHUMG00000180144.5 +32475 chr19 HAVANA gene 1267814 1270241 994.0 - 0 ENSG00000267493.3 antisense CIRBP-AS1 2 OTTHUMG00000180146.3 +32476 chr19 HAVANA gene 1259384 1274880 6368.0 + 0 ENSG00000099622.13 protein_coding CIRBP 2 OTTHUMG00000180145.10 +32477 chr19 HAVANA gene 1275438 1279249 2193.0 + 0 ENSG00000228300.13 protein_coding C19orf24 2 OTTHUMG00000153928.7 +32478 chr19 HAVANA gene 1286154 1300237 949.0 + 0 ENSG00000099617.3 protein_coding EFNA2 2 OTTHUMG00000180148.3 +32479 chr19 HAVANA gene 1307401 1307719 319.0 - 0 ENSG00000240846.2 processed_pseudogene RPS15P9 2 OTTHUMG00000157966.3 +32480 chr19 HAVANA gene 1321225 1322846 1238.0 + 0 ENSG00000267372.2 lincRNA AC005330.1 2 OTTHUMG00000180149.5 +32481 chr19 HAVANA gene 1372238 1374364 2127.0 - 0 ENSG00000279488.1 TEC AC004623.1 2 OTTHUMG00000180113.1 +32482 chr19 HAVANA gene 1376773 1377520 446.0 - 0 ENSG00000267755.1 antisense AC005329.2 2 OTTHUMG00000180114.1 +32483 chr19 HAVANA gene 1354711 1378431 9876.0 + 0 ENSG00000160953.15 protein_coding MUM1 1 OTTHUMG00000180055.7 +32484 chr19 HAVANA gene 1386804 1389651 1366.0 - 0 ENSG00000280486.1 antisense AC005329.3 2 OTTHUMG00000186820.2 +32485 chr19 HAVANA gene 1383527 1395589 7533.0 + 0 ENSG00000115286.19 protein_coding NDUFS7 2 OTTHUMG00000168077.13 +32486 chr19 HAVANA gene 1392170 1396467 3571.0 - 0 ENSG00000248015.6 antisense AC005329.1 2 OTTHUMG00000168079.4 +32487 chr19 HAVANA gene 1397026 1401570 2403.0 - 0 ENSG00000130005.12 protein_coding GAMT 2 OTTHUMG00000180095.4 +32488 chr19 HAVANA gene 1407569 1435687 9201.0 + 0 ENSG00000071626.16 protein_coding DAZAP1 1 OTTHUMG00000180058.9 overlapping_locus +32489 chr19 HAVANA gene 1438358 1440494 2137.0 + 0 ENSG00000115268.9 protein_coding RPS15 1 OTTHUMG00000140099.11 overlapping_locus +32490 chr19 HAVANA gene 1440839 1441938 1100.0 + 0 ENSG00000268798.1 lincRNA AC027307.3 2 OTTHUMG00000180070.4 overlapping_locus +32491 chr19 HAVANA gene 1457670 1458580 911.0 - 0 ENSG00000267317.2 antisense AC027307.2 2 OTTHUMG00000180060.7 +32492 chr19 HAVANA gene 1446302 1473244 12610.0 + 0 ENSG00000115266.11 protein_coding APC2 2 OTTHUMG00000180059.11 +32493 chr19 HAVANA gene 1461143 1479556 5111.0 - 0 ENSG00000119559.15 protein_coding C19orf25 1 OTTHUMG00000180092.6 +32494 chr19 HAVANA gene 1481428 1490752 3792.0 - 0 ENSG00000115257.15 protein_coding PCSK4 2 OTTHUMG00000128541.5 +32495 chr19 HAVANA gene 1490747 1497927 2449.0 + 0 ENSG00000115255.10 protein_coding REEP6 2 OTTHUMG00000180072.4 +32496 chr19 HAVANA gene 1508375 1508963 457.0 + 0 ENSG00000267092.2 antisense AC027307.1 2 OTTHUMG00000180080.2 +32497 chr19 HAVANA gene 1505018 1513604 3625.0 - 0 ENSG00000185761.10 protein_coding ADAMTSL5 2 OTTHUMG00000180093.5 +32498 chr19 HAVANA gene 1524074 1536046 3073.0 + 0 ENSG00000185988.13 protein_coding PLK5 1 OTTHUMG00000180073.6 +32499 chr19 HAVANA gene 1554669 1568058 2850.0 - 0 ENSG00000181588.16 protein_coding MEX3D 2 OTTHUMG00000150369.6 +32500 chr19 ENSEMBL gene 1570575 1570860 286.0 - 0 ENSG00000239367.2 misc_RNA RN7SL477P 3 +32501 chr19 HAVANA gene 1576939 1577086 148.0 + 0 ENSG00000279009.1 TEC AC005943.2 2 OTTHUMG00000186645.1 +32502 chr19 HAVANA gene 1573596 1592801 7845.0 - 0 ENSG00000071655.17 protein_coding MBD3 2 OTTHUMG00000180081.8 overlapping_locus +32503 chr19 HAVANA gene 1578339 1605445 1002.0 - 0 ENSG00000267059.2 protein_coding AC005943.1 2 OTTHUMG00000180082.1 overlapping_locus +32504 chr19 HAVANA gene 1597172 1605490 2151.0 - 0 ENSG00000127540.11 protein_coding UQCR11 2 OTTHUMG00000180084.5 overlapping_locus +32505 chr19 ENSEMBL gene 1616492 1616595 104.0 - 0 ENSG00000252933.1 snRNA RNU6-1223P 3 +32506 chr19 HAVANA gene 1609290 1652605 6080.0 - 0 ENSG00000071564.14 protein_coding TCF3 1 OTTHUMG00000180031.11 ncRNA_host +32507 chr19 ENSEMBL gene 1724115 1724395 281.0 + 0 ENSG00000275642.1 misc_RNA RF00017 3 +32508 chr19 HAVANA gene 1748056 1748745 458.0 + 0 ENSG00000267073.1 lincRNA AC005256.1 2 OTTHUMG00000179989.1 +32509 chr19 HAVANA gene 1752373 1780988 8318.0 + 0 ENSG00000205922.4 protein_coding ONECUT3 2 OTTHUMG00000172429.1 +32510 chr19 HAVANA gene 1782075 1812276 7014.0 - 0 ENSG00000130270.16 protein_coding ATP8B3 2 OTTHUMG00000166189.12 +32511 chr19 HAVANA gene 1815249 1815873 447.0 + 0 ENSG00000267007.1 antisense AC012615.2 2 OTTHUMG00000179990.1 +32512 chr19 ENSEMBL gene 1816159 1816238 80.0 - 0 ENSG00000284216.1 miRNA MIR1909 3 +32513 chr19 HAVANA gene 1822089 1824542 2454.0 + 0 ENSG00000267244.5 processed_transcript AC012615.6 2 OTTHUMG00000179992.3 +32514 chr19 HAVANA gene 1815246 1848463 5199.0 - 0 ENSG00000079313.14 protein_coding REXO1 2 OTTHUMG00000179991.6 ncRNA_host +32515 chr19 HAVANA gene 1852382 1853622 500.0 + 0 ENSG00000267125.2 antisense AC012615.3 2 OTTHUMG00000179993.2 +32516 chr19 HAVANA gene 1860250 1862019 607.0 + 0 ENSG00000267141.1 antisense AC012615.4 2 OTTHUMG00000179995.1 +32517 chr19 HAVANA gene 1852399 1863568 2955.0 - 0 ENSG00000129911.8 protein_coding KLF16 2 OTTHUMG00000179994.2 +32518 chr19 HAVANA gene 1875016 1875992 581.0 + 0 ENSG00000267232.1 lincRNA AC012615.5 2 OTTHUMG00000179996.1 +32519 chr19 HAVANA gene 1874871 1876169 1299.0 - 0 ENSG00000261526.2 lincRNA AC012615.1 2 OTTHUMG00000175708.2 +32520 chr19 HAVANA gene 1876810 1885547 6139.0 - 0 ENSG00000129968.15 protein_coding ABHD17A 2 OTTHUMG00000171872.6 +32521 chr19 HAVANA gene 1905378 1913447 2237.0 + 0 ENSG00000213638.5 protein_coding ADAT3 2 OTTHUMG00000154591.31 overlapping_locus +32522 chr19 HAVANA gene 1905214 1926013 6953.0 + 0 ENSG00000227500.9 protein_coding SCAMP4 2 OTTHUMG00000154590.29 overlapping_locus +32523 chr19 HAVANA gene 1952531 1954586 1346.0 - 0 ENSG00000180846.8 antisense CSNK1G2-AS1 2 OTTHUMG00000179999.1 +32524 chr19 HAVANA gene 1941149 1981338 3804.0 + 0 ENSG00000133275.15 protein_coding CSNK1G2 1 OTTHUMG00000180016.4 +32525 chr19 HAVANA gene 1989401 1990370 935.0 + 0 ENSG00000267283.1 processed_transcript AC005306.1 2 OTTHUMG00000180018.1 +32526 chr19 HAVANA gene 2002580 2003581 1002.0 - 0 ENSG00000279653.1 TEC AC004678.2 2 OTTHUMG00000186534.1 overlapping_locus +32527 chr19 HAVANA gene 2013728 2014656 929.0 - 0 ENSG00000275468.1 processed_pseudogene AC004678.1 2 OTTHUMG00000186766.1 overlapping_locus +32528 chr19 HAVANA gene 2030853 2031051 199.0 - 0 ENSG00000267180.1 transcribed_processed_pseudogene AC007136.1 1 OTTHUMG00000180019.1 pseudo_consens,overlapping_locus +32529 chr19 HAVANA gene 1985438 2034881 5944.0 - 0 ENSG00000133243.8 protein_coding BTBD2 2 OTTHUMG00000180017.5 overlapping_locus +32530 chr19 HAVANA gene 2037465 2051244 5221.0 - 0 ENSG00000099875.14 protein_coding MKNK2 1 OTTHUMG00000180020.6 +32531 chr19 HAVANA gene 2071038 2096673 4149.0 - 0 ENSG00000172081.13 protein_coding MOB3A 2 OTTHUMG00000180353.4 +32532 chr19 HAVANA gene 2096429 2099593 2770.0 + 0 ENSG00000099840.13 protein_coding IZUMO4 2 OTTHUMG00000141290.5 +32533 chr19 HAVANA gene 2100988 2164468 8613.0 - 0 ENSG00000065000.17 protein_coding AP3D1 2 OTTHUMG00000180354.6 +32534 chr19 HAVANA gene 2212029 2215565 2738.0 - 0 ENSG00000267122.1 antisense AC004490.1 2 OTTHUMG00000180412.1 +32535 chr19 HAVANA gene 2164149 2232578 11272.0 + 0 ENSG00000104885.17 protein_coding DOT1L 1 OTTHUMG00000150431.6 +32536 chr19 ENSEMBL gene 2234062 2234149 88.0 - 0 ENSG00000221411.1 miRNA MIR1227 3 +32537 chr19 ENSEMBL gene 2235829 2235926 98.0 - 0 ENSG00000284129.1 miRNA MIR6789 3 +32538 chr19 HAVANA gene 2230084 2237704 4655.0 - 0 ENSG00000104886.11 protein_coding PLEKHJ1 2 OTTHUMG00000180425.4 ncRNA_host +32539 chr19 HAVANA gene 2236504 2248679 3134.0 + 0 ENSG00000104897.9 protein_coding SF3A2 2 OTTHUMG00000180414.4 +32540 chr19 ENSEMBL gene 2250639 2250718 80.0 + 0 ENSG00000284272.1 miRNA MIR4321 3 +32541 chr19 HAVANA gene 2249309 2252073 2587.0 + 0 ENSG00000104899.7 protein_coding AMH 1 OTTHUMG00000180415.4 ncRNA_host +32542 chr19 HAVANA gene 2252252 2269759 1950.0 - 0 ENSG00000167476.10 protein_coding JSRP1 2 OTTHUMG00000180413.5 +32543 chr19 HAVANA gene 2269509 2273490 3436.0 + 0 ENSG00000104904.12 protein_coding OAZ1 1 OTTHUMG00000178459.10 overlapping_locus +32544 chr19 HAVANA gene 2274622 2282176 2574.0 - 0 ENSG00000188305.5 protein_coding PEAK3 2 OTTHUMG00000178460.3 +32545 chr19 HAVANA gene 2289784 2292024 2241.0 - 0 ENSG00000220008.3 protein_coding LINGO3 2 OTTHUMG00000180418.2 retrogene +32546 chr19 HAVANA gene 2321517 2328620 1698.0 - 0 ENSG00000130332.14 protein_coding LSM7 2 OTTHUMG00000180441.4 +32547 chr19 HAVANA gene 2269525 2341172 1268.0 + 0 ENSG00000273734.1 protein_coding AC005258.1 2 OTTHUMG00000186732.3 overlapping_locus +32548 chr19 HAVANA gene 2328615 2354806 7130.0 + 0 ENSG00000005206.16 protein_coding SPPL2B 2 OTTHUMG00000180443.9 overlapping_locus +32549 chr19 HAVANA gene 2360238 2426239 4328.0 + 0 ENSG00000178297.13 protein_coding TMPRSS9 2 OTTHUMG00000180431.6 +32550 chr19 HAVANA gene 2425624 2427894 1973.0 - 0 ENSG00000099800.7 protein_coding TIMM13 2 OTTHUMG00000180432.2 overlapping_locus +32551 chr19 ENSEMBL gene 2434914 2435000 87.0 - 0 ENSG00000283728.1 miRNA MIR7108 3 +32552 chr19 HAVANA gene 2427638 2456996 5432.0 - 0 ENSG00000176619.12 protein_coding LMNB2 2 OTTHUMG00000150626.6 ncRNA_host,overlapping_locus +32553 chr19 HAVANA gene 2458935 2462185 371.0 - 0 ENSG00000267201.1 lincRNA LINC01775 2 OTTHUMG00000180433.1 +32554 chr19 HAVANA gene 2476122 2478259 2138.0 + 0 ENSG00000099860.8 protein_coding GADD45B 2 OTTHUMG00000180434.3 +32555 chr19 ENSEMBL gene 2503047 2503141 95.0 - 0 ENSG00000252962.1 snRNA RNU6-993P 3 +32556 chr19 HAVANA gene 2538112 2538754 317.0 + 0 ENSG00000105694.3 processed_pseudogene ELOCP28 1 OTTHUMG00000180543.1 pseudo_consens +32557 chr19 ENSEMBL gene 2595019 2595291 273.0 - 0 ENSG00000263974.2 misc_RNA RN7SL121P 3 +32558 chr19 HAVANA gene 2610155 2611862 1708.0 - 0 ENSG00000267412.1 sense_intronic AC092068.2 2 OTTHUMG00000180437.1 overlapping_locus +32559 chr19 ENSEMBL gene 2630715 2630793 79.0 + 0 ENSG00000277904.1 miRNA MIR7850 3 +32560 chr19 HAVANA gene 2631954 2632849 454.0 + 0 ENSG00000267214.1 antisense AC092068.1 2 OTTHUMG00000180509.1 +32561 chr19 HAVANA gene 2641838 2643853 2016.0 - 0 ENSG00000267749.1 sense_intronic AC092068.3 2 OTTHUMG00000180438.1 overlapping_locus +32562 chr19 HAVANA gene 2700689 2701266 578.0 - 0 ENSG00000276097.1 sense_intronic AC006538.3 2 OTTHUMG00000186546.1 overlapping_locus +32563 chr19 HAVANA gene 2511219 2702709 4561.0 - 0 ENSG00000176533.12 protein_coding GNG7 2 OTTHUMG00000180435.2 ncRNA_host,overlapping_locus +32564 chr19 HAVANA gene 2714567 2721418 3485.0 - 0 ENSG00000176490.4 protein_coding DIRAS1 2 OTTHUMG00000180439.3 overlapping_locus,retrogene +32565 chr19 HAVANA gene 2727743 2729327 1585.0 - 0 ENSG00000261342.1 sense_intronic AC006538.1 2 OTTHUMG00000175711.2 overlapping_locus +32566 chr19 HAVANA gene 2717769 2740048 543.0 - 0 ENSG00000267001.1 protein_coding AC006538.2 1 OTTHUMG00000180473.2 overlapping_locus +32567 chr19 HAVANA gene 2732204 2740152 4552.0 - 0 ENSG00000141873.10 protein_coding SLC39A3 1 OTTHUMG00000180440.4 overlapping_locus +32568 chr19 HAVANA gene 2754714 2783371 3801.0 - 0 ENSG00000104969.9 protein_coding SGTA 2 OTTHUMG00000180474.4 +32569 chr19 HAVANA gene 2785460 2815807 7464.0 + 0 ENSG00000172009.14 protein_coding THOP1 1 OTTHUMG00000180492.6 +32570 chr19 HAVANA gene 2819874 2835773 4685.0 + 0 ENSG00000172006.11 protein_coding ZNF554 2 OTTHUMG00000180493.5 +32571 chr19 HAVANA gene 2847227 2858716 555.0 - 0 ENSG00000267063.1 antisense AC006130.1 2 OTTHUMG00000180564.1 +32572 chr19 HAVANA gene 2841435 2860484 8557.0 + 0 ENSG00000186300.11 protein_coding ZNF555 1 OTTHUMG00000180500.5 +32573 chr19 HAVANA gene 2874950 2875592 326.0 - 0 ENSG00000267398.1 processed_pseudogene AC006130.2 1 OTTHUMG00000180565.1 pseudo_consens +32574 chr19 HAVANA gene 2867335 2883445 6574.0 + 0 ENSG00000172000.7 protein_coding ZNF556 1 OTTHUMG00000180501.4 +32575 chr19 HAVANA gene 2896625 2897222 598.0 - 0 ENSG00000266938.1 processed_pseudogene AC119403.2 2 OTTHUMG00000180626.1 +32576 chr19 HAVANA gene 2900898 2918476 2327.0 + 0 ENSG00000171970.12 protein_coding ZNF57 1 OTTHUMG00000164485.5 +32577 chr19 HAVANA gene 2915146 2926807 776.0 - 0 ENSG00000253392.2 antisense AC119403.1 1 OTTHUMG00000164508.2 +32578 chr19 HAVANA gene 2933218 2944971 2437.0 - 0 ENSG00000175691.8 protein_coding ZNF77 2 OTTHUMG00000180566.1 +32579 chr19 HAVANA gene 2949035 2950644 1610.0 + 0 ENSG00000279452.1 TEC AC006277.1 2 OTTHUMG00000175713.1 +32580 chr19 HAVANA gene 2977446 2995184 3652.0 + 0 ENSG00000104953.19 protein_coding TLE6 2 OTTHUMG00000156793.12 +32581 chr19 HAVANA gene 2997638 3047635 4038.0 - 0 ENSG00000065717.14 protein_coding TLE2 2 OTTHUMG00000180613.7 +32582 chr19 HAVANA gene 3052910 3053724 564.0 + 0 ENSG00000267469.1 antisense AC005944.1 2 OTTHUMG00000180706.2 +32583 chr19 HAVANA gene 3052910 3063107 5298.0 - 0 ENSG00000104964.14 protein_coding AES 2 OTTHUMG00000180567.4 +32584 chr19 HAVANA gene 3118665 3119304 452.0 - 0 ENSG00000267139.1 antisense AC005262.2 2 OTTHUMG00000180634.1 +32585 chr19 HAVANA gene 3121116 3122128 472.0 - 0 ENSG00000267688.1 antisense KF456478.1 2 OTTHUMG00000180635.1 +32586 chr19 HAVANA gene 3094410 3124004 6242.0 + 0 ENSG00000088256.8 protein_coding GNA11 2 OTTHUMG00000180631.6 +32587 chr19 HAVANA gene 3130717 3131398 362.0 + 0 ENSG00000266944.1 processed_pseudogene AC005262.1 1 OTTHUMG00000180670.1 pseudo_consens +32588 chr19 HAVANA gene 3141576 3155175 2319.0 - 0 ENSG00000267551.3 antisense AC005264.1 2 OTTHUMG00000180671.1 +32589 chr19 HAVANA gene 3136193 3163769 2613.0 + 0 ENSG00000060558.3 protein_coding GNA15 2 OTTHUMG00000180637.4 +32590 chr19 HAVANA gene 3172346 3180332 1664.0 + 0 ENSG00000125910.5 protein_coding S1PR4 2 OTTHUMG00000180672.1 +32591 chr19 HAVANA gene 3185563 3209575 4175.0 + 0 ENSG00000125912.10 protein_coding NCLN 2 OTTHUMG00000180687.4 +32592 chr19 HAVANA gene 3224703 3297076 6024.0 + 0 ENSG00000161082.12 protein_coding CELF5 2 OTTHUMG00000180693.2 +32593 chr19 HAVANA gene 3296765 3303003 460.0 - 0 ENSG00000267448.5 antisense AC010649.1 2 OTTHUMG00000180707.1 +32594 chr19 HAVANA gene 3355554 3355955 402.0 - 0 ENSG00000280103.1 TEC AC007792.1 2 OTTHUMG00000180785.1 +32595 chr19 HAVANA gene 3371395 3371602 208.0 + 0 ENSG00000279599.1 TEC AC005514.1 2 OTTHUMG00000180786.1 overlapping_locus +32596 chr19 HAVANA gene 3314403 3469217 9801.0 + 0 ENSG00000141905.18 protein_coding NFIC 2 OTTHUMG00000180731.8 overlapping_locus +32597 chr19 HAVANA gene 3473986 3480542 1498.0 - 0 ENSG00000095932.6 protein_coding SMIM24 2 OTTHUMG00000180761.4 +32598 chr19 HAVANA gene 3482804 3483446 493.0 - 0 ENSG00000284638.1 protein_coding AC005551.1 2 OTTHUMG00000180762.5 +32599 chr19 ENSEMBL gene 3490822 3500940 2031.0 - 0 ENSG00000129932.8 protein_coding DOHH 3 +32600 chr19 ENSEMBL gene 3521248 3521320 73.0 - 0 ENSG00000252408.1 snoRNA RF00212 3 +32601 chr19 HAVANA gene 3506273 3538330 5802.0 + 0 ENSG00000105325.13 protein_coding FZR1 2 OTTHUMG00000180747.4 +32602 chr19 HAVANA gene 3539154 3544030 674.0 + 0 ENSG00000183397.5 protein_coding C19orf71 2 OTTHUMG00000180764.1 +32603 chr19 HAVANA gene 3544199 3557569 565.0 + 0 ENSG00000267436.1 antisense AC005786.3 2 OTTHUMG00000181924.1 +32604 chr19 HAVANA gene 3558015 3558486 369.0 + 0 ENSG00000267231.1 lincRNA AC005786.2 2 OTTHUMG00000180787.1 +32605 chr19 HAVANA gene 3567278 3567959 682.0 - 0 ENSG00000279590.1 TEC AC005786.4 2 OTTHUMG00000180788.1 overlapping_locus +32606 chr19 HAVANA gene 3568120 3568273 154.0 - 0 ENSG00000266959.1 processed_pseudogene AC005786.1 1 OTTHUMG00000180765.1 pseudo_consens,overlapping_locus +32607 chr19 HAVANA gene 3538261 3574290 5277.0 - 0 ENSG00000161091.12 protein_coding MFSD12 2 OTTHUMG00000180766.5 overlapping_locus +32608 chr19 HAVANA gene 3572777 3579088 3857.0 + 0 ENSG00000064961.18 protein_coding HMG20B 1 OTTHUMG00000150437.6 +32609 chr19 HAVANA gene 3585553 3593541 4335.0 + 0 ENSG00000179855.6 protein_coding GIPC3 2 OTTHUMG00000167425.2 +32610 chr19 HAVANA gene 3594506 3606840 2793.0 - 0 ENSG00000006638.11 protein_coding TBXA2R 2 OTTHUMG00000180806.2 +32611 chr19 HAVANA gene 3607247 3613930 1913.0 + 0 ENSG00000226800.5 antisense CACTIN-AS1 2 OTTHUMG00000180807.1 +32612 chr19 HAVANA gene 3610641 3626815 5952.0 - 0 ENSG00000105298.13 protein_coding CACTIN 1 OTTHUMG00000180808.6 +32613 chr19 HAVANA gene 3672582 3674295 482.0 + 0 ENSG00000267304.1 antisense AC004637.1 2 OTTHUMG00000180871.1 +32614 chr19 HAVANA gene 3630183 3700479 6963.0 - 0 ENSG00000186111.9 protein_coding PIP5K1C 1 OTTHUMG00000180870.4 +32615 chr19 HAVANA gene 3708109 3750813 4217.0 + 0 ENSG00000105289.14 protein_coding TJP3 2 OTTHUMG00000180872.2 +32616 chr19 HAVANA gene 3753840 3756517 556.0 + 0 ENSG00000267205.1 antisense AC005954.2 2 OTTHUMG00000181961.1 +32617 chr19 HAVANA gene 3754620 3756659 337.0 - 0 ENSG00000267138.1 sense_intronic AC005954.1 2 OTTHUMG00000181736.1 overlapping_locus +32618 chr19 HAVANA gene 3750819 3761699 5556.0 - 0 ENSG00000011132.11 protein_coding APBA3 2 OTTHUMG00000180915.2 overlapping_locus +32619 chr19 HAVANA gene 3762664 3768575 1003.0 + 0 ENSG00000183617.4 protein_coding MRPL54 2 OTTHUMG00000180873.1 +32620 chr19 HAVANA gene 3769089 3772221 2414.0 - 0 ENSG00000173976.15 protein_coding RAX2 2 OTTHUMG00000171148.4 +32621 chr19 HAVANA gene 3775996 3776182 187.0 - 0 ENSG00000267148.1 unprocessed_pseudogene AC005777.1 2 OTTHUMG00000182152.1 +32622 chr19 HAVANA gene 3777970 3802129 4141.0 - 0 ENSG00000007264.14 protein_coding MATK 1 OTTHUMG00000180916.5 +32623 chr19 HAVANA gene 3804024 3869032 5944.0 - 0 ENSG00000105278.10 protein_coding ZFR2 2 OTTHUMG00000180918.5 +32624 chr19 HAVANA gene 3870991 3872107 534.0 + 0 ENSG00000266989.1 processed_pseudogene FTLP5 1 OTTHUMG00000180809.1 pseudo_consens +32625 chr19 ENSEMBL gene 3920245 3920506 262.0 - 0 ENSG00000266627.2 misc_RNA RN7SL202P 3 +32626 chr19 HAVANA gene 3879864 3928079 5403.0 + 0 ENSG00000167654.17 protein_coding ATCAY 2 OTTHUMG00000181836.5 +32627 chr19 HAVANA gene 3933103 3942416 1141.0 + 0 ENSG00000077009.13 protein_coding NMRK2 1 OTTHUMG00000181758.4 +32628 chr19 ENSEMBL gene 3961414 3961512 99.0 - 0 ENSG00000283928.1 miRNA MIR637 3 +32629 chr19 HAVANA gene 3958453 3971123 3549.0 - 0 ENSG00000167657.13 protein_coding DAPK3 2 OTTHUMG00000181825.3 ncRNA_host +32630 chr19 ENSEMBL gene 3982507 3982572 66.0 - 0 ENSG00000206775.1 snoRNA SNORD37 3 +32631 chr19 HAVANA gene 3976056 3985469 4027.0 - 0 ENSG00000167658.15 protein_coding EEF2 1 OTTHUMG00000181790.2 ncRNA_host +32632 chr19 HAVANA gene 4007646 4039386 3646.0 + 0 ENSG00000105229.6 protein_coding PIAS4 2 OTTHUMG00000181759.2 +32633 chr19 HAVANA gene 4061615 4062749 684.0 - 0 ENSG00000268670.1 sense_intronic AC016586.1 2 OTTHUMG00000181793.1 overlapping_locus +32634 chr19 HAVANA gene 4044364 4066945 5725.0 - 0 ENSG00000178951.8 protein_coding ZBTB7A 2 OTTHUMG00000181792.2 overlapping_locus +32635 chr19 HAVANA gene 4090321 4124129 5236.0 - 0 ENSG00000126934.13 protein_coding MAP2K2 2 OTTHUMG00000134286.6 +32636 chr19 ENSEMBL gene 4127492 4127732 241.0 + 0 ENSG00000278007.1 misc_RNA RF00017 3 +32637 chr19 HAVANA gene 4153601 4173054 2678.0 + 0 ENSG00000060566.13 protein_coding CREB3L3 1 OTTHUMG00000181846.3 +32638 chr19 HAVANA gene 4174109 4182604 2787.0 - 0 ENSG00000077463.14 protein_coding SIRT6 2 OTTHUMG00000181847.4 +32639 chr19 HAVANA gene 4183354 4224814 4474.0 + 0 ENSG00000089847.12 protein_coding ANKRD24 2 OTTHUMG00000181865.3 +32640 chr19 HAVANA gene 4229498 4237531 1284.0 + 0 ENSG00000105246.5 protein_coding EBI3 2 OTTHUMG00000181866.1 +32641 chr19 HAVANA gene 4246339 4247358 1020.0 - 0 ENSG00000280247.1 TEC AC005578.1 2 OTTHUMG00000181878.1 +32642 chr19 HAVANA gene 4247079 4269090 1671.0 + 0 ENSG00000105248.15 protein_coding YJU2 1 OTTHUMG00000181867.4 +32643 chr19 HAVANA gene 4278601 4290724 2811.0 + 0 ENSG00000105251.10 protein_coding SHD 2 OTTHUMG00000181879.2 +32644 chr19 HAVANA gene 4292232 4302431 1262.0 - 0 ENSG00000167664.8 protein_coding TMIGD2 2 OTTHUMG00000181880.2 +32645 chr19 HAVANA gene 4304600 4323843 3111.0 + 0 ENSG00000105255.10 protein_coding FSD1 2 OTTHUMG00000181881.5 +32646 chr19 HAVANA gene 4324043 4342786 2766.0 - 0 ENSG00000178078.11 protein_coding STAP2 2 OTTHUMG00000181884.4 +32647 chr19 HAVANA gene 4339577 4343491 279.0 + 0 ENSG00000269425.1 antisense AC104521.1 2 OTTHUMG00000181964.1 +32648 chr19 HAVANA gene 4347780 4349061 334.0 - 0 ENSG00000267938.1 unprocessed_pseudogene EIF1P6 1 OTTHUMG00000181916.1 pseudo_consens,overlapping_locus +32649 chr19 HAVANA gene 4347244 4354057 357.0 - 0 ENSG00000269807.1 antisense AC007292.3 2 OTTHUMG00000181915.1 overlapping_locus +32650 chr19 HAVANA gene 4356637 4358448 1812.0 - 0 ENSG00000269318.1 antisense AC007292.2 2 OTTHUMG00000181917.1 +32651 chr19 HAVANA gene 4343527 4360086 2049.0 + 0 ENSG00000008382.15 protein_coding MPND 2 OTTHUMG00000181914.2 +32652 chr19 HAVANA gene 4363789 4364640 746.0 + 0 ENSG00000267980.1 antisense AC007292.1 2 OTTHUMG00000181919.1 +32653 chr19 HAVANA gene 4360370 4400547 3685.0 - 0 ENSG00000141985.9 protein_coding SH3GL1 1 OTTHUMG00000181918.3 +32654 chr19 HAVANA gene 4429689 4430934 569.0 - 0 ENSG00000267255.1 antisense AC011498.3 2 OTTHUMG00000181923.1 +32655 chr19 HAVANA gene 4402662 4445018 4299.0 + 0 ENSG00000167670.15 protein_coding CHAF1A 1 OTTHUMG00000181922.5 +32656 chr19 ENSEMBL gene 4445978 4446048 71.0 + 0 ENSG00000266437.1 miRNA MIR4746 3 +32657 chr19 HAVANA gene 4447304 4448217 540.0 + 0 ENSG00000267030.1 antisense AC011498.2 2 OTTHUMG00000182004.1 +32658 chr19 HAVANA gene 4448810 4450836 2027.0 + 0 ENSG00000280239.1 TEC AC011498.7 2 OTTHUMG00000182005.1 +32659 chr19 HAVANA gene 4454014 4455286 510.0 + 0 ENSG00000267769.1 antisense AC011498.6 2 OTTHUMG00000182006.1 +32660 chr19 HAVANA gene 4444999 4457822 5275.0 - 0 ENSG00000167671.11 protein_coding UBXN6 1 OTTHUMG00000181954.7 +32661 chr19 HAVANA gene 4457962 4471493 837.0 - 0 ENSG00000267011.5 lincRNA AC011498.1 2 OTTHUMG00000182098.1 +32662 chr19 HAVANA gene 4472287 4502211 4299.0 + 0 ENSG00000167674.14 protein_coding HDGFL2 2 OTTHUMG00000182007.7 +32663 chr19 HAVANA gene 4502180 4518465 6502.0 - 0 ENSG00000167676.4 protein_coding PLIN4 2 OTTHUMG00000167571.2 +32664 chr19 HAVANA gene 4522531 4535224 4815.0 - 0 ENSG00000214456.8 protein_coding PLIN5 2 OTTHUMG00000182008.2 overlapping_locus +32665 chr19 HAVANA gene 4528427 4540067 1803.0 - 0 ENSG00000267385.1 protein_coding AC011498.4 2 OTTHUMG00000182009.1 overlapping_locus +32666 chr19 HAVANA gene 4536409 4540474 3133.0 - 0 ENSG00000171236.9 protein_coding LRG1 2 OTTHUMG00000182010.2 overlapping_locus +32667 chr19 HAVANA gene 4542593 4559808 4412.0 - 0 ENSG00000167680.15 protein_coding SEMA6B 2 OTTHUMG00000182011.4 +32668 chr19 HAVANA gene 4621194 4622307 486.0 + 0 ENSG00000267408.1 unprocessed_pseudogene AC011498.5 1 OTTHUMG00000181921.1 pseudo_consens +32669 chr19 HAVANA gene 4654964 4655524 392.0 - 0 ENSG00000268565.1 antisense AC005339.1 2 OTTHUMG00000182014.1 overlapping_locus +32670 chr19 HAVANA gene 4639518 4655568 6667.0 + 0 ENSG00000185361.8 protein_coding TNFAIP8L1 2 OTTHUMG00000182013.1 +32671 chr19 HAVANA gene 4641374 4670370 1678.0 - 0 ENSG00000074842.7 protein_coding MYDGF 2 OTTHUMG00000182039.1 overlapping_locus +32672 chr19 HAVANA gene 4679282 4685948 3071.0 + 0 ENSG00000205790.1 antisense DPP9-AS1 2 OTTHUMG00000182047.1 +32673 chr19 HAVANA gene 4675224 4724673 8324.0 - 0 ENSG00000142002.17 protein_coding DPP9 1 OTTHUMG00000182040.8 +32674 chr19 ENSEMBL gene 4770670 4770779 110.0 + 0 ENSG00000207630.1 miRNA MIR7-3 3 +32675 chr19 HAVANA gene 4769140 4772533 1124.0 + 0 ENSG00000176840.11 lincRNA MIR7-3HG 1 OTTHUMG00000150589.2 ncRNA_host +32676 chr19 HAVANA gene 4785120 4791207 418.0 - 0 ENSG00000268536.1 lincRNA AC005523.1 2 OTTHUMG00000182050.1 +32677 chr19 HAVANA gene 4791745 4795559 3572.0 - 0 ENSG00000269604.1 antisense AC005523.2 2 OTTHUMG00000182049.1 +32678 chr19 HAVANA gene 4791681 4801273 9593.0 + 0 ENSG00000141965.4 protein_coding FEM1A 2 OTTHUMG00000182048.2 +32679 chr19 HAVANA gene 4815932 4831704 2676.0 - 0 ENSG00000127666.9 protein_coding TICAM1 2 OTTHUMG00000180248.1 +32680 chr19 HAVANA gene 4838332 4838907 511.0 + 0 ENSG00000267484.1 antisense AC027319.1 2 OTTHUMG00000180510.1 +32681 chr19 HAVANA gene 4838341 4867768 2813.0 - 0 ENSG00000105355.8 protein_coding PLIN3 1 OTTHUMG00000180249.2 +32682 chr19 HAVANA gene 4890437 4902867 1638.0 - 0 ENSG00000205784.2 protein_coding ARRDC5 2 OTTHUMG00000180250.1 +32683 chr19 ENSEMBL gene 4932687 4932740 54.0 + 0 ENSG00000263409.1 miRNA MIR4747 3 +32684 chr19 HAVANA gene 4903080 4962154 5145.0 + 0 ENSG00000276043.4 protein_coding UHRF1 2 OTTHUMG00000180251.3 ncRNA_host +32685 chr19 HAVANA gene 4969113 5153595 14716.0 + 0 ENSG00000127663.14 protein_coding KDM4B 2 OTTHUMG00000180281.4 +32686 chr19 HAVANA gene 5178119 5178464 346.0 + 0 ENSG00000267550.1 antisense AC022517.1 2 OTTHUMG00000180326.1 +32687 chr19 HAVANA gene 5277734 5278133 400.0 + 0 ENSG00000239524.2 processed_pseudogene RPL32P34 1 OTTHUMG00000157976.2 pseudo_consens +32688 chr19 HAVANA gene 5294247 5294696 450.0 + 0 ENSG00000274447.1 antisense AC005790.1 2 OTTHUMG00000186551.1 +32689 chr19 HAVANA gene 5158495 5340803 8565.0 - 0 ENSG00000105426.16 protein_coding PTPRS 2 OTTHUMG00000180325.5 +32690 chr19 HAVANA gene 5455431 5456856 1426.0 + 0 ENSG00000105428.5 protein_coding ZNRF4 2 OTTHUMG00000180356.1 retrogene +32691 chr19 HAVANA gene 5576660 5576938 279.0 - 0 ENSG00000233270.1 processed_pseudogene SNRPEP4 2 OTTHUMG00000186872.1 +32692 chr19 HAVANA gene 5558167 5578349 4429.0 - 0 ENSG00000223573.7 protein_coding TINCR 2 OTTHUMG00000150390.4 +32693 chr19 HAVANA gene 5586999 5624046 6222.0 - 0 ENSG00000130254.11 protein_coding SAFB2 1 OTTHUMG00000180374.4 +32694 chr19 HAVANA gene 5623035 5668478 7036.0 + 0 ENSG00000160633.12 protein_coding SAFB 2 OTTHUMG00000180502.3 +32695 chr19 HAVANA gene 5678421 5680896 1854.0 - 0 ENSG00000174917.8 protein_coding C19orf70 2 OTTHUMG00000180503.2 +32696 chr19 HAVANA gene 5680604 5688523 2991.0 + 0 ENSG00000167733.13 protein_coding HSD11B1L 2 OTTHUMG00000178586.2 overlapping_locus +32697 chr19 HAVANA gene 5674947 5691876 2272.0 + 0 ENSG00000130255.12 protein_coding RPL36 2 OTTHUMG00000178585.3 overlapping_locus +32698 chr19 HAVANA gene 5691834 5720572 5085.0 - 0 ENSG00000196365.11 protein_coding LONP1 1 OTTHUMG00000180504.4 +32699 chr19 HAVANA gene 5720677 5778734 2741.0 + 0 ENSG00000174898.15 protein_coding CATSPERD 1 OTTHUMG00000143036.4 +32700 chr19 HAVANA gene 5782960 5784765 1806.0 - 0 ENSG00000212123.3 protein_coding PRR22 2 OTTHUMG00000180553.1 overlapping_locus +32701 chr19 HAVANA gene 5784005 5785619 581.0 - 0 ENSG00000267157.1 protein_coding AC011499.1 2 OTTHUMG00000180554.1 overlapping_locus +32702 chr19 HAVANA gene 5784832 5791238 3642.0 - 0 ENSG00000141994.15 protein_coding DUS3L 2 OTTHUMG00000162311.4 overlapping_locus +32703 chr19 HAVANA gene 5823802 5828324 1109.0 + 0 ENSG00000171119.2 protein_coding NRTN 2 OTTHUMG00000180555.2 +32704 chr19 HAVANA gene 5830610 5839731 4349.0 - 0 ENSG00000156413.13 protein_coding FUT6 2 OTTHUMG00000167335.5 +32705 chr19 HAVANA gene 5842888 5851474 3109.0 - 0 ENSG00000171124.13 protein_coding FUT3 2 OTTHUMG00000180614.4 +32706 chr19 HAVANA gene 5847467 5858239 1188.0 + 0 ENSG00000267709.1 antisense AC024592.2 2 OTTHUMG00000180615.1 +32707 chr19 HAVANA gene 5865826 5870540 1992.0 - 0 ENSG00000130383.7 protein_coding FUT5 2 OTTHUMG00000180616.1 overlapping_locus +32708 chr19 HAVANA gene 5899895 5901511 356.0 + 0 ENSG00000266941.1 antisense AC024592.1 2 OTTHUMG00000180628.1 +32709 chr19 HAVANA gene 5866171 5903787 2193.0 - 0 ENSG00000267740.5 protein_coding AC024592.3 1 OTTHUMG00000180627.2 overlapping_locus +32710 chr19 HAVANA gene 5891276 5904006 4839.0 - 0 ENSG00000174886.12 protein_coding NDUFA11 2 OTTHUMG00000180617.3 overlapping_locus +32711 chr19 HAVANA gene 5904858 5910853 2254.0 + 0 ENSG00000187650.3 protein_coding VMAC 2 OTTHUMG00000180618.2 overlapping_locus +32712 chr19 HAVANA gene 5911578 5913899 589.0 - 0 ENSG00000267571.1 antisense AC104532.2 2 OTTHUMG00000180630.1 +32713 chr19 HAVANA gene 5904841 5914707 580.0 + 0 ENSG00000267314.1 protein_coding AC104532.1 2 OTTHUMG00000180629.1 overlapping_locus +32714 chr19 HAVANA gene 5911707 5915877 4097.0 + 0 ENSG00000105519.15 protein_coding CAPS 2 OTTHUMG00000180619.5 overlapping_locus +32715 chr19 HAVANA gene 5916139 5978142 7445.0 - 0 ENSG00000031823.14 protein_coding RANBP3 2 OTTHUMG00000180636.6 +32716 chr19 HAVANA gene 5978403 6020363 639.0 + 0 ENSG00000266983.1 antisense AC011444.1 2 OTTHUMG00000180710.1 +32717 chr19 HAVANA gene 6072823 6073527 418.0 + 0 ENSG00000267589.1 processed_pseudogene AC011444.4 1 OTTHUMG00000180752.1 pseudo_consens,overlapping_locus +32718 chr19 HAVANA gene 6067953 6077119 567.0 + 0 ENSG00000267262.1 antisense AC011444.2 2 OTTHUMG00000180751.1 overlapping_locus +32719 chr19 HAVANA gene 6109322 6125797 325.0 + 0 ENSG00000267299.1 antisense AC011444.3 2 OTTHUMG00000180753.1 +32720 chr19 HAVANA gene 6176256 6176442 187.0 - 0 ENSG00000267415.1 transcribed_processed_pseudogene AC011471.1 2 OTTHUMG00000180755.1 overlapping_locus +32721 chr19 HAVANA gene 6135247 6193094 3447.0 + 0 ENSG00000130377.13 protein_coding ACSBG2 2 OTTHUMG00000180754.2 +32722 chr19 HAVANA gene 5993164 6199572 9094.0 - 0 ENSG00000087903.12 protein_coding RFX2 1 OTTHUMG00000180711.4 overlapping_locus +32723 chr19 HAVANA gene 6199405 6205121 216.0 + 0 ENSG00000284490.1 unprocessed_pseudogene AC011471.4 2 OTTHUMG00000191901.1 +32724 chr19 HAVANA gene 6259157 6259799 523.0 + 0 ENSG00000267563.1 antisense AC011471.2 2 OTTHUMG00000180758.1 +32725 chr19 HAVANA gene 6263068 6263469 402.0 - 0 ENSG00000280394.1 TEC AC011471.3 2 OTTHUMG00000180768.1 overlapping_locus +32726 chr19 HAVANA gene 6210379 6279948 4740.0 - 0 ENSG00000130382.8 protein_coding MLLT1 2 OTTHUMG00000180757.2 overlapping_locus +32727 chr19 HAVANA gene 6306142 6333629 1445.0 - 0 ENSG00000167769.4 protein_coding ACER1 2 OTTHUMG00000180777.1 +32728 chr19 HAVANA gene 6343761 6362149 559.0 - 0 ENSG00000269802.1 antisense AC011491.3 2 OTTHUMG00000180778.1 +32729 chr19 HAVANA gene 6361452 6368910 2278.0 + 0 ENSG00000125656.9 protein_coding CLPP 1 OTTHUMG00000180779.5 +32730 chr19 HAVANA gene 6372433 6375251 1455.0 + 0 ENSG00000125652.7 protein_coding ALKBH7 2 OTTHUMG00000180792.2 +32731 chr19 HAVANA gene 6375148 6379058 3911.0 - 0 ENSG00000125650.4 protein_coding PSPN 2 OTTHUMG00000168086.3 +32732 chr19 ENSEMBL gene 6389638 6389703 66.0 - 0 ENSG00000274390.1 miRNA MIR6885 3 +32733 chr19 HAVANA gene 6386762 6390400 447.0 - 0 ENSG00000269444.1 sense_overlapping AC011491.2 2 OTTHUMG00000180793.1 ncRNA_host,overlapping_locus +32734 chr19 ENSEMBL gene 6392921 6392983 63.0 - 0 ENSG00000273758.1 miRNA MIR6790 3 +32735 chr19 HAVANA gene 6379569 6393981 3134.0 - 0 ENSG00000125651.13 protein_coding GTF2F1 1 OTTHUMG00000168087.3 ncRNA_host,overlapping_locus +32736 chr19 HAVANA gene 6393794 6412404 705.0 + 0 ENSG00000214347.8 transcribed_unitary_pseudogene AC011491.1 2 OTTHUMG00000153226.8 +32737 chr19 ENSEMBL gene 6416410 6416511 102.0 - 0 ENSG00000284159.1 miRNA MIR3940 3 +32738 chr19 HAVANA gene 6413348 6424794 4563.0 - 0 ENSG00000088247.17 protein_coding KHSRP 1 OTTHUMG00000180850.3 ncRNA_host +32739 chr19 HAVANA gene 6426037 6433779 1649.0 - 0 ENSG00000181240.13 protein_coding SLC25A41 2 OTTHUMG00000180851.2 +32740 chr19 HAVANA gene 6436079 6465203 4859.0 - 0 ENSG00000125648.14 protein_coding SLC25A23 1 OTTHUMG00000180852.4 +32741 chr19 HAVANA gene 6463777 6467221 1592.0 + 0 ENSG00000130545.15 protein_coding CRB3 2 OTTHUMG00000181828.1 +32742 chr19 HAVANA gene 6469465 6470152 688.0 + 0 ENSG00000275234.1 antisense AC010503.4 2 OTTHUMG00000186556.1 +32743 chr19 HAVANA gene 6467207 6482557 4657.0 - 0 ENSG00000205744.9 protein_coding DENND1C 2 OTTHUMG00000180853.4 +32744 chr19 HAVANA gene 6494320 6494805 296.0 + 0 ENSG00000268203.1 antisense AC010503.2 2 OTTHUMG00000181911.1 overlapping_locus +32745 chr19 HAVANA gene 6494320 6495025 520.0 + 0 ENSG00000268191.1 antisense AC010503.1 2 OTTHUMG00000181912.1 overlapping_locus +32746 chr19 HAVANA gene 6494319 6502848 3466.0 - 0 ENSG00000104833.11 protein_coding TUBB4A 1 OTTHUMG00000181829.4 +32747 chr19 HAVANA gene 6530999 6535928 1665.0 + 0 ENSG00000125657.4 protein_coding TNFSF9 2 OTTHUMG00000181831.2 +32748 chr19 HAVANA gene 6552358 6554494 540.0 - 0 ENSG00000268742.1 processed_pseudogene AC010503.3 1 OTTHUMG00000181832.1 pseudo_consens +32749 chr19 HAVANA gene 6562123 6563848 717.0 - 0 ENSG00000269546.1 processed_pseudogene CLIC4P2 1 OTTHUMG00000181833.1 pseudo_consens +32750 chr19 ENSEMBL gene 6572956 6573057 102.0 - 0 ENSG00000199223.1 misc_RNA RF00019 3 +32751 chr19 HAVANA gene 6593329 6594055 727.0 + 0 ENSG00000268785.1 processed_pseudogene RPL7P50 1 OTTHUMG00000157978.2 pseudo_consens +32752 chr19 HAVANA gene 6583183 6604103 1532.0 - 0 ENSG00000125726.10 protein_coding CD70 1 OTTHUMG00000181834.3 +32753 chr19 HAVANA gene 6661253 6670588 4778.0 - 0 ENSG00000125735.10 protein_coding TNFSF14 2 OTTHUMG00000181835.3 +32754 chr19 HAVANA gene 6716386 6717742 1357.0 - 0 ENSG00000276980.1 sense_intronic AC008760.2 2 OTTHUMG00000186561.1 overlapping_locus +32755 chr19 HAVANA gene 6677704 6730562 8328.0 - 0 ENSG00000125730.16 protein_coding C3 2 OTTHUMG00000150335.6 overlapping_locus +32756 chr19 ENSEMBL gene 6736712 6736778 67.0 - 0 ENSG00000283950.1 miRNA MIR6791 3 +32757 chr19 HAVANA gene 6729914 6737603 3213.0 - 0 ENSG00000125734.15 protein_coding GPR108 1 OTTHUMG00000170129.5 ncRNA_host,overlapping_locus +32758 chr19 HAVANA gene 6748293 6751467 686.0 - 0 ENSG00000269680.1 antisense AC008760.1 2 OTTHUMG00000181913.1 +32759 chr19 HAVANA gene 6737925 6751526 3982.0 + 0 ENSG00000125733.17 protein_coding TRIP10 1 OTTHUMG00000150255.5 +32760 chr19 HAVANA gene 6752160 6767588 5716.0 - 0 ENSG00000125731.12 protein_coding SH2D3A 2 OTTHUMG00000181868.2 +32761 chr19 HAVANA gene 6772714 6857366 4305.0 + 0 ENSG00000141968.7 protein_coding VAV1 2 OTTHUMG00000181965.2 +32762 chr19 HAVANA gene 6894994 6896832 1839.0 - 0 ENSG00000280091.1 TEC AC020895.2 2 OTTHUMG00000181967.1 +32763 chr19 HAVANA gene 6898299 6898686 272.0 + 0 ENSG00000269385.1 unprocessed_pseudogene AC020895.1 2 OTTHUMG00000181968.1 overlapping_locus +32764 chr19 ENSEMBL gene 6928345 6928629 285.0 + 0 ENSG00000276568.1 misc_RNA RF00017 3 +32765 chr19 HAVANA gene 6887566 6940459 3707.0 + 0 ENSG00000174837.14 protein_coding ADGRE1 1 OTTHUMG00000181966.2 ncRNA_host,overlapping_locus +32766 chr19 HAVANA gene 6953211 6954904 515.0 + 0 ENSG00000268845.1 antisense AC025278.1 2 OTTHUMG00000181969.1 +32767 chr19 HAVANA gene 6952500 6997872 3321.0 - 0 ENSG00000268758.7 transcribed_unprocessed_pseudogene ADGRE4P 2 OTTHUMG00000177251.4 +32768 chr19 HAVANA gene 7005012 7006074 1063.0 - 0 ENSG00000269761.1 processed_pseudogene FLJ25758 1 OTTHUMG00000181970.1 pseudo_consens +32769 chr19 HAVANA gene 7011884 7012679 796.0 + 0 ENSG00000283679.1 processed_pseudogene AC025278.2 1 OTTHUMG00000181971.2 pseudo_consens +32770 chr19 HAVANA gene 7018969 7021450 860.0 - 0 ENSG00000196589.6 protein_coding MBD3L2B 2 OTTHUMG00000181972.2 +32771 chr19 HAVANA gene 7030578 7033011 778.0 + 0 ENSG00000237247.6 protein_coding MBD3L5 2 OTTHUMG00000181973.1 +32772 chr19 HAVANA gene 7037748 7040179 775.0 - 0 ENSG00000205718.9 protein_coding MBD3L4 2 OTTHUMG00000181974.1 +32773 chr19 HAVANA gene 7049321 7051735 793.0 + 0 ENSG00000230522.5 protein_coding MBD3L2 2 OTTHUMG00000181975.1 +32774 chr19 HAVANA gene 7056209 7058640 775.0 - 0 ENSG00000182315.9 protein_coding MBD3L3 2 OTTHUMG00000181976.1 +32775 chr19 HAVANA gene 7069444 7087968 6018.0 + 0 ENSG00000130544.11 protein_coding ZNF557 2 OTTHUMG00000181977.2 +32776 chr19 HAVANA gene 7112255 7294034 10451.0 - 0 ENSG00000171105.13 protein_coding INSR 1 OTTHUMG00000181992.2 +32777 chr19 HAVANA gene 7348943 7383385 1558.0 + 0 ENSG00000263264.1 protein_coding AC119396.1 1 OTTHUMG00000177340.4 overlapping_locus +32778 chr19 HAVANA gene 7390522 7395039 363.0 - 0 ENSG00000267852.1 antisense AC119396.2 2 OTTHUMG00000182042.1 +32779 chr19 HAVANA gene 7395113 7472477 6235.0 + 0 ENSG00000104880.17 protein_coding ARHGEF18 2 OTTHUMG00000177342.4 overlapping_locus +32780 chr19 HAVANA gene 7382834 7472477 4964.0 + 0 ENSG00000268861.6 protein_coding AC008878.3 2 OTTHUMG00000177341.3 overlapping_locus +32781 chr19 HAVANA gene 7476875 7497449 1466.0 - 0 ENSG00000104883.7 protein_coding PEX11G 2 OTTHUMG00000182044.1 +32782 chr19 HAVANA gene 7492976 7508450 2912.0 + 0 ENSG00000198723.10 protein_coding TEX45 2 OTTHUMG00000157183.5 overlapping_locus +32783 chr19 HAVANA gene 7507052 7519622 634.0 + 0 ENSG00000267952.1 protein_coding AC008878.1 1 OTTHUMG00000150187.3 overlapping_locus +32784 chr19 HAVANA gene 7519916 7520460 293.0 - 0 ENSG00000269371.1 antisense AC008878.4 2 OTTHUMG00000182382.1 +32785 chr19 HAVANA gene 7515292 7521026 2069.0 + 0 ENSG00000198816.6 protein_coding ZNF358 2 OTTHUMG00000182582.3 overlapping_locus +32786 chr19 HAVANA gene 7522626 7534009 3956.0 + 0 ENSG00000090674.15 protein_coding MCOLN1 2 OTTHUMG00000182046.4 overlapping_locus +32787 chr19 HAVANA gene 7533595 7540059 942.0 + 0 ENSG00000268614.1 protein_coding AC008878.2 2 OTTHUMG00000182093.2 overlapping_locus +32788 chr19 HAVANA gene 7534004 7561764 7055.0 + 0 ENSG00000032444.16 protein_coding PNPLA6 1 OTTHUMG00000182094.3 overlapping_locus +32789 chr19 ENSEMBL gene 7617439 7617505 67.0 + 0 ENSG00000273657.1 miRNA MIR6792 3 +32790 chr19 HAVANA gene 7595902 7618304 4845.0 + 0 ENSG00000076826.9 protein_coding CAMSAP3 2 OTTHUMG00000182096.3 ncRNA_host +32791 chr19 HAVANA gene 7619525 7629565 4673.0 - 0 ENSG00000076924.11 protein_coding XAB2 2 OTTHUMG00000182404.1 +32792 chr19 HAVANA gene 7629737 7631956 2220.0 + 0 ENSG00000229833.9 protein_coding PET100 2 OTTHUMG00000182394.3 overlapping_locus +32793 chr19 HAVANA gene 7631611 7633748 799.0 - 0 ENSG00000174788.9 protein_coding PCP2 2 OTTHUMG00000182405.2 +32794 chr19 HAVANA gene 7633766 7636990 843.0 - 0 ENSG00000268204.1 antisense AC008763.1 2 OTTHUMG00000182406.1 +32795 chr19 HAVANA gene 7629796 7643048 1366.0 + 0 ENSG00000268400.5 protein_coding AC008763.2 2 OTTHUMG00000182395.1 overlapping_locus +32796 chr19 HAVANA gene 7636881 7647873 6036.0 + 0 ENSG00000076944.15 protein_coding STXBP2 1 OTTHUMG00000182396.5 overlapping_locus +32797 chr19 HAVANA gene 7665717 7666476 458.0 + 0 ENSG00000269228.1 processed_pseudogene RPS27AP19 1 OTTHUMG00000182516.1 pseudo_consens +32798 chr19 HAVANA gene 7669044 7670454 520.0 + 0 ENSG00000104918.7 protein_coding RETN 2 OTTHUMG00000182503.3 +32799 chr19 HAVANA gene 7676628 7679826 1906.0 + 0 ENSG00000183019.7 protein_coding MCEMP1 1 OTTHUMG00000182440.2 overlapping_locus +32800 chr19 HAVANA gene 7678501 7682854 777.0 + 0 ENSG00000269711.1 protein_coding AC008763.3 2 OTTHUMG00000182441.5 overlapping_locus +32801 chr19 HAVANA gene 7680843 7687703 5669.0 + 0 ENSG00000181029.8 protein_coding TRAPPC5 2 OTTHUMG00000182589.4 overlapping_locus +32802 chr19 HAVANA gene 7688758 7702146 2451.0 - 0 ENSG00000104921.14 protein_coding FCER2 2 OTTHUMG00000182517.3 +32803 chr19 HAVANA gene 7728957 7733906 1754.0 - 0 ENSG00000182566.13 protein_coding CLEC4G 2 OTTHUMG00000182519.3 +32804 chr19 HAVANA gene 7739994 7747564 4413.0 - 0 ENSG00000090659.17 protein_coding CD209 1 OTTHUMG00000182530.3 +32805 chr19 HAVANA gene 7750684 7751161 478.0 + 0 ENSG00000242636.1 processed_pseudogene RPL21P129 1 OTTHUMG00000157980.1 pseudo_consens +32806 chr19 HAVANA gene 7763149 7769605 4066.0 + 0 ENSG00000104938.16 protein_coding CLEC4M 2 OTTHUMG00000182432.3 +32807 chr19 HAVANA gene 7787549 7790621 870.0 + 0 ENSG00000268297.1 unprocessed_pseudogene CLEC4GP1 2 OTTHUMG00000182531.2 +32808 chr19 HAVANA gene 7813615 7814425 497.0 - 0 ENSG00000269763.1 processed_pseudogene EXOSC3P2 2 OTTHUMG00000182506.1 +32809 chr19 HAVANA gene 7830233 7864976 6252.0 + 0 ENSG00000142459.8 protein_coding EVI5L 2 OTTHUMG00000182454.3 +32810 chr19 HAVANA gene 7870561 7871296 667.0 + 0 ENSG00000268120.1 lincRNA AC010336.3 2 OTTHUMG00000182532.1 +32811 chr19 HAVANA gene 7868719 7874379 4456.0 - 0 ENSG00000183248.11 protein_coding PRR36 2 OTTHUMG00000182504.7 +32812 chr19 HAVANA gene 7879445 7880120 676.0 - 0 ENSG00000269153.1 processed_pseudogene LYPLA2P2 1 OTTHUMG00000182507.1 pseudo_consens +32813 chr19 ENSEMBL gene 7886977 7887096 120.0 - 0 ENSG00000285674.1 rRNA_pseudogene AC010336.7 3 +32814 chr19 ENSEMBL gene 7886977 7887096 120.0 - 0 ENSG00000199900.1 rRNA RNA5SP463 3 +32815 chr19 HAVANA gene 7888505 7902021 4329.0 + 0 ENSG00000171017.10 protein_coding LRRC8E 2 OTTHUMG00000182455.5 +32816 chr19 HAVANA gene 7898804 7903542 4739.0 - 0 ENSG00000214248.2 antisense AC010336.1 2 OTTHUMG00000182572.2 +32817 chr19 HAVANA gene 7912648 7913518 438.0 - 0 ENSG00000268149.1 antisense AC010336.4 2 OTTHUMG00000182573.1 +32818 chr19 HAVANA gene 7903843 7914478 5145.0 + 0 ENSG00000076984.17 protein_coding MAP2K7 2 OTTHUMG00000137368.3 +32819 chr19 HAVANA gene 7916145 7919097 1516.0 + 0 ENSG00000260001.6 protein_coding TGFBR3L 2 OTTHUMG00000175717.3 +32820 chr19 HAVANA gene 7918652 7919157 506.0 - 0 ENSG00000260500.1 antisense AC010336.2 2 OTTHUMG00000175718.1 +32821 chr19 HAVANA gene 7920316 7923250 2000.0 + 0 ENSG00000104976.11 protein_coding SNAPC2 2 OTTHUMG00000182456.1 +32822 chr19 HAVANA gene 7924485 7926166 1274.0 - 0 ENSG00000178531.5 protein_coding CTXN1 2 OTTHUMG00000182480.2 +32823 chr19 HAVANA gene 7926001 7926810 714.0 + 0 ENSG00000269139.2 processed_transcript AC010336.5 2 OTTHUMG00000182505.2 +32824 chr19 HAVANA gene 7926718 7943920 4888.0 - 0 ENSG00000104980.7 protein_coding TIMM44 2 OTTHUMG00000182478.4 +32825 chr19 HAVANA gene 7959123 7960012 528.0 + 0 ENSG00000269813.1 antisense AC010336.6 2 OTTHUMG00000182574.1 +32826 chr19 HAVANA gene 7958579 8005659 6956.0 - 0 ENSG00000066044.14 protein_coding ELAVL1 1 OTTHUMG00000182470.3 +32827 chr19 HAVANA gene 8008729 8016025 421.0 + 0 ENSG00000267939.1 lincRNA AC008946.1 2 OTTHUMG00000182575.1 +32828 chr19 HAVANA gene 8052767 8062650 989.0 + 0 ENSG00000131142.13 protein_coding CCL25 2 OTTHUMG00000141287.2 +32829 chr19 HAVANA gene 8065402 8149846 10113.0 - 0 ENSG00000142449.12 protein_coding FBN3 1 OTTHUMG00000182462.5 +32830 chr19 HAVANA gene 8173272 8175567 847.0 + 0 ENSG00000269651.1 unprocessed_pseudogene AC022146.1 1 OTTHUMG00000182508.2 pseudo_consens +32831 chr19 HAVANA gene 8222153 8239648 348.0 - 0 ENSG00000271717.1 antisense AC022146.2 2 OTTHUMG00000185624.1 +32832 chr19 HAVANA gene 8206736 8262421 4059.0 + 0 ENSG00000090661.11 protein_coding CERS4 1 OTTHUMG00000172570.5 +32833 chr19 HAVANA gene 8302127 8308356 2277.0 - 0 ENSG00000167775.10 protein_coding CD320 2 OTTHUMG00000182457.2 overlapping_locus +32834 chr19 HAVANA gene 8308283 8321379 580.0 - 0 ENSG00000167774.2 protein_coding AC010323.1 2 OTTHUMG00000182458.1 overlapping_locus +32835 chr19 HAVANA gene 8308768 8321396 1413.0 - 0 ENSG00000267855.5 protein_coding NDUFA7 2 OTTHUMG00000182459.3 overlapping_locus +32836 chr19 HAVANA gene 8321158 8323340 2119.0 + 0 ENSG00000233927.4 protein_coding RPS28 2 OTTHUMG00000182460.3 +32837 chr19 HAVANA gene 8322584 8343262 3594.0 - 0 ENSG00000186994.11 protein_coding KANK3 2 OTTHUMG00000182461.3 +32838 chr19 HAVANA gene 8346517 8347687 594.0 + 0 ENSG00000268884.1 processed_pseudogene AC010323.2 1 OTTHUMG00000182590.1 pseudo_consens +32839 chr19 HAVANA gene 8363289 8374373 2482.0 + 0 ENSG00000167772.11 protein_coding ANGPTL4 2 OTTHUMG00000182273.5 +32840 chr19 ENSEMBL gene 8389290 8389380 91.0 - 0 ENSG00000265390.1 miRNA MIR4999 3 +32841 chr19 HAVANA gene 8374373 8390685 1156.0 - 0 ENSG00000269386.5 antisense RAB11B-AS1 2 OTTHUMG00000182274.1 ncRNA_host +32842 chr19 HAVANA gene 8389981 8404434 2470.0 + 0 ENSG00000185236.11 protein_coding RAB11B 1 OTTHUMG00000182278.3 +32843 chr19 HAVANA gene 8423355 8427827 511.0 - 0 ENSG00000268931.1 antisense AC136469.1 2 OTTHUMG00000182283.1 +32844 chr19 HAVANA gene 8413270 8439017 2216.0 + 0 ENSG00000099785.10 protein_coding MARCH2 2 OTTHUMG00000182282.4 +32845 chr19 HAVANA gene 8444570 8445597 1028.0 - 0 ENSG00000279827.1 TEC AC136469.2 2 OTTHUMG00000182427.1 +32846 chr19 HAVANA gene 8444767 8489114 5614.0 + 0 ENSG00000099783.11 protein_coding HNRNPM 1 OTTHUMG00000182383.6 +32847 chr19 HAVANA gene 8490056 8503112 3763.0 - 0 ENSG00000133246.11 protein_coding PRAM1 2 OTTHUMG00000167924.4 +32848 chr19 HAVANA gene 8509678 8514164 2758.0 - 0 ENSG00000133250.13 protein_coding ZNF414 2 OTTHUMG00000182240.4 +32849 chr19 HAVANA gene 8549506 8550139 297.0 + 0 ENSG00000268618.1 antisense AC092316.1 2 OTTHUMG00000182428.1 +32850 chr19 HAVANA gene 8520790 8577577 8550.0 - 0 ENSG00000142347.17 protein_coding MYO1F 2 OTTHUMG00000156005.6 +32851 chr19 HAVANA gene 8581160 8582715 388.0 + 0 ENSG00000267986.1 antisense AC130469.1 2 OTTHUMG00000182429.1 +32852 chr19 HAVANA gene 8580242 8610735 5703.0 - 0 ENSG00000142303.13 protein_coding ADAMTS10 1 OTTHUMG00000182216.8 +32853 chr19 HAVANA gene 8630671 8638649 478.0 + 0 ENSG00000268480.1 lincRNA LINC01862 2 OTTHUMG00000182192.1 +32854 chr19 HAVANA gene 8676844 8677584 275.0 + 0 ENSG00000261866.2 processed_pseudogene AC243312.1 2 OTTHUMG00000177852.2 +32855 chr19 HAVANA gene 8695721 8696321 601.0 - 0 ENSG00000279426.1 TEC AC243312.2 2 OTTHUMG00000182193.1 +32856 chr19 HAVANA gene 8697397 8698822 1426.0 - 0 ENSG00000181786.4 protein_coding ACTL9 2 OTTHUMG00000182194.2 retrogene +32857 chr19 HAVANA gene 8728735 8729204 470.0 - 0 ENSG00000269244.1 processed_pseudogene RPL23AP78 1 OTTHUMG00000157985.2 pseudo_consens +32858 chr19 HAVANA gene 8721634 8732160 1755.0 + 0 ENSG00000181733.3 protein_coding OR2Z1 2 OTTHUMG00000182195.3 +32859 chr19 HAVANA gene 8778665 8778861 197.0 - 0 ENSG00000268922.1 processed_pseudogene AC012616.1 2 OTTHUMG00000182548.2 +32860 chr19 HAVANA gene 8821501 8824110 537.0 + 0 ENSG00000269300.1 antisense AC008734.1 2 OTTHUMG00000182197.1 +32861 chr19 HAVANA gene 8806170 8832328 8184.0 - 0 ENSG00000167785.8 protein_coding ZNF558 2 OTTHUMG00000182196.4 +32862 chr19 HAVANA gene 8833065 8833541 477.0 + 0 ENSG00000269400.1 sense_intronic AC008734.2 2 OTTHUMG00000182199.1 overlapping_locus +32863 chr19 HAVANA gene 8832398 8843340 958.0 + 0 ENSG00000170948.3 protein_coding MBD3L1 2 OTTHUMG00000182198.2 overlapping_locus +32864 chr19 HAVANA gene 8848844 8981342 43830.0 - 0 ENSG00000181143.15 protein_coding MUC16 2 OTTHUMG00000169191.3 +32865 chr19 HAVANA gene 9019344 9019984 323.0 + 0 ENSG00000267332.1 processed_pseudogene BOLA3P2 1 OTTHUMG00000179928.1 pseudo_consens +32866 chr19 HAVANA gene 9083112 9083398 287.0 - 0 ENSG00000267154.1 unprocessed_pseudogene OR1M4P 2 OTTHUMG00000179929.1 +32867 chr19 HAVANA gene 9087061 9095669 2588.0 + 0 ENSG00000170929.6 protein_coding OR1M1 2 OTTHUMG00000179930.2 +32868 chr19 HAVANA gene 9100407 9107475 3062.0 - 0 ENSG00000170923.3 protein_coding OR7G2 2 OTTHUMG00000179931.3 +32869 chr19 HAVANA gene 9114828 9115763 936.0 - 0 ENSG00000161807.3 protein_coding OR7G1 2 OTTHUMG00000168067.2 +32870 chr19 HAVANA gene 9122160 9122492 333.0 - 0 ENSG00000275787.1 unprocessed_pseudogene OR7G15P 2 OTTHUMG00000187962.1 +32871 chr19 HAVANA gene 9126012 9126950 939.0 - 0 ENSG00000170920.2 protein_coding OR7G3 2 OTTHUMG00000165520.2 +32872 chr19 HAVANA gene 9140380 9163424 5065.0 + 0 ENSG00000130803.14 protein_coding ZNF317 2 OTTHUMG00000179932.1 +32873 chr19 HAVANA gene 9182369 9183048 334.0 - 0 ENSG00000267418.1 processed_pseudogene ELOCP29 1 OTTHUMG00000179933.1 pseudo_consens +32874 chr19 HAVANA gene 9178979 9188817 3460.0 + 0 ENSG00000188000.4 protein_coding OR7D2 2 OTTHUMG00000179934.2 +32875 chr19 HAVANA gene 9191286 9192170 885.0 + 0 ENSG00000267775.1 unprocessed_pseudogene OR7E16P 1 OTTHUMG00000179935.1 pseudo_consens +32876 chr19 HAVANA gene 9198354 9210067 5937.0 + 0 ENSG00000187847.4 transcribed_unprocessed_pseudogene OR7E25P 1 OTTHUMG00000154384.2 pseudo_consens +32877 chr19 HAVANA gene 9210276 9219589 4986.0 - 0 ENSG00000174667.4 protein_coding OR7D4 2 OTTHUMG00000179936.2 +32878 chr19 HAVANA gene 9235144 9236076 933.0 + 0 ENSG00000188314.3 unprocessed_pseudogene OR7D1P 1 OTTHUMG00000179937.1 pseudo_consens +32879 chr19 HAVANA gene 9247344 9252625 1870.0 + 0 ENSG00000237521.3 protein_coding OR7E24 2 OTTHUMG00000179938.3 +32880 chr19 HAVANA gene 9261015 9261716 702.0 - 0 ENSG00000180926.6 unprocessed_pseudogene OR7E18P 2 OTTHUMG00000179939.1 +32881 chr19 HAVANA gene 9265440 9268819 968.0 - 0 ENSG00000225980.4 transcribed_unprocessed_pseudogene OR7E19P 1 OTTHUMG00000179940.2 pseudo_consens +32882 chr19 HAVANA gene 9278448 9279369 922.0 - 0 ENSG00000226480.1 unprocessed_pseudogene OR7H1P 2 OTTHUMG00000154386.1 +32883 chr19 HAVANA gene 9291515 9294482 405.0 + 0 ENSG00000267510.1 antisense AC011451.1 2 OTTHUMG00000180129.1 +32884 chr19 HAVANA gene 9294275 9309838 3623.0 - 0 ENSG00000196110.7 protein_coding ZNF699 2 OTTHUMG00000179941.1 +32885 chr19 HAVANA gene 9348106 9348703 598.0 - 0 ENSG00000270614.1 processed_pseudogene AC011451.2 1 OTTHUMG00000184871.2 pseudo_consens +32886 chr19 HAVANA gene 9323772 9351162 6783.0 + 0 ENSG00000188321.13 protein_coding ZNF559 1 OTTHUMG00000179942.5 overlapping_locus +32887 chr19 HAVANA gene 9324174 9382617 4276.0 + 0 ENSG00000270011.7 protein_coding ZNF559-ZNF177 2 OTTHUMG00000183958.5 overlapping_locus +32888 chr19 HAVANA gene 9363020 9382617 2755.0 + 0 ENSG00000188629.12 protein_coding ZNF177 1 OTTHUMG00000179943.2 overlapping_locus +32889 chr19 HAVANA gene 9383581 9407055 935.0 - 0 ENSG00000283108.1 processed_transcript AC011451.3 2 OTTHUMG00000191557.1 +32890 chr19 HAVANA gene 9412461 9435578 5404.0 - 0 ENSG00000174652.18 protein_coding ZNF266 2 OTTHUMG00000179945.4 +32891 chr19 HAVANA gene 9466507 9498607 2836.0 - 0 ENSG00000198028.3 protein_coding ZNF560 2 OTTHUMG00000180130.1 +32892 chr19 HAVANA gene 9498678 9510079 656.0 + 0 ENSG00000267273.1 lincRNA AC008567.2 2 OTTHUMG00000180131.1 +32893 chr19 HAVANA gene 9518150 9519341 1192.0 + 0 ENSG00000260112.1 processed_pseudogene AC008567.1 1 OTTHUMG00000177065.3 pseudo_consens +32894 chr19 HAVANA gene 9523224 9538645 7545.0 - 0 ENSG00000130818.11 protein_coding ZNF426 1 OTTHUMG00000180132.3 +32895 chr19 HAVANA gene 9538733 9539734 865.0 + 0 ENSG00000278611.1 lincRNA ZNF426-DT 2 OTTHUMG00000186586.1 +32896 chr19 HAVANA gene 9560353 9584533 7251.0 - 0 ENSG00000197961.11 protein_coding ZNF121 2 OTTHUMG00000180134.4 +32897 chr19 HAVANA gene 9604680 9621399 6467.0 - 0 ENSG00000171469.10 protein_coding ZNF561 1 OTTHUMG00000157054.6 +32898 chr19 HAVANA gene 9621291 9645896 4659.0 + 0 ENSG00000267106.5 processed_transcript ZNF561-AS1 1 OTTHUMG00000180135.3 +32899 chr19 HAVANA gene 9641808 9675086 13007.0 - 0 ENSG00000171466.9 protein_coding ZNF562 1 OTTHUMG00000180205.3 +32900 chr19 HAVANA gene 9683294 9684073 780.0 - 0 ENSG00000239830.1 processed_pseudogene RPS4XP22 1 OTTHUMG00000157988.1 pseudo_consens +32901 chr19 HAVANA gene 9689924 9700776 2332.0 - 0 ENSG00000224689.9 transcribed_unprocessed_pseudogene ZNF812P 1 OTTHUMG00000167867.4 +32902 chr19 HAVANA gene 9721903 9722410 508.0 + 0 ENSG00000277587.1 lincRNA AC008759.3 2 OTTHUMG00000186593.1 +32903 chr19 HAVANA gene 9724008 9725086 983.0 - 0 ENSG00000267490.1 unprocessed_pseudogene AC008759.1 1 OTTHUMG00000180206.1 pseudo_consens +32904 chr19 HAVANA gene 9730853 9731943 600.0 + 0 ENSG00000267612.1 lincRNA AC008759.2 2 OTTHUMG00000180207.1 +32905 chr19 HAVANA gene 9756152 9756863 712.0 - 0 ENSG00000267370.1 unprocessed_pseudogene AC008752.3 2 OTTHUMG00000180209.1 overlapping_locus +32906 chr19 HAVANA gene 9774497 9774960 464.0 + 0 ENSG00000267741.1 processed_pseudogene UBE2L4 1 OTTHUMG00000180210.1 pseudo_consens +32907 chr19 HAVANA gene 9751993 9793180 3912.0 - 0 ENSG00000196605.7 protein_coding ZNF846 1 OTTHUMG00000180208.2 overlapping_locus +32908 chr19 HAVANA gene 9793621 9802301 408.0 + 0 ENSG00000266950.1 lincRNA AC008752.1 2 OTTHUMG00000180211.1 +32909 chr19 ENSEMBL gene 9819954 9820094 141.0 + 0 ENSG00000200237.1 snoRNA RF00156 3 +32910 chr19 HAVANA gene 9820141 9820455 315.0 + 0 ENSG00000267119.1 processed_pseudogene RPL10P15 2 OTTHUMG00000180213.1 +32911 chr19 HAVANA gene 9810267 9827816 2913.0 - 0 ENSG00000127452.8 protein_coding FBXL12 1 OTTHUMG00000180212.2 +32912 chr19 HAVANA gene 9827892 9830115 1931.0 + 0 ENSG00000198258.10 protein_coding UBL5 2 OTTHUMG00000180214.1 +32913 chr19 HAVANA gene 9834079 9835013 750.0 - 0 ENSG00000267289.1 lincRNA AC008752.2 2 OTTHUMG00000180387.1 +32914 chr19 HAVANA gene 9835257 9849682 4570.0 + 0 ENSG00000127445.13 protein_coding PIN1 2 OTTHUMG00000180388.1 +32915 chr19 HAVANA gene 9853718 9936552 2500.0 - 0 ENSG00000105088.8 protein_coding OLFM2 2 OTTHUMG00000180390.2 +32916 chr19 HAVANA gene 9995997 9997163 1167.0 + 0 ENSG00000267650.1 antisense AC008742.1 2 OTTHUMG00000180391.1 +32917 chr19 HAVANA gene 9959561 10010471 6750.0 - 0 ENSG00000080573.6 protein_coding COL5A3 2 OTTHUMG00000150019.1 +32918 chr19 HAVANA gene 10013249 10022279 2001.0 + 0 ENSG00000080511.3 protein_coding RDH8 2 OTTHUMG00000180392.1 +32919 chr19 ENSEMBL gene 10038354 10038413 60.0 + 0 ENSG00000266204.1 miRNA MIR5589 3 +32920 chr19 HAVANA gene 10037803 10074135 4959.0 + 0 ENSG00000167798.17 transcribed_unprocessed_pseudogene C3P1 2 OTTHUMG00000158555.2 +32921 chr19 HAVANA gene 10089032 10090377 1346.0 - 0 ENSG00000267387.1 antisense AC020931.1 2 OTTHUMG00000180394.1 +32922 chr19 HAVANA gene 10086122 10093252 4341.0 + 0 ENSG00000130813.17 protein_coding C19orf66 2 OTTHUMG00000180393.2 +32923 chr19 HAVANA gene 10092338 10102796 2181.0 - 0 ENSG00000130812.10 protein_coding ANGPTL6 2 OTTHUMG00000180395.1 +32924 chr19 ENSEMBL gene 10107651 10107735 85.0 + 0 ENSG00000209645.1 snoRNA SNORD105 3 +32925 chr19 ENSEMBL gene 10109757 10109835 79.0 + 0 ENSG00000238531.1 snoRNA SNORD105B 3 +32926 chr19 HAVANA gene 10106289 10111634 2583.0 + 0 ENSG00000130810.19 protein_coding PPAN 2 OTTHUMG00000156826.2 ncRNA_host,overlapping_locus +32927 chr19 HAVANA gene 10106223 10114780 2661.0 + 0 ENSG00000243207.6 protein_coding PPAN-P2RY11 1 OTTHUMG00000150165.5 ncRNA_host,overlapping_locus +32928 chr19 HAVANA gene 10111538 10115372 2295.0 + 0 ENSG00000244165.1 protein_coding P2RY11 2 OTTHUMG00000150166.3 overlapping_locus +32929 chr19 HAVANA gene 10115017 10119918 3486.0 - 0 ENSG00000130811.11 protein_coding EIF3G 1 OTTHUMG00000180396.2 +32930 chr19 ENSEMBL gene 10230413 10230485 73.0 + 0 ENSG00000264266.1 miRNA MIR4322 3 +32931 chr19 HAVANA gene 10133345 10231286 9796.0 - 0 ENSG00000130816.15 protein_coding DNMT1 1 OTTHUMG00000180397.3 overlapping_locus +32932 chr19 HAVANA gene 10221433 10231331 3643.0 - 0 ENSG00000267534.3 protein_coding S1PR2 2 OTTHUMG00000180399.3 overlapping_locus +32933 chr19 HAVANA gene 10259109 10260045 355.0 - 0 ENSG00000267105.1 antisense AC011511.3 2 OTTHUMG00000180402.1 overlapping_locus +32934 chr19 HAVANA gene 10251901 10260045 4070.0 + 0 ENSG00000105364.13 protein_coding MRPL4 2 OTTHUMG00000180400.2 +32935 chr19 HAVANA gene 10252268 10285108 918.0 - 0 ENSG00000266978.1 antisense AC011511.2 2 OTTHUMG00000180401.1 overlapping_locus +32936 chr19 HAVANA gene 10270835 10286615 3706.0 + 0 ENSG00000090339.8 protein_coding ICAM1 2 OTTHUMG00000180403.2 +32937 chr19 HAVANA gene 10286967 10288522 1427.0 + 0 ENSG00000105371.9 protein_coding ICAM4 2 OTTHUMG00000180405.2 +32938 chr19 HAVANA gene 10285801 10289019 3219.0 - 0 ENSG00000267607.1 antisense AC011511.5 2 OTTHUMG00000180404.2 +32939 chr19 HAVANA gene 10289981 10296778 3906.0 + 0 ENSG00000105376.4 protein_coding ICAM5 2 OTTHUMG00000180406.3 +32940 chr19 HAVANA gene 10304803 10309880 2431.0 - 0 ENSG00000220201.7 protein_coding ZGLP1 2 OTTHUMG00000152114.1 overlapping_locus +32941 chr19 HAVANA gene 10305427 10316009 2090.0 - 0 ENSG00000167807.15 protein_coding AC011511.1 2 OTTHUMG00000180407.3 overlapping_locus +32942 chr19 HAVANA gene 10310045 10316015 1371.0 - 0 ENSG00000267673.6 protein_coding FDX2 2 OTTHUMG00000141299.4 overlapping_locus +32943 chr19 HAVANA gene 10315471 10320678 1850.0 - 0 ENSG00000267303.1 protein_coding AC011511.4 2 OTTHUMG00000180408.1 overlapping_locus +32944 chr19 HAVANA gene 10316212 10333640 4981.0 - 0 ENSG00000161847.13 protein_coding RAVER1 2 OTTHUMG00000180409.2 overlapping_locus +32945 chr19 HAVANA gene 10333436 10336248 2813.0 + 0 ENSG00000274425.1 antisense AC114271.1 2 OTTHUMG00000186597.1 +32946 chr19 HAVANA gene 10333776 10339823 2950.0 - 0 ENSG00000076662.9 protein_coding ICAM3 1 OTTHUMG00000180410.2 +32947 chr19 HAVANA gene 10350529 10380676 6773.0 - 0 ENSG00000105397.13 protein_coding TYK2 1 OTTHUMG00000166373.3 +32948 chr19 ENSEMBL gene 10403458 10403538 81.0 - 0 ENSG00000284268.1 miRNA MIR1181 3 +32949 chr19 HAVANA gene 10391134 10420121 3041.0 - 0 ENSG00000105401.8 protein_coding CDC37 1 OTTHUMG00000180578.2 ncRNA_host +32950 chr19 HAVANA gene 10416773 10469631 6646.0 + 0 ENSG00000065989.15 protein_coding PDE4A 1 OTTHUMG00000180411.5 +32951 chr19 HAVANA gene 10490339 10491000 357.0 - 0 ENSG00000267197.1 sense_intronic AC011461.1 2 OTTHUMG00000180580.1 overlapping_locus +32952 chr19 HAVANA gene 10486120 10503741 3761.0 - 0 ENSG00000079999.13 protein_coding KEAP1 1 OTTHUMG00000180579.4 overlapping_locus +32953 chr19 HAVANA gene 10512742 10517931 2806.0 - 0 ENSG00000180739.13 protein_coding S1PR5 1 OTTHUMG00000180581.3 +32954 chr19 ENSEMBL gene 10551033 10551092 60.0 - 0 ENSG00000238364.1 snRNA RNU7-140P 3 +32955 chr19 ENSEMBL gene 10552122 10552204 83.0 + 0 ENSG00000221410.1 miRNA MIR1238 3 +32956 chr19 HAVANA gene 10543895 10553418 2278.0 + 0 ENSG00000130734.9 protein_coding ATG4D 1 OTTHUMG00000180582.2 ncRNA_host +32957 chr19 HAVANA gene 10553078 10566037 4267.0 - 0 ENSG00000129347.19 protein_coding KRI1 2 OTTHUMG00000150343.7 +32958 chr19 HAVANA gene 10566462 10569059 1503.0 - 0 ENSG00000129355.6 protein_coding CDKN2D 2 OTTHUMG00000180583.1 +32959 chr19 HAVANA gene 10572671 10587315 2214.0 - 0 ENSG00000129354.11 protein_coding AP1M2 1 OTTHUMG00000180584.2 +32960 chr19 HAVANA gene 10598001 10598965 965.0 - 0 ENSG00000271010.1 processed_pseudogene AC011475.1 1 OTTHUMG00000184892.1 pseudo_consens +32961 chr19 HAVANA gene 10602457 10644559 5216.0 + 0 ENSG00000129353.14 protein_coding SLC44A2 1 OTTHUMG00000180585.3 +32962 chr19 HAVANA gene 10651862 10653844 1983.0 - 0 ENSG00000267100.1 lincRNA ILF3-DT 2 OTTHUMG00000180586.1 +32963 chr19 HAVANA gene 10654261 10692417 11022.0 + 0 ENSG00000129351.17 protein_coding ILF3 2 OTTHUMG00000180587.2 +32964 chr19 HAVANA gene 10701430 10713437 3430.0 + 0 ENSG00000213339.8 protein_coding QTRT1 2 OTTHUMG00000180588.2 +32965 chr19 ENSEMBL gene 10718404 10718503 100.0 + 0 ENSG00000207972.1 miRNA MIR638 3 +32966 chr19 ENSEMBL gene 10780254 10780335 82.0 + 0 ENSG00000265879.1 miRNA MIR4748 3 +32967 chr19 ENSEMBL gene 10817426 10817496 71.0 - 0 ENSG00000207752.1 miRNA MIR199A1 3 +32968 chr19 ENSEMBL gene 10828973 10829035 63.0 + 0 ENSG00000275640.1 miRNA MIR6793 3 +32969 chr19 HAVANA gene 10718079 10833488 13443.0 + 0 ENSG00000079805.16 protein_coding DNM2 2 OTTHUMG00000180694.3 ncRNA_host +32970 chr19 HAVANA gene 10832438 10836318 1513.0 - 0 ENSG00000099203.6 protein_coding TMED1 1 OTTHUMG00000180696.2 +32971 chr19 HAVANA gene 10841839 10842250 412.0 + 0 ENSG00000267544.1 processed_pseudogene AC007229.1 1 OTTHUMG00000180698.1 pseudo_consens,overlapping_locus +32972 chr19 HAVANA gene 10836575 10869790 1565.0 + 0 ENSG00000214212.8 protein_coding C19orf38 2 OTTHUMG00000180697.1 overlapping_locus +32973 chr19 HAVANA gene 10871513 10923070 4455.0 + 0 ENSG00000142453.11 protein_coding CARM1 2 OTTHUMG00000180699.3 +32974 chr19 HAVANA gene 10922185 10928681 2518.0 - 0 ENSG00000130733.10 protein_coding YIPF2 1 OTTHUMG00000180796.3 +32975 chr19 HAVANA gene 10928733 10933535 1863.0 + 0 ENSG00000142444.6 protein_coding TIMM29 2 OTTHUMG00000180700.1 +32976 chr19 ENSEMBL gene 11011708 11012006 299.0 + 0 ENSG00000276757.1 misc_RNA RN7SL192P 3 +32977 chr19 HAVANA gene 11010917 11016011 366.0 - 0 ENSG00000266936.1 antisense AC011442.1 2 OTTHUMG00000180797.1 +32978 chr19 ENSEMBL gene 11033727 11033912 186.0 + 0 ENSG00000278643.1 misc_RNA RF02271 3 +32979 chr19 HAVANA gene 10960825 11079426 15778.0 + 0 ENSG00000127616.18 protein_coding SMARCA4 1 OTTHUMG00000169272.16 ncRNA_host +32980 chr19 ENSEMBL gene 11113474 11113534 61.0 + 0 ENSG00000284553.1 miRNA MIR6886 3 +32981 chr19 HAVANA gene 11089362 11133816 7718.0 + 0 ENSG00000130164.13 protein_coding LDLR 1 OTTHUMG00000171935.8 ncRNA_host +32982 chr19 HAVANA gene 11131520 11155808 2839.0 - 0 ENSG00000161888.11 protein_coding SPC24 1 OTTHUMG00000180798.2 +32983 chr19 HAVANA gene 11164267 11197791 7638.0 - 0 ENSG00000197256.10 protein_coding KANK2 1 OTTHUMG00000180799.4 +32984 chr19 HAVANA gene 11208195 11208702 508.0 + 0 ENSG00000279807.1 TEC AC011472.5 2 OTTHUMG00000180828.1 overlapping_locus +32985 chr19 HAVANA gene 11203628 11216168 569.0 + 0 ENSG00000267082.1 antisense AC011472.1 2 OTTHUMG00000180827.1 overlapping_locus +32986 chr19 HAVANA gene 11221083 11221573 491.0 + 0 ENSG00000273733.1 antisense AC011472.4 2 OTTHUMG00000186603.1 +32987 chr19 HAVANA gene 11237450 11241943 1223.0 + 0 ENSG00000130173.13 protein_coding ANGPTL8 2 OTTHUMG00000180829.1 +32988 chr19 HAVANA gene 11199295 11262481 12435.0 - 0 ENSG00000130158.13 protein_coding DOCK6 2 OTTHUMG00000180826.2 +32989 chr19 HAVANA gene 11322156 11324195 906.0 + 0 ENSG00000267576.1 sense_intronic AC011472.3 2 OTTHUMG00000180836.1 overlapping_locus +32990 chr19 HAVANA gene 11300777 11324441 685.0 - 0 ENSG00000267174.5 3prime_overlapping_ncRNA AC011472.2 2 OTTHUMG00000180834.2 overlapping_locus +32991 chr19 HAVANA gene 11296139 11326996 1561.0 + 0 ENSG00000130167.13 protein_coding TSPAN16 1 OTTHUMG00000180833.1 overlapping_locus +32992 chr19 HAVANA gene 11322046 11346270 4417.0 - 0 ENSG00000105514.7 protein_coding RAB3D 2 OTTHUMG00000180835.2 overlapping_locus +32993 chr19 HAVANA gene 11342776 11346518 1606.0 - 0 ENSG00000105518.13 protein_coding TMEM205 1 OTTHUMG00000182021.2 overlapping_locus +32994 chr19 HAVANA gene 11344684 11354944 4064.0 + 0 ENSG00000183401.11 protein_coding CCDC159 2 OTTHUMG00000182022.2 +32995 chr19 HAVANA gene 11355386 11365698 3273.0 + 0 ENSG00000105520.10 protein_coding PLPPR2 1 OTTHUMG00000182023.2 +32996 chr19 HAVANA gene 11368123 11374935 682.0 - 0 ENSG00000267277.1 antisense AC024575.1 2 OTTHUMG00000182024.1 +32997 chr19 HAVANA gene 11374685 11376951 1684.0 + 0 ENSG00000173928.2 protein_coding SWSAP1 2 OTTHUMG00000182025.1 +32998 chr19 HAVANA gene 11377205 11384342 3079.0 - 0 ENSG00000187266.13 protein_coding EPOR 2 OTTHUMG00000182027.3 overlapping_locus +32999 chr19 ENSEMBL gene 11408772 11408880 109.0 + 0 ENSG00000202357.1 misc_RNA RF00019 3 +33000 chr19 HAVANA gene 11384341 11419342 4358.0 - 0 ENSG00000205517.12 protein_coding RGL3 1 OTTHUMG00000172898.11 overlapping_locus +33001 chr19 HAVANA gene 11420604 11435782 2681.0 - 0 ENSG00000198003.11 protein_coding CCDC151 1 OTTHUMG00000182028.2 +33002 chr19 HAVANA gene 11435288 11450968 5166.0 + 0 ENSG00000130175.9 protein_coding PRKCSH 2 OTTHUMG00000182029.2 +33003 chr19 HAVANA gene 11451326 11481046 4761.0 - 0 ENSG00000196361.9 protein_coding ELAVL3 2 OTTHUMG00000182030.3 overlapping_locus +33004 chr19 ENSEMBL gene 11495544 11495622 79.0 - 0 ENSG00000274713.1 miRNA MIR7974 3 +33005 chr19 HAVANA gene 11466240 11505698 727.0 - 0 ENSG00000267477.1 protein_coding AC008481.3 2 OTTHUMG00000182031.1 ncRNA_host,overlapping_locus +33006 chr19 HAVANA gene 11483427 11505923 3301.0 - 0 ENSG00000161914.9 protein_coding ZNF653 2 OTTHUMG00000182032.2 ncRNA_host,overlapping_locus +33007 chr19 ENSEMBL gene 11516047 11516330 284.0 - 0 ENSG00000244080.3 misc_RNA RN7SL833P 3 +33008 chr19 HAVANA gene 11521968 11522498 531.0 + 0 ENSG00000213304.3 processed_pseudogene AC008481.2 1 OTTHUMG00000157989.1 pseudo_consens +33009 chr19 HAVANA gene 11523436 11523831 396.0 + 0 ENSG00000213303.3 processed_pseudogene AC008481.1 1 OTTHUMG00000157992.1 pseudo_consens +33010 chr19 HAVANA gene 11505916 11529174 2370.0 - 0 ENSG00000130159.13 protein_coding ECSIT 1 OTTHUMG00000178590.5 ncRNA_host,overlapping_locus +33011 chr19 HAVANA gene 11538717 11550323 2887.0 + 0 ENSG00000130176.7 protein_coding CNN1 1 OTTHUMG00000182033.2 +33012 chr19 HAVANA gene 11551147 11559236 4173.0 - 0 ENSG00000130165.10 protein_coding ELOF1 1 OTTHUMG00000182034.3 +33013 chr19 HAVANA gene 11574660 11579008 2814.0 - 0 ENSG00000102575.11 protein_coding ACP5 2 OTTHUMG00000182036.3 +33014 chr19 HAVANA gene 11585246 11587135 976.0 + 0 ENSG00000249840.2 unprocessed_pseudogene GAPDHP76 1 OTTHUMG00000160071.2 pseudo_consens,overlapping_locus +33015 chr19 HAVANA gene 11559374 11619135 3827.0 + 0 ENSG00000198551.9 protein_coding ZNF627 1 OTTHUMG00000182035.2 overlapping_locus +33016 chr19 HAVANA gene 11648364 11652877 1407.0 + 0 ENSG00000267500.1 transcribed_unprocessed_pseudogene ZNF887P 2 OTTHUMG00000156530.1 overlapping_locus +33017 chr19 HAVANA gene 11666069 11667030 962.0 - 0 ENSG00000214223.4 processed_pseudogene HNRNPA1P10 1 OTTHUMG00000156531.1 pseudo_consens +33018 chr19 HAVANA gene 11680944 11686259 1592.0 + 0 ENSG00000267343.2 transcribed_unprocessed_pseudogene ZNF833P 2 OTTHUMG00000182038.2 overlapping_locus +33019 chr19 HAVANA gene 11639776 11686569 3383.0 + 0 ENSG00000197332.8 lincRNA AC008543.1 2 OTTHUMG00000182037.2 overlapping_locus +33020 chr19 HAVANA gene 11725961 11730783 491.0 - 0 ENSG00000266922.1 sense_intronic AC008543.3 2 OTTHUMG00000182241.1 overlapping_locus +33021 chr19 HAVANA gene 11721265 11739009 2459.0 - 0 ENSG00000197933.12 protein_coding ZNF823 1 OTTHUMG00000156528.4 overlapping_locus +33022 chr19 HAVANA gene 11756533 11759933 1383.0 - 0 ENSG00000220949.2 unprocessed_pseudogene AC008543.2 2 OTTHUMG00000156532.1 +33023 chr19 HAVANA gene 11767000 11784078 4748.0 + 0 ENSG00000197044.10 protein_coding ZNF441 2 OTTHUMG00000154449.4 +33024 chr19 HAVANA gene 11796084 11798598 2515.0 - 0 ENSG00000267646.1 antisense AC008543.5 2 OTTHUMG00000182300.1 +33025 chr19 HAVANA gene 11797667 11809622 3032.0 + 0 ENSG00000177599.12 protein_coding ZNF491 2 OTTHUMG00000156529.2 +33026 chr19 HAVANA gene 11814284 11835201 6427.0 + 0 ENSG00000171295.12 protein_coding ZNF440 1 OTTHUMG00000156403.4 +33027 chr19 HAVANA gene 11841241 11842439 442.0 - 0 ENSG00000267089.1 lincRNA AC008543.4 2 OTTHUMG00000182301.1 +33028 chr19 HAVANA gene 11856032 11858302 2271.0 + 0 ENSG00000278897.1 TEC AC020951.1 2 OTTHUMG00000182302.1 overlapping_locus +33029 chr19 HAVANA gene 11848726 11883750 5207.0 + 0 ENSG00000171291.8 protein_coding ZNF439 1 OTTHUMG00000156527.3 overlapping_locus +33030 chr19 HAVANA gene 11887784 11914329 2931.0 + 0 ENSG00000198429.9 protein_coding ZNF69 2 OTTHUMG00000156526.2 +33031 chr19 HAVANA gene 11925068 11950773 3319.0 + 0 ENSG00000196757.7 protein_coding ZNF700 2 OTTHUMG00000156421.4 overlapping_locus +33032 chr19 HAVANA gene 11939959 11953381 468.0 + 0 ENSG00000267274.1 sense_overlapping AC008770.3 2 OTTHUMG00000182305.1 overlapping_locus +33033 chr19 HAVANA gene 11925075 11979290 2219.0 + 0 ENSG00000267179.1 protein_coding AC008770.2 1 OTTHUMG00000182304.1 overlapping_locus +33034 chr19 HAVANA gene 11965037 11980381 2845.0 + 0 ENSG00000197054.11 protein_coding ZNF763 1 OTTHUMG00000156430.5 overlapping_locus +33035 chr19 ENSEMBL gene 11996809 11996916 108.0 + 0 ENSG00000252060.1 rRNA_pseudogene RNA5SP464 3 +33036 chr19 ENSEMBL gene 12027913 12028021 109.0 - 0 ENSG00000212497.1 rRNA_pseudogene RNA5SP465 3 +33037 chr19 HAVANA gene 12014732 12035741 3079.0 - 0 ENSG00000197647.11 protein_coding ZNF433 1 OTTHUMG00000156427.4 overlapping_locus +33038 chr19 HAVANA gene 11987617 12046275 5890.0 + 0 ENSG00000219665.8 processed_transcript ZNF433-AS1 2 OTTHUMG00000156428.2 +33039 chr19 HAVANA gene 12043805 12052939 1734.0 - 0 ENSG00000257446.3 protein_coding ZNF878 2 OTTHUMG00000169370.2 overlapping_locus +33040 chr19 HAVANA gene 12017888 12052967 542.0 - 0 ENSG00000257355.1 protein_coding AC008770.1 2 OTTHUMG00000169369.1 overlapping_locus +33041 chr19 ENSEMBL gene 12070164 12070271 108.0 + 0 ENSG00000252546.1 rRNA_pseudogene RNA5SP466 3 +33042 chr19 HAVANA gene 12064699 12081565 6620.0 + 0 ENSG00000223547.9 protein_coding ZNF844 1 OTTHUMG00000156405.4 +33043 chr19 ENSEMBL gene 12088245 12088346 102.0 - 0 ENSG00000199444.1 misc_RNA RF00019 3 +33044 chr19 HAVANA gene 12096424 12096915 492.0 + 0 ENSG00000237273.1 processed_pseudogene RSL24D1P8 1 OTTHUMG00000156414.1 pseudo_consens,overlapping_locus +33045 chr19 ENSEMBL gene 12106497 12106614 118.0 + 0 ENSG00000212576.1 rRNA_pseudogene RNA5SP467 3 +33046 chr19 HAVANA gene 12092263 12137235 7434.0 + 0 ENSG00000214189.9 transcribed_unprocessed_pseudogene ZNF788P 2 OTTHUMG00000156416.4 overlapping_locus +33047 chr19 HAVANA gene 12092843 12140407 4148.0 - 0 ENSG00000132010.15 protein_coding ZNF20 2 OTTHUMG00000156409.3 overlapping_locus +33048 chr19 HAVANA gene 12141806 12143322 1517.0 - 0 ENSG00000242615.1 transcribed_processed_pseudogene AC022415.1 2 OTTHUMG00000158017.1 overlapping_locus +33049 chr19 HAVANA gene 12142090 12156729 2204.0 - 0 ENSG00000257591.5 protein_coding ZNF625 2 OTTHUMG00000156407.2 overlapping_locus +33050 chr19 HAVANA gene 12132117 12156731 3639.0 - 0 ENSG00000213297.8 protein_coding ZNF625-ZNF20 2 OTTHUMG00000170135.1 overlapping_locus +33051 chr19 HAVANA gene 12163064 12189881 5425.0 + 0 ENSG00000196646.11 protein_coding ZNF136 1 OTTHUMG00000156429.6 +33052 chr19 HAVANA gene 12195015 12237767 3140.0 + 0 ENSG00000234773.7 transcribed_unprocessed_pseudogene AC012618.3 2 OTTHUMG00000156425.2 +33053 chr19 HAVANA gene 12260126 12260537 412.0 + 0 ENSG00000213293.4 processed_pseudogene AC012618.1 1 OTTHUMG00000158019.1 pseudo_consens +33054 chr19 HAVANA gene 12284337 12285185 849.0 + 0 ENSG00000234750.1 processed_pseudogene AC012618.2 1 OTTHUMG00000156399.1 pseudo_consens +33055 chr19 HAVANA gene 12224686 12294887 6061.0 - 0 ENSG00000197857.13 protein_coding ZNF44 2 OTTHUMG00000156424.2 +33056 chr19 HAVANA gene 12317477 12333720 2847.0 - 0 ENSG00000188868.13 protein_coding ZNF563 2 OTTHUMG00000156413.3 +33057 chr19 HAVANA gene 12345949 12365905 6569.0 - 0 ENSG00000198342.9 protein_coding ZNF442 2 OTTHUMG00000156411.3 +33058 chr19 HAVANA gene 12373609 12373731 123.0 + 0 ENSG00000231361.1 processed_pseudogene RPS29P23 1 OTTHUMG00000156401.1 pseudo_consens +33059 chr19 HAVANA gene 12379746 12383687 1829.0 - 0 ENSG00000248406.1 transcribed_unprocessed_pseudogene AC008758.3 2 OTTHUMG00000182409.1 overlapping_locus +33060 chr19 HAVANA gene 12390016 12401271 5055.0 - 0 ENSG00000196466.10 protein_coding ZNF799 2 OTTHUMG00000156408.3 overlapping_locus +33061 chr19 HAVANA gene 12379189 12401274 2593.0 - 0 ENSG00000268744.1 protein_coding AC008758.4 2 OTTHUMG00000156422.1 overlapping_locus +33062 chr19 HAVANA gene 12391949 12441082 617.0 - 0 ENSG00000268870.1 protein_coding AC008758.5 2 OTTHUMG00000182410.2 overlapping_locus +33063 chr19 HAVANA gene 12429707 12441112 2753.0 - 0 ENSG00000180855.15 protein_coding ZNF443 2 OTTHUMG00000156404.1 overlapping_locus +33064 chr19 HAVANA gene 12450935 12460705 695.0 + 0 ENSG00000234848.1 antisense AC008758.2 2 OTTHUMG00000156423.1 +33065 chr19 HAVANA gene 12433103 12484816 588.0 - 0 ENSG00000269755.1 protein_coding AC008758.6 2 OTTHUMG00000182413.1 overlapping_locus +33066 chr19 HAVANA gene 12502675 12504106 841.0 + 0 ENSG00000236483.1 unprocessed_pseudogene MTND2P40 2 OTTHUMG00000156417.1 +33067 chr19 HAVANA gene 12504665 12504890 226.0 + 0 ENSG00000232579.1 unprocessed_pseudogene MTCO1P27 2 OTTHUMG00000156412.1 +33068 chr19 HAVANA gene 12504905 12505976 428.0 + 0 ENSG00000230321.1 unprocessed_pseudogene MTCO2P27 2 OTTHUMG00000156415.1 +33069 chr19 HAVANA gene 12506249 12508030 621.0 + 0 ENSG00000234003.1 unprocessed_pseudogene MTATP6P27 2 OTTHUMG00000156410.1 +33070 chr19 HAVANA gene 12508129 12508263 135.0 + 0 ENSG00000235686.1 processed_pseudogene PPIAP20 2 OTTHUMG00000156419.1 +33071 chr19 HAVANA gene 12461184 12513854 5708.0 - 0 ENSG00000242852.6 protein_coding ZNF709 2 OTTHUMG00000156406.2 overlapping_locus +33072 chr19 HAVANA gene 12529768 12532973 533.0 - 0 ENSG00000269560.1 sense_intronic AC010422.4 2 OTTHUMG00000182614.1 overlapping_locus +33073 chr19 HAVANA gene 12461559 12551474 4505.0 - 0 ENSG00000196826.7 protein_coding AC008758.1 2 OTTHUMG00000162246.1 overlapping_locus +33074 chr19 HAVANA gene 12525370 12551542 3622.0 - 0 ENSG00000249709.7 protein_coding ZNF564 2 OTTHUMG00000156418.4 overlapping_locus +33075 chr19 HAVANA gene 12552597 12553644 543.0 + 0 ENSG00000230310.1 lincRNA AC010422.1 2 OTTHUMG00000156402.1 +33076 chr19 HAVANA gene 12559571 12561105 1214.0 + 0 ENSG00000213290.4 processed_pseudogene PGK1P2 1 OTTHUMG00000156420.3 pseudo_consens +33077 chr19 HAVANA gene 12525720 12580975 5857.0 - 0 ENSG00000269693.1 protein_coding AC010422.6 2 OTTHUMG00000182414.1 overlapping_locus +33078 chr19 HAVANA gene 12610918 12633840 6642.0 + 0 ENSG00000173875.13 protein_coding ZNF791 1 OTTHUMG00000156426.4 +33079 chr19 HAVANA gene 12577961 12640098 4921.0 - 0 ENSG00000188033.9 protein_coding ZNF490 1 OTTHUMG00000156398.2 overlapping_locus +33080 chr19 HAVANA gene 12643275 12643919 645.0 - 0 ENSG00000178464.6 processed_pseudogene RPL10P16 2 OTTHUMG00000156400.1 overlapping_locus +33081 chr19 HAVANA gene 12643831 12648397 838.0 - 0 ENSG00000269242.1 protein_coding AC010422.3 2 OTTHUMG00000182615.1 overlapping_locus +33082 chr19 HAVANA gene 12646511 12666742 5374.0 - 0 ENSG00000104774.12 protein_coding MAN2B1 1 OTTHUMG00000156397.4 overlapping_locus +33083 chr19 HAVANA gene 12664828 12669397 585.0 - 0 ENSG00000269590.1 protein_coding AC010422.5 2 OTTHUMG00000182616.2 overlapping_locus +33084 chr19 HAVANA gene 12668071 12669489 789.0 - 0 ENSG00000105583.10 protein_coding WDR83OS 2 OTTHUMG00000193390.3 overlapping_locus +33085 chr19 HAVANA gene 12670079 12671023 567.0 - 0 ENSG00000285583.1 antisense AC010422.7 2 OTTHUMG00000193421.1 +33086 chr19 HAVANA gene 12666800 12675832 2360.0 + 0 ENSG00000123154.11 protein_coding WDR83 2 OTTHUMG00000169356.2 +33087 chr19 HAVANA gene 12668071 12681834 5025.0 - 0 ENSG00000285589.1 protein_coding AC010422.8 2 OTTHUMG00000182617.5 overlapping_locus +33088 chr19 HAVANA gene 12675717 12681902 3006.0 - 0 ENSG00000095059.15 protein_coding DHPS 2 OTTHUMG00000182618.2 overlapping_locus +33089 chr19 HAVANA gene 12682693 12687279 635.0 - 0 ENSG00000268945.1 lincRNA AC010422.2 2 OTTHUMG00000182619.1 +33090 chr19 HAVANA gene 12687998 12688422 425.0 + 0 ENSG00000283980.1 protein_coding GNG14 2 OTTHUMG00000192021.2 +33091 chr19 HAVANA gene 12688922 12689238 272.0 + 0 ENSG00000267791.1 antisense AC018761.4 2 OTTHUMG00000180332.1 +33092 chr19 HAVANA gene 12688053 12696643 2114.0 - 0 ENSG00000132004.12 protein_coding FBXW9 1 OTTHUMG00000150152.3 +33093 chr19 ENSEMBL gene 12706449 12706518 70.0 - 0 ENSG00000209702.1 snoRNA SNORD41 3 +33094 chr19 HAVANA gene 12699194 12724011 7029.0 - 0 ENSG00000105576.15 protein_coding TNPO2 2 OTTHUMG00000180333.3 ncRNA_host +33095 chr19 HAVANA gene 12725517 12725886 97.0 - 0 ENSG00000267004.1 lincRNA AC018761.1 2 OTTHUMG00000180337.1 +33096 chr19 HAVANA gene 12730640 12734775 1402.0 - 0 ENSG00000123144.10 protein_coding TRIR 1 OTTHUMG00000180347.1 +33097 chr19 HAVANA gene 12737139 12748323 1652.0 + 0 ENSG00000198356.11 protein_coding ASNA1 2 OTTHUMG00000180355.2 +33098 chr19 HAVANA gene 12751702 12758458 2646.0 + 0 ENSG00000039987.6 protein_coding BEST2 2 OTTHUMG00000169293.3 +33099 chr19 HAVANA gene 12784539 12785101 388.0 - 0 ENSG00000267212.1 lincRNA AC018761.3 2 OTTHUMG00000180479.1 overlapping_locus +33100 chr19 ENSEMBL gene 12787128 12787192 65.0 + 0 ENSG00000263800.1 miRNA MIR5684 3 +33101 chr19 HAVANA gene 12791496 12793315 1820.0 + 0 ENSG00000171223.5 protein_coding JUNB 2 OTTHUMG00000180373.1 +33102 chr19 HAVANA gene 12796823 12801849 296.0 + 0 ENSG00000267062.1 antisense AC018761.2 2 OTTHUMG00000180480.1 +33103 chr19 HAVANA gene 12796820 12801859 2093.0 - 0 ENSG00000167815.11 protein_coding PRDX2 1 OTTHUMG00000134285.3 overlapping_locus +33104 chr19 HAVANA gene 12802031 12813581 1769.0 + 0 ENSG00000284491.2 protein_coding THSD8 2 OTTHUMG00000191900.3 overlapping_locus +33105 chr19 HAVANA gene 12806556 12815201 3645.0 + 0 ENSG00000104889.6 protein_coding RNASEH2A 2 OTTHUMG00000180481.3 overlapping_locus +33106 chr19 HAVANA gene 12825711 12832983 739.0 + 0 ENSG00000267424.1 antisense AC020934.1 2 OTTHUMG00000180485.1 +33107 chr19 HAVANA gene 12825478 12835428 2675.0 - 0 ENSG00000132026.13 protein_coding RTBDN 1 OTTHUMG00000180482.4 overlapping_locus +33108 chr19 ENSEMBL gene 12852260 12852327 68.0 + 0 ENSG00000276181.1 miRNA MIR6794 3 +33109 chr19 HAVANA gene 12763003 12872740 5950.0 - 0 ENSG00000095066.11 protein_coding HOOK2 2 OTTHUMG00000180372.3 overlapping_locus +33110 chr19 HAVANA gene 12833951 12874951 6533.0 + 0 ENSG00000105613.9 protein_coding MAST1 2 OTTHUMG00000180514.3 ncRNA_host +33111 chr19 HAVANA gene 12875211 12881468 2389.0 - 0 ENSG00000105612.8 protein_coding DNASE2 2 OTTHUMG00000180535.2 +33112 chr19 HAVANA gene 12880969 12884088 456.0 + 0 ENSG00000267735.1 antisense AC020934.2 2 OTTHUMG00000180560.1 +33113 chr19 HAVANA gene 12884422 12887199 1611.0 - 0 ENSG00000105610.5 protein_coding KLF1 2 OTTHUMG00000180536.3 +33114 chr19 HAVANA gene 12894133 12894880 748.0 + 0 ENSG00000240616.1 processed_pseudogene RPS6P25 1 OTTHUMG00000158022.1 pseudo_consens,overlapping_locus +33115 chr19 HAVANA gene 12891026 12914207 4136.0 + 0 ENSG00000105607.12 protein_coding GCDH 1 OTTHUMG00000180561.4 overlapping_locus +33116 chr19 HAVANA gene 12898786 12919276 1458.0 - 0 ENSG00000161860.7 protein_coding SYCE2 1 OTTHUMG00000180562.1 +33117 chr19 ENSEMBL gene 12920320 12920404 85.0 + 0 ENSG00000266721.1 miRNA MIR5695 3 +33118 chr19 HAVANA gene 12930522 12933296 241.0 + 0 ENSG00000266975.1 antisense FARSA-AS1 2 OTTHUMG00000180573.1 +33119 chr19 HAVANA gene 12922479 12934037 2435.0 - 0 ENSG00000179115.10 protein_coding FARSA 2 OTTHUMG00000180569.3 +33120 chr19 ENSEMBL gene 12940484 12940540 57.0 + 0 ENSG00000274417.1 miRNA MIR6515 3 +33121 chr19 HAVANA gene 12944118 12944487 270.0 - 0 ENSG00000267458.1 antisense AC092069.1 2 OTTHUMG00000180575.1 +33122 chr19 HAVANA gene 12938578 12944489 2714.0 + 0 ENSG00000179218.13 protein_coding CALR 2 OTTHUMG00000180574.2 ncRNA_host +33123 chr19 HAVANA gene 12945855 12953642 2449.0 + 0 ENSG00000179262.9 protein_coding RAD23A 2 OTTHUMG00000180723.3 +33124 chr19 HAVANA gene 12953119 12957236 1782.0 - 0 ENSG00000179271.2 protein_coding GADD45GIP1 2 OTTHUMG00000180724.3 +33125 chr19 HAVANA gene 12965159 12974762 1997.0 + 0 ENSG00000179284.5 protein_coding DAND5 1 OTTHUMG00000180725.2 +33126 chr19 HAVANA gene 13013662 13014511 523.0 - 0 ENSG00000267417.1 antisense AC138474.1 2 OTTHUMG00000180727.1 +33127 chr19 HAVANA gene 13069792 13071374 1583.0 - 0 ENSG00000267610.2 antisense AC007787.1 2 OTTHUMG00000180728.2 +33128 chr19 HAVANA gene 13081966 13082564 599.0 + 0 ENSG00000279044.1 TEC AC007787.2 2 OTTHUMG00000180729.1 overlapping_locus +33129 chr19 HAVANA gene 12995608 13098796 6302.0 + 0 ENSG00000008441.16 protein_coding NFIX 1 OTTHUMG00000180726.4 overlapping_locus +33130 chr19 HAVANA gene 13099033 13103161 3119.0 - 0 ENSG00000104903.4 protein_coding LYL1 1 OTTHUMG00000180736.2 +33131 chr19 HAVANA gene 13104902 13117567 3364.0 - 0 ENSG00000104907.12 protein_coding TRMT1 2 OTTHUMG00000180730.3 +33132 chr19 HAVANA gene 13131571 13132410 391.0 + 0 ENSG00000266897.1 lincRNA AC005546.1 2 OTTHUMG00000180749.1 overlapping_locus +33133 chr19 HAVANA gene 13118103 13141141 4474.0 + 0 ENSG00000160877.5 protein_coding NACC1 2 OTTHUMG00000180748.3 overlapping_locus +33134 chr19 HAVANA gene 13139617 13141147 458.0 - 0 ENSG00000267512.1 antisense AC011446.1 2 OTTHUMG00000180750.1 +33135 chr19 HAVANA gene 13144058 13150383 1796.0 - 0 ENSG00000104915.14 protein_coding STX10 2 OTTHUMG00000180759.2 +33136 chr19 HAVANA gene 13153071 13154193 946.0 - 0 ENSG00000267598.1 antisense AC011446.2 2 OTTHUMG00000180791.1 +33137 chr19 HAVANA gene 13150415 13154908 3072.0 + 0 ENSG00000160888.6 protein_coding IER2 2 OTTHUMG00000180790.1 +33138 chr19 HAVANA gene 13157959 13158788 499.0 - 0 ENSG00000213253.5 processed_pseudogene RPL12P42 1 OTTHUMG00000158033.1 pseudo_consens +33139 chr19 HAVANA gene 13206442 13633025 43159.0 - 0 ENSG00000141837.19 protein_coding CACNA1A 1 OTTHUMG00000044590.16 +33140 chr19 HAVANA gene 13731760 13763296 3307.0 + 0 ENSG00000104957.13 protein_coding CCDC130 2 OTTHUMG00000180837.6 +33141 chr19 HAVANA gene 13772118 13774118 1081.0 - 0 ENSG00000267633.1 antisense AC008686.1 2 OTTHUMG00000180913.1 +33142 chr19 HAVANA gene 13764532 13774282 3456.0 + 0 ENSG00000037757.13 protein_coding MRI1 1 OTTHUMG00000180867.3 overlapping_locus +33143 chr19 HAVANA gene 13774168 13778462 1174.0 + 0 ENSG00000104979.8 protein_coding C19orf53 1 OTTHUMG00000180914.1 overlapping_locus +33144 chr19 HAVANA gene 13796574 13796933 360.0 - 0 ENSG00000267582.1 antisense AC020916.2 2 OTTHUMG00000181753.1 +33145 chr19 ENSEMBL gene 13815062 13815319 258.0 - 0 ENSG00000266770.2 misc_RNA RN7SL619P 3 +33146 chr19 HAVANA gene 13795460 13832230 4713.0 + 0 ENSG00000132003.9 protein_coding ZSWIM4 2 OTTHUMG00000181752.2 +33147 chr19 ENSEMBL gene 13836287 13836359 73.0 - 0 ENSG00000284387.1 miRNA MIR24-2 3 +33148 chr19 ENSEMBL gene 13836440 13836517 78.0 - 0 ENSG00000207808.1 miRNA MIR27A 3 +33149 chr19 ENSEMBL gene 13836587 13836659 73.0 - 0 ENSG00000207980.1 miRNA MIR23A 3 +33150 chr19 HAVANA gene 13823880 13842928 19049.0 - 0 ENSG00000267519.6 antisense AC020916.1 2 OTTHUMG00000181848.2 ncRNA_host +33151 chr19 ENSEMBL gene 13874699 13874808 110.0 + 0 ENSG00000207613.1 miRNA MIR181C 3 +33152 chr19 ENSEMBL gene 13874875 13875011 137.0 + 0 ENSG00000207585.1 miRNA MIR181D 3 +33153 chr19 HAVANA gene 13862063 13880757 988.0 + 0 ENSG00000187556.7 protein_coding NANOS3 1 OTTHUMG00000181850.2 ncRNA_host +33154 chr19 HAVANA gene 13882348 13906452 3840.0 - 0 ENSG00000132016.11 protein_coding C19orf57 1 OTTHUMG00000181851.2 +33155 chr19 HAVANA gene 13906201 13930879 5039.0 + 0 ENSG00000132024.17 protein_coding CC2D1A 2 OTTHUMG00000181852.1 +33156 chr19 HAVANA gene 13931187 13953392 4168.0 - 0 ENSG00000132000.12 protein_coding PODNL1 1 OTTHUMG00000181853.4 +33157 chr19 HAVANA gene 13952492 13961449 2961.0 + 0 ENSG00000132017.10 protein_coding DCAF15 2 OTTHUMG00000181882.3 +33158 chr19 HAVANA gene 14006422 14006773 352.0 + 0 ENSG00000275091.1 antisense AC022098.4 2 OTTHUMG00000186616.1 +33159 chr19 HAVANA gene 13961538 14007039 5465.0 - 0 ENSG00000132005.8 protein_coding RFX1 1 OTTHUMG00000181979.3 +33160 chr19 HAVANA gene 14028148 14031042 692.0 + 0 ENSG00000171136.6 protein_coding RLN3 1 OTTHUMG00000181986.1 +33161 chr19 HAVANA gene 14030855 14031557 518.0 - 0 ENSG00000267670.1 antisense AC022098.2 2 OTTHUMG00000181987.1 +33162 chr19 HAVANA gene 14031748 14053216 2962.0 + 0 ENSG00000104998.3 protein_coding IL27RA 2 OTTHUMG00000181990.2 +33163 chr19 HAVANA gene 14053365 14059159 2533.0 - 0 ENSG00000187867.8 protein_coding PALM3 2 OTTHUMG00000181991.2 +33164 chr19 HAVANA gene 14070342 14071237 896.0 + 0 ENSG00000228887.3 processed_pseudogene EEF1DP1 1 OTTHUMG00000181993.1 pseudo_consens +33165 chr19 ENSEMBL gene 14073361 14073479 119.0 + 0 ENSG00000284081.1 miRNA MIR1199 3 +33166 chr19 HAVANA gene 14072536 14075062 2354.0 + 0 ENSG00000141854.9 protein_coding MISP3 2 OTTHUMG00000181994.2 ncRNA_host +33167 chr19 HAVANA gene 14081619 14085875 1540.0 - 0 ENSG00000188032.9 protein_coding C19orf67 1 OTTHUMG00000169303.3 +33168 chr19 HAVANA gene 14087840 14091036 2263.0 - 0 ENSG00000141858.11 protein_coding SAMD1 2 OTTHUMG00000166628.4 +33169 chr19 HAVANA gene 14091688 14118084 6144.0 - 0 ENSG00000072062.13 protein_coding PRKACA 1 OTTHUMG00000182051.3 +33170 chr19 HAVANA gene 14119106 14119537 315.0 + 0 ENSG00000267783.1 antisense AC022098.3 2 OTTHUMG00000182137.1 +33171 chr19 HAVANA gene 14119509 14136956 2304.0 - 0 ENSG00000105011.8 protein_coding ASF1B 2 OTTHUMG00000150401.2 +33172 chr19 HAVANA gene 14137179 14171267 3186.0 + 0 ENSG00000267169.1 antisense AC022098.1 2 OTTHUMG00000182142.1 +33173 chr19 HAVANA gene 14147743 14206187 8487.0 - 0 ENSG00000072071.16 protein_coding ADGRL1 1 OTTHUMG00000182138.4 +33174 chr19 ENSEMBL gene 14213052 14213323 272.0 + 0 ENSG00000240803.3 misc_RNA RN7SL231P 3 +33175 chr19 HAVANA gene 14267807 14269377 164.0 - 0 ENSG00000267406.1 lincRNA AC011509.1 2 OTTHUMG00000182163.1 overlapping_locus +33176 chr19 HAVANA gene 14254189 14293205 627.0 - 0 ENSG00000267723.1 lincRNA AC011509.2 2 OTTHUMG00000182162.1 overlapping_locus +33177 chr19 HAVANA gene 14333743 14343916 768.0 + 0 ENSG00000267147.2 lincRNA LINC01842 2 OTTHUMG00000182165.2 +33178 chr19 HAVANA gene 14305458 14370196 1016.0 - 0 ENSG00000266913.1 lincRNA LINC01841 2 OTTHUMG00000182164.1 +33179 chr19 HAVANA gene 14402717 14408723 252.0 - 0 ENSG00000267379.1 antisense AC008569.1 2 OTTHUMG00000182182.1 +33180 chr19 HAVANA gene 14380501 14408725 5382.0 + 0 ENSG00000123146.19 protein_coding ADGRE5 1 OTTHUMG00000182166.4 +33181 chr19 HAVANA gene 14408819 14419383 3840.0 - 0 ENSG00000123136.14 protein_coding DDX39A 1 OTTHUMG00000182181.4 +33182 chr19 HAVANA gene 14458401 14459366 889.0 + 0 ENSG00000267474.1 sense_intronic AC008569.2 2 OTTHUMG00000182209.1 overlapping_locus +33183 chr19 HAVANA gene 14433053 14471867 4606.0 + 0 ENSG00000123143.12 protein_coding PKN1 1 OTTHUMG00000039611.3 overlapping_locus +33184 chr19 HAVANA gene 14472466 14475362 1421.0 - 0 ENSG00000160951.3 protein_coding PTGER1 2 OTTHUMG00000039610.1 +33185 chr19 HAVANA gene 14489388 14489609 222.0 + 0 ENSG00000224543.4 processed_pseudogene SNRPGP15 1 OTTHUMG00000183288.1 pseudo_consens +33186 chr19 HAVANA gene 14477760 14496149 4440.0 - 0 ENSG00000123159.15 protein_coding GIPC1 2 OTTHUMG00000182248.5 +33187 chr19 ENSEMBL gene 14529543 14529640 98.0 + 0 ENSG00000283822.1 miRNA MIR639 3 +33188 chr19 HAVANA gene 14514770 14529770 3672.0 - 0 ENSG00000132002.7 protein_coding DNAJB1 1 OTTHUMG00000183289.3 +33189 chr19 HAVANA gene 14517085 14565980 5749.0 + 0 ENSG00000099797.14 protein_coding TECR 2 OTTHUMG00000183290.3 ncRNA_host +33190 chr19 HAVANA gene 14566078 14572062 531.0 - 0 ENSG00000099795.6 protein_coding NDUFB7 2 OTTHUMG00000183291.1 +33191 chr19 ENSEMBL gene 14584095 14584395 301.0 + 0 ENSG00000243488.3 misc_RNA RN7SL337P 3 +33192 chr19 ENSEMBL gene 14588357 14588656 300.0 + 0 ENSG00000243066.3 misc_RNA RN7SL842P 3 +33193 chr19 HAVANA gene 14583084 14611157 2238.0 + 0 ENSG00000187912.11 protein_coding CLEC17A 2 OTTHUMG00000169312.1 ncRNA_host +33194 chr19 HAVANA gene 14621634 14622242 609.0 - 0 ENSG00000269378.1 processed_pseudogene AC022149.1 1 OTTHUMG00000183370.1 pseudo_consens,overlapping_locus +33195 chr19 HAVANA gene 14628599 14628801 203.0 + 0 ENSG00000275432.1 processed_pseudogene AC022149.2 2 OTTHUMG00000187968.1 +33196 chr19 HAVANA gene 14619117 14690027 2837.0 - 0 ENSG00000131355.14 protein_coding ADGRE3 1 OTTHUMG00000183406.1 overlapping_locus +33197 chr19 HAVANA gene 14689801 14733746 11611.0 + 0 ENSG00000160961.11 protein_coding ZNF333 1 OTTHUMG00000183407.1 +33198 chr19 HAVANA gene 14732393 14778541 8622.0 - 0 ENSG00000127507.17 protein_coding ADGRE2 1 OTTHUMG00000183408.3 +33199 chr19 HAVANA gene 14792318 14792533 216.0 + 0 ENSG00000256210.3 processed_pseudogene AC005255.1 2 OTTHUMG00000183409.1 +33200 chr19 HAVANA gene 14824251 14835285 4261.0 - 0 ENSG00000188269.9 protein_coding OR7A5 2 OTTHUMG00000183410.3 overlapping_locus +33201 chr19 HAVANA gene 14789260 14835376 11931.0 - 0 ENSG00000127530.3 protein_coding OR7C1 2 OTTHUMG00000183411.2 overlapping_locus +33202 chr19 HAVANA gene 14840466 14848922 1847.0 - 0 ENSG00000127515.2 protein_coding OR7A10 2 OTTHUMG00000183412.3 +33203 chr19 HAVANA gene 14852032 14852944 913.0 - 0 ENSG00000269552.1 unprocessed_pseudogene OR7A8P 2 OTTHUMG00000183413.1 +33204 chr19 HAVANA gene 14863714 14867358 1219.0 - 0 ENSG00000172148.3 transcribed_unprocessed_pseudogene OR7A2P 1 OTTHUMG00000183414.2 pseudo_consens +33205 chr19 HAVANA gene 14878203 14886132 3757.0 - 0 ENSG00000185385.4 protein_coding OR7A17 2 OTTHUMG00000183415.3 +33206 chr19 HAVANA gene 14886839 14887115 277.0 - 0 ENSG00000269678.1 unprocessed_pseudogene OR7A18P 2 OTTHUMG00000183346.1 +33207 chr19 HAVANA gene 14891737 14897845 1158.0 - 0 ENSG00000268834.2 transcribed_unprocessed_pseudogene OR7A1P 1 OTTHUMG00000183347.2 pseudo_consens +33208 chr19 HAVANA gene 14903232 14904138 907.0 - 0 ENSG00000269787.2 unprocessed_pseudogene OR7A3P 2 OTTHUMG00000183348.1 +33209 chr19 HAVANA gene 14916428 14917380 953.0 + 0 ENSG00000198367.3 unprocessed_pseudogene OR7A11P 2 OTTHUMG00000154276.2 +33210 chr19 HAVANA gene 14927052 14928060 1009.0 + 0 ENSG00000176923.5 unprocessed_pseudogene OR7A15P 2 OTTHUMG00000183349.2 +33211 chr19 HAVANA gene 14941489 14942448 960.0 + 0 ENSG00000127529.7 protein_coding OR7C2 2 OTTHUMG00000183350.2 +33212 chr19 HAVANA gene 14950034 15022990 7646.0 - 0 ENSG00000105143.12 protein_coding SLC1A6 1 OTTHUMG00000183351.2 +33213 chr19 HAVANA gene 15010744 15023269 1732.0 + 0 ENSG00000160994.3 protein_coding CCDC105 2 OTTHUMG00000183352.1 +33214 chr19 HAVANA gene 15049384 15058293 3497.0 + 0 ENSG00000105141.5 protein_coding CASP14 2 OTTHUMG00000183205.1 +33215 chr19 HAVANA gene 15082211 15092970 6057.0 + 0 ENSG00000094661.3 protein_coding OR1I1 2 OTTHUMG00000183206.2 +33216 chr19 HAVANA gene 15107403 15114988 3965.0 + 0 ENSG00000105137.12 protein_coding SYDE1 2 OTTHUMG00000183207.3 +33217 chr19 HAVANA gene 15114984 15125785 5615.0 - 0 ENSG00000105135.15 protein_coding ILVBL 2 OTTHUMG00000165630.3 +33218 chr19 HAVANA gene 15124160 15126174 356.0 + 0 ENSG00000268564.1 antisense AC003956.1 2 OTTHUMG00000183208.1 +33219 chr19 HAVANA gene 15141105 15142062 958.0 - 0 ENSG00000267961.2 unprocessed_pseudogene OR10B1P 1 OTTHUMG00000183216.2 pseudo_consens +33220 chr19 ENSEMBL gene 15145215 15145318 104.0 + 0 ENSG00000252661.1 snRNA RNU6-782P 3 +33221 chr19 ENSEMBL gene 15179283 15179350 68.0 - 0 ENSG00000275711.1 miRNA MIR6795 3 +33222 chr19 HAVANA gene 15159038 15200981 9394.0 - 0 ENSG00000074181.8 protein_coding NOTCH3 2 OTTHUMG00000183217.3 ncRNA_host +33223 chr19 HAVANA gene 15221015 15222297 277.0 - 0 ENSG00000269635.1 lincRNA AC004257.1 2 OTTHUMG00000183250.1 +33224 chr19 HAVANA gene 15226919 15233435 2034.0 - 0 ENSG00000105131.7 protein_coding EPHX3 2 OTTHUMG00000183251.3 +33225 chr19 HAVANA gene 15235519 15332545 12093.0 - 0 ENSG00000141867.17 protein_coding BRD4 2 OTTHUMG00000183252.8 +33226 chr19 HAVANA gene 15338948 15339237 290.0 + 0 ENSG00000270802.2 processed_pseudogene AC005776.1 1 OTTHUMG00000184910.2 pseudo_consens +33227 chr19 HAVANA gene 15346068 15348417 1769.0 - 0 ENSG00000273218.1 lincRNA AC005776.2 2 OTTHUMG00000186035.1 +33228 chr19 HAVANA gene 15353385 15379798 4296.0 - 0 ENSG00000105127.8 protein_coding AKAP8 2 OTTHUMG00000182444.4 +33229 chr19 HAVANA gene 15379076 15381194 1911.0 + 0 ENSG00000268189.2 processed_transcript AC005785.1 2 OTTHUMG00000182445.2 +33230 chr19 HAVANA gene 15383202 15383832 631.0 - 0 ENSG00000279203.1 TEC AC005785.2 2 OTTHUMG00000182447.4 overlapping_locus +33231 chr19 HAVANA gene 15398696 15400356 1661.0 + 0 ENSG00000279716.1 TEC AC006128.1 2 OTTHUMG00000182477.2 +33232 chr19 HAVANA gene 15380048 15419141 5081.0 - 0 ENSG00000011243.17 protein_coding AKAP8L 1 OTTHUMG00000182446.8 overlapping_locus +33233 chr19 ENSEMBL gene 15449548 15449608 61.0 + 0 ENSG00000269782.1 miRNA MIR1470 3 +33234 chr19 HAVANA gene 15419980 15449951 7965.0 - 0 ENSG00000011451.19 protein_coding WIZ 1 OTTHUMG00000182448.10 +33235 chr19 HAVANA gene 15451624 15464571 4681.0 - 0 ENSG00000105122.12 protein_coding RASAL3 2 OTTHUMG00000182450.4 +33236 chr19 HAVANA gene 15468645 15498956 3188.0 - 0 ENSG00000161031.12 protein_coding PGLYRP2 2 OTTHUMG00000150690.5 +33237 chr19 HAVANA gene 15515342 15516836 315.0 - 0 ENSG00000269765.2 unprocessed_pseudogene AC011492.1 1 OTTHUMG00000182452.2 pseudo_consens +33238 chr19 HAVANA gene 15508493 15552317 2644.0 + 0 ENSG00000171954.12 protein_coding CYP4F22 2 OTTHUMG00000182451.2 +33239 chr19 HAVANA gene 15564074 15584709 1579.0 + 0 ENSG00000269516.6 transcribed_unprocessed_pseudogene CYP4F23P 2 OTTHUMG00000182453.4 +33240 chr19 HAVANA gene 15611623 15611909 287.0 - 0 ENSG00000267135.2 processed_pseudogene AD000091.1 2 OTTHUMG00000182384.5 +33241 chr19 HAVANA gene 15611657 15612122 466.0 + 0 ENSG00000225067.4 processed_pseudogene RPL23AP2 1 OTTHUMG00000158039.3 pseudo_consens +33242 chr19 HAVANA gene 15613247 15614553 602.0 - 0 ENSG00000266951.2 lincRNA AC093072.1 2 OTTHUMG00000182385.2 +33243 chr19 HAVANA gene 15615218 15630638 7048.0 + 0 ENSG00000186526.12 protein_coding CYP4F8 2 OTTHUMG00000182386.6 +33244 chr19 HAVANA gene 15640897 15662825 5517.0 + 0 ENSG00000186529.15 protein_coding CYP4F3 2 OTTHUMG00000182374.5 +33245 chr19 HAVANA gene 15664106 15669826 752.0 + 0 ENSG00000267241.2 unprocessed_pseudogene CYP4F10P 2 OTTHUMG00000182388.2 +33246 chr19 HAVANA gene 15672757 15697174 5351.0 + 0 ENSG00000186204.14 protein_coding CYP4F12 2 OTTHUMG00000164477.13 +33247 chr19 HAVANA gene 15728020 15729060 1041.0 + 0 ENSG00000171942.4 protein_coding OR10H2 2 OTTHUMG00000182389.1 +33248 chr19 HAVANA gene 15737985 15742343 1029.0 + 0 ENSG00000171936.2 protein_coding OR10H3 2 OTTHUMG00000182390.3 +33249 chr19 HAVANA gene 15760375 15770828 561.0 + 0 ENSG00000268673.3 lincRNA AC004597.1 2 OTTHUMG00000186011.1 +33250 chr19 HAVANA gene 15760241 15779909 1580.0 - 0 ENSG00000267594.5 unprocessed_pseudogene CYP4F24P 2 OTTHUMG00000182391.4 +33251 chr19 HAVANA gene 15787661 15801025 7131.0 + 0 ENSG00000172519.9 protein_coding OR10H5 2 OTTHUMG00000182284.2 +33252 chr19 HAVANA gene 15804549 15815664 4454.0 - 0 ENSG00000186723.4 protein_coding OR10H1 2 OTTHUMG00000182285.2 +33253 chr19 HAVANA gene 15821796 15823797 639.0 - 0 ENSG00000267235.2 unprocessed_pseudogene ZNF861P 2 OTTHUMG00000182286.3 +33254 chr19 ENSEMBL gene 15834730 15834804 75.0 + 0 ENSG00000273782.1 misc_RNA RF02202 3 +33255 chr19 HAVANA gene 15827045 15835853 669.0 - 0 ENSG00000267308.1 lincRNA LINC01764 2 OTTHUMG00000160750.29 +33256 chr19 HAVANA gene 15828206 15836326 4152.0 + 0 ENSG00000214049.7 lincRNA UCA1 2 OTTHUMG00000182287.28 ncRNA_host +33257 chr19 HAVANA gene 15851993 15864904 774.0 - 0 ENSG00000267453.7 transcribed_unprocessed_pseudogene LINC01835 2 OTTHUMG00000182288.3 +33258 chr19 HAVANA gene 15871667 15871852 186.0 - 0 ENSG00000273330.1 unprocessed_pseudogene CYP4F36P 2 OTTHUMG00000182289.5 +33259 chr19 HAVANA gene 15878023 15898120 3142.0 - 0 ENSG00000186115.12 protein_coding CYP4F2 2 OTTHUMG00000185995.4 +33260 chr19 HAVANA gene 15902300 15903238 939.0 - 0 ENSG00000267218.2 processed_pseudogene AC005336.2 1 OTTHUMG00000182291.2 pseudo_consens +33261 chr19 HAVANA gene 15904556 15907234 2679.0 + 0 ENSG00000279717.1 TEC AC005336.3 2 OTTHUMG00000186034.1 +33262 chr19 HAVANA gene 15910582 15911824 1243.0 - 0 ENSG00000267056.2 processed_pseudogene AC005336.1 1 OTTHUMG00000182293.2 pseudo_consens +33263 chr19 HAVANA gene 15912367 15934867 4027.0 - 0 ENSG00000171903.16 protein_coding CYP4F11 2 OTTHUMG00000182294.5 +33264 chr19 HAVANA gene 15944299 15950350 1537.0 + 0 ENSG00000176231.2 protein_coding OR10H4 2 OTTHUMG00000182268.4 +33265 chr19 HAVANA gene 15979835 15999020 1339.0 - 0 ENSG00000267392.3 unprocessed_pseudogene CYP4F9P 1 OTTHUMG00000182269.4 pseudo_consens +33266 chr19 HAVANA gene 16019719 16020290 572.0 + 0 ENSG00000280412.1 TEC AC004790.2 2 OTTHUMG00000182270.4 overlapping_locus +33267 chr19 HAVANA gene 16015287 16027462 4140.0 + 0 ENSG00000205396.11 processed_transcript LINC00661 2 OTTHUMG00000169715.6 overlapping_locus +33268 chr19 HAVANA gene 16034776 16036537 1762.0 - 0 ENSG00000267609.2 processed_pseudogene SNX33P1 1 OTTHUMG00000182271.2 pseudo_consens +33269 chr19 HAVANA gene 16037009 16038455 536.0 - 0 ENSG00000277766.1 unprocessed_pseudogene AC004790.1 2 OTTHUMG00000187969.1 +33270 chr19 HAVANA gene 16031307 16042116 2692.0 + 0 ENSG00000167459.16 processed_transcript LINC00905 2 OTTHUMG00000186020.1 +33271 chr19 HAVANA gene 16051929 16052689 761.0 + 0 ENSG00000267450.1 unprocessed_pseudogene OR1AB1P 2 OTTHUMG00000182236.1 +33272 chr19 HAVANA gene 16065737 16066312 396.0 + 0 ENSG00000267517.1 lincRNA LINC01855 2 OTTHUMG00000182228.1 +33273 chr19 HAVANA gene 16074293 16077395 3103.0 - 0 ENSG00000279198.1 TEC AC008894.3 2 OTTHUMG00000182135.1 +33274 chr19 HAVANA gene 16067021 16103005 7414.0 + 0 ENSG00000167460.15 protein_coding TPM4 1 OTTHUMG00000182134.7 +33275 chr19 HAVANA gene 16103761 16104254 367.0 - 0 ENSG00000267373.1 lincRNA AC008894.1 2 OTTHUMG00000182237.1 +33276 chr19 HAVANA gene 16111629 16134234 5191.0 + 0 ENSG00000167461.11 protein_coding RAB8A 2 OTTHUMG00000182238.1 overlapping_locus +33277 chr19 HAVANA gene 16123661 16139892 3927.0 - 0 ENSG00000269243.1 antisense AC008894.2 2 OTTHUMG00000182239.1 +33278 chr19 HAVANA gene 16134028 16158575 3398.0 + 0 ENSG00000196684.12 protein_coding HSH2D 2 OTTHUMG00000182256.5 overlapping_locus +33279 chr19 HAVANA gene 16161368 16173525 711.0 - 0 ENSG00000141977.9 protein_coding CIB3 1 OTTHUMG00000182281.1 +33280 chr19 ENSEMBL gene 16187313 16187566 254.0 + 0 ENSG00000275901.1 misc_RNA RF00017 3 +33281 chr19 HAVANA gene 16186276 16189458 578.0 - 0 ENSG00000267033.1 antisense AC020911.1 2 OTTHUMG00000182280.1 +33282 chr19 HAVANA gene 16185380 16192046 1921.0 + 0 ENSG00000105058.11 protein_coding FAM32A 1 OTTHUMG00000182279.1 ncRNA_host +33283 chr19 HAVANA gene 16197578 16245907 14371.0 + 0 ENSG00000072958.8 protein_coding AP1M1 1 OTTHUMG00000182323.4 +33284 chr19 HAVANA gene 16283359 16324514 803.0 - 0 ENSG00000267275.1 antisense AC020911.2 2 OTTHUMG00000182295.4 +33285 chr19 HAVANA gene 16324817 16327874 2018.0 + 0 ENSG00000127528.5 protein_coding KLF2 2 OTTHUMG00000182330.1 +33286 chr19 HAVANA gene 16352462 16353182 721.0 - 0 ENSG00000277825.1 lincRNA AC020917.3 2 OTTHUMG00000186959.1 +33287 chr19 HAVANA gene 16356329 16358327 1999.0 - 0 ENSG00000280332.1 TEC AC020917.4 2 OTTHUMG00000182408.1 overlapping_locus +33288 chr19 HAVANA gene 16412684 16413576 893.0 + 0 ENSG00000240418.1 processed_pseudogene AC020917.1 1 OTTHUMG00000158040.1 pseudo_consens +33289 chr19 HAVANA gene 16440946 16443584 401.0 + 0 ENSG00000267703.1 antisense AC020917.2 2 OTTHUMG00000182332.1 +33290 chr19 HAVANA gene 16355239 16472085 8431.0 - 0 ENSG00000127527.13 protein_coding EPS15L1 1 OTTHUMG00000182361.2 overlapping_locus +33291 chr19 HAVANA gene 16479057 16496192 1460.0 - 0 ENSG00000269058.5 protein_coding CALR3 1 OTTHUMG00000152571.4 overlapping_locus +33292 chr19 HAVANA gene 16496311 16521352 4421.0 + 0 ENSG00000105072.8 protein_coding C19orf44 1 OTTHUMG00000182439.2 +33293 chr19 ENSEMBL gene 16539688 16539984 297.0 - 0 ENSG00000240106.2 misc_RNA RN7SL146P 3 +33294 chr19 HAVANA gene 16517889 16542530 6113.0 - 0 ENSG00000085872.14 protein_coding CHERP 1 OTTHUMG00000169304.2 ncRNA_host,overlapping_locus +33295 chr19 HAVANA gene 16542746 16544814 2069.0 + 0 ENSG00000269399.2 lincRNA AC008764.6 2 OTTHUMG00000186624.1 +33296 chr19 HAVANA gene 16551773 16552328 432.0 + 0 ENSG00000268309.1 antisense AC008764.3 2 OTTHUMG00000182649.1 +33297 chr19 HAVANA gene 16565551 16566330 190.0 + 0 ENSG00000269085.1 antisense AC008764.5 2 OTTHUMG00000182560.1 +33298 chr19 HAVANA gene 16549831 16572382 7257.0 - 0 ENSG00000127526.14 protein_coding SLC35E1 1 OTTHUMG00000152575.5 overlapping_locus +33299 chr19 HAVANA gene 16572624 16575340 2717.0 + 0 ENSG00000279529.1 antisense AC008764.8 2 OTTHUMG00000182561.2 +33300 chr19 HAVANA gene 16586905 16587985 1081.0 - 0 ENSG00000269578.1 sense_intronic AC008764.7 2 OTTHUMG00000182434.1 overlapping_locus +33301 chr19 HAVANA gene 16586905 16589409 2505.0 + 0 ENSG00000279748.1 TEC AC008764.9 2 OTTHUMG00000182562.1 +33302 chr19 HAVANA gene 16610374 16612203 1830.0 - 0 ENSG00000279977.1 TEC AC008764.10 2 OTTHUMG00000182435.1 overlapping_locus +33303 chr19 HAVANA gene 16479067 16628204 2567.0 - 0 ENSG00000141979.4 protein_coding AC008764.1 1 OTTHUMG00000182419.1 ncRNA_host,overlapping_locus +33304 chr19 HAVANA gene 16574907 16629062 5330.0 - 0 ENSG00000105085.10 protein_coding MED26 2 OTTHUMG00000182433.4 overlapping_locus +33305 chr19 HAVANA gene 16633797 16635269 1473.0 - 0 ENSG00000269044.2 sense_intronic AC024075.2 2 OTTHUMG00000182633.2 overlapping_locus +33306 chr19 HAVANA gene 16610411 16636531 376.0 + 0 ENSG00000268087.1 lincRNA AC008764.2 2 OTTHUMG00000182563.2 overlapping_locus +33307 chr19 HAVANA gene 16639967 16640668 546.0 - 0 ENSG00000267904.1 sense_intronic AC024075.1 2 OTTHUMG00000182634.1 overlapping_locus +33308 chr19 HAVANA gene 16630743 16643942 533.0 + 0 ENSG00000269427.1 antisense AC024075.3 2 OTTHUMG00000182564.2 overlapping_locus +33309 chr19 HAVANA gene 16577642 16660115 1184.0 - 0 ENSG00000268790.5 protein_coding AC008764.4 2 OTTHUMG00000182632.1 overlapping_locus +33310 chr19 HAVANA gene 16630751 16660442 6020.0 - 0 ENSG00000214046.8 protein_coding SMIM7 2 OTTHUMG00000149895.3 overlapping_locus +33311 chr19 HAVANA gene 16661127 16690029 3005.0 + 0 ENSG00000072954.6 protein_coding TMEM38A 2 OTTHUMG00000182639.1 +33312 chr19 HAVANA gene 16712317 16712434 118.0 + 0 ENSG00000269419.1 processed_pseudogene AC008737.2 2 OTTHUMG00000182640.1 +33313 chr19 HAVANA gene 16801426 16801714 221.0 + 0 ENSG00000269799.1 sense_intronic AC008737.3 2 OTTHUMG00000182641.1 overlapping_locus +33314 chr19 HAVANA gene 16719976 16817963 8495.0 + 0 ENSG00000188039.14 protein_coding NWD1 2 OTTHUMG00000164507.5 overlapping_locus +33315 chr19 HAVANA gene 16844025 16846473 371.0 + 0 ENSG00000268743.1 sense_intronic AC008737.1 2 OTTHUMG00000182643.1 overlapping_locus +33316 chr19 HAVANA gene 16829400 16880353 8777.0 + 0 ENSG00000127511.9 protein_coding SIN3B 1 OTTHUMG00000182642.2 overlapping_locus +33317 chr19 HAVANA gene 16888860 16892606 3473.0 + 0 ENSG00000127533.3 protein_coding F2RL3 1 OTTHUMG00000182647.1 +33318 chr19 ENSEMBL gene 16907462 16907723 262.0 + 0 ENSG00000264250.2 misc_RNA RN7SL835P 3 +33319 chr19 ENSEMBL gene 16910490 16910784 295.0 - 0 ENSG00000263595.2 misc_RNA RN7SL823P 3 +33320 chr19 HAVANA gene 17009189 17013460 405.0 + 0 ENSG00000268985.1 antisense AC020908.2 2 OTTHUMG00000182648.1 +33321 chr19 HAVANA gene 16892947 17026815 10199.0 - 0 ENSG00000160111.12 protein_coding CPAMD8 2 OTTHUMG00000133549.4 ncRNA_host +33322 chr19 HAVANA gene 17051994 17055087 280.0 + 0 ENSG00000268289.1 antisense AC020908.1 2 OTTHUMG00000182673.1 +33323 chr19 HAVANA gene 17049729 17075625 5533.0 - 0 ENSG00000131351.14 protein_coding HAUS8 2 OTTHUMG00000182672.1 +33324 chr19 HAVANA gene 17095418 17099307 610.0 - 0 ENSG00000269066.1 antisense AC020908.3 2 OTTHUMG00000182709.1 +33325 chr19 HAVANA gene 17152588 17168051 495.0 - 0 ENSG00000268056.5 antisense AC020913.1 2 OTTHUMG00000182710.1 +33326 chr19 HAVANA gene 17177511 17178476 125.0 - 0 ENSG00000269836.1 antisense AC020913.3 2 OTTHUMG00000182711.1 +33327 chr19 HAVANA gene 17207138 17208010 629.0 - 0 ENSG00000269480.1 antisense AC020913.2 2 OTTHUMG00000182712.1 +33328 chr19 HAVANA gene 17075781 17214537 9948.0 + 0 ENSG00000099331.13 protein_coding MYO9B 2 OTTHUMG00000182707.2 +33329 chr19 HAVANA gene 17215346 17219829 2431.0 + 0 ENSG00000053501.12 protein_coding USE1 2 OTTHUMG00000182723.2 +33330 chr19 HAVANA gene 17226204 17229219 1867.0 + 0 ENSG00000099330.8 protein_coding OCEL1 2 OTTHUMG00000182726.1 +33331 chr19 HAVANA gene 17231883 17245940 2676.0 - 0 ENSG00000160113.5 protein_coding NR2F6 2 OTTHUMG00000182728.2 overlapping_locus +33332 chr19 HAVANA gene 17235940 17255448 515.0 - 0 ENSG00000269095.1 protein_coding AC010646.1 2 OTTHUMG00000182729.2 overlapping_locus +33333 chr19 HAVANA gene 17267350 17281249 2607.0 + 0 ENSG00000105393.15 protein_coding BABAM1 1 OTTHUMG00000182755.2 overlapping_locus +33334 chr19 HAVANA gene 17249176 17282786 5175.0 - 0 ENSG00000130307.11 protein_coding USHBP1 2 OTTHUMG00000182730.2 overlapping_locus +33335 chr19 HAVANA gene 17267418 17282966 1207.0 + 0 ENSG00000269307.1 protein_coding AC010463.1 2 OTTHUMG00000182756.2 overlapping_locus +33336 chr19 HAVANA gene 17281645 17287646 3569.0 + 0 ENSG00000160117.14 protein_coding ANKLE1 1 OTTHUMG00000150839.5 overlapping_locus +33337 chr19 HAVANA gene 17296196 17296695 500.0 - 0 ENSG00000269815.1 sense_intronic AC010463.3 2 OTTHUMG00000182664.1 overlapping_locus +33338 chr19 HAVANA gene 17292609 17306843 1686.0 + 0 ENSG00000130312.6 protein_coding MRPL34 2 OTTHUMG00000182764.1 +33339 chr19 HAVANA gene 17292131 17310236 2210.0 - 0 ENSG00000127220.5 protein_coding ABHD8 1 OTTHUMG00000182663.2 overlapping_locus +33340 chr19 HAVANA gene 17309518 17323301 4596.0 + 0 ENSG00000130311.10 protein_coding DDA1 2 OTTHUMG00000182765.1 +33341 chr19 HAVANA gene 17323223 17334829 4979.0 - 0 ENSG00000074855.10 protein_coding ANO8 2 OTTHUMG00000182665.1 +33342 chr19 HAVANA gene 17334920 17342735 4532.0 + 0 ENSG00000130299.16 protein_coding GTPBP3 1 OTTHUMG00000182766.2 +33343 chr19 HAVANA gene 17360932 17362753 661.0 + 0 ENSG00000269350.1 antisense AC010463.2 2 OTTHUMG00000182666.1 +33344 chr19 HAVANA gene 17351448 17377350 2305.0 - 0 ENSG00000130300.8 protein_coding PLVAP 2 OTTHUMG00000182784.2 +33345 chr19 HAVANA gene 17390509 17394158 1464.0 - 0 ENSG00000269720.2 protein_coding CCDC194 2 OTTHUMG00000191663.1 +33346 chr19 HAVANA gene 17402939 17405648 1119.0 - 0 ENSG00000130303.12 protein_coding BST2 1 OTTHUMG00000191770.1 +33347 chr19 HAVANA gene 17417031 17418288 1258.0 - 0 ENSG00000254503.1 processed_pseudogene AC010319.1 1 OTTHUMG00000166259.2 pseudo_consens,overlapping_locus +33348 chr19 HAVANA gene 17405686 17419324 3045.0 + 0 ENSG00000282851.2 lincRNA BISPR 2 OTTHUMG00000182856.3 overlapping_locus +33349 chr19 HAVANA gene 17419305 17419774 470.0 - 0 ENSG00000269053.1 antisense AC010319.3 2 OTTHUMG00000182857.1 overlapping_locus +33350 chr19 HAVANA gene 17414257 17422324 691.0 - 0 ENSG00000269481.1 antisense AC010319.4 2 OTTHUMG00000182790.2 overlapping_locus +33351 chr19 HAVANA gene 17405722 17433724 4053.0 + 0 ENSG00000141971.12 protein_coding MVB12A 1 OTTHUMG00000166252.5 overlapping_locus +33352 chr19 HAVANA gene 17435509 17448567 2317.0 - 0 ENSG00000188051.6 protein_coding TMEM221 2 OTTHUMG00000182858.1 overlapping_locus +33353 chr19 HAVANA gene 17452211 17452969 759.0 - 0 ENSG00000269736.1 lincRNA AC010319.5 2 OTTHUMG00000182860.1 overlapping_locus +33354 chr19 HAVANA gene 17436611 17460804 892.0 - 0 ENSG00000269035.1 protein_coding AC010319.2 2 OTTHUMG00000182859.2 overlapping_locus +33355 chr19 HAVANA gene 17455425 17460954 946.0 - 0 ENSG00000171773.2 protein_coding NXNL1 2 OTTHUMG00000182798.1 overlapping_locus +33356 chr19 HAVANA gene 17468769 17506168 8249.0 + 0 ENSG00000130304.16 protein_coding SLC27A1 1 OTTHUMG00000182878.1 +33357 chr19 HAVANA gene 17488990 17511889 2067.0 - 0 ENSG00000269439.5 lincRNA AC010618.3 2 OTTHUMG00000182861.2 +33358 chr19 HAVANA gene 17518330 17520565 460.0 - 0 ENSG00000269161.1 antisense AC010618.2 2 OTTHUMG00000182862.1 +33359 chr19 HAVANA gene 17511629 17521288 2847.0 + 0 ENSG00000130313.6 protein_coding PGLS 1 OTTHUMG00000182879.2 +33360 chr19 HAVANA gene 17523301 17553839 6628.0 + 0 ENSG00000167483.17 protein_coding FAM129C 1 OTTHUMG00000182892.2 +33361 chr19 HAVANA gene 17555594 17583162 4900.0 + 0 ENSG00000130309.10 protein_coding COLGALT1 1 OTTHUMG00000182893.2 +33362 chr19 HAVANA gene 17589595 17590071 477.0 - 0 ENSG00000243771.1 processed_pseudogene AC010618.1 1 OTTHUMG00000158041.1 pseudo_consens +33363 chr19 HAVANA gene 17613722 17614430 419.0 + 0 ENSG00000269752.1 antisense AC008761.2 2 OTTHUMG00000183199.1 +33364 chr19 HAVANA gene 17622447 17623338 892.0 + 0 ENSG00000279300.1 TEC AC008761.3 2 OTTHUMG00000183200.1 +33365 chr19 HAVANA gene 17601328 17688365 11188.0 - 0 ENSG00000130477.15 protein_coding UNC13A 2 OTTHUMG00000163877.4 +33366 chr19 HAVANA gene 17727840 17734513 217.0 - 0 ENSG00000268112.1 antisense AC008761.1 2 OTTHUMG00000183201.1 +33367 chr19 HAVANA gene 17719242 17734516 5040.0 + 0 ENSG00000130479.10 protein_coding MAP1S 1 OTTHUMG00000183292.2 +33368 chr19 HAVANA gene 17747718 17788568 5694.0 + 0 ENSG00000130475.14 protein_coding FCHO1 1 OTTHUMG00000183293.6 +33369 chr19 HAVANA gene 17794828 17813082 2301.0 + 0 ENSG00000179913.10 protein_coding B3GNT3 2 OTTHUMG00000183490.3 +33370 chr19 HAVANA gene 17816512 17821574 923.0 - 0 ENSG00000248099.3 protein_coding INSL3 1 OTTHUMG00000183481.1 +33371 chr19 HAVANA gene 17824780 17848071 6813.0 - 0 ENSG00000105639.18 protein_coding JAK3 2 OTTHUMG00000165648.1 +33372 chr19 ENSEMBL gene 17862588 17862720 133.0 + 0 ENSG00000207166.1 snoRNA SNORA68 3 +33373 chr19 HAVANA gene 17859876 17864153 3527.0 + 0 ENSG00000105640.12 protein_coding RPL18A 1 OTTHUMG00000183445.2 ncRNA_host +33374 chr19 HAVANA gene 17871273 17871705 433.0 - 0 ENSG00000279617.1 TEC AC005796.1 2 OTTHUMG00000183446.1 +33375 chr19 HAVANA gene 17871973 17895174 3652.0 + 0 ENSG00000105641.3 protein_coding SLC5A5 2 OTTHUMG00000183447.1 +33376 chr19 HAVANA gene 17933016 17943991 1660.0 + 0 ENSG00000007080.10 protein_coding CCDC124 2 OTTHUMG00000183405.2 +33377 chr19 ENSEMBL gene 17972025 17972117 93.0 + 0 ENSG00000252591.1 rRNA_pseudogene RNA5SP468 3 +33378 chr19 HAVANA gene 17951293 18000080 3981.0 + 0 ENSG00000105642.15 protein_coding KCNN1 2 OTTHUMG00000183482.9 +33379 chr19 HAVANA gene 18009440 18009881 442.0 - 0 ENSG00000279172.1 TEC AC020904.3 2 OTTHUMG00000183484.1 +33380 chr19 HAVANA gene 18001132 18014102 4637.0 + 0 ENSG00000105643.9 protein_coding ARRDC2 2 OTTHUMG00000183483.7 +33381 chr19 HAVANA gene 18022403 18032099 1736.0 + 0 ENSG00000273654.1 transcribed_processed_pseudogene AC020904.2 1 OTTHUMG00000183486.7 pseudo_consens +33382 chr19 HAVANA gene 18040355 18041083 729.0 + 0 ENSG00000268623.2 processed_pseudogene AC020904.1 1 OTTHUMG00000183487.2 pseudo_consens +33383 chr19 HAVANA gene 18048637 18049090 454.0 + 0 ENSG00000243455.3 processed_pseudogene RPS18P13 1 OTTHUMG00000158043.3 pseudo_consens +33384 chr19 HAVANA gene 18058995 18098944 4298.0 - 0 ENSG00000096996.15 protein_coding IL12RB1 2 OTTHUMG00000183417.8 +33385 chr19 HAVANA gene 18144522 18151691 463.0 - 0 ENSG00000269145.2 antisense AC007192.2 2 OTTHUMG00000183419.2 +33386 chr19 HAVANA gene 18097793 18151692 6772.0 + 0 ENSG00000099308.10 protein_coding MAST3 2 OTTHUMG00000183418.5 +33387 chr19 HAVANA gene 18153118 18170540 4524.0 + 0 ENSG00000105647.16 protein_coding PIK3R2 2 OTTHUMG00000183383.4 overlapping_locus +33388 chr19 HAVANA gene 18173162 18178117 2481.0 + 0 ENSG00000216490.3 protein_coding IFI30 2 OTTHUMG00000183373.5 overlapping_locus +33389 chr19 HAVANA gene 18153158 18178117 5142.0 + 0 ENSG00000268173.3 protein_coding AC007192.1 2 OTTHUMG00000150640.4 overlapping_locus +33390 chr19 HAVANA gene 18193182 18196948 2135.0 + 0 ENSG00000254858.9 protein_coding MPV17L2 2 OTTHUMG00000165628.8 +33391 chr19 HAVANA gene 18196784 18204074 1818.0 - 0 ENSG00000105649.9 protein_coding RAB3A 2 OTTHUMG00000137378.4 +33392 chr19 HAVANA gene 18204730 18220480 1212.0 + 0 ENSG00000268650.3 antisense AC005759.1 2 OTTHUMG00000183374.6 +33393 chr19 HAVANA gene 18208652 18248200 6546.0 - 0 ENSG00000105650.22 protein_coding PDE4C 2 OTTHUMG00000183353.9 overlapping_locus +33394 chr19 HAVANA gene 18249950 18255419 1131.0 - 0 ENSG00000284797.1 protein_coding AC008397.1 2 OTTHUMG00000192481.1 overlapping_locus +33395 chr19 HAVANA gene 18207961 18255419 8532.0 - 0 ENSG00000285188.1 protein_coding AC008397.2 2 OTTHUMG00000192476.1 overlapping_locus +33396 chr19 HAVANA gene 18257097 18274509 9154.0 - 0 ENSG00000130518.16 protein_coding IQCN 2 OTTHUMG00000183354.10 +33397 chr19 HAVANA gene 18279760 18281622 1863.0 - 0 ENSG00000130522.5 protein_coding JUND 2 OTTHUMG00000183355.5 +33398 chr19 ENSEMBL gene 18282077 18282161 85.0 + 0 ENSG00000267959.3 miRNA MIR3188 3 +33399 chr19 HAVANA gene 18285343 18285495 153.0 - 0 ENSG00000241464.3 processed_pseudogene RPL39P38 1 OTTHUMG00000158045.3 pseudo_consens +33400 chr19 HAVANA gene 18306230 18323274 3029.0 - 0 ENSG00000130520.10 protein_coding LSM4 2 OTTHUMG00000183357.11 +33401 chr19 ENSEMBL gene 18333276 18333573 298.0 + 0 ENSG00000239821.3 misc_RNA RN7SL513P 3 +33402 chr19 HAVANA gene 18340587 18369950 7520.0 + 0 ENSG00000130517.13 protein_coding PGPEP1 1 OTTHUMG00000183358.7 +33403 chr19 ENSEMBL gene 18386562 18386634 73.0 + 0 ENSG00000264175.1 miRNA MIR3189 3 +33404 chr19 HAVANA gene 18374731 18389176 2087.0 + 0 ENSG00000130513.6 protein_coding GDF15 2 OTTHUMG00000183360.6 ncRNA_host +33405 chr19 HAVANA gene 18391144 18397617 2415.0 - 0 ENSG00000175489.9 protein_coding LRRC25 2 OTTHUMG00000183361.4 +33406 chr19 HAVANA gene 18418864 18434562 2974.0 + 0 ENSG00000130511.15 protein_coding SSBP4 2 OTTHUMG00000183362.9 +33407 chr19 HAVANA gene 18434388 18438301 3284.0 - 0 ENSG00000105655.18 protein_coding ISYNA1 1 OTTHUMG00000179027.9 +33408 chr19 HAVANA gene 18441419 18443597 599.0 + 0 ENSG00000268199.2 antisense AC010335.1 2 OTTHUMG00000183363.2 +33409 chr19 HAVANA gene 18448275 18448802 528.0 + 0 ENSG00000279262.1 TEC AC010335.2 2 OTTHUMG00000185939.1 +33410 chr19 HAVANA gene 18448275 18448805 531.0 - 0 ENSG00000280121.1 TEC AC010335.3 2 OTTHUMG00000185913.3 overlapping_locus +33411 chr19 HAVANA gene 18442663 18522127 4929.0 - 0 ENSG00000105656.12 protein_coding ELL 2 OTTHUMG00000183364.8 overlapping_locus +33412 chr19 HAVANA gene 18531613 18532632 352.0 + 0 ENSG00000268938.2 antisense AC005387.1 2 OTTHUMG00000183367.2 +33413 chr19 HAVANA gene 18532908 18536188 440.0 + 0 ENSG00000269191.1 antisense AC005387.2 2 OTTHUMG00000183369.1 +33414 chr19 HAVANA gene 18531751 18544077 2902.0 - 0 ENSG00000105701.15 protein_coding FKBP8 1 OTTHUMG00000183368.11 +33415 chr19 HAVANA gene 18557775 18561560 2001.0 - 0 ENSG00000268030.1 antisense AC005253.1 2 OTTHUMG00000183108.1 +33416 chr19 HAVANA gene 18568506 18569375 432.0 - 0 ENSG00000268983.1 antisense AC005253.2 2 OTTHUMG00000183109.1 +33417 chr19 HAVANA gene 18557762 18569387 4112.0 + 0 ENSG00000105700.10 protein_coding KXD1 1 OTTHUMG00000183107.3 +33418 chr19 HAVANA gene 18571730 18577550 4306.0 + 0 ENSG00000221983.7 protein_coding UBA52 2 OTTHUMG00000183110.2 +33419 chr19 HAVANA gene 18588685 18592336 3370.0 + 0 ENSG00000006015.17 protein_coding REX1BD 1 OTTHUMG00000183112.1 +33420 chr19 HAVANA gene 18572220 18607741 3018.0 - 0 ENSG00000006016.10 protein_coding CRLF1 2 OTTHUMG00000183111.2 +33421 chr19 HAVANA gene 18607430 18621039 2626.0 + 0 ENSG00000105696.8 protein_coding TMEM59L 2 OTTHUMG00000183113.3 +33422 chr19 ENSEMBL gene 18631646 18631908 263.0 - 0 ENSG00000263490.2 misc_RNA RN7SL155P 3 +33423 chr19 HAVANA gene 18636965 18671714 4797.0 + 0 ENSG00000167487.11 protein_coding KLHL26 1 OTTHUMG00000183114.3 +33424 chr19 HAVANA gene 18683677 18782333 6965.0 + 0 ENSG00000105662.15 protein_coding CRTC1 1 OTTHUMG00000183115.4 +33425 chr19 HAVANA gene 18782773 18791314 3101.0 - 0 ENSG00000105664.10 protein_coding COMP 2 OTTHUMG00000169318.3 +33426 chr19 HAVANA gene 18831938 18868236 8600.0 + 0 ENSG00000005007.12 protein_coding UPF1 2 OTTHUMG00000183025.2 +33427 chr19 HAVANA gene 18881680 18883376 683.0 + 0 ENSG00000269694.1 antisense AC005197.1 2 OTTHUMG00000183051.1 +33428 chr19 HAVANA gene 18868545 18896096 2517.0 - 0 ENSG00000130283.8 protein_coding GDF1 2 OTTHUMG00000183278.2 overlapping_locus +33429 chr19 HAVANA gene 18868545 18896727 3753.0 - 0 ENSG00000223802.7 protein_coding CERS1 1 OTTHUMG00000183049.2 overlapping_locus +33430 chr19 HAVANA gene 18899514 18919397 2885.0 - 0 ENSG00000105669.13 protein_coding COPE 2 OTTHUMG00000183052.1 overlapping_locus +33431 chr19 HAVANA gene 18919675 18928633 2780.0 + 0 ENSG00000105671.11 protein_coding DDX49 2 OTTHUMG00000182994.2 +33432 chr19 HAVANA gene 18907013 18934397 685.0 - 0 ENSG00000268193.5 protein_coding AC002985.1 2 OTTHUMG00000182999.2 overlapping_locus +33433 chr19 HAVANA gene 18929201 18941261 3422.0 - 0 ENSG00000051128.18 protein_coding HOMER3 2 OTTHUMG00000182995.2 overlapping_locus +33434 chr19 HAVANA gene 18940322 18946831 957.0 + 0 ENSG00000269019.1 antisense HOMER3-AS1 2 OTTHUMG00000182996.1 +33435 chr19 ENSEMBL gene 18957957 18958258 302.0 - 0 ENSG00000241172.3 misc_RNA RN7SL70P 3 +33436 chr19 HAVANA gene 18990888 19034023 8468.0 - 0 ENSG00000064607.16 protein_coding SUGP2 2 OTTHUMG00000182997.4 +33437 chr19 HAVANA gene 19033575 19060311 4052.0 + 0 ENSG00000105676.13 protein_coding ARMC6 1 OTTHUMG00000169271.5 +33438 chr19 HAVANA gene 19063999 19112888 4519.0 + 0 ENSG00000181035.13 protein_coding SLC25A42 2 OTTHUMG00000183280.1 +33439 chr19 HAVANA gene 19119169 19138513 3281.0 - 0 ENSG00000064545.14 protein_coding TMEM161A 2 OTTHUMG00000182217.7 +33440 chr19 HAVANA gene 19145568 19170289 1848.0 - 0 ENSG00000213999.15 protein_coding MEF2B 1 OTTHUMG00000161595.4 overlapping_locus +33441 chr19 HAVANA gene 19145567 19192158 1931.0 - 0 ENSG00000064489.22 protein_coding BORCS8-MEF2B 2 OTTHUMG00000154572.8 overlapping_locus +33442 chr19 HAVANA gene 19176903 19192591 5372.0 - 0 ENSG00000254901.7 protein_coding BORCS8 2 OTTHUMG00000166546.4 overlapping_locus +33443 chr19 HAVANA gene 19192229 19201869 2503.0 + 0 ENSG00000064490.13 protein_coding RFXANK 1 OTTHUMG00000169224.7 +33444 chr19 HAVANA gene 19201416 19203424 1794.0 - 0 ENSG00000184162.14 protein_coding NR2C2AP 2 OTTHUMG00000169225.6 +33445 chr19 ENSEMBL gene 19232855 19232947 93.0 + 0 ENSG00000252973.1 snRNA RNU6-1028P 3 +33446 chr19 HAVANA gene 19211973 19252233 6905.0 + 0 ENSG00000130287.13 protein_coding NCAN 1 OTTHUMG00000182218.5 ncRNA_host +33447 chr19 HAVANA gene 19255638 19256141 504.0 + 0 ENSG00000280282.1 TEC AC138430.2 2 OTTHUMG00000185809.2 +33448 chr19 HAVANA gene 19255641 19262796 3569.0 - 0 ENSG00000187664.8 protein_coding HAPLN4 2 OTTHUMG00000182221.4 overlapping_locus +33449 chr19 HAVANA gene 19254748 19273369 5409.0 - 0 ENSG00000267629.3 processed_transcript AC138430.1 2 OTTHUMG00000182219.3 overlapping_locus +33450 chr19 HAVANA gene 19264364 19273391 2188.0 - 0 ENSG00000213996.12 protein_coding TM6SF2 2 OTTHUMG00000182222.5 overlapping_locus +33451 chr19 HAVANA gene 19276018 19320844 5356.0 - 0 ENSG00000105705.15 protein_coding SUGP1 2 OTTHUMG00000182223.9 +33452 chr19 HAVANA gene 19320681 19358755 11145.0 + 0 ENSG00000129933.20 protein_coding MAU2 2 OTTHUMG00000150188.13 +33453 chr19 HAVANA gene 19401979 19402603 488.0 - 0 ENSG00000267234.1 antisense AC092067.1 2 OTTHUMG00000185868.1 +33454 chr19 ENSEMBL gene 19435063 19435158 96.0 + 0 ENSG00000207821.1 miRNA MIR640 3 +33455 chr19 HAVANA gene 19385826 19508931 7296.0 + 0 ENSG00000167491.17 protein_coding GATAD2A 1 OTTHUMG00000152541.10 ncRNA_host +33456 chr19 HAVANA gene 19512418 19515685 1666.0 - 0 ENSG00000178093.13 protein_coding TSSK6 2 OTTHUMG00000182146.4 retrogene +33457 chr19 HAVANA gene 19515736 19529054 2708.0 + 0 ENSG00000186010.18 protein_coding NDUFA13 1 OTTHUMG00000162211.8 overlapping_locus +33458 chr19 HAVANA gene 19516227 19536076 1846.0 + 0 ENSG00000258674.5 protein_coding AC011448.1 2 OTTHUMG00000171813.7 overlapping_locus +33459 chr19 HAVANA gene 19528861 19537581 2959.0 + 0 ENSG00000250067.11 protein_coding YJEFN3 2 OTTHUMG00000162251.9 overlapping_locus +33460 chr19 HAVANA gene 19538248 19546659 4360.0 + 0 ENSG00000160161.9 protein_coding CILP2 2 OTTHUMG00000182148.4 +33461 chr19 HAVANA gene 19588091 19588415 325.0 - 0 ENSG00000267178.3 processed_pseudogene PHF5CP 1 OTTHUMG00000182149.3 pseudo_consens,overlapping_locus +33462 chr19 HAVANA gene 19606350 19608660 937.0 + 0 ENSG00000259242.2 antisense AC002306.1 2 OTTHUMG00000172311.2 +33463 chr19 HAVANA gene 19561707 19618916 2554.0 - 0 ENSG00000105717.13 protein_coding PBX4 2 OTTHUMG00000172310.7 overlapping_locus +33464 chr19 HAVANA gene 19623668 19628930 2980.0 - 0 ENSG00000064547.13 protein_coding LPAR2 2 OTTHUMG00000182328.2 +33465 chr19 HAVANA gene 19629476 19643667 3740.0 - 0 ENSG00000089639.10 protein_coding GMIP 2 OTTHUMG00000182329.2 +33466 chr19 HAVANA gene 19645198 19663693 8376.0 - 0 ENSG00000105726.16 protein_coding ATP13A1 2 OTTHUMG00000153016.3 +33467 chr19 HAVANA gene 19668796 19683509 6560.0 + 0 ENSG00000181896.11 protein_coding ZNF101 2 OTTHUMG00000167736.4 +33468 chr19 HAVANA gene 19699203 19699409 207.0 - 0 ENSG00000271283.1 processed_pseudogene AC011458.2 1 OTTHUMG00000184911.1 pseudo_consens +33469 chr19 HAVANA gene 19708965 19710465 617.0 + 0 ENSG00000270402.1 processed_pseudogene AC011458.1 1 OTTHUMG00000184899.1 pseudo_consens +33470 chr19 HAVANA gene 19710471 19733097 2949.0 - 0 ENSG00000105708.8 protein_coding ZNF14 2 OTTHUMG00000182362.1 +33471 chr19 HAVANA gene 19740884 19750127 1440.0 + 0 ENSG00000275540.1 unprocessed_pseudogene AC011477.7 2 OTTHUMG00000187971.1 +33472 chr19 HAVANA gene 19750618 19752544 1927.0 + 0 ENSG00000271499.1 processed_pseudogene AC011477.6 2 OTTHUMG00000184902.1 +33473 chr19 HAVANA gene 19768731 19768989 259.0 + 0 ENSG00000267693.1 processed_pseudogene AC011477.5 1 OTTHUMG00000182365.1 pseudo_consens +33474 chr19 HAVANA gene 19757366 19776423 4334.0 - 0 ENSG00000266904.5 lincRNA LINC00663 2 OTTHUMG00000182363.1 overlapping_locus +33475 chr19 HAVANA gene 19788755 19790531 921.0 - 0 ENSG00000267481.1 sense_intronic AC011477.2 2 OTTHUMG00000182368.1 overlapping_locus +33476 chr19 HAVANA gene 19761038 19821716 609.0 - 0 ENSG00000267581.1 lincRNA AC011477.4 2 OTTHUMG00000182364.1 overlapping_locus +33477 chr19 HAVANA gene 19785839 19821751 8414.0 - 0 ENSG00000081665.13 protein_coding ZNF506 1 OTTHUMG00000182367.4 overlapping_locus +33478 chr19 HAVANA gene 19776602 19836073 2355.0 + 0 ENSG00000267419.2 transcribed_unprocessed_pseudogene AC011477.1 2 OTTHUMG00000182366.2 +33479 chr19 HAVANA gene 19856975 19857527 553.0 + 0 ENSG00000270325.1 processed_pseudogene BNIP3P9 1 OTTHUMG00000184913.1 pseudo_consens +33480 chr19 HAVANA gene 19870723 19871299 577.0 - 0 ENSG00000270270.1 processed_pseudogene BNIP3P10 1 OTTHUMG00000184904.1 pseudo_consens +33481 chr19 HAVANA gene 19865886 19894674 3626.0 + 0 ENSG00000256771.3 protein_coding ZNF253 1 OTTHUMG00000182369.2 +33482 chr19 HAVANA gene 19892433 19895847 403.0 - 0 ENSG00000267565.1 antisense AC011477.3 2 OTTHUMG00000182370.1 +33483 chr19 HAVANA gene 19908268 19909146 555.0 - 0 ENSG00000273791.1 unprocessed_pseudogene AC007204.1 1 OTTHUMG00000187980.1 pseudo_consens +33484 chr19 HAVANA gene 19900913 19963464 5579.0 + 0 ENSG00000184635.15 protein_coding ZNF93 1 OTTHUMG00000182371.4 +33485 chr19 HAVANA gene 19978190 19979610 616.0 - 0 ENSG00000274800.1 unprocessed_pseudogene AC007204.2 2 OTTHUMG00000187981.1 +33486 chr19 HAVANA gene 20033444 20034332 572.0 + 0 ENSG00000268070.1 processed_pseudogene AC006539.2 1 OTTHUMG00000182651.1 pseudo_consens +33487 chr19 HAVANA gene 19997058 20039506 4968.0 - 0 ENSG00000197124.11 protein_coding ZNF682 1 OTTHUMG00000182650.2 +33488 chr19 HAVANA gene 20056466 20056594 129.0 - 0 ENSG00000274033.1 unprocessed_pseudogene AC006539.3 2 OTTHUMG00000187982.1 +33489 chr19 HAVANA gene 20062755 20063320 566.0 + 0 ENSG00000269154.1 processed_pseudogene BNIP3P13 1 OTTHUMG00000182652.1 pseudo_consens +33490 chr19 HAVANA gene 20079818 20080539 501.0 - 0 ENSG00000240673.1 processed_pseudogene AC006539.1 1 OTTHUMG00000158068.1 pseudo_consens +33491 chr19 HAVANA gene 20087013 20087576 564.0 - 0 ENSG00000274612.1 processed_pseudogene AC011447.5 1 OTTHUMG00000187983.1 pseudo_consens +33492 chr19 HAVANA gene 20125044 20125484 441.0 + 0 ENSG00000224864.4 transcribed_processed_pseudogene AC011447.1 2 OTTHUMG00000158058.1 overlapping_locus +33493 chr19 HAVANA gene 20077994 20127076 5017.0 + 0 ENSG00000213988.10 protein_coding ZNF90 2 OTTHUMG00000158057.2 overlapping_locus +33494 chr19 HAVANA gene 20136933 20137233 301.0 + 0 ENSG00000270716.1 processed_pseudogene BNIP3P15 1 OTTHUMG00000184918.1 pseudo_consens +33495 chr19 HAVANA gene 20131894 20151908 283.0 - 0 ENSG00000267220.1 transcribed_unprocessed_pseudogene AC011447.2 2 OTTHUMG00000180743.1 overlapping_locus +33496 chr19 HAVANA gene 20175013 20177063 534.0 - 0 ENSG00000267641.1 processed_pseudogene BNIP3P16 1 OTTHUMG00000180744.1 pseudo_consens,overlapping_locus +33497 chr19 HAVANA gene 20167228 20200490 4261.0 + 0 ENSG00000256229.7 protein_coding ZNF486 1 OTTHUMG00000179731.2 +33498 chr19 HAVANA gene 20206844 20206954 111.0 - 0 ENSG00000267771.1 unprocessed_pseudogene AC011447.4 2 OTTHUMG00000180745.1 overlapping_locus +33499 chr19 HAVANA gene 20207192 20209789 2598.0 - 0 ENSG00000279039.1 TEC AC011447.6 2 OTTHUMG00000175722.1 overlapping_locus +33500 chr19 HAVANA gene 20220597 20222186 1590.0 - 0 ENSG00000280079.1 TEC AC011447.7 2 OTTHUMG00000175724.1 overlapping_locus +33501 chr19 HAVANA gene 20221869 20222463 595.0 + 0 ENSG00000271524.1 processed_pseudogene BNIP3P17 1 OTTHUMG00000184916.1 pseudo_consens +33502 chr19 HAVANA gene 20249052 20250295 212.0 + 0 ENSG00000268620.1 unprocessed_pseudogene AC078899.3 2 OTTHUMG00000182653.1 +33503 chr19 HAVANA gene 20257720 20259418 1185.0 + 0 ENSG00000213985.4 processed_pseudogene AC078899.1 1 OTTHUMG00000163623.2 pseudo_consens +33504 chr19 HAVANA gene 20267817 20268391 575.0 + 0 ENSG00000269055.1 processed_pseudogene BNIP3P18 1 OTTHUMG00000182654.1 pseudo_consens +33505 chr19 HAVANA gene 20295089 20303794 1113.0 + 0 ENSG00000269274.1 unprocessed_pseudogene AC078899.4 2 OTTHUMG00000182655.1 +33506 chr19 HAVANA gene 20125377 20321305 3684.0 - 0 ENSG00000267383.6 antisense AC011447.3 2 OTTHUMG00000180742.2 overlapping_locus +33507 chr19 HAVANA gene 20323992 20324568 577.0 - 0 ENSG00000271638.1 processed_pseudogene BNIP3P19 1 OTTHUMG00000184921.1 pseudo_consens +33508 chr19 HAVANA gene 20330121 20331517 178.0 + 0 ENSG00000276294.1 unprocessed_pseudogene AC078899.5 2 OTTHUMG00000187984.1 +33509 chr19 HAVANA gene 20351502 20352079 578.0 + 0 ENSG00000271704.1 processed_pseudogene BNIP3P20 1 OTTHUMG00000184908.1 pseudo_consens +33510 chr19 HAVANA gene 20389658 20390689 212.0 + 0 ENSG00000268461.2 unprocessed_pseudogene AC078899.2 1 OTTHUMG00000187985.1 pseudo_consens +33511 chr19 ENSEMBL gene 20399272 20399354 83.0 - 0 ENSG00000238517.1 miRNA MIR1270 3 +33512 chr19 HAVANA gene 20416514 20417069 556.0 + 0 ENSG00000268174.1 processed_pseudogene BNIP3P22 1 OTTHUMG00000182681.1 pseudo_consens +33513 chr19 HAVANA gene 20340269 20424969 6008.0 - 0 ENSG00000231205.11 transcribed_unprocessed_pseudogene ZNF826P 1 OTTHUMG00000162773.4 pseudo_consens +33514 chr19 HAVANA gene 20443215 20443725 511.0 - 0 ENSG00000268335.1 processed_pseudogene BNIP3P23 1 OTTHUMG00000182683.1 pseudo_consens +33515 chr19 HAVANA gene 20432552 20528615 811.0 + 0 ENSG00000269043.1 lincRNA AC008554.1 2 OTTHUMG00000182682.1 +33516 chr19 HAVANA gene 20535825 20565809 3539.0 - 0 ENSG00000237440.8 protein_coding ZNF737 1 OTTHUMG00000179732.3 overlapping_locus +33517 chr19 HAVANA gene 20583084 20583647 564.0 - 0 ENSG00000268272.1 unprocessed_pseudogene VN1R78P 2 OTTHUMG00000182741.1 overlapping_locus +33518 chr19 HAVANA gene 20611559 20615389 628.0 + 0 ENSG00000268560.1 lincRNA AC010636.1 2 OTTHUMG00000182685.1 +33519 chr19 HAVANA gene 20553792 20661583 522.0 - 0 ENSG00000269110.1 lincRNA AC010636.2 2 OTTHUMG00000182684.1 overlapping_locus +33520 chr19 HAVANA gene 20620061 20661596 6713.0 - 0 ENSG00000188171.15 protein_coding ZNF626 2 OTTHUMG00000179733.4 overlapping_locus +33521 chr19 HAVANA gene 20674923 20696533 2174.0 + 0 ENSG00000280171.1 unprocessed_pseudogene AC010329.5 2 OTTHUMG00000189491.1 +33522 chr19 HAVANA gene 20691336 20697615 2737.0 + 0 ENSG00000269779.1 unprocessed_pseudogene AC010329.2 2 OTTHUMG00000182742.1 +33523 chr19 HAVANA gene 20746923 20755250 8328.0 - 0 ENSG00000268416.1 lincRNA AC010329.1 2 OTTHUMG00000182743.1 +33524 chr19 HAVANA gene 20758440 20758952 513.0 + 0 ENSG00000269885.1 unprocessed_pseudogene VN1R79P 2 OTTHUMG00000182744.1 +33525 chr19 HAVANA gene 20784596 20785152 557.0 - 0 ENSG00000269040.1 processed_pseudogene BNIP3P24 1 OTTHUMG00000182745.1 pseudo_consens +33526 chr19 HAVANA gene 20776304 20807322 3009.0 + 0 ENSG00000160229.11 protein_coding ZNF66 1 OTTHUMG00000167735.4 +33527 chr19 HAVANA gene 20838515 20847417 317.0 - 0 ENSG00000269373.1 unprocessed_pseudogene AC008739.2 1 OTTHUMG00000182746.1 pseudo_consens +33528 chr19 HAVANA gene 20926777 20928714 1938.0 - 0 ENSG00000279404.1 TEC AC008739.5 2 OTTHUMG00000182767.1 +33529 chr19 HAVANA gene 20923222 20950697 4668.0 + 0 ENSG00000105750.14 protein_coding ZNF85 1 OTTHUMG00000182747.5 +33530 chr19 HAVANA gene 20961057 20965140 1571.0 + 0 ENSG00000269012.2 unprocessed_pseudogene KRT18P40 1 OTTHUMG00000189492.1 pseudo_consens +33531 chr19 HAVANA gene 20972262 20983210 575.0 + 0 ENSG00000268326.1 lincRNA AC008739.1 2 OTTHUMG00000182770.1 +33532 chr19 HAVANA gene 21025915 21026041 127.0 - 0 ENSG00000271598.1 processed_pseudogene AC008739.3 1 OTTHUMG00000184933.1 pseudo_consens +33533 chr19 HAVANA gene 21020620 21060050 6845.0 + 0 ENSG00000118620.12 protein_coding ZNF430 1 OTTHUMG00000182771.2 +33534 chr19 HAVANA gene 21063924 21064261 338.0 + 0 ENSG00000268598.1 unprocessed_pseudogene VN1R80P 2 OTTHUMG00000182832.1 +33535 chr19 ENSEMBL gene 21113128 21113236 109.0 - 0 ENSG00000201035.1 rRNA_pseudogene RNA5SP469 3 +33536 chr19 HAVANA gene 21123817 21124188 372.0 + 0 ENSG00000268357.1 unprocessed_pseudogene VN1R81P 2 OTTHUMG00000182834.1 overlapping_locus +33537 chr19 HAVANA gene 21082159 21125270 8033.0 + 0 ENSG00000160352.15 protein_coding ZNF714 1 OTTHUMG00000182833.4 overlapping_locus +33538 chr19 HAVANA gene 21149648 21150438 791.0 - 0 ENSG00000240522.1 processed_pseudogene RPL7AP10 1 OTTHUMG00000158087.1 pseudo_consens +33539 chr19 HAVANA gene 21188598 21188953 356.0 + 0 ENSG00000268995.1 unprocessed_pseudogene VN1R82P 2 OTTHUMG00000182836.1 overlapping_locus +33540 chr19 HAVANA gene 21142024 21196053 14132.0 + 0 ENSG00000196705.8 protein_coding ZNF431 1 OTTHUMG00000182835.3 overlapping_locus +33541 chr19 HAVANA gene 21221645 21222746 1102.0 - 0 ENSG00000268892.1 unprocessed_pseudogene AC010620.1 2 OTTHUMG00000182837.1 +33542 chr19 HAVANA gene 21233335 21233652 318.0 + 0 ENSG00000242291.1 processed_pseudogene RPL36AP51 1 OTTHUMG00000158088.1 pseudo_consens +33543 chr19 HAVANA gene 21225098 21245241 313.0 - 0 ENSG00000269839.1 unprocessed_pseudogene AC010620.2 2 OTTHUMG00000182838.1 +33544 chr19 HAVANA gene 21276023 21276332 310.0 - 0 ENSG00000268747.1 processed_pseudogene AC022432.1 1 OTTHUMG00000182839.1 pseudo_consens +33545 chr19 HAVANA gene 21289554 21289998 445.0 - 0 ENSG00000268521.1 unprocessed_pseudogene VN1R83P 2 OTTHUMG00000182840.1 +33546 chr19 HAVANA gene 21318161 21318719 559.0 + 0 ENSG00000268322.1 processed_pseudogene BNIP3P25 1 OTTHUMG00000182842.1 pseudo_consens +33547 chr19 HAVANA gene 21291160 21329425 4325.0 - 0 ENSG00000182141.10 protein_coding ZNF708 2 OTTHUMG00000182841.3 +33548 chr19 HAVANA gene 21358930 21379302 3905.0 + 0 ENSG00000172687.13 protein_coding ZNF738 1 OTTHUMG00000141298.2 +33549 chr19 HAVANA gene 21381220 21381921 394.0 - 0 ENSG00000268731.1 processed_pseudogene AC010615.3 1 OTTHUMG00000182843.1 pseudo_consens +33550 chr19 HAVANA gene 21382865 21387177 1764.0 + 0 ENSG00000213976.4 unprocessed_pseudogene AC010615.1 2 OTTHUMG00000182844.1 +33551 chr19 HAVANA gene 21397119 21427573 11214.0 + 0 ENSG00000196268.11 protein_coding ZNF493 1 OTTHUMG00000141297.2 overlapping_locus +33552 chr19 HAVANA gene 21444241 21463908 5146.0 - 0 ENSG00000268119.5 processed_transcript AC010615.2 2 OTTHUMG00000182846.1 +33553 chr19 HAVANA gene 21405159 21491266 472.0 + 0 ENSG00000269237.1 protein_coding AC010615.4 2 OTTHUMG00000182845.1 overlapping_locus +33554 chr19 HAVANA gene 21483374 21503238 5889.0 + 0 ENSG00000268658.5 lincRNA LINC00664 2 OTTHUMG00000182847.1 overlapping_locus +33555 chr19 HAVANA gene 21521343 21521896 554.0 - 0 ENSG00000268705.1 processed_pseudogene BNIP3P26 1 OTTHUMG00000182849.1 pseudo_consens +33556 chr19 HAVANA gene 21496682 21556270 5054.0 + 0 ENSG00000197013.9 protein_coding ZNF429 1 OTTHUMG00000182848.2 overlapping_locus +33557 chr19 HAVANA gene 21554640 21569237 447.0 - 0 ENSG00000268081.1 antisense AC123912.1 2 OTTHUMG00000182850.1 +33558 chr19 HAVANA gene 21570822 21587322 1178.0 - 0 ENSG00000268555.1 lincRNA AC123912.4 2 OTTHUMG00000182863.1 +33559 chr19 HAVANA gene 21592727 21593041 315.0 + 0 ENSG00000274503.1 unprocessed_pseudogene AC123912.6 2 OTTHUMG00000187986.1 +33560 chr19 HAVANA gene 21587432 21594628 2612.0 - 0 ENSG00000268240.1 lincRNA AC123912.2 2 OTTHUMG00000182864.2 +33561 chr19 HAVANA gene 21634833 21635175 343.0 - 0 ENSG00000271182.1 processed_pseudogene AC123912.5 1 OTTHUMG00000184934.1 pseudo_consens +33562 chr19 HAVANA gene 21637974 21656300 1367.0 + 0 ENSG00000268278.1 unprocessed_pseudogene AC123912.3 2 OTTHUMG00000182868.1 +33563 chr19 HAVANA gene 21677550 21678221 672.0 - 0 ENSG00000268433.1 processed_pseudogene MTDHP3 1 OTTHUMG00000182869.1 pseudo_consens +33564 chr19 HAVANA gene 21709522 21710191 670.0 + 0 ENSG00000268535.1 processed_pseudogene MTDHP4 1 OTTHUMG00000182870.1 pseudo_consens +33565 chr19 HAVANA gene 21719801 21720035 235.0 - 0 ENSG00000268117.1 unprocessed_pseudogene VN1R84P 2 OTTHUMG00000182871.1 +33566 chr19 HAVANA gene 21750747 21753438 2692.0 + 0 ENSG00000269845.1 transcribed_processed_pseudogene AC092364.2 1 OTTHUMG00000182873.1 pseudo_consens +33567 chr19 HAVANA gene 21722766 21767628 6612.0 - 0 ENSG00000197020.10 protein_coding ZNF100 1 OTTHUMG00000182872.2 +33568 chr19 HAVANA gene 21768772 21793860 921.0 - 0 ENSG00000268184.1 lincRNA AC092364.1 2 OTTHUMG00000182897.1 +33569 chr19 HAVANA gene 21800480 21801266 787.0 + 0 ENSG00000269136.1 processed_pseudogene BRI3BPP1 1 OTTHUMG00000182874.1 pseudo_consens +33570 chr19 HAVANA gene 21826513 21827279 412.0 + 0 ENSG00000268438.1 processed_pseudogene BNIP3P27 1 OTTHUMG00000182899.1 pseudo_consens +33571 chr19 HAVANA gene 21804949 21852125 8649.0 - 0 ENSG00000198521.11 protein_coding ZNF43 1 OTTHUMG00000128543.3 +33572 chr19 HAVANA gene 21940820 21941533 714.0 + 0 ENSG00000269615.1 processed_pseudogene MTDHP2 2 OTTHUMG00000182900.1 +33573 chr19 HAVANA gene 21965708 21968529 2822.0 - 0 ENSG00000279377.1 TEC AC003973.3 2 OTTHUMG00000182914.1 overlapping_locus +33574 chr19 HAVANA gene 21997648 21998840 1193.0 + 0 ENSG00000271095.1 processed_pseudogene BNIP3P28 1 OTTHUMG00000184935.1 pseudo_consens +33575 chr19 HAVANA gene 21932958 22010949 6867.0 - 0 ENSG00000160321.14 protein_coding ZNF208 2 OTTHUMG00000182913.2 overlapping_locus +33576 chr19 HAVANA gene 22017959 22036315 1394.0 - 0 ENSG00000269504.1 lincRNA AC003973.2 2 OTTHUMG00000182925.2 +33577 chr19 HAVANA gene 22043500 22050005 546.0 - 0 ENSG00000269199.1 lincRNA AC003973.1 2 OTTHUMG00000182926.1 +33578 chr19 HAVANA gene 22065828 22066398 571.0 - 0 ENSG00000269742.1 processed_pseudogene BNIP3P29 1 OTTHUMG00000182928.1 pseudo_consens +33579 chr19 HAVANA gene 22052452 22091480 5029.0 + 0 ENSG00000197134.11 protein_coding ZNF257 1 OTTHUMG00000182927.4 +33580 chr19 HAVANA gene 22128627 22130318 1059.0 - 0 ENSG00000269505.2 processed_pseudogene ZNF92P2 2 OTTHUMG00000182929.1 +33581 chr19 HAVANA gene 22130325 22130489 165.0 + 0 ENSG00000268116.1 processed_pseudogene AC073539.2 1 OTTHUMG00000182930.1 pseudo_consens +33582 chr19 HAVANA gene 22137931 22138981 1051.0 + 0 ENSG00000268140.1 processed_pseudogene PCGF7P 1 OTTHUMG00000182931.1 pseudo_consens +33583 chr19 HAVANA gene 22140532 22141117 586.0 + 0 ENSG00000269575.1 processed_pseudogene MTDHP5 1 OTTHUMG00000182932.1 pseudo_consens +33584 chr19 HAVANA gene 22174766 22175191 426.0 - 0 ENSG00000269345.1 unprocessed_pseudogene VN1R85P 2 OTTHUMG00000182933.1 +33585 chr19 HAVANA gene 22203128 22204003 574.0 + 0 ENSG00000268079.1 processed_pseudogene BNIP3P30 1 OTTHUMG00000182935.1 pseudo_consens +33586 chr19 HAVANA gene 22215634 22215661 28.0 - 0 ENSG00000282732.1 unprocessed_pseudogene AC073539.7 2 OTTHUMG00000191398.1 +33587 chr19 HAVANA gene 22179091 22215775 3088.0 - 0 ENSG00000196109.7 protein_coding ZNF676 2 OTTHUMG00000182934.3 +33588 chr19 HAVANA gene 22243254 22245347 2094.0 - 0 ENSG00000267872.1 lincRNA AC073539.1 2 OTTHUMG00000182936.1 +33589 chr19 HAVANA gene 22259693 22261335 386.0 + 0 ENSG00000268597.1 lincRNA AC073539.3 2 OTTHUMG00000182937.1 +33590 chr19 HAVANA gene 22298977 22299868 566.0 - 0 ENSG00000270191.1 processed_pseudogene BNIP3P31 1 OTTHUMG00000184950.1 pseudo_consens +33591 chr19 HAVANA gene 22286408 22317176 3877.0 + 0 ENSG00000196350.8 protein_coding ZNF729 2 OTTHUMG00000182938.2 +33592 chr19 HAVANA gene 22362589 22362825 237.0 + 0 ENSG00000268685.1 processed_pseudogene AC011494.1 1 OTTHUMG00000182939.1 pseudo_consens +33593 chr19 HAVANA gene 22368599 22368952 354.0 - 0 ENSG00000236312.3 processed_pseudogene RPL34P34 1 OTTHUMG00000158097.1 pseudo_consens +33594 chr19 HAVANA gene 22422513 22426045 180.0 + 0 ENSG00000269796.1 lincRNA AC011516.1 2 OTTHUMG00000182941.1 +33595 chr19 HAVANA gene 22447934 22448777 554.0 - 0 ENSG00000268830.1 processed_pseudogene BNIP3P32 1 OTTHUMG00000182977.1 pseudo_consens,overlapping_locus +33596 chr19 HAVANA gene 22455988 22456459 472.0 + 0 ENSG00000270947.1 lincRNA AC025811.1 2 OTTHUMG00000184951.1 +33597 chr19 HAVANA gene 22457329 22458212 569.0 - 0 ENSG00000268717.1 processed_pseudogene BNIP3P33 1 OTTHUMG00000182978.1 pseudo_consens,overlapping_locus +33598 chr19 HAVANA gene 22463922 22473036 2304.0 + 0 ENSG00000269138.1 unprocessed_pseudogene ZNF209P 2 OTTHUMG00000182979.1 +33599 chr19 HAVANA gene 22501699 22501948 250.0 - 0 ENSG00000270317.1 processed_pseudogene AC004004.1 2 OTTHUMG00000184952.1 overlapping_locus +33600 chr19 HAVANA gene 22520995 22527949 3355.0 - 0 ENSG00000260599.1 sense_intronic AC011467.1 2 OTTHUMG00000175727.1 overlapping_locus +33601 chr19 HAVANA gene 22391019 22532485 3291.0 - 0 ENSG00000197360.9 protein_coding ZNF98 1 OTTHUMG00000182940.3 overlapping_locus +33602 chr19 HAVANA gene 22532626 22533494 685.0 + 0 ENSG00000269364.1 lincRNA LINC01233 1 OTTHUMG00000182980.1 +33603 chr19 ENSEMBL gene 22555261 22555367 107.0 + 0 ENSG00000207397.1 snRNA RNU6-1179P 3 +33604 chr19 HAVANA gene 22595479 22596163 320.0 - 0 ENSG00000271149.1 unprocessed_pseudogene AC011467.6 2 OTTHUMG00000184953.1 +33605 chr19 ENSEMBL gene 22601485 22601707 223.0 + 0 ENSG00000240713.3 misc_RNA RN7SL860P 3 +33606 chr19 HAVANA gene 22596257 22603550 2648.0 + 0 ENSG00000269332.5 transcribed_unprocessed_pseudogene GOLGA2P9 2 OTTHUMG00000182981.1 overlapping_locus +33607 chr19 HAVANA gene 22605739 22608211 607.0 + 0 ENSG00000269025.2 transcribed_processed_pseudogene AC011467.4 2 OTTHUMG00000182983.1 overlapping_locus +33608 chr19 HAVANA gene 22603269 22608501 429.0 + 0 ENSG00000268823.2 processed_transcript AC011467.3 2 OTTHUMG00000182982.1 overlapping_locus +33609 chr19 HAVANA gene 22609606 22610601 996.0 + 0 ENSG00000269316.1 processed_pseudogene AC011467.5 2 OTTHUMG00000182984.1 +33610 chr19 HAVANA gene 22620483 22620724 242.0 + 0 ENSG00000268589.1 unprocessed_pseudogene AC011467.2 2 OTTHUMG00000182986.1 +33611 chr19 HAVANA gene 22615557 22623971 1112.0 - 0 ENSG00000268038.1 lincRNA LINC01785 2 OTTHUMG00000182985.2 +33612 chr19 HAVANA gene 22634324 22667670 4245.0 + 0 ENSG00000229676.2 protein_coding ZNF492 2 OTTHUMG00000182987.1 +33613 chr19 HAVANA gene 22685167 22686732 1566.0 + 0 ENSG00000198153.8 unprocessed_pseudogene ZNF849P 2 OTTHUMG00000182989.1 +33614 chr19 HAVANA gene 22699352 22699685 334.0 + 0 ENSG00000241282.1 processed_pseudogene RPL34P33 1 OTTHUMG00000158099.1 pseudo_consens +33615 chr19 HAVANA gene 22708834 22709314 481.0 - 0 ENSG00000270475.1 processed_pseudogene AC024563.2 2 OTTHUMG00000184954.1 overlapping_locus +33616 chr19 HAVANA gene 22665552 22716991 870.0 - 0 ENSG00000268981.5 antisense AC024563.1 2 OTTHUMG00000182988.1 overlapping_locus +33617 chr19 HAVANA gene 22742924 22743410 487.0 - 0 ENSG00000268789.1 unprocessed_pseudogene VN1R87P 2 OTTHUMG00000182990.1 +33618 chr19 HAVANA gene 22770375 22770622 248.0 + 0 ENSG00000279966.2 unprocessed_pseudogene AC008626.2 2 OTTHUMG00000191388.1 +33619 chr19 HAVANA gene 22770937 22771191 255.0 + 0 ENSG00000270518.2 unprocessed_pseudogene AC008626.1 2 OTTHUMG00000191389.1 +33620 chr19 HAVANA gene 22773853 22774424 572.0 + 0 ENSG00000269509.1 processed_pseudogene BNIP3P34 1 OTTHUMG00000183119.1 pseudo_consens +33621 chr19 HAVANA gene 22752183 22784107 7883.0 - 0 ENSG00000213973.8 protein_coding ZNF99 2 OTTHUMG00000182992.2 +33622 chr19 HAVANA gene 22840432 22840921 490.0 - 0 ENSG00000271655.1 processed_pseudogene BNIP3P35 1 OTTHUMG00000184955.1 pseudo_consens +33623 chr19 HAVANA gene 22832321 22858667 1835.0 + 0 ENSG00000268696.2 protein_coding ZNF723 2 OTTHUMG00000183120.2 +33624 chr19 HAVANA gene 22861303 22861594 292.0 + 0 ENSG00000268541.1 unprocessed_pseudogene VN1R88P 2 OTTHUMG00000183121.1 +33625 chr19 HAVANA gene 22907086 22914289 383.0 - 0 ENSG00000268296.1 lincRNA AC022145.1 2 OTTHUMG00000183122.2 +33626 chr19 HAVANA gene 22925377 22925547 171.0 + 0 ENSG00000269458.1 unprocessed_pseudogene AC022145.2 2 OTTHUMG00000183123.1 +33627 chr19 HAVANA gene 22994968 22995847 574.0 + 0 ENSG00000271661.1 processed_pseudogene BNIP3P36 1 OTTHUMG00000184956.1 pseudo_consens +33628 chr19 HAVANA gene 22975468 23003176 2192.0 - 0 ENSG00000269067.1 protein_coding ZNF728 1 OTTHUMG00000183124.2 +33629 chr19 HAVANA gene 23015075 23023697 1024.0 - 0 ENSG00000261558.1 lincRNA LINC01859 2 OTTHUMG00000175742.1 +33630 chr19 HAVANA gene 23046958 23061752 2119.0 - 0 ENSG00000261615.6 lincRNA LINC01858 2 OTTHUMG00000175741.2 +33631 chr19 HAVANA gene 23068473 23071476 630.0 - 0 ENSG00000269543.5 lincRNA AC074135.2 2 OTTHUMG00000183225.1 +33632 chr19 HAVANA gene 23075201 23100361 967.0 + 0 ENSG00000267886.1 lincRNA AC074135.1 2 OTTHUMG00000183226.1 overlapping_locus +33633 chr19 HAVANA gene 23123188 23124088 901.0 - 0 ENSG00000270479.1 processed_pseudogene BNIP3P37 1 OTTHUMG00000184957.1 pseudo_consens +33634 chr19 HAVANA gene 23126569 23127792 1224.0 - 0 ENSG00000267920.1 processed_pseudogene SNX6P1 1 OTTHUMG00000183229.1 pseudo_consens +33635 chr19 HAVANA gene 23125665 23128543 896.0 + 0 ENSG00000268105.1 processed_pseudogene AC124856.1 1 OTTHUMG00000183228.1 pseudo_consens,overlapping_locus +33636 chr19 HAVANA gene 23075210 23147219 3291.0 + 0 ENSG00000183850.13 protein_coding ZNF730 2 OTTHUMG00000183227.2 overlapping_locus +33637 chr19 HAVANA gene 23204010 23204556 547.0 + 0 ENSG00000269471.1 processed_pseudogene AC092329.2 2 OTTHUMG00000183230.1 +33638 chr19 HAVANA gene 23236308 23236851 544.0 + 0 ENSG00000268469.1 processed_pseudogene BNIP3P38 1 OTTHUMG00000183232.1 pseudo_consens +33639 chr19 HAVANA gene 23221599 23250390 3322.0 - 0 ENSG00000196081.9 protein_coding ZNF724 2 OTTHUMG00000191860.1 overlapping_locus +33640 chr19 HAVANA gene 23255053 23257939 2887.0 - 0 ENSG00000269837.1 transcribed_processed_pseudogene IPO5P1 1 OTTHUMG00000183233.1 pseudo_consens,overlapping_locus +33641 chr19 HAVANA gene 23222755 23274221 1904.0 - 0 ENSG00000283201.1 protein_coding AC092329.3 2 OTTHUMG00000183231.3 overlapping_locus +33642 chr19 HAVANA gene 23257255 23274232 574.0 - 0 ENSG00000269107.1 lincRNA AC092329.1 2 OTTHUMG00000183234.1 overlapping_locus +33643 chr19 HAVANA gene 23259906 23274251 5091.0 - 0 ENSG00000284428.1 processed_transcript IPO5P1 2 OTTHUMG00000183235.2 overlapping_locus +33644 chr19 HAVANA gene 23288620 23289345 726.0 + 0 ENSG00000268794.1 unprocessed_pseudogene VN1R90P 2 OTTHUMG00000183236.1 +33645 chr19 HAVANA gene 23290849 23291017 169.0 + 0 ENSG00000268148.1 unprocessed_pseudogene VN1R91P 2 OTTHUMG00000183237.1 +33646 chr19 HAVANA gene 23323968 23329101 5134.0 + 0 ENSG00000267934.1 antisense AC010300.1 2 OTTHUMG00000183269.1 +33647 chr19 HAVANA gene 23380317 23380876 560.0 + 0 ENSG00000269431.1 processed_pseudogene BNIP3P8 1 OTTHUMG00000183270.1 pseudo_consens +33648 chr19 HAVANA gene 23384530 23385293 764.0 + 0 ENSG00000268992.1 processed_pseudogene CDC42EP3P1 1 OTTHUMG00000183271.1 pseudo_consens +33649 chr19 HAVANA gene 23304991 23395560 10397.0 - 0 ENSG00000167232.13 protein_coding ZNF91 1 OTTHUMG00000183268.3 +33650 chr19 HAVANA gene 23399233 23416075 3296.0 - 0 ENSG00000269416.5 lincRNA LINC01224 2 OTTHUMG00000183272.1 +33651 chr19 HAVANA gene 23444262 23445189 928.0 + 0 ENSG00000268908.1 unprocessed_pseudogene VN1R92P 2 OTTHUMG00000183273.1 +33652 chr19 HAVANA gene 23479762 23480468 208.0 - 0 ENSG00000275201.1 unprocessed_pseudogene AC074140.1 2 OTTHUMG00000187991.1 +33653 chr19 HAVANA gene 23492428 23512656 1632.0 - 0 ENSG00000268100.1 unprocessed_pseudogene ZNF725P 2 OTTHUMG00000183274.1 +33654 chr19 HAVANA gene 23597341 23597592 252.0 + 0 ENSG00000240231.1 processed_pseudogene RPS27P29 1 OTTHUMG00000158101.1 pseudo_consens,overlapping_locus +33655 chr19 HAVANA gene 23596122 23598159 1595.0 + 0 ENSG00000268455.1 unprocessed_pseudogene AC073544.1 1 OTTHUMG00000183385.1 pseudo_consens,overlapping_locus +33656 chr19 HAVANA gene 23602567 23603106 540.0 + 0 ENSG00000269320.1 unprocessed_pseudogene VN1R93P 2 OTTHUMG00000183386.1 +33657 chr19 HAVANA gene 23525631 23687220 6785.0 - 0 ENSG00000197372.9 protein_coding ZNF675 1 OTTHUMG00000183384.2 +33658 chr19 HAVANA gene 23739195 23758891 6497.0 - 0 ENSG00000196172.9 protein_coding ZNF681 2 OTTHUMG00000150831.4 +33659 chr19 HAVANA gene 23798924 23799477 554.0 - 0 ENSG00000269662.1 processed_pseudogene BNIP3P39 1 OTTHUMG00000183387.1 pseudo_consens +33660 chr19 HAVANA gene 23827162 23828049 888.0 + 0 ENSG00000225178.5 processed_pseudogene RPSAP58 1 OTTHUMG00000158122.3 pseudo_consens,overlapping_locus +33661 chr19 HAVANA gene 23762944 23833314 3242.0 + 0 ENSG00000233836.7 transcribed_unprocessed_pseudogene AC139769.1 1 OTTHUMG00000158123.3 pseudo_consens,overlapping_locus +33662 chr19 HAVANA gene 23842549 23843230 175.0 + 0 ENSG00000277493.1 unprocessed_pseudogene AC139769.3 2 OTTHUMG00000187994.1 +33663 chr19 HAVANA gene 23817599 23874701 2291.0 - 0 ENSG00000267924.1 lincRNA AC139769.2 2 OTTHUMG00000183388.2 +33664 chr19 HAVANA gene 23927788 23929287 1500.0 + 0 ENSG00000269397.1 sense_intronic AC011503.2 2 OTTHUMG00000183390.1 overlapping_locus +33665 chr19 HAVANA gene 23935220 23936173 954.0 + 0 ENSG00000269421.1 unprocessed_pseudogene ZNF92P3 2 OTTHUMG00000183391.1 overlapping_locus +33666 chr19 HAVANA gene 23914876 23945159 6289.0 + 0 ENSG00000213967.10 protein_coding ZNF726 1 OTTHUMG00000167681.5 overlapping_locus +33667 chr19 HAVANA gene 23919081 23957930 2233.0 - 0 ENSG00000269289.5 antisense AC011503.1 2 OTTHUMG00000183389.1 +33668 chr19 ENSEMBL gene 24004358 24004507 150.0 - 0 ENSG00000201966.1 rRNA_pseudogene RNA5-8SP4 3 +33669 chr19 HAVANA gene 24033445 24066909 2191.0 + 0 ENSG00000268362.5 lincRNA AC092279.1 2 OTTHUMG00000183392.1 +33670 chr19 HAVANA gene 24078481 24080669 2189.0 + 0 ENSG00000279425.1 TEC AC092279.2 2 OTTHUMG00000183393.1 +33671 chr19 HAVANA gene 24098425 24098980 556.0 - 0 ENSG00000268058.1 processed_pseudogene BNIP3P40 1 OTTHUMG00000183395.1 pseudo_consens +33672 chr19 HAVANA gene 24033405 24129961 7602.0 + 0 ENSG00000213096.10 protein_coding ZNF254 2 OTTHUMG00000183394.1 +33673 chr19 HAVANA gene 24146701 24147081 381.0 + 0 ENSG00000276030.1 lincRNA AC073534.1 2 OTTHUMG00000186705.1 +33674 chr19 HAVANA gene 24162370 24163425 1056.0 - 0 ENSG00000268442.1 processed_pseudogene HAVCR1P1 1 OTTHUMG00000183396.1 pseudo_consens +33675 chr19 HAVANA gene 27639300 27639665 366.0 - 0 ENSG00000279882.1 TEC AC112702.1 2 OTTHUMG00000183551.1 overlapping_locus +33676 chr19 HAVANA gene 27638483 27646483 595.0 - 0 ENSG00000267696.6 lincRNA ERVK-28 2 OTTHUMG00000180737.2 overlapping_locus +33677 chr19 HAVANA gene 27757184 27760849 3666.0 - 0 ENSG00000261770.1 lincRNA AC006504.1 2 OTTHUMG00000175751.2 overlapping_locus +33678 chr19 HAVANA gene 27684580 27793940 7958.0 - 0 ENSG00000261824.6 lincRNA LINC00662 2 OTTHUMG00000175754.2 overlapping_locus +33679 chr19 HAVANA gene 27802838 27803472 635.0 + 0 ENSG00000281468.1 sense_intronic AC006504.8 2 OTTHUMG00000189755.1 +33680 chr19 HAVANA gene 27803538 27804060 523.0 + 0 ENSG00000267264.1 processed_pseudogene AC006504.3 2 OTTHUMG00000180739.1 overlapping_locus +33681 chr19 HAVANA gene 27805423 27806205 783.0 - 0 ENSG00000267323.1 processed_pseudogene SLC25A1P5 1 OTTHUMG00000180740.1 pseudo_consens +33682 chr19 HAVANA gene 27849730 27889222 458.0 - 0 ENSG00000266977.1 lincRNA AC006504.2 2 OTTHUMG00000180741.1 overlapping_locus +33683 chr19 HAVANA gene 27892495 27898927 1568.0 - 0 ENSG00000267389.2 unprocessed_pseudogene AC006504.4 2 OTTHUMG00000180769.2 overlapping_locus +33684 chr19 HAVANA gene 27908356 27908554 199.0 - 0 ENSG00000267768.1 processed_pseudogene AC006504.6 2 OTTHUMG00000180770.1 +33685 chr19 HAVANA gene 27793463 27918863 5141.0 + 0 ENSG00000267575.6 lincRNA AC006504.5 2 OTTHUMG00000185849.2 overlapping_locus +33686 chr19 HAVANA gene 27918943 27929370 625.0 + 0 ENSG00000267630.1 transcribed_unprocessed_pseudogene AC005758.1 2 OTTHUMG00000180771.2 overlapping_locus +33687 chr19 HAVANA gene 27983032 27983332 301.0 - 0 ENSG00000266906.1 processed_pseudogene AC005357.1 2 OTTHUMG00000180773.1 +33688 chr19 HAVANA gene 27902595 27984743 1569.0 + 0 ENSG00000267623.3 transcribed_unprocessed_pseudogene AC005357.2 2 OTTHUMG00000180772.4 overlapping_locus +33689 chr19 HAVANA gene 27793488 27984984 924.0 + 0 ENSG00000272635.1 processed_transcript AC006504.7 2 OTTHUMG00000180738.2 overlapping_locus +33690 chr19 HAVANA gene 28065267 28125430 576.0 + 0 ENSG00000267509.5 lincRNA AC010511.1 2 OTTHUMG00000180780.1 +33691 chr19 HAVANA gene 28294093 28313500 575.0 - 0 ENSG00000266928.1 lincRNA AC020905.1 2 OTTHUMG00000180781.1 +33692 chr19 HAVANA gene 28316705 28386204 1155.0 - 0 ENSG00000267320.5 lincRNA AC005580.1 2 OTTHUMG00000180782.1 +33693 chr19 HAVANA gene 28394851 28396428 556.0 - 0 ENSG00000267238.1 lincRNA AC093074.1 2 OTTHUMG00000180783.1 +33694 chr19 HAVANA gene 28418483 28429490 1570.0 - 0 ENSG00000260725.1 lincRNA AC005307.1 2 OTTHUMG00000175757.1 +33695 chr19 HAVANA gene 28509238 28518728 579.0 + 0 ENSG00000267423.1 lincRNA AC005616.1 2 OTTHUMG00000180804.1 +33696 chr19 HAVANA gene 28437060 28535277 1270.0 - 0 ENSG00000267243.6 lincRNA AC005381.1 2 OTTHUMG00000180802.2 overlapping_locus +33697 chr19 HAVANA gene 28606688 28615229 4453.0 + 0 ENSG00000266976.1 lincRNA AC079466.1 2 OTTHUMG00000180814.2 +33698 chr19 HAVANA gene 28491864 28632728 1269.0 - 0 ENSG00000266893.1 lincRNA AC005394.1 2 OTTHUMG00000180803.1 overlapping_locus +33699 chr19 HAVANA gene 28602379 28648303 185.0 - 0 ENSG00000267537.1 lincRNA AC079466.2 2 OTTHUMG00000180805.1 overlapping_locus +33700 chr19 HAVANA gene 28435388 28727680 3113.0 - 0 ENSG00000283403.1 processed_transcript AC005394.2 2 OTTHUMG00000191774.1 overlapping_locus +33701 chr19 HAVANA gene 28683071 28727777 2102.0 - 0 ENSG00000283269.1 transcribed_unprocessed_pseudogene AC005524.1 2 OTTHUMG00000191775.1 overlapping_locus +33702 chr19 HAVANA gene 28790812 28792871 1400.0 - 0 ENSG00000267799.1 processed_pseudogene MAN1A2P1 1 OTTHUMG00000181945.1 pseudo_consens +33703 chr19 HAVANA gene 28869796 28879170 437.0 + 0 ENSG00000267617.1 lincRNA AC007795.1 2 OTTHUMG00000181981.1 +33704 chr19 HAVANA gene 28892931 28895949 487.0 + 0 ENSG00000267683.1 lincRNA AC008991.2 2 OTTHUMG00000181983.1 overlapping_locus +33705 chr19 HAVANA gene 28949437 28950200 240.0 - 0 ENSG00000267027.1 lincRNA AC011524.1 2 OTTHUMG00000181984.1 +33706 chr19 HAVANA gene 28883430 28953245 537.0 + 0 ENSG00000267528.1 lincRNA AC008991.1 2 OTTHUMG00000181982.1 overlapping_locus +33707 chr19 HAVANA gene 28960506 28964943 399.0 - 0 ENSG00000267240.1 lincRNA AC011524.2 2 OTTHUMG00000181985.1 +33708 chr19 HAVANA gene 28965131 28970874 4183.0 + 0 ENSG00000267339.5 lincRNA LINC00906 2 OTTHUMG00000181995.2 +33709 chr19 ENSEMBL gene 29001670 29001775 106.0 + 0 ENSG00000252272.1 rRNA_pseudogene RNA5SP470 3 +33710 chr19 HAVANA gene 29002555 29013955 2019.0 + 0 ENSG00000267014.5 lincRNA LINC01532 2 OTTHUMG00000181996.1 +33711 chr19 HAVANA gene 29205321 29213541 3475.0 - 0 ENSG00000169021.5 protein_coding UQCRFS1 2 OTTHUMG00000181997.2 +33712 chr19 HAVANA gene 29213235 29215815 817.0 + 0 ENSG00000267498.1 lincRNA AC007786.1 2 OTTHUMG00000181998.1 +33713 chr19 HAVANA gene 29220864 29221666 803.0 + 0 ENSG00000276251.1 lincRNA AC007786.2 2 OTTHUMG00000186711.1 +33714 chr19 HAVANA gene 29222542 29223137 596.0 + 0 ENSG00000276631.1 lincRNA AC007786.3 2 OTTHUMG00000186712.1 +33715 chr19 ENSEMBL gene 29233090 29233385 296.0 - 0 ENSG00000241604.3 misc_RNA RN7SL340P 3 +33716 chr19 HAVANA gene 29448038 29448380 250.0 + 0 ENSG00000267574.1 lincRNA AC011474.3 2 OTTHUMG00000182000.1 +33717 chr19 HAVANA gene 29506966 29509041 2076.0 - 0 ENSG00000279387.1 TEC AC011474.4 2 OTTHUMG00000182001.1 overlapping_locus +33718 chr19 HAVANA gene 29287011 29525752 3126.0 - 0 ENSG00000264515.5 processed_transcript AC011474.1 2 OTTHUMG00000178958.1 overlapping_locus +33719 chr19 HAVANA gene 29489775 29526948 543.0 - 0 ENSG00000266248.1 antisense AC011474.2 2 OTTHUMG00000178959.1 overlapping_locus +33720 chr19 HAVANA gene 29526499 29564479 1488.0 + 0 ENSG00000187135.7 protein_coding VSTM2B 2 OTTHUMG00000182002.1 +33721 chr19 HAVANA gene 29604017 29617237 6574.0 + 0 ENSG00000105171.9 protein_coding POP4 2 OTTHUMG00000182020.3 +33722 chr19 HAVANA gene 29665056 29675457 2681.0 + 0 ENSG00000166289.5 protein_coding PLEKHF1 2 OTTHUMG00000182097.2 +33723 chr19 HAVANA gene 29698886 29715789 5378.0 - 0 ENSG00000131943.17 protein_coding C19orf12 1 OTTHUMG00000149838.6 +33724 chr19 HAVANA gene 29811898 29824308 2550.0 + 0 ENSG00000105173.13 protein_coding CCNE1 1 OTTHUMG00000177626.3 +33725 chr19 HAVANA gene 29901696 29901869 174.0 - 0 ENSG00000267433.1 unprocessed_pseudogene AC008798.1 2 OTTHUMG00000182100.1 +33726 chr19 HAVANA gene 29915862 29917830 1969.0 + 0 ENSG00000278895.1 TEC AC008507.3 2 OTTHUMG00000182102.1 +33727 chr19 HAVANA gene 29921182 29921653 472.0 + 0 ENSG00000267258.1 processed_pseudogene PPIAP58 1 OTTHUMG00000182101.1 pseudo_consens +33728 chr19 HAVANA gene 29956369 29956988 620.0 - 0 ENSG00000242100.2 processed_pseudogene RPL9P32 1 OTTHUMG00000158141.2 pseudo_consens +33729 chr19 HAVANA gene 29923644 30016608 5432.0 + 0 ENSG00000105176.17 protein_coding URI1 1 OTTHUMG00000177923.5 +33730 chr19 HAVANA gene 30028741 30029916 1176.0 - 0 ENSG00000267006.1 lincRNA AC008507.2 2 OTTHUMG00000182103.1 +33731 chr19 HAVANA gene 30037285 30037411 127.0 + 0 ENSG00000267692.1 processed_pseudogene TAF9P3 1 OTTHUMG00000182104.1 pseudo_consens +33732 chr19 HAVANA gene 30037423 30038181 759.0 + 0 ENSG00000266910.2 processed_pseudogene AC008507.1 1 OTTHUMG00000182105.2 pseudo_consens +33733 chr19 HAVANA gene 30219666 30228715 420.0 - 0 ENSG00000267223.1 antisense AC005597.1 2 OTTHUMG00000182111.1 +33734 chr19 HAVANA gene 30553956 30558058 4103.0 + 0 ENSG00000280061.1 TEC AC011504.1 2 OTTHUMG00000182315.1 overlapping_locus +33735 chr19 HAVANA gene 30665274 30668647 554.0 - 0 ENSG00000267760.1 lincRNA AC011478.1 2 OTTHUMG00000182316.1 +33736 chr19 HAVANA gene 30228290 30713538 8631.0 + 0 ENSG00000198597.8 protein_coding ZNF536 2 OTTHUMG00000182112.8 overlapping_locus +33737 chr19 HAVANA gene 30850975 30872507 567.0 + 0 ENSG00000267081.1 lincRNA AC011507.1 2 OTTHUMG00000182317.1 +33738 chr19 HAVANA gene 30907199 30909155 385.0 + 0 ENSG00000261316.1 lincRNA LINC01834 2 OTTHUMG00000175758.1 +33739 chr19 HAVANA gene 30946582 30957192 561.0 + 0 ENSG00000267378.1 lincRNA AC020897.1 2 OTTHUMG00000182318.1 +33740 chr19 HAVANA gene 31100304 31147981 5059.0 + 0 ENSG00000284430.1 lincRNA AC020912.1 2 OTTHUMG00000191896.1 +33741 chr19 HAVANA gene 31167516 31207663 677.0 + 0 ENSG00000267777.1 lincRNA LINC01791 2 OTTHUMG00000182320.1 +33742 chr19 HAVANA gene 31274945 31349547 5817.0 - 0 ENSG00000121297.6 protein_coding TSHZ3 2 OTTHUMG00000150184.3 +33743 chr19 HAVANA gene 31364297 31366098 1802.0 + 0 ENSG00000278875.1 TEC AC025809.2 2 OTTHUMG00000175760.1 overlapping_locus +33744 chr19 HAVANA gene 31348881 31417794 560.0 + 0 ENSG00000267662.1 antisense AC025809.1 2 OTTHUMG00000182322.1 overlapping_locus +33745 chr19 HAVANA gene 31421997 31427302 446.0 + 0 ENSG00000267636.1 lincRNA AC008992.1 2 OTTHUMG00000180516.1 +33746 chr19 HAVANA gene 31465653 31466431 293.0 + 0 ENSG00000267599.1 lincRNA AC008794.2 2 OTTHUMG00000180517.1 +33747 chr19 HAVANA gene 31542039 31554797 560.0 + 0 ENSG00000267407.1 lincRNA AC008794.1 2 OTTHUMG00000180229.1 +33748 chr19 HAVANA gene 31588196 31593781 1778.0 + 0 ENSG00000267465.6 lincRNA AC011525.2 2 OTTHUMG00000180518.3 +33749 chr19 HAVANA gene 31588040 31595720 5676.0 - 0 ENSG00000261400.1 lincRNA AC011525.1 2 OTTHUMG00000175764.3 +33750 chr19 ENSEMBL gene 31655356 31655461 106.0 - 0 ENSG00000252780.1 rRNA_pseudogene RNA5SP471 3 +33751 chr19 ENSEMBL gene 31787148 31787255 108.0 - 0 ENSG00000201894.1 snRNA RNU6-967P 3 +33752 chr19 HAVANA gene 31886704 31908284 536.0 - 0 ENSG00000267012.1 lincRNA AC011456.1 2 OTTHUMG00000180231.1 +33753 chr19 HAVANA gene 32025862 32056865 1853.0 + 0 ENSG00000267779.5 lincRNA LINC01533 2 OTTHUMG00000180234.1 +33754 chr19 HAVANA gene 31859103 32072082 3829.0 - 0 ENSG00000267489.3 lincRNA LINC01837 2 OTTHUMG00000180233.3 +33755 chr19 HAVANA gene 32102088 32105916 2908.0 - 0 ENSG00000267204.1 lincRNA LINC01782 2 OTTHUMG00000180236.1 +33756 chr19 HAVANA gene 32103583 32106537 863.0 + 0 ENSG00000267133.1 lincRNA AC011518.1 2 OTTHUMG00000180237.1 +33757 chr19 ENSEMBL gene 32243965 32244083 119.0 - 0 ENSG00000200738.1 rRNA_pseudogene RNA5SP472 3 +33758 chr19 HAVANA gene 32345594 32387667 11239.0 + 0 ENSG00000168813.16 protein_coding ZNF507 2 OTTHUMG00000180220.5 +33759 chr19 HAVANA gene 32390050 32405560 972.0 - 0 ENSG00000267213.4 antisense AC007773.1 2 OTTHUMG00000180221.2 +33760 chr19 HAVANA gene 32405543 32485895 10781.0 + 0 ENSG00000178904.18 protein_coding DPY19L3 2 OTTHUMG00000180222.8 +33761 chr19 HAVANA gene 32581068 32587452 2253.0 + 0 ENSG00000105185.11 protein_coding PDCD5 2 OTTHUMG00000180224.6 +33762 chr19 ENSEMBL gene 32608337 32608469 133.0 - 0 ENSG00000201388.1 snoRNA SNORA68B 3 +33763 chr19 HAVANA gene 32636078 32636475 398.0 + 0 ENSG00000242325.1 processed_pseudogene RPS12P31 1 OTTHUMG00000158146.1 pseudo_consens +33764 chr19 ENSEMBL gene 32655016 32655308 293.0 - 0 ENSG00000242436.3 misc_RNA RN7SL789P 3 +33765 chr19 HAVANA gene 32666298 32673210 573.0 + 0 ENSG00000267557.1 antisense AC008474.1 2 OTTHUMG00000180226.1 +33766 chr19 HAVANA gene 32597007 32676597 7855.0 - 0 ENSG00000105186.15 protein_coding ANKRD27 1 OTTHUMG00000180225.9 ncRNA_host +33767 chr19 HAVANA gene 32675407 32678300 2894.0 + 0 ENSG00000186326.3 protein_coding RGS9BP 2 OTTHUMG00000180227.1 +33768 chr19 HAVANA gene 32687089 32691750 568.0 - 0 ENSG00000267475.1 lincRNA AC008736.1 2 OTTHUMG00000180421.1 +33769 chr19 HAVANA gene 32691961 32713796 2967.0 + 0 ENSG00000213965.3 protein_coding NUDT19 1 OTTHUMG00000180228.3 +33770 chr19 HAVANA gene 32718298 32719595 516.0 - 0 ENSG00000267567.1 lincRNA AC008736.2 2 OTTHUMG00000180422.1 +33771 chr19 HAVANA gene 32824142 32824505 364.0 - 0 ENSG00000267245.1 processed_pseudogene AC008805.1 1 OTTHUMG00000182113.1 pseudo_consens +33772 chr19 HAVANA gene 32719753 32829580 7011.0 + 0 ENSG00000173809.18 protein_coding TDRD12 2 OTTHUMG00000177230.8 +33773 chr19 HAVANA gene 32831295 32833168 435.0 + 0 ENSG00000267555.1 antisense AC008805.2 2 OTTHUMG00000180288.1 +33774 chr19 ENSEMBL gene 32862800 32863092 293.0 - 0 ENSG00000201967.1 misc_RNA RN7SKP22 3 +33775 chr19 HAVANA gene 32830509 32869766 2597.0 - 0 ENSG00000021488.12 protein_coding SLC7A9 2 OTTHUMG00000180287.4 ncRNA_host +33776 chr19 HAVANA gene 32963499 32963865 367.0 + 0 ENSG00000239988.1 processed_pseudogene RPL31P60 1 OTTHUMG00000182178.1 pseudo_consens +33777 chr19 HAVANA gene 32875925 32971991 9233.0 - 0 ENSG00000121289.17 protein_coding CEP89 2 OTTHUMG00000180424.6 +33778 chr19 HAVANA gene 32972209 32978222 2370.0 + 0 ENSG00000131944.9 protein_coding FAAP24 1 OTTHUMG00000180339.3 +33779 chr19 HAVANA gene 33051515 33051701 187.0 + 0 ENSG00000267611.1 processed_pseudogene AC008521.1 1 OTTHUMG00000182115.1 pseudo_consens +33780 chr19 HAVANA gene 32978593 33064888 4804.0 - 0 ENSG00000131941.7 protein_coding RHPN2 2 OTTHUMG00000180340.2 +33781 chr19 HAVANA gene 33067175 33067433 259.0 + 0 ENSG00000267725.1 processed_pseudogene AC008521.2 2 OTTHUMG00000182179.1 +33782 chr19 HAVANA gene 33080880 33130542 4488.0 + 0 ENSG00000076650.6 protein_coding GPATCH1 2 OTTHUMG00000180341.4 +33783 chr19 HAVANA gene 33132090 33175795 1841.0 + 0 ENSG00000166359.10 protein_coding WDR88 2 OTTHUMG00000180342.3 +33784 chr19 HAVANA gene 33178056 33178651 375.0 + 0 ENSG00000267054.1 sense_intronic AC008738.1 2 OTTHUMG00000180546.1 overlapping_locus +33785 chr19 HAVANA gene 33207129 33207639 511.0 + 0 ENSG00000273420.1 3prime_overlapping_ncRNA AC008738.7 2 OTTHUMG00000186174.1 overlapping_locus +33786 chr19 HAVANA gene 33177603 33208867 5095.0 + 0 ENSG00000130881.13 protein_coding LRP3 2 OTTHUMG00000180343.8 overlapping_locus +33787 chr19 HAVANA gene 33217817 33221170 700.0 + 0 ENSG00000267714.1 antisense AC008738.4 2 OTTHUMG00000180345.1 +33788 chr19 HAVANA gene 33208664 33225850 3111.0 - 0 ENSG00000130876.11 protein_coding SLC7A10 2 OTTHUMG00000180344.3 +33789 chr19 HAVANA gene 33283978 33285739 569.0 - 0 ENSG00000270212.1 lincRNA AC008738.6 2 OTTHUMG00000184169.1 +33790 chr19 HAVANA gene 33299934 33301168 659.0 + 0 ENSG00000267580.1 antisense AC008738.3 2 OTTHUMG00000180346.1 +33791 chr19 HAVANA gene 33301279 33301940 482.0 + 0 ENSG00000267727.1 antisense AC008738.5 2 OTTHUMG00000180733.1 +33792 chr19 HAVANA gene 33299934 33302564 2631.0 - 0 ENSG00000245848.2 protein_coding CEBPA 2 OTTHUMG00000161461.1 +33793 chr19 HAVANA gene 33302857 33305054 2198.0 + 0 ENSG00000267296.2 antisense CEBPA-DT 2 OTTHUMG00000180429.2 overlapping_locus +33794 chr19 HAVANA gene 33305036 33309387 404.0 + 0 ENSG00000267130.1 lincRNA AC008738.2 2 OTTHUMG00000180430.1 overlapping_locus +33795 chr19 HAVANA gene 33340686 33341984 803.0 + 0 ENSG00000243864.1 processed_pseudogene RPS3AP50 1 OTTHUMG00000158153.2 pseudo_consens +33796 chr19 HAVANA gene 33360497 33361448 952.0 - 0 ENSG00000266899.2 processed_pseudogene AKR1B1P7 1 OTTHUMG00000182176.2 pseudo_consens +33797 chr19 HAVANA gene 33373330 33382686 4411.0 + 0 ENSG00000153879.8 protein_coding CEBPG 2 OTTHUMG00000180469.3 +33798 chr19 HAVANA gene 33386950 33521794 4157.0 - 0 ENSG00000124299.13 protein_coding PEPD 1 OTTHUMG00000180470.11 +33799 chr19 HAVANA gene 33555568 33557470 1389.0 + 0 ENSG00000266985.1 lincRNA AC010485.1 2 OTTHUMG00000180471.1 +33800 chr19 HAVANA gene 33589206 33589688 483.0 - 0 ENSG00000232429.3 processed_pseudogene RPL21P131 1 OTTHUMG00000158155.1 pseudo_consens +33801 chr19 HAVANA gene 33621955 33773509 3052.0 + 0 ENSG00000124302.12 protein_coding CHST8 2 OTTHUMG00000180472.6 +33802 chr19 HAVANA gene 33795933 33815763 6388.0 + 0 ENSG00000153885.14 protein_coding KCTD15 2 OTTHUMG00000180475.5 +33803 chr19 HAVANA gene 33906352 33908391 2040.0 + 0 ENSG00000277013.1 lincRNA AC008556.1 2 OTTHUMG00000175767.1 +33804 chr19 ENSEMBL gene 33927364 33927625 262.0 - 0 ENSG00000240626.3 misc_RNA RN7SL150P 3 +33805 chr19 HAVANA gene 34021659 34021895 237.0 + 0 ENSG00000239253.1 processed_pseudogene RPS4XP23 1 OTTHUMG00000158173.1 pseudo_consens +33806 chr19 HAVANA gene 34022656 34023427 772.0 - 0 ENSG00000249987.1 processed_pseudogene RPS4XP20 1 OTTHUMG00000184237.1 pseudo_consens +33807 chr19 HAVANA gene 34092561 34093310 750.0 - 0 ENSG00000186008.7 processed_pseudogene RPS4XP21 1 OTTHUMG00000158165.2 pseudo_consens +33808 chr19 HAVANA gene 34126973 34127423 451.0 + 0 ENSG00000270849.1 processed_pseudogene CHCHD2P3 1 OTTHUMG00000184270.2 pseudo_consens +33809 chr19 HAVANA gene 34172504 34229515 4748.0 + 0 ENSG00000257103.8 protein_coding LSM14A 1 OTTHUMG00000180491.7 +33810 chr19 HAVANA gene 34296277 34296592 316.0 - 0 ENSG00000257074.3 processed_pseudogene RPL29P33 1 OTTHUMG00000158175.2 pseudo_consens +33811 chr19 HAVANA gene 34254537 34355586 7459.0 + 0 ENSG00000166398.12 protein_coding KIAA0355 2 OTTHUMG00000180505.7 +33812 chr19 HAVANA gene 34348356 34359412 585.0 - 0 ENSG00000267219.1 antisense AC010504.1 2 OTTHUMG00000180506.1 +33813 chr19 HAVANA gene 34359480 34402413 10680.0 + 0 ENSG00000105220.15 protein_coding GPI 2 OTTHUMG00000182087.10 overlapping_locus +33814 chr19 HAVANA gene 34396315 34409364 974.0 + 0 ENSG00000266953.6 protein_coding AC092073.1 1 OTTHUMG00000182250.3 overlapping_locus +33815 chr19 ENSEMBL gene 34421988 34422311 324.0 - 0 ENSG00000264317.2 misc_RNA RN7SL154P 3 +33816 chr19 HAVANA gene 34404384 34426168 1431.0 + 0 ENSG00000126249.7 protein_coding PDCD2L 1 OTTHUMG00000182089.3 overlapping_locus +33817 chr19 HAVANA gene 34426112 34428273 442.0 - 0 ENSG00000267024.1 antisense AC008747.1 2 OTTHUMG00000182117.1 +33818 chr19 HAVANA gene 34428352 34471251 4815.0 + 0 ENSG00000126261.12 protein_coding UBA2 2 OTTHUMG00000182090.7 +33819 chr19 HAVANA gene 34481638 34512304 13733.0 + 0 ENSG00000142279.12 protein_coding WTIP 2 OTTHUMG00000182099.4 +33820 chr19 HAVANA gene 34533427 34534084 356.0 - 0 ENSG00000239210.2 processed_pseudogene RPS26P55 1 OTTHUMG00000185799.1 pseudo_consens +33821 chr19 HAVANA gene 34542462 34545395 1707.0 - 0 ENSG00000248830.1 unprocessed_pseudogene ZNF807 2 OTTHUMG00000158178.2 +33822 chr19 HAVANA gene 34576733 34577701 616.0 - 0 ENSG00000268751.1 lincRNA SCGB1B2P 2 OTTHUMG00000182921.1 +33823 chr19 HAVANA gene 34634844 34635717 874.0 + 0 ENSG00000271049.1 processed_pseudogene AC020910.3 2 OTTHUMG00000184584.1 +33824 chr19 ENSEMBL gene 34637696 34637781 86.0 - 0 ENSG00000252230.1 snoRNA RF00611 3 +33825 chr19 HAVANA gene 34638122 34640689 413.0 - 0 ENSG00000268683.1 sense_intronic AC020910.1 2 OTTHUMG00000182923.1 overlapping_locus +33826 chr19 HAVANA gene 34645662 34646070 409.0 + 0 ENSG00000269811.2 processed_pseudogene SCGB2B3P 2 OTTHUMG00000184882.1 overlapping_locus +33827 chr19 HAVANA gene 34645380 34646838 1459.0 + 0 ENSG00000279971.1 TEC AC020910.6 2 OTTHUMG00000182924.1 overlapping_locus +33828 chr19 HAVANA gene 34593329 34675699 2990.0 - 0 ENSG00000205209.7 protein_coding SCGB2B2 2 OTTHUMG00000182463.2 ncRNA_host,overlapping_locus +33829 chr19 HAVANA gene 34675717 34677581 1865.0 - 0 ENSG00000279329.1 TEC AC020910.5 2 OTTHUMG00000184883.2 +33830 chr19 HAVANA gene 34677639 34686397 5032.0 + 0 ENSG00000089335.20 protein_coding ZNF302 1 OTTHUMG00000163329.7 +33831 chr19 HAVANA gene 34733298 34733837 540.0 - 0 ENSG00000274104.1 lincRNA AC020910.4 2 OTTHUMG00000186722.1 +33832 chr19 HAVANA gene 34734155 34745378 6266.0 + 0 ENSG00000197841.14 protein_coding ZNF181 1 OTTHUMG00000157508.7 +33833 chr19 HAVANA gene 34758076 34773229 6796.0 - 0 ENSG00000153896.17 protein_coding ZNF599 2 OTTHUMG00000182346.3 +33834 chr19 HAVANA gene 34779412 34780021 610.0 - 0 ENSG00000270281.1 processed_pseudogene AC020910.2 2 OTTHUMG00000185143.1 +33835 chr19 HAVANA gene 34811589 34814345 2757.0 - 0 ENSG00000261754.2 lincRNA AC008555.1 2 OTTHUMG00000175768.2 overlapping_locus +33836 chr19 HAVANA gene 34825414 34825996 583.0 + 0 ENSG00000271666.1 processed_pseudogene AC008555.7 2 OTTHUMG00000184606.1 +33837 chr19 HAVANA gene 34788582 34832869 2266.0 - 0 ENSG00000267767.2 lincRNA LINC01801 2 OTTHUMG00000182347.2 overlapping_locus +33838 chr19 HAVANA gene 34837889 34855304 6828.0 + 0 ENSG00000269086.2 lincRNA AC008555.2 2 OTTHUMG00000182958.2 +33839 chr19 HAVANA gene 34849278 34860576 842.0 - 0 ENSG00000271109.1 lincRNA AC008555.5 2 OTTHUMG00000185144.1 +33840 chr19 HAVANA gene 34866352 34866919 568.0 + 0 ENSG00000270624.1 processed_pseudogene AC008555.4 2 OTTHUMG00000185147.1 +33841 chr19 HAVANA gene 34892029 34898943 471.0 - 0 ENSG00000271649.1 lincRNA LINC00904 2 OTTHUMG00000185148.1 +33842 chr19 HAVANA gene 34902202 34904195 442.0 - 0 ENSG00000270544.1 lincRNA AC008555.3 2 OTTHUMG00000185149.2 +33843 chr19 HAVANA gene 34904392 34905057 458.0 - 0 ENSG00000271171.1 lincRNA AC008555.6 2 OTTHUMG00000185150.1 +33844 chr19 HAVANA gene 34905315 34908188 1657.0 + 0 ENSG00000269037.1 lincRNA LINC01838 2 OTTHUMG00000182959.1 +33845 chr19 HAVANA gene 34923299 34926812 625.0 - 0 ENSG00000270876.1 lincRNA ZNF30-AS1 2 OTTHUMG00000184607.2 +33846 chr19 HAVANA gene 34926903 34945170 2745.0 + 0 ENSG00000168661.14 protein_coding ZNF30 2 OTTHUMG00000182960.3 +33847 chr19 HAVANA gene 34949038 34951205 2168.0 - 0 ENSG00000280106.1 TEC AC008555.8 2 OTTHUMG00000175770.1 +33848 chr19 HAVANA gene 34956354 34964049 4234.0 - 0 ENSG00000180884.9 protein_coding ZNF792 2 OTTHUMG00000150339.2 +33849 chr19 HAVANA gene 34998233 35000170 565.0 - 0 ENSG00000269303.1 antisense AC020907.3 2 OTTHUMG00000182471.1 +33850 chr19 HAVANA gene 35014961 35025335 526.0 - 0 ENSG00000271032.1 antisense AC020907.4 2 OTTHUMG00000185158.1 +33851 chr19 HAVANA gene 34994784 35026471 5942.0 + 0 ENSG00000089351.14 protein_coding GRAMD1A 1 OTTHUMG00000182464.5 +33852 chr19 HAVANA gene 35030466 35040449 7993.0 + 0 ENSG00000105711.11 protein_coding SCN1B 2 OTTHUMG00000182472.4 +33853 chr19 HAVANA gene 35040506 35066571 3380.0 + 0 ENSG00000105707.13 protein_coding HPN 1 OTTHUMG00000182474.3 +33854 chr19 HAVANA gene 35059059 35106304 1124.0 - 0 ENSG00000227392.1 antisense HPN-AS1 2 OTTHUMG00000182475.2 +33855 chr19 HAVANA gene 35090930 35113664 3099.0 + 0 ENSG00000179066.8 lincRNA AC020907.1 2 OTTHUMG00000187103.2 overlapping_locus +33856 chr19 ENSEMBL gene 35122700 35122764 65.0 + 0 ENSG00000284065.1 miRNA MIR6887 3 +33857 chr19 HAVANA gene 35106510 35124297 1781.0 + 0 ENSG00000285526.1 protein_coding AC020907.6 2 OTTHUMG00000193383.1 ncRNA_host,overlapping_locus +33858 chr19 HAVANA gene 35115879 35124324 3334.0 + 0 ENSG00000089356.18 protein_coding FXYD3 2 OTTHUMG00000184625.2 ncRNA_host,overlapping_locus +33859 chr19 HAVANA gene 35137645 35139580 1936.0 - 0 ENSG00000279619.1 TEC AC020907.5 2 OTTHUMG00000182358.1 overlapping_locus +33860 chr19 HAVANA gene 35124513 35142451 4532.0 - 0 ENSG00000153902.13 protein_coding LGI4 2 OTTHUMG00000044558.4 overlapping_locus +33861 chr19 HAVANA gene 35138808 35143109 1926.0 + 0 ENSG00000266964.5 protein_coding FXYD1 2 OTTHUMG00000182359.2 overlapping_locus +33862 chr19 HAVANA gene 35138824 35151336 735.0 + 0 ENSG00000221857.7 processed_transcript AC020907.2 2 OTTHUMG00000182360.1 overlapping_locus +33863 chr19 HAVANA gene 35143250 35154301 1795.0 + 0 ENSG00000221946.7 protein_coding FXYD7 2 OTTHUMG00000182348.2 overlapping_locus +33864 chr19 HAVANA gene 35154730 35169883 2993.0 + 0 ENSG00000089327.14 protein_coding FXYD5 1 OTTHUMG00000048092.2 +33865 chr19 HAVANA gene 35224800 35228729 1184.0 - 0 ENSG00000177558.3 protein_coding FAM187B 2 OTTHUMG00000164450.1 +33866 chr19 HAVANA gene 35232291 35233003 713.0 - 0 ENSG00000262497.1 unprocessed_pseudogene FAM187B2P 2 OTTHUMG00000177833.1 +33867 chr19 HAVANA gene 35251440 35253639 618.0 - 0 ENSG00000271366.1 antisense AC002128.2 2 OTTHUMG00000185225.1 +33868 chr19 HAVANA gene 35262846 35264804 1016.0 + 0 ENSG00000268947.1 sense_intronic AC002128.1 2 OTTHUMG00000183181.1 overlapping_locus +33869 chr19 HAVANA gene 35248330 35267964 2916.0 + 0 ENSG00000105699.16 protein_coding LSR 1 OTTHUMG00000183142.6 overlapping_locus +33870 chr19 HAVANA gene 35268978 35279821 4952.0 + 0 ENSG00000105698.15 protein_coding USF2 2 OTTHUMG00000183182.5 +33871 chr19 HAVANA gene 35280716 35285143 3010.0 + 0 ENSG00000105697.8 protein_coding HAMP 2 OTTHUMG00000183295.1 +33872 chr19 HAVANA gene 35292125 35313804 2957.0 + 0 ENSG00000105695.14 protein_coding MAG 2 OTTHUMG00000183296.2 +33873 chr19 HAVANA gene 35330843 35331920 435.0 + 0 ENSG00000269553.1 sense_intronic U62631.1 2 OTTHUMG00000183299.1 overlapping_locus +33874 chr19 ENSEMBL gene 35345513 35345627 115.0 + 0 ENSG00000284034.1 miRNA MIR5196 3 +33875 chr19 HAVANA gene 35319261 35347355 6159.0 + 0 ENSG00000012124.16 protein_coding CD22 1 OTTHUMG00000183298.4 ncRNA_host,overlapping_locus +33876 chr19 HAVANA gene 35351552 35353862 2311.0 + 0 ENSG00000126266.3 protein_coding FFAR1 2 OTTHUMG00000188261.1 +33877 chr19 HAVANA gene 35358460 35360485 1855.0 + 0 ENSG00000185897.6 protein_coding FFAR3 2 OTTHUMG00000172514.2 +33878 chr19 HAVANA gene 35370929 35372962 1863.0 + 0 ENSG00000126251.6 protein_coding GPR42 2 OTTHUMG00000157124.3 +33879 chr19 HAVANA gene 35382172 35384052 1394.0 + 0 ENSG00000268222.1 processed_pseudogene EEF1A1P7 1 OTTHUMG00000183302.1 pseudo_consens +33880 chr19 HAVANA gene 35407770 35408493 420.0 + 0 ENSG00000283479.1 transcribed_unprocessed_pseudogene AC002511.3 2 OTTHUMG00000191781.1 overlapping_locus +33881 chr19 ENSEMBL gene 35414881 35415149 269.0 - 0 ENSG00000264400.2 misc_RNA RN7SL491P 3 +33882 chr19 HAVANA gene 35399511 35419385 4107.0 + 0 ENSG00000205786.8 lincRNA LINC01531 2 OTTHUMG00000048095.4 overlapping_locus +33883 chr19 HAVANA gene 35424062 35424652 450.0 - 0 ENSG00000233214.1 lincRNA AC002511.2 2 OTTHUMG00000048096.2 +33884 chr19 HAVANA gene 35432957 35434642 1000.0 - 0 ENSG00000232680.2 lincRNA AC002511.1 1 OTTHUMG00000048097.2 +33885 chr19 HAVANA gene 35443907 35451767 2149.0 + 0 ENSG00000126262.4 protein_coding FFAR2 2 OTTHUMG00000183303.3 +33886 chr19 HAVANA gene 35487324 35495558 661.0 - 0 ENSG00000188508.10 protein_coding KRTDAP 2 OTTHUMG00000155449.2 +33887 chr19 HAVANA gene 35497220 35513658 7444.0 - 0 ENSG00000161249.20 protein_coding DMKN 2 OTTHUMG00000048101.17 +33888 chr19 HAVANA gene 35523367 35528351 1986.0 - 0 ENSG00000189001.10 protein_coding SBSN 2 OTTHUMG00000048102.5 +33889 chr19 HAVANA gene 35533412 35545316 1519.0 + 0 ENSG00000105679.8 protein_coding GAPDHS 2 OTTHUMG00000182298.1 +33890 chr19 HAVANA gene 35540738 35546029 4859.0 - 0 ENSG00000236144.6 antisense TMEM147-AS1 1 OTTHUMG00000048104.3 +33891 chr19 HAVANA gene 35545595 35547526 1932.0 + 0 ENSG00000105677.11 protein_coding TMEM147 2 OTTHUMG00000048105.5 +33892 chr19 HAVANA gene 35550043 35563658 3889.0 - 0 ENSG00000105675.8 protein_coding ATP4A 2 OTTHUMG00000048106.5 +33893 chr19 HAVANA gene 35557956 35581954 494.0 + 0 ENSG00000283907.1 antisense AD000090.1 2 OTTHUMG00000191916.1 +33894 chr19 HAVANA gene 35586161 35587296 702.0 + 0 ENSG00000283758.2 protein_coding PMIS2 2 OTTHUMG00000191909.2 +33895 chr19 HAVANA gene 35597907 35601501 362.0 + 0 ENSG00000224910.1 lincRNA LINC01766 2 OTTHUMG00000048109.1 +33896 chr19 HAVANA gene 35608285 35612666 568.0 - 0 ENSG00000267626.1 lincRNA AC002115.1 2 OTTHUMG00000182062.1 +33897 chr19 HAVANA gene 35612744 35625349 5075.0 + 0 ENSG00000249115.8 protein_coding HAUS5 2 OTTHUMG00000048110.6 +33898 chr19 HAVANA gene 35629030 35637686 2206.0 + 0 ENSG00000126254.11 protein_coding RBM42 2 OTTHUMG00000182063.2 +33899 chr19 HAVANA gene 35641745 35644871 2152.0 + 0 ENSG00000105672.14 protein_coding ETV2 2 OTTHUMG00000150545.5 +33900 chr19 HAVANA gene 35648223 35658861 936.0 + 0 ENSG00000126267.9 protein_coding COX6B1 1 OTTHUMG00000048112.6 +33901 chr19 HAVANA gene 35667948 35673291 795.0 - 0 ENSG00000226510.1 antisense UPK1A-AS1 2 OTTHUMG00000048113.1 +33902 chr19 HAVANA gene 35666516 35678483 1366.0 + 0 ENSG00000105668.7 protein_coding UPK1A 2 OTTHUMG00000048115.3 +33903 chr19 HAVANA gene 35683778 35684201 424.0 - 0 ENSG00000267190.1 processed_pseudogene TYMSP2 1 OTTHUMG00000182260.1 pseudo_consens +33904 chr19 HAVANA gene 35704527 35717038 2770.0 + 0 ENSG00000011590.13 protein_coding ZBTB32 1 OTTHUMG00000048118.6 +33905 chr19 HAVANA gene 35718019 35738878 10279.0 + 0 ENSG00000272333.5 protein_coding KMT2B 2 OTTHUMG00000048119.8 +33906 chr19 HAVANA gene 35738801 35742453 2203.0 - 0 ENSG00000126246.9 protein_coding IGFLR1 1 OTTHUMG00000182064.6 overlapping_locus +33907 chr19 HAVANA gene 35739252 35745432 1925.0 - 0 ENSG00000267120.3 protein_coding AD000671.2 2 OTTHUMG00000182065.2 overlapping_locus +33908 chr19 HAVANA gene 35742464 35745445 2875.0 - 0 ENSG00000161265.14 protein_coding U2AF1L4 2 OTTHUMG00000182066.9 overlapping_locus +33909 chr19 HAVANA gene 35745114 35747519 1845.0 + 0 ENSG00000205155.7 protein_coding PSENEN 2 OTTHUMG00000182067.3 overlapping_locus +33910 chr19 HAVANA gene 35747057 35753415 2040.0 - 0 ENSG00000267439.1 antisense AD000671.3 2 OTTHUMG00000182069.3 +33911 chr19 HAVANA gene 35748361 35754519 2820.0 + 0 ENSG00000267796.7 protein_coding LIN37 1 OTTHUMG00000182070.8 overlapping_locus +33912 chr19 HAVANA gene 35745678 35754519 1037.0 + 0 ENSG00000188223.9 protein_coding AD000671.1 2 OTTHUMG00000182068.4 overlapping_locus +33913 chr19 HAVANA gene 35754566 35755490 660.0 + 0 ENSG00000267328.1 antisense AC002398.2 2 OTTHUMG00000182297.1 +33914 chr19 HAVANA gene 35754569 35758079 1721.0 - 0 ENSG00000004776.12 protein_coding HSPB6 2 OTTHUMG00000048122.4 +33915 chr19 HAVANA gene 35769144 35771028 427.0 - 0 ENSG00000267049.1 antisense AC002398.1 2 OTTHUMG00000182373.1 +33916 chr19 HAVANA gene 35758143 35771028 6327.0 + 0 ENSG00000167595.15 protein_coding PROSER3 2 OTTHUMG00000168103.10 +33917 chr19 HAVANA gene 35774532 35788822 5260.0 + 0 ENSG00000004777.18 protein_coding ARHGAP33 1 OTTHUMG00000182071.4 +33918 chr19 HAVANA gene 35785697 35797902 4415.0 - 0 ENSG00000225872.3 transcribed_unprocessed_pseudogene LINC01529 2 OTTHUMG00000048120.3 +33919 chr19 HAVANA gene 35799988 35813299 2731.0 - 0 ENSG00000250799.9 protein_coding PRODH2 1 OTTHUMG00000180688.5 +33920 chr19 HAVANA gene 35855861 35867109 3382.0 + 0 ENSG00000126259.19 protein_coding KIRREL2 2 OTTHUMG00000180691.7 +33921 chr19 HAVANA gene 35825964 35869287 5459.0 - 0 ENSG00000161270.19 protein_coding NPHS1 2 OTTHUMG00000180689.4 +33922 chr19 HAVANA gene 35867899 35879791 3656.0 + 0 ENSG00000105290.11 protein_coding APLP1 2 OTTHUMG00000180692.4 +33923 chr19 ENSEMBL gene 35881890 35882153 264.0 + 0 ENSG00000243968.2 misc_RNA RN7SL402P 3 +33924 chr19 HAVANA gene 35887653 35902303 3198.0 - 0 ENSG00000167604.14 protein_coding NFKBID 1 OTTHUMG00000180760.7 overlapping_locus +33925 chr19 HAVANA gene 35901561 35903855 2295.0 - 0 ENSG00000280194.1 TEC AD000864.1 2 OTTHUMG00000181738.1 overlapping_locus +33926 chr19 HAVANA gene 35902480 35904377 613.0 + 0 ENSG00000126264.9 protein_coding HCST 2 OTTHUMG00000048132.3 +33927 chr19 HAVANA gene 35904401 35908295 907.0 - 0 ENSG00000011600.11 protein_coding TYROBP 2 OTTHUMG00000181739.4 +33928 chr19 HAVANA gene 35935358 35945767 4044.0 + 0 ENSG00000126243.8 protein_coding LRFN3 2 OTTHUMG00000181740.2 +33929 chr19 HAVANA gene 35957121 35957382 262.0 - 0 ENSG00000267113.1 processed_pseudogene AF038458.1 1 OTTHUMG00000181743.1 pseudo_consens +33930 chr19 HAVANA gene 35947115 35959192 500.0 + 0 ENSG00000267786.1 lincRNA AF038458.3 2 OTTHUMG00000181741.1 +33931 chr19 HAVANA gene 35960512 35964063 600.0 + 0 ENSG00000267388.1 lincRNA AF038458.2 2 OTTHUMG00000181744.1 +33932 chr19 HAVANA gene 35995199 35996315 1117.0 + 0 ENSG00000205138.3 protein_coding SDHAF1 2 OTTHUMG00000181745.2 +33933 chr19 HAVANA gene 36003299 36008793 2536.0 - 0 ENSG00000181392.15 protein_coding SYNE4 1 OTTHUMG00000048135.7 overlapping_locus +33934 chr19 HAVANA gene 36008638 36014235 1130.0 - 0 ENSG00000248101.2 processed_transcript AC002116.1 2 OTTHUMG00000181895.1 overlapping_locus +33935 chr19 HAVANA gene 36009120 36014239 4293.0 - 0 ENSG00000239382.10 protein_coding ALKBH6 2 OTTHUMG00000048137.11 overlapping_locus +33936 chr19 HAVANA gene 36014660 36033343 3772.0 - 0 ENSG00000105270.14 protein_coding CLIP3 2 OTTHUMG00000181747.3 +33937 chr19 HAVANA gene 36014508 36045972 643.0 + 0 ENSG00000267698.1 antisense AC002116.2 2 OTTHUMG00000181746.1 +33938 chr19 HAVANA gene 36034985 36054762 1825.0 - 0 ENSG00000161277.10 protein_coding THAP8 1 OTTHUMG00000048138.5 +33939 chr19 HAVANA gene 36070239 36071070 832.0 + 0 ENSG00000280023.1 TEC AD000813.1 2 OTTHUMG00000186386.1 overlapping_locus +33940 chr19 HAVANA gene 36054881 36105106 9775.0 + 0 ENSG00000075702.17 protein_coding WDR62 2 OTTHUMG00000048139.8 overlapping_locus +33941 chr19 HAVANA gene 36111151 36113711 747.0 + 0 ENSG00000105261.7 protein_coding OVOL3 2 OTTHUMG00000181748.6 +33942 chr19 HAVANA gene 36114362 36115146 785.0 + 0 ENSG00000279504.1 TEC AD001527.2 2 OTTHUMG00000181750.1 overlapping_locus +33943 chr19 HAVANA gene 36113710 36115346 1269.0 - 0 ENSG00000105258.8 protein_coding POLR2I 2 OTTHUMG00000181749.1 +33944 chr19 HAVANA gene 36114289 36125947 3326.0 + 0 ENSG00000105254.11 protein_coding TBCB 1 OTTHUMG00000048143.8 overlapping_locus +33945 chr19 HAVANA gene 36144081 36148348 379.0 - 0 ENSG00000270760.1 antisense AD001527.1 2 OTTHUMG00000184249.1 +33946 chr19 HAVANA gene 36139575 36150353 3478.0 + 0 ENSG00000126247.10 protein_coding CAPNS1 2 OTTHUMG00000160811.9 +33947 chr19 HAVANA gene 36150922 36152869 1006.0 - 0 ENSG00000161281.10 protein_coding COX7A1 2 OTTHUMG00000048144.6 +33948 chr19 HAVANA gene 36173406 36173853 448.0 - 0 ENSG00000267005.1 processed_pseudogene AC002984.1 1 OTTHUMG00000181885.1 pseudo_consens +33949 chr19 ENSEMBL gene 36203347 36203459 113.0 - 0 ENSG00000200179.1 misc_RNA RF00019 3 +33950 chr19 HAVANA gene 36214602 36238774 4146.0 + 0 ENSG00000167635.11 protein_coding ZNF146 2 OTTHUMG00000180511.1 +33951 chr19 HAVANA gene 36182060 36246257 3953.0 - 0 ENSG00000196357.11 protein_coding ZNF565 2 OTTHUMG00000180508.2 ncRNA_host +33952 chr19 HAVANA gene 36304580 36312668 2674.0 + 0 ENSG00000267053.6 lincRNA AC012617.1 2 OTTHUMG00000180576.1 +33953 chr19 HAVANA gene 36313067 36331718 7201.0 - 0 ENSG00000232677.6 lincRNA LINC00665 1 OTTHUMG00000048145.3 +33954 chr19 HAVANA gene 36378028 36378832 566.0 + 0 ENSG00000266973.1 antisense AC092296.1 2 OTTHUMG00000180676.1 +33955 chr19 HAVANA gene 36334453 36379199 7817.0 - 0 ENSG00000142065.13 protein_coding ZFP14 1 OTTHUMG00000180675.2 +33956 chr19 HAVANA gene 36379351 36380912 249.0 - 0 ENSG00000267363.1 lincRNA AC092296.3 2 OTTHUMG00000180677.1 +33957 chr19 HAVANA gene 36383120 36418656 7506.0 - 0 ENSG00000181007.8 protein_coding ZFP82 2 OTTHUMG00000048146.3 +33958 chr19 HAVANA gene 36421536 36422534 999.0 + 0 ENSG00000267142.1 processed_pseudogene AC092296.2 1 OTTHUMG00000180678.1 pseudo_consens +33959 chr19 HAVANA gene 36445119 36489902 6481.0 - 0 ENSG00000186017.14 protein_coding ZNF566 1 OTTHUMG00000048148.4 +33960 chr19 HAVANA gene 36489649 36491040 1392.0 + 0 ENSG00000267309.1 antisense AC092295.2 2 OTTHUMG00000180679.1 +33961 chr19 HAVANA gene 36496916 36498159 1244.0 - 0 ENSG00000267091.1 processed_pseudogene CTBP2P7 1 OTTHUMG00000180713.1 pseudo_consens +33962 chr19 HAVANA gene 36510695 36528660 5952.0 - 0 ENSG00000254004.6 protein_coding ZNF260 2 OTTHUMG00000048155.3 +33963 chr19 HAVANA gene 36528318 36535235 434.0 + 0 ENSG00000228629.2 antisense AC092295.1 1 OTTHUMG00000048149.1 +33964 chr19 HAVANA gene 36573070 36594708 1868.0 + 0 ENSG00000233527.8 antisense ZNF529-AS1 2 OTTHUMG00000048152.3 +33965 chr19 HAVANA gene 36534774 36605276 8173.0 - 0 ENSG00000186020.12 protein_coding ZNF529 2 OTTHUMG00000180714.2 +33966 chr19 HAVANA gene 36604817 36634113 11318.0 + 0 ENSG00000161298.17 protein_coding ZNF382 1 OTTHUMG00000048153.6 +33967 chr19 HAVANA gene 36637192 36666853 4204.0 - 0 ENSG00000197808.11 protein_coding ZNF461 1 OTTHUMG00000180832.3 +33968 chr19 HAVANA gene 36668102 36669404 1303.0 + 0 ENSG00000276071.1 lincRNA AC074138.1 2 OTTHUMG00000186726.2 +33969 chr19 HAVANA gene 36685440 36687449 1138.0 - 0 ENSG00000225975.6 lincRNA LINC01534 1 OTTHUMG00000048158.2 +33970 chr19 HAVANA gene 36687612 36727701 4724.0 + 0 ENSG00000189042.13 protein_coding ZNF567 2 OTTHUMG00000180898.1 +33971 chr19 HAVANA gene 36714383 36772825 7850.0 - 0 ENSG00000267041.5 protein_coding ZNF850 2 OTTHUMG00000180899.1 +33972 chr19 HAVANA gene 36773712 36775908 2197.0 - 0 ENSG00000267353.1 lincRNA AC020928.2 2 OTTHUMG00000180902.1 +33973 chr19 HAVANA gene 36773153 36777078 2050.0 + 0 ENSG00000267260.1 lincRNA AC020928.1 1 OTTHUMG00000180901.1 +33974 chr19 HAVANA gene 36797518 36828115 1506.0 + 0 ENSG00000267254.5 antisense ZNF790-AS1 2 OTTHUMG00000180904.2 +33975 chr19 HAVANA gene 36817428 36850787 3851.0 - 0 ENSG00000197863.8 protein_coding ZNF790 2 OTTHUMG00000165616.4 +33976 chr19 ENSEMBL gene 36858227 36858329 103.0 - 0 ENSG00000206669.1 misc_RNA RF00019 3 +33977 chr19 HAVANA gene 36901742 36902117 376.0 + 0 ENSG00000243297.2 processed_pseudogene RPL31P61 1 OTTHUMG00000158179.2 pseudo_consens,overlapping_locus +33978 chr19 HAVANA gene 36850361 36913029 4738.0 + 0 ENSG00000251247.10 protein_coding ZNF345 2 OTTHUMG00000048162.4 overlapping_locus +33979 chr19 HAVANA gene 36888124 36916291 7742.0 - 0 ENSG00000185869.14 protein_coding ZNF829 2 OTTHUMG00000048161.3 +33980 chr19 HAVANA gene 36916329 36998700 9437.0 + 0 ENSG00000198453.12 protein_coding ZNF568 2 OTTHUMG00000048160.8 +33981 chr19 HAVANA gene 37024886 37025254 369.0 - 0 ENSG00000275547.1 unprocessed_pseudogene AC010632.3 2 OTTHUMG00000188008.1 +33982 chr19 HAVANA gene 37075113 37078605 572.0 - 0 ENSG00000267345.1 antisense AC010632.1 2 OTTHUMG00000181856.1 +33983 chr19 HAVANA gene 37091341 37092564 1224.0 + 0 ENSG00000267672.1 sense_intronic AC010632.2 2 OTTHUMG00000181794.1 overlapping_locus +33984 chr19 HAVANA gene 37007857 37130314 4023.0 + 0 ENSG00000197050.10 protein_coding ZNF420 1 OTTHUMG00000048168.6 overlapping_locus +33985 chr19 HAVANA gene 37128679 37141640 319.0 - 0 ENSG00000267437.1 antisense AC012309.2 2 OTTHUMG00000181862.2 overlapping_locus +33986 chr19 HAVANA gene 37106734 37172741 10758.0 - 0 ENSG00000196967.10 protein_coding ZNF585A 2 OTTHUMG00000181857.4 overlapping_locus +33987 chr19 HAVANA gene 37093019 37210512 1654.0 - 0 ENSG00000267360.6 protein_coding AC012309.1 2 OTTHUMG00000181859.2 overlapping_locus +33988 chr19 HAVANA gene 37181579 37218153 7538.0 - 0 ENSG00000245680.9 protein_coding ZNF585B 2 OTTHUMG00000048165.5 overlapping_locus +33989 chr19 HAVANA gene 37217926 37248738 8417.0 + 0 ENSG00000188283.11 protein_coding ZNF383 2 OTTHUMG00000181890.4 +33990 chr19 HAVANA gene 37251912 37265535 2187.0 + 0 ENSG00000226686.7 lincRNA LINC01535 1 OTTHUMG00000048167.2 +33991 chr19 HAVANA gene 37265939 37271518 2781.0 - 0 ENSG00000267605.5 lincRNA AC016590.1 2 OTTHUMG00000180577.3 +33992 chr19 HAVANA gene 37314868 37315620 753.0 - 0 ENSG00000276846.1 antisense AC016590.3 2 OTTHUMG00000186729.1 +33993 chr19 HAVANA gene 37337236 37337743 375.0 + 0 ENSG00000267682.1 sense_intronic AC016590.2 2 OTTHUMG00000181938.1 overlapping_locus +33994 chr19 HAVANA gene 37312837 37369365 7203.0 + 0 ENSG00000181666.17 protein_coding HKR1 1 OTTHUMG00000181937.7 overlapping_locus +33995 chr19 HAVANA gene 37371061 37393066 6436.0 + 0 ENSG00000189164.14 protein_coding ZNF527 1 OTTHUMG00000048173.3 +33996 chr19 HAVANA gene 37401404 37403846 2443.0 - 0 ENSG00000279936.1 TEC AC008806.1 2 OTTHUMG00000175771.1 +33997 chr19 HAVANA gene 37411155 37469275 5016.0 - 0 ENSG00000196437.10 protein_coding ZNF569 1 OTTHUMG00000048172.4 +33998 chr19 HAVANA gene 37467585 37488652 6246.0 + 0 ENSG00000171827.10 protein_coding ZNF570 2 OTTHUMG00000048176.4 +33999 chr19 HAVANA gene 37503906 37504465 560.0 - 0 ENSG00000267115.1 lincRNA AC022148.2 2 OTTHUMG00000181989.1 overlapping_locus +34000 chr19 HAVANA gene 37497159 37507046 1321.0 - 0 ENSG00000266916.5 antisense ZNF793-AS1 2 OTTHUMG00000181988.3 overlapping_locus +34001 chr19 HAVANA gene 37506939 37548762 12007.0 + 0 ENSG00000188227.12 protein_coding ZNF793 1 OTTHUMG00000182003.4 +34002 chr19 HAVANA gene 37545470 37549171 3267.0 - 0 ENSG00000180458.2 antisense AC022148.1 2 OTTHUMG00000182015.1 +34003 chr19 HAVANA gene 37548914 37587348 4560.0 + 0 ENSG00000267470.5 antisense ZNF571-AS1 2 OTTHUMG00000182052.2 overlapping_locus +34004 chr19 HAVANA gene 37554782 37594790 6206.0 - 0 ENSG00000180479.13 protein_coding ZNF571 1 OTTHUMG00000182016.3 +34005 chr19 HAVANA gene 37551406 37614097 4304.0 + 0 ENSG00000171817.16 protein_coding ZNF540 1 OTTHUMG00000182053.4 overlapping_locus +34006 chr19 HAVANA gene 37667751 37692322 3617.0 - 0 ENSG00000196381.10 protein_coding ZNF781 1 OTTHUMG00000182106.2 overlapping_locus +34007 chr19 HAVANA gene 37613749 37692337 7705.0 - 0 ENSG00000120784.16 protein_coding ZFP30 2 OTTHUMG00000048177.6 overlapping_locus +34008 chr19 HAVANA gene 37693280 37693564 285.0 - 0 ENSG00000267319.1 processed_pseudogene SELENOKP1 1 OTTHUMG00000182109.1 pseudo_consens,overlapping_locus +34009 chr19 HAVANA gene 37689865 37719188 785.0 - 0 ENSG00000267552.6 protein_coding AC093227.2 2 OTTHUMG00000182107.2 overlapping_locus +34010 chr19 HAVANA gene 37696363 37719790 4740.0 - 0 ENSG00000198182.12 protein_coding ZNF607 1 OTTHUMG00000182108.4 overlapping_locus +34011 chr19 HAVANA gene 37728586 37730643 1360.0 - 0 ENSG00000267152.1 lincRNA AC093227.1 2 OTTHUMG00000182110.1 +34012 chr19 HAVANA gene 37779686 37792865 1432.0 + 0 ENSG00000267422.1 transcribed_processed_pseudogene AC016582.2 1 OTTHUMG00000182154.1 pseudo_consens +34013 chr19 HAVANA gene 37735833 37817300 4689.0 - 0 ENSG00000189144.13 protein_coding ZNF573 1 OTTHUMG00000048183.4 +34014 chr19 HAVANA gene 37817359 37832160 6985.0 + 0 ENSG00000267640.6 transcribed_unprocessed_pseudogene AC016582.3 2 OTTHUMG00000182155.3 +34015 chr19 HAVANA gene 37823722 37855215 4990.0 - 0 ENSG00000225868.7 transcribed_unprocessed_pseudogene AC016582.1 2 OTTHUMG00000048186.3 +34016 chr19 HAVANA gene 37884823 37906677 9199.0 - 0 ENSG00000171804.10 protein_coding WDR87 2 OTTHUMG00000048187.5 +34017 chr19 HAVANA gene 37963853 37964790 607.0 + 0 ENSG00000268051.1 sense_intronic AC008395.1 2 OTTHUMG00000182399.1 overlapping_locus +34018 chr19 HAVANA gene 38108500 38109533 328.0 - 0 ENSG00000268764.1 antisense AC011465.1 2 OTTHUMG00000182400.1 +34019 chr19 HAVANA gene 38184376 38186265 1890.0 + 0 ENSG00000269653.1 sense_intronic AC011479.3 2 OTTHUMG00000182401.1 overlapping_locus +34020 chr19 ENSEMBL gene 38200234 38200532 299.0 + 0 ENSG00000275132.1 misc_RNA RN7SL663P 3 +34021 chr19 HAVANA gene 38199836 38200934 432.0 + 0 ENSG00000268499.1 sense_intronic AC011479.2 2 OTTHUMG00000182402.1 ncRNA_host,overlapping_locus +34022 chr19 HAVANA gene 37907228 38208372 10335.0 + 0 ENSG00000105738.10 protein_coding SIPA1L3 2 OTTHUMG00000073727.4 ncRNA_host,overlapping_locus +34023 chr19 HAVANA gene 38211006 38229714 4800.0 - 0 ENSG00000011332.19 protein_coding DPF1 1 OTTHUMG00000157164.4 +34024 chr19 HAVANA gene 38251237 38256591 1501.0 - 0 ENSG00000167641.10 protein_coding PPP1R14A 2 OTTHUMG00000181892.1 +34025 chr19 HAVANA gene 38244035 38292614 5199.0 + 0 ENSG00000167642.12 protein_coding SPINT2 1 OTTHUMG00000181891.3 overlapping_locus +34026 chr19 ENSEMBL gene 38294544 38294636 93.0 + 0 ENSG00000200209.1 misc_RNA RF00019 3 +34027 chr19 HAVANA gene 38289151 38304910 546.0 + 0 ENSG00000267748.4 protein_coding AC011479.1 2 OTTHUMG00000181893.3 ncRNA_host,overlapping_locus +34028 chr19 HAVANA gene 38304161 38305009 617.0 + 0 ENSG00000167644.11 protein_coding C19orf33 2 OTTHUMG00000181894.2 overlapping_locus +34029 chr19 HAVANA gene 38305104 38317273 3193.0 - 0 ENSG00000167645.16 protein_coding YIF1B 1 OTTHUMG00000182324.4 +34030 chr19 HAVANA gene 38319844 38332076 6169.0 + 0 ENSG00000099337.4 protein_coding KCNK6 2 OTTHUMG00000182325.2 +34031 chr19 HAVANA gene 38361795 38362484 472.0 - 0 ENSG00000266963.1 antisense AC005625.1 2 OTTHUMG00000182326.1 +34032 chr19 HAVANA gene 38335775 38370943 9190.0 + 0 ENSG00000099338.22 protein_coding CATSPERG 1 OTTHUMG00000153223.6 +34033 chr19 HAVANA gene 38374536 38383824 3105.0 + 0 ENSG00000099341.11 protein_coding PSMD8 1 OTTHUMG00000150691.5 +34034 chr19 HAVANA gene 38385522 38386759 297.0 + 0 ENSG00000267090.1 antisense AC005789.1 2 OTTHUMG00000182081.1 +34035 chr19 HAVANA gene 38384265 38388082 2447.0 - 0 ENSG00000179168.14 protein_coding GGN 1 OTTHUMG00000182080.3 +34036 chr19 HAVANA gene 38388421 38399587 5864.0 + 0 ENSG00000188766.12 protein_coding SPRED3 2 OTTHUMG00000182082.4 +34037 chr19 HAVANA gene 38403135 38409088 4598.0 + 0 ENSG00000130244.12 protein_coding FAM98C 2 OTTHUMG00000182084.2 +34038 chr19 HAVANA gene 38409051 38426305 4183.0 - 0 ENSG00000171777.15 protein_coding RASGRP4 2 OTTHUMG00000182327.3 +34039 chr19 HAVANA gene 38526954 38528555 570.0 - 0 ENSG00000269445.1 antisense AC067969.2 2 OTTHUMG00000182523.1 +34040 chr19 HAVANA gene 38535517 38537128 552.0 - 0 ENSG00000268055.1 antisense AC067969.1 2 OTTHUMG00000182524.1 +34041 chr19 HAVANA gene 38433699 38587564 15965.0 + 0 ENSG00000196218.12 protein_coding RYR1 1 OTTHUMG00000182403.4 +34042 chr19 HAVANA gene 38596346 38601694 516.0 + 0 ENSG00000267291.1 antisense AC008649.1 2 OTTHUMG00000180864.1 +34043 chr19 HAVANA gene 38587641 38618882 3953.0 - 0 ENSG00000104814.12 protein_coding MAP4K1 2 OTTHUMG00000180863.1 +34044 chr19 HAVANA gene 38619082 38636955 2798.0 + 0 ENSG00000178982.9 protein_coding EIF3K 1 OTTHUMG00000180865.4 +34045 chr19 HAVANA gene 38683873 38693606 242.0 - 0 ENSG00000267375.1 antisense AC008649.2 2 OTTHUMG00000182086.1 +34046 chr19 HAVANA gene 38647649 38731583 6098.0 + 0 ENSG00000130402.11 protein_coding ACTN4 1 OTTHUMG00000137382.3 +34047 chr19 HAVANA gene 38738284 38739863 1580.0 + 0 ENSG00000267892.1 antisense AC022144.1 2 OTTHUMG00000182526.1 +34048 chr19 HAVANA gene 38730187 38769904 5966.0 - 0 ENSG00000182472.8 protein_coding CAPN12 2 OTTHUMG00000182525.2 +34049 chr19 HAVANA gene 38770971 38773492 795.0 - 0 ENSG00000205076.4 protein_coding LGALS7 2 OTTHUMG00000182606.3 +34050 chr19 HAVANA gene 38789211 38791749 644.0 + 0 ENSG00000178934.4 protein_coding LGALS7B 2 OTTHUMG00000182607.1 +34051 chr19 ENSEMBL gene 38797002 38797109 108.0 - 0 ENSG00000207296.1 snRNA RNU6-140P 3 +34052 chr19 HAVANA gene 38801671 38813364 2645.0 - 0 ENSG00000171747.8 protein_coding LGALS4 2 OTTHUMG00000182608.2 +34053 chr19 HAVANA gene 38820166 38823223 566.0 + 0 ENSG00000268756.1 antisense AC104534.1 2 OTTHUMG00000182611.1 +34054 chr19 HAVANA gene 38815422 38832005 2467.0 - 0 ENSG00000104823.8 protein_coding ECH1 1 OTTHUMG00000182609.2 overlapping_locus +34055 chr19 HAVANA gene 38817471 38840178 963.0 - 0 ENSG00000268083.5 protein_coding AC008982.1 1 OTTHUMG00000182610.2 overlapping_locus +34056 chr19 HAVANA gene 38844729 38845499 493.0 - 0 ENSG00000269688.1 sense_intronic AC008982.2 2 OTTHUMG00000182613.1 overlapping_locus +34057 chr19 HAVANA gene 38836388 38852347 6821.0 - 0 ENSG00000104824.17 protein_coding HNRNPL 2 OTTHUMG00000182612.3 overlapping_locus +34058 chr19 HAVANA gene 38870159 38873763 504.0 + 0 ENSG00000269050.1 antisense AC011455.1 2 OTTHUMG00000182690.1 +34059 chr19 HAVANA gene 38867834 38878279 4201.0 - 0 ENSG00000187994.13 protein_coding RINL 2 OTTHUMG00000182299.5 +34060 chr19 HAVANA gene 38878555 38899862 6224.0 - 0 ENSG00000068903.19 protein_coding SIRT2 2 OTTHUMG00000150480.3 +34061 chr19 HAVANA gene 38899700 38908893 2324.0 + 0 ENSG00000104825.16 protein_coding NFKBIB 2 OTTHUMG00000177631.2 +34062 chr19 HAVANA gene 38908980 38912158 1057.0 - 0 ENSG00000262484.1 protein_coding CCER2 2 OTTHUMG00000177374.1 +34063 chr19 HAVANA gene 38915266 38930896 3231.0 - 0 ENSG00000104835.14 protein_coding SARS2 2 OTTHUMG00000182691.1 overlapping_locus +34064 chr19 HAVANA gene 38930548 38933162 2144.0 + 0 ENSG00000128626.11 protein_coding MRPS12 2 OTTHUMG00000182692.2 +34065 chr19 HAVANA gene 38935297 38938632 3336.0 - 0 ENSG00000269486.2 lincRNA ERVK9-11 2 OTTHUMG00000182717.2 overlapping_locus +34066 chr19 HAVANA gene 38915404 38949855 1967.0 - 0 ENSG00000269547.1 protein_coding AC011455.2 2 OTTHUMG00000182716.1 overlapping_locus +34067 chr19 HAVANA gene 38941401 38975910 4960.0 - 0 ENSG00000269190.5 protein_coding FBXO17 2 OTTHUMG00000182718.3 overlapping_locus +34068 chr19 HAVANA gene 39030436 39031323 797.0 + 0 ENSG00000267992.1 antisense AC010605.1 2 OTTHUMG00000182720.1 +34069 chr19 HAVANA gene 38990714 39032785 2833.0 - 0 ENSG00000161243.8 protein_coding FBXO27 2 OTTHUMG00000182719.2 +34070 chr19 HAVANA gene 39083913 39111493 3107.0 + 0 ENSG00000183760.10 protein_coding ACP7 1 OTTHUMG00000182799.1 +34071 chr19 HAVANA gene 39134882 39136463 365.0 - 0 ENSG00000269172.1 antisense AC011443.1 2 OTTHUMG00000182801.1 +34072 chr19 HAVANA gene 39125770 39182816 7115.0 + 0 ENSG00000130669.17 protein_coding PAK4 2 OTTHUMG00000182800.2 +34073 chr19 HAVANA gene 39196961 39201884 1978.0 + 0 ENSG00000188505.4 protein_coding NCCRP1 2 OTTHUMG00000182802.1 +34074 chr19 HAVANA gene 39202831 39204266 573.0 - 0 ENSG00000179751.6 protein_coding SYCN 2 OTTHUMG00000182803.1 +34075 chr19 HAVANA gene 39236433 39237293 501.0 - 0 ENSG00000268510.1 unprocessed_pseudogene IFNL3P1 2 OTTHUMG00000182804.1 +34076 chr19 HAVANA gene 39243553 39245129 771.0 - 0 ENSG00000197110.8 protein_coding IFNL3 2 OTTHUMG00000182805.1 +34077 chr19 HAVANA gene 39246314 39248856 1836.0 - 0 ENSG00000272395.7 polymorphic_pseudogene IFNL4 2 OTTHUMG00000185299.3 +34078 chr19 HAVANA gene 39254916 39255269 354.0 - 0 ENSG00000213926.3 processed_pseudogene MSRB1P1 1 OTTHUMG00000168117.1 pseudo_consens +34079 chr19 HAVANA gene 39264382 39265817 540.0 + 0 ENSG00000272311.1 unprocessed_pseudogene IFNL4P1 2 OTTHUMG00000185300.2 +34080 chr19 HAVANA gene 39268514 39270092 737.0 + 0 ENSG00000183709.7 protein_coding IFNL2 2 OTTHUMG00000182806.1 +34081 chr19 HAVANA gene 39296325 39298673 857.0 + 0 ENSG00000182393.2 protein_coding IFNL1 2 OTTHUMG00000182807.1 +34082 chr19 HAVANA gene 39306568 39315336 3381.0 - 0 ENSG00000128011.4 protein_coding LRFN1 2 OTTHUMG00000182808.1 overlapping_locus +34083 chr19 HAVANA gene 39314651 39320858 877.0 - 0 ENSG00000268262.1 sense_overlapping AC011445.1 2 OTTHUMG00000182810.1 overlapping_locus +34084 chr19 HAVANA gene 39341773 39341945 173.0 - 0 ENSG00000269246.1 lincRNA AC011445.2 2 OTTHUMG00000183224.1 overlapping_locus +34085 chr19 HAVANA gene 39328353 39342372 1490.0 - 0 ENSG00000130755.12 protein_coding GMFG 2 OTTHUMG00000182811.2 overlapping_locus +34086 chr19 ENSEMBL gene 39369153 39369448 296.0 + 0 ENSG00000241983.3 misc_RNA RN7SL566P 3 +34087 chr19 HAVANA gene 39342396 39385710 8057.0 + 0 ENSG00000179134.15 protein_coding SAMD4B 1 OTTHUMG00000182967.2 ncRNA_host +34088 chr19 HAVANA gene 39385852 39391195 2668.0 - 0 ENSG00000006712.14 protein_coding PAF1 2 OTTHUMG00000182968.2 +34089 chr19 HAVANA gene 39391303 39400637 3835.0 + 0 ENSG00000063322.13 protein_coding MED29 1 OTTHUMG00000182969.3 +34090 chr19 HAVANA gene 39406813 39409412 2010.0 + 0 ENSG00000128016.5 protein_coding ZFP36 1 OTTHUMG00000182970.2 +34091 chr19 ENSEMBL gene 39409623 39409678 56.0 - 0 ENSG00000266559.1 miRNA MIR4530 3 +34092 chr19 HAVANA gene 39412585 39428415 9200.0 + 0 ENSG00000090924.14 protein_coding PLEKHG2 1 OTTHUMG00000152570.7 +34093 chr19 HAVANA gene 39433207 39435948 2603.0 - 0 ENSG00000105193.8 protein_coding RPS16 2 OTTHUMG00000182972.2 +34094 chr19 HAVANA gene 39436156 39476670 8568.0 + 0 ENSG00000196235.13 protein_coding SUPT5H 2 OTTHUMG00000182973.4 +34095 chr19 HAVANA gene 39480412 39493785 6911.0 + 0 ENSG00000105197.10 protein_coding TIMM50 2 OTTHUMG00000183066.4 +34096 chr19 HAVANA gene 39498895 39508481 2618.0 + 0 ENSG00000090932.10 protein_coding DLL3 2 OTTHUMG00000183067.2 +34097 chr19 HAVANA gene 39515113 39520686 1731.0 + 0 ENSG00000186838.13 protein_coding SELENOV 2 OTTHUMG00000166446.2 +34098 chr19 HAVANA gene 39530990 39532854 1865.0 - 0 ENSG00000176401.5 protein_coding EID2B 2 OTTHUMG00000183068.1 retrogene +34099 chr19 HAVANA gene 39532412 39534422 647.0 + 0 ENSG00000269792.1 antisense AC011500.3 2 OTTHUMG00000183069.1 +34100 chr19 HAVANA gene 39534463 39535021 559.0 + 0 ENSG00000269584.1 processed_pseudogene TDGF1P7 1 OTTHUMG00000183070.1 pseudo_consens +34101 chr19 HAVANA gene 39538705 39540333 1629.0 - 0 ENSG00000176396.10 protein_coding EID2 2 OTTHUMG00000074073.3 retrogene +34102 chr19 HAVANA gene 39553034 39555356 440.0 + 0 ENSG00000269588.1 unprocessed_pseudogene AC011500.2 2 OTTHUMG00000183071.1 +34103 chr19 HAVANA gene 39584042 39586489 469.0 + 0 ENSG00000269188.1 unprocessed_pseudogene AC011500.1 2 OTTHUMG00000183072.1 +34104 chr19 HAVANA gene 39588955 39589125 171.0 + 0 ENSG00000244253.1 processed_pseudogene RPS29P24 1 OTTHUMG00000158191.1 pseudo_consens +34105 chr19 HAVANA gene 39590981 39591151 171.0 + 0 ENSG00000243581.1 processed_pseudogene RPS29P25 1 OTTHUMG00000158190.1 pseudo_consens +34106 chr19 HAVANA gene 39597832 39598002 171.0 + 0 ENSG00000239320.1 processed_pseudogene RPS29P26 1 OTTHUMG00000158189.1 pseudo_consens +34107 chr19 HAVANA gene 39602501 39607476 711.0 + 0 ENSG00000105198.10 protein_coding LGALS13 2 OTTHUMG00000183073.2 +34108 chr19 HAVANA gene 39631300 39631446 147.0 - 0 ENSG00000269519.1 processed_pseudogene AC005176.2 1 OTTHUMG00000183080.1 pseudo_consens +34109 chr19 HAVANA gene 39638685 39642401 1835.0 + 0 ENSG00000268153.5 transcribed_unprocessed_pseudogene AC005176.1 2 OTTHUMG00000183081.1 +34110 chr19 HAVANA gene 39644502 39644612 111.0 + 0 ENSG00000268243.1 processed_pseudogene RPS29P30 1 OTTHUMG00000183082.1 pseudo_consens +34111 chr19 HAVANA gene 39655894 39660647 679.0 + 0 ENSG00000249861.3 protein_coding LGALS16 2 OTTHUMG00000183083.2 +34112 chr19 HAVANA gene 39679374 39686373 2570.0 + 0 ENSG00000226025.9 transcribed_unprocessed_pseudogene LGALS17A 2 OTTHUMG00000141285.2 overlapping_locus +34113 chr19 HAVANA gene 39685244 39694577 289.0 + 0 ENSG00000269460.1 lincRNA AC005515.1 2 OTTHUMG00000183084.1 overlapping_locus +34114 chr19 HAVANA gene 39693925 39696258 363.0 + 0 ENSG00000268088.1 transcribed_unprocessed_pseudogene AC093063.1 2 OTTHUMG00000183085.1 overlapping_locus +34115 chr19 HAVANA gene 39697904 39698073 170.0 + 0 ENSG00000240320.1 processed_pseudogene RPS29P27 1 OTTHUMG00000158194.1 pseudo_consens +34116 chr19 HAVANA gene 39704306 39709444 1079.0 + 0 ENSG00000006659.12 protein_coding LGALS14 2 OTTHUMG00000183143.2 +34117 chr19 HAVANA gene 39726030 39726775 264.0 - 0 ENSG00000278813.1 unprocessed_pseudogene AC006133.1 2 OTTHUMG00000188009.1 +34118 chr19 HAVANA gene 39731250 39738028 635.0 - 0 ENSG00000105205.6 protein_coding CLC 2 OTTHUMG00000183144.1 +34119 chr19 HAVANA gene 39776595 39786167 748.0 + 0 ENSG00000213921.7 protein_coding LEUTX 1 OTTHUMG00000170877.5 +34120 chr19 HAVANA gene 39812972 39813555 584.0 - 0 ENSG00000276445.1 lincRNA AC005393.1 2 OTTHUMG00000186731.2 +34121 chr19 ENSEMBL gene 39829716 39829802 87.0 - 0 ENSG00000277759.1 miRNA MIR6719 3 +34122 chr19 HAVANA gene 39825350 39834201 3192.0 - 0 ENSG00000105204.13 protein_coding DYRK1B 2 OTTHUMG00000182584.5 ncRNA_host +34123 chr19 HAVANA gene 39834458 39846414 2173.0 - 0 ENSG00000105202.8 protein_coding FBL 2 OTTHUMG00000182581.7 +34124 chr19 HAVANA gene 39863323 39934626 12961.0 - 0 ENSG00000275395.5 protein_coding FCGBP 2 OTTHUMG00000182580.5 fragmented_locus,reference_genome_error +34125 chr19 HAVANA gene 39943239 39943680 442.0 - 0 ENSG00000187534.6 processed_pseudogene PRR13P5 1 OTTHUMG00000182585.1 pseudo_consens +34126 chr19 HAVANA gene 39971005 39981441 2387.0 + 0 ENSG00000013275.7 protein_coding PSMC4 2 OTTHUMG00000182577.2 +34127 chr19 HAVANA gene 39984134 40021041 9007.0 + 0 ENSG00000187187.13 protein_coding ZNF546 2 OTTHUMG00000182578.8 +34128 chr19 HAVANA gene 40023384 40025502 2039.0 - 0 ENSG00000269069.1 processed_pseudogene AC007842.1 1 OTTHUMG00000182630.1 pseudo_consens +34129 chr19 HAVANA gene 40028260 40056209 9217.0 - 0 ENSG00000128000.15 protein_coding ZNF780B 1 OTTHUMG00000155118.4 overlapping_locus +34130 chr19 HAVANA gene 40048757 40090925 461.0 - 0 ENSG00000269749.1 processed_transcript AC005614.2 2 OTTHUMG00000182662.2 overlapping_locus +34131 chr19 HAVANA gene 40069152 40090938 7972.0 - 0 ENSG00000197782.14 protein_coding ZNF780A 2 OTTHUMG00000155119.5 overlapping_locus +34132 chr19 HAVANA gene 40090754 40094406 3653.0 + 0 ENSG00000269296.1 antisense AC005614.1 2 OTTHUMG00000182660.1 +34133 chr19 HAVANA gene 40121311 40122168 858.0 - 0 ENSG00000230086.1 unitary_pseudogene VN1R96P 2 OTTHUMG00000154501.1 +34134 chr19 HAVANA gene 40191744 40215575 4566.0 + 0 ENSG00000130758.7 protein_coding MAP3K10 2 OTTHUMG00000182591.2 +34135 chr19 HAVANA gene 40216058 40218399 2342.0 - 0 ENSG00000174521.7 protein_coding TTC9B 2 OTTHUMG00000182600.1 +34136 chr19 HAVANA gene 40222208 40226697 2046.0 - 0 ENSG00000105219.9 protein_coding CNTD2 2 OTTHUMG00000160481.4 +34137 chr19 HAVANA gene 40273489 40275479 1462.0 - 0 ENSG00000205041.1 sense_intronic AC118344.1 2 OTTHUMG00000178320.1 overlapping_locus +34138 chr19 ENSEMBL gene 40282543 40282641 99.0 - 0 ENSG00000207631.1 miRNA MIR641 3 +34139 chr19 HAVANA gene 40230317 40285536 15035.0 - 0 ENSG00000105221.16 protein_coding AKT2 1 OTTHUMG00000137375.20 ncRNA_host,overlapping_locus +34140 chr19 ENSEMBL gene 40299478 40299584 107.0 - 0 ENSG00000206674.1 snRNA RNU6-945P 3 +34141 chr19 ENSEMBL gene 40339059 40339164 106.0 - 0 ENSG00000207281.1 misc_RNA RF00019 3 +34142 chr19 ENSEMBL gene 40342329 40342441 113.0 + 0 ENSG00000206925.1 misc_RNA RF00019 3 +34143 chr19 HAVANA gene 40319536 40348527 4875.0 - 0 ENSG00000160392.13 protein_coding C19orf47 2 OTTHUMG00000179028.3 ncRNA_host +34144 chr19 HAVANA gene 40355842 40360606 4765.0 + 0 ENSG00000279759.1 TEC AC118344.2 2 OTTHUMG00000182601.1 overlapping_locus +34145 chr19 ENSEMBL gene 40369846 40369907 62.0 + 0 ENSG00000275652.1 miRNA MIR6796 3 +34146 chr19 HAVANA gene 40348456 40380439 5184.0 + 0 ENSG00000105223.19 protein_coding PLD3 2 OTTHUMG00000152736.7 ncRNA_host,overlapping_locus +34147 chr19 HAVANA gene 40379271 40390187 2452.0 - 0 ENSG00000160396.8 protein_coding HIPK4 2 OTTHUMG00000182598.1 +34148 chr19 HAVANA gene 40393768 40413366 5767.0 - 0 ENSG00000105227.14 protein_coding PRX 2 OTTHUMG00000182597.2 +34149 chr19 HAVANA gene 40421592 40426025 2114.0 - 0 ENSG00000197019.4 protein_coding SERTAD1 2 OTTHUMG00000182594.2 +34150 chr19 HAVANA gene 40426115 40426702 588.0 + 0 ENSG00000277453.1 lincRNA AC010271.2 2 OTTHUMG00000186751.1 +34151 chr19 HAVANA gene 40443436 40444087 558.0 + 0 ENSG00000268366.1 antisense AC010271.1 2 OTTHUMG00000182596.1 +34152 chr19 HAVANA gene 40440844 40444705 2218.0 - 0 ENSG00000167565.12 protein_coding SERTAD3 2 OTTHUMG00000182595.3 +34153 chr19 ENSEMBL gene 40450225 40450480 256.0 + 0 ENSG00000277510.1 misc_RNA RF00017 3 +34154 chr19 HAVANA gene 40447765 40465840 1689.0 - 0 ENSG00000090013.10 protein_coding BLVRB 1 OTTHUMG00000182593.3 +34155 chr19 HAVANA gene 40466241 40576464 11549.0 + 0 ENSG00000160460.15 protein_coding SPTBN4 2 OTTHUMG00000182592.5 +34156 chr19 HAVANA gene 40576851 40591399 3936.0 + 0 ENSG00000160410.14 protein_coding SHKBP1 1 OTTHUMG00000182602.10 +34157 chr19 HAVANA gene 40592883 40629818 8108.0 + 0 ENSG00000090006.17 protein_coding LTBP4 2 OTTHUMG00000182635.12 +34158 chr19 HAVANA gene 40665905 40690972 5823.0 - 0 ENSG00000105245.9 protein_coding NUMBL 1 OTTHUMG00000182627.5 +34159 chr19 ENSEMBL gene 40708055 40708163 109.0 - 0 ENSG00000223284.1 snRNA RNU6-195P 3 +34160 chr19 HAVANA gene 40691529 40718207 5488.0 - 0 ENSG00000123815.11 protein_coding COQ8B 2 OTTHUMG00000182620.7 ncRNA_host +34161 chr19 HAVANA gene 40717103 40740860 3385.0 + 0 ENSG00000086544.2 protein_coding ITPKC 2 OTTHUMG00000182688.2 +34162 chr19 HAVANA gene 40740856 40751553 3375.0 - 0 ENSG00000188493.14 protein_coding C19orf54 1 OTTHUMG00000150174.6 +34163 chr19 HAVANA gene 40750637 40765389 2361.0 + 0 ENSG00000077312.8 protein_coding SNRPA 2 OTTHUMG00000182689.6 +34164 chr19 HAVANA gene 40771648 40777490 1304.0 + 0 ENSG00000261857.6 protein_coding MIA 1 OTTHUMG00000182693.3 overlapping_locus +34165 chr19 HAVANA gene 40778216 40796938 3931.0 + 0 ENSG00000167578.17 protein_coding RAB4B 2 OTTHUMG00000182694.5 overlapping_locus +34166 chr19 HAVANA gene 40779780 40796943 1103.0 - 0 ENSG00000282951.1 antisense AC008537.4 2 OTTHUMG00000191566.1 +34167 chr19 HAVANA gene 40771648 40796943 1809.0 + 0 ENSG00000268975.2 protein_coding MIA-RAB4B 2 OTTHUMG00000182782.3 overlapping_locus +34168 chr19 HAVANA gene 40778242 40808418 3088.0 + 0 ENSG00000171570.11 protein_coding RAB4B-EGLN2 2 OTTHUMG00000182702.4 overlapping_locus +34169 chr19 HAVANA gene 40798996 40808433 6577.0 + 0 ENSG00000269858.5 protein_coding EGLN2 1 OTTHUMG00000182703.5 overlapping_locus +34170 chr19 HAVANA gene 40808474 40812100 2871.0 - 0 ENSG00000233622.3 transcribed_unitary_pseudogene CYP2T1P 1 OTTHUMG00000154549.3 pseudo_consens +34171 chr19 HAVANA gene 40818414 40826772 1547.0 - 0 ENSG00000237118.3 transcribed_processed_pseudogene CYP2F2P 2 OTTHUMG00000154548.2 +34172 chr19 HAVANA gene 40831221 40837210 482.0 - 0 ENSG00000269843.1 lincRNA AC008537.2 2 OTTHUMG00000182774.1 +34173 chr19 HAVANA gene 40840159 40842039 1881.0 + 0 ENSG00000279108.1 TEC AC008537.3 2 OTTHUMG00000182783.1 overlapping_locus +34174 chr19 HAVANA gene 40843538 40850447 2226.0 - 0 ENSG00000255974.7 protein_coding CYP2A6 2 OTTHUMG00000182713.5 +34175 chr19 HAVANA gene 40875439 40882752 2583.0 - 0 ENSG00000198077.10 protein_coding CYP2A7 2 OTTHUMG00000182715.3 +34176 chr19 HAVANA gene 40801297 40898282 575.0 + 0 ENSG00000268797.1 protein_coding AC008537.1 2 OTTHUMG00000182828.1 overlapping_locus +34177 chr19 HAVANA gene 40890826 40900508 2511.0 + 0 ENSG00000130612.14 transcribed_unprocessed_pseudogene CYP2G1P 2 OTTHUMG00000182772.4 overlapping_locus +34178 chr19 HAVANA gene 40908480 40910685 641.0 - 0 ENSG00000198251.7 unprocessed_pseudogene CYP2A7P2 2 OTTHUMG00000182829.2 +34179 chr19 HAVANA gene 40946347 40947450 549.0 + 0 ENSG00000269353.1 sense_intronic AC092071.1 2 OTTHUMG00000182775.1 overlapping_locus +34180 chr19 HAVANA gene 40924219 40950660 4064.0 + 0 ENSG00000256612.7 transcribed_unprocessed_pseudogene CYP2B7P 2 OTTHUMG00000182706.6 overlapping_locus +34181 chr19 HAVANA gene 40991250 41018398 3765.0 + 0 ENSG00000197408.9 protein_coding CYP2B6 2 OTTHUMG00000182714.6 +34182 chr19 HAVANA gene 41024268 41027720 815.0 - 0 ENSG00000213908.4 unprocessed_pseudogene CYP2A7P1 2 OTTHUMG00000182830.1 +34183 chr19 HAVANA gene 41050449 41062444 1485.0 - 0 ENSG00000268101.2 unprocessed_pseudogene CYP2G2P 2 OTTHUMG00000182851.2 +34184 chr19 HAVANA gene 41073804 41074107 304.0 - 0 ENSG00000271299.1 processed_pseudogene AC008962.1 1 OTTHUMG00000184961.1 pseudo_consens +34185 chr19 HAVANA gene 41088472 41096195 1739.0 + 0 ENSG00000197838.4 protein_coding CYP2A13 2 OTTHUMG00000182762.1 +34186 chr19 HAVANA gene 41114432 41128366 2994.0 + 0 ENSG00000197446.8 protein_coding CYP2F1 2 OTTHUMG00000167412.6 +34187 chr19 HAVANA gene 41134722 41137308 817.0 + 0 ENSG00000268529.1 unprocessed_pseudogene CYP2T3P 2 OTTHUMG00000182855.1 +34188 chr19 HAVANA gene 41169861 41170166 306.0 + 0 ENSG00000224476.3 processed_pseudogene RPL36P16 1 OTTHUMG00000158200.1 pseudo_consens +34189 chr19 ENSEMBL gene 41190927 41191229 303.0 - 0 ENSG00000264423.2 misc_RNA RN7SL718P 3 +34190 chr19 HAVANA gene 41193049 41207539 2874.0 + 0 ENSG00000167600.13 protein_coding CYP2S1 1 OTTHUMG00000182721.4 +34191 chr19 HAVANA gene 41221426 41222051 286.0 - 0 ENSG00000269652.1 antisense AC011510.1 2 OTTHUMG00000182739.1 +34192 chr19 HAVANA gene 41219203 41261766 5154.0 + 0 ENSG00000167601.11 protein_coding AXL 1 OTTHUMG00000182727.3 +34193 chr19 ENSEMBL gene 41286424 41286693 270.0 - 0 ENSG00000239868.3 misc_RNA RN7SL34P 3 +34194 chr19 HAVANA gene 41262496 41307598 6543.0 + 0 ENSG00000105323.16 protein_coding HNRNPUL1 1 OTTHUMG00000182740.6 +34195 chr19 HAVANA gene 41310189 41324883 3821.0 + 0 ENSG00000142039.3 protein_coding CCDC97 1 OTTHUMG00000182722.5 +34196 chr19 HAVANA gene 41301587 41353911 3238.0 - 0 ENSG00000105329.9 protein_coding TGFB1 1 OTTHUMG00000182760.5 +34197 chr19 HAVANA gene 41354421 41364173 1316.0 - 0 ENSG00000123810.7 protein_coding B9D2 2 OTTHUMG00000182758.1 +34198 chr19 HAVANA gene 41373971 41374419 449.0 + 0 ENSG00000277744.1 sense_intronic AC011462.4 2 OTTHUMG00000186754.1 overlapping_locus +34199 chr19 HAVANA gene 41350911 41384083 2796.0 + 0 ENSG00000142046.14 protein_coding TMEM91 1 OTTHUMG00000168127.3 overlapping_locus +34200 chr19 HAVANA gene 41386374 41397479 1488.0 - 0 ENSG00000077348.8 protein_coding EXOSC5 1 OTTHUMG00000182759.2 +34201 chr19 HAVANA gene 41399372 41400365 540.0 + 0 ENSG00000268987.1 sense_intronic AC011462.3 2 OTTHUMG00000182773.1 overlapping_locus +34202 chr19 HAVANA gene 41350853 41425001 2347.0 + 0 ENSG00000255730.5 protein_coding AC011462.1 2 OTTHUMG00000168134.1 overlapping_locus +34203 chr19 HAVANA gene 41397460 41425005 2602.0 + 0 ENSG00000248098.11 protein_coding BCKDHA 1 OTTHUMG00000168128.4 overlapping_locus +34204 chr19 HAVANA gene 41425359 41426237 344.0 + 0 ENSG00000268475.1 antisense AC011462.2 2 OTTHUMG00000182748.1 +34205 chr19 HAVANA gene 41425359 41428730 1874.0 - 0 ENSG00000177191.2 protein_coding B3GNT8 2 OTTHUMG00000182749.1 +34206 chr19 HAVANA gene 41431318 41440717 4381.0 - 0 ENSG00000105341.18 protein_coding DMAC2 1 OTTHUMG00000182342.5 +34207 chr19 ENSEMBL gene 41442102 41442392 291.0 - 0 ENSG00000277136.1 misc_RNA RF00017 3 +34208 chr19 HAVANA gene 41443158 41444765 946.0 + 0 ENSG00000204978.2 protein_coding ERICH4 2 OTTHUMG00000187130.1 +34209 chr19 HAVANA gene 41454169 41500649 3884.0 - 0 ENSG00000267107.6 lincRNA PCAT19 2 OTTHUMG00000182344.3 +34210 chr19 HAVANA gene 41506152 41506898 747.0 + 0 ENSG00000268034.1 processed_pseudogene AC243960.2 1 OTTHUMG00000182621.1 pseudo_consens +34211 chr19 HAVANA gene 41521043 41521989 894.0 - 0 ENSG00000269800.1 processed_pseudogene PLEKHA3P1 1 OTTHUMG00000182622.2 pseudo_consens +34212 chr19 HAVANA gene 41531206 41532174 969.0 + 0 ENSG00000268355.1 lincRNA AC243960.3 2 OTTHUMG00000182623.2 +34213 chr19 HAVANA gene 41535183 41536904 1722.0 + 0 ENSG00000270164.1 lincRNA LINC01480 2 OTTHUMG00000184156.2 +34214 chr19 HAVANA gene 41551568 41552274 707.0 - 0 ENSG00000280014.1 TEC AC243960.7 2 OTTHUMG00000182625.2 +34215 chr19 HAVANA gene 41545192 41555462 1440.0 + 0 ENSG00000268027.5 lincRNA AC243960.1 2 OTTHUMG00000182624.2 overlapping_locus +34216 chr19 HAVANA gene 41549518 41586844 1964.0 + 0 ENSG00000007129.17 protein_coding CEACAM21 2 OTTHUMG00000151062.8 overlapping_locus +34217 chr19 HAVANA gene 41605341 41605671 302.0 - 0 ENSG00000269266.1 processed_pseudogene DNAJC19P2 1 OTTHUMG00000182626.1 pseudo_consens +34218 chr19 HAVANA gene 41599735 41605984 1927.0 + 0 ENSG00000239736.2 transcribed_unprocessed_pseudogene CEACAMP3 1 OTTHUMG00000151558.3 +34219 chr19 HAVANA gene 41618971 41627074 1364.0 - 0 ENSG00000105352.10 protein_coding CEACAM4 2 OTTHUMG00000151065.3 +34220 chr19 HAVANA gene 41638569 41638899 331.0 - 0 ENSG00000268997.1 processed_pseudogene DNAJC19P3 1 OTTHUMG00000182636.1 pseudo_consens +34221 chr19 HAVANA gene 41639659 41640602 255.0 - 0 ENSG00000269354.1 processed_pseudogene AC243960.5 2 OTTHUMG00000182637.1 +34222 chr19 HAVANA gene 41652676 41652963 288.0 + 0 ENSG00000268582.1 processed_pseudogene AC243960.4 1 OTTHUMG00000182638.1 pseudo_consens +34223 chr19 HAVANA gene 41673307 41706976 2649.0 - 0 ENSG00000007306.14 protein_coding CEACAM7 2 OTTHUMG00000151063.3 +34224 chr19 HAVANA gene 41708585 41729798 3351.0 + 0 ENSG00000105388.15 protein_coding CEACAM5 1 OTTHUMG00000151061.4 overlapping_locus +34225 chr19 HAVANA gene 41708612 41761282 716.0 + 0 ENSG00000267881.1 protein_coding AC243967.1 2 OTTHUMG00000182656.2 overlapping_locus +34226 chr19 HAVANA gene 41750977 41772208 3052.0 + 0 ENSG00000086548.8 protein_coding CEACAM6 2 OTTHUMG00000151064.4 overlapping_locus +34227 chr19 HAVANA gene 41757898 41786893 567.0 - 0 ENSG00000268833.1 antisense AC243967.2 2 OTTHUMG00000182657.1 +34228 chr19 HAVANA gene 41796437 41811553 3080.0 + 0 ENSG00000170956.16 protein_coding CEACAM3 2 OTTHUMG00000150142.6 +34229 chr19 HAVANA gene 41829692 41830938 947.0 + 0 ENSG00000269119.1 processed_pseudogene HNRNPA1P52 1 OTTHUMG00000182661.1 pseudo_consens +34230 chr19 HAVANA gene 41833686 41835950 2265.0 - 0 ENSG00000278239.1 lincRNA AC243967.3 2 OTTHUMG00000188263.1 +34231 chr19 HAVANA gene 41837074 41844697 2165.0 - 0 ENSG00000273111.5 protein_coding LYPD4 2 OTTHUMG00000182674.4 +34232 chr19 HAVANA gene 41844743 41852333 3389.0 + 0 ENSG00000142025.15 protein_coding DMRTC2 2 OTTHUMG00000182675.3 +34233 chr19 ENSEMBL gene 41869627 41869698 72.0 + 0 ENSG00000276926.1 miRNA MIR6797 3 +34234 chr19 HAVANA gene 41859918 41872926 3805.0 + 0 ENSG00000105372.7 protein_coding RPS19 2 OTTHUMG00000182676.5 ncRNA_host +34235 chr19 HAVANA gene 41877120 41881372 1503.0 + 0 ENSG00000105369.9 protein_coding CD79A 2 OTTHUMG00000182678.2 +34236 chr19 HAVANA gene 41907705 41928516 2078.0 - 0 ENSG00000268041.2 protein_coding AC010616.1 2 OTTHUMG00000182736.2 +34237 chr19 HAVANA gene 41883161 41930150 8636.0 + 0 ENSG00000076928.17 protein_coding ARHGEF1 1 OTTHUMG00000182679.5 +34238 chr19 HAVANA gene 41956681 41959390 1999.0 - 0 ENSG00000105404.10 protein_coding RABAC1 1 OTTHUMG00000182737.1 overlapping_locus +34239 chr19 HAVANA gene 41956879 41994232 3536.0 - 0 ENSG00000285505.1 protein_coding AC010616.2 2 OTTHUMG00000192534.1 overlapping_locus +34240 chr19 HAVANA gene 41966582 41997497 5304.0 - 0 ENSG00000105409.18 protein_coding ATP1A3 1 OTTHUMG00000137384.11 overlapping_locus +34241 chr19 HAVANA gene 41998321 42069498 5014.0 - 0 ENSG00000105737.9 protein_coding GRIK5 2 OTTHUMG00000044573.2 +34242 chr19 HAVANA gene 42068477 42081549 4666.0 + 0 ENSG00000105732.12 protein_coding ZNF574 2 OTTHUMG00000182751.4 +34243 chr19 ENSEMBL gene 42133445 42133513 69.0 - 0 ENSG00000266226.1 miRNA MIR4323 3 +34244 chr19 HAVANA gene 42132555 42137099 897.0 + 0 ENSG00000254887.1 processed_transcript AC010247.1 1 OTTHUMG00000165992.1 +34245 chr19 HAVANA gene 42152569 42157523 1955.0 + 0 ENSG00000259436.1 antisense AC010247.2 2 OTTHUMG00000171961.1 +34246 chr19 HAVANA gene 42086110 42196585 9072.0 - 0 ENSG00000028277.21 protein_coding POU2F2 2 OTTHUMG00000165991.12 ncRNA_host +34247 chr19 HAVANA gene 42198598 42220140 2631.0 - 0 ENSG00000160570.13 protein_coding DEDD2 2 OTTHUMG00000182763.4 +34248 chr19 HAVANA gene 42220271 42228201 4271.0 + 0 ENSG00000167625.10 protein_coding ZNF526 2 OTTHUMG00000182785.4 +34249 chr19 HAVANA gene 42230186 42242625 4126.0 - 0 ENSG00000105723.11 protein_coding GSK3A 2 OTTHUMG00000150722.2 overlapping_locus +34250 chr19 HAVANA gene 42242775 42244973 2199.0 + 0 ENSG00000279539.1 TEC AC006486.2 2 OTTHUMG00000182787.1 +34251 chr19 HAVANA gene 42234583 42255132 634.0 - 0 ENSG00000268643.1 protein_coding AC006486.1 2 OTTHUMG00000182786.2 overlapping_locus +34252 chr19 HAVANA gene 42247572 42255157 3295.0 - 0 ENSG00000105722.9 protein_coding ERF 2 OTTHUMG00000182788.2 overlapping_locus +34253 chr19 HAVANA gene 42268537 42295797 9494.0 + 0 ENSG00000079432.7 protein_coding CIC 1 OTTHUMG00000182794.3 +34254 chr19 HAVANA gene 42297033 42303546 1419.0 - 0 ENSG00000079462.7 protein_coding PAFAH1B3 2 OTTHUMG00000182795.2 +34255 chr19 HAVANA gene 42302098 42310821 2575.0 + 0 ENSG00000188368.9 protein_coding PRR19 2 OTTHUMG00000182796.2 +34256 chr19 HAVANA gene 42313325 42325062 2640.0 + 0 ENSG00000167619.11 protein_coding TMEM145 1 OTTHUMG00000177694.3 +34257 chr19 ENSEMBL gene 42351131 42351205 75.0 + 0 ENSG00000277533.1 miRNA MIR8077 3 +34258 chr19 HAVANA gene 42325609 42378769 11372.0 + 0 ENSG00000105429.12 protein_coding MEGF8 2 OTTHUMG00000150342.2 ncRNA_host +34259 chr19 HAVANA gene 42387019 42390287 603.0 - 0 ENSG00000105427.9 protein_coding CNFN 2 OTTHUMG00000182813.1 +34260 chr19 HAVANA gene 42424384 42425071 561.0 - 0 ENSG00000268605.1 sense_intronic AC011497.1 2 OTTHUMG00000182816.1 overlapping_locus +34261 chr19 HAVANA gene 42401507 42427426 5206.0 - 0 ENSG00000079435.9 protein_coding LIPE 1 OTTHUMG00000182814.3 overlapping_locus +34262 chr19 HAVANA gene 42428288 42443048 1189.0 - 0 ENSG00000189377.8 protein_coding CXCL17 2 OTTHUMG00000182817.1 +34263 chr19 ENSEMBL gene 42472875 42473009 135.0 + 0 ENSG00000253048.1 snRNA RNU4-60P 3 +34264 chr19 HAVANA gene 42485076 42485714 639.0 - 0 ENSG00000269374.1 processed_pseudogene AC011497.2 1 OTTHUMG00000182818.1 pseudo_consens +34265 chr19 HAVANA gene 42507304 42561234 5524.0 - 0 ENSG00000079385.21 protein_coding CEACAM1 2 OTTHUMG00000151078.7 overlapping_locus +34266 chr19 HAVANA gene 42560433 42561750 440.0 - 0 ENSG00000230558.2 unprocessed_pseudogene CEACAMP2 2 OTTHUMG00000151119.2 overlapping_locus +34267 chr19 HAVANA gene 42580241 42595055 2551.0 - 0 ENSG00000124469.11 protein_coding CEACAM8 2 OTTHUMG00000151124.2 +34268 chr19 HAVANA gene 42620212 42633034 1035.0 - 0 ENSG00000233681.1 unprocessed_pseudogene CEACAMP1 2 OTTHUMG00000151128.2 +34269 chr19 HAVANA gene 42397128 42652355 4208.0 + 0 ENSG00000213904.8 antisense LIPE-AS1 2 OTTHUMG00000182815.3 ncRNA_host +34270 chr19 HAVANA gene 42654200 42669076 961.0 + 0 ENSG00000231561.2 unprocessed_pseudogene CEACAMP5 2 OTTHUMG00000151122.2 +34271 chr19 HAVANA gene 42670005 42670816 498.0 + 0 ENSG00000243167.1 processed_pseudogene RPS10P28 1 OTTHUMG00000158201.1 pseudo_consens +34272 chr19 HAVANA gene 42721638 42740569 3486.0 - 0 ENSG00000221826.9 protein_coding PSG3 2 OTTHUMG00000151120.3 +34273 chr19 HAVANA gene 42781206 42786595 574.0 - 0 ENSG00000238092.1 unprocessed_pseudogene CEACAMP6 2 OTTHUMG00000151126.2 overlapping_locus +34274 chr19 HAVANA gene 42821863 42826878 1873.0 + 0 ENSG00000225877.1 lincRNA PSG8-AS1 1 OTTHUMG00000151551.3 +34275 chr19 HAVANA gene 42752686 42855691 4090.0 - 0 ENSG00000124467.18 protein_coding PSG8 1 OTTHUMG00000151118.3 overlapping_locus +34276 chr19 HAVANA gene 42839368 42855718 1819.0 - 0 ENSG00000248257.7 transcribed_unprocessed_pseudogene PSG10P 2 OTTHUMG00000151550.4 overlapping_locus +34277 chr19 HAVANA gene 42866464 42879822 4961.0 - 0 ENSG00000231924.9 protein_coding PSG1 2 OTTHUMG00000151123.3 +34278 chr19 HAVANA gene 42902079 42919563 5140.0 - 0 ENSG00000170848.15 protein_coding PSG6 1 OTTHUMG00000151127.5 +34279 chr19 HAVANA gene 42924132 42937178 4795.0 - 0 ENSG00000221878.12 protein_coding PSG7 2 OTTHUMG00000151125.9 +34280 chr19 HAVANA gene 42949503 42950387 496.0 - 0 ENSG00000227349.1 unprocessed_pseudogene CEACAMP7 2 OTTHUMG00000151121.2 +34281 chr19 HAVANA gene 43007656 43026512 5032.0 - 0 ENSG00000243130.7 protein_coding PSG11 1 OTTHUMG00000151546.4 +34282 chr19 HAVANA gene 43035869 43041248 580.0 - 0 ENSG00000236932.2 unprocessed_pseudogene CEACAMP8 2 OTTHUMG00000151548.2 +34283 chr19 HAVANA gene 43064211 43083045 2798.0 - 0 ENSG00000242221.8 protein_coding PSG2 2 OTTHUMG00000151547.2 +34284 chr19 HAVANA gene 43096456 43097360 513.0 - 0 ENSG00000230529.1 unprocessed_pseudogene CEACAMP9 2 OTTHUMG00000151549.1 +34285 chr19 HAVANA gene 43153279 43160862 500.0 + 0 ENSG00000227606.2 lincRNA AC005392.1 2 OTTHUMG00000151543.1 +34286 chr19 HAVANA gene 42977463 43171515 2168.0 + 0 ENSG00000282943.1 antisense AC004784.1 2 OTTHUMG00000191604.1 +34287 chr19 HAVANA gene 43166256 43186536 4678.0 - 0 ENSG00000204941.13 protein_coding PSG5 2 OTTHUMG00000151539.3 +34288 chr19 HAVANA gene 43192702 43207299 6274.0 - 0 ENSG00000243137.7 protein_coding PSG4 1 OTTHUMG00000151544.6 +34289 chr19 HAVANA gene 43211791 43248646 1962.0 - 0 ENSG00000241104.5 transcribed_processed_pseudogene CEACAMP10 2 OTTHUMG00000151538.1 overlapping_locus +34290 chr19 HAVANA gene 43211791 43269530 5048.0 - 0 ENSG00000183668.17 protein_coding PSG9 2 OTTHUMG00000182826.1 overlapping_locus +34291 chr19 HAVANA gene 43278933 43284318 583.0 - 0 ENSG00000236123.1 unprocessed_pseudogene CEACAMP11 2 OTTHUMG00000151540.1 +34292 chr19 HAVANA gene 43303171 43304523 421.0 - 0 ENSG00000230681.1 unprocessed_pseudogene CEACAMP4 2 OTTHUMG00000151545.1 +34293 chr19 HAVANA gene 43329295 43331430 301.0 - 0 ENSG00000231412.2 lincRNA AC005392.2 2 OTTHUMG00000182827.1 +34294 chr19 HAVANA gene 43353659 43363172 2501.0 + 0 ENSG00000204936.9 protein_coding CD177 2 OTTHUMG00000185320.3 +34295 chr19 HAVANA gene 43360685 43368970 459.0 - 0 ENSG00000272396.1 antisense AC005392.3 2 OTTHUMG00000185321.1 +34296 chr19 HAVANA gene 43372742 43379123 935.0 - 0 ENSG00000204933.3 unprocessed_pseudogene CD177P1 2 OTTHUMG00000185322.1 +34297 chr19 HAVANA gene 43401496 43418597 1597.0 + 0 ENSG00000131126.18 protein_coding TEX101 2 OTTHUMG00000182695.2 +34298 chr19 HAVANA gene 43460787 43465660 2519.0 - 0 ENSG00000124466.8 protein_coding LYPD3 2 OTTHUMG00000182696.2 +34299 chr19 HAVANA gene 43474954 43504935 4553.0 - 0 ENSG00000176531.10 protein_coding PHLDB3 1 OTTHUMG00000150693.5 +34300 chr19 HAVANA gene 43506719 43527244 1604.0 - 0 ENSG00000105755.7 protein_coding ETHE1 2 OTTHUMG00000182697.2 +34301 chr19 HAVANA gene 43525497 43536130 3222.0 + 0 ENSG00000176472.10 protein_coding ZNF575 1 OTTHUMG00000182698.4 +34302 chr19 HAVANA gene 43553445 43555494 561.0 + 0 ENSG00000269177.1 antisense L34079.2 2 OTTHUMG00000182732.1 +34303 chr19 HAVANA gene 43574638 43575618 546.0 + 0 ENSG00000269583.1 antisense L34079.3 2 OTTHUMG00000182733.1 +34304 chr19 HAVANA gene 43543040 43580473 3459.0 - 0 ENSG00000073050.11 protein_coding XRCC1 1 OTTHUMG00000182699.4 overlapping_locus +34305 chr19 HAVANA gene 43576800 43583964 3570.0 + 0 ENSG00000234465.10 protein_coding PINLYP 1 OTTHUMG00000175560.4 +34306 chr19 HAVANA gene 43554692 43593036 393.0 - 0 ENSG00000268361.1 protein_coding L34079.1 2 OTTHUMG00000182700.2 overlapping_locus +34307 chr19 HAVANA gene 43584369 43596135 9869.0 - 0 ENSG00000167378.8 protein_coding IRGQ 2 OTTHUMG00000182701.4 overlapping_locus +34308 chr19 HAVANA gene 43596392 43601157 3481.0 + 0 ENSG00000124444.15 protein_coding ZNF576 2 OTTHUMG00000165479.2 overlapping_locus +34309 chr19 HAVANA gene 43596617 43614497 2698.0 + 0 ENSG00000226763.4 protein_coding SRRM5 2 OTTHUMG00000165480.2 overlapping_locus +34310 chr19 HAVANA gene 43607219 43619874 1803.0 - 0 ENSG00000131116.11 protein_coding ZNF428 2 OTTHUMG00000182734.3 +34311 chr19 HAVANA gene 43622368 43639839 2246.0 - 0 ENSG00000105767.2 protein_coding CADM4 2 OTTHUMG00000182735.2 +34312 chr19 ENSEMBL gene 43660500 43660776 277.0 - 0 ENSG00000239948.2 misc_RNA RN7SL368P 3 +34313 chr19 HAVANA gene 43646095 43670547 4457.0 - 0 ENSG00000011422.11 protein_coding PLAUR 1 OTTHUMG00000182778.2 ncRNA_host +34314 chr19 HAVANA gene 43690002 43700508 1703.0 + 0 ENSG00000283525.1 transcribed_unprocessed_pseudogene AC005622.1 2 OTTHUMG00000191711.1 +34315 chr19 HAVANA gene 43716010 43720021 1775.0 + 0 ENSG00000124449.6 protein_coding IRGC 2 OTTHUMG00000154587.4 +34316 chr19 HAVANA gene 43727992 43754990 7927.0 - 0 ENSG00000105771.13 protein_coding SMG9 2 OTTHUMG00000150337.4 +34317 chr19 HAVANA gene 43766533 43781261 3408.0 - 0 ENSG00000104783.12 protein_coding KCNN4 2 OTTHUMG00000182779.4 +34318 chr19 HAVANA gene 43794309 43795658 556.0 - 0 ENSG00000268601.1 lincRNA AC115522.1 2 OTTHUMG00000182780.1 +34319 chr19 HAVANA gene 43795929 43827206 5091.0 - 0 ENSG00000159871.14 protein_coding LYPD5 2 OTTHUMG00000182781.3 +34320 chr19 HAVANA gene 43827292 43852017 7229.0 + 0 ENSG00000167637.16 protein_coding ZNF283 1 OTTHUMG00000182186.2 +34321 chr19 HAVANA gene 43891233 43895411 4179.0 + 0 ENSG00000278917.1 TEC AC006213.6 2 OTTHUMG00000182207.1 +34322 chr19 HAVANA gene 43872363 43901385 2479.0 - 0 ENSG00000176222.8 protein_coding ZNF404 2 OTTHUMG00000182206.1 overlapping_locus +34323 chr19 HAVANA gene 43891804 43901805 2193.0 - 0 ENSG00000267058.1 lincRNA AC006213.2 2 OTTHUMG00000182208.1 overlapping_locus +34324 chr19 HAVANA gene 43902001 43926545 517.0 + 0 ENSG00000267191.1 antisense AC006213.3 2 OTTHUMG00000182188.1 +34325 chr19 HAVANA gene 43912629 43935278 4393.0 - 0 ENSG00000124459.11 protein_coding ZNF45 2 OTTHUMG00000182189.2 +34326 chr19 HAVANA gene 43951223 43967709 2717.0 + 0 ENSG00000159905.14 protein_coding ZNF221 2 OTTHUMG00000182214.3 +34327 chr19 HAVANA gene 43976815 43977448 634.0 + 0 ENSG00000277806.1 sense_intronic AC006213.4 2 OTTHUMG00000189065.1 +34328 chr19 HAVANA gene 43978376 43978663 288.0 + 0 ENSG00000278492.1 sense_intronic AC006213.5 2 OTTHUMG00000189066.1 +34329 chr19 HAVANA gene 43967862 43998325 3454.0 + 0 ENSG00000204920.10 protein_coding ZNF155 1 OTTHUMG00000182215.3 +34330 chr19 HAVANA gene 43996896 44002836 2909.0 - 0 ENSG00000266921.1 antisense AC006213.1 2 OTTHUMG00000182306.1 +34331 chr19 HAVANA gene 44002948 44013926 6298.0 + 0 ENSG00000159882.12 protein_coding ZNF230 2 OTTHUMG00000182307.2 +34332 chr19 HAVANA gene 44023604 44025262 566.0 - 0 ENSG00000267144.1 lincRNA AC067968.2 2 OTTHUMG00000182308.1 +34333 chr19 HAVANA gene 44025342 44033112 2003.0 + 0 ENSG00000159885.13 protein_coding ZNF222 1 OTTHUMG00000182309.2 overlapping_locus +34334 chr19 HAVANA gene 44051367 44067991 3329.0 + 0 ENSG00000178386.12 protein_coding ZNF223 2 OTTHUMG00000182311.3 overlapping_locus +34335 chr19 ENSEMBL gene 44085213 44085303 91.0 - 0 ENSG00000253021.1 snRNA RNU6-902P 3 +34336 chr19 HAVANA gene 44025354 44087318 3766.0 + 0 ENSG00000267022.1 protein_coding AC067968.1 2 OTTHUMG00000182310.1 overlapping_locus +34337 chr19 HAVANA gene 44072144 44089613 4351.0 + 0 ENSG00000186026.6 protein_coding ZNF284 2 OTTHUMG00000182312.1 overlapping_locus +34338 chr19 HAVANA gene 44094339 44109886 7104.0 + 0 ENSG00000267680.5 protein_coding ZNF224 2 OTTHUMG00000182313.4 +34339 chr19 HAVANA gene 44105463 44113145 3488.0 - 0 ENSG00000186019.10 antisense AC021092.1 2 OTTHUMG00000182335.1 +34340 chr19 HAVANA gene 44112181 44134816 7226.0 + 0 ENSG00000256294.7 protein_coding ZNF225 2 OTTHUMG00000182336.4 +34341 chr19 HAVANA gene 44141557 44160309 5210.0 + 0 ENSG00000263002.7 protein_coding ZNF234 2 OTTHUMG00000182337.4 +34342 chr19 HAVANA gene 44165073 44178381 6922.0 + 0 ENSG00000167380.16 protein_coding ZNF226 2 OTTHUMG00000182351.2 +34343 chr19 HAVANA gene 44207547 44237268 5069.0 + 0 ENSG00000131115.15 protein_coding ZNF227 1 OTTHUMG00000182352.2 +34344 chr19 HAVANA gene 44246478 44248374 1897.0 - 0 ENSG00000279103.1 TEC AC138470.1 2 OTTHUMG00000175772.1 overlapping_locus +34345 chr19 HAVANA gene 44259880 44275317 4051.0 + 0 ENSG00000159915.12 protein_coding ZNF233 1 OTTHUMG00000182354.2 +34346 chr19 HAVANA gene 44290081 44290911 526.0 + 0 ENSG00000270679.1 processed_pseudogene AC138473.1 1 OTTHUMG00000184978.1 pseudo_consens +34347 chr19 HAVANA gene 44297104 44297355 252.0 + 0 ENSG00000267590.1 processed_pseudogene NDUFA3P1 1 OTTHUMG00000182355.1 pseudo_consens +34348 chr19 HAVANA gene 44228729 44305046 5989.0 - 0 ENSG00000159917.16 protein_coding ZNF235 2 OTTHUMG00000182353.3 overlapping_locus +34349 chr19 HAVANA gene 44326555 44367217 3848.0 - 0 ENSG00000062370.16 protein_coding ZNF112 2 OTTHUMG00000182357.4 overlapping_locus +34350 chr19 HAVANA gene 44382298 44401608 6866.0 - 0 ENSG00000267508.5 protein_coding ZNF285 2 OTTHUMG00000178848.6 overlapping_locus +34351 chr19 HAVANA gene 44329695 44401608 561.0 - 0 ENSG00000267173.1 protein_coding AC245748.1 2 OTTHUMG00000182375.2 overlapping_locus +34352 chr19 HAVANA gene 44392439 44448452 574.0 - 0 ENSG00000267188.1 processed_transcript AC245748.2 2 OTTHUMG00000182376.2 overlapping_locus +34353 chr19 HAVANA gene 44417519 44448578 5505.0 - 0 ENSG00000278318.4 protein_coding ZNF229 2 OTTHUMG00000182377.4 overlapping_locus +34354 chr19 HAVANA gene 44467641 44473227 1767.0 + 0 ENSG00000176761.7 unprocessed_pseudogene ZNF285B 2 OTTHUMG00000176423.2 +34355 chr19 HAVANA gene 44474428 44500524 4783.0 - 0 ENSG00000167384.10 protein_coding ZNF180 1 OTTHUMG00000180495.4 +34356 chr19 HAVANA gene 44501677 44529788 2193.0 - 0 ENSG00000273777.4 protein_coding CEACAM20 2 OTTHUMG00000151532.3 +34357 chr19 HAVANA gene 44536263 44536613 241.0 - 0 ENSG00000267614.1 lincRNA AC245748.3 2 OTTHUMG00000180496.2 +34358 chr19 HAVANA gene 44570304 44570564 261.0 - 0 ENSG00000224366.1 unprocessed_pseudogene AC243964.1 2 OTTHUMG00000151529.1 overlapping_locus +34359 chr19 HAVANA gene 44537058 44620821 3170.0 - 0 ENSG00000230666.5 transcribed_unprocessed_pseudogene CEACAM22P 2 OTTHUMG00000151530.2 overlapping_locus +34360 chr19 HAVANA gene 44613630 44636781 1347.0 + 0 ENSG00000216588.8 protein_coding IGSF23 1 OTTHUMG00000151531.4 +34361 chr19 ENSEMBL gene 44653686 44653732 47.0 - 0 ENSG00000283673.1 miRNA MIR4531 3 +34362 chr19 HAVANA gene 44643798 44663583 3519.0 + 0 ENSG00000073008.14 protein_coding PVR 2 OTTHUMG00000151527.4 overlapping_locus +34363 chr19 HAVANA gene 44664131 44666158 2028.0 + 0 ENSG00000279095.1 TEC AC243964.3 2 OTTHUMG00000188264.1 overlapping_locus +34364 chr19 HAVANA gene 44662278 44684359 5203.0 + 0 ENSG00000186567.12 protein_coding CEACAM19 2 OTTHUMG00000151528.5 overlapping_locus +34365 chr19 HAVANA gene 44699151 44710714 1693.0 + 0 ENSG00000213892.11 protein_coding CEACAM16 1 OTTHUMG00000151519.4 +34366 chr19 HAVANA gene 44632199 44718759 1418.0 - 0 ENSG00000266903.1 antisense AC243964.2 2 OTTHUMG00000180497.2 ncRNA_host +34367 chr19 ENSEMBL gene 44725984 44726058 75.0 - 0 ENSG00000252200.1 snoRNA RF00285 3 +34368 chr19 ENSEMBL gene 44758657 44758721 65.0 + 0 ENSG00000284258.1 miRNA MIR8085 3 +34369 chr19 HAVANA gene 44747705 44760044 3242.0 + 0 ENSG00000069399.14 protein_coding BCL3 1 OTTHUMG00000151517.3 ncRNA_host +34370 chr19 ENSEMBL gene 44764950 44765100 151.0 + 0 ENSG00000253027.1 snoRNA RF00156 3 +34371 chr19 HAVANA gene 44765148 44765464 317.0 + 0 ENSG00000236807.1 processed_pseudogene AC092066.1 2 OTTHUMG00000151518.1 +34372 chr19 HAVANA gene 44777869 44800652 1613.0 + 0 ENSG00000142273.12 protein_coding CBLC 2 OTTHUMG00000150715.5 +34373 chr19 HAVANA gene 44803701 44804010 310.0 + 0 ENSG00000285128.1 lincRNA AC092306.1 2 OTTHUMG00000192457.1 +34374 chr19 HAVANA gene 44809059 44821421 5009.0 + 0 ENSG00000187244.11 protein_coding BCAM 1 OTTHUMG00000180838.5 +34375 chr19 HAVANA gene 44846175 44889228 3747.0 + 0 ENSG00000130202.9 protein_coding NECTIN2 1 OTTHUMG00000180839.2 +34376 chr19 HAVANA gene 44882027 44890876 426.0 - 0 ENSG00000267282.1 antisense AC011481.2 2 OTTHUMG00000180840.1 +34377 chr19 HAVANA gene 44890569 44903689 3610.0 + 0 ENSG00000130204.12 protein_coding TOMM40 2 OTTHUMG00000180842.3 +34378 chr19 HAVANA gene 44905754 44909393 2191.0 + 0 ENSG00000130203.9 protein_coding APOE 2 OTTHUMG00000128901.4 overlapping_locus +34379 chr19 HAVANA gene 44909375 44914968 5594.0 + 0 ENSG00000280087.1 TEC AC011481.3 2 OTTHUMG00000180843.1 overlapping_locus +34380 chr19 HAVANA gene 44914247 44919349 1231.0 + 0 ENSG00000130208.9 protein_coding APOC1 2 OTTHUMG00000180844.2 overlapping_locus +34381 chr19 HAVANA gene 44926804 44931386 938.0 + 0 ENSG00000214855.9 transcribed_unprocessed_pseudogene APOC1P1 2 OTTHUMG00000177534.2 +34382 chr19 HAVANA gene 44942238 44945496 741.0 + 0 ENSG00000267467.3 protein_coding APOC4 2 OTTHUMG00000180845.1 overlapping_locus +34383 chr19 HAVANA gene 44945982 44949565 1316.0 + 0 ENSG00000234906.9 protein_coding APOC2 2 OTTHUMG00000180847.3 overlapping_locus +34384 chr19 HAVANA gene 44942238 44949565 1829.0 + 0 ENSG00000224916.9 protein_coding APOC4-APOC2 1 OTTHUMG00000180846.1 overlapping_locus +34385 chr19 HAVANA gene 44950044 44954007 361.0 - 0 ENSG00000267114.1 lincRNA AC011481.1 1 OTTHUMG00000180848.1 +34386 chr19 HAVANA gene 44954585 44993341 5229.0 + 0 ENSG00000104853.15 protein_coding CLPTM1 1 OTTHUMG00000180849.2 +34387 chr19 HAVANA gene 45001430 45038198 3035.0 + 0 ENSG00000104856.13 protein_coding RELB 2 OTTHUMG00000162116.2 +34388 chr19 ENSEMBL gene 45047458 45047561 104.0 + 0 ENSG00000207003.1 snRNA RNU6-611P 3 +34389 chr19 HAVANA gene 45039040 45070956 4931.0 + 0 ENSG00000104859.14 protein_coding CLASRP 2 OTTHUMG00000150189.4 ncRNA_host +34390 chr19 HAVANA gene 45071500 45076588 1744.0 - 0 ENSG00000170684.8 protein_coding ZNF296 2 OTTHUMG00000181766.1 overlapping_locus +34391 chr19 HAVANA gene 45076510 45090391 1002.0 - 0 ENSG00000267348.2 antisense GEMIN7-AS1 1 OTTHUMG00000181770.1 overlapping_locus +34392 chr19 HAVANA gene 45079195 45091524 1915.0 + 0 ENSG00000142252.10 protein_coding GEMIN7 2 OTTHUMG00000181768.1 overlapping_locus +34393 chr19 HAVANA gene 45128569 45129030 462.0 + 0 ENSG00000267346.1 processed_pseudogene EIF5AP3 1 OTTHUMG00000181771.1 pseudo_consens,overlapping_locus +34394 chr19 HAVANA gene 45135993 45136977 472.0 - 0 ENSG00000267044.1 antisense AC005757.1 2 OTTHUMG00000181773.1 +34395 chr19 HAVANA gene 45091396 45148077 7823.0 + 0 ENSG00000104866.10 protein_coding PPP1R37 1 OTTHUMG00000168143.4 overlapping_locus +34396 chr19 HAVANA gene 45149750 45158737 4310.0 - 0 ENSG00000179846.9 protein_coding NKPD1 2 OTTHUMG00000160521.4 +34397 chr19 HAVANA gene 45162928 45178237 933.0 - 0 ENSG00000007255.10 protein_coding TRAPPC6A 1 OTTHUMG00000181775.1 +34398 chr19 HAVANA gene 45178745 45181801 2666.0 + 0 ENSG00000189114.6 protein_coding BLOC1S3 1 OTTHUMG00000181776.1 overlapping_locus +34399 chr19 HAVANA gene 45179822 45202444 550.0 + 0 ENSG00000267545.1 protein_coding AC005779.2 2 OTTHUMG00000181777.1 overlapping_locus +34400 chr19 HAVANA gene 45187388 45216933 540.0 + 0 ENSG00000266958.1 antisense AC005779.1 1 OTTHUMG00000181779.1 overlapping_locus +34401 chr19 HAVANA gene 45212621 45245431 2964.0 - 0 ENSG00000283632.2 protein_coding EXOC3L2 2 OTTHUMG00000155018.2 +34402 chr19 HAVANA gene 45079288 45305283 6668.0 + 0 ENSG00000007047.14 protein_coding MARK4 2 OTTHUMG00000181769.2 overlapping_locus +34403 chr19 HAVANA gene 45306414 45322977 1657.0 - 0 ENSG00000104879.4 protein_coding CKM 2 OTTHUMG00000181782.2 +34404 chr19 HAVANA gene 45332698 45333124 427.0 - 0 ENSG00000242675.1 processed_pseudogene RPS16P9 1 OTTHUMG00000158202.1 pseudo_consens +34405 chr19 HAVANA gene 45333434 45351520 3654.0 + 0 ENSG00000104892.16 protein_coding KLC3 1 OTTHUMG00000143722.4 +34406 chr19 HAVANA gene 45349837 45370918 6450.0 - 0 ENSG00000104884.15 protein_coding ERCC2 2 OTTHUMG00000048190.6 +34407 chr19 HAVANA gene 45379634 45406349 5032.0 - 0 ENSG00000104881.15 protein_coding PPP1R13L 2 OTTHUMG00000181784.2 +34408 chr19 HAVANA gene 45406209 45410766 3661.0 + 0 ENSG00000117877.10 protein_coding CD3EAP 2 OTTHUMG00000182120.2 +34409 chr19 ENSEMBL gene 45436654 45436704 51.0 + 0 ENSG00000275726.1 miRNA MIR6088 3 +34410 chr19 HAVANA gene 45467995 45475179 5553.0 + 0 ENSG00000125740.13 protein_coding FOSB 1 OTTHUMG00000182122.2 +34411 chr19 HAVANA gene 45407333 45478828 5576.0 - 0 ENSG00000012061.15 protein_coding ERCC1 1 OTTHUMG00000182121.2 +34412 chr19 HAVANA gene 45485289 45497061 3238.0 - 0 ENSG00000125744.11 protein_coding RTN2 2 OTTHUMG00000182123.1 +34413 chr19 HAVANA gene 45488777 45502510 2571.0 + 0 ENSG00000213889.10 protein_coding PPM1N 1 OTTHUMG00000140397.7 +34414 chr19 HAVANA gene 45506579 45526983 3601.0 + 0 ENSG00000125753.13 protein_coding VASP 2 OTTHUMG00000182124.2 +34415 chr19 HAVANA gene 45589764 45602208 3145.0 - 0 ENSG00000177464.4 protein_coding GPR4 2 OTTHUMG00000182126.1 overlapping_locus +34416 chr19 HAVANA gene 45527427 45602212 9999.0 - 0 ENSG00000125741.4 protein_coding OPA3 2 OTTHUMG00000182125.1 overlapping_locus +34417 chr19 ENSEMBL gene 45638994 45639087 94.0 - 0 ENSG00000284544.1 miRNA MIR330 3 +34418 chr19 HAVANA gene 45641494 45642840 1235.0 + 0 ENSG00000267757.4 processed_transcript EML2-AS1 2 OTTHUMG00000182128.1 +34419 chr19 HAVANA gene 45606994 45645629 8224.0 - 0 ENSG00000125746.16 protein_coding EML2 1 OTTHUMG00000182127.2 ncRNA_host +34420 chr19 ENSEMBL gene 45651510 45651805 296.0 + 0 ENSG00000241226.3 misc_RNA RN7SL836P 3 +34421 chr19 ENSEMBL gene 45674932 45675008 77.0 - 0 ENSG00000283212.1 miRNA MIR642B 3 +34422 chr19 ENSEMBL gene 45674928 45675024 97.0 + 0 ENSG00000207773.1 miRNA MIR642A 3 +34423 chr19 HAVANA gene 45668244 45683724 4736.0 + 0 ENSG00000010310.8 protein_coding GIPR 1 OTTHUMG00000182129.4 ncRNA_host +34424 chr19 HAVANA gene 45687454 45692569 1608.0 - 0 ENSG00000125743.10 protein_coding SNRPD2 1 OTTHUMG00000182130.2 +34425 chr19 HAVANA gene 45692483 45703989 2396.0 + 0 ENSG00000011478.11 protein_coding QPCTL 2 OTTHUMG00000182131.1 +34426 chr19 HAVANA gene 45714387 45717381 2995.0 - 0 ENSG00000279407.1 TEC AC007191.1 2 OTTHUMG00000182133.1 overlapping_locus +34427 chr19 HAVANA gene 45710629 45730904 3535.0 - 0 ENSG00000177051.5 protein_coding FBXO46 2 OTTHUMG00000182132.3 overlapping_locus +34428 chr19 HAVANA gene 45733251 45764534 2749.0 + 0 ENSG00000237452.2 protein_coding BHMG1 1 OTTHUMG00000156178.3 +34429 chr19 HAVANA gene 45764785 45769226 3556.0 - 0 ENSG00000177045.8 protein_coding SIX5 1 OTTHUMG00000172208.4 +34430 chr19 HAVANA gene 45764785 45769806 2600.0 + 0 ENSG00000259605.3 processed_transcript AC074212.1 2 OTTHUMG00000172207.4 overlapping_locus +34431 chr19 HAVANA gene 45767796 45772504 1027.0 + 0 ENSG00000267395.5 antisense DM1-AS 2 OTTHUMG00000182333.2 overlapping_locus +34432 chr19 HAVANA gene 45769717 45782552 5807.0 - 0 ENSG00000104936.17 protein_coding DMPK 1 OTTHUMG00000182334.3 overlapping_locus +34433 chr19 HAVANA gene 45779437 45785973 859.0 - 0 ENSG00000268434.5 protein_coding AC011530.1 2 OTTHUMG00000182481.2 overlapping_locus +34434 chr19 HAVANA gene 45782947 45792802 5658.0 - 0 ENSG00000185800.11 protein_coding DMWD 1 OTTHUMG00000169044.3 overlapping_locus +34435 chr19 HAVANA gene 45795710 45815319 2547.0 - 0 ENSG00000104941.7 protein_coding RSPH6A 1 OTTHUMG00000182482.1 +34436 chr19 HAVANA gene 45830164 45831108 764.0 + 0 ENSG00000269148.1 antisense AC092301.1 2 OTTHUMG00000182483.1 +34437 chr19 HAVANA gene 45815410 45863290 10628.0 - 0 ENSG00000125755.18 protein_coding SYMPK 2 OTTHUMG00000150151.5 +34438 chr19 HAVANA gene 45863989 45873797 2192.0 + 0 ENSG00000170608.2 protein_coding FOXA3 1 OTTHUMG00000182484.3 +34439 chr19 HAVANA gene 45883607 45886170 2564.0 - 0 ENSG00000170604.4 protein_coding IRF2BP1 2 OTTHUMG00000182485.1 +34440 chr19 HAVANA gene 45890020 45902604 1890.0 - 0 ENSG00000176182.5 protein_coding MYPOP 2 OTTHUMG00000182486.1 +34441 chr19 HAVANA gene 45913214 45914870 1657.0 - 0 ENSG00000188425.3 protein_coding NANOS2 2 OTTHUMG00000182487.1 +34442 chr19 HAVANA gene 45933734 45973546 8684.0 - 0 ENSG00000104967.6 protein_coding NOVA2 1 OTTHUMG00000177499.4 +34443 chr19 ENSEMBL gene 46018932 46019049 118.0 + 0 ENSG00000211580.1 miRNA MIR769 3 +34444 chr19 HAVANA gene 45995461 46021318 2588.0 + 0 ENSG00000104983.8 protein_coding CCDC61 1 OTTHUMG00000182488.1 ncRNA_host +34445 chr19 HAVANA gene 46019153 46023065 720.0 - 0 ENSG00000008438.4 protein_coding PGLYRP1 2 OTTHUMG00000182489.1 +34446 chr19 HAVANA gene 46027654 46030161 775.0 + 0 ENSG00000268401.1 lincRNA AC007785.3 2 OTTHUMG00000182490.1 +34447 chr19 HAVANA gene 46039748 46077118 3725.0 - 0 ENSG00000204869.8 protein_coding IGFL4 2 OTTHUMG00000182491.1 +34448 chr19 HAVANA gene 46111079 46113863 1916.0 - 0 ENSG00000268053.1 processed_pseudogene AC007785.2 1 OTTHUMG00000182494.1 pseudo_consens +34449 chr19 HAVANA gene 46120071 46124674 662.0 - 0 ENSG00000188624.2 protein_coding IGFL3 2 OTTHUMG00000172904.1 +34450 chr19 HAVANA gene 46136746 46137547 802.0 - 0 ENSG00000259339.2 processed_pseudogene TGIF1P1 1 OTTHUMG00000158208.3 pseudo_consens +34451 chr19 HAVANA gene 46143106 46161299 2426.0 + 0 ENSG00000204866.8 protein_coding IGFL2 2 OTTHUMG00000182492.1 overlapping_locus +34452 chr19 HAVANA gene 46163893 46180647 849.0 - 0 ENSG00000269729.1 lincRNA AC006262.2 2 OTTHUMG00000182495.1 +34453 chr19 HAVANA gene 46101122 46196218 332.0 + 0 ENSG00000267922.1 lincRNA AC007785.1 2 OTTHUMG00000182493.1 overlapping_locus +34454 chr19 HAVANA gene 46196238 46197323 360.0 + 0 ENSG00000268879.1 unprocessed_pseudogene IGFL1P1 2 OTTHUMG00000182497.1 +34455 chr19 HAVANA gene 46189166 46203083 1751.0 - 0 ENSG00000268621.5 lincRNA IGFL2-AS1 2 OTTHUMG00000182496.1 +34456 chr19 HAVANA gene 46203426 46214837 5911.0 + 0 ENSG00000268460.1 processed_transcript AC006262.1 2 OTTHUMG00000182498.1 +34457 chr19 HAVANA gene 46219423 46219920 498.0 + 0 ENSG00000269637.1 processed_pseudogene RPL12P41 1 OTTHUMG00000182499.1 pseudo_consens +34458 chr19 HAVANA gene 46228964 46230388 258.0 - 0 ENSG00000269745.1 antisense AC006262.3 2 OTTHUMG00000182500.1 +34459 chr19 HAVANA gene 46229752 46231243 769.0 + 0 ENSG00000188293.5 protein_coding IGFL1 2 OTTHUMG00000182501.1 +34460 chr19 HAVANA gene 46249394 46250163 286.0 - 0 ENSG00000277748.1 unprocessed_pseudogene AC006262.4 2 OTTHUMG00000188012.1 +34461 chr19 HAVANA gene 46260420 46260858 330.0 - 0 ENSG00000268238.1 unprocessed_pseudogene IGFL1P2 2 OTTHUMG00000182502.1 +34462 chr19 ENSEMBL gene 46306470 46306577 108.0 - 0 ENSG00000199796.1 snRNA RNU6-924P 3 +34463 chr19 HAVANA gene 46320197 46340004 472.0 - 0 ENSG00000269124.1 antisense AC007193.2 2 OTTHUMG00000183422.1 +34464 chr19 HAVANA gene 46297046 46343433 8371.0 + 0 ENSG00000124440.15 protein_coding HIF3A 2 OTTHUMG00000141296.6 +34465 chr19 HAVANA gene 46382492 46383169 448.0 - 0 ENSG00000268810.1 antisense AC007193.1 2 OTTHUMG00000183423.1 +34466 chr19 HAVANA gene 46390515 46390852 188.0 - 0 ENSG00000269151.1 antisense AC007193.3 2 OTTHUMG00000183424.1 +34467 chr19 HAVANA gene 46346994 46392981 7059.0 + 0 ENSG00000011485.14 protein_coding PPP5C 1 OTTHUMG00000134287.5 +34468 chr19 HAVANA gene 46410329 46413662 3334.0 - 0 ENSG00000169515.6 protein_coding CCDC8 2 OTTHUMG00000162348.3 +34469 chr19 HAVANA gene 46424697 46428951 4255.0 - 0 ENSG00000277531.2 protein_coding PNMA8C 2 OTTHUMG00000186767.3 +34470 chr19 HAVANA gene 46466491 46471563 3696.0 - 0 ENSG00000182013.17 protein_coding PNMA8A 2 OTTHUMG00000169421.2 +34471 chr19 HAVANA gene 46486906 46496498 5506.0 - 0 ENSG00000204851.6 protein_coding PNMA8B 2 OTTHUMG00000183426.2 overlapping_locus +34472 chr19 HAVANA gene 46494508 46496502 1995.0 + 0 ENSG00000204850.4 antisense AC011484.1 2 OTTHUMG00000186768.2 +34473 chr19 HAVANA gene 46533669 46534351 683.0 + 0 ENSG00000278797.1 unprocessed_pseudogene AC011551.1 2 OTTHUMG00000188014.1 +34474 chr19 HAVANA gene 46558641 46559642 1002.0 + 0 ENSG00000249210.1 processed_pseudogene GAPDHP38 1 OTTHUMG00000160067.1 pseudo_consens +34475 chr19 HAVANA gene 46547056 46600861 845.0 - 0 ENSG00000268423.4 sense_intronic AC093503.1 2 OTTHUMG00000183427.1 overlapping_locus +34476 chr19 HAVANA gene 46480796 46601200 5703.0 - 0 ENSG00000230510.6 protein_coding PPP5D1 1 OTTHUMG00000183425.2 overlapping_locus +34477 chr19 HAVANA gene 46609277 46610779 296.0 - 0 ENSG00000269292.1 antisense AC093503.2 2 OTTHUMG00000183428.2 +34478 chr19 HAVANA gene 46601074 46610793 3667.0 + 0 ENSG00000160014.16 protein_coding CALM3 2 OTTHUMG00000133517.2 +34479 chr19 HAVANA gene 46620468 46625118 3546.0 - 0 ENSG00000160013.8 protein_coding PTGIR 1 OTTHUMG00000183429.1 +34480 chr19 HAVANA gene 46634076 46634685 216.0 - 0 ENSG00000167414.4 protein_coding GNG8 2 OTTHUMG00000183430.2 +34481 chr19 HAVANA gene 46636810 46639161 2352.0 - 0 ENSG00000279161.1 TEC AC093503.3 2 OTTHUMG00000175773.1 +34482 chr19 HAVANA gene 46647612 46661138 5361.0 - 0 ENSG00000197380.10 protein_coding DACT3 1 OTTHUMG00000153070.3 +34483 chr19 HAVANA gene 46660364 46677447 1825.0 + 0 ENSG00000245598.6 antisense DACT3-AS1 1 OTTHUMG00000165987.1 +34484 chr19 ENSEMBL gene 46688797 46689068 272.0 - 0 ENSG00000243560.3 misc_RNA RN7SL364P 3 +34485 chr19 ENSEMBL gene 46709293 46709345 53.0 - 0 ENSG00000211513.5 miRNA MIR320E 3 +34486 chr19 HAVANA gene 46674275 46717127 5446.0 - 0 ENSG00000105287.12 protein_coding PRKD2 1 OTTHUMG00000183431.4 ncRNA_host +34487 chr19 HAVANA gene 46728603 46732700 562.0 + 0 ENSG00000269487.1 antisense AC008635.1 2 OTTHUMG00000183433.1 +34488 chr19 ENSEMBL gene 46736312 46736419 108.0 + 0 ENSG00000222614.1 misc_RNA RF00019 3 +34489 chr19 HAVANA gene 46719507 46746994 7641.0 - 0 ENSG00000090372.14 protein_coding STRN4 1 OTTHUMG00000183432.5 +34490 chr19 HAVANA gene 46746046 46776988 5081.0 + 0 ENSG00000181027.10 protein_coding FKRP 2 OTTHUMG00000183177.3 +34491 chr19 HAVANA gene 46774883 46788594 3332.0 - 0 ENSG00000105281.12 protein_coding SLC1A5 2 OTTHUMG00000183434.3 +34492 chr19 HAVANA gene 46787815 46789043 1229.0 + 0 ENSG00000275719.1 antisense AC008622.2 2 OTTHUMG00000186769.1 +34493 chr19 HAVANA gene 46809583 46810182 600.0 + 0 ENSG00000275862.1 processed_pseudogene AC008622.3 1 OTTHUMG00000188023.1 pseudo_consens +34494 chr19 HAVANA gene 46809585 46810183 599.0 + 0 ENSG00000269576.1 processed_pseudogene HNRNPMP2 1 OTTHUMG00000183435.1 pseudo_consens +34495 chr19 HAVANA gene 46826895 46828440 284.0 - 0 ENSG00000269014.1 processed_pseudogene AC008622.1 2 OTTHUMG00000183436.1 +34496 chr19 HAVANA gene 46838136 46850992 1704.0 - 0 ENSG00000042753.11 protein_coding AP2S1 1 OTTHUMG00000183437.2 +34497 chr19 HAVANA gene 46946535 46949156 2622.0 + 0 ENSG00000279948.1 TEC AC008895.1 2 OTTHUMG00000183439.1 overlapping_locus +34498 chr19 HAVANA gene 46918676 47005077 11245.0 + 0 ENSG00000160007.18 protein_coding ARHGAP35 2 OTTHUMG00000183438.1 overlapping_locus +34499 chr19 HAVANA gene 47019820 47045775 2582.0 + 0 ENSG00000130751.9 protein_coding NPAS1 1 OTTHUMG00000183440.1 +34500 chr19 HAVANA gene 47045907 47048630 663.0 - 0 ENSG00000130748.6 protein_coding TMEM160 2 OTTHUMG00000183441.1 +34501 chr19 HAVANA gene 47064187 47113752 6502.0 - 0 ENSG00000130749.9 protein_coding ZC3H4 1 OTTHUMG00000183442.1 +34502 chr19 HAVANA gene 47113274 47210636 3396.0 + 0 ENSG00000142230.11 protein_coding SAE1 1 OTTHUMG00000183464.3 +34503 chr19 ENSEMBL gene 47226944 47227019 76.0 - 0 ENSG00000284411.1 miRNA MIR3191 3 +34504 chr19 ENSEMBL gene 47226942 47227021 80.0 + 0 ENSG00000265134.1 miRNA MIR3190 3 +34505 chr19 HAVANA gene 47220822 47232766 3180.0 - 0 ENSG00000105327.17 protein_coding BBC3 2 OTTHUMG00000183489.2 ncRNA_host +34506 chr19 HAVANA gene 47255980 47273701 3845.0 + 0 ENSG00000105321.13 protein_coding CCDC9 2 OTTHUMG00000183503.3 +34507 chr19 HAVANA gene 47274453 47275707 1255.0 + 0 ENSG00000257704.3 protein_coding INAFM1 2 OTTHUMG00000170128.2 +34508 chr19 HAVANA gene 47290023 47322066 2951.0 + 0 ENSG00000197405.7 protein_coding C5AR1 2 OTTHUMG00000183504.3 +34509 chr19 HAVANA gene 47332147 47347327 6802.0 + 0 ENSG00000134830.5 protein_coding C5AR2 2 OTTHUMG00000183505.2 +34510 chr19 HAVANA gene 47349281 47382704 5696.0 + 0 ENSG00000134815.18 protein_coding DHX34 2 OTTHUMG00000149959.4 +34511 chr19 HAVANA gene 47403124 47419523 5122.0 - 0 ENSG00000105419.17 protein_coding MEIS3 1 OTTHUMG00000172280.3 +34512 chr19 HAVANA gene 47428017 47472168 5546.0 - 0 ENSG00000118160.13 protein_coding SLC8A2 1 OTTHUMG00000183529.4 +34513 chr19 HAVANA gene 47475144 47484268 2124.0 - 0 ENSG00000118162.13 protein_coding KPTN 2 OTTHUMG00000183443.4 +34514 chr19 HAVANA gene 47487638 47489519 1882.0 - 0 ENSG00000279861.1 TEC AC073548.1 2 OTTHUMG00000183421.1 overlapping_locus +34515 chr19 HAVANA gene 47484282 47501597 1894.0 + 0 ENSG00000268061.5 antisense NAPA-AS1 2 OTTHUMG00000183420.2 +34516 chr19 HAVANA gene 47487637 47515240 5839.0 - 0 ENSG00000105402.7 protein_coding NAPA 2 OTTHUMG00000183294.3 overlapping_locus +34517 chr19 HAVANA gene 47520685 47555856 4655.0 - 0 ENSG00000118156.12 protein_coding ZNF541 1 OTTHUMG00000141262.3 +34518 chr19 ENSEMBL gene 47581023 47581321 299.0 + 0 ENSG00000276588.1 misc_RNA RN7SL322P 3 +34519 chr19 HAVANA gene 47607873 47608454 582.0 - 0 ENSG00000277383.1 antisense AC010331.1 2 OTTHUMG00000186770.1 +34520 chr19 HAVANA gene 47615699 47626395 547.0 - 0 ENSG00000269806.1 antisense BICRA-AS1 2 OTTHUMG00000183264.1 +34521 chr19 HAVANA gene 47661657 47663895 2239.0 - 0 ENSG00000278999.1 TEC AC008985.1 2 OTTHUMG00000183265.1 +34522 chr19 HAVANA gene 47608196 47703277 7507.0 + 0 ENSG00000063169.10 protein_coding BICRA 2 OTTHUMG00000183263.3 overlapping_locus +34523 chr19 HAVANA gene 47607524 47733098 344.0 + 0 ENSG00000268746.1 lincRNA AC010519.1 2 OTTHUMG00000183262.1 overlapping_locus +34524 chr19 HAVANA gene 47713343 47743134 3923.0 + 0 ENSG00000024422.11 protein_coding EHD2 2 OTTHUMG00000183266.1 overlapping_locus +34525 chr19 ENSEMBL gene 47755853 47755962 110.0 + 0 ENSG00000221803.1 snoRNA SNORD23 3 +34526 chr19 HAVANA gene 47745522 47757058 5341.0 + 0 ENSG00000105373.18 protein_coding NOP53 2 OTTHUMG00000183059.1 ncRNA_host +34527 chr19 HAVANA gene 47757036 47768840 540.0 - 0 ENSG00000269656.1 antisense NOP53-AS1 2 OTTHUMG00000183060.1 +34528 chr19 HAVANA gene 47778572 47784686 5261.0 + 0 ENSG00000178980.14 protein_coding SELENOW 2 OTTHUMG00000183061.2 +34529 chr19 HAVANA gene 47794467 47794890 424.0 - 0 ENSG00000213035.4 processed_pseudogene RPL23AP80 1 OTTHUMG00000158216.2 pseudo_consens +34530 chr19 HAVANA gene 47794650 47794920 271.0 + 0 ENSG00000271150.1 processed_pseudogene AC008745.1 2 OTTHUMG00000185249.1 +34531 chr19 HAVANA gene 47801243 47819051 2075.0 - 0 ENSG00000178928.8 protein_coding TPRX1 2 OTTHUMG00000170628.1 +34532 chr19 HAVANA gene 47819779 47843330 5991.0 + 0 ENSG00000105392.15 protein_coding CRX 2 OTTHUMG00000170610.10 overlapping_locus +34533 chr19 HAVANA gene 47860113 47861512 881.0 + 0 ENSG00000259009.4 unprocessed_pseudogene TPRX2P 2 OTTHUMG00000171165.4 +34534 chr19 HAVANA gene 47863483 47865341 710.0 - 0 ENSG00000259108.2 lincRNA LINC01595 2 OTTHUMG00000170611.2 +34535 chr19 HAVANA gene 47870466 47886397 1987.0 - 0 ENSG00000105398.3 protein_coding SULT2A1 2 OTTHUMG00000162469.2 +34536 chr19 HAVANA gene 47968046 47992170 654.0 - 0 ENSG00000188334.3 protein_coding BSPH1 2 OTTHUMG00000183137.1 +34537 chr19 HAVANA gene 47994651 48025153 1124.0 + 0 ENSG00000169393.8 protein_coding ELSPBP1 1 OTTHUMG00000183138.2 +34538 chr19 HAVANA gene 48029953 48044053 1501.0 - 0 ENSG00000105507.2 protein_coding CABP5 2 OTTHUMG00000183139.1 +34539 chr19 HAVANA gene 48061371 48064945 873.0 + 0 ENSG00000269420.5 antisense PLA2G4C-AS1 2 OTTHUMG00000183186.1 +34540 chr19 HAVANA gene 48047843 48110817 6613.0 - 0 ENSG00000105499.13 protein_coding PLA2G4C 2 OTTHUMG00000183185.2 +34541 chr19 HAVANA gene 48118432 48127706 1009.0 + 0 ENSG00000269534.5 antisense AC011466.3 2 OTTHUMG00000183188.1 +34542 chr19 HAVANA gene 48145908 48147413 359.0 + 0 ENSG00000269321.1 antisense AC011466.2 2 OTTHUMG00000183189.1 +34543 chr19 HAVANA gene 48115445 48170603 6576.0 - 0 ENSG00000105486.13 protein_coding LIG1 2 OTTHUMG00000183187.2 +34544 chr19 HAVANA gene 48170692 48197620 3751.0 + 0 ENSG00000185453.12 protein_coding ZSWIM9 2 OTTHUMG00000183190.1 overlapping_locus +34545 chr19 HAVANA gene 48198107 48199720 1614.0 - 0 ENSG00000280353.1 TEC AC011466.4 2 OTTHUMG00000183192.1 overlapping_locus +34546 chr19 HAVANA gene 48204083 48213154 566.0 + 0 ENSG00000268583.1 antisense AC011466.1 2 OTTHUMG00000183193.1 overlapping_locus +34547 chr19 HAVANA gene 48180770 48255946 12912.0 - 0 ENSG00000105483.17 protein_coding CARD8 2 OTTHUMG00000165047.8 overlapping_locus +34548 chr19 HAVANA gene 48255675 48258199 1969.0 + 0 ENSG00000268001.1 antisense CARD8-AS1 2 OTTHUMG00000183194.1 overlapping_locus +34549 chr19 HAVANA gene 48262900 48271283 437.0 - 0 ENSG00000268186.1 lincRNA ZNF114-AS1 2 OTTHUMG00000183195.1 +34550 chr19 HAVANA gene 48270102 48287608 2993.0 + 0 ENSG00000178150.9 protein_coding ZNF114 2 OTTHUMG00000183191.2 overlapping_locus +34551 chr19 HAVANA gene 48296457 48321894 4299.0 - 0 ENSG00000105479.15 protein_coding CCDC114 2 OTTHUMG00000156161.2 +34552 chr19 HAVANA gene 48321509 48330553 1667.0 + 0 ENSG00000142227.10 protein_coding EMP3 1 OTTHUMG00000183196.2 +34553 chr19 HAVANA gene 48332356 48364237 3701.0 - 0 ENSG00000161558.10 protein_coding TMEM143 1 OTTHUMG00000183197.3 +34554 chr19 HAVANA gene 48364395 48376376 1240.0 + 0 ENSG00000105467.8 protein_coding SYNGR4 1 OTTHUMG00000183214.2 +34555 chr19 HAVANA gene 48382570 48391553 2251.0 - 0 ENSG00000105438.8 protein_coding KDELR1 1 OTTHUMG00000183215.2 +34556 chr19 HAVANA gene 48394875 48444931 5093.0 + 0 ENSG00000105464.3 protein_coding GRIN2D 2 OTTHUMG00000183304.1 +34557 chr19 HAVANA gene 48445773 48457022 5763.0 + 0 ENSG00000105447.12 protein_coding GRWD1 1 OTTHUMG00000183305.2 overlapping_locus +34558 chr19 HAVANA gene 48455509 48466980 4340.0 + 0 ENSG00000182324.6 protein_coding KCNJ14 2 OTTHUMG00000183307.2 overlapping_locus +34559 chr19 HAVANA gene 48465593 48469693 1398.0 - 0 ENSG00000268530.5 antisense AC008403.2 2 OTTHUMG00000183308.1 +34560 chr19 HAVANA gene 48465837 48472431 443.0 + 0 ENSG00000268465.1 protein_coding AC008403.1 1 OTTHUMG00000183309.2 overlapping_locus +34561 chr19 HAVANA gene 48469032 48482314 9509.0 + 0 ENSG00000105443.14 protein_coding CYTH2 1 OTTHUMG00000150245.6 overlapping_locus +34562 chr19 HAVANA gene 48513207 48513660 454.0 - 0 ENSG00000269814.1 lincRNA AC008403.3 2 OTTHUMG00000183313.1 +34563 chr19 HAVANA gene 48485271 48513935 5667.0 - 0 ENSG00000142235.9 protein_coding LMTK3 2 OTTHUMG00000183312.2 +34564 chr19 HAVANA gene 48552075 48599425 2822.0 + 0 ENSG00000088002.11 protein_coding SULT2B1 2 OTTHUMG00000183314.1 +34565 chr19 HAVANA gene 48606743 48607714 972.0 + 0 ENSG00000177202.2 protein_coding SPACA4 2 OTTHUMG00000183316.1 +34566 chr19 HAVANA gene 48600810 48614854 2529.0 - 0 ENSG00000105523.3 protein_coding FAM83E 2 OTTHUMG00000183315.2 +34567 chr19 HAVANA gene 48615328 48619536 4209.0 - 0 ENSG00000063177.12 protein_coding RPL18 1 OTTHUMG00000169760.4 overlapping_locus +34568 chr19 HAVANA gene 48619272 48624132 1330.0 - 0 ENSG00000268093.1 antisense AC022154.1 2 OTTHUMG00000183317.1 overlapping_locus +34569 chr19 HAVANA gene 48619291 48630717 6009.0 + 0 ENSG00000063176.15 protein_coding SPHK2 1 OTTHUMG00000183318.3 +34570 chr19 HAVANA gene 48630030 48637438 6544.0 - 0 ENSG00000105516.10 protein_coding DBP 1 OTTHUMG00000183319.1 +34571 chr19 HAVANA gene 48637942 48646312 2075.0 - 0 ENSG00000063180.8 protein_coding CA11 2 OTTHUMG00000183320.1 +34572 chr19 HAVANA gene 48661407 48673081 3115.0 - 0 ENSG00000142233.11 protein_coding NTN5 1 OTTHUMG00000183321.2 +34573 chr19 HAVANA gene 48638071 48682245 2634.0 + 0 ENSG00000232871.8 transcribed_unitary_pseudogene SEC1P 2 OTTHUMG00000154617.2 +34574 chr19 HAVANA gene 48695971 48705950 3380.0 + 0 ENSG00000176920.11 protein_coding FUT2 2 OTTHUMG00000164427.5 +34575 chr19 HAVANA gene 48712742 48719721 2265.0 - 0 ENSG00000176909.11 protein_coding MAMSTR 2 OTTHUMG00000183322.3 +34576 chr19 HAVANA gene 48720587 48740721 4149.0 - 0 ENSG00000105538.9 protein_coding RASIP1 1 OTTHUMG00000183323.2 +34577 chr19 HAVANA gene 48740852 48746909 3415.0 - 0 ENSG00000182264.8 protein_coding IZUMO1 2 OTTHUMG00000183324.3 +34578 chr19 HAVANA gene 48748011 48755390 4343.0 - 0 ENSG00000174951.11 protein_coding FUT1 2 OTTHUMG00000183325.3 +34579 chr19 HAVANA gene 48755559 48758333 1315.0 + 0 ENSG00000105550.9 protein_coding FGF21 2 OTTHUMG00000183326.2 +34580 chr19 ENSEMBL gene 48793152 48793258 107.0 - 0 ENSG00000206758.1 snRNA RNU6-317P 3 +34581 chr19 HAVANA gene 48795062 48811029 4553.0 - 0 ENSG00000105552.14 protein_coding BCAT2 1 OTTHUMG00000183327.3 +34582 chr19 HAVANA gene 48813017 48836678 1281.0 - 0 ENSG00000087076.8 protein_coding HSD17B14 1 OTTHUMG00000183328.1 +34583 chr19 HAVANA gene 48837097 48868632 3851.0 - 0 ENSG00000105559.11 protein_coding PLEKHA4 1 OTTHUMG00000183329.3 +34584 chr19 HAVANA gene 48872392 48876057 3093.0 + 0 ENSG00000087074.7 protein_coding PPP1R15A 2 OTTHUMG00000183330.2 +34585 chr19 HAVANA gene 48880965 48898733 2240.0 - 0 ENSG00000104804.7 protein_coding TULP2 1 OTTHUMG00000164406.2 +34586 chr19 HAVANA gene 48910930 48918891 433.0 - 0 ENSG00000235191.1 antisense NUCB1-AS1 1 OTTHUMG00000152526.1 +34587 chr19 HAVANA gene 48900050 48923372 3937.0 + 0 ENSG00000104805.15 protein_coding NUCB1 2 OTTHUMG00000152514.4 +34588 chr19 HAVANA gene 48926171 48926444 274.0 + 0 ENSG00000260366.1 sense_overlapping AC026803.1 2 OTTHUMG00000175774.1 +34589 chr19 HAVANA gene 48933682 48944969 1081.0 + 0 ENSG00000104808.7 protein_coding DHDH 1 OTTHUMG00000165029.1 +34590 chr19 HAVANA gene 48954815 48961798 2587.0 + 0 ENSG00000087088.19 protein_coding BAX 2 OTTHUMG00000160476.3 +34591 chr19 HAVANA gene 48963975 48965158 946.0 + 0 ENSG00000267898.1 lincRNA AC026803.2 2 OTTHUMG00000183331.1 +34592 chr19 HAVANA gene 48965301 48966878 878.0 + 0 ENSG00000087086.14 protein_coding FTL 2 OTTHUMG00000183332.1 +34593 chr19 HAVANA gene 48968125 48993310 4246.0 - 0 ENSG00000104812.14 protein_coding GYS1 1 OTTHUMG00000150723.4 +34594 chr19 ENSEMBL gene 49009906 49009972 67.0 + 0 ENSG00000273898.1 miRNA MIR6798 3 +34595 chr19 HAVANA gene 48993448 49015995 3670.0 + 0 ENSG00000183207.13 protein_coding RUVBL2 2 OTTHUMG00000183333.1 ncRNA_host +34596 chr19 HAVANA gene 49015980 49017091 630.0 - 0 ENSG00000104826.13 protein_coding LHB 2 OTTHUMG00000183334.2 +34597 chr19 HAVANA gene 49017496 49020523 1756.0 - 0 ENSG00000268655.2 protein_coding AC008687.4 2 OTTHUMG00000183335.2 +34598 chr19 HAVANA gene 49022869 49024333 877.0 - 0 ENSG00000104827.12 protein_coding CGB3 2 OTTHUMG00000180605.2 overlapping_locus +34599 chr19 HAVANA gene 49025461 49026020 560.0 - 0 ENSG00000267019.1 unprocessed_pseudogene NTF6A 2 OTTHUMG00000180607.1 overlapping_locus +34600 chr19 HAVANA gene 49029726 49030341 616.0 + 0 ENSG00000267099.1 unprocessed_pseudogene NTF6G 2 OTTHUMG00000180608.1 +34601 chr19 HAVANA gene 49031912 49033238 859.0 + 0 ENSG00000104818.14 protein_coding CGB2 2 OTTHUMG00000150185.3 +34602 chr19 HAVANA gene 49035610 49036895 829.0 - 0 ENSG00000267631.4 protein_coding CGB1 2 OTTHUMG00000150186.6 overlapping_locus +34603 chr19 HAVANA gene 49022953 49036895 786.0 - 0 ENSG00000267335.2 protein_coding AC008687.1 2 OTTHUMG00000180606.4 overlapping_locus +34604 chr19 HAVANA gene 49038479 49039038 560.0 - 0 ENSG00000267685.2 unprocessed_pseudogene NTF6B 2 OTTHUMG00000180623.2 +34605 chr19 HAVANA gene 49042174 49042731 558.0 + 0 ENSG00000268669.1 unprocessed_pseudogene AC008687.5 2 OTTHUMG00000183336.1 +34606 chr19 HAVANA gene 49043884 49045311 841.0 + 0 ENSG00000189052.6 protein_coding CGB5 2 OTTHUMG00000183337.1 +34607 chr19 HAVANA gene 49047638 49049106 882.0 - 0 ENSG00000213030.5 protein_coding CGB8 2 OTTHUMG00000180609.1 +34608 chr19 HAVANA gene 49050217 49050846 630.0 - 0 ENSG00000269706.1 unprocessed_pseudogene AC008687.6 2 OTTHUMG00000183338.1 +34609 chr19 HAVANA gene 49056088 49058761 1471.0 - 0 ENSG00000283251.1 transcribed_unprocessed_pseudogene AC008687.7 2 OTTHUMG00000183340.8 overlapping_locus +34610 chr19 HAVANA gene 49054275 49058860 3386.0 - 0 ENSG00000196337.11 protein_coding CGB7 2 OTTHUMG00000183339.1 overlapping_locus +34611 chr19 HAVANA gene 49060613 49061132 520.0 + 0 ENSG00000268108.1 antisense AC008687.2 2 OTTHUMG00000183341.1 +34612 chr19 HAVANA gene 49064259 49064856 598.0 + 0 ENSG00000268287.1 lincRNA AC008687.3 2 OTTHUMG00000183342.1 +34613 chr19 HAVANA gene 49061066 49065054 1469.0 - 0 ENSG00000225950.8 protein_coding NTF4 2 OTTHUMG00000191728.1 overlapping_locus +34614 chr19 HAVANA gene 49055793 49065076 1748.0 - 0 ENSG00000283663.1 protein_coding AC008687.8 2 OTTHUMG00000191727.5 overlapping_locus +34615 chr19 HAVANA gene 49067418 49072941 4372.0 - 0 ENSG00000104848.1 protein_coding KCNA7 2 OTTHUMG00000183343.1 +34616 chr19 ENSEMBL gene 49081332 49081630 299.0 + 0 ENSG00000265675.2 misc_RNA RN7SL708P 3 +34617 chr19 HAVANA gene 49085419 49108605 4684.0 + 0 ENSG00000104852.14 protein_coding SNRNP70 2 OTTHUMG00000183344.2 +34618 chr19 HAVANA gene 49114324 49118460 1753.0 + 0 ENSG00000104863.11 protein_coding LIN7B 1 OTTHUMG00000134288.3 +34619 chr19 HAVANA gene 49118397 49119140 744.0 - 0 ENSG00000221916.3 protein_coding C19orf73 2 OTTHUMG00000183345.1 +34620 chr19 HAVANA gene 49119389 49151026 6451.0 + 0 ENSG00000177380.13 protein_coding PPFIA3 2 OTTHUMG00000183213.2 +34621 chr19 HAVANA gene 49151198 49155424 2685.0 - 0 ENSG00000130528.11 protein_coding HRC 1 OTTHUMG00000183203.1 +34622 chr19 HAVANA gene 49157741 49211836 6604.0 + 0 ENSG00000130529.15 protein_coding TRPM4 1 OTTHUMG00000183184.6 +34623 chr19 HAVANA gene 49255472 49256102 369.0 - 0 ENSG00000269009.1 processed_pseudogene SLC6A21P 2 OTTHUMG00000183204.1 +34624 chr19 HAVANA gene 49275119 49275420 302.0 + 0 ENSG00000235555.1 processed_pseudogene SUMO1P4 1 OTTHUMG00000154914.1 pseudo_consens +34625 chr19 ENSEMBL gene 49308797 49308868 72.0 - 0 ENSG00000265407.1 miRNA MIR4324 3 +34626 chr19 HAVANA gene 49289638 49325225 3599.0 - 0 ENSG00000063127.15 protein_coding SLC6A16 1 OTTHUMG00000183179.3 ncRNA_host +34627 chr19 HAVANA gene 49331617 49340303 615.0 - 0 ENSG00000197813.5 lincRNA AC011450.1 2 OTTHUMG00000184009.1 +34628 chr19 HAVANA gene 49335171 49343335 4161.0 + 0 ENSG00000104894.11 protein_coding CD37 1 OTTHUMG00000183183.2 +34629 chr19 HAVANA gene 49356152 49357769 494.0 + 0 ENSG00000268157.1 antisense AC010524.1 2 OTTHUMG00000183178.1 +34630 chr19 HAVANA gene 49340595 49362457 2980.0 - 0 ENSG00000074219.13 protein_coding TEAD2 1 OTTHUMG00000183174.3 +34631 chr19 HAVANA gene 49361783 49375116 1461.0 + 0 ENSG00000104901.6 protein_coding DKKL1 1 OTTHUMG00000183171.3 +34632 chr19 HAVANA gene 49368705 49388081 3263.0 - 0 ENSG00000268686.1 antisense AC010643.1 2 OTTHUMG00000183172.1 +34633 chr19 HAVANA gene 49388218 49417994 5624.0 + 0 ENSG00000161609.9 protein_coding CCDC155 1 OTTHUMG00000183170.4 +34634 chr19 HAVANA gene 49422414 49423441 459.0 - 0 ENSG00000142538.1 protein_coding PTH2 2 OTTHUMG00000183165.1 +34635 chr19 HAVANA gene 49423749 49428818 1876.0 + 0 ENSG00000261949.5 protein_coding GFY 2 OTTHUMG00000177824.2 +34636 chr19 HAVANA gene 49429401 49442360 6013.0 - 0 ENSG00000104888.9 protein_coding SLC17A7 1 OTTHUMG00000183166.3 +34637 chr19 HAVANA gene 49446298 49453497 3331.0 - 0 ENSG00000104872.10 protein_coding PIH1D1 2 OTTHUMG00000183167.3 +34638 chr19 HAVANA gene 49453169 49471048 4643.0 + 0 ENSG00000161618.9 protein_coding ALDH16A1 1 OTTHUMG00000183163.2 overlapping_locus +34639 chr19 HAVANA gene 49474207 49486231 2846.0 + 0 ENSG00000090554.12 protein_coding FLT3LG 1 OTTHUMG00000186490.1 overlapping_locus +34640 chr19 HAVANA gene 49462752 49486231 675.0 + 0 ENSG00000269469.1 protein_coding AC010619.1 2 OTTHUMG00000183164.1 overlapping_locus +34641 chr19 HAVANA gene 49474586 49487637 1421.0 + 0 ENSG00000273189.1 processed_transcript AC010619.2 2 OTTHUMG00000183157.2 overlapping_locus +34642 chr19 ENSEMBL gene 49489965 49490048 84.0 + 0 ENSG00000201675.1 snoRNA SNORD32A 3 +34643 chr19 ENSEMBL gene 49490615 49490699 85.0 + 0 ENSG00000199631.1 snoRNA SNORD33 3 +34644 chr19 ENSEMBL gene 49490904 49490974 71.0 + 0 ENSG00000202503.1 snoRNA SNORD34 3 +34645 chr19 ENSEMBL gene 49491175 49491260 86.0 + 0 ENSG00000200259.1 snoRNA SNORD35A 3 +34646 chr19 HAVANA gene 49487554 49492308 2369.0 + 0 ENSG00000142541.16 protein_coding RPL13A 2 OTTHUMG00000134289.4 ncRNA_host,overlapping_locus +34647 chr19 ENSEMBL gene 49497720 49497806 87.0 + 0 ENSG00000200530.1 snoRNA SNORD35B 3 +34648 chr19 HAVANA gene 49496365 49499689 1390.0 + 0 ENSG00000142534.6 protein_coding RPS11 2 OTTHUMG00000183156.3 ncRNA_host +34649 chr19 ENSEMBL gene 49500785 49500868 84.0 - 0 ENSG00000207782.3 miRNA MIR150 3 +34650 chr19 HAVANA gene 49502432 49502639 208.0 - 0 ENSG00000268681.1 processed_pseudogene COX6CP7 1 OTTHUMG00000183168.1 pseudo_consens +34651 chr19 HAVANA gene 49506816 49526333 4173.0 + 0 ENSG00000104870.12 protein_coding FCGRT 1 OTTHUMG00000183155.4 +34652 chr19 HAVANA gene 49527618 49546962 2093.0 + 0 ENSG00000142552.7 protein_coding RCN3 1 OTTHUMG00000183154.2 +34653 chr19 ENSEMBL gene 49566672 49566772 101.0 + 0 ENSG00000207073.1 misc_RNA RF00019 3 +34654 chr19 HAVANA gene 49555711 49590262 4248.0 - 0 ENSG00000142546.13 protein_coding NOSIP 2 OTTHUMG00000183169.3 +34655 chr19 HAVANA gene 49580646 49591015 1701.0 + 0 ENSG00000126460.10 protein_coding PRRG2 2 OTTHUMG00000183153.2 +34656 chr19 HAVANA gene 49625994 49626439 360.0 - 0 ENSG00000268636.1 antisense AC011495.2 2 OTTHUMG00000183276.1 +34657 chr19 HAVANA gene 49591643 49626439 7093.0 + 0 ENSG00000126464.13 protein_coding PRR12 1 OTTHUMG00000183275.2 +34658 chr19 HAVANA gene 49635292 49640201 1160.0 - 0 ENSG00000126458.3 protein_coding RRAS 2 OTTHUMG00000183247.1 +34659 chr19 HAVANA gene 49642125 49658642 4548.0 + 0 ENSG00000126461.14 protein_coding SCAF1 2 OTTHUMG00000183238.2 +34660 chr19 HAVANA gene 49659569 49665875 3794.0 - 0 ENSG00000126456.15 protein_coding IRF3 1 OTTHUMG00000183287.2 +34661 chr19 HAVANA gene 49665142 49673916 2216.0 + 0 ENSG00000126453.9 protein_coding BCL2L12 1 OTTHUMG00000183239.2 +34662 chr19 ENSEMBL gene 49682117 49682195 79.0 + 0 ENSG00000274306.1 miRNA MIR5088 3 +34663 chr19 HAVANA gene 49675786 49689029 4796.0 + 0 ENSG00000126457.21 protein_coding PRMT1 2 OTTHUMG00000167568.3 ncRNA_host,overlapping_locus +34664 chr19 HAVANA gene 49688853 49690573 427.0 - 0 ENSG00000268677.1 antisense AC011495.3 2 OTTHUMG00000183248.1 +34665 chr19 HAVANA gene 49688664 49690575 1718.0 + 0 ENSG00000224420.3 protein_coding ADM5 2 OTTHUMG00000183240.1 overlapping_locus +34666 chr19 HAVANA gene 49690898 49713731 5864.0 + 0 ENSG00000169169.14 protein_coding CPT1C 2 OTTHUMG00000183267.5 +34667 chr19 HAVANA gene 49719498 49720081 584.0 - 0 ENSG00000243829.1 processed_pseudogene AC011495.1 1 OTTHUMG00000158217.1 pseudo_consens +34668 chr19 HAVANA gene 49739753 49763330 2391.0 - 0 ENSG00000126467.10 protein_coding TSKS 2 OTTHUMG00000183249.2 +34669 chr19 ENSEMBL gene 49764524 49764630 107.0 - 0 ENSG00000206599.1 snRNA RNU6-841P 3 +34670 chr19 ENSEMBL gene 49791866 49791934 69.0 + 0 ENSG00000276270.1 miRNA MIR6799 3 +34671 chr19 HAVANA gene 49766968 49807113 8746.0 + 0 ENSG00000196961.12 protein_coding AP2A1 2 OTTHUMG00000183253.1 ncRNA_host +34672 chr19 HAVANA gene 49808933 49809738 520.0 + 0 ENSG00000269194.1 antisense AC006942.1 2 OTTHUMG00000183160.1 +34673 chr19 HAVANA gene 49806869 49817376 2950.0 - 0 ENSG00000010361.13 protein_coding FUZ 1 OTTHUMG00000167281.3 +34674 chr19 ENSEMBL gene 49832018 49832099 82.0 + 0 ENSG00000284114.1 miRNA MIR6800 3 +34675 chr19 HAVANA gene 49818279 49840383 7687.0 + 0 ENSG00000104973.17 protein_coding MED25 2 OTTHUMG00000183161.4 ncRNA_host +34676 chr19 HAVANA gene 49838639 49851676 4203.0 - 0 ENSG00000268006.1 antisense PTOV1-AS1 2 OTTHUMG00000183257.1 +34677 chr19 ENSEMBL gene 49854591 49854651 61.0 + 0 ENSG00000265954.1 miRNA MIR4749 3 +34678 chr19 HAVANA gene 49852887 49854967 484.0 - 0 ENSG00000268047.1 antisense AC018766.1 2 OTTHUMG00000183258.1 +34679 chr19 HAVANA gene 49856970 49859289 1023.0 - 0 ENSG00000269352.1 antisense PTOV1-AS2 2 OTTHUMG00000183259.1 +34680 chr19 HAVANA gene 49850735 49860744 5962.0 + 0 ENSG00000104960.15 protein_coding PTOV1 2 OTTHUMG00000183162.3 ncRNA_host +34681 chr19 HAVANA gene 49859882 49878351 4635.0 - 0 ENSG00000039650.11 protein_coding PNKP 2 OTTHUMG00000183261.10 +34682 chr19 HAVANA gene 49869033 49878459 5737.0 - 0 ENSG00000204673.10 protein_coding AKT1S1 2 OTTHUMG00000150246.5 +34683 chr19 ENSEMBL gene 49888175 49888230 56.0 + 0 ENSG00000284394.1 miRNA MIR4750 3 +34684 chr19 HAVANA gene 49877425 49888749 4745.0 + 0 ENSG00000104946.12 protein_coding TBC1D17 1 OTTHUMG00000183376.3 ncRNA_host +34685 chr19 HAVANA gene 49889654 49929539 2563.0 - 0 ENSG00000104951.15 protein_coding IL4I1 2 OTTHUMG00000183377.2 overlapping_locus +34686 chr19 HAVANA gene 49906825 49929763 6020.0 - 0 ENSG00000213024.11 protein_coding NUP62 2 OTTHUMG00000183077.4 overlapping_locus +34687 chr19 ENSEMBL gene 49933064 49933137 74.0 + 0 ENSG00000283842.1 miRNA MIR4751 3 +34688 chr19 HAVANA gene 49928702 49933935 2954.0 + 0 ENSG00000169136.10 protein_coding ATF5 2 OTTHUMG00000183065.4 ncRNA_host +34689 chr19 ENSEMBL gene 49949316 49949527 212.0 - 0 ENSG00000221125.2 snoRNA RF00012 3 +34690 chr19 HAVANA gene 49909501 49958391 575.0 - 0 ENSG00000269179.1 protein_coding AC011452.1 2 OTTHUMG00000183078.1 ncRNA_host,overlapping_locus +34691 chr19 HAVANA gene 49948985 49961172 3173.0 - 0 ENSG00000161640.15 protein_coding SIGLEC11 2 OTTHUMG00000157077.3 ncRNA_host,overlapping_locus +34692 chr19 HAVANA gene 49969673 49975814 2510.0 + 0 ENSG00000161643.12 transcribed_unprocessed_pseudogene SIGLEC16 2 OTTHUMG00000183074.1 +34693 chr19 ENSEMBL gene 50019019 50019320 302.0 + 0 ENSG00000276729.1 misc_RNA RF00017 3 +34694 chr19 HAVANA gene 49976467 50025946 9796.0 - 0 ENSG00000105053.10 protein_coding VRK3 1 OTTHUMG00000183053.4 +34695 chr19 HAVANA gene 50043196 50051062 711.0 - 0 ENSG00000269091.5 antisense AC010624.3 2 OTTHUMG00000183055.1 +34696 chr19 HAVANA gene 50025714 50053414 6898.0 + 0 ENSG00000142528.15 protein_coding ZNF473 1 OTTHUMG00000183054.2 overlapping_locus +34697 chr19 HAVANA gene 50058882 50060232 1351.0 - 0 ENSG00000269540.1 processed_pseudogene AC010624.4 2 OTTHUMG00000183152.1 +34698 chr19 HAVANA gene 50050589 50066793 1525.0 + 0 ENSG00000204666.3 sense_overlapping AC010624.1 2 OTTHUMG00000165525.1 overlapping_locus +34699 chr19 HAVANA gene 50075123 50075902 575.0 + 0 ENSG00000267890.1 lincRNA AC010624.2 2 OTTHUMG00000183149.1 +34700 chr19 HAVANA gene 50152548 50163195 1511.0 - 0 ENSG00000161652.12 protein_coding IZUMO2 2 OTTHUMG00000074063.2 +34701 chr19 ENSEMBL gene 50258443 50258722 280.0 + 0 ENSG00000276002.1 misc_RNA RF00017 3 +34702 chr19 HAVANA gene 50310022 50310539 457.0 - 0 ENSG00000267815.1 antisense AC008655.1 2 OTTHUMG00000183045.1 +34703 chr19 HAVANA gene 50188186 50310544 10392.0 + 0 ENSG00000105357.16 protein_coding MYH14 2 OTTHUMG00000183034.6 ncRNA_host +34704 chr19 HAVANA gene 50311937 50333515 6277.0 - 0 ENSG00000131398.13 protein_coding KCNC3 2 OTTHUMG00000044580.3 +34705 chr19 HAVANA gene 50333796 50344767 1915.0 - 0 ENSG00000131401.11 transcribed_unprocessed_pseudogene NAPSB 2 OTTHUMG00000166192.4 +34706 chr19 HAVANA gene 50358477 50365830 3581.0 - 0 ENSG00000131400.7 protein_coding NAPSA 2 OTTHUMG00000183035.2 +34707 chr19 HAVANA gene 50365880 50369331 304.0 - 0 ENSG00000269392.1 antisense AC008655.2 2 OTTHUMG00000183150.1 +34708 chr19 HAVANA gene 50329653 50382982 3753.0 + 0 ENSG00000131408.13 protein_coding NR1H2 2 OTTHUMG00000183036.6 +34709 chr19 HAVANA gene 50384204 50418016 4932.0 + 0 ENSG00000062822.13 protein_coding POLD1 1 OTTHUMG00000183037.9 overlapping_locus +34710 chr19 HAVANA gene 50415799 50428409 1265.0 + 0 ENSG00000142539.9 protein_coding AC020909.1 2 OTTHUMG00000183038.1 overlapping_locus +34711 chr19 HAVANA gene 50418938 50431313 4281.0 + 0 ENSG00000269404.6 protein_coding SPIB 1 OTTHUMG00000183039.2 overlapping_locus +34712 chr19 HAVANA gene 50432903 50466321 3708.0 + 0 ENSG00000086967.9 protein_coding MYBPC2 2 OTTHUMG00000183040.1 +34713 chr19 HAVANA gene 50466785 50476753 1566.0 - 0 ENSG00000142530.10 protein_coding FAM71E1 2 OTTHUMG00000183041.3 +34714 chr19 HAVANA gene 50480119 50483351 375.0 - 0 ENSG00000268854.1 antisense AC020909.3 2 OTTHUMG00000183043.1 +34715 chr19 HAVANA gene 50486810 50487638 626.0 - 0 ENSG00000268518.1 lincRNA AC020909.2 2 OTTHUMG00000183047.1 +34716 chr19 HAVANA gene 50476400 50490870 10748.0 + 0 ENSG00000161671.16 protein_coding EMC10 2 OTTHUMG00000183042.4 +34717 chr19 HAVANA gene 50505998 50511353 1514.0 - 0 ENSG00000161677.11 protein_coding JOSD2 1 OTTHUMG00000183062.2 +34718 chr19 HAVANA gene 50511600 50514690 1653.0 - 0 ENSG00000204653.9 protein_coding ASPDH 1 OTTHUMG00000183057.2 +34719 chr19 HAVANA gene 50555370 50557969 813.0 - 0 ENSG00000268231.1 sense_intronic AC008743.1 2 OTTHUMG00000183148.1 overlapping_locus +34720 chr19 HAVANA gene 50516892 50568045 3121.0 - 0 ENSG00000131409.12 protein_coding LRRC4B 2 OTTHUMG00000183063.2 overlapping_locus +34721 chr19 HAVANA gene 50621307 50639827 3790.0 - 0 ENSG00000213023.10 protein_coding SYT3 2 OTTHUMG00000183064.2 +34722 chr19 HAVANA gene 50649445 50659310 888.0 + 0 ENSG00000235034.6 protein_coding C19orf81 2 OTTHUMG00000154593.5 +34723 chr19 HAVANA gene 50661827 50719450 7567.0 - 0 ENSG00000161681.15 protein_coding SHANK1 1 OTTHUMG00000137380.4 +34724 chr19 HAVANA gene 50723329 50725718 1469.0 + 0 ENSG00000105472.12 protein_coding CLEC11A 2 OTTHUMG00000182866.1 +34725 chr19 HAVANA gene 50758382 50759192 811.0 + 0 ENSG00000269565.1 unprocessed_pseudogene GPR32P1 2 OTTHUMG00000182880.1 +34726 chr19 HAVANA gene 50770464 50771732 1269.0 + 0 ENSG00000142511.4 protein_coding GPR32 2 OTTHUMG00000183079.1 retrogene +34727 chr19 HAVANA gene 50776141 50793142 832.0 - 0 ENSG00000261341.6 protein_coding AC010325.1 2 OTTHUMG00000176604.3 +34728 chr19 HAVANA gene 50792685 50793584 260.0 - 0 ENSG00000268375.1 antisense AC010325.2 2 OTTHUMG00000182962.1 +34729 chr19 HAVANA gene 50790415 50795224 1347.0 + 0 ENSG00000142513.5 protein_coding ACP4 2 OTTHUMG00000182961.1 +34730 chr19 ENSEMBL gene 50799032 50799122 91.0 - 0 ENSG00000221381.1 snoRNA SNORD88B 3 +34731 chr19 ENSEMBL gene 50799442 50799532 91.0 - 0 ENSG00000221241.1 snoRNA SNORD88A 3 +34732 chr19 ENSEMBL gene 50802328 50802418 91.0 - 0 ENSG00000220988.1 snoRNA SNORD88C 3 +34733 chr19 HAVANA gene 50797704 50804929 3256.0 - 0 ENSG00000167747.14 protein_coding C19orf48 2 OTTHUMG00000182875.4 ncRNA_host +34734 chr19 HAVANA gene 50808145 50812707 394.0 - 0 ENSG00000284711.1 unitary_pseudogene AC010325.3 2 OTTHUMG00000192248.1 +34735 chr19 HAVANA gene 50808874 50818880 1416.0 + 0 ENSG00000180279.6 lincRNA LINC01869 2 OTTHUMG00000182877.2 +34736 chr19 HAVANA gene 50819148 50823787 2378.0 - 0 ENSG00000167748.10 protein_coding KLK1 2 OTTHUMG00000182876.2 +34737 chr19 HAVANA gene 50825289 50837213 2289.0 - 0 ENSG00000174562.13 protein_coding KLK15 1 OTTHUMG00000183116.2 +34738 chr19 HAVANA gene 50830530 50851089 392.0 + 0 ENSG00000267968.1 antisense AC011523.1 2 OTTHUMG00000183117.1 +34739 chr19 HAVANA gene 50854915 50860764 4639.0 + 0 ENSG00000142515.14 protein_coding KLK3 2 OTTHUMG00000182867.6 +34740 chr19 HAVANA gene 50861568 50880567 6394.0 + 0 ENSG00000167751.12 protein_coding KLK2 1 OTTHUMG00000182963.4 +34741 chr19 HAVANA gene 50882096 50896398 1912.0 - 0 ENSG00000197588.9 transcribed_unprocessed_pseudogene KLKP1 2 OTTHUMG00000183118.1 +34742 chr19 HAVANA gene 50906352 50910738 1935.0 - 0 ENSG00000167749.11 protein_coding KLK4 2 OTTHUMG00000182964.2 +34743 chr19 HAVANA gene 50927079 50927571 493.0 - 0 ENSG00000228674.4 processed_pseudogene PPIAP59 1 OTTHUMG00000182965.3 pseudo_consens +34744 chr19 HAVANA gene 50943303 50953093 1653.0 - 0 ENSG00000167754.12 protein_coding KLK5 2 OTTHUMG00000183097.5 +34745 chr19 HAVANA gene 50962197 50962781 585.0 - 0 ENSG00000279676.1 TEC AC011483.3 2 OTTHUMG00000183099.1 overlapping_locus +34746 chr19 HAVANA gene 50950185 50963649 959.0 + 0 ENSG00000269495.1 antisense AC011483.2 2 OTTHUMG00000183100.1 +34747 chr19 HAVANA gene 50958631 50969673 1976.0 - 0 ENSG00000167755.14 protein_coding KLK6 2 OTTHUMG00000183098.1 overlapping_locus +34748 chr19 HAVANA gene 50976482 50984099 2434.0 - 0 ENSG00000169035.11 protein_coding KLK7 2 OTTHUMG00000182917.4 +34749 chr19 HAVANA gene 50996007 51002711 1865.0 - 0 ENSG00000129455.15 protein_coding KLK8 2 OTTHUMG00000183086.3 overlapping_locus +34750 chr19 HAVANA gene 50996018 51009581 1933.0 - 0 ENSG00000269741.5 protein_coding AC011473.4 2 OTTHUMG00000183088.1 overlapping_locus +34751 chr19 HAVANA gene 51003111 51009634 840.0 - 0 ENSG00000213022.5 protein_coding KLK9 2 OTTHUMG00000183087.4 overlapping_locus +34752 chr19 HAVANA gene 50968210 51012129 536.0 + 0 ENSG00000267879.1 antisense AC011483.1 2 OTTHUMG00000183127.1 +34753 chr19 HAVANA gene 51014374 51014734 240.0 + 0 ENSG00000268739.1 antisense AC011473.2 2 OTTHUMG00000183145.1 +34754 chr19 HAVANA gene 51012739 51020175 3853.0 - 0 ENSG00000129451.11 protein_coding KLK10 2 OTTHUMG00000182916.3 +34755 chr19 HAVANA gene 51022216 51028039 3113.0 - 0 ENSG00000167757.13 protein_coding KLK11 1 OTTHUMG00000182915.4 +34756 chr19 HAVANA gene 51030076 51034335 485.0 + 0 ENSG00000268906.1 antisense AC011473.3 2 OTTHUMG00000183128.1 +34757 chr19 HAVANA gene 51029092 51035230 1769.0 - 0 ENSG00000186474.15 protein_coding KLK12 2 OTTHUMG00000165806.4 +34758 chr19 HAVANA gene 51043806 51052077 443.0 + 0 ENSG00000268390.1 lincRNA AC011473.1 2 OTTHUMG00000183129.1 +34759 chr19 HAVANA gene 51056206 51065114 2007.0 - 0 ENSG00000167759.12 protein_coding KLK13 2 OTTHUMG00000182912.3 +34760 chr19 HAVANA gene 51077495 51084245 1189.0 - 0 ENSG00000129437.10 protein_coding KLK14 2 OTTHUMG00000143721.5 +34761 chr19 HAVANA gene 51097606 51108370 2087.0 - 0 ENSG00000142544.6 protein_coding CTU1 2 OTTHUMG00000182910.1 +34762 chr19 HAVANA gene 51119987 51122965 909.0 + 0 ENSG00000268581.1 unprocessed_pseudogene SIGLEC18P 2 OTTHUMG00000183140.2 +34763 chr19 HAVANA gene 51124908 51136651 2539.0 + 0 ENSG00000129450.8 protein_coding SIGLEC9 1 OTTHUMG00000182894.3 +34764 chr19 HAVANA gene 51137970 51138634 421.0 + 0 ENSG00000267990.1 unprocessed_pseudogene AC063977.2 2 OTTHUMG00000183528.1 +34765 chr19 HAVANA gene 51143826 51144196 371.0 + 0 ENSG00000267895.1 transcribed_unprocessed_pseudogene AC063977.1 2 OTTHUMG00000183141.1 overlapping_locus +34766 chr19 HAVANA gene 51142299 51153526 2043.0 + 0 ENSG00000168995.13 protein_coding SIGLEC7 2 OTTHUMG00000182895.3 overlapping_locus +34767 chr19 HAVANA gene 51155288 51155624 337.0 - 0 ENSG00000269681.1 processed_pseudogene AC063977.7 2 OTTHUMG00000183125.1 overlapping_locus +34768 chr19 HAVANA gene 51167328 51173524 2280.0 + 0 ENSG00000171101.13 transcribed_unprocessed_pseudogene SIGLEC17P 2 OTTHUMG00000182974.3 +34769 chr19 HAVANA gene 51152923 51181966 1763.0 - 0 ENSG00000269072.1 antisense AC063977.6 2 OTTHUMG00000183198.1 overlapping_locus +34770 chr19 HAVANA gene 51184905 51190809 1311.0 + 0 ENSG00000268336.1 unprocessed_pseudogene SIGLEC20P 2 OTTHUMG00000183130.2 +34771 chr19 HAVANA gene 51194118 51195540 872.0 - 0 ENSG00000268652.1 processed_pseudogene AC063977.4 1 OTTHUMG00000183126.1 pseudo_consens +34772 chr19 HAVANA gene 51198855 51201449 1010.0 + 0 ENSG00000269253.1 unprocessed_pseudogene SIGLEC21P 2 OTTHUMG00000183131.1 +34773 chr19 ENSEMBL gene 51206929 51207009 81.0 - 0 ENSG00000278617.1 miRNA MIR8074 3 +34774 chr19 HAVANA gene 51211080 51212088 744.0 + 0 ENSG00000268849.5 transcribed_unprocessed_pseudogene SIGLEC22P 2 OTTHUMG00000183132.1 +34775 chr19 HAVANA gene 51225064 51243860 5975.0 + 0 ENSG00000105383.14 protein_coding CD33 2 OTTHUMG00000182891.2 +34776 chr19 HAVANA gene 51246348 51269330 2351.0 + 0 ENSG00000179213.13 protein_coding SIGLECL1 1 OTTHUMG00000182881.3 +34777 chr19 HAVANA gene 51251231 51271179 547.0 - 0 ENSG00000268595.1 antisense AC063977.3 2 OTTHUMG00000182882.1 +34778 chr19 HAVANA gene 51271266 51281234 1109.0 + 0 ENSG00000268318.5 lincRNA LINC01872 2 OTTHUMG00000183133.1 overlapping_locus +34779 chr19 HAVANA gene 51280862 51283022 974.0 + 0 ENSG00000269021.1 transcribed_unprocessed_pseudogene AC063977.5 2 OTTHUMG00000183134.2 overlapping_locus +34780 chr19 HAVANA gene 51311848 51330354 2606.0 + 0 ENSG00000142549.9 protein_coding IGLON5 2 OTTHUMG00000154422.1 +34781 chr19 HAVANA gene 51331536 51342124 3771.0 - 0 ENSG00000186806.5 protein_coding VSIG10L 1 OTTHUMG00000182975.1 +34782 chr19 HAVANA gene 51340695 51344117 438.0 + 0 ENSG00000267905.5 antisense AC008750.3 2 OTTHUMG00000183146.1 +34783 chr19 HAVANA gene 51345169 51353293 219.0 + 0 ENSG00000267984.1 antisense AC008750.4 2 OTTHUMG00000182902.1 +34784 chr19 HAVANA gene 51361712 51365544 473.0 - 0 ENSG00000268520.1 sense_intronic AC008750.5 2 OTTHUMG00000182904.1 overlapping_locus +34785 chr19 HAVANA gene 51345169 51366418 6526.0 - 0 ENSG00000105379.9 protein_coding ETFB 2 OTTHUMG00000182903.3 overlapping_locus +34786 chr19 HAVANA gene 51350373 51368099 551.0 - 0 ENSG00000269403.1 protein_coding AC008750.8 2 OTTHUMG00000182911.2 overlapping_locus +34787 chr19 HAVANA gene 51367098 51369003 1156.0 - 0 ENSG00000160318.6 protein_coding CLDND2 2 OTTHUMG00000182901.1 overlapping_locus +34788 chr19 HAVANA gene 51371606 51372715 935.0 - 0 ENSG00000105374.9 protein_coding NKG7 2 OTTHUMG00000182898.2 +34789 chr19 HAVANA gene 51379909 51387960 988.0 - 0 ENSG00000105370.7 protein_coding LIM2 2 OTTHUMG00000182896.1 +34790 chr19 HAVANA gene 51388289 51390574 1447.0 - 0 ENSG00000262874.1 protein_coding C19orf84 2 OTTHUMG00000177322.3 +34791 chr19 HAVANA gene 51396755 51403526 845.0 - 0 ENSG00000268144.1 processed_pseudogene NIFKP6 1 OTTHUMG00000182966.1 pseudo_consens +34792 chr19 HAVANA gene 51394488 51403650 559.0 + 0 ENSG00000268889.1 lincRNA AC008750.7 2 OTTHUMG00000183135.1 +34793 chr19 HAVANA gene 51414298 51414965 492.0 + 0 ENSG00000254760.1 antisense AC008750.1 2 OTTHUMG00000165522.1 +34794 chr19 HAVANA gene 51415724 51417425 1005.0 + 0 ENSG00000255441.1 antisense AC008750.2 2 OTTHUMG00000165523.1 +34795 chr19 HAVANA gene 51410021 51417803 3667.0 - 0 ENSG00000142512.14 protein_coding SIGLEC10 1 OTTHUMG00000165521.4 +34796 chr19 HAVANA gene 51426347 51426668 322.0 - 0 ENSG00000268711.1 unprocessed_pseudogene AC008750.6 2 OTTHUMG00000183136.1 +34797 chr19 HAVANA gene 51442379 51442650 272.0 + 0 ENSG00000269181.1 processed_pseudogene AC020914.5 1 OTTHUMG00000183491.1 pseudo_consens +34798 chr19 HAVANA gene 51450847 51458456 3171.0 - 0 ENSG00000105366.15 protein_coding SIGLEC8 1 OTTHUMG00000182776.4 +34799 chr19 HAVANA gene 51468360 51468636 277.0 - 0 ENSG00000268957.1 unprocessed_pseudogene AC020914.3 2 OTTHUMG00000185923.1 +34800 chr19 HAVANA gene 51478622 51490952 1476.0 + 0 ENSG00000213822.6 protein_coding CEACAM18 2 OTTHUMG00000151557.2 +34801 chr19 HAVANA gene 51491357 51501789 2201.0 - 0 ENSG00000254521.6 protein_coding SIGLEC12 2 OTTHUMG00000165524.5 +34802 chr19 HAVANA gene 51505059 51505362 304.0 - 0 ENSG00000268839.1 unprocessed_pseudogene AC020914.2 2 OTTHUMG00000183493.1 +34803 chr19 HAVANA gene 51508573 51509311 545.0 + 0 ENSG00000269580.2 unprocessed_pseudogene SIGLEC27P 2 OTTHUMG00000183494.1 +34804 chr19 HAVANA gene 51519731 51520260 430.0 + 0 ENSG00000268777.1 antisense AC020914.1 2 OTTHUMG00000183512.1 +34805 chr19 HAVANA gene 51519525 51531856 2573.0 - 0 ENSG00000105492.15 protein_coding SIGLEC6 1 OTTHUMG00000133571.5 +34806 chr19 HAVANA gene 51560122 51560590 329.0 - 0 ENSG00000269130.1 unprocessed_pseudogene AC020914.4 2 OTTHUMG00000183513.1 +34807 chr19 HAVANA gene 51563797 51564910 1114.0 - 0 ENSG00000268267.1 unprocessed_pseudogene SIGLEC29P 2 OTTHUMG00000183514.1 +34808 chr19 HAVANA gene 51571298 51592508 7396.0 + 0 ENSG00000105497.7 protein_coding ZNF175 1 OTTHUMG00000167771.4 +34809 chr19 HAVANA gene 51599289 51600470 1182.0 + 0 ENSG00000267808.1 lincRNA AC018755.1 2 OTTHUMG00000183497.1 overlapping_locus +34810 chr19 HAVANA gene 51594561 51606150 1472.0 + 0 ENSG00000269388.1 transcribed_processed_pseudogene AC018755.3 2 OTTHUMG00000183496.2 overlapping_locus +34811 chr19 HAVANA gene 51621136 51621701 566.0 + 0 ENSG00000244071.1 processed_pseudogene RPL9P33 1 OTTHUMG00000158218.1 pseudo_consens +34812 chr19 HAVANA gene 51639478 51639931 454.0 - 0 ENSG00000273837.1 sense_intronic AC018755.4 2 OTTHUMG00000183498.3 overlapping_locus +34813 chr19 HAVANA gene 51611927 51645545 2360.0 - 0 ENSG00000105501.12 protein_coding SIGLEC5 1 OTTHUMG00000165510.6 overlapping_locus +34814 chr19 HAVANA gene 51642553 51646801 2082.0 - 0 ENSG00000254415.3 protein_coding SIGLEC14 2 OTTHUMG00000165511.4 overlapping_locus +34815 chr19 HAVANA gene 51612091 51646889 2310.0 - 0 ENSG00000268500.5 protein_coding AC018755.2 2 OTTHUMG00000188645.1 overlapping_locus +34816 chr19 HAVANA gene 51648862 51649610 749.0 + 0 ENSG00000243469.1 processed_pseudogene RPL7P51 1 OTTHUMG00000158219.1 pseudo_consens +34817 chr19 ENSEMBL gene 51692612 51692681 70.0 + 0 ENSG00000207550.1 miRNA MIR99B 3 +34818 chr19 ENSEMBL gene 51692786 51692864 79.0 + 0 ENSG00000198972.3 miRNA MIRLET7E 3 +34819 chr19 ENSEMBL gene 51693254 51693339 86.0 + 0 ENSG00000208008.1 miRNA MIR125A 3 +34820 chr19 HAVANA gene 51685363 51693456 3962.0 - 0 ENSG00000269959.1 lincRNA SPACA6P-AS 2 OTTHUMG00000183887.1 +34821 chr19 HAVANA gene 51689128 51712387 4103.0 + 0 ENSG00000182310.14 protein_coding SPACA6 2 OTTHUMG00000177373.5 ncRNA_host +34822 chr19 HAVANA gene 51713112 51723994 2241.0 - 0 ENSG00000105509.10 protein_coding HAS1 1 OTTHUMG00000183499.3 +34823 chr19 HAVANA gene 51752026 51770526 3700.0 + 0 ENSG00000171049.8 protein_coding FPR2 2 OTTHUMG00000183501.4 +34824 chr19 HAVANA gene 51745172 51804110 2594.0 - 0 ENSG00000171051.8 protein_coding FPR1 2 OTTHUMG00000183500.4 +34825 chr19 HAVANA gene 51795163 51826189 2772.0 + 0 ENSG00000187474.4 protein_coding FPR3 2 OTTHUMG00000183502.2 +34826 chr19 HAVANA gene 51839771 51840945 552.0 - 0 ENSG00000268316.1 lincRNA AC006272.1 2 OTTHUMG00000182420.1 overlapping_locus +34827 chr19 HAVANA gene 51842878 51843315 163.0 - 0 ENSG00000269483.2 transcribed_unprocessed_pseudogene AC006272.2 2 OTTHUMG00000191780.1 overlapping_locus +34828 chr19 HAVANA gene 51860242 51863236 2995.0 - 0 ENSG00000283236.1 transcribed_unprocessed_pseudogene AC074141.1 2 OTTHUMG00000182380.2 overlapping_locus +34829 chr19 HAVANA gene 51804816 51890950 7510.0 - 0 ENSG00000161551.14 protein_coding ZNF577 2 OTTHUMG00000157045.4 overlapping_locus +34830 chr19 HAVANA gene 51888025 51900463 579.0 + 0 ENSG00000268095.1 antisense ZNF649-AS1 2 OTTHUMG00000182422.1 +34831 chr19 HAVANA gene 51889224 51905040 4365.0 - 0 ENSG00000198093.10 protein_coding ZNF649 2 OTTHUMG00000182423.2 overlapping_locus +34832 chr19 HAVANA gene 51914675 51917703 1834.0 - 0 ENSG00000283285.1 unprocessed_pseudogene AC011460.1 2 OTTHUMG00000191715.1 +34833 chr19 HAVANA gene 51927147 51948759 3855.0 + 0 ENSG00000176024.17 protein_coding ZNF613 2 OTTHUMG00000182424.5 +34834 chr19 HAVANA gene 51949134 51981367 1018.0 + 0 ENSG00000269235.1 antisense ZNF350-AS1 2 OTTHUMG00000182537.1 +34835 chr19 HAVANA gene 51964343 51986856 4539.0 - 0 ENSG00000256683.6 protein_coding ZNF350 1 OTTHUMG00000182538.3 +34836 chr19 HAVANA gene 51991332 52008230 4898.0 - 0 ENSG00000197619.13 protein_coding ZNF615 2 OTTHUMG00000182550.2 +34837 chr19 HAVANA gene 52012765 52030240 5813.0 - 0 ENSG00000142556.18 protein_coding ZNF614 2 OTTHUMG00000182551.2 +34838 chr19 HAVANA gene 52049007 52049754 748.0 + 0 ENSG00000275055.1 antisense AC011468.5 2 OTTHUMG00000186778.1 +34839 chr19 HAVANA gene 52058490 52063703 675.0 - 0 ENSG00000260160.1 sense_overlapping AC011468.1 2 OTTHUMG00000176422.1 overlapping_locus +34840 chr19 HAVANA gene 52031379 52095738 5985.0 - 0 ENSG00000256087.6 protein_coding ZNF432 2 OTTHUMG00000182552.3 overlapping_locus +34841 chr19 HAVANA gene 52064466 52095765 4287.0 - 0 ENSG00000197608.11 protein_coding ZNF841 1 OTTHUMG00000182558.2 overlapping_locus +34842 chr19 HAVANA gene 52110318 52110726 409.0 - 0 ENSG00000270248.1 processed_pseudogene AC011468.4 1 OTTHUMG00000184982.1 pseudo_consens +34843 chr19 HAVANA gene 52113091 52139922 4891.0 - 0 ENSG00000204611.6 protein_coding ZNF616 2 OTTHUMG00000182566.2 overlapping_locus +34844 chr19 HAVANA gene 52143043 52143336 294.0 + 0 ENSG00000243680.1 processed_pseudogene RPL37P23 1 OTTHUMG00000158220.1 pseudo_consens,overlapping_locus +34845 chr19 HAVANA gene 52142626 52144156 332.0 + 0 ENSG00000268458.1 lincRNA AC011468.3 2 OTTHUMG00000182587.1 overlapping_locus +34846 chr19 HAVANA gene 52130548 52171533 599.0 - 0 ENSG00000267827.5 processed_transcript AC011468.2 2 OTTHUMG00000182586.1 overlapping_locus +34847 chr19 HAVANA gene 52153864 52171643 4244.0 - 0 ENSG00000196267.12 protein_coding ZNF836 2 OTTHUMG00000182567.3 overlapping_locus +34848 chr19 HAVANA gene 52171158 52177002 578.0 + 0 ENSG00000267927.1 antisense AC010320.1 2 OTTHUMG00000182588.1 +34849 chr19 ENSEMBL gene 52222020 52222098 79.0 + 0 ENSG00000274380.1 miRNA MIR6801 3 +34850 chr19 HAVANA gene 52190039 52229533 7437.0 + 0 ENSG00000105568.17 protein_coding PPP2R1A 1 OTTHUMG00000137367.4 ncRNA_host +34851 chr19 HAVANA gene 52222225 52231294 1121.0 - 0 ENSG00000268015.1 antisense AC010320.2 2 OTTHUMG00000182628.1 +34852 chr19 HAVANA gene 52241765 52242440 676.0 - 0 ENSG00000277562.1 processed_pseudogene AC010320.5 2 OTTHUMG00000188028.1 +34853 chr19 ENSEMBL gene 52259076 52259187 112.0 - 0 ENSG00000207265.1 misc_RNA RF00019 3 +34854 chr19 ENSEMBL gene 52281797 52281893 97.0 + 0 ENSG00000208002.1 miRNA MIR643 3 +34855 chr19 HAVANA gene 52269571 52296046 7335.0 + 0 ENSG00000196214.10 protein_coding ZNF766 1 OTTHUMG00000182629.4 ncRNA_host +34856 chr19 HAVANA gene 52284780 52297920 447.0 - 0 ENSG00000269102.1 antisense AC010320.3 2 OTTHUMG00000182631.1 +34857 chr19 HAVANA gene 52297177 52325922 4836.0 + 0 ENSG00000198464.13 protein_coding ZNF480 1 OTTHUMG00000157507.4 +34858 chr19 HAVANA gene 52300693 52345229 1905.0 - 0 ENSG00000269535.1 antisense AC010320.4 2 OTTHUMG00000182644.1 +34859 chr19 HAVANA gene 52336245 52367778 3546.0 + 0 ENSG00000167554.14 protein_coding ZNF610 2 OTTHUMG00000182645.3 +34860 chr19 HAVANA gene 52369917 52385795 3719.0 + 0 ENSG00000221923.8 protein_coding ZNF880 2 OTTHUMG00000167972.2 +34861 chr19 HAVANA gene 52392659 52392755 97.0 + 0 ENSG00000277977.1 unprocessed_pseudogene AC010332.1 2 OTTHUMG00000188029.1 +34862 chr19 HAVANA gene 52388842 52397766 4160.0 - 0 ENSG00000269834.5 processed_transcript ZNF528-AS1 2 OTTHUMG00000182646.1 +34863 chr19 HAVANA gene 52397849 52418412 8530.0 + 0 ENSG00000167555.13 protein_coding ZNF528 1 OTTHUMG00000156494.8 +34864 chr19 HAVANA gene 52425863 52426202 340.0 - 0 ENSG00000269776.1 processed_pseudogene DPPA5P1 1 OTTHUMG00000182671.1 pseudo_consens +34865 chr19 HAVANA gene 52429187 52452315 3279.0 + 0 ENSG00000198633.10 protein_coding ZNF534 1 OTTHUMG00000156493.3 +34866 chr19 HAVANA gene 52473336 52475239 1904.0 - 0 ENSG00000278543.1 unprocessed_pseudogene AC010332.2 2 OTTHUMG00000188030.1 +34867 chr19 HAVANA gene 52453576 52512154 7189.0 + 0 ENSG00000258405.9 protein_coding ZNF578 2 OTTHUMG00000156468.7 +34868 chr19 HAVANA gene 52511282 52512342 880.0 - 0 ENSG00000269349.1 antisense AC022150.3 2 OTTHUMG00000182753.1 +34869 chr19 HAVANA gene 52564076 52564231 156.0 + 0 ENSG00000242255.1 transcribed_unprocessed_pseudogene RPL39P34 2 OTTHUMG00000158225.2 overlapping_locus +34870 chr19 HAVANA gene 52527652 52564464 5008.0 + 0 ENSG00000198482.11 protein_coding ZNF808 2 OTTHUMG00000158230.5 overlapping_locus +34871 chr19 HAVANA gene 52575883 52585561 640.0 - 0 ENSG00000268886.1 antisense AC022150.1 2 OTTHUMG00000182757.1 +34872 chr19 HAVANA gene 52555457 52587174 7201.0 + 0 ENSG00000167562.12 protein_coding ZNF701 1 OTTHUMG00000182754.2 overlapping_locus +34873 chr19 HAVANA gene 52588505 52597345 2029.0 + 0 ENSG00000123870.10 transcribed_unprocessed_pseudogene ZNF137P 2 OTTHUMG00000154335.2 +34874 chr19 HAVANA gene 52597699 52598887 644.0 - 0 ENSG00000268970.1 sense_intronic AC022150.2 2 OTTHUMG00000182791.1 overlapping_locus +34875 chr19 HAVANA gene 52650437 52653284 2848.0 - 0 ENSG00000269825.1 sense_intronic AC022150.4 2 OTTHUMG00000182793.1 overlapping_locus +34876 chr19 HAVANA gene 52594060 52690496 8028.0 - 0 ENSG00000167766.18 protein_coding ZNF83 1 OTTHUMG00000182761.4 overlapping_locus +34877 chr19 HAVANA gene 52702813 52735073 7148.0 - 0 ENSG00000213020.9 protein_coding ZNF611 2 OTTHUMG00000154908.6 +34878 chr19 HAVANA gene 52749942 52786807 6964.0 - 0 ENSG00000189190.10 protein_coding ZNF600 2 OTTHUMG00000182686.2 +34879 chr19 HAVANA gene 52809824 52810708 885.0 + 0 ENSG00000255875.2 processed_pseudogene AC008813.1 1 OTTHUMG00000167868.2 pseudo_consens +34880 chr19 HAVANA gene 52797409 52857600 5974.0 - 0 ENSG00000198538.10 protein_coding ZNF28 1 OTTHUMG00000154564.8 overlapping_locus +34881 chr19 HAVANA gene 52861807 52864151 1172.0 - 0 ENSG00000268225.2 unprocessed_pseudogene AC010487.1 2 OTTHUMG00000182812.2 overlapping_locus +34882 chr19 HAVANA gene 52865369 52865429 61.0 - 0 ENSG00000283695.1 unprocessed_pseudogene AC010487.4 2 OTTHUMG00000191802.1 +34883 chr19 HAVANA gene 52838008 52890375 11355.0 - 0 ENSG00000204604.10 protein_coding ZNF468 2 OTTHUMG00000182687.2 overlapping_locus +34884 chr19 HAVANA gene 52863790 52897693 8363.0 - 0 ENSG00000182986.13 protein_coding ZNF320 2 OTTHUMG00000182797.4 overlapping_locus +34885 chr19 HAVANA gene 52904417 52923481 4444.0 - 0 ENSG00000213793.5 protein_coding ZNF888 2 OTTHUMG00000182819.4 +34886 chr19 HAVANA gene 52923382 52924075 486.0 + 0 ENSG00000269646.1 lincRNA AC010487.2 2 OTTHUMG00000182820.1 +34887 chr19 HAVANA gene 52927135 52942601 2341.0 - 0 ENSG00000213801.4 transcribed_processed_pseudogene ZNF321P 2 OTTHUMG00000167760.2 overlapping_locus +34888 chr19 HAVANA gene 52880663 52962768 1966.0 - 0 ENSG00000283088.1 protein_coding AC010487.3 2 OTTHUMG00000191567.3 overlapping_locus +34889 chr19 HAVANA gene 52928475 52962823 1252.0 - 0 ENSG00000221874.4 protein_coding ZNF816-ZNF321P 2 OTTHUMG00000167759.1 overlapping_locus +34890 chr19 HAVANA gene 52949379 52962911 3310.0 - 0 ENSG00000180257.13 protein_coding ZNF816 1 OTTHUMG00000167761.3 overlapping_locus +34891 chr19 HAVANA gene 52956041 52981654 553.0 - 0 ENSG00000269082.1 processed_transcript AC010328.3 2 OTTHUMG00000182823.2 overlapping_locus +34892 chr19 HAVANA gene 53004040 53005150 1111.0 + 0 ENSG00000268282.1 processed_pseudogene AC010328.2 1 OTTHUMG00000182852.1 pseudo_consens +34893 chr19 HAVANA gene 53007512 53013180 4060.0 + 0 ENSG00000267943.1 lincRNA AC010328.1 2 OTTHUMG00000182853.1 +34894 chr19 HAVANA gene 53013921 53016122 2202.0 + 0 ENSG00000269526.1 protein_coding ERVV-1 2 OTTHUMG00000182942.1 +34895 chr19 HAVANA gene 52968251 53037898 4769.0 - 0 ENSG00000242779.6 transcribed_processed_pseudogene ZNF702P 2 OTTHUMG00000150515.3 overlapping_locus +34896 chr19 HAVANA gene 53044738 53051076 2431.0 + 0 ENSG00000268964.1 protein_coding ERVV-2 2 OTTHUMG00000182943.1 +34897 chr19 HAVANA gene 53066606 53103436 8511.0 - 0 ENSG00000170949.17 protein_coding ZNF160 1 OTTHUMG00000182854.3 +34898 chr19 HAVANA gene 53107879 53133077 3780.0 - 0 ENSG00000170954.11 protein_coding ZNF415 2 OTTHUMG00000182865.2 overlapping_locus +34899 chr19 HAVANA gene 53124072 53159075 9131.0 - 0 ENSG00000197937.12 protein_coding ZNF347 2 OTTHUMG00000182883.4 overlapping_locus +34900 chr19 HAVANA gene 53162428 53163563 359.0 + 0 ENSG00000268842.1 antisense AC092070.1 2 OTTHUMG00000182886.1 +34901 chr19 HAVANA gene 53159213 53193386 7475.0 - 0 ENSG00000197497.10 protein_coding ZNF665 2 OTTHUMG00000182885.3 +34902 chr19 HAVANA gene 53197111 53214522 4052.0 + 0 ENSG00000269001.2 transcribed_unprocessed_pseudogene AC092070.2 2 OTTHUMG00000182887.2 +34903 chr19 HAVANA gene 53223973 53224879 907.0 - 0 ENSG00000267809.1 processed_pseudogene NDUFV2P1 1 OTTHUMG00000182889.1 pseudo_consens +34904 chr19 HAVANA gene 53240675 53241913 337.0 + 0 ENSG00000269288.1 antisense AC092070.3 2 OTTHUMG00000182905.1 +34905 chr19 HAVANA gene 53235381 53254898 9348.0 - 0 ENSG00000197928.10 protein_coding ZNF677 1 OTTHUMG00000182890.3 +34906 chr19 HAVANA gene 53258292 53261837 1460.0 + 0 ENSG00000196131.6 protein_coding VN1R2 2 OTTHUMG00000182906.1 +34907 chr19 HAVANA gene 53266676 53267723 1048.0 - 0 ENSG00000228567.3 protein_coding VN1R4 2 OTTHUMG00000182907.1 +34908 chr19 HAVANA gene 53267870 53270932 507.0 - 0 ENSG00000269758.1 lincRNA AC092070.4 2 OTTHUMG00000182908.1 +34909 chr19 HAVANA gene 53281559 53284944 1381.0 + 0 ENSG00000189348.6 transcribed_unprocessed_pseudogene FAM90A27P 2 OTTHUMG00000182909.1 +34910 chr19 HAVANA gene 53289601 53291626 2026.0 - 0 ENSG00000163098.4 protein_coding BIRC8 2 OTTHUMG00000182919.1 retrogene +34911 chr19 HAVANA gene 53299051 53308644 1858.0 - 0 ENSG00000269118.1 transcribed_unprocessed_pseudogene FAM90A28P 2 OTTHUMG00000182944.1 +34912 chr19 HAVANA gene 53315137 53316043 907.0 + 0 ENSG00000174677.4 unitary_pseudogene VN1R6P 2 OTTHUMG00000154497.1 +34913 chr19 HAVANA gene 53333746 53356906 6453.0 + 0 ENSG00000213799.12 protein_coding ZNF845 2 OTTHUMG00000182920.4 +34914 chr19 HAVANA gene 53386233 53386388 156.0 + 0 ENSG00000241069.1 transcribed_processed_pseudogene AC125388.1 2 OTTHUMG00000158259.1 overlapping_locus +34915 chr19 HAVANA gene 53365693 53392217 7193.0 + 0 ENSG00000203326.11 protein_coding ZNF525 1 OTTHUMG00000158277.4 overlapping_locus +34916 chr19 HAVANA gene 53413190 53413345 156.0 + 0 ENSG00000239912.1 processed_pseudogene RPL39P36 1 OTTHUMG00000158291.1 pseudo_consens,overlapping_locus +34917 chr19 HAVANA gene 53426019 53426499 481.0 - 0 ENSG00000249435.1 processed_pseudogene AC022137.2 2 OTTHUMG00000163080.1 +34918 chr19 HAVANA gene 53389793 53430413 12344.0 + 0 ENSG00000196417.12 protein_coding ZNF765 2 OTTHUMG00000163079.5 overlapping_locus +34919 chr19 HAVANA gene 53431984 53444670 2920.0 + 0 ENSG00000241015.2 transcribed_processed_pseudogene TPM3P9 1 OTTHUMG00000157312.3 pseudo_consens,overlapping_locus +34920 chr19 HAVANA gene 53431993 53458261 4714.0 + 0 ENSG00000160336.14 protein_coding ZNF761 2 OTTHUMG00000156999.8 overlapping_locus +34921 chr19 HAVANA gene 53479350 53480091 742.0 + 0 ENSG00000250731.1 processed_pseudogene TPM3P6 1 OTTHUMG00000163081.1 pseudo_consens,overlapping_locus +34922 chr19 HAVANA gene 53495887 53496037 151.0 + 0 ENSG00000241434.1 transcribed_processed_pseudogene AC022137.1 2 OTTHUMG00000158303.1 overlapping_locus +34923 chr19 HAVANA gene 53467735 53496255 6244.0 + 0 ENSG00000198346.10 protein_coding ZNF813 1 OTTHUMG00000158309.4 overlapping_locus +34924 chr19 HAVANA gene 53512092 53512616 525.0 - 0 ENSG00000274892.1 unprocessed_pseudogene AC011487.4 2 OTTHUMG00000188032.1 +34925 chr19 HAVANA gene 53503392 53512687 1423.0 + 0 ENSG00000213777.5 transcribed_processed_pseudogene AC011487.1 2 OTTHUMG00000163078.2 +34926 chr19 HAVANA gene 53519527 53580269 8926.0 + 0 ENSG00000130844.17 protein_coding ZNF331 2 OTTHUMG00000163019.10 +34927 chr19 HAVANA gene 53599628 53608451 2047.0 - 0 ENSG00000268864.4 transcribed_unprocessed_pseudogene AC011487.2 1 OTTHUMG00000183076.2 +34928 chr19 HAVANA gene 53616802 53617254 453.0 + 0 ENSG00000269608.1 processed_pseudogene AC011487.3 1 OTTHUMG00000183000.1 pseudo_consens +34929 chr19 ENSEMBL gene 53629713 53630041 329.0 + 0 ENSG00000242668.3 misc_RNA RN7SL317P 3 +34930 chr19 HAVANA gene 53632056 53637009 648.0 + 0 ENSG00000204595.1 protein_coding DPRX 2 OTTHUMG00000170632.1 +34931 chr19 ENSEMBL gene 53653685 53653791 107.0 + 0 ENSG00000200393.1 snRNA RNU6-698P 3 +34932 chr19 HAVANA gene 53657400 53658462 729.0 - 0 ENSG00000270347.1 unprocessed_pseudogene AC011453.2 1 OTTHUMG00000184985.1 pseudo_consens +34933 chr19 ENSEMBL gene 53666679 53666762 84.0 + 0 ENSG00000207645.2 miRNA MIR512-1 3 +34934 chr19 ENSEMBL gene 53669157 53669254 98.0 + 0 ENSG00000207644.1 miRNA MIR512-2 3 +34935 chr19 ENSEMBL gene 53671968 53672040 73.0 + 0 ENSG00000221017.1 miRNA MIR1323 3 +34936 chr19 ENSEMBL gene 53674197 53674320 124.0 + 0 ENSG00000207869.1 miRNA MIR498 3 +34937 chr19 ENSEMBL gene 53675711 53675797 87.0 + 0 ENSG00000207599.1 miRNA MIR520E 3 +34938 chr19 ENSEMBL gene 53679003 53679085 83.0 + 0 ENSG00000207616.1 miRNA MIR515-1 3 +34939 chr19 ENSEMBL gene 53679940 53680023 84.0 + 0 ENSG00000207810.1 miRNA MIR519E 3 +34940 chr19 ENSEMBL gene 53682159 53682245 87.0 + 0 ENSG00000283540.1 miRNA MIR520F 3 +34941 chr19 ENSEMBL gene 53685009 53685091 83.0 + 0 ENSG00000207615.3 miRNA MIR515-2 3 +34942 chr19 ENSEMBL gene 53686469 53686555 87.0 + 0 ENSG00000207788.1 miRNA MIR519C 3 +34943 chr19 ENSEMBL gene 53688481 53688567 87.0 + 0 ENSG00000221421.1 miRNA MIR1283-1 3 +34944 chr19 ENSEMBL gene 53690881 53690965 85.0 + 0 ENSG00000207594.1 miRNA MIR520A 3 +34945 chr19 ENSEMBL gene 53694393 53694475 83.0 + 0 ENSG00000207580.1 miRNA MIR526B 3 +34946 chr19 ENSEMBL gene 53695213 53695293 81.0 + 0 ENSG00000207825.1 miRNA MIR519B 3 +34947 chr19 ENSEMBL gene 53697533 53697617 85.0 + 0 ENSG00000207711.1 miRNA MIR525 3 +34948 chr19 ENSEMBL gene 53698385 53698471 87.0 + 0 ENSG00000283455.1 miRNA MIR523 3 +34949 chr19 ENSEMBL gene 53700015 53700101 87.0 + 0 ENSG00000207706.1 miRNA MIR518F 3 +34950 chr19 ENSEMBL gene 53701227 53701287 61.0 + 0 ENSG00000207722.1 miRNA MIR520B 3 +34951 chr19 ENSEMBL gene 53702737 53702819 83.0 + 0 ENSG00000207862.1 miRNA MIR518B 3 +34952 chr19 ENSEMBL gene 53706252 53706336 85.0 + 0 ENSG00000207629.1 miRNA MIR526A1 3 +34953 chr19 ENSEMBL gene 53707453 53707539 87.0 + 0 ENSG00000207738.1 miRNA MIR520C 3 +34954 chr19 ENSEMBL gene 53708735 53708835 101.0 + 0 ENSG00000283490.1 miRNA MIR518C 3 +34955 chr19 ENSEMBL gene 53711002 53711088 87.0 + 0 ENSG00000283289.1 miRNA MIR524 3 +34956 chr19 ENSEMBL gene 53712268 53712354 87.0 + 0 ENSG00000207734.1 miRNA MIR517A 3 +34957 chr19 ENSEMBL gene 53713347 53713434 88.0 + 0 ENSG00000207981.1 miRNA MIR519D 3 +34958 chr19 ENSEMBL gene 53716594 53716680 87.0 + 0 ENSG00000207549.1 miRNA MIR521-2 3 +34959 chr19 ENSEMBL gene 53719064 53719165 102.0 - 0 ENSG00000251843.1 snRNA RNU6-803P 3 +34960 chr19 ENSEMBL gene 53720096 53720182 87.0 + 0 ENSG00000207735.1 miRNA MIR520D 3 +34961 chr19 ENSEMBL gene 53721076 53721142 67.0 + 0 ENSG00000207837.1 miRNA MIR517B 3 +34962 chr19 ENSEMBL gene 53722166 53722255 90.0 + 0 ENSG00000207799.1 miRNA MIR520G 3 +34963 chr19 ENSEMBL gene 53725442 53725526 85.0 + 0 ENSG00000207925.1 miRNA MIR516B2 3 +34964 chr19 ENSEMBL gene 53726922 53726986 65.0 + 0 ENSG00000211532.1 miRNA MIR526A2 3 +34965 chr19 ENSEMBL gene 53729838 53729925 88.0 + 0 ENSG00000207987.1 miRNA MIR518E 3 +34966 chr19 ENSEMBL gene 53731006 53731090 85.0 + 0 ENSG00000207803.1 miRNA MIR518A1 3 +34967 chr19 ENSEMBL gene 53732981 53733083 103.0 - 0 ENSG00000252734.1 snRNA RNU6-980P 3 +34968 chr19 ENSEMBL gene 53734877 53734963 87.0 + 0 ENSG00000283330.1 miRNA MIR518D 3 +34969 chr19 ENSEMBL gene 53736845 53736934 90.0 + 0 ENSG00000207946.3 miRNA MIR516B1 3 +34970 chr19 ENSEMBL gene 53739333 53739419 87.0 + 0 ENSG00000207699.1 miRNA MIR518A2 3 +34971 chr19 ENSEMBL gene 53741313 53741407 95.0 + 0 ENSG00000207838.1 miRNA MIR517C 3 +34972 chr19 ENSEMBL gene 53742512 53742599 88.0 + 0 ENSG00000207861.1 miRNA MIR520H 3 +34973 chr19 ENSEMBL gene 53745004 53745105 102.0 - 0 ENSG00000252025.1 snRNA RNU6-982P 3 +34974 chr19 ENSEMBL gene 53748636 53748722 87.0 + 0 ENSG00000207634.1 miRNA MIR521-1 3 +34975 chr19 ENSEMBL gene 53749851 53749951 101.0 - 0 ENSG00000252191.1 snRNA RNU6-751P 3 +34976 chr19 ENSEMBL gene 53751211 53751297 87.0 + 0 ENSG00000283685.1 miRNA MIR522 3 +34977 chr19 ENSEMBL gene 53752397 53752481 85.0 + 0 ENSG00000207992.1 miRNA MIR519A1 3 +34978 chr19 ENSEMBL gene 53754018 53754102 85.0 + 0 ENSG00000207979.1 miRNA MIR527 3 +34979 chr19 ENSEMBL gene 53756741 53756830 90.0 + 0 ENSG00000207767.3 miRNA MIR516A1 3 +34980 chr19 ENSEMBL gene 53758232 53758318 87.0 + 0 ENSG00000221548.1 miRNA MIR1283-2 3 +34981 chr19 ENSEMBL gene 53760087 53760188 102.0 - 0 ENSG00000252063.1 snRNA RNU6-1041P 3 +34982 chr19 ENSEMBL gene 53761133 53761222 90.0 + 0 ENSG00000207620.1 miRNA MIR516A2 3 +34983 chr19 ENSEMBL gene 53762344 53762430 87.0 + 0 ENSG00000284362.1 miRNA MIR519A2 3 +34984 chr19 HAVANA gene 53761961 53764199 2239.0 + 0 ENSG00000269842.5 lincRNA AC011453.1 2 OTTHUMG00000183209.1 ncRNA_host +34985 chr19 ENSEMBL gene 53766534 53766632 99.0 - 0 ENSG00000252979.1 snRNA RNU6-165P 3 +34986 chr19 HAVANA gene 53767971 53768553 256.0 - 0 ENSG00000237589.1 processed_pseudogene HMGN1P32 1 OTTHUMG00000060742.1 pseudo_consens +34987 chr19 HAVANA gene 53772506 53773280 775.0 - 0 ENSG00000229000.1 processed_pseudogene SEPT7P8 1 OTTHUMG00000060777.1 pseudo_consens +34988 chr19 HAVANA gene 53775599 53775882 284.0 + 0 ENSG00000238150.1 processed_pseudogene AC008753.1 1 OTTHUMG00000060778.1 pseudo_consens +34989 chr19 ENSEMBL gene 53787675 53787741 67.0 + 0 ENSG00000199031.1 miRNA MIR371A 3 +34990 chr19 ENSEMBL gene 53787677 53787742 66.0 - 0 ENSG00000284568.1 miRNA MIR371B 3 +34991 chr19 ENSEMBL gene 53787890 53787956 67.0 + 0 ENSG00000199095.1 miRNA MIR372 3 +34992 chr19 HAVANA gene 53787597 53788169 446.0 - 0 ENSG00000269877.3 lincRNA AC008753.3 2 OTTHUMG00000183210.1 ncRNA_host +34993 chr19 ENSEMBL gene 53788705 53788773 69.0 + 0 ENSG00000199143.1 miRNA MIR373 3 +34994 chr19 HAVANA gene 53788782 53789168 387.0 + 0 ENSG00000269564.1 lincRNA AC008753.2 2 OTTHUMG00000060779.1 +34995 chr19 HAVANA gene 53793603 53824394 5088.0 - 0 ENSG00000142405.21 protein_coding NLRP12 2 OTTHUMG00000060776.3 +34996 chr19 HAVANA gene 53864763 53866140 555.0 + 0 ENSG00000232324.1 lincRNA AC008440.3 1 OTTHUMG00000149885.1 +34997 chr19 HAVANA gene 53854581 53869107 439.0 - 0 ENSG00000228323.2 antisense AC008440.1 2 OTTHUMG00000060780.2 +34998 chr19 HAVANA gene 53874626 53876049 423.0 - 0 ENSG00000232220.2 antisense AC008440.2 2 OTTHUMG00000060830.2 +34999 chr19 HAVANA gene 53866223 53876437 3675.0 + 0 ENSG00000179820.15 protein_coding MYADM 2 OTTHUMG00000060775.5 +35000 chr19 HAVANA gene 53879190 53907652 3381.0 + 0 ENSG00000126583.10 protein_coding PRKCG 1 OTTHUMG00000064846.8 +35001 chr19 HAVANA gene 53909335 53943941 2800.0 + 0 ENSG00000105605.7 protein_coding CACNG7 2 OTTHUMG00000064852.3 +35002 chr19 ENSEMBL gene 53982307 53982397 91.0 + 0 ENSG00000284583.1 miRNA MIR935 3 +35003 chr19 HAVANA gene 53963040 53990215 8747.0 + 0 ENSG00000142408.4 protein_coding CACNG8 2 OTTHUMG00000064908.3 ncRNA_host +35004 chr19 HAVANA gene 53992288 54012669 1853.0 + 0 ENSG00000130433.7 protein_coding CACNG6 2 OTTHUMG00000064907.2 +35005 chr19 HAVANA gene 54031412 54031504 93.0 + 0 ENSG00000276206.1 unprocessed_pseudogene AC012314.20 2 OTTHUMG00000188518.1 +35006 chr19 HAVANA gene 54040825 54063953 1405.0 - 0 ENSG00000189068.10 protein_coding VSTM1 2 OTTHUMG00000064906.7 +35007 chr19 HAVANA gene 54069895 54081365 1277.0 - 0 ENSG00000248385.7 protein_coding TARM1 2 OTTHUMG00000064912.5 +35008 chr19 HAVANA gene 54094668 54102692 2084.0 - 0 ENSG00000170909.13 protein_coding OSCAR 2 OTTHUMG00000064966.7 +35009 chr19 HAVANA gene 54102728 54109257 2475.0 + 0 ENSG00000170906.15 protein_coding NDUFA3 2 OTTHUMG00000064972.14 +35010 chr19 HAVANA gene 54107013 54115675 1240.0 - 0 ENSG00000105619.13 protein_coding TFPT 1 OTTHUMG00000065906.9 +35011 chr19 HAVANA gene 54119511 54125343 4158.0 - 0 ENSG00000237017.1 antisense AC245052.4 2 OTTHUMG00000066041.2 +35012 chr19 HAVANA gene 54115410 54131719 2673.0 + 0 ENSG00000105618.13 protein_coding PRPF31 2 OTTHUMG00000066040.13 +35013 chr19 HAVANA gene 54137717 54155708 6880.0 + 0 ENSG00000088038.18 protein_coding CNOT3 1 OTTHUMG00000066468.14 +35014 chr19 HAVANA gene 54155161 54159882 1542.0 - 0 ENSG00000105617.3 protein_coding LENG1 2 OTTHUMG00000066486.2 +35015 chr19 HAVANA gene 54160108 54173250 3062.0 - 0 ENSG00000167608.11 protein_coding TMC4 1 OTTHUMG00000066485.28 +35016 chr19 HAVANA gene 54173412 54189882 5292.0 - 0 ENSG00000125505.16 protein_coding MBOAT7 1 OTTHUMG00000066516.10 +35017 chr19 HAVANA gene 54189938 54194536 3542.0 + 0 ENSG00000170892.10 protein_coding TSEN34 2 OTTHUMG00000066515.30 +35018 chr19 HAVANA gene 54199454 54199971 410.0 - 0 ENSG00000223660.1 lincRNA AC245052.1 2 OTTHUMG00000149883.1 +35019 chr19 HAVANA gene 54209092 54209418 327.0 - 0 ENSG00000224579.1 unprocessed_pseudogene AC245052.2 2 OTTHUMG00000128747.1 +35020 chr19 HAVANA gene 54216278 54223506 3736.0 - 0 ENSG00000204577.11 protein_coding LILRB3 2 OTTHUMG00000066626.10 +35021 chr19 HAVANA gene 54224523 54224881 359.0 + 0 ENSG00000269524.1 lincRNA AC245052.7 2 OTTHUMG00000183027.2 overlapping_locus +35022 chr19 HAVANA gene 54229036 54230213 901.0 + 0 ENSG00000235081.1 processed_pseudogene AC245052.3 1 OTTHUMG00000066633.3 pseudo_consens,overlapping_locus +35023 chr19 HAVANA gene 54236592 54242791 2718.0 - 0 ENSG00000244482.10 protein_coding LILRA6 2 OTTHUMG00000066635.8 +35024 chr19 HAVANA gene 54246101 54247322 219.0 - 0 ENSG00000249189.1 unprocessed_pseudogene AC245052.6 2 OTTHUMG00000066634.1 +35025 chr19 HAVANA gene 54200742 54249003 4371.0 + 0 ENSG00000170889.13 protein_coding RPS9 2 OTTHUMG00000066618.9 overlapping_locus +35026 chr19 HAVANA gene 54249431 54257301 7017.0 - 0 ENSG00000105609.16 protein_coding LILRB5 2 OTTHUMG00000066636.6 +35027 chr19 ENSEMBL gene 54263951 54264053 103.0 - 0 ENSG00000212314.2 snRNA RNU6-1307P 3 +35028 chr19 HAVANA gene 54268005 54269045 649.0 + 0 ENSG00000240296.1 processed_pseudogene AC245052.5 1 OTTHUMG00000149998.1 pseudo_consens,overlapping_locus +35029 chr19 HAVANA gene 54273821 54281184 3810.0 - 0 ENSG00000131042.14 protein_coding LILRB2 2 OTTHUMG00000064896.5 +35030 chr19 ENSEMBL gene 54282109 54282180 72.0 + 0 ENSG00000264703.1 miRNA MIR4752 3 +35031 chr19 HAVANA gene 54294049 54294366 170.0 - 0 ENSG00000240197.1 unprocessed_pseudogene AC245884.5 2 OTTHUMG00000149884.1 +35032 chr19 HAVANA gene 54296194 54296252 59.0 - 0 ENSG00000276758.1 unprocessed_pseudogene AC245884.12 2 OTTHUMG00000065358.6 +35033 chr19 HAVANA gene 54298105 54298814 356.0 - 0 ENSG00000251431.1 unprocessed_pseudogene AC245884.7 2 OTTHUMG00000065810.1 +35034 chr19 HAVANA gene 54301758 54306026 404.0 - 0 ENSG00000234436.1 unprocessed_pseudogene AC245884.2 2 OTTHUMG00000132225.1 +35035 chr19 HAVANA gene 54307070 54313139 1760.0 - 0 ENSG00000187116.13 protein_coding LILRA5 2 OTTHUMG00000065357.3 overlapping_locus +35036 chr19 HAVANA gene 54320204 54321212 1009.0 - 0 ENSG00000249654.1 transcribed_unprocessed_pseudogene VN1R104P 2 OTTHUMG00000065546.2 overlapping_locus +35037 chr19 HAVANA gene 54328272 54331434 1067.0 - 0 ENSG00000250507.1 transcribed_unprocessed_pseudogene AC245884.6 2 OTTHUMG00000065809.2 overlapping_locus +35038 chr19 HAVANA gene 54308915 54337168 1734.0 - 0 ENSG00000275210.1 processed_transcript AC245884.11 2 OTTHUMG00000065356.2 overlapping_locus +35039 chr19 HAVANA gene 54333185 54339150 2171.0 - 0 ENSG00000239961.2 protein_coding LILRA4 2 OTTHUMG00000065355.5 overlapping_locus +35040 chr19 HAVANA gene 54351384 54370558 8071.0 - 0 ENSG00000167613.15 protein_coding LAIR1 2 OTTHUMG00000065545.12 +35041 chr19 HAVANA gene 54379489 54379960 472.0 + 0 ENSG00000237955.1 processed_pseudogene AC245884.4 2 OTTHUMG00000128473.1 +35042 chr19 HAVANA gene 54434183 54434665 483.0 + 0 ENSG00000268496.1 sense_intronic AC245884.9 2 OTTHUMG00000183030.1 overlapping_locus +35043 chr19 HAVANA gene 54430654 54434698 529.0 - 0 ENSG00000227407.1 antisense AC245884.1 2 OTTHUMG00000065547.1 +35044 chr19 HAVANA gene 54415219 54436900 7068.0 + 0 ENSG00000167614.13 protein_coding TTYH1 2 OTTHUMG00000065544.10 overlapping_locus +35045 chr19 HAVANA gene 54438010 54438346 337.0 - 0 ENSG00000269873.1 lincRNA AC245884.10 2 OTTHUMG00000183031.1 +35046 chr19 HAVANA gene 54438665 54439544 880.0 - 0 ENSG00000267838.2 lincRNA AC245884.8 2 OTTHUMG00000150514.2 +35047 chr19 HAVANA gene 54446830 54447047 218.0 + 0 ENSG00000235681.1 processed_pseudogene AC245884.3 2 OTTHUMG00000065702.1 +35048 chr19 HAVANA gene 54444813 54449045 1248.0 - 0 ENSG00000226696.5 antisense LENG8-AS1 2 OTTHUMG00000133686.6 +35049 chr19 HAVANA gene 54448887 54462037 6469.0 + 0 ENSG00000167615.16 protein_coding LENG8 1 OTTHUMG00000065548.14 +35050 chr19 HAVANA gene 54461796 54463711 1916.0 - 0 ENSG00000275183.1 protein_coding LENG9 2 OTTHUMG00000188273.2 +35051 chr19 HAVANA gene 54465026 54473264 903.0 - 0 ENSG00000167617.2 protein_coding CDC42EP5 2 OTTHUMG00000065699.1 +35052 chr19 HAVANA gene 54497879 54510687 1078.0 + 0 ENSG00000167618.9 protein_coding LAIR2 2 OTTHUMG00000065697.4 +35053 chr19 HAVANA gene 54521723 54522031 309.0 + 0 ENSG00000213016.3 unprocessed_pseudogene AC245036.1 2 OTTHUMG00000065698.2 +35054 chr19 HAVANA gene 54532692 54545771 5125.0 + 0 ENSG00000104970.11 transcribed_unprocessed_pseudogene KIR3DX1 2 OTTHUMG00000065696.8 +35055 chr19 HAVANA gene 54551970 54552256 287.0 + 0 ENSG00000235181.1 unprocessed_pseudogene AC245036.2 2 OTTHUMG00000065694.1 +35056 chr19 HAVANA gene 54589441 54590287 847.0 + 0 ENSG00000269271.1 lincRNA AC245036.5 2 OTTHUMG00000183032.2 +35057 chr19 HAVANA gene 54572920 54590287 5349.0 + 0 ENSG00000239998.5 protein_coding LILRA2 1 OTTHUMG00000065703.6 +35058 chr19 HAVANA gene 54593582 54602090 3587.0 + 0 ENSG00000104974.11 protein_coding LILRA1 2 OTTHUMG00000065701.2 +35059 chr19 HAVANA gene 54607870 54608376 319.0 + 0 ENSG00000238094.1 unprocessed_pseudogene AC245036.4 2 OTTHUMG00000065704.2 +35060 chr19 HAVANA gene 54617158 54637528 5008.0 + 0 ENSG00000104972.15 protein_coding LILRB1 2 OTTHUMG00000065695.8 +35061 chr19 HAVANA gene 54635722 54638892 554.0 - 0 ENSG00000224730.1 antisense LILRB1-AS1 2 OTTHUMG00000149999.2 +35062 chr19 ENSEMBL gene 54645309 54645383 75.0 + 0 ENSG00000277636.1 miRNA MIR8061 3 +35063 chr19 HAVANA gene 54647944 54648853 910.0 + 0 ENSG00000242856.3 transcribed_processed_pseudogene VN1R105P 2 OTTHUMG00000065711.1 overlapping_locus +35064 chr19 HAVANA gene 54652085 54652230 146.0 + 0 ENSG00000237323.1 unprocessed_pseudogene AC245036.3 2 OTTHUMG00000065710.1 overlapping_locus +35065 chr19 HAVANA gene 54643889 54670359 6328.0 + 0 ENSG00000186818.12 protein_coding LILRB4 2 OTTHUMG00000065879.14 ncRNA_host,overlapping_locus +35066 chr19 HAVANA gene 54671231 54672591 579.0 + 0 ENSG00000225370.1 unprocessed_pseudogene AC243962.1 2 OTTHUMG00000065888.1 +35067 chr19 HAVANA gene 54696604 54700905 1370.0 + 0 ENSG00000186152.6 unprocessed_pseudogene LILRP1 2 OTTHUMG00000065881.2 +35068 chr19 HAVANA gene 54703952 54704235 284.0 + 0 ENSG00000228790.1 unprocessed_pseudogene AC245128.2 2 OTTHUMG00000102121.1 +35069 chr19 HAVANA gene 54707916 54713453 2127.0 + 0 ENSG00000170858.10 transcribed_processed_pseudogene LILRP2 2 OTTHUMG00000065886.3 +35070 chr19 HAVANA gene 54724479 54736536 1691.0 + 0 ENSG00000242019.1 protein_coding KIR3DL3 2 OTTHUMG00000065884.2 overlapping_locus +35071 chr19 HAVANA gene 54738515 54753052 1590.0 + 0 ENSG00000243772.7 protein_coding KIR2DL3 2 OTTHUMG00000065887.1 overlapping_locus +35072 chr19 HAVANA gene 54755023 54767371 1331.0 + 0 ENSG00000242473.1 unprocessed_pseudogene KIR2DP1 2 OTTHUMG00000065882.1 overlapping_locus +35073 chr19 HAVANA gene 54769811 54784322 1674.0 + 0 ENSG00000125498.19 protein_coding KIR2DL1 2 OTTHUMG00000065885.3 overlapping_locus +35074 chr19 HAVANA gene 54786355 54790318 628.0 + 0 ENSG00000264257.1 transcribed_unprocessed_pseudogene KIR3DP1 2 OTTHUMG00000178663.1 overlapping_locus +35075 chr19 HAVANA gene 54724496 54798285 1294.0 + 0 ENSG00000215765.3 processed_transcript AC245128.1 2 OTTHUMG00000065883.2 overlapping_locus +35076 chr19 HAVANA gene 54803535 54814517 1724.0 + 0 ENSG00000189013.14 protein_coding KIR2DL4 2 OTTHUMG00000065880.6 +35077 chr19 HAVANA gene 54816468 54830778 1871.0 + 0 ENSG00000167633.18 protein_coding KIR3DL1 2 OTTHUMG00000065933.3 +35078 chr19 HAVANA gene 54832676 54848569 1608.0 + 0 ENSG00000221957.8 polymorphic_pseudogene KIR2DS4 1 OTTHUMG00000065932.6 pseudo_consens +35079 chr19 HAVANA gene 54850443 54867207 1877.0 + 0 ENSG00000240403.5 protein_coding KIR3DL2 2 OTTHUMG00000065935.1 +35080 chr19 ENSEMBL gene 54868939 54869045 107.0 - 0 ENSG00000199308.1 snRNA RNU6-222P 3 +35081 chr19 HAVANA gene 54874248 54890472 2366.0 + 0 ENSG00000186431.18 protein_coding FCAR 2 OTTHUMG00000065936.7 +35082 chr19 HAVANA gene 54890673 54891420 748.0 + 0 ENSG00000268734.1 lincRNA AC245128.3 2 OTTHUMG00000183033.1 +35083 chr19 HAVANA gene 54906150 54916140 1893.0 + 0 ENSG00000189430.12 protein_coding NCR1 1 OTTHUMG00000183212.3 +35084 chr19 HAVANA gene 54948864 54948993 130.0 + 0 ENSG00000275012.1 processed_pseudogene AC011476.8 2 OTTHUMG00000188519.1 +35085 chr19 HAVANA gene 54923509 54966312 3914.0 - 0 ENSG00000167634.12 protein_coding NLRP7 2 OTTHUMG00000180428.5 +35086 chr19 HAVANA gene 54973817 54974417 307.0 + 0 ENSG00000243494.1 processed_pseudogene AC011476.1 1 OTTHUMG00000158316.1 pseudo_consens,overlapping_locus +35087 chr19 HAVANA gene 54953130 55001142 6313.0 + 0 ENSG00000022556.15 protein_coding NLRP2 2 OTTHUMG00000167763.6 overlapping_locus +35088 chr19 HAVANA gene 55013705 55038264 2703.0 - 0 ENSG00000088053.11 protein_coding GP6 2 OTTHUMG00000159709.3 overlapping_locus +35089 chr19 HAVANA gene 55006193 55048086 1374.0 + 0 ENSG00000267265.5 antisense AC011476.3 2 OTTHUMG00000180476.1 +35090 chr19 HAVANA gene 55027593 55053928 1271.0 - 0 ENSG00000267149.2 processed_transcript AC011476.2 2 OTTHUMG00000180477.2 overlapping_locus +35091 chr19 HAVANA gene 55039108 55071291 8594.0 - 0 ENSG00000160439.15 protein_coding RDH13 2 OTTHUMG00000180478.3 overlapping_locus +35092 chr19 HAVANA gene 55072020 55087923 5341.0 + 0 ENSG00000131037.14 protein_coding EPS8L1 1 OTTHUMG00000180513.3 +35093 chr19 HAVANA gene 55090913 55117559 7726.0 - 0 ENSG00000125503.12 protein_coding PPP1R12C 2 OTTHUMG00000180540.3 +35094 chr19 HAVANA gene 55119250 55120383 488.0 - 0 ENSG00000267507.1 processed_pseudogene AC010327.2 2 OTTHUMG00000180541.1 +35095 chr19 ENSEMBL gene 55123225 55123292 68.0 - 0 ENSG00000275863.1 miRNA MIR7975 3 +35096 chr19 HAVANA gene 55132794 55149354 2171.0 - 0 ENSG00000105048.16 protein_coding TNNT1 2 OTTHUMG00000180542.7 +35097 chr19 HAVANA gene 55151767 55157773 2034.0 - 0 ENSG00000129991.12 protein_coding TNNI3 2 OTTHUMG00000180589.5 overlapping_locus +35098 chr19 HAVANA gene 55154757 55160671 975.0 - 0 ENSG00000267110.1 protein_coding AC010327.1 2 OTTHUMG00000180667.3 overlapping_locus +35099 chr19 HAVANA gene 55158661 55166722 3302.0 - 0 ENSG00000167646.13 protein_coding DNAAF3 2 OTTHUMG00000128547.9 overlapping_locus +35100 chr19 ENSEMBL gene 55167171 55167274 104.0 + 0 ENSG00000239137.1 snoRNA RF01210 3 +35101 chr19 HAVANA gene 55158939 55177540 1643.0 + 0 ENSG00000267577.1 antisense AC010327.3 2 OTTHUMG00000180668.2 ncRNA_host +35102 chr19 HAVANA gene 55171199 55180441 5347.0 - 0 ENSG00000129990.14 protein_coding SYT5 2 OTTHUMG00000180669.3 +35103 chr19 HAVANA gene 55181248 55209506 4344.0 - 0 ENSG00000080031.9 protein_coding PTPRH 2 OTTHUMG00000180701.2 +35104 chr19 HAVANA gene 55216660 55221616 1577.0 + 0 ENSG00000267649.1 lincRNA AC010327.4 2 OTTHUMG00000180702.1 +35105 chr19 HAVANA gene 55226639 55229264 2626.0 - 0 ENSG00000180089.5 protein_coding TMEM86B 2 OTTHUMG00000187285.1 overlapping_locus +35106 chr19 HAVANA gene 55227219 55230279 3061.0 - 0 ENSG00000276570.1 processed_transcript AC010327.5 2 OTTHUMG00000180703.1 overlapping_locus +35107 chr19 ENSEMBL gene 55230885 55230952 68.0 - 0 ENSG00000275519.1 miRNA MIR6804 3 +35108 chr19 ENSEMBL gene 55239912 55239976 65.0 - 0 ENSG00000278328.1 miRNA MIR6802 3 +35109 chr19 ENSEMBL gene 55245186 55245250 65.0 - 0 ENSG00000278264.1 miRNA MIR6803 3 +35110 chr19 HAVANA gene 55229780 55258995 6583.0 - 0 ENSG00000105063.18 protein_coding PPP6R1 2 OTTHUMG00000180704.2 ncRNA_host,overlapping_locus +35111 chr19 HAVANA gene 55262231 55280381 2159.0 - 0 ENSG00000133265.10 protein_coding HSPBP1 1 OTTHUMG00000180705.2 +35112 chr19 HAVANA gene 55312029 55312495 359.0 - 0 ENSG00000268729.1 antisense AC020922.2 2 OTTHUMG00000183397.1 +35113 chr19 HAVANA gene 55282072 55312533 3841.0 + 0 ENSG00000160469.16 protein_coding BRSK1 1 OTTHUMG00000180735.4 +35114 chr19 HAVANA gene 55312801 55334048 1713.0 - 0 ENSG00000180061.9 protein_coding TMEM150B 2 OTTHUMG00000180709.5 +35115 chr19 HAVANA gene 55338945 55339283 339.0 - 0 ENSG00000276831.1 lincRNA AC020922.4 2 OTTHUMG00000186783.1 +35116 chr19 HAVANA gene 55339853 55348120 4775.0 + 0 ENSG00000133247.13 protein_coding KMT5C 2 OTTHUMG00000150483.4 +35117 chr19 HAVANA gene 55349306 55354814 3815.0 - 0 ENSG00000160471.12 protein_coding COX6B2 2 OTTHUMG00000180774.6 overlapping_locus +35118 chr19 HAVANA gene 55352301 55359516 3058.0 - 0 ENSG00000267706.3 protein_coding AC020922.1 2 OTTHUMG00000180784.4 overlapping_locus +35119 chr19 HAVANA gene 55354908 55363260 3274.0 - 0 ENSG00000180043.11 protein_coding FAM71E2 2 OTTHUMG00000170357.6 overlapping_locus +35120 chr19 HAVANA gene 55364389 55370463 2671.0 - 0 ENSG00000095752.6 protein_coding IL11 2 OTTHUMG00000180789.2 +35121 chr19 HAVANA gene 55377579 55378125 547.0 - 0 ENSG00000269275.1 antisense AC020922.3 2 OTTHUMG00000183398.1 +35122 chr19 HAVANA gene 55376836 55378244 593.0 + 0 ENSG00000160472.4 protein_coding TMEM190 2 OTTHUMG00000180794.1 +35123 chr19 HAVANA gene 55379245 55384598 1000.0 - 0 ENSG00000233493.3 protein_coding TMEM238 2 OTTHUMG00000180795.1 +35124 chr19 ENSEMBL gene 55388181 55388242 62.0 + 0 ENSG00000284029.1 miRNA MIR6805 3 +35125 chr19 HAVANA gene 55385345 55403250 6933.0 + 0 ENSG00000108107.14 protein_coding RPL28 1 OTTHUMG00000171991.4 ncRNA_host +35126 chr19 HAVANA gene 55399745 55407777 2788.0 - 0 ENSG00000108106.13 protein_coding UBE2S 1 OTTHUMG00000180811.4 +35127 chr19 HAVANA gene 55428740 55442863 6083.0 - 0 ENSG00000187902.11 protein_coding SHISA7 2 OTTHUMG00000154240.2 +35128 chr19 HAVANA gene 55452985 55462343 4408.0 - 0 ENSG00000063241.7 protein_coding ISOC2 2 OTTHUMG00000180830.2 +35129 chr19 HAVANA gene 55463002 55464707 1292.0 - 0 ENSG00000283567.1 protein_coding C19orf85 2 OTTHUMG00000191751.1 +35130 chr19 HAVANA gene 55467438 55467934 497.0 - 0 ENSG00000279063.1 TEC AC008735.5 2 OTTHUMG00000181844.1 +35131 chr19 HAVANA gene 55475983 55476482 500.0 - 0 ENSG00000269859.1 antisense AC008735.3 2 OTTHUMG00000183416.1 +35132 chr19 HAVANA gene 55476332 55484487 3851.0 + 0 ENSG00000197483.9 protein_coding ZNF628 2 OTTHUMG00000150396.4 +35133 chr19 HAVANA gene 55485004 55487568 2163.0 + 0 ENSG00000090971.4 protein_coding NAT14 2 OTTHUMG00000180854.3 +35134 chr19 HAVANA gene 55488404 55519098 7314.0 + 0 ENSG00000179954.15 protein_coding SSC5D 1 OTTHUMG00000180855.4 +35135 chr19 HAVANA gene 55529733 55537089 1092.0 - 0 ENSG00000187550.8 protein_coding SBK2 2 OTTHUMG00000155830.2 +35136 chr19 HAVANA gene 55540656 55545543 1520.0 - 0 ENSG00000231274.5 protein_coding SBK3 1 OTTHUMG00000155831.6 +35137 chr19 HAVANA gene 55576770 55580845 3321.0 - 0 ENSG00000218891.4 protein_coding ZNF579 2 OTTHUMG00000180857.4 +35138 chr19 HAVANA gene 55591371 55601970 6790.0 - 0 ENSG00000179943.7 protein_coding FIZ1 1 OTTHUMG00000180858.4 +35139 chr19 HAVANA gene 55600022 55603138 1360.0 + 0 ENSG00000171443.6 protein_coding ZNF524 2 OTTHUMG00000180859.3 +35140 chr19 HAVANA gene 55612490 55613097 608.0 - 0 ENSG00000276488.1 antisense AC008735.4 2 OTTHUMG00000186784.1 +35141 chr19 HAVANA gene 55605405 55617269 4005.0 + 0 ENSG00000261221.3 protein_coding ZNF865 2 OTTHUMG00000177108.1 +35142 chr19 HAVANA gene 55620742 55624601 2058.0 - 0 ENSG00000179922.5 protein_coding ZNF784 2 OTTHUMG00000180860.2 +35143 chr19 HAVANA gene 55635016 55643469 2692.0 + 0 ENSG00000213015.8 protein_coding ZNF580 2 OTTHUMG00000180868.3 overlapping_locus +35144 chr19 HAVANA gene 55635459 55645622 1736.0 + 0 ENSG00000171425.9 protein_coding ZNF581 2 OTTHUMG00000180869.4 overlapping_locus +35145 chr19 HAVANA gene 55641062 55653161 2709.0 + 0 ENSG00000173581.7 protein_coding CCDC106 2 OTTHUMG00000180907.2 overlapping_locus +35146 chr19 HAVANA gene 55670632 55672069 802.0 + 0 ENSG00000267096.1 sense_intronic AC008735.1 2 OTTHUMG00000180910.1 overlapping_locus +35147 chr19 HAVANA gene 55661901 55674715 561.0 - 0 ENSG00000267523.1 antisense AC008735.2 2 OTTHUMG00000180909.1 +35148 chr19 HAVANA gene 55654146 55674715 4115.0 + 0 ENSG00000063244.12 protein_coding U2AF2 2 OTTHUMG00000180908.4 overlapping_locus +35149 chr19 HAVANA gene 55694118 55694558 441.0 - 0 ENSG00000267117.1 antisense AC010525.1 2 OTTHUMG00000180912.1 +35150 chr19 HAVANA gene 55705978 55706172 195.0 - 0 ENSG00000267689.1 processed_pseudogene AC010525.2 2 OTTHUMG00000180919.1 +35151 chr19 HAVANA gene 55707550 55707855 306.0 + 0 ENSG00000268593.3 processed_pseudogene AC008749.1 2 OTTHUMG00000183283.1 overlapping_locus +35152 chr19 HAVANA gene 55675226 55709858 17616.0 + 0 ENSG00000063245.14 protein_coding EPN1 2 OTTHUMG00000180911.5 overlapping_locus +35153 chr19 ENSEMBL gene 55737285 55737600 316.0 + 0 ENSG00000222524.1 misc_RNA RN7SKP109 3 +35154 chr19 HAVANA gene 55708432 55738402 3599.0 - 0 ENSG00000185792.9 protein_coding NLRP9 2 OTTHUMG00000180920.3 +35155 chr19 HAVANA gene 55759014 55763175 1035.0 + 0 ENSG00000223638.3 protein_coding RFPL4A 2 OTTHUMG00000165449.2 +35156 chr19 HAVANA gene 55769141 55773179 908.0 + 0 ENSG00000229292.1 protein_coding RFPL4AL1 2 OTTHUMG00000165450.2 +35157 chr19 HAVANA gene 55777553 55778900 850.0 + 0 ENSG00000255238.1 processed_pseudogene RFPL4AP1 1 OTTHUMG00000165451.1 +35158 chr19 HAVANA gene 55785397 55836800 4312.0 - 0 ENSG00000179873.14 protein_coding NLRP11 2 OTTHUMG00000180921.7 +35159 chr19 HAVANA gene 55836578 55881854 3903.0 + 0 ENSG00000160505.15 protein_coding NLRP4 1 OTTHUMG00000181734.4 +35160 chr19 HAVANA gene 55891699 55932336 3580.0 - 0 ENSG00000173572.11 protein_coding NLRP13 2 OTTHUMG00000167839.3 +35161 chr19 HAVANA gene 55947832 55988629 3934.0 + 0 ENSG00000179709.8 protein_coding NLRP8 2 OTTHUMG00000181754.2 +35162 chr19 HAVANA gene 55999726 56061813 4080.0 + 0 ENSG00000171487.14 protein_coding NLRP5 2 OTTHUMG00000149887.3 +35163 chr19 HAVANA gene 56066684 56078801 1661.0 + 0 ENSG00000267522.1 lincRNA LINC01864 2 OTTHUMG00000181876.1 +35164 chr19 ENSEMBL gene 56105416 56105510 95.0 + 0 ENSG00000223060.1 misc_RNA RF00019 3 +35165 chr19 HAVANA gene 56087366 56121280 3671.0 - 0 ENSG00000142409.5 protein_coding ZNF787 2 OTTHUMG00000181760.5 +35166 chr19 HAVANA gene 56127236 56127466 231.0 - 0 ENSG00000279959.1 TEC AC024580.2 2 OTTHUMG00000183286.1 +35167 chr19 HAVANA gene 56149817 56150490 674.0 + 0 ENSG00000279794.1 TEC AC024580.1 2 OTTHUMG00000181762.1 overlapping_locus +35168 chr19 HAVANA gene 56132599 56160893 7239.0 + 0 ENSG00000167685.14 protein_coding ZNF444 2 OTTHUMG00000181761.3 overlapping_locus +35169 chr19 HAVANA gene 56176020 56185775 938.0 + 0 ENSG00000197487.8 protein_coding GALP 2 OTTHUMG00000181826.2 +35170 chr19 HAVANA gene 56189570 56197920 2059.0 - 0 ENSG00000197213.9 protein_coding ZSCAN5B 2 OTTHUMG00000181827.4 +35171 chr19 HAVANA gene 56202301 56209452 1892.0 + 0 ENSG00000204532.6 protein_coding ZSCAN5C 2 OTTHUMG00000167475.1 +35172 chr19 HAVANA gene 56217168 56217777 610.0 - 0 ENSG00000242411.2 processed_pseudogene AC011506.1 1 OTTHUMG00000158320.2 pseudo_consens +35173 chr19 HAVANA gene 56244043 56247482 1488.0 + 0 ENSG00000267908.2 unprocessed_pseudogene ZSCAN5DP 2 OTTHUMG00000183254.2 +35174 chr19 HAVANA gene 56272769 56310450 2326.0 + 0 ENSG00000267710.8 protein_coding EDDM13 2 OTTHUMG00000182076.5 +35175 chr19 HAVANA gene 56311928 56312486 559.0 - 0 ENSG00000267298.1 sense_intronic AC006116.5 2 OTTHUMG00000182077.1 overlapping_locus +35176 chr19 ENSEMBL gene 56316524 56316636 113.0 - 0 ENSG00000200646.1 misc_RNA RF00019 3 +35177 chr19 HAVANA gene 56317177 56318008 832.0 - 0 ENSG00000213014.3 processed_pseudogene VN2R17P 2 OTTHUMG00000182139.1 overlapping_locus +35178 chr19 HAVANA gene 56319790 56322310 2171.0 - 0 ENSG00000266907.1 processed_pseudogene AC006116.1 1 OTTHUMG00000182140.1 pseudo_consens,overlapping_locus +35179 chr19 HAVANA gene 56338288 56338648 361.0 - 0 ENSG00000267145.1 processed_pseudogene AC006116.3 2 OTTHUMG00000181957.1 overlapping_locus +35180 chr19 HAVANA gene 56314703 56341287 2537.0 + 0 ENSG00000267549.5 antisense AC006116.8 2 OTTHUMG00000182078.3 +35181 chr19 HAVANA gene 56342432 56343419 988.0 - 0 ENSG00000266932.1 transcribed_processed_pseudogene AC006116.2 1 OTTHUMG00000181958.2 pseudo_consens,overlapping_locus +35182 chr19 HAVANA gene 56347081 56348183 1103.0 - 0 ENSG00000267429.1 sense_intronic AC006116.6 2 OTTHUMG00000181963.1 overlapping_locus +35183 chr19 HAVANA gene 56354493 56368053 1040.0 - 0 ENSG00000267606.1 lincRNA AC006116.9 2 OTTHUMG00000182136.1 overlapping_locus +35184 chr19 HAVANA gene 56219670 56368383 8039.0 - 0 ENSG00000131848.9 protein_coding ZSCAN5A 1 OTTHUMG00000181883.6 ncRNA_host,overlapping_locus +35185 chr19 HAVANA gene 56376704 56377284 581.0 - 0 ENSG00000267776.1 sense_intronic AC006116.10 2 OTTHUMG00000182150.1 overlapping_locus +35186 chr19 HAVANA gene 56377037 56377792 756.0 - 0 ENSG00000267459.1 transcribed_processed_pseudogene AC006116.7 2 OTTHUMG00000182174.1 overlapping_locus +35187 chr19 HAVANA gene 56368099 56379828 4690.0 + 0 ENSG00000240225.10 transcribed_unprocessed_pseudogene ZNF542P 2 OTTHUMG00000140382.3 +35188 chr19 HAVANA gene 56386226 56386690 465.0 + 0 ENSG00000267781.1 processed_pseudogene SLC25A36P1 1 OTTHUMG00000182175.1 pseudo_consens +35189 chr19 HAVANA gene 56387412 56388424 452.0 + 0 ENSG00000267192.1 antisense AC006116.4 2 OTTHUMG00000181959.1 +35190 chr19 HAVANA gene 56375846 56393545 3350.0 - 0 ENSG00000018869.16 protein_coding ZNF582 2 OTTHUMG00000181939.5 overlapping_locus +35191 chr19 HAVANA gene 56393656 56399172 2037.0 + 0 ENSG00000267454.5 lincRNA ZNF582-AS1 2 OTTHUMG00000182151.1 overlapping_locus +35192 chr19 HAVANA gene 56397966 56436035 8060.0 + 0 ENSG00000198440.9 protein_coding ZNF583 2 OTTHUMG00000168874.5 overlapping_locus +35193 chr19 HAVANA gene 56439325 56478065 8810.0 - 0 ENSG00000198046.11 protein_coding ZNF667 1 OTTHUMG00000181941.4 +35194 chr19 HAVANA gene 56480397 56483977 331.0 - 0 ENSG00000279405.1 TEC AC004696.2 2 OTTHUMG00000183256.1 +35195 chr19 HAVANA gene 56485923 56494280 607.0 - 0 ENSG00000276578.1 unprocessed_pseudogene AC004696.1 2 OTTHUMG00000188041.1 +35196 chr19 HAVANA gene 56477250 56500666 3629.0 + 0 ENSG00000166770.10 lincRNA ZNF667-AS1 2 OTTHUMG00000181942.4 +35197 chr19 HAVANA gene 56507843 56530221 6783.0 + 0 ENSG00000196263.7 protein_coding ZNF471 1 OTTHUMG00000181943.3 +35198 chr19 HAVANA gene 56535299 56535763 465.0 + 0 ENSG00000267224.1 lincRNA AC005498.1 2 OTTHUMG00000182161.1 +35199 chr19 HAVANA gene 56536156 56538575 1105.0 - 0 ENSG00000267421.6 lincRNA AC005498.2 2 OTTHUMG00000181946.3 +35200 chr19 HAVANA gene 56538948 56556810 6974.0 + 0 ENSG00000196867.7 protein_coding ZFP28 2 OTTHUMG00000181944.4 +35201 chr19 HAVANA gene 56545566 56567411 2045.0 - 0 ENSG00000269696.1 antisense AC005498.3 2 OTTHUMG00000182205.1 +35202 chr19 HAVANA gene 56567511 56588911 9627.0 + 0 ENSG00000197016.11 protein_coding ZNF470 1 OTTHUMG00000182141.5 +35203 chr19 HAVANA gene 56589495 56590281 551.0 - 0 ENSG00000268847.1 unprocessed_pseudogene SIGLEC31P 2 OTTHUMG00000182191.2 +35204 chr19 HAVANA gene 56595264 56626481 6170.0 + 0 ENSG00000197951.9 protein_coding ZNF71 2 OTTHUMG00000182157.5 overlapping_locus +35205 chr19 HAVANA gene 56643145 56655766 1076.0 + 0 ENSG00000268182.5 protein_coding SMIM17 2 OTTHUMG00000177861.1 +35206 chr19 HAVANA gene 56661981 56671783 3473.0 - 0 ENSG00000127903.13 protein_coding ZNF835 2 OTTHUMG00000182158.4 +35207 chr19 HAVANA gene 56672574 56673901 1328.0 - 0 ENSG00000268568.1 lincRNA AC007228.1 2 OTTHUMG00000182185.1 +35208 chr19 HAVANA gene 56672268 56684653 517.0 + 0 ENSG00000268352.1 lincRNA AC006115.1 2 OTTHUMG00000182159.1 +35209 chr19 HAVANA gene 56690686 56761215 789.0 + 0 ENSG00000268067.2 transcribed_unprocessed_pseudogene OR5AH1P 2 OTTHUMG00000182169.2 overlapping_locus +35210 chr19 HAVANA gene 56707293 56791197 560.0 + 0 ENSG00000284729.1 antisense AC006115.3 2 OTTHUMG00000182160.2 overlapping_locus +35211 chr19 HAVANA gene 56793048 56793249 202.0 - 0 ENSG00000268407.1 processed_pseudogene AC006115.2 2 OTTHUMG00000182177.1 overlapping_locus +35212 chr19 HAVANA gene 56765344 56799646 2129.0 + 0 ENSG00000269793.6 antisense ZIM2-AS1 2 OTTHUMG00000192352.1 overlapping_locus +35213 chr19 HAVANA gene 56810077 56840728 9769.0 - 0 ENSG00000198300.13 protein_coding PEG3 1 OTTHUMG00000171954.9 overlapping_locus +35214 chr19 HAVANA gene 56774547 56840729 3066.0 - 0 ENSG00000269699.6 protein_coding ZIM2 2 OTTHUMG00000171953.5 overlapping_locus +35215 chr19 ENSEMBL gene 56848068 56848204 137.0 + 0 ENSG00000274777.1 misc_RNA AC004792.1 3 +35216 chr19 HAVANA gene 56840902 56848556 2002.0 + 0 ENSG00000268654.1 lincRNA MIMT1 2 OTTHUMG00000182170.2 ncRNA_host +35217 chr19 HAVANA gene 56922018 56922213 196.0 + 0 ENSG00000269786.1 processed_pseudogene AC044792.1 2 OTTHUMG00000182173.1 +35218 chr19 HAVANA gene 57065334 57066139 806.0 + 0 ENSG00000268483.1 processed_pseudogene RPL7AP69 1 OTTHUMG00000158331.2 pseudo_consens +35219 chr19 HAVANA gene 57111120 57112027 908.0 - 0 ENSG00000274219.1 unprocessed_pseudogene AC025588.4 2 OTTHUMG00000188042.1 +35220 chr19 HAVANA gene 57119138 57131926 3894.0 + 0 ENSG00000131864.10 protein_coding USP29 2 OTTHUMG00000183101.2 retrogene +35221 chr19 HAVANA gene 57134096 57145202 2627.0 - 0 ENSG00000141946.1 protein_coding ZIM3 2 OTTHUMG00000183102.1 +35222 chr19 HAVANA gene 57150513 57150978 466.0 + 0 ENSG00000270293.1 processed_pseudogene AC025588.2 1 OTTHUMG00000184929.1 pseudo_consens +35223 chr19 HAVANA gene 57151587 57151860 274.0 - 0 ENSG00000270790.1 processed_pseudogene AC025588.3 2 OTTHUMG00000184930.1 +35224 chr19 HAVANA gene 57154021 57167443 1006.0 - 0 ENSG00000258873.2 protein_coding DUXA 2 OTTHUMG00000170714.3 +35225 chr19 HAVANA gene 57175233 57177921 2072.0 + 0 ENSG00000268379.1 processed_pseudogene AC025588.1 1 OTTHUMG00000183103.1 pseudo_consens +35226 chr19 HAVANA gene 57191500 57222846 12532.0 + 0 ENSG00000083844.10 protein_coding ZNF264 1 OTTHUMG00000183104.3 +35227 chr19 HAVANA gene 57230802 57235548 1948.0 + 0 ENSG00000105146.12 protein_coding AURKC 1 OTTHUMG00000183106.2 +35228 chr19 HAVANA gene 57240685 57255135 2523.0 + 0 ENSG00000204524.6 protein_coding ZNF805 2 OTTHUMG00000183219.2 +35229 chr19 HAVANA gene 57261354 57262738 1385.0 + 0 ENSG00000268713.1 lincRNA AC005261.3 2 OTTHUMG00000183220.1 +35230 chr19 HAVANA gene 57267220 57280334 738.0 - 0 ENSG00000267871.5 antisense ZNF460-AS1 2 OTTHUMG00000183221.1 +35231 chr19 HAVANA gene 57280051 57293569 3505.0 + 0 ENSG00000197714.8 protein_coding ZNF460 1 OTTHUMG00000183222.2 +35232 chr19 HAVANA gene 57293083 57294469 1387.0 - 0 ENSG00000279541.1 TEC AC005261.5 2 OTTHUMG00000183223.1 +35233 chr19 HAVANA gene 57304305 57308562 4258.0 + 0 ENSG00000268205.1 lincRNA AC005261.1 2 OTTHUMG00000183241.1 +35234 chr19 HAVANA gene 57317208 57317562 355.0 - 0 ENSG00000268723.1 processed_pseudogene AC005261.4 1 OTTHUMG00000183242.1 pseudo_consens +35235 chr19 HAVANA gene 57320509 57330776 3659.0 + 0 ENSG00000178229.7 protein_coding ZNF543 2 OTTHUMG00000183243.1 +35236 chr19 HAVANA gene 57350848 57352012 1045.0 - 0 ENSG00000268678.1 antisense AC005261.2 2 OTTHUMG00000183244.1 +35237 chr19 HAVANA gene 57351307 57359898 4609.0 + 0 ENSG00000131845.14 protein_coding ZNF304 1 OTTHUMG00000183245.1 +35238 chr19 HAVANA gene 57363511 57365353 1843.0 + 0 ENSG00000256060.2 protein_coding TRAPPC2B 1 OTTHUMG00000183279.1 overlapping_locus,retrogene +35239 chr19 HAVANA gene 57363477 57379565 3568.0 + 0 ENSG00000152433.14 protein_coding ZNF547 2 OTTHUMG00000183246.4 overlapping_locus +35240 chr19 HAVANA gene 57363566 57398584 456.0 + 0 ENSG00000268133.1 protein_coding AC003002.1 2 OTTHUMG00000183282.2 overlapping_locus +35241 chr19 HAVANA gene 57389850 57402992 6161.0 + 0 ENSG00000188785.11 protein_coding ZNF548 1 OTTHUMG00000183281.4 overlapping_locus +35242 chr19 HAVANA gene 57389884 57419994 1210.0 + 0 ENSG00000269533.5 protein_coding AC003002.3 2 OTTHUMG00000183372.2 overlapping_locus +35243 chr19 HAVANA gene 57411163 57421939 3762.0 + 0 ENSG00000186272.12 protein_coding ZNF17 2 OTTHUMG00000183371.2 overlapping_locus +35244 chr19 HAVANA gene 57394183 57438457 521.0 + 0 ENSG00000268533.1 protein_coding AC003002.2 1 OTTHUMG00000183378.1 overlapping_locus +35245 chr19 HAVANA gene 57435329 57445485 3017.0 + 0 ENSG00000186230.6 protein_coding ZNF749 1 OTTHUMG00000150372.4 overlapping_locus +35246 chr19 HAVANA gene 57449689 57453011 3323.0 + 0 ENSG00000276449.1 antisense AC004076.2 2 OTTHUMG00000183379.1 +35247 chr19 HAVANA gene 57454790 57457142 2353.0 - 0 ENSG00000178201.4 protein_coding VN1R1 2 OTTHUMG00000183400.1 overlapping_locus +35248 chr19 HAVANA gene 57459912 57460120 209.0 + 0 ENSG00000268545.1 unprocessed_pseudogene VN1R107P 2 OTTHUMG00000183401.1 +35249 chr19 HAVANA gene 57437970 57477536 1028.0 - 0 ENSG00000268163.1 protein_coding AC004076.1 2 OTTHUMG00000183399.1 overlapping_locus +35250 chr19 HAVANA gene 57466663 57477570 6096.0 - 0 ENSG00000197128.11 protein_coding ZNF772 1 OTTHUMG00000168007.3 overlapping_locus +35251 chr19 HAVANA gene 57477649 57482996 664.0 + 0 ENSG00000268266.1 lincRNA AC003005.2 2 OTTHUMG00000183402.1 +35252 chr19 HAVANA gene 57487711 57496097 8008.0 + 0 ENSG00000105136.20 protein_coding ZNF419 2 OTTHUMG00000037073.10 overlapping_locus +35253 chr19 HAVANA gene 57487718 57505381 603.0 + 0 ENSG00000268107.5 protein_coding AC003005.1 2 OTTHUMG00000183404.1 overlapping_locus +35254 chr19 HAVANA gene 57499915 57518404 8073.0 + 0 ENSG00000152439.12 protein_coding ZNF773 2 OTTHUMG00000183403.3 overlapping_locus +35255 chr19 HAVANA gene 57527325 57557542 9279.0 + 0 ENSG00000121406.8 protein_coding ZNF549 1 OTTHUMG00000183465.1 +35256 chr19 HAVANA gene 57535257 57559863 5087.0 - 0 ENSG00000251369.8 protein_coding ZNF550 1 OTTHUMG00000133709.5 +35257 chr19 HAVANA gene 57571566 57578927 2561.0 - 0 ENSG00000083817.8 protein_coding ZNF416 2 OTTHUMG00000183467.1 +35258 chr19 HAVANA gene 57578456 57593777 5257.0 + 0 ENSG00000171649.11 protein_coding ZIK1 1 OTTHUMG00000183468.2 +35259 chr19 HAVANA gene 57599885 57612722 5019.0 + 0 ENSG00000183647.10 protein_coding ZNF530 2 OTTHUMG00000183469.2 +35260 chr19 HAVANA gene 57614233 57624723 5138.0 + 0 ENSG00000213762.11 protein_coding ZNF134 2 OTTHUMG00000183471.3 +35261 chr19 HAVANA gene 57625032 57626950 462.0 + 0 ENSG00000268392.1 lincRNA AC003682.1 2 OTTHUMG00000183472.1 +35262 chr19 HAVANA gene 57630395 57642779 3300.0 + 0 ENSG00000121417.13 protein_coding ZNF211 2 OTTHUMG00000168012.1 +35263 chr19 HAVANA gene 57664280 57665039 760.0 + 0 ENSG00000269097.1 processed_pseudogene TPRG1LP1 1 OTTHUMG00000183473.1 pseudo_consens +35264 chr19 HAVANA gene 57668935 57679152 2249.0 + 0 ENSG00000180532.10 protein_coding ZSCAN4 2 OTTHUMG00000183474.1 +35265 chr19 HAVANA gene 57697367 57709194 5713.0 - 0 ENSG00000179909.15 protein_coding ZNF154 2 OTTHUMG00000140375.2 +35266 chr19 HAVANA gene 57681969 57717301 4709.0 + 0 ENSG00000204519.10 protein_coding ZNF551 1 OTTHUMG00000183470.3 overlapping_locus +35267 chr19 HAVANA gene 57719751 57727624 3532.0 - 0 ENSG00000083814.13 protein_coding ZNF671 2 OTTHUMG00000183476.1 +35268 chr19 HAVANA gene 57682045 57753575 833.0 + 0 ENSG00000269026.2 protein_coding AC003006.1 2 OTTHUMG00000183475.2 overlapping_locus +35269 chr19 HAVANA gene 57746796 57758159 5484.0 + 0 ENSG00000152443.12 protein_coding ZNF776 1 OTTHUMG00000156943.3 overlapping_locus +35270 chr19 HAVANA gene 57803841 57814913 2989.0 - 0 ENSG00000178935.5 protein_coding ZNF552 1 OTTHUMG00000183478.1 +35271 chr19 HAVANA gene 57769655 57819939 3261.0 + 0 ENSG00000083828.15 protein_coding ZNF586 1 OTTHUMG00000183477.3 overlapping_locus +35272 chr19 HAVANA gene 57826461 57826778 318.0 - 0 ENSG00000269304.1 processed_pseudogene FKBP1AP1 1 OTTHUMG00000183480.1 pseudo_consens +35273 chr19 HAVANA gene 57819741 57846238 4380.0 + 0 ENSG00000269343.6 protein_coding ZNF587B 2 OTTHUMG00000183479.4 overlapping_locus +35274 chr19 HAVANA gene 57819719 57858941 1159.0 + 0 ENSG00000268750.6 protein_coding AC010522.1 1 OTTHUMG00000183527.5 overlapping_locus +35275 chr19 HAVANA gene 57849857 57865112 7350.0 + 0 ENSG00000198466.11 protein_coding ZNF587 1 OTTHUMG00000154901.4 overlapping_locus +35276 chr19 HAVANA gene 57867038 57868172 679.0 - 0 ENSG00000269867.1 sense_intronic AC010326.3 2 OTTHUMG00000183520.1 overlapping_locus +35277 chr19 HAVANA gene 57867885 57868834 936.0 + 0 ENSG00000270804.1 transcribed_processed_pseudogene AC010326.4 1 OTTHUMG00000184914.1 pseudo_consens +35278 chr19 HAVANA gene 57848731 57889074 12600.0 - 0 ENSG00000204514.9 protein_coding ZNF814 1 OTTHUMG00000183519.1 overlapping_locus +35279 chr19 HAVANA gene 57876765 57916591 1020.0 - 0 ENSG00000269476.1 protein_coding AC010326.2 2 OTTHUMG00000183521.1 overlapping_locus +35280 chr19 HAVANA gene 57900296 57916610 4204.0 - 0 ENSG00000173480.10 protein_coding ZNF417 2 OTTHUMG00000183488.3 overlapping_locus +35281 chr19 HAVANA gene 57921884 57935393 4501.0 - 0 ENSG00000196724.12 protein_coding ZNF418 1 OTTHUMG00000183448.3 +35282 chr19 HAVANA gene 57940833 57947675 2176.0 - 0 ENSG00000152454.3 protein_coding ZNF256 2 OTTHUMG00000183449.2 +35283 chr19 HAVANA gene 57953158 57953759 602.0 - 0 ENSG00000243234.1 processed_pseudogene AC010326.1 1 OTTHUMG00000158333.1 pseudo_consens +35284 chr19 HAVANA gene 57958437 57974534 915.0 - 0 ENSG00000177025.3 protein_coding C19orf18 2 OTTHUMG00000183450.1 +35285 chr19 HAVANA gene 57977053 58003349 7635.0 - 0 ENSG00000166704.11 protein_coding ZNF606 2 OTTHUMG00000169804.2 +35286 chr19 HAVANA gene 58002061 58011232 8787.0 + 0 ENSG00000176593.7 processed_transcript AC008969.1 1 OTTHUMG00000169805.1 +35287 chr19 HAVANA gene 58012589 58025926 1052.0 - 0 ENSG00000235974.1 unitary_pseudogene VN2R19P 2 OTTHUMG00000152894.1 +35288 chr19 HAVANA gene 58044592 58046769 2178.0 + 0 ENSG00000268660.1 processed_pseudogene LETM1P2 1 OTTHUMG00000183382.1 pseudo_consens,overlapping_locus +35289 chr19 HAVANA gene 58049046 58049346 301.0 - 0 ENSG00000270837.1 processed_pseudogene HNRNPDLP4 1 OTTHUMG00000184915.1 pseudo_consens +35290 chr19 HAVANA gene 58034032 58054631 2389.0 + 0 ENSG00000152467.9 protein_coding ZSCAN1 2 OTTHUMG00000183381.1 overlapping_locus +35291 chr19 ENSEMBL gene 58069970 58070288 319.0 + 0 ENSG00000243642.3 misc_RNA RN7SL526P 3 +35292 chr19 HAVANA gene 58059239 58086310 6418.0 + 0 ENSG00000176293.19 protein_coding ZNF135 1 OTTHUMG00000160719.5 ncRNA_host +35293 chr19 HAVANA gene 58083838 58118427 8307.0 - 0 ENSG00000121413.12 protein_coding ZSCAN18 2 OTTHUMG00000183451.2 +35294 chr19 HAVANA gene 58136713 58137054 342.0 + 0 ENSG00000268293.1 processed_pseudogene AC008751.1 1 OTTHUMG00000183454.1 pseudo_consens +35295 chr19 HAVANA gene 58126252 58155110 4309.0 - 0 ENSG00000181894.14 protein_coding ZNF329 2 OTTHUMG00000183453.3 +35296 chr19 HAVANA gene 58166166 58167145 980.0 + 0 ENSG00000269236.1 processed_pseudogene AC008751.2 2 OTTHUMG00000183455.1 +35297 chr19 HAVANA gene 58183029 58213562 8333.0 + 0 ENSG00000171606.17 protein_coding ZNF274 2 OTTHUMG00000183456.5 +35298 chr19 HAVANA gene 58216180 58216561 382.0 + 0 ENSG00000213013.4 processed_pseudogene RPS15AP36 1 OTTHUMG00000158336.1 pseudo_consens +35299 chr19 HAVANA gene 58224506 58225469 964.0 + 0 ENSG00000268866.1 processed_pseudogene AC020915.4 2 OTTHUMG00000183457.1 +35300 chr19 HAVANA gene 58266635 58267685 550.0 + 0 ENSG00000268201.1 sense_intronic AC020915.2 2 OTTHUMG00000183461.1 overlapping_locus +35301 chr19 HAVANA gene 58228594 58277495 7130.0 + 0 ENSG00000198131.13 protein_coding ZNF544 1 OTTHUMG00000183458.4 overlapping_locus +35302 chr19 HAVANA gene 58257270 58278808 2708.0 - 0 ENSG00000268516.2 antisense AC020915.3 2 OTTHUMG00000183460.2 +35303 chr19 HAVANA gene 58278951 58302805 9128.0 + 0 ENSG00000278129.1 protein_coding ZNF8 2 OTTHUMG00000182073.2 overlapping_locus +35304 chr19 HAVANA gene 58228914 58315183 3948.0 + 0 ENSG00000283515.1 protein_coding AC020915.5 2 OTTHUMG00000183459.2 overlapping_locus +35305 chr19 HAVANA gene 58278966 58315197 4227.0 + 0 ENSG00000267216.1 protein_coding AC020915.1 2 OTTHUMG00000182074.1 overlapping_locus +35306 chr19 HAVANA gene 58305319 58315663 5023.0 + 0 ENSG00000142396.10 protein_coding ERVK3-1 2 OTTHUMG00000150367.8 overlapping_locus +35307 chr19 HAVANA gene 58319277 58320489 1213.0 + 0 ENSG00000269794.1 processed_pseudogene AC010642.1 2 OTTHUMG00000183462.1 +35308 chr19 HAVANA gene 58310449 58326933 2413.0 - 0 ENSG00000283103.1 antisense AC010642.2 2 OTTHUMG00000191591.2 +35309 chr19 ENSEMBL gene 58334688 58334751 64.0 + 0 ENSG00000277588.1 miRNA MIR6806 3 +35310 chr19 HAVANA gene 58327019 58342332 4629.0 + 0 ENSG00000182318.5 protein_coding ZSCAN22 2 OTTHUMG00000183463.1 ncRNA_host +35311 chr19 HAVANA gene 58350795 58351720 926.0 + 0 ENSG00000279611.1 TEC AC012313.10 2 OTTHUMG00000183509.1 overlapping_locus +35312 chr19 HAVANA gene 58345178 58353499 4006.0 - 0 ENSG00000121410.11 protein_coding A1BG 1 OTTHUMG00000183507.2 overlapping_locus +35313 chr19 HAVANA gene 58347751 58355183 2793.0 + 0 ENSG00000268895.5 antisense A1BG-AS1 2 OTTHUMG00000183508.1 overlapping_locus +35314 chr19 HAVANA gene 58357999 58359603 1154.0 + 0 ENSG00000268049.1 antisense AC012313.2 2 OTTHUMG00000183516.1 +35315 chr19 HAVANA gene 58346854 58362751 4151.0 - 0 ENSG00000268230.5 processed_transcript AC012313.3 2 OTTHUMG00000183515.1 overlapping_locus +35316 chr19 HAVANA gene 58354357 58362848 3897.0 - 0 ENSG00000174586.10 protein_coding ZNF497 2 OTTHUMG00000183510.4 overlapping_locus +35317 chr19 ENSEMBL gene 58363438 58363562 125.0 + 0 ENSG00000252211.1 rRNA_pseudogene RNA5SP473 3 +35318 chr19 HAVANA gene 58362585 58366591 790.0 + 0 ENSG00000269054.1 antisense AC012313.6 2 OTTHUMG00000183511.1 +35319 chr19 HAVANA gene 58367618 58381060 2076.0 - 0 ENSG00000152475.6 protein_coding ZNF837 2 OTTHUMG00000183517.1 +35320 chr19 ENSEMBL gene 58386770 58386858 89.0 - 0 ENSG00000266640.1 miRNA MIR4754 3 +35321 chr19 HAVANA gene 58386400 58394806 3617.0 + 0 ENSG00000083845.8 protein_coding RPS5 2 OTTHUMG00000183530.3 +35322 chr19 HAVANA gene 58396090 58397079 990.0 + 0 ENSG00000269855.2 protein_coding RNF225 2 OTTHUMG00000189258.2 +35323 chr19 HAVANA gene 58400221 58400679 459.0 + 0 ENSG00000268307.1 lincRNA LINC02560 2 OTTHUMG00000183532.1 +35324 chr19 HAVANA gene 58404238 58408484 3417.0 - 0 ENSG00000232098.3 lincRNA AC012313.1 2 OTTHUMG00000183534.1 +35325 chr19 HAVANA gene 58401504 58418327 3696.0 + 0 ENSG00000171574.17 protein_coding ZNF584 1 OTTHUMG00000183533.2 +35326 chr19 HAVANA gene 58418560 58419310 495.0 + 0 ENSG00000268543.1 TEC AC012313.4 2 OTTHUMG00000183535.1 +35327 chr19 HAVANA gene 58428632 58431148 2517.0 - 0 ENSG00000268912.1 lincRNA AC012313.5 2 OTTHUMG00000183536.1 +35328 chr19 HAVANA gene 58432814 58440222 3527.0 - 0 ENSG00000131849.11 protein_coding ZNF132 2 OTTHUMG00000183537.1 +35329 chr19 HAVANA gene 58440448 58445849 5402.0 + 0 ENSG00000269473.1 lincRNA AC012313.8 2 OTTHUMG00000183538.1 +35330 chr19 HAVANA gene 58451604 58457833 4042.0 + 0 ENSG00000249471.7 protein_coding ZNF324B 2 OTTHUMG00000183539.2 +35331 chr19 HAVANA gene 58467045 58475436 5664.0 + 0 ENSG00000083812.11 protein_coding ZNF324 2 OTTHUMG00000183540.2 overlapping_locus +35332 chr19 HAVANA gene 58475355 58475763 409.0 - 0 ENSG00000269106.1 antisense AC012313.7 2 OTTHUMG00000183542.1 +35333 chr19 HAVANA gene 58474017 58481230 4923.0 + 0 ENSG00000083838.15 protein_coding ZNF446 2 OTTHUMG00000183541.2 overlapping_locus +35334 chr19 ENSEMBL gene 58483749 58483843 95.0 - 0 ENSG00000252334.1 snRNA RNU6-1337P 3 +35335 chr19 ENSEMBL gene 58490797 58491075 279.0 + 0 ENSG00000265272.2 misc_RNA RN7SL693P 3 +35336 chr19 HAVANA gene 58500505 58501137 633.0 + 0 ENSG00000273901.1 antisense AC012313.9 2 OTTHUMG00000186789.2 +35337 chr19 HAVANA gene 58479512 58512413 8025.0 - 0 ENSG00000083807.9 protein_coding SLC27A5 1 OTTHUMG00000183543.1 ncRNA_host +35338 chr19 HAVANA gene 58513530 58538911 3418.0 - 0 ENSG00000119574.12 protein_coding ZBTB45 2 OTTHUMG00000183545.2 +35339 chr19 ENSEMBL gene 58543299 58543578 280.0 - 0 ENSG00000264910.2 misc_RNA RN7SL525P 3 +35340 chr19 ENSEMBL gene 58550285 58550376 92.0 + 0 ENSG00000275924.1 miRNA MIR6807 3 +35341 chr19 HAVANA gene 58544091 58550722 4034.0 + 0 ENSG00000130726.11 protein_coding TRIM28 1 OTTHUMG00000183546.2 ncRNA_host +35342 chr19 HAVANA gene 58551566 58555124 2129.0 - 0 ENSG00000130724.8 protein_coding CHMP2A 2 OTTHUMG00000183547.3 +35343 chr19 HAVANA gene 58555712 58558960 1831.0 - 0 ENSG00000130725.7 protein_coding UBE2M 2 OTTHUMG00000183548.2 +35344 chr19 HAVANA gene 58561931 58573575 6691.0 - 0 ENSG00000099326.8 protein_coding MZF1 2 OTTHUMG00000183550.2 +35345 chr19 HAVANA gene 58559129 58574797 2968.0 + 0 ENSG00000267858.5 antisense MZF1-AS1 2 OTTHUMG00000183549.1 overlapping_locus +35346 chr19 HAVANA gene 58581426 58581912 487.0 + 0 ENSG00000285138.1 transcribed_processed_pseudogene AC016629.3 2 OTTHUMG00000183523.2 overlapping_locus +35347 chr19 HAVANA gene 58586158 58586356 199.0 + 0 ENSG00000269032.1 transcribed_processed_pseudogene AC016629.1 2 OTTHUMG00000183524.1 overlapping_locus +35348 chr19 HAVANA gene 58593896 58599355 1120.0 - 0 ENSG00000269600.1 antisense AC016629.2 2 OTTHUMG00000183526.1 +35349 chr19 HAVANA gene 58573503 58599801 4969.0 + 0 ENSG00000213753.10 transcribed_processed_pseudogene CENPBD1P1 1 OTTHUMG00000158344.3 pseudo_consens,overlapping_locus +35350 chr2 HAVANA gene 38814 46870 3968.0 - 0 ENSG00000184731.5 protein_coding FAM110C 2 OTTHUMG00000151321.1 +35351 chr2 HAVANA gene 197569 202605 4775.0 + 0 ENSG00000227061.1 antisense AC079779.1 2 OTTHUMG00000151377.1 +35352 chr2 HAVANA gene 217730 266398 11165.0 - 0 ENSG00000035115.21 protein_coding SH3YL1 2 OTTHUMG00000151359.8 +35353 chr2 HAVANA gene 264140 278283 4160.0 + 0 ENSG00000143727.15 protein_coding ACP1 2 OTTHUMG00000086933.5 +35354 chr2 HAVANA gene 279558 288851 2191.0 - 0 ENSG00000189292.15 protein_coding ALKAL2 2 OTTHUMG00000151366.5 +35355 chr2 HAVANA gene 286419 301515 922.0 + 0 ENSG00000228643.1 processed_transcript AC079779.2 2 OTTHUMG00000151364.1 +35356 chr2 HAVANA gene 307683 309424 548.0 + 0 ENSG00000277997.1 lincRNA AC079779.4 2 OTTHUMG00000187987.1 +35357 chr2 HAVANA gene 305111 314367 3312.0 - 0 ENSG00000235779.7 lincRNA AC079779.3 2 OTTHUMG00000151363.5 +35358 chr2 HAVANA gene 317912 342118 1505.0 + 0 ENSG00000233684.2 lincRNA LINC01865 2 OTTHUMG00000151365.3 +35359 chr2 HAVANA gene 388412 416885 549.0 + 0 ENSG00000236856.1 lincRNA AC105393.2 2 OTTHUMG00000151367.1 +35360 chr2 HAVANA gene 421057 422303 674.0 + 0 ENSG00000226277.1 lincRNA AC105393.1 2 OTTHUMG00000151358.1 +35361 chr2 HAVANA gene 490944 492655 510.0 - 0 ENSG00000223985.1 lincRNA LINC01874 2 OTTHUMG00000151362.1 +35362 chr2 HAVANA gene 495731 496633 729.0 + 0 ENSG00000284452.1 lincRNA AC093326.2 2 OTTHUMG00000191986.1 +35363 chr2 HAVANA gene 545805 546667 660.0 + 0 ENSG00000225942.1 lincRNA LINC01875 2 OTTHUMG00000151361.1 +35364 chr2 HAVANA gene 558204 578145 762.0 + 0 ENSG00000233633.1 lincRNA AC093326.1 2 OTTHUMG00000151360.1 +35365 chr2 HAVANA gene 667335 677439 5044.0 - 0 ENSG00000151353.14 protein_coding TMEM18 1 OTTHUMG00000151381.1 +35366 chr2 HAVANA gene 687799 688348 550.0 + 0 ENSG00000280360.1 TEC AC092159.4 2 OTTHUMG00000192131.1 +35367 chr2 HAVANA gene 692083 693235 571.0 - 0 ENSG00000233970.1 antisense AC092159.3 2 OTTHUMG00000151375.1 +35368 chr2 HAVANA gene 677186 697371 2298.0 + 0 ENSG00000233296.1 antisense AC092159.2 2 OTTHUMG00000151378.1 +35369 chr2 HAVANA gene 724966 731224 706.0 - 0 ENSG00000227713.1 lincRNA AC092159.1 2 OTTHUMG00000151379.1 +35370 chr2 HAVANA gene 739588 740164 577.0 - 0 ENSG00000272342.1 lincRNA LINC01115 2 OTTHUMG00000185487.1 +35371 chr2 HAVANA gene 742488 747767 535.0 + 0 ENSG00000223751.1 lincRNA AC116609.1 1 OTTHUMG00000151380.1 overlapping_locus +35372 chr2 HAVANA gene 741977 749856 256.0 + 0 ENSG00000231173.1 lincRNA AC116609.2 1 OTTHUMG00000151376.1 overlapping_locus +35373 chr2 HAVANA gene 779840 868608 3201.0 - 0 ENSG00000237667.6 lincRNA LINC01115 2 OTTHUMG00000151368.4 +35374 chr2 HAVANA gene 900216 905451 759.0 - 0 ENSG00000228799.5 lincRNA LINC01939 2 OTTHUMG00000151369.1 +35375 chr2 HAVANA gene 910926 921124 589.0 - 0 ENSG00000234796.1 antisense AC113607.1 2 OTTHUMG00000151371.1 +35376 chr2 HAVANA gene 949627 950274 539.0 - 0 ENSG00000235688.2 antisense AC116614.1 2 OTTHUMG00000151389.2 +35377 chr2 HAVANA gene 1059133 1068341 432.0 - 0 ENSG00000235403.1 antisense AC114808.1 1 OTTHUMG00000151390.1 +35378 chr2 HAVANA gene 1158310 1160424 536.0 - 0 ENSG00000236665.1 antisense AC114808.2 1 OTTHUMG00000151387.1 +35379 chr2 HAVANA gene 1341044 1346568 850.0 - 0 ENSG00000233553.1 antisense AC108462.1 2 OTTHUMG00000151388.1 +35380 chr2 HAVANA gene 950868 1367613 4469.0 + 0 ENSG00000172554.11 protein_coding SNTG2 2 OTTHUMG00000151370.4 +35381 chr2 HAVANA gene 1374066 1543711 8453.0 + 0 ENSG00000115705.21 protein_coding TPO 2 OTTHUMG00000090271.10 +35382 chr2 HAVANA gene 1552445 1554701 762.0 + 0 ENSG00000283766.1 lincRNA AC141930.2 2 OTTHUMG00000191987.1 +35383 chr2 HAVANA gene 1366234 1580747 2569.0 - 0 ENSG00000231482.3 lincRNA AC105450.1 2 OTTHUMG00000151384.3 overlapping_locus +35384 chr2 HAVANA gene 1546665 1620113 786.0 - 0 ENSG00000228613.1 antisense AC141930.1 2 OTTHUMG00000151383.1 overlapping_locus +35385 chr2 HAVANA gene 1620510 1625419 1641.0 - 0 ENSG00000203635.2 lincRNA AC144450.1 2 OTTHUMG00000151382.1 +35386 chr2 HAVANA gene 1631887 1744852 11257.0 - 0 ENSG00000130508.10 protein_coding PXDN 2 OTTHUMG00000059697.4 +35387 chr2 HAVANA gene 1795525 1811526 1722.0 + 0 ENSG00000284600.1 antisense AC093390.2 2 OTTHUMG00000191988.1 +35388 chr2 HAVANA gene 1824412 1828667 3403.0 + 0 ENSG00000232057.1 antisense AC093390.1 2 OTTHUMG00000151406.1 +35389 chr2 HAVANA gene 2319232 2327110 3244.0 + 0 ENSG00000225619.1 antisense MYT1L-AS1 2 OTTHUMG00000151409.3 +35390 chr2 HAVANA gene 1789113 2331664 35151.0 - 0 ENSG00000186487.19 protein_coding MYT1L 1 OTTHUMG00000151407.13 +35391 chr2 HAVANA gene 2641989 2656630 547.0 - 0 ENSG00000234929.1 lincRNA AC018685.2 1 OTTHUMG00000151395.1 +35392 chr2 HAVANA gene 2729908 2730957 368.0 - 0 ENSG00000227364.1 lincRNA AC018685.1 1 OTTHUMG00000151394.1 +35393 chr2 HAVANA gene 2834264 2838391 574.0 - 0 ENSG00000237720.1 lincRNA AC011995.2 1 OTTHUMG00000151393.1 +35394 chr2 HAVANA gene 2870558 2871231 578.0 - 0 ENSG00000228391.1 lincRNA AC011995.1 2 OTTHUMG00000151428.1 +35395 chr2 HAVANA gene 2895048 3126026 2344.0 - 0 ENSG00000234423.1 lincRNA LINC01250 1 OTTHUMG00000151427.1 +35396 chr2 HAVANA gene 3131581 3145780 952.0 - 0 ENSG00000236760.1 lincRNA AC019118.2 1 OTTHUMG00000151429.1 +35397 chr2 HAVANA gene 3156756 3157797 435.0 + 0 ENSG00000226649.1 lincRNA AC019118.1 2 OTTHUMG00000151435.1 +35398 chr2 HAVANA gene 3298341 3301465 718.0 - 0 ENSG00000224885.1 sense_intronic EIPR1-IT1 2 OTTHUMG00000151430.1 overlapping_locus +35399 chr2 HAVANA gene 3188925 3377882 5775.0 - 0 ENSG00000032389.12 protein_coding EIPR1 1 OTTHUMG00000090329.4 overlapping_locus +35400 chr2 HAVANA gene 3481242 3482409 908.0 - 0 ENSG00000225234.1 antisense TRAPPC12-AS1 2 OTTHUMG00000151434.1 +35401 chr2 HAVANA gene 3379675 3485094 9193.0 + 0 ENSG00000171853.15 protein_coding TRAPPC12 1 OTTHUMG00000090328.4 +35402 chr2 HAVANA gene 3496956 3497428 473.0 + 0 ENSG00000271868.1 lincRNA AC114810.1 2 OTTHUMG00000185500.1 +35403 chr2 HAVANA gene 3497361 3519736 5560.0 - 0 ENSG00000182551.13 protein_coding ADI1 2 OTTHUMG00000112441.6 +35404 chr2 HAVANA gene 3519275 3523197 974.0 + 0 ENSG00000235078.1 antisense AC231981.1 1 OTTHUMG00000151471.2 +35405 chr2 HAVANA gene 3531813 3536873 1532.0 - 0 ENSG00000242282.6 lincRNA AC108488.1 2 OTTHUMG00000151418.2 overlapping_locus +35406 chr2 HAVANA gene 3531984 3547957 421.0 - 0 ENSG00000255767.1 protein_coding AC108488.2 2 OTTHUMG00000167878.1 overlapping_locus +35407 chr2 HAVANA gene 3544793 3558616 2865.0 - 0 ENSG00000171865.9 protein_coding RNASEH1 2 OTTHUMG00000090279.2 overlapping_locus +35408 chr2 HAVANA gene 3558492 3561745 1218.0 + 0 ENSG00000234171.2 antisense RNASEH1-AS1 2 OTTHUMG00000151419.2 +35409 chr2 HAVANA gene 3575205 3580920 5584.0 + 0 ENSG00000171863.14 protein_coding RPS7 2 OTTHUMG00000090305.7 +35410 chr2 HAVANA gene 3603397 3604242 693.0 - 0 ENSG00000237370.1 antisense AC010907.2 2 OTTHUMG00000151467.1 +35411 chr2 HAVANA gene 3617548 3617757 210.0 - 0 ENSG00000188765.7 unprocessed_pseudogene TMSB4XP2 2 OTTHUMG00000151484.1 +35412 chr2 HAVANA gene 3594832 3644644 2778.0 + 0 ENSG00000118004.17 protein_coding COLEC11 2 OTTHUMG00000090304.8 +35413 chr2 HAVANA gene 3688021 3688981 961.0 - 0 ENSG00000232718.1 processed_pseudogene GAPDHP48 1 OTTHUMG00000151489.1 pseudo_consens +35414 chr2 HAVANA gene 3658195 3702671 2542.0 + 0 ENSG00000151360.9 protein_coding ALLC 2 OTTHUMG00000151485.1 +35415 chr2 HAVANA gene 3702585 3704153 807.0 - 0 ENSG00000224661.1 antisense AC010907.1 2 OTTHUMG00000151488.1 +35416 chr2 HAVANA gene 3703592 3847411 2242.0 + 0 ENSG00000214866.8 protein_coding DCDC2C 1 OTTHUMG00000151490.4 +35417 chr2 HAVANA gene 3957655 3974070 3443.0 - 0 ENSG00000237401.6 lincRNA LINC01304 1 OTTHUMG00000151486.2 +35418 chr2 HAVANA gene 4136644 4140731 607.0 - 0 ENSG00000229550.1 lincRNA AC012445.1 2 OTTHUMG00000151487.1 +35419 chr2 HAVANA gene 4514204 4515056 853.0 - 0 ENSG00000231821.1 processed_pseudogene NPM1P48 1 OTTHUMG00000151582.1 pseudo_consens +35420 chr2 HAVANA gene 4628222 4656215 3099.0 - 0 ENSG00000231532.5 lincRNA LINC01249 1 OTTHUMG00000151581.1 +35421 chr2 ENSEMBL gene 4827001 4827084 84.0 - 0 ENSG00000252238.1 snoRNA RF00322 3 +35422 chr2 ENSEMBL gene 4945277 4945383 107.0 + 0 ENSG00000207192.1 snRNA RNU6-649P 3 +35423 chr2 HAVANA gene 5313740 5314134 395.0 - 0 ENSG00000228585.1 processed_pseudogene AC073143.1 1 OTTHUMG00000151417.1 pseudo_consens +35424 chr2 HAVANA gene 5549780 5556031 319.0 - 0 ENSG00000232835.1 lincRNA AC107057.1 2 OTTHUMG00000151420.1 +35425 chr2 HAVANA gene 5618327 5691118 1115.0 - 0 ENSG00000230090.5 processed_transcript AC108025.1 1 OTTHUMG00000151425.2 overlapping_locus +35426 chr2 HAVANA gene 5602505 5691488 468.0 - 0 ENSG00000224128.1 antisense LINC01248 2 OTTHUMG00000151424.1 overlapping_locus +35427 chr2 HAVANA gene 5692667 5701385 8719.0 + 0 ENSG00000176887.6 protein_coding SOX11 2 OTTHUMG00000090333.1 overlapping_locus,retrogene +35428 chr2 HAVANA gene 5696220 5708095 1199.0 + 0 ENSG00000242540.2 3prime_overlapping_ncRNA AC108025.2 2 OTTHUMG00000151423.2 overlapping_locus +35429 chr2 HAVANA gene 5726449 5730342 1746.0 + 0 ENSG00000236106.1 lincRNA AC010729.1 2 OTTHUMG00000151422.1 +35430 chr2 HAVANA gene 5810641 5812596 411.0 - 0 ENSG00000237266.1 lincRNA LINC01810 2 OTTHUMG00000151421.1 +35431 chr2 ENSEMBL gene 5974662 5974732 71.0 + 0 ENSG00000276733.1 miRNA MIR7158 3 +35432 chr2 HAVANA gene 5932687 6001275 8200.0 + 0 ENSG00000232044.6 processed_transcript LINC01105 2 OTTHUMG00000151462.2 ncRNA_host +35433 chr2 HAVANA gene 6258348 6341782 2052.0 - 0 ENSG00000234275.2 lincRNA AC017053.1 1 OTTHUMG00000151460.3 +35434 chr2 HAVANA gene 6366010 6375422 4209.0 - 0 ENSG00000227007.1 lincRNA LINC01247 2 OTTHUMG00000151457.1 +35435 chr2 HAVANA gene 6495877 6496798 922.0 - 0 ENSG00000231610.1 processed_pseudogene PIK3CDP1 1 OTTHUMG00000151459.1 pseudo_consens +35436 chr2 HAVANA gene 6496003 6503806 528.0 + 0 ENSG00000226488.1 lincRNA LINC01824 1 OTTHUMG00000151461.1 +35437 chr2 ENSEMBL gene 6650373 6650439 67.0 + 0 ENSG00000283394.1 miRNA MIR7515 3 +35438 chr2 HAVANA gene 6615389 6650535 7129.0 - 0 ENSG00000236172.6 lincRNA MIR7515HG 2 OTTHUMG00000151631.4 +35439 chr2 HAVANA gene 6728177 6770311 2202.0 - 0 ENSG00000205837.7 lincRNA LINC00487 2 OTTHUMG00000151630.2 +35440 chr2 HAVANA gene 6828514 6840464 973.0 - 0 ENSG00000225964.5 antisense NRIR 1 OTTHUMG00000151730.1 +35441 chr2 HAVANA gene 6840570 6866635 4302.0 - 0 ENSG00000134326.11 protein_coding CMPK2 2 OTTHUMG00000151629.2 +35442 chr2 HAVANA gene 6865806 6898239 4834.0 + 0 ENSG00000134321.11 protein_coding RSAD2 2 OTTHUMG00000090352.4 +35443 chr2 HAVANA gene 6905724 6906301 578.0 - 0 ENSG00000271947.1 lincRNA AC017076.1 2 OTTHUMG00000185542.1 +35444 chr2 HAVANA gene 6912277 6918709 4648.0 - 0 ENSG00000228203.6 processed_transcript RNF144A-AS1 2 OTTHUMG00000151701.3 +35445 chr2 HAVANA gene 6917392 7068286 6473.0 + 0 ENSG00000151692.14 protein_coding RNF144A 2 OTTHUMG00000090353.7 +35446 chr2 HAVANA gene 7062346 7077901 1586.0 - 0 ENSG00000223884.6 antisense AC068481.1 1 OTTHUMG00000151660.3 +35447 chr2 ENSEMBL gene 7141227 7141544 318.0 - 0 ENSG00000223145.1 misc_RNA RN7SKP112 3 +35448 chr2 HAVANA gene 7260871 7261504 634.0 + 0 ENSG00000272002.1 lincRNA AC010904.2 2 OTTHUMG00000185344.1 +35449 chr2 HAVANA gene 7324748 7325062 315.0 - 0 ENSG00000213774.3 processed_pseudogene AC010904.1 1 OTTHUMG00000151594.3 pseudo_consens +35450 chr2 HAVANA gene 7421261 7450254 3239.0 + 0 ENSG00000229727.6 processed_transcript AC013460.1 1 OTTHUMG00000151593.2 +35451 chr2 ENSEMBL gene 7576841 7576971 131.0 + 0 ENSG00000221255.1 snRNA RNU6ATAC37P 3 +35452 chr2 HAVANA gene 7671604 7672246 469.0 - 0 ENSG00000230515.1 lincRNA AC092580.2 2 OTTHUMG00000151592.1 +35453 chr2 HAVANA gene 7725801 7730705 243.0 + 0 ENSG00000235576.1 lincRNA LINC01871 1 OTTHUMG00000151591.1 +35454 chr2 HAVANA gene 7735645 7735783 139.0 - 0 ENSG00000232979.1 processed_pseudogene AC092580.3 2 OTTHUMG00000151597.1 +35455 chr2 HAVANA gene 7736438 7737095 658.0 - 0 ENSG00000229405.1 processed_pseudogene AC092580.1 1 OTTHUMG00000151588.1 pseudo_consens +35456 chr2 HAVANA gene 7886770 7899655 796.0 - 0 ENSG00000226506.5 lincRNA AC007463.1 2 OTTHUMG00000151589.1 +35457 chr2 HAVANA gene 8139402 8143269 447.0 + 0 ENSG00000229740.1 lincRNA U91324.1 2 OTTHUMG00000151596.1 +35458 chr2 HAVANA gene 7922425 8278084 2610.0 - 0 ENSG00000235665.5 lincRNA LINC00298 2 OTTHUMG00000151595.1 overlapping_locus +35459 chr2 HAVANA gene 8007771 8383621 4418.0 - 0 ENSG00000236790.5 lincRNA LINC00299 2 OTTHUMG00000112455.5 overlapping_locus +35460 chr2 HAVANA gene 8488420 8505027 3391.0 + 0 ENSG00000285591.1 lincRNA AC092617.1 2 OTTHUMG00000192834.2 +35461 chr2 HAVANA gene 8506446 8592903 12173.0 - 0 ENSG00000236008.2 lincRNA LINC01814 2 OTTHUMG00000151623.3 overlapping_locus +35462 chr2 HAVANA gene 8603082 8603359 278.0 + 0 ENSG00000225642.1 processed_pseudogene SNRPEP5 1 OTTHUMG00000151628.1 pseudo_consens +35463 chr2 HAVANA gene 8600892 8622942 565.0 - 0 ENSG00000231083.1 lincRNA AC011747.1 1 OTTHUMG00000151627.1 +35464 chr2 HAVANA gene 8666636 8681863 2060.0 - 0 ENSG00000235092.5 antisense ID2-AS1 1 OTTHUMG00000151625.1 +35465 chr2 HAVANA gene 8678845 8684453 2205.0 + 0 ENSG00000115738.9 protein_coding ID2 2 OTTHUMG00000112454.3 +35466 chr2 HAVANA gene 8721081 8837630 15362.0 - 0 ENSG00000134313.15 protein_coding KIDINS220 2 OTTHUMG00000151658.5 +35467 chr2 HAVANA gene 8852690 9003813 8798.0 - 0 ENSG00000143797.11 protein_coding MBOAT2 2 OTTHUMG00000090363.4 +35468 chr2 HAVANA gene 9018293 9018899 607.0 - 0 ENSG00000230886.3 processed_pseudogene HMGB1P25 1 OTTHUMG00000159110.1 pseudo_consens +35469 chr2 HAVANA gene 9081395 9081727 333.0 - 0 ENSG00000223640.1 processed_pseudogene RPL30P3 1 OTTHUMG00000157021.3 pseudo_consens +35470 chr2 HAVANA gene 9103440 9105114 817.0 + 0 ENSG00000242136.1 processed_transcript AC093904.2 1 OTTHUMG00000159113.1 +35471 chr2 HAVANA gene 9106593 9109865 3273.0 + 0 ENSG00000261104.1 lincRNA AC093904.4 2 OTTHUMG00000175721.1 +35472 chr2 HAVANA gene 9115197 9116884 368.0 + 0 ENSG00000244310.1 lincRNA AC093904.3 2 OTTHUMG00000159112.1 +35473 chr2 HAVANA gene 9143166 9146106 455.0 + 0 ENSG00000240980.1 lincRNA AC093904.1 1 OTTHUMG00000159111.1 +35474 chr2 HAVANA gene 9271292 9271628 337.0 - 0 ENSG00000213772.3 processed_pseudogene EIF1P7 1 OTTHUMG00000159105.1 pseudo_consens +35475 chr2 HAVANA gene 9206765 9405683 7257.0 + 0 ENSG00000151693.10 protein_coding ASAP2 2 OTTHUMG00000117485.3 +35476 chr2 HAVANA gene 9403475 9423547 6678.0 - 0 ENSG00000119185.12 protein_coding ITGB1BP1 1 OTTHUMG00000090414.8 +35477 chr2 HAVANA gene 9423568 9473101 3769.0 + 0 ENSG00000119203.13 protein_coding CPSF3 2 OTTHUMG00000090415.4 +35478 chr2 HAVANA gene 9473658 9496543 5908.0 + 0 ENSG00000134330.18 protein_coding IAH1 1 OTTHUMG00000159076.3 +35479 chr2 HAVANA gene 9505445 9512412 491.0 + 0 ENSG00000239300.5 antisense AC080162.1 2 OTTHUMG00000159106.1 +35480 chr2 HAVANA gene 9488486 9556732 10750.0 - 0 ENSG00000151694.13 protein_coding ADAM17 1 OTTHUMG00000090425.12 +35481 chr2 HAVANA gene 9555899 9556775 877.0 + 0 ENSG00000271855.1 lincRNA AC073195.1 2 OTTHUMG00000185545.1 +35482 chr2 ENSEMBL gene 9615267 9615373 107.0 + 0 ENSG00000207086.1 misc_RNA RF00019 3 +35483 chr2 HAVANA gene 9583972 9631014 2713.0 - 0 ENSG00000134308.13 protein_coding YWHAQ 1 OTTHUMG00000013848.6 +35484 chr2 HAVANA gene 9638772 9649439 832.0 + 0 ENSG00000240687.1 lincRNA AC082651.1 2 OTTHUMG00000159115.1 +35485 chr2 HAVANA gene 9674023 9708413 1852.0 + 0 ENSG00000244260.1 lincRNA AC082651.4 2 OTTHUMG00000159120.1 +35486 chr2 ENSEMBL gene 9740643 9740783 141.0 - 0 ENSG00000200034.1 snRNA RNU4-73P 3 +35487 chr2 HAVANA gene 9746704 9746869 166.0 + 0 ENSG00000240960.1 processed_pseudogene AC082651.2 2 OTTHUMG00000159121.1 +35488 chr2 HAVANA gene 9757496 9770341 1947.0 - 0 ENSG00000243491.1 lincRNA AC082651.3 2 OTTHUMG00000159119.1 +35489 chr2 HAVANA gene 9843354 9934416 4064.0 + 0 ENSG00000115750.16 protein_coding TAF1B 2 OTTHUMG00000151673.4 +35490 chr2 HAVANA gene 9936360 9939590 3231.0 + 0 ENSG00000269973.1 lincRNA AC010969.2 2 OTTHUMG00000183966.2 +35491 chr2 HAVANA gene 9951693 10002277 7952.0 + 0 ENSG00000134317.17 protein_coding GRHL1 2 OTTHUMG00000151704.6 +35492 chr2 HAVANA gene 10003158 10006030 2412.0 - 0 ENSG00000188525.3 antisense AC010969.1 2 OTTHUMG00000119005.2 +35493 chr2 HAVANA gene 10021578 10022825 1248.0 + 0 ENSG00000260476.1 lincRNA AC104794.3 2 OTTHUMG00000175723.1 +35494 chr2 HAVANA gene 10039092 10040663 1572.0 - 0 ENSG00000260077.1 lincRNA AC104794.2 2 OTTHUMG00000175729.1 +35495 chr2 HAVANA gene 10042849 10054836 4589.0 + 0 ENSG00000172059.10 protein_coding KLF11 1 OTTHUMG00000119004.5 +35496 chr2 HAVANA gene 10054421 10054866 446.0 - 0 ENSG00000271787.1 antisense AC104794.4 2 OTTHUMG00000185549.1 +35497 chr2 HAVANA gene 10056780 10080944 2847.0 - 0 ENSG00000205795.4 protein_coding CYS1 2 OTTHUMG00000151703.1 +35498 chr2 HAVANA gene 10083781 10086101 312.0 + 0 ENSG00000233502.1 lincRNA AC104794.1 2 OTTHUMG00000151705.2 +35499 chr2 ENSEMBL gene 10090205 10090319 115.0 - 0 ENSG00000212558.1 snoRNA RF00568 3 +35500 chr2 HAVANA gene 10120698 10131419 5323.0 + 0 ENSG00000171848.14 protein_coding RRM2 2 OTTHUMG00000185555.3 +35501 chr2 ENSEMBL gene 10155072 10155206 135.0 - 0 ENSG00000206647.1 snoRNA RF00410 3 +35502 chr2 ENSEMBL gene 10192614 10192671 58.0 - 0 ENSG00000265418.1 miRNA MIR4261 3 +35503 chr2 HAVANA gene 10122739 10199288 2629.0 + 0 ENSG00000284681.2 protein_coding AC007240.1 2 OTTHUMG00000090449.8 overlapping_locus +35504 chr2 HAVANA gene 10141382 10211725 1897.0 + 0 ENSG00000163009.9 lincRNA C2orf48 2 OTTHUMG00000119017.2 overlapping_locus +35505 chr2 ENSEMBL gene 10280628 10280891 264.0 + 0 ENSG00000264030.2 misc_RNA RN7SL66P 3 +35506 chr2 ENSEMBL gene 10296047 10296180 134.0 - 0 ENSG00000206898.1 snoRNA RF00432 3 +35507 chr2 HAVANA gene 10287800 10302485 1871.0 - 0 ENSG00000285872.1 bidirectional_promoter_lncRNA AC007240.2 2 OTTHUMG00000192932.2 ncRNA_host +35508 chr2 HAVANA gene 10302889 10427617 6237.0 + 0 ENSG00000115756.12 protein_coding HPCAL1 2 OTTHUMG00000090451.5 +35509 chr2 ENSEMBL gene 10446714 10446849 136.0 - 0 ENSG00000206633.1 snoRNA SNORA80B 3 +35510 chr2 HAVANA gene 10439968 10448504 2968.0 - 0 ENSG00000115758.12 protein_coding ODC1 2 OTTHUMG00000090450.4 ncRNA_host +35511 chr2 HAVANA gene 10448694 10451327 1753.0 + 0 ENSG00000257135.5 lincRNA AC007249.2 1 OTTHUMG00000170230.1 +35512 chr2 HAVANA gene 10452319 10455552 494.0 + 0 ENSG00000217258.2 lincRNA AC007249.1 2 OTTHUMG00000151706.2 +35513 chr2 HAVANA gene 10589166 10604830 565.0 + 0 ENSG00000234818.1 antisense AC007314.1 1 OTTHUMG00000153036.1 +35514 chr2 HAVANA gene 10570766 10689987 3824.0 - 0 ENSG00000115761.15 protein_coding NOL10 2 OTTHUMG00000119023.2 +35515 chr2 ENSEMBL gene 10691538 10691831 294.0 + 0 ENSG00000277446.1 misc_RNA RF00017 3 +35516 chr2 HAVANA gene 10690344 10692099 1756.0 + 0 ENSG00000243819.4 lincRNA RN7SL832P 2 OTTHUMG00000185349.1 ncRNA_host +35517 chr2 HAVANA gene 10717773 10720952 568.0 + 0 ENSG00000236162.1 lincRNA AC092687.2 2 OTTHUMG00000151707.1 +35518 chr2 ENSEMBL gene 10744186 10744249 64.0 + 0 ENSG00000239053.1 snRNA RNU7-138P 3 +35519 chr2 HAVANA gene 10767875 10770058 393.0 - 0 ENSG00000272275.1 lincRNA AC092687.3 2 OTTHUMG00000185558.1 +35520 chr2 HAVANA gene 10721100 10785110 3483.0 + 0 ENSG00000143882.11 protein_coding ATP6V1C2 2 OTTHUMG00000090459.5 ncRNA_host +35521 chr2 ENSEMBL gene 10815485 10815546 62.0 - 0 ENSG00000238962.1 snRNA RNU7-176P 3 +35522 chr2 HAVANA gene 10783391 10837977 4101.0 - 0 ENSG00000143870.12 protein_coding PDIA6 1 OTTHUMG00000090479.6 ncRNA_host +35523 chr2 HAVANA gene 10847577 10854955 389.0 + 0 ENSG00000232056.1 lincRNA AC092687.1 2 OTTHUMG00000151708.2 +35524 chr2 HAVANA gene 10874291 10874567 277.0 - 0 ENSG00000270488.1 processed_pseudogene AC079587.1 1 OTTHUMG00000184433.1 pseudo_consens +35525 chr2 HAVANA gene 10878269 10885118 461.0 + 0 ENSG00000271952.1 lincRNA LINC01954 2 OTTHUMG00000185559.1 +35526 chr2 HAVANA gene 10911937 10914225 2289.0 + 0 ENSG00000162975.4 protein_coding KCNF1 2 OTTHUMG00000119054.1 retrogene +35527 chr2 HAVANA gene 11102142 11102997 856.0 + 0 ENSG00000226080.1 processed_pseudogene AC062028.1 1 OTTHUMG00000157022.1 pseudo_consens +35528 chr2 HAVANA gene 11105317 11132821 2705.0 - 0 ENSG00000145063.14 lincRNA FLJ33534 2 OTTHUMG00000119056.4 +35529 chr2 HAVANA gene 11133053 11146790 2938.0 + 0 ENSG00000150873.11 protein_coding C2orf50 2 OTTHUMG00000119057.2 +35530 chr2 HAVANA gene 11155198 11178874 2275.0 + 0 ENSG00000162976.12 protein_coding PQLC3 1 OTTHUMG00000119055.5 +35531 chr2 ENSEMBL gene 11233988 11234094 107.0 + 0 ENSG00000207267.1 snRNA RNU6-1081P 3 +35532 chr2 HAVANA gene 11308025 11308941 917.0 + 0 ENSG00000230154.1 processed_pseudogene AC018463.1 1 OTTHUMG00000151820.3 pseudo_consens +35533 chr2 HAVANA gene 11179761 11348330 10145.0 - 0 ENSG00000134318.13 protein_coding ROCK2 1 OTTHUMG00000149916.7 +35534 chr2 HAVANA gene 11351627 11352118 492.0 + 0 ENSG00000226961.3 processed_pseudogene PPIAP60 1 OTTHUMG00000151817.3 pseudo_consens +35535 chr2 HAVANA gene 11357515 11365636 1061.0 - 0 ENSG00000230952.1 lincRNA AC099344.1 1 OTTHUMG00000151821.1 +35536 chr2 HAVANA gene 11388023 11390367 626.0 - 0 ENSG00000231403.1 lincRNA AC099344.2 2 OTTHUMG00000151819.1 +35537 chr2 HAVANA gene 11393981 11403077 1650.0 + 0 ENSG00000224177.6 lincRNA LINC00570 2 OTTHUMG00000151818.2 +35538 chr2 HAVANA gene 11407297 11423809 1832.0 + 0 ENSG00000285569.1 lincRNA AC099344.3 2 OTTHUMG00000192869.2 +35539 chr2 HAVANA gene 11444375 11466177 4067.0 - 0 ENSG00000169016.16 protein_coding E2F6 2 OTTHUMG00000090565.5 +35540 chr2 ENSEMBL gene 11517397 11517503 107.0 + 0 ENSG00000201610.1 rRNA_pseudogene RNA5SP84 3 +35541 chr2 ENSEMBL gene 11540605 11540677 73.0 - 0 ENSG00000264010.1 miRNA MIR4429 3 +35542 chr2 ENSEMBL gene 11561194 11561306 113.0 + 0 ENSG00000251718.1 snRNA RNU2-13P 3 +35543 chr2 ENSEMBL gene 11561661 11561779 119.0 - 0 ENSG00000285626.1 rRNA_pseudogene AC011994.1 3 +35544 chr2 ENSEMBL gene 11561661 11561779 119.0 - 0 ENSG00000202248.1 rRNA RNA5SP85 3 +35545 chr2 ENSEMBL gene 11584773 11585047 275.0 + 0 ENSG00000239899.3 misc_RNA RN7SL674P 3 +35546 chr2 HAVANA gene 11482341 11642788 12361.0 + 0 ENSG00000196208.13 protein_coding GREB1 2 OTTHUMG00000141276.7 ncRNA_host +35547 chr2 HAVANA gene 11665369 11665969 601.0 - 0 ENSG00000230044.1 processed_pseudogene AC110754.1 1 OTTHUMG00000133577.1 pseudo_consens,overlapping_locus +35548 chr2 HAVANA gene 11658178 11670164 1569.0 - 0 ENSG00000169006.6 protein_coding NTSR2 2 OTTHUMG00000119083.2 overlapping_locus +35549 chr2 HAVANA gene 11673964 11676925 596.0 - 0 ENSG00000276411.1 lincRNA AC106875.2 2 OTTHUMG00000187768.1 +35550 chr2 HAVANA gene 11681460 11683328 1171.0 + 0 ENSG00000228496.1 sense_intronic AC106875.1 2 OTTHUMG00000151822.1 +35551 chr2 HAVANA gene 11721619 11724222 1605.0 - 0 ENSG00000203643.3 antisense AC012456.1 1 OTTHUMG00000140389.2 +35552 chr2 HAVANA gene 11740997 11745301 561.0 - 0 ENSG00000230790.2 antisense AC012456.2 1 OTTHUMG00000151836.2 +35553 chr2 ENSEMBL gene 11767444 11767525 82.0 + 0 ENSG00000265056.1 miRNA MIR548S 3 +35554 chr2 HAVANA gene 11677595 11827409 11861.0 + 0 ENSG00000134324.11 protein_coding LPIN1 1 OTTHUMG00000119082.12 ncRNA_host +35555 chr2 ENSEMBL gene 11836933 11836986 54.0 - 0 ENSG00000265172.1 miRNA MIR4262 3 +35556 chr2 ENSEMBL gene 12030303 12030372 70.0 - 0 ENSG00000238503.1 snoRNA RF00093 3 +35557 chr2 ENSEMBL gene 12199130 12199201 72.0 + 0 ENSG00000264089.1 miRNA MIR3681 3 +35558 chr2 ENSEMBL gene 12411398 12411501 104.0 - 0 ENSG00000207183.1 snRNA RNU6-843P 3 +35559 chr2 HAVANA gene 11848622 12578348 3876.0 + 0 ENSG00000224184.5 lincRNA MIR3681HG 2 OTTHUMG00000151709.2 ncRNA_host +35560 chr2 HAVANA gene 12598987 12605145 399.0 + 0 ENSG00000223360.1 lincRNA AC096559.1 2 OTTHUMG00000151710.1 +35561 chr2 HAVANA gene 12715415 12716227 813.0 + 0 ENSG00000261117.1 lincRNA AC009486.1 2 OTTHUMG00000175731.1 +35562 chr2 ENSEMBL gene 12737367 12737444 78.0 + 0 ENSG00000264370.1 miRNA MIR3125 3 +35563 chr2 HAVANA gene 12716889 12742734 4588.0 + 0 ENSG00000071575.11 protein_coding TRIB2 1 OTTHUMG00000090575.4 ncRNA_host +35564 chr2 HAVANA gene 12966784 13007013 2846.0 - 0 ENSG00000225649.5 processed_transcript AC064875.1 2 OTTHUMG00000151711.1 +35565 chr2 HAVANA gene 13000953 13331683 2240.0 + 0 ENSG00000285876.1 lincRNA AC093912.1 2 OTTHUMG00000192881.2 +35566 chr2 HAVANA gene 13537673 13609168 455.0 + 0 ENSG00000229370.1 lincRNA AC073062.1 2 OTTHUMG00000151714.1 +35567 chr2 HAVANA gene 13723048 13758152 832.0 + 0 ENSG00000227718.1 lincRNA AC016730.1 2 OTTHUMG00000151713.1 +35568 chr2 ENSEMBL gene 14274622 14274725 104.0 - 0 ENSG00000251859.1 snRNA RNU6-1288P 3 +35569 chr2 HAVANA gene 13710531 14400963 3848.0 - 0 ENSG00000230448.5 lincRNA LINC00276 2 OTTHUMG00000151716.2 ncRNA_host +35570 chr2 ENSEMBL gene 14530941 14531223 283.0 + 0 ENSG00000237261.2 misc_RNA RF00017 3 +35571 chr2 HAVANA gene 14616428 14630192 346.0 + 0 ENSG00000228505.5 lincRNA AC011897.1 2 OTTHUMG00000151715.1 +35572 chr2 HAVANA gene 14632686 14650814 8384.0 + 0 ENSG00000162981.13 protein_coding FAM84A 2 OTTHUMG00000119093.3 +35573 chr2 HAVANA gene 14886647 14907664 467.0 - 0 ENSG00000235127.1 lincRNA AC068286.1 2 OTTHUMG00000151726.1 +35574 chr2 HAVANA gene 15397435 15397782 348.0 - 0 ENSG00000229087.1 processed_pseudogene AC007738.1 1 OTTHUMG00000157025.1 pseudo_consens,overlapping_locus +35575 chr2 HAVANA gene 15166909 15561330 8948.0 - 0 ENSG00000151779.12 protein_coding NBAS 1 OTTHUMG00000121153.2 overlapping_locus +35576 chr2 HAVANA gene 15564170 15573868 409.0 + 0 ENSG00000234022.1 antisense AC008278.2 2 OTTHUMG00000151725.1 +35577 chr2 HAVANA gene 15591178 15631111 3833.0 + 0 ENSG00000079785.14 protein_coding DDX1 2 OTTHUMG00000090593.4 +35578 chr2 HAVANA gene 15668684 15680484 568.0 - 0 ENSG00000224194.1 antisense AC008278.1 2 OTTHUMG00000151727.1 +35579 chr2 HAVANA gene 15690782 15744339 2223.0 + 0 ENSG00000231031.6 lincRNA LINC01804 2 OTTHUMG00000151724.1 +35580 chr2 HAVANA gene 15801747 15810877 487.0 - 0 ENSG00000237326.1 lincRNA AC113608.2 2 OTTHUMG00000151723.1 +35581 chr2 ENSEMBL gene 15864935 15865051 117.0 + 0 ENSG00000202160.1 snRNA RNU5E-7P 3 +35582 chr2 HAVANA gene 15869939 15870243 305.0 + 0 ENSG00000214657.4 processed_pseudogene AC113608.1 1 OTTHUMG00000157044.1 pseudo_consens +35583 chr2 ENSEMBL gene 15903669 15903772 104.0 + 0 ENSG00000238371.1 snoRNA RF01210 3 +35584 chr2 HAVANA gene 15920399 15936017 1039.0 + 0 ENSG00000223850.1 lincRNA MYCNUT 2 OTTHUMG00000039578.3 +35585 chr2 HAVANA gene 15921037 15942249 2413.0 - 0 ENSG00000233718.7 antisense MYCNOS 2 OTTHUMG00000151741.3 +35586 chr2 HAVANA gene 15940564 15947007 2602.0 + 0 ENSG00000134323.11 protein_coding MYCN 2 OTTHUMG00000039579.3 +35587 chr2 ENSEMBL gene 15950689 15950981 293.0 - 0 ENSG00000243541.3 misc_RNA RN7SL104P 3 +35588 chr2 HAVANA gene 15997049 16062885 516.0 - 0 ENSG00000226764.2 lincRNA AC010145.1 2 OTTHUMG00000151751.2 +35589 chr2 HAVANA gene 16050427 16085801 1330.0 + 0 ENSG00000236289.2 lincRNA GACAT3 2 OTTHUMG00000151744.2 +35590 chr2 HAVANA gene 16085222 16105841 1262.0 - 0 ENSG00000236989.5 lincRNA AC130710.1 2 OTTHUMG00000151742.1 +35591 chr2 HAVANA gene 16149251 16149394 144.0 + 0 ENSG00000271315.1 processed_pseudogene AC174048.1 1 OTTHUMG00000184340.1 pseudo_consens +35592 chr2 ENSEMBL gene 16199203 16199295 93.0 + 0 ENSG00000251704.1 snoRNA RF00561 3 +35593 chr2 HAVANA gene 16202430 16204226 637.0 + 0 ENSG00000226041.1 lincRNA AC010745.1 2 OTTHUMG00000151746.1 +35594 chr2 HAVANA gene 16227027 16228194 415.0 - 0 ENSG00000231266.1 lincRNA AC010745.3 1 OTTHUMG00000151749.1 +35595 chr2 HAVANA gene 16294445 16302290 720.0 - 0 ENSG00000285354.1 lincRNA AC010745.5 2 OTTHUMG00000192510.1 +35596 chr2 HAVANA gene 16316324 16319566 740.0 - 0 ENSG00000232444.1 lincRNA AC010745.4 1 OTTHUMG00000151743.1 +35597 chr2 HAVANA gene 16224047 16333978 4012.0 + 0 ENSG00000228876.3 lincRNA AC010745.2 2 OTTHUMG00000151750.4 +35598 chr2 HAVANA gene 16354256 16432702 477.0 + 0 ENSG00000224400.5 lincRNA AC010880.1 1 OTTHUMG00000151752.1 +35599 chr2 HAVANA gene 16541690 16545695 4006.0 - 0 ENSG00000279663.2 TEC AC104623.2 2 OTTHUMG00000191354.1 +35600 chr2 HAVANA gene 16523176 16555563 1457.0 + 0 ENSG00000237633.3 antisense AC104623.1 1 OTTHUMG00000151748.2 +35601 chr2 HAVANA gene 16549459 16666331 5448.0 - 0 ENSG00000197872.11 protein_coding FAM49A 2 OTTHUMG00000090615.3 +35602 chr2 HAVANA gene 16728124 16767555 710.0 + 0 ENSG00000223536.5 lincRNA AC008164.1 1 OTTHUMG00000151740.1 +35603 chr2 HAVANA gene 16853820 16855284 950.0 - 0 ENSG00000224604.1 processed_pseudogene AC008069.1 1 OTTHUMG00000151747.1 pseudo_consens +35604 chr2 HAVANA gene 16970034 16974497 201.0 + 0 ENSG00000237670.1 lincRNA LINC01866 2 OTTHUMG00000151745.1 +35605 chr2 ENSEMBL gene 17122841 17123140 300.0 - 0 ENSG00000222842.1 misc_RNA RN7SKP168 3 +35606 chr2 HAVANA gene 17284292 17284895 604.0 + 0 ENSG00000214843.3 processed_pseudogene ZFYVE9P2 1 OTTHUMG00000151762.1 pseudo_consens +35607 chr2 HAVANA gene 17385091 17386417 1327.0 + 0 ENSG00000236348.1 processed_pseudogene PSMC1P10 1 OTTHUMG00000151763.1 pseudo_consens +35608 chr2 HAVANA gene 17510584 17518439 3724.0 - 0 ENSG00000214842.5 protein_coding RAD51AP2 2 OTTHUMG00000151761.3 +35609 chr2 HAVANA gene 17539126 17657018 3833.0 + 0 ENSG00000163032.11 protein_coding VSNL1 2 OTTHUMG00000090645.5 +35610 chr2 HAVANA gene 17753858 17788941 11827.0 + 0 ENSG00000178295.14 protein_coding GEN1 2 OTTHUMG00000121173.4 +35611 chr2 HAVANA gene 17663812 17800242 9824.0 - 0 ENSG00000163029.15 protein_coding SMC6 2 OTTHUMG00000090675.6 +35612 chr2 HAVANA gene 17816496 17817101 606.0 + 0 ENSG00000151379.3 protein_coding MSGN1 2 OTTHUMG00000159089.1 +35613 chr2 ENSEMBL gene 18040606 18040733 128.0 - 0 ENSG00000212455.1 snoRNA RF00561 3 +35614 chr2 HAVANA gene 17877847 18361616 3131.0 + 0 ENSG00000170745.11 protein_coding KCNS3 2 OTTHUMG00000044150.6 retrogene +35615 chr2 HAVANA gene 18547386 18548204 819.0 - 0 ENSG00000260331.1 lincRNA AC079148.1 2 OTTHUMG00000175734.1 +35616 chr2 HAVANA gene 18554723 18560680 1587.0 - 0 ENSG00000240857.1 protein_coding RDH14 2 OTTHUMG00000090705.2 overlapping_locus +35617 chr2 ENSEMBL gene 18583367 18583468 102.0 - 0 ENSG00000207170.1 snRNA RNU6-1215P 3 +35618 chr2 HAVANA gene 18555545 18589564 2150.0 - 0 ENSG00000250741.6 protein_coding NT5C1B-RDH14 1 OTTHUMG00000161546.3 ncRNA_host,overlapping_locus +35619 chr2 HAVANA gene 18562872 18589572 3987.0 - 0 ENSG00000185013.16 protein_coding NT5C1B 2 OTTHUMG00000151765.5 ncRNA_host,overlapping_locus +35620 chr2 HAVANA gene 18784807 18787752 368.0 + 0 ENSG00000224626.1 lincRNA AC106053.1 2 OTTHUMG00000151764.1 +35621 chr2 HAVANA gene 18986451 19348067 3043.0 - 0 ENSG00000236204.6 lincRNA LINC01376 2 OTTHUMG00000151766.4 +35622 chr2 ENSEMBL gene 19348429 19348505 77.0 + 0 ENSG00000266738.1 miRNA MIR4757 3 +35623 chr2 HAVANA gene 19351485 19358653 5309.0 - 0 ENSG00000143867.6 protein_coding OSR1 2 OTTHUMG00000088793.2 +35624 chr2 HAVANA gene 19458220 19468961 1709.0 - 0 ENSG00000234597.1 lincRNA AC010096.1 2 OTTHUMG00000151772.1 +35625 chr2 HAVANA gene 19468997 19520095 2614.0 + 0 ENSG00000237992.2 lincRNA LINC01808 1 OTTHUMG00000151774.2 +35626 chr2 HAVANA gene 19711715 19717576 443.0 + 0 ENSG00000235911.1 lincRNA AC019055.1 1 OTTHUMG00000151775.1 +35627 chr2 HAVANA gene 19826249 19826575 327.0 + 0 ENSG00000213403.2 processed_pseudogene CISD1P1 1 OTTHUMG00000151771.1 pseudo_consens +35628 chr2 HAVANA gene 19868860 19885047 4683.0 + 0 ENSG00000228784.8 lincRNA LINC00954 2 OTTHUMG00000151773.3 +35629 chr2 HAVANA gene 19896643 19901986 1986.0 - 0 ENSG00000183891.5 protein_coding TTC32 1 OTTHUMG00000151776.2 +35630 chr2 HAVANA gene 19902025 19902569 545.0 + 0 ENSG00000271991.1 bidirectional_promoter_lncRNA AC013400.1 2 OTTHUMG00000185562.2 +35631 chr2 HAVANA gene 19910260 19990131 7836.0 - 0 ENSG00000118965.14 protein_coding WDR35 2 OTTHUMG00000090737.3 +35632 chr2 HAVANA gene 19990217 20004210 541.0 + 0 ENSG00000227210.1 antisense AC079145.1 1 OTTHUMG00000151790.1 +35633 chr2 HAVANA gene 19992111 20012694 3118.0 - 0 ENSG00000132031.12 protein_coding MATN3 2 OTTHUMG00000151788.1 +35634 chr2 HAVANA gene 20032650 20052028 1946.0 - 0 ENSG00000068697.6 protein_coding LAPTM4A 2 OTTHUMG00000090750.2 +35635 chr2 HAVANA gene 20052134 20054496 573.0 + 0 ENSG00000223734.2 lincRNA AC098828.2 1 OTTHUMG00000168757.1 +35636 chr2 HAVANA gene 20063856 20106829 746.0 - 0 ENSG00000234378.1 lincRNA AC098828.3 2 OTTHUMG00000151787.1 +35637 chr2 HAVANA gene 20155618 20156057 440.0 - 0 ENSG00000213729.3 processed_pseudogene AC098828.1 1 OTTHUMG00000151786.2 pseudo_consens +35638 chr2 ENSEMBL gene 20175346 20175639 294.0 + 0 ENSG00000266059.2 misc_RNA RN7SL140P 3 +35639 chr2 ENSEMBL gene 20175805 20175909 105.0 + 0 ENSG00000200763.1 snRNA RNU6-961P 3 +35640 chr2 HAVANA gene 20200797 20225433 3595.0 - 0 ENSG00000115884.10 protein_coding SDC1 2 OTTHUMG00000090751.4 +35641 chr2 HAVANA gene 20239892 20241046 1155.0 - 0 ENSG00000235411.1 processed_pseudogene AC007041.1 1 OTTHUMG00000151785.1 pseudo_consens +35642 chr2 ENSEMBL gene 20246326 20246387 62.0 - 0 ENSG00000238735.1 snRNA RNU7-113P 3 +35643 chr2 HAVANA gene 20248691 20352234 6978.0 - 0 ENSG00000055917.15 protein_coding PUM2 2 OTTHUMG00000122098.4 +35644 chr2 HAVANA gene 20386386 20396588 1363.0 + 0 ENSG00000232800.1 unitary_pseudogene SLC7A15P 1 OTTHUMG00000154621.1 pseudo_consens +35645 chr2 ENSEMBL gene 20401627 20401724 98.0 - 0 ENSG00000212171.1 rRNA_pseudogene RNA5SP86 3 +35646 chr2 HAVANA gene 20447074 20449445 2372.0 + 0 ENSG00000143878.9 protein_coding RHOB 2 OTTHUMG00000090755.3 +35647 chr2 HAVANA gene 20451042 20452947 308.0 + 0 ENSG00000228950.1 lincRNA AC023137.1 1 OTTHUMG00000151780.1 +35648 chr2 ENSEMBL gene 20480844 20480955 112.0 + 0 ENSG00000200829.1 misc_RNA RF00019 3 +35649 chr2 HAVANA gene 20499571 20501311 686.0 - 0 ENSG00000227047.1 lincRNA AC012065.1 1 OTTHUMG00000151781.1 +35650 chr2 HAVANA gene 20529467 20529976 510.0 - 0 ENSG00000279307.2 processed_pseudogene AC012065.5 2 OTTHUMG00000191506.1 +35651 chr2 HAVANA gene 20586248 20586686 439.0 - 0 ENSG00000269976.1 lincRNA AC012065.3 2 OTTHUMG00000183968.1 overlapping_locus +35652 chr2 HAVANA gene 20590775 20592548 600.0 - 0 ENSG00000231948.2 sense_intronic HS1BP3-IT1 2 OTTHUMG00000151789.2 overlapping_locus +35653 chr2 HAVANA gene 20606280 20606654 375.0 - 0 ENSG00000233416.1 processed_pseudogene AC012065.2 1 OTTHUMG00000151784.1 pseudo_consens,overlapping_locus +35654 chr2 HAVANA gene 20560448 20651089 9059.0 - 0 ENSG00000118960.12 protein_coding HS1BP3 1 OTTHUMG00000122099.3 overlapping_locus +35655 chr2 HAVANA gene 20678254 20678932 679.0 - 0 ENSG00000270100.1 lincRNA AC012065.4 2 OTTHUMG00000183969.1 +35656 chr2 HAVANA gene 20666664 20679245 9749.0 + 0 ENSG00000143869.6 protein_coding GDF7 2 OTTHUMG00000090781.3 +35657 chr2 HAVANA gene 20684014 20823130 4433.0 - 0 ENSG00000118961.14 protein_coding LDAH 1 OTTHUMG00000122097.6 +35658 chr2 HAVANA gene 20859771 20861661 1498.0 + 0 ENSG00000236436.1 lincRNA AC012361.1 2 OTTHUMG00000151783.1 +35659 chr2 HAVANA gene 20999313 21000917 1605.0 - 0 ENSG00000261012.2 lincRNA AC115619.1 2 OTTHUMG00000175749.2 +35660 chr2 HAVANA gene 21023496 21024170 675.0 + 0 ENSG00000280390.1 TEC AC010872.1 2 OTTHUMG00000151794.2 +35661 chr2 HAVANA gene 21001429 21044073 14828.0 - 0 ENSG00000084674.14 protein_coding APOB 2 OTTHUMG00000090785.3 +35662 chr2 HAVANA gene 21123917 21143272 6135.0 + 0 ENSG00000218819.4 protein_coding TDRD15 1 OTTHUMG00000151795.3 +35663 chr2 HAVANA gene 21198518 21198896 379.0 - 0 ENSG00000271629.1 processed_pseudogene AC067959.1 1 OTTHUMG00000184434.1 pseudo_consens +35664 chr2 HAVANA gene 21362292 21364025 363.0 - 0 ENSG00000270654.1 processed_pseudogene NUTF2P8 1 OTTHUMG00000184437.1 pseudo_consens +35665 chr2 HAVANA gene 21317660 21561313 1076.0 + 0 ENSG00000231204.6 lincRNA AC011752.1 1 OTTHUMG00000151793.3 overlapping_locus +35666 chr2 HAVANA gene 21607465 21637197 1873.0 - 0 ENSG00000235537.2 lincRNA AC009411.2 2 OTTHUMG00000151806.2 +35667 chr2 HAVANA gene 21638184 21649563 795.0 - 0 ENSG00000228538.6 lincRNA AC009411.1 1 OTTHUMG00000151809.2 +35668 chr2 HAVANA gene 21687434 21710623 2098.0 - 0 ENSG00000229621.1 lincRNA LINC01822 2 OTTHUMG00000151807.1 +35669 chr2 ENSEMBL gene 21922993 21923288 296.0 + 0 ENSG00000264192.1 misc_RNA RN7SL117P 3 +35670 chr2 HAVANA gene 21221175 21970959 882.0 + 0 ENSG00000233005.1 lincRNA AC018742.1 2 OTTHUMG00000151796.2 ncRNA_host,overlapping_locus +35671 chr2 HAVANA gene 22188336 22190313 1978.0 + 0 ENSG00000223691.1 processed_pseudogene AC068044.1 1 OTTHUMG00000151812.1 pseudo_consens +35672 chr2 HAVANA gene 22317053 22317244 192.0 + 0 ENSG00000234189.1 processed_pseudogene AC099799.1 2 OTTHUMG00000151814.1 +35673 chr2 ENSEMBL gene 22338886 22339003 118.0 - 0 ENSG00000206882.1 rRNA_pseudogene RNA5SP87 3 +35674 chr2 HAVANA gene 22377594 22482004 569.0 + 0 ENSG00000234207.1 lincRNA AC096570.2 2 OTTHUMG00000151815.1 +35675 chr2 HAVANA gene 21933268 22531105 4118.0 - 0 ENSG00000228999.3 lincRNA AC096570.1 2 OTTHUMG00000151808.3 overlapping_locus +35676 chr2 HAVANA gene 22536479 22538288 440.0 + 0 ENSG00000233587.1 lincRNA LINC01884 1 OTTHUMG00000151816.1 +35677 chr2 ENSEMBL gene 22861552 22861884 333.0 + 0 ENSG00000222616.1 misc_RNA RN7SKP27 3 +35678 chr2 HAVANA gene 23018125 23199056 1536.0 - 0 ENSG00000232451.1 lincRNA AC018467.1 1 OTTHUMG00000151813.2 +35679 chr2 HAVANA gene 23330664 23332044 525.0 - 0 ENSG00000223530.1 lincRNA AC012506.1 2 OTTHUMG00000151898.1 +35680 chr2 HAVANA gene 23347654 23351864 892.0 + 0 ENSG00000233714.1 lincRNA AC012506.3 2 OTTHUMG00000151900.1 +35681 chr2 HAVANA gene 23357516 23360376 533.0 - 0 ENSG00000223634.1 lincRNA AC012506.2 1 OTTHUMG00000151905.1 +35682 chr2 HAVANA gene 23375229 23381299 751.0 - 0 ENSG00000235497.5 lincRNA AC012506.4 2 OTTHUMG00000151891.1 +35683 chr2 HAVANA gene 23507043 23524344 584.0 - 0 ENSG00000224361.1 antisense AC011239.1 1 OTTHUMG00000151895.1 +35684 chr2 HAVANA gene 23616499 23617987 1489.0 - 0 ENSG00000279526.1 TEC AC011239.2 2 OTTHUMG00000151890.1 +35685 chr2 HAVANA gene 23667208 23685453 2706.0 - 0 ENSG00000283031.1 lincRNA AC009242.1 2 OTTHUMG00000191610.1 +35686 chr2 HAVANA gene 23385217 23708611 11071.0 + 0 ENSG00000119771.14 protein_coding KLHL29 2 OTTHUMG00000151899.3 +35687 chr2 HAVANA gene 23872268 23873014 747.0 - 0 ENSG00000224464.2 processed_pseudogene PGAM1P6 1 OTTHUMG00000151904.1 pseudo_consens,overlapping_locus +35688 chr2 HAVANA gene 23900693 23901149 457.0 + 0 ENSG00000238111.1 processed_pseudogene AC066692.1 1 OTTHUMG00000151896.1 pseudo_consens +35689 chr2 HAVANA gene 23748664 23927114 10492.0 - 0 ENSG00000119778.14 protein_coding ATAD2B 1 OTTHUMG00000151902.4 overlapping_locus +35690 chr2 HAVANA gene 23943846 23944351 506.0 + 0 ENSG00000234946.1 processed_pseudogene SDHCP3 1 OTTHUMG00000151897.1 pseudo_consens,overlapping_locus +35691 chr2 ENSEMBL gene 23996795 23997085 291.0 - 0 ENSG00000243847.3 misc_RNA RN7SL610P 3 +35692 chr2 HAVANA gene 23927285 24004909 6882.0 + 0 ENSG00000173960.13 protein_coding UBXN2A 2 OTTHUMG00000125497.3 overlapping_locus +35693 chr2 ENSEMBL gene 24045835 24045938 104.0 + 0 ENSG00000222940.1 snRNA RNU6-370P 3 +35694 chr2 HAVANA gene 24029340 24049575 3847.0 - 0 ENSG00000163026.11 protein_coding WDCP 1 OTTHUMG00000125498.5 +35695 chr2 HAVANA gene 24010081 24063321 4438.0 + 0 ENSG00000205639.10 protein_coding MFSD2B 2 OTTHUMG00000090819.3 ncRNA_host,overlapping_locus +35696 chr2 HAVANA gene 24049701 24063681 1677.0 + 0 ENSG00000119782.13 protein_coding FKBP1B 2 OTTHUMG00000151889.3 overlapping_locus +35697 chr2 HAVANA gene 24067584 24076443 1197.0 - 0 ENSG00000115128.6 protein_coding SF3B6 1 OTTHUMG00000125499.2 +35698 chr2 HAVANA gene 24077433 24085861 2312.0 - 0 ENSG00000115129.13 protein_coding TP53I3 2 OTTHUMG00000090817.3 +35699 chr2 HAVANA gene 24115371 24123477 1056.0 - 0 ENSG00000176732.6 protein_coding PFN4 2 OTTHUMG00000090816.4 +35700 chr2 HAVANA gene 24076526 24169640 4916.0 + 0 ENSG00000219626.8 protein_coding FAM228B 1 OTTHUMG00000151901.3 overlapping_locus +35701 chr2 HAVANA gene 24165884 24175005 1190.0 - 0 ENSG00000232642.1 antisense AC008073.2 2 OTTHUMG00000151892.1 +35702 chr2 HAVANA gene 24124366 24190436 2281.0 + 0 ENSG00000276087.2 protein_coding AC008073.3 2 OTTHUMG00000178849.4 overlapping_locus +35703 chr2 HAVANA gene 24175069 24200849 2265.0 + 0 ENSG00000186453.12 protein_coding FAM228A 1 OTTHUMG00000151903.2 overlapping_locus +35704 chr2 HAVANA gene 24199839 24201698 543.0 - 0 ENSG00000223754.1 antisense AC008073.1 2 OTTHUMG00000151894.1 +35705 chr2 HAVANA gene 24214381 24221516 627.0 + 0 ENSG00000242628.5 antisense AC009228.1 1 OTTHUMG00000151893.1 +35706 chr2 ENSEMBL gene 24273614 24273741 128.0 - 0 ENSG00000251805.1 scaRNA RF00602 3 +35707 chr2 HAVANA gene 24330402 24330674 273.0 + 0 ENSG00000232963.1 processed_pseudogene HMGN2P20 2 OTTHUMG00000157047.1 +35708 chr2 HAVANA gene 24334512 24335152 317.0 + 0 ENSG00000233747.1 processed_pseudogene RPL36AP13 1 OTTHUMG00000157046.1 pseudo_consens +35709 chr2 HAVANA gene 24202864 24360714 12022.0 - 0 ENSG00000198399.14 protein_coding ITSN2 1 OTTHUMG00000090818.7 ncRNA_host +35710 chr2 ENSEMBL gene 24564630 24564738 109.0 - 0 ENSG00000202430.1 rRNA_pseudogene RNA5SP88 3 +35711 chr2 ENSEMBL gene 24676309 24676415 107.0 + 0 ENSG00000206732.1 snRNA RNU6-936P 3 +35712 chr2 HAVANA gene 24491914 24770702 8633.0 + 0 ENSG00000084676.15 protein_coding NCOA1 2 OTTHUMG00000125523.6 ncRNA_host +35713 chr2 HAVANA gene 24789734 24793382 1917.0 - 0 ENSG00000184924.5 protein_coding PTRHD1 2 OTTHUMG00000151978.3 +35714 chr2 HAVANA gene 24793136 24822376 5518.0 + 0 ENSG00000138092.10 protein_coding CENPO 1 OTTHUMG00000125525.3 +35715 chr2 HAVANA gene 24825610 24826717 1108.0 + 0 ENSG00000271936.1 antisense AC012073.1 2 OTTHUMG00000185752.1 +35716 chr2 HAVANA gene 24819169 24919839 6058.0 - 0 ENSG00000138031.14 protein_coding ADCY3 1 OTTHUMG00000094765.7 +35717 chr2 HAVANA gene 24968958 24969224 267.0 - 0 ENSG00000237953.1 processed_pseudogene AC013267.1 1 OTTHUMG00000151979.1 pseudo_consens,overlapping_locus +35718 chr2 ENSEMBL gene 24969388 24969477 90.0 - 0 ENSG00000202479.1 snoRNA RF00016 3 +35719 chr2 HAVANA gene 24943636 24972094 5624.0 - 0 ENSG00000115137.11 protein_coding DNAJC27 2 OTTHUMG00000125524.3 ncRNA_host,overlapping_locus +35720 chr2 ENSEMBL gene 25008845 25008946 102.0 - 0 ENSG00000207069.1 misc_RNA RF00019 3 +35721 chr2 HAVANA gene 24971390 25039694 5651.0 + 0 ENSG00000224165.5 antisense DNAJC27-AS1 1 OTTHUMG00000151981.2 +35722 chr2 ENSEMBL gene 25058032 25058329 298.0 + 0 ENSG00000276653.1 misc_RNA RN7SL856P 3 +35723 chr2 HAVANA gene 25079901 25081689 1357.0 - 0 ENSG00000229593.1 processed_pseudogene SUCLA2P3 1 OTTHUMG00000151987.1 pseudo_consens +35724 chr2 HAVANA gene 25042130 25159137 10591.0 + 0 ENSG00000084710.13 protein_coding EFR3B 2 OTTHUMG00000151988.6 ncRNA_host +35725 chr2 HAVANA gene 25160853 25168903 1538.0 - 0 ENSG00000115138.10 protein_coding POMC 2 OTTHUMG00000094764.5 +35726 chr2 HAVANA gene 25204313 25209202 466.0 + 0 ENSG00000230452.1 antisense LINC01381 1 OTTHUMG00000152010.1 +35727 chr2 ENSEMBL gene 25328640 25328721 82.0 - 0 ENSG00000221445.3 miRNA MIR1301 3 +35728 chr2 HAVANA gene 25227855 25342590 12020.0 - 0 ENSG00000119772.16 protein_coding DNMT3A 2 OTTHUMG00000094777.6 ncRNA_host +35729 chr2 HAVANA gene 25369136 25375845 1809.0 - 0 ENSG00000235072.2 lincRNA AC012074.1 1 OTTHUMG00000152130.2 +35730 chr2 HAVANA gene 25421117 25427643 414.0 + 0 ENSG00000224220.1 antisense AC104699.1 1 OTTHUMG00000155125.1 +35731 chr2 HAVANA gene 25377198 25673647 7146.0 - 0 ENSG00000138101.18 protein_coding DTNB 1 OTTHUMG00000152129.7 +35732 chr2 ENSEMBL gene 25697076 25697188 113.0 - 0 ENSG00000201160.1 misc_RNA RF00019 3 +35733 chr2 HAVANA gene 25809925 25810656 732.0 - 0 ENSG00000187536.4 processed_pseudogene TPM3P7 1 OTTHUMG00000152172.1 pseudo_consens,overlapping_locus +35734 chr2 HAVANA gene 25822469 25822950 482.0 + 0 ENSG00000217643.1 processed_pseudogene PTGES3P2 1 OTTHUMG00000152177.1 pseudo_consens +35735 chr2 HAVANA gene 25856461 25856966 506.0 - 0 ENSG00000218682.1 processed_pseudogene AC064847.1 1 OTTHUMG00000152174.1 pseudo_consens,overlapping_locus +35736 chr2 HAVANA gene 25733753 25878516 13023.0 - 0 ENSG00000143970.16 protein_coding ASXL2 2 OTTHUMG00000152176.3 overlapping_locus +35737 chr2 HAVANA gene 25886964 25887206 243.0 - 0 ENSG00000217718.1 processed_pseudogene NDUFB4P4 1 OTTHUMG00000152175.2 pseudo_consens +35738 chr2 HAVANA gene 25926596 25982749 6403.0 - 0 ENSG00000084731.14 protein_coding KIF3C 1 OTTHUMG00000094797.4 +35739 chr2 HAVANA gene 25994794 25995081 288.0 + 0 ENSG00000237629.1 processed_pseudogene UQCRHP2 1 OTTHUMG00000151934.1 pseudo_consens +35740 chr2 HAVANA gene 26028208 26028612 372.0 - 0 ENSG00000268412.2 processed_pseudogene TRMT112P6 1 OTTHUMG00000187085.1 pseudo_consens +35741 chr2 ENSEMBL gene 26042675 26042781 107.0 + 0 ENSG00000199872.1 snRNA RNU6-942P 3 +35742 chr2 HAVANA gene 26101317 26102136 820.0 - 0 ENSG00000235440.1 processed_pseudogene AC011742.3 1 OTTHUMG00000157048.1 pseudo_consens +35743 chr2 HAVANA gene 26034107 26137454 3631.0 + 0 ENSG00000084733.10 protein_coding RAB10 2 OTTHUMG00000094796.3 ncRNA_host +35744 chr2 HAVANA gene 26140263 26141264 352.0 - 0 ENSG00000231655.1 processed_pseudogene AC011742.2 1 OTTHUMG00000151932.1 pseudo_consens +35745 chr2 HAVANA gene 26149204 26150731 1216.0 + 0 ENSG00000214465.3 processed_pseudogene SMARCE1P6 1 OTTHUMG00000151936.2 pseudo_consens +35746 chr2 HAVANA gene 26160023 26161136 434.0 + 0 ENSG00000227133.1 processed_pseudogene AC011742.1 2 OTTHUMG00000151933.1 +35747 chr2 HAVANA gene 26162056 26162554 499.0 + 0 ENSG00000237951.1 processed_pseudogene PPIL1P1 1 OTTHUMG00000151937.1 pseudo_consens +35748 chr2 HAVANA gene 26173091 26189663 5939.0 + 0 ENSG00000157833.12 protein_coding GAREM2 1 OTTHUMG00000151935.2 +35749 chr2 HAVANA gene 26190635 26244726 3811.0 - 0 ENSG00000084754.11 protein_coding HADHA 2 OTTHUMG00000096979.10 +35750 chr2 HAVANA gene 26243170 26290468 4280.0 + 0 ENSG00000138029.13 protein_coding HADHB 2 OTTHUMG00000096978.4 +35751 chr2 HAVANA gene 26308173 26346817 5761.0 - 0 ENSG00000173567.14 protein_coding ADGRF3 2 OTTHUMG00000150225.5 +35752 chr2 HAVANA gene 26308547 26395891 8552.0 + 0 ENSG00000138018.17 protein_coding SELENOI 2 OTTHUMG00000151931.4 +35753 chr2 HAVANA gene 26401916 26456711 3048.0 + 0 ENSG00000157856.11 protein_coding DRC1 2 OTTHUMG00000125531.6 +35754 chr2 HAVANA gene 26457203 26558698 7885.0 - 0 ENSG00000115155.17 protein_coding OTOF 2 OTTHUMG00000096977.4 +35755 chr2 HAVANA gene 26562582 26579532 2507.0 + 0 ENSG00000173557.14 protein_coding C2orf70 1 OTTHUMG00000151994.3 +35756 chr2 HAVANA gene 26581202 26641368 1049.0 - 0 ENSG00000157884.10 protein_coding CIB4 2 OTTHUMG00000151993.2 +35757 chr2 HAVANA gene 26671254 26674464 567.0 - 0 ENSG00000225378.1 antisense AC015977.2 1 OTTHUMG00000151995.1 +35758 chr2 HAVANA gene 26678219 26678510 292.0 - 0 ENSG00000225024.1 processed_pseudogene AC015977.1 1 OTTHUMG00000151997.1 pseudo_consens +35759 chr2 HAVANA gene 26692690 26733420 6223.0 + 0 ENSG00000171303.6 protein_coding KCNK3 2 OTTHUMG00000125530.2 +35760 chr2 HAVANA gene 26764284 26781231 3902.0 + 0 ENSG00000213699.8 protein_coding SLC35F6 2 OTTHUMG00000128407.2 overlapping_locus +35761 chr2 HAVANA gene 26764289 26801067 1983.0 + 0 ENSG00000115163.14 protein_coding CENPA 2 OTTHUMG00000097073.4 overlapping_locus +35762 chr2 HAVANA gene 26827169 26827520 352.0 - 0 ENSG00000145835.6 processed_pseudogene CDKN2AIPNLP2 1 OTTHUMG00000151989.2 pseudo_consens +35763 chr2 HAVANA gene 26847747 26950351 7079.0 + 0 ENSG00000157851.16 protein_coding DPYSL5 2 OTTHUMG00000097071.3 +35764 chr2 HAVANA gene 26950308 27009807 306.0 - 0 ENSG00000230286.1 antisense AC013472.2 2 OTTHUMG00000151992.1 overlapping_locus +35765 chr2 HAVANA gene 26984776 27014612 2563.0 - 0 ENSG00000205500.8 processed_transcript AC013472.1 1 OTTHUMG00000151998.2 overlapping_locus +35766 chr2 HAVANA gene 26970612 27027196 3459.0 + 0 ENSG00000084764.11 protein_coding MAPRE3 1 OTTHUMG00000097067.5 +35767 chr2 HAVANA gene 27032910 27041695 4910.0 + 0 ENSG00000119777.19 protein_coding TMEM214 2 OTTHUMG00000151999.4 +35768 chr2 HAVANA gene 27049683 27050264 407.0 - 0 ENSG00000231636.1 antisense AGBL5-AS1 2 OTTHUMG00000151996.1 +35769 chr2 HAVANA gene 27053618 27054276 659.0 - 0 ENSG00000272056.1 antisense AC013472.3 2 OTTHUMG00000185589.1 +35770 chr2 HAVANA gene 27061038 27061815 339.0 + 0 ENSG00000229122.1 sense_intronic AGBL5-IT1 2 OTTHUMG00000151991.1 overlapping_locus +35771 chr2 HAVANA gene 27062428 27062907 480.0 - 0 ENSG00000272148.1 antisense AC013403.2 2 OTTHUMG00000185590.1 +35772 chr2 HAVANA gene 27042364 27070622 5283.0 + 0 ENSG00000084693.15 protein_coding AGBL5 1 OTTHUMG00000128406.7 overlapping_locus +35773 chr2 HAVANA gene 27070472 27071773 719.0 - 0 ENSG00000228474.5 protein_coding OST4 1 OTTHUMG00000151990.4 +35774 chr2 HAVANA gene 27078567 27086408 3958.0 + 0 ENSG00000138080.13 protein_coding EMILIN1 1 OTTHUMG00000097069.4 +35775 chr2 HAVANA gene 27086747 27100772 3060.0 + 0 ENSG00000138030.12 protein_coding KHK 2 OTTHUMG00000097077.3 +35776 chr2 HAVANA gene 27098889 27119115 4039.0 - 0 ENSG00000138028.15 protein_coding CGREF1 2 OTTHUMG00000152009.3 +35777 chr2 HAVANA gene 27123789 27130812 4630.0 + 0 ENSG00000143994.13 protein_coding ABHD1 2 OTTHUMG00000097072.6 +35778 chr2 HAVANA gene 27130756 27134675 3221.0 - 0 ENSG00000138073.13 protein_coding PREB 1 OTTHUMG00000097076.3 +35779 chr2 HAVANA gene 27136848 27139410 2008.0 - 0 ENSG00000186143.11 protein_coding PRR30 1 OTTHUMG00000128408.6 +35780 chr2 HAVANA gene 27149004 27156974 5123.0 + 0 ENSG00000163792.6 protein_coding TCF23 2 OTTHUMG00000152031.2 +35781 chr2 HAVANA gene 27158563 27159229 263.0 - 0 ENSG00000236099.1 unprocessed_pseudogene AC013403.1 2 OTTHUMG00000152030.1 +35782 chr2 HAVANA gene 27199587 27212958 5606.0 - 0 ENSG00000138074.14 protein_coding SLC5A6 2 OTTHUMG00000097075.9 +35783 chr2 HAVANA gene 27212027 27217178 2019.0 + 0 ENSG00000138085.16 protein_coding ATRAID 2 OTTHUMG00000128405.6 +35784 chr2 HAVANA gene 27217390 27243943 8422.0 + 0 ENSG00000084774.13 protein_coding CAD 1 OTTHUMG00000097070.5 +35785 chr2 HAVANA gene 27253684 27275817 5978.0 - 0 ENSG00000115194.10 protein_coding SLC30A3 1 OTTHUMG00000128409.4 +35786 chr2 HAVANA gene 27275421 27281499 2350.0 + 0 ENSG00000163793.12 protein_coding DNAJC5G 2 OTTHUMG00000097079.3 +35787 chr2 HAVANA gene 27282392 27307439 2764.0 + 0 ENSG00000138100.13 protein_coding TRIM54 2 OTTHUMG00000097078.3 +35788 chr2 HAVANA gene 27307400 27308445 795.0 - 0 ENSG00000163794.6 protein_coding UCN 2 OTTHUMG00000097068.4 +35789 chr2 HAVANA gene 27309492 27325680 5625.0 - 0 ENSG00000115204.14 protein_coding MPV17 1 OTTHUMG00000097074.7 +35790 chr2 HAVANA gene 27335535 27342599 3253.0 + 0 ENSG00000234945.7 antisense GTF3C2-AS1 1 OTTHUMG00000151913.6 +35791 chr2 HAVANA gene 27325849 27357034 5839.0 - 0 ENSG00000115207.13 protein_coding GTF3C2 1 OTTHUMG00000097785.9 +35792 chr2 HAVANA gene 27356246 27367622 3412.0 + 0 ENSG00000234072.1 antisense AC074117.1 2 OTTHUMG00000151914.1 +35793 chr2 HAVANA gene 27364352 27370486 5341.0 - 0 ENSG00000115211.15 protein_coding EIF2B4 2 OTTHUMG00000151927.2 +35794 chr2 HAVANA gene 27370496 27377533 3765.0 + 0 ENSG00000115234.10 protein_coding SNX17 2 OTTHUMG00000097781.2 +35795 chr2 HAVANA gene 27377231 27380790 2365.0 - 0 ENSG00000163795.13 protein_coding ZNF513 2 OTTHUMG00000097783.3 +35796 chr2 HAVANA gene 27392784 27393367 584.0 - 0 ENSG00000213453.3 processed_pseudogene FTH1P3 1 OTTHUMG00000151928.1 pseudo_consens,overlapping_locus +35797 chr2 HAVANA gene 27381194 27409687 4092.0 - 0 ENSG00000115241.10 protein_coding PPM1G 2 OTTHUMG00000097788.2 overlapping_locus +35798 chr2 HAVANA gene 27427790 27442259 5329.0 + 0 ENSG00000115216.13 protein_coding NRBP1 2 OTTHUMG00000097789.3 +35799 chr2 HAVANA gene 27442366 27446481 1403.0 + 0 ENSG00000157992.12 protein_coding KRTCAP3 2 OTTHUMG00000097782.2 +35800 chr2 HAVANA gene 27455156 27455862 397.0 + 0 ENSG00000235267.1 processed_pseudogene AC074117.2 1 OTTHUMG00000151938.1 pseudo_consens +35801 chr2 ENSEMBL gene 27475494 27475595 102.0 - 0 ENSG00000200003.1 snRNA RNU6-986P 3 +35802 chr2 HAVANA gene 27444371 27489789 8401.0 - 0 ENSG00000138002.14 protein_coding IFT172 2 OTTHUMG00000128425.4 ncRNA_host +35803 chr2 HAVANA gene 27491883 27495245 1982.0 - 0 ENSG00000115226.9 protein_coding FNDC4 2 OTTHUMG00000097787.2 +35804 chr2 HAVANA gene 27496842 27523684 3146.0 + 0 ENSG00000084734.8 protein_coding GCKR 1 OTTHUMG00000128426.2 +35805 chr2 HAVANA gene 27537386 27582721 16402.0 + 0 ENSG00000221843.4 protein_coding C2orf16 2 OTTHUMG00000159099.2 +35806 chr2 HAVANA gene 27582969 27623215 4398.0 + 0 ENSG00000243943.9 protein_coding ZNF512 2 OTTHUMG00000097786.5 overlapping_locus +35807 chr2 HAVANA gene 27625639 27629012 2844.0 - 0 ENSG00000176714.9 protein_coding CCDC121 2 OTTHUMG00000128427.4 +35808 chr2 HAVANA gene 27583046 27635174 1741.0 + 0 ENSG00000259080.1 processed_transcript AC074091.1 2 OTTHUMG00000171804.1 overlapping_locus +35809 chr2 ENSEMBL gene 27642043 27642169 127.0 - 0 ENSG00000206731.1 snoRNA RF00340 3 +35810 chr2 HAVANA gene 27628247 27651508 3746.0 + 0 ENSG00000198522.13 protein_coding GPN1 2 OTTHUMG00000097784.5 overlapping_locus +35811 chr2 HAVANA gene 27650812 27663840 5309.0 - 0 ENSG00000119760.15 protein_coding SUPT7L 2 OTTHUMG00000151947.2 +35812 chr2 HAVANA gene 27663471 27694976 5207.0 + 0 ENSG00000163798.13 protein_coding SLC4A1AP 2 OTTHUMG00000151944.4 +35813 chr2 HAVANA gene 27705786 27715732 2860.0 - 0 ENSG00000205334.2 lincRNA LINC01460 1 OTTHUMG00000151945.1 +35814 chr2 HAVANA gene 27781364 27891098 3625.0 - 0 ENSG00000171174.14 protein_coding RBKS 2 OTTHUMG00000097833.3 +35815 chr2 HAVANA gene 27896116 27897195 1080.0 - 0 ENSG00000270846.1 processed_pseudogene AC021171.2 1 OTTHUMG00000184441.1 pseudo_consens +35816 chr2 HAVANA gene 27771717 27988087 1539.0 + 0 ENSG00000243147.7 protein_coding MRPL33 2 OTTHUMG00000097795.2 overlapping_locus +35817 chr2 ENSEMBL gene 27996367 27996449 83.0 + 0 ENSG00000265321.1 miRNA MIR4263 3 +35818 chr2 HAVANA gene 28015777 28016482 706.0 - 0 ENSG00000270528.1 processed_pseudogene AC021171.1 1 OTTHUMG00000184443.1 pseudo_consens +35819 chr2 ENSEMBL gene 28134408 28134585 178.0 - 0 ENSG00000277035.1 misc_RNA RF02271 3 +35820 chr2 HAVANA gene 28308161 28308570 410.0 + 0 ENSG00000225991.1 processed_pseudogene RPL23AP34 1 OTTHUMG00000157055.1 pseudo_consens,overlapping_locus +35821 chr2 HAVANA gene 28307691 28310459 2110.0 - 0 ENSG00000223522.1 antisense AC093690.1 2 OTTHUMG00000151943.2 +35822 chr2 HAVANA gene 27889941 28338901 3392.0 + 0 ENSG00000158019.20 protein_coding BABAM2 2 OTTHUMG00000097831.4 ncRNA_host,overlapping_locus +35823 chr2 HAVANA gene 28384409 28394672 3001.0 - 0 ENSG00000229951.5 antisense FLJ31356 2 OTTHUMG00000151946.1 +35824 chr2 HAVANA gene 28396815 28397110 296.0 + 0 ENSG00000270640.1 sense_intronic AC104695.3 2 OTTHUMG00000185291.1 overlapping_locus +35825 chr2 HAVANA gene 28392448 28417312 7157.0 + 0 ENSG00000075426.11 protein_coding FOSL2 1 OTTHUMG00000097832.6 overlapping_locus +35826 chr2 HAVANA gene 28425945 28426719 775.0 + 0 ENSG00000270210.1 lincRNA AC104695.2 2 OTTHUMG00000185292.1 +35827 chr2 HAVANA gene 28448167 28450184 849.0 - 0 ENSG00000227938.1 lincRNA AC104695.1 2 OTTHUMG00000151942.1 +35828 chr2 HAVANA gene 28460256 28460361 106.0 - 0 ENSG00000242915.1 processed_pseudogene SNRPGP7 1 OTTHUMG00000159107.1 pseudo_consens +35829 chr2 HAVANA gene 28457145 28643788 8238.0 + 0 ENSG00000163803.12 protein_coding PLB1 1 OTTHUMG00000152014.4 +35830 chr2 HAVANA gene 28633282 28664540 581.0 - 0 ENSG00000230730.1 antisense AC074011.1 2 OTTHUMG00000152013.1 +35831 chr2 ENSEMBL gene 28683976 28684083 108.0 + 0 ENSG00000222232.1 rRNA_pseudogene RNA5SP89 3 +35832 chr2 HAVANA gene 28708953 28736205 1438.0 - 0 ENSG00000226833.5 antisense AC092164.1 1 OTTHUMG00000152012.1 +35833 chr2 HAVANA gene 28751640 28802940 5760.0 + 0 ENSG00000213639.9 protein_coding PPP1CB 2 OTTHUMG00000152011.5 overlapping_locus +35834 chr2 HAVANA gene 28810281 28810706 426.0 - 0 ENSG00000273233.1 lincRNA AC097724.1 2 OTTHUMG00000185837.1 +35835 chr2 HAVANA gene 28782517 28850611 3483.0 + 0 ENSG00000163806.15 protein_coding SPDYA 1 OTTHUMG00000074041.3 overlapping_locus +35836 chr2 HAVANA gene 28849821 28870301 2056.0 - 0 ENSG00000171103.10 protein_coding TRMT61B 2 OTTHUMG00000128433.2 +35837 chr2 ENSEMBL gene 28913664 28913748 85.0 + 0 ENSG00000264994.1 snoRNA SNORD92 3 +35838 chr2 ENSEMBL gene 28927067 28927144 78.0 + 0 ENSG00000265145.1 snoRNA SNORD53 3 +35839 chr2 ENSEMBL gene 28927243 28927340 98.0 - 0 ENSG00000222224.1 misc_RNA RF00019 3 +35840 chr2 ENSEMBL gene 28927983 28928060 78.0 + 0 ENSG00000265706.1 snoRNA SNORD53B 3 +35841 chr2 HAVANA gene 28894643 28948222 4130.0 + 0 ENSG00000163811.11 protein_coding WDR43 1 OTTHUMG00000152015.5 ncRNA_host +35842 chr2 ENSEMBL gene 28972414 28972521 108.0 - 0 ENSG00000200283.1 misc_RNA RF00019 3 +35843 chr2 HAVANA gene 28956611 29061373 19816.0 + 0 ENSG00000189350.12 protein_coding TOGARAM2 2 OTTHUMG00000128432.7 +35844 chr2 HAVANA gene 29060976 29074261 7273.0 - 0 ENSG00000179270.6 protein_coding PCARE 1 OTTHUMG00000152024.3 +35845 chr2 HAVANA gene 29096843 29097525 402.0 - 0 ENSG00000229224.1 antisense AC105398.1 1 OTTHUMG00000152025.1 +35846 chr2 HAVANA gene 29097705 29189643 7775.0 + 0 ENSG00000115295.19 protein_coding CLIP4 1 OTTHUMG00000097837.4 +35847 chr2 ENSEMBL gene 29681027 29681323 297.0 - 0 ENSG00000242699.3 misc_RNA RN7SL516P 3 +35848 chr2 HAVANA gene 29890371 29892354 691.0 + 0 ENSG00000230737.1 antisense AC106870.2 2 OTTHUMG00000152001.1 +35849 chr2 HAVANA gene 29899597 29907199 200.0 + 0 ENSG00000197644.2 antisense AC106870.1 2 OTTHUMG00000152004.1 +35850 chr2 HAVANA gene 29192774 29921566 6990.0 - 0 ENSG00000171094.17 protein_coding ALK 1 OTTHUMG00000152034.3 ncRNA_host +35851 chr2 HAVANA gene 30077093 30078272 435.0 + 0 ENSG00000225943.1 processed_pseudogene AC016907.1 1 OTTHUMG00000152003.1 pseudo_consens +35852 chr2 HAVANA gene 30051066 30143804 4218.0 - 0 ENSG00000233862.5 antisense AC016907.2 1 OTTHUMG00000152000.2 +35853 chr2 HAVANA gene 30146941 30160533 3421.0 + 0 ENSG00000119801.12 protein_coding YPEL5 2 OTTHUMG00000097839.4 +35854 chr2 ENSEMBL gene 30187434 30187566 133.0 + 0 ENSG00000207187.1 snoRNA SNORA10B 3 +35855 chr2 HAVANA gene 30209995 30210307 276.0 + 0 ENSG00000231712.1 processed_pseudogene AC104698.1 1 OTTHUMG00000152128.2 pseudo_consens +35856 chr2 HAVANA gene 30231369 30323730 4697.0 + 0 ENSG00000213626.12 protein_coding LBH 1 OTTHUMG00000152051.5 +35857 chr2 HAVANA gene 30346659 30352431 2952.0 + 0 ENSG00000235997.2 lincRNA LINC01936 2 OTTHUMG00000152052.3 +35858 chr2 HAVANA gene 30408170 30408346 177.0 + 0 ENSG00000280154.1 TEC AC073255.1 2 OTTHUMG00000175789.1 +35859 chr2 HAVANA gene 30447226 30644225 7517.0 + 0 ENSG00000172954.13 protein_coding LCLAT1 2 OTTHUMG00000099349.7 +35860 chr2 HAVANA gene 30677762 30679895 2134.0 + 0 ENSG00000278908.1 TEC AC132154.1 2 OTTHUMG00000175792.2 +35861 chr2 HAVANA gene 30746444 30746701 258.0 - 0 ENSG00000230118.1 processed_pseudogene AC092569.1 2 OTTHUMG00000152113.1 overlapping_locus +35862 chr2 HAVANA gene 30722771 30820542 5191.0 - 0 ENSG00000162949.16 protein_coding CAPN13 2 OTTHUMG00000152053.4 overlapping_locus +35863 chr2 HAVANA gene 30887626 30897387 805.0 - 0 ENSG00000285984.1 lincRNA AC009301.1 2 OTTHUMG00000192922.1 +35864 chr2 HAVANA gene 30986939 30991426 368.0 + 0 ENSG00000234579.1 antisense AC009305.1 2 OTTHUMG00000152041.1 +35865 chr2 HAVANA gene 30910467 31155202 4567.0 - 0 ENSG00000158089.14 protein_coding GALNT14 2 OTTHUMG00000074077.3 +35866 chr2 ENSEMBL gene 31228312 31228410 99.0 + 0 ENSG00000201671.1 rRNA_pseudogene RNA5SP90 3 +35867 chr2 HAVANA gene 31173056 31233858 4014.0 - 0 ENSG00000214711.9 protein_coding CAPN14 2 OTTHUMG00000152039.3 +35868 chr2 HAVANA gene 31234337 31269447 4636.0 + 0 ENSG00000013016.15 protein_coding EHD3 2 OTTHUMG00000099365.1 +35869 chr2 HAVANA gene 31290762 31291604 531.0 + 0 ENSG00000213620.3 processed_pseudogene AL121657.1 1 OTTHUMG00000152040.1 pseudo_consens +35870 chr2 HAVANA gene 31334321 31414715 6037.0 - 0 ENSG00000158125.9 protein_coding XDH 2 OTTHUMG00000099385.3 +35871 chr2 HAVANA gene 31526942 31563464 646.0 + 0 ENSG00000228563.1 antisense AL133247.1 1 OTTHUMG00000152058.1 +35872 chr2 HAVANA gene 31522480 31581067 4648.0 - 0 ENSG00000277893.1 protein_coding SRD5A2 2 OTTHUMG00000152057.3 +35873 chr2 HAVANA gene 31651381 31651862 482.0 + 0 ENSG00000270422.1 processed_pseudogene AL133247.2 1 OTTHUMG00000184338.1 pseudo_consens +35874 chr2 HAVANA gene 31793823 31803980 418.0 - 0 ENSG00000223647.1 lincRNA LINC01946 1 OTTHUMG00000152056.1 +35875 chr2 HAVANA gene 31822591 31823436 846.0 - 0 ENSG00000237007.4 processed_pseudogene KRT18P52 1 OTTHUMG00000152055.1 pseudo_consens,overlapping_locus +35876 chr2 HAVANA gene 31823413 31823817 405.0 - 0 ENSG00000242272.1 processed_pseudogene AK2P2 1 OTTHUMG00000152054.1 pseudo_consens,overlapping_locus +35877 chr2 HAVANA gene 31852976 31853423 448.0 - 0 ENSG00000273165.1 lincRNA AL121652.1 2 OTTHUMG00000185839.1 +35878 chr2 HAVANA gene 31865060 32011230 5220.0 - 0 ENSG00000162959.13 protein_coding MEMO1 1 OTTHUMG00000128453.7 overlapping_locus +35879 chr2 HAVANA gene 32013061 32013368 308.0 + 0 ENSG00000271228.1 antisense AL121655.1 2 OTTHUMG00000185176.1 +35880 chr2 HAVANA gene 31867809 32039812 2745.0 - 0 ENSG00000162961.13 protein_coding DPY30 2 OTTHUMG00000128457.3 overlapping_locus +35881 chr2 HAVANA gene 32063547 32157637 9490.0 + 0 ENSG00000021574.12 protein_coding SPAST 2 OTTHUMG00000128455.7 +35882 chr2 HAVANA gene 32165046 32165757 712.0 - 0 ENSG00000272716.1 lincRNA AL121658.1 2 OTTHUMG00000185842.1 +35883 chr2 HAVANA gene 32201600 32203999 2400.0 + 0 ENSG00000229816.1 processed_pseudogene DDX50P1 1 OTTHUMG00000152105.1 pseudo_consens,overlapping_locus +35884 chr2 ENSEMBL gene 32214456 32214562 107.0 - 0 ENSG00000201113.1 snRNA RNU6-647P 3 +35885 chr2 HAVANA gene 32165841 32224379 5410.0 + 0 ENSG00000152683.14 protein_coding SLC30A6 2 OTTHUMG00000128456.3 overlapping_locus +35886 chr2 HAVANA gene 32224453 32265854 3624.0 - 0 ENSG00000091106.18 protein_coding NLRC4 2 OTTHUMG00000152107.2 +35887 chr2 HAVANA gene 32277910 32316594 12233.0 + 0 ENSG00000119820.10 protein_coding YIPF4 2 OTTHUMG00000128452.3 +35888 chr2 HAVANA gene 32321638 32323002 1365.0 + 0 ENSG00000272754.1 lincRNA AL133245.1 2 OTTHUMG00000185846.2 +35889 chr2 HAVANA gene 32377631 32379599 697.0 - 0 ENSG00000230046.1 antisense BIRC6-AS1 2 OTTHUMG00000152106.1 +35890 chr2 HAVANA gene 32521927 32523547 1621.0 + 0 ENSG00000276334.1 sense_intronic AL133243.2 2 OTTHUMG00000188157.1 +35891 chr2 HAVANA gene 32526504 32529507 3004.0 + 0 ENSG00000276517.1 sense_intronic AL133243.3 2 OTTHUMG00000188158.1 +35892 chr2 ENSEMBL gene 32532153 32532246 94.0 + 0 ENSG00000207653.1 miRNA MIR558 3 +35893 chr2 HAVANA gene 32548675 32549040 366.0 + 0 ENSG00000274159.1 sense_intronic AL133243.1 2 OTTHUMG00000188159.1 +35894 chr2 HAVANA gene 32563328 32566436 3109.0 + 0 ENSG00000279544.1 TEC AL133243.4 2 OTTHUMG00000188160.1 +35895 chr2 HAVANA gene 32557273 32574818 1066.0 - 0 ENSG00000279897.2 transcribed_unprocessed_pseudogene BIRC6-AS2 2 OTTHUMG00000189406.2 +35896 chr2 HAVANA gene 32357028 32618899 17723.0 + 0 ENSG00000115760.14 protein_coding BIRC6 1 OTTHUMG00000150528.8 ncRNA_host +35897 chr2 ENSEMBL gene 32635255 32635331 77.0 + 0 ENSG00000265057.1 miRNA MIR4765 3 +35898 chr2 HAVANA gene 32628032 32821051 3185.0 + 0 ENSG00000018699.12 protein_coding TTC27 1 OTTHUMG00000152134.6 ncRNA_host +35899 chr2 HAVANA gene 32825359 32926693 3187.0 + 0 ENSG00000230876.7 lincRNA LINC00486 2 OTTHUMG00000152136.3 +35900 chr2 HAVANA gene 32927127 32928405 482.0 + 0 ENSG00000236854.1 lincRNA AL121656.1 1 OTTHUMG00000152135.1 +35901 chr2 ENSEMBL gene 32945339 32945451 113.0 - 0 ENSG00000206951.1 misc_RNA RF00019 3 +35902 chr2 HAVANA gene 33056333 33063113 258.0 - 0 ENSG00000223951.1 processed_pseudogene AL133244.1 2 OTTHUMG00000152123.2 +35903 chr2 HAVANA gene 33274465 33281261 1912.0 - 0 ENSG00000285577.1 antisense AC019127.1 2 OTTHUMG00000192830.1 +35904 chr2 ENSEMBL gene 33285769 33285887 119.0 - 0 ENSG00000212204.1 rRNA_pseudogene RNA5SP91 3 +35905 chr2 ENSEMBL gene 33332898 33333007 110.0 + 0 ENSG00000252246.1 rRNA_pseudogene RNA5SP92 3 +35906 chr2 HAVANA gene 32946972 33399509 7329.0 + 0 ENSG00000049323.15 protein_coding LTBP1 1 OTTHUMG00000152118.14 +35907 chr2 ENSEMBL gene 33418516 33418564 49.0 + 0 ENSG00000283591.1 miRNA MIR4430 3 +35908 chr2 HAVANA gene 33555047 33563547 338.0 - 0 ENSG00000237133.1 antisense AC020594.1 1 OTTHUMG00000152537.1 +35909 chr2 HAVANA gene 33436324 33564750 11118.0 + 0 ENSG00000152689.17 protein_coding RASGRP3 2 OTTHUMG00000152124.19 +35910 chr2 HAVANA gene 33583658 33599382 4921.0 - 0 ENSG00000119812.18 protein_coding FAM98A 2 OTTHUMG00000152152.5 +35911 chr2 HAVANA gene 33602041 33602286 246.0 + 0 ENSG00000238038.1 processed_pseudogene ATP6V0E1P3 1 OTTHUMG00000152159.3 pseudo_consens +35912 chr2 HAVANA gene 33636502 33637425 924.0 + 0 ENSG00000187999.4 processed_pseudogene HNRNPA1P61 1 OTTHUMG00000152163.3 pseudo_consens +35913 chr2 HAVANA gene 33722721 33728207 2528.0 - 0 ENSG00000239649.3 transcribed_processed_pseudogene MYADML 1 OTTHUMG00000099399.3 pseudo_consens +35914 chr2 HAVANA gene 33839782 33840678 897.0 - 0 ENSG00000235064.1 processed_pseudogene SLC25A5P2 1 OTTHUMG00000152137.1 pseudo_consens +35915 chr2 HAVANA gene 34067226 34069550 597.0 + 0 ENSG00000237790.1 lincRNA LINC01318 2 OTTHUMG00000152139.1 overlapping_locus +35916 chr2 HAVANA gene 34134371 34220575 3389.0 - 0 ENSG00000285754.1 lincRNA AC008170.1 2 OTTHUMG00000192896.1 +35917 chr2 HAVANA gene 34692290 34703606 912.0 - 0 ENSG00000272027.2 lincRNA AC073218.2 2 OTTHUMG00000185622.2 fragmented_locus +35918 chr2 HAVANA gene 34734975 34737118 171.0 - 0 ENSG00000232153.2 lincRNA AC073218.1 2 OTTHUMG00000152140.2 +35919 chr2 HAVANA gene 33706886 34738231 6075.0 + 0 ENSG00000228262.9 lincRNA LINC01320 1 OTTHUMG00000152144.8 +35920 chr2 ENSEMBL gene 34809233 34809556 324.0 - 0 ENSG00000264352.2 misc_RNA RN7SL602P 3 +35921 chr2 HAVANA gene 34998273 35000160 499.0 - 0 ENSG00000237320.2 lincRNA AC019064.1 2 OTTHUMG00000152142.2 +35922 chr2 HAVANA gene 34799850 35185689 4324.0 + 0 ENSG00000226994.7 lincRNA AC012593.1 2 OTTHUMG00000152143.6 +35923 chr2 HAVANA gene 35219377 35219604 228.0 - 0 ENSG00000196085.5 processed_pseudogene AC013442.1 1 OTTHUMG00000152164.3 pseudo_consens +35924 chr2 ENSEMBL gene 35471405 35471486 82.0 + 0 ENSG00000265301.1 miRNA MIR548AD 3 +35925 chr2 ENSEMBL gene 35471605 35471708 104.0 + 0 ENSG00000207255.1 snRNA RNU6-1117P 3 +35926 chr2 HAVANA gene 35471716 35471841 126.0 + 0 ENSG00000229013.1 processed_pseudogene AC083939.1 2 OTTHUMG00000152540.2 +35927 chr2 HAVANA gene 35724759 35725142 384.0 - 0 ENSG00000234587.1 processed_pseudogene MRPL50P1 2 OTTHUMG00000152145.1 +35928 chr2 HAVANA gene 36299388 36299830 443.0 - 0 ENSG00000233752.1 processed_pseudogene AC009414.1 1 OTTHUMG00000152150.1 pseudo_consens +35929 chr2 HAVANA gene 36354749 36355114 366.0 - 0 ENSG00000260025.1 lincRNA AC009414.2 2 OTTHUMG00000175796.1 +35930 chr2 HAVANA gene 36513255 36513732 478.0 - 0 ENSG00000273090.1 antisense AC007378.1 2 OTTHUMG00000185847.1 +35931 chr2 HAVANA gene 36355926 36551135 7122.0 + 0 ENSG00000150938.9 protein_coding CRIM1 1 OTTHUMG00000099419.2 +35932 chr2 HAVANA gene 36531805 36646087 8938.0 - 0 ENSG00000171055.14 protein_coding FEZ2 2 OTTHUMG00000152148.4 +35933 chr2 HAVANA gene 36656322 36656941 620.0 - 0 ENSG00000270677.1 processed_pseudogene AC007363.1 1 OTTHUMG00000184524.1 pseudo_consens +35934 chr2 HAVANA gene 36696690 36814792 3710.0 + 0 ENSG00000205221.12 protein_coding VIT 1 OTTHUMG00000152149.3 +35935 chr2 HAVANA gene 36839922 36842539 2618.0 - 0 ENSG00000279519.1 TEC AC007382.1 2 OTTHUMG00000175841.1 +35936 chr2 ENSEMBL gene 36867398 36867495 98.0 - 0 ENSG00000252756.1 snRNA RNU6-577P 3 +35937 chr2 HAVANA gene 36843640 36966472 8345.0 - 0 ENSG00000115808.11 protein_coding STRN 2 OTTHUMG00000100959.2 ncRNA_host +35938 chr2 HAVANA gene 36968383 37084342 8206.0 - 0 ENSG00000008869.11 protein_coding HEATR5B 1 OTTHUMG00000152158.1 +35939 chr2 HAVANA gene 37084451 37099244 4040.0 + 0 ENSG00000152133.14 protein_coding GPATCH11 2 OTTHUMG00000128469.3 +35940 chr2 HAVANA gene 37148530 37149304 775.0 + 0 ENSG00000224891.1 processed_pseudogene AC007899.1 2 OTTHUMG00000152157.1 +35941 chr2 HAVANA gene 37099210 37157065 10753.0 - 0 ENSG00000055332.17 protein_coding EIF2AK2 2 OTTHUMG00000100962.6 +35942 chr2 HAVANA gene 37194382 37194737 356.0 - 0 ENSG00000233159.1 processed_pseudogene AC007390.1 1 OTTHUMG00000152161.1 pseudo_consens,overlapping_locus +35943 chr2 HAVANA gene 37167820 37196598 1325.0 - 0 ENSG00000138068.10 protein_coding SULT6B1 2 OTTHUMG00000152160.3 overlapping_locus +35944 chr2 HAVANA gene 37208875 37212677 3803.0 + 0 ENSG00000272054.1 sense_intronic AC007390.2 2 OTTHUMG00000185598.1 overlapping_locus +35945 chr2 HAVANA gene 37196488 37216193 4698.0 + 0 ENSG00000218739.9 protein_coding CEBPZOS 1 OTTHUMG00000152162.4 overlapping_locus +35946 chr2 HAVANA gene 37201612 37231713 3629.0 - 0 ENSG00000115816.14 protein_coding CEBPZ 1 OTTHUMG00000100960.3 +35947 chr2 HAVANA gene 37231631 37253403 3651.0 + 0 ENSG00000003509.15 protein_coding NDUFAF7 1 OTTHUMG00000128468.6 +35948 chr2 HAVANA gene 37250502 37324808 10244.0 - 0 ENSG00000115825.9 protein_coding PRKD3 2 OTTHUMG00000100961.5 +35949 chr2 HAVANA gene 37325340 37326797 504.0 + 0 ENSG00000232028.1 lincRNA AC007391.1 1 OTTHUMG00000152509.1 +35950 chr2 ENSEMBL gene 37331770 37331876 107.0 - 0 ENSG00000207364.1 snRNA RNU6-939P 3 +35951 chr2 HAVANA gene 37339957 37343796 841.0 - 0 ENSG00000285925.1 antisense AC007391.2 2 OTTHUMG00000192955.1 +35952 chr2 HAVANA gene 37342827 37373322 2696.0 + 0 ENSG00000115828.16 protein_coding QPCT 2 OTTHUMG00000100963.4 +35953 chr2 ENSEMBL gene 37435510 37435608 99.0 - 0 ENSG00000253078.1 snRNA RNU6-1116P 3 +35954 chr2 HAVANA gene 37600136 37646698 548.0 + 0 ENSG00000236213.1 antisense AC006369.1 2 OTTHUMG00000152557.1 +35955 chr2 HAVANA gene 37641882 37738468 10406.0 - 0 ENSG00000163171.7 protein_coding CDC42EP3 2 OTTHUMG00000100971.5 +35956 chr2 HAVANA gene 37744333 37747046 384.0 + 0 ENSG00000236572.1 lincRNA AC006369.2 2 OTTHUMG00000152558.2 +35957 chr2 HAVANA gene 37816915 37817961 1047.0 + 0 ENSG00000225402.1 processed_pseudogene AC010878.1 1 OTTHUMG00000152556.1 pseudo_consens +35958 chr2 HAVANA gene 37826247 37876274 2595.0 - 0 ENSG00000237803.5 lincRNA LINC00211 2 OTTHUMG00000152169.2 +35959 chr2 HAVANA gene 37949911 38067041 3282.0 - 0 ENSG00000235848.4 antisense RMDN2-AS1 2 OTTHUMG00000152578.4 overlapping_locus +35960 chr2 HAVANA gene 37923187 38067142 5999.0 + 0 ENSG00000115841.19 protein_coding RMDN2 2 OTTHUMG00000128487.9 +35961 chr2 HAVANA gene 38066973 38109902 6014.0 - 0 ENSG00000138061.11 protein_coding CYP1B1 1 OTTHUMG00000100970.8 overlapping_locus +35962 chr2 HAVANA gene 38121935 38123881 1947.0 - 0 ENSG00000280276.1 TEC AC009229.4 2 OTTHUMG00000185594.1 +35963 chr2 HAVANA gene 38132637 38138946 351.0 - 0 ENSG00000229160.1 lincRNA AC009229.2 2 OTTHUMG00000152559.1 +35964 chr2 ENSEMBL gene 38147415 38147521 107.0 + 0 ENSG00000199603.1 snRNA RNU6-951P 3 +35965 chr2 HAVANA gene 38193348 38193629 282.0 + 0 ENSG00000273006.1 lincRNA AC009229.3 2 OTTHUMG00000185850.1 +35966 chr2 HAVANA gene 38073447 38231651 7447.0 + 0 ENSG00000232973.12 antisense CYP1B1-AS1 2 OTTHUMG00000128569.15 ncRNA_host +35967 chr2 HAVANA gene 38231568 38232317 750.0 + 0 ENSG00000227770.1 processed_pseudogene RPL7P12 1 OTTHUMG00000152270.2 pseudo_consens +35968 chr2 HAVANA gene 38203363 38239590 622.0 - 0 ENSG00000227292.1 lincRNA AC009229.1 2 OTTHUMG00000152269.2 +35969 chr2 HAVANA gene 38285410 38286410 1001.0 + 0 ENSG00000213594.4 processed_pseudogene GAPDHP25 1 OTTHUMG00000152298.4 pseudo_consens +35970 chr2 HAVANA gene 38294880 38377285 4884.0 - 0 ENSG00000119787.13 protein_coding ATL2 2 OTTHUMG00000102074.9 +35971 chr2 HAVANA gene 38431294 38433573 380.0 + 0 ENSG00000235009.1 lincRNA LINC01883 1 OTTHUMG00000153433.1 +35972 chr2 HAVANA gene 38481851 38482804 954.0 + 0 ENSG00000213553.4 processed_pseudogene RPLP0P6 2 OTTHUMG00000153430.1 +35973 chr2 HAVANA gene 38406719 38515740 1768.0 - 0 ENSG00000231367.5 lincRNA AC011247.1 1 OTTHUMG00000153431.1 +35974 chr2 HAVANA gene 38535258 38536249 880.0 - 0 ENSG00000271443.1 transcribed_processed_pseudogene AC011247.3 1 OTTHUMG00000184445.1 pseudo_consens +35975 chr2 HAVANA gene 38601598 38602178 233.0 + 0 ENSG00000235586.1 antisense AC011247.2 2 OTTHUMG00000153432.1 +35976 chr2 HAVANA gene 38561978 38603586 5923.0 - 0 ENSG00000143889.15 protein_coding HNRNPLL 1 OTTHUMG00000102075.4 +35977 chr2 HAVANA gene 38668202 38671421 1086.0 - 0 ENSG00000232518.3 antisense AC074366.1 2 OTTHUMG00000153449.2 +35978 chr2 HAVANA gene 38665910 38741237 2790.0 + 0 ENSG00000143891.16 protein_coding GALM 1 OTTHUMG00000102077.4 +35979 chr2 HAVANA gene 38743599 38751494 4045.0 - 0 ENSG00000115875.18 protein_coding SRSF7 2 OTTHUMG00000102076.5 +35980 chr2 HAVANA gene 38763534 38765221 1688.0 + 0 ENSG00000227238.1 unitary_pseudogene TTC39DP 1 OTTHUMG00000153484.2 pseudo_consens,overlapping_locus +35981 chr2 HAVANA gene 38769265 38770124 530.0 + 0 ENSG00000232114.1 processed_pseudogene AC018693.2 1 OTTHUMG00000153505.1 pseudo_consens,overlapping_locus +35982 chr2 HAVANA gene 38751534 38785000 4361.0 + 0 ENSG00000152147.10 protein_coding GEMIN6 1 OTTHUMG00000128588.3 overlapping_locus +35983 chr2 HAVANA gene 38810432 38811654 1223.0 - 0 ENSG00000223922.1 processed_pseudogene ASS1P2 1 OTTHUMG00000153539.1 pseudo_consens,overlapping_locus +35984 chr2 HAVANA gene 38861720 38863133 550.0 + 0 ENSG00000225284.1 antisense AC018693.1 1 OTTHUMG00000153519.1 +35985 chr2 HAVANA gene 38797729 38875934 7985.0 - 0 ENSG00000163214.20 protein_coding DHX57 1 OTTHUMG00000102103.9 overlapping_locus +35986 chr2 ENSEMBL gene 38884560 38884666 107.0 - 0 ENSG00000207295.1 snRNA RNU6-851P 3 +35987 chr2 HAVANA gene 38875962 38929072 1364.0 + 0 ENSG00000188010.13 protein_coding MORN2 1 OTTHUMG00000128589.4 overlapping_locus +35988 chr2 ENSEMBL gene 38936876 38937158 283.0 - 0 ENSG00000265905.2 misc_RNA RN7SL96P 3 +35989 chr2 HAVANA gene 38959287 38960342 1056.0 - 0 ENSG00000269210.2 antisense AC019171.1 2 OTTHUMG00000187088.1 +35990 chr2 HAVANA gene 38889841 38975449 5529.0 + 0 ENSG00000214694.11 protein_coding ARHGEF33 1 OTTHUMG00000153540.2 overlapping_locus +35991 chr2 HAVANA gene 38992279 38993857 1254.0 - 0 ENSG00000229692.3 sense_intronic SOS1-IT1 2 OTTHUMG00000153569.3 overlapping_locus +35992 chr2 ENSEMBL gene 39082589 39082692 104.0 + 0 ENSG00000206985.1 snRNA RNU6-198P 3 +35993 chr2 HAVANA gene 39098149 39098445 297.0 - 0 ENSG00000225900.1 processed_pseudogene HSPE1P13 1 OTTHUMG00000153568.1 pseudo_consens,overlapping_locus +35994 chr2 HAVANA gene 38981396 39124345 9263.0 - 0 ENSG00000115904.12 protein_coding SOS1 1 OTTHUMG00000102109.5 overlapping_locus +35995 chr2 ENSEMBL gene 39128826 39128927 102.0 - 0 ENSG00000202309.1 misc_RNA RF00019 3 +35996 chr2 HAVANA gene 39175646 39229588 2074.0 - 0 ENSG00000205111.8 protein_coding CDKL4 1 OTTHUMG00000133574.3 +35997 chr2 ENSEMBL gene 39283657 39283791 135.0 - 0 ENSG00000252473.1 snoRNA RF00272 3 +35998 chr2 HAVANA gene 39323328 39323804 477.0 - 0 ENSG00000273035.1 sense_intronic AC007684.1 2 OTTHUMG00000185858.1 overlapping_locus +35999 chr2 HAVANA gene 39249266 39437312 6067.0 - 0 ENSG00000011566.14 protein_coding MAP4K3 2 OTTHUMG00000102127.4 ncRNA_host,overlapping_locus +36000 chr2 HAVANA gene 39436637 39665343 6741.0 + 0 ENSG00000231312.6 antisense AC007388.1 2 OTTHUMG00000152299.2 overlapping_locus +36001 chr2 HAVANA gene 39664982 39717963 2470.0 + 0 ENSG00000152154.10 protein_coding TMEM178A 2 OTTHUMG00000128591.2 overlapping_locus +36002 chr2 HAVANA gene 39736060 39779267 3823.0 - 0 ENSG00000138050.14 protein_coding THUMPD2 2 OTTHUMG00000102149.4 +36003 chr2 HAVANA gene 39929110 39929998 889.0 + 0 ENSG00000235653.1 processed_pseudogene AC007253.1 2 OTTHUMG00000152309.1 overlapping_locus +36004 chr2 HAVANA gene 39786453 40255209 8475.0 + 0 ENSG00000227028.6 antisense SLC8A1-AS1 2 OTTHUMG00000152308.5 overlapping_locus +36005 chr2 HAVANA gene 40097270 40611053 21922.0 - 0 ENSG00000183023.18 protein_coding SLC8A1 2 OTTHUMG00000102183.9 +36006 chr2 HAVANA gene 40591285 40679604 2467.0 + 0 ENSG00000285898.1 lincRNA AC007317.1 2 OTTHUMG00000192908.1 +36007 chr2 HAVANA gene 40746487 40767452 549.0 + 0 ENSG00000233128.1 lincRNA LINC01794 2 OTTHUMG00000152401.1 +36008 chr2 HAVANA gene 41143780 41157555 1271.0 + 0 ENSG00000237442.3 transcribed_processed_pseudogene HNRNPA1P57 1 OTTHUMG00000152297.3 pseudo_consens +36009 chr2 HAVANA gene 41819747 41820754 1008.0 + 0 ENSG00000236090.2 processed_pseudogene LDHAP3 1 OTTHUMG00000152304.3 pseudo_consens +36010 chr2 HAVANA gene 41850203 41850601 399.0 - 0 ENSG00000236533.1 processed_pseudogene AC009413.1 1 OTTHUMG00000152300.2 pseudo_consens +36011 chr2 ENSEMBL gene 41857271 41857372 102.0 - 0 ENSG00000207218.1 misc_RNA RF00019 3 +36012 chr2 ENSEMBL gene 41871271 41871388 118.0 + 0 ENSG00000223245.1 snRNA RNU4-63P 3 +36013 chr2 HAVANA gene 41876763 41894046 2526.0 + 0 ENSG00000214691.8 lincRNA LINC01913 1 OTTHUMG00000152301.5 +36014 chr2 HAVANA gene 41931599 41933723 898.0 - 0 ENSG00000234362.5 lincRNA LINC01914 2 OTTHUMG00000152505.2 +36015 chr2 HAVANA gene 41935368 41956806 4356.0 - 0 ENSG00000205086.7 protein_coding C2orf91 1 OTTHUMG00000152307.2 +36016 chr2 HAVANA gene 42015625 42025302 346.0 - 0 ENSG00000226398.1 antisense AC013480.1 1 OTTHUMG00000152306.2 +36017 chr2 HAVANA gene 42048020 42058528 3925.0 + 0 ENSG00000162878.12 protein_coding PKDCC 2 OTTHUMG00000152303.4 +36018 chr2 HAVANA gene 42143238 42170301 947.0 - 0 ENSG00000224875.2 antisense AC083949.1 2 OTTHUMG00000152629.2 +36019 chr2 HAVANA gene 42169350 42332548 8357.0 + 0 ENSG00000143924.18 protein_coding EML4 2 OTTHUMG00000128603.6 +36020 chr2 HAVANA gene 42333546 42425088 5605.0 - 0 ENSG00000115944.14 protein_coding COX7A2L 1 OTTHUMG00000128605.7 +36021 chr2 ENSEMBL gene 42440377 42440436 60.0 + 0 ENSG00000221300.1 snoRNA RF00612 3 +36022 chr2 HAVANA gene 42463139 42463997 859.0 - 0 ENSG00000232526.1 processed_pseudogene VDAC1P13 1 OTTHUMG00000152314.3 pseudo_consens,overlapping_locus +36023 chr2 HAVANA gene 42469817 42470266 450.0 + 0 ENSG00000236913.1 processed_pseudogene AC025750.2 1 OTTHUMG00000152313.2 pseudo_consens +36024 chr2 HAVANA gene 42442017 42494097 3824.0 - 0 ENSG00000171126.7 protein_coding KCNG3 2 OTTHUMG00000128604.3 overlapping_locus +36025 chr2 ENSEMBL gene 42511570 42511851 282.0 + 0 ENSG00000273913.1 misc_RNA RF00017 3 +36026 chr2 HAVANA gene 42532766 42533442 379.0 - 0 ENSG00000215263.2 processed_pseudogene AC025750.1 1 OTTHUMG00000152329.2 pseudo_consens +36027 chr2 HAVANA gene 42680088 42680279 192.0 - 0 ENSG00000226523.1 processed_pseudogene AC074375.1 1 OTTHUMG00000152328.2 pseudo_consens +36028 chr2 ENSEMBL gene 42712740 42712847 108.0 + 0 ENSG00000200550.1 snRNA RNU6-137P 3 +36029 chr2 HAVANA gene 42494569 42756947 10580.0 + 0 ENSG00000057935.13 protein_coding MTA3 1 OTTHUMG00000150452.5 ncRNA_host +36030 chr2 HAVANA gene 42762481 42764261 1781.0 - 0 ENSG00000162881.6 protein_coding OXER1 2 OTTHUMG00000128643.1 +36031 chr2 HAVANA gene 42767089 42792593 2726.0 - 0 ENSG00000162882.14 protein_coding HAAO 1 OTTHUMG00000152348.5 +36032 chr2 HAVANA gene 42797225 42798712 861.0 - 0 ENSG00000226491.1 processed_pseudogene FTOP1 2 OTTHUMG00000152364.2 +36033 chr2 HAVANA gene 42826322 42827617 980.0 - 0 ENSG00000232202.1 processed_pseudogene AC098824.1 1 OTTHUMG00000152363.2 pseudo_consens +36034 chr2 HAVANA gene 43001355 43006060 237.0 - 0 ENSG00000224739.2 lincRNA AC016735.1 2 OTTHUMG00000152375.3 +36035 chr2 HAVANA gene 43027853 43039547 2759.0 - 0 ENSG00000231826.5 lincRNA LINC01819 2 OTTHUMG00000152373.2 +36036 chr2 HAVANA gene 43041193 43043782 569.0 - 0 ENSG00000233978.1 lincRNA LINC02590 2 OTTHUMG00000152376.1 +36037 chr2 ENSEMBL gene 43091388 43091494 107.0 - 0 ENSG00000207087.1 snRNA RNU6-242P 3 +36038 chr2 HAVANA gene 43097746 43102691 952.0 - 0 ENSG00000230587.1 lincRNA LINC02580 1 OTTHUMG00000152374.2 +36039 chr2 HAVANA gene 43222402 43226609 3696.0 - 0 ENSG00000152518.7 protein_coding ZFP36L2 2 OTTHUMG00000128642.2 +36040 chr2 HAVANA gene 43227210 43228855 1646.0 + 0 ENSG00000279873.2 lincRNA LINC01126 2 OTTHUMG00000152397.3 +36041 chr2 HAVANA gene 43229573 43233394 398.0 + 0 ENSG00000234936.1 antisense AC010883.1 1 OTTHUMG00000152402.2 +36042 chr2 ENSEMBL gene 43408307 43408412 106.0 + 0 ENSG00000252804.1 snRNA RNU6-958P 3 +36043 chr2 ENSEMBL gene 43492032 43492313 282.0 + 0 ENSG00000264071.2 misc_RNA RN7SL531P 3 +36044 chr2 HAVANA gene 43230836 43596046 14220.0 - 0 ENSG00000115970.18 protein_coding THADA 2 OTTHUMG00000152398.10 +36045 chr2 ENSEMBL gene 43620878 43620984 107.0 - 0 ENSG00000207411.1 misc_RNA RF00019 3 +36046 chr2 HAVANA gene 43675151 43676322 1172.0 - 0 ENSG00000223658.7 protein_coding C1GALT1C1L 2 OTTHUMG00000152807.3 retrogene +36047 chr2 HAVANA gene 43680465 43681622 1158.0 - 0 ENSG00000229695.1 processed_pseudogene AC011242.1 1 OTTHUMG00000152470.2 pseudo_consens +36048 chr2 HAVANA gene 43637273 43767987 9835.0 + 0 ENSG00000152527.13 protein_coding PLEKHH2 2 OTTHUMG00000128657.7 +36049 chr2 ENSEMBL gene 43772120 43772350 231.0 - 0 ENSG00000252490.1 misc_RNA RN7SKP66 3 +36050 chr2 HAVANA gene 43774039 43810010 4618.0 + 0 ENSG00000138036.18 protein_coding DYNC2LI1 1 OTTHUMG00000128656.9 +36051 chr2 HAVANA gene 43812472 43838865 3720.0 - 0 ENSG00000138075.12 protein_coding ABCG5 1 OTTHUMG00000128758.7 +36052 chr2 HAVANA gene 43831942 43882987 10185.0 + 0 ENSG00000143921.7 protein_coding ABCG8 2 OTTHUMG00000128756.5 +36053 chr2 ENSEMBL gene 43892690 43892796 107.0 + 0 ENSG00000200924.1 snRNA RNU6-1048P 3 +36054 chr2 ENSEMBL gene 43904412 43904693 282.0 + 0 ENSG00000264047.2 misc_RNA RN7SL455P 3 +36055 chr2 HAVANA gene 43886508 43996005 9760.0 - 0 ENSG00000138095.18 protein_coding LRPPRC 1 OTTHUMG00000152782.11 +36056 chr2 HAVANA gene 44065894 44066154 261.0 - 0 ENSG00000219391.1 processed_pseudogene AC019129.1 1 OTTHUMG00000152408.2 pseudo_consens +36057 chr2 ENSEMBL gene 44154789 44154895 107.0 - 0 ENSG00000252599.1 snRNA RNU6-566P 3 +36058 chr2 HAVANA gene 44166266 44166943 678.0 + 0 ENSG00000224637.1 unprocessed_pseudogene PDSS1P2 1 OTTHUMG00000152784.1 pseudo_consens +36059 chr2 HAVANA gene 44167625 44168859 1235.0 - 0 ENSG00000273106.1 antisense AC019129.2 2 OTTHUMG00000185892.1 +36060 chr2 HAVANA gene 44167969 44244384 7103.0 + 0 ENSG00000138032.20 protein_coding PPM1B 2 OTTHUMG00000128757.18 overlapping_locus +36061 chr2 HAVANA gene 44270621 44271106 486.0 + 0 ENSG00000226972.2 processed_pseudogene RPL12P19 1 OTTHUMG00000152783.2 pseudo_consens +36062 chr2 HAVANA gene 44168851 44320310 3333.0 + 0 ENSG00000285542.1 protein_coding AC013717.1 2 OTTHUMG00000193405.2 overlapping_locus +36063 chr2 HAVANA gene 44275458 44321494 6541.0 + 0 ENSG00000138079.13 protein_coding SLC3A1 1 OTTHUMG00000128759.6 overlapping_locus +36064 chr2 HAVANA gene 44316281 44361862 8153.0 - 0 ENSG00000138078.15 protein_coding PREPL 1 OTTHUMG00000152791.7 +36065 chr2 HAVANA gene 44361950 44772592 3991.0 + 0 ENSG00000143919.14 protein_coding CAMKMT 2 OTTHUMG00000128761.4 +36066 chr2 HAVANA gene 44927914 44928396 483.0 - 0 ENSG00000278957.1 TEC AC012354.3 2 OTTHUMG00000184122.1 overlapping_locus +36067 chr2 ENSEMBL gene 44932320 44932406 87.0 + 0 ENSG00000274520.1 misc_RNA RF02246 3 +36068 chr2 ENSEMBL gene 44934055 44934271 217.0 + 0 ENSG00000277311.1 misc_RNA RF02247 3 +36069 chr2 ENSEMBL gene 44935294 44935368 75.0 + 0 ENSG00000276229.1 misc_RNA RF02248 3 +36070 chr2 ENSEMBL gene 44935585 44935908 324.0 + 0 ENSG00000277809.1 misc_RNA RF02249 3 +36071 chr2 ENSEMBL gene 44937426 44937696 271.0 + 0 ENSG00000276048.1 misc_RNA RF02250 3 +36072 chr2 ENSEMBL gene 44938833 44939028 196.0 + 0 ENSG00000274547.1 misc_RNA RF02251 3 +36073 chr2 HAVANA gene 44921077 44939199 3872.0 - 0 ENSG00000259439.2 lincRNA LINC01833 2 OTTHUMG00000172199.2 overlapping_locus +36074 chr2 ENSEMBL gene 44940045 44940245 201.0 + 0 ENSG00000276670.1 misc_RNA RF02252 3 +36075 chr2 HAVANA gene 44940154 44941873 1151.0 - 0 ENSG00000236502.1 lincRNA SIX3-AS1 2 OTTHUMG00000152423.1 +36076 chr2 HAVANA gene 44941898 44946077 2523.0 + 0 ENSG00000138083.4 protein_coding SIX3 2 OTTHUMG00000152424.2 +36077 chr2 HAVANA gene 44954664 44968762 2685.0 + 0 ENSG00000225156.2 lincRNA AC012354.1 2 OTTHUMG00000152422.2 +36078 chr2 HAVANA gene 44996413 44996873 461.0 + 0 ENSG00000231848.1 processed_pseudogene AC012354.2 1 OTTHUMG00000152426.1 pseudo_consens +36079 chr2 HAVANA gene 45005161 45009430 2205.0 - 0 ENSG00000170577.7 protein_coding SIX2 2 OTTHUMG00000152421.2 +36080 chr2 HAVANA gene 45013214 45013668 367.0 - 0 ENSG00000231156.1 lincRNA AC093702.1 2 OTTHUMG00000152444.1 +36081 chr2 HAVANA gene 45168583 45169414 553.0 + 0 ENSG00000231054.1 lincRNA AC093833.1 1 OTTHUMG00000152442.1 +36082 chr2 HAVANA gene 45164816 45323385 4335.0 - 0 ENSG00000205054.7 processed_transcript LINC01121 1 OTTHUMG00000152484.4 +36083 chr2 ENSEMBL gene 45569199 45569492 294.0 - 0 ENSG00000239396.3 misc_RNA RN7SL414P 3 +36084 chr2 HAVANA gene 45388680 45612165 5045.0 - 0 ENSG00000068784.12 protein_coding SRBD1 2 OTTHUMG00000128814.4 ncRNA_host +36085 chr2 HAVANA gene 45674701 45675476 374.0 - 0 ENSG00000228481.1 antisense U51244.1 1 OTTHUMG00000151675.1 +36086 chr2 HAVANA gene 46003942 46004309 368.0 - 0 ENSG00000233829.1 processed_pseudogene AC017078.1 1 OTTHUMG00000151720.1 pseudo_consens +36087 chr2 HAVANA gene 46078015 46078828 464.0 - 0 ENSG00000232696.1 antisense AC017006.2 1 OTTHUMG00000151722.1 +36088 chr2 HAVANA gene 46166789 46167978 364.0 - 0 ENSG00000231336.1 antisense AC017006.1 2 OTTHUMG00000151721.1 +36089 chr2 HAVANA gene 45651345 46187990 9908.0 + 0 ENSG00000171132.13 protein_coding PRKCE 1 OTTHUMG00000128817.8 +36090 chr2 HAVANA gene 46256860 46257177 318.0 - 0 ENSG00000233335.1 processed_pseudogene AC016696.1 1 OTTHUMG00000152813.1 pseudo_consens +36091 chr2 ENSEMBL gene 46266690 46266971 282.0 + 0 ENSG00000278764.1 misc_RNA RF00017 3 +36092 chr2 HAVANA gene 46293667 46386703 7302.0 + 0 ENSG00000116016.13 protein_coding EPAS1 1 OTTHUMG00000128818.24 +36093 chr2 HAVANA gene 46392297 46394167 570.0 - 0 ENSG00000228100.1 lincRNA LINC01820 1 OTTHUMG00000153138.1 +36094 chr2 HAVANA gene 46429190 46441833 1483.0 + 0 ENSG00000187600.14 lincRNA LINC02583 2 OTTHUMG00000153137.5 overlapping_locus +36095 chr2 ENSEMBL gene 46448224 46448511 288.0 - 0 ENSG00000241791.3 misc_RNA RN7SL817P 3 +36096 chr2 HAVANA gene 46429195 46484424 545.0 + 0 ENSG00000284608.1 processed_transcript AC016912.1 2 OTTHUMG00000192350.2 overlapping_locus +36097 chr2 HAVANA gene 46479565 46484425 680.0 + 0 ENSG00000284701.1 protein_coding TMEM247 2 OTTHUMG00000192351.1 overlapping_locus +36098 chr2 HAVANA gene 46499731 46501278 399.0 + 0 ENSG00000253515.1 antisense AC018682.2 2 OTTHUMG00000164841.1 +36099 chr2 HAVANA gene 46490750 46542557 5283.0 - 0 ENSG00000250565.6 protein_coding ATP6V1E2 2 OTTHUMG00000128819.2 retrogene +36100 chr2 HAVANA gene 46568256 46580238 1519.0 - 0 ENSG00000250116.2 antisense AC018682.1 2 OTTHUMG00000164842.1 +36101 chr2 HAVANA gene 46541806 46583121 4619.0 + 0 ENSG00000119729.11 protein_coding RHOQ 2 OTTHUMG00000150653.2 +36102 chr2 HAVANA gene 46580937 46617119 4978.0 - 0 ENSG00000151665.12 protein_coding PIGF 2 OTTHUMG00000128816.5 +36103 chr2 HAVANA gene 46616416 46625742 2561.0 + 0 ENSG00000119878.5 protein_coding CRIPT 2 OTTHUMG00000128815.2 +36104 chr2 HAVANA gene 46668870 46670778 1909.0 + 0 ENSG00000279254.1 TEC AC020604.1 2 OTTHUMG00000175848.1 +36105 chr2 HAVANA gene 46698952 46780245 7598.0 + 0 ENSG00000171150.8 protein_coding SOCS5 2 OTTHUMG00000128852.3 overlapping_locus +36106 chr2 HAVANA gene 46698940 46822804 3360.0 + 0 ENSG00000222005.9 sense_overlapping LINC01118 1 OTTHUMG00000153080.3 overlapping_locus +36107 chr2 HAVANA gene 46852020 46853496 652.0 - 0 ENSG00000226548.1 lincRNA AC016722.1 1 OTTHUMG00000153084.1 +36108 chr2 HAVANA gene 46816697 46859007 2830.0 + 0 ENSG00000239332.5 lincRNA LINC01119 2 OTTHUMG00000153081.3 overlapping_locus +36109 chr2 HAVANA gene 46899275 46908678 1835.0 + 0 ENSG00000228925.1 antisense AC016722.2 2 OTTHUMG00000153091.2 +36110 chr2 HAVANA gene 46901870 46941855 5994.0 - 0 ENSG00000180398.12 protein_coding MCFD2 1 OTTHUMG00000153100.5 +36111 chr2 HAVANA gene 46956615 46956888 274.0 - 0 ENSG00000272814.1 antisense AC093732.2 2 OTTHUMG00000185909.1 +36112 chr2 HAVANA gene 47035279 47040524 504.0 - 0 ENSG00000233845.1 antisense AC093732.1 1 OTTHUMG00000153135.1 +36113 chr2 HAVANA gene 47067822 47071204 860.0 + 0 ENSG00000225187.1 antisense AC073283.1 2 OTTHUMG00000153134.1 overlapping_locus +36114 chr2 HAVANA gene 46916157 47076137 6949.0 + 0 ENSG00000068724.15 protein_coding TTC7A 1 OTTHUMG00000153121.4 overlapping_locus +36115 chr2 HAVANA gene 47045538 47155378 3273.0 - 0 ENSG00000239605.10 protein_coding STPG4 2 OTTHUMG00000128851.2 overlapping_locus +36116 chr2 HAVANA gene 47065941 47176511 1331.0 - 0 ENSG00000273269.3 protein_coding AC073283.3 2 OTTHUMG00000185936.1 overlapping_locus +36117 chr2 HAVANA gene 47160082 47176601 6466.0 - 0 ENSG00000143933.16 protein_coding CALM2 2 OTTHUMG00000128850.8 overlapping_locus +36118 chr2 HAVANA gene 47225794 47239225 677.0 + 0 ENSG00000226087.1 lincRNA AC073283.2 1 OTTHUMG00000151712.2 +36119 chr2 HAVANA gene 47335315 47335514 200.0 + 0 ENSG00000236824.2 scRNA BCYRN1 2 OTTHUMG00000151778.2 +36120 chr2 HAVANA gene 47192405 47345074 3552.0 - 0 ENSG00000234690.6 lincRNA AC106869.1 1 OTTHUMG00000151698.6 +36121 chr2 ENSEMBL gene 47359505 47359777 273.0 - 0 ENSG00000222685.1 misc_RNA RN7SKP119 3 +36122 chr2 ENSEMBL gene 47377675 47377770 96.0 + 0 ENSG00000207923.1 miRNA MIR559 3 +36123 chr2 ENSEMBL gene 47383160 47383421 262.0 + 0 ENSG00000277396.1 misc_RNA RF00017 3 +36124 chr2 HAVANA gene 47345158 47387601 2519.0 + 0 ENSG00000119888.10 protein_coding EPCAM 1 OTTHUMG00000128853.9 ncRNA_host +36125 chr2 HAVANA gene 47527008 47535199 1295.0 + 0 ENSG00000235760.4 antisense HCG2040054 2 OTTHUMG00000151664.6 overlapping_locus +36126 chr2 HAVANA gene 47516581 47570939 6685.0 - 0 ENSG00000184261.4 protein_coding KCNK12 2 OTTHUMG00000129131.3 +36127 chr2 HAVANA gene 47402969 47663146 13777.0 + 0 ENSG00000095002.14 protein_coding MSH2 1 OTTHUMG00000128861.9 overlapping_locus +36128 chr2 HAVANA gene 47690716 47691246 531.0 - 0 ENSG00000230979.3 processed_pseudogene AC079250.1 2 OTTHUMG00000151670.1 +36129 chr2 HAVANA gene 47705468 47705979 395.0 + 0 ENSG00000224443.1 processed_pseudogene AC006509.2 1 OTTHUMG00000151672.2 pseudo_consens,overlapping_locus +36130 chr2 HAVANA gene 47731402 47732035 634.0 - 0 ENSG00000224058.2 processed_pseudogene AC006509.1 1 OTTHUMG00000151828.2 pseudo_consens +36131 chr2 ENSEMBL gene 47781379 47781465 87.0 + 0 ENSG00000283502.1 snRNA RF00026 3 +36132 chr2 HAVANA gene 47797826 47798091 266.0 - 0 ENSG00000235369.1 processed_pseudogene RPL36AP15 1 OTTHUMG00000151838.1 pseudo_consens,overlapping_locus +36133 chr2 HAVANA gene 47695530 47810101 10993.0 + 0 ENSG00000116062.14 protein_coding MSH6 2 OTTHUMG00000129129.11 ncRNA_host,overlapping_locus +36134 chr2 HAVANA gene 47883455 47883909 455.0 + 0 ENSG00000236549.1 processed_pseudogene RPS27AP7 1 OTTHUMG00000151835.1 pseudo_consens +36135 chr2 HAVANA gene 47789316 47905793 7074.0 - 0 ENSG00000138081.20 protein_coding FBXO11 2 OTTHUMG00000129130.6 overlapping_locus +36136 chr2 HAVANA gene 47905678 47907810 856.0 + 0 ENSG00000233230.1 antisense AC079807.1 1 OTTHUMG00000151834.2 +36137 chr2 HAVANA gene 47939738 47940218 481.0 - 0 ENSG00000226473.2 processed_pseudogene PPIAP62 1 OTTHUMG00000151738.1 pseudo_consens +36138 chr2 HAVANA gene 47989625 47990526 902.0 + 0 ENSG00000275423.1 processed_pseudogene AC092650.2 2 OTTHUMG00000187526.1 +36139 chr2 ENSEMBL gene 48217575 48217899 325.0 + 0 ENSG00000201010.1 misc_RNA RN7SKP224 3 +36140 chr2 HAVANA gene 47941696 48240983 2881.0 - 0 ENSG00000230773.7 lincRNA AC092650.1 2 OTTHUMG00000151756.6 +36141 chr2 ENSEMBL gene 48340687 48340826 140.0 - 0 ENSG00000251889.1 snRNA RNU4-49P 3 +36142 chr2 HAVANA gene 48314637 48379294 5481.0 + 0 ENSG00000170802.15 protein_coding FOXN2 2 OTTHUMG00000129168.5 +36143 chr2 HAVANA gene 48440043 48440597 555.0 - 0 ENSG00000272663.1 lincRNA AC093635.1 2 OTTHUMG00000185920.2 +36144 chr2 ENSEMBL gene 48501922 48502024 103.0 - 0 ENSG00000202227.1 snRNA RNU6-282P 3 +36145 chr2 HAVANA gene 48440598 48515391 3995.0 + 0 ENSG00000162869.15 protein_coding PPP1R21 2 OTTHUMG00000129167.11 +36146 chr2 HAVANA gene 48529383 48598513 7709.0 + 0 ENSG00000243244.6 protein_coding STON1 2 OTTHUMG00000129169.7 overlapping_locus +36147 chr2 HAVANA gene 48632856 48633353 498.0 - 0 ENSG00000239995.2 transcribed_processed_pseudogene TPT1P11 2 OTTHUMG00000151767.2 overlapping_locus +36148 chr2 HAVANA gene 48617798 48733148 2054.0 + 0 ENSG00000242441.7 protein_coding GTF2A1L 2 OTTHUMG00000152038.16 overlapping_locus +36149 chr2 HAVANA gene 48632291 48755724 2103.0 - 0 ENSG00000279956.1 protein_coding AC073082.1 2 OTTHUMG00000189455.1 overlapping_locus +36150 chr2 HAVANA gene 48686775 48755730 4999.0 - 0 ENSG00000138039.14 protein_coding LHCGR 1 OTTHUMG00000129257.10 overlapping_locus +36151 chr2 HAVANA gene 48529925 48776517 4294.0 + 0 ENSG00000068781.21 protein_coding STON1-GTF2A1L 1 OTTHUMG00000152037.6 overlapping_locus +36152 chr2 HAVANA gene 48780602 48780895 294.0 + 0 ENSG00000232285.1 processed_pseudogene ELOBP3 1 OTTHUMG00000152104.1 pseudo_consens +36153 chr2 HAVANA gene 48915267 48916530 1264.0 - 0 ENSG00000214602.3 processed_pseudogene CTBP2P5 1 OTTHUMG00000151768.1 pseudo_consens +36154 chr2 ENSEMBL gene 49059603 49059658 56.0 + 0 ENSG00000212036.3 miRNA MIR548BA 3 +36155 chr2 HAVANA gene 48962157 49154537 3170.0 - 0 ENSG00000170820.11 protein_coding FSHR 2 OTTHUMG00000129259.4 +36156 chr2 ENSEMBL gene 49233794 49233899 106.0 - 0 ENSG00000206915.1 snRNA RNU6-439P 3 +36157 chr2 HAVANA gene 48809340 49419013 2698.0 + 0 ENSG00000282890.1 lincRNA AC009975.1 2 OTTHUMG00000191579.1 ncRNA_host +36158 chr2 HAVANA gene 49202126 49451896 2096.0 - 0 ENSG00000282998.1 lincRNA AC009975.2 2 OTTHUMG00000191580.1 ncRNA_host +36159 chr2 HAVANA gene 49563398 49595122 673.0 + 0 ENSG00000282828.1 lincRNA AC009971.1 2 OTTHUMG00000191581.1 +36160 chr2 HAVANA gene 49878623 49879363 741.0 + 0 ENSG00000234253.1 processed_pseudogene RPL7P13 1 OTTHUMG00000151779.1 pseudo_consens +36161 chr2 ENSEMBL gene 49888868 49888986 119.0 - 0 ENSG00000212580.1 snoRNA RF00072 3 +36162 chr2 HAVANA gene 50324643 50345598 1217.0 + 0 ENSG00000285548.1 antisense AC068725.1 2 OTTHUMG00000193261.1 +36163 chr2 HAVANA gene 50588690 50589415 726.0 - 0 ENSG00000230327.1 processed_pseudogene MTCO1P42 2 OTTHUMG00000151798.2 overlapping_locus +36164 chr2 HAVANA gene 50620963 50632993 895.0 + 0 ENSG00000283058.1 antisense AC009234.1 2 OTTHUMG00000191582.1 +36165 chr2 ENSEMBL gene 50696172 50696262 91.0 - 0 ENSG00000216191.1 miRNA MIR8485 3 +36166 chr2 HAVANA gene 50829442 50829678 237.0 - 0 ENSG00000238165.1 processed_pseudogene AC007560.1 1 OTTHUMG00000151799.1 pseudo_consens,overlapping_locus +36167 chr2 HAVANA gene 49918505 51225575 24320.0 - 0 ENSG00000179915.22 protein_coding NRXN1 1 OTTHUMG00000129263.22 ncRNA_host +36168 chr2 HAVANA gene 51511058 51511483 426.0 + 0 ENSG00000224344.1 processed_pseudogene KNOP1P3 1 OTTHUMG00000102135.2 pseudo_consens,overlapping_locus +36169 chr2 HAVANA gene 51775258 51775402 145.0 - 0 ENSG00000223710.1 unprocessed_pseudogene CRYGGP 2 OTTHUMG00000058411.1 +36170 chr2 HAVANA gene 51925692 51925833 142.0 - 0 ENSG00000230840.1 processed_pseudogene AC097463.2 2 OTTHUMG00000128421.1 +36171 chr2 HAVANA gene 51926882 51927362 481.0 - 0 ENSG00000226366.1 processed_pseudogene AC097463.1 1 OTTHUMG00000058410.2 pseudo_consens +36172 chr2 HAVANA gene 52071355 52077197 417.0 + 0 ENSG00000236538.1 processed_pseudogene ZNF863P 2 OTTHUMG00000151841.3 overlapping_locus +36173 chr2 ENSEMBL gene 52297995 52298096 102.0 + 0 ENSG00000202195.1 misc_RNA RF00019 3 +36174 chr2 HAVANA gene 52373118 52390012 604.0 + 0 ENSG00000225444.1 lincRNA LINC01867 2 OTTHUMG00000151845.1 overlapping_locus +36175 chr2 HAVANA gene 51032601 52407917 3939.0 + 0 ENSG00000231918.1 lincRNA AC007402.1 2 OTTHUMG00000144189.3 ncRNA_host,overlapping_locus +36176 chr2 HAVANA gene 52474073 52474411 339.0 - 0 ENSG00000225842.1 processed_pseudogene AC139712.2 1 OTTHUMG00000152475.1 pseudo_consens +36177 chr2 HAVANA gene 52494688 52500752 639.0 - 0 ENSG00000236837.1 lincRNA AC139712.3 2 OTTHUMG00000152267.1 +36178 chr2 HAVANA gene 52570648 52572522 1875.0 + 0 ENSG00000204993.3 processed_pseudogene AC139712.1 1 OTTHUMG00000151839.1 pseudo_consens +36179 chr2 HAVANA gene 52629743 52630078 320.0 + 0 ENSG00000233083.1 processed_pseudogene FTH1P6 1 OTTHUMG00000151801.2 pseudo_consens +36180 chr2 ENSEMBL gene 52702522 52702615 94.0 - 0 ENSG00000264975.1 miRNA MIR4431 3 +36181 chr2 HAVANA gene 52864235 52866631 333.0 + 0 ENSG00000232604.1 lincRNA AC010967.2 2 OTTHUMG00000152414.1 +36182 chr2 HAVANA gene 52883243 52883455 213.0 + 0 ENSG00000232668.1 processed_pseudogene AC010967.3 2 OTTHUMG00000151802.1 +36183 chr2 HAVANA gene 52722677 52910020 489.0 - 0 ENSG00000228033.5 lincRNA AC010967.1 2 OTTHUMG00000152413.1 +36184 chr2 ENSEMBL gene 53470447 53470629 183.0 - 0 ENSG00000251942.1 scaRNA RF00424 3 +36185 chr2 HAVANA gene 53486144 53486280 137.0 - 0 ENSG00000223897.1 processed_pseudogene AC069157.1 1 OTTHUMG00000151800.2 pseudo_consens +36186 chr2 ENSEMBL gene 53570374 53570480 107.0 - 0 ENSG00000207456.1 snRNA RNU6-997P 3 +36187 chr2 HAVANA gene 53767792 53775196 1321.0 + 0 ENSG00000143942.4 protein_coding CHAC2 2 OTTHUMG00000151824.1 +36188 chr2 HAVANA gene 53532672 53787610 6299.0 - 0 ENSG00000115239.21 protein_coding ASB3 2 OTTHUMG00000184778.1 ncRNA_host,overlapping_locus +36189 chr2 HAVANA gene 53787044 53818819 2592.0 + 0 ENSG00000068912.13 protein_coding ERLEC1 1 OTTHUMG00000129281.4 +36190 chr2 ENSEMBL gene 53849122 53849205 84.0 - 0 ENSG00000265452.1 miRNA MIR3682 3 +36191 chr2 HAVANA gene 53852913 53859989 2115.0 - 0 ENSG00000119737.5 protein_coding GPR75 2 OTTHUMG00000129280.2 overlapping_locus +36192 chr2 HAVANA gene 53670293 53860160 2340.0 - 0 ENSG00000270898.5 protein_coding GPR75-ASB3 2 OTTHUMG00000129279.12 ncRNA_host,overlapping_locus +36193 chr2 HAVANA gene 53864067 53970840 10241.0 - 0 ENSG00000068878.14 protein_coding PSME4 2 OTTHUMG00000151852.5 +36194 chr2 HAVANA gene 54029552 54030682 412.0 - 0 ENSG00000235937.1 processed_pseudogene AC008280.1 1 OTTHUMG00000151882.1 pseudo_consens +36195 chr2 HAVANA gene 54051334 54051760 427.0 + 0 ENSG00000233266.1 processed_pseudogene HMGB1P31 1 OTTHUMG00000152407.1 pseudo_consens,overlapping_locus +36196 chr2 HAVANA gene 54079974 54080280 307.0 - 0 ENSG00000241114.1 processed_pseudogene AC008280.2 1 OTTHUMG00000152406.1 pseudo_consens +36197 chr2 HAVANA gene 54082554 54085066 732.0 + 0 ENSG00000272156.1 lincRNA AC008280.3 2 OTTHUMG00000185585.1 overlapping_locus +36198 chr2 ENSEMBL gene 54166944 54167007 64.0 - 0 ENSG00000252934.1 snRNA RNU7-172P 3 +36199 chr2 HAVANA gene 54253184 54256272 3089.0 - 0 ENSG00000178021.10 protein_coding TSPYL6 2 OTTHUMG00000151823.3 retrogene +36200 chr2 HAVANA gene 53970838 54305300 4964.0 + 0 ENSG00000170634.12 protein_coding ACYP2 1 OTTHUMG00000129287.7 overlapping_locus +36201 chr2 HAVANA gene 54330034 54383742 2716.0 + 0 ENSG00000177994.15 protein_coding C2orf73 1 OTTHUMG00000151826.7 +36202 chr2 HAVANA gene 54529343 54529801 459.0 + 0 ENSG00000237887.1 processed_pseudogene RPL23AP32 1 OTTHUMG00000152036.2 pseudo_consens,overlapping_locus +36203 chr2 HAVANA gene 54516048 54540697 536.0 - 0 ENSG00000228108.1 antisense AC092839.1 1 OTTHUMG00000152417.2 +36204 chr2 HAVANA gene 54545368 54546677 377.0 - 0 ENSG00000234943.2 antisense AC092839.2 2 OTTHUMG00000152418.2 +36205 chr2 HAVANA gene 54456285 54671445 18504.0 + 0 ENSG00000115306.15 protein_coding SPTBN1 2 OTTHUMG00000133746.6 overlapping_locus +36206 chr2 HAVANA gene 54661011 54680045 1236.0 - 0 ENSG00000238018.2 antisense AC093110.1 2 OTTHUMG00000152506.2 +36207 chr2 HAVANA gene 54747103 54748404 397.0 - 0 ENSG00000231334.1 antisense AC104781.1 2 OTTHUMG00000152469.1 +36208 chr2 HAVANA gene 54768492 54801540 562.0 - 0 ENSG00000285519.1 antisense AC104781.2 2 OTTHUMG00000193310.2 +36209 chr2 ENSEMBL gene 54850289 54850352 64.0 + 0 ENSG00000252507.1 snRNA RNU7-81P 3 +36210 chr2 HAVANA gene 54723499 54972025 14426.0 + 0 ENSG00000214595.11 protein_coding EML6 1 OTTHUMG00000152035.10 ncRNA_host +36211 chr2 ENSEMBL gene 55014418 55014521 104.0 - 0 ENSG00000200086.1 snRNA RNU6-433P 3 +36212 chr2 HAVANA gene 54972187 55112621 6644.0 - 0 ENSG00000115310.17 protein_coding RTN4 2 OTTHUMG00000129337.10 ncRNA_host +36213 chr2 HAVANA gene 55214387 55216126 916.0 - 0 ENSG00000203327.2 antisense AC012358.1 1 OTTHUMG00000152548.1 overlapping_locus +36214 chr2 HAVANA gene 55224280 55225908 1434.0 + 0 ENSG00000227799.1 processed_pseudogene AC012358.2 2 OTTHUMG00000151917.2 +36215 chr2 HAVANA gene 55174791 55232563 4398.0 - 0 ENSG00000162994.15 protein_coding CLHC1 1 OTTHUMG00000151918.8 overlapping_locus +36216 chr2 HAVANA gene 55231903 55235853 3130.0 + 0 ENSG00000143947.13 protein_coding RPS27A 2 OTTHUMG00000151919.18 +36217 chr2 HAVANA gene 55236595 55269347 3374.0 - 0 ENSG00000085760.14 protein_coding MTIF2 1 OTTHUMG00000129338.23 +36218 chr2 HAVANA gene 55282319 55284522 2204.0 + 0 ENSG00000162997.15 transcribed_unitary_pseudogene PRORSD1P 1 OTTHUMG00000176755.1 +36219 chr2 ENSEMBL gene 55286018 55286128 111.0 + 0 ENSG00000206964.1 misc_RNA RF00019 3 +36220 chr2 HAVANA gene 55282350 55346049 4741.0 + 0 ENSG00000240401.8 antisense AC012358.3 1 OTTHUMG00000152491.7 ncRNA_host +36221 chr2 HAVANA gene 55287842 55419895 33942.0 - 0 ENSG00000115355.16 protein_coding CCDC88A 1 OTTHUMG00000151915.18 +36222 chr2 HAVANA gene 55435156 55435622 467.0 - 0 ENSG00000233594.2 processed_pseudogene BTF3P5 1 OTTHUMG00000152119.2 pseudo_consens +36223 chr2 ENSEMBL gene 55451004 55451099 96.0 - 0 ENSG00000238619.1 snRNA RNU6-775P 3 +36224 chr2 ENSEMBL gene 55456106 55456204 99.0 - 0 ENSG00000238493.1 snRNA RNU6-221P 3 +36225 chr2 ENSEMBL gene 55499950 55500055 106.0 + 0 ENSG00000239189.1 snRNA RNU6-634P 3 +36226 chr2 HAVANA gene 55519604 55545879 3505.0 + 0 ENSG00000163001.11 protein_coding CFAP36 2 OTTHUMG00000129339.7 +36227 chr2 ENSEMBL gene 55565703 55565850 148.0 + 0 ENSG00000212175.1 snoRNA RF00586 3 +36228 chr2 HAVANA gene 55617909 55618373 465.0 + 0 ENSG00000272606.1 antisense AC015982.1 2 OTTHUMG00000185926.1 +36229 chr2 HAVANA gene 55547292 55618880 8217.0 - 0 ENSG00000275052.4 protein_coding PPP4R3B 2 OTTHUMG00000129336.7 +36230 chr2 HAVANA gene 55634265 55693910 5134.0 - 0 ENSG00000138035.14 protein_coding PNPT1 2 OTTHUMG00000129335.7 +36231 chr2 HAVANA gene 55865967 55924139 3962.0 - 0 ENSG00000115380.19 protein_coding EFEMP1 2 OTTHUMG00000129343.6 +36232 chr2 ENSEMBL gene 55951654 55952014 361.0 - 0 ENSG00000202344.1 misc_RNA RN7SKP208 3 +36233 chr2 ENSEMBL gene 55982967 55983076 110.0 - 0 ENSG00000207548.3 miRNA MIR217 3 +36234 chr2 ENSEMBL gene 55988950 55989059 110.0 - 0 ENSG00000207798.1 miRNA MIR216A 3 +36235 chr2 ENSEMBL gene 56000714 56000795 82.0 - 0 ENSG00000211520.2 miRNA MIR216B 3 +36236 chr2 HAVANA gene 55963191 56047326 900.0 - 0 ENSG00000226702.1 lincRNA MIR217HG 2 OTTHUMG00000152029.1 ncRNA_host +36237 chr2 HAVANA gene 56077417 56090382 712.0 - 0 ENSG00000229805.1 lincRNA LINC01813 2 OTTHUMG00000152028.1 +36238 chr2 HAVANA gene 55952158 56181652 1275.0 + 0 ENSG00000272180.1 lincRNA AC011306.1 2 OTTHUMG00000185572.1 overlapping_locus +36239 chr2 HAVANA gene 56173534 56185770 3713.0 - 0 ENSG00000233251.7 antisense AC007743.1 2 OTTHUMG00000152032.2 +36240 chr2 ENSEMBL gene 56235217 56235330 114.0 - 0 ENSG00000199395.1 rRNA_pseudogene RNA5SP93 3 +36241 chr2 HAVANA gene 56147630 56386171 2289.0 + 0 ENSG00000271894.1 processed_transcript AC007744.1 2 OTTHUMG00000185573.1 overlapping_locus +36242 chr2 HAVANA gene 56184123 56386173 3982.0 + 0 ENSG00000055813.5 protein_coding CCDC85A 2 OTTHUMG00000152033.3 overlapping_locus +36243 chr2 HAVANA gene 56750300 56750563 264.0 + 0 ENSG00000231570.1 processed_pseudogene PPIAP63 1 OTTHUMG00000152045.1 pseudo_consens +36244 chr2 HAVANA gene 57048350 57049336 987.0 - 0 ENSG00000271115.1 processed_pseudogene AC010738.1 1 OTTHUMG00000184447.1 pseudo_consens +36245 chr2 HAVANA gene 57289648 57380132 1977.0 - 0 ENSG00000285755.1 lincRNA AC132153.1 2 OTTHUMG00000192979.1 +36246 chr2 HAVANA gene 57429548 57430693 379.0 - 0 ENSG00000270569.1 processed_pseudogene AC068276.1 1 OTTHUMG00000184449.1 pseudo_consens +36247 chr2 ENSEMBL gene 57544535 57544599 65.0 + 0 ENSG00000212168.1 snoRNA RF00592 3 +36248 chr2 HAVANA gene 57755428 57766052 1701.0 + 0 ENSG00000271615.1 transcribed_processed_pseudogene ACTG1P22 1 OTTHUMG00000184337.1 pseudo_consens +36249 chr2 HAVANA gene 57907629 58159920 3531.0 + 0 ENSG00000028116.17 protein_coding VRK2 1 OTTHUMG00000129348.8 +36250 chr2 HAVANA gene 58159243 58241372 2412.0 - 0 ENSG00000115392.11 protein_coding FANCL 1 OTTHUMG00000129349.6 +36251 chr2 HAVANA gene 58241349 58241686 338.0 + 0 ENSG00000273063.1 antisense AC007250.1 2 OTTHUMG00000185927.1 +36252 chr2 HAVANA gene 58251440 58252525 1086.0 + 0 ENSG00000233426.3 processed_pseudogene EIF3FP3 2 OTTHUMG00000152112.1 +36253 chr2 HAVANA gene 58275877 58296548 813.0 + 0 ENSG00000225226.1 lincRNA LINC01795 1 OTTHUMG00000152120.1 +36254 chr2 HAVANA gene 58460292 58462032 1741.0 - 0 ENSG00000231043.3 processed_pseudogene AC007238.1 1 OTTHUMG00000152125.1 pseudo_consens +36255 chr2 HAVANA gene 58427799 59063766 5536.0 + 0 ENSG00000233723.8 lincRNA LINC01122 1 OTTHUMG00000152613.6 overlapping_locus +36256 chr2 HAVANA gene 59014354 59277688 1650.0 + 0 ENSG00000285673.1 lincRNA AC007092.1 2 OTTHUMG00000193412.1 overlapping_locus +36257 chr2 HAVANA gene 59217708 59279400 2036.0 + 0 ENSG00000222030.1 lincRNA LINC01793 2 OTTHUMG00000152615.2 overlapping_locus +36258 chr2 HAVANA gene 59434552 59442261 1180.0 + 0 ENSG00000231815.2 lincRNA AC007179.1 1 OTTHUMG00000152616.3 +36259 chr2 HAVANA gene 59514890 59515124 235.0 + 0 ENSG00000270447.1 processed_pseudogene AC007179.3 1 OTTHUMG00000184336.1 pseudo_consens +36260 chr2 ENSEMBL gene 59647621 59647723 103.0 + 0 ENSG00000200101.1 snRNA RNU6-508P 3 +36261 chr2 ENSEMBL gene 59694762 59694869 108.0 + 0 ENSG00000252726.1 rRNA_pseudogene RNA5SP94 3 +36262 chr2 HAVANA gene 59238714 59733396 2437.0 - 0 ENSG00000233891.7 lincRNA AC007179.2 1 OTTHUMG00000152614.6 overlapping_locus +36263 chr2 HAVANA gene 60057601 60071108 1233.0 + 0 ENSG00000285611.1 lincRNA AC007132.1 2 OTTHUMG00000193206.2 +36264 chr2 HAVANA gene 59218680 60100200 478.0 - 0 ENSG00000271955.2 lincRNA AC007100.1 2 OTTHUMG00000185541.3 overlapping_locus +36265 chr2 ENSEMBL gene 60384605 60384763 159.0 + 0 ENSG00000200807.1 snRNA RNU1-32P 3 +36266 chr2 ENSEMBL gene 60387362 60387445 84.0 - 0 ENSG00000266078.1 miRNA MIR4432 3 +36267 chr2 HAVANA gene 60336446 60439828 8996.0 - 0 ENSG00000228590.2 lincRNA MIR4432HG 2 OTTHUMG00000152618.2 ncRNA_host +36268 chr2 HAVANA gene 60495686 60499964 432.0 + 0 ENSG00000233953.1 antisense AC009970.1 2 OTTHUMG00000152622.1 +36269 chr2 HAVANA gene 60450520 60555154 25422.0 - 0 ENSG00000119866.21 protein_coding BCL11A 1 OTTHUMG00000129420.11 +36270 chr2 ENSEMBL gene 60640705 60641002 298.0 + 0 ENSG00000242158.3 misc_RNA RN7SL361P 3 +36271 chr2 HAVANA gene 60682873 60683244 372.0 - 0 ENSG00000271134.1 processed_pseudogene AC012498.2 1 OTTHUMG00000184451.1 pseudo_consens +36272 chr2 HAVANA gene 60711484 60711920 437.0 + 0 ENSG00000213495.3 processed_pseudogene AC012498.1 1 OTTHUMG00000157061.1 pseudo_consens +36273 chr2 ENSEMBL gene 60719640 60719741 102.0 + 0 ENSG00000252718.1 snRNA RNU6-612P 3 +36274 chr2 HAVANA gene 60734895 60735715 821.0 - 0 ENSG00000271707.1 processed_pseudogene ATP1B3P1 1 OTTHUMG00000184452.1 pseudo_consens +36275 chr2 HAVANA gene 60756230 60802085 8501.0 + 0 ENSG00000115421.12 protein_coding PAPOLG 2 OTTHUMG00000129419.5 +36276 chr2 ENSEMBL gene 60831664 60831929 266.0 - 0 ENSG00000241524.3 misc_RNA RN7SL632P 3 +36277 chr2 HAVANA gene 60852260 60852743 484.0 + 0 ENSG00000237024.1 processed_pseudogene RPL21P33 1 OTTHUMG00000152167.1 pseudo_consens +36278 chr2 HAVANA gene 60825132 60881314 2029.0 - 0 ENSG00000228414.6 lincRNA LINC01185 2 OTTHUMG00000152126.3 ncRNA_host +36279 chr2 ENSEMBL gene 60911303 60911442 140.0 + 0 ENSG00000201076.1 snRNA RNU4-51P 3 +36280 chr2 HAVANA gene 60881521 60931610 11255.0 + 0 ENSG00000162924.14 protein_coding REL 2 OTTHUMG00000129418.4 ncRNA_host,overlapping_locus +36281 chr2 HAVANA gene 60925909 60931610 5702.0 + 0 ENSG00000267520.2 3prime_overlapping_ncRNA AC010733.2 2 OTTHUMG00000179927.2 overlapping_locus +36282 chr2 HAVANA gene 60936819 60938049 1231.0 - 0 ENSG00000237522.1 processed_pseudogene NONOP2 1 OTTHUMG00000155384.1 pseudo_consens +36283 chr2 HAVANA gene 60938204 60938604 401.0 - 0 ENSG00000232713.2 processed_pseudogene AC010733.1 1 OTTHUMG00000152127.4 pseudo_consens +36284 chr2 ENSEMBL gene 60998752 60998888 137.0 + 0 ENSG00000222251.1 rRNA_pseudogene RNA5SP95 3 +36285 chr2 HAVANA gene 60940222 61018259 7651.0 - 0 ENSG00000162927.13 protein_coding PUS10 2 OTTHUMG00000129423.8 +36286 chr2 HAVANA gene 61017225 61051990 5910.0 + 0 ENSG00000162928.8 protein_coding PEX13 1 OTTHUMG00000129422.7 +36287 chr2 HAVANA gene 61065871 61138034 7992.0 + 0 ENSG00000162929.13 protein_coding KIAA1841 1 OTTHUMG00000187089.1 +36288 chr2 HAVANA gene 61141592 61144969 3109.0 - 0 ENSG00000212978.6 processed_transcript AC016747.1 1 OTTHUMG00000152156.5 +36289 chr2 HAVANA gene 61151433 61162105 884.0 - 0 ENSG00000271889.1 lincRNA AC016747.2 2 OTTHUMG00000185543.1 +36290 chr2 HAVANA gene 61115787 61164825 1383.0 + 0 ENSG00000274769.1 processed_transcript AC016747.4 2 OTTHUMG00000129421.9 overlapping_locus +36291 chr2 HAVANA gene 61145068 61164829 1515.0 + 0 ENSG00000237651.6 protein_coding C2orf74 2 OTTHUMG00000187090.3 +36292 chr2 HAVANA gene 61177418 61191203 8382.0 + 0 ENSG00000173209.23 transcribed_unitary_pseudogene AHSA2P 2 OTTHUMG00000129437.11 +36293 chr2 HAVANA gene 61199979 61200769 791.0 + 0 ENSG00000273302.1 sense_intronic AC016747.3 2 OTTHUMG00000185935.1 +36294 chr2 HAVANA gene 61249780 61250621 397.0 + 0 ENSG00000271146.1 processed_pseudogene AC018889.1 1 OTTHUMG00000184334.1 pseudo_consens +36295 chr2 HAVANA gene 61416887 61417197 311.0 - 0 ENSG00000234624.2 processed_pseudogene AC016894.1 2 OTTHUMG00000152266.2 overlapping_locus +36296 chr2 ENSEMBL gene 61417244 61417378 135.0 - 0 ENSG00000206937.1 snoRNA SNORA70B 3 +36297 chr2 HAVANA gene 61187463 61470769 18125.0 - 0 ENSG00000115464.14 protein_coding USP34 2 OTTHUMG00000152265.9 ncRNA_host,overlapping_locus +36298 chr2 HAVANA gene 61471188 61484130 1963.0 + 0 ENSG00000270820.5 antisense AC016727.1 2 OTTHUMG00000185251.1 +36299 chr2 HAVANA gene 61527340 61529160 1266.0 + 0 ENSG00000285857.1 antisense AC016727.3 2 OTTHUMG00000193010.1 +36300 chr2 HAVANA gene 61477849 61538626 11708.0 - 0 ENSG00000082898.16 protein_coding XPO1 2 OTTHUMG00000152316.23 +36301 chr2 HAVANA gene 61575774 61576394 621.0 + 0 ENSG00000271243.1 processed_pseudogene AC016727.2 1 OTTHUMG00000184510.1 pseudo_consens +36302 chr2 HAVANA gene 61589498 61589663 166.0 - 0 ENSG00000226884.1 processed_pseudogene RPS29P10 1 OTTHUMG00000152362.2 pseudo_consens +36303 chr2 ENSEMBL gene 61605616 61605722 107.0 + 0 ENSG00000206973.1 snRNA RNU6-1145P 3 +36304 chr2 HAVANA gene 61710076 61710978 609.0 - 0 ENSG00000213486.3 processed_pseudogene AC108039.1 1 OTTHUMG00000152379.1 pseudo_consens +36305 chr2 HAVANA gene 61803143 61803388 246.0 + 0 ENSG00000227361.1 processed_pseudogene RPS24P7 1 OTTHUMG00000153265.1 pseudo_consens +36306 chr2 HAVANA gene 61820208 61820566 359.0 + 0 ENSG00000229831.2 processed_pseudogene AC108039.2 1 OTTHUMG00000153264.1 pseudo_consens +36307 chr2 HAVANA gene 61824854 61854143 5252.0 - 0 ENSG00000170264.12 protein_coding FAM161A 2 OTTHUMG00000152165.7 +36308 chr2 HAVANA gene 61856695 61857055 361.0 + 0 ENSG00000230702.1 processed_pseudogene AC107081.1 1 OTTHUMG00000157062.1 pseudo_consens +36309 chr2 HAVANA gene 61858137 61860298 2034.0 + 0 ENSG00000277498.1 unprocessed_pseudogene AC107081.3 1 OTTHUMG00000187528.1 pseudo_consens +36310 chr2 HAVANA gene 61868432 61886082 802.0 + 0 ENSG00000236498.1 antisense AC107081.2 2 OTTHUMG00000152650.1 +36311 chr2 HAVANA gene 61868089 61888804 2830.0 - 0 ENSG00000115484.14 protein_coding CCT4 2 OTTHUMG00000152166.4 +36312 chr2 ENSEMBL gene 61928634 61928704 71.0 - 0 ENSG00000278523.1 misc_RNA RF00019 3 +36313 chr2 HAVANA gene 62069447 62146881 1836.0 - 0 ENSG00000229839.6 antisense AC018462.1 2 OTTHUMG00000152512.3 +36314 chr2 HAVANA gene 62146413 62147153 741.0 + 0 ENSG00000242735.1 processed_pseudogene RPSAP26 2 OTTHUMG00000152513.1 overlapping_locus +36315 chr2 HAVANA gene 61888724 62147247 2392.0 + 0 ENSG00000173163.10 protein_coding COMMD1 2 OTTHUMG00000129445.3 overlapping_locus +36316 chr2 HAVANA gene 62168862 62171163 395.0 + 0 ENSG00000271657.1 processed_pseudogene AC018462.2 1 OTTHUMG00000184329.1 pseudo_consens +36317 chr2 ENSEMBL gene 62205826 62205917 92.0 + 0 ENSG00000266097.1 miRNA MIR5192 3 +36318 chr2 HAVANA gene 62196113 62224731 2861.0 + 0 ENSG00000170340.10 protein_coding B3GNT2 2 OTTHUMG00000129444.2 ncRNA_host +36319 chr2 ENSEMBL gene 62262387 62262671 285.0 - 0 ENSG00000239958.3 misc_RNA RN7SL51P 3 +36320 chr2 HAVANA gene 62348948 62350739 636.0 - 0 ENSG00000270335.1 processed_pseudogene AC093159.2 1 OTTHUMG00000184492.1 pseudo_consens +36321 chr2 HAVANA gene 62463127 62464070 424.0 + 0 ENSG00000228541.1 lincRNA AC093159.1 2 OTTHUMG00000152523.1 +36322 chr2 ENSEMBL gene 62491178 62491468 291.0 + 0 ENSG00000241625.3 misc_RNA RN7SL18P 3 +36323 chr2 HAVANA gene 62507545 62507823 279.0 - 0 ENSG00000233702.1 processed_pseudogene AC107083.1 1 OTTHUMG00000152515.1 pseudo_consens,overlapping_locus +36324 chr2 HAVANA gene 62500221 62511894 2982.0 - 0 ENSG00000186889.9 protein_coding TMEM17 2 OTTHUMG00000129455.3 overlapping_locus +36325 chr2 HAVANA gene 62532583 62533059 477.0 - 0 ENSG00000229503.1 processed_pseudogene AC092155.2 1 OTTHUMG00000152517.2 pseudo_consens +36326 chr2 HAVANA gene 62552463 62553434 972.0 - 0 ENSG00000232144.1 processed_pseudogene PSAT1P2 1 OTTHUMG00000152522.1 pseudo_consens +36327 chr2 HAVANA gene 62561058 62561423 366.0 - 0 ENSG00000230595.1 processed_pseudogene RSL24D1P2 1 OTTHUMG00000152521.1 pseudo_consens +36328 chr2 HAVANA gene 62590255 62662654 1281.0 - 0 ENSG00000226622.5 antisense AC092155.1 1 OTTHUMG00000152520.1 +36329 chr2 ENSEMBL gene 62726636 62726740 105.0 - 0 ENSG00000252436.1 misc_RNA RF00019 3 +36330 chr2 HAVANA gene 62826064 62858438 251.0 - 0 ENSG00000226605.1 antisense AC092567.1 2 OTTHUMG00000152544.1 +36331 chr2 HAVANA gene 62939916 62940282 367.0 + 0 ENSG00000237162.1 processed_pseudogene AC007098.2 1 OTTHUMG00000157069.1 pseudo_consens,overlapping_locus +36332 chr2 HAVANA gene 62673851 63046487 8219.0 + 0 ENSG00000115504.14 protein_coding EHBP1 2 OTTHUMG00000129453.7 overlapping_locus +36333 chr2 HAVANA gene 62957326 63048640 2675.0 - 0 ENSG00000231609.6 antisense AC007098.1 2 OTTHUMG00000152553.3 +36334 chr2 HAVANA gene 63050057 63057836 4833.0 + 0 ENSG00000115507.9 protein_coding OTX1 1 OTTHUMG00000129454.3 +36335 chr2 HAVANA gene 63083008 63087322 1352.0 + 0 ENSG00000270437.1 processed_pseudogene AC009501.2 1 OTTHUMG00000184327.1 pseudo_consens +36336 chr2 HAVANA gene 63108118 63108429 312.0 - 0 ENSG00000232403.1 processed_pseudogene AC009501.1 1 OTTHUMG00000157070.1 pseudo_consens +36337 chr2 HAVANA gene 63117851 63119542 1692.0 - 0 ENSG00000242412.1 transcribed_processed_pseudogene DBIL5P2 2 OTTHUMG00000152565.1 +36338 chr2 ENSEMBL gene 63168600 63168847 248.0 + 0 ENSG00000283636.1 misc_RNA RF00017 3 +36339 chr2 HAVANA gene 63232453 63233577 1125.0 - 0 ENSG00000233716.1 processed_pseudogene AC074367.1 1 OTTHUMG00000152607.1 pseudo_consens,overlapping_locus +36340 chr2 HAVANA gene 63517892 63519268 1377.0 - 0 ENSG00000279485.1 TEC AC016734.2 2 OTTHUMG00000186570.1 overlapping_locus +36341 chr2 HAVANA gene 63588609 63607197 4990.0 + 0 ENSG00000014641.17 protein_coding MDH1 1 OTTHUMG00000129512.12 +36342 chr2 HAVANA gene 63622178 63622831 654.0 - 0 ENSG00000228305.2 processed_pseudogene AC016734.1 2 OTTHUMG00000152582.1 overlapping_locus +36343 chr2 HAVANA gene 63642455 63644038 1584.0 - 0 ENSG00000229920.2 transcribed_processed_pseudogene RPS4XP5 1 OTTHUMG00000152611.2 pseudo_consens,overlapping_locus +36344 chr2 HAVANA gene 63684305 63684710 406.0 + 0 ENSG00000234488.1 processed_pseudogene AC096664.2 1 OTTHUMG00000152612.1 pseudo_consens +36345 chr2 HAVANA gene 63717122 63717899 778.0 + 0 ENSG00000228872.2 processed_pseudogene AC096664.1 1 OTTHUMG00000152610.1 pseudo_consens +36346 chr2 HAVANA gene 63751697 63752630 934.0 - 0 ENSG00000229221.1 processed_pseudogene HNRNPA1P66 1 OTTHUMG00000152609.1 pseudo_consens,overlapping_locus +36347 chr2 HAVANA gene 63121383 63827843 11776.0 - 0 ENSG00000143951.15 protein_coding WDPCP 1 OTTHUMG00000152566.9 overlapping_locus +36348 chr2 ENSEMBL gene 63883249 63883391 143.0 - 0 ENSG00000251775.1 snoRNA RF01293 3 +36349 chr2 HAVANA gene 63840940 63891562 6501.0 + 0 ENSG00000169764.15 protein_coding UGP2 1 OTTHUMG00000129513.8 +36350 chr2 HAVANA gene 63892146 64019072 5091.0 - 0 ENSG00000143952.19 protein_coding VPS54 1 OTTHUMG00000152627.2 +36351 chr2 HAVANA gene 64086353 64088246 560.0 - 0 ENSG00000228079.2 lincRNA AC012368.2 2 OTTHUMG00000152631.2 +36352 chr2 HAVANA gene 64092652 64144454 4125.0 - 0 ENSG00000197329.11 protein_coding PELI1 2 OTTHUMG00000129511.3 +36353 chr2 HAVANA gene 64185078 64205485 3307.0 - 0 ENSG00000230923.2 lincRNA LINC00309 2 OTTHUMG00000152633.3 +36354 chr2 HAVANA gene 64208498 64208716 219.0 - 0 ENSG00000270354.1 processed_pseudogene AC012368.3 1 OTTHUMG00000184494.1 pseudo_consens +36355 chr2 HAVANA gene 64143239 64252859 2453.0 + 0 ENSG00000225889.7 antisense AC012368.1 2 OTTHUMG00000152632.5 +36356 chr2 HAVANA gene 64330486 64332131 289.0 - 0 ENSG00000238012.1 lincRNA AC114752.1 1 OTTHUMG00000152671.1 +36357 chr2 ENSEMBL gene 64340759 64340839 81.0 + 0 ENSG00000283222.1 miRNA MIR4433A 3 +36358 chr2 ENSEMBL gene 64340747 64340848 102.0 - 0 ENSG00000264297.2 miRNA MIR4433B 3 +36359 chr2 HAVANA gene 64338067 64341647 404.0 - 0 ENSG00000238201.1 lincRNA AC114752.2 2 OTTHUMG00000152672.1 ncRNA_host +36360 chr2 HAVANA gene 64347193 64347741 549.0 - 0 ENSG00000236148.5 processed_pseudogene RPL23AP37 1 OTTHUMG00000152669.1 pseudo_consens +36361 chr2 HAVANA gene 64450096 64450524 429.0 + 0 ENSG00000237217.1 processed_pseudogene AC008074.1 2 OTTHUMG00000152675.1 +36362 chr2 HAVANA gene 64395220 64453897 895.0 - 0 ENSG00000223935.2 bidirectional_promoter_lncRNA LGALSL-DT 2 OTTHUMG00000152670.2 +36363 chr2 HAVANA gene 64453969 64461381 4003.0 + 0 ENSG00000119862.12 protein_coding LGALSL 1 OTTHUMG00000129541.6 +36364 chr2 HAVANA gene 64486353 64500904 572.0 + 0 ENSG00000223863.1 lincRNA LINC01805 2 OTTHUMG00000152676.1 +36365 chr2 HAVANA gene 64522187 64524093 1907.0 - 0 ENSG00000260101.1 lincRNA AC008074.2 2 OTTHUMG00000175896.1 +36366 chr2 ENSEMBL gene 64525513 64525565 53.0 + 0 ENSG00000283204.1 miRNA MIR4434 3 +36367 chr2 ENSEMBL gene 64578892 64578997 106.0 + 0 ENSG00000252414.1 snRNA RNU6-100P 3 +36368 chr2 HAVANA gene 64524305 64593005 5767.0 + 0 ENSG00000119844.15 protein_coding AFTPH 2 OTTHUMG00000129539.6 ncRNA_host +36369 chr2 HAVANA gene 64606975 64616482 1929.0 + 0 ENSG00000233694.5 lincRNA LINC02579 2 OTTHUMG00000152679.1 +36370 chr2 HAVANA gene 64644612 64646698 627.0 + 0 ENSG00000226756.1 lincRNA AC007365.1 1 OTTHUMG00000152702.1 +36371 chr2 HAVANA gene 64665607 64666064 458.0 + 0 ENSG00000227791.3 processed_pseudogene AC007365.2 1 OTTHUMG00000152701.2 pseudo_consens +36372 chr2 HAVANA gene 64631621 64751005 6274.0 - 0 ENSG00000179833.4 protein_coding SERTAD2 2 OTTHUMG00000152678.3 +36373 chr2 ENSEMBL gene 64817378 64817675 298.0 + 0 ENSG00000275588.1 misc_RNA RN7SL341P 3 +36374 chr2 ENSEMBL gene 64834056 64834157 102.0 - 0 ENSG00000199964.1 misc_RNA RF00019 3 +36375 chr2 HAVANA gene 64846130 64863626 1977.0 - 0 ENSG00000234572.1 lincRNA LINC01800 2 OTTHUMG00000152703.1 +36376 chr2 HAVANA gene 64901840 64905137 2928.0 - 0 ENSG00000237638.1 lincRNA LINC02245 2 OTTHUMG00000152704.1 +36377 chr2 ENSEMBL gene 64906863 64907138 276.0 - 0 ENSG00000244534.3 misc_RNA RN7SL211P 3 +36378 chr2 HAVANA gene 64960053 64960634 582.0 - 0 ENSG00000227394.1 processed_pseudogene AC007386.1 1 OTTHUMG00000152700.1 pseudo_consens +36379 chr2 ENSEMBL gene 64994746 64994860 115.0 + 0 ENSG00000252892.1 snRNA RNU6-548P 3 +36380 chr2 HAVANA gene 64988477 65023865 6939.0 + 0 ENSG00000115902.10 protein_coding SLC1A4 1 OTTHUMG00000129537.3 ncRNA_host +36381 chr2 HAVANA gene 65030727 65053017 1133.0 + 0 ENSG00000232613.6 antisense LINC02576 1 OTTHUMG00000152699.3 +36382 chr2 HAVANA gene 65056366 65087004 8623.0 + 0 ENSG00000011523.13 protein_coding CEP68 1 OTTHUMG00000129538.3 +36383 chr2 HAVANA gene 65070696 65130331 3312.0 - 0 ENSG00000138069.17 protein_coding RAB1A 2 OTTHUMG00000152725.3 +36384 chr2 ENSEMBL gene 65158662 65158860 199.0 + 0 ENSG00000272025.1 snoRNA RF00090 3 +36385 chr2 HAVANA gene 65205108 65205988 881.0 + 0 ENSG00000172974.11 processed_pseudogene AC007318.1 2 OTTHUMG00000152724.2 +36386 chr2 HAVANA gene 65203502 65227605 2124.0 - 0 ENSG00000273763.2 transcribed_processed_pseudogene AC007318.2 2 OTTHUMG00000187530.3 +36387 chr2 HAVANA gene 65227753 65271253 4347.0 + 0 ENSG00000138071.13 protein_coding ACTR2 2 OTTHUMG00000129540.3 +36388 chr2 HAVANA gene 65373700 65380685 530.0 - 0 ENSG00000232693.2 sense_intronic AC012370.1 2 OTTHUMG00000152757.2 overlapping_locus +36389 chr2 HAVANA gene 65310851 65432637 5154.0 - 0 ENSG00000198369.9 protein_coding SPRED2 1 OTTHUMG00000152737.5 overlapping_locus +36390 chr2 HAVANA gene 65439888 65456571 2522.0 - 0 ENSG00000234255.8 lincRNA AC012370.2 2 OTTHUMG00000152758.6 +36391 chr2 HAVANA gene 65500993 65502138 793.0 - 0 ENSG00000237979.1 processed_pseudogene AC007389.4 1 OTTHUMG00000152798.1 pseudo_consens +36392 chr2 HAVANA gene 65511771 65512076 306.0 - 0 ENSG00000223739.1 processed_pseudogene AC007389.2 1 OTTHUMG00000152795.1 pseudo_consens +36393 chr2 ENSEMBL gene 65545401 65545696 296.0 - 0 ENSG00000243029.3 misc_RNA RN7SL635P 3 +36394 chr2 ENSEMBL gene 65555432 65555534 103.0 - 0 ENSG00000251900.1 misc_RNA VTRNA2-2P 3 +36395 chr2 HAVANA gene 65623272 65628424 744.0 + 0 ENSG00000281920.1 lincRNA AC007389.5 2 OTTHUMG00000189703.1 +36396 chr2 HAVANA gene 65589566 65640177 1656.0 - 0 ENSG00000235725.1 lincRNA AC007389.3 2 OTTHUMG00000152797.1 +36397 chr2 HAVANA gene 65666695 65667737 1043.0 + 0 ENSG00000214533.3 processed_pseudogene KRT18P33 1 OTTHUMG00000152796.1 pseudo_consens,overlapping_locus +36398 chr2 HAVANA gene 65790039 65793533 3495.0 + 0 ENSG00000280257.1 TEC AC007741.1 2 OTTHUMG00000185631.1 overlapping_locus +36399 chr2 HAVANA gene 65436711 66084639 3761.0 + 0 ENSG00000204929.12 processed_transcript AC007389.1 2 OTTHUMG00000152768.6 +36400 chr2 HAVANA gene 66235377 66236213 366.0 - 0 ENSG00000227293.1 lincRNA AC118345.1 2 OTTHUMG00000152909.1 +36401 chr2 HAVANA gene 66327349 66328984 1228.0 + 0 ENSG00000225815.2 lincRNA AC092669.1 2 OTTHUMG00000152908.1 overlapping_locus +36402 chr2 ENSEMBL gene 66358249 66358328 80.0 - 0 ENSG00000264525.1 miRNA MIR4778 3 +36403 chr2 HAVANA gene 66383306 66392450 1679.0 + 0 ENSG00000232164.1 lincRNA LINC01873 2 OTTHUMG00000152809.2 +36404 chr2 HAVANA gene 66426735 66433470 707.0 - 0 ENSG00000226819.1 antisense MEIS1-AS3 2 OTTHUMG00000152832.2 +36405 chr2 HAVANA gene 66439088 66441836 1029.0 - 0 ENSG00000230749.4 antisense MEIS1-AS2 1 OTTHUMG00000152831.1 overlapping_locus +36406 chr2 HAVANA gene 66433452 66573869 10934.0 + 0 ENSG00000143995.19 protein_coding MEIS1 1 OTTHUMG00000150714.13 +36407 chr2 HAVANA gene 66697125 66703227 765.0 - 0 ENSG00000237179.5 lincRNA LINC01797 2 OTTHUMG00000152839.1 +36408 chr2 HAVANA gene 66574030 66730157 1607.0 + 0 ENSG00000232046.6 lincRNA LINC01798 2 OTTHUMG00000152838.2 +36409 chr2 HAVANA gene 66820684 66822570 1565.0 - 0 ENSG00000224071.1 processed_pseudogene AC009474.1 1 OTTHUMG00000152855.1 pseudo_consens +36410 chr2 HAVANA gene 66881087 66881222 136.0 - 0 ENSG00000230355.1 processed_pseudogene AC009474.2 2 OTTHUMG00000152854.1 +36411 chr2 HAVANA gene 66921510 66922457 397.0 - 0 ENSG00000232688.1 lincRNA LINC01628 1 OTTHUMG00000152852.1 +36412 chr2 HAVANA gene 66904436 66971462 824.0 + 0 ENSG00000230525.5 lincRNA LINC01799 2 OTTHUMG00000152853.1 +36413 chr2 HAVANA gene 67040546 67041966 567.0 + 0 ENSG00000223859.1 lincRNA AC007403.1 2 OTTHUMG00000152857.1 +36414 chr2 HAVANA gene 67123357 67215319 2788.0 - 0 ENSG00000236780.5 lincRNA LINC01829 2 OTTHUMG00000152856.2 +36415 chr2 HAVANA gene 67086446 67311439 6480.0 + 0 ENSG00000235885.7 lincRNA LINC01828 2 OTTHUMG00000152865.5 overlapping_locus +36416 chr2 HAVANA gene 67324627 67325304 574.0 + 0 ENSG00000236605.1 lincRNA AC023115.1 2 OTTHUMG00000152879.1 +36417 chr2 HAVANA gene 67397319 67412089 7480.0 + 0 ENSG00000143971.8 protein_coding ETAA1 2 OTTHUMG00000129545.3 +36418 chr2 HAVANA gene 67562067 67574044 1008.0 + 0 ENSG00000224173.1 lincRNA AC007422.1 2 OTTHUMG00000152486.3 +36419 chr2 HAVANA gene 67565604 67684077 167.0 - 0 ENSG00000235495.1 lincRNA AC007422.2 2 OTTHUMG00000152562.1 +36420 chr2 HAVANA gene 67796054 67825562 725.0 - 0 ENSG00000237013.1 lincRNA LINC01812 2 OTTHUMG00000152485.1 +36421 chr2 HAVANA gene 68023694 68024766 939.0 - 0 ENSG00000235968.1 processed_pseudogene AC079112.1 1 OTTHUMG00000152560.1 pseudo_consens +36422 chr2 HAVANA gene 68041130 68110948 3581.0 - 0 ENSG00000197223.11 protein_coding C1D 1 OTTHUMG00000129564.7 +36423 chr2 HAVANA gene 68117026 68117200 175.0 + 0 ENSG00000284932.1 unprocessed_pseudogene AC017083.4 2 OTTHUMG00000192420.1 +36424 chr2 HAVANA gene 68125265 68125747 483.0 + 0 ENSG00000236259.1 processed_pseudogene PPIAP64 1 OTTHUMG00000152569.1 pseudo_consens +36425 chr2 HAVANA gene 68122936 68157560 4079.0 - 0 ENSG00000243667.6 protein_coding WDR92 1 OTTHUMG00000152561.4 overlapping_locus +36426 chr2 HAVANA gene 68157844 68176238 2674.0 + 0 ENSG00000115946.7 protein_coding PNO1 2 OTTHUMG00000129563.2 +36427 chr2 HAVANA gene 68179833 68180532 700.0 + 0 ENSG00000273275.1 antisense AC017083.2 2 OTTHUMG00000185954.1 +36428 chr2 HAVANA gene 68252870 68253848 979.0 + 0 ENSG00000273064.1 antisense AC017083.1 2 OTTHUMG00000185957.2 +36429 chr2 HAVANA gene 68178857 68256237 3363.0 - 0 ENSG00000221823.10 protein_coding PPP3R1 2 OTTHUMG00000129561.8 overlapping_locus +36430 chr2 HAVANA gene 68131238 68261230 2306.0 - 0 ENSG00000273398.6 protein_coding AC017083.3 2 OTTHUMG00000185937.1 overlapping_locus +36431 chr2 HAVANA gene 68284171 68320051 3548.0 - 0 ENSG00000119865.8 protein_coding CNRIP1 1 OTTHUMG00000129565.4 +36432 chr2 HAVANA gene 68361214 68365584 1416.0 - 0 ENSG00000203395.2 antisense AC015969.1 2 OTTHUMG00000152574.1 +36433 chr2 HAVANA gene 68365173 68397453 3314.0 + 0 ENSG00000115956.9 protein_coding PLEK 2 OTTHUMG00000129562.4 +36434 chr2 HAVANA gene 68445710 68449174 1800.0 - 0 ENSG00000229462.1 unprocessed_pseudogene AC127383.1 1 OTTHUMG00000152584.2 pseudo_consens +36435 chr2 HAVANA gene 68459419 68467258 5666.0 - 0 ENSG00000204923.3 protein_coding FBXO48 2 OTTHUMG00000152585.2 +36436 chr2 HAVANA gene 68528241 68529452 1212.0 - 0 ENSG00000214525.4 processed_pseudogene AC130709.1 2 OTTHUMG00000152620.1 +36437 chr2 HAVANA gene 68467561 68655862 7135.0 + 0 ENSG00000169621.9 protein_coding APLF 2 OTTHUMG00000129566.6 overlapping_locus +36438 chr2 HAVANA gene 68643589 68658247 4273.0 + 0 ENSG00000169618.6 protein_coding PROKR1 2 OTTHUMG00000129567.3 overlapping_locus +36439 chr2 HAVANA gene 68679601 68826833 5452.0 + 0 ENSG00000163219.11 protein_coding ARHGAP25 1 OTTHUMG00000152621.5 +36440 chr2 HAVANA gene 68832816 68837192 1017.0 - 0 ENSG00000228329.1 lincRNA LINC01890 1 OTTHUMG00000152624.1 +36441 chr2 HAVANA gene 68832044 68837724 683.0 + 0 ENSG00000237576.1 antisense LINC01888 2 OTTHUMG00000152623.1 +36442 chr2 HAVANA gene 68865481 68871517 1584.0 - 0 ENSG00000163217.1 protein_coding BMP10 2 OTTHUMG00000129573.1 +36443 chr2 HAVANA gene 68921248 68926834 546.0 + 0 ENSG00000283586.1 polymorphic_pseudogene GKN3P 2 OTTHUMG00000191776.1 +36444 chr2 HAVANA gene 68945232 68952970 1653.0 - 0 ENSG00000183607.9 protein_coding GKN2 2 OTTHUMG00000152655.2 +36445 chr2 HAVANA gene 68974573 68980974 1149.0 + 0 ENSG00000169605.5 protein_coding GKN1 2 OTTHUMG00000129574.2 +36446 chr2 ENSEMBL gene 69103682 69103755 74.0 + 0 ENSG00000266649.1 miRNA MIR3126 3 +36447 chr2 ENSEMBL gene 69181897 69182003 107.0 - 0 ENSG00000251850.1 rRNA_pseudogene RNA5SP96 3 +36448 chr2 ENSEMBL gene 69182877 69182983 107.0 + 0 ENSG00000199460.2 snRNA RNU6-1216P 3 +36449 chr2 HAVANA gene 69013178 69249327 8185.0 + 0 ENSG00000169604.19 protein_coding ANTXR1 1 OTTHUMG00000129575.7 ncRNA_host +36450 chr2 HAVANA gene 69251818 69252364 547.0 - 0 ENSG00000271597.1 processed_pseudogene AC112230.1 1 OTTHUMG00000184496.1 pseudo_consens +36451 chr2 ENSEMBL gene 69334600 69334692 93.0 + 0 ENSG00000252250.1 misc_RNA RF00019 3 +36452 chr2 HAVANA gene 69319769 69387254 8866.0 - 0 ENSG00000198380.12 protein_coding GFPT1 2 OTTHUMG00000152666.4 +36453 chr2 HAVANA gene 69395750 69437628 2197.0 - 0 ENSG00000169599.12 protein_coding NFU1 2 OTTHUMG00000152668.6 +36454 chr2 ENSEMBL gene 69516751 69517046 296.0 + 0 ENSG00000244236.3 misc_RNA RN7SL604P 3 +36455 chr2 ENSEMBL gene 69520043 69520174 132.0 - 0 ENSG00000207016.1 snoRNA SNORA36C 3 +36456 chr2 HAVANA gene 69594741 69595058 318.0 - 0 ENSG00000232228.1 processed_pseudogene AC092431.2 1 OTTHUMG00000157071.1 pseudo_consens,overlapping_locus +36457 chr2 HAVANA gene 69597353 69598951 975.0 + 0 ENSG00000229948.2 processed_pseudogene B3GALNT1P1 1 OTTHUMG00000152687.2 pseudo_consens +36458 chr2 HAVANA gene 69457997 69674349 23608.0 - 0 ENSG00000115977.18 protein_coding AAK1 1 OTTHUMG00000129648.9 ncRNA_host,overlapping_locus +36459 chr2 HAVANA gene 69700192 69713847 420.0 - 0 ENSG00000231024.1 lincRNA AC092431.1 2 OTTHUMG00000152688.1 +36460 chr2 HAVANA gene 69644425 69827100 11048.0 + 0 ENSG00000196975.15 protein_coding ANXA4 2 OTTHUMG00000129649.5 +36461 chr2 HAVANA gene 69844509 69844933 425.0 - 0 ENSG00000275381.1 processed_pseudogene AC019206.1 2 OTTHUMG00000187532.1 +36462 chr2 HAVANA gene 69873565 69873819 255.0 - 0 ENSG00000270723.1 processed_pseudogene RPL23AP92 1 OTTHUMG00000184498.1 pseudo_consens +36463 chr2 HAVANA gene 69829642 69881396 4922.0 + 0 ENSG00000087338.4 protein_coding GMCL1 2 OTTHUMG00000129643.3 +36464 chr2 HAVANA gene 69893560 69905575 2275.0 + 0 ENSG00000124380.10 protein_coding SNRNP27 2 OTTHUMG00000152689.2 overlapping_locus +36465 chr2 HAVANA gene 69897688 69942945 6351.0 + 0 ENSG00000059728.10 protein_coding MXD1 1 OTTHUMG00000129646.4 overlapping_locus +36466 chr2 HAVANA gene 69960089 69962265 2177.0 - 0 ENSG00000244617.2 protein_coding ASPRV1 2 OTTHUMG00000129647.5 overlapping_locus +36467 chr2 ENSEMBL gene 70075014 70075272 259.0 - 0 ENSG00000263669.2 misc_RNA RN7SL470P 3 +36468 chr2 HAVANA gene 70087454 70089203 1750.0 + 0 ENSG00000169564.6 protein_coding PCBP1 2 OTTHUMG00000129645.1 retrogene +36469 chr2 HAVANA gene 70089721 70096100 448.0 + 0 ENSG00000233060.1 lincRNA AC016700.3 2 OTTHUMG00000153127.1 +36470 chr2 HAVANA gene 70102551 70102862 312.0 + 0 ENSG00000225392.1 processed_pseudogene AC016700.1 2 OTTHUMG00000153126.2 +36471 chr2 HAVANA gene 69962263 70103220 19619.0 - 0 ENSG00000179818.13 processed_transcript PCBP1-AS1 2 OTTHUMG00000153728.20 ncRNA_host,overlapping_locus +36472 chr2 HAVANA gene 70124036 70125317 662.0 - 0 ENSG00000231327.1 lincRNA LINC01816 1 OTTHUMG00000153133.1 +36473 chr2 HAVANA gene 70149880 70248615 3630.0 - 0 ENSG00000115998.7 protein_coding C2orf42 1 OTTHUMG00000129642.8 overlapping_locus +36474 chr2 HAVANA gene 70209444 70248660 6607.0 - 0 ENSG00000116001.15 protein_coding TIA1 2 OTTHUMG00000129644.14 overlapping_locus +36475 chr2 ENSEMBL gene 70252918 70253005 88.0 - 0 ENSG00000221238.1 miRNA MIR1285-2 3 +36476 chr2 HAVANA gene 70253855 70254010 156.0 - 0 ENSG00000231414.1 processed_pseudogene AC016700.2 1 OTTHUMG00000153547.2 pseudo_consens +36477 chr2 HAVANA gene 70257386 70281191 5870.0 + 0 ENSG00000116005.11 protein_coding PCYOX1 1 OTTHUMG00000129671.21 +36478 chr2 HAVANA gene 70281362 70293771 1795.0 - 0 ENSG00000143977.13 protein_coding SNRPG 1 OTTHUMG00000129670.4 +36479 chr2 HAVANA gene 70301451 70302072 287.0 + 0 ENSG00000233849.1 antisense AC022201.2 2 OTTHUMG00000154180.1 +36480 chr2 HAVANA gene 70295975 70302090 3086.0 - 0 ENSG00000035141.7 protein_coding FAM136A 1 OTTHUMG00000129668.3 +36481 chr2 HAVANA gene 70353010 70355915 1860.0 + 0 ENSG00000235289.1 processed_pseudogene BRD7P6 1 OTTHUMG00000153163.1 pseudo_consens +36482 chr2 HAVANA gene 70402934 70422678 577.0 + 0 ENSG00000229229.1 antisense AC022201.1 2 OTTHUMG00000153164.1 +36483 chr2 HAVANA gene 70467385 70468495 436.0 - 0 ENSG00000224606.1 sense_intronic TGFA-IT1 2 OTTHUMG00000153490.1 overlapping_locus +36484 chr2 HAVANA gene 70447280 70554193 4963.0 - 0 ENSG00000163235.15 protein_coding TGFA 2 OTTHUMG00000129669.39 overlapping_locus +36485 chr2 HAVANA gene 70687142 70691824 434.0 + 0 ENSG00000235035.1 antisense AC005234.1 1 OTTHUMG00000153445.2 +36486 chr2 HAVANA gene 70607618 70768225 12673.0 - 0 ENSG00000075340.22 protein_coding ADD2 1 OTTHUMG00000129710.14 +36487 chr2 HAVANA gene 70777310 70790643 722.0 - 0 ENSG00000183733.6 protein_coding FIGLA 2 OTTHUMG00000153440.1 +36488 chr2 HAVANA gene 70803157 70803426 270.0 + 0 ENSG00000228034.1 processed_pseudogene HMGN2P21 2 OTTHUMG00000154079.2 +36489 chr2 HAVANA gene 70810798 70811474 677.0 - 0 ENSG00000231386.1 processed_pseudogene AC007395.1 1 OTTHUMG00000153611.3 pseudo_consens,overlapping_locus +36490 chr2 HAVANA gene 70808643 70820600 2475.0 - 0 ENSG00000152672.7 protein_coding CLEC4F 1 OTTHUMG00000129713.4 overlapping_locus +36491 chr2 HAVANA gene 70830214 70835822 1869.0 - 0 ENSG00000116031.8 protein_coding CD207 2 OTTHUMG00000153176.6 +36492 chr2 HAVANA gene 70887871 70889959 625.0 + 0 ENSG00000237751.2 lincRNA LINC01143 2 OTTHUMG00000153230.2 +36493 chr2 ENSEMBL gene 70900155 70900351 197.0 + 0 ENSG00000277764.1 misc_RNA RF02272 3 +36494 chr2 HAVANA gene 70941817 70948610 1139.0 - 0 ENSG00000239322.1 antisense ATP6V1B1-AS1 1 OTTHUMG00000153727.2 overlapping_locus +36495 chr2 HAVANA gene 70955899 70956234 336.0 - 0 ENSG00000226186.1 processed_pseudogene ELOCP21 1 OTTHUMG00000153748.2 pseudo_consens,overlapping_locus +36496 chr2 HAVANA gene 70900590 70965373 2961.0 + 0 ENSG00000116035.3 protein_coding VAX2 2 OTTHUMG00000129714.2 overlapping_locus +36497 chr2 HAVANA gene 70935868 70965431 2688.0 + 0 ENSG00000116039.12 protein_coding ATP6V1B1 2 OTTHUMG00000129711.11 overlapping_locus +36498 chr2 ENSEMBL gene 70965584 70965867 284.0 + 0 ENSG00000241159.3 misc_RNA RN7SL160P 3 +36499 chr2 HAVANA gene 70978380 70985499 2526.0 + 0 ENSG00000144031.11 protein_coding ANKRD53 1 OTTHUMG00000129712.6 +36500 chr2 HAVANA gene 70985938 70994945 4260.0 - 0 ENSG00000144043.11 protein_coding TEX261 2 OTTHUMG00000170601.1 overlapping_locus +36501 chr2 HAVANA gene 70939318 70995336 4451.0 - 0 ENSG00000258881.6 protein_coding AC007040.2 2 OTTHUMG00000129708.6 overlapping_locus +36502 chr2 HAVANA gene 70994510 71002754 477.0 + 0 ENSG00000228384.4 antisense AC007040.1 1 OTTHUMG00000153238.3 +36503 chr2 HAVANA gene 71024127 71029893 1198.0 + 0 ENSG00000205847.6 transcribed_unprocessed_pseudogene OR7E91P 1 OTTHUMG00000154170.3 pseudo_consens +36504 chr2 HAVANA gene 71037685 71038703 1019.0 + 0 ENSG00000234485.5 unprocessed_pseudogene OR7E46P 2 OTTHUMG00000154169.2 +36505 chr2 HAVANA gene 71055527 71056003 477.0 + 0 ENSG00000234896.1 unprocessed_pseudogene OR7E62P 1 OTTHUMG00000154168.1 pseudo_consens +36506 chr2 HAVANA gene 71002531 71064743 570.0 - 0 ENSG00000236469.1 antisense AC007881.2 1 OTTHUMG00000153726.4 +36507 chr2 HAVANA gene 71067519 71068125 607.0 - 0 ENSG00000272735.1 lincRNA AC007881.3 2 OTTHUMG00000185975.1 +36508 chr2 HAVANA gene 71064344 71079805 8894.0 + 0 ENSG00000124357.12 protein_coding NAGK 1 OTTHUMG00000153239.25 +36509 chr2 HAVANA gene 71109684 71130239 1624.0 - 0 ENSG00000124370.10 protein_coding MCEE 2 OTTHUMG00000129709.22 +36510 chr2 HAVANA gene 71130314 71150101 4673.0 + 0 ENSG00000124383.8 protein_coding MPHOSPH10 2 OTTHUMG00000129715.6 +36511 chr2 HAVANA gene 71178587 71178773 187.0 + 0 ENSG00000233870.1 unprocessed_pseudogene AC007881.1 2 OTTHUMG00000153654.2 +36512 chr2 HAVANA gene 71182739 71227083 6279.0 - 0 ENSG00000124374.8 protein_coding PAIP2B 2 OTTHUMG00000153284.3 +36513 chr2 HAVANA gene 71373938 71376320 1615.0 + 0 ENSG00000281195.1 lincRNA AC007878.1 2 OTTHUMG00000189547.1 overlapping_locus +36514 chr2 ENSEMBL gene 71379755 71379858 104.0 - 0 ENSG00000200779.1 snRNA RNU6-105P 3 +36515 chr2 HAVANA gene 71276561 71435069 12474.0 + 0 ENSG00000075292.18 protein_coding ZNF638 1 OTTHUMG00000129735.20 +36516 chr2 HAVANA gene 71453722 71686768 8386.0 + 0 ENSG00000135636.13 protein_coding DYSF 2 OTTHUMG00000129757.8 +36517 chr2 HAVANA gene 71984182 71984434 253.0 - 0 ENSG00000233971.1 processed_pseudogene RPS20P10 2 OTTHUMG00000152716.1 +36518 chr2 HAVANA gene 72129238 72148038 5015.0 - 0 ENSG00000003137.8 protein_coding CYP26B1 1 OTTHUMG00000129756.5 +36519 chr2 HAVANA gene 72288785 72289110 326.0 + 0 ENSG00000228568.1 processed_pseudogene AC006461.1 1 OTTHUMG00000152715.1 pseudo_consens +36520 chr2 ENSEMBL gene 72721806 72722003 198.0 + 0 ENSG00000222536.1 snRNA RNU2-39P 3 +36521 chr2 ENSEMBL gene 72760534 72760602 69.0 + 0 ENSG00000212378.1 snoRNA RF00592 3 +36522 chr2 HAVANA gene 72175984 72826041 10197.0 - 0 ENSG00000144036.15 protein_coding EXOC6B 2 OTTHUMG00000152723.3 +36523 chr2 HAVANA gene 72887360 72892158 1480.0 + 0 ENSG00000116096.5 protein_coding SPR 1 OTTHUMG00000129777.2 +36524 chr2 HAVANA gene 72932974 72934355 473.0 - 0 ENSG00000278060.1 antisense AC012366.1 2 OTTHUMG00000187934.1 +36525 chr2 HAVANA gene 72916260 72936071 5516.0 + 0 ENSG00000135638.13 protein_coding EMX1 2 OTTHUMG00000129778.7 +36526 chr2 HAVANA gene 72942036 73075619 11087.0 - 0 ENSG00000144040.12 protein_coding SFXN5 1 OTTHUMG00000129775.8 overlapping_locus +36527 chr2 HAVANA gene 73113018 73115907 2890.0 + 0 ENSG00000272702.1 processed_transcript AC010913.1 2 OTTHUMG00000185982.2 +36528 chr2 HAVANA gene 73073382 73156721 7058.0 - 0 ENSG00000135631.16 protein_coding RAB11FIP5 1 OTTHUMG00000129779.4 overlapping_locus +36529 chr2 HAVANA gene 73202258 73212513 2749.0 + 0 ENSG00000214513.3 protein_coding NOTO 2 OTTHUMG00000164128.2 +36530 chr2 HAVANA gene 73214222 73227237 3380.0 + 0 ENSG00000135632.11 protein_coding SMYD5 1 OTTHUMG00000150482.4 +36531 chr2 HAVANA gene 73228006 73233238 1407.0 - 0 ENSG00000135617.3 protein_coding PRADC1 2 OTTHUMG00000129773.2 +36532 chr2 HAVANA gene 73233420 73253021 3591.0 + 0 ENSG00000135624.15 protein_coding CCT7 2 OTTHUMG00000152765.7 +36533 chr2 HAVANA gene 73254682 73284431 8011.0 - 0 ENSG00000163013.11 protein_coding FBXO41 2 OTTHUMG00000164127.2 +36534 chr2 HAVANA gene 73290929 73293705 2377.0 - 0 ENSG00000135625.7 protein_coding EGR4 2 OTTHUMG00000129774.5 +36535 chr2 ENSEMBL gene 73298683 73298787 105.0 + 0 ENSG00000252988.1 snRNA RNU6-111P 3 +36536 chr2 HAVANA gene 73370019 73370892 874.0 + 0 ENSG00000214484.3 processed_pseudogene RPSAP28 1 OTTHUMG00000152772.2 pseudo_consens +36537 chr2 HAVANA gene 73352610 73385677 481.0 - 0 ENSG00000285068.1 bidirectional_promoter_lncRNA AC074008.2 2 OTTHUMG00000192519.1 +36538 chr2 HAVANA gene 73456764 73459482 2105.0 + 0 ENSG00000230002.3 sense_intronic ALMS1-IT1 1 OTTHUMG00000152785.3 +36539 chr2 HAVANA gene 73469525 73471030 1506.0 + 0 ENSG00000284902.1 sense_intronic AC074008.1 2 OTTHUMG00000192520.1 +36540 chr2 HAVANA gene 73385758 73610793 14054.0 + 0 ENSG00000116127.17 protein_coding ALMS1 1 OTTHUMG00000152812.8 +36541 chr2 HAVANA gene 73640832 73642393 947.0 - 0 ENSG00000144035.3 protein_coding NAT8 2 OTTHUMG00000129818.3 +36542 chr2 HAVANA gene 73644919 73685576 1654.0 + 0 ENSG00000163016.9 transcribed_unprocessed_pseudogene ALMS1P1 2 OTTHUMG00000152773.5 +36543 chr2 HAVANA gene 73700576 73701340 765.0 - 0 ENSG00000204872.4 polymorphic_pseudogene NAT8B 2 OTTHUMG00000152811.4 +36544 chr2 HAVANA gene 73729104 73737400 2047.0 - 0 ENSG00000144034.14 protein_coding TPRKB 2 OTTHUMG00000129815.2 +36545 chr2 HAVANA gene 73750256 73750786 531.0 - 0 ENSG00000273245.1 lincRNA AC092653.1 2 OTTHUMG00000185985.1 +36546 chr2 HAVANA gene 73761269 73761781 513.0 - 0 ENSG00000280037.1 TEC AC092653.2 2 OTTHUMG00000175915.1 +36547 chr2 HAVANA gene 73762184 73780157 3544.0 - 0 ENSG00000144048.10 protein_coding DUSP11 1 OTTHUMG00000129816.3 +36548 chr2 HAVANA gene 73784189 73817147 3045.0 + 0 ENSG00000187833.7 protein_coding C2orf78 1 OTTHUMG00000152819.1 +36549 chr2 HAVANA gene 73828916 73873659 7698.0 + 0 ENSG00000124356.15 protein_coding STAMBP 1 OTTHUMG00000129817.4 +36550 chr2 HAVANA gene 73877566 73878862 527.0 + 0 ENSG00000271536.1 processed_pseudogene AC073046.2 1 OTTHUMG00000184324.1 pseudo_consens +36551 chr2 HAVANA gene 73892314 73919865 3811.0 + 0 ENSG00000163017.13 protein_coding ACTG2 1 OTTHUMG00000129813.5 +36552 chr2 HAVANA gene 73926826 73958961 1455.0 + 0 ENSG00000114956.19 protein_coding DGUOK 2 OTTHUMG00000129819.3 +36553 chr2 ENSEMBL gene 73968123 73968206 84.0 - 0 ENSG00000201876.1 rRNA_pseudogene RNA5SP97 3 +36554 chr2 HAVANA gene 73947642 73981441 865.0 - 0 ENSG00000237883.1 antisense DGUOK-AS1 1 OTTHUMG00000152820.1 +36555 chr2 HAVANA gene 73985132 73986343 390.0 + 0 ENSG00000235499.1 lincRNA AC073046.1 2 OTTHUMG00000152824.2 +36556 chr2 HAVANA gene 73998337 73998548 212.0 - 0 ENSG00000279181.1 TEC AC110801.1 2 OTTHUMG00000175920.1 +36557 chr2 HAVANA gene 73986404 74108176 12271.0 + 0 ENSG00000187605.15 protein_coding TET3 2 OTTHUMG00000152823.8 +36558 chr2 HAVANA gene 74120680 74123218 1994.0 + 0 ENSG00000257800.1 processed_pseudogene FNBP1P1 1 OTTHUMG00000170236.1 pseudo_consens +36559 chr2 HAVANA gene 74130583 74135395 1264.0 + 0 ENSG00000217702.2 lincRNA AC073263.1 2 OTTHUMG00000187098.2 +36560 chr2 HAVANA gene 74135398 74147994 3156.0 - 0 ENSG00000163170.11 protein_coding BOLA3 1 OTTHUMG00000152834.2 +36561 chr2 HAVANA gene 74148009 74150061 1834.0 + 0 ENSG00000225439.2 antisense BOLA3-AS1 1 OTTHUMG00000152835.2 +36562 chr2 HAVANA gene 74152528 74178898 6440.0 - 0 ENSG00000114978.17 protein_coding MOB1A 2 OTTHUMG00000152833.2 +36563 chr2 HAVANA gene 74191388 74192245 858.0 + 0 ENSG00000279201.1 TEC AC073263.3 2 OTTHUMG00000187099.1 +36564 chr2 HAVANA gene 74196698 74198560 1863.0 - 0 ENSG00000279070.2 lincRNA AC073263.2 2 OTTHUMG00000175955.2 +36565 chr2 HAVANA gene 74198562 74217565 4870.0 + 0 ENSG00000065911.11 protein_coding MTHFD2 2 OTTHUMG00000129814.4 +36566 chr2 HAVANA gene 74306728 74308008 1281.0 - 0 ENSG00000229798.1 processed_pseudogene KRT18P26 1 OTTHUMG00000152933.1 pseudo_consens,overlapping_locus +36567 chr2 ENSEMBL gene 74319399 74319501 103.0 + 0 ENSG00000252214.1 snRNA RNU6-542P 3 +36568 chr2 HAVANA gene 74216242 74343414 8025.0 - 0 ENSG00000188687.17 protein_coding SLC4A5 1 OTTHUMG00000090263.7 overlapping_locus +36569 chr2 HAVANA gene 74350069 74351009 727.0 + 0 ENSG00000234632.1 processed_pseudogene NECAP1P2 1 OTTHUMG00000152815.1 pseudo_consens +36570 chr2 HAVANA gene 74351134 74351419 286.0 + 0 ENSG00000225658.1 processed_pseudogene TAF13P2 1 OTTHUMG00000152793.1 pseudo_consens +36571 chr2 HAVANA gene 74211604 74363377 5059.0 - 0 ENSG00000264324.1 protein_coding AC006030.1 2 OTTHUMG00000179354.1 overlapping_locus +36572 chr2 HAVANA gene 74361154 74392087 10439.0 - 0 ENSG00000204843.12 protein_coding DCTN1 1 OTTHUMG00000129963.31 overlapping_locus +36573 chr2 HAVANA gene 74385486 74393882 3174.0 + 0 ENSG00000237737.5 antisense DCTN1-AS1 2 OTTHUMG00000152826.1 +36574 chr2 HAVANA gene 74407797 74413603 982.0 - 0 ENSG00000234521.2 transcribed_unitary_pseudogene AC005041.2 2 OTTHUMG00000152825.2 overlapping_locus +36575 chr2 HAVANA gene 74418122 74418442 321.0 - 0 ENSG00000233155.1 processed_pseudogene HMGA1P8 2 OTTHUMG00000152827.1 overlapping_locus +36576 chr2 HAVANA gene 74414176 74421591 2995.0 - 0 ENSG00000284308.1 protein_coding C2orf81 2 OTTHUMG00000164184.3 overlapping_locus +36577 chr2 HAVANA gene 74393836 74421662 7033.0 - 0 ENSG00000159239.13 protein_coding AC005041.1 1 OTTHUMG00000191871.1 overlapping_locus +36578 chr2 HAVANA gene 74421678 74425755 2860.0 + 0 ENSG00000005448.16 protein_coding WDR54 1 OTTHUMG00000129951.4 +36579 chr2 HAVANA gene 74425836 74442422 5190.0 - 0 ENSG00000114993.16 protein_coding RTKN 1 OTTHUMG00000129955.6 +36580 chr2 HAVANA gene 74455023 74457960 1522.0 + 0 ENSG00000115274.14 protein_coding INO80B 2 OTTHUMG00000129959.4 overlapping_locus +36581 chr2 HAVANA gene 74455088 74460884 2040.0 + 0 ENSG00000274049.4 protein_coding INO80B-WBP1 2 OTTHUMG00000187278.1 overlapping_locus +36582 chr2 HAVANA gene 74458329 74460891 2438.0 + 0 ENSG00000239779.6 protein_coding WBP1 1 OTTHUMG00000129958.3 overlapping_locus +36583 chr2 HAVANA gene 74461057 74465410 3234.0 - 0 ENSG00000115275.12 protein_coding MOGS 1 OTTHUMG00000152886.9 +36584 chr2 HAVANA gene 74471958 74473322 1344.0 - 0 ENSG00000204822.6 protein_coding MRPL53 1 OTTHUMG00000129961.2 overlapping_locus +36585 chr2 HAVANA gene 74471986 74483408 4897.0 - 0 ENSG00000135637.13 protein_coding CCDC142 2 OTTHUMG00000129962.2 overlapping_locus +36586 chr2 HAVANA gene 74483073 74494886 5094.0 + 0 ENSG00000115282.19 protein_coding TTC31 2 OTTHUMG00000152887.1 +36587 chr2 HAVANA gene 74501717 74502365 649.0 + 0 ENSG00000272183.1 antisense AC005041.3 2 OTTHUMG00000185364.1 +36588 chr2 HAVANA gene 74497517 74503316 2389.0 - 0 ENSG00000179528.15 protein_coding LBX2 1 OTTHUMG00000170595.5 +36589 chr2 HAVANA gene 74502595 74504678 2084.0 + 0 ENSG00000257702.3 antisense LBX2-AS1 2 OTTHUMG00000170509.3 +36590 chr2 HAVANA gene 74505043 74508580 2629.0 - 0 ENSG00000115289.13 protein_coding PCGF1 2 OTTHUMG00000129954.4 +36591 chr2 HAVANA gene 74513463 74517147 2775.0 + 0 ENSG00000115297.10 protein_coding TLX2 2 OTTHUMG00000129960.4 +36592 chr2 HAVANA gene 74518131 74526336 2940.0 - 0 ENSG00000144045.13 protein_coding DQX1 1 OTTHUMG00000129965.6 +36593 chr2 HAVANA gene 74526645 74529939 2634.0 - 0 ENSG00000115307.16 protein_coding AUP1 2 OTTHUMG00000129964.3 +36594 chr2 HAVANA gene 74529377 74533348 3001.0 + 0 ENSG00000115317.11 protein_coding HTRA2 2 OTTHUMG00000129957.4 +36595 chr2 HAVANA gene 74532414 74555690 4363.0 - 0 ENSG00000115318.11 protein_coding LOXL3 2 OTTHUMG00000129953.4 +36596 chr2 HAVANA gene 74549026 74557554 3049.0 + 0 ENSG00000115325.13 protein_coding DOK1 2 OTTHUMG00000129956.3 +36597 chr2 HAVANA gene 74618856 74620979 813.0 - 0 ENSG00000233872.1 processed_pseudogene AC005033.1 2 OTTHUMG00000152919.1 overlapping_locus +36598 chr2 HAVANA gene 74628328 74628942 615.0 - 0 ENSG00000108442.2 processed_pseudogene TVP23BP2 1 OTTHUMG00000152917.1 pseudo_consens,overlapping_locus +36599 chr2 HAVANA gene 74557883 74648338 3000.0 - 0 ENSG00000159374.17 protein_coding M1AP 1 OTTHUMG00000152918.7 overlapping_locus +36600 chr2 HAVANA gene 74654228 74683853 6227.0 + 0 ENSG00000135622.12 protein_coding SEMA4F 2 OTTHUMG00000129952.9 +36601 chr2 HAVANA gene 74754670 74754819 150.0 - 0 ENSG00000224646.2 processed_pseudogene AC007387.1 1 OTTHUMG00000152924.1 pseudo_consens +36602 chr2 HAVANA gene 74832655 74833987 1333.0 - 0 ENSG00000272711.1 lincRNA AC019069.1 2 OTTHUMG00000185987.1 +36603 chr2 HAVANA gene 74833981 74893359 6064.0 + 0 ENSG00000159399.9 protein_coding HK2 1 OTTHUMG00000129972.7 +36604 chr2 HAVANA gene 74919555 74924846 763.0 - 0 ENSG00000236209.1 lincRNA AC104135.1 2 OTTHUMG00000152930.1 +36605 chr2 HAVANA gene 74918148 74938418 4176.0 + 0 ENSG00000204792.2 lincRNA LINC01291 1 OTTHUMG00000152932.1 +36606 chr2 HAVANA gene 74940258 74942670 1266.0 + 0 ENSG00000230836.1 lincRNA LINC01293 2 OTTHUMG00000152931.1 +36607 chr2 HAVANA gene 74958492 74970128 2151.0 + 0 ENSG00000115350.11 protein_coding POLE4 2 OTTHUMG00000129971.2 +36608 chr2 ENSEMBL gene 75090812 75090914 103.0 + 0 ENSG00000263909.1 miRNA MIR5000 3 +36609 chr2 HAVANA gene 75154366 75189949 3438.0 + 0 ENSG00000270571.2 antisense AC007681.1 2 OTTHUMG00000185268.2 +36610 chr2 HAVANA gene 75046463 75199700 5308.0 - 0 ENSG00000115353.10 protein_coding TACR1 2 OTTHUMG00000129973.3 +36611 chr2 HAVANA gene 75455994 75456578 585.0 - 0 ENSG00000236167.1 processed_pseudogene GAPDHP57 1 OTTHUMG00000152942.1 pseudo_consens +36612 chr2 HAVANA gene 75474453 75482579 336.0 + 0 ENSG00000237293.1 antisense AC007099.2 2 OTTHUMG00000152939.1 +36613 chr2 ENSEMBL gene 75489576 75489710 135.0 + 0 ENSG00000238410.1 snoRNA RF01233 3 +36614 chr2 HAVANA gene 75524068 75542706 1185.0 + 0 ENSG00000231172.2 antisense AC007099.1 2 OTTHUMG00000152941.2 +36615 chr2 HAVANA gene 75469302 75569722 2744.0 - 0 ENSG00000115363.13 protein_coding EVA1A 1 OTTHUMG00000129991.3 +36616 chr2 HAVANA gene 75598071 75598559 489.0 + 0 ENSG00000230477.1 processed_pseudogene AC005034.1 2 OTTHUMG00000152943.1 +36617 chr2 ENSEMBL gene 75627950 75628168 219.0 + 0 ENSG00000221638.2 snoRNA RF00012 3 +36618 chr2 HAVANA gene 75651288 75651627 340.0 - 0 ENSG00000226247.1 processed_pseudogene SUPT4H1P1 1 OTTHUMG00000152940.1 pseudo_consens +36619 chr2 HAVANA gene 75660462 75662208 1747.0 + 0 ENSG00000270696.1 antisense AC005034.3 2 OTTHUMG00000185090.2 overlapping_locus +36620 chr2 HAVANA gene 75669989 75670454 466.0 + 0 ENSG00000271452.1 sense_intronic AC005034.5 2 OTTHUMG00000185091.1 overlapping_locus +36621 chr2 HAVANA gene 75646783 75690851 4601.0 + 0 ENSG00000115364.13 protein_coding MRPL19 1 OTTHUMG00000129990.5 overlapping_locus +36622 chr2 HAVANA gene 75697583 75697996 414.0 + 0 ENSG00000270462.1 antisense AC005034.2 2 OTTHUMG00000185092.1 +36623 chr2 HAVANA gene 75652000 75710989 5465.0 - 0 ENSG00000005436.13 protein_coding GCFC2 1 OTTHUMG00000129989.4 +36624 chr2 HAVANA gene 75719120 75720018 899.0 + 0 ENSG00000270996.1 lincRNA AC005034.4 2 OTTHUMG00000185093.1 +36625 chr2 HAVANA gene 76106016 76107324 1309.0 - 0 ENSG00000233107.1 processed_pseudogene SUCLA2P2 1 OTTHUMG00000152944.1 pseudo_consens +36626 chr2 HAVANA gene 76258034 76258897 864.0 - 0 ENSG00000228209.1 processed_pseudogene AC073091.1 1 OTTHUMG00000152945.2 pseudo_consens +36627 chr2 HAVANA gene 76260755 76261661 907.0 - 0 ENSG00000271356.1 processed_pseudogene AC073091.2 1 OTTHUMG00000184501.1 pseudo_consens +36628 chr2 ENSEMBL gene 76445079 76445410 332.0 - 0 ENSG00000200488.1 misc_RNA RN7SKP203 3 +36629 chr2 ENSEMBL gene 76595413 76595678 266.0 - 0 ENSG00000251947.1 misc_RNA RN7SKP164 3 +36630 chr2 ENSEMBL gene 76772909 76773045 137.0 + 0 ENSG00000200028.1 rRNA_pseudogene RNA5SP98 3 +36631 chr2 HAVANA gene 76985965 77009791 1000.0 + 0 ENSG00000234653.1 antisense AC079117.1 2 OTTHUMG00000152840.1 +36632 chr2 HAVANA gene 76747719 77593319 5410.0 - 0 ENSG00000176204.13 protein_coding LRRTM4 1 OTTHUMG00000152842.3 +36633 chr2 HAVANA gene 77652413 77654668 284.0 - 0 ENSG00000227088.1 lincRNA AC084149.1 2 OTTHUMG00000152843.1 +36634 chr2 HAVANA gene 77672215 77673792 797.0 + 0 ENSG00000230968.1 lincRNA AC084149.2 1 OTTHUMG00000152841.1 +36635 chr2 HAVANA gene 77788382 77793087 418.0 + 0 ENSG00000237077.1 transcribed_processed_pseudogene AC105399.1 1 OTTHUMG00000152847.2 pseudo_consens +36636 chr2 HAVANA gene 77915934 77918011 637.0 + 0 ENSG00000233605.2 lincRNA LINC01851 1 OTTHUMG00000152845.2 +36637 chr2 HAVANA gene 78088730 78127806 1103.0 + 0 ENSG00000229494.1 lincRNA AC012494.1 2 OTTHUMG00000152846.1 +36638 chr2 HAVANA gene 78412793 78413094 302.0 - 0 ENSG00000214429.3 processed_pseudogene CYCSP6 1 OTTHUMG00000152870.1 pseudo_consens +36639 chr2 HAVANA gene 78437850 78438921 1072.0 + 0 ENSG00000270470.1 processed_pseudogene AC064872.1 1 OTTHUMG00000184323.1 pseudo_consens +36640 chr2 HAVANA gene 78597911 78599406 371.0 + 0 ENSG00000234877.2 lincRNA AC092660.1 2 OTTHUMG00000152871.2 +36641 chr2 ENSEMBL gene 78882447 78882552 106.0 + 0 ENSG00000202423.1 snRNA RNU6-827P 3 +36642 chr2 ENSEMBL gene 78882628 78882734 107.0 + 0 ENSG00000200048.1 snRNA RNU6-812P 3 +36643 chr2 HAVANA gene 79025686 79028505 1845.0 + 0 ENSG00000143954.12 protein_coding REG3G 1 OTTHUMG00000130018.3 +36644 chr2 HAVANA gene 79085030 79088019 2384.0 - 0 ENSG00000172023.7 protein_coding REG1B 2 OTTHUMG00000130019.2 +36645 chr2 HAVANA gene 79120362 79123419 1725.0 + 0 ENSG00000115386.5 protein_coding REG1A 2 OTTHUMG00000130016.2 +36646 chr2 HAVANA gene 79135503 79138427 2586.0 - 0 ENSG00000204787.8 transcribed_unprocessed_pseudogene REG1CP 2 OTTHUMG00000152978.3 +36647 chr2 HAVANA gene 79157003 79159753 1583.0 - 0 ENSG00000172016.15 protein_coding REG3A 2 OTTHUMG00000130017.3 +36648 chr2 HAVANA gene 79158374 79185523 491.0 + 0 ENSG00000224879.1 sense_overlapping AC011754.1 2 OTTHUMG00000152958.1 overlapping_locus +36649 chr2 HAVANA gene 79493716 79500844 669.0 - 0 ENSG00000229385.1 antisense AC010975.1 1 OTTHUMG00000152910.1 +36650 chr2 HAVANA gene 79547151 79548128 978.0 - 0 ENSG00000277171.1 unprocessed_pseudogene AC010975.3 2 OTTHUMG00000187601.1 +36651 chr2 HAVANA gene 79573764 79575593 588.0 - 0 ENSG00000230237.1 processed_pseudogene AC010975.2 1 OTTHUMG00000152950.2 pseudo_consens +36652 chr2 ENSEMBL gene 79636862 79636963 102.0 - 0 ENSG00000252031.1 snRNA RNU6-561P 3 +36653 chr2 ENSEMBL gene 79649294 79649359 66.0 - 0 ENSG00000266436.1 miRNA MIR4264 3 +36654 chr2 ENSEMBL gene 79866495 79866583 89.0 - 0 ENSG00000276917.1 miRNA MIR8080 3 +36655 chr2 HAVANA gene 80028012 80030551 486.0 - 0 ENSG00000224731.1 antisense AC016716.2 1 OTTHUMG00000152926.1 +36656 chr2 HAVANA gene 80162428 80163135 708.0 - 0 ENSG00000223427.1 processed_pseudogene AC016716.1 1 OTTHUMG00000152889.1 pseudo_consens +36657 chr2 HAVANA gene 80288351 80304749 5044.0 - 0 ENSG00000162951.10 protein_coding LRRTM1 2 OTTHUMG00000130021.8 +36658 chr2 HAVANA gene 80572681 80618777 3357.0 - 0 ENSG00000237031.7 antisense AC008067.1 2 OTTHUMG00000152911.4 +36659 chr2 HAVANA gene 79185231 80648861 7535.0 + 0 ENSG00000066032.18 protein_coding CTNNA2 1 OTTHUMG00000152903.13 overlapping_locus +36660 chr2 HAVANA gene 80699388 80870190 769.0 - 0 ENSG00000230975.1 lincRNA AC012355.1 2 OTTHUMG00000152890.1 +36661 chr2 HAVANA gene 81194337 81201184 6848.0 - 0 ENSG00000234429.1 processed_pseudogene AC105342.1 1 OTTHUMG00000152946.1 pseudo_consens +36662 chr2 HAVANA gene 81418723 81419302 580.0 - 0 ENSG00000231722.1 processed_pseudogene AC012075.1 1 OTTHUMG00000152948.1 pseudo_consens +36663 chr2 HAVANA gene 81461358 81467468 1422.0 - 0 ENSG00000235519.2 lincRNA LINC01815 1 OTTHUMG00000152947.2 +36664 chr2 ENSEMBL gene 81496214 81496327 114.0 - 0 ENSG00000200890.1 rRNA_pseudogene RNA5SP99 3 +36665 chr2 HAVANA gene 81666477 81666728 252.0 - 0 ENSG00000233444.1 processed_pseudogene AC013262.1 2 OTTHUMG00000152953.1 +36666 chr2 ENSEMBL gene 81967079 81967374 296.0 + 0 ENSG00000242118.3 misc_RNA RN7SL201P 3 +36667 chr2 HAVANA gene 81983272 82005700 488.0 - 0 ENSG00000231781.1 lincRNA AC079896.1 2 OTTHUMG00000152955.1 +36668 chr2 ENSEMBL gene 82268612 82268706 95.0 + 0 ENSG00000252897.1 snRNA RNU6-685P 3 +36669 chr2 HAVANA gene 82268427 82269927 1501.0 - 0 ENSG00000229560.1 processed_pseudogene LYARP1 2 OTTHUMG00000152954.1 +36670 chr2 ENSEMBL gene 82307067 82307168 102.0 - 0 ENSG00000201311.1 misc_RNA RF00019 3 +36671 chr2 HAVANA gene 82479128 82538711 385.0 - 0 ENSG00000237498.2 lincRNA AC010105.1 2 OTTHUMG00000152956.2 +36672 chr2 HAVANA gene 82609652 82609977 326.0 + 0 ENSG00000226860.1 processed_pseudogene AC109638.1 1 OTTHUMG00000152957.1 pseudo_consens +36673 chr2 HAVANA gene 82814984 82815516 533.0 + 0 ENSG00000226700.1 processed_pseudogene MTND4P25 2 OTTHUMG00000152963.1 +36674 chr2 HAVANA gene 82815809 82817528 1720.0 + 0 ENSG00000225045.1 processed_pseudogene MTND5P27 2 OTTHUMG00000152965.1 +36675 chr2 HAVANA gene 82817538 82818061 524.0 - 0 ENSG00000224695.1 processed_pseudogene MTND6P7 2 OTTHUMG00000152964.1 +36676 chr2 HAVANA gene 82818131 82819264 1134.0 + 0 ENSG00000227789.1 processed_pseudogene MTCYBP7 2 OTTHUMG00000152962.1 +36677 chr2 HAVANA gene 82856826 82857384 559.0 + 0 ENSG00000168129.8 processed_pseudogene DHFRP3 1 OTTHUMG00000152960.1 pseudo_consens +36678 chr2 HAVANA gene 83218890 83219105 216.0 - 0 ENSG00000223977.1 processed_pseudogene AC138623.1 2 OTTHUMG00000152961.1 +36679 chr2 HAVANA gene 83522814 83523502 303.0 + 0 ENSG00000232548.1 lincRNA LINC01809 2 OTTHUMG00000152969.1 +36680 chr2 HAVANA gene 83594956 83595243 288.0 + 0 ENSG00000224627.1 processed_pseudogene RPL37P10 1 OTTHUMG00000152971.1 pseudo_consens +36681 chr2 ENSEMBL gene 83657735 83657842 108.0 + 0 ENSG00000199295.1 snRNA RNU6-1312P 3 +36682 chr2 HAVANA gene 84031140 84032358 1219.0 + 0 ENSG00000228225.1 processed_pseudogene AC016908.1 1 OTTHUMG00000152974.2 pseudo_consens +36683 chr2 HAVANA gene 84039885 84040720 836.0 - 0 ENSG00000228902.1 processed_pseudogene ST6GALNAC2P1 1 OTTHUMG00000152973.1 pseudo_consens +36684 chr2 HAVANA gene 84290683 84292202 1223.0 + 0 ENSG00000182814.7 transcribed_processed_pseudogene FUNDC2P2 1 OTTHUMG00000152875.4 pseudo_consens +36685 chr2 HAVANA gene 84315108 84350774 646.0 + 0 ENSG00000228272.1 lincRNA AC106874.1 1 OTTHUMG00000152874.1 +36686 chr2 HAVANA gene 84423523 84460045 4286.0 - 0 ENSG00000163541.11 protein_coding SUCLG1 2 OTTHUMG00000130023.5 +36687 chr2 HAVANA gene 84750769 84751231 463.0 + 0 ENSG00000259056.1 transcribed_unprocessed_pseudogene DUXAP1 1 OTTHUMG00000170724.1 pseudo_consens,overlapping_locus +36688 chr2 HAVANA gene 84777259 84778223 965.0 - 0 ENSG00000235847.2 processed_pseudogene LDHAP7 1 OTTHUMG00000152923.2 pseudo_consens +36689 chr2 HAVANA gene 84516455 84819589 13514.0 + 0 ENSG00000115423.18 protein_coding DNAH6 2 OTTHUMG00000128957.10 overlapping_locus +36690 chr2 HAVANA gene 84850711 84851148 438.0 + 0 ENSG00000276362.1 unprocessed_pseudogene AC010087.1 2 OTTHUMG00000187606.1 +36691 chr2 HAVANA gene 84874696 84875020 325.0 + 0 ENSG00000213400.3 processed_pseudogene RPL12P18 1 OTTHUMG00000152921.1 pseudo_consens +36692 chr2 HAVANA gene 84905625 84906675 496.0 + 0 ENSG00000034510.5 protein_coding TMSB10 2 OTTHUMG00000130027.6 +36693 chr2 HAVANA gene 84821650 84907008 8771.0 - 0 ENSG00000186854.10 protein_coding TRABD2A 1 OTTHUMG00000152922.6 +36694 chr2 HAVANA gene 84915868 84916660 793.0 + 0 ENSG00000213399.3 processed_pseudogene AC022210.1 1 OTTHUMG00000153009.1 pseudo_consens +36695 chr2 HAVANA gene 84971093 85059472 7968.0 + 0 ENSG00000176407.17 protein_coding KCMF1 1 OTTHUMG00000153004.13 +36696 chr2 HAVANA gene 85064108 85067347 3137.0 - 0 ENSG00000260840.1 lincRNA LINC01964 2 OTTHUMG00000175958.2 +36697 chr2 HAVANA gene 85068809 85069031 223.0 - 0 ENSG00000235463.1 processed_pseudogene AC078974.1 2 OTTHUMG00000154059.1 +36698 chr2 HAVANA gene 85102389 85102694 306.0 - 0 ENSG00000225787.1 processed_pseudogene LSM3P3 1 OTTHUMG00000153212.1 pseudo_consens +36699 chr2 HAVANA gene 85186409 85187253 458.0 + 0 ENSG00000231134.1 sense_intronic TCF7L1-IT1 1 OTTHUMG00000153211.1 overlapping_locus +36700 chr2 ENSEMBL gene 85204926 85205032 107.0 + 0 ENSG00000200701.1 snRNA RNU6-674P 3 +36701 chr2 HAVANA gene 85262144 85262267 124.0 - 0 ENSG00000230299.1 processed_pseudogene AC093162.1 1 OTTHUMG00000153014.1 pseudo_consens +36702 chr2 HAVANA gene 85133410 85310388 4414.0 + 0 ENSG00000152284.4 protein_coding TCF7L1 1 OTTHUMG00000130026.5 ncRNA_host,overlapping_locus +36703 chr2 HAVANA gene 85315041 85316529 704.0 + 0 ENSG00000246575.2 unprocessed_pseudogene AC093162.2 2 OTTHUMG00000130172.4 +36704 chr2 HAVANA gene 85318020 85328425 7081.0 - 0 ENSG00000152291.13 protein_coding TGOLN2 1 OTTHUMG00000153017.4 +36705 chr2 ENSEMBL gene 85332895 85332996 102.0 - 0 ENSG00000239143.1 misc_RNA RF00019 3 +36706 chr2 HAVANA gene 85341281 85341838 558.0 - 0 ENSG00000270532.1 processed_pseudogene PEBP1P2 1 OTTHUMG00000184503.1 pseudo_consens +36707 chr2 HAVANA gene 85342088 85354620 4005.0 - 0 ENSG00000042445.13 protein_coding RETSAT 1 OTTHUMG00000154611.5 +36708 chr2 HAVANA gene 85360798 85360925 128.0 - 0 ENSG00000271014.1 processed_pseudogene AC062037.1 1 OTTHUMG00000184504.1 pseudo_consens +36709 chr2 ENSEMBL gene 85367585 85367686 102.0 + 0 ENSG00000202382.1 misc_RNA RF00019 3 +36710 chr2 ENSEMBL gene 85368282 85368580 299.0 + 0 ENSG00000278590.1 misc_RNA RN7SL113P 3 +36711 chr2 HAVANA gene 85387074 85387146 73.0 - 0 ENSG00000273196.1 antisense AC062037.2 2 OTTHUMG00000185994.1 +36712 chr2 HAVANA gene 85354394 85391752 7259.0 + 0 ENSG00000115459.17 protein_coding ELMOD3 1 OTTHUMG00000130170.16 ncRNA_host +36713 chr2 HAVANA gene 85394748 85418432 2607.0 - 0 ENSG00000042493.15 protein_coding CAPG 1 OTTHUMG00000130183.22 +36714 chr2 ENSEMBL gene 85434507 85434619 113.0 + 0 ENSG00000207207.1 misc_RNA RF00019 3 +36715 chr2 HAVANA gene 85418721 85437029 3858.0 + 0 ENSG00000152292.16 protein_coding SH2D6 2 OTTHUMG00000130176.5 ncRNA_host +36716 chr2 ENSEMBL gene 85442495 85442791 297.0 + 0 ENSG00000244399.3 misc_RNA RN7SL251P 3 +36717 chr2 ENSEMBL gene 85460144 85460252 109.0 - 0 ENSG00000199936.1 misc_RNA RF00019 3 +36718 chr2 HAVANA gene 85490930 85491780 851.0 - 0 ENSG00000229648.1 processed_pseudogene RPSAP22 1 OTTHUMG00000153083.1 pseudo_consens +36719 chr2 HAVANA gene 85539165 85545280 4487.0 + 0 ENSG00000168906.12 protein_coding MAT2A 1 OTTHUMG00000130174.6 +36720 chr2 HAVANA gene 85544723 85561547 9098.0 - 0 ENSG00000115486.11 protein_coding GGCX 2 OTTHUMG00000130173.7 +36721 chr2 ENSEMBL gene 85567662 85567960 299.0 - 0 ENSG00000276281.1 misc_RNA RN7SL126P 3 +36722 chr2 HAVANA gene 85561562 85582031 990.0 + 0 ENSG00000118640.10 protein_coding VAMP8 1 OTTHUMG00000130180.4 +36723 chr2 HAVANA gene 85584408 85593412 819.0 + 0 ENSG00000168899.4 protein_coding VAMP5 2 OTTHUMG00000130169.2 +36724 chr2 HAVANA gene 85595725 85597613 1220.0 + 0 ENSG00000168894.9 protein_coding RNF181 1 OTTHUMG00000130182.4 +36725 chr2 HAVANA gene 85598548 85603196 3094.0 - 0 ENSG00000168890.13 protein_coding TMEM150A 2 OTTHUMG00000130168.4 +36726 chr2 HAVANA gene 85606654 85612066 4413.0 - 0 ENSG00000168887.10 protein_coding C2orf68 2 OTTHUMG00000153088.2 +36727 chr2 HAVANA gene 85602856 85649282 3952.0 + 0 ENSG00000168883.19 protein_coding USP39 1 OTTHUMG00000153090.10 +36728 chr2 HAVANA gene 85657314 85668741 4110.0 - 0 ENSG00000168878.16 protein_coding SFTPB 2 OTTHUMG00000130181.5 +36729 chr2 HAVANA gene 85686053 85687047 995.0 - 0 ENSG00000203363.2 processed_pseudogene AC012454.1 1 OTTHUMG00000153167.1 pseudo_consens +36730 chr2 HAVANA gene 85685175 85698854 3051.0 + 0 ENSG00000115523.16 protein_coding GNLY 1 OTTHUMG00000130179.5 +36731 chr2 ENSEMBL gene 85728194 85728337 144.0 - 0 ENSG00000199687.1 snRNA RNU1-38P 3 +36732 chr2 ENSEMBL gene 85783600 85783677 78.0 - 0 ENSG00000278783.1 miRNA MIR6071 3 +36733 chr2 HAVANA gene 85751344 85788066 6076.0 + 0 ENSG00000168874.12 protein_coding ATOH8 1 OTTHUMG00000130178.2 +36734 chr2 ENSEMBL gene 85820435 85820612 178.0 - 0 ENSG00000252321.1 misc_RNA RN7SKP83 3 +36735 chr2 HAVANA gene 85815130 85825391 1711.0 + 0 ENSG00000229498.1 antisense AC105053.1 2 OTTHUMG00000153166.1 +36736 chr2 HAVANA gene 85889280 85890980 783.0 + 0 ENSG00000232504.4 lincRNA ST3GAL5-AS1 1 OTTHUMG00000153169.4 +36737 chr2 HAVANA gene 85904279 85904727 449.0 + 0 ENSG00000272564.1 lincRNA AC012511.1 2 OTTHUMG00000185996.1 +36738 chr2 HAVANA gene 85837120 85905199 16318.0 - 0 ENSG00000115525.17 protein_coding ST3GAL5 1 OTTHUMG00000130171.16 +36739 chr2 HAVANA gene 86020216 86106155 13519.0 - 0 ENSG00000068654.15 protein_coding POLR1A 1 OTTHUMG00000153165.3 +36740 chr2 ENSEMBL gene 86135870 86136006 137.0 + 0 ENSG00000208772.1 snoRNA SNORD94 3 +36741 chr2 HAVANA gene 86106182 86142157 10164.0 + 0 ENSG00000132300.18 protein_coding PTCD3 2 OTTHUMG00000153168.5 ncRNA_host +36742 chr2 ENSEMBL gene 86159956 86160066 111.0 - 0 ENSG00000200241.1 misc_RNA RF00019 3 +36743 chr2 ENSEMBL gene 86193026 86193108 83.0 - 0 ENSG00000265420.1 miRNA MIR4779 3 +36744 chr2 HAVANA gene 86143932 86195770 3986.0 - 0 ENSG00000132305.20 protein_coding IMMT 2 OTTHUMG00000153170.5 ncRNA_host +36745 chr2 HAVANA gene 86195590 86196049 460.0 + 0 ENSG00000273080.1 antisense AC009309.1 2 OTTHUMG00000185997.1 +36746 chr2 HAVANA gene 86199355 86213794 3829.0 + 0 ENSG00000132313.14 protein_coding MRPL35 2 OTTHUMG00000037385.4 +36747 chr2 HAVANA gene 86213993 86338083 5380.0 - 0 ENSG00000068615.18 protein_coding REEP1 2 OTTHUMG00000130205.9 +36748 chr2 ENSEMBL gene 86347062 86347195 134.0 - 0 ENSG00000202537.1 snoRNA RF00096 3 +36749 chr2 ENSEMBL gene 86364136 86364265 130.0 + 0 ENSG00000251974.1 snoRNA RF00413 3 +36750 chr2 HAVANA gene 86440647 86492716 13423.0 + 0 ENSG00000115548.16 protein_coding KDM3A 1 OTTHUMG00000130204.6 +36751 chr2 ENSEMBL gene 86515204 86515308 105.0 - 0 ENSG00000200563.1 snRNA RNU6-640P 3 +36752 chr2 HAVANA gene 86503431 86563479 7018.0 - 0 ENSG00000115561.15 protein_coding CHMP3 1 OTTHUMG00000153189.26 ncRNA_host,overlapping_locus +36753 chr2 HAVANA gene 86562070 86618766 2860.0 + 0 ENSG00000228363.2 antisense AC015971.1 1 OTTHUMG00000153204.3 +36754 chr2 HAVANA gene 86603393 86623866 7599.0 - 0 ENSG00000239305.6 protein_coding RNF103 2 OTTHUMG00000153197.4 overlapping_locus +36755 chr2 HAVANA gene 86505668 86721122 1503.0 - 0 ENSG00000249884.8 protein_coding RNF103-CHMP3 2 OTTHUMG00000160822.4 ncRNA_host,overlapping_locus +36756 chr2 HAVANA gene 86720173 86778041 6804.0 + 0 ENSG00000153561.12 protein_coding RMND5A 2 OTTHUMG00000130262.3 +36757 chr2 HAVANA gene 86784610 86808396 3634.0 - 0 ENSG00000153563.15 protein_coding CD8A 2 OTTHUMG00000130265.7 +36758 chr2 HAVANA gene 86815339 86861924 1864.0 - 0 ENSG00000172116.21 protein_coding CD8B 2 OTTHUMG00000130264.6 +36759 chr2 HAVANA gene 86885075 86885731 657.0 - 0 ENSG00000213605.2 processed_pseudogene AC111200.1 1 OTTHUMG00000153247.1 pseudo_consens +36760 chr2 HAVANA gene 86861825 86912978 2553.0 + 0 ENSG00000233673.7 transcribed_unprocessed_pseudogene ANAPC1P1 2 OTTHUMG00000153325.3 overlapping_locus +36761 chr2 HAVANA gene 86930250 86930754 505.0 - 0 ENSG00000231351.2 processed_pseudogene AC111200.2 1 OTTHUMG00000153280.1 pseudo_consens +36762 chr2 HAVANA gene 86934462 86934822 361.0 - 0 ENSG00000226114.1 processed_pseudogene NDUFB4P5 1 OTTHUMG00000153279.1 pseudo_consens +36763 chr2 HAVANA gene 86907953 87013976 7166.0 + 0 ENSG00000187627.15 protein_coding RGPD1 2 OTTHUMG00000153248.11 overlapping_locus +36764 chr2 HAVANA gene 87002559 87021852 3220.0 - 0 ENSG00000183281.14 protein_coding PLGLB1 2 OTTHUMG00000154612.3 +36765 chr2 HAVANA gene 87031815 87052992 1331.0 - 0 ENSG00000231259.5 unprocessed_pseudogene AC125232.1 2 OTTHUMG00000153315.3 overlapping_locus +36766 chr2 HAVANA gene 87055658 87076060 285.0 - 0 ENSG00000266931.2 unprocessed_pseudogene AC092651.2 2 OTTHUMG00000180815.2 overlapping_locus +36767 chr2 HAVANA gene 87030675 87076429 2217.0 - 0 ENSG00000285793.1 processed_transcript AC125232.2 2 OTTHUMG00000193336.1 overlapping_locus +36768 chr2 HAVANA gene 87118534 87120980 312.0 - 0 ENSG00000230395.1 unprocessed_pseudogene AC092651.1 2 OTTHUMG00000153250.2 +36769 chr2 ENSEMBL gene 87194786 87194859 74.0 + 0 ENSG00000264793.1 miRNA MIR4771-1 3 +36770 chr2 HAVANA gene 87125198 87196629 3795.0 + 0 ENSG00000204745.4 unprocessed_pseudogene AC083899.1 2 OTTHUMG00000153253.4 +36771 chr2 HAVANA gene 87221113 87222488 1376.0 - 0 ENSG00000233671.1 processed_pseudogene AC083899.2 1 OTTHUMG00000153249.1 pseudo_consens +36772 chr2 HAVANA gene 87249095 87253750 792.0 - 0 ENSG00000281477.1 lincRNA LINC01955 2 OTTHUMG00000189701.1 +36773 chr2 HAVANA gene 87301658 87302251 594.0 + 0 ENSG00000271097.1 processed_pseudogene AC083899.3 1 OTTHUMG00000184322.1 pseudo_consens +36774 chr2 HAVANA gene 87338511 87339035 350.0 + 0 ENSG00000233999.3 IG_V_gene IGKV3OR2-268 2 OTTHUMG00000153256.3 +36775 chr2 HAVANA gene 87379880 87380767 888.0 - 0 ENSG00000224881.1 processed_pseudogene AC068279.1 2 OTTHUMG00000153254.2 +36776 chr2 HAVANA gene 87439523 87459044 1475.0 - 0 ENSG00000280721.1 lincRNA LINC01943 2 OTTHUMG00000153255.4 +36777 chr2 HAVANA gene 87477495 87478034 540.0 - 0 ENSG00000273445.1 antisense AC133644.2 2 OTTHUMG00000186003.1 +36778 chr2 HAVANA gene 87565828 87566764 937.0 - 0 ENSG00000214354.3 processed_pseudogene AC133644.1 1 OTTHUMG00000153257.2 pseudo_consens +36779 chr2 ENSEMBL gene 87629755 87629834 80.0 + 0 ENSG00000265507.1 miRNA MIR4435-1 3 +36780 chr2 HAVANA gene 87454781 87636740 17693.0 + 0 ENSG00000222041.11 lincRNA CYTOR 1 OTTHUMG00000130273.15 ncRNA_host,overlapping_locus +36781 chr2 HAVANA gene 87654890 87655243 354.0 + 0 ENSG00000225933.1 processed_pseudogene AC133965.1 1 OTTHUMG00000153258.1 pseudo_consens +36782 chr2 HAVANA gene 87700984 87738105 2095.0 + 0 ENSG00000234231.4 transcribed_unprocessed_pseudogene AC093616.1 2 OTTHUMG00000153245.7 overlapping_locus +36783 chr2 HAVANA gene 87748087 87758793 2254.0 + 0 ENSG00000125551.18 protein_coding PLGLB2 2 OTTHUMG00000153273.4 overlapping_locus +36784 chr2 HAVANA gene 87455476 87767359 3849.0 + 0 ENSG00000284879.1 processed_transcript AC133644.3 2 OTTHUMG00000192459.1 ncRNA_host,overlapping_locus +36785 chr2 HAVANA gene 87824942 87825143 202.0 + 0 ENSG00000229604.2 processed_pseudogene MTATP8P2 2 OTTHUMG00000153275.2 +36786 chr2 HAVANA gene 87755955 87825952 7023.0 - 0 ENSG00000185304.14 protein_coding RGPD2 2 OTTHUMG00000153276.3 +36787 chr2 HAVANA gene 87968609 87968971 363.0 + 0 ENSG00000225428.1 processed_pseudogene NDUFB4P7 1 OTTHUMG00000151561.1 pseudo_consens +36788 chr2 HAVANA gene 87972656 87973082 427.0 + 0 ENSG00000233205.1 processed_pseudogene AC108479.1 1 OTTHUMG00000151562.1 pseudo_consens +36789 chr2 HAVANA gene 87980714 87992858 601.0 - 0 ENSG00000275597.1 unprocessed_pseudogene AC108479.2 2 OTTHUMG00000187608.1 +36790 chr2 ENSEMBL gene 88016354 88016547 194.0 - 0 ENSG00000222724.1 snRNA RNU2-63P 3 +36791 chr2 HAVANA gene 88027205 88055729 1753.0 - 0 ENSG00000172086.7 protein_coding KRCC1 2 OTTHUMG00000130315.1 +36792 chr2 ENSEMBL gene 88082519 88082599 81.0 - 0 ENSG00000265003.1 miRNA MIR4780 3 +36793 chr2 HAVANA gene 88067780 88113387 4600.0 + 0 ENSG00000115593.14 protein_coding SMYD1 1 OTTHUMG00000155045.2 +36794 chr2 HAVANA gene 88122982 88128116 2470.0 - 0 ENSG00000163586.9 protein_coding FABP1 2 OTTHUMG00000130312.4 +36795 chr2 HAVANA gene 88170295 88186636 6431.0 + 0 ENSG00000144115.16 protein_coding THNSL2 1 OTTHUMG00000130314.3 +36796 chr2 HAVANA gene 88364695 88365608 914.0 - 0 ENSG00000232508.1 processed_pseudogene MRPL45P1 1 OTTHUMG00000155050.2 pseudo_consens +36797 chr2 ENSEMBL gene 88367793 88367862 70.0 - 0 ENSG00000283262.1 snRNA RF00026 3 +36798 chr2 ENSEMBL gene 88383494 88383597 104.0 - 0 ENSG00000212133.1 snRNA RNU6-1168P 3 +36799 chr2 ENSEMBL gene 88414898 88415004 107.0 - 0 ENSG00000252395.2 snRNA RNU6-1007P 3 +36800 chr2 HAVANA gene 88428078 88428615 203.0 + 0 ENSG00000224291.1 processed_pseudogene AC012671.1 2 OTTHUMG00000155051.1 +36801 chr2 HAVANA gene 88446787 88452656 2804.0 - 0 ENSG00000214336.4 protein_coding FOXI3 2 OTTHUMG00000155048.5 +36802 chr2 HAVANA gene 88524651 88529584 795.0 + 0 ENSG00000172073.3 protein_coding TEX37 2 OTTHUMG00000130332.1 +36803 chr2 HAVANA gene 88538720 88575610 1747.0 + 0 ENSG00000225420.1 antisense AC104134.1 2 OTTHUMG00000155047.1 +36804 chr2 HAVANA gene 88556741 88627576 5434.0 - 0 ENSG00000172071.11 protein_coding EIF2AK3 1 OTTHUMG00000155046.3 +36805 chr2 HAVANA gene 88627539 88631821 4283.0 + 0 ENSG00000234028.3 antisense AC062029.1 1 OTTHUMG00000155049.3 +36806 chr2 HAVANA gene 88691644 88750935 1848.0 + 0 ENSG00000153574.8 protein_coding RPIA 2 OTTHUMG00000130333.2 +36807 chr2 HAVANA gene 88765807 88806612 8042.0 + 0 ENSG00000230006.7 transcribed_unprocessed_pseudogene ANKRD36BP2 1 OTTHUMG00000151690.4 pseudo_consens +36808 chr2 ENSEMBL gene 88812370 88812454 85.0 + 0 ENSG00000265510.1 miRNA MIR4436A 3 +36809 chr2 HAVANA gene 88811186 88825207 1021.0 - 0 ENSG00000283270.1 transcribed_unprocessed_pseudogene AC244205.2 2 OTTHUMG00000191814.1 overlapping_locus +36810 chr2 HAVANA gene 88857161 88857683 523.0 - 0 ENSG00000211592.8 IG_C_gene IGKC 2 OTTHUMG00000151684.1 overlapping_locus +36811 chr2 HAVANA gene 88860568 88860605 38.0 - 0 ENSG00000211593.2 IG_J_gene IGKJ5 2 OTTHUMG00000151676.3 overlapping_locus +36812 chr2 HAVANA gene 88860886 88860922 37.0 - 0 ENSG00000211594.2 IG_J_gene IGKJ4 2 OTTHUMG00000151695.2 overlapping_locus +36813 chr2 HAVANA gene 88861221 88861258 38.0 - 0 ENSG00000211595.2 IG_J_gene IGKJ3 2 OTTHUMG00000151680.3 overlapping_locus +36814 chr2 HAVANA gene 88861525 88861563 39.0 - 0 ENSG00000211596.3 IG_J_gene IGKJ2 2 OTTHUMG00000151691.5 overlapping_locus +36815 chr2 HAVANA gene 88811186 88861563 705.0 - 0 ENSG00000240040.6 processed_transcript AC244205.1 2 OTTHUMG00000151694.3 overlapping_locus +36816 chr2 HAVANA gene 88861886 88861923 38.0 - 0 ENSG00000211597.2 IG_J_gene IGKJ1 2 OTTHUMG00000151679.3 overlapping_locus +36817 chr2 HAVANA gene 88885397 88886153 538.0 + 0 ENSG00000211598.2 IG_V_gene IGKV4-1 2 OTTHUMG00000151533.3 +36818 chr2 HAVANA gene 88897232 88897784 408.0 + 0 ENSG00000211599.2 IG_V_gene IGKV5-2 2 OTTHUMG00000151535.3 +36819 chr2 HAVANA gene 88915081 88915378 298.0 - 0 ENSG00000197794.2 IG_V_pseudogene IGKV7-3 2 OTTHUMG00000151534.1 +36820 chr2 HAVANA gene 88922328 88922753 426.0 - 0 ENSG00000225136.1 processed_pseudogene PGBD4P5 2 OTTHUMG00000151537.1 +36821 chr2 HAVANA gene 88931666 88932380 340.0 - 0 ENSG00000253435.1 IG_V_pseudogene IGKV2-4 2 OTTHUMG00000151536.1 +36822 chr2 HAVANA gene 88947301 88947957 532.0 - 0 ENSG00000243466.1 IG_V_gene IGKV1-5 2 OTTHUMG00000151560.2 +36823 chr2 HAVANA gene 88966262 88966767 380.0 - 0 ENSG00000239855.1 IG_V_gene IGKV1-6 2 OTTHUMG00000151559.4 +36824 chr2 HAVANA gene 88978468 88979081 445.0 - 0 ENSG00000243063.1 IG_V_gene IGKV3-7 2 OTTHUMG00000151636.2 +36825 chr2 HAVANA gene 88992409 88992931 398.0 - 0 ENSG00000240671.4 IG_V_gene IGKV1-8 2 OTTHUMG00000151634.2 +36826 chr2 HAVANA gene 89009982 89010515 409.0 - 0 ENSG00000241755.1 IG_V_gene IGKV1-9 2 OTTHUMG00000151637.2 +36827 chr2 HAVANA gene 89019992 89020686 351.0 - 0 ENSG00000253278.1 IG_V_pseudogene IGKV2-10 2 OTTHUMG00000151635.1 +36828 chr2 HAVANA gene 89027171 89027731 392.0 - 0 ENSG00000241351.3 IG_V_gene IGKV3-11 2 OTTHUMG00000151633.2 +36829 chr2 HAVANA gene 89040224 89040745 398.0 - 0 ENSG00000243290.3 IG_V_gene IGKV1-12 2 OTTHUMG00000151643.2 +36830 chr2 HAVANA gene 89045995 89046466 347.0 - 0 ENSG00000253497.1 IG_V_pseudogene IGKV1-13 2 OTTHUMG00000151647.1 +36831 chr2 HAVANA gene 89078010 89078784 347.0 - 0 ENSG00000253265.1 IG_V_pseudogene IGKV2-14 2 OTTHUMG00000151642.1 +36832 chr2 HAVANA gene 89085177 89085787 442.0 - 0 ENSG00000244437.1 IG_V_gene IGKV3-15 2 OTTHUMG00000151653.2 +36833 chr2 HAVANA gene 89099859 89100361 378.0 - 0 ENSG00000240864.3 IG_V_gene IGKV1-16 2 OTTHUMG00000151649.2 +36834 chr2 HAVANA gene 89117342 89117844 378.0 - 0 ENSG00000240382.3 IG_V_gene IGKV1-17 2 OTTHUMG00000151650.2 +36835 chr2 HAVANA gene 89128724 89129483 343.0 - 0 ENSG00000254157.1 IG_V_pseudogene IGKV2-18 2 OTTHUMG00000151644.1 +36836 chr2 HAVANA gene 89134975 89135257 283.0 - 0 ENSG00000253732.1 IG_V_pseudogene IGKV2-19 2 OTTHUMG00000151651.1 +36837 chr2 HAVANA gene 89142574 89143160 400.0 - 0 ENSG00000239951.1 IG_V_gene IGKV3-20 2 OTTHUMG00000151639.2 +36838 chr2 HAVANA gene 89159751 89160366 406.0 - 0 ENSG00000211611.2 IG_V_gene IGKV6-21 2 OTTHUMG00000151654.2 +36839 chr2 HAVANA gene 89170775 89171212 326.0 - 0 ENSG00000253578.1 IG_V_pseudogene IGKV1-22 1 OTTHUMG00000151646.2 pseudo_consens +36840 chr2 HAVANA gene 89172022 89172553 323.0 - 0 ENSG00000253625.1 IG_V_pseudogene IGKV2-23 2 OTTHUMG00000151638.1 +36841 chr2 HAVANA gene 89176328 89177160 390.0 - 0 ENSG00000241294.1 IG_V_gene IGKV2-24 2 OTTHUMG00000151655.2 +36842 chr2 HAVANA gene 89192500 89192752 253.0 - 0 ENSG00000253202.1 IG_V_pseudogene IGKV3-25 1 OTTHUMG00000151645.1 pseudo_consens +36843 chr2 HAVANA gene 89196096 89196829 343.0 - 0 ENSG00000254098.1 IG_V_pseudogene IGKV2-26 2 OTTHUMG00000151648.1 +36844 chr2 HAVANA gene 89203509 89203906 398.0 - 0 ENSG00000277852.1 unprocessed_pseudogene AC244255.1 2 OTTHUMG00000187609.1 +36845 chr2 HAVANA gene 89213423 89213928 382.0 - 0 ENSG00000244575.3 IG_V_gene IGKV1-27 2 OTTHUMG00000151640.2 +36846 chr2 HAVANA gene 89221698 89222461 390.0 - 0 ENSG00000244116.3 IG_V_gene IGKV2-28 2 OTTHUMG00000151652.2 +36847 chr2 HAVANA gene 89234174 89234912 372.0 - 0 ENSG00000253998.3 IG_V_pseudogene IGKV2-29 1 OTTHUMG00000151641.1 pseudo_consens +36848 chr2 HAVANA gene 89244781 89245596 390.0 - 0 ENSG00000243238.1 IG_V_gene IGKV2-30 2 OTTHUMG00000151692.2 +36849 chr2 HAVANA gene 89252211 89252736 329.0 - 0 ENSG00000253158.1 IG_V_pseudogene IGKV3-31 1 OTTHUMG00000151688.1 pseudo_consens +36850 chr2 HAVANA gene 89253571 89254015 311.0 - 0 ENSG00000253870.1 IG_V_pseudogene IGKV1-32 1 OTTHUMG00000151687.1 pseudo_consens +36851 chr2 HAVANA gene 89266494 89268506 421.0 - 0 ENSG00000242076.2 IG_V_gene IGKV1-33 2 OTTHUMG00000151682.2 +36852 chr2 HAVANA gene 89275298 89275787 293.0 - 0 ENSG00000253860.1 IG_V_pseudogene IGKV3-34 2 OTTHUMG00000151693.1 +36853 chr2 HAVANA gene 89286689 89286973 285.0 - 0 ENSG00000253461.1 IG_V_pseudogene IGKV1-35 1 OTTHUMG00000151681.1 pseudo_consens +36854 chr2 HAVANA gene 89295233 89295455 223.0 - 0 ENSG00000253487.1 IG_V_pseudogene IGKV2-36 2 OTTHUMG00000151683.1 +36855 chr2 HAVANA gene 89297264 89297785 398.0 - 0 ENSG00000239862.1 IG_V_gene IGKV1-37 2 OTTHUMG00000151689.2 +36856 chr2 HAVANA gene 89309898 89310144 247.0 - 0 ENSG00000253592.1 IG_V_pseudogene IGKV2-38 1 OTTHUMG00000151685.1 pseudo_consens +36857 chr2 HAVANA gene 89319625 89320146 398.0 - 0 ENSG00000242371.1 IG_V_gene IGKV1-39 2 OTTHUMG00000151678.2 +36858 chr2 HAVANA gene 89330110 89330429 320.0 - 0 ENSG00000273962.1 IG_V_gene IGKV2-40 2 OTTHUMG00000188265.3 +36859 chr2 HAVANA gene 89533185 89547106 1252.0 + 0 ENSG00000283427.1 unprocessed_pseudogene AC006453.4 2 OTTHUMG00000191641.1 +36860 chr2 HAVANA gene 89542842 89585652 2414.0 - 0 ENSG00000283196.2 transcribed_unprocessed_pseudogene AC006453.2 2 OTTHUMG00000191642.2 +36861 chr2 ENSEMBL gene 89600571 89600680 110.0 + 0 ENSG00000276861.1 rRNA RF00001 3 +36862 chr2 HAVANA gene 89622213 89640635 1257.0 - 0 ENSG00000283132.1 unprocessed_pseudogene AC006453.1 2 OTTHUMG00000191643.1 +36863 chr2 HAVANA gene 89662601 89662977 377.0 + 0 ENSG00000283214.1 unprocessed_pseudogene AC006453.3 2 OTTHUMG00000191718.1 +36864 chr2 HAVANA gene 89666033 89683204 619.0 + 0 ENSG00000283659.1 unprocessed_pseudogene AC006453.5 2 OTTHUMG00000191644.1 +36865 chr2 HAVANA gene 89851791 89852497 336.0 + 0 ENSG00000251039.2 IG_V_gene IGKV2D-40 2 OTTHUMG00000159963.2 +36866 chr2 HAVANA gene 89862482 89862981 376.0 + 0 ENSG00000251546.1 IG_V_gene IGKV1D-39 2 OTTHUMG00000159962.2 +36867 chr2 HAVANA gene 89872463 89872702 240.0 + 0 ENSG00000254009.1 IG_V_pseudogene IGKV2D-38 1 OTTHUMG00000159961.1 pseudo_consens +36868 chr2 HAVANA gene 89884740 89885216 353.0 + 0 ENSG00000250036.1 IG_V_gene IGKV1D-37 2 OTTHUMG00000159960.2 +36869 chr2 HAVANA gene 89887022 89887247 226.0 + 0 ENSG00000253127.1 IG_V_pseudogene IGKV2D-36 2 OTTHUMG00000151611.1 +36870 chr2 HAVANA gene 89895502 89895772 271.0 + 0 ENSG00000232747.2 IG_V_pseudogene IGKV1D-35 1 OTTHUMG00000151603.1 pseudo_consens +36871 chr2 HAVANA gene 89906757 89907246 302.0 + 0 ENSG00000253501.1 IG_V_pseudogene IGKV3D-34 2 OTTHUMG00000151601.1 +36872 chr2 HAVANA gene 89913982 89916052 479.0 + 0 ENSG00000239975.2 IG_V_gene IGKV1D-33 2 OTTHUMG00000151602.2 +36873 chr2 HAVANA gene 89928422 89928867 318.0 + 0 ENSG00000253191.1 IG_V_pseudogene IGKV1D-32 2 OTTHUMG00000151614.1 +36874 chr2 HAVANA gene 89929701 89930202 281.0 + 0 ENSG00000253999.1 IG_V_pseudogene IGKV3D-31 1 OTTHUMG00000151612.1 pseudo_consens +36875 chr2 HAVANA gene 89936859 89937679 395.0 + 0 ENSG00000239571.1 IG_V_gene IGKV2D-30 2 OTTHUMG00000151613.2 +36876 chr2 HAVANA gene 89947512 89948279 400.0 + 0 ENSG00000243264.2 IG_V_gene IGKV2D-29 2 OTTHUMG00000151619.2 +36877 chr2 HAVANA gene 89959979 89960754 402.0 + 0 ENSG00000242534.2 IG_V_gene IGKV2D-28 2 OTTHUMG00000151616.3 +36878 chr2 HAVANA gene 89968867 89969335 335.0 + 0 ENSG00000224607.4 IG_V_pseudogene IGKV1D-27 1 OTTHUMG00000151607.1 pseudo_consens +36879 chr2 HAVANA gene 89985922 89986702 390.0 + 0 ENSG00000211623.2 IG_V_gene IGKV2D-26 2 OTTHUMG00000151606.3 +36880 chr2 HAVANA gene 89989987 89990221 235.0 + 0 ENSG00000254097.1 IG_V_pseudogene IGKV3D-25 1 OTTHUMG00000151609.1 pseudo_consens +36881 chr2 HAVANA gene 90004797 90005629 390.0 + 0 ENSG00000241566.1 IG_V_gene IGKV2D-24 2 OTTHUMG00000151618.2 +36882 chr2 HAVANA gene 90009402 90009927 286.0 + 0 ENSG00000254345.1 IG_V_pseudogene IGKV2D-23 2 OTTHUMG00000151605.1 +36883 chr2 HAVANA gene 90010741 90011184 324.0 + 0 ENSG00000253365.1 IG_V_pseudogene IGKV1D-22 1 OTTHUMG00000151604.1 pseudo_consens +36884 chr2 HAVANA gene 90021567 90022185 409.0 + 0 ENSG00000225523.2 IG_V_gene IGKV6D-21 2 OTTHUMG00000151608.2 +36885 chr2 HAVANA gene 90038848 90039479 445.0 + 0 ENSG00000211625.2 IG_V_gene IGKV3D-20 2 OTTHUMG00000151615.2 +36886 chr2 HAVANA gene 90046796 90047057 262.0 + 0 ENSG00000253765.1 IG_V_pseudogene IGKV2D-19 1 OTTHUMG00000151617.1 pseudo_consens +36887 chr2 HAVANA gene 90052581 90053372 375.0 + 0 ENSG00000254220.1 IG_V_pseudogene IGKV2D-18 2 OTTHUMG00000151620.1 +36888 chr2 HAVANA gene 90069662 90070238 371.0 + 0 ENSG00000211626.2 IG_V_gene IGKV6D-41 2 OTTHUMG00000151621.2 +36889 chr2 HAVANA gene 90082635 90083291 532.0 + 0 ENSG00000242766.1 IG_V_gene IGKV1D-17 2 OTTHUMG00000151610.2 +36890 chr2 HAVANA gene 90100236 90100738 378.0 + 0 ENSG00000241244.1 IG_V_gene IGKV1D-16 2 OTTHUMG00000151569.3 +36891 chr2 HAVANA gene 90114838 90115402 396.0 + 0 ENSG00000224041.3 IG_V_gene IGKV3D-15 2 OTTHUMG00000151568.5 +36892 chr2 HAVANA gene 90121786 90122564 355.0 + 0 ENSG00000254292.1 IG_V_pseudogene IGKV2D-14 2 OTTHUMG00000151565.1 +36893 chr2 HAVANA gene 90154073 90154574 376.0 + 0 ENSG00000276566.1 IG_V_gene IGKV1D-13 2 OTTHUMG00000188271.2 +36894 chr2 HAVANA gene 90159840 90160335 371.0 + 0 ENSG00000278857.1 IG_V_gene IGKV1D-12 2 OTTHUMG00000188272.2 +36895 chr2 HAVANA gene 90172802 90173414 444.0 + 0 ENSG00000211632.4 IG_V_gene IGKV3D-11 2 OTTHUMG00000151563.5 +36896 chr2 HAVANA gene 90179889 90180587 281.0 + 0 ENSG00000253906.1 IG_V_pseudogene IGKV2D-10 2 OTTHUMG00000151567.1 +36897 chr2 HAVANA gene 90190193 90190681 373.0 + 0 ENSG00000211633.3 IG_V_gene IGKV1D-42 2 OTTHUMG00000151573.4 +36898 chr2 HAVANA gene 90209873 90210529 532.0 + 0 ENSG00000242580.1 IG_V_gene IGKV1D-43 2 OTTHUMG00000151572.3 +36899 chr2 HAVANA gene 90220727 90221384 534.0 + 0 ENSG00000239819.2 IG_V_gene IGKV1D-8 2 OTTHUMG00000151570.5 +36900 chr2 HAVANA gene 90234812 90235370 384.0 + 0 ENSG00000228325.5 IG_V_gene IGKV3D-7 2 OTTHUMG00000184555.4 +36901 chr2 HAVANA gene 90309230 90309333 104.0 + 0 ENSG00000275490.1 unprocessed_pseudogene AC233263.2 2 OTTHUMG00000188274.1 +36902 chr2 HAVANA gene 90315366 90315836 347.0 - 0 ENSG00000270999.1 IG_V_pseudogene IGKV1OR2-118 1 OTTHUMG00000184560.1 pseudo_consens +36903 chr2 HAVANA gene 90359809 90360032 224.0 - 0 ENSG00000265897.2 processed_pseudogene AC233263.1 2 OTTHUMG00000188275.1 +36904 chr2 HAVANA gene 90365737 90367699 1963.0 + 0 ENSG00000281904.1 lincRNA AC233263.6 2 OTTHUMG00000189798.1 +36905 chr2 HAVANA gene 91578478 91578573 96.0 + 0 ENSG00000230964.1 processed_pseudogene AC233266.1 2 OTTHUMG00000155075.3 +36906 chr2 HAVANA gene 91580336 91580863 528.0 + 0 ENSG00000261600.1 lincRNA AC233266.2 2 OTTHUMG00000176044.2 +36907 chr2 HAVANA gene 91589494 91621421 1779.0 + 0 ENSG00000278131.1 unprocessed_pseudogene AC116050.1 2 OTTHUMG00000155071.3 +36908 chr2 HAVANA gene 91617160 91659972 3057.0 - 0 ENSG00000143429.10 transcribed_unprocessed_pseudogene LSP1P4 2 OTTHUMG00000155083.2 +36909 chr2 ENSEMBL gene 91674857 91674966 110.0 + 0 ENSG00000222835.1 rRNA_pseudogene RNA5SP100 3 +36910 chr2 HAVANA gene 91684447 91685884 1438.0 - 0 ENSG00000184303.5 processed_pseudogene DRD5P1 1 OTTHUMG00000155074.1 pseudo_consens +36911 chr2 HAVANA gene 91686102 91714745 1532.0 - 0 ENSG00000230572.5 transcribed_unprocessed_pseudogene AC027612.2 2 OTTHUMG00000155070.1 +36912 chr2 HAVANA gene 91723023 91723605 583.0 + 0 ENSG00000271627.1 processed_pseudogene AC027612.4 1 OTTHUMG00000184281.1 pseudo_consens +36913 chr2 HAVANA gene 91747940 91748986 1047.0 - 0 ENSG00000232531.3 processed_pseudogene AC027612.3 1 OTTHUMG00000150478.1 pseudo_consens +36914 chr2 HAVANA gene 91736726 91767439 2395.0 + 0 ENSG00000223703.1 unprocessed_pseudogene AC027612.1 2 OTTHUMG00000155080.1 +36915 chr2 HAVANA gene 91775944 91781169 532.0 + 0 ENSG00000236969.2 unprocessed_pseudogene GGT8P 2 OTTHUMG00000155086.2 +36916 chr2 HAVANA gene 91817771 91818248 354.0 + 0 ENSG00000235235.6 IG_V_pseudogene IGKV1OR2-1 1 OTTHUMG00000155081.2 pseudo_consens +36917 chr2 HAVANA gene 91840601 91843802 754.0 + 0 ENSG00000214330.4 unprocessed_pseudogene ABCD1P5 2 OTTHUMG00000155089.1 +36918 chr2 HAVANA gene 91859384 91859481 98.0 + 0 ENSG00000237085.2 processed_pseudogene AC127391.1 2 OTTHUMG00000155079.3 +36919 chr2 HAVANA gene 91877969 91880195 1829.0 + 0 ENSG00000227497.1 processed_pseudogene PABPC1P6 1 OTTHUMG00000155088.1 pseudo_consens +36920 chr2 HAVANA gene 91883076 91931714 1184.0 - 0 ENSG00000214329.7 transcribed_unprocessed_pseudogene SLC9B1P2 2 OTTHUMG00000155082.2 +36921 chr2 HAVANA gene 91940668 91942040 1373.0 + 0 ENSG00000226481.3 processed_pseudogene ACTR3BP2 1 OTTHUMG00000155085.1 pseudo_consens +36922 chr2 HAVANA gene 91957436 91963610 248.0 + 0 ENSG00000234898.1 unprocessed_pseudogene CHEK2P3 2 OTTHUMG00000155087.1 +36923 chr2 HAVANA gene 92006680 92007121 442.0 - 0 ENSG00000235147.1 processed_pseudogene AC128677.1 2 OTTHUMG00000155084.1 +36924 chr2 HAVANA gene 92034522 92035000 355.0 - 0 ENSG00000223816.5 unprocessed_pseudogene IGKV1OR2-2 1 OTTHUMG00000155090.2 pseudo_consens +36925 chr2 HAVANA gene 94575976 94587183 2028.0 - 0 ENSG00000261522.5 transcribed_unprocessed_pseudogene AL845331.3 2 OTTHUMG00000175551.1 +36926 chr2 HAVANA gene 94588522 94604573 1044.0 + 0 ENSG00000259916.1 protein_coding AL845331.2 2 OTTHUMG00000175552.2 +36927 chr2 HAVANA gene 94725674 94725935 262.0 - 0 ENSG00000237383.1 processed_pseudogene CNN2P11 2 OTTHUMG00000155140.1 +36928 chr2 HAVANA gene 94734655 94735844 1190.0 - 0 ENSG00000227265.2 processed_pseudogene AL845331.1 1 OTTHUMG00000155134.2 pseudo_consens +36929 chr2 HAVANA gene 94737337 94738249 913.0 + 0 ENSG00000213355.3 processed_pseudogene CNN2P8 1 OTTHUMG00000155130.1 pseudo_consens +36930 chr2 HAVANA gene 94750582 94751293 712.0 + 0 ENSG00000234837.1 processed_pseudogene AC073464.2 2 OTTHUMG00000155132.1 +36931 chr2 HAVANA gene 94759259 94760279 504.0 - 0 ENSG00000223564.1 unprocessed_pseudogene CYP4F32P 2 OTTHUMG00000155129.1 +36932 chr2 HAVANA gene 94760774 94761116 343.0 - 0 ENSG00000232502.1 processed_pseudogene AC073464.1 2 OTTHUMG00000155139.1 +36933 chr2 HAVANA gene 94786688 94787261 574.0 - 0 ENSG00000235571.1 processed_pseudogene SNX18P14 1 OTTHUMG00000155128.1 pseudo_consens +36934 chr2 ENSEMBL gene 94846533 94846639 107.0 - 0 ENSG00000212140.1 snRNA RNU6-1320P 3 +36935 chr2 HAVANA gene 94791103 94857282 8020.0 - 0 ENSG00000229089.8 transcribed_unprocessed_pseudogene ANKRD20A8P 2 OTTHUMG00000155138.4 +36936 chr2 HAVANA gene 94861362 94862667 1306.0 + 0 ENSG00000278631.1 processed_pseudogene AC097374.2 1 OTTHUMG00000187611.1 pseudo_consens +36937 chr2 HAVANA gene 94871433 94876829 2218.0 + 0 ENSG00000163060.7 protein_coding TEKT4 2 OTTHUMG00000130396.2 +36938 chr2 HAVANA gene 94899566 94900661 1096.0 - 0 ENSG00000237055.1 processed_pseudogene MTCO1P48 2 OTTHUMG00000155136.1 overlapping_locus +36939 chr2 HAVANA gene 94900990 94901602 613.0 + 0 ENSG00000232128.1 processed_pseudogene MTCO3P45 2 OTTHUMG00000155133.1 +36940 chr2 HAVANA gene 94912432 94912831 400.0 + 0 ENSG00000233158.1 processed_pseudogene RPS24P6 1 OTTHUMG00000155141.1 pseudo_consens +36941 chr2 HAVANA gene 94867486 94947341 7136.0 - 0 ENSG00000259848.8 transcribed_unprocessed_pseudogene AC097374.1 2 OTTHUMG00000155135.4 overlapping_locus +36942 chr2 HAVANA gene 94953161 94953593 354.0 - 0 ENSG00000231331.1 unprocessed_pseudogene AC103563.3 2 OTTHUMG00000155137.1 +36943 chr2 HAVANA gene 94961047 94961503 368.0 - 0 ENSG00000232594.1 unprocessed_pseudogene AC103563.4 2 OTTHUMG00000155164.1 +36944 chr2 HAVANA gene 94964473 94964836 364.0 - 0 ENSG00000233105.1 unprocessed_pseudogene AC103563.5 2 OTTHUMG00000155163.1 +36945 chr2 HAVANA gene 94971954 94972167 123.0 - 0 ENSG00000224585.1 unprocessed_pseudogene AC103563.1 2 OTTHUMG00000155152.1 +36946 chr2 HAVANA gene 94974544 94974838 295.0 - 0 ENSG00000233447.1 unprocessed_pseudogene AC103563.6 2 OTTHUMG00000155160.1 +36947 chr2 HAVANA gene 94991880 94994362 318.0 + 0 ENSG00000235186.1 unprocessed_pseudogene AC103563.8 2 OTTHUMG00000155167.1 +36948 chr2 ENSEMBL gene 95003545 95003843 299.0 - 0 ENSG00000277591.1 misc_RNA RN7SL575P 3 +36949 chr2 HAVANA gene 95025193 95026709 478.0 - 0 ENSG00000233850.1 antisense AC103563.7 2 OTTHUMG00000155157.1 +36950 chr2 HAVANA gene 95051395 95053176 597.0 - 0 ENSG00000231062.1 antisense AC103563.2 1 OTTHUMG00000155169.1 +36951 chr2 HAVANA gene 95025677 95053996 1457.0 + 0 ENSG00000172005.10 protein_coding MAL 2 OTTHUMG00000132011.4 +36952 chr2 HAVANA gene 95087207 95149434 6719.0 - 0 ENSG00000144029.11 protein_coding MRPS5 2 OTTHUMG00000130394.2 overlapping_locus +36953 chr2 HAVANA gene 95147330 95165413 6813.0 - 0 ENSG00000144026.11 protein_coding ZNF514 2 OTTHUMG00000130391.4 overlapping_locus +36954 chr2 HAVANA gene 95165432 95184317 3996.0 + 0 ENSG00000275111.4 protein_coding ZNF2 2 OTTHUMG00000155150.4 +36955 chr2 HAVANA gene 95196449 95197357 909.0 - 0 ENSG00000275768.1 unprocessed_pseudogene SLC2AXP1 1 OTTHUMG00000187613.1 pseudo_consens +36956 chr2 HAVANA gene 95207535 95259774 2304.0 + 0 ENSG00000233757.6 protein_coding AC092835.1 1 OTTHUMG00000155176.5 +36957 chr2 HAVANA gene 95274453 95291308 6063.0 + 0 ENSG00000155066.15 protein_coding PROM2 2 OTTHUMG00000130393.2 +36958 chr2 HAVANA gene 95368507 95368885 379.0 - 0 ENSG00000235129.1 processed_pseudogene FABP7P2 1 OTTHUMG00000155162.1 pseudo_consens +36959 chr2 HAVANA gene 95297304 95386083 7870.0 + 0 ENSG00000115041.12 protein_coding KCNIP3 2 OTTHUMG00000130392.4 +36960 chr2 HAVANA gene 95413456 95414296 217.0 - 0 ENSG00000248821.1 unprocessed_pseudogene AC009238.3 2 OTTHUMG00000155175.1 +36961 chr2 HAVANA gene 95402721 95416616 5665.0 + 0 ENSG00000115042.9 protein_coding FAHD2A 2 OTTHUMG00000130397.4 +36962 chr2 HAVANA gene 95434759 95435113 355.0 + 0 ENSG00000233275.1 processed_pseudogene AC009238.2 2 OTTHUMG00000155149.1 +36963 chr2 HAVANA gene 95436133 95436556 424.0 + 0 ENSG00000227120.1 processed_pseudogene AC009238.1 2 OTTHUMG00000155165.1 +36964 chr2 HAVANA gene 95450310 95451500 1191.0 - 0 ENSG00000204705.3 unprocessed_pseudogene UBTFL5 1 OTTHUMG00000155173.1 pseudo_consens +36965 chr2 HAVANA gene 95460144 95460336 193.0 - 0 ENSG00000277747.1 unprocessed_pseudogene AC133104.2 1 OTTHUMG00000187615.1 pseudo_consens +36966 chr2 HAVANA gene 95468863 95469778 218.0 - 0 ENSG00000234903.1 unprocessed_pseudogene AC133104.1 2 OTTHUMG00000155153.1 +36967 chr2 HAVANA gene 95476967 95484731 1668.0 - 0 ENSG00000144010.9 protein_coding TRIM43B 2 OTTHUMG00000155170.2 +36968 chr2 HAVANA gene 95485541 95485805 265.0 + 0 ENSG00000238162.1 processed_pseudogene AC009237.11 2 OTTHUMG00000155147.1 +36969 chr2 HAVANA gene 95486480 95488627 744.0 - 0 ENSG00000223917.1 unprocessed_pseudogene AC009237.1 2 OTTHUMG00000155159.1 +36970 chr2 HAVANA gene 95496022 95496531 510.0 - 0 ENSG00000237308.1 processed_pseudogene AC009237.10 2 OTTHUMG00000155166.1 +36971 chr2 HAVANA gene 95502791 95505059 284.0 + 0 ENSG00000224719.1 unprocessed_pseudogene AC009237.2 2 OTTHUMG00000155154.1 +36972 chr2 HAVANA gene 95514827 95520107 1371.0 + 0 ENSG00000226185.2 unprocessed_pseudogene TRIM64FP 2 OTTHUMG00000155177.3 +36973 chr2 HAVANA gene 95525109 95526702 1594.0 - 0 ENSG00000272913.1 lincRNA AC009237.14 2 OTTHUMG00000186024.1 +36974 chr2 HAVANA gene 95525345 95532405 4978.0 + 0 ENSG00000229689.3 transcribed_unprocessed_pseudogene AC009237.3 2 OTTHUMG00000155156.3 +36975 chr2 HAVANA gene 95536117 95536495 379.0 - 0 ENSG00000236431.1 processed_pseudogene AC009237.8 2 OTTHUMG00000155158.1 +36976 chr2 HAVANA gene 95537969 95538469 501.0 + 0 ENSG00000273305.1 lincRNA AC009237.15 2 OTTHUMG00000186025.1 +36977 chr2 HAVANA gene 95542730 95543230 501.0 - 0 ENSG00000233037.2 processed_pseudogene AC009237.5 2 OTTHUMG00000155172.2 +36978 chr2 HAVANA gene 95546531 95547545 1015.0 + 0 ENSG00000168992.4 unprocessed_pseudogene OR7E102P 1 OTTHUMG00000155151.1 pseudo_consens +36979 chr2 HAVANA gene 95574901 95580769 1317.0 + 0 ENSG00000232717.2 unprocessed_pseudogene TRIM51JP 2 OTTHUMG00000155155.2 +36980 chr2 HAVANA gene 95588149 95589253 506.0 + 0 ENSG00000274028.1 unprocessed_pseudogene AC009237.16 2 OTTHUMG00000187616.1 +36981 chr2 HAVANA gene 95590969 95591206 238.0 - 0 ENSG00000230083.1 processed_pseudogene AC009237.4 2 OTTHUMG00000155171.1 +36982 chr2 HAVANA gene 95592018 95599778 1682.0 + 0 ENSG00000144015.4 protein_coding TRIM43 2 OTTHUMG00000130401.1 +36983 chr2 HAVANA gene 95606924 95607152 229.0 + 0 ENSG00000236026.1 processed_pseudogene AC009237.7 2 OTTHUMG00000155174.1 overlapping_locus +36984 chr2 HAVANA gene 95607073 95616592 276.0 + 0 ENSG00000271003.1 unprocessed_pseudogene AC009237.13 1 OTTHUMG00000184279.1 pseudo_consens,overlapping_locus +36985 chr2 HAVANA gene 95616492 95617233 742.0 + 0 ENSG00000270193.1 processed_pseudogene AC009237.12 1 OTTHUMG00000184280.1 pseudo_consens,overlapping_locus +36986 chr2 HAVANA gene 95625213 95626236 1024.0 + 0 ENSG00000204699.4 unprocessed_pseudogene UBTFL3 1 OTTHUMG00000155161.2 pseudo_consens +36987 chr2 HAVANA gene 95633850 95636106 748.0 + 0 ENSG00000275497.1 unprocessed_pseudogene AC009237.17 2 OTTHUMG00000187618.1 +36988 chr2 HAVANA gene 95640181 95640604 424.0 - 0 ENSG00000235959.1 processed_pseudogene AC009237.6 2 OTTHUMG00000155168.1 +36989 chr2 HAVANA gene 95641634 95641980 347.0 - 0 ENSG00000236750.1 processed_pseudogene AC009237.9 2 OTTHUMG00000155148.1 +36990 chr2 HAVANA gene 95666084 95668715 1119.0 + 0 ENSG00000235584.2 lincRNA AC008268.1 2 OTTHUMG00000155185.2 +36991 chr2 HAVANA gene 95789654 95800166 2245.0 + 0 ENSG00000237510.7 transcribed_unprocessed_pseudogene GPAT2P1 2 OTTHUMG00000155187.1 +36992 chr2 HAVANA gene 95807118 95816215 2618.0 - 0 ENSG00000232931.5 lincRNA LINC00342 2 OTTHUMG00000155186.1 +36993 chr2 HAVANA gene 95836919 95991831 8574.0 - 0 ENSG00000174501.14 protein_coding ANKRD36C 2 OTTHUMG00000155211.2 +36994 chr2 ENSEMBL gene 96004563 96004850 288.0 - 0 ENSG00000275961.1 misc_RNA RN7SL210P 3 +36995 chr2 HAVANA gene 96010551 96023380 2140.0 + 0 ENSG00000231584.8 transcribed_unprocessed_pseudogene FAHD2CP 2 OTTHUMG00000155210.3 +36996 chr2 HAVANA gene 96021946 96039451 5684.0 - 0 ENSG00000186281.12 protein_coding GPAT2 1 OTTHUMG00000155208.2 +36997 chr2 HAVANA gene 96112875 96116245 3371.0 - 0 ENSG00000274286.1 protein_coding ADRA2B 2 OTTHUMG00000188276.1 +36998 chr2 HAVANA gene 96123850 96138436 1654.0 - 0 ENSG00000188886.3 protein_coding ASTL 2 OTTHUMG00000155212.2 +36999 chr2 HAVANA gene 96143166 96145440 1932.0 - 0 ENSG00000158050.4 protein_coding DUSP2 2 OTTHUMG00000130456.2 +37000 chr2 HAVANA gene 96145602 96147012 197.0 - 0 ENSG00000228873.1 lincRNA AC012307.1 2 OTTHUMG00000155213.1 +37001 chr2 HAVANA gene 96184859 96208825 4414.0 - 0 ENSG00000084090.13 protein_coding STARD7 1 OTTHUMG00000130457.4 +37002 chr2 HAVANA gene 96208416 96242621 2349.0 + 0 ENSG00000204685.6 processed_transcript STARD7-AS1 1 OTTHUMG00000155209.1 +37003 chr2 HAVANA gene 96248516 96265994 6367.0 - 0 ENSG00000135956.8 protein_coding TMEM127 1 OTTHUMG00000130454.4 +37004 chr2 HAVANA gene 96266132 96273349 4031.0 + 0 ENSG00000144021.2 protein_coding CIAO1 2 OTTHUMG00000130452.2 +37005 chr2 HAVANA gene 96274336 96305515 10926.0 - 0 ENSG00000144028.14 protein_coding SNRNP200 2 OTTHUMG00000130455.5 +37006 chr2 HAVANA gene 96307263 96321731 740.0 - 0 ENSG00000230747.1 antisense AC021188.1 1 OTTHUMG00000155228.1 +37007 chr2 HAVANA gene 96325331 96330517 4652.0 + 0 ENSG00000198885.9 protein_coding ITPRIPL1 2 OTTHUMG00000155230.4 +37008 chr2 HAVANA gene 96335787 96373845 3278.0 + 0 ENSG00000121152.9 protein_coding NCAPH 1 OTTHUMG00000130451.5 +37009 chr2 HAVANA gene 96497643 96508109 2497.0 - 0 ENSG00000163121.9 protein_coding NEURL3 2 OTTHUMG00000128645.7 +37010 chr2 HAVANA gene 96527940 96532306 440.0 - 0 ENSG00000235480.1 antisense AC013270.1 1 OTTHUMG00000156116.1 +37011 chr2 HAVANA gene 96536743 96552638 3565.0 + 0 ENSG00000196843.15 protein_coding ARID5A 1 OTTHUMG00000155229.5 +37012 chr2 HAVANA gene 96593170 96642787 9015.0 - 0 ENSG00000114982.17 protein_coding KANSL3 1 OTTHUMG00000155249.5 +37013 chr2 HAVANA gene 96642737 96704887 10475.0 + 0 ENSG00000249715.11 protein_coding FER1L5 1 OTTHUMG00000154929.9 +37014 chr2 HAVANA gene 96705929 96740064 2709.0 - 0 ENSG00000114988.11 protein_coding LMAN2L 2 OTTHUMG00000130453.2 +37015 chr2 ENSEMBL gene 96798278 96798353 76.0 + 0 ENSG00000264157.3 miRNA MIR3127 3 +37016 chr2 HAVANA gene 96760902 96811891 5105.0 + 0 ENSG00000158158.11 protein_coding CNNM4 2 OTTHUMG00000130532.2 ncRNA_host +37017 chr2 HAVANA gene 96812239 96813657 415.0 - 0 ENSG00000273265.1 lincRNA CNNM3-DT 2 OTTHUMG00000186027.1 +37018 chr2 HAVANA gene 96816245 96833911 4416.0 + 0 ENSG00000168763.15 protein_coding CNNM3 2 OTTHUMG00000130531.3 +37019 chr2 HAVANA gene 96824526 96857934 4116.0 - 0 ENSG00000163126.14 protein_coding ANKRD23 2 OTTHUMG00000130534.3 overlapping_locus +37020 chr2 HAVANA gene 96836611 96858095 5330.0 - 0 ENSG00000213337.8 protein_coding ANKRD39 2 OTTHUMG00000130530.2 overlapping_locus +37021 chr2 HAVANA gene 96859716 96870757 6157.0 - 0 ENSG00000168758.10 protein_coding SEMA4C 2 OTTHUMG00000130535.3 +37022 chr2 ENSEMBL gene 96938923 96939203 281.0 + 0 ENSG00000274206.1 misc_RNA RF00017 3 +37023 chr2 ENSEMBL gene 96956708 96956815 108.0 - 0 ENSG00000252845.1 rRNA_pseudogene RNA5SP101 3 +37024 chr2 HAVANA gene 96875882 96986592 3545.0 - 0 ENSG00000168754.14 protein_coding FAM178B 2 OTTHUMG00000155257.4 +37025 chr2 HAVANA gene 97000436 97001593 484.0 - 0 ENSG00000275094.1 unprocessed_pseudogene AC079395.3 1 OTTHUMG00000187620.1 pseudo_consens +37026 chr2 HAVANA gene 97008368 97009104 737.0 - 0 ENSG00000273634.1 processed_pseudogene AC079395.2 1 OTTHUMG00000187621.1 pseudo_consens +37027 chr2 HAVANA gene 97018343 97018604 262.0 - 0 ENSG00000248134.1 unprocessed_pseudogene AC079395.1 1 OTTHUMG00000155333.1 pseudo_consens +37028 chr2 HAVANA gene 97025981 97031636 1028.0 - 0 ENSG00000144188.9 unprocessed_pseudogene TRIM43CP 1 OTTHUMG00000155327.1 pseudo_consens +37029 chr2 HAVANA gene 97034442 97034706 265.0 + 0 ENSG00000230343.1 unprocessed_pseudogene AC018892.1 2 OTTHUMG00000155328.1 +37030 chr2 HAVANA gene 97035461 97037549 693.0 - 0 ENSG00000236847.1 unprocessed_pseudogene AC018892.2 2 OTTHUMG00000155329.1 +37031 chr2 HAVANA gene 97046588 97046891 304.0 + 0 ENSG00000270748.1 IG_V_pseudogene IGKV2OR2-1 1 OTTHUMG00000155332.2 pseudo_consens +37032 chr2 HAVANA gene 97050729 97051028 300.0 + 0 ENSG00000271402.1 IG_V_pseudogene IGKV2OR2-2 1 OTTHUMG00000155326.2 pseudo_consens +37033 chr2 HAVANA gene 97060128 97060415 288.0 + 0 ENSG00000204670.7 IG_V_pseudogene IGKV1OR2-3 1 OTTHUMG00000155330.2 pseudo_consens +37034 chr2 HAVANA gene 97081098 97083249 863.0 + 0 ENSG00000188383.8 unprocessed_pseudogene GPAT2P2 2 OTTHUMG00000155331.1 +37035 chr2 HAVANA gene 97083583 97094882 2662.0 - 0 ENSG00000144199.11 protein_coding FAHD2B 2 OTTHUMG00000130533.2 +37036 chr2 HAVANA gene 97094935 97097433 2499.0 + 0 ENSG00000279791.1 TEC AC018892.3 2 OTTHUMG00000176108.1 +37037 chr2 ENSEMBL gene 97100587 97100874 288.0 + 0 ENSG00000275655.1 misc_RNA RN7SL313P 3 +37038 chr2 HAVANA gene 97113496 97250199 9479.0 + 0 ENSG00000135976.18 protein_coding ANKRD36 1 OTTHUMG00000155256.7 +37039 chr2 HAVANA gene 97281904 97291780 3067.0 + 0 ENSG00000277701.4 lincRNA AC159540.2 2 OTTHUMG00000188202.3 +37040 chr2 HAVANA gene 97301729 97304151 555.0 + 0 ENSG00000237837.1 lincRNA AC159540.1 2 OTTHUMG00000152992.1 +37041 chr2 HAVANA gene 97322137 97322423 287.0 - 0 ENSG00000271351.1 IG_V_pseudogene IGKV1OR2-9 1 OTTHUMG00000184517.1 pseudo_consens +37042 chr2 HAVANA gene 97331533 97331843 311.0 - 0 ENSG00000276050.1 IG_V_pseudogene IGKV2OR2-10 1 OTTHUMG00000188278.1 pseudo_consens +37043 chr2 HAVANA gene 97335671 97335974 304.0 - 0 ENSG00000271015.1 IG_V_pseudogene IGKV2OR2-7D 1 OTTHUMG00000184526.1 pseudo_consens +37044 chr2 HAVANA gene 97348899 97349179 281.0 + 0 ENSG00000270252.1 IG_V_pseudogene IGKV3OR2-5 1 OTTHUMG00000184519.1 pseudo_consens +37045 chr2 HAVANA gene 97355059 97355335 277.0 + 0 ENSG00000271569.1 IG_V_pseudogene IGKV1OR2-6 1 OTTHUMG00000184513.1 pseudo_consens +37046 chr2 HAVANA gene 97372532 97372835 304.0 + 0 ENSG00000270450.1 IG_V_pseudogene IGKV2OR2-7 1 OTTHUMG00000184523.1 pseudo_consens +37047 chr2 HAVANA gene 97376674 97376973 300.0 + 0 ENSG00000278537.1 IG_V_pseudogene IGKV2OR2-8 1 OTTHUMG00000188277.1 pseudo_consens +37048 chr2 HAVANA gene 97386082 97386368 287.0 + 0 ENSG00000270187.1 IG_V_pseudogene IGKV1OR2-11 1 OTTHUMG00000184518.1 pseudo_consens +37049 chr2 HAVANA gene 97416165 97433527 5278.0 - 0 ENSG00000230606.10 lincRNA AC092683.1 1 OTTHUMG00000152989.8 +37050 chr2 HAVANA gene 97421075 97434847 1295.0 + 0 ENSG00000278766.2 lincRNA AC092683.2 2 OTTHUMG00000153001.5 +37051 chr2 HAVANA gene 97523949 97524976 1028.0 - 0 ENSG00000235833.1 processed_pseudogene AC017099.1 2 OTTHUMG00000153013.1 overlapping_locus +37052 chr2 HAVANA gene 97492663 97589965 6771.0 - 0 ENSG00000196912.12 protein_coding ANKRD36B 2 OTTHUMG00000130547.9 overlapping_locus +37053 chr2 HAVANA gene 97636780 97637803 1024.0 - 0 ENSG00000228970.6 unprocessed_pseudogene UBTFL6 1 OTTHUMG00000153012.2 pseudo_consens +37054 chr2 HAVANA gene 97646040 97648383 1441.0 + 0 ENSG00000135940.6 protein_coding COX5B 2 OTTHUMG00000130548.2 +37055 chr2 HAVANA gene 97655963 97664107 2892.0 - 0 ENSG00000115073.7 protein_coding ACTR1B 2 OTTHUMG00000130549.4 +37056 chr2 ENSEMBL gene 97664591 97664731 141.0 - 0 ENSG00000201806.1 snRNA RNU4-8P 3 +37057 chr2 HAVANA gene 97664217 97703064 6501.0 + 0 ENSG00000228486.10 protein_coding C2orf92 1 OTTHUMG00000153062.10 +37058 chr2 HAVANA gene 97713560 97739862 5111.0 + 0 ENSG00000115085.13 protein_coding ZAP70 2 OTTHUMG00000153060.4 +37059 chr2 HAVANA gene 97827248 97827545 298.0 + 0 ENSG00000235734.4 processed_pseudogene HMGN1P36 2 OTTHUMG00000153063.2 +37060 chr2 ENSEMBL gene 97913054 97913117 64.0 - 0 ENSG00000238719.1 snRNA RNU7-96P 3 +37061 chr2 HAVANA gene 97756333 97995891 12985.0 - 0 ENSG00000075568.16 protein_coding TMEM131 1 OTTHUMG00000153061.9 ncRNA_host +37062 chr2 HAVANA gene 98206151 98207724 1574.0 + 0 ENSG00000231635.1 processed_pseudogene ATP5F1BP1 1 OTTHUMG00000153103.1 pseudo_consens,overlapping_locus +37063 chr2 HAVANA gene 98087116 98313299 8307.0 + 0 ENSG00000168658.18 protein_coding VWA3B 2 OTTHUMG00000153104.4 overlapping_locus +37064 chr2 HAVANA gene 98346995 98351140 541.0 + 0 ENSG00000227987.1 sense_intronic AC092675.2 2 OTTHUMG00000153105.1 overlapping_locus +37065 chr2 HAVANA gene 98331389 98356005 1164.0 - 0 ENSG00000222000.7 antisense AC092675.1 1 OTTHUMG00000153102.1 +37066 chr2 HAVANA gene 98346155 98398601 4378.0 + 0 ENSG00000144191.11 protein_coding CNGA3 1 OTTHUMG00000130561.3 overlapping_locus +37067 chr2 HAVANA gene 98444854 98594390 13187.0 + 0 ENSG00000040933.15 protein_coding INPP4A 2 OTTHUMG00000153106.4 +37068 chr2 HAVANA gene 98599310 98608515 2760.0 - 0 ENSG00000183513.8 protein_coding COA5 2 OTTHUMG00000153101.3 +37069 chr2 HAVANA gene 98608579 98618515 2230.0 + 0 ENSG00000115446.11 protein_coding UNC50 1 OTTHUMG00000130562.2 +37070 chr2 HAVANA gene 98694109 98695490 1382.0 + 0 ENSG00000236564.1 processed_pseudogene YWHAQP5 1 OTTHUMG00000153115.1 pseudo_consens +37071 chr2 HAVANA gene 98619106 98731126 9630.0 - 0 ENSG00000071073.12 protein_coding MGAT4A 2 OTTHUMG00000130563.4 +37072 chr2 HAVANA gene 98761938 98772920 2101.0 - 0 ENSG00000226791.6 lincRNA AC109826.1 1 OTTHUMG00000153173.4 +37073 chr2 ENSEMBL gene 98782410 98782548 139.0 + 0 ENSG00000201070.1 snRNA RNU4-84P 3 +37074 chr2 ENSEMBL gene 98840675 98840736 62.0 - 0 ENSG00000238830.1 snRNA RNU7-46P 3 +37075 chr2 HAVANA gene 98793846 98936259 4705.0 - 0 ENSG00000196872.11 protein_coding KIAA1211L 1 OTTHUMG00000153171.9 ncRNA_host +37076 chr2 HAVANA gene 99102018 99102752 735.0 + 0 ENSG00000231822.1 processed_pseudogene AC019097.1 1 OTTHUMG00000153174.1 pseudo_consens +37077 chr2 HAVANA gene 99141485 99151487 2098.0 + 0 ENSG00000273045.6 protein_coding C2orf15 2 OTTHUMG00000130635.5 overlapping_locus +37078 chr2 HAVANA gene 98997261 99154964 7375.0 - 0 ENSG00000135951.14 protein_coding TSGA10 2 OTTHUMG00000130637.3 +37079 chr2 HAVANA gene 99154955 99163157 2279.0 + 0 ENSG00000144182.16 protein_coding LIPT1 2 OTTHUMG00000130640.3 overlapping_locus +37080 chr2 HAVANA gene 99161427 99181058 4305.0 - 0 ENSG00000158411.11 protein_coding MITD1 2 OTTHUMG00000130638.6 +37081 chr2 HAVANA gene 99154998 99195298 669.0 + 0 ENSG00000273155.1 protein_coding AC092587.1 2 OTTHUMG00000186443.1 overlapping_locus +37082 chr2 HAVANA gene 99181079 99197626 2898.0 + 0 ENSG00000185414.19 protein_coding MRPL30 2 OTTHUMG00000130642.2 overlapping_locus +37083 chr2 HAVANA gene 99242246 99255282 1206.0 - 0 ENSG00000185674.9 protein_coding LYG2 2 OTTHUMG00000130643.3 +37084 chr2 HAVANA gene 99284238 99304742 1093.0 - 0 ENSG00000144214.9 protein_coding LYG1 2 OTTHUMG00000130639.2 +37085 chr2 HAVANA gene 99141485 99322741 1993.0 + 0 ENSG00000241962.9 protein_coding AC079447.1 2 OTTHUMG00000186049.1 overlapping_locus +37086 chr2 HAVANA gene 99318982 99340702 2816.0 - 0 ENSG00000115514.11 protein_coding TXNDC9 1 OTTHUMG00000130641.6 +37087 chr2 HAVANA gene 99337353 99401326 7883.0 + 0 ENSG00000158417.10 protein_coding EIF5B 2 OTTHUMG00000153242.2 +37088 chr2 HAVANA gene 99405218 99405843 626.0 + 0 ENSG00000273306.1 antisense AC018690.1 2 OTTHUMG00000186029.1 +37089 chr2 HAVANA gene 99400475 99490035 7769.0 - 0 ENSG00000135945.9 protein_coding REV1 2 OTTHUMG00000130636.3 +37090 chr2 HAVANA gene 100104919 100107504 2586.0 + 0 ENSG00000230393.1 antisense AC092667.1 2 OTTHUMG00000153210.1 +37091 chr2 HAVANA gene 99545419 100142739 12737.0 - 0 ENSG00000144218.18 protein_coding AFF3 2 OTTHUMG00000153011.8 +37092 chr2 HAVANA gene 100208254 100251484 3370.0 + 0 ENSG00000232084.5 lincRNA LINC01104 2 OTTHUMG00000153132.1 +37093 chr2 HAVANA gene 100273291 100322733 13933.0 - 0 ENSG00000170500.12 protein_coding LONRF2 2 OTTHUMG00000130668.3 +37094 chr2 HAVANA gene 100370255 100370545 291.0 - 0 ENSG00000269383.2 processed_pseudogene AC012493.2 1 OTTHUMG00000187107.1 pseudo_consens +37095 chr2 HAVANA gene 100377421 100377532 112.0 + 0 ENSG00000270699.1 processed_pseudogene AC012493.3 1 OTTHUMG00000184277.1 pseudo_consens +37096 chr2 HAVANA gene 100391860 100417656 4487.0 - 0 ENSG00000115526.10 protein_coding CHST10 2 OTTHUMG00000130669.10 +37097 chr2 HAVANA gene 100425348 100426107 760.0 + 0 ENSG00000238029.1 processed_pseudogene AC012493.1 1 OTTHUMG00000153140.1 pseudo_consens +37098 chr2 HAVANA gene 100470482 100483280 485.0 + 0 ENSG00000204640.1 protein_coding NMS 2 OTTHUMG00000153142.1 +37099 chr2 HAVANA gene 100509277 100509612 336.0 + 0 ENSG00000204637.4 processed_pseudogene AC068538.1 1 OTTHUMG00000153139.2 pseudo_consens +37100 chr2 HAVANA gene 100562690 100576735 1831.0 + 0 ENSG00000115539.13 protein_coding PDCL3 1 OTTHUMG00000153141.4 +37101 chr2 HAVANA gene 100591150 100591324 175.0 - 0 ENSG00000227259.2 processed_pseudogene HMGN2P22 2 OTTHUMG00000153161.2 +37102 chr2 HAVANA gene 100607028 100609358 654.0 + 0 ENSG00000234988.1 lincRNA LINC01849 2 OTTHUMG00000153149.1 +37103 chr2 HAVANA gene 100660199 100660678 480.0 + 0 ENSG00000226034.2 processed_pseudogene NANOGNBP1 1 OTTHUMG00000153162.2 pseudo_consens +37104 chr2 HAVANA gene 100669892 100676038 562.0 - 0 ENSG00000234169.1 lincRNA LINC01868 2 OTTHUMG00000153160.1 +37105 chr2 HAVANA gene 100722221 100722882 236.0 - 0 ENSG00000228488.1 lincRNA AC092168.1 2 OTTHUMG00000153159.1 +37106 chr2 HAVANA gene 100822661 100847220 717.0 + 0 ENSG00000232034.1 sense_intronic AC092168.2 2 OTTHUMG00000153029.1 overlapping_locus +37107 chr2 HAVANA gene 100972648 100977161 939.0 - 0 ENSG00000230140.5 antisense AC016738.2 1 OTTHUMG00000153028.2 +37108 chr2 HAVANA gene 100820152 100996829 12491.0 + 0 ENSG00000170485.16 protein_coding NPAS2 1 OTTHUMG00000130675.7 overlapping_locus +37109 chr2 HAVANA gene 100993676 101002244 3485.0 - 0 ENSG00000223947.1 antisense AC016738.1 2 OTTHUMG00000153031.1 +37110 chr2 HAVANA gene 101001715 101024032 5791.0 + 0 ENSG00000071082.10 protein_coding RPL31 1 OTTHUMG00000130687.7 +37111 chr2 HAVANA gene 101068378 101068656 279.0 + 0 ENSG00000271532.1 processed_pseudogene BBIP1P1 1 OTTHUMG00000184265.1 pseudo_consens +37112 chr2 HAVANA gene 101151660 101155412 2478.0 + 0 ENSG00000272902.2 lincRNA TBC1D8-AS1 2 OTTHUMG00000186030.2 +37113 chr2 HAVANA gene 101007617 101252866 6030.0 - 0 ENSG00000204634.12 protein_coding TBC1D8 2 OTTHUMG00000153040.2 +37114 chr2 HAVANA gene 101252802 101270316 2786.0 + 0 ENSG00000158435.7 protein_coding CNOT11 2 OTTHUMG00000130686.2 +37115 chr2 ENSEMBL gene 101272936 101273049 114.0 - 0 ENSG00000212283.1 snoRNA SNORD89 3 +37116 chr2 HAVANA gene 101271219 101308701 4836.0 - 0 ENSG00000163162.8 protein_coding RNF149 1 OTTHUMG00000130685.2 ncRNA_host +37117 chr2 ENSEMBL gene 101309450 101309534 85.0 + 0 ENSG00000264857.1 miRNA MIR5696 3 +37118 chr2 HAVANA gene 101375587 101376055 469.0 + 0 ENSG00000226058.1 processed_pseudogene AC092570.1 1 OTTHUMG00000155385.2 pseudo_consens +37119 chr2 HAVANA gene 101345551 101387595 7150.0 - 0 ENSG00000175874.9 protein_coding CREG2 2 OTTHUMG00000130692.3 +37120 chr2 HAVANA gene 101397361 101474703 2551.0 - 0 ENSG00000196460.13 protein_coding RFX8 2 OTTHUMG00000130693.6 +37121 chr2 HAVANA gene 101479390 101486822 390.0 + 0 ENSG00000223826.1 lincRNA LINC01870 1 OTTHUMG00000155390.1 +37122 chr2 HAVANA gene 101509530 101510222 693.0 - 0 ENSG00000237549.1 processed_pseudogene AC092570.3 1 OTTHUMG00000155389.1 pseudo_consens +37123 chr2 HAVANA gene 101520834 101521976 1143.0 - 0 ENSG00000232556.1 processed_pseudogene AC092570.2 1 OTTHUMG00000155388.1 pseudo_consens +37124 chr2 HAVANA gene 101696850 101894689 11961.0 + 0 ENSG00000071054.16 protein_coding MAP4K4 2 OTTHUMG00000155394.5 +37125 chr2 HAVANA gene 101962056 101987167 3841.0 + 0 ENSG00000281162.2 lincRNA LINC01127 2 OTTHUMG00000189566.1 +37126 chr2 HAVANA gene 101991844 102028544 3073.0 + 0 ENSG00000115590.13 protein_coding IL1R2 2 OTTHUMG00000130695.2 +37127 chr2 HAVANA gene 102064544 102179874 7083.0 + 0 ENSG00000115594.11 protein_coding IL1R1 1 OTTHUMG00000130783.5 +37128 chr2 HAVANA gene 102172621 102182108 382.0 - 0 ENSG00000226925.1 antisense IL1R1-AS1 2 OTTHUMG00000153435.1 +37129 chr2 HAVANA gene 102186973 102240002 2644.0 + 0 ENSG00000115598.9 protein_coding IL1RL2 2 OTTHUMG00000130776.3 +37130 chr2 HAVANA gene 102249857 102250255 399.0 - 0 ENSG00000205716.4 processed_pseudogene FAM183DP 1 OTTHUMG00000153041.1 pseudo_consens +37131 chr2 HAVANA gene 102311502 102352037 5746.0 + 0 ENSG00000115602.16 protein_coding IL1RL1 2 OTTHUMG00000130782.3 overlapping_locus +37132 chr2 HAVANA gene 102311529 102398775 4353.0 + 0 ENSG00000115604.10 protein_coding IL18R1 2 OTTHUMG00000130780.5 overlapping_locus +37133 chr2 HAVANA gene 102411243 102412108 866.0 + 0 ENSG00000236785.1 processed_pseudogene SDR42E1P5 1 OTTHUMG00000153095.1 pseudo_consens +37134 chr2 ENSEMBL gene 102432289 102432366 78.0 + 0 ENSG00000264764.1 miRNA MIR4772 3 +37135 chr2 HAVANA gene 102433957 102435340 1200.0 + 0 ENSG00000236525.1 sense_intronic AC007278.2 2 OTTHUMG00000153098.1 overlapping_locus +37136 chr2 HAVANA gene 102438713 102440475 1327.0 + 0 ENSG00000234389.1 sense_intronic AC007278.1 2 OTTHUMG00000153092.1 overlapping_locus +37137 chr2 HAVANA gene 102418689 102452565 2966.0 + 0 ENSG00000115607.9 protein_coding IL18RAP 1 OTTHUMG00000130777.3 ncRNA_host,overlapping_locus +37138 chr2 HAVANA gene 102473303 102533972 4478.0 + 0 ENSG00000180251.4 protein_coding SLC9A4 2 OTTHUMG00000153093.1 +37139 chr2 HAVANA gene 102619707 102711318 5984.0 + 0 ENSG00000115616.2 protein_coding SLC9A2 2 OTTHUMG00000130778.2 +37140 chr2 HAVANA gene 102715840 102736888 4367.0 - 0 ENSG00000135953.10 protein_coding MFSD9 1 OTTHUMG00000130781.3 +37141 chr2 HAVANA gene 102873339 102895722 709.0 - 0 ENSG00000277527.1 lincRNA LINC01796 2 OTTHUMG00000153096.2 +37142 chr2 HAVANA gene 102967408 102984429 437.0 - 0 ENSG00000224095.1 lincRNA LINC01935 2 OTTHUMG00000153097.1 +37143 chr2 HAVANA gene 102987323 102988565 549.0 + 0 ENSG00000227680.1 lincRNA AC108051.1 1 OTTHUMG00000153094.1 +37144 chr2 HAVANA gene 102736905 103019900 6071.0 + 0 ENSG00000170417.15 protein_coding TMEM182 1 OTTHUMG00000130779.5 +37145 chr2 HAVANA gene 103109759 103176260 638.0 - 0 ENSG00000229209.1 lincRNA AC073987.1 2 OTTHUMG00000153111.1 +37146 chr2 HAVANA gene 103275904 103276138 235.0 + 0 ENSG00000227623.1 processed_pseudogene AC010881.1 2 OTTHUMG00000153112.1 +37147 chr2 HAVANA gene 103494241 103495842 1284.0 + 0 ENSG00000236596.1 processed_pseudogene AC092568.1 1 OTTHUMG00000153113.2 pseudo_consens +37148 chr2 HAVANA gene 103527620 103529261 1319.0 + 0 ENSG00000221849.2 processed_pseudogene AC018880.1 2 OTTHUMG00000153110.1 +37149 chr2 HAVANA gene 103623630 103623830 201.0 + 0 ENSG00000231723.1 processed_pseudogene AC018880.2 2 OTTHUMG00000153114.1 +37150 chr2 HAVANA gene 103865746 103869688 545.0 - 0 ENSG00000236141.1 lincRNA AC013727.2 1 OTTHUMG00000153043.1 overlapping_locus +37151 chr2 HAVANA gene 103856659 103880209 1221.0 - 0 ENSG00000232597.5 lincRNA AC013727.1 2 OTTHUMG00000153045.2 overlapping_locus +37152 chr2 ENSEMBL gene 103953098 103953284 187.0 - 0 ENSG00000273515.1 misc_RNA RF02091 3 +37153 chr2 HAVANA gene 103874310 104077778 2479.0 + 0 ENSG00000256637.6 lincRNA LINC01965 2 OTTHUMG00000167762.3 +37154 chr2 HAVANA gene 104125268 104147229 529.0 - 0 ENSG00000228968.1 lincRNA AC096554.1 1 OTTHUMG00000153044.1 +37155 chr2 HAVANA gene 104395002 104396280 1279.0 - 0 ENSG00000233955.1 processed_pseudogene AHCYP3 1 OTTHUMG00000153048.1 pseudo_consens +37156 chr2 HAVANA gene 104412227 104414008 493.0 - 0 ENSG00000225765.1 lincRNA LINC01831 1 OTTHUMG00000153049.1 +37157 chr2 HAVANA gene 104411201 104415612 471.0 + 0 ENSG00000227157.1 lincRNA AC068535.1 1 OTTHUMG00000153047.1 +37158 chr2 HAVANA gene 104488458 104510509 1457.0 - 0 ENSG00000234781.2 lincRNA LINC01103 2 OTTHUMG00000153051.2 +37159 chr2 HAVANA gene 104433267 104520832 5098.0 + 0 ENSG00000235597.1 lincRNA LINC01102 2 OTTHUMG00000153050.1 +37160 chr2 HAVANA gene 104580821 104581890 437.0 - 0 ENSG00000231626.1 lincRNA AC013402.2 1 OTTHUMG00000153056.1 +37161 chr2 HAVANA gene 104583152 104585354 451.0 + 0 ENSG00000236109.1 lincRNA AC013402.3 1 OTTHUMG00000153055.1 +37162 chr2 HAVANA gene 104659337 104664837 561.0 + 0 ENSG00000230690.1 lincRNA AC013402.1 1 OTTHUMG00000153057.1 +37163 chr2 HAVANA gene 104678223 104678673 451.0 + 0 ENSG00000225669.1 processed_pseudogene RPL23AP27 1 OTTHUMG00000153053.2 pseudo_consens +37164 chr2 HAVANA gene 104703758 104705509 709.0 + 0 ENSG00000228528.1 lincRNA AC068057.1 2 OTTHUMG00000153054.1 +37165 chr2 HAVANA gene 104706612 104707506 895.0 + 0 ENSG00000279904.1 TEC AC068057.2 2 OTTHUMG00000176113.1 +37166 chr2 ENSEMBL gene 104733234 104733362 129.0 + 0 ENSG00000207249.1 snoRNA RF00139 3 +37167 chr2 HAVANA gene 104746638 104757719 3751.0 - 0 ENSG00000234177.5 lincRNA LINC01114 2 OTTHUMG00000153066.1 +37168 chr2 HAVANA gene 104771282 104771885 604.0 + 0 ENSG00000213301.2 processed_pseudogene HMGB3P11 1 OTTHUMG00000153069.1 pseudo_consens +37169 chr2 HAVANA gene 104807572 104853183 844.0 - 0 ENSG00000233639.5 processed_transcript PANTR1 2 OTTHUMG00000153065.1 +37170 chr2 HAVANA gene 104855511 104858574 3064.0 + 0 ENSG00000198914.3 protein_coding POU3F3 2 OTTHUMG00000153067.3 overlapping_locus,retrogene +37171 chr2 HAVANA gene 104865407 104867496 327.0 - 0 ENSG00000239587.1 antisense AC018730.1 2 OTTHUMG00000153068.1 overlapping_locus +37172 chr2 HAVANA gene 104865497 104872595 3351.0 - 0 ENSG00000229743.2 processed_transcript LINC01159 2 OTTHUMG00000153064.2 overlapping_locus +37173 chr2 HAVANA gene 104853285 104926052 443.0 + 0 ENSG00000269707.1 sense_overlapping AC018730.2 2 OTTHUMG00000182993.1 overlapping_locus +37174 chr2 HAVANA gene 104936241 105038496 642.0 - 0 ENSG00000224509.2 antisense AC010884.1 1 OTTHUMG00000153077.3 +37175 chr2 HAVANA gene 105037983 105099960 1915.0 + 0 ENSG00000135972.8 protein_coding MRPS9 2 OTTHUMG00000130807.2 +37176 chr2 HAVANA gene 105097052 105102944 609.0 - 0 ENSG00000231851.5 antisense UTAT33 1 OTTHUMG00000153078.1 +37177 chr2 HAVANA gene 105144113 105145424 1009.0 + 0 ENSG00000226508.1 lincRNA LINC01918 1 OTTHUMG00000153079.1 +37178 chr2 HAVANA gene 105241743 105243049 1307.0 + 0 ENSG00000135973.2 protein_coding GPR45 2 OTTHUMG00000130805.1 +37179 chr2 HAVANA gene 105249404 105249794 391.0 - 0 ENSG00000272861.1 lincRNA AC012360.2 2 OTTHUMG00000186031.1 +37180 chr2 HAVANA gene 105264391 105330034 6005.0 - 0 ENSG00000135966.12 protein_coding TGFBRAP1 2 OTTHUMG00000130809.2 +37181 chr2 HAVANA gene 105324210 105330529 674.0 + 0 ENSG00000235319.1 lincRNA AC012360.1 1 OTTHUMG00000153107.1 +37182 chr2 HAVANA gene 105334027 105337475 3449.0 - 0 ENSG00000272994.1 lincRNA AC012360.3 2 OTTHUMG00000186032.1 +37183 chr2 HAVANA gene 105337359 105349211 4768.0 + 0 ENSG00000135974.9 protein_coding C2orf49 2 OTTHUMG00000130808.2 +37184 chr2 HAVANA gene 105363038 105378839 2609.0 + 0 ENSG00000238273.3 antisense AC108058.1 2 OTTHUMG00000153109.2 +37185 chr2 HAVANA gene 105357712 105438513 6626.0 - 0 ENSG00000115641.18 protein_coding FHL2 2 OTTHUMG00000153120.5 +37186 chr2 HAVANA gene 105846534 105857177 2166.0 - 0 ENSG00000235522.6 antisense AC010978.1 2 OTTHUMG00000153117.4 +37187 chr2 HAVANA gene 105744897 105894274 2990.0 + 0 ENSG00000071051.13 protein_coding NCK2 2 OTTHUMG00000153116.3 +37188 chr2 HAVANA gene 105959084 105962006 491.0 - 0 ENSG00000234162.1 lincRNA AC009505.1 1 OTTHUMG00000153152.2 +37189 chr2 HAVANA gene 106063246 106078159 1741.0 + 0 ENSG00000119147.9 protein_coding C2orf40 1 OTTHUMG00000130921.3 +37190 chr2 HAVANA gene 106179542 106183797 433.0 + 0 ENSG00000233339.1 antisense AC018878.1 2 OTTHUMG00000153153.1 +37191 chr2 HAVANA gene 106093303 106194339 7023.0 - 0 ENSG00000115652.14 protein_coding UXS1 2 OTTHUMG00000153150.3 +37192 chr2 HAVANA gene 106207394 106208115 722.0 + 0 ENSG00000273595.1 processed_pseudogene AC092106.2 2 OTTHUMG00000187676.1 +37193 chr2 HAVANA gene 106247369 106247741 373.0 + 0 ENSG00000213295.3 processed_pseudogene RPL22P10 1 OTTHUMG00000153154.1 pseudo_consens +37194 chr2 HAVANA gene 106253231 106253717 487.0 - 0 ENSG00000224061.1 processed_pseudogene AC092106.1 1 OTTHUMG00000153151.1 pseudo_consens +37195 chr2 HAVANA gene 106288803 106289053 251.0 - 0 ENSG00000230353.5 processed_pseudogene AC114755.3 1 OTTHUMG00000153129.1 pseudo_consens +37196 chr2 HAVANA gene 106304755 106305197 443.0 + 0 ENSG00000233939.1 processed_pseudogene AC114755.4 1 OTTHUMG00000153186.1 pseudo_consens +37197 chr2 HAVANA gene 106344566 106345433 868.0 + 0 ENSG00000227513.1 processed_pseudogene AC114755.1 1 OTTHUMG00000153131.1 pseudo_consens +37198 chr2 HAVANA gene 106368209 106368876 361.0 - 0 ENSG00000229682.1 processed_pseudogene AC114755.2 1 OTTHUMG00000153184.1 pseudo_consens +37199 chr2 HAVANA gene 106369724 106378247 831.0 + 0 ENSG00000235486.1 unprocessed_pseudogene AC114755.5 2 OTTHUMG00000153179.1 +37200 chr2 HAVANA gene 106382171 106393031 991.0 + 0 ENSG00000240935.6 transcribed_unprocessed_pseudogene PLGLA 2 OTTHUMG00000153188.2 +37201 chr2 HAVANA gene 106391290 106468376 5818.0 - 0 ENSG00000153165.18 protein_coding RGPD3 2 OTTHUMG00000153182.1 +37202 chr2 HAVANA gene 106470799 106477669 530.0 - 0 ENSG00000237666.2 unprocessed_pseudogene AC097527.1 2 OTTHUMG00000153187.1 +37203 chr2 HAVANA gene 106521903 106538079 554.0 - 0 ENSG00000231505.1 lincRNA AC108868.1 1 OTTHUMG00000153181.1 +37204 chr2 HAVANA gene 106487364 106544297 5140.0 + 0 ENSG00000254126.7 protein_coding CD8B2 2 OTTHUMG00000153183.3 overlapping_locus +37205 chr2 HAVANA gene 106521563 106544297 1135.0 + 0 ENSG00000232001.2 processed_transcript AC108868.2 2 OTTHUMG00000192469.1 overlapping_locus +37206 chr2 HAVANA gene 106697331 106698676 1346.0 - 0 ENSG00000214199.3 processed_pseudogene EEF1A1P12 1 OTTHUMG00000153185.1 pseudo_consens +37207 chr2 HAVANA gene 106822923 106825031 388.0 - 0 ENSG00000238250.1 sense_intronic ST6GAL2-IT1 2 OTTHUMG00000153201.1 overlapping_locus +37208 chr2 HAVANA gene 106834464 106841207 552.0 + 0 ENSG00000227294.1 antisense AC016994.1 2 OTTHUMG00000153202.1 +37209 chr2 HAVANA gene 106801600 106887108 7708.0 - 0 ENSG00000144057.15 protein_coding ST6GAL2 2 OTTHUMG00000130923.5 overlapping_locus +37210 chr2 HAVANA gene 106940880 106941482 603.0 - 0 ENSG00000229360.1 processed_pseudogene PPP1R2P5 1 OTTHUMG00000153206.1 pseudo_consens +37211 chr2 HAVANA gene 106963193 106963674 482.0 + 0 ENSG00000226905.1 processed_pseudogene AC005040.1 2 OTTHUMG00000153207.1 +37212 chr2 HAVANA gene 107254691 107365873 1196.0 - 0 ENSG00000229457.1 lincRNA LINC01789 2 OTTHUMG00000153205.2 +37213 chr2 HAVANA gene 107362282 107407329 1305.0 + 0 ENSG00000225588.2 lincRNA AC096669.1 2 OTTHUMG00000153144.3 +37214 chr2 HAVANA gene 107385632 107542649 609.0 - 0 ENSG00000237880.1 lincRNA LINC01885 1 OTTHUMG00000153200.1 +37215 chr2 HAVANA gene 107529487 107556326 1612.0 + 0 ENSG00000224568.1 lincRNA LINC01886 1 OTTHUMG00000153209.2 +37216 chr2 HAVANA gene 107754112 107822129 811.0 + 0 ENSG00000232991.5 lincRNA GACAT1 1 OTTHUMG00000153313.1 +37217 chr2 HAVANA gene 107823063 107826891 2500.0 - 0 ENSG00000230651.7 lincRNA RGPD4-AS1 1 OTTHUMG00000153314.3 +37218 chr2 HAVANA gene 107826937 107890841 5464.0 + 0 ENSG00000196862.9 protein_coding RGPD4 2 OTTHUMG00000153208.2 +37219 chr2 HAVANA gene 107902997 107903134 138.0 - 0 ENSG00000233494.1 processed_pseudogene AC009963.2 2 OTTHUMG00000153328.1 +37220 chr2 HAVANA gene 107903964 107904241 157.0 + 0 ENSG00000227270.1 unprocessed_pseudogene AC009963.1 2 OTTHUMG00000153329.1 +37221 chr2 HAVANA gene 107914948 107915286 339.0 + 0 ENSG00000237745.1 processed_pseudogene RPL22P8 1 OTTHUMG00000153363.1 pseudo_consens +37222 chr2 HAVANA gene 107920763 107921248 486.0 - 0 ENSG00000235325.1 processed_pseudogene AC009963.3 1 OTTHUMG00000153362.1 pseudo_consens +37223 chr2 HAVANA gene 107986523 108013994 5168.0 + 0 ENSG00000115665.8 protein_coding SLC5A7 2 OTTHUMG00000130959.3 +37224 chr2 HAVANA gene 108049200 108052755 388.0 - 0 ENSG00000231221.1 lincRNA LINC01593 1 OTTHUMG00000153366.1 +37225 chr2 HAVANA gene 108099110 108099492 383.0 + 0 ENSG00000229890.1 processed_pseudogene ACTP1 1 OTTHUMG00000153365.1 pseudo_consens +37226 chr2 HAVANA gene 108167748 108217841 611.0 - 0 ENSG00000225328.1 antisense LINC01594 2 OTTHUMG00000153177.1 +37227 chr2 HAVANA gene 108226015 108226331 317.0 - 0 ENSG00000236877.2 processed_pseudogene SETD6P1 1 OTTHUMG00000184506.1 pseudo_consens +37228 chr2 HAVANA gene 108247195 108265351 915.0 + 0 ENSG00000196228.3 protein_coding SULT1C3 2 OTTHUMG00000153227.2 +37229 chr2 HAVANA gene 108276812 108277942 1131.0 + 0 ENSG00000227597.1 processed_pseudogene WASF1P1 1 OTTHUMG00000153228.1 pseudo_consens +37230 chr2 HAVANA gene 108288639 108309915 8399.0 + 0 ENSG00000198203.9 protein_coding SULT1C2 1 OTTHUMG00000153215.3 +37231 chr2 HAVANA gene 108317725 108318611 294.0 + 0 ENSG00000261209.1 unprocessed_pseudogene SULT1C2P2 2 OTTHUMG00000176329.1 +37232 chr2 HAVANA gene 108322238 108353799 2004.0 + 0 ENSG00000237223.6 transcribed_unprocessed_pseudogene SULT1C2P1 2 OTTHUMG00000153216.3 +37233 chr2 HAVANA gene 108367116 108367938 823.0 + 0 ENSG00000271070.1 processed_pseudogene GMCL1P2 1 OTTHUMG00000184264.1 pseudo_consens +37234 chr2 HAVANA gene 108377911 108388057 2898.0 + 0 ENSG00000198075.9 protein_coding SULT1C4 2 OTTHUMG00000130958.3 +37235 chr2 HAVANA gene 108423612 108423885 274.0 + 0 ENSG00000271284.1 processed_pseudogene SMIM12P1 1 OTTHUMG00000184263.1 pseudo_consens +37236 chr2 HAVANA gene 108448561 108509415 13282.0 + 0 ENSG00000135968.20 protein_coding GCC2 2 OTTHUMG00000153214.16 +37237 chr2 HAVANA gene 108507515 108534196 799.0 - 0 ENSG00000214184.3 antisense GCC2-AS1 2 OTTHUMG00000153224.1 +37238 chr2 HAVANA gene 108676795 108678601 477.0 - 0 ENSG00000228763.1 antisense LIMS1-AS1 2 OTTHUMG00000153229.1 +37239 chr2 HAVANA gene 108534355 108687246 7771.0 + 0 ENSG00000169756.16 protein_coding LIMS1 2 OTTHUMG00000130983.11 +37240 chr2 HAVANA gene 108694750 108694893 144.0 - 0 ENSG00000233648.1 processed_pseudogene AC010095.1 1 OTTHUMG00000153422.1 pseudo_consens +37241 chr2 HAVANA gene 108712262 108712900 639.0 - 0 ENSG00000235644.1 processed_pseudogene RPL10P5 1 OTTHUMG00000153421.1 pseudo_consens +37242 chr2 HAVANA gene 108719481 108785811 12302.0 + 0 ENSG00000153201.15 protein_coding RANBP2 2 OTTHUMG00000130981.10 +37243 chr2 HAVANA gene 108878308 108878460 153.0 + 0 ENSG00000227470.1 processed_pseudogene AC073415.1 1 OTTHUMG00000153436.1 pseudo_consens,overlapping_locus +37244 chr2 HAVANA gene 108786757 108885477 5796.0 + 0 ENSG00000163006.11 protein_coding CCDC138 1 OTTHUMG00000130980.5 overlapping_locus +37245 chr2 HAVANA gene 108894471 108989372 4426.0 - 0 ENSG00000135960.9 protein_coding EDAR 2 OTTHUMG00000130982.2 +37246 chr2 ENSEMBL gene 109124357 109124609 253.0 - 0 ENSG00000277628.1 misc_RNA RF00017 3 +37247 chr2 HAVANA gene 109127327 109128930 1604.0 - 0 ENSG00000259863.1 lincRNA SH3RF3-AS1 2 OTTHUMG00000153437.1 +37248 chr2 ENSEMBL gene 109141490 109141588 99.0 - 0 ENSG00000264934.1 miRNA MIR4265 3 +37249 chr2 HAVANA gene 109251422 109251646 225.0 + 0 ENSG00000228551.1 processed_pseudogene SNRPGP9 1 OTTHUMG00000153438.1 pseudo_consens,overlapping_locus +37250 chr2 ENSEMBL gene 109313571 109313625 55.0 - 0 ENSG00000265965.1 miRNA MIR4266 3 +37251 chr2 HAVANA gene 109129348 109504632 5803.0 + 0 ENSG00000172985.10 protein_coding SH3RF3 2 OTTHUMG00000153439.6 +37252 chr2 HAVANA gene 109552536 109552846 311.0 + 0 ENSG00000237916.1 processed_pseudogene AC011753.4 1 OTTHUMG00000157076.1 pseudo_consens +37253 chr2 HAVANA gene 109594693 109605698 610.0 - 0 ENSG00000230696.1 sense_intronic AC011753.2 2 OTTHUMG00000154962.1 overlapping_locus +37254 chr2 HAVANA gene 109542982 109614206 4131.0 - 0 ENSG00000186522.14 protein_coding SEPT10 1 OTTHUMG00000154957.5 overlapping_locus +37255 chr2 HAVANA gene 109614334 109618990 4657.0 + 0 ENSG00000198142.4 protein_coding SOWAHC 2 OTTHUMG00000153219.1 retrogene +37256 chr2 HAVANA gene 109665209 109665742 220.0 + 0 ENSG00000230603.1 processed_pseudogene AC011753.1 1 OTTHUMG00000154980.1 pseudo_consens +37257 chr2 HAVANA gene 109667128 109668002 393.0 + 0 ENSG00000231099.1 processed_pseudogene BMS1P19 2 OTTHUMG00000154976.1 +37258 chr2 HAVANA gene 109732731 109733136 406.0 + 0 ENSG00000233307.1 processed_pseudogene AC011753.3 1 OTTHUMG00000154961.1 pseudo_consens +37259 chr2 HAVANA gene 109737139 109737523 385.0 - 0 ENSG00000233707.3 processed_pseudogene RPL22P11 1 OTTHUMG00000154956.1 pseudo_consens +37260 chr2 HAVANA gene 109758799 109760364 823.0 - 0 ENSG00000282033.1 lincRNA AC074387.1 2 OTTHUMG00000191453.1 +37261 chr2 HAVANA gene 109792758 109857695 14175.0 + 0 ENSG00000015568.12 protein_coding RGPD5 2 OTTHUMG00000130985.17 +37262 chr2 HAVANA gene 109898428 109924868 2773.0 + 0 ENSG00000256977.12 protein_coding LIMS3 2 OTTHUMG00000191772.1 overlapping_locus +37263 chr2 HAVANA gene 109898432 109968557 4426.0 + 0 ENSG00000284337.1 protein_coding LIMS3-LOC440895 2 OTTHUMG00000131197.10 overlapping_locus +37264 chr2 HAVANA gene 109933161 109974085 3900.0 + 0 ENSG00000186148.13 transcribed_unprocessed_pseudogene AC013268.1 2 OTTHUMG00000191773.2 overlapping_locus +37265 chr2 HAVANA gene 109984058 109984988 931.0 + 0 ENSG00000240069.1 transcribed_processed_pseudogene GPAA1P1 1 OTTHUMG00000153221.2 pseudo_consens,overlapping_locus +37266 chr2 HAVANA gene 109937438 109985124 1959.0 + 0 ENSG00000283684.1 processed_transcript AC013268.5 2 OTTHUMG00000153222.3 overlapping_locus +37267 chr2 HAVANA gene 109986939 109988394 1456.0 - 0 ENSG00000225108.1 processed_pseudogene ZBTB45P1 2 OTTHUMG00000154978.1 +37268 chr2 HAVANA gene 109987063 109996140 3295.0 + 0 ENSG00000204588.5 lincRNA LINC01123 1 OTTHUMG00000154954.2 +37269 chr2 HAVANA gene 110007675 110010783 2324.0 + 0 ENSG00000235721.1 processed_pseudogene AC013268.3 2 OTTHUMG00000154977.1 +37270 chr2 HAVANA gene 110012265 110012601 337.0 - 0 ENSG00000229730.2 processed_pseudogene AC013268.2 2 OTTHUMG00000154979.2 +37271 chr2 HAVANA gene 110022447 110050064 3634.0 - 0 ENSG00000283283.2 unprocessed_pseudogene AC013268.4 2 OTTHUMG00000191649.2 +37272 chr2 ENSEMBL gene 110069961 110070042 82.0 - 0 ENSG00000265682.1 miRNA MIR4267 3 +37273 chr2 ENSEMBL gene 110086433 110086523 91.0 - 0 ENSG00000264979.1 miRNA MIR4436B1 3 +37274 chr2 HAVANA gene 110083870 110116566 3167.0 - 0 ENSG00000144063.3 protein_coding MALL 1 OTTHUMG00000131196.2 ncRNA_host +37275 chr2 HAVANA gene 110184054 110185179 1126.0 + 0 ENSG00000233370.1 processed_pseudogene AC140479.3 1 OTTHUMG00000154959.1 pseudo_consens +37276 chr2 HAVANA gene 110122311 110205066 11763.0 - 0 ENSG00000144061.12 protein_coding NPHP1 1 OTTHUMG00000131195.3 +37277 chr2 HAVANA gene 110211529 110245420 2051.0 - 0 ENSG00000175701.10 protein_coding MTLN 2 OTTHUMG00000131194.5 overlapping_locus +37278 chr2 HAVANA gene 110231106 110272050 1946.0 + 0 ENSG00000261760.8 transcribed_unprocessed_pseudogene AC140479.4 2 OTTHUMG00000191174.3 overlapping_locus +37279 chr2 ENSEMBL gene 110284853 110284943 91.0 + 0 ENSG00000263881.1 miRNA MIR4436B2 3 +37280 chr2 HAVANA gene 110279606 110285681 357.0 + 0 ENSG00000282785.1 transcribed_unprocessed_pseudogene AC140479.6 2 OTTHUMG00000191462.1 overlapping_locus +37281 chr2 HAVANA gene 110245591 110285856 932.0 + 0 ENSG00000282304.1 processed_transcript AC140479.5 2 OTTHUMG00000176121.4 ncRNA_host,overlapping_locus +37282 chr2 HAVANA gene 110321402 110348941 3972.0 + 0 ENSG00000283167.2 unprocessed_pseudogene AC140479.7 2 OTTHUMG00000191650.3 +37283 chr2 HAVANA gene 110358790 110359126 337.0 + 0 ENSG00000226991.2 processed_pseudogene AC140479.1 2 OTTHUMG00000155032.2 +37284 chr2 HAVANA gene 110360608 110363737 3130.0 - 0 ENSG00000230650.1 processed_pseudogene AC140479.2 2 OTTHUMG00000153193.1 +37285 chr2 HAVANA gene 110375138 110384442 2774.0 - 0 ENSG00000175772.10 lincRNA LINC01106 1 OTTHUMG00000155034.3 +37286 chr2 HAVANA gene 110383112 110384642 1531.0 + 0 ENSG00000226065.1 processed_pseudogene ZBTB45P2 2 OTTHUMG00000154955.1 +37287 chr2 HAVANA gene 110386377 110388163 1787.0 - 0 ENSG00000230596.3 transcribed_processed_pseudogene GPAA1P2 1 OTTHUMG00000153194.3 pseudo_consens,overlapping_locus +37288 chr2 HAVANA gene 110386411 110433673 1528.0 - 0 ENSG00000273471.1 processed_transcript AC112229.4 2 OTTHUMG00000186050.1 overlapping_locus +37289 chr2 HAVANA gene 110397406 110435166 3772.0 - 0 ENSG00000184115.17 transcribed_unprocessed_pseudogene AC112229.1 2 OTTHUMG00000167880.3 overlapping_locus +37290 chr2 HAVANA gene 110449242 110451064 476.0 + 0 ENSG00000227574.2 antisense AC112229.2 2 OTTHUMG00000155076.2 +37291 chr2 HAVANA gene 110402934 110473075 3202.0 - 0 ENSG00000257207.5 protein_coding AC112229.3 2 OTTHUMG00000167881.4 overlapping_locus +37292 chr2 HAVANA gene 110446640 110473075 2553.0 - 0 ENSG00000256671.6 protein_coding LIMS4 1 OTTHUMG00000169984.4 overlapping_locus +37293 chr2 HAVANA gene 110500100 110500235 136.0 + 0 ENSG00000231583.1 unprocessed_pseudogene AC108938.1 2 OTTHUMG00000155033.1 +37294 chr2 HAVANA gene 110513812 110577185 13309.0 - 0 ENSG00000183054.11 protein_coding RGPD6 2 OTTHUMG00000153196.11 +37295 chr2 HAVANA gene 110610916 110612404 747.0 + 0 ENSG00000231536.1 antisense AC226101.1 2 OTTHUMG00000153641.1 +37296 chr2 HAVANA gene 110633947 110634333 387.0 + 0 ENSG00000216867.2 processed_pseudogene RPL22P12 1 OTTHUMG00000153640.2 pseudo_consens +37297 chr2 HAVANA gene 110637698 110678114 6032.0 - 0 ENSG00000169679.14 protein_coding BUB1 2 OTTHUMG00000153638.5 +37298 chr2 HAVANA gene 110709575 110716595 4395.0 - 0 ENSG00000235881.2 lincRNA AC114776.1 2 OTTHUMG00000153642.2 +37299 chr2 HAVANA gene 110967834 110968719 886.0 + 0 ENSG00000236330.1 processed_pseudogene RPL5P9 1 OTTHUMG00000153639.1 pseudo_consens,overlapping_locus +37300 chr2 HAVANA gene 111098345 111115588 3432.0 - 0 ENSG00000204581.2 antisense ACOXL-AS1 1 OTTHUMG00000153643.1 +37301 chr2 HAVANA gene 110732573 111118222 5747.0 + 0 ENSG00000153093.18 protein_coding ACOXL 1 OTTHUMG00000131257.5 overlapping_locus +37302 chr2 HAVANA gene 111119378 111168447 6658.0 + 0 ENSG00000153094.22 protein_coding BCL2L11 2 OTTHUMG00000131256.9 +37303 chr2 HAVANA gene 111203964 111206215 347.0 - 0 ENSG00000227992.1 processed_pseudogene AC108463.1 1 OTTHUMG00000153689.1 pseudo_consens,overlapping_locus +37304 chr2 HAVANA gene 111195963 111206494 412.0 + 0 ENSG00000230499.1 lincRNA AC108463.2 2 OTTHUMG00000153644.1 +37305 chr2 HAVANA gene 111210995 111212476 1482.0 - 0 ENSG00000271590.1 lincRNA AC108463.3 2 OTTHUMG00000185273.1 overlapping_locus +37306 chr2 HAVANA gene 111266868 111267473 606.0 - 0 ENSG00000270190.1 lincRNA AC068491.3 2 OTTHUMG00000185276.1 overlapping_locus +37307 chr2 HAVANA gene 111265283 111279880 617.0 + 0 ENSG00000229118.1 lincRNA AC068491.2 2 OTTHUMG00000153690.1 +37308 chr2 HAVANA gene 111295629 111296046 418.0 - 0 ENSG00000226928.1 processed_pseudogene RPS14P4 1 OTTHUMG00000153699.1 pseudo_consens,overlapping_locus +37309 chr2 ENSEMBL gene 111321013 111321086 74.0 - 0 ENSG00000266139.2 miRNA MIR4435-2 3 +37310 chr2 HAVANA gene 111321433 111324812 3380.0 - 0 ENSG00000279191.1 TEC AC068491.4 2 OTTHUMG00000185277.1 overlapping_locus +37311 chr2 HAVANA gene 111383752 111384992 1241.0 + 0 ENSG00000223973.2 transcribed_processed_pseudogene AC068491.1 1 OTTHUMG00000153697.2 pseudo_consens +37312 chr2 HAVANA gene 111491943 111494811 881.0 - 0 ENSG00000224959.1 lincRNA AC017002.1 2 OTTHUMG00000153694.1 overlapping_locus +37313 chr2 HAVANA gene 111036776 111523376 13094.0 - 0 ENSG00000172965.15 lincRNA MIR4435-2HG 2 OTTHUMG00000150313.11 ncRNA_host,overlapping_locus +37314 chr2 HAVANA gene 111558413 111559937 1525.0 - 0 ENSG00000271635.1 processed_pseudogene AC017002.4 1 OTTHUMG00000184507.1 pseudo_consens +37315 chr2 HAVANA gene 111491273 111570974 889.0 + 0 ENSG00000240350.2 lincRNA AC017002.3 1 OTTHUMG00000153695.2 +37316 chr2 HAVANA gene 111607841 111612518 792.0 + 0 ENSG00000225744.1 lincRNA AC017002.2 1 OTTHUMG00000153696.1 +37317 chr2 HAVANA gene 111468810 111637967 871.0 + 0 ENSG00000280878.1 lincRNA AC017002.5 2 OTTHUMG00000189704.1 +37318 chr2 HAVANA gene 111675026 111675343 318.0 + 0 ENSG00000237583.1 processed_pseudogene AC093166.4 1 OTTHUMG00000153243.1 pseudo_consens +37319 chr2 HAVANA gene 111429324 111699033 1304.0 - 0 ENSG00000285016.1 processed_transcript AC017002.6 2 OTTHUMG00000131277.4 overlapping_locus +37320 chr2 HAVANA gene 111717508 111717837 330.0 + 0 ENSG00000227842.1 processed_pseudogene AC093166.1 2 OTTHUMG00000153259.1 +37321 chr2 HAVANA gene 111742586 111744662 1017.0 + 0 ENSG00000228615.1 processed_pseudogene AC093166.2 1 OTTHUMG00000153260.1 pseudo_consens +37322 chr2 ENSEMBL gene 111771061 111771134 74.0 - 0 ENSG00000266063.1 miRNA MIR4771-2 3 +37323 chr2 HAVANA gene 111865798 111866405 303.0 + 0 ENSG00000230958.1 processed_pseudogene AC093166.3 1 OTTHUMG00000153262.1 pseudo_consens +37324 chr2 HAVANA gene 111611639 111884690 13987.0 - 0 ENSG00000153107.12 protein_coding ANAPC1 2 OTTHUMG00000192458.1 ncRNA_host,overlapping_locus +37325 chr2 HAVANA gene 111887914 111888741 430.0 + 0 ENSG00000236307.2 processed_pseudogene EEF1E1P1 1 OTTHUMG00000153261.2 pseudo_consens +37326 chr2 ENSEMBL gene 111930175 111930467 293.0 + 0 ENSG00000240183.3 misc_RNA RN7SL297P 3 +37327 chr2 HAVANA gene 111940302 111941036 735.0 - 0 ENSG00000225496.1 processed_pseudogene AC104651.1 1 OTTHUMG00000153268.1 pseudo_consens +37328 chr2 HAVANA gene 111952144 111952671 528.0 - 0 ENSG00000232277.1 processed_pseudogene AC104651.2 1 OTTHUMG00000153269.1 pseudo_consens +37329 chr2 HAVANA gene 111898479 112029561 4700.0 + 0 ENSG00000153208.16 protein_coding MERTK 2 OTTHUMG00000131278.4 ncRNA_host +37330 chr2 HAVANA gene 112055223 112119318 5367.0 + 0 ENSG00000153214.10 protein_coding TMEM87B 2 OTTHUMG00000153266.4 +37331 chr2 HAVANA gene 112138385 112188216 6578.0 + 0 ENSG00000144152.12 protein_coding FBLN7 1 OTTHUMG00000153267.4 +37332 chr2 HAVANA gene 112188364 112190635 2272.0 + 0 ENSG00000278962.1 TEC AC092645.1 2 OTTHUMG00000176143.1 +37333 chr2 HAVANA gene 112211525 112255136 6600.0 - 0 ENSG00000144161.12 protein_coding ZC3H8 2 OTTHUMG00000153270.3 +37334 chr2 HAVANA gene 112286057 112286422 366.0 - 0 ENSG00000235258.1 processed_pseudogene NDUFB4P6 1 OTTHUMG00000153287.1 pseudo_consens +37335 chr2 HAVANA gene 112275594 112340063 11803.0 + 0 ENSG00000188177.13 protein_coding ZC3H6 2 OTTHUMG00000153286.3 +37336 chr2 HAVANA gene 112346011 112346258 248.0 + 0 ENSG00000236555.1 processed_pseudogene AC115115.1 2 OTTHUMG00000153285.1 +37337 chr2 HAVANA gene 112370092 112434488 6886.0 - 0 ENSG00000169629.11 protein_coding RGPD8 1 OTTHUMG00000153289.3 +37338 chr2 HAVANA gene 112439312 112469687 940.0 - 0 ENSG00000283698.1 transcribed_unitary_pseudogene AC012442.3 2 OTTHUMG00000191782.1 +37339 chr2 HAVANA gene 112482154 112541739 15732.0 + 0 ENSG00000114999.7 protein_coding TTL 2 OTTHUMG00000131316.3 +37340 chr2 HAVANA gene 112541915 112577150 6329.0 + 0 ENSG00000125630.15 protein_coding POLR1B 1 OTTHUMG00000131314.4 +37341 chr2 ENSEMBL gene 112579484 112579584 101.0 - 0 ENSG00000207383.1 misc_RNA RF00019 3 +37342 chr2 HAVANA gene 112584240 112589275 3759.0 + 0 ENSG00000125611.15 protein_coding CHCHD5 2 OTTHUMG00000131312.2 overlapping_locus +37343 chr2 HAVANA gene 112590796 112591939 529.0 + 0 ENSG00000228251.1 lincRNA AC012442.1 1 OTTHUMG00000153300.1 overlapping_locus +37344 chr2 HAVANA gene 112589040 112614431 425.0 + 0 ENSG00000243389.1 3prime_overlapping_ncRNA AC012442.2 2 OTTHUMG00000153302.1 overlapping_locus +37345 chr2 HAVANA gene 112621809 112622167 359.0 - 0 ENSG00000231747.1 processed_pseudogene AC079922.1 1 OTTHUMG00000153301.1 pseudo_consens +37346 chr2 HAVANA gene 112641832 112645690 2022.0 - 0 ENSG00000237753.1 lincRNA FLJ42351 2 OTTHUMG00000153299.1 +37347 chr2 HAVANA gene 112645857 112663827 5577.0 + 0 ENSG00000144136.10 protein_coding SLC20A1 1 OTTHUMG00000131317.4 +37348 chr2 HAVANA gene 112721486 112742879 4225.0 + 0 ENSG00000144130.11 protein_coding NT5DC4 1 OTTHUMG00000153308.1 +37349 chr2 HAVANA gene 112736607 112764677 5219.0 - 0 ENSG00000169607.12 protein_coding CKAP2L 2 OTTHUMG00000131313.2 +37350 chr2 HAVANA gene 112773915 112784590 2124.0 - 0 ENSG00000115008.5 protein_coding IL1A 2 OTTHUMG00000131315.2 +37351 chr2 HAVANA gene 112829751 112836903 3096.0 - 0 ENSG00000125538.11 protein_coding IL1B 2 OTTHUMG00000131344.3 +37352 chr2 HAVANA gene 112840328 112844195 3868.0 + 0 ENSG00000280228.1 TEC AC079753.1 2 OTTHUMG00000176146.1 +37353 chr2 HAVANA gene 112853328 112854122 795.0 + 0 ENSG00000180152.3 processed_pseudogene XIAPP3 1 OTTHUMG00000153319.1 pseudo_consens +37354 chr2 HAVANA gene 112912971 112918882 839.0 + 0 ENSG00000125571.9 protein_coding IL37 2 OTTHUMG00000131345.1 +37355 chr2 HAVANA gene 112932625 112933171 547.0 + 0 ENSG00000227368.1 processed_pseudogene CDK8P2 1 OTTHUMG00000153324.1 pseudo_consens +37356 chr2 HAVANA gene 112981166 112981434 269.0 - 0 ENSG00000236124.1 processed_pseudogene HMGN2P23 2 OTTHUMG00000153321.1 +37357 chr2 HAVANA gene 112973203 112985665 1380.0 + 0 ENSG00000136688.10 protein_coding IL36G 2 OTTHUMG00000131336.4 +37358 chr2 HAVANA gene 112995517 112995937 421.0 + 0 ENSG00000232090.2 processed_pseudogene AC016724.1 1 OTTHUMG00000153323.2 pseudo_consens +37359 chr2 HAVANA gene 113005461 113008044 888.0 + 0 ENSG00000136694.8 protein_coding IL36A 2 OTTHUMG00000153320.2 +37360 chr2 HAVANA gene 113022091 113052867 1869.0 - 0 ENSG00000136696.10 protein_coding IL36B 2 OTTHUMG00000131338.1 +37361 chr2 HAVANA gene 113058638 113065382 3299.0 + 0 ENSG00000136695.14 protein_coding IL36RN 2 OTTHUMG00000131337.4 +37362 chr2 HAVANA gene 113067970 113075850 1597.0 + 0 ENSG00000136697.12 protein_coding IL1F10 2 OTTHUMG00000131339.2 +37363 chr2 ENSEMBL gene 113086805 113086911 107.0 + 0 ENSG00000201805.1 snRNA RNU6-1180P 3 +37364 chr2 HAVANA gene 113107214 113134016 3256.0 + 0 ENSG00000136689.18 protein_coding IL1RN 1 OTTHUMG00000131341.2 +37365 chr2 HAVANA gene 113171535 113175360 1074.0 - 0 ENSG00000234174.1 antisense AC016683.1 1 OTTHUMG00000153342.1 +37366 chr2 HAVANA gene 113157325 113209396 13442.0 + 0 ENSG00000125637.15 protein_coding PSD4 1 OTTHUMG00000153339.3 +37367 chr2 HAVANA gene 113211522 113276581 17274.0 + 0 ENSG00000189223.14 processed_transcript PAX8-AS1 1 OTTHUMG00000153340.8 overlapping_locus +37368 chr2 HAVANA gene 113215997 113278950 7400.0 - 0 ENSG00000125618.16 protein_coding PAX8 1 OTTHUMG00000128529.11 +37369 chr2 HAVANA gene 113406396 113406872 353.0 + 0 ENSG00000231292.6 IG_V_gene IGKV1OR2-108 2 OTTHUMG00000153338.3 +37370 chr2 HAVANA gene 113424495 113425324 508.0 + 0 ENSG00000234997.1 antisense AC016745.1 2 OTTHUMG00000153341.1 +37371 chr2 HAVANA gene 113432600 113436042 3443.0 + 0 ENSG00000272563.1 lincRNA AC016745.2 2 OTTHUMG00000186041.1 +37372 chr2 HAVANA gene 113437691 113496189 8396.0 + 0 ENSG00000136682.14 protein_coding CBWD2 2 OTTHUMG00000131360.3 +37373 chr2 HAVANA gene 113498665 113501155 2491.0 + 0 ENSG00000184492.6 protein_coding FOXD4L1 2 OTTHUMG00000131359.1 +37374 chr2 HAVANA gene 113512463 113515485 745.0 + 0 ENSG00000234148.2 lincRNA LINC01961 2 OTTHUMG00000184091.1 +37375 chr2 HAVANA gene 113527568 113542672 1435.0 - 0 ENSG00000231943.7 lincRNA PGM5P4-AS1 2 OTTHUMG00000047830.3 +37376 chr2 HAVANA gene 113541937 113563298 445.0 + 0 ENSG00000225398.3 unprocessed_pseudogene PGM5P4 2 OTTHUMG00000047819.3 +37377 chr2 HAVANA gene 113577382 113578852 1232.0 + 0 ENSG00000226516.7 lincRNA FAM138B 2 OTTHUMG00000047820.3 +37378 chr2 ENSEMBL gene 113582959 113583096 138.0 - 0 ENSG00000221055.1 miRNA MIR1302-3 3 +37379 chr2 HAVANA gene 113588550 113599043 2958.0 + 0 ENSG00000146556.14 transcribed_unprocessed_pseudogene WASH2P 2 OTTHUMG00000047822.4 +37380 chr2 HAVANA gene 113599036 113601261 1398.0 - 0 ENSG00000236397.3 unprocessed_pseudogene DDX11L2 2 OTTHUMG00000047823.1 +37381 chr2 HAVANA gene 113605867 113607908 2042.0 - 0 ENSG00000279267.1 TEC AL078621.3 2 OTTHUMG00000176151.1 +37382 chr2 HAVANA gene 113610502 113627090 2128.0 - 0 ENSG00000240356.6 transcribed_processed_pseudogene RPL23AP7 1 OTTHUMG00000047825.2 pseudo_consens +37383 chr2 HAVANA gene 113627229 113643396 6008.0 + 0 ENSG00000144134.18 protein_coding RABL2A 2 OTTHUMG00000047828.6 +37384 chr2 HAVANA gene 113657908 113658675 768.0 + 0 ENSG00000144158.4 processed_pseudogene AL078621.1 2 OTTHUMG00000153382.1 +37385 chr2 HAVANA gene 113667478 113668621 698.0 - 0 ENSG00000175509.8 processed_pseudogene AL078621.2 2 OTTHUMG00000047826.3 +37386 chr2 HAVANA gene 113669166 113673191 607.0 + 0 ENSG00000233479.1 lincRNA AC017074.2 2 OTTHUMG00000153381.1 +37387 chr2 ENSEMBL gene 113681111 113681217 107.0 + 0 ENSG00000202427.1 snRNA RNU6-744P 3 +37388 chr2 HAVANA gene 113677702 113704078 561.0 - 0 ENSG00000227359.1 lincRNA AC017074.1 2 OTTHUMG00000153380.1 +37389 chr2 ENSEMBL gene 113721290 113721368 79.0 - 0 ENSG00000265429.3 miRNA MIR4782 3 +37390 chr2 HAVANA gene 113705011 113756823 7445.0 - 0 ENSG00000115084.13 protein_coding SLC35F5 1 OTTHUMG00000131361.5 ncRNA_host +37391 chr2 HAVANA gene 113829390 113831119 416.0 - 0 ENSG00000244063.1 lincRNA AC104653.2 2 OTTHUMG00000153498.1 overlapping_locus +37392 chr2 HAVANA gene 113831049 113843356 671.0 - 0 ENSG00000228857.2 lincRNA AC104653.1 1 OTTHUMG00000153496.1 overlapping_locus +37393 chr2 HAVANA gene 113888203 113889750 1548.0 - 0 ENSG00000270019.1 lincRNA AC110769.2 2 OTTHUMG00000183982.1 +37394 chr2 HAVANA gene 113904086 113905258 1173.0 + 0 ENSG00000279957.1 TEC AC110769.3 2 OTTHUMG00000187434.1 overlapping_locus +37395 chr2 HAVANA gene 113889960 113962596 12049.0 + 0 ENSG00000115091.11 protein_coding ACTR3 2 OTTHUMG00000153497.8 overlapping_locus +37396 chr2 HAVANA gene 113979909 113983258 815.0 + 0 ENSG00000243179.1 lincRNA AC110769.1 2 OTTHUMG00000153531.1 overlapping_locus +37397 chr2 ENSEMBL gene 114005440 114005655 216.0 - 0 ENSG00000212182.2 snoRNA RF00012 3 +37398 chr2 HAVANA gene 113979569 114007302 844.0 + 0 ENSG00000234199.2 lincRNA LINC01191 1 OTTHUMG00000153529.1 overlapping_locus +37399 chr2 HAVANA gene 114122274 114123293 465.0 - 0 ENSG00000235242.1 lincRNA AC010982.1 2 OTTHUMG00000153530.1 +37400 chr2 HAVANA gene 114260050 114261226 1177.0 - 0 ENSG00000231926.1 processed_pseudogene SEPHS1P7 1 OTTHUMG00000153272.1 pseudo_consens +37401 chr2 ENSEMBL gene 114420125 114420302 178.0 + 0 ENSG00000222923.1 snRNA RNU2-41P 3 +37402 chr2 HAVANA gene 114828432 114833548 665.0 - 0 ENSG00000231538.1 antisense DPP10-AS3 1 OTTHUMG00000153281.1 +37403 chr2 HAVANA gene 114833830 114835588 624.0 - 0 ENSG00000235717.1 antisense DPP10-AS2 2 OTTHUMG00000153283.1 +37404 chr2 HAVANA gene 115130935 115161343 995.0 - 0 ENSG00000235026.5 antisense DPP10-AS1 1 OTTHUMG00000153346.1 +37405 chr2 HAVANA gene 115468056 115468938 883.0 + 0 ENSG00000230391.1 processed_pseudogene RPSAP23 1 OTTHUMG00000153316.1 pseudo_consens,overlapping_locus +37406 chr2 HAVANA gene 114442299 115845752 10005.0 + 0 ENSG00000175497.16 protein_coding DPP10 2 OTTHUMG00000153294.9 overlapping_locus +37407 chr2 HAVANA gene 116687218 116687387 170.0 - 0 ENSG00000271667.1 processed_pseudogene AC104408.1 1 OTTHUMG00000184508.1 pseudo_consens +37408 chr2 HAVANA gene 116726453 116726771 319.0 - 0 ENSG00000224869.1 processed_pseudogene AC062016.1 1 OTTHUMG00000153307.3 pseudo_consens +37409 chr2 HAVANA gene 116751158 116751648 491.0 + 0 ENSG00000226341.1 processed_pseudogene MTCYBP39 2 OTTHUMG00000153306.3 +37410 chr2 HAVANA gene 116818086 116818761 676.0 + 0 ENSG00000235871.1 processed_pseudogene AC062016.2 2 OTTHUMG00000153850.1 +37411 chr2 HAVANA gene 117023918 117024867 950.0 + 0 ENSG00000230158.1 unprocessed_pseudogene MTND1P28 2 OTTHUMG00000153403.1 +37412 chr2 HAVANA gene 117025077 117026118 1042.0 + 0 ENSG00000230950.1 unprocessed_pseudogene MTND2P21 2 OTTHUMG00000153401.1 +37413 chr2 HAVANA gene 117026537 117027024 488.0 + 0 ENSG00000228898.1 unprocessed_pseudogene MTCO1P43 2 OTTHUMG00000153404.1 +37414 chr2 ENSEMBL gene 117139715 117139775 61.0 - 0 ENSG00000239185.1 snRNA RNU7-190P 3 +37415 chr2 HAVANA gene 117180892 117181562 356.0 - 0 ENSG00000227291.1 processed_pseudogene AC092170.1 1 OTTHUMG00000153402.1 pseudo_consens +37416 chr2 HAVANA gene 117757563 117804174 592.0 - 0 ENSG00000238207.1 antisense AC009312.1 2 OTTHUMG00000141319.1 +37417 chr2 HAVANA gene 117814650 117832379 7851.0 + 0 ENSG00000088205.12 protein_coding DDX18 2 OTTHUMG00000058521.9 +37418 chr2 HAVANA gene 117833937 117841658 4058.0 + 0 ENSG00000236255.1 lincRNA AC009404.1 1 OTTHUMG00000058513.2 +37419 chr2 HAVANA gene 117934025 117934789 352.0 - 0 ENSG00000224967.1 processed_pseudogene AC009303.1 2 OTTHUMG00000128951.1 overlapping_locus +37420 chr2 HAVANA gene 117859427 117934942 2278.0 + 0 ENSG00000125631.7 transcribed_unprocessed_pseudogene HTR5BP 2 OTTHUMG00000058516.2 +37421 chr2 HAVANA gene 117998745 117999480 736.0 + 0 ENSG00000272895.1 antisense AC009303.3 2 OTTHUMG00000186118.1 overlapping_locus +37422 chr2 HAVANA gene 117915478 118014133 8065.0 - 0 ENSG00000125633.10 protein_coding CCDC93 2 OTTHUMG00000058517.5 overlapping_locus +37423 chr2 HAVANA gene 118014174 118015673 1500.0 + 0 ENSG00000279227.1 TEC AC009303.4 2 OTTHUMG00000058520.1 +37424 chr2 ENSEMBL gene 118016385 118016669 285.0 + 0 ENSG00000243510.3 misc_RNA RN7SL111P 3 +37425 chr2 HAVANA gene 117995397 118055033 4282.0 + 0 ENSG00000235066.7 antisense AC009303.2 2 OTTHUMG00000058519.6 ncRNA_host,overlapping_locus +37426 chr2 HAVANA gene 118088452 118110997 3950.0 + 0 ENSG00000125629.14 protein_coding INSIG2 2 OTTHUMG00000058518.2 +37427 chr2 HAVANA gene 118132128 118222250 2253.0 - 0 ENSG00000226856.6 lincRNA THORLNC 2 OTTHUMG00000153418.3 +37428 chr2 HAVANA gene 118766965 118835110 1110.0 - 0 ENSG00000258910.3 lincRNA LINC01956 1 OTTHUMG00000170896.3 +37429 chr2 HAVANA gene 118842171 118847678 2886.0 - 0 ENSG00000163064.6 protein_coding EN1 2 OTTHUMG00000131401.3 +37430 chr2 HAVANA gene 118949306 118952983 1011.0 - 0 ENSG00000259094.1 antisense AC013457.1 2 OTTHUMG00000170897.1 +37431 chr2 HAVANA gene 118942166 118994660 2079.0 + 0 ENSG00000019169.10 protein_coding MARCO 2 OTTHUMG00000131400.4 +37432 chr2 HAVANA gene 119156243 119158889 2043.0 - 0 ENSG00000144119.3 protein_coding C1QL2 2 OTTHUMG00000153271.2 +37433 chr2 ENSEMBL gene 119169822 119170115 294.0 + 0 ENSG00000264833.1 misc_RNA RN7SL468P 3 +37434 chr2 HAVANA gene 119244422 119249071 3218.0 - 0 ENSG00000229867.1 antisense STEAP3-AS1 2 OTTHUMG00000153297.1 +37435 chr2 HAVANA gene 119223831 119265652 4562.0 + 0 ENSG00000115107.19 protein_coding STEAP3 2 OTTHUMG00000131402.2 +37436 chr2 HAVANA gene 119302225 119366828 1548.0 - 0 ENSG00000186132.14 protein_coding C2orf76 1 OTTHUMG00000153298.3 +37437 chr2 HAVANA gene 119366921 119372560 2509.0 + 0 ENSG00000155368.16 protein_coding DBI 1 OTTHUMG00000131403.4 +37438 chr2 HAVANA gene 119429901 119438520 2292.0 + 0 ENSG00000171227.6 protein_coding TMEM37 1 OTTHUMG00000153304.5 +37439 chr2 HAVANA gene 119476448 119487346 2089.0 + 0 ENSG00000231013.1 antisense AC013275.1 2 OTTHUMG00000153309.1 +37440 chr2 HAVANA gene 119439843 119525301 3426.0 - 0 ENSG00000080293.9 protein_coding SCTR 2 OTTHUMG00000131407.4 +37441 chr2 HAVANA gene 119544432 119662251 9655.0 + 0 ENSG00000163075.12 protein_coding CFAP221 1 OTTHUMG00000153310.2 +37442 chr2 HAVANA gene 119679167 119686507 2588.0 + 0 ENSG00000144120.12 protein_coding TMEM177 1 OTTHUMG00000153312.2 +37443 chr2 HAVANA gene 119698623 119700151 542.0 + 0 ENSG00000229326.3 processed_pseudogene AC069154.1 1 OTTHUMG00000153311.2 pseudo_consens +37444 chr2 HAVANA gene 119759631 119983818 12486.0 + 0 ENSG00000088179.8 protein_coding PTPN4 1 OTTHUMG00000131436.8 +37445 chr2 HAVANA gene 119993199 119993611 413.0 - 0 ENSG00000233741.1 processed_pseudogene AC016691.1 1 OTTHUMG00000153845.4 pseudo_consens +37446 chr2 HAVANA gene 120013005 120179119 9281.0 + 0 ENSG00000115109.13 protein_coding EPB41L5 2 OTTHUMG00000131433.6 +37447 chr2 ENSEMBL gene 120192245 120192357 113.0 + 0 ENSG00000202046.1 misc_RNA RF00019 3 +37448 chr2 HAVANA gene 120211054 120211715 662.0 + 0 ENSG00000236878.1 processed_pseudogene MTATP6P26 2 OTTHUMG00000154461.1 +37449 chr2 HAVANA gene 120211727 120212862 771.0 + 0 ENSG00000227788.1 processed_pseudogene MTCO3P43 2 OTTHUMG00000154457.1 +37450 chr2 HAVANA gene 120212935 120213275 341.0 + 0 ENSG00000233286.1 processed_pseudogene MTND3P10 2 OTTHUMG00000154459.1 +37451 chr2 HAVANA gene 120213344 120213631 288.0 + 0 ENSG00000243104.1 processed_pseudogene MTND4LP14 2 OTTHUMG00000154460.1 +37452 chr2 HAVANA gene 120213631 120214989 1359.0 + 0 ENSG00000234065.2 processed_pseudogene MTND4P26 2 OTTHUMG00000154456.1 +37453 chr2 HAVANA gene 120174885 120216544 575.0 - 0 ENSG00000224789.1 antisense AC012363.1 2 OTTHUMG00000153764.1 +37454 chr2 HAVANA gene 120215181 120217279 1594.0 + 0 ENSG00000223549.1 processed_pseudogene MTND5P28 2 OTTHUMG00000154458.1 +37455 chr2 HAVANA gene 120221278 120223408 2131.0 - 0 ENSG00000226479.3 protein_coding TMEM185B 2 OTTHUMG00000154402.4 retrogene +37456 chr2 HAVANA gene 120240064 120294713 2915.0 + 0 ENSG00000144118.13 protein_coding RALB 1 OTTHUMG00000131435.21 +37457 chr2 HAVANA gene 120319007 120326298 555.0 + 0 ENSG00000235840.1 lincRNA AC012363.2 2 OTTHUMG00000155116.1 +37458 chr2 HAVANA gene 120346143 120351808 3204.0 + 0 ENSG00000163083.5 protein_coding INHBB 2 OTTHUMG00000131437.1 +37459 chr2 HAVANA gene 120464335 120466218 1884.0 - 0 ENSG00000280409.1 TEC LINC01101 2 OTTHUMG00000187117.1 +37460 chr2 HAVANA gene 120542909 120544326 528.0 - 0 ENSG00000237614.1 lincRNA AC073257.2 1 OTTHUMG00000155117.2 +37461 chr2 HAVANA gene 120553743 120558109 523.0 - 0 ENSG00000232140.1 lincRNA AC073257.1 1 OTTHUMG00000153753.1 +37462 chr2 ENSEMBL gene 120651273 120651374 102.0 + 0 ENSG00000201006.1 misc_RNA RF00019 3 +37463 chr2 HAVANA gene 120686635 120710517 592.0 - 0 ENSG00000229774.1 lincRNA AC018866.1 2 OTTHUMG00000154317.1 +37464 chr2 HAVANA gene 120866378 120867403 708.0 - 0 ENSG00000271709.1 lincRNA AC017033.1 2 OTTHUMG00000185284.1 +37465 chr2 HAVANA gene 120735623 120992653 7341.0 + 0 ENSG00000074047.21 protein_coding GLI2 2 OTTHUMG00000153741.11 +37466 chr2 ENSEMBL gene 121040610 121040710 101.0 - 0 ENSG00000201584.1 misc_RNA RF00019 3 +37467 chr2 HAVANA gene 121081437 121088726 812.0 - 0 ENSG00000234455.1 lincRNA AC067960.1 1 OTTHUMG00000153742.1 +37468 chr2 HAVANA gene 121178327 121182580 544.0 + 0 ENSG00000236145.1 lincRNA AC079988.1 2 OTTHUMG00000153330.1 +37469 chr2 HAVANA gene 121216587 121285207 9372.0 - 0 ENSG00000115112.7 protein_coding TFCP2L1 2 OTTHUMG00000131443.2 +37470 chr2 HAVANA gene 121309995 121310412 418.0 + 0 ENSG00000232723.1 processed_pseudogene AC013399.1 1 OTTHUMG00000155142.1 pseudo_consens +37471 chr2 ENSEMBL gene 121530881 121531007 127.0 + 0 ENSG00000264229.1 snRNA RNU4ATAC 3 +37472 chr2 HAVANA gene 121530422 121532705 682.0 + 0 ENSG00000265451.1 antisense AC012447.1 2 OTTHUMG00000179705.1 ncRNA_host +37473 chr2 ENSEMBL gene 121603073 121603164 92.0 - 0 ENSG00000222467.1 misc_RNA RF00019 3 +37474 chr2 HAVANA gene 121337776 121649587 11052.0 - 0 ENSG00000074054.18 protein_coding CLASP1 2 OTTHUMG00000153331.9 ncRNA_host +37475 chr2 HAVANA gene 121658475 121658973 499.0 - 0 ENSG00000230993.1 processed_pseudogene RPL12P15 1 OTTHUMG00000155143.1 pseudo_consens +37476 chr2 HAVANA gene 121688203 121689714 1512.0 + 0 ENSG00000279721.1 TEC AC018737.2 2 OTTHUMG00000185304.1 overlapping_locus +37477 chr2 HAVANA gene 121708512 121709115 604.0 - 0 ENSG00000213239.3 processed_pseudogene NPM1P32 1 OTTHUMG00000153347.1 pseudo_consens +37478 chr2 HAVANA gene 121649650 121728481 2551.0 + 0 ENSG00000236859.6 antisense NIFK-AS1 1 OTTHUMG00000153332.4 overlapping_locus +37479 chr2 HAVANA gene 121726945 121736923 2447.0 - 0 ENSG00000155438.11 protein_coding NIFK 2 OTTHUMG00000131442.4 +37480 chr2 HAVANA gene 121743479 121745921 204.0 - 0 ENSG00000270798.1 processed_pseudogene AC018737.1 1 OTTHUMG00000184509.1 pseudo_consens +37481 chr2 HAVANA gene 121737103 121767853 4407.0 + 0 ENSG00000211460.11 protein_coding TSN 1 OTTHUMG00000153334.4 +37482 chr2 HAVANA gene 121790444 121796702 1451.0 + 0 ENSG00000224655.5 lincRNA LINC01823 2 OTTHUMG00000153333.2 +37483 chr2 HAVANA gene 123065321 123067722 801.0 + 0 ENSG00000237856.1 lincRNA AC062020.1 2 OTTHUMG00000153425.1 +37484 chr2 HAVANA gene 123066151 123073481 584.0 - 0 ENSG00000232740.1 lincRNA LINC01826 2 OTTHUMG00000153424.1 +37485 chr2 HAVANA gene 123443266 123444445 269.0 - 0 ENSG00000226708.1 lincRNA AC073409.1 1 OTTHUMG00000153426.1 +37486 chr2 HAVANA gene 123695302 123697396 2095.0 + 0 ENSG00000235640.1 processed_pseudogene AC092646.2 1 OTTHUMG00000153350.1 pseudo_consens +37487 chr2 HAVANA gene 123762171 123763071 901.0 + 0 ENSG00000227738.1 processed_pseudogene AC092646.1 1 OTTHUMG00000153349.1 pseudo_consens +37488 chr2 HAVANA gene 123850522 123850695 174.0 - 0 ENSG00000279874.1 TEC AC064859.1 2 OTTHUMG00000176153.1 +37489 chr2 ENSEMBL gene 123869256 123869570 315.0 - 0 ENSG00000223118.1 misc_RNA RN7SKP102 3 +37490 chr2 HAVANA gene 124016858 124025173 542.0 - 0 ENSG00000228400.1 antisense AC079154.1 2 OTTHUMG00000153351.1 +37491 chr2 HAVANA gene 124680722 124680916 195.0 - 0 ENSG00000238046.1 processed_pseudogene MTND5P22 2 OTTHUMG00000153364.1 +37492 chr2 HAVANA gene 124778454 124778640 187.0 - 0 ENSG00000270815.1 processed_pseudogene AC019159.1 2 OTTHUMG00000184429.1 +37493 chr2 HAVANA gene 124025287 124915287 5446.0 + 0 ENSG00000155052.14 protein_coding CNTNAP5 2 OTTHUMG00000153356.5 +37494 chr2 ENSEMBL gene 124932915 124933020 106.0 + 0 ENSG00000252674.1 rRNA_pseudogene RNA5SP102 3 +37495 chr2 ENSEMBL gene 124989219 124989325 107.0 + 0 ENSG00000206726.1 snRNA RNU6-259P 3 +37496 chr2 HAVANA gene 125710969 125765842 668.0 + 0 ENSG00000235491.1 lincRNA LINC01889 2 OTTHUMG00000153369.1 +37497 chr2 HAVANA gene 125823108 125823315 208.0 + 0 ENSG00000224410.1 processed_pseudogene AC097499.1 1 OTTHUMG00000153368.1 pseudo_consens +37498 chr2 HAVANA gene 126110099 126117985 624.0 - 0 ENSG00000226813.2 lincRNA LINC01941 2 OTTHUMG00000153386.2 +37499 chr2 HAVANA gene 126311466 126311927 462.0 - 0 ENSG00000236655.1 processed_pseudogene AC023347.2 1 OTTHUMG00000153375.1 pseudo_consens +37500 chr2 HAVANA gene 126308510 126343992 920.0 + 0 ENSG00000235774.1 lincRNA AC023347.1 1 OTTHUMG00000153374.2 +37501 chr2 HAVANA gene 126557435 126558162 728.0 - 0 ENSG00000213236.3 processed_pseudogene YWHAZP2 1 OTTHUMG00000153373.1 pseudo_consens +37502 chr2 HAVANA gene 126679622 126680420 799.0 + 0 ENSG00000235128.1 processed_pseudogene AC013474.1 2 OTTHUMG00000153372.1 overlapping_locus +37503 chr2 HAVANA gene 126655933 126696670 3812.0 + 0 ENSG00000136732.15 protein_coding GYPC 1 OTTHUMG00000131464.3 overlapping_locus +37504 chr2 ENSEMBL gene 126702839 126702942 104.0 - 0 ENSG00000206963.1 snRNA RNU6-675P 3 +37505 chr2 HAVANA gene 126898864 126902097 1533.0 + 0 ENSG00000237524.9 protein_coding TEX51 1 OTTHUMG00000153376.5 +37506 chr2 ENSEMBL gene 127017421 127017482 62.0 + 0 ENSG00000238788.1 snRNA RNU7-182P 3 +37507 chr2 HAVANA gene 127024252 127025723 1472.0 - 0 ENSG00000260634.1 lincRNA AC012508.2 2 OTTHUMG00000176160.1 +37508 chr2 HAVANA gene 127025211 127029686 4476.0 + 0 ENSG00000260163.1 lincRNA AC012508.1 2 OTTHUMG00000176163.1 +37509 chr2 HAVANA gene 127048027 127107355 6929.0 - 0 ENSG00000136717.14 protein_coding BIN1 2 OTTHUMG00000131465.2 +37510 chr2 HAVANA gene 127170011 127170231 221.0 + 0 ENSG00000237630.1 processed_pseudogene NIFKP9 2 OTTHUMG00000153399.1 +37511 chr2 HAVANA gene 127184120 127220078 4491.0 - 0 ENSG00000186684.12 protein_coding CYP27C1 2 OTTHUMG00000153400.1 +37512 chr2 HAVANA gene 127247258 127250082 2825.0 + 0 ENSG00000226789.1 processed_pseudogene AC110926.1 1 OTTHUMG00000153396.1 pseudo_consens +37513 chr2 HAVANA gene 127257290 127294176 7401.0 - 0 ENSG00000163161.13 protein_coding ERCC3 2 OTTHUMG00000131530.8 +37514 chr2 ENSEMBL gene 127316873 127316979 107.0 + 0 ENSG00000200250.1 snRNA RNU6-1147P 3 +37515 chr2 HAVANA gene 127298730 127388465 11508.0 - 0 ENSG00000169967.16 protein_coding MAP3K2 2 OTTHUMG00000153397.2 +37516 chr2 HAVANA gene 127389130 127400580 2690.0 + 0 ENSG00000236682.1 lincRNA AC068282.1 1 OTTHUMG00000153398.1 +37517 chr2 ENSEMBL gene 127423537 127423618 82.0 - 0 ENSG00000264075.1 miRNA MIR4783 3 +37518 chr2 HAVANA gene 127418427 127429246 2495.0 + 0 ENSG00000115718.17 protein_coding PROC 2 OTTHUMG00000131528.5 +37519 chr2 ENSEMBL gene 127472234 127472415 182.0 + 0 ENSG00000202429.1 snRNA RNU4-48P 3 +37520 chr2 HAVANA gene 127455394 127514623 5510.0 + 0 ENSG00000231731.7 antisense AC010976.1 2 OTTHUMG00000153411.7 ncRNA_host +37521 chr2 HAVANA gene 127436207 127526886 4150.0 - 0 ENSG00000163166.14 protein_coding IWS1 1 OTTHUMG00000131527.10 +37522 chr2 HAVANA gene 127625997 127626848 852.0 - 0 ENSG00000272789.1 antisense AC010976.2 2 OTTHUMG00000186042.2 +37523 chr2 HAVANA gene 127535802 127637729 8800.0 + 0 ENSG00000169994.18 protein_coding MYO7B 2 OTTHUMG00000153419.11 +37524 chr2 HAVANA gene 127645864 127652639 2671.0 + 0 ENSG00000144230.16 protein_coding GPR17 2 OTTHUMG00000131533.5 +37525 chr2 HAVANA gene 127638381 127681786 8487.0 - 0 ENSG00000072163.19 protein_coding LIMS2 1 OTTHUMG00000131529.6 +37526 chr2 HAVANA gene 127701508 127705242 3735.0 + 0 ENSG00000173349.5 protein_coding SFT2D3 2 OTTHUMG00000131532.1 +37527 chr2 ENSEMBL gene 127798903 127798998 96.0 - 0 ENSG00000201470.1 misc_RNA RNY4P7 3 +37528 chr2 HAVANA gene 127701022 127811187 14580.0 - 0 ENSG00000136709.11 protein_coding WDR33 2 OTTHUMG00000131534.7 ncRNA_host +37529 chr2 ENSEMBL gene 127829747 127829852 106.0 - 0 ENSG00000200390.1 misc_RNA RF00019 3 +37530 chr2 HAVANA gene 127840606 127841763 1158.0 - 0 ENSG00000274010.1 processed_pseudogene AC006011.2 2 OTTHUMG00000187678.1 +37531 chr2 ENSEMBL gene 127845236 127845341 106.0 + 0 ENSG00000202532.1 snRNA RNU6-395P 3 +37532 chr2 HAVANA gene 127846736 127847084 349.0 - 0 ENSG00000244563.1 processed_pseudogene AC006011.1 2 OTTHUMG00000153427.1 overlapping_locus +37533 chr2 ENSEMBL gene 127856890 127857147 258.0 + 0 ENSG00000273950.1 misc_RNA RF00017 3 +37534 chr2 HAVANA gene 127843551 127858157 5226.0 - 0 ENSG00000144231.10 protein_coding POLR2D 1 OTTHUMG00000131531.5 overlapping_locus +37535 chr2 HAVANA gene 127861630 127885922 4761.0 - 0 ENSG00000144233.9 protein_coding AMMECR1L 2 OTTHUMG00000131535.1 +37536 chr2 HAVANA gene 127886556 127887185 630.0 + 0 ENSG00000272667.1 lincRNA AC012306.2 2 OTTHUMG00000186044.1 +37537 chr2 HAVANA gene 127931327 127931440 114.0 + 0 ENSG00000204399.3 processed_pseudogene AC012306.1 1 OTTHUMG00000153434.1 pseudo_consens +37538 chr2 HAVANA gene 127941217 128028120 4373.0 - 0 ENSG00000136715.18 protein_coding SAP130 1 OTTHUMG00000131571.7 +37539 chr2 HAVANA gene 128067194 128067407 214.0 + 0 ENSG00000234044.1 processed_pseudogene AC108059.3 1 OTTHUMG00000153443.1 pseudo_consens +37540 chr2 ENSEMBL gene 128067800 128067901 102.0 + 0 ENSG00000200432.1 misc_RNA RF00019 3 +37541 chr2 HAVANA gene 128139792 128140516 725.0 - 0 ENSG00000229173.1 processed_pseudogene AC108059.1 1 OTTHUMG00000153442.1 pseudo_consens +37542 chr2 HAVANA gene 128151154 128151304 151.0 - 0 ENSG00000232101.1 processed_pseudogene AC108059.2 2 OTTHUMG00000153444.1 +37543 chr2 HAVANA gene 128091200 128195677 11349.0 + 0 ENSG00000136731.12 protein_coding UGGT1 1 OTTHUMG00000131570.4 +37544 chr2 HAVANA gene 128199901 128200195 295.0 + 0 ENSG00000229758.2 processed_pseudogene DYNLT3P2 1 OTTHUMG00000153544.2 pseudo_consens +37545 chr2 HAVANA gene 128203361 128203775 415.0 + 0 ENSG00000185631.7 processed_pseudogene AC017079.1 1 OTTHUMG00000153541.1 pseudo_consens +37546 chr2 HAVANA gene 128217588 128218072 485.0 + 0 ENSG00000238180.1 processed_pseudogene AC017079.2 1 OTTHUMG00000153543.1 pseudo_consens +37547 chr2 HAVANA gene 128236716 128318577 4683.0 - 0 ENSG00000136720.6 protein_coding HS6ST1 1 OTTHUMG00000153542.1 +37548 chr2 ENSEMBL gene 128350829 128350927 99.0 - 0 ENSG00000252742.1 misc_RNA RF00019 3 +37549 chr2 ENSEMBL gene 128445081 128445198 118.0 - 0 ENSG00000238379.1 rRNA_pseudogene RNA5SP103 3 +37550 chr2 HAVANA gene 128518788 128519177 390.0 - 0 ENSG00000227653.1 processed_pseudogene ISCA1P6 1 OTTHUMG00000153415.1 pseudo_consens +37551 chr2 HAVANA gene 128580491 128581576 357.0 - 0 ENSG00000237532.1 lincRNA AC012451.1 2 OTTHUMG00000153416.1 +37552 chr2 HAVANA gene 129063846 129071725 660.0 - 0 ENSG00000238277.1 lincRNA AC068483.1 1 OTTHUMG00000153414.1 +37553 chr2 HAVANA gene 129242173 129273848 2213.0 - 0 ENSG00000204460.3 lincRNA LINC01854 1 OTTHUMG00000153413.1 +37554 chr2 HAVANA gene 129496297 129496788 492.0 + 0 ENSG00000233428.1 processed_pseudogene PPIAP65 1 OTTHUMG00000153429.1 pseudo_consens +37555 chr2 HAVANA gene 129825126 129877553 2101.0 - 0 ENSG00000229536.2 lincRNA LINC02572 2 OTTHUMG00000153489.3 +37556 chr2 HAVANA gene 129922863 129934317 627.0 - 0 ENSG00000214100.8 transcribed_unprocessed_pseudogene PLAC9P1 2 OTTHUMG00000153486.4 +37557 chr2 HAVANA gene 129939848 129940217 370.0 - 0 ENSG00000234559.1 processed_pseudogene RPL22P7 1 OTTHUMG00000153488.1 pseudo_consens +37558 chr2 HAVANA gene 129923177 129946703 2398.0 + 0 ENSG00000237574.1 lincRNA LINC01856 2 OTTHUMG00000153485.1 +37559 chr2 HAVANA gene 129966592 129980466 3949.0 - 0 ENSG00000225449.3 transcribed_unprocessed_pseudogene RAB6C-AS1 2 OTTHUMG00000153499.2 +37560 chr2 HAVANA gene 129979664 129982738 3075.0 + 0 ENSG00000222014.5 protein_coding RAB6C 2 OTTHUMG00000153487.3 retrogene +37561 chr2 HAVANA gene 129988158 129990530 211.0 - 0 ENSG00000284619.1 transcribed_unprocessed_pseudogene AC079776.3 2 OTTHUMG00000192335.1 overlapping_locus +37562 chr2 HAVANA gene 129992602 129993105 504.0 - 0 ENSG00000250207.1 unprocessed_pseudogene AC079776.2 2 OTTHUMG00000153522.1 overlapping_locus +37563 chr2 HAVANA gene 129992889 129994040 1152.0 + 0 ENSG00000217289.3 processed_pseudogene AC079776.1 1 OTTHUMG00000153509.1 pseudo_consens +37564 chr2 HAVANA gene 130006200 130009123 2140.0 + 0 ENSG00000231147.2 unprocessed_pseudogene ARHGAP42P2 1 OTTHUMG00000153532.2 pseudo_consens +37565 chr2 HAVANA gene 130036958 130038422 1042.0 + 0 ENSG00000231240.1 processed_pseudogene KLF2P1 2 OTTHUMG00000153624.1 +37566 chr2 HAVANA gene 130048426 130049440 494.0 - 0 ENSG00000248313.1 unprocessed_pseudogene CYP4F27P 2 OTTHUMG00000153629.1 overlapping_locus +37567 chr2 HAVANA gene 129990456 130051131 8075.0 - 0 ENSG00000180178.10 transcribed_unprocessed_pseudogene FAR2P1 2 OTTHUMG00000153562.5 overlapping_locus +37568 chr2 HAVANA gene 130082092 130082220 129.0 - 0 ENSG00000228471.1 processed_pseudogene AC018865.2 2 OTTHUMG00000153630.1 overlapping_locus +37569 chr2 ENSEMBL gene 130109204 130109310 107.0 - 0 ENSG00000252223.1 snRNA RNU6-1049P 3 +37570 chr2 HAVANA gene 130107684 130109741 578.0 + 0 ENSG00000224087.1 antisense AC018865.1 2 OTTHUMG00000153626.1 +37571 chr2 HAVANA gene 130074030 130129222 4209.0 - 0 ENSG00000196604.12 protein_coding POTEF 2 OTTHUMG00000153628.2 ncRNA_host,overlapping_locus +37572 chr2 HAVANA gene 130129621 130139417 2252.0 + 0 ENSG00000223760.4 transcribed_unprocessed_pseudogene MED15P9 1 OTTHUMG00000153627.2 +37573 chr2 HAVANA gene 130139287 130145134 4487.0 - 0 ENSG00000152076.18 protein_coding CCDC74B 2 OTTHUMG00000131629.4 +37574 chr2 HAVANA gene 130151392 130182750 7375.0 - 0 ENSG00000136699.19 protein_coding SMPD4 1 OTTHUMG00000131624.18 +37575 chr2 HAVANA gene 130181737 130190729 1815.0 + 0 ENSG00000152082.13 protein_coding MZT2B 1 OTTHUMG00000131625.3 +37576 chr2 HAVANA gene 130191743 130198461 1542.0 - 0 ENSG00000152086.8 protein_coding TUBA3E 2 OTTHUMG00000131626.2 +37577 chr2 HAVANA gene 130202312 130212628 618.0 + 0 ENSG00000227632.2 unprocessed_pseudogene AC018804.1 2 OTTHUMG00000153751.1 +37578 chr2 HAVANA gene 130212870 130213490 621.0 - 0 ENSG00000230756.1 processed_pseudogene RHOQP3 1 OTTHUMG00000153752.2 pseudo_consens +37579 chr2 HAVANA gene 130229379 130232106 2728.0 + 0 ENSG00000213225.7 transcribed_processed_pseudogene NOC2LP1 1 OTTHUMG00000153749.2 pseudo_consens +37580 chr2 HAVANA gene 130245971 130248770 574.0 + 0 ENSG00000234398.1 unprocessed_pseudogene AC134915.1 2 OTTHUMG00000154215.1 +37581 chr2 HAVANA gene 130251568 130252559 992.0 + 0 ENSG00000236595.1 processed_pseudogene MED15P5 1 OTTHUMG00000153750.1 pseudo_consens +37582 chr2 HAVANA gene 130270440 130272272 647.0 + 0 ENSG00000237722.2 unprocessed_pseudogene MTND1P29 2 OTTHUMG00000153776.2 +37583 chr2 HAVANA gene 130272479 130273511 1033.0 + 0 ENSG00000231954.1 unprocessed_pseudogene MTND2P22 2 OTTHUMG00000153770.1 +37584 chr2 HAVANA gene 130273908 130275449 1542.0 + 0 ENSG00000236211.1 unprocessed_pseudogene MTCO1P7 2 OTTHUMG00000153771.1 +37585 chr2 HAVANA gene 130275592 130276257 666.0 + 0 ENSG00000230496.1 unprocessed_pseudogene MTCO2P7 2 OTTHUMG00000153775.1 +37586 chr2 HAVANA gene 130276507 130277187 681.0 + 0 ENSG00000232990.2 unprocessed_pseudogene MTATP6P7 2 OTTHUMG00000153767.1 overlapping_locus +37587 chr2 HAVANA gene 130277184 130277957 774.0 + 0 ENSG00000249997.1 unprocessed_pseudogene MTCO3P7 2 OTTHUMG00000153777.1 overlapping_locus +37588 chr2 HAVANA gene 130278036 130278376 341.0 + 0 ENSG00000283940.1 unprocessed_pseudogene AC068137.3 2 OTTHUMG00000191889.1 +37589 chr2 HAVANA gene 130278444 130278739 296.0 + 0 ENSG00000284171.1 unprocessed_pseudogene AC068137.4 2 OTTHUMG00000191890.1 +37590 chr2 HAVANA gene 130278757 130280110 1354.0 + 0 ENSG00000230548.1 unprocessed_pseudogene MTND4P27 2 OTTHUMG00000153772.1 +37591 chr2 HAVANA gene 130280299 130282105 1807.0 + 0 ENSG00000234934.1 unprocessed_pseudogene MTND5P29 2 OTTHUMG00000153769.1 +37592 chr2 HAVANA gene 130282085 130282606 522.0 - 0 ENSG00000248136.1 unprocessed_pseudogene MTND6P8 2 OTTHUMG00000153773.1 +37593 chr2 HAVANA gene 130282679 130283329 651.0 + 0 ENSG00000233550.1 unprocessed_pseudogene MTCYBP8 2 OTTHUMG00000153774.1 +37594 chr2 HAVANA gene 130293822 130294405 584.0 + 0 ENSG00000226915.1 processed_pseudogene AC068137.1 1 OTTHUMG00000153768.1 pseudo_consens +37595 chr2 HAVANA gene 130313934 130314411 478.0 - 0 ENSG00000271435.1 processed_pseudogene AC068137.2 1 OTTHUMG00000184424.1 pseudo_consens +37596 chr2 HAVANA gene 130330142 130330285 144.0 - 0 ENSG00000224352.1 unprocessed_pseudogene AC132479.1 2 OTTHUMG00000154217.1 +37597 chr2 HAVANA gene 130338241 130342349 3782.0 - 0 ENSG00000136710.9 protein_coding CCDC115 2 OTTHUMG00000131631.5 +37598 chr2 HAVANA gene 130342225 130347810 3861.0 + 0 ENSG00000136718.9 protein_coding IMP4 2 OTTHUMG00000131627.3 +37599 chr2 HAVANA gene 130356007 130375409 5774.0 + 0 ENSG00000072135.12 protein_coding PTPN18 2 OTTHUMG00000131630.5 +37600 chr2 HAVANA gene 130427731 130429225 1039.0 + 0 ENSG00000230646.1 processed_pseudogene KLF2P2 2 OTTHUMG00000153926.1 +37601 chr2 HAVANA gene 130416755 130431363 5364.0 - 0 ENSG00000178162.8 transcribed_unprocessed_pseudogene FAR2P2 2 OTTHUMG00000153927.4 overlapping_locus +37602 chr2 HAVANA gene 130429827 130441413 2596.0 - 0 ENSG00000239402.3 transcribed_unprocessed_pseudogene CYP4F62P 1 OTTHUMG00000153934.4 pseudo_consens,overlapping_locus +37603 chr2 ENSEMBL gene 130497743 130497849 107.0 - 0 ENSG00000251973.1 snRNA RNU6-473P 3 +37604 chr2 HAVANA gene 130459455 130509666 7023.0 - 0 ENSG00000196834.11 protein_coding POTEI 1 OTTHUMG00000153925.4 ncRNA_host +37605 chr2 ENSEMBL gene 130517049 130517312 264.0 - 0 ENSG00000274711.1 misc_RNA RF00017 3 +37606 chr2 HAVANA gene 130515997 130526691 444.0 - 0 ENSG00000225819.1 antisense AC013269.2 2 OTTHUMG00000153978.1 ncRNA_host +37607 chr2 HAVANA gene 130521197 130528604 1669.0 + 0 ENSG00000152093.7 protein_coding CFC1B 2 OTTHUMG00000153959.3 +37608 chr2 HAVANA gene 130530275 130537182 727.0 + 0 ENSG00000225341.1 antisense AC013269.1 2 OTTHUMG00000153979.1 +37609 chr2 HAVANA gene 130539095 130549883 1653.0 - 0 ENSG00000184761.8 transcribed_unprocessed_pseudogene PRSS40B 1 OTTHUMG00000153982.3 +37610 chr2 HAVANA gene 130570829 130584161 4082.0 + 0 ENSG00000183292.13 transcribed_unprocessed_pseudogene PRSS40A 2 OTTHUMG00000153992.4 +37611 chr2 HAVANA gene 130583549 130590463 695.0 - 0 ENSG00000232408.1 antisense AC140481.2 2 OTTHUMG00000153993.2 +37612 chr2 HAVANA gene 130592168 130599575 1669.0 - 0 ENSG00000136698.8 protein_coding CFC1 2 OTTHUMG00000131628.2 +37613 chr2 ENSEMBL gene 130603461 130603724 264.0 + 0 ENSG00000277668.1 misc_RNA RF00017 3 +37614 chr2 ENSEMBL gene 130622838 130622944 107.0 + 0 ENSG00000251757.1 snRNA RNU6-848P 3 +37615 chr2 HAVANA gene 130611481 130658091 3383.0 + 0 ENSG00000222038.3 protein_coding POTEJ 1 OTTHUMG00000154050.1 ncRNA_host +37616 chr2 HAVANA gene 130680050 130685863 2404.0 + 0 ENSG00000214081.8 transcribed_unprocessed_pseudogene CYP4F30P 2 OTTHUMG00000154046.2 overlapping_locus +37617 chr2 HAVANA gene 130681228 130691691 1762.0 + 0 ENSG00000282944.1 processed_transcript AC140481.3 2 OTTHUMG00000191590.1 overlapping_locus +37618 chr2 HAVANA gene 130692243 130693770 1087.0 - 0 ENSG00000223349.1 processed_pseudogene KLF2P3 2 OTTHUMG00000154048.2 +37619 chr2 HAVANA gene 130690133 130718831 1722.0 + 0 ENSG00000240253.5 transcribed_unprocessed_pseudogene FAR2P3 2 OTTHUMG00000154049.2 overlapping_locus +37620 chr2 HAVANA gene 130729070 130730336 1267.0 + 0 ENSG00000173302.5 protein_coding GPR148 2 OTTHUMG00000131655.3 +37621 chr2 HAVANA gene 130743538 130755879 1078.0 - 0 ENSG00000229797.1 antisense AC140481.1 1 OTTHUMG00000154047.1 +37622 chr2 HAVANA gene 130755435 130768134 6543.0 + 0 ENSG00000178171.10 protein_coding AMER3 2 OTTHUMG00000131637.4 +37623 chr2 HAVANA gene 130776646 130776957 312.0 + 0 ENSG00000232503.1 processed_pseudogene CYCSP8 1 OTTHUMG00000154067.1 pseudo_consens +37624 chr2 HAVANA gene 130830978 130836994 3412.0 - 0 ENSG00000233221.6 antisense AC133785.1 1 OTTHUMG00000154066.2 +37625 chr2 ENSEMBL gene 130929762 130929883 122.0 - 0 ENSG00000281159.1 scaRNA RF00426 3 +37626 chr2 ENSEMBL gene 130929762 130929884 123.0 - 0 ENSG00000281516.1 scaRNA RF00423 3 +37627 chr2 HAVANA gene 131035092 131035262 171.0 + 0 ENSG00000284479.1 protein_coding AC009477.2 2 OTTHUMG00000131657.7 overlapping_locus +37628 chr2 HAVANA gene 130836916 131047263 10611.0 + 0 ENSG00000136002.18 protein_coding ARHGEF4 1 OTTHUMG00000191895.1 overlapping_locus +37629 chr2 HAVANA gene 131047876 131093460 5435.0 - 0 ENSG00000152102.17 protein_coding FAM168B 2 OTTHUMG00000153473.3 +37630 chr2 HAVANA gene 131177618 131178946 1329.0 - 0 ENSG00000230450.1 processed_pseudogene NEK2P4 1 OTTHUMG00000153538.2 pseudo_consens +37631 chr2 HAVANA gene 131181153 131181369 217.0 - 0 ENSG00000225448.1 processed_pseudogene AC009477.1 2 OTTHUMG00000153534.1 +37632 chr2 HAVANA gene 131189834 131198007 1596.0 - 0 ENSG00000236956.2 unprocessed_pseudogene NF1P8 2 OTTHUMG00000153537.3 overlapping_locus +37633 chr2 HAVANA gene 131201142 131202941 545.0 - 0 ENSG00000248796.1 unprocessed_pseudogene MED15P8 2 OTTHUMG00000153535.1 overlapping_locus +37634 chr2 HAVANA gene 131191641 131209211 1285.0 - 0 ENSG00000285819.1 processed_transcript AC131180.1 2 OTTHUMG00000193338.1 overlapping_locus +37635 chr2 ENSEMBL gene 131229607 131229713 107.0 + 0 ENSG00000212199.1 snRNA RNU6-127P 3 +37636 chr2 HAVANA gene 131218067 131265278 4192.0 + 0 ENSG00000188219.14 protein_coding POTEE 2 OTTHUMG00000186974.1 ncRNA_host,overlapping_locus +37637 chr2 HAVANA gene 131299220 131300444 1225.0 - 0 ENSG00000236516.1 processed_pseudogene KLF2P4 2 OTTHUMG00000153557.1 +37638 chr2 HAVANA gene 131279290 131309068 3925.0 + 0 ENSG00000231431.7 transcribed_unprocessed_pseudogene FAR2P4 2 OTTHUMG00000153559.3 overlapping_locus +37639 chr2 HAVANA gene 131328176 131330857 1976.0 - 0 ENSG00000227817.4 unprocessed_pseudogene ARHGAP42P1 1 OTTHUMG00000153560.2 pseudo_consens +37640 chr2 HAVANA gene 131352214 131353239 1026.0 - 0 ENSG00000224425.2 processed_pseudogene AC073869.2 1 OTTHUMG00000153558.1 pseudo_consens +37641 chr2 HAVANA gene 131104847 131353709 6728.0 + 0 ENSG00000115762.16 protein_coding PLEKHB2 1 OTTHUMG00000131656.9 ncRNA_host,overlapping_locus +37642 chr2 HAVANA gene 131303037 131355683 335.0 + 0 ENSG00000284604.1 processed_transcript AC073869.7 2 OTTHUMG00000192333.1 overlapping_locus +37643 chr2 HAVANA gene 131335502 131355769 354.0 + 0 ENSG00000284706.1 unprocessed_pseudogene AC073869.9 2 OTTHUMG00000192334.1 overlapping_locus +37644 chr2 HAVANA gene 131361111 131364142 3032.0 - 0 ENSG00000233087.7 protein_coding RAB6D 2 OTTHUMG00000153556.3 +37645 chr2 HAVANA gene 131363364 131364881 465.0 + 0 ENSG00000283303.1 antisense AC073869.5 2 OTTHUMG00000191843.1 +37646 chr2 HAVANA gene 131369062 131369711 650.0 - 0 ENSG00000233285.1 unprocessed_pseudogene MTCYBP10 2 OTTHUMG00000153601.1 +37647 chr2 HAVANA gene 131369785 131370301 517.0 + 0 ENSG00000227275.1 unprocessed_pseudogene MTND6P10 2 OTTHUMG00000153555.1 +37648 chr2 HAVANA gene 131370306 131372075 1770.0 - 0 ENSG00000235080.2 unprocessed_pseudogene MTND5P23 2 OTTHUMG00000153599.2 +37649 chr2 HAVANA gene 131372294 131373650 1357.0 - 0 ENSG00000231777.1 unprocessed_pseudogene MTND4P21 2 OTTHUMG00000153572.1 +37650 chr2 HAVANA gene 131373647 131379675 297.0 - 0 ENSG00000284003.1 unprocessed_pseudogene AC073869.6 2 OTTHUMG00000191885.1 +37651 chr2 HAVANA gene 131379743 131380083 341.0 - 0 ENSG00000283865.1 unprocessed_pseudogene MTND3P18 2 OTTHUMG00000191886.1 +37652 chr2 HAVANA gene 131380153 131380913 761.0 - 0 ENSG00000227661.1 unprocessed_pseudogene MTCO3P18 2 OTTHUMG00000153571.1 +37653 chr2 HAVANA gene 131380916 131381590 675.0 - 0 ENSG00000236590.1 unprocessed_pseudogene MTATP6P4 2 OTTHUMG00000153570.1 +37654 chr2 HAVANA gene 131381840 131382497 658.0 - 0 ENSG00000234480.1 unprocessed_pseudogene MTCO2P18 2 OTTHUMG00000153564.2 +37655 chr2 HAVANA gene 131382643 131384061 1419.0 - 0 ENSG00000237910.1 unprocessed_pseudogene MTCO1P18 2 OTTHUMG00000153565.2 +37656 chr2 HAVANA gene 131384461 131385490 1030.0 - 0 ENSG00000234939.1 unprocessed_pseudogene MTND2P18 2 OTTHUMG00000153597.1 +37657 chr2 HAVANA gene 131385700 131386314 615.0 - 0 ENSG00000234576.2 unprocessed_pseudogene MTND1P26 2 OTTHUMG00000153566.2 +37658 chr2 HAVANA gene 131395217 131395542 326.0 - 0 ENSG00000226831.1 processed_pseudogene MED15P3 1 OTTHUMG00000153598.1 pseudo_consens +37659 chr2 HAVANA gene 131398439 131401250 800.0 - 0 ENSG00000276460.1 unprocessed_pseudogene AC073869.4 2 OTTHUMG00000187682.1 +37660 chr2 HAVANA gene 131402901 131409049 1861.0 + 0 ENSG00000223631.1 lincRNA LINC01120 2 OTTHUMG00000153602.1 +37661 chr2 HAVANA gene 131419665 131419784 120.0 - 0 ENSG00000284659.1 processed_pseudogene AC073869.8 2 OTTHUMG00000192338.1 +37662 chr2 HAVANA gene 131423801 131424867 1067.0 - 0 ENSG00000214077.4 processed_pseudogene GNAQP1 1 OTTHUMG00000153563.2 pseudo_consens +37663 chr2 HAVANA gene 131442644 131444587 1944.0 - 0 ENSG00000217950.4 processed_pseudogene NOC2LP2 1 OTTHUMG00000153596.1 pseudo_consens +37664 chr2 HAVANA gene 131460999 131461577 579.0 + 0 ENSG00000232742.3 processed_pseudogene RHOQP2 1 OTTHUMG00000153608.1 pseudo_consens +37665 chr2 HAVANA gene 131461821 131463615 580.0 - 0 ENSG00000273073.1 lincRNA AC073869.3 2 OTTHUMG00000186045.1 +37666 chr2 HAVANA gene 131476093 131482934 1598.0 + 0 ENSG00000075886.10 protein_coding TUBA3D 2 OTTHUMG00000153600.2 +37667 chr2 ENSEMBL gene 131491160 131491236 77.0 - 0 ENSG00000284149.1 miRNA MIR4784 3 +37668 chr2 HAVANA gene 131464900 131492743 4093.0 - 0 ENSG00000173272.15 protein_coding MZT2A 2 OTTHUMG00000153606.3 ncRNA_host +37669 chr2 HAVANA gene 131492813 131521573 3914.0 + 0 ENSG00000152117.17 transcribed_processed_pseudogene AC073869.1 2 OTTHUMG00000153607.7 +37670 chr2 HAVANA gene 131527675 131533666 3077.0 + 0 ENSG00000163040.14 protein_coding CCDC74A 1 OTTHUMG00000131667.5 +37671 chr2 HAVANA gene 131535187 131536988 393.0 - 0 ENSG00000224679.1 unprocessed_pseudogene MED15P4 2 OTTHUMG00000153622.1 +37672 chr2 ENSEMBL gene 131602790 131602896 107.0 + 0 ENSG00000251956.1 snRNA RNU6-617P 3 +37673 chr2 HAVANA gene 131591752 131627266 2688.0 + 0 ENSG00000204434.5 unprocessed_pseudogene POTEKP 1 OTTHUMG00000150373.1 pseudo_consens +37674 chr2 HAVANA gene 131625957 131628147 469.0 + 0 ENSG00000273588.1 unprocessed_pseudogene AC093838.1 1 OTTHUMG00000187696.1 pseudo_consens +37675 chr2 HAVANA gene 131646704 131648372 1115.0 - 0 ENSG00000270930.1 processed_pseudogene GRAMD4P8 1 OTTHUMG00000184418.1 pseudo_consens +37676 chr2 HAVANA gene 131637025 131649615 3516.0 + 0 ENSG00000224559.2 lincRNA LINC01087 2 OTTHUMG00000153621.1 +37677 chr2 HAVANA gene 131723253 131724279 1027.0 - 0 ENSG00000213222.3 processed_pseudogene AC093724.1 1 OTTHUMG00000153715.1 pseudo_consens +37678 chr2 HAVANA gene 131722375 131767404 2566.0 + 0 ENSG00000197927.12 transcribed_unprocessed_pseudogene C2orf27A 1 OTTHUMG00000131666.6 +37679 chr2 HAVANA gene 131794961 131801661 1325.0 - 0 ENSG00000186825.5 lincRNA C2orf27B 2 OTTHUMG00000154614.1 +37680 chr2 HAVANA gene 131821987 131822920 220.0 - 0 ENSG00000274353.1 unprocessed_pseudogene AC103564.3 2 OTTHUMG00000187698.1 +37681 chr2 HAVANA gene 131829801 131832031 562.0 - 0 ENSG00000229203.1 lincRNA AC103564.1 2 OTTHUMG00000153714.1 +37682 chr2 HAVANA gene 131833783 131836532 1299.0 - 0 ENSG00000232760.1 unprocessed_pseudogene AC103564.2 2 OTTHUMG00000153713.1 +37683 chr2 HAVANA gene 131958277 131965535 575.0 + 0 ENSG00000244337.2 lincRNA AJ239322.2 2 OTTHUMG00000154620.2 +37684 chr2 HAVANA gene 131964731 131979873 2209.0 - 0 ENSG00000235615.2 lincRNA AJ239322.1 1 OTTHUMG00000150221.2 +37685 chr2 HAVANA gene 131983937 131994161 840.0 - 0 ENSG00000236485.1 lincRNA LINC01945 1 OTTHUMG00000156217.1 +37686 chr2 HAVANA gene 132037787 132037993 207.0 - 0 ENSG00000226886.1 processed_pseudogene AC093787.1 2 OTTHUMG00000153595.1 +37687 chr2 HAVANA gene 132080290 132080755 466.0 - 0 ENSG00000271179.1 processed_pseudogene AC098826.3 1 OTTHUMG00000184417.1 pseudo_consens +37688 chr2 HAVANA gene 132087289 132102564 471.0 + 0 ENSG00000225594.1 unprocessed_pseudogene AC098826.1 2 OTTHUMG00000153594.1 +37689 chr2 HAVANA gene 132132856 132139429 651.0 - 0 ENSG00000227745.1 unprocessed_pseudogene AC098826.2 2 OTTHUMG00000153492.3 +37690 chr2 ENSEMBL gene 132152243 132152349 107.0 - 0 ENSG00000239108.1 snRNA RNU6-1132P 3 +37691 chr2 ENSEMBL gene 132253154 132253305 152.0 - 0 ENSG00000202174.1 rRNA_pseudogene RNA5-8SP5 3 +37692 chr2 ENSEMBL gene 132256966 132257080 115.0 - 0 ENSG00000221288.1 miRNA MIR663B 3 +37693 chr2 HAVANA gene 132147591 132257969 4947.0 - 0 ENSG00000163046.15 protein_coding ANKRD30BL 1 OTTHUMG00000153491.3 ncRNA_host +37694 chr2 HAVANA gene 132262328 132263042 715.0 + 0 ENSG00000233786.1 processed_pseudogene CDC27P1 1 OTTHUMG00000153604.1 pseudo_consens +37695 chr2 HAVANA gene 132285795 132294377 322.0 - 0 ENSG00000230803.1 lincRNA AC097532.1 2 OTTHUMG00000153603.1 +37696 chr2 HAVANA gene 132309309 132318736 1774.0 + 0 ENSG00000018607.6 unprocessed_pseudogene ZNF806 2 OTTHUMG00000153932.3 +37697 chr2 HAVANA gene 132345616 132347297 1682.0 - 0 ENSG00000272769.1 lincRNA AC097532.2 2 OTTHUMG00000186046.1 +37698 chr2 HAVANA gene 132352722 132353318 597.0 + 0 ENSG00000230992.3 processed_pseudogene FAM201B 2 OTTHUMG00000153605.1 +37699 chr2 ENSEMBL gene 132406752 132406858 107.0 - 0 ENSG00000252705.1 snRNA RNU6-175P 3 +37700 chr2 HAVANA gene 132488554 132489088 535.0 - 0 ENSG00000232349.2 processed_pseudogene YBX1P7 1 OTTHUMG00000153549.2 pseudo_consens +37701 chr2 ENSEMBL gene 132523617 132523936 320.0 + 0 ENSG00000200718.1 misc_RNA RN7SKP103 3 +37702 chr2 HAVANA gene 132416574 132646559 3387.0 + 0 ENSG00000183840.6 protein_coding GPR39 2 OTTHUMG00000131679.2 ncRNA_host +37703 chr2 HAVANA gene 132660526 132666990 374.0 + 0 ENSG00000230065.1 antisense AC010974.1 1 OTTHUMG00000153645.1 +37704 chr2 HAVANA gene 132644853 132671579 2412.0 - 0 ENSG00000150551.10 protein_coding LYPD1 2 OTTHUMG00000153609.2 +37705 chr2 HAVANA gene 132911096 132911261 166.0 - 0 ENSG00000228721.1 processed_pseudogene AC016909.1 1 OTTHUMG00000153664.1 pseudo_consens,overlapping_locus +37706 chr2 HAVANA gene 132915557 132931494 1711.0 + 0 ENSG00000233729.1 antisense AC016909.2 1 OTTHUMG00000153667.1 +37707 chr2 HAVANA gene 133117004 133119052 2049.0 + 0 ENSG00000279512.1 TEC AC011755.1 2 OTTHUMG00000187122.1 +37708 chr2 HAVANA gene 133264968 133284762 810.0 + 0 ENSG00000226953.7 antisense AC010890.1 1 OTTHUMG00000153495.3 +37709 chr2 ENSEMBL gene 133333829 133333930 102.0 + 0 ENSG00000252688.1 snRNA RNU6-579P 3 +37710 chr2 ENSEMBL gene 133391109 133391398 290.0 - 0 ENSG00000222068.1 misc_RNA RN7SKP154 3 +37711 chr2 HAVANA gene 133431666 133433897 554.0 - 0 ENSG00000232474.1 sense_intronic NCKAP5-IT1 2 OTTHUMG00000153666.1 overlapping_locus +37712 chr2 HAVANA gene 133554315 133558227 415.0 + 0 ENSG00000223430.1 lincRNA AC011243.1 2 OTTHUMG00000153665.1 +37713 chr2 HAVANA gene 132671799 133568463 9552.0 - 0 ENSG00000176771.16 protein_coding NCKAP5 1 OTTHUMG00000153573.10 ncRNA_host,overlapping_locus +37714 chr2 ENSEMBL gene 133596091 133596399 309.0 + 0 ENSG00000200708.1 misc_RNA RN7SKP93 3 +37715 chr2 ENSEMBL gene 134127125 134127192 68.0 + 0 ENSG00000263813.1 miRNA MIR3679 3 +37716 chr2 ENSEMBL gene 134231195 134231312 118.0 + 0 ENSG00000222921.1 rRNA_pseudogene RNA5SP104 3 +37717 chr2 HAVANA gene 134319654 134320078 425.0 - 0 ENSG00000234060.1 processed_pseudogene EDDM3CP 1 OTTHUMG00000153734.1 pseudo_consens +37718 chr2 HAVANA gene 134119983 134454621 8578.0 + 0 ENSG00000152127.8 protein_coding MGAT5 1 OTTHUMG00000131681.3 ncRNA_host +37719 chr2 HAVANA gene 134455759 134719000 6804.0 - 0 ENSG00000152128.13 protein_coding TMEM163 2 OTTHUMG00000131713.2 +37720 chr2 HAVANA gene 134797169 134797879 711.0 + 0 ENSG00000234682.1 processed_pseudogene VDAC2P4 1 OTTHUMG00000153732.1 pseudo_consens +37721 chr2 HAVANA gene 134816362 134816589 228.0 + 0 ENSG00000228098.1 processed_pseudogene AC110620.1 2 OTTHUMG00000153733.1 +37722 chr2 ENSEMBL gene 134857820 134857873 54.0 + 0 ENSG00000263783.1 miRNA MIR5590 3 +37723 chr2 HAVANA gene 134838547 134902034 2785.0 + 0 ENSG00000153086.13 protein_coding ACMSD 2 OTTHUMG00000131711.3 ncRNA_host +37724 chr2 HAVANA gene 134735464 134918710 910.0 - 0 ENSG00000224043.7 antisense CCNT2-AS1 1 OTTHUMG00000154855.2 +37725 chr2 HAVANA gene 134918235 134959342 9081.0 + 0 ENSG00000082258.12 protein_coding CCNT2 1 OTTHUMG00000131712.4 +37726 chr2 HAVANA gene 134964491 135047468 6073.0 - 0 ENSG00000176601.12 protein_coding MAP3K19 1 OTTHUMG00000074083.5 +37727 chr2 ENSEMBL gene 135136628 135136755 128.0 + 0 ENSG00000208308.1 snoRNA SNORA40B 3 +37728 chr2 HAVANA gene 135052265 135176394 6629.0 + 0 ENSG00000115839.17 protein_coding RAB3GAP1 2 OTTHUMG00000154889.2 ncRNA_host +37729 chr2 HAVANA gene 135510546 135511943 1398.0 - 0 ENSG00000235651.1 processed_pseudogene AC064850.1 1 OTTHUMG00000150476.1 pseudo_consens,overlapping_locus +37730 chr2 HAVANA gene 135136916 135531236 9115.0 - 0 ENSG00000121988.17 protein_coding ZRANB3 2 OTTHUMG00000150475.4 overlapping_locus +37731 chr2 ENSEMBL gene 135656477 135656579 103.0 - 0 ENSG00000201308.1 snRNA RNU6-512P 3 +37732 chr2 ENSEMBL gene 135665397 135665478 82.0 + 0 ENSG00000207654.4 miRNA MIR128-1 3 +37733 chr2 HAVANA gene 135531455 135725270 7898.0 + 0 ENSG00000048991.16 protein_coding R3HDM1 1 OTTHUMG00000131740.11 ncRNA_host +37734 chr2 HAVANA gene 135741619 135785055 5112.0 + 0 ENSG00000144224.16 protein_coding UBXN4 2 OTTHUMG00000153577.2 +37735 chr2 ENSEMBL gene 135810169 135810279 111.0 - 0 ENSG00000200664.1 misc_RNA RF00019 3 +37736 chr2 HAVANA gene 135820191 135823087 1862.0 + 0 ENSG00000226806.1 antisense AC011893.1 2 OTTHUMG00000153579.1 +37737 chr2 HAVANA gene 135787840 135837180 6586.0 - 0 ENSG00000115850.9 protein_coding LCT 2 OTTHUMG00000131738.2 ncRNA_host +37738 chr2 HAVANA gene 135839626 135876426 4118.0 - 0 ENSG00000076003.4 protein_coding MCM6 2 OTTHUMG00000131739.2 +37739 chr2 HAVANA gene 135897955 135898978 1024.0 - 0 ENSG00000214070.3 processed_pseudogene AC011999.1 1 OTTHUMG00000153581.1 pseudo_consens +37740 chr2 HAVANA gene 135906677 135986100 4014.0 - 0 ENSG00000115866.10 protein_coding DARS 2 OTTHUMG00000131741.7 +37741 chr2 HAVANA gene 135985176 136022593 6566.0 + 0 ENSG00000231890.7 antisense DARS-AS1 1 OTTHUMG00000153578.5 +37742 chr2 HAVANA gene 136077892 136078513 469.0 + 0 ENSG00000237262.1 lincRNA AC068492.1 2 OTTHUMG00000153580.1 +37743 chr2 HAVANA gene 136114349 136118165 2224.0 - 0 ENSG00000121966.6 protein_coding CXCR4 2 OTTHUMG00000153583.1 +37744 chr2 HAVANA gene 136199114 136200503 1390.0 - 0 ENSG00000227347.1 processed_pseudogene HNRNPKP2 1 OTTHUMG00000153576.1 pseudo_consens +37745 chr2 HAVANA gene 136230753 136233245 2493.0 + 0 ENSG00000279024.1 TEC AC112255.1 2 OTTHUMG00000176214.1 +37746 chr2 HAVANA gene 136329441 136329913 473.0 - 0 ENSG00000230037.1 processed_pseudogene UBBP1 1 OTTHUMG00000153582.1 pseudo_consens +37747 chr2 ENSEMBL gene 136390332 136390669 338.0 + 0 ENSG00000251976.1 misc_RNA RN7SKP141 3 +37748 chr2 HAVANA gene 136544712 136545542 527.0 + 0 ENSG00000229568.1 unprocessed_pseudogene SMC4P1 1 OTTHUMG00000153586.1 pseudo_consens +37749 chr2 ENSEMBL gene 137512098 137512210 113.0 - 0 ENSG00000212425.1 rRNA_pseudogene RNA5SP105 3 +37750 chr2 HAVANA gene 136765545 137677717 6761.0 + 0 ENSG00000144229.11 protein_coding THSD7B 2 OTTHUMG00000153590.3 +37751 chr2 ENSEMBL gene 137715332 137715440 109.0 + 0 ENSG00000222394.2 misc_RNA RF00019 3 +37752 chr2 HAVANA gene 137964020 138016364 4756.0 + 0 ENSG00000150540.13 protein_coding HNMT 2 OTTHUMG00000131751.4 +37753 chr2 HAVANA gene 138101884 138105905 553.0 + 0 ENSG00000224231.1 lincRNA LINC01832 1 OTTHUMG00000153616.1 +37754 chr2 HAVANA gene 138278574 138279210 637.0 + 0 ENSG00000233045.1 processed_pseudogene AC097523.1 1 OTTHUMG00000153620.1 pseudo_consens +37755 chr2 HAVANA gene 138288029 138288793 765.0 - 0 ENSG00000234645.3 processed_pseudogene YWHAEP5 1 OTTHUMG00000153613.1 pseudo_consens +37756 chr2 HAVANA gene 138307319 138307970 652.0 + 0 ENSG00000237939.1 processed_pseudogene AC097523.2 1 OTTHUMG00000153615.1 pseudo_consens +37757 chr2 HAVANA gene 138412066 138413318 1253.0 - 0 ENSG00000232915.1 processed_pseudogene AC097721.1 1 OTTHUMG00000153619.1 pseudo_consens +37758 chr2 HAVANA gene 138470656 138473932 826.0 + 0 ENSG00000230569.1 lincRNA AC114763.2 2 OTTHUMG00000153617.1 +37759 chr2 HAVANA gene 138418284 138501698 1313.0 - 0 ENSG00000228043.5 lincRNA AC114763.1 1 OTTHUMG00000153614.1 +37760 chr2 HAVANA gene 138501801 138573547 6468.0 + 0 ENSG00000144228.8 protein_coding SPOPL 2 OTTHUMG00000153635.1 overlapping_locus +37761 chr2 HAVANA gene 138569090 138574458 1051.0 + 0 ENSG00000241772.2 3prime_overlapping_ncRNA AC092620.2 1 OTTHUMG00000153633.2 overlapping_locus +37762 chr2 HAVANA gene 138599663 138602426 2764.0 - 0 ENSG00000260059.1 lincRNA AC092620.3 2 OTTHUMG00000176215.1 +37763 chr2 HAVANA gene 138604510 138613167 680.0 + 0 ENSG00000237772.1 lincRNA AC092620.1 2 OTTHUMG00000153631.1 +37764 chr2 HAVANA gene 138670772 138780348 1052.0 - 0 ENSG00000144227.4 protein_coding NXPH2 2 OTTHUMG00000153636.1 +37765 chr2 ENSEMBL gene 138863597 138863895 299.0 - 0 ENSG00000222826.1 misc_RNA RN7SKP286 3 +37766 chr2 HAVANA gene 138897151 138898098 948.0 + 0 ENSG00000229104.1 processed_pseudogene YY1P2 2 OTTHUMG00000153634.1 +37767 chr2 HAVANA gene 138901433 138902747 1315.0 - 0 ENSG00000232992.2 processed_pseudogene AHCYP4 1 OTTHUMG00000153632.1 pseudo_consens +37768 chr2 HAVANA gene 139366165 139379147 557.0 + 0 ENSG00000226939.1 lincRNA AC062021.1 1 OTTHUMG00000153648.1 +37769 chr2 HAVANA gene 139469775 139477747 466.0 + 0 ENSG00000229131.1 lincRNA AC016710.1 2 OTTHUMG00000153649.1 +37770 chr2 ENSEMBL gene 139511424 139511555 132.0 + 0 ENSG00000206901.1 snoRNA RF00139 3 +37771 chr2 HAVANA gene 139668547 139669305 759.0 + 0 ENSG00000235232.1 processed_pseudogene MRPS18BP2 1 OTTHUMG00000153647.1 pseudo_consens +37772 chr2 HAVANA gene 139732708 139733282 575.0 - 0 ENSG00000228374.1 processed_pseudogene AC012497.1 1 OTTHUMG00000153646.1 pseudo_consens +37773 chr2 HAVANA gene 139824896 139825877 298.0 - 0 ENSG00000223554.1 lincRNA AC078851.1 2 OTTHUMG00000153650.1 +37774 chr2 ENSEMBL gene 139982684 139982986 303.0 + 0 ENSG00000240977.3 misc_RNA RN7SL283P 3 +37775 chr2 HAVANA gene 140103583 140131780 444.0 - 0 ENSG00000224028.1 lincRNA LINC01853 2 OTTHUMG00000153651.1 +37776 chr2 HAVANA gene 140216997 140217239 243.0 - 0 ENSG00000227149.1 processed_pseudogene MTCO1P44 2 OTTHUMG00000153663.1 +37777 chr2 HAVANA gene 140217651 140220368 1012.0 - 0 ENSG00000231567.1 unprocessed_pseudogene MTND2P19 2 OTTHUMG00000153661.1 +37778 chr2 HAVANA gene 140220584 140221485 902.0 - 0 ENSG00000223921.1 processed_pseudogene MTND1P27 2 OTTHUMG00000153662.1 +37779 chr2 ENSEMBL gene 140234737 140234923 187.0 - 0 ENSG00000277306.1 misc_RNA RF02271 3 +37780 chr2 ENSEMBL gene 140586626 140586685 60.0 - 0 ENSG00000283506.1 miRNA MIR7157 3 +37781 chr2 HAVANA gene 140683360 140683888 529.0 - 0 ENSG00000236440.1 processed_pseudogene AC117947.1 1 OTTHUMG00000153668.1 pseudo_consens,overlapping_locus +37782 chr2 HAVANA gene 140898423 140899106 684.0 + 0 ENSG00000238065.1 processed_pseudogene AC010740.1 1 OTTHUMG00000153688.1 pseudo_consens +37783 chr2 ENSEMBL gene 140992543 140992659 117.0 + 0 ENSG00000201892.1 misc_RNA RF00019 3 +37784 chr2 ENSEMBL gene 141167257 141167357 101.0 - 0 ENSG00000252015.1 snRNA RNU6-904P 3 +37785 chr2 HAVANA gene 141208082 141208376 295.0 - 0 ENSG00000233329.1 processed_pseudogene AC068287.1 1 OTTHUMG00000153692.1 pseudo_consens,overlapping_locus +37786 chr2 HAVANA gene 140231423 142131701 17040.0 - 0 ENSG00000168702.17 protein_coding LRP1B 1 OTTHUMG00000131799.5 ncRNA_host,overlapping_locus +37787 chr2 HAVANA gene 142131178 142137830 416.0 - 0 ENSG00000244125.1 sense_overlapping AC078882.1 2 OTTHUMG00000153687.1 overlapping_locus +37788 chr2 HAVANA gene 142543418 142543975 558.0 + 0 ENSG00000228134.1 processed_pseudogene UBE2V1P14 1 OTTHUMG00000153672.2 pseudo_consens +37789 chr2 HAVANA gene 142854095 142855998 1904.0 + 0 ENSG00000229781.1 processed_pseudogene AC013444.1 1 OTTHUMG00000153706.2 pseudo_consens +37790 chr2 HAVANA gene 142947300 142948086 787.0 - 0 ENSG00000270390.1 processed_pseudogene AC013444.2 1 OTTHUMG00000184414.1 pseudo_consens +37791 chr2 HAVANA gene 142877498 143055832 17600.0 + 0 ENSG00000115919.14 protein_coding KYNU 1 OTTHUMG00000131829.5 +37792 chr2 HAVANA gene 143093056 143094164 1109.0 - 0 ENSG00000224288.2 processed_pseudogene MTCYBP11 2 OTTHUMG00000153818.2 +37793 chr2 HAVANA gene 143094233 143094715 483.0 + 0 ENSG00000226839.1 processed_pseudogene MTND6P11 2 OTTHUMG00000153842.1 overlapping_locus +37794 chr2 HAVANA gene 143094789 143096555 1767.0 - 0 ENSG00000224852.1 processed_pseudogene MTND5P24 2 OTTHUMG00000153819.2 +37795 chr2 HAVANA gene 143096839 143098007 1169.0 - 0 ENSG00000232772.1 processed_pseudogene MTND4P22 2 OTTHUMG00000153840.1 +37796 chr2 HAVANA gene 143098123 143098417 295.0 - 0 ENSG00000236300.2 processed_pseudogene MTND4LP12 2 OTTHUMG00000153839.2 +37797 chr2 HAVANA gene 143098484 143098829 346.0 - 0 ENSG00000227557.1 processed_pseudogene MTND3P9 2 OTTHUMG00000153937.1 +37798 chr2 HAVANA gene 143098898 143099933 714.0 - 0 ENSG00000225476.1 processed_pseudogene MTCO3P5 2 OTTHUMG00000153838.2 +37799 chr2 HAVANA gene 143099936 143100612 677.0 - 0 ENSG00000284167.1 processed_pseudogene AC013437.2 2 OTTHUMG00000191907.1 +37800 chr2 HAVANA gene 143100930 143101355 426.0 - 0 ENSG00000231766.1 processed_pseudogene MTCO2P5 2 OTTHUMG00000153841.1 +37801 chr2 HAVANA gene 143162078 143172172 414.0 - 0 ENSG00000257284.1 antisense AC013437.1 2 OTTHUMG00000169833.1 +37802 chr2 HAVANA gene 143295421 143480789 929.0 - 0 ENSG00000228655.6 antisense AC096558.1 2 OTTHUMG00000153939.2 overlapping_locus +37803 chr2 HAVANA gene 143295586 143572105 506.0 - 0 ENSG00000257640.1 antisense AC096558.2 2 OTTHUMG00000169834.2 overlapping_locus +37804 chr2 HAVANA gene 143518867 143598002 713.0 - 0 ENSG00000258268.1 antisense AC079793.1 2 OTTHUMG00000169835.1 overlapping_locus +37805 chr2 HAVANA gene 143601517 143608759 1517.0 + 0 ENSG00000283994.1 sense_intronic AC092652.3 2 OTTHUMG00000131845.8 overlapping_locus +37806 chr2 HAVANA gene 143640756 143656179 735.0 - 0 ENSG00000231758.2 antisense AC092652.1 2 OTTHUMG00000153724.2 +37807 chr2 HAVANA gene 143676165 143741294 884.0 - 0 ENSG00000257277.1 antisense AC092652.2 2 OTTHUMG00000169836.1 +37808 chr2 HAVANA gene 143091362 143768352 6226.0 + 0 ENSG00000075884.13 protein_coding ARHGAP15 2 OTTHUMG00000192163.1 overlapping_locus +37809 chr2 HAVANA gene 143766620 143776073 515.0 - 0 ENSG00000257226.1 antisense AC079584.2 2 OTTHUMG00000169837.1 +37810 chr2 HAVANA gene 143799467 143819599 464.0 + 0 ENSG00000236356.1 lincRNA AC079584.1 2 OTTHUMG00000153725.1 +37811 chr2 ENSEMBL gene 143897263 143897361 99.0 + 0 ENSG00000200287.1 misc_RNA RF00019 3 +37812 chr2 HAVANA gene 143937073 143964156 1046.0 + 0 ENSG00000232377.1 antisense AC016910.1 2 OTTHUMG00000153875.1 +37813 chr2 HAVANA gene 143938068 144332568 14162.0 - 0 ENSG00000121964.14 protein_coding GTDC1 2 OTTHUMG00000131835.6 +37814 chr2 HAVANA gene 144444848 144450450 644.0 + 0 ENSG00000283118.1 antisense AC009951.2 2 OTTHUMG00000191573.1 +37815 chr2 HAVANA gene 144494265 144496878 2614.0 - 0 ENSG00000279166.1 TEC AC009951.1 2 OTTHUMG00000187625.1 +37816 chr2 ENSEMBL gene 144518447 144518574 128.0 + 0 ENSG00000275372.1 misc_RNA RF01984 3 +37817 chr2 ENSEMBL gene 144520456 144520555 100.0 + 0 ENSG00000273537.1 misc_RNA RF01986 3 +37818 chr2 ENSEMBL gene 144521039 144521116 78.0 + 0 ENSG00000277444.1 misc_RNA RF01987 3 +37819 chr2 HAVANA gene 144517978 144521477 3138.0 + 0 ENSG00000238057.9 antisense ZEB2-AS1 1 OTTHUMG00000153879.7 ncRNA_host +37820 chr2 HAVANA gene 144364364 144524583 24970.0 - 0 ENSG00000169554.19 protein_coding ZEB2 1 OTTHUMG00000187624.9 overlapping_locus +37821 chr2 HAVANA gene 144566435 144579434 362.0 + 0 ENSG00000232606.1 lincRNA LINC01412 1 OTTHUMG00000153876.1 +37822 chr2 HAVANA gene 144688413 144690185 799.0 - 0 ENSG00000234940.1 lincRNA AC023128.1 2 OTTHUMG00000153703.1 +37823 chr2 ENSEMBL gene 144705217 144705419 203.0 + 0 ENSG00000276706.1 misc_RNA RF01992 3 +37824 chr2 HAVANA gene 144754776 144755998 1223.0 - 0 ENSG00000235352.1 processed_pseudogene AC023128.2 1 OTTHUMG00000153700.1 pseudo_consens +37825 chr2 HAVANA gene 144877734 144882033 821.0 - 0 ENSG00000268580.1 lincRNA LINC01966 2 OTTHUMG00000182522.1 +37826 chr2 HAVANA gene 144667967 145262988 15058.0 + 0 ENSG00000226674.9 lincRNA TEX41 1 OTTHUMG00000153701.9 ncRNA_host +37827 chr2 HAVANA gene 145294277 145331847 348.0 - 0 ENSG00000235435.1 lincRNA AC096666.1 2 OTTHUMG00000153704.2 +37828 chr2 HAVANA gene 145337230 145338057 828.0 + 0 ENSG00000214064.3 processed_pseudogene RPL6P5 1 OTTHUMG00000153705.1 pseudo_consens +37829 chr2 HAVANA gene 145569294 145588024 833.0 - 0 ENSG00000225107.1 lincRNA AC092484.1 2 OTTHUMG00000153709.1 +37830 chr2 HAVANA gene 145600907 145603423 407.0 - 0 ENSG00000226218.1 lincRNA AC079163.1 2 OTTHUMG00000153710.1 +37831 chr2 HAVANA gene 145826285 145827830 1546.0 - 0 ENSG00000234119.1 processed_pseudogene AC079248.1 1 OTTHUMG00000153721.1 pseudo_consens +37832 chr2 HAVANA gene 145874520 145874845 326.0 - 0 ENSG00000279876.1 TEC AC079248.2 2 OTTHUMG00000176216.1 +37833 chr2 HAVANA gene 145915090 145931146 747.0 + 0 ENSG00000233842.1 lincRNA AC062031.1 2 OTTHUMG00000153722.1 +37834 chr2 ENSEMBL gene 146145156 146145217 62.0 + 0 ENSG00000251905.1 snRNA RNU7-2P 3 +37835 chr2 HAVANA gene 146194296 146194821 526.0 + 0 ENSG00000230559.1 processed_pseudogene RPL17P12 1 OTTHUMG00000153720.1 pseudo_consens +37836 chr2 HAVANA gene 146477427 146478113 687.0 + 0 ENSG00000227134.1 processed_pseudogene AC093084.1 1 OTTHUMG00000153723.1 pseudo_consens +37837 chr2 HAVANA gene 146587506 146589310 1805.0 + 0 ENSG00000198526.7 processed_pseudogene PABPC1P2 1 OTTHUMG00000153707.1 pseudo_consens +37838 chr2 HAVANA gene 146833501 146834038 538.0 - 0 ENSG00000271583.1 processed_pseudogene AC103881.1 1 OTTHUMG00000184515.1 pseudo_consens +37839 chr2 HAVANA gene 146837749 146850310 806.0 + 0 ENSG00000231040.1 lincRNA LINC01911 1 OTTHUMG00000153708.1 +37840 chr2 HAVANA gene 146879909 146898218 355.0 + 0 ENSG00000227902.2 lincRNA AC062032.1 2 OTTHUMG00000153712.1 +37841 chr2 ENSEMBL gene 147408342 147408448 107.0 + 0 ENSG00000207225.1 snRNA RNU6-692P 3 +37842 chr2 ENSEMBL gene 147472133 147472243 111.0 - 0 ENSG00000207161.1 misc_RNA RF00019 3 +37843 chr2 ENSEMBL gene 147495438 147495540 103.0 - 0 ENSG00000202074.1 snRNA RNU6-715P 3 +37844 chr2 ENSEMBL gene 147713455 147713554 100.0 - 0 ENSG00000253083.1 rRNA_pseudogene RNA5SP106 3 +37845 chr2 HAVANA gene 147810346 147810777 432.0 + 0 ENSG00000229143.1 processed_pseudogene AC009480.2 1 OTTHUMG00000153778.1 pseudo_consens +37846 chr2 ENSEMBL gene 147877422 147877528 107.0 + 0 ENSG00000212389.1 snRNA RNU6-1275P 3 +37847 chr2 HAVANA gene 147899401 147902956 412.0 - 0 ENSG00000223911.1 antisense AC009480.1 2 OTTHUMG00000150604.1 +37848 chr2 HAVANA gene 147844517 147930826 6770.0 + 0 ENSG00000121989.14 protein_coding ACVR2A 2 OTTHUMG00000150603.2 ncRNA_host +37849 chr2 HAVANA gene 147930397 148021604 8915.0 - 0 ENSG00000115947.13 protein_coding ORC4 2 OTTHUMG00000131849.9 +37850 chr2 HAVANA gene 148044380 148044894 515.0 + 0 ENSG00000281469.1 TEC AC019226.1 2 OTTHUMG00000189694.1 +37851 chr2 HAVANA gene 148062154 148062577 424.0 + 0 ENSG00000281772.1 TEC AC019226.2 2 OTTHUMG00000189695.1 +37852 chr2 ENSEMBL gene 148260574 148260708 135.0 - 0 ENSG00000212181.1 snoRNA RF00554 3 +37853 chr2 HAVANA gene 148295656 148296679 1024.0 - 0 ENSG00000224007.1 processed_pseudogene AC019070.1 1 OTTHUMG00000153786.1 pseudo_consens +37854 chr2 HAVANA gene 148021011 148516971 24256.0 + 0 ENSG00000204406.13 protein_coding MBD5 1 OTTHUMG00000150440.15 +37855 chr2 HAVANA gene 148595158 148595328 171.0 + 0 ENSG00000232238.1 processed_pseudogene RPS29P8 1 OTTHUMG00000153740.1 pseudo_consens +37856 chr2 HAVANA gene 148644440 148787568 5582.0 + 0 ENSG00000135999.11 protein_coding EPC2 1 OTTHUMG00000153739.5 +37857 chr2 ENSEMBL gene 148825691 148825835 145.0 - 0 ENSG00000222126.1 snRNA RNU2-9P 3 +37858 chr2 HAVANA gene 148863564 148863804 241.0 - 0 ENSG00000223962.1 processed_pseudogene UBBP3 1 OTTHUMG00000153738.1 pseudo_consens +37859 chr2 HAVANA gene 148870024 148870381 358.0 - 0 ENSG00000228848.3 processed_pseudogene AC105402.2 1 OTTHUMG00000153735.1 pseudo_consens,overlapping_locus +37860 chr2 HAVANA gene 148872253 148872797 545.0 - 0 ENSG00000226340.1 processed_pseudogene AC105402.1 1 OTTHUMG00000153736.1 pseudo_consens,overlapping_locus +37861 chr2 HAVANA gene 148866470 148888823 4156.0 - 0 ENSG00000231079.7 antisense AC105402.3 2 OTTHUMG00000153737.5 overlapping_locus +37862 chr2 HAVANA gene 148875250 149026759 9215.0 + 0 ENSG00000168280.16 protein_coding KIF5C 2 OTTHUMG00000153779.6 +37863 chr2 HAVANA gene 149068596 149068910 315.0 - 0 ENSG00000228236.2 processed_pseudogene TXNP5 1 OTTHUMG00000153761.2 pseudo_consens +37864 chr2 HAVANA gene 149038107 149215262 3771.0 + 0 ENSG00000150556.16 protein_coding LYPD6B 1 OTTHUMG00000153743.3 +37865 chr2 HAVANA gene 149320593 149321436 844.0 + 0 ENSG00000224337.1 processed_pseudogene FAM8A3P 1 OTTHUMG00000153744.1 pseudo_consens +37866 chr2 HAVANA gene 149439897 149440427 531.0 + 0 ENSG00000223604.1 processed_pseudogene AC007394.1 1 OTTHUMG00000154547.2 pseudo_consens,overlapping_locus +37867 chr2 HAVANA gene 149329985 149474148 5033.0 + 0 ENSG00000187123.14 protein_coding LYPD6 2 OTTHUMG00000131852.6 overlapping_locus +37868 chr2 HAVANA gene 149569634 149587816 2191.0 - 0 ENSG00000168288.12 protein_coding MMADHC 2 OTTHUMG00000155558.3 +37869 chr2 ENSEMBL gene 149610668 149610774 107.0 - 0 ENSG00000207270.1 snRNA RNU6-601P 3 +37870 chr2 HAVANA gene 149587196 149848233 1022.0 + 0 ENSG00000231969.1 antisense AC007364.1 1 OTTHUMG00000153745.1 +37871 chr2 HAVANA gene 149767506 149859191 2153.0 - 0 ENSG00000162947.4 lincRNA LINC01931 2 OTTHUMG00000153746.2 +37872 chr2 HAVANA gene 150234892 150257007 564.0 - 0 ENSG00000231420.1 lincRNA LINC01817 2 OTTHUMG00000153759.1 +37873 chr2 HAVANA gene 150171423 150301080 368.0 + 0 ENSG00000230645.1 lincRNA LINC01818 2 OTTHUMG00000153755.1 +37874 chr2 HAVANA gene 150468195 150539011 3594.0 - 0 ENSG00000115963.13 protein_coding RND3 2 OTTHUMG00000131859.4 +37875 chr2 HAVANA gene 150566134 150568080 545.0 + 0 ENSG00000237220.1 lincRNA AC104777.3 2 OTTHUMG00000153758.1 +37876 chr2 HAVANA gene 150552532 150572221 2528.0 - 0 ENSG00000236049.1 lincRNA LINC01920 2 OTTHUMG00000153754.1 +37877 chr2 HAVANA gene 150595102 150620067 568.0 - 0 ENSG00000232359.1 lincRNA AC104777.2 2 OTTHUMG00000153756.1 +37878 chr2 HAVANA gene 150612381 150635348 1354.0 + 0 ENSG00000224048.5 lincRNA AC104777.1 2 OTTHUMG00000153757.1 +37879 chr2 HAVANA gene 150982506 151003474 657.0 + 0 ENSG00000228064.1 antisense AC023469.2 2 OTTHUMG00000153782.1 +37880 chr2 HAVANA gene 151001220 151048774 469.0 - 0 ENSG00000222031.1 lincRNA AC023469.1 2 OTTHUMG00000153783.1 +37881 chr2 HAVANA gene 151117955 151186209 576.0 - 0 ENSG00000236885.1 lincRNA AC018731.1 2 OTTHUMG00000153781.2 +37882 chr2 HAVANA gene 151186188 151186595 408.0 + 0 ENSG00000213201.3 processed_pseudogene FABP5P10 1 OTTHUMG00000153780.1 pseudo_consens +37883 chr2 HAVANA gene 151247940 151261879 4717.0 - 0 ENSG00000184898.6 protein_coding RBM43 2 OTTHUMG00000131866.2 +37884 chr2 HAVANA gene 151270465 151290057 3480.0 - 0 ENSG00000123609.10 protein_coding NMI 2 OTTHUMG00000131867.4 +37885 chr2 ENSEMBL gene 151368334 151368411 78.0 + 0 ENSG00000264684.1 miRNA MIR4773-1 3 +37886 chr2 ENSEMBL gene 151368334 151368411 78.0 - 0 ENSG00000283569.1 miRNA MIR4773-2 3 +37887 chr2 ENSEMBL gene 151372003 151372287 285.0 + 0 ENSG00000242113.3 misc_RNA RN7SL124P 3 +37888 chr2 HAVANA gene 151357592 151380048 1579.0 + 0 ENSG00000123610.4 protein_coding TNFAIP6 2 OTTHUMG00000131884.3 ncRNA_host +37889 chr2 HAVANA gene 151409883 151508013 18166.0 + 0 ENSG00000080345.17 protein_coding RIF1 2 OTTHUMG00000131886.6 +37890 chr2 HAVANA gene 151485336 151734487 30567.0 - 0 ENSG00000183091.19 protein_coding NEB 1 OTTHUMG00000153784.16 +37891 chr2 HAVANA gene 151788984 151828492 6716.0 - 0 ENSG00000162980.16 protein_coding ARL5A 1 OTTHUMG00000131887.7 overlapping_locus +37892 chr2 HAVANA gene 151802651 151973949 3287.0 - 0 ENSG00000283228.1 protein_coding AC068547.1 2 OTTHUMG00000191700.3 overlapping_locus +37893 chr2 HAVANA gene 151832768 152099475 36268.0 - 0 ENSG00000182389.19 protein_coding CACNB4 1 OTTHUMG00000155091.19 overlapping_locus +37894 chr2 HAVANA gene 152098328 152109202 507.0 + 0 ENSG00000225214.1 antisense AC079790.1 2 OTTHUMG00000155109.1 +37895 chr2 HAVANA gene 152131555 152131845 291.0 + 0 ENSG00000234272.1 processed_pseudogene RPL30P2 1 OTTHUMG00000155110.1 pseudo_consens +37896 chr2 HAVANA gene 152116801 152175992 7005.0 - 0 ENSG00000115145.9 protein_coding STAM2 2 OTTHUMG00000131885.3 +37897 chr2 ENSEMBL gene 152284350 152284460 111.0 - 0 ENSG00000199884.1 misc_RNA RF00019 3 +37898 chr2 HAVANA gene 152389937 152390630 694.0 + 0 ENSG00000213197.3 processed_pseudogene AC012066.1 1 OTTHUMG00000154032.1 pseudo_consens,overlapping_locus +37899 chr2 HAVANA gene 152539197 152539427 231.0 - 0 ENSG00000270776.1 processed_pseudogene AC012443.1 1 OTTHUMG00000184351.1 pseudo_consens +37900 chr2 HAVANA gene 152335237 152649834 6519.0 + 0 ENSG00000157827.19 protein_coding FMNL2 1 OTTHUMG00000154035.6 overlapping_locus +37901 chr2 HAVANA gene 152651593 152717997 9536.0 - 0 ENSG00000196504.16 protein_coding PRPF40A 2 OTTHUMG00000154031.13 +37902 chr2 HAVANA gene 152717893 152761253 3349.0 + 0 ENSG00000177917.10 protein_coding ARL6IP6 2 OTTHUMG00000131901.4 +37903 chr2 HAVANA gene 152850653 152850824 172.0 - 0 ENSG00000234932.2 processed_pseudogene AC009969.1 2 OTTHUMG00000154033.2 +37904 chr2 HAVANA gene 152876820 152877767 948.0 + 0 ENSG00000226213.1 processed_pseudogene UBQLN4P2 1 OTTHUMG00000154034.1 pseudo_consens +37905 chr2 HAVANA gene 153158938 153159683 746.0 + 0 ENSG00000214025.2 processed_pseudogene ATP5PBP4 1 OTTHUMG00000153824.1 pseudo_consens +37906 chr2 HAVANA gene 153171987 153201726 383.0 - 0 ENSG00000224612.1 lincRNA AC079150.1 2 OTTHUMG00000153822.2 +37907 chr2 HAVANA gene 153208086 153208163 78.0 - 0 ENSG00000226338.1 processed_pseudogene AC079150.2 2 OTTHUMG00000153826.1 +37908 chr2 HAVANA gene 153337705 153357422 357.0 + 0 ENSG00000227708.1 lincRNA LINC01850 2 OTTHUMG00000153820.1 +37909 chr2 HAVANA gene 153370612 153371064 453.0 + 0 ENSG00000214024.2 processed_pseudogene RPL23AP29 1 OTTHUMG00000153823.1 pseudo_consens +37910 chr2 HAVANA gene 153420677 153421957 1281.0 - 0 ENSG00000242575.1 transcribed_processed_pseudogene AC012501.2 1 OTTHUMG00000153825.2 pseudo_consens,overlapping_locus +37911 chr2 ENSEMBL gene 153446813 153446883 71.0 - 0 ENSG00000200377.1 snoRNA RF00275 3 +37912 chr2 HAVANA gene 153477338 153478808 1471.0 - 0 ENSG00000177519.3 protein_coding RPRM 2 OTTHUMG00000131905.1 overlapping_locus +37913 chr2 HAVANA gene 153421616 153593288 984.0 - 0 ENSG00000227400.2 sense_overlapping AC012501.1 2 OTTHUMG00000153821.1 ncRNA_host,overlapping_locus +37914 chr2 HAVANA gene 153761450 153762646 1197.0 - 0 ENSG00000236917.1 processed_pseudogene DNAJA1P2 1 OTTHUMG00000153846.1 pseudo_consens +37915 chr2 HAVANA gene 154286589 154287425 837.0 + 0 ENSG00000230251.1 processed_pseudogene PHBP4 1 OTTHUMG00000153847.2 pseudo_consens,overlapping_locus +37916 chr2 HAVANA gene 153871913 154453849 6520.0 + 0 ENSG00000144278.14 protein_coding GALNT13 1 OTTHUMG00000131917.4 overlapping_locus +37917 chr2 HAVANA gene 154435853 154457438 2362.0 - 0 ENSG00000224675.1 antisense AC009227.1 2 OTTHUMG00000153848.2 +37918 chr2 HAVANA gene 154459857 154460820 511.0 + 0 ENSG00000238004.1 lincRNA AC009227.2 2 OTTHUMG00000153849.1 +37919 chr2 ENSEMBL gene 154590407 154590528 122.0 + 0 ENSG00000223290.1 rRNA_pseudogene RNA5SP107 3 +37920 chr2 HAVANA gene 154696462 154697817 432.0 - 0 ENSG00000235949.1 antisense AC061961.1 1 OTTHUMG00000153808.1 +37921 chr2 HAVANA gene 154698299 154858352 5067.0 + 0 ENSG00000162989.4 protein_coding KCNJ3 2 OTTHUMG00000131937.3 +37922 chr2 HAVANA gene 154940541 154941067 527.0 - 0 ENSG00000228837.2 processed_pseudogene CBX3P6 1 OTTHUMG00000150419.1 pseudo_consens +37923 chr2 HAVANA gene 154965513 154968003 393.0 - 0 ENSG00000230991.1 lincRNA AC092625.1 2 OTTHUMG00000153807.1 +37924 chr2 ENSEMBL gene 155089439 155089538 100.0 - 0 ENSG00000223197.1 snRNA RNU6-1001P 3 +37925 chr2 HAVANA gene 155263458 155263724 267.0 - 0 ENSG00000232982.1 processed_pseudogene MTCO1P45 2 OTTHUMG00000153812.1 +37926 chr2 HAVANA gene 155264163 155264823 661.0 - 0 ENSG00000229701.1 processed_pseudogene MTND2P20 2 OTTHUMG00000153817.1 +37927 chr2 HAVANA gene 155269633 155270134 502.0 + 0 ENSG00000227682.2 transcribed_processed_pseudogene ATP5F1AP2 2 OTTHUMG00000153811.4 +37928 chr2 HAVANA gene 155311023 155311409 387.0 + 0 ENSG00000233709.1 processed_pseudogene MTND4P28 2 OTTHUMG00000153816.1 +37929 chr2 HAVANA gene 155311697 155313427 1731.0 + 0 ENSG00000233039.1 processed_pseudogene MTND5P30 2 OTTHUMG00000153814.1 +37930 chr2 HAVANA gene 155313440 155313958 519.0 - 0 ENSG00000233248.1 processed_pseudogene MTND6P9 2 OTTHUMG00000153813.1 +37931 chr2 HAVANA gene 155314066 155314368 303.0 + 0 ENSG00000229935.1 processed_pseudogene MTCYBP9 2 OTTHUMG00000153815.1 +37932 chr2 ENSEMBL gene 155330421 155330527 107.0 + 0 ENSG00000206718.1 snRNA RNU6-546P 3 +37933 chr2 HAVANA gene 156033247 156034080 834.0 - 0 ENSG00000235548.1 processed_pseudogene AC073551.1 1 OTTHUMG00000153835.1 pseudo_consens +37934 chr2 HAVANA gene 156011530 156254950 2716.0 - 0 ENSG00000226383.6 lincRNA LINC01876 1 OTTHUMG00000153834.2 +37935 chr2 HAVANA gene 156305108 156320255 679.0 - 0 ENSG00000282440.1 lincRNA AC074099.1 2 OTTHUMG00000191454.1 +37936 chr2 HAVANA gene 156324432 156342348 3967.0 - 0 ENSG00000153234.13 protein_coding NR4A2 1 OTTHUMG00000131950.9 +37937 chr2 HAVANA gene 156435290 156613735 7155.0 + 0 ENSG00000115159.15 protein_coding GPD2 2 OTTHUMG00000131951.6 +37938 chr2 HAVANA gene 156655224 156695659 1941.0 + 0 ENSG00000283436.1 lincRNA LINC01958 2 OTTHUMG00000191869.1 +37939 chr2 HAVANA gene 156777706 156778372 667.0 - 0 ENSG00000238069.1 processed_pseudogene RPLP0P7 1 OTTHUMG00000153844.1 pseudo_consens +37940 chr2 HAVANA gene 157210847 157211539 693.0 - 0 ENSG00000213194.3 processed_pseudogene CDK7P1 1 OTTHUMG00000133576.1 pseudo_consens +37941 chr2 ENSEMBL gene 157298807 157299158 352.0 - 0 ENSG00000222404.1 misc_RNA RN7SKP281 3 +37942 chr2 HAVANA gene 157257598 157314211 6818.0 + 0 ENSG00000136542.8 protein_coding GALNT5 1 OTTHUMG00000131965.2 +37943 chr2 HAVANA gene 157318625 157327713 4393.0 - 0 ENSG00000136541.14 protein_coding ERMN 2 OTTHUMG00000153843.6 +37944 chr2 HAVANA gene 157379724 157380414 691.0 - 0 ENSG00000230562.3 processed_pseudogene FAM133DP 1 OTTHUMG00000153949.1 pseudo_consens +37945 chr2 HAVANA gene 157414619 157488961 3428.0 - 0 ENSG00000115165.9 protein_coding CYTIP 1 OTTHUMG00000154551.6 +37946 chr2 HAVANA gene 157526767 157629005 9195.0 - 0 ENSG00000123612.15 protein_coding ACVR1C 2 OTTHUMG00000131964.3 +37947 chr2 HAVANA gene 157725708 157736005 545.0 - 0 ENSG00000234584.1 lincRNA AC019186.1 2 OTTHUMG00000153914.1 +37948 chr2 HAVANA gene 157736444 157875862 3990.0 - 0 ENSG00000115170.13 protein_coding ACVR1 2 OTTHUMG00000131967.10 +37949 chr2 HAVANA gene 157877683 157878565 883.0 + 0 ENSG00000270557.1 lincRNA AC013731.1 2 OTTHUMG00000185078.1 overlapping_locus +37950 chr2 ENSEMBL gene 157912772 157912885 114.0 + 0 ENSG00000251980.1 snRNA RNU6-436P 3 +37951 chr2 HAVANA gene 157917712 157918371 660.0 + 0 ENSG00000271320.1 lincRNA AC091488.1 2 OTTHUMG00000185079.1 overlapping_locus +37952 chr2 HAVANA gene 157961410 157962888 1479.0 - 0 ENSG00000228937.1 processed_pseudogene AC005539.1 1 OTTHUMG00000153913.1 pseudo_consens +37953 chr2 ENSEMBL gene 157985789 157985894 106.0 - 0 ENSG00000212410.1 snRNA RNU6-932P 3 +37954 chr2 HAVANA gene 158065545 158066059 515.0 + 0 ENSG00000231158.1 processed_pseudogene PTP4A1P1 1 OTTHUMG00000153916.1 pseudo_consens,overlapping_locus +37955 chr2 HAVANA gene 158127957 158133988 357.0 + 0 ENSG00000237327.1 sense_intronic UPP2-IT1 2 OTTHUMG00000153915.1 overlapping_locus +37956 chr2 HAVANA gene 157876702 158136154 2957.0 + 0 ENSG00000007001.12 protein_coding UPP2 2 OTTHUMG00000131969.3 ncRNA_host,overlapping_locus +37957 chr2 HAVANA gene 158166650 158236169 795.0 + 0 ENSG00000227480.2 antisense CCDC148-AS1 2 OTTHUMG00000153964.2 +37958 chr2 HAVANA gene 158419955 158425303 751.0 + 0 ENSG00000234890.1 unprocessed_pseudogene HNRNPDLP2 1 OTTHUMG00000153974.1 pseudo_consens +37959 chr2 ENSEMBL gene 158447166 158447461 296.0 - 0 ENSG00000243723.3 misc_RNA RN7SL393P 3 +37960 chr2 HAVANA gene 158171081 158456753 3790.0 - 0 ENSG00000153237.17 protein_coding CCDC148 2 OTTHUMG00000153973.1 ncRNA_host +37961 chr2 HAVANA gene 158548425 158549224 800.0 + 0 ENSG00000227331.1 processed_pseudogene AC005042.1 1 OTTHUMG00000153963.1 pseudo_consens,overlapping_locus +37962 chr2 HAVANA gene 158456964 158682879 9525.0 + 0 ENSG00000144283.21 protein_coding PKP4 2 OTTHUMG00000153969.5 overlapping_locus +37963 chr2 HAVANA gene 158703287 158703460 174.0 + 0 ENSG00000231675.1 processed_pseudogene AC005042.3 2 OTTHUMG00000153967.1 overlapping_locus +37964 chr2 HAVANA gene 158658337 158735002 5874.0 - 0 ENSG00000204380.4 antisense PKP4-AS1 2 OTTHUMG00000153965.2 +37965 chr2 HAVANA gene 158685903 158753775 510.0 + 0 ENSG00000228586.1 lincRNA AC005042.2 2 OTTHUMG00000153971.1 overlapping_locus +37966 chr2 HAVANA gene 158853755 158854576 822.0 + 0 ENSG00000243792.1 transcribed_unprocessed_pseudogene OR7E89P 1 OTTHUMG00000153966.1 pseudo_consens,overlapping_locus +37967 chr2 HAVANA gene 158795317 158862781 1325.0 + 0 ENSG00000163331.11 protein_coding DAPL1 1 OTTHUMG00000153970.1 overlapping_locus +37968 chr2 HAVANA gene 158862311 158863285 975.0 + 0 ENSG00000251491.2 transcribed_unprocessed_pseudogene OR7E28P 2 OTTHUMG00000153968.2 overlapping_locus +37969 chr2 HAVANA gene 158874642 158875670 1029.0 + 0 ENSG00000188668.4 unprocessed_pseudogene OR7E90P 1 OTTHUMG00000153972.1 pseudo_consens +37970 chr2 ENSEMBL gene 158935798 158935985 188.0 - 0 ENSG00000222300.1 snRNA RNU2-21P 3 +37971 chr2 HAVANA gene 159003975 159004320 346.0 + 0 ENSG00000213189.5 processed_pseudogene BTF3L4P2 1 OTTHUMG00000153946.2 pseudo_consens,overlapping_locus +37972 chr2 ENSEMBL gene 159027036 159027142 107.0 - 0 ENSG00000202029.1 snRNA RNU6-580P 3 +37973 chr2 HAVANA gene 159056005 159056859 530.0 - 0 ENSG00000226878.2 processed_pseudogene GSTM3P2 1 OTTHUMG00000154040.3 pseudo_consens +37974 chr2 ENSEMBL gene 159186835 159186901 67.0 + 0 ENSG00000275141.1 miRNA MIR6888 3 +37975 chr2 HAVANA gene 158968671 159232659 14884.0 + 0 ENSG00000115183.14 protein_coding TANC1 2 OTTHUMG00000153945.2 ncRNA_host,overlapping_locus +37976 chr2 HAVANA gene 159235793 159286799 2135.0 - 0 ENSG00000196151.10 protein_coding WDSUB1 1 OTTHUMG00000132028.3 +37977 chr2 HAVANA gene 159386367 159404636 1512.0 + 0 ENSG00000223642.7 antisense AC008277.1 2 OTTHUMG00000154042.4 +37978 chr2 HAVANA gene 159444117 159444913 797.0 + 0 ENSG00000270893.1 processed_pseudogene AC008277.2 1 OTTHUMG00000184262.1 pseudo_consens +37979 chr2 HAVANA gene 159462417 159463256 840.0 - 0 ENSG00000225369.1 processed_pseudogene AC009506.2 1 OTTHUMG00000154043.2 pseudo_consens,overlapping_locus +37980 chr2 ENSEMBL gene 159536244 159536346 103.0 - 0 ENSG00000207117.1 misc_RNA RF00019 3 +37981 chr2 HAVANA gene 159318979 159616692 20370.0 - 0 ENSG00000123636.17 protein_coding BAZ2B 1 OTTHUMG00000132027.8 ncRNA_host,overlapping_locus +37982 chr2 HAVANA gene 159615296 159617082 1494.0 + 0 ENSG00000224152.1 antisense AC009506.1 1 OTTHUMG00000154041.1 +37983 chr2 HAVANA gene 159689217 159690291 765.0 - 0 ENSG00000230783.1 processed_pseudogene AC009961.3 1 OTTHUMG00000154070.3 pseudo_consens,overlapping_locus +37984 chr2 HAVANA gene 159670708 159712435 2724.0 - 0 ENSG00000226266.6 lincRNA AC009961.1 2 OTTHUMG00000154081.2 overlapping_locus +37985 chr2 HAVANA gene 159712457 159771027 6288.0 + 0 ENSG00000136536.14 protein_coding MARCH7 1 OTTHUMG00000132029.6 +37986 chr2 HAVANA gene 159768630 159798255 4075.0 - 0 ENSG00000241399.6 protein_coding CD302 2 OTTHUMG00000154080.1 overlapping_locus +37987 chr2 HAVANA gene 159812234 159814009 251.0 - 0 ENSG00000227055.1 processed_pseudogene AC009961.2 1 OTTHUMG00000154179.1 pseudo_consens,overlapping_locus +37988 chr2 HAVANA gene 159771851 159904710 5650.0 - 0 ENSG00000248672.5 protein_coding LY75-CD302 1 OTTHUMG00000161661.2 overlapping_locus +37989 chr2 HAVANA gene 159803355 159904749 8798.0 - 0 ENSG00000054219.10 protein_coding LY75 2 OTTHUMG00000132025.3 overlapping_locus +37990 chr2 HAVANA gene 159932006 160062610 15357.0 - 0 ENSG00000153246.12 protein_coding PLA2R1 2 OTTHUMG00000154087.3 +37991 chr2 HAVANA gene 160099666 160200313 4687.0 - 0 ENSG00000115221.11 protein_coding ITGB6 1 OTTHUMG00000132026.6 +37992 chr2 HAVANA gene 160257718 160271880 614.0 - 0 ENSG00000285373.1 lincRNA LINC02478 2 OTTHUMG00000192422.1 overlapping_locus +37993 chr2 HAVANA gene 160141981 160271888 2183.0 - 0 ENSG00000285155.1 processed_transcript AC092153.1 2 OTTHUMG00000192421.1 overlapping_locus +37994 chr2 ENSEMBL gene 160407810 160407882 73.0 - 0 ENSG00000283734.1 miRNA MIR4785 3 +37995 chr2 HAVANA gene 160272151 160493794 11765.0 - 0 ENSG00000153250.19 protein_coding RBMS1 2 OTTHUMG00000132031.9 ncRNA_host +37996 chr2 HAVANA gene 160849313 160850676 1364.0 - 0 ENSG00000279844.1 TEC AC096656.1 2 OTTHUMG00000176253.1 +37997 chr2 ENSEMBL gene 160877547 160877850 304.0 + 0 ENSG00000244372.3 misc_RNA RN7SL423P 3 +37998 chr2 HAVANA gene 161048606 161050546 1941.0 - 0 ENSG00000232337.1 processed_pseudogene AC009313.2 1 OTTHUMG00000153885.1 pseudo_consens +37999 chr2 HAVANA gene 161096231 161160224 503.0 - 0 ENSG00000224467.1 antisense AC009313.1 1 OTTHUMG00000151886.1 +38000 chr2 HAVANA gene 161136908 161236221 5579.0 + 0 ENSG00000136560.13 protein_coding TANK 1 OTTHUMG00000132037.5 +38001 chr2 HAVANA gene 161244739 161249050 2377.0 + 0 ENSG00000227403.1 lincRNA LINC01806 1 OTTHUMG00000151885.1 +38002 chr2 HAVANA gene 161281902 161282618 717.0 + 0 ENSG00000225813.1 processed_pseudogene AC009299.1 2 OTTHUMG00000153884.1 +38003 chr2 HAVANA gene 161222785 161308303 3048.0 - 0 ENSG00000235724.8 antisense AC009299.3 1 OTTHUMG00000151884.6 +38004 chr2 HAVANA gene 161340816 161341326 511.0 - 0 ENSG00000232320.6 processed_pseudogene AC009299.2 2 OTTHUMG00000153886.2 +38005 chr2 ENSEMBL gene 161409554 161409670 117.0 + 0 ENSG00000271924.1 rRNA_pseudogene RNA5SP108 3 +38006 chr2 HAVANA gene 161308038 161411717 7698.0 + 0 ENSG00000115233.11 protein_coding PSMD14 2 OTTHUMG00000153882.2 +38007 chr2 HAVANA gene 161422659 161423577 619.0 - 0 ENSG00000224076.5 antisense AC009487.1 1 OTTHUMG00000153883.1 +38008 chr2 HAVANA gene 161416094 161425870 9600.0 + 0 ENSG00000136535.14 protein_coding TBR1 2 OTTHUMG00000153888.2 overlapping_locus +38009 chr2 HAVANA gene 161424015 161428774 560.0 + 0 ENSG00000251621.1 3prime_overlapping_ncRNA AC009487.2 2 OTTHUMG00000153887.3 overlapping_locus +38010 chr2 HAVANA gene 161433874 161437458 3585.0 + 0 ENSG00000280105.1 TEC AC009487.3 2 OTTHUMG00000185593.1 overlapping_locus +38011 chr2 HAVANA gene 161500885 161507705 6821.0 - 0 ENSG00000226121.2 processed_pseudogene AHCTF1P1 1 OTTHUMG00000153889.1 pseudo_consens +38012 chr2 ENSEMBL gene 161558544 161558646 103.0 + 0 ENSG00000238570.1 snoRNA RF01210 3 +38013 chr2 HAVANA gene 161568502 161570185 1684.0 - 0 ENSG00000226946.1 processed_pseudogene AC062022.1 1 OTTHUMG00000153860.3 pseudo_consens +38014 chr2 HAVANA gene 161580072 161581350 1279.0 + 0 ENSG00000235716.1 processed_pseudogene KRT18P46 1 OTTHUMG00000154324.1 pseudo_consens,overlapping_locus +38015 chr2 HAVANA gene 161931199 161931466 268.0 - 0 ENSG00000234732.1 processed_pseudogene RPEP5 1 OTTHUMG00000153862.1 pseudo_consens +38016 chr2 HAVANA gene 161424332 161985282 7550.0 + 0 ENSG00000144290.16 protein_coding SLC4A10 2 OTTHUMG00000153938.5 ncRNA_host,overlapping_locus +38017 chr2 HAVANA gene 161992241 162074542 5009.0 - 0 ENSG00000197635.9 protein_coding DPP4 2 OTTHUMG00000132056.13 +38018 chr2 HAVANA gene 162073256 162075169 640.0 + 0 ENSG00000230918.1 antisense AC008063.1 2 OTTHUMG00000153863.1 +38019 chr2 HAVANA gene 162077357 162077651 295.0 - 0 ENSG00000231445.1 processed_pseudogene TIMM8AP1 1 OTTHUMG00000154346.1 pseudo_consens +38020 chr2 HAVANA gene 162088259 162090072 1814.0 + 0 ENSG00000224674.1 processed_pseudogene EIF3EP2 1 OTTHUMG00000154397.1 pseudo_consens +38021 chr2 HAVANA gene 162092232 162095032 1117.0 + 0 ENSG00000233397.2 lincRNA AC008063.2 1 OTTHUMG00000153861.2 +38022 chr2 HAVANA gene 162142873 162152404 2387.0 - 0 ENSG00000115263.14 protein_coding GCG 2 OTTHUMG00000153892.4 +38023 chr2 HAVANA gene 162159762 162173223 4157.0 + 0 ENSG00000236841.7 antisense AC007750.1 2 OTTHUMG00000153891.4 +38024 chr2 HAVANA gene 162170684 162245151 7003.0 - 0 ENSG00000078098.13 protein_coding FAP 2 OTTHUMG00000153890.8 +38025 chr2 HAVANA gene 162267079 162318703 4528.0 - 0 ENSG00000115267.6 protein_coding IFIH1 2 OTTHUMG00000132055.5 +38026 chr2 HAVANA gene 162318840 162371595 3664.0 + 0 ENSG00000115271.10 protein_coding GCA 1 OTTHUMG00000132057.9 +38027 chr2 ENSEMBL gene 162496936 162497051 116.0 + 0 ENSG00000212312.1 rRNA_pseudogene RNA5SP109 3 +38028 chr2 HAVANA gene 162768936 162797972 2999.0 + 0 ENSG00000237750.2 antisense AC011900.1 1 OTTHUMG00000153947.2 +38029 chr2 HAVANA gene 162371407 162838730 4974.0 - 0 ENSG00000184611.11 protein_coding KCNH7 2 OTTHUMG00000132069.4 +38030 chr2 HAVANA gene 163152251 163153307 751.0 - 0 ENSG00000230282.1 processed_pseudogene RPL7P61 1 OTTHUMG00000153910.1 pseudo_consens +38031 chr2 ENSEMBL gene 163288995 163289096 102.0 + 0 ENSG00000200902.1 snRNA RNU6-627P 3 +38032 chr2 HAVANA gene 163593396 163736012 9942.0 - 0 ENSG00000182263.13 protein_coding FIGN 2 OTTHUMG00000074059.4 +38033 chr2 HAVANA gene 164213539 164214414 876.0 + 0 ENSG00000226847.1 processed_pseudogene PRPS1P1 1 OTTHUMG00000153936.1 pseudo_consens +38034 chr2 HAVANA gene 164321933 164322223 291.0 + 0 ENSG00000229641.1 processed_pseudogene CYP2C56P 2 OTTHUMG00000153935.1 +38035 chr2 HAVANA gene 163749573 164352223 714.0 - 0 ENSG00000237844.1 lincRNA AC016766.1 2 OTTHUMG00000153912.2 +38036 chr2 HAVANA gene 164573741 164574054 314.0 + 0 ENSG00000277998.1 unprocessed_pseudogene AC107075.1 1 OTTHUMG00000187699.1 pseudo_consens +38037 chr2 HAVANA gene 164492812 164621848 2958.0 - 0 ENSG00000115290.9 protein_coding GRB14 1 OTTHUMG00000132135.7 +38038 chr2 HAVANA gene 164687287 164687596 310.0 - 0 ENSG00000224331.2 processed_pseudogene AC019181.1 2 OTTHUMG00000153943.1 overlapping_locus +38039 chr2 ENSEMBL gene 164687643 164687777 135.0 - 0 ENSG00000206869.1 snoRNA SNORA70F 3 +38040 chr2 HAVANA gene 164653624 164843679 17178.0 - 0 ENSG00000082438.15 protein_coding COBLL1 2 OTTHUMG00000074019.9 ncRNA_host,overlapping_locus +38041 chr2 ENSEMBL gene 164858432 164858546 115.0 + 0 ENSG00000199508.1 rRNA_pseudogene RNA5SP110 3 +38042 chr2 ENSEMBL gene 164895677 164895777 101.0 - 0 ENSG00000223318.1 rRNA_pseudogene RNA5SP111 3 +38043 chr2 HAVANA gene 164896186 164955525 5552.0 - 0 ENSG00000169507.9 protein_coding SLC38A11 1 OTTHUMG00000132144.3 +38044 chr2 HAVANA gene 165087522 165204067 9840.0 - 0 ENSG00000153253.16 protein_coding SCN3A 2 OTTHUMG00000044171.7 +38045 chr2 HAVANA gene 164840672 165208261 7393.0 + 0 ENSG00000236283.4 antisense AC019197.1 2 OTTHUMG00000153999.4 +38046 chr2 HAVANA gene 165285253 165286048 796.0 + 0 ENSG00000233204.1 processed_pseudogene MAPRE1P3 1 OTTHUMG00000153998.1 pseudo_consens,overlapping_locus +38047 chr2 HAVANA gene 165194993 165392310 23695.0 + 0 ENSG00000136531.15 protein_coding SCN2A 2 OTTHUMG00000044172.10 overlapping_locus +38048 chr2 HAVANA gene 165469647 165689407 12565.0 + 0 ENSG00000178662.15 protein_coding CSRNP3 1 OTTHUMG00000132145.3 +38049 chr2 HAVANA gene 165747591 165794682 4686.0 - 0 ENSG00000115339.13 protein_coding GALNT3 2 OTTHUMG00000132157.11 +38050 chr2 HAVANA gene 165794851 165810010 779.0 + 0 ENSG00000235192.1 lincRNA AC009495.3 1 OTTHUMG00000154036.1 +38051 chr2 HAVANA gene 165833048 165839098 506.0 - 0 ENSG00000232411.1 lincRNA AC009495.2 1 OTTHUMG00000154037.1 overlapping_locus +38052 chr2 HAVANA gene 165794857 165846091 372.0 - 0 ENSG00000229195.1 lincRNA AC009495.1 2 OTTHUMG00000154038.1 overlapping_locus +38053 chr2 HAVANA gene 165933857 165949891 2558.0 + 0 ENSG00000224490.5 processed_transcript TTC21B-AS1 2 OTTHUMG00000154082.1 +38054 chr2 HAVANA gene 165857475 165953843 7538.0 - 0 ENSG00000123607.14 protein_coding TTC21B 1 OTTHUMG00000154083.1 +38055 chr2 ENSEMBL gene 166123494 166123597 104.0 - 0 ENSG00000238813.1 misc_RNA RF00019 3 +38056 chr2 HAVANA gene 165984641 166149214 16946.0 - 0 ENSG00000144285.19 protein_coding SCN1A 1 OTTHUMG00000044173.18 ncRNA_host +38057 chr2 ENSEMBL gene 166180652 166180966 315.0 - 0 ENSG00000222376.1 misc_RNA RN7SKP152 3 +38058 chr2 HAVANA gene 165957399 166301784 5453.0 + 0 ENSG00000236107.8 antisense AC010127.1 2 OTTHUMG00000154045.7 +38059 chr2 HAVANA gene 166195185 166376001 13741.0 - 0 ENSG00000169432.15 protein_coding SCN9A 2 OTTHUMG00000154044.6 +38060 chr2 HAVANA gene 166414489 166414729 241.0 + 0 ENSG00000283657.1 unprocessed_pseudogene AC074101.1 2 OTTHUMG00000191800.1 +38061 chr2 HAVANA gene 166403573 166494326 9088.0 - 0 ENSG00000136546.14 protein_coding SCN7A 2 OTTHUMG00000154078.5 +38062 chr2 HAVANA gene 166889502 166889884 383.0 - 0 ENSG00000225182.1 processed_pseudogene AC092601.1 2 OTTHUMG00000153956.2 +38063 chr2 HAVANA gene 167123904 167140955 776.0 - 0 ENSG00000254552.1 antisense XIRP2-AS1 1 OTTHUMG00000165270.1 +38064 chr2 HAVANA gene 166888487 167259753 13031.0 + 0 ENSG00000163092.19 protein_coding XIRP2 1 OTTHUMG00000154027.4 +38065 chr2 HAVANA gene 167293171 167558333 462.0 + 0 ENSG00000228222.1 lincRNA AC073050.1 2 OTTHUMG00000154028.1 +38066 chr2 ENSEMBL gene 167631480 167631541 62.0 - 0 ENSG00000238357.1 snRNA RNU7-148P 3 +38067 chr2 HAVANA gene 167713663 167716065 2403.0 - 0 ENSG00000214211.2 processed_pseudogene CTAGE14P 1 OTTHUMG00000154029.1 pseudo_consens +38068 chr2 HAVANA gene 167868948 167874041 5094.0 + 0 ENSG00000172318.5 protein_coding B3GALT1 2 OTTHUMG00000132163.2 +38069 chr2 HAVANA gene 167814774 167941144 922.0 - 0 ENSG00000235335.2 antisense AC016723.1 2 OTTHUMG00000153961.3 +38070 chr2 HAVANA gene 168231921 168232220 300.0 - 0 ENSG00000238259.1 processed_pseudogene AC067940.1 1 OTTHUMG00000155146.1 pseudo_consens,overlapping_locus +38071 chr2 HAVANA gene 167954020 168248141 4247.0 - 0 ENSG00000198648.10 protein_coding STK39 2 OTTHUMG00000133745.7 overlapping_locus +38072 chr2 ENSEMBL gene 168451324 168451606 283.0 + 0 ENSG00000241074.3 misc_RNA RN7SL813P 3 +38073 chr2 ENSEMBL gene 168582943 168583018 76.0 + 0 ENSG00000265694.1 miRNA MIR4774 3 +38074 chr2 ENSEMBL gene 168606390 168606496 107.0 - 0 ENSG00000199348.1 snRNA RNU6-766P 3 +38075 chr2 HAVANA gene 168455862 168775137 7241.0 + 0 ENSG00000172292.14 protein_coding CERS6 2 OTTHUMG00000132183.4 ncRNA_host +38076 chr2 HAVANA gene 168771953 168786961 4301.0 - 0 ENSG00000227617.8 processed_transcript CERS6-AS1 2 OTTHUMG00000153980.6 +38077 chr2 HAVANA gene 168786539 168865514 5248.0 + 0 ENSG00000163072.15 protein_coding NOSTRIN 1 OTTHUMG00000153990.20 +38078 chr2 HAVANA gene 168901240 168910000 3125.0 + 0 ENSG00000152254.10 protein_coding G6PC2 2 OTTHUMG00000132182.5 +38079 chr2 HAVANA gene 168834132 168913371 1841.0 - 0 ENSG00000152253.8 protein_coding SPC25 2 OTTHUMG00000132181.9 +38080 chr2 HAVANA gene 168915498 169031324 7715.0 - 0 ENSG00000073734.9 protein_coding ABCB11 2 OTTHUMG00000154039.5 +38081 chr2 HAVANA gene 169064789 169096167 3750.0 + 0 ENSG00000073737.16 protein_coding DHRS9 2 OTTHUMG00000132180.9 +38082 chr2 HAVANA gene 169100743 169101210 307.0 + 0 ENSG00000235321.1 antisense AC007556.1 2 OTTHUMG00000155318.1 +38083 chr2 HAVANA gene 169115195 169115680 422.0 + 0 ENSG00000235995.1 processed_pseudogene UBE2V1P6 1 OTTHUMG00000153958.2 pseudo_consens +38084 chr2 HAVANA gene 169127109 169362685 16260.0 - 0 ENSG00000081479.13 protein_coding LRP2 1 OTTHUMG00000132179.5 +38085 chr2 HAVANA gene 169479178 169506655 4556.0 + 0 ENSG00000163093.11 protein_coding BBS5 2 OTTHUMG00000132207.2 overlapping_locus +38086 chr2 HAVANA gene 169479480 169525922 1935.0 + 0 ENSG00000251569.1 protein_coding AC093899.2 2 OTTHUMG00000162280.1 overlapping_locus +38087 chr2 HAVANA gene 169509702 169526262 2620.0 + 0 ENSG00000239474.6 protein_coding KLHL41 2 OTTHUMG00000132205.2 overlapping_locus +38088 chr2 HAVANA gene 169529749 169573875 4451.0 - 0 ENSG00000138399.17 protein_coding FASTKD1 1 OTTHUMG00000154953.3 +38089 chr2 HAVANA gene 169577371 169577746 376.0 - 0 ENSG00000229827.1 processed_pseudogene AC093899.1 1 OTTHUMG00000154952.1 pseudo_consens +38090 chr2 HAVANA gene 169584340 169641406 7368.0 + 0 ENSG00000138398.15 protein_coding PPIG 1 OTTHUMG00000132206.5 +38091 chr2 HAVANA gene 169658132 169661357 1261.0 - 0 ENSG00000226072.1 processed_pseudogene AC016772.1 1 OTTHUMG00000154118.1 pseudo_consens,overlapping_locus +38092 chr2 HAVANA gene 169645425 169694433 2236.0 - 0 ENSG00000154479.12 protein_coding CCDC173 2 OTTHUMG00000154116.3 overlapping_locus +38093 chr2 HAVANA gene 169694454 169701708 1488.0 + 0 ENSG00000144362.11 protein_coding PHOSPHO2 2 OTTHUMG00000153981.4 overlapping_locus +38094 chr2 ENSEMBL gene 169727872 169728003 132.0 + 0 ENSG00000206961.1 snoRNA RF00432 3 +38095 chr2 HAVANA gene 169767185 169768799 1205.0 - 0 ENSG00000231550.1 processed_pseudogene PTCHD3P2 2 OTTHUMG00000154119.1 +38096 chr2 HAVANA gene 169694488 169776989 5509.0 + 0 ENSG00000213160.9 protein_coding KLHL23 2 OTTHUMG00000132213.8 ncRNA_host,overlapping_locus +38097 chr2 HAVANA gene 169790093 169790885 793.0 + 0 ENSG00000214369.2 processed_pseudogene AC009967.1 1 OTTHUMG00000153985.1 pseudo_consens +38098 chr2 HAVANA gene 169791933 169812064 5113.0 + 0 ENSG00000138385.15 protein_coding SSB 1 OTTHUMG00000132212.10 +38099 chr2 HAVANA gene 169810081 169824931 2865.0 - 0 ENSG00000138382.14 protein_coding METTL5 1 OTTHUMG00000154117.3 +38100 chr2 HAVANA gene 170077224 170078294 772.0 - 0 ENSG00000227176.1 processed_pseudogene AC092641.1 1 OTTHUMG00000154115.2 pseudo_consens +38101 chr2 HAVANA gene 169827458 170084131 10063.0 + 0 ENSG00000144357.16 protein_coding UBR3 2 OTTHUMG00000132229.3 +38102 chr2 ENSEMBL gene 170119996 170120098 103.0 - 0 ENSG00000252807.1 snRNA RNU6-1006P 3 +38103 chr2 HAVANA gene 170332085 170408564 5251.0 - 0 ENSG00000231898.8 antisense AC012594.1 1 OTTHUMG00000154003.9 +38104 chr2 HAVANA gene 170601662 170602228 567.0 - 0 ENSG00000214821.4 processed_pseudogene HMGB1P4 1 OTTHUMG00000154005.1 pseudo_consens +38105 chr2 HAVANA gene 170178145 170655171 8236.0 + 0 ENSG00000071909.18 protein_coding MYO3B 2 OTTHUMG00000154002.7 +38106 chr2 ENSEMBL gene 170690564 170690742 179.0 + 0 ENSG00000275414.1 misc_RNA RF02271 3 +38107 chr2 HAVANA gene 170640374 170695374 2189.0 - 0 ENSG00000213981.8 antisense AC007277.1 2 OTTHUMG00000154056.2 +38108 chr2 HAVANA gene 170712451 170714567 2117.0 - 0 ENSG00000222033.1 lincRNA LINC01124 2 OTTHUMG00000154054.1 +38109 chr2 HAVANA gene 170715351 170718078 2060.0 + 0 ENSG00000204335.3 protein_coding SP5 2 OTTHUMG00000154053.1 +38110 chr2 HAVANA gene 170751805 170752788 984.0 + 0 ENSG00000128692.8 processed_pseudogene EIF2S2P4 2 OTTHUMG00000154071.1 +38111 chr2 HAVANA gene 170723086 170770768 3498.0 - 0 ENSG00000234350.4 lincRNA AC007405.1 2 OTTHUMG00000154055.2 +38112 chr2 HAVANA gene 170771113 170778148 967.0 + 0 ENSG00000239467.5 lincRNA AC007405.3 1 OTTHUMG00000154075.1 +38113 chr2 ENSEMBL gene 170783167 170783271 105.0 + 0 ENSG00000222509.1 misc_RNA RF00019 3 +38114 chr2 HAVANA gene 170783786 170798971 601.0 + 0 ENSG00000204334.7 protein_coding ERICH2 1 OTTHUMG00000154074.1 +38115 chr2 HAVANA gene 170816293 170818037 832.0 - 0 ENSG00000235934.1 antisense AC007405.2 1 OTTHUMG00000154073.1 +38116 chr2 HAVANA gene 170813213 170861151 8242.0 + 0 ENSG00000128683.13 protein_coding GAD1 2 OTTHUMG00000044175.8 +38117 chr2 HAVANA gene 170928464 170967129 5340.0 + 0 ENSG00000115806.12 protein_coding GORASP2 2 OTTHUMG00000154072.2 +38118 chr2 HAVANA gene 170990823 171231314 9405.0 - 0 ENSG00000198586.13 protein_coding TLK1 2 OTTHUMG00000132243.6 +38119 chr2 HAVANA gene 171374931 171375278 348.0 - 0 ENSG00000224553.1 processed_pseudogene AC008065.1 1 OTTHUMG00000151624.1 pseudo_consens,overlapping_locus +38120 chr2 HAVANA gene 171317405 171434802 10074.0 - 0 ENSG00000123600.19 protein_coding METTL8 1 OTTHUMG00000132261.6 overlapping_locus +38121 chr2 HAVANA gene 171434217 171485052 7657.0 + 0 ENSG00000115827.13 protein_coding DCAF17 2 OTTHUMG00000132259.2 +38122 chr2 HAVANA gene 171491422 171491931 510.0 + 0 ENSG00000228507.1 processed_pseudogene DAP3P2 1 OTTHUMG00000154084.1 pseudo_consens +38123 chr2 HAVANA gene 171492905 171493095 191.0 + 0 ENSG00000234061.1 processed_pseudogene AC007969.2 1 OTTHUMG00000154085.1 pseudo_consens +38124 chr2 HAVANA gene 171517270 171517716 447.0 - 0 ENSG00000233762.3 processed_pseudogene AC007969.1 2 OTTHUMG00000154086.1 +38125 chr2 HAVANA gene 171522247 171558133 5176.0 + 0 ENSG00000071967.11 protein_coding CYBRD1 1 OTTHUMG00000132260.3 +38126 chr2 HAVANA gene 171587093 171587259 167.0 + 0 ENSG00000233934.2 processed_pseudogene RPL21P38 1 OTTHUMG00000154060.3 pseudo_consens +38127 chr2 HAVANA gene 171687409 171748420 4695.0 + 0 ENSG00000077380.15 protein_coding DYNC1I2 1 OTTHUMG00000154061.12 +38128 chr2 ENSEMBL gene 171856566 171856670 105.0 - 0 ENSG00000252779.1 snRNA RNU6-182P 3 +38129 chr2 HAVANA gene 171922448 171983682 6790.0 + 0 ENSG00000128708.12 protein_coding HAT1 2 OTTHUMG00000132282.5 +38130 chr2 HAVANA gene 171784370 171999859 5169.0 - 0 ENSG00000115840.13 protein_coding SLC25A12 2 OTTHUMG00000134290.3 ncRNA_host +38131 chr2 HAVANA gene 171999583 172082430 4850.0 + 0 ENSG00000172878.13 protein_coding METAP1D 2 OTTHUMG00000132283.3 +38132 chr2 HAVANA gene 172084740 172089677 3656.0 + 0 ENSG00000144355.14 protein_coding DLX1 1 OTTHUMG00000073951.4 +38133 chr2 HAVANA gene 172099439 172102900 2970.0 - 0 ENSG00000115844.10 protein_coding DLX2 2 OTTHUMG00000132276.3 +38134 chr2 HAVANA gene 172103006 172109982 950.0 + 0 ENSG00000236651.1 lincRNA DLX2-DT 2 OTTHUMG00000154065.2 +38135 chr2 HAVANA gene 172315287 172323737 510.0 + 0 ENSG00000232555.1 lincRNA AC104088.1 2 OTTHUMG00000154230.1 +38136 chr2 HAVANA gene 172423807 172424173 367.0 - 0 ENSG00000278924.1 TEC AC078883.3 2 OTTHUMG00000176256.1 +38137 chr2 HAVANA gene 172427774 172428603 558.0 - 0 ENSG00000226963.1 antisense AC078883.2 1 OTTHUMG00000154231.1 +38138 chr2 HAVANA gene 172464262 172466022 1077.0 - 0 ENSG00000232788.1 antisense ITGA6-AS1 1 OTTHUMG00000154089.1 +38139 chr2 HAVANA gene 172427354 172506282 6533.0 + 0 ENSG00000091409.14 protein_coding ITGA6 2 OTTHUMG00000132277.5 +38140 chr2 HAVANA gene 172480840 172556596 2447.0 - 0 ENSG00000225205.5 antisense AC078883.1 1 OTTHUMG00000154088.3 +38141 chr2 ENSEMBL gene 172558151 172558252 102.0 - 0 ENSG00000199866.1 misc_RNA RF00019 3 +38142 chr2 HAVANA gene 172555373 172608669 14883.0 + 0 ENSG00000152256.13 protein_coding PDK1 1 OTTHUMG00000132285.7 +38143 chr2 HAVANA gene 172674212 172674898 687.0 - 0 ENSG00000230104.1 processed_pseudogene AC018712.1 1 OTTHUMG00000154093.1 pseudo_consens +38144 chr2 ENSEMBL gene 172691299 172691402 104.0 + 0 ENSG00000239041.1 snoRNA RF01210 3 +38145 chr2 HAVANA gene 172677141 172736206 5217.0 - 0 ENSG00000228016.1 antisense RAPGEF4-AS1 1 OTTHUMG00000154091.1 +38146 chr2 HAVANA gene 172893763 172894383 621.0 - 0 ENSG00000232292.1 processed_pseudogene ALDH7A1P2 1 OTTHUMG00000154092.1 pseudo_consens +38147 chr2 HAVANA gene 172735274 173052893 7129.0 + 0 ENSG00000091428.17 protein_coding RAPGEF4 2 OTTHUMG00000133677.4 +38148 chr2 HAVANA gene 173075435 173268010 13799.0 + 0 ENSG00000091436.16 protein_coding MAP3K20 2 OTTHUMG00000132297.7 +38149 chr2 HAVANA gene 173166446 173282036 3049.0 - 0 ENSG00000238133.6 antisense MAP3K20-AS1 2 OTTHUMG00000154109.2 +38150 chr2 HAVANA gene 173297629 173298512 884.0 + 0 ENSG00000231735.1 processed_pseudogene AC092573.1 2 OTTHUMG00000157078.1 +38151 chr2 HAVANA gene 173338219 173356208 457.0 - 0 ENSG00000236391.3 transcribed_processed_pseudogene AC092573.2 1 OTTHUMG00000154106.2 pseudo_consens +38152 chr2 HAVANA gene 173354820 173368997 3934.0 + 0 ENSG00000144354.13 protein_coding CDCA7 2 OTTHUMG00000132296.2 +38153 chr2 HAVANA gene 173431349 173431812 464.0 - 0 ENSG00000213148.3 processed_pseudogene AC073465.1 1 OTTHUMG00000154105.1 pseudo_consens +38154 chr2 HAVANA gene 173477996 173478400 405.0 - 0 ENSG00000236832.1 processed_pseudogene AC073465.2 1 OTTHUMG00000154107.1 pseudo_consens +38155 chr2 HAVANA gene 173485865 173486362 498.0 - 0 ENSG00000226131.1 processed_pseudogene PPIAP66 1 OTTHUMG00000154128.1 pseudo_consens +38156 chr2 HAVANA gene 173575110 173576341 1232.0 - 0 ENSG00000237016.1 processed_pseudogene AC013410.1 1 OTTHUMG00000154130.1 pseudo_consens +38157 chr2 HAVANA gene 173705948 173706148 201.0 - 0 ENSG00000237617.1 processed_pseudogene AC013410.2 2 OTTHUMG00000154131.1 +38158 chr2 HAVANA gene 173811076 173811392 317.0 + 0 ENSG00000270460.1 lincRNA AC106900.2 2 OTTHUMG00000185116.1 +38159 chr2 HAVANA gene 173871653 173872465 813.0 - 0 ENSG00000234415.1 processed_pseudogene RPL5P7 1 OTTHUMG00000154133.1 pseudo_consens +38160 chr2 HAVANA gene 173880865 173899428 456.0 - 0 ENSG00000224638.1 lincRNA AC106900.1 1 OTTHUMG00000154132.1 +38161 chr2 HAVANA gene 173906459 173965702 10704.0 - 0 ENSG00000172845.14 protein_coding SP3 2 OTTHUMG00000132333.3 +38162 chr2 HAVANA gene 173968351 173969418 1068.0 + 0 ENSG00000271151.1 lincRNA AC016737.1 2 OTTHUMG00000185087.1 +38163 chr2 HAVANA gene 174011856 174012975 358.0 - 0 ENSG00000273258.1 lincRNA AC016737.2 2 OTTHUMG00000186065.1 +38164 chr2 HAVANA gene 174025280 174027163 1884.0 + 0 ENSG00000260868.1 lincRNA LINC01960 2 OTTHUMG00000176260.1 +38165 chr2 HAVANA gene 174043008 174043880 873.0 + 0 ENSG00000235414.3 processed_pseudogene RPSAP24 1 OTTHUMG00000154134.1 pseudo_consens +38166 chr2 HAVANA gene 174171891 174172725 835.0 + 0 ENSG00000270799.1 processed_pseudogene AC013467.2 1 OTTHUMG00000184260.1 pseudo_consens +38167 chr2 ENSEMBL gene 174240143 174240457 315.0 - 0 ENSG00000243770.3 misc_RNA RN7SL65P 3 +38168 chr2 HAVANA gene 174072447 174248698 6100.0 - 0 ENSG00000138430.15 protein_coding OLA1 1 OTTHUMG00000132335.4 ncRNA_host +38169 chr2 ENSEMBL gene 174264878 174264981 104.0 - 0 ENSG00000201088.1 misc_RNA RF00019 3 +38170 chr2 HAVANA gene 174299324 174300956 1041.0 - 0 ENSG00000227180.1 processed_pseudogene AC013467.1 1 OTTHUMG00000154147.1 pseudo_consens +38171 chr2 HAVANA gene 174310015 174310974 960.0 - 0 ENSG00000237804.1 processed_pseudogene HNRNPA1P39 1 OTTHUMG00000154151.1 pseudo_consens +38172 chr2 HAVANA gene 174326027 174330643 3435.0 + 0 ENSG00000231453.1 lincRNA LINC01305 2 OTTHUMG00000154148.1 +38173 chr2 HAVANA gene 174334438 174337566 3129.0 - 0 ENSG00000280414.1 TEC AC018470.1 2 OTTHUMG00000187125.1 +38174 chr2 HAVANA gene 174334946 174338492 2554.0 + 0 ENSG00000217236.1 protein_coding SP9 1 OTTHUMG00000150371.1 +38175 chr2 HAVANA gene 174348022 174395715 3181.0 - 0 ENSG00000138433.15 protein_coding CIR1 1 OTTHUMG00000132338.3 +38176 chr2 HAVANA gene 174395730 174429575 4144.0 + 0 ENSG00000144306.14 protein_coding SCRN3 1 OTTHUMG00000132332.11 +38177 chr2 HAVANA gene 174431571 174487094 7769.0 - 0 ENSG00000163328.13 protein_coding GPR155 2 OTTHUMG00000132336.2 +38178 chr2 HAVANA gene 174487389 174488386 791.0 + 0 ENSG00000226853.2 lincRNA AC010894.2 1 OTTHUMG00000154152.2 +38179 chr2 HAVANA gene 174501952 174502312 361.0 + 0 ENSG00000179997.8 processed_pseudogene AC010894.1 1 OTTHUMG00000154153.1 pseudo_consens +38180 chr2 HAVANA gene 174545385 174546335 951.0 - 0 ENSG00000279884.1 TEC AC010894.5 2 OTTHUMG00000176283.1 +38181 chr2 ENSEMBL gene 174557966 174558072 107.0 - 0 ENSG00000206965.1 snRNA RNU6-5P 3 +38182 chr2 HAVANA gene 174575227 174587726 457.0 + 0 ENSG00000237798.1 antisense AC010894.4 2 OTTHUMG00000154149.1 overlapping_locus +38183 chr2 HAVANA gene 174559572 174682916 9121.0 - 0 ENSG00000115935.17 protein_coding WIPF1 1 OTTHUMG00000132334.5 +38184 chr2 HAVANA gene 174719908 174720318 411.0 + 0 ENSG00000235655.3 processed_pseudogene H3F3AP4 2 OTTHUMG00000154155.1 overlapping_locus +38185 chr2 HAVANA gene 174547141 174774827 3701.0 + 0 ENSG00000236449.1 antisense AC010894.3 2 OTTHUMG00000154592.2 overlapping_locus +38186 chr2 HAVANA gene 174747592 174787935 4855.0 - 0 ENSG00000138435.15 protein_coding CHRNA1 1 OTTHUMG00000132357.3 +38187 chr2 HAVANA gene 174799363 175005369 4971.0 - 0 ENSG00000128656.13 protein_coding CHN1 2 OTTHUMG00000154225.6 +38188 chr2 ENSEMBL gene 175022214 175022319 106.0 + 0 ENSG00000212167.1 snRNA RNU6-763P 3 +38189 chr2 ENSEMBL gene 175029769 175029877 109.0 + 0 ENSG00000199827.1 snRNA RNU6-1290P 3 +38190 chr2 HAVANA gene 175033778 175034192 415.0 - 0 ENSG00000227187.1 processed_pseudogene AC007435.1 1 OTTHUMG00000157079.1 pseudo_consens +38191 chr2 ENSEMBL gene 175092401 175092587 187.0 - 0 ENSG00000277948.1 misc_RNA RF02271 3 +38192 chr2 ENSEMBL gene 175167633 175167709 77.0 - 0 ENSG00000215973.1 miRNA MIR933 3 +38193 chr2 HAVANA gene 175072250 175168382 5751.0 - 0 ENSG00000115966.16 protein_coding ATF2 1 OTTHUMG00000132424.7 ncRNA_host +38194 chr2 HAVANA gene 175167904 175168522 497.0 + 0 ENSG00000229750.1 antisense AC096649.1 1 OTTHUMG00000154227.1 +38195 chr2 ENSEMBL gene 175176493 175176586 94.0 - 0 ENSG00000200121.2 misc_RNA RF00019 3 +38196 chr2 HAVANA gene 175184215 175184607 393.0 + 0 ENSG00000233131.1 processed_pseudogene AC096649.2 2 OTTHUMG00000154226.1 +38197 chr2 HAVANA gene 175176258 175184607 6780.0 - 0 ENSG00000154518.9 protein_coding ATP5MC3 2 OTTHUMG00000132425.2 ncRNA_host +38198 chr2 HAVANA gene 175257250 175454640 1002.0 + 0 ENSG00000229066.1 lincRNA AC093459.1 2 OTTHUMG00000154232.1 +38199 chr2 HAVANA gene 175842887 175843302 416.0 + 0 ENSG00000223976.1 processed_pseudogene EXTL2P1 2 OTTHUMG00000154110.1 +38200 chr2 HAVANA gene 175897336 175904232 280.0 + 0 ENSG00000235047.1 antisense AC016751.2 2 OTTHUMG00000154113.1 +38201 chr2 HAVANA gene 175904371 175905502 306.0 - 0 ENSG00000229779.1 lincRNA AC016751.1 2 OTTHUMG00000154111.1 +38202 chr2 HAVANA gene 175923892 176002839 9122.0 - 0 ENSG00000144320.13 protein_coding LNPK 2 OTTHUMG00000154112.6 +38203 chr2 HAVANA gene 176077472 176083913 4203.0 - 0 ENSG00000174279.4 protein_coding EVX2 2 OTTHUMG00000154173.2 +38204 chr2 HAVANA gene 176092891 176095938 2240.0 + 0 ENSG00000128714.5 protein_coding HOXD13 1 OTTHUMG00000132431.5 +38205 chr2 HAVANA gene 176099730 176101193 1346.0 + 0 ENSG00000170178.6 protein_coding HOXD12 2 OTTHUMG00000150358.4 +38206 chr2 HAVANA gene 176104216 176109754 2110.0 + 0 ENSG00000128713.13 protein_coding HOXD11 1 OTTHUMG00000132510.5 overlapping_locus +38207 chr2 HAVANA gene 176108790 176119942 2692.0 + 0 ENSG00000128710.5 protein_coding HOXD10 1 OTTHUMG00000132511.4 overlapping_locus +38208 chr2 HAVANA gene 176122720 176124937 1870.0 + 0 ENSG00000128709.12 protein_coding HOXD9 2 OTTHUMG00000132516.5 +38209 chr2 HAVANA gene 176129694 176132695 2629.0 + 0 ENSG00000175879.8 protein_coding HOXD8 1 OTTHUMG00000132513.5 +38210 chr2 HAVANA gene 176121611 176137098 1429.0 - 0 ENSG00000237380.6 antisense HOXD-AS2 2 OTTHUMG00000154174.4 +38211 chr2 ENSEMBL gene 176150303 176150412 110.0 + 0 ENSG00000207744.1 miRNA MIR10B 3 +38212 chr2 HAVANA gene 176151222 176153226 1464.0 + 0 ENSG00000170166.5 protein_coding HOXD4 2 OTTHUMG00000132515.4 overlapping_locus +38213 chr2 HAVANA gene 176164164 176165716 1553.0 - 0 ENSG00000272729.1 antisense AC009336.1 2 OTTHUMG00000186066.1 +38214 chr2 HAVANA gene 176151085 176173097 3521.0 + 0 ENSG00000278500.1 protein_coding AC009336.2 2 OTTHUMG00000132517.9 overlapping_locus +38215 chr2 HAVANA gene 176136612 176173102 3548.0 + 0 ENSG00000128652.11 protein_coding HOXD3 2 OTTHUMG00000187566.2 ncRNA_host,overlapping_locus +38216 chr2 HAVANA gene 176177717 176179008 1121.0 + 0 ENSG00000226363.3 lincRNA HAGLROS 1 OTTHUMG00000154176.3 +38217 chr2 ENSEMBL gene 176188843 176188901 59.0 + 0 ENSG00000283880.1 miRNA MIR7704 3 +38218 chr2 HAVANA gene 176164051 176188958 5110.0 - 0 ENSG00000224189.7 antisense HAGLR 1 OTTHUMG00000154172.4 +38219 chr2 HAVANA gene 176188579 176190907 1975.0 + 0 ENSG00000128645.14 protein_coding HOXD1 2 OTTHUMG00000132512.5 ncRNA_host +38220 chr2 HAVANA gene 176189919 176192538 2620.0 - 0 ENSG00000279160.1 TEC AC009336.3 2 OTTHUMG00000187567.1 +38221 chr2 HAVANA gene 176200908 176201252 345.0 - 0 ENSG00000218175.2 processed_pseudogene AC016739.1 2 OTTHUMG00000155366.1 +38222 chr2 HAVANA gene 176242111 176242993 883.0 + 0 ENSG00000230384.1 processed_pseudogene RPSAP25 1 OTTHUMG00000154406.1 pseudo_consens +38223 chr2 HAVANA gene 176269395 176338025 1717.0 + 0 ENSG00000128654.13 protein_coding MTX2 2 OTTHUMG00000132514.8 +38224 chr2 HAVANA gene 176338637 176339077 441.0 + 0 ENSG00000237260.1 processed_pseudogene PPIAP67 1 OTTHUMG00000154405.2 pseudo_consens +38225 chr2 HAVANA gene 176506245 176507702 495.0 - 0 ENSG00000229434.1 lincRNA AC017048.1 1 OTTHUMG00000154142.1 +38226 chr2 HAVANA gene 176524879 176531683 822.0 - 0 ENSG00000236231.1 lincRNA AC017048.2 2 OTTHUMG00000154158.1 +38227 chr2 ENSEMBL gene 176600980 176601052 73.0 - 0 ENSG00000283203.1 miRNA MIR1246 3 +38228 chr2 HAVANA gene 176611437 176612249 813.0 - 0 ENSG00000272551.1 lincRNA AC017048.3 2 OTTHUMG00000186067.1 +38229 chr2 HAVANA gene 176629589 176637931 1783.0 - 0 ENSG00000163364.9 lincRNA LINC01116 1 OTTHUMG00000154156.3 +38230 chr2 HAVANA gene 176637710 176655958 699.0 + 0 ENSG00000224577.1 lincRNA LINC01117 1 OTTHUMG00000154157.2 +38231 chr2 ENSEMBL gene 176664676 176664766 91.0 + 0 ENSG00000252027.1 snRNA RNU6ATAC14P 3 +38232 chr2 HAVANA gene 176804987 176806337 1351.0 - 0 ENSG00000237053.1 processed_pseudogene FUCA1P1 1 OTTHUMG00000154420.2 pseudo_consens,overlapping_locus +38233 chr2 HAVANA gene 176809426 176809859 434.0 - 0 ENSG00000223777.1 processed_pseudogene AC092162.1 1 OTTHUMG00000154421.2 pseudo_consens,overlapping_locus +38234 chr2 HAVANA gene 176724268 176819310 5290.0 - 0 ENSG00000230552.5 lincRNA AC092162.2 1 OTTHUMG00000154103.2 overlapping_locus +38235 chr2 HAVANA gene 176822030 176823653 1624.0 + 0 ENSG00000279205.1 TEC AC092162.3 2 OTTHUMG00000176289.1 +38236 chr2 HAVANA gene 176845993 176849428 646.0 - 0 ENSG00000227098.1 lincRNA AC073636.1 1 OTTHUMG00000154100.2 +38237 chr2 ENSEMBL gene 176929985 176930090 106.0 - 0 ENSG00000206866.1 snRNA RNU6-187P 3 +38238 chr2 ENSEMBL gene 177138699 177138797 99.0 + 0 ENSG00000251746.1 rRNA_pseudogene RNA5SP112 3 +38239 chr2 HAVANA gene 176990508 177164516 946.0 - 0 ENSG00000236501.5 lincRNA AC074286.1 2 OTTHUMG00000155365.1 overlapping_locus +38240 chr2 HAVANA gene 177177695 177178255 561.0 + 0 ENSG00000226273.2 processed_pseudogene AC079305.2 1 OTTHUMG00000154098.2 pseudo_consens +38241 chr2 ENSEMBL gene 177194983 177195095 113.0 + 0 ENSG00000201102.1 misc_RNA RF00019 3 +38242 chr2 HAVANA gene 177197985 177198547 563.0 + 0 ENSG00000213069.3 processed_pseudogene KRT8P40 1 OTTHUMG00000154099.3 pseudo_consens +38243 chr2 HAVANA gene 177155622 177212662 218.0 - 0 ENSG00000229337.1 antisense AC079305.3 2 OTTHUMG00000154102.1 overlapping_locus +38244 chr2 ENSEMBL gene 177212726 177212799 74.0 + 0 ENSG00000284252.1 miRNA MIR4444-1 3 +38245 chr2 HAVANA gene 177212563 177223958 6033.0 + 0 ENSG00000170144.20 protein_coding HNRNPA3 2 OTTHUMG00000132529.11 ncRNA_host +38246 chr2 HAVANA gene 177229191 177229506 316.0 - 0 ENSG00000225808.1 processed_pseudogene DNAJC19P5 1 OTTHUMG00000154139.1 pseudo_consens,overlapping_locus +38247 chr2 ENSEMBL gene 177255945 177256010 66.0 - 0 ENSG00000265396.1 miRNA MIR3128 3 +38248 chr2 HAVANA gene 177264359 177265515 499.0 + 0 ENSG00000222043.2 antisense AC079305.1 1 OTTHUMG00000154178.1 +38249 chr2 HAVANA gene 177300600 177302006 444.0 + 0 ENSG00000271825.1 antisense AC019080.3 2 OTTHUMG00000185612.1 +38250 chr2 HAVANA gene 177306373 177310572 564.0 + 0 ENSG00000271996.1 antisense AC019080.4 2 OTTHUMG00000185613.1 +38251 chr2 ENSEMBL gene 177313806 177313882 77.0 - 0 ENSG00000278418.1 miRNA MIR6512 3 +38252 chr2 HAVANA gene 177317715 177318471 757.0 - 0 ENSG00000280374.1 sense_intronic AC019080.5 2 OTTHUMG00000189260.1 +38253 chr2 HAVANA gene 177344443 177344836 394.0 + 0 ENSG00000237178.2 processed_pseudogene AC019080.2 1 OTTHUMG00000154138.2 pseudo_consens +38254 chr2 ENSEMBL gene 177345858 177345961 104.0 - 0 ENSG00000238295.1 snoRNA RF01210 3 +38255 chr2 HAVANA gene 177283508 177392691 7171.0 - 0 ENSG00000213963.6 sense_overlapping AC019080.1 2 OTTHUMG00000132531.14 ncRNA_host,overlapping_locus +38256 chr2 HAVANA gene 177227595 177392697 5979.0 - 0 ENSG00000116044.15 protein_coding NFE2L2 1 OTTHUMG00000133620.17 ncRNA_host,overlapping_locus +38257 chr2 HAVANA gene 177548998 177553014 4017.0 - 0 ENSG00000196659.9 protein_coding TTC30B 2 OTTHUMG00000154166.2 +38258 chr2 HAVANA gene 177392644 177559299 8745.0 + 0 ENSG00000018510.14 protein_coding AGPS 2 OTTHUMG00000132530.4 +38259 chr2 HAVANA gene 177603089 177618572 590.0 + 0 ENSG00000237655.1 antisense AC073834.1 1 OTTHUMG00000154167.1 +38260 chr2 HAVANA gene 177612992 177618966 5975.0 - 0 ENSG00000197557.6 protein_coding TTC30A 2 OTTHUMG00000132528.2 +38261 chr2 HAVANA gene 177698429 177723289 741.0 + 0 ENSG00000229941.5 antisense AC012499.1 1 OTTHUMG00000154189.2 +38262 chr2 HAVANA gene 177997273 177998770 1498.0 - 0 ENSG00000213962.2 processed_pseudogene API5P2 1 OTTHUMG00000154194.1 pseudo_consens,overlapping_locus +38263 chr2 HAVANA gene 177953111 178011989 254.0 - 0 ENSG00000236664.1 sense_intronic AC011998.3 2 OTTHUMG00000154195.1 overlapping_locus +38264 chr2 HAVANA gene 178017993 178018465 473.0 + 0 ENSG00000229744.1 processed_pseudogene AC011998.2 1 OTTHUMG00000154196.1 pseudo_consens +38265 chr2 ENSEMBL gene 178038902 178039004 103.0 + 0 ENSG00000206788.1 snRNA RNU6-629P 3 +38266 chr2 HAVANA gene 177623252 178072755 12237.0 - 0 ENSG00000128655.17 protein_coding PDE11A 2 OTTHUMG00000154188.7 overlapping_locus +38267 chr2 HAVANA gene 178092503 178104470 315.0 - 0 ENSG00000249909.1 unitary_pseudogene CYCTP 2 OTTHUMG00000154943.1 overlapping_locus +38268 chr2 HAVANA gene 178105637 178105753 117.0 + 0 ENSG00000227241.1 processed_pseudogene AC011998.1 2 OTTHUMG00000154193.1 +38269 chr2 HAVANA gene 177628069 178108339 3489.0 - 0 ENSG00000284741.1 protein_coding PDE11A 2 OTTHUMG00000192246.1 overlapping_locus +38270 chr2 HAVANA gene 178112424 178139011 4784.0 + 0 ENSG00000155636.14 protein_coding RBM45 2 OTTHUMG00000154202.3 +38271 chr2 ENSEMBL gene 178142548 178142651 104.0 + 0 ENSG00000223096.1 snRNA RNU5E-9P 3 +38272 chr2 HAVANA gene 178194481 178402891 11486.0 + 0 ENSG00000079156.16 protein_coding OSBPL6 2 OTTHUMG00000132579.4 +38273 chr2 HAVANA gene 178413939 178440243 4001.0 + 0 ENSG00000223960.6 antisense AC009948.1 1 OTTHUMG00000154423.2 +38274 chr2 HAVANA gene 178431414 178451512 3941.0 - 0 ENSG00000180228.12 protein_coding PRKRA 2 OTTHUMG00000132576.26 +38275 chr2 HAVANA gene 178454716 178455428 713.0 + 0 ENSG00000238082.1 processed_pseudogene AC009948.2 1 OTTHUMG00000154424.1 pseudo_consens,overlapping_locus +38276 chr2 HAVANA gene 178451346 178461409 3788.0 + 0 ENSG00000204311.13 protein_coding PJVK 1 OTTHUMG00000154425.5 overlapping_locus +38277 chr2 HAVANA gene 178463664 178478600 3080.0 - 0 ENSG00000079150.17 protein_coding FKBP7 2 OTTHUMG00000132577.6 +38278 chr2 HAVANA gene 178480468 178516462 14193.0 + 0 ENSG00000116095.10 protein_coding PLEKHA3 1 OTTHUMG00000154446.2 +38279 chr2 HAVANA gene 178541125 178541799 675.0 + 0 ENSG00000270956.1 antisense AC009948.4 2 OTTHUMG00000185185.1 overlapping_locus +38280 chr2 HAVANA gene 178548884 178550681 1798.0 + 0 ENSG00000270277.1 antisense AC009948.3 2 OTTHUMG00000180305.1 overlapping_locus +38281 chr2 HAVANA gene 178554561 178558966 4406.0 + 0 ENSG00000279598.1 TEC AC009948.5 2 OTTHUMG00000180306.1 overlapping_locus +38282 chr2 HAVANA gene 178577103 178577622 520.0 + 0 ENSG00000271011.1 antisense AC010680.3 2 OTTHUMG00000185186.1 overlapping_locus +38283 chr2 HAVANA gene 178578790 178580906 2117.0 + 0 ENSG00000270574.1 antisense AC010680.2 2 OTTHUMG00000180307.1 overlapping_locus +38284 chr2 HAVANA gene 178616581 178617123 543.0 + 0 ENSG00000271141.1 lincRNA AC010680.4 2 OTTHUMG00000185187.1 overlapping_locus +38285 chr2 HAVANA gene 178644717 178645179 463.0 + 0 ENSG00000271401.1 lincRNA AC010680.5 2 OTTHUMG00000185188.1 overlapping_locus +38286 chr2 HAVANA gene 178723457 178727046 3590.0 + 0 ENSG00000267784.1 antisense AC010680.1 2 OTTHUMG00000180308.1 overlapping_locus +38287 chr2 HAVANA gene 178521183 178779963 20654.0 + 0 ENSG00000237298.9 antisense TTN-AS1 1 OTTHUMG00000133536.10 overlapping_locus +38288 chr2 HAVANA gene 178525989 178830802 118976.0 - 0 ENSG00000155657.26 protein_coding TTN 1 OTTHUMG00000154448.23 overlapping_locus +38289 chr2 ENSEMBL gene 178831371 178831449 79.0 - 0 ENSG00000238542.1 snRNA RNU7-104P 3 +38290 chr2 HAVANA gene 179001756 179002760 705.0 + 0 ENSG00000231541.1 processed_pseudogene RPS6P2 1 OTTHUMG00000154556.2 pseudo_consens +38291 chr2 HAVANA gene 178829757 179050086 15446.0 - 0 ENSG00000163492.15 protein_coding CCDC141 2 OTTHUMG00000132578.9 ncRNA_host,overlapping_locus +38292 chr2 HAVANA gene 179101692 179264790 11349.0 - 0 ENSG00000187231.13 protein_coding SESTD1 2 OTTHUMG00000154554.5 +38293 chr2 HAVANA gene 179273831 179285707 552.0 + 0 ENSG00000237477.1 lincRNA AC093911.1 1 OTTHUMG00000154555.1 +38294 chr2 HAVANA gene 179399728 179400875 1148.0 - 0 ENSG00000237964.3 processed_pseudogene AC068042.1 1 OTTHUMG00000154558.1 pseudo_consens +38295 chr2 HAVANA gene 179814251 179814675 425.0 + 0 ENSG00000213126.2 processed_pseudogene AC092642.1 1 OTTHUMG00000154563.1 pseudo_consens +38296 chr2 ENSEMBL gene 179860836 179860908 73.0 - 0 ENSG00000221240.1 miRNA MIR1258 3 +38297 chr2 HAVANA gene 179441982 179861505 5310.0 - 0 ENSG00000144331.19 protein_coding ZNF385B 2 OTTHUMG00000154559.10 ncRNA_host +38298 chr2 ENSEMBL gene 179934402 179934527 126.0 - 0 ENSG00000202216.2 snoRNA RF00560 3 +38299 chr2 ENSEMBL gene 179934401 179934538 138.0 - 0 ENSG00000280636.1 snoRNA RF00416 3 +38300 chr2 HAVANA gene 179944876 180007113 3324.0 - 0 ENSG00000163510.13 protein_coding CWC22 2 OTTHUMG00000154244.2 +38301 chr2 HAVANA gene 180473137 180473419 283.0 - 0 ENSG00000270289.1 processed_pseudogene AC012669.1 1 OTTHUMG00000184350.1 pseudo_consens +38302 chr2 HAVANA gene 180571712 180692454 562.0 - 0 ENSG00000225258.1 lincRNA AC009478.1 2 OTTHUMG00000154248.1 +38303 chr2 HAVANA gene 180801227 180801533 307.0 + 0 ENSG00000279559.1 TEC AC104820.1 2 OTTHUMG00000176261.1 +38304 chr2 HAVANA gene 180872867 180873414 548.0 - 0 ENSG00000226564.1 processed_pseudogene FTH1P20 1 OTTHUMG00000154191.1 pseudo_consens +38305 chr2 HAVANA gene 180692104 180916939 1436.0 + 0 ENSG00000281131.1 lincRNA SCHLAP1 2 OTTHUMG00000189571.1 +38306 chr2 HAVANA gene 180938830 180939298 469.0 - 0 ENSG00000236667.1 processed_pseudogene AC104076.2 1 OTTHUMG00000154190.1 pseudo_consens +38307 chr2 HAVANA gene 180979427 180980090 265.0 - 0 ENSG00000236153.1 antisense AC104076.1 2 OTTHUMG00000154204.1 +38308 chr2 HAVANA gene 180967248 181076585 2973.0 + 0 ENSG00000170035.15 protein_coding UBE2E3 1 OTTHUMG00000132585.13 +38309 chr2 HAVANA gene 181076051 181105968 833.0 - 0 ENSG00000238171.1 lincRNA AC068196.1 2 OTTHUMG00000154203.1 +38310 chr2 ENSEMBL gene 181305593 181305652 60.0 - 0 ENSG00000266705.1 miRNA MIR4437 3 +38311 chr2 HAVANA gene 181086076 181409321 14668.0 + 0 ENSG00000234663.6 lincRNA LINC01934 2 OTTHUMG00000154205.3 +38312 chr2 HAVANA gene 181422154 181425749 533.0 - 0 ENSG00000226681.1 lincRNA AC020595.1 2 OTTHUMG00000154211.1 +38313 chr2 HAVANA gene 181457202 181536187 7901.0 + 0 ENSG00000115232.13 protein_coding ITGA4 1 OTTHUMG00000154212.3 +38314 chr2 HAVANA gene 181536676 181680665 4765.0 - 0 ENSG00000188452.13 protein_coding CERKL 2 OTTHUMG00000154315.2 overlapping_locus +38315 chr2 HAVANA gene 181673088 181680876 3312.0 - 0 ENSG00000162992.3 protein_coding NEUROD1 2 OTTHUMG00000132583.2 overlapping_locus +38316 chr2 HAVANA gene 181683113 181685707 635.0 + 0 ENSG00000234595.1 antisense AC013733.2 2 OTTHUMG00000154314.1 +38317 chr2 HAVANA gene 181690380 181693415 985.0 - 0 ENSG00000225570.1 lincRNA AC013733.1 1 OTTHUMG00000154316.1 +38318 chr2 HAVANA gene 181694442 181694900 459.0 + 0 ENSG00000223873.1 processed_pseudogene SAP18P2 1 OTTHUMG00000154313.1 pseudo_consens +38319 chr2 ENSEMBL gene 181738606 181738715 110.0 + 0 ENSG00000221023.1 snRNA RNU6ATAC19P 3 +38320 chr2 HAVANA gene 181887851 181891663 3813.0 - 0 ENSG00000260742.1 antisense AC009962.1 2 OTTHUMG00000176262.1 +38321 chr2 HAVANA gene 181891833 181930738 9582.0 + 0 ENSG00000138434.16 protein_coding ITPRID2 1 OTTHUMG00000132584.4 +38322 chr2 HAVANA gene 181961212 181962478 1267.0 - 0 ENSG00000213958.2 processed_pseudogene KRT18P29 1 OTTHUMG00000154327.1 pseudo_consens +38323 chr2 ENSEMBL gene 182048822 182048905 84.0 + 0 ENSG00000222418.1 rRNA_pseudogene RNA5SP113 3 +38324 chr2 HAVANA gene 181954241 182131398 4887.0 + 0 ENSG00000150722.10 protein_coding PPP1R1C 1 OTTHUMG00000154326.4 +38325 chr2 ENSEMBL gene 182314284 182314544 261.0 + 0 ENSG00000242121.3 misc_RNA RN7SL267P 3 +38326 chr2 HAVANA gene 182140036 182523192 6322.0 - 0 ENSG00000115252.18 protein_coding PDE1A 2 OTTHUMG00000132596.2 +38327 chr2 HAVANA gene 182788098 182788435 338.0 + 0 ENSG00000232430.1 processed_pseudogene RPL31P15 2 OTTHUMG00000154210.2 overlapping_locus +38328 chr2 HAVANA gene 182716041 182794464 21835.0 + 0 ENSG00000077232.17 protein_coding DNAJC10 2 OTTHUMG00000154209.5 overlapping_locus +38329 chr2 ENSEMBL gene 182828124 182828221 98.0 + 0 ENSG00000212404.1 misc_RNA RF00019 3 +38330 chr2 HAVANA gene 182833275 182867162 3162.0 - 0 ENSG00000162998.4 protein_coding FRZB 2 OTTHUMG00000132597.1 +38331 chr2 ENSEMBL gene 182873841 182873947 107.0 + 0 ENSG00000207178.1 snRNA RNU6-1122P 3 +38332 chr2 ENSEMBL gene 183022859 183022971 113.0 - 0 ENSG00000202141.1 misc_RNA RF00019 3 +38333 chr2 HAVANA gene 182909115 183038858 22520.0 - 0 ENSG00000061676.14 protein_coding NCKAP1 2 OTTHUMG00000132623.4 ncRNA_host +38334 chr2 ENSEMBL gene 183064235 183064346 112.0 - 0 ENSG00000221498.1 snoRNA RF00599 3 +38335 chr2 HAVANA gene 183071040 183072486 1447.0 - 0 ENSG00000231203.1 processed_pseudogene KRT8P10 1 OTTHUMG00000154237.2 pseudo_consens +38336 chr2 HAVANA gene 183078559 183100005 5376.0 + 0 ENSG00000162999.12 protein_coding DUSP19 2 OTTHUMG00000132622.2 +38337 chr2 HAVANA gene 183083405 183108519 597.0 - 0 ENSG00000224643.5 antisense AC064871.1 2 OTTHUMG00000154238.1 +38338 chr2 HAVANA gene 183117513 183161680 4046.0 + 0 ENSG00000163002.12 protein_coding NUP35 1 OTTHUMG00000132621.7 +38339 chr2 HAVANA gene 183214319 183215400 1082.0 + 0 ENSG00000272800.1 lincRNA AC021851.1 2 OTTHUMG00000186271.2 +38340 chr2 HAVANA gene 183260642 183261046 405.0 + 0 ENSG00000213120.3 processed_pseudogene LIN28AP1 1 OTTHUMG00000154267.1 pseudo_consens +38341 chr2 HAVANA gene 183607442 183608119 678.0 - 0 ENSG00000177855.8 processed_pseudogene CACYBPP2 1 OTTHUMG00000153760.1 pseudo_consens +38342 chr2 HAVANA gene 183904529 183949112 473.0 + 0 ENSG00000234172.1 lincRNA AC093639.1 1 OTTHUMG00000153762.1 +38343 chr2 ENSEMBL gene 184378975 184379044 70.0 + 0 ENSG00000266808.1 miRNA MIR548AE1 3 +38344 chr2 HAVANA gene 184593577 184599008 3465.0 - 0 ENSG00000283839.1 antisense AC096667.1 2 OTTHUMG00000191989.1 +38345 chr2 HAVANA gene 184902111 184902562 452.0 - 0 ENSG00000237824.2 processed_pseudogene RPL23AP33 1 OTTHUMG00000153924.2 pseudo_consens +38346 chr2 HAVANA gene 184598366 184939492 4694.0 + 0 ENSG00000170396.7 protein_coding ZNF804A 2 OTTHUMG00000132625.1 +38347 chr2 HAVANA gene 185547135 185547818 684.0 - 0 ENSG00000225406.1 processed_pseudogene AC080125.1 1 OTTHUMG00000153809.1 pseudo_consens +38348 chr2 ENSEMBL gene 185661774 185661906 133.0 + 0 ENSG00000212581.1 snoRNA RF00096 3 +38349 chr2 HAVANA gene 185719874 185740479 1472.0 - 0 ENSG00000226747.6 antisense AC007966.1 2 OTTHUMG00000154207.2 +38350 chr2 HAVANA gene 185783691 185800151 880.0 - 0 ENSG00000231646.5 antisense FSIP2-AS1 1 OTTHUMG00000155450.1 +38351 chr2 HAVANA gene 185738895 185833290 23494.0 + 0 ENSG00000188738.14 protein_coding FSIP2 2 OTTHUMG00000153874.6 +38352 chr2 HAVANA gene 185956587 185957063 477.0 - 0 ENSG00000224019.1 processed_pseudogene RPL21P32 1 OTTHUMG00000154236.2 pseudo_consens +38353 chr2 HAVANA gene 186032891 186083233 1450.0 - 0 ENSG00000237877.6 lincRNA LINC01473 1 OTTHUMG00000154250.4 +38354 chr2 HAVANA gene 186162949 186163245 297.0 - 0 ENSG00000226410.1 processed_pseudogene AC104058.1 1 OTTHUMG00000154253.1 pseudo_consens +38355 chr2 HAVANA gene 186261419 186261919 501.0 - 0 ENSG00000232568.2 processed_pseudogene RPL23AP35 1 OTTHUMG00000154255.2 pseudo_consens +38356 chr2 HAVANA gene 186354570 186356773 2204.0 - 0 ENSG00000259915.2 lincRNA AC017071.1 2 OTTHUMG00000176270.2 +38357 chr2 HAVANA gene 186364598 186365128 531.0 + 0 ENSG00000227692.1 processed_pseudogene MED28P3 1 OTTHUMG00000154254.1 pseudo_consens +38358 chr2 HAVANA gene 186488624 186489083 460.0 - 0 ENSG00000224323.2 processed_pseudogene DPRXP1 1 OTTHUMG00000154252.2 pseudo_consens +38359 chr2 HAVANA gene 186486156 186509363 3125.0 + 0 ENSG00000065548.17 protein_coding ZC3H15 1 OTTHUMG00000154251.4 +38360 chr2 HAVANA gene 186590065 186680901 8211.0 + 0 ENSG00000138448.11 protein_coding ITGAV 2 OTTHUMG00000132635.5 +38361 chr2 HAVANA gene 186641339 186695287 571.0 - 0 ENSG00000227227.1 antisense AC017101.1 1 OTTHUMG00000155451.1 +38362 chr2 HAVANA gene 186693971 186765965 5826.0 + 0 ENSG00000144369.12 protein_coding FAM171B 2 OTTHUMG00000154278.3 +38363 chr2 HAVANA gene 186827835 186849208 2400.0 - 0 ENSG00000163012.3 protein_coding ZSWIM2 2 OTTHUMG00000154259.1 +38364 chr2 HAVANA gene 187001876 187003377 1502.0 - 0 ENSG00000226553.1 processed_pseudogene AC018735.1 1 OTTHUMG00000154260.1 pseudo_consens +38365 chr2 ENSEMBL gene 187122562 187122861 300.0 - 0 ENSG00000222845.1 misc_RNA RN7SKP42 3 +38366 chr2 ENSEMBL gene 187270698 187270804 107.0 - 0 ENSG00000199626.1 snRNA RNU6-989P 3 +38367 chr2 HAVANA gene 187415552 187415818 267.0 + 0 ENSG00000231739.2 processed_pseudogene GAPDHP59 1 OTTHUMG00000154269.1 pseudo_consens,overlapping_locus +38368 chr2 HAVANA gene 187343129 187448460 6144.0 - 0 ENSG00000064989.12 protein_coding CALCRL 2 OTTHUMG00000132636.5 +38369 chr2 HAVANA gene 187003220 187554663 1472.0 + 0 ENSG00000224063.5 antisense AC007319.1 2 OTTHUMG00000154263.2 overlapping_locus +38370 chr2 HAVANA gene 187464230 187565760 11714.0 - 0 ENSG00000003436.15 protein_coding TFPI 2 OTTHUMG00000132634.7 +38371 chr2 HAVANA gene 187825341 187826449 1109.0 + 0 ENSG00000235616.1 processed_pseudogene ST13P2 1 OTTHUMG00000154284.1 pseudo_consens +38372 chr2 HAVANA gene 188227189 188228382 1194.0 + 0 ENSG00000213115.2 processed_pseudogene AC104131.1 1 OTTHUMG00000154283.1 pseudo_consens +38373 chr2 ENSEMBL gene 188276732 188276844 113.0 - 0 ENSG00000200650.1 rRNA_pseudogene RNA5SP114 3 +38374 chr2 ENSEMBL gene 188297492 188297588 97.0 + 0 ENSG00000207951.1 miRNA MIR561 3 +38375 chr2 HAVANA gene 187712816 188384313 1584.0 - 0 ENSG00000231689.2 lincRNA LINC01090 2 OTTHUMG00000154285.2 +38376 chr2 HAVANA gene 188291669 188595931 11979.0 + 0 ENSG00000144366.15 protein_coding GULP1 1 OTTHUMG00000132647.4 ncRNA_host +38377 chr2 HAVANA gene 188733738 188790104 1454.0 - 0 ENSG00000174325.5 protein_coding DIRC1 2 OTTHUMG00000132646.2 overlapping_locus +38378 chr2 HAVANA gene 188598791 188839445 797.0 - 0 ENSG00000223523.1 sense_overlapping AC092598.1 2 OTTHUMG00000154523.1 overlapping_locus +38379 chr2 ENSEMBL gene 188978093 188978161 69.0 - 0 ENSG00000283238.1 miRNA MIR1245B 3 +38380 chr2 ENSEMBL gene 188978092 188978161 70.0 + 0 ENSG00000221502.1 miRNA MIR1245A 3 +38381 chr2 ENSEMBL gene 188995630 188995692 63.0 + 0 ENSG00000284180.1 miRNA MIR3606 3 +38382 chr2 HAVANA gene 188974320 189012746 6811.0 + 0 ENSG00000168542.14 protein_coding COL3A1 2 OTTHUMG00000132648.6 ncRNA_host +38383 chr2 HAVANA gene 189095063 189096158 397.0 + 0 ENSG00000228073.1 antisense AC133106.1 1 OTTHUMG00000154303.1 +38384 chr2 ENSEMBL gene 189133036 189133111 76.0 - 0 ENSG00000264725.1 miRNA MIR3129 3 +38385 chr2 HAVANA gene 189031896 189225312 7453.0 - 0 ENSG00000204262.12 protein_coding COL5A2 2 OTTHUMG00000149842.4 ncRNA_host +38386 chr2 HAVANA gene 189311263 189311967 705.0 - 0 ENSG00000213601.3 processed_pseudogene KRT18P19 1 OTTHUMG00000154302.1 pseudo_consens +38387 chr2 HAVANA gene 189441433 189475565 5066.0 + 0 ENSG00000115368.9 protein_coding WDR75 2 OTTHUMG00000132660.2 +38388 chr2 HAVANA gene 189486480 189487992 1239.0 - 0 ENSG00000233996.1 processed_pseudogene AC013439.1 1 OTTHUMG00000154321.1 pseudo_consens +38389 chr2 HAVANA gene 189560579 189583758 4330.0 - 0 ENSG00000138449.10 protein_coding SLC40A1 2 OTTHUMG00000132662.4 +38390 chr2 HAVANA gene 189625443 189626259 640.0 - 0 ENSG00000276828.1 unprocessed_pseudogene AC012488.1 2 OTTHUMG00000187702.1 +38391 chr2 HAVANA gene 189661385 189670831 2504.0 + 0 ENSG00000138381.9 protein_coding ASNSD1 2 OTTHUMG00000132665.7 +38392 chr2 HAVANA gene 189674290 189761193 5758.0 + 0 ENSG00000151687.14 protein_coding ANKAR 2 OTTHUMG00000154398.3 +38393 chr2 HAVANA gene 189746660 189763227 3583.0 - 0 ENSG00000128694.11 protein_coding OSGEPL1 2 OTTHUMG00000164096.2 +38394 chr2 HAVANA gene 189763859 189764456 598.0 - 0 ENSG00000273240.1 antisense AC013468.1 2 OTTHUMG00000186272.1 +38395 chr2 HAVANA gene 189762704 189765556 860.0 + 0 ENSG00000253559.1 antisense OSGEPL1-AS1 2 OTTHUMG00000164097.1 +38396 chr2 HAVANA gene 189770323 189784371 3958.0 - 0 ENSG00000128699.13 protein_coding ORMDL1 2 OTTHUMG00000132661.4 +38397 chr2 HAVANA gene 189784085 189877629 5454.0 + 0 ENSG00000064933.17 protein_coding PMS1 1 OTTHUMG00000132664.7 +38398 chr2 HAVANA gene 189917254 189917758 505.0 - 0 ENSG00000223824.1 processed_pseudogene AC019178.2 1 OTTHUMG00000154453.1 pseudo_consens +38399 chr2 HAVANA gene 189923336 189924216 881.0 + 0 ENSG00000204253.4 processed_pseudogene HNRNPCP2 1 OTTHUMG00000154452.1 pseudo_consens,overlapping_locus +38400 chr2 HAVANA gene 189930277 189931010 440.0 - 0 ENSG00000213110.2 processed_pseudogene AC019178.1 1 OTTHUMG00000154451.1 pseudo_consens +38401 chr2 HAVANA gene 190055697 190062729 2822.0 - 0 ENSG00000138379.4 protein_coding MSTN 2 OTTHUMG00000132663.2 +38402 chr2 HAVANA gene 189879609 190203484 5997.0 + 0 ENSG00000187699.10 protein_coding C2orf88 2 OTTHUMG00000154361.3 overlapping_locus +38403 chr2 HAVANA gene 190189735 190344193 7438.0 - 0 ENSG00000198130.15 protein_coding HIBCH 1 OTTHUMG00000132673.6 +38404 chr2 HAVANA gene 190343470 190371665 3676.0 + 0 ENSG00000151689.12 protein_coding INPP1 2 OTTHUMG00000132672.6 +38405 chr2 HAVANA gene 190454092 190454521 430.0 - 0 ENSG00000272979.1 antisense AC093388.1 2 OTTHUMG00000186273.1 +38406 chr2 HAVANA gene 190408355 190509205 6031.0 + 0 ENSG00000151690.14 protein_coding MFSD6 1 OTTHUMG00000132671.4 +38407 chr2 HAVANA gene 190504342 190534722 6521.0 - 0 ENSG00000189362.11 protein_coding NEMP2 1 OTTHUMG00000154454.2 +38408 chr2 ENSEMBL gene 190553264 190553480 217.0 - 0 ENSG00000251935.1 misc_RNA RN7SKP179 3 +38409 chr2 HAVANA gene 190534855 190568102 404.0 + 0 ENSG00000233654.1 antisense AC108047.1 1 OTTHUMG00000154455.2 +38410 chr2 HAVANA gene 190607660 190649840 7811.0 - 0 ENSG00000284052.1 bidirectional_promoter_lncRNA AC006460.2 2 OTTHUMG00000191990.1 +38411 chr2 HAVANA gene 190646746 190692766 4887.0 + 0 ENSG00000138386.16 protein_coding NAB1 1 OTTHUMG00000132689.4 +38412 chr2 HAVANA gene 190676944 190708716 1125.0 - 0 ENSG00000228509.5 antisense AC006460.1 1 OTTHUMG00000154512.1 +38413 chr2 HAVANA gene 190880797 190882059 919.0 - 0 ENSG00000235852.1 antisense AC005540.1 2 OTTHUMG00000154511.1 +38414 chr2 HAVANA gene 190880827 190965552 9827.0 + 0 ENSG00000115419.12 protein_coding GLS 1 OTTHUMG00000132701.4 +38415 chr2 HAVANA gene 190992639 190993567 618.0 - 0 ENSG00000229023.1 processed_pseudogene AC067945.1 1 OTTHUMG00000154514.1 pseudo_consens,overlapping_locus +38416 chr2 HAVANA gene 191017954 191019079 623.0 + 0 ENSG00000230686.1 antisense AC067945.2 2 OTTHUMG00000154509.1 +38417 chr2 HAVANA gene 190964358 191020960 6053.0 - 0 ENSG00000115415.18 protein_coding STAT1 1 OTTHUMG00000132699.5 overlapping_locus +38418 chr2 HAVANA gene 191021526 191032314 520.0 + 0 ENSG00000231858.5 processed_transcript AC067945.3 1 OTTHUMG00000154513.1 +38419 chr2 ENSEMBL gene 191121950 191122056 107.0 + 0 ENSG00000207402.1 snRNA RNU6-959P 3 +38420 chr2 HAVANA gene 191029576 191151596 4250.0 - 0 ENSG00000138378.18 protein_coding STAT4 1 OTTHUMG00000132700.6 +38421 chr2 HAVANA gene 191154118 191156070 1953.0 - 0 ENSG00000280083.1 TEC AC079777.1 2 OTTHUMG00000176273.1 +38422 chr2 HAVANA gene 191174233 191174835 603.0 + 0 ENSG00000230611.1 processed_pseudogene HMGB1P27 1 OTTHUMG00000154510.1 pseudo_consens +38423 chr2 HAVANA gene 191229165 191246172 909.0 - 0 ENSG00000227542.1 lincRNA AC092614.1 2 OTTHUMG00000154306.1 +38424 chr2 ENSEMBL gene 191370938 191371044 107.0 + 0 ENSG00000252130.1 snRNA RNU6-1045P 3 +38425 chr2 HAVANA gene 191245185 191425389 9533.0 + 0 ENSG00000128641.18 protein_coding MYO1B 1 OTTHUMG00000132718.10 ncRNA_host +38426 chr2 ENSEMBL gene 191682452 191682633 182.0 + 0 ENSG00000274845.1 misc_RNA RF02271 3 +38427 chr2 HAVANA gene 191678068 191696659 13806.0 + 0 ENSG00000173559.12 protein_coding NABP1 2 OTTHUMG00000132720.5 ncRNA_host +38428 chr2 HAVANA gene 191793425 191820250 543.0 + 0 ENSG00000225884.2 antisense AC098872.1 2 OTTHUMG00000154310.2 +38429 chr2 HAVANA gene 191834302 191847255 3229.0 - 0 ENSG00000168497.4 protein_coding CAVIN2 2 OTTHUMG00000154309.2 +38430 chr2 HAVANA gene 191881182 191882205 1024.0 - 0 ENSG00000213946.3 processed_pseudogene DNAJB1P1 1 OTTHUMG00000154320.1 pseudo_consens +38431 chr2 HAVANA gene 191846539 192044525 5155.0 + 0 ENSG00000233766.7 antisense AC098617.1 1 OTTHUMG00000154332.4 +38432 chr2 HAVANA gene 191949043 192195709 6632.0 - 0 ENSG00000144339.11 protein_coding TMEFF2 1 OTTHUMG00000132723.4 +38433 chr2 HAVANA gene 192644102 192645387 626.0 - 0 ENSG00000232227.5 lincRNA AC013401.1 1 OTTHUMG00000154344.1 +38434 chr2 HAVANA gene 192629919 192645706 565.0 + 0 ENSG00000229395.1 lincRNA AC062039.1 2 OTTHUMG00000154343.1 +38435 chr2 HAVANA gene 192774082 192774416 335.0 + 0 ENSG00000226242.1 processed_pseudogene RPS17P8 1 OTTHUMG00000154345.1 pseudo_consens,overlapping_locus +38436 chr2 ENSEMBL gene 192775943 192776073 131.0 + 0 ENSG00000278406.1 misc_RNA RF01981 3 +38437 chr2 HAVANA gene 192749845 192776899 1712.0 + 0 ENSG00000227418.6 lincRNA PCGEM1 2 OTTHUMG00000154342.2 ncRNA_host,overlapping_locus +38438 chr2 HAVANA gene 193256483 193257757 1275.0 + 0 ENSG00000232658.1 processed_pseudogene AC092638.1 1 OTTHUMG00000154353.1 pseudo_consens +38439 chr2 HAVANA gene 193276668 193277614 947.0 - 0 ENSG00000235218.2 processed_pseudogene AC092638.2 1 OTTHUMG00000154357.1 pseudo_consens +38440 chr2 HAVANA gene 193730555 193730689 135.0 - 0 ENSG00000224219.1 processed_pseudogene AC074290.1 2 OTTHUMG00000154354.1 +38441 chr2 HAVANA gene 193898367 193899394 1028.0 + 0 ENSG00000260142.1 lincRNA AC068135.2 2 OTTHUMG00000176276.1 +38442 chr2 HAVANA gene 194027919 194028164 246.0 + 0 ENSG00000224670.1 processed_pseudogene AC068135.1 1 OTTHUMG00000154359.1 pseudo_consens +38443 chr2 HAVANA gene 194129354 194130266 913.0 - 0 ENSG00000215043.2 processed_pseudogene GLULP6 1 OTTHUMG00000154356.1 pseudo_consens +38444 chr2 HAVANA gene 194187379 194188309 931.0 + 0 ENSG00000236695.1 processed_pseudogene HNRNPA1P47 1 OTTHUMG00000154355.1 pseudo_consens +38445 chr2 HAVANA gene 194344269 194419645 1532.0 + 0 ENSG00000225539.5 lincRNA LINC01821 2 OTTHUMG00000154350.3 +38446 chr2 HAVANA gene 194454581 194455142 562.0 - 0 ENSG00000225394.1 processed_pseudogene AC106883.1 1 OTTHUMG00000154368.1 pseudo_consens +38447 chr2 ENSEMBL gene 194658376 194658675 300.0 - 0 ENSG00000276123.1 misc_RNA RF00017 3 +38448 chr2 ENSEMBL gene 194664107 194664174 68.0 - 0 ENSG00000252517.1 snoRNA RF00273 3 +38449 chr2 HAVANA gene 194730595 194761435 2852.0 + 0 ENSG00000230173.1 lincRNA LINC01790 2 OTTHUMG00000154367.1 +38450 chr2 HAVANA gene 195003711 195026370 1028.0 - 0 ENSG00000235056.1 lincRNA AC010983.1 2 OTTHUMG00000154373.1 +38451 chr2 HAVANA gene 195448532 195478925 989.0 + 0 ENSG00000224099.1 lincRNA AC104823.1 2 OTTHUMG00000154379.1 +38452 chr2 ENSEMBL gene 195514036 195514142 107.0 + 0 ENSG00000202206.1 snRNA RNU6-169P 3 +38453 chr2 HAVANA gene 195451778 195515699 503.0 - 0 ENSG00000271893.1 lincRNA AC064834.1 2 OTTHUMG00000185393.1 +38454 chr2 HAVANA gene 195533035 195538681 850.0 + 0 ENSG00000223466.1 lincRNA LINC01825 1 OTTHUMG00000154381.1 +38455 chr2 HAVANA gene 195569628 195572970 555.0 - 0 ENSG00000234919.1 lincRNA LINC01827 1 OTTHUMG00000154378.1 +38456 chr2 HAVANA gene 195582794 195584031 1238.0 - 0 ENSG00000213107.2 processed_pseudogene AHCYP5 1 OTTHUMG00000154377.1 pseudo_consens +38457 chr2 ENSEMBL gene 195670372 195670474 103.0 - 0 ENSG00000201813.1 snRNA RNU6-915P 3 +38458 chr2 HAVANA gene 195575977 195737702 6917.0 + 0 ENSG00000196950.13 protein_coding SLC39A10 2 OTTHUMG00000154380.5 +38459 chr2 HAVANA gene 195994259 195995680 1422.0 - 0 ENSG00000203435.2 processed_pseudogene E2F3P2 1 OTTHUMG00000154439.1 pseudo_consens,overlapping_locus +38460 chr2 HAVANA gene 196063312 196063963 652.0 - 0 ENSG00000227878.2 processed_pseudogene AC114760.1 1 OTTHUMG00000154434.3 pseudo_consens,overlapping_locus +38461 chr2 HAVANA gene 195737703 196068812 21324.0 - 0 ENSG00000118997.13 protein_coding DNAH7 2 OTTHUMG00000154438.6 overlapping_locus +38462 chr2 HAVANA gene 196151263 196154881 2065.0 + 0 ENSG00000272211.1 antisense AC114760.2 2 OTTHUMG00000185371.1 +38463 chr2 HAVANA gene 196133566 196176503 6580.0 - 0 ENSG00000081320.10 protein_coding STK17B 2 OTTHUMG00000132735.6 +38464 chr2 HAVANA gene 196260024 196264204 1607.0 + 0 ENSG00000229056.2 antisense AC020571.1 2 OTTHUMG00000154462.2 +38465 chr2 ENSEMBL gene 196289409 196289707 299.0 + 0 ENSG00000276200.1 misc_RNA RN7SL820P 3 +38466 chr2 HAVANA gene 196189099 196593692 23683.0 - 0 ENSG00000138411.12 protein_coding HECW2 1 OTTHUMG00000154435.12 +38467 chr2 HAVANA gene 196638422 196639497 248.0 - 0 ENSG00000282836.1 antisense AC068544.1 2 OTTHUMG00000191486.1 +38468 chr2 ENSEMBL gene 196686148 196686330 183.0 - 0 ENSG00000252923.1 scaRNA RF00424 3 +38469 chr2 HAVANA gene 196639554 196763490 9683.0 + 0 ENSG00000144395.17 protein_coding CCDC150 2 OTTHUMG00000154475.5 +38470 chr2 HAVANA gene 196763032 196799725 7105.0 - 0 ENSG00000119041.10 protein_coding GTF3C3 1 OTTHUMG00000154633.4 +38471 chr2 HAVANA gene 196805002 196810276 1669.0 - 0 ENSG00000187944.2 protein_coding C2orf66 2 OTTHUMG00000132742.1 +38472 chr2 HAVANA gene 196831975 196832190 216.0 - 0 ENSG00000280176.1 TEC AC012486.1 2 OTTHUMG00000176277.1 +38473 chr2 HAVANA gene 196833004 196927796 12761.0 - 0 ENSG00000197121.14 protein_coding PGAP1 1 OTTHUMG00000132743.6 +38474 chr2 HAVANA gene 197014990 197016015 1026.0 + 0 ENSG00000225636.1 processed_pseudogene HNRNPA3P15 1 OTTHUMG00000154408.1 pseudo_consens +38475 chr2 HAVANA gene 197028711 197030143 1115.0 - 0 ENSG00000224442.1 processed_pseudogene AC017035.1 1 OTTHUMG00000154407.1 pseudo_consens,overlapping_locus +38476 chr2 HAVANA gene 197197991 197199273 455.0 + 0 ENSG00000231621.1 antisense AC013264.1 1 OTTHUMG00000154428.1 +38477 chr2 HAVANA gene 197263111 197263535 425.0 + 0 ENSG00000230482.1 processed_pseudogene ATP5MC2P3 1 OTTHUMG00000154410.2 pseudo_consens +38478 chr2 HAVANA gene 197250858 197302519 1069.0 - 0 ENSG00000236977.1 sense_intronic ANKRD44-IT1 2 OTTHUMG00000154409.1 overlapping_locus +38479 chr2 HAVANA gene 196967017 197311173 10839.0 - 0 ENSG00000065413.19 protein_coding ANKRD44 1 OTTHUMG00000154411.11 overlapping_locus +38480 chr2 HAVANA gene 197311393 197312740 452.0 + 0 ENSG00000225979.1 antisense AC010746.1 2 OTTHUMG00000154427.1 +38481 chr2 HAVANA gene 197379701 197380892 865.0 - 0 ENSG00000213104.3 processed_pseudogene NPM1P46 1 OTTHUMG00000154445.1 pseudo_consens +38482 chr2 ENSEMBL gene 197404718 197404854 137.0 + 0 ENSG00000202434.1 snoRNA RF00394 3 +38483 chr2 HAVANA gene 197389784 197435091 9164.0 - 0 ENSG00000115524.15 protein_coding SF3B1 2 OTTHUMG00000154447.5 +38484 chr2 ENSEMBL gene 197447745 197447851 107.0 + 0 ENSG00000206836.1 snRNA RNU6-1029P 3 +38485 chr2 HAVANA gene 197453423 197475308 2722.0 + 0 ENSG00000115520.8 protein_coding COQ10B 1 OTTHUMG00000132745.2 +38486 chr2 HAVANA gene 197499994 197503457 1977.0 + 0 ENSG00000115541.10 protein_coding HSPE1 1 OTTHUMG00000132749.2 overlapping_locus +38487 chr2 HAVANA gene 197486581 197516737 4245.0 - 0 ENSG00000144381.16 protein_coding HSPD1 2 OTTHUMG00000154463.4 +38488 chr2 HAVANA gene 197533803 197533965 163.0 + 0 ENSG00000231699.1 processed_pseudogene AC020550.1 2 OTTHUMG00000154489.1 overlapping_locus +38489 chr2 HAVANA gene 197500413 197550726 890.0 + 0 ENSG00000270757.1 protein_coding HSPE1-MOB4 2 OTTHUMG00000184877.1 overlapping_locus +38490 chr2 HAVANA gene 197515571 197553699 4296.0 + 0 ENSG00000115540.14 protein_coding MOB4 2 OTTHUMG00000132748.4 overlapping_locus +38491 chr2 HAVANA gene 197568224 197676045 6007.0 - 0 ENSG00000162944.10 protein_coding RFTN2 1 OTTHUMG00000132746.5 +38492 chr2 HAVANA gene 197705369 197708387 3019.0 + 0 ENSG00000247626.4 protein_coding MARS2 2 OTTHUMG00000154487.2 overlapping_locus +38493 chr2 HAVANA gene 197693106 197774823 1032.0 + 0 ENSG00000222017.1 antisense AC011997.1 2 OTTHUMG00000154488.1 overlapping_locus +38494 chr2 HAVANA gene 197726879 197786762 4004.0 - 0 ENSG00000152430.17 protein_coding BOLL 1 OTTHUMG00000132747.4 +38495 chr2 HAVANA gene 198187802 198191521 618.0 - 0 ENSG00000237035.1 lincRNA AC020719.1 2 OTTHUMG00000154464.1 +38496 chr2 HAVANA gene 198299363 198375116 3201.0 - 0 ENSG00000236653.2 lincRNA LINC01923 1 OTTHUMG00000154465.3 +38497 chr2 HAVANA gene 197804702 198572581 8013.0 + 0 ENSG00000115896.15 protein_coding PLCL1 2 OTTHUMG00000132750.8 +38498 chr2 HAVANA gene 198493242 198772356 2134.0 - 0 ENSG00000225421.2 lincRNA AC019330.1 2 OTTHUMG00000154467.3 +38499 chr2 HAVANA gene 198882573 199071791 556.0 - 0 ENSG00000231557.1 lincRNA AC020718.1 2 OTTHUMG00000154472.2 +38500 chr2 HAVANA gene 199108584 199110088 1505.0 + 0 ENSG00000230407.1 processed_pseudogene AC018717.1 1 OTTHUMG00000154471.2 pseudo_consens +38501 chr2 ENSEMBL gene 199191059 199191120 62.0 + 0 ENSG00000238698.1 snRNA RNU7-147P 3 +38502 chr2 HAVANA gene 199325310 199329362 831.0 + 0 ENSG00000257045.1 antisense AC016746.1 2 OTTHUMG00000168440.1 +38503 chr2 HAVANA gene 199269500 199471266 10958.0 - 0 ENSG00000119042.16 protein_coding SATB2 2 OTTHUMG00000132767.5 +38504 chr2 HAVANA gene 199457700 199476935 4470.0 + 0 ENSG00000225953.2 antisense SATB2-AS1 2 OTTHUMG00000154470.1 +38505 chr2 HAVANA gene 199608068 199659132 2473.0 + 0 ENSG00000238217.5 lincRNA LINC01877 2 OTTHUMG00000154493.2 +38506 chr2 HAVANA gene 199659551 199660729 1179.0 + 0 ENSG00000213938.3 processed_pseudogene SEPHS1P6 1 OTTHUMG00000154492.1 pseudo_consens +38507 chr2 HAVANA gene 199760544 199851173 2708.0 - 0 ENSG00000226124.7 protein_coding FTCDNL1 1 OTTHUMG00000154481.4 +38508 chr2 HAVANA gene 199872172 199872378 207.0 + 0 ENSG00000227004.2 processed_pseudogene AC108032.1 2 OTTHUMG00000154482.2 +38509 chr2 ENSEMBL gene 199901081 199901377 297.0 - 0 ENSG00000240302.3 misc_RNA RN7SL717P 3 +38510 chr2 HAVANA gene 199867396 199911159 6656.0 - 0 ENSG00000232732.9 processed_transcript AC097717.1 1 OTTHUMG00000154483.9 ncRNA_host +38511 chr2 HAVANA gene 199929975 199955736 10496.0 - 0 ENSG00000162971.10 protein_coding TYW5 2 OTTHUMG00000132770.3 +38512 chr2 HAVANA gene 199911256 199955935 4296.0 + 0 ENSG00000178074.5 protein_coding C2orf69 2 OTTHUMG00000154480.1 overlapping_locus +38513 chr2 HAVANA gene 199955317 200008540 1624.0 + 0 ENSG00000162972.10 protein_coding MAIP1 2 OTTHUMG00000132771.4 overlapping_locus +38514 chr2 ENSEMBL gene 200373175 200373269 95.0 + 0 ENSG00000201649.1 misc_RNA RNY4P34 3 +38515 chr2 HAVANA gene 200305881 200482263 10437.0 + 0 ENSG00000196141.13 protein_coding SPATS2L 1 OTTHUMG00000154589.14 ncRNA_host +38516 chr2 HAVANA gene 200488952 200519784 4915.0 - 0 ENSG00000155729.12 protein_coding KCTD18 2 OTTHUMG00000132781.2 +38517 chr2 HAVANA gene 200510008 200583782 6022.0 + 0 ENSG00000163535.17 protein_coding SGO2 2 OTTHUMG00000154535.2 +38518 chr2 HAVANA gene 200585868 200677064 5556.0 + 0 ENSG00000138356.13 protein_coding AOX1 1 OTTHUMG00000154536.5 +38519 chr2 HAVANA gene 200678233 200734109 4310.0 + 0 ENSG00000244301.6 transcribed_unprocessed_pseudogene AOX3P 2 OTTHUMG00000154534.3 overlapping_locus +38520 chr2 HAVANA gene 200712305 200735177 2050.0 - 0 ENSG00000237166.1 lincRNA LINC01792 2 OTTHUMG00000154537.1 +38521 chr2 HAVANA gene 200695723 200748040 1218.0 + 0 ENSG00000284084.1 processed_transcript AOX3P-AOX2P 2 OTTHUMG00000191899.1 overlapping_locus +38522 chr2 ENSEMBL gene 200775584 200775750 167.0 + 0 ENSG00000201737.1 snRNA RNU1-133P 3 +38523 chr2 HAVANA gene 200738608 200794239 3835.0 + 0 ENSG00000243478.9 transcribed_unprocessed_pseudogene AOX2P 2 OTTHUMG00000154538.8 overlapping_locus +38524 chr2 HAVANA gene 200780495 200812170 877.0 - 0 ENSG00000230408.3 antisense AC007163.1 2 OTTHUMG00000154546.3 +38525 chr2 HAVANA gene 200810594 200827338 8085.0 + 0 ENSG00000082153.17 protein_coding BZW1 1 OTTHUMG00000154560.19 +38526 chr2 ENSEMBL gene 200830009 200830116 108.0 + 0 ENSG00000207116.1 snRNA RNU6-31P 3 +38527 chr2 HAVANA gene 200844240 200845461 1222.0 + 0 ENSG00000224346.1 processed_pseudogene BICD1P1 1 OTTHUMG00000154576.2 pseudo_consens +38528 chr2 ENSEMBL gene 200849038 200849144 107.0 - 0 ENSG00000223092.1 rRNA_pseudogene RNA5SP115 3 +38529 chr2 ENSEMBL gene 200863152 200863247 96.0 - 0 ENSG00000252759.1 misc_RNA RF00019 3 +38530 chr2 HAVANA gene 200853009 200864744 5170.0 - 0 ENSG00000013441.15 protein_coding CLK1 2 OTTHUMG00000132784.3 ncRNA_host +38531 chr2 ENSEMBL gene 200881715 200881821 107.0 - 0 ENSG00000201499.1 snRNA RNU6-312P 3 +38532 chr2 HAVANA gene 200870907 200889303 2914.0 - 0 ENSG00000240344.8 protein_coding PPIL3 1 OTTHUMG00000132782.25 ncRNA_host +38533 chr2 ENSEMBL gene 200899020 200899121 102.0 + 0 ENSG00000252916.1 snRNA RNU6-762P 3 +38534 chr2 HAVANA gene 200889327 200903930 1985.0 + 0 ENSG00000196290.14 protein_coding NIF3L1 1 OTTHUMG00000154588.4 ncRNA_host +38535 chr2 HAVANA gene 200908973 200963680 5835.0 - 0 ENSG00000115942.8 protein_coding ORC2 2 OTTHUMG00000132783.24 +38536 chr2 HAVANA gene 200963263 201009102 973.0 + 0 ENSG00000183308.6 antisense AC005037.1 1 OTTHUMG00000154691.1 +38537 chr2 HAVANA gene 201063089 201064051 963.0 + 0 ENSG00000225695.1 processed_pseudogene HNRNPA1P35 1 OTTHUMG00000154714.1 pseudo_consens +38538 chr2 HAVANA gene 201066691 201067191 501.0 + 0 ENSG00000226658.1 processed_pseudogene RPL23AP30 1 OTTHUMG00000154712.2 pseudo_consens +38539 chr2 HAVANA gene 200973718 201071671 12810.0 - 0 ENSG00000155744.9 protein_coding FAM126B 2 OTTHUMG00000132823.15 +38540 chr2 ENSEMBL gene 201079842 201079944 103.0 + 0 ENSG00000252148.1 snRNA RNU6-1206P 3 +38541 chr2 HAVANA gene 201071433 201085750 1103.0 + 0 ENSG00000119013.8 protein_coding NDUFB3 2 OTTHUMG00000132820.3 ncRNA_host +38542 chr2 ENSEMBL gene 201097744 201098091 348.0 + 0 ENSG00000273975.1 misc_RNA RF00017 3 +38543 chr2 HAVANA gene 201102089 201102957 555.0 - 0 ENSG00000224672.4 processed_pseudogene RPL17P10 1 OTTHUMG00000154710.1 pseudo_consens +38544 chr2 HAVANA gene 201101382 201103136 1269.0 + 0 ENSG00000232719.1 lincRNA AC007272.1 2 OTTHUMG00000157083.1 +38545 chr2 HAVANA gene 201137516 201140027 1542.0 - 0 ENSG00000232133.1 processed_pseudogene IMPDH1P10 2 OTTHUMG00000154711.1 +38546 chr2 ENSEMBL gene 201141904 201141966 63.0 + 0 ENSG00000238829.1 snRNA RNU7-45P 3 +38547 chr2 HAVANA gene 201140278 201157823 4334.0 - 0 ENSG00000226312.7 antisense CFLAR-AS1 2 OTTHUMG00000154713.4 +38548 chr2 HAVANA gene 201162484 201162680 197.0 - 0 ENSG00000235579.1 processed_pseudogene AC007283.2 1 OTTHUMG00000154715.1 pseudo_consens +38549 chr2 HAVANA gene 201166965 201167546 445.0 + 0 ENSG00000234431.2 3prime_overlapping_ncRNA AC007283.1 2 OTTHUMG00000154717.1 overlapping_locus +38550 chr2 HAVANA gene 201116104 201176687 22529.0 + 0 ENSG00000003402.19 protein_coding CFLAR 1 OTTHUMG00000132819.19 ncRNA_host,overlapping_locus +38551 chr2 HAVANA gene 201212283 201213081 799.0 - 0 ENSG00000227348.1 unprocessed_pseudogene MTND5P25 2 OTTHUMG00000154740.1 +38552 chr2 HAVANA gene 201213298 201214660 1363.0 - 0 ENSG00000225796.2 unprocessed_pseudogene MTND4P23 2 OTTHUMG00000154739.1 overlapping_locus +38553 chr2 HAVANA gene 201214653 201214950 298.0 - 0 ENSG00000235318.3 unprocessed_pseudogene MTND4LP13 2 OTTHUMG00000154738.1 overlapping_locus +38554 chr2 HAVANA gene 201182881 201229406 7598.0 + 0 ENSG00000003400.14 protein_coding CASP10 2 OTTHUMG00000132818.4 +38555 chr2 HAVANA gene 201233443 201287711 7243.0 + 0 ENSG00000064012.21 protein_coding CASP8 1 OTTHUMG00000132821.16 +38556 chr2 HAVANA gene 201288271 201357398 2635.0 - 0 ENSG00000155749.12 protein_coding ALS2CR12 1 OTTHUMG00000132824.6 +38557 chr2 HAVANA gene 201410544 201413308 2765.0 - 0 ENSG00000213090.2 processed_pseudogene AC007256.1 1 OTTHUMG00000154748.1 pseudo_consens,overlapping_locus +38558 chr2 ENSEMBL gene 201423513 201423604 92.0 + 0 ENSG00000202008.1 misc_RNA RF00019 3 +38559 chr2 HAVANA gene 201377207 201451579 7595.0 - 0 ENSG00000115993.12 protein_coding TRAK2 2 OTTHUMG00000132822.11 overlapping_locus +38560 chr2 HAVANA gene 201387858 201480846 3242.0 + 0 ENSG00000082146.12 protein_coding STRADB 2 OTTHUMG00000132831.6 ncRNA_host +38561 chr2 HAVANA gene 201549631 201550307 677.0 + 0 ENSG00000234842.1 unprocessed_pseudogene MTCO2P16 2 OTTHUMG00000154761.1 +38562 chr2 HAVANA gene 201550524 201551049 526.0 + 0 ENSG00000224299.1 unprocessed_pseudogene MTATP6P16 2 OTTHUMG00000154759.1 +38563 chr2 HAVANA gene 201552859 201553612 754.0 + 0 ENSG00000227736.1 unprocessed_pseudogene MTCO3P16 2 OTTHUMG00000154756.1 +38564 chr2 HAVANA gene 201553688 201554031 344.0 + 0 ENSG00000224590.1 unprocessed_pseudogene MTND3P16 2 OTTHUMG00000154755.1 +38565 chr2 HAVANA gene 201554096 201554390 295.0 + 0 ENSG00000234731.2 unprocessed_pseudogene MTND4LP16 2 OTTHUMG00000154758.1 overlapping_locus +38566 chr2 HAVANA gene 201554384 201556051 1372.0 + 0 ENSG00000249177.1 unprocessed_pseudogene MTND4P29 2 OTTHUMG00000154760.1 overlapping_locus +38567 chr2 HAVANA gene 201556892 201558265 1374.0 + 0 ENSG00000227841.1 unprocessed_pseudogene MTND5P31 2 OTTHUMG00000154757.1 +38568 chr2 HAVANA gene 201487425 201619178 6815.0 - 0 ENSG00000155754.14 protein_coding C2CD6 1 OTTHUMG00000132830.3 +38569 chr2 HAVANA gene 201621646 201623430 1785.0 - 0 ENSG00000241790.2 processed_pseudogene ENO1P4 2 OTTHUMG00000154527.3 overlapping_locus +38570 chr2 HAVANA gene 201620184 201643570 7647.0 - 0 ENSG00000155755.18 protein_coding TMEM237 2 OTTHUMG00000154526.9 overlapping_locus +38571 chr2 ENSEMBL gene 201646716 201646820 105.0 + 0 ENSG00000222972.1 snRNA RNU6-651P 3 +38572 chr2 HAVANA gene 201644870 201698694 4924.0 - 0 ENSG00000082126.17 protein_coding MPP4 1 OTTHUMG00000154525.7 +38573 chr2 HAVANA gene 201762737 201763573 837.0 + 0 ENSG00000230799.1 processed_pseudogene AC007279.1 1 OTTHUMG00000154566.1 pseudo_consens +38574 chr2 HAVANA gene 201700554 201781189 10384.0 - 0 ENSG00000003393.14 protein_coding ALS2 2 OTTHUMG00000154507.7 +38575 chr2 ENSEMBL gene 201808681 201808782 102.0 + 0 ENSG00000202137.1 misc_RNA RF00019 3 +38576 chr2 HAVANA gene 201824548 201824832 285.0 + 0 ENSG00000231124.1 processed_pseudogene UBE2V1P11 1 OTTHUMG00000154567.2 pseudo_consens,overlapping_locus +38577 chr2 HAVANA gene 201790461 201895550 6141.0 + 0 ENSG00000138395.14 protein_coding CDK15 1 OTTHUMG00000132838.5 ncRNA_host,overlapping_locus +38578 chr2 ENSEMBL gene 201927439 201927543 105.0 + 0 ENSG00000212184.1 snRNA RNU6-440P 3 +38579 chr2 HAVANA gene 202032770 202033537 768.0 - 0 ENSG00000273209.1 lincRNA AC069148.1 2 OTTHUMG00000186300.1 +38580 chr2 HAVANA gene 202034587 202038445 3859.0 + 0 ENSG00000155760.2 protein_coding FZD7 2 OTTHUMG00000132841.1 +38581 chr2 HAVANA gene 202113626 202117058 3093.0 - 0 ENSG00000222035.3 antisense AC079354.1 1 OTTHUMG00000154578.2 +38582 chr2 HAVANA gene 202178660 202179391 311.0 - 0 ENSG00000231903.1 antisense AC079354.3 1 OTTHUMG00000154582.1 +38583 chr2 HAVANA gene 202179297 202179971 675.0 + 0 ENSG00000227890.1 processed_pseudogene PSMA2P3 1 OTTHUMG00000154579.1 pseudo_consens,overlapping_locus +38584 chr2 HAVANA gene 202201384 202201886 503.0 - 0 ENSG00000223825.5 processed_pseudogene DAZAP2P1 1 OTTHUMG00000154581.1 pseudo_consens +38585 chr2 HAVANA gene 202073289 202205203 7943.0 + 0 ENSG00000182329.12 protein_coding KIAA2012 2 OTTHUMG00000154580.6 overlapping_locus +38586 chr2 HAVANA gene 202231696 202231849 154.0 + 0 ENSG00000224463.1 processed_pseudogene AC079354.2 2 OTTHUMG00000154597.1 +38587 chr2 HAVANA gene 202206180 202238608 2164.0 - 0 ENSG00000116030.16 protein_coding SUMO1 1 OTTHUMG00000132839.5 +38588 chr2 ENSEMBL gene 202276431 202276518 88.0 + 0 ENSG00000212534.1 snoRNA SNORD70 3 +38589 chr2 ENSEMBL gene 202278108 202278192 85.0 + 0 ENSG00000212309.1 snoRNA RF00575 3 +38590 chr2 ENSEMBL gene 202291332 202291421 90.0 + 0 ENSG00000271852.1 snoRNA SNORD11B 3 +38591 chr2 ENSEMBL gene 202293051 202293134 84.0 + 0 ENSG00000238317.2 snoRNA SNORD11 3 +38592 chr2 HAVANA gene 202265716 202303666 3299.0 + 0 ENSG00000055044.10 protein_coding NOP58 2 OTTHUMG00000132840.3 ncRNA_host +38593 chr2 ENSEMBL gene 202333439 202333728 290.0 + 0 ENSG00000264275.1 misc_RNA RN7SL753P 3 +38594 chr2 HAVANA gene 202336024 202336727 704.0 - 0 ENSG00000226261.1 processed_pseudogene AC064836.1 1 OTTHUMG00000154608.1 pseudo_consens +38595 chr2 HAVANA gene 202336739 202337200 462.0 + 0 ENSG00000272966.1 lincRNA AC064836.2 2 OTTHUMG00000186302.1 +38596 chr2 ENSEMBL gene 202357076 202357417 342.0 - 0 ENSG00000242696.3 misc_RNA RN7SL40P 3 +38597 chr2 HAVANA gene 202374932 202375604 673.0 - 0 ENSG00000273456.1 lincRNA AC064836.3 2 OTTHUMG00000186303.1 +38598 chr2 HAVANA gene 202505012 202505343 332.0 - 0 ENSG00000270915.1 processed_pseudogene AC073410.2 1 OTTHUMG00000184348.1 pseudo_consens +38599 chr2 HAVANA gene 202520401 202520989 589.0 + 0 ENSG00000236047.1 processed_pseudogene AC073410.1 1 OTTHUMG00000154607.1 pseudo_consens,overlapping_locus +38600 chr2 HAVANA gene 202376936 202567751 11900.0 + 0 ENSG00000204217.13 protein_coding BMPR2 1 OTTHUMG00000133617.4 overlapping_locus +38601 chr2 HAVANA gene 202614214 202614704 491.0 + 0 ENSG00000223619.1 unprocessed_pseudogene MTCO1P17 2 OTTHUMG00000154675.1 +38602 chr2 HAVANA gene 202614853 202615529 677.0 + 0 ENSG00000233888.2 unprocessed_pseudogene MTCO2P17 2 OTTHUMG00000154676.3 +38603 chr2 HAVANA gene 202615769 202616440 672.0 + 0 ENSG00000235433.1 unprocessed_pseudogene MTATP6P17 2 OTTHUMG00000154677.1 +38604 chr2 HAVANA gene 202616700 202617212 513.0 + 0 ENSG00000237542.1 unprocessed_pseudogene MTCO3P17 2 OTTHUMG00000154678.1 +38605 chr2 HAVANA gene 202617284 202617627 344.0 + 0 ENSG00000233134.1 unprocessed_pseudogene MTND3P17 2 OTTHUMG00000154680.2 +38606 chr2 HAVANA gene 202617695 202617987 293.0 + 0 ENSG00000241221.2 unprocessed_pseudogene MTND4LP17 2 OTTHUMG00000154672.3 overlapping_locus +38607 chr2 HAVANA gene 202617983 202618881 899.0 + 0 ENSG00000227454.2 unprocessed_pseudogene MTND4P30 2 OTTHUMG00000154679.1 overlapping_locus +38608 chr2 HAVANA gene 202619185 202619896 712.0 - 0 ENSG00000233311.1 processed_pseudogene MTCO1P54 2 OTTHUMG00000154673.1 +38609 chr2 HAVANA gene 202635188 202769757 5986.0 + 0 ENSG00000138439.11 protein_coding FAM117B 2 OTTHUMG00000154550.3 +38610 chr2 HAVANA gene 202773720 202774360 552.0 - 0 ENSG00000240761.1 processed_pseudogene AC098831.1 2 OTTHUMG00000155491.1 fragmented_locus +38611 chr2 HAVANA gene 202840331 202841781 1451.0 - 0 ENSG00000233579.1 processed_pseudogene KRT8P15 1 OTTHUMG00000154529.1 pseudo_consens,overlapping_locus +38612 chr2 HAVANA gene 202773150 202871985 10598.0 - 0 ENSG00000163596.16 protein_coding ICA1L 1 OTTHUMG00000132856.14 overlapping_locus +38613 chr2 HAVANA gene 202924609 202925904 1296.0 + 0 ENSG00000232479.2 processed_pseudogene AC010900.1 1 OTTHUMG00000154530.2 pseudo_consens,overlapping_locus +38614 chr2 HAVANA gene 202912214 202987063 8636.0 + 0 ENSG00000138380.17 protein_coding CARF 1 OTTHUMG00000154528.9 overlapping_locus +38615 chr2 HAVANA gene 202995194 202995403 210.0 + 0 ENSG00000270664.1 processed_pseudogene AC010900.2 2 OTTHUMG00000184259.1 +38616 chr2 HAVANA gene 202874782 203014798 9098.0 - 0 ENSG00000138442.9 protein_coding WDR12 2 OTTHUMG00000132855.5 +38617 chr2 HAVANA gene 203040108 203040899 741.0 + 0 ENSG00000232994.1 processed_pseudogene RPL7P14 1 OTTHUMG00000154574.2 pseudo_consens,overlapping_locus +38618 chr2 ENSEMBL gene 203052285 203052418 134.0 - 0 ENSG00000202059.1 snoRNA RF00408 3 +38619 chr2 HAVANA gene 203061314 203062403 1090.0 - 0 ENSG00000228513.1 processed_pseudogene AC023271.1 2 OTTHUMG00000154096.2 +38620 chr2 HAVANA gene 203074685 203075142 458.0 - 0 ENSG00000225124.1 processed_pseudogene RPL23AP36 1 OTTHUMG00000154573.2 pseudo_consens +38621 chr2 HAVANA gene 203190780 203191277 498.0 + 0 ENSG00000204196.5 processed_pseudogene RPL12P16 2 OTTHUMG00000155492.1 overlapping_locus +38622 chr2 HAVANA gene 203014879 203226378 16376.0 + 0 ENSG00000144426.18 protein_coding NBEAL1 2 OTTHUMG00000154129.7 overlapping_locus +38623 chr2 ENSEMBL gene 203259604 203259897 294.0 + 0 ENSG00000264041.2 misc_RNA RN7SL670P 3 +38624 chr2 HAVANA gene 203238940 203305611 3079.0 + 0 ENSG00000119004.15 protein_coding CYP20A1 1 OTTHUMG00000132854.13 ncRNA_host +38625 chr2 HAVANA gene 203315390 203315871 482.0 - 0 ENSG00000238285.1 processed_pseudogene MRPL50P2 1 OTTHUMG00000154584.1 pseudo_consens +38626 chr2 HAVANA gene 203328459 203329226 427.0 - 0 ENSG00000256458.1 antisense AC080075.1 2 OTTHUMG00000168729.1 +38627 chr2 HAVANA gene 203328219 203447723 23331.0 + 0 ENSG00000138443.15 protein_coding ABI2 1 OTTHUMG00000132879.15 +38628 chr2 HAVANA gene 203394345 203535410 11697.0 - 0 ENSG00000173166.17 protein_coding RAPH1 2 OTTHUMG00000132876.6 +38629 chr2 HAVANA gene 203634577 203636016 1440.0 - 0 ENSG00000233459.1 processed_pseudogene AC125238.2 1 OTTHUMG00000154624.1 pseudo_consens +38630 chr2 HAVANA gene 203672175 203672423 249.0 - 0 ENSG00000233031.1 processed_pseudogene AC125238.1 1 OTTHUMG00000154625.1 pseudo_consens +38631 chr2 HAVANA gene 203706475 203738912 4885.0 + 0 ENSG00000178562.17 protein_coding CD28 1 OTTHUMG00000132878.5 +38632 chr2 HAVANA gene 203764295 203765593 1299.0 - 0 ENSG00000224791.1 processed_pseudogene KRT18P39 1 OTTHUMG00000154623.1 pseudo_consens +38633 chr2 HAVANA gene 203772631 203773502 872.0 - 0 ENSG00000213925.3 processed_pseudogene NPM1P33 1 OTTHUMG00000154626.1 pseudo_consens +38634 chr2 ENSEMBL gene 203782037 203782143 107.0 + 0 ENSG00000206970.1 snRNA RNU6-474P 3 +38635 chr2 HAVANA gene 203867771 203873965 2140.0 + 0 ENSG00000163599.15 protein_coding CTLA4 2 OTTHUMG00000132877.7 +38636 chr2 HAVANA gene 203936748 203961577 2645.0 + 0 ENSG00000163600.12 protein_coding ICOS 2 OTTHUMG00000132880.2 +38637 chr2 HAVANA gene 204065706 204067363 970.0 + 0 ENSG00000235951.1 processed_pseudogene AC009965.2 2 OTTHUMG00000154539.1 +38638 chr2 HAVANA gene 204090457 204109849 570.0 + 0 ENSG00000234714.1 lincRNA AC009965.1 2 OTTHUMG00000154540.1 +38639 chr2 HAVANA gene 204228137 204234985 541.0 - 0 ENSG00000237271.1 lincRNA AC009498.1 2 OTTHUMG00000154544.1 +38640 chr2 HAVANA gene 204306842 204307364 523.0 + 0 ENSG00000236681.1 processed_pseudogene DSTNP5 1 OTTHUMG00000154541.1 pseudo_consens +38641 chr2 HAVANA gene 204379095 204379792 698.0 + 0 ENSG00000225304.1 processed_pseudogene AC106901.1 1 OTTHUMG00000154545.1 pseudo_consens +38642 chr2 HAVANA gene 204470076 204473837 588.0 - 0 ENSG00000236634.1 lincRNA AC016903.1 1 OTTHUMG00000154543.1 +38643 chr2 HAVANA gene 204475356 204507672 326.0 + 0 ENSG00000237843.1 lincRNA AC016903.2 2 OTTHUMG00000154542.1 +38644 chr2 HAVANA gene 205253304 205253503 200.0 - 0 ENSG00000223890.1 processed_pseudogene AC008171.1 2 OTTHUMG00000154565.1 +38645 chr2 HAVANA gene 204545793 205620162 10382.0 + 0 ENSG00000116117.17 protein_coding PARD3B 1 OTTHUMG00000154562.4 +38646 chr2 HAVANA gene 205756469 205764006 1623.0 - 0 ENSG00000225216.6 antisense AC007362.1 1 OTTHUMG00000154647.3 +38647 chr2 HAVANA gene 205681990 205798133 13896.0 + 0 ENSG00000118257.16 protein_coding NRP2 2 OTTHUMG00000132893.5 +38648 chr2 ENSEMBL gene 205900630 205900958 329.0 + 0 ENSG00000201875.1 misc_RNA RN7SKP178 3 +38649 chr2 HAVANA gene 205949091 205950145 502.0 + 0 ENSG00000213739.3 processed_pseudogene PPIAP68 1 OTTHUMG00000154643.2 pseudo_consens +38650 chr2 HAVANA gene 205989585 206000858 781.0 + 0 ENSG00000225610.1 antisense AC007679.1 2 OTTHUMG00000154652.1 +38651 chr2 ENSEMBL gene 206007880 206007974 95.0 - 0 ENSG00000252485.1 misc_RNA RF00006 3 +38652 chr2 ENSEMBL gene 206025593 206025697 105.0 + 0 ENSG00000207386.1 misc_RNA RF00019 3 +38653 chr2 HAVANA gene 206040432 206040845 414.0 + 0 ENSG00000237041.1 processed_pseudogene AC007679.2 1 OTTHUMG00000154655.2 pseudo_consens +38654 chr2 HAVANA gene 205993721 206086303 14373.0 - 0 ENSG00000114933.15 protein_coding INO80D 2 OTTHUMG00000154649.3 ncRNA_host +38655 chr2 HAVANA gene 206084605 206086564 1034.0 + 0 ENSG00000227946.1 lincRNA AC007383.2 1 OTTHUMG00000154653.1 +38656 chr2 HAVANA gene 206116110 206116500 391.0 - 0 ENSG00000237580.1 processed_pseudogene GCSHP3 2 OTTHUMG00000154650.1 overlapping_locus +38657 chr2 HAVANA gene 206115547 206122323 1411.0 + 0 ENSG00000231955.1 antisense AC007383.3 2 OTTHUMG00000154651.1 +38658 chr2 HAVANA gene 206114817 206159603 12268.0 - 0 ENSG00000023228.13 protein_coding NDUFS1 2 OTTHUMG00000132892.6 overlapping_locus +38659 chr2 ENSEMBL gene 206160843 206161024 182.0 + 0 ENSG00000277502.1 misc_RNA RF02271 3 +38660 chr2 ENSEMBL gene 206161841 206161929 89.0 + 0 ENSG00000281780.1 snoRNA RF00134 3 +38661 chr2 ENSEMBL gene 206161878 206161957 80.0 + 0 ENSG00000207047.2 snoRNA SNORD51 3 +38662 chr2 ENSEMBL gene 206162228 206162359 132.0 + 0 ENSG00000207406.1 snoRNA SNORA41 3 +38663 chr2 HAVANA gene 206159585 206162928 1915.0 + 0 ENSG00000114942.13 protein_coding EEF1B2 2 OTTHUMG00000132891.3 ncRNA_host +38664 chr2 HAVANA gene 206175316 206218047 2834.0 - 0 ENSG00000183671.12 protein_coding GPR1 2 OTTHUMG00000132894.3 +38665 chr2 ENSEMBL gene 206221315 206221634 320.0 + 0 ENSG00000222496.1 misc_RNA RN7SKP200 3 +38666 chr2 HAVANA gene 206236236 206236871 636.0 - 0 ENSG00000159186.4 processed_pseudogene AC007383.1 1 OTTHUMG00000154644.1 pseudo_consens +38667 chr2 HAVANA gene 206259628 206259918 291.0 - 0 ENSG00000224070.1 processed_pseudogene HMGN1P6 1 OTTHUMG00000154645.1 pseudo_consens +38668 chr2 ENSEMBL gene 206260066 206260214 149.0 - 0 ENSG00000252716.1 misc_RNA RN7SKP260 3 +38669 chr2 HAVANA gene 206203376 206265326 3212.0 + 0 ENSG00000279220.3 processed_transcript GPR1-AS 2 OTTHUMG00000189431.3 ncRNA_host +38670 chr2 HAVANA gene 206274663 206314438 10912.0 + 0 ENSG00000204186.8 protein_coding ZDBF2 2 OTTHUMG00000154648.3 +38671 chr2 HAVANA gene 206410087 206410909 823.0 - 0 ENSG00000180105.11 processed_pseudogene AC017081.1 1 OTTHUMG00000154654.2 pseudo_consens +38672 chr2 HAVANA gene 206419292 206420238 947.0 - 0 ENSG00000234491.1 processed_pseudogene HNRNPA1P51 1 OTTHUMG00000154646.1 pseudo_consens +38673 chr2 HAVANA gene 206606497 206609812 440.0 - 0 ENSG00000228577.1 antisense AC010731.2 2 OTTHUMG00000154728.1 +38674 chr2 HAVANA gene 206443539 206621130 6421.0 + 0 ENSG00000114948.12 protein_coding ADAM23 2 OTTHUMG00000132919.4 +38675 chr2 HAVANA gene 206640073 206641282 566.0 + 0 ENSG00000231653.1 antisense AC010731.3 2 OTTHUMG00000154730.1 +38676 chr2 HAVANA gene 206642412 206649011 971.0 + 0 ENSG00000235118.8 protein_coding FAM237A 1 OTTHUMG00000154723.3 +38677 chr2 HAVANA gene 206686517 206687362 846.0 - 0 ENSG00000213083.3 processed_pseudogene AC010731.1 1 OTTHUMG00000154731.1 pseudo_consens,overlapping_locus +38678 chr2 ENSEMBL gene 206701065 206701185 121.0 - 0 ENSG00000207319.1 misc_RNA RF00019 3 +38679 chr2 HAVANA gene 206651621 206718396 2140.0 - 0 ENSG00000232125.3 protein_coding DYTN 2 OTTHUMG00000154729.2 ncRNA_host,overlapping_locus +38680 chr2 HAVANA gene 206737763 206765547 3110.0 - 0 ENSG00000138400.12 protein_coding MDH1B 1 OTTHUMG00000132918.4 +38681 chr2 ENSEMBL gene 206783234 206783308 75.0 - 0 ENSG00000283469.1 miRNA MIR3130-1 3 +38682 chr2 ENSEMBL gene 206783234 206783308 75.0 + 0 ENSG00000263468.1 miRNA MIR3130-2 3 +38683 chr2 HAVANA gene 206765357 206792509 6079.0 + 0 ENSG00000118246.13 protein_coding FASTKD2 2 OTTHUMG00000132917.4 ncRNA_host +38684 chr2 HAVANA gene 206821190 206822294 1105.0 - 0 ENSG00000260171.1 lincRNA AC008269.2 2 OTTHUMG00000176286.1 +38685 chr2 HAVANA gene 206866795 206868289 646.0 + 0 ENSG00000229321.1 lincRNA AC008269.1 1 OTTHUMG00000154733.1 +38686 chr2 HAVANA gene 206939554 206969474 1209.0 + 0 ENSG00000144410.4 protein_coding CPO 2 OTTHUMG00000088987.2 +38687 chr2 ENSEMBL gene 207109987 207110073 87.0 - 0 ENSG00000253008.2 miRNA MIR2355 3 +38688 chr2 HAVANA gene 207120884 207122044 655.0 - 0 ENSG00000237892.1 sense_intronic KLF7-IT1 1 OTTHUMG00000154726.1 overlapping_locus +38689 chr2 ENSEMBL gene 207166400 207166498 99.0 + 0 ENSG00000277590.1 miRNA MIR7845 3 +38690 chr2 HAVANA gene 207074137 207167267 9262.0 - 0 ENSG00000118263.14 protein_coding KLF7 2 OTTHUMG00000132935.3 ncRNA_host,overlapping_locus +38691 chr2 HAVANA gene 207173634 207222790 554.0 + 0 ENSG00000224342.1 lincRNA AC007879.1 2 OTTHUMG00000154727.1 +38692 chr2 HAVANA gene 207226949 207228308 551.0 + 0 ENSG00000225916.1 lincRNA AC007879.2 1 OTTHUMG00000154724.1 +38693 chr2 HAVANA gene 207186717 207236066 1095.0 - 0 ENSG00000234902.6 lincRNA AC007879.3 2 OTTHUMG00000154732.1 overlapping_locus +38694 chr2 HAVANA gene 207235299 207237875 361.0 - 0 ENSG00000240440.1 lincRNA AC007879.4 2 OTTHUMG00000154725.1 overlapping_locus +38695 chr2 HAVANA gene 207239650 207245887 1204.0 + 0 ENSG00000229647.1 lincRNA MYOSLID 1 OTTHUMG00000154787.1 +38696 chr2 ENSEMBL gene 207269275 207269424 150.0 - 0 ENSG00000221628.1 miRNA MIR1302-4 3 +38697 chr2 HAVANA gene 207260445 207270690 523.0 + 0 ENSG00000225064.1 lincRNA LINC01802 1 OTTHUMG00000154784.1 +38698 chr2 HAVANA gene 207239864 207529795 1284.0 - 0 ENSG00000223725.6 antisense AC009226.1 1 OTTHUMG00000154795.2 ncRNA_host +38699 chr2 HAVANA gene 207529737 207603431 9575.0 + 0 ENSG00000118260.14 protein_coding CREB1 1 OTTHUMG00000132936.5 +38700 chr2 HAVANA gene 207580631 207625928 6798.0 - 0 ENSG00000144401.14 protein_coding METTL21A 1 OTTHUMG00000132934.4 +38701 chr2 HAVANA gene 207654781 207654951 171.0 + 0 ENSG00000223433.1 processed_pseudogene RPS29P9 1 OTTHUMG00000154789.1 pseudo_consens +38702 chr2 HAVANA gene 207662375 207667024 492.0 + 0 ENSG00000224137.1 lincRNA LINC01857 1 OTTHUMG00000154786.1 +38703 chr2 ENSEMBL gene 207680533 207680639 107.0 - 0 ENSG00000199251.1 snRNA RNU6-664P 3 +38704 chr2 HAVANA gene 207681590 207682033 444.0 + 0 ENSG00000213082.3 processed_pseudogene PPP1R14BP2 1 OTTHUMG00000154793.1 pseudo_consens +38705 chr2 ENSEMBL gene 207687960 207688059 100.0 + 0 ENSG00000200764.1 misc_RNA RF00019 3 +38706 chr2 HAVANA gene 207753872 207754435 564.0 - 0 ENSG00000272851.1 antisense AC096772.1 2 OTTHUMG00000186306.1 +38707 chr2 ENSEMBL gene 207754807 207754881 75.0 + 0 ENSG00000284079.1 miRNA MIR4775 3 +38708 chr2 HAVANA gene 207711540 207761839 4707.0 + 0 ENSG00000163249.11 protein_coding CCNYL1 1 OTTHUMG00000132946.3 ncRNA_host +38709 chr2 HAVANA gene 207762586 207769563 6708.0 - 0 ENSG00000163251.3 protein_coding FZD5 2 OTTHUMG00000154790.1 +38710 chr2 HAVANA gene 207868582 207869915 469.0 - 0 ENSG00000225111.1 sense_intronic AC083900.1 1 OTTHUMG00000154794.1 overlapping_locus +38711 chr2 ENSEMBL gene 208019638 208019741 104.0 - 0 ENSG00000212246.1 snRNA RNU6-360P 3 +38712 chr2 HAVANA gene 207821288 208025560 11671.0 - 0 ENSG00000178385.14 protein_coding PLEKHM3 2 OTTHUMG00000154781.2 ncRNA_host,overlapping_locus +38713 chr2 HAVANA gene 208031383 208031953 571.0 - 0 ENSG00000185078.3 processed_pseudogene AC093698.1 1 OTTHUMG00000154785.1 pseudo_consens +38714 chr2 ENSEMBL gene 208054161 208054258 98.0 - 0 ENSG00000251941.1 rRNA_pseudogene RNA5SP116 3 +38715 chr2 HAVANA gene 208057248 208057745 498.0 - 0 ENSG00000224839.1 processed_pseudogene RPL12P17 1 OTTHUMG00000154788.1 pseudo_consens +38716 chr2 HAVANA gene 208108233 208112511 528.0 - 0 ENSG00000229150.1 transcribed_unprocessed_pseudogene CRYGEP 2 OTTHUMG00000154792.1 +38717 chr2 HAVANA gene 208121607 208124501 619.0 - 0 ENSG00000118231.4 protein_coding CRYGD 2 OTTHUMG00000132944.2 +38718 chr2 HAVANA gene 208128137 208129830 629.0 - 0 ENSG00000163254.4 protein_coding CRYGC 2 OTTHUMG00000132942.1 +38719 chr2 HAVANA gene 208135394 208137697 1078.0 - 0 ENSG00000224529.1 processed_pseudogene AC093698.2 1 OTTHUMG00000154791.1 pseudo_consens +38720 chr2 HAVANA gene 208142573 208146168 641.0 - 0 ENSG00000182187.3 protein_coding CRYGB 2 OTTHUMG00000132941.2 +38721 chr2 HAVANA gene 208160740 208163576 609.0 - 0 ENSG00000168582.4 protein_coding CRYGA 2 OTTHUMG00000154796.1 +38722 chr2 HAVANA gene 208165343 208190073 1435.0 - 0 ENSG00000188674.10 protein_coding C2orf80 1 OTTHUMG00000154751.5 +38723 chr2 HAVANA gene 208208135 208208984 850.0 + 0 ENSG00000233869.1 processed_pseudogene RPSAP27 1 OTTHUMG00000154639.1 pseudo_consens +38724 chr2 HAVANA gene 208214724 208222625 503.0 - 0 ENSG00000228111.1 processed_pseudogene TPT1P2 1 OTTHUMG00000154803.1 pseudo_consens +38725 chr2 HAVANA gene 208255247 208256181 655.0 + 0 ENSG00000231908.1 antisense IDH1-AS1 1 OTTHUMG00000154707.1 +38726 chr2 HAVANA gene 208236227 208266074 4721.0 - 0 ENSG00000138413.13 protein_coding IDH1 2 OTTHUMG00000132943.14 +38727 chr2 HAVANA gene 208269343 208269957 615.0 - 0 ENSG00000228380.1 processed_pseudogene MYL6BP1 1 OTTHUMG00000154704.1 pseudo_consens +38728 chr2 HAVANA gene 208266267 208358751 10832.0 + 0 ENSG00000115020.16 protein_coding PIKFYVE 1 OTTHUMG00000132945.6 +38729 chr2 HAVANA gene 208360631 208361369 739.0 - 0 ENSG00000213081.3 processed_pseudogene AC012362.1 1 OTTHUMG00000154662.1 pseudo_consens +38730 chr2 HAVANA gene 208466238 208466626 389.0 - 0 ENSG00000227430.1 processed_pseudogene AC019185.1 1 OTTHUMG00000154661.1 pseudo_consens +38731 chr2 HAVANA gene 208516908 208517230 323.0 + 0 ENSG00000232409.1 processed_pseudogene AC019185.3 2 OTTHUMG00000154663.1 overlapping_locus +38732 chr2 HAVANA gene 208469850 208540413 520.0 + 0 ENSG00000231896.1 sense_intronic AC019185.2 2 OTTHUMG00000155504.1 overlapping_locus +38733 chr2 HAVANA gene 208359714 208854503 4390.0 + 0 ENSG00000144407.9 protein_coding PTH2R 2 OTTHUMG00000132960.7 overlapping_locus +38734 chr2 ENSEMBL gene 208920547 208920664 118.0 - 0 ENSG00000202164.1 rRNA_pseudogene RNA5SP117 3 +38735 chr2 HAVANA gene 209072597 209074148 1552.0 - 0 ENSG00000235864.1 processed_pseudogene HSPA8P6 1 OTTHUMG00000154705.1 pseudo_consens +38736 chr2 HAVANA gene 209145241 209147687 633.0 + 0 ENSG00000232799.1 unprocessed_pseudogene CRYGFP 2 OTTHUMG00000154708.1 +38737 chr2 HAVANA gene 209178966 209181123 2158.0 + 0 ENSG00000229670.2 unprocessed_pseudogene PKP4P1 1 OTTHUMG00000155516.1 pseudo_consens,overlapping_locus +38738 chr2 HAVANA gene 209178804 209182018 327.0 + 0 ENSG00000240286.1 processed_pseudogene MEAF6P1 1 OTTHUMG00000154706.1 pseudo_consens,overlapping_locus +38739 chr2 ENSEMBL gene 209721913 209722021 109.0 - 0 ENSG00000222317.1 rRNA_pseudogene RNA5SP118 3 +38740 chr2 HAVANA gene 209424058 209734118 11559.0 + 0 ENSG00000078018.19 protein_coding MAP2 1 OTTHUMG00000132962.6 +38741 chr2 HAVANA gene 209808804 209809580 777.0 + 0 ENSG00000237194.1 processed_pseudogene SNAI1P1 2 OTTHUMG00000154657.1 overlapping_locus +38742 chr2 HAVANA gene 209771993 209999300 19258.0 + 0 ENSG00000144406.18 protein_coding UNC80 2 OTTHUMG00000132963.10 overlapping_locus +38743 chr2 HAVANA gene 210002565 210022259 3522.0 + 0 ENSG00000197713.14 protein_coding RPE 1 OTTHUMG00000154690.6 +38744 chr2 HAVANA gene 210028417 210029156 740.0 + 0 ENSG00000272807.1 antisense AC007038.2 2 OTTHUMG00000186312.1 +38745 chr2 HAVANA gene 210030733 210064356 2199.0 + 0 ENSG00000229127.1 antisense AC007038.1 1 OTTHUMG00000154698.1 +38746 chr2 HAVANA gene 210088226 210089064 839.0 + 0 ENSG00000231063.1 processed_pseudogene AC006994.1 1 OTTHUMG00000154718.2 pseudo_consens +38747 chr2 HAVANA gene 210021423 210171383 8491.0 - 0 ENSG00000144445.16 protein_coding KANSL1L 1 OTTHUMG00000154697.5 +38748 chr2 HAVANA gene 210187939 210225491 4383.0 - 0 ENSG00000115361.7 protein_coding ACADL 2 OTTHUMG00000132989.3 +38749 chr2 HAVANA gene 210171518 210233976 4461.0 + 0 ENSG00000279317.2 bidirectional_promoter_lncRNA AC006994.2 2 OTTHUMG00000154719.2 +38750 chr2 ENSEMBL gene 210265963 210266074 112.0 + 0 ENSG00000199203.1 misc_RNA RF00019 3 +38751 chr2 HAVANA gene 210290150 210315190 1342.0 - 0 ENSG00000168530.15 protein_coding MYL1 2 OTTHUMG00000132992.2 +38752 chr2 HAVANA gene 210324759 210469246 1667.0 + 0 ENSG00000234281.5 antisense LANCL1-AS1 1 OTTHUMG00000154735.1 +38753 chr2 HAVANA gene 210431249 210477652 5254.0 - 0 ENSG00000115365.11 protein_coding LANCL1 1 OTTHUMG00000132991.6 +38754 chr2 HAVANA gene 210617571 210619876 2306.0 + 0 ENSG00000280837.1 sense_intronic CPS1-IT1 2 OTTHUMG00000189581.1 +38755 chr2 HAVANA gene 210477682 210679107 10444.0 + 0 ENSG00000021826.15 protein_coding CPS1 2 OTTHUMG00000132994.11 +38756 chr2 HAVANA gene 211104934 211105732 799.0 + 0 ENSG00000271074.1 processed_pseudogene AC012491.1 1 OTTHUMG00000184258.1 pseudo_consens +38757 chr2 HAVANA gene 211298941 211299189 249.0 - 0 ENSG00000231017.1 processed_pseudogene AC013404.1 1 OTTHUMG00000154747.1 pseudo_consens +38758 chr2 ENSEMBL gene 211535653 211535769 117.0 + 0 ENSG00000199585.1 rRNA_pseudogene RNA5SP119 3 +38759 chr2 HAVANA gene 211777206 211777856 651.0 + 0 ENSG00000232631.1 processed_pseudogene MTND2P23 2 OTTHUMG00000154766.1 +38760 chr2 HAVANA gene 211778273 211779763 1491.0 + 0 ENSG00000236007.1 processed_pseudogene MTCO1P46 2 OTTHUMG00000154767.3 +38761 chr2 ENSEMBL gene 212426263 212426360 98.0 - 0 ENSG00000221782.1 miRNA MIR548F2 3 +38762 chr2 HAVANA gene 211375717 212538841 13015.0 - 0 ENSG00000178568.14 protein_coding ERBB4 2 OTTHUMG00000133012.5 ncRNA_host +38763 chr2 HAVANA gene 212795331 212819264 1124.0 + 0 ENSG00000234308.2 lincRNA LINC01878 2 OTTHUMG00000154769.2 +38764 chr2 HAVANA gene 212832161 212832945 785.0 + 0 ENSG00000231254.2 processed_pseudogene PCED1CP 1 OTTHUMG00000154768.1 pseudo_consens +38765 chr2 HAVANA gene 212911003 212919809 596.0 + 0 ENSG00000223373.1 lincRNA AC108066.1 1 OTTHUMG00000154822.1 +38766 chr2 ENSEMBL gene 212926257 212926336 80.0 + 0 ENSG00000266354.1 miRNA MIR4776-1 3 +38767 chr2 ENSEMBL gene 212926257 212926336 80.0 - 0 ENSG00000283637.1 miRNA MIR4776-2 3 +38768 chr2 HAVANA gene 212581357 213021545 433.0 - 0 ENSG00000273118.1 sense_overlapping AC093865.1 2 OTTHUMG00000154820.1 ncRNA_host,overlapping_locus +38769 chr2 HAVANA gene 212999691 213152427 12240.0 - 0 ENSG00000030419.16 protein_coding IKZF2 2 OTTHUMG00000133005.7 overlapping_locus +38770 chr2 HAVANA gene 213152970 213153659 690.0 + 0 ENSG00000270659.1 lincRNA AC079610.2 2 OTTHUMG00000185233.1 +38771 chr2 HAVANA gene 213155806 213167712 717.0 - 0 ENSG00000236193.3 lincRNA LINC01953 2 OTTHUMG00000186255.1 +38772 chr2 HAVANA gene 213266995 213276152 147.0 - 0 ENSG00000272519.1 lincRNA AC079610.3 2 OTTHUMG00000185531.1 +38773 chr2 HAVANA gene 213276552 213284205 1727.0 - 0 ENSG00000196096.3 lincRNA AC079610.1 2 OTTHUMG00000154847.1 +38774 chr2 ENSEMBL gene 213758067 213758159 93.0 + 0 ENSG00000265734.1 miRNA MIR4438 3 +38775 chr2 HAVANA gene 214280638 214281452 815.0 - 0 ENSG00000213917.2 processed_pseudogene RPL5P8 1 OTTHUMG00000154848.1 pseudo_consens,overlapping_locus +38776 chr2 HAVANA gene 213284379 214410501 8257.0 + 0 ENSG00000144451.18 protein_coding SPAG16 2 OTTHUMG00000133015.8 ncRNA_host +38777 chr2 HAVANA gene 214510196 214536890 467.0 + 0 ENSG00000224257.1 sense_intronic VWC2L-IT1 2 OTTHUMG00000154819.1 overlapping_locus +38778 chr2 HAVANA gene 214411065 214578959 5230.0 + 0 ENSG00000174453.9 protein_coding VWC2L 2 OTTHUMG00000154811.2 overlapping_locus +38779 chr2 HAVANA gene 214250040 214684246 727.0 - 0 ENSG00000197585.9 antisense AC068051.1 2 OTTHUMG00000154823.2 overlapping_locus +38780 chr2 HAVANA gene 214697727 214698059 333.0 + 0 ENSG00000177261.8 processed_pseudogene ENSAP3 1 OTTHUMG00000154772.2 pseudo_consens +38781 chr2 HAVANA gene 214725646 214809711 6067.0 - 0 ENSG00000138376.10 protein_coding BARD1 2 OTTHUMG00000133016.4 +38782 chr2 ENSEMBL gene 214846947 214847081 135.0 + 0 ENSG00000207274.1 snoRNA SNORA70I 3 +38783 chr2 HAVANA gene 214847128 214847445 318.0 + 0 ENSG00000230076.1 processed_pseudogene RPL10P6 2 OTTHUMG00000154802.1 overlapping_locus +38784 chr2 HAVANA gene 214810229 214963274 2108.0 + 0 ENSG00000229267.2 antisense AC016708.1 2 OTTHUMG00000154799.2 ncRNA_host,overlapping_locus +38785 chr2 HAVANA gene 215004782 215085488 3813.0 + 0 ENSG00000227769.7 antisense AC072062.1 2 OTTHUMG00000154798.5 +38786 chr2 HAVANA gene 214931542 215138428 9416.0 - 0 ENSG00000144452.14 protein_coding ABCA12 2 OTTHUMG00000154801.3 +38787 chr2 HAVANA gene 215274992 215277947 404.0 + 0 ENSG00000237571.1 lincRNA AC073284.1 2 OTTHUMG00000154818.1 +38788 chr2 HAVANA gene 215311817 215349773 3928.0 + 0 ENSG00000138363.14 protein_coding ATIC 2 OTTHUMG00000133023.7 +38789 chr2 HAVANA gene 215360440 215436172 17315.0 - 0 ENSG00000115414.18 protein_coding FN1 2 OTTHUMG00000133054.6 +38790 chr2 HAVANA gene 215436253 215436992 131.0 + 0 ENSG00000230695.1 antisense AC012462.3 2 OTTHUMG00000154840.1 +38791 chr2 HAVANA gene 215453707 215463871 825.0 + 0 ENSG00000225166.1 lincRNA AC012462.1 2 OTTHUMG00000154835.2 +38792 chr2 HAVANA gene 215476667 215480248 391.0 + 0 ENSG00000228618.1 lincRNA AC012462.2 2 OTTHUMG00000155685.1 +38793 chr2 HAVANA gene 215530447 215545526 503.0 - 0 ENSG00000234938.2 lincRNA AC012668.2 2 OTTHUMG00000154836.2 +38794 chr2 HAVANA gene 215579407 215582635 228.0 - 0 ENSG00000227981.2 lincRNA AC012668.1 2 OTTHUMG00000154832.2 +38795 chr2 HAVANA gene 215533133 215713895 2028.0 + 0 ENSG00000237525.6 lincRNA AC012668.3 2 OTTHUMG00000154833.2 +38796 chr2 HAVANA gene 215718043 215719424 648.0 + 0 ENSG00000230838.1 lincRNA LINC01614 2 OTTHUMG00000154838.1 +38797 chr2 HAVANA gene 215804731 215804981 251.0 - 0 ENSG00000216721.3 processed_pseudogene AC093850.1 1 OTTHUMG00000154839.1 pseudo_consens,overlapping_locus +38798 chr2 HAVANA gene 215611563 215843722 5628.0 - 0 ENSG00000235770.5 lincRNA LINC00607 1 OTTHUMG00000154834.1 overlapping_locus +38799 chr2 HAVANA gene 215869923 215870518 478.0 + 0 ENSG00000227824.1 lincRNA AC122136.1 2 OTTHUMG00000154837.1 +38800 chr2 HAVANA gene 215939308 215941719 379.0 - 0 ENSG00000226276.1 lincRNA AC093382.1 2 OTTHUMG00000154827.1 +38801 chr2 HAVANA gene 215942805 216034096 3056.0 - 0 ENSG00000118242.15 protein_coding MREG 2 OTTHUMG00000154828.2 overlapping_locus +38802 chr2 HAVANA gene 215996329 216082955 3182.0 - 0 ENSG00000115425.13 protein_coding PECR 1 OTTHUMG00000154825.2 overlapping_locus +38803 chr2 HAVANA gene 216081866 216102783 3628.0 + 0 ENSG00000163449.10 protein_coding TMEM169 2 OTTHUMG00000133053.3 +38804 chr2 HAVANA gene 216156342 216156811 470.0 - 0 ENSG00000232970.1 processed_pseudogene POLHP1 1 OTTHUMG00000154829.1 pseudo_consens +38805 chr2 HAVANA gene 216174896 216176032 1137.0 - 0 ENSG00000236478.2 processed_pseudogene AC012513.2 1 OTTHUMG00000154826.2 pseudo_consens +38806 chr2 HAVANA gene 216107464 216206303 5463.0 + 0 ENSG00000079246.15 protein_coding XRCC5 2 OTTHUMG00000133059.5 +38807 chr2 HAVANA gene 216211404 216213519 2116.0 + 0 ENSG00000279348.1 TEC AC012513.3 2 OTTHUMG00000176288.1 +38808 chr2 HAVANA gene 216217045 216220192 3148.0 + 0 ENSG00000260804.3 lincRNA LINC01963 2 OTTHUMG00000176293.1 +38809 chr2 HAVANA gene 216259595 216266130 784.0 + 0 ENSG00000231092.1 antisense AC012513.1 2 OTTHUMG00000154842.1 +38810 chr2 HAVANA gene 216303325 216321737 575.0 + 0 ENSG00000233581.1 antisense AC069155.1 2 OTTHUMG00000154841.1 +38811 chr2 ENSEMBL gene 216351403 216351504 102.0 + 0 ENSG00000207303.1 misc_RNA RF00019 3 +38812 chr2 HAVANA gene 216257865 216372027 4447.0 - 0 ENSG00000144583.4 protein_coding MARCH4 2 OTTHUMG00000154824.2 +38813 chr2 HAVANA gene 216385288 216412696 666.0 - 0 ENSG00000235042.1 antisense AC098820.2 2 OTTHUMG00000154843.1 +38814 chr2 HAVANA gene 216412414 216483053 5092.0 + 0 ENSG00000138375.12 protein_coding SMARCAL1 1 OTTHUMG00000133055.3 +38815 chr2 HAVANA gene 216483032 216487196 976.0 - 0 ENSG00000241520.1 antisense AC098820.3 1 OTTHUMG00000154849.1 overlapping_locus +38816 chr2 HAVANA gene 216479030 216498761 1435.0 - 0 ENSG00000232485.2 processed_transcript AC098820.1 1 OTTHUMG00000154850.1 overlapping_locus +38817 chr2 HAVANA gene 216498189 216579180 6841.0 + 0 ENSG00000197756.9 protein_coding RPL37A 2 OTTHUMG00000133052.5 +38818 chr2 HAVANA gene 216590426 216606938 1184.0 - 0 ENSG00000224391.1 antisense LINC01280 2 OTTHUMG00000155340.1 +38819 chr2 HAVANA gene 216610342 216610959 618.0 - 0 ENSG00000235444.2 processed_pseudogene PSMB3P2 1 OTTHUMG00000155343.1 pseudo_consens +38820 chr2 HAVANA gene 216604771 216611202 654.0 + 0 ENSG00000225794.1 lincRNA AC073321.1 1 OTTHUMG00000155344.3 +38821 chr2 HAVANA gene 216632828 216664436 4767.0 + 0 ENSG00000115457.9 protein_coding IGFBP2 1 OTTHUMG00000155341.2 +38822 chr2 HAVANA gene 216672105 216695525 6442.0 - 0 ENSG00000115461.4 protein_coding IGFBP5 2 OTTHUMG00000133058.3 +38823 chr2 HAVANA gene 216785774 216786144 371.0 - 0 ENSG00000237930.1 processed_pseudogene AC007563.3 1 OTTHUMG00000155308.1 pseudo_consens +38824 chr2 ENSEMBL gene 216793489 216793600 112.0 - 0 ENSG00000222832.1 rRNA_pseudogene RNA5SP120 3 +38825 chr2 HAVANA gene 216799608 216805335 689.0 + 0 ENSG00000229352.1 lincRNA AC007563.1 1 OTTHUMG00000155311.1 overlapping_locus +38826 chr2 HAVANA gene 216805737 216806129 393.0 - 0 ENSG00000234588.1 processed_pseudogene FABP5P14 1 OTTHUMG00000155314.1 pseudo_consens +38827 chr2 HAVANA gene 216854389 216855132 583.0 - 0 ENSG00000231597.1 antisense AC007557.2 1 OTTHUMG00000155312.1 +38828 chr2 HAVANA gene 216859458 216860064 407.0 - 0 ENSG00000118245.2 protein_coding TNP1 2 OTTHUMG00000133057.1 +38829 chr2 HAVANA gene 216866332 216867813 430.0 - 0 ENSG00000237479.1 antisense AC007557.4 1 OTTHUMG00000155316.1 +38830 chr2 HAVANA gene 216868012 216869156 541.0 + 0 ENSG00000227021.1 lincRNA AC007557.1 2 OTTHUMG00000155315.1 overlapping_locus +38831 chr2 HAVANA gene 216870772 216871639 393.0 + 0 ENSG00000223874.1 lincRNA LINC01921 1 OTTHUMG00000155310.1 overlapping_locus +38832 chr2 HAVANA gene 216870441 216873932 3135.0 - 0 ENSG00000236295.1 lincRNA AC007557.3 2 OTTHUMG00000155313.1 +38833 chr2 HAVANA gene 216694464 216994079 904.0 + 0 ENSG00000236886.2 antisense AC007563.2 2 OTTHUMG00000155309.3 overlapping_locus +38834 chr2 HAVANA gene 216995906 216996490 585.0 + 0 ENSG00000259855.1 lincRNA AC007749.1 2 OTTHUMG00000176299.1 +38835 chr2 ENSEMBL gene 217251556 217251875 320.0 + 0 ENSG00000251982.1 misc_RNA RN7SKP43 3 +38836 chr2 ENSEMBL gene 217283370 217283523 154.0 + 0 ENSG00000278004.1 misc_RNA RF01983 3 +38837 chr2 HAVANA gene 217282739 217336120 557.0 + 0 ENSG00000233143.1 lincRNA DIRC3-AS1 2 OTTHUMG00000155286.1 ncRNA_host +38838 chr2 HAVANA gene 217693895 217696763 2869.0 + 0 ENSG00000224414.1 processed_pseudogene AC010886.1 1 OTTHUMG00000155288.1 pseudo_consens +38839 chr2 HAVANA gene 217284019 217756593 4665.0 - 0 ENSG00000231672.6 lincRNA DIRC3 1 OTTHUMG00000155287.2 +38840 chr2 HAVANA gene 217760547 217761291 745.0 - 0 ENSG00000231035.1 processed_pseudogene RPL7L1P9 1 OTTHUMG00000155261.1 pseudo_consens +38841 chr2 ENSEMBL gene 217900513 217900628 116.0 - 0 ENSG00000275458.1 miRNA MIR6809 3 +38842 chr2 HAVANA gene 217978707 217992615 568.0 + 0 ENSG00000223923.1 antisense AC010136.1 1 OTTHUMG00000155260.1 +38843 chr2 HAVANA gene 217799588 218033982 16281.0 - 0 ENSG00000079308.18 protein_coding TNS1 1 OTTHUMG00000133056.9 ncRNA_host +38844 chr2 HAVANA gene 218059155 218065729 2503.0 - 0 ENSG00000229754.1 transcribed_unprocessed_pseudogene CXCR2P1 2 OTTHUMG00000155244.1 +38845 chr2 HAVANA gene 218034960 218090581 4357.0 + 0 ENSG00000188282.12 protein_coding RUFY4 1 OTTHUMG00000155235.3 +38846 chr2 HAVANA gene 218125289 218137253 3231.0 + 0 ENSG00000180871.7 protein_coding CXCR2 2 OTTHUMG00000133107.3 +38847 chr2 HAVANA gene 218162845 218166995 2488.0 - 0 ENSG00000163464.7 protein_coding CXCR1 2 OTTHUMG00000133108.2 +38848 chr2 HAVANA gene 218200434 218201388 646.0 + 0 ENSG00000224159.1 processed_pseudogene HMGB1P9 1 OTTHUMG00000155227.1 pseudo_consens +38849 chr2 HAVANA gene 218217094 218254356 6562.0 + 0 ENSG00000163466.15 protein_coding ARPC2 1 OTTHUMG00000133618.4 +38850 chr2 HAVANA gene 218255319 218257366 2048.0 + 0 ENSG00000261338.2 sense_overlapping AC021016.2 2 OTTHUMG00000176328.2 +38851 chr2 HAVANA gene 218259496 218263859 2692.0 + 0 ENSG00000179921.14 protein_coding GPBAR1 2 OTTHUMG00000155203.3 +38852 chr2 HAVANA gene 218264123 218270257 3140.0 - 0 ENSG00000127837.9 protein_coding AAMP 1 OTTHUMG00000155202.3 +38853 chr2 ENSEMBL gene 218280125 218280188 64.0 - 0 ENSG00000284173.1 miRNA MIR6513 3 +38854 chr2 HAVANA gene 218274192 218292586 5098.0 - 0 ENSG00000135926.14 protein_coding TMBIM1 2 OTTHUMG00000133105.10 ncRNA_host +38855 chr2 ENSEMBL gene 218341911 218341980 70.0 + 0 ENSG00000278524.1 miRNA MIR6810 3 +38856 chr2 HAVANA gene 218270392 218346793 5184.0 + 0 ENSG00000127838.13 protein_coding PNKD 2 OTTHUMG00000133110.3 ncRNA_host +38857 chr2 HAVANA gene 218354075 218354572 498.0 + 0 ENSG00000230580.1 processed_pseudogene AC021016.1 1 OTTHUMG00000155144.1 pseudo_consens +38858 chr2 HAVANA gene 218326889 218357966 535.0 - 0 ENSG00000237281.1 antisense CATIP-AS2 2 OTTHUMG00000155145.1 +38859 chr2 HAVANA gene 218366665 218367835 775.0 - 0 ENSG00000225062.1 processed_transcript CATIP-AS1 1 OTTHUMG00000155067.1 +38860 chr2 HAVANA gene 218356856 218368099 3821.0 + 0 ENSG00000158428.3 protein_coding CATIP 2 OTTHUMG00000133106.2 +38861 chr2 HAVANA gene 218382029 218396894 8676.0 + 0 ENSG00000018280.16 protein_coding SLC11A1 2 OTTHUMG00000086747.3 +38862 chr2 HAVANA gene 218398743 218399219 477.0 - 0 ENSG00000273361.1 antisense AC021016.3 2 OTTHUMG00000186313.1 +38863 chr2 ENSEMBL gene 218402646 218402722 77.0 + 0 ENSG00000199121.4 miRNA MIR26B 3 +38864 chr2 HAVANA gene 218398256 218405941 4727.0 + 0 ENSG00000144579.7 protein_coding CTDSP1 1 OTTHUMG00000133109.3 ncRNA_host +38865 chr2 HAVANA gene 218419092 218453295 6920.0 + 0 ENSG00000127831.10 protein_coding VIL1 1 OTTHUMG00000133112.5 +38866 chr2 ENSEMBL gene 218500729 218501037 309.0 - 0 ENSG00000222714.1 misc_RNA RN7SKP38 3 +38867 chr2 HAVANA gene 218450251 218568361 9290.0 - 0 ENSG00000135913.10 protein_coding USP37 1 OTTHUMG00000133113.4 ncRNA_host +38868 chr2 ENSEMBL gene 218589214 218589320 107.0 - 0 ENSG00000207393.1 snRNA RNU6-136P 3 +38869 chr2 HAVANA gene 218568580 218597080 5289.0 + 0 ENSG00000144580.13 protein_coding CNOT9 1 OTTHUMG00000154750.2 +38870 chr2 HAVANA gene 218633256 218634014 759.0 - 0 ENSG00000273466.1 antisense AC012510.1 2 OTTHUMG00000186314.1 +38871 chr2 HAVANA gene 218607765 218637184 5867.0 + 0 ENSG00000115556.13 protein_coding PLCD4 1 OTTHUMG00000154743.3 +38872 chr2 HAVANA gene 218637916 218659655 6994.0 - 0 ENSG00000115568.15 protein_coding ZNF142 1 OTTHUMG00000154736.2 +38873 chr2 HAVANA gene 218658764 218663443 3379.0 + 0 ENSG00000074582.13 protein_coding BCS1L 1 OTTHUMG00000133114.4 +38874 chr2 HAVANA gene 218663864 218672411 2323.0 - 0 ENSG00000163481.7 protein_coding RNF25 2 OTTHUMG00000133077.2 +38875 chr2 HAVANA gene 218672026 218702716 6458.0 + 0 ENSG00000163482.11 protein_coding STK36 1 OTTHUMG00000133079.3 +38876 chr2 HAVANA gene 218710845 218755416 7685.0 + 0 ENSG00000135912.10 protein_coding TTLL4 2 OTTHUMG00000133081.4 +38877 chr2 HAVANA gene 218781749 218815293 2983.0 + 0 ENSG00000135929.8 protein_coding CYP27A1 1 OTTHUMG00000048238.6 +38878 chr2 HAVANA gene 218818690 218819144 455.0 + 0 ENSG00000272555.1 lincRNA AC009974.1 2 OTTHUMG00000186315.1 +38879 chr2 ENSEMBL gene 218823090 218823154 65.0 + 0 ENSG00000283639.1 miRNA MIR9500 3 +38880 chr2 HAVANA gene 218822383 218832086 3334.0 - 0 ENSG00000115592.11 protein_coding PRKAG3 2 OTTHUMG00000133078.4 +38881 chr2 HAVANA gene 218841599 218842065 467.0 + 0 ENSG00000232625.1 processed_pseudogene RPL23AP31 1 OTTHUMG00000154686.1 pseudo_consens +38882 chr2 HAVANA gene 218859821 218874233 1703.0 + 0 ENSG00000115596.3 protein_coding WNT6 2 OTTHUMG00000133082.2 +38883 chr2 HAVANA gene 218880363 218899581 3412.0 + 0 ENSG00000135925.8 protein_coding WNT10A 1 OTTHUMG00000133085.3 +38884 chr2 ENSEMBL gene 218916184 218916287 104.0 - 0 ENSG00000200029.1 snRNA RNU6-642P 3 +38885 chr2 HAVANA gene 218900811 218930636 1011.0 - 0 ENSG00000228135.1 antisense LINC01494 2 OTTHUMG00000154664.1 ncRNA_host +38886 chr2 HAVANA gene 218953401 218954050 650.0 - 0 ENSG00000224928.2 processed_pseudogene KRT8P30 1 OTTHUMG00000154667.1 pseudo_consens,overlapping_locus +38887 chr2 HAVANA gene 218944629 218961903 553.0 - 0 ENSG00000235024.1 antisense AC097468.2 2 OTTHUMG00000154666.1 overlapping_locus +38888 chr2 HAVANA gene 218959655 218962162 2508.0 + 0 ENSG00000171450.5 protein_coding CDK5R2 2 OTTHUMG00000133083.2 +38889 chr2 HAVANA gene 218981087 218985657 2049.0 - 0 ENSG00000163497.2 protein_coding FEV 2 OTTHUMG00000133080.2 +38890 chr2 HAVANA gene 218975393 218989940 4023.0 + 0 ENSG00000236445.4 antisense LINC00608 1 OTTHUMG00000154665.5 +38891 chr2 HAVANA gene 218990189 218993421 1454.0 - 0 ENSG00000163499.11 protein_coding CRYBA2 2 OTTHUMG00000133084.3 +38892 chr2 ENSEMBL gene 219001645 219001708 64.0 - 0 ENSG00000198973.4 miRNA MIR375 3 +38893 chr2 HAVANA gene 219002215 219015721 1992.0 + 0 ENSG00000224090.1 antisense AC097468.1 1 OTTHUMG00000154630.1 +38894 chr2 HAVANA gene 219002846 219041527 10519.0 - 0 ENSG00000181378.13 protein_coding CFAP65 2 OTTHUMG00000133013.8 +38895 chr2 ENSEMBL gene 219058688 219058750 63.0 - 0 ENSG00000264755.1 miRNA MIR3131 3 +38896 chr2 HAVANA gene 219054420 219060467 2023.0 - 0 ENSG00000163501.6 protein_coding IHH 2 OTTHUMG00000154631.2 ncRNA_host +38897 chr2 HAVANA gene 219069354 219069809 456.0 - 0 ENSG00000272644.1 lincRNA AC097468.3 2 OTTHUMG00000186316.1 +38898 chr2 ENSEMBL gene 219102434 219102719 286.0 + 0 ENSG00000240317.3 misc_RNA RN7SL764P 3 +38899 chr2 HAVANA gene 219075317 219160865 3109.0 - 0 ENSG00000187736.12 protein_coding NHEJ1 2 OTTHUMG00000133127.3 overlapping_locus +38900 chr2 HAVANA gene 219161465 219170095 3601.0 - 0 ENSG00000213901.10 protein_coding SLC23A3 1 OTTHUMG00000154616.9 overlapping_locus +38901 chr2 HAVANA gene 219075329 219170827 4650.0 - 0 ENSG00000280537.2 protein_coding AC068946.1 2 OTTHUMG00000189759.1 overlapping_locus +38902 chr2 HAVANA gene 219171897 219178106 2760.0 - 0 ENSG00000115649.15 protein_coding CNPPD1 2 OTTHUMG00000133132.3 +38903 chr2 HAVANA gene 219176225 219185479 5689.0 + 0 ENSG00000144567.10 protein_coding RETREG2 1 OTTHUMG00000154577.4 +38904 chr2 HAVANA gene 219195237 219209651 3396.0 + 0 ENSG00000158552.12 protein_coding ZFAND2B 2 OTTHUMG00000133135.16 +38905 chr2 HAVANA gene 219209766 219219017 5234.0 - 0 ENSG00000115657.13 protein_coding ABCB6 2 OTTHUMG00000133131.6 overlapping_locus +38906 chr2 HAVANA gene 219209772 219222738 5245.0 - 0 ENSG00000284820.1 protein_coding AC068946.2 2 OTTHUMG00000192415.1 overlapping_locus +38907 chr2 HAVANA gene 219219380 219229717 4724.0 - 0 ENSG00000198925.11 protein_coding ATG9A 1 OTTHUMG00000154557.19 overlapping_locus +38908 chr2 HAVANA gene 219229757 219236669 6119.0 + 0 ENSG00000163516.13 protein_coding ANKZF1 1 OTTHUMG00000154533.3 +38909 chr2 HAVANA gene 219236606 219245478 3411.0 - 0 ENSG00000163521.15 protein_coding GLB1L 2 OTTHUMG00000133133.4 +38910 chr2 HAVANA gene 219245455 219250337 4368.0 + 0 ENSG00000115661.13 protein_coding STK16 1 OTTHUMG00000154520.2 +38911 chr2 HAVANA gene 219253243 219272188 1678.0 + 0 ENSG00000243910.7 protein_coding TUBA4B 2 OTTHUMG00000154516.3 +38912 chr2 HAVANA gene 219249711 219278170 4079.0 - 0 ENSG00000127824.13 protein_coding TUBA4A 1 OTTHUMG00000133126.6 +38913 chr2 HAVANA gene 219279267 219286900 5886.0 + 0 ENSG00000135924.15 protein_coding DNAJB2 1 OTTHUMG00000133134.22 +38914 chr2 ENSEMBL gene 219294111 219294200 90.0 - 0 ENSG00000207647.1 miRNA MIR153-1 3 +38915 chr2 HAVANA gene 219299002 219304130 311.0 + 0 ENSG00000230432.1 antisense AC114803.1 2 OTTHUMG00000154505.1 +38916 chr2 HAVANA gene 219289623 219309648 8261.0 - 0 ENSG00000054356.13 protein_coding PTPRN 1 OTTHUMG00000133129.4 ncRNA_host +38917 chr2 HAVANA gene 219327409 219333177 1140.0 - 0 ENSG00000182698.11 protein_coding RESP18 2 OTTHUMG00000150223.1 +38918 chr2 HAVANA gene 219358870 219358983 114.0 - 0 ENSG00000232789.1 unprocessed_pseudogene AC053503.3 2 OTTHUMG00000058920.1 +38919 chr2 HAVANA gene 219373527 219400022 4753.0 - 0 ENSG00000123992.19 protein_coding DNPEP 1 OTTHUMG00000058919.7 +38920 chr2 HAVANA gene 219388496 219403633 1598.0 + 0 ENSG00000229525.1 antisense AC053503.2 1 OTTHUMG00000058921.1 +38921 chr2 HAVANA gene 219425071 219426184 224.0 - 0 ENSG00000234638.1 antisense AC053503.4 2 OTTHUMG00000058923.1 +38922 chr2 HAVANA gene 219418377 219426739 2464.0 + 0 ENSG00000175084.11 protein_coding DES 2 OTTHUMG00000058924.3 +38923 chr2 HAVANA gene 219427477 219429319 1843.0 + 0 ENSG00000280323.1 TEC AC053503.6 2 OTTHUMG00000150115.1 +38924 chr2 HAVANA gene 219497611 219498246 636.0 - 0 ENSG00000268603.1 antisense AC053503.5 2 OTTHUMG00000183007.1 overlapping_locus +38925 chr2 HAVANA gene 219434846 219498287 17910.0 + 0 ENSG00000072195.14 protein_coding SPEG 1 OTTHUMG00000058925.10 +38926 chr2 HAVANA gene 219498867 219506989 5332.0 + 0 ENSG00000144591.18 protein_coding GMPPA 2 OTTHUMG00000058922.23 +38927 chr2 HAVANA gene 219482073 219516877 519.0 - 0 ENSG00000227432.1 antisense AC053503.1 2 OTTHUMG00000133672.1 overlapping_locus +38928 chr2 HAVANA gene 219514170 219538772 5250.0 + 0 ENSG00000072182.12 protein_coding ASIC4 2 OTTHUMG00000058928.2 +38929 chr2 HAVANA gene 219538947 219543787 3354.0 - 0 ENSG00000123989.13 protein_coding CHPF 2 OTTHUMG00000058929.3 +38930 chr2 HAVANA gene 219547211 219547658 448.0 - 0 ENSG00000268896.1 antisense AC009955.3 2 OTTHUMG00000183008.1 +38931 chr2 ENSEMBL gene 219549073 219549147 75.0 - 0 ENSG00000265252.1 miRNA MIR3132 3 +38932 chr2 HAVANA gene 219543663 219550595 2578.0 + 0 ENSG00000188760.10 protein_coding TMEM198 1 OTTHUMG00000059156.3 +38933 chr2 HAVANA gene 219559083 219559626 544.0 + 0 ENSG00000269068.1 antisense AC009955.4 2 OTTHUMG00000183009.1 +38934 chr2 HAVANA gene 219550729 219571859 9611.0 - 0 ENSG00000124006.14 protein_coding OBSL1 2 OTTHUMG00000059157.12 +38935 chr2 HAVANA gene 219569162 219575713 1753.0 + 0 ENSG00000123999.4 protein_coding INHA 2 OTTHUMG00000059237.1 +38936 chr2 ENSEMBL gene 219590687 219590984 298.0 - 0 ENSG00000222678.1 misc_RNA RN7SKP213 3 +38937 chr2 HAVANA gene 219597860 219616451 5694.0 + 0 ENSG00000144589.21 protein_coding STK11IP 2 OTTHUMG00000059239.7 +38938 chr2 HAVANA gene 219625059 219626693 271.0 - 0 ENSG00000228973.1 antisense AC009955.1 2 OTTHUMG00000059236.2 +38939 chr2 HAVANA gene 219627327 219641980 5091.0 + 0 ENSG00000114923.16 protein_coding SLC4A3 1 OTTHUMG00000059238.20 +38940 chr2 HAVANA gene 219645090 219645631 542.0 + 0 ENSG00000267919.1 lincRNA AC009955.2 2 OTTHUMG00000183010.1 +38941 chr2 HAVANA gene 219684030 219684795 766.0 - 0 ENSG00000231802.1 processed_pseudogene AC009502.2 1 OTTHUMG00000059374.1 pseudo_consens +38942 chr2 HAVANA gene 219697799 219698214 416.0 + 0 ENSG00000223903.1 processed_pseudogene RPL23P4 1 OTTHUMG00000059375.1 pseudo_consens,overlapping_locus +38943 chr2 HAVANA gene 219685381 219737937 2951.0 + 0 ENSG00000227308.2 lincRNA AC009502.1 2 OTTHUMG00000150131.2 overlapping_locus +38944 chr2 HAVANA gene 219904051 219904889 613.0 - 0 ENSG00000228909.1 lincRNA LINC01803 2 OTTHUMG00000059377.2 +38945 chr2 ENSEMBL gene 219906502 219906565 64.0 - 0 ENSG00000266518.1 miRNA MIR4268 3 +38946 chr2 HAVANA gene 220048822 220049272 451.0 - 0 ENSG00000225911.1 processed_pseudogene AC009310.1 2 OTTHUMG00000153864.1 +38947 chr2 HAVANA gene 220127546 220212491 347.0 + 0 ENSG00000235337.1 lincRNA AC093083.1 2 OTTHUMG00000153854.1 overlapping_locus +38948 chr2 HAVANA gene 220105656 220450778 754.0 + 0 ENSG00000239498.1 lincRNA AC019211.1 2 OTTHUMG00000153855.1 overlapping_locus +38949 chr2 HAVANA gene 220450679 220704566 2062.0 + 0 ENSG00000236451.2 lincRNA AC067956.1 2 OTTHUMG00000153857.1 overlapping_locus +38950 chr2 HAVANA gene 220791078 220797893 512.0 + 0 ENSG00000224819.1 lincRNA AC093843.1 2 OTTHUMG00000153856.1 +38951 chr2 HAVANA gene 221162771 221163053 283.0 + 0 ENSG00000232089.1 processed_pseudogene AC011233.1 1 OTTHUMG00000153851.1 pseudo_consens +38952 chr2 HAVANA gene 221532668 221533008 341.0 + 0 ENSG00000226726.1 processed_pseudogene TMEM256P2 1 OTTHUMG00000154498.1 pseudo_consens +38953 chr2 HAVANA gene 221418027 221574202 7554.0 - 0 ENSG00000116106.11 protein_coding EPHA4 1 OTTHUMG00000133142.7 +38954 chr2 HAVANA gene 221572506 221574454 1949.0 + 0 ENSG00000272944.1 antisense AC079834.2 2 OTTHUMG00000186317.1 +38955 chr2 HAVANA gene 221592441 221592861 421.0 + 0 ENSG00000230406.2 processed_pseudogene AC079834.1 1 OTTHUMG00000153852.1 pseudo_consens +38956 chr2 HAVANA gene 221637543 221641813 261.0 + 0 ENSG00000234446.2 lincRNA AC068489.1 2 OTTHUMG00000154090.2 +38957 chr2 HAVANA gene 221944223 221944612 390.0 + 0 ENSG00000233868.1 processed_pseudogene AC009302.1 2 OTTHUMG00000153408.1 +38958 chr2 HAVANA gene 221961737 221963765 2029.0 + 0 ENSG00000226666.1 processed_pseudogene HSPA9P1 1 OTTHUMG00000153407.1 pseudo_consens +38959 chr2 HAVANA gene 222044525 222044994 470.0 - 0 ENSG00000226331.1 processed_pseudogene RPL23AP28 1 OTTHUMG00000153405.2 pseudo_consens +38960 chr2 HAVANA gene 222199888 222298996 4633.0 - 0 ENSG00000135903.19 protein_coding PAX3 1 OTTHUMG00000133157.9 +38961 chr2 HAVANA gene 222298147 222305217 1932.0 + 0 ENSG00000163081.3 protein_coding CCDC140 2 OTTHUMG00000133154.3 +38962 chr2 HAVANA gene 222317242 222318653 1412.0 - 0 ENSG00000267034.1 lincRNA AC010980.2 2 OTTHUMG00000180633.1 +38963 chr2 HAVANA gene 222318275 222352989 2567.0 + 0 ENSG00000237732.9 transcribed_unprocessed_pseudogene AC010980.1 1 OTTHUMG00000153406.3 +38964 chr2 ENSEMBL gene 222404985 222405095 111.0 + 0 ENSG00000200822.1 misc_RNA RF00019 3 +38965 chr2 HAVANA gene 222452400 222453126 727.0 - 0 ENSG00000228670.4 processed_pseudogene NANOGP2 1 OTTHUMG00000153388.4 pseudo_consens +38966 chr2 ENSEMBL gene 222498291 222498398 108.0 + 0 ENSG00000202016.1 snRNA RNU6-619P 3 +38967 chr2 HAVANA gene 222503883 222504843 961.0 - 0 ENSG00000234285.1 processed_pseudogene GAPDHP49 1 OTTHUMG00000153391.1 pseudo_consens +38968 chr2 HAVANA gene 222424517 222560948 3336.0 + 0 ENSG00000163082.9 protein_coding SGPP2 2 OTTHUMG00000133156.2 ncRNA_host +38969 chr2 HAVANA gene 222566899 222569719 2821.0 - 0 ENSG00000261428.2 antisense AC097461.1 2 OTTHUMG00000176330.3 +38970 chr2 HAVANA gene 222570536 222656337 3369.0 - 0 ENSG00000116120.9 protein_coding FARSB 2 OTTHUMG00000133155.2 +38971 chr2 HAVANA gene 222677677 222678289 613.0 - 0 ENSG00000233751.1 processed_pseudogene AC104772.2 1 OTTHUMG00000153393.1 pseudo_consens +38972 chr2 HAVANA gene 222698623 222699484 862.0 - 0 ENSG00000203531.3 processed_pseudogene AC104772.1 1 OTTHUMG00000153387.1 pseudo_consens +38973 chr2 HAVANA gene 222671786 222709930 1048.0 + 0 ENSG00000124003.12 protein_coding MOGAT1 2 OTTHUMG00000153394.3 +38974 chr2 HAVANA gene 222726457 222726834 378.0 + 0 ENSG00000235225.1 processed_pseudogene AC016712.1 1 OTTHUMG00000153392.1 pseudo_consens +38975 chr2 HAVANA gene 222904640 222905055 416.0 - 0 ENSG00000224121.1 processed_pseudogene ATG12P2 1 OTTHUMG00000153389.1 pseudo_consens +38976 chr2 HAVANA gene 222917387 222919363 537.0 - 0 ENSG00000234193.1 antisense AC013476.1 1 OTTHUMG00000153390.1 +38977 chr2 HAVANA gene 222860934 222944639 7240.0 + 0 ENSG00000123983.13 protein_coding ACSL3 1 OTTHUMG00000133160.5 +38978 chr2 HAVANA gene 222945930 222946388 459.0 - 0 ENSG00000278083.1 processed_pseudogene AC013476.2 2 OTTHUMG00000187703.1 +38979 chr2 HAVANA gene 223051814 223198399 4124.0 + 0 ENSG00000152049.6 protein_coding KCNE4 2 OTTHUMG00000133161.4 +38980 chr2 ENSEMBL gene 223248498 223248794 297.0 - 0 ENSG00000243125.3 misc_RNA RN7SL807P 3 +38981 chr2 HAVANA gene 223398267 223398546 280.0 - 0 ENSG00000233299.1 processed_pseudogene HIGD1AP4 1 OTTHUMG00000153379.1 pseudo_consens +38982 chr2 HAVANA gene 223498773 223504611 808.0 + 0 ENSG00000231189.1 lincRNA AC013448.1 2 OTTHUMG00000153378.1 +38983 chr2 HAVANA gene 223505476 223510933 787.0 + 0 ENSG00000235610.1 lincRNA AC013448.2 2 OTTHUMG00000153377.1 +38984 chr2 HAVANA gene 223596940 223602503 2719.0 - 0 ENSG00000171951.4 protein_coding SCG2 2 OTTHUMG00000133166.4 +38985 chr2 HAVANA gene 223704621 223705338 718.0 + 0 ENSG00000226539.1 processed_pseudogene AC012512.1 1 OTTHUMG00000153371.1 pseudo_consens +38986 chr2 HAVANA gene 223751686 223838027 4284.0 - 0 ENSG00000152056.16 protein_coding AP1S3 1 OTTHUMG00000133165.6 +38987 chr2 HAVANA gene 223855716 223945387 5516.0 - 0 ENSG00000085449.14 protein_coding WDFY1 1 OTTHUMG00000153370.3 +38988 chr2 HAVANA gene 223965701 223967706 429.0 - 0 ENSG00000228802.1 antisense AC073641.1 1 OTTHUMG00000153359.1 +38989 chr2 HAVANA gene 223957404 223967714 1748.0 + 0 ENSG00000135900.3 protein_coding MRPL44 2 OTTHUMG00000133164.2 +38990 chr2 HAVANA gene 223975112 224039319 8891.0 - 0 ENSG00000135919.12 protein_coding SERPINE2 1 OTTHUMG00000133163.7 +38991 chr2 HAVANA gene 224169664 224171537 1874.0 + 0 ENSG00000224826.1 processed_pseudogene AC019109.1 1 OTTHUMG00000153360.1 pseudo_consens +38992 chr2 HAVANA gene 224294930 224295753 824.0 + 0 ENSG00000228681.1 processed_pseudogene AC008072.1 1 OTTHUMG00000153358.1 pseudo_consens +38993 chr2 HAVANA gene 224378698 224402085 3541.0 - 0 ENSG00000124019.9 protein_coding FAM124B 2 OTTHUMG00000133168.3 +38994 chr2 HAVANA gene 224464682 224474500 1016.0 + 0 ENSG00000274629.1 antisense AC073052.2 2 OTTHUMG00000188189.1 +38995 chr2 HAVANA gene 224499387 224500100 714.0 - 0 ENSG00000228446.2 processed_pseudogene AC073052.1 1 OTTHUMG00000153417.2 pseudo_consens,overlapping_locus +38996 chr2 HAVANA gene 224470150 224585397 11505.0 - 0 ENSG00000036257.12 protein_coding CUL3 1 OTTHUMG00000133167.5 overlapping_locus +38997 chr2 HAVANA gene 224703764 224716365 606.0 - 0 ENSG00000283428.1 protein_coding CCDC195 2 OTTHUMG00000191764.1 +38998 chr2 ENSEMBL gene 225010461 225010540 80.0 - 0 ENSG00000263828.1 miRNA MIR4439 3 +38999 chr2 HAVANA gene 224765090 225042445 11065.0 - 0 ENSG00000135905.19 protein_coding DOCK10 1 OTTHUMG00000153428.6 ncRNA_host +39000 chr2 HAVANA gene 225399710 225654018 5461.0 + 0 ENSG00000144460.12 protein_coding NYAP2 2 OTTHUMG00000153450.2 +39001 chr2 HAVANA gene 225698254 225698539 286.0 + 0 ENSG00000228206.2 processed_pseudogene AC016717.1 2 OTTHUMG00000153467.2 overlapping_locus +39002 chr2 HAVANA gene 225698514 225703654 5141.0 + 0 ENSG00000273301.1 lincRNA AC016717.2 2 OTTHUMG00000186319.1 overlapping_locus +39003 chr2 HAVANA gene 225761559 225762112 554.0 + 0 ENSG00000279015.1 TEC AC016717.3 2 OTTHUMG00000176331.1 +39004 chr2 HAVANA gene 225992981 225993197 217.0 - 0 ENSG00000230621.1 processed_pseudogene AC068138.1 2 OTTHUMG00000153470.1 +39005 chr2 HAVANA gene 226180044 226185371 1134.0 - 0 ENSG00000235070.3 lincRNA AC062015.1 2 OTTHUMG00000153471.1 +39006 chr2 ENSEMBL gene 226658710 226658793 84.0 - 0 ENSG00000263363.1 miRNA MIR5702 3 +39007 chr2 HAVANA gene 226731317 226799759 9953.0 - 0 ENSG00000169047.5 protein_coding IRS1 2 OTTHUMG00000133179.3 +39008 chr2 HAVANA gene 226804036 226805061 1026.0 + 0 ENSG00000261379.1 sense_intronic AC010735.1 2 OTTHUMG00000176332.1 overlapping_locus +39009 chr2 HAVANA gene 226800146 226811029 584.0 + 0 ENSG00000272622.1 lincRNA AC010735.2 2 OTTHUMG00000186320.1 overlapping_locus +39010 chr2 ENSEMBL gene 226968989 226969122 134.0 - 0 ENSG00000212391.1 snoRNA RF00554 3 +39011 chr2 HAVANA gene 226835581 226999215 6926.0 + 0 ENSG00000144468.16 protein_coding RHBDD1 2 OTTHUMG00000133178.6 +39012 chr2 HAVANA gene 227002711 227164453 10076.0 - 0 ENSG00000081052.12 protein_coding COL4A4 2 OTTHUMG00000149892.2 +39013 chr2 HAVANA gene 227164565 227314792 9124.0 + 0 ENSG00000169031.19 protein_coding COL4A3 1 OTTHUMG00000149891.5 +39014 chr2 HAVANA gene 227221052 227325201 3652.0 - 0 ENSG00000236432.7 antisense AC097662.1 2 OTTHUMG00000149890.3 +39015 chr2 HAVANA gene 227325151 227357836 6150.0 + 0 ENSG00000168958.19 protein_coding MFF 1 OTTHUMG00000133180.4 +39016 chr2 HAVANA gene 227362156 227381995 2757.0 - 0 ENSG00000168955.3 protein_coding TM4SF20 2 OTTHUMG00000133187.5 +39017 chr2 HAVANA gene 227387683 227387949 267.0 - 0 ENSG00000284629.1 protein_coding SCYGR1 2 OTTHUMG00000192261.1 +39018 chr2 ENSEMBL gene 227472132 227472187 56.0 + 0 ENSG00000284092.1 miRNA MIR5703 3 +39019 chr2 HAVANA gene 227472152 227561214 9321.0 + 0 ENSG00000173744.17 protein_coding AGFG1 1 OTTHUMG00000133186.5 +39020 chr2 HAVANA gene 227587237 227587515 279.0 - 0 ENSG00000285843.1 polymorphic_pseudogene AC064853.2 2 OTTHUMG00000193373.1 +39021 chr2 HAVANA gene 227598893 227599255 363.0 + 0 ENSG00000284643.1 protein_coding SCYGR2 2 OTTHUMG00000192253.1 +39022 chr2 HAVANA gene 227608784 227609101 318.0 + 0 ENSG00000284622.2 polymorphic_pseudogene SCYGR10 2 OTTHUMG00000192254.2 +39023 chr2 HAVANA gene 227614538 227614840 303.0 - 0 ENSG00000284704.1 protein_coding SCYGR3 2 OTTHUMG00000192255.1 +39024 chr2 HAVANA gene 227616998 227617790 540.0 - 0 ENSG00000236116.1 antisense AC064853.1 2 OTTHUMG00000153551.1 +39025 chr2 HAVANA gene 227616998 227618655 1658.0 + 0 ENSG00000284631.1 protein_coding SCYGR4 2 OTTHUMG00000192256.1 +39026 chr2 HAVANA gene 227610090 227648606 3486.0 - 0 ENSG00000042304.11 protein_coding C2orf83 2 OTTHUMG00000153552.2 +39027 chr2 HAVANA gene 227666804 227667061 258.0 + 0 ENSG00000284667.1 protein_coding SCYGR5 2 OTTHUMG00000192257.1 +39028 chr2 HAVANA gene 227683763 227718031 7738.0 - 0 ENSG00000135917.14 protein_coding SLC19A3 2 OTTHUMG00000133185.6 +39029 chr2 HAVANA gene 227724440 227724757 318.0 - 0 ENSG00000284725.1 protein_coding SCYGR6 2 OTTHUMG00000192258.1 +39030 chr2 HAVANA gene 227728335 227728625 291.0 + 0 ENSG00000284718.1 protein_coding SCYGR7 2 OTTHUMG00000192259.1 +39031 chr2 HAVANA gene 227745845 227746681 837.0 + 0 ENSG00000284635.1 protein_coding SCYGR8 2 OTTHUMG00000192260.1 +39032 chr2 ENSEMBL gene 227763052 227763152 101.0 - 0 ENSG00000252346.1 rRNA_pseudogene RNA5SP121 3 +39033 chr2 HAVANA gene 227778510 227778735 226.0 - 0 ENSG00000226718.1 processed_pseudogene SNRPGP8 1 OTTHUMG00000153554.1 pseudo_consens +39034 chr2 HAVANA gene 227801840 227804705 2866.0 + 0 ENSG00000229172.1 processed_pseudogene AC073065.1 1 OTTHUMG00000153567.1 pseudo_consens +39035 chr2 HAVANA gene 227805739 227817564 1594.0 + 0 ENSG00000115009.12 protein_coding CCL20 2 OTTHUMG00000133189.4 +39036 chr2 HAVANA gene 227870083 227870644 562.0 - 0 ENSG00000183514.4 processed_pseudogene TDGF1P2 1 OTTHUMG00000153585.1 pseudo_consens +39037 chr2 ENSEMBL gene 227887631 227887744 114.0 + 0 ENSG00000272237.1 snoRNA RF00402 3 +39038 chr2 HAVANA gene 227871054 227924344 2933.0 + 0 ENSG00000123977.9 protein_coding DAW1 1 OTTHUMG00000133190.3 ncRNA_host +39039 chr2 ENSEMBL gene 228169743 228169849 107.0 + 0 ENSG00000200281.1 snRNA RNU6-624P 3 +39040 chr2 HAVANA gene 227979950 228181645 7009.0 - 0 ENSG00000153820.12 protein_coding SPHKAP 2 OTTHUMG00000153584.1 +39041 chr2 HAVANA gene 228352120 228353215 1096.0 - 0 ENSG00000203387.2 processed_pseudogene AC074019.1 1 OTTHUMG00000153587.2 pseudo_consens +39042 chr2 HAVANA gene 228483261 228611395 676.0 - 0 ENSG00000232023.2 lincRNA LINC01807 1 OTTHUMG00000153589.2 +39043 chr2 HAVANA gene 228683537 228684580 427.0 - 0 ENSG00000228226.1 lincRNA AC012070.1 1 OTTHUMG00000153588.1 +39044 chr2 HAVANA gene 228753324 228753786 463.0 + 0 ENSG00000237322.1 processed_pseudogene RPL7L1P10 1 OTTHUMG00000153591.1 pseudo_consens +39045 chr2 HAVANA gene 229003886 229004400 515.0 + 0 ENSG00000226297.1 processed_pseudogene AC007677.1 1 OTTHUMG00000153592.1 pseudo_consens +39046 chr2 ENSEMBL gene 229236340 229236609 270.0 - 0 ENSG00000253006.1 misc_RNA RN7SKP283 3 +39047 chr2 HAVANA gene 228850526 229271285 3364.0 - 0 ENSG00000153823.18 protein_coding PID1 2 OTTHUMG00000133191.5 ncRNA_host +39048 chr2 ENSEMBL gene 229606238 229606299 62.0 + 0 ENSG00000238782.1 snRNA RNU7-9P 3 +39049 chr2 HAVANA gene 229701794 229702148 355.0 + 0 ENSG00000235993.1 processed_pseudogene AC007559.1 1 OTTHUMG00000153610.1 pseudo_consens +39050 chr2 HAVANA gene 229357629 229714558 3935.0 - 0 ENSG00000187957.7 protein_coding DNER 2 OTTHUMG00000153637.1 +39051 chr2 ENSEMBL gene 229894346 229894453 108.0 + 0 ENSG00000222344.1 snRNA RNU6-613P 3 +39052 chr2 HAVANA gene 229763838 229923239 12594.0 - 0 ENSG00000153827.13 protein_coding TRIP12 1 OTTHUMG00000153623.6 +39053 chr2 ENSEMBL gene 229937814 229937882 69.0 - 0 ENSG00000252333.1 snRNA RNU6-964P 3 +39054 chr2 HAVANA gene 229942728 229945137 582.0 + 0 ENSG00000231534.1 sense_intronic FBXO36-IT1 2 OTTHUMG00000153612.1 overlapping_locus +39055 chr2 ENSEMBL gene 229973315 229973421 107.0 + 0 ENSG00000206725.1 snRNA RNU6-1027P 3 +39056 chr2 HAVANA gene 229922302 230013109 3945.0 + 0 ENSG00000153832.11 protein_coding FBXO36 1 OTTHUMG00000133206.3 ncRNA_host,overlapping_locus +39057 chr2 ENSEMBL gene 230058229 230058324 96.0 - 0 ENSG00000199400.1 misc_RNA RNY4P19 3 +39058 chr2 HAVANA gene 230034974 230068999 4946.0 - 0 ENSG00000163053.10 protein_coding SLC16A14 1 OTTHUMG00000133205.5 ncRNA_host +39059 chr2 HAVANA gene 230138601 230138783 183.0 + 0 ENSG00000283451.1 unitary_pseudogene AC009950.2 2 OTTHUMG00000191828.1 +39060 chr2 HAVANA gene 230121370 230174223 3734.0 + 0 ENSG00000225963.7 antisense AC009950.1 1 OTTHUMG00000154963.4 +39061 chr2 HAVANA gene 230167293 230225729 6865.0 - 0 ENSG00000135899.17 protein_coding SP110 2 OTTHUMG00000133204.6 +39062 chr2 HAVANA gene 230203110 230313215 5582.0 + 0 ENSG00000079263.18 protein_coding SP140 1 OTTHUMG00000153670.8 +39063 chr2 HAVANA gene 230327184 230403732 5650.0 + 0 ENSG00000185404.16 protein_coding SP140L 2 OTTHUMG00000153730.3 +39064 chr2 HAVANA gene 230410700 230412529 1830.0 - 0 ENSG00000279964.1 TEC AC009949.1 2 OTTHUMG00000176333.1 +39065 chr2 ENSEMBL gene 230507101 230507386 286.0 + 0 ENSG00000243650.3 misc_RNA RN7SL834P 3 +39066 chr2 HAVANA gene 230515023 230515638 616.0 + 0 ENSG00000250011.1 processed_pseudogene HMGB1P3 2 OTTHUMG00000153731.1 overlapping_locus +39067 chr2 HAVANA gene 230415942 230544090 12618.0 + 0 ENSG00000067066.16 protein_coding SP100 2 OTTHUMG00000133203.17 ncRNA_host,overlapping_locus +39068 chr2 HAVANA gene 230573167 230573809 643.0 - 0 ENSG00000183022.5 processed_pseudogene TPM3P8 1 OTTHUMG00000153766.1 pseudo_consens,overlapping_locus +39069 chr2 HAVANA gene 230520594 230580006 692.0 - 0 ENSG00000235419.5 antisense AC010149.1 2 OTTHUMG00000153765.1 overlapping_locus +39070 chr2 HAVANA gene 230584815 230586715 315.0 - 0 ENSG00000283202.1 unitary_pseudogene AC010149.2 2 OTTHUMG00000191862.1 +39071 chr2 ENSEMBL gene 230587121 230587227 107.0 + 0 ENSG00000199791.1 snRNA RNU6-451P 3 +39072 chr2 HAVANA gene 230690921 230700529 2609.0 - 0 ENSG00000226125.1 lincRNA LINC01907 2 OTTHUMG00000153829.1 +39073 chr2 HAVANA gene 230725143 230725403 261.0 - 0 ENSG00000237758.1 processed_pseudogene BANF1P3 1 OTTHUMG00000153830.1 pseudo_consens +39074 chr2 ENSEMBL gene 230752141 230752247 107.0 + 0 ENSG00000201044.1 snRNA RNU6-268P 3 +39075 chr2 HAVANA gene 230712845 230821075 5360.0 + 0 ENSG00000135932.10 protein_coding CAB39 2 OTTHUMG00000133220.3 ncRNA_host +39076 chr2 HAVANA gene 230836909 230837385 477.0 + 0 ENSG00000270891.1 processed_pseudogene AC012507.3 1 OTTHUMG00000184256.1 pseudo_consens +39077 chr2 HAVANA gene 230864639 230879248 2611.0 + 0 ENSG00000135916.15 protein_coding ITM2C 1 OTTHUMG00000133219.4 +39078 chr2 HAVANA gene 230886500 230897091 2265.0 + 0 ENSG00000232520.1 antisense AC012507.2 1 OTTHUMG00000153828.1 +39079 chr2 HAVANA gene 230908852 230910102 600.0 + 0 ENSG00000230385.1 antisense AC012507.1 1 OTTHUMG00000153836.1 +39080 chr2 HAVANA gene 230924567 230929919 504.0 + 0 ENSG00000283164.1 antisense AC012507.4 2 OTTHUMG00000191615.1 +39081 chr2 HAVANA gene 230957593 230957950 358.0 + 0 ENSG00000235013.1 processed_pseudogene COX20P2 1 OTTHUMG00000153827.1 pseudo_consens +39082 chr2 HAVANA gene 230907318 230961066 4130.0 - 0 ENSG00000135898.9 protein_coding GPR55 2 OTTHUMG00000133224.4 +39083 chr2 HAVANA gene 230984368 230996032 3693.0 - 0 ENSG00000238062.5 lincRNA SPATA3-AS1 1 OTTHUMG00000154076.1 +39084 chr2 HAVANA gene 230990324 231025055 2856.0 + 0 ENSG00000173699.16 protein_coding SPATA3 1 OTTHUMG00000133221.5 +39085 chr2 HAVANA gene 231037490 231049719 3851.0 + 0 ENSG00000204128.5 protein_coding C2orf72 1 OTTHUMG00000153996.2 +39086 chr2 HAVANA gene 231052040 231052637 598.0 + 0 ENSG00000261829.1 sense_overlapping AC009407.1 2 OTTHUMG00000176272.1 +39087 chr2 HAVANA gene 231108230 231125118 2246.0 - 0 ENSG00000135914.5 protein_coding HTR2B 2 OTTHUMG00000133222.2 +39088 chr2 ENSEMBL gene 231133462 231133630 169.0 + 0 ENSG00000201574.1 snRNA RNU1-93P 3 +39089 chr2 HAVANA gene 231056864 231172827 5187.0 + 0 ENSG00000173692.12 protein_coding PSMD1 1 OTTHUMG00000133223.3 ncRNA_host +39090 chr2 HAVANA gene 231256097 231256306 210.0 + 0 ENSG00000237039.1 processed_pseudogene AC018738.1 2 OTTHUMG00000153962.2 overlapping_locus +39091 chr2 ENSEMBL gene 231362708 231362793 86.0 + 0 ENSG00000263641.1 miRNA MIR4777 3 +39092 chr2 HAVANA gene 231198546 231374837 9661.0 + 0 ENSG00000135931.17 protein_coding ARMC9 1 OTTHUMG00000133229.9 ncRNA_host,overlapping_locus +39093 chr2 HAVANA gene 231388976 231394991 1597.0 + 0 ENSG00000224376.1 processed_transcript AC017104.1 1 OTTHUMG00000153881.1 +39094 chr2 HAVANA gene 231395543 231401164 3806.0 + 0 ENSG00000156966.6 protein_coding B3GNT7 1 OTTHUMG00000153880.1 +39095 chr2 HAVANA gene 231433923 231434426 504.0 - 0 ENSG00000172799.5 processed_pseudogene ZBTB8OSP2 1 OTTHUMG00000153872.1 pseudo_consens +39096 chr2 HAVANA gene 231437101 231437421 321.0 - 0 ENSG00000230047.1 processed_pseudogene AC017104.2 1 OTTHUMG00000153873.1 pseudo_consens +39097 chr2 HAVANA gene 231452195 231453153 568.0 + 0 ENSG00000233538.1 lincRNA AC017104.3 2 OTTHUMG00000153867.1 +39098 chr2 ENSEMBL gene 231455800 231455936 137.0 - 0 ENSG00000206885.1 snoRNA SNORA75 3 +39099 chr2 ENSEMBL gene 231456444 231456523 80.0 - 0 ENSG00000207280.1 snoRNA SNORD20 3 +39100 chr2 ENSEMBL gene 231460371 231460440 70.0 - 0 ENSG00000202400.1 snoRNA SNORD82 3 +39101 chr2 HAVANA gene 231453531 231483641 6929.0 - 0 ENSG00000115053.15 protein_coding NCL 1 OTTHUMG00000153866.3 ncRNA_host +39102 chr2 HAVANA gene 231493708 231495299 1592.0 - 0 ENSG00000283312.1 processed_pseudogene AC017104.4 2 OTTHUMG00000191867.1 +39103 chr2 ENSEMBL gene 231501990 231502201 212.0 - 0 ENSG00000223198.1 snRNA RNU2-22P 3 +39104 chr2 HAVANA gene 231497090 231507256 639.0 - 0 ENSG00000283491.1 unprocessed_pseudogene AC017104.5 2 OTTHUMG00000191868.1 +39105 chr2 HAVANA gene 231508426 231514339 1282.0 - 0 ENSG00000181798.2 lincRNA LINC00471 2 OTTHUMG00000133227.2 +39106 chr2 HAVANA gene 231523160 231530495 3298.0 - 0 ENSG00000171596.6 protein_coding NMUR1 2 OTTHUMG00000133225.2 +39107 chr2 HAVANA gene 231559903 231560364 462.0 + 0 ENSG00000231494.1 processed_pseudogene AC104634.1 1 OTTHUMG00000153868.1 pseudo_consens +39108 chr2 HAVANA gene 231585864 231586327 464.0 + 0 ENSG00000228884.2 processed_pseudogene RPL23AP26 1 OTTHUMG00000153865.1 pseudo_consens +39109 chr2 HAVANA gene 231592901 231594283 1383.0 + 0 ENSG00000177673.3 protein_coding TEX44 2 OTTHUMG00000133226.1 +39110 chr2 ENSEMBL gene 231645998 231646273 276.0 - 0 ENSG00000239202.3 misc_RNA RN7SL499P 3 +39111 chr2 ENSEMBL gene 231711525 231711647 123.0 + 0 ENSG00000277986.1 snRNA RF00015 3 +39112 chr2 ENSEMBL gene 231713314 231713398 85.0 + 0 ENSG00000284378.1 miRNA MIR1244-1 3 +39113 chr2 HAVANA gene 231706895 231713541 3378.0 + 0 ENSG00000187514.16 protein_coding PTMA 1 OTTHUMG00000153810.3 ncRNA_host +39114 chr2 ENSEMBL gene 231768604 231768680 72.0 + 0 ENSG00000281072.1 pseudogene AC073476.4 3 +39115 chr2 HAVANA gene 231732425 231786272 2850.0 - 0 ENSG00000156973.13 protein_coding PDE6D 1 OTTHUMG00000153785.2 +39116 chr2 HAVANA gene 231789481 231789887 407.0 - 0 ENSG00000237641.1 processed_pseudogene AC073476.1 1 OTTHUMG00000157084.1 pseudo_consens +39117 chr2 HAVANA gene 231781671 231809254 6066.0 + 0 ENSG00000144524.17 protein_coding COPS7B 1 OTTHUMG00000133228.4 +39118 chr2 HAVANA gene 231810348 231810844 497.0 - 0 ENSG00000260622.1 processed_pseudogene AC073476.2 1 OTTHUMG00000176281.1 pseudo_consens +39119 chr2 HAVANA gene 231809846 231812352 2507.0 + 0 ENSG00000261096.1 sense_overlapping AC073476.3 2 OTTHUMG00000176280.1 +39120 chr2 ENSEMBL gene 231892242 231892298 57.0 - 0 ENSG00000222246.1 miRNA MIR1471 3 +39121 chr2 HAVANA gene 231921820 231926403 1071.0 - 0 ENSG00000163273.3 protein_coding NPPC 2 OTTHUMG00000133232.2 +39122 chr2 HAVANA gene 231978488 232015720 391.0 - 0 ENSG00000227033.1 antisense AC019130.1 2 OTTHUMG00000153384.1 +39123 chr2 ENSEMBL gene 232172653 232172747 95.0 + 0 ENSG00000207626.1 miRNA MIR562 3 +39124 chr2 HAVANA gene 232343116 232343903 788.0 + 0 ENSG00000251485.1 processed_pseudogene AC068134.3 2 OTTHUMG00000153352.1 overlapping_locus +39125 chr2 HAVANA gene 231961245 232344350 11337.0 + 0 ENSG00000144535.19 protein_coding DIS3L2 1 OTTHUMG00000153385.3 ncRNA_host,overlapping_locus +39126 chr2 HAVANA gene 232349754 232351309 737.0 - 0 ENSG00000230122.1 unprocessed_pseudogene ECEL1P3 2 OTTHUMG00000153353.1 +39127 chr2 HAVANA gene 232368576 232368697 122.0 + 0 ENSG00000275157.1 unprocessed_pseudogene AC068134.4 2 OTTHUMG00000187705.1 +39128 chr2 HAVANA gene 232379635 232381674 680.0 - 0 ENSG00000224516.5 antisense AC068134.1 2 OTTHUMG00000153355.1 +39129 chr2 HAVANA gene 232378534 232382889 3059.0 + 0 ENSG00000163283.6 protein_coding ALPP 2 OTTHUMG00000133255.4 +39130 chr2 HAVANA gene 232385750 232387457 1708.0 - 0 ENSG00000244280.1 transcribed_unprocessed_pseudogene ECEL1P2 2 OTTHUMG00000153343.2 +39131 chr2 HAVANA gene 232406843 232410714 2493.0 + 0 ENSG00000163286.8 protein_coding ALPG 2 OTTHUMG00000133257.2 +39132 chr2 HAVANA gene 232415818 232419816 1742.0 - 0 ENSG00000204121.2 unprocessed_pseudogene ECEL1P1 2 OTTHUMG00000153336.1 +39133 chr2 HAVANA gene 232420661 232421461 576.0 - 0 ENSG00000237087.1 lincRNA AC068134.2 2 OTTHUMG00000153335.1 +39134 chr2 HAVANA gene 232442034 232447418 559.0 + 0 ENSG00000223788.4 unprocessed_pseudogene DIS3L2P1 2 OTTHUMG00000153337.1 +39135 chr2 HAVANA gene 232456123 232460032 2632.0 + 0 ENSG00000163295.4 protein_coding ALPI 2 OTTHUMG00000133258.2 +39136 chr2 HAVANA gene 232479827 232487828 2972.0 - 0 ENSG00000171551.11 protein_coding ECEL1 2 OTTHUMG00000133262.3 +39137 chr2 HAVANA gene 232520463 232525716 2390.0 + 0 ENSG00000237412.6 protein_coding PRSS56 2 OTTHUMG00000153326.3 +39138 chr2 HAVANA gene 232525993 232536667 3132.0 + 0 ENSG00000135902.9 protein_coding CHRND 2 OTTHUMG00000133261.3 +39139 chr2 HAVANA gene 232539727 232546403 2615.0 + 0 ENSG00000196811.11 protein_coding CHRNG 2 OTTHUMG00000153327.2 +39140 chr2 ENSEMBL gene 232550474 232550573 100.0 - 0 ENSG00000284407.1 miRNA MIR5001 3 +39141 chr2 HAVANA gene 232547970 232550592 2623.0 - 0 ENSG00000221944.7 protein_coding TIGD1 2 OTTHUMG00000133260.3 ncRNA_host +39142 chr2 HAVANA gene 232550052 232583644 7177.0 + 0 ENSG00000135930.13 protein_coding EIF4E2 1 OTTHUMG00000133256.3 +39143 chr2 HAVANA gene 232580948 232611971 3725.0 - 0 ENSG00000237126.8 antisense AC073254.1 1 OTTHUMG00000153318.5 +39144 chr2 ENSEMBL gene 232649849 232650136 288.0 + 0 ENSG00000244384.3 misc_RNA RN7SL359P 3 +39145 chr2 HAVANA gene 232606057 232682781 3052.0 + 0 ENSG00000115468.11 protein_coding EFHD1 1 OTTHUMG00000133263.3 ncRNA_host +39146 chr2 HAVANA gene 232729523 232730198 676.0 - 0 ENSG00000213055.3 processed_pseudogene EEF1B2P7 1 OTTHUMG00000153290.1 pseudo_consens +39147 chr2 HAVANA gene 232760146 232767949 851.0 - 0 ENSG00000241409.1 3prime_overlapping_ncRNA AC064852.1 1 OTTHUMG00000153291.1 overlapping_locus +39148 chr2 HAVANA gene 232766464 232776568 2977.0 - 0 ENSG00000115474.6 protein_coding KCNJ13 1 OTTHUMG00000153292.2 overlapping_locus +39149 chr2 ENSEMBL gene 232782665 232782766 102.0 + 0 ENSG00000252452.1 snRNA RNU6-107P 3 +39150 chr2 ENSEMBL gene 232828653 232828751 99.0 + 0 ENSG00000199781.1 misc_RNA RF00019 3 +39151 chr2 HAVANA gene 232697299 232860575 13416.0 + 0 ENSG00000204120.14 protein_coding GIGYF2 1 OTTHUMG00000153237.9 ncRNA_host,overlapping_locus +39152 chr2 HAVANA gene 232857270 232878708 3698.0 + 0 ENSG00000182600.9 protein_coding SNORC 1 OTTHUMG00000133273.6 overlapping_locus +39153 chr2 HAVANA gene 232878686 233013272 4678.0 - 0 ENSG00000066248.14 protein_coding NGEF 1 OTTHUMG00000133272.16 +39154 chr2 HAVANA gene 233012614 233015885 813.0 + 0 ENSG00000222001.2 processed_transcript AC106876.1 2 OTTHUMG00000153231.1 +39155 chr2 HAVANA gene 233032672 233035057 1143.0 + 0 ENSG00000115488.3 protein_coding NEU2 2 OTTHUMG00000133274.3 +39156 chr2 ENSEMBL gene 233205199 233205479 281.0 + 0 ENSG00000263941.2 misc_RNA RN7SL32P 3 +39157 chr2 HAVANA gene 233059967 233207903 8681.0 + 0 ENSG00000168918.13 protein_coding INPP5D 1 OTTHUMG00000133688.6 ncRNA_host +39158 chr2 ENSEMBL gene 233275727 233276002 276.0 + 0 ENSG00000252010.1 scaRNA SCARNA5 3 +39159 chr2 ENSEMBL gene 233288676 233288940 265.0 + 0 ENSG00000251791.1 scaRNA SCARNA6 3 +39160 chr2 HAVANA gene 233210051 233295674 6047.0 + 0 ENSG00000085978.21 protein_coding ATG16L1 2 OTTHUMG00000133619.6 ncRNA_host +39161 chr2 HAVANA gene 233307816 233347055 11885.0 + 0 ENSG00000130561.16 protein_coding SAG 2 OTTHUMG00000153213.3 +39162 chr2 HAVANA gene 233351132 233353416 2285.0 - 0 ENSG00000259793.1 antisense AC013726.1 2 OTTHUMG00000176291.1 +39163 chr2 ENSEMBL gene 233379843 233379955 113.0 - 0 ENSG00000201013.1 misc_RNA RF00019 3 +39164 chr2 HAVANA gene 233354507 233472104 9771.0 + 0 ENSG00000077044.10 protein_coding DGKD 1 OTTHUMG00000133290.6 +39165 chr2 HAVANA gene 233545482 233547032 1551.0 + 0 ENSG00000271639.1 processed_pseudogene AC019072.1 1 OTTHUMG00000184255.1 pseudo_consens +39166 chr2 HAVANA gene 233475520 233566782 9352.0 - 0 ENSG00000085982.13 protein_coding USP40 1 OTTHUMG00000153199.6 +39167 chr2 HAVANA gene 233585439 233586291 853.0 + 0 ENSG00000228949.1 unprocessed_pseudogene UGT1A12P 2 OTTHUMG00000059116.1 +39168 chr2 HAVANA gene 233603553 233604401 849.0 + 0 ENSG00000227846.1 unprocessed_pseudogene UGT1A11P 2 OTTHUMG00000059006.1 +39169 chr2 HAVANA gene 233647926 233649026 762.0 + 0 ENSG00000234143.1 unprocessed_pseudogene UGT1A13P 2 OTTHUMG00000059007.1 overlapping_locus +39170 chr2 HAVANA gene 233693434 233708699 663.0 - 0 ENSG00000224814.1 antisense AC114812.2 2 OTTHUMG00000059036.1 +39171 chr2 HAVANA gene 233721522 233722065 544.0 - 0 ENSG00000233445.1 processed_pseudogene RPL17P11 1 OTTHUMG00000059030.1 pseudo_consens +39172 chr2 HAVANA gene 233738952 233741957 730.0 + 0 ENSG00000248114.1 unprocessed_pseudogene AC114812.3 2 OTTHUMG00000132289.1 overlapping_locus +39173 chr2 HAVANA gene 233742750 233744015 1266.0 - 0 ENSG00000227802.1 transcribed_processed_pseudogene DNAJB3 1 OTTHUMG00000059034.2 pseudo_consens +39174 chr2 HAVANA gene 233747214 233748079 866.0 + 0 ENSG00000228445.1 unprocessed_pseudogene UGT1A2P 2 OTTHUMG00000059035.1 overlapping_locus +39175 chr2 HAVANA gene 233750617 233753656 757.0 + 0 ENSG00000248705.1 unprocessed_pseudogene AC114812.4 2 OTTHUMG00000132288.1 overlapping_locus +39176 chr2 HAVANA gene 233754305 233755345 1041.0 - 0 ENSG00000178836.6 transcribed_processed_pseudogene AC114812.1 1 OTTHUMG00000059033.2 pseudo_consens +39177 chr2 HAVANA gene 233712992 233773299 2345.0 + 0 ENSG00000240224.1 protein_coding UGT1A5 2 OTTHUMG00000059120.1 overlapping_locus +39178 chr2 HAVANA gene 233729108 233773299 2364.0 + 0 ENSG00000243135.6 protein_coding UGT1A3 2 OTTHUMG00000059118.1 overlapping_locus +39179 chr2 HAVANA gene 233718778 233773299 2522.0 + 0 ENSG00000244474.5 protein_coding UGT1A4 2 OTTHUMG00000059119.3 overlapping_locus +39180 chr2 HAVANA gene 233681938 233773299 4167.0 + 0 ENSG00000244122.2 protein_coding UGT1A7 2 OTTHUMG00000059004.3 overlapping_locus +39181 chr2 HAVANA gene 233760248 233773299 4467.0 + 0 ENSG00000241635.7 protein_coding UGT1A1 2 OTTHUMG00000059117.2 overlapping_locus +39182 chr2 HAVANA gene 233671853 233773300 2416.0 + 0 ENSG00000241119.1 protein_coding UGT1A9 2 OTTHUMG00000059124.1 overlapping_locus +39183 chr2 HAVANA gene 233691607 233773300 5180.0 + 0 ENSG00000167165.18 protein_coding UGT1A6 2 OTTHUMG00000059122.9 overlapping_locus +39184 chr2 HAVANA gene 233636454 233773305 3157.0 + 0 ENSG00000242515.5 protein_coding UGT1A10 2 OTTHUMG00000059121.1 overlapping_locus +39185 chr2 HAVANA gene 233617645 233773310 2407.0 + 0 ENSG00000242366.3 protein_coding UGT1A8 2 OTTHUMG00000059123.1 overlapping_locus +39186 chr2 HAVANA gene 233775679 233833423 5730.0 + 0 ENSG00000185038.14 protein_coding MROH2A 1 OTTHUMG00000059037.11 +39187 chr2 HAVANA gene 233833416 233854566 3821.0 - 0 ENSG00000123485.11 protein_coding HJURP 2 OTTHUMG00000059125.11 +39188 chr2 HAVANA gene 233865496 233867359 1864.0 - 0 ENSG00000279809.1 TEC AC005538.2 2 OTTHUMG00000059127.2 overlapping_locus +39189 chr2 HAVANA gene 233865437 233868444 2278.0 - 0 ENSG00000224287.2 transcribed_processed_pseudogene MSL3P1 1 OTTHUMG00000059126.4 pseudo_consens,overlapping_locus +39190 chr2 HAVANA gene 233946146 233955435 594.0 - 0 ENSG00000237581.1 antisense AC005538.1 2 OTTHUMG00000059128.1 +39191 chr2 HAVANA gene 233917398 234019522 7903.0 + 0 ENSG00000144481.16 protein_coding TRPM8 1 OTTHUMG00000059129.10 +39192 chr2 HAVANA gene 234050679 234077134 1265.0 + 0 ENSG00000072080.10 protein_coding SPP2 1 OTTHUMG00000059208.5 +39193 chr2 HAVANA gene 234082259 234084490 2232.0 + 0 ENSG00000279218.1 TEC AC006037.2 2 OTTHUMG00000176295.1 +39194 chr2 HAVANA gene 234109081 234109481 287.0 + 0 ENSG00000226442.2 lincRNA AC006037.1 2 OTTHUMG00000059209.1 +39195 chr2 HAVANA gene 234222838 234224514 1677.0 + 0 ENSG00000261298.1 lincRNA AC122134.1 2 OTTHUMG00000176300.1 +39196 chr2 HAVANA gene 234329483 234329838 356.0 + 0 ENSG00000237784.1 processed_pseudogene AC097713.2 1 OTTHUMG00000153156.1 pseudo_consens +39197 chr2 HAVANA gene 234444590 234454595 538.0 - 0 ENSG00000231682.1 lincRNA LINC01891 1 OTTHUMG00000153157.1 +39198 chr2 HAVANA gene 234455157 234455783 311.0 - 0 ENSG00000232690.1 unprocessed_pseudogene HSPE1P9 1 OTTHUMG00000153155.1 pseudo_consens +39199 chr2 HAVANA gene 234438328 234462127 562.0 + 0 ENSG00000228162.1 lincRNA AC097713.1 1 OTTHUMG00000153158.1 +39200 chr2 HAVANA gene 234493041 234497053 4013.0 - 0 ENSG00000188042.7 protein_coding ARL4C 2 OTTHUMG00000133291.2 retrogene +39201 chr2 HAVANA gene 234682668 234717764 331.0 + 0 ENSG00000280744.1 lincRNA LINC01173 2 OTTHUMG00000189551.1 +39202 chr2 HAVANA gene 234743542 234745606 1748.0 - 0 ENSG00000278593.1 unprocessed_pseudogene AC104394.1 1 OTTHUMG00000187710.1 pseudo_consens +39203 chr2 HAVANA gene 234834315 234913384 2973.0 - 0 ENSG00000235726.5 processed_transcript AC010148.1 1 OTTHUMG00000153147.2 +39204 chr2 HAVANA gene 234951973 235055714 7129.0 + 0 ENSG00000130147.15 protein_coding SH3BP4 1 OTTHUMG00000133292.4 +39205 chr2 HAVANA gene 235084822 235088586 691.0 - 0 ENSG00000226542.1 lincRNA AC114814.1 2 OTTHUMG00000153145.1 +39206 chr2 HAVANA gene 235147016 235147500 485.0 - 0 ENSG00000231032.1 processed_pseudogene AC114814.2 1 OTTHUMG00000153148.1 pseudo_consens +39207 chr2 HAVANA gene 235177896 235178905 663.0 + 0 ENSG00000235293.1 lincRNA AC114814.3 1 OTTHUMG00000153146.1 +39208 chr2 HAVANA gene 235505751 235507566 664.0 + 0 ENSG00000235529.1 sense_intronic AGAP1-IT1 2 OTTHUMG00000153124.1 overlapping_locus +39209 chr2 HAVANA gene 235773855 235783387 600.0 - 0 ENSG00000222007.6 antisense AC064874.1 1 OTTHUMG00000153125.1 +39210 chr2 HAVANA gene 235882362 235882493 132.0 - 0 ENSG00000228499.1 processed_pseudogene TMSB10P1 1 OTTHUMG00000153123.1 pseudo_consens +39211 chr2 ENSEMBL gene 236037250 236037311 62.0 + 0 ENSG00000238812.1 snRNA RNU7-127P 3 +39212 chr2 ENSEMBL gene 236072295 236072556 262.0 + 0 ENSG00000264676.2 misc_RNA RN7SL204P 3 +39213 chr2 HAVANA gene 235494089 236131800 13910.0 + 0 ENSG00000157985.18 protein_coding AGAP1 2 OTTHUMG00000133293.6 ncRNA_host,overlapping_locus +39214 chr2 ENSEMBL gene 236153071 236153172 102.0 - 0 ENSG00000207049.1 misc_RNA RF00019 3 +39215 chr2 HAVANA gene 236165236 236168369 2315.0 - 0 ENSG00000168505.6 protein_coding GBX2 2 OTTHUMG00000133294.3 +39216 chr2 ENSEMBL gene 236210373 236210548 176.0 - 0 ENSG00000200745.1 snRNA RNU1-31P 3 +39217 chr2 HAVANA gene 236194872 236264409 5436.0 - 0 ENSG00000182177.14 protein_coding ASB18 1 OTTHUMG00000153086.3 ncRNA_host +39218 chr2 HAVANA gene 236167447 236294927 1115.0 + 0 ENSG00000233611.3 antisense AC019068.1 2 OTTHUMG00000153089.2 +39219 chr2 HAVANA gene 236367560 236369102 1543.0 + 0 ENSG00000270540.1 antisense AC093915.1 2 OTTHUMG00000185151.1 +39220 chr2 HAVANA gene 236391074 236392388 489.0 + 0 ENSG00000232893.1 antisense IQCA1-AS1 1 OTTHUMG00000153059.1 +39221 chr2 HAVANA gene 236407846 236409077 1232.0 - 0 ENSG00000231546.1 transcribed_processed_pseudogene RPL3P5 1 OTTHUMG00000153071.1 pseudo_consens,overlapping_locus +39222 chr2 HAVANA gene 236324147 236507542 5975.0 - 0 ENSG00000132321.16 protein_coding IQCA1 1 OTTHUMG00000153058.3 overlapping_locus +39223 chr2 HAVANA gene 236567787 236582358 2258.0 + 0 ENSG00000144476.5 protein_coding ACKR3 2 OTTHUMG00000133295.4 +39224 chr2 HAVANA gene 236733382 236754363 1408.0 + 0 ENSG00000232328.1 lincRNA AC084030.1 2 OTTHUMG00000153025.2 +39225 chr2 ENSEMBL gene 237015204 237015305 102.0 - 0 ENSG00000202341.1 snRNA RNU6-1051P 3 +39226 chr2 HAVANA gene 237048599 237056167 2231.0 - 0 ENSG00000124835.2 antisense AC105760.1 2 OTTHUMG00000153026.1 +39227 chr2 HAVANA gene 237059434 237085817 2341.0 - 0 ENSG00000227252.1 antisense AC105760.2 1 OTTHUMG00000153027.1 +39228 chr2 HAVANA gene 237085312 237100466 4743.0 + 0 ENSG00000198612.10 protein_coding COPS8 2 OTTHUMG00000133297.4 +39229 chr2 HAVANA gene 237122910 237124097 669.0 - 0 ENSG00000224844.1 lincRNA AC107079.1 2 OTTHUMG00000153018.1 +39230 chr2 HAVANA gene 237257091 237257676 350.0 + 0 ENSG00000224132.2 lincRNA AC112715.1 1 OTTHUMG00000153019.3 +39231 chr2 HAVANA gene 237324003 237414375 19633.0 - 0 ENSG00000163359.15 protein_coding COL6A3 2 OTTHUMG00000150020.6 +39232 chr2 HAVANA gene 237421420 237425276 588.0 - 0 ENSG00000222022.1 lincRNA AC112721.1 2 OTTHUMG00000152981.1 +39233 chr2 HAVANA gene 237428920 237434822 541.0 - 0 ENSG00000222032.1 lincRNA AC112721.2 2 OTTHUMG00000152980.2 +39234 chr2 ENSEMBL gene 237510931 237510988 58.0 + 0 ENSG00000277842.1 miRNA MIR6811 3 +39235 chr2 HAVANA gene 237485428 237555318 7514.0 + 0 ENSG00000115648.13 protein_coding MLPH 1 OTTHUMG00000133298.3 ncRNA_host +39236 chr2 ENSEMBL gene 237563165 237563270 106.0 + 0 ENSG00000222449.1 snRNA RNU6-1140P 3 +39237 chr2 HAVANA gene 237566574 237567175 264.0 + 0 ENSG00000071677.1 protein_coding PRLH 2 OTTHUMG00000133296.2 +39238 chr2 HAVANA gene 237591020 237595981 1656.0 + 0 ENSG00000234949.2 antisense AC104667.2 1 OTTHUMG00000152979.1 +39239 chr2 HAVANA gene 237574322 237601614 4783.0 - 0 ENSG00000124839.12 protein_coding RAB17 1 OTTHUMG00000133299.5 +39240 chr2 HAVANA gene 237612977 237626525 2057.0 + 0 ENSG00000227107.1 lincRNA AC104667.1 1 OTTHUMG00000152959.1 +39241 chr2 HAVANA gene 237627576 237813682 11901.0 + 0 ENSG00000124831.18 protein_coding LRRFIP1 1 OTTHUMG00000133339.4 overlapping_locus +39242 chr2 HAVANA gene 237798389 237842808 6049.0 + 0 ENSG00000177483.11 protein_coding RBM44 1 OTTHUMG00000152937.4 overlapping_locus +39243 chr2 ENSEMBL gene 237869904 237869982 79.0 + 0 ENSG00000263723.1 snoRNA RF00157 3 +39244 chr2 HAVANA gene 237858893 237912114 1234.0 + 0 ENSG00000132329.10 protein_coding RAMP1 1 OTTHUMG00000133337.3 ncRNA_host +39245 chr2 ENSEMBL gene 238028971 238029063 93.0 - 0 ENSG00000251971.1 snRNA RNU6-1333P 3 +39246 chr2 HAVANA gene 237966827 238042782 4238.0 + 0 ENSG00000184182.18 protein_coding UBE2F 2 OTTHUMG00000133341.4 overlapping_locus +39247 chr2 HAVANA gene 237967014 238099412 3195.0 + 0 ENSG00000258984.5 protein_coding UBE2F-SCLY 2 OTTHUMG00000170602.1 overlapping_locus +39248 chr2 HAVANA gene 238060889 238099413 11733.0 + 0 ENSG00000132330.16 protein_coding SCLY 1 OTTHUMG00000133336.4 overlapping_locus +39249 chr2 HAVANA gene 238100157 238133287 5362.0 + 0 ENSG00000144488.14 protein_coding ESPNL 2 OTTHUMG00000133335.3 +39250 chr2 HAVANA gene 238138722 238152947 3726.0 + 0 ENSG00000168427.8 protein_coding KLHL30 2 OTTHUMG00000152905.1 +39251 chr2 HAVANA gene 238152889 238155994 3106.0 - 0 ENSG00000279484.1 TEC KLHL30-AS1 2 OTTHUMG00000152904.1 +39252 chr2 HAVANA gene 238158982 238168900 3572.0 + 0 ENSG00000178752.15 protein_coding ERFE 1 OTTHUMG00000152901.3 +39253 chr2 HAVANA gene 238170401 238203729 4771.0 - 0 ENSG00000132323.8 protein_coding ILKAP 1 OTTHUMG00000133334.3 +39254 chr2 HAVANA gene 238224552 238231677 2906.0 - 0 ENSG00000186235.10 processed_transcript AC016757.1 2 OTTHUMG00000152898.1 +39255 chr2 HAVANA gene 238238267 238240662 2037.0 - 0 ENSG00000144485.10 protein_coding HES6 2 OTTHUMG00000133340.4 +39256 chr2 HAVANA gene 238231684 238255633 3890.0 + 0 ENSG00000225057.2 processed_transcript AC012485.1 2 OTTHUMG00000133338.5 +39257 chr2 HAVANA gene 238244038 238290102 6877.0 - 0 ENSG00000132326.11 protein_coding PER2 2 OTTHUMG00000152884.3 +39258 chr2 HAVANA gene 238289127 238300185 2424.0 + 0 ENSG00000283635.1 antisense AC012485.3 2 OTTHUMG00000191635.1 +39259 chr2 HAVANA gene 238295392 238300620 982.0 - 0 ENSG00000232306.2 lincRNA AC012485.2 1 OTTHUMG00000152883.2 +39260 chr2 HAVANA gene 238320441 238400900 4617.0 + 0 ENSG00000204104.11 protein_coding TRAF3IP1 2 OTTHUMG00000152872.1 +39261 chr2 ENSEMBL gene 238412642 238412745 104.0 + 0 ENSG00000202099.1 snRNA RNU6-234P 3 +39262 chr2 HAVANA gene 238427077 238427729 452.0 - 0 ENSG00000229915.1 antisense AC016999.1 2 OTTHUMG00000152867.1 +39263 chr2 HAVANA gene 238426742 238452250 7410.0 + 0 ENSG00000065802.11 protein_coding ASB1 1 OTTHUMG00000152866.1 +39264 chr2 HAVANA gene 238454908 238457520 556.0 + 0 ENSG00000274346.1 unprocessed_pseudogene AC016999.2 2 OTTHUMG00000187713.1 +39265 chr2 HAVANA gene 238510690 238555054 1975.0 - 0 ENSG00000225493.1 lincRNA LINC01107 2 OTTHUMG00000152849.1 +39266 chr2 HAVANA gene 238735263 238735547 285.0 - 0 ENSG00000224252.1 processed_pseudogene AC113618.1 2 OTTHUMG00000152850.1 +39267 chr2 HAVANA gene 238720324 238740780 553.0 + 0 ENSG00000234279.1 lincRNA LINC01937 1 OTTHUMG00000152851.1 +39268 chr2 HAVANA gene 238788648 238789716 592.0 - 0 ENSG00000226992.1 lincRNA AC145625.1 2 OTTHUMG00000152844.1 +39269 chr2 HAVANA gene 238848032 238910543 1878.0 + 0 ENSG00000233608.3 protein_coding TWIST2 2 OTTHUMG00000152836.2 +39270 chr2 HAVANA gene 238919302 238926269 3489.0 - 0 ENSG00000227744.4 lincRNA LINC01940 1 OTTHUMG00000152837.1 +39271 chr2 ENSEMBL gene 239068817 239068914 98.0 - 0 ENSG00000266109.1 miRNA MIR4440 3 +39272 chr2 ENSEMBL gene 239085827 239085926 100.0 - 0 ENSG00000264810.1 miRNA MIR4441 3 +39273 chr2 ENSEMBL gene 239305462 239305545 84.0 + 0 ENSG00000265215.1 miRNA MIR4269 3 +39274 chr2 ENSEMBL gene 239351724 239351804 81.0 - 0 ENSG00000264292.1 miRNA MIR2467 3 +39275 chr2 HAVANA gene 239048168 239401654 13368.0 - 0 ENSG00000068024.16 protein_coding HDAC4 2 OTTHUMG00000133344.7 ncRNA_host +39276 chr2 HAVANA gene 239401436 239402364 613.0 + 0 ENSG00000222020.2 antisense AC062017.1 2 OTTHUMG00000152658.1 +39277 chr2 HAVANA gene 239578301 239586094 3700.0 + 0 ENSG00000196758.3 lincRNA AC079612.1 1 OTTHUMG00000133345.2 +39278 chr2 HAVANA gene 239625698 239630839 348.0 + 0 ENSG00000227459.1 lincRNA AC079612.2 2 OTTHUMG00000152416.1 +39279 chr2 HAVANA gene 239734956 239735538 583.0 + 0 ENSG00000259889.1 lincRNA AC093802.2 2 OTTHUMG00000176304.1 +39280 chr2 HAVANA gene 239762860 239802883 3238.0 + 0 ENSG00000220256.3 lincRNA AC093802.1 2 OTTHUMG00000152415.1 +39281 chr2 ENSEMBL gene 239943015 239943094 80.0 - 0 ENSG00000264279.1 miRNA MIR4786 3 +39282 chr2 HAVANA gene 239892450 240025402 9517.0 - 0 ENSG00000130414.11 protein_coding NDUFA10 1 OTTHUMG00000133350.4 ncRNA_host +39283 chr2 HAVANA gene 240028965 240030456 1492.0 - 0 ENSG00000182083.7 protein_coding OR6B2 2 OTTHUMG00000152400.1 +39284 chr2 HAVANA gene 240045077 240047027 1097.0 - 0 ENSG00000178586.5 protein_coding OR6B3 2 OTTHUMG00000152399.3 +39285 chr2 HAVANA gene 240079433 240080362 403.0 + 0 ENSG00000231278.1 unprocessed_pseudogene OR9S24P 2 OTTHUMG00000152395.1 +39286 chr2 HAVANA gene 240109102 240110052 951.0 + 0 ENSG00000213048.3 unitary_pseudogene OR5S1P 2 OTTHUMG00000152396.1 +39287 chr2 HAVANA gene 240126563 240136807 2039.0 - 0 ENSG00000172428.10 protein_coding COPS9 2 OTTHUMG00000133352.4 +39288 chr2 HAVANA gene 240139026 240144562 645.0 - 0 ENSG00000178602.7 protein_coding OTOS 2 OTTHUMG00000133351.4 +39289 chr2 HAVANA gene 240227560 240256035 429.0 - 0 ENSG00000227479.1 lincRNA AC124861.1 2 OTTHUMG00000152377.1 +39290 chr2 ENSEMBL gene 240289216 240289443 228.0 + 0 ENSG00000276366.1 snoRNA RF00012 3 +39291 chr2 ENSEMBL gene 240456001 240456089 89.0 + 0 ENSG00000207611.1 miRNA MIR149 3 +39292 chr2 HAVANA gene 240449315 240456714 3235.0 - 0 ENSG00000218416.4 processed_transcript AC110619.1 1 OTTHUMG00000152371.2 +39293 chr2 HAVANA gene 240435671 240468078 6516.0 + 0 ENSG00000063660.8 protein_coding GPC1 1 OTTHUMG00000133349.6 ncRNA_host +39294 chr2 HAVANA gene 240560054 240564014 3709.0 + 0 ENSG00000188542.9 protein_coding DUSP28 1 OTTHUMG00000152310.1 +39295 chr2 HAVANA gene 240479422 240569209 11477.0 - 0 ENSG00000144504.15 protein_coding ANKMY1 1 OTTHUMG00000133355.9 +39296 chr2 HAVANA gene 240565804 240581372 7867.0 + 0 ENSG00000142327.12 protein_coding RNPEPL1 1 OTTHUMG00000133357.7 +39297 chr2 HAVANA gene 240582700 240586699 4000.0 - 0 ENSG00000260942.1 antisense CAPN10-DT 2 OTTHUMG00000170676.1 +39298 chr2 HAVANA gene 240586716 240617705 7474.0 + 0 ENSG00000142330.19 protein_coding CAPN10 1 OTTHUMG00000133358.4 overlapping_locus +39299 chr2 HAVANA gene 240605431 240631259 5089.0 + 0 ENSG00000178623.11 protein_coding GPR35 2 OTTHUMG00000133356.4 overlapping_locus,retrogene +39300 chr2 HAVANA gene 240672530 240672812 283.0 + 0 ENSG00000276949.1 processed_pseudogene AC011298.3 2 OTTHUMG00000187716.1 +39301 chr2 HAVANA gene 240676418 240682906 3303.0 - 0 ENSG00000185176.12 protein_coding AQP12B 2 OTTHUMG00000152263.1 +39302 chr2 HAVANA gene 240686334 240690414 3398.0 + 0 ENSG00000219159.4 lincRNA AC011298.1 1 OTTHUMG00000152264.2 +39303 chr2 HAVANA gene 240691845 240698483 1742.0 + 0 ENSG00000184945.13 protein_coding AQP12A 2 OTTHUMG00000183906.1 +39304 chr2 HAVANA gene 240701204 240701685 482.0 - 0 ENSG00000274977.1 processed_pseudogene AC011298.2 2 OTTHUMG00000187720.1 +39305 chr2 HAVANA gene 240713761 240821036 16695.0 - 0 ENSG00000130294.16 protein_coding KIF1A 2 OTTHUMG00000151940.14 +39306 chr2 HAVANA gene 240868479 240880502 4459.0 + 0 ENSG00000172482.4 protein_coding AGXT 2 OTTHUMG00000133354.2 +39307 chr2 HAVANA gene 240886048 240896889 2772.0 - 0 ENSG00000172478.17 protein_coding MAB21L4 2 OTTHUMG00000151906.4 +39308 chr2 HAVANA gene 240954617 240967451 2656.0 - 0 ENSG00000233392.5 processed_transcript AC104809.2 1 OTTHUMG00000151847.3 +39309 chr2 HAVANA gene 240981515 240986072 2345.0 - 0 ENSG00000223991.1 antisense AC104809.1 1 OTTHUMG00000151846.1 +39310 chr2 HAVANA gene 240906330 240993311 5978.0 + 0 ENSG00000226321.5 protein_coding CROCC2 1 OTTHUMG00000151855.4 +39311 chr2 HAVANA gene 241010045 241010744 428.0 - 0 ENSG00000229996.1 antisense AC093585.1 2 OTTHUMG00000151830.1 +39312 chr2 HAVANA gene 241015599 241064116 559.0 - 0 ENSG00000225521.1 antisense AC005237.1 2 OTTHUMG00000151792.2 +39313 chr2 HAVANA gene 240998838 241095568 13592.0 + 0 ENSG00000162804.13 protein_coding SNED1 1 OTTHUMG00000151803.3 +39314 chr2 HAVANA gene 241072169 241102332 9938.0 - 0 ENSG00000122085.16 protein_coding MTERF4 1 OTTHUMG00000133393.9 +39315 chr2 HAVANA gene 241118725 241118943 219.0 + 0 ENSG00000235861.1 processed_pseudogene AC005237.2 2 OTTHUMG00000151760.2 +39316 chr2 HAVANA gene 241106099 241150264 10686.0 - 0 ENSG00000115687.13 protein_coding PASK 2 OTTHUMG00000133392.4 +39317 chr2 HAVANA gene 241149576 241183652 3781.0 + 0 ENSG00000115685.14 protein_coding PPP1R7 1 OTTHUMG00000133390.9 +39318 chr2 HAVANA gene 241188509 241225377 5695.0 + 0 ENSG00000146205.13 protein_coding ANO7 2 OTTHUMG00000151702.3 +39319 chr2 HAVANA gene 241227264 241317061 12182.0 - 0 ENSG00000115677.16 protein_coding HDLBP 1 OTTHUMG00000133391.9 +39320 chr2 HAVANA gene 241351340 241353104 442.0 - 0 ENSG00000223374.1 antisense AC005104.1 1 OTTHUMG00000151587.1 +39321 chr2 HAVANA gene 241315100 241354027 7378.0 + 0 ENSG00000168385.17 protein_coding SEPT2 1 OTTHUMG00000133394.12 +39322 chr2 ENSEMBL gene 241477905 241477982 78.0 + 0 ENSG00000263752.1 miRNA MIR3133 3 +39323 chr2 HAVANA gene 241478316 241478993 678.0 + 0 ENSG00000224232.1 processed_pseudogene AC005104.2 1 OTTHUMG00000151575.1 pseudo_consens,overlapping_locus +39324 chr2 HAVANA gene 241356243 241494841 14413.0 + 0 ENSG00000006607.13 protein_coding FARP2 1 OTTHUMG00000151574.4 ncRNA_host,overlapping_locus +39325 chr2 HAVANA gene 241492674 241509730 7584.0 - 0 ENSG00000115694.14 protein_coding STK25 1 OTTHUMG00000133408.16 +39326 chr2 HAVANA gene 241544403 241558977 643.0 - 0 ENSG00000234235.1 antisense BOK-AS1 1 OTTHUMG00000151556.1 +39327 chr2 HAVANA gene 241551424 241574138 2711.0 + 0 ENSG00000176720.5 protein_coding BOK 2 OTTHUMG00000133411.4 +39328 chr2 HAVANA gene 241581922 241582726 805.0 + 0 ENSG00000273113.1 lincRNA AC133528.1 2 OTTHUMG00000186326.1 +39329 chr2 ENSEMBL gene 241584968 241585075 108.0 + 0 ENSG00000207186.1 rRNA_pseudogene RNA5SP122 3 +39330 chr2 HAVANA gene 241584405 241637449 3147.0 - 0 ENSG00000176946.11 protein_coding THAP4 1 OTTHUMG00000133410.3 +39331 chr2 HAVANA gene 241637213 241673857 6638.0 + 0 ENSG00000168397.16 protein_coding ATG4B 1 OTTHUMG00000151514.16 +39332 chr2 HAVANA gene 241675742 241686991 2451.0 - 0 ENSG00000168393.12 protein_coding DTYMK 1 OTTHUMG00000133409.3 +39333 chr2 HAVANA gene 241724615 241725693 584.0 - 0 ENSG00000235351.1 antisense AC114730.3 2 OTTHUMG00000151506.1 +39334 chr2 HAVANA gene 241687085 241729478 10259.0 + 0 ENSG00000168395.15 protein_coding ING5 2 OTTHUMG00000151501.4 +39335 chr2 HAVANA gene 241734715 241735498 472.0 - 0 ENSG00000215692.2 antisense AC114730.1 2 OTTHUMG00000151478.1 +39336 chr2 HAVANA gene 241754793 241755740 668.0 - 0 ENSG00000234793.1 antisense AC114730.2 2 OTTHUMG00000151479.1 +39337 chr2 HAVANA gene 241734579 241768816 5279.0 + 0 ENSG00000180902.17 protein_coding D2HGDH 1 OTTHUMG00000151474.14 +39338 chr2 HAVANA gene 241800916 241801907 739.0 - 0 ENSG00000215023.2 antisense AC131097.1 2 OTTHUMG00000151472.1 +39339 chr2 HAVANA gene 241776825 241804208 1370.0 + 0 ENSG00000154252.11 protein_coding GAL3ST2 2 OTTHUMG00000151473.2 +39340 chr2 HAVANA gene 241808312 241812016 2250.0 - 0 ENSG00000224272.2 antisense AC131097.3 2 OTTHUMG00000151448.3 +39341 chr2 HAVANA gene 241808825 241817413 4689.0 + 0 ENSG00000204099.11 protein_coding NEU4 2 OTTHUMG00000133412.7 +39342 chr2 HAVANA gene 241844380 241845036 571.0 + 0 ENSG00000235151.1 lincRNA AC131097.4 2 OTTHUMG00000151392.1 +39343 chr2 HAVANA gene 241849881 241858908 2114.0 - 0 ENSG00000188389.10 protein_coding PDCD1 2 OTTHUMG00000151342.2 +39344 chr2 HAVANA gene 241869600 241873823 2606.0 + 0 ENSG00000188011.5 protein_coding RTP5 2 OTTHUMG00000151341.1 +39345 chr2 HAVANA gene 241893985 241902551 674.0 - 0 ENSG00000216921.8 protein_coding AC131097.2 1 OTTHUMG00000151374.4 +39346 chr2 HAVANA gene 241970683 241977276 2854.0 + 0 ENSG00000237940.3 lincRNA LINC01238 2 OTTHUMG00000151373.3 overlapping_locus +39347 chr2 HAVANA gene 242001209 242006013 4805.0 + 0 ENSG00000280119.1 TEC AC093642.2 2 OTTHUMG00000133420.2 overlapping_locus +39348 chr2 HAVANA gene 242025183 242026176 565.0 - 0 ENSG00000226423.1 lincRNA AC093642.1 1 OTTHUMG00000151372.1 +39349 chr2 HAVANA gene 241881363 242078722 1601.0 + 0 ENSG00000233806.7 processed_transcript LINC01237 1 OTTHUMG00000151343.2 overlapping_locus +39350 chr2 HAVANA gene 242047695 242084138 561.0 - 0 ENSG00000232002.1 lincRNA LINC01880 2 OTTHUMG00000151385.1 +39351 chr2 HAVANA gene 242087351 242088457 1107.0 - 0 ENSG00000261186.2 antisense LINC01238 2 OTTHUMG00000176311.2 +39352 chr2 HAVANA gene 242119856 242120053 198.0 - 0 ENSG00000224160.1 processed_pseudogene CICP10 1 OTTHUMG00000152147.1 pseudo_consens +39353 chr2 HAVANA gene 242122287 242122469 183.0 + 0 ENSG00000244528.1 processed_pseudogene SEPT14P2 2 OTTHUMG00000152146.1 overlapping_locus +39354 chr2 HAVANA gene 242088633 242160153 1931.0 + 0 ENSG00000220804.8 transcribed_unprocessed_pseudogene LINC01881 2 OTTHUMG00000151386.5 overlapping_locus +39355 chr2 HAVANA gene 242175181 242175634 454.0 + 0 ENSG00000271153.1 processed_pseudogene RPL23AP88 1 OTTHUMG00000184343.1 pseudo_consens +39356 chr20 HAVANA gene 87250 97094 1258.0 + 0 ENSG00000178591.6 protein_coding DEFB125 2 OTTHUMG00000031614.3 +39357 chr20 HAVANA gene 142369 145751 655.0 + 0 ENSG00000125788.5 protein_coding DEFB126 2 OTTHUMG00000031616.3 +39358 chr20 HAVANA gene 157470 159163 514.0 + 0 ENSG00000088782.4 protein_coding DEFB127 2 OTTHUMG00000031617.1 +39359 chr20 HAVANA gene 187853 189681 373.0 - 0 ENSG00000185982.6 protein_coding DEFB128 2 OTTHUMG00000043057.2 +39360 chr20 HAVANA gene 227258 229886 698.0 + 0 ENSG00000125903.4 protein_coding DEFB129 2 OTTHUMG00000031618.2 +39361 chr20 HAVANA gene 257736 261096 2121.0 + 0 ENSG00000186458.4 protein_coding DEFB132 2 OTTHUMG00000043061.1 +39362 chr20 HAVANA gene 267186 268857 1672.0 + 0 ENSG00000272874.1 lincRNA AL034548.1 2 OTTHUMG00000186509.1 +39363 chr20 HAVANA gene 270863 290778 1730.0 - 0 ENSG00000196476.11 protein_coding C20orf96 2 OTTHUMG00000031626.3 +39364 chr20 HAVANA gene 296968 300321 3354.0 + 0 ENSG00000247315.3 protein_coding ZCCHC3 2 OTTHUMG00000188280.1 +39365 chr20 HAVANA gene 325595 330224 4630.0 + 0 ENSG00000177732.8 protein_coding SOX12 2 OTTHUMG00000031623.4 +39366 chr20 HAVANA gene 320313 348224 875.0 - 0 ENSG00000225377.5 antisense NRSN2-AS1 2 OTTHUMG00000031624.1 +39367 chr20 HAVANA gene 346782 359660 2933.0 + 0 ENSG00000125841.12 protein_coding NRSN2 1 OTTHUMG00000031628.5 +39368 chr20 HAVANA gene 362835 397559 3434.0 + 0 ENSG00000101255.10 protein_coding TRIB3 2 OTTHUMG00000031627.5 +39369 chr20 HAVANA gene 407498 430966 4024.0 + 0 ENSG00000125826.20 protein_coding RBCK1 1 OTTHUMG00000031634.7 +39370 chr20 ENSEMBL gene 450663 450762 100.0 + 0 ENSG00000206797.1 misc_RNA RF00019 3 +39371 chr20 HAVANA gene 435480 462553 5831.0 - 0 ENSG00000125875.13 protein_coding TBC1D20 2 OTTHUMG00000031637.5 +39372 chr20 HAVANA gene 472498 543835 29523.0 - 0 ENSG00000101266.18 protein_coding CSNK2A1 2 OTTHUMG00000031636.12 +39373 chr20 HAVANA gene 603797 610398 1555.0 - 0 ENSG00000125878.6 protein_coding TCF15 2 OTTHUMG00000031640.2 +39374 chr20 HAVANA gene 646615 653370 2698.0 - 0 ENSG00000271303.1 protein_coding SRXN1 2 OTTHUMG00000031644.5 overlapping_locus +39375 chr20 HAVANA gene 646626 675800 2714.0 - 0 ENSG00000270299.1 protein_coding AL121758.1 1 OTTHUMG00000184659.2 overlapping_locus +39376 chr20 HAVANA gene 661596 676179 3577.0 - 0 ENSG00000215397.3 protein_coding SCRT2 2 OTTHUMG00000130829.2 overlapping_locus +39377 chr20 HAVANA gene 760080 776015 3603.0 - 0 ENSG00000101276.15 protein_coding SLC52A3 1 OTTHUMG00000031647.8 +39378 chr20 HAVANA gene 839447 839977 531.0 - 0 ENSG00000101278.6 processed_pseudogene RPS10P5 1 OTTHUMG00000031646.4 pseudo_consens +39379 chr20 HAVANA gene 833715 857463 2722.0 + 0 ENSG00000125898.12 protein_coding FAM110A 2 OTTHUMG00000031649.3 +39380 chr20 HAVANA gene 869899 916317 4676.0 - 0 ENSG00000101280.7 protein_coding ANGPT4 2 OTTHUMG00000031652.2 +39381 chr20 HAVANA gene 958452 1002264 2710.0 - 0 ENSG00000101282.8 protein_coding RSPO4 2 OTTHUMG00000031651.3 +39382 chr20 HAVANA gene 1117847 1118450 209.0 - 0 ENSG00000276026.1 antisense AL031665.2 2 OTTHUMG00000186544.1 +39383 chr20 HAVANA gene 1160584 1161697 1114.0 + 0 ENSG00000215388.3 processed_pseudogene ACTG1P3 1 OTTHUMG00000031654.1 pseudo_consens,overlapping_locus +39384 chr20 HAVANA gene 1180561 1185415 2210.0 - 0 ENSG00000125895.5 protein_coding TMEM74B 2 OTTHUMG00000031655.3 +39385 chr20 HAVANA gene 1113263 1189415 5296.0 + 0 ENSG00000125818.17 protein_coding PSMF1 2 OTTHUMG00000031656.11 overlapping_locus +39386 chr20 HAVANA gene 1186092 1207036 572.0 + 0 ENSG00000274269.1 processed_transcript AL031665.1 2 OTTHUMG00000186550.1 overlapping_locus +39387 chr20 HAVANA gene 1203454 1208274 1604.0 + 0 ENSG00000215595.1 protein_coding C20orf202 2 OTTHUMG00000129375.1 overlapping_locus +39388 chr20 HAVANA gene 1226056 1296421 2730.0 + 0 ENSG00000244588.5 protein_coding RAD21L1 2 OTTHUMG00000031664.8 overlapping_locus +39389 chr20 HAVANA gene 1266280 1309328 5709.0 + 0 ENSG00000101298.14 protein_coding SNPH 2 OTTHUMG00000031662.4 overlapping_locus +39390 chr20 HAVANA gene 1320710 1324367 3658.0 + 0 ENSG00000280162.1 TEC AL136531.3 2 OTTHUMG00000185844.1 +39391 chr20 HAVANA gene 1309909 1329239 2653.0 - 0 ENSG00000125775.14 protein_coding SDCBP2 2 OTTHUMG00000031661.4 overlapping_locus +39392 chr20 HAVANA gene 1361622 1362585 480.0 + 0 ENSG00000229728.1 antisense AL136531.1 1 OTTHUMG00000031663.1 overlapping_locus +39393 chr20 HAVANA gene 1325405 1378734 4058.0 + 0 ENSG00000234684.6 antisense SDCBP2-AS1 2 OTTHUMG00000031671.2 overlapping_locus +39394 chr20 ENSEMBL gene 1392900 1392961 62.0 - 0 ENSG00000284436.1 miRNA MIR6869 3 +39395 chr20 HAVANA gene 1317571 1393096 1375.0 - 0 ENSG00000274322.1 protein_coding AL136531.2 2 OTTHUMG00000186553.2 ncRNA_host,overlapping_locus +39396 chr20 HAVANA gene 1368978 1393172 2577.0 - 0 ENSG00000088832.16 protein_coding FKBP1A 2 OTTHUMG00000031666.3 ncRNA_host,overlapping_locus +39397 chr20 HAVANA gene 1442162 1473842 6531.0 - 0 ENSG00000088833.17 protein_coding NSFL1C 2 OTTHUMG00000031665.7 overlapping_locus +39398 chr20 HAVANA gene 1470741 1491587 5034.0 - 0 ENSG00000196209.12 protein_coding SIRPB2 2 OTTHUMG00000031670.4 overlapping_locus +39399 chr20 ENSEMBL gene 1529056 1529159 104.0 - 0 ENSG00000252103.1 snRNA RNU6-917P 3 +39400 chr20 HAVANA gene 1516759 1557653 1720.0 - 0 ENSG00000242324.1 unprocessed_pseudogene AL049634.1 2 OTTHUMG00000031673.1 overlapping_locus +39401 chr20 HAVANA gene 1534251 1558843 1961.0 - 0 ENSG00000125900.12 protein_coding SIRPD 1 OTTHUMG00000031674.1 overlapping_locus +39402 chr20 HAVANA gene 1591392 1591848 457.0 + 0 ENSG00000271523.1 processed_pseudogene AL049634.3 1 OTTHUMG00000184906.1 pseudo_consens +39403 chr20 HAVANA gene 1540144 1620009 1283.0 - 0 ENSG00000260861.6 protein_coding AL049634.2 1 OTTHUMG00000172944.5 overlapping_locus +39404 chr20 HAVANA gene 1563521 1620061 6091.0 - 0 ENSG00000101307.15 protein_coding SIRPB1 1 OTTHUMG00000031676.10 overlapping_locus +39405 chr20 HAVANA gene 1633508 1648472 2965.0 + 0 ENSG00000237914.5 antisense SIRPG-AS1 2 OTTHUMG00000031675.2 +39406 chr20 HAVANA gene 1629152 1657779 2242.0 - 0 ENSG00000089012.14 protein_coding SIRPG 2 OTTHUMG00000031680.5 +39407 chr20 ENSEMBL gene 1666360 1666640 281.0 + 0 ENSG00000242348.3 misc_RNA RN7SL561P 3 +39408 chr20 HAVANA gene 1676662 1676907 246.0 - 0 ENSG00000236550.1 unprocessed_pseudogene AL109809.3 2 OTTHUMG00000154774.1 overlapping_locus +39409 chr20 HAVANA gene 1665283 1708200 1216.0 - 0 ENSG00000223750.1 unprocessed_pseudogene SIRPB3P 2 OTTHUMG00000031678.2 overlapping_locus +39410 chr20 HAVANA gene 1722045 1722537 493.0 - 0 ENSG00000234282.1 unprocessed_pseudogene AL109809.2 2 OTTHUMG00000154773.1 +39411 chr20 HAVANA gene 1756756 1758940 2185.0 - 0 ENSG00000271461.1 processed_pseudogene AL109809.4 1 OTTHUMG00000184919.1 pseudo_consens +39412 chr20 HAVANA gene 1767957 1779995 1564.0 - 0 ENSG00000232528.3 transcribed_unitary_pseudogene AL109809.1 2 OTTHUMG00000154775.2 +39413 chr20 HAVANA gene 1804016 1817606 346.0 - 0 ENSG00000230839.1 lincRNA AL121760.1 2 OTTHUMG00000031681.1 +39414 chr20 HAVANA gene 1888128 1894374 1607.0 - 0 ENSG00000276649.1 antisense AL117335.1 2 OTTHUMG00000186567.1 +39415 chr20 HAVANA gene 1894167 1940592 5068.0 + 0 ENSG00000198053.11 protein_coding SIRPA 2 OTTHUMG00000031682.3 +39416 chr20 HAVANA gene 1978757 1994285 2847.0 - 0 ENSG00000101327.8 protein_coding PDYN 2 OTTHUMG00000031683.2 +39417 chr20 HAVANA gene 1947246 2007517 1802.0 + 0 ENSG00000233896.1 antisense PDYN-AS1 2 OTTHUMG00000129569.2 +39418 chr20 HAVANA gene 2075555 2075822 268.0 + 0 ENSG00000227663.1 processed_pseudogene RPL7P2 1 OTTHUMG00000031686.1 pseudo_consens +39419 chr20 HAVANA gene 2101611 2177038 7055.0 + 0 ENSG00000125834.12 protein_coding STK35 2 OTTHUMG00000031688.4 +39420 chr20 HAVANA gene 2207217 2213151 546.0 + 0 ENSG00000226644.5 lincRNA AL121899.1 1 OTTHUMG00000031689.1 +39421 chr20 HAVANA gene 2296001 2341078 2693.0 + 0 ENSG00000125780.11 protein_coding TGM3 2 OTTHUMG00000031690.3 +39422 chr20 HAVANA gene 2380908 2432753 2292.0 + 0 ENSG00000166948.9 protein_coding TGM6 2 OTTHUMG00000031692.2 +39423 chr20 ENSEMBL gene 2453010 2453117 108.0 - 0 ENSG00000207305.1 misc_RNA RF00019 3 +39424 chr20 HAVANA gene 2461634 2470853 1278.0 - 0 ENSG00000125835.18 protein_coding SNRPB 2 OTTHUMG00000031694.4 overlapping_locus +39425 chr20 HAVANA gene 2467212 2508907 823.0 - 0 ENSG00000256566.1 protein_coding AL049650.1 2 OTTHUMG00000168016.1 overlapping_locus +39426 chr20 HAVANA gene 2481817 2524702 4643.0 - 0 ENSG00000088876.11 protein_coding ZNF343 2 OTTHUMG00000031701.4 overlapping_locus +39427 chr20 HAVANA gene 2536607 2641784 4935.0 + 0 ENSG00000149488.13 protein_coding TMC2 2 OTTHUMG00000031698.4 +39428 chr20 ENSEMBL gene 2652777 2652842 66.0 + 0 ENSG00000284481.1 miRNA MIR1292 3 +39429 chr20 ENSEMBL gene 2654212 2654286 75.0 + 0 ENSG00000221116.1 snoRNA SNORD110 3 +39430 chr20 ENSEMBL gene 2655067 2655198 132.0 + 0 ENSG00000271798.1 snoRNA SNORA51 3 +39431 chr20 ENSEMBL gene 2656097 2656182 86.0 + 0 ENSG00000212498.1 snoRNA SNORD86 3 +39432 chr20 ENSEMBL gene 2656624 2656694 71.0 + 0 ENSG00000229686.1 snoRNA SNORD56 3 +39433 chr20 ENSEMBL gene 2656939 2657010 72.0 + 0 ENSG00000226572.1 snoRNA SNORD57 3 +39434 chr20 HAVANA gene 2652145 2658393 5398.0 + 0 ENSG00000101361.16 protein_coding NOP56 2 OTTHUMG00000031703.7 ncRNA_host +39435 chr20 HAVANA gene 2658395 2664219 2567.0 - 0 ENSG00000101365.20 protein_coding IDH3B 2 OTTHUMG00000031699.6 +39436 chr20 HAVANA gene 2664352 2665874 872.0 + 0 ENSG00000228293.1 antisense AL049712.1 1 OTTHUMG00000031696.1 +39437 chr20 HAVANA gene 2692878 2760108 3717.0 + 0 ENSG00000088881.20 protein_coding EBF4 2 OTTHUMG00000031709.7 +39438 chr20 HAVANA gene 2780614 2781041 428.0 + 0 ENSG00000226217.1 processed_pseudogene RPL19P1 1 OTTHUMG00000031708.1 pseudo_consens +39439 chr20 HAVANA gene 2794069 2800637 2391.0 - 0 ENSG00000088882.7 protein_coding CPXM1 2 OTTHUMG00000031706.2 +39440 chr20 HAVANA gene 2814987 2815833 754.0 + 0 ENSG00000258713.2 protein_coding C20orf141 2 OTTHUMG00000031707.3 overlapping_locus +39441 chr20 HAVANA gene 2814968 2818066 1866.0 + 0 ENSG00000241690.3 protein_coding AL035460.1 1 OTTHUMG00000171821.1 overlapping_locus +39442 chr20 HAVANA gene 2816302 2820284 3892.0 + 0 ENSG00000198326.9 protein_coding TMEM239 2 OTTHUMG00000031713.3 overlapping_locus +39443 chr20 HAVANA gene 2835314 2841190 2341.0 - 0 ENSG00000132635.16 protein_coding PCED1A 2 OTTHUMG00000031716.7 +39444 chr20 HAVANA gene 2840703 2866732 3364.0 + 0 ENSG00000215305.9 protein_coding VPS16 2 OTTHUMG00000031714.5 overlapping_locus +39445 chr20 HAVANA gene 2864184 3039076 4469.0 + 0 ENSG00000132670.20 protein_coding PTPRA 2 OTTHUMG00000031718.6 overlapping_locus +39446 chr20 HAVANA gene 3043622 3045747 823.0 + 0 ENSG00000125787.11 protein_coding GNRH2 2 OTTHUMG00000031723.2 +39447 chr20 HAVANA gene 3045945 3048254 1127.0 + 0 ENSG00000125901.5 protein_coding MRPS26 2 OTTHUMG00000031721.2 +39448 chr20 HAVANA gene 3071620 3072517 513.0 + 0 ENSG00000101405.3 protein_coding OXT 2 OTTHUMG00000031724.2 +39449 chr20 HAVANA gene 3082556 3084724 619.0 - 0 ENSG00000101200.5 protein_coding AVP 2 OTTHUMG00000031733.2 +39450 chr20 ENSEMBL gene 3094171 3094509 339.0 + 0 ENSG00000263905.2 misc_RNA RN7SL555P 3 +39451 chr20 HAVANA gene 3106913 3150867 2027.0 + 0 ENSG00000235958.5 antisense UBOX5-AS1 2 OTTHUMG00000031730.1 +39452 chr20 HAVANA gene 3146519 3159897 2874.0 - 0 ENSG00000215251.3 protein_coding FASTKD5 2 OTTHUMG00000031727.2 overlapping_locus +39453 chr20 HAVANA gene 3107573 3160196 4738.0 - 0 ENSG00000185019.16 protein_coding UBOX5 2 OTTHUMG00000031731.3 overlapping_locus +39454 chr20 HAVANA gene 3162617 3173592 5395.0 - 0 ENSG00000088899.15 protein_coding LZTS3 2 OTTHUMG00000031735.3 +39455 chr20 HAVANA gene 3190350 3204685 1832.0 - 0 ENSG00000198171.12 protein_coding DDRGK1 2 OTTHUMG00000031732.2 +39456 chr20 HAVANA gene 3208868 3223870 2071.0 + 0 ENSG00000125877.12 protein_coding ITPA 2 OTTHUMG00000031738.4 +39457 chr20 HAVANA gene 3227417 3239559 4346.0 - 0 ENSG00000088836.13 protein_coding SLC4A11 2 OTTHUMG00000031740.8 +39458 chr20 HAVANA gene 3239705 3245382 5678.0 + 0 ENSG00000277287.1 lincRNA AL109976.1 2 OTTHUMG00000186579.1 +39459 chr20 ENSEMBL gene 3360036 3360142 107.0 + 0 ENSG00000201294.1 snRNA RNU6-1019P 3 +39460 chr20 HAVANA gene 3361880 3362324 445.0 - 0 ENSG00000226632.1 processed_pseudogene UBE2V1P1 1 OTTHUMG00000031743.1 pseudo_consens,overlapping_locus +39461 chr20 ENSEMBL gene 3384229 3384440 212.0 + 0 ENSG00000201346.2 snoRNA RF00012 3 +39462 chr20 HAVANA gene 3249305 3407625 8541.0 - 0 ENSG00000088854.12 protein_coding C20orf194 2 OTTHUMG00000031742.2 overlapping_locus +39463 chr20 HAVANA gene 3465177 3465444 268.0 - 0 ENSG00000225116.1 processed_pseudogene AL353193.1 1 OTTHUMG00000031744.1 pseudo_consens +39464 chr20 HAVANA gene 3489529 3491005 1477.0 - 0 ENSG00000230568.1 processed_pseudogene SF3A3P1 1 OTTHUMG00000031745.1 pseudo_consens +39465 chr20 HAVANA gene 3471040 3651122 8753.0 + 0 ENSG00000088812.17 protein_coding ATRN 2 OTTHUMG00000031746.2 +39466 chr20 HAVANA gene 3659292 3663399 1517.0 - 0 ENSG00000125861.14 protein_coding GFRA4 2 OTTHUMG00000031748.4 +39467 chr20 HAVANA gene 3667965 3682246 5834.0 - 0 ENSG00000149451.17 protein_coding ADAM33 2 OTTHUMG00000031758.4 +39468 chr20 HAVANA gene 3686970 3707128 7886.0 - 0 ENSG00000088827.12 protein_coding SIGLEC1 2 OTTHUMG00000031757.2 +39469 chr20 HAVANA gene 3732667 3753111 3151.0 + 0 ENSG00000132622.10 protein_coding HSPA12B 2 OTTHUMG00000031755.3 +39470 chr20 HAVANA gene 3753508 3768387 2415.0 - 0 ENSG00000101220.17 protein_coding C20orf27 2 OTTHUMG00000031753.2 +39471 chr20 HAVANA gene 3777504 3781448 1925.0 - 0 ENSG00000101222.12 protein_coding SPEF1 2 OTTHUMG00000031756.2 +39472 chr20 HAVANA gene 3783851 3786690 2840.0 - 0 ENSG00000125817.7 protein_coding CENPB 2 OTTHUMG00000031761.2 +39473 chr20 HAVANA gene 3786772 3806121 4314.0 + 0 ENSG00000101224.17 protein_coding CDC25B 2 OTTHUMG00000031764.3 +39474 chr20 HAVANA gene 3808357 3812434 843.0 + 0 ENSG00000275491.1 lincRNA LINC01730 2 OTTHUMG00000186580.1 overlapping_locus +39475 chr20 HAVANA gene 3811384 3823882 562.0 + 0 ENSG00000274949.1 processed_transcript AL109804.1 2 OTTHUMG00000186581.1 overlapping_locus +39476 chr20 HAVANA gene 3820524 3828837 5490.0 + 0 ENSG00000125843.10 protein_coding AP5S1 2 OTTHUMG00000031760.4 overlapping_locus +39477 chr20 HAVANA gene 3846799 3876123 11771.0 + 0 ENSG00000088888.17 protein_coding MAVS 2 OTTHUMG00000031765.4 +39478 chr20 HAVANA gene 3888239 3888868 441.0 - 0 ENSG00000229539.1 antisense AL353194.1 2 OTTHUMG00000031766.1 +39479 chr20 ENSEMBL gene 3917502 3917563 62.0 - 0 ENSG00000283320.1 miRNA MIR103B2 3 +39480 chr20 ENSEMBL gene 3917494 3917571 78.0 + 0 ENSG00000199024.1 miRNA MIR103A2 3 +39481 chr20 HAVANA gene 3921279 3923400 669.0 - 0 ENSG00000275582.1 antisense AL031670.1 2 OTTHUMG00000186598.1 +39482 chr20 HAVANA gene 3888839 3929882 6698.0 + 0 ENSG00000125779.22 protein_coding PANK2 2 OTTHUMG00000031768.7 ncRNA_host +39483 chr20 HAVANA gene 3927309 4015582 7668.0 - 0 ENSG00000101236.16 protein_coding RNF24 2 OTTHUMG00000031770.4 +39484 chr20 HAVANA gene 4023917 4024444 528.0 + 0 ENSG00000226608.3 processed_pseudogene FTLP3 2 OTTHUMG00000031769.2 +39485 chr20 HAVANA gene 4059633 4060113 481.0 - 0 ENSG00000215063.3 processed_pseudogene RPL21P2 1 OTTHUMG00000031773.1 pseudo_consens +39486 chr20 HAVANA gene 4070152 4075165 686.0 - 0 ENSG00000205300.3 lincRNA AL356414.1 2 OTTHUMG00000031774.1 +39487 chr20 HAVANA gene 4120980 4187747 2946.0 + 0 ENSG00000088826.17 protein_coding SMOX 2 OTTHUMG00000031777.4 +39488 chr20 HAVANA gene 4193065 4195943 697.0 + 0 ENSG00000230176.2 antisense LINC01433 2 OTTHUMG00000031776.2 +39489 chr20 HAVANA gene 4220631 4249074 2790.0 - 0 ENSG00000171873.7 protein_coding ADRA1D 2 OTTHUMG00000031779.4 +39490 chr20 HAVANA gene 4431161 4431673 408.0 - 0 ENSG00000236387.1 lincRNA AL139350.1 2 OTTHUMG00000031781.1 +39491 chr20 HAVANA gene 4475638 4525200 168.0 + 0 ENSG00000238282.1 lincRNA AL121781.1 2 OTTHUMG00000031780.1 +39492 chr20 HAVANA gene 4590993 4591300 308.0 - 0 ENSG00000228210.1 processed_pseudogene AL121916.1 2 OTTHUMG00000031782.1 +39493 chr20 HAVANA gene 4629427 4630219 793.0 - 0 ENSG00000226948.1 processed_pseudogene RPS4XP2 1 OTTHUMG00000031784.2 pseudo_consens +39494 chr20 HAVANA gene 4686236 4701590 2851.0 + 0 ENSG00000171867.16 protein_coding PRNP 2 OTTHUMG00000031786.4 +39495 chr20 HAVANA gene 4721910 4728460 3980.0 + 0 ENSG00000171864.4 protein_coding PRND 2 OTTHUMG00000031789.2 +39496 chr20 HAVANA gene 4735669 4736673 687.0 - 0 ENSG00000231071.1 processed_pseudogene AL133396.1 1 OTTHUMG00000031783.2 pseudo_consens,overlapping_locus +39497 chr20 HAVANA gene 4731282 4740668 2333.0 - 0 ENSG00000180259.9 lincRNA PRNT 2 OTTHUMG00000031785.3 overlapping_locus +39498 chr20 HAVANA gene 4761300 4761696 397.0 + 0 ENSG00000278595.1 lincRNA AL133396.2 2 OTTHUMG00000186602.1 +39499 chr20 HAVANA gene 4780023 4823645 5759.0 - 0 ENSG00000101265.15 protein_coding RASSF2 2 OTTHUMG00000031790.2 +39500 chr20 ENSEMBL gene 4868984 4869118 135.0 + 0 ENSG00000252096.1 snoRNA RF00322 3 +39501 chr20 HAVANA gene 4852356 5010293 7515.0 - 0 ENSG00000089057.14 protein_coding SLC23A2 2 OTTHUMG00000031793.3 +39502 chr20 HAVANA gene 5013520 5013724 205.0 - 0 ENSG00000234573.1 processed_pseudogene AL121890.1 1 OTTHUMG00000031792.1 pseudo_consens +39503 chr20 HAVANA gene 5045761 5046276 516.0 - 0 ENSG00000277087.1 lincRNA AL121890.3 2 OTTHUMG00000186604.1 +39504 chr20 HAVANA gene 5049857 5050321 465.0 - 0 ENSG00000276768.1 lincRNA AL121890.2 2 OTTHUMG00000186605.1 +39505 chr20 HAVANA gene 5061037 5061340 304.0 - 0 ENSG00000278816.1 lincRNA AL121890.5 2 OTTHUMG00000186606.1 +39506 chr20 HAVANA gene 5066082 5068154 609.0 - 0 ENSG00000277425.1 lincRNA AL121890.4 2 OTTHUMG00000186607.1 +39507 chr20 ENSEMBL gene 5098387 5098476 90.0 - 0 ENSG00000212536.1 rRNA_pseudogene RNA5SP474 3 +39508 chr20 HAVANA gene 5068232 5113103 3051.0 - 0 ENSG00000089063.14 protein_coding TMEM230 2 OTTHUMG00000031796.4 +39509 chr20 ENSEMBL gene 5113993 5114083 91.0 - 0 ENSG00000252367.1 misc_RNA RF00019 3 +39510 chr20 ENSEMBL gene 5121417 5121539 123.0 - 0 ENSG00000212517.1 snoRNA RF00568 3 +39511 chr20 HAVANA gene 5114953 5126626 1471.0 - 0 ENSG00000132646.10 protein_coding PCNA 2 OTTHUMG00000031798.2 ncRNA_host +39512 chr20 HAVANA gene 5126786 5197887 11893.0 + 0 ENSG00000101290.13 protein_coding CDS2 2 OTTHUMG00000031801.3 +39513 chr20 HAVANA gene 5292388 5292831 444.0 - 0 ENSG00000225022.1 processed_pseudogene UBE2D3P1 2 OTTHUMG00000031799.2 +39514 chr20 HAVANA gene 5302040 5314369 1155.0 - 0 ENSG00000101292.7 protein_coding PROKR2 2 OTTHUMG00000031800.2 +39515 chr20 ENSEMBL gene 5346006 5346160 155.0 - 0 ENSG00000200313.1 rRNA_pseudogene RNA5-8SP7 3 +39516 chr20 HAVANA gene 5407564 5407876 313.0 + 0 ENSG00000276688.1 lincRNA AL121757.2 2 OTTHUMG00000186609.1 +39517 chr20 HAVANA gene 5426895 5471094 2575.0 - 0 ENSG00000226995.7 lincRNA LINC00658 2 OTTHUMG00000031805.3 +39518 chr20 HAVANA gene 5471207 5475182 1964.0 + 0 ENSG00000230563.2 lincRNA AL121757.1 2 OTTHUMG00000031804.2 +39519 chr20 HAVANA gene 5499116 5502881 395.0 + 0 ENSG00000266908.1 lincRNA AL109935.2 2 OTTHUMG00000182079.1 +39520 chr20 HAVANA gene 5496067 5504613 6294.0 - 0 ENSG00000205181.5 lincRNA LINC00654 2 OTTHUMG00000031810.4 +39521 chr20 HAVANA gene 5507875 5510002 358.0 - 0 ENSG00000225640.1 lincRNA LINC01729 2 OTTHUMG00000031808.1 +39522 chr20 HAVANA gene 5532878 5533335 458.0 + 0 ENSG00000225831.1 processed_pseudogene RPS18P1 1 OTTHUMG00000031811.1 pseudo_consens +39523 chr20 HAVANA gene 5533628 5535889 473.0 + 0 ENSG00000235820.1 antisense AL109935.1 2 OTTHUMG00000031809.1 +39524 chr20 HAVANA gene 5548840 5549481 642.0 + 0 ENSG00000233578.1 processed_pseudogene EIF4EP1 1 OTTHUMG00000031807.1 pseudo_consens +39525 chr20 HAVANA gene 5544404 5611026 7527.0 - 0 ENSG00000125772.12 protein_coding GPCPD1 2 OTTHUMG00000031806.3 +39526 chr20 HAVANA gene 5750393 5863912 1702.0 + 0 ENSG00000171984.14 protein_coding SHLD1 2 OTTHUMG00000031813.3 +39527 chr20 ENSEMBL gene 5890055 5890212 158.0 + 0 ENSG00000202380.1 snRNA RNU1-55P 3 +39528 chr20 HAVANA gene 5911430 5925361 4535.0 + 0 ENSG00000089199.9 protein_coding CHGB 2 OTTHUMG00000031821.3 +39529 chr20 HAVANA gene 5928085 5929318 1234.0 - 0 ENSG00000215589.3 processed_pseudogene KANK1P1 1 OTTHUMG00000031815.2 pseudo_consens +39530 chr20 HAVANA gene 5937235 5950558 3776.0 - 0 ENSG00000089195.14 protein_coding TRMT6 2 OTTHUMG00000031816.2 +39531 chr20 ENSEMBL gene 5964538 5964650 113.0 + 0 ENSG00000207380.1 misc_RNA RF00019 3 +39532 chr20 HAVANA gene 5965180 5965511 332.0 + 0 ENSG00000231961.1 processed_pseudogene AL035461.1 2 OTTHUMG00000031819.1 overlapping_locus +39533 chr20 HAVANA gene 5950652 5998977 7691.0 + 0 ENSG00000125885.13 protein_coding MCM8 2 OTTHUMG00000031822.5 ncRNA_host,overlapping_locus +39534 chr20 HAVANA gene 6000418 6000941 524.0 + 0 ENSG00000275632.1 lincRNA AL035461.2 2 OTTHUMG00000186610.1 +39535 chr20 ENSEMBL gene 6001733 6002030 298.0 + 0 ENSG00000263755.2 misc_RNA RN7SL498P 3 +39536 chr20 HAVANA gene 5990943 6005821 983.0 - 0 ENSG00000278719.1 antisense MCM8-AS1 2 OTTHUMG00000186611.1 +39537 chr20 HAVANA gene 6006090 6040053 5370.0 + 0 ENSG00000088766.11 protein_coding CRLS1 2 OTTHUMG00000031823.4 +39538 chr20 HAVANA gene 6040778 6054049 2692.0 - 0 ENSG00000125872.7 protein_coding LRRN4 2 OTTHUMG00000031825.2 +39539 chr20 HAVANA gene 6065966 6067897 1932.0 - 0 ENSG00000278192.1 lincRNA AL118505.1 2 OTTHUMG00000186613.2 +39540 chr20 HAVANA gene 6074845 6123544 5359.0 - 0 ENSG00000101311.15 protein_coding FERMT1 2 OTTHUMG00000031826.4 +39541 chr20 HAVANA gene 6200989 6202191 1203.0 - 0 ENSG00000233402.1 processed_pseudogene TARDBPP1 1 OTTHUMG00000031829.1 pseudo_consens +39542 chr20 HAVANA gene 6213699 6215381 1683.0 + 0 ENSG00000234241.1 processed_pseudogene AL109618.1 1 OTTHUMG00000031830.1 pseudo_consens +39543 chr20 HAVANA gene 6219199 6219443 211.0 + 0 ENSG00000271565.1 processed_pseudogene AL109618.2 1 OTTHUMG00000184903.1 pseudo_consens +39544 chr20 HAVANA gene 6220330 6220759 430.0 + 0 ENSG00000276915.1 processed_pseudogene AL109618.3 2 OTTHUMG00000187958.1 +39545 chr20 HAVANA gene 6446723 6528459 1484.0 + 0 ENSG00000229876.1 lincRNA CASC20 2 OTTHUMG00000031831.1 +39546 chr20 HAVANA gene 6731258 6736136 932.0 - 0 ENSG00000228482.1 lincRNA LINC01713 1 OTTHUMG00000031832.1 +39547 chr20 HAVANA gene 6767664 6780280 3601.0 + 0 ENSG00000125845.6 protein_coding BMP2 2 OTTHUMG00000031833.3 retrogene +39548 chr20 HAVANA gene 7069614 7146656 381.0 + 0 ENSG00000232271.1 lincRNA AL096799.1 2 OTTHUMG00000031835.1 +39549 chr20 HAVANA gene 7146467 7254202 874.0 - 0 ENSG00000228888.1 lincRNA LINC01428 2 OTTHUMG00000031836.1 +39550 chr20 HAVANA gene 7256580 7258214 388.0 - 0 ENSG00000238102.1 lincRNA AL080248.1 1 OTTHUMG00000031837.1 +39551 chr20 HAVANA gene 7302056 7307432 1770.0 - 0 ENSG00000261249.1 lincRNA LINC01751 2 OTTHUMG00000175573.1 +39552 chr20 HAVANA gene 7347467 7367632 748.0 + 0 ENSG00000224711.1 lincRNA LINC01706 2 OTTHUMG00000031838.1 +39553 chr20 ENSEMBL gene 7371608 7371692 85.0 + 0 ENSG00000278159.1 miRNA MIR8062 3 +39554 chr20 ENSEMBL gene 7633562 7633851 290.0 - 0 ENSG00000240584.3 misc_RNA RN7SL547P 3 +39555 chr20 HAVANA gene 7831798 7832322 525.0 - 0 ENSG00000215586.2 processed_pseudogene AL031679.1 1 OTTHUMG00000031839.1 pseudo_consens +39556 chr20 HAVANA gene 7867327 7867614 288.0 + 0 ENSG00000277315.1 processed_pseudogene AL021879.1 2 OTTHUMG00000187960.1 +39557 chr20 HAVANA gene 7882981 7940474 1777.0 - 0 ENSG00000101323.4 protein_coding HAO1 2 OTTHUMG00000031841.2 +39558 chr20 HAVANA gene 7977348 8019829 6579.0 - 0 ENSG00000125827.8 protein_coding TMX4 1 OTTHUMG00000031843.4 +39559 chr20 HAVANA gene 8019223 8043512 2294.0 + 0 ENSG00000229766.6 antisense AL021396.1 1 OTTHUMG00000031842.2 +39560 chr20 HAVANA gene 8097824 8099774 1951.0 - 0 ENSG00000226262.1 processed_pseudogene PHKBP1 1 OTTHUMG00000031845.1 pseudo_consens +39561 chr20 HAVANA gene 8248704 8256918 558.0 + 0 ENSG00000225479.1 sense_intronic PLCB1-IT1 1 OTTHUMG00000031846.1 overlapping_locus +39562 chr20 ENSEMBL gene 8831186 8831393 208.0 + 0 ENSG00000201348.1 snoRNA RNU105B 3 +39563 chr20 HAVANA gene 8929895 8930038 144.0 - 0 ENSG00000228438.1 processed_pseudogene AL445567.1 2 OTTHUMG00000031848.1 +39564 chr20 HAVANA gene 8934984 8935481 498.0 - 0 ENSG00000276385.1 processed_pseudogene AL445567.2 2 OTTHUMG00000187964.1 +39565 chr20 HAVANA gene 8077251 8968360 17412.0 + 0 ENSG00000182621.17 protein_coding PLCB1 2 OTTHUMG00000031849.12 ncRNA_host,overlapping_locus +39566 chr20 ENSEMBL gene 8998849 8999100 252.0 + 0 ENSG00000275222.1 misc_RNA RF00017 3 +39567 chr20 HAVANA gene 9068763 9481242 6900.0 + 0 ENSG00000101333.16 protein_coding PLCB4 2 OTTHUMG00000031853.4 +39568 chr20 HAVANA gene 9505180 9514998 1928.0 - 0 ENSG00000225988.1 antisense LAMP5-AS1 2 OTTHUMG00000031850.1 +39569 chr20 HAVANA gene 9514358 9530524 2042.0 + 0 ENSG00000125869.9 protein_coding LAMP5 2 OTTHUMG00000031851.3 +39570 chr20 HAVANA gene 9575608 9577689 465.0 + 0 ENSG00000232738.1 antisense AL353612.1 1 OTTHUMG00000031855.1 +39571 chr20 HAVANA gene 9537389 9839041 4929.0 - 0 ENSG00000101349.16 protein_coding PAK5 2 OTTHUMG00000031857.1 +39572 chr20 HAVANA gene 9986088 10007116 1036.0 + 0 ENSG00000243961.2 lincRNA PARAL1 1 OTTHUMG00000031858.1 overlapping_locus +39573 chr20 ENSEMBL gene 10025917 10026168 252.0 + 0 ENSG00000276525.1 misc_RNA RF00017 3 +39574 chr20 HAVANA gene 9986126 10058303 5815.0 + 0 ENSG00000132623.15 protein_coding ANKEF1 2 OTTHUMG00000031860.4 ncRNA_host,overlapping_locus +39575 chr20 HAVANA gene 10180235 10185775 446.0 + 0 ENSG00000232448.1 lincRNA AL354824.2 1 OTTHUMG00000031861.1 overlapping_locus +39576 chr20 HAVANA gene 10173520 10196990 349.0 + 0 ENSG00000230506.1 lincRNA AL354824.1 1 OTTHUMG00000031862.1 overlapping_locus +39577 chr20 HAVANA gene 10218830 10307418 3357.0 + 0 ENSG00000132639.12 protein_coding SNAP25 2 OTTHUMG00000031863.3 +39578 chr20 HAVANA gene 10334419 10334698 280.0 + 0 ENSG00000237005.1 processed_pseudogene HIGD1AP15 1 OTTHUMG00000031865.2 pseudo_consens +39579 chr20 HAVANA gene 10349157 10349628 472.0 - 0 ENSG00000214835.3 processed_pseudogene RPL23AP6 1 OTTHUMG00000031864.1 pseudo_consens,overlapping_locus +39580 chr20 HAVANA gene 10021978 10368776 5440.0 - 0 ENSG00000227906.7 antisense SNAP25-AS1 2 OTTHUMG00000031867.5 overlapping_locus +39581 chr20 HAVANA gene 10385779 10387806 2028.0 + 0 ENSG00000230750.1 processed_pseudogene SDAD1P2 1 OTTHUMG00000031870.1 pseudo_consens +39582 chr20 HAVANA gene 10420546 10420737 192.0 - 0 ENSG00000285723.1 protein_coding AL034430.2 2 OTTHUMG00000031868.6 overlapping_locus +39583 chr20 HAVANA gene 10413520 10431922 882.0 - 0 ENSG00000285508.1 protein_coding AL034430.1 2 OTTHUMG00000192621.1 overlapping_locus +39584 chr20 HAVANA gene 10401009 10434222 6953.0 - 0 ENSG00000125863.19 protein_coding MKKS 2 OTTHUMG00000192571.1 overlapping_locus +39585 chr20 HAVANA gene 10612861 10614229 1369.0 - 0 ENSG00000235036.4 processed_pseudogene AL035456.1 1 OTTHUMG00000031874.2 pseudo_consens +39586 chr20 HAVANA gene 10435303 10636829 6492.0 + 0 ENSG00000149346.14 protein_coding SLX4IP 2 OTTHUMG00000031873.5 +39587 chr20 ENSEMBL gene 10649636 10649695 60.0 - 0 ENSG00000273745.1 miRNA MIR6870 3 +39588 chr20 HAVANA gene 10637684 10673999 9298.0 - 0 ENSG00000101384.12 protein_coding JAG1 2 OTTHUMG00000031872.6 ncRNA_host +39589 chr20 HAVANA gene 10753090 10753966 438.0 + 0 ENSG00000224961.1 lincRNA LINC01752 2 OTTHUMG00000031876.2 overlapping_locus +39590 chr20 HAVANA gene 10753278 10765286 729.0 - 0 ENSG00000234900.1 lincRNA AL135937.1 2 OTTHUMG00000031877.1 +39591 chr20 HAVANA gene 10888582 10889088 507.0 - 0 ENSG00000217809.1 processed_pseudogene FAT1P1 2 OTTHUMG00000031878.1 overlapping_locus +39592 chr20 HAVANA gene 10875333 10909272 2006.0 - 0 ENSG00000232900.1 lincRNA AL050403.1 2 OTTHUMG00000031880.1 overlapping_locus +39593 chr20 HAVANA gene 10672928 10994924 1279.0 + 0 ENSG00000270792.5 antisense AL050403.2 2 OTTHUMG00000185195.1 overlapping_locus +39594 chr20 HAVANA gene 11001304 11001763 460.0 + 0 ENSG00000270777.1 lincRNA AL158042.1 2 OTTHUMG00000185231.1 +39595 chr20 HAVANA gene 11027760 11029366 446.0 + 0 ENSG00000125899.7 lincRNA C20orf187 2 OTTHUMG00000031881.1 +39596 chr20 HAVANA gene 11234170 11301525 1433.0 - 0 ENSG00000230990.1 lincRNA AL049649.1 1 OTTHUMG00000031883.1 +39597 chr20 HAVANA gene 11345383 11345855 473.0 - 0 ENSG00000235544.1 processed_pseudogene RPS11P1 1 OTTHUMG00000031884.1 pseudo_consens +39598 chr20 HAVANA gene 11536406 11541647 295.0 - 0 ENSG00000282478.1 lincRNA AL109837.2 2 OTTHUMG00000191458.1 +39599 chr20 HAVANA gene 11608436 11609048 613.0 - 0 ENSG00000271397.1 processed_pseudogene AL109837.1 1 OTTHUMG00000184928.1 pseudo_consens +39600 chr20 HAVANA gene 11621051 11621477 427.0 + 0 ENSG00000237256.1 processed_pseudogene PGAM3P 1 OTTHUMG00000031885.1 pseudo_consens +39601 chr20 HAVANA gene 11685144 11687323 2180.0 - 0 ENSG00000261411.1 lincRNA AL161938.1 2 OTTHUMG00000175627.1 +39602 chr20 ENSEMBL gene 11818821 11819091 271.0 - 0 ENSG00000222281.1 misc_RNA RN7SKP111 3 +39603 chr20 HAVANA gene 11838355 11838574 220.0 + 0 ENSG00000271298.1 processed_pseudogene AL080274.1 1 OTTHUMG00000184901.1 pseudo_consens +39604 chr20 HAVANA gene 11800463 11870715 1078.0 - 0 ENSG00000228422.3 lincRNA LINC00687 2 OTTHUMG00000031887.3 ncRNA_host +39605 chr20 HAVANA gene 11909404 11918677 1831.0 - 0 ENSG00000236526.1 antisense AL035448.1 2 OTTHUMG00000031890.1 +39606 chr20 HAVANA gene 11890723 11926609 6228.0 + 0 ENSG00000132640.14 protein_coding BTBD3 2 OTTHUMG00000031889.5 +39607 chr20 HAVANA gene 12243895 12244296 280.0 - 0 ENSG00000235292.1 lincRNA AL109838.1 2 OTTHUMG00000031891.1 +39608 chr20 HAVANA gene 12305613 12316485 473.0 - 0 ENSG00000230437.1 lincRNA AL136460.1 2 OTTHUMG00000031892.1 +39609 chr20 HAVANA gene 12380056 12381255 1200.0 + 0 ENSG00000235698.1 processed_pseudogene PA2G4P2 1 OTTHUMG00000031893.1 pseudo_consens +39610 chr20 HAVANA gene 12934877 12935783 907.0 - 0 ENSG00000269931.1 lincRNA AL078623.1 2 OTTHUMG00000184071.2 overlapping_locus +39611 chr20 HAVANA gene 12950338 12951627 601.0 + 0 ENSG00000234265.1 lincRNA LINC01723 1 OTTHUMG00000031895.1 +39612 chr20 HAVANA gene 12865202 12952519 3033.0 - 0 ENSG00000233048.1 lincRNA LINC01722 2 OTTHUMG00000031897.1 overlapping_locus +39613 chr20 HAVANA gene 13073667 13074312 646.0 - 0 ENSG00000271426.1 processed_pseudogene AL109983.1 1 OTTHUMG00000184923.1 pseudo_consens +39614 chr20 HAVANA gene 13008979 13169103 8520.0 + 0 ENSG00000172296.12 protein_coding SPTLC3 2 OTTHUMG00000031899.4 +39615 chr20 HAVANA gene 13237801 13239674 652.0 - 0 ENSG00000226263.1 antisense ISM1-AS1 1 OTTHUMG00000031900.1 +39616 chr20 HAVANA gene 13244064 13245369 446.0 - 0 ENSG00000225956.1 antisense AL050320.1 1 OTTHUMG00000031898.1 +39617 chr20 HAVANA gene 13221771 13300651 2593.0 + 0 ENSG00000101230.5 protein_coding ISM1 2 OTTHUMG00000031902.2 +39618 chr20 HAVANA gene 13368291 13368703 413.0 - 0 ENSG00000278153.1 lincRNA AL121782.1 2 OTTHUMG00000186699.1 +39619 chr20 HAVANA gene 13392677 13393674 998.0 + 0 ENSG00000236811.1 processed_pseudogene GAPDHP2 1 OTTHUMG00000031903.1 pseudo_consens +39620 chr20 HAVANA gene 13389392 13638940 2905.0 - 0 ENSG00000089123.15 protein_coding TASP1 2 OTTHUMG00000031904.3 +39621 chr20 HAVANA gene 13714322 13784886 3216.0 - 0 ENSG00000089048.14 protein_coding ESF1 2 OTTHUMG00000031906.1 +39622 chr20 HAVANA gene 13784950 13821582 7217.0 + 0 ENSG00000101247.17 protein_coding NDUFAF5 2 OTTHUMG00000031909.7 +39623 chr20 ENSEMBL gene 13973316 13973424 109.0 - 0 ENSG00000212247.1 snRNA RNU6-278P 3 +39624 chr20 HAVANA gene 13849247 13996443 3884.0 - 0 ENSG00000101251.12 protein_coding SEL1L2 2 OTTHUMG00000031910.5 ncRNA_host +39625 chr20 HAVANA gene 14003508 14003699 192.0 + 0 ENSG00000230935.1 processed_pseudogene RPS3P1 1 OTTHUMG00000031912.1 pseudo_consens,overlapping_locus +39626 chr20 HAVANA gene 14127400 14128336 937.0 + 0 ENSG00000234187.1 processed_pseudogene AIMP1P1 1 OTTHUMG00000031913.1 pseudo_consens,overlapping_locus +39627 chr20 ENSEMBL gene 14223041 14223325 285.0 + 0 ENSG00000239923.3 misc_RNA RN7SL864P 3 +39628 chr20 HAVANA gene 14322988 14337616 5190.0 - 0 ENSG00000125848.9 protein_coding FLRT3 2 OTTHUMG00000031914.1 +39629 chr20 ENSEMBL gene 14352320 14352425 106.0 + 0 ENSG00000199570.1 snRNA RNU6-228P 3 +39630 chr20 HAVANA gene 14547184 14547623 440.0 - 0 ENSG00000227563.1 processed_pseudogene RNF11P2 1 OTTHUMG00000031916.1 pseudo_consens +39631 chr20 HAVANA gene 14554384 14636524 1004.0 + 0 ENSG00000227927.2 sense_intronic MACROD2-IT1 1 OTTHUMG00000031917.4 overlapping_locus +39632 chr20 HAVANA gene 14757563 14758056 494.0 + 0 ENSG00000213950.2 processed_pseudogene RPS10P2 1 OTTHUMG00000031918.1 pseudo_consens,overlapping_locus +39633 chr20 HAVANA gene 14884253 14929515 1781.0 - 0 ENSG00000235914.1 antisense MACROD2-AS1 2 OTTHUMG00000031920.1 +39634 chr20 HAVANA gene 14933843 14935363 371.0 - 0 ENSG00000237832.1 antisense AL138808.1 2 OTTHUMG00000031921.1 +39635 chr20 ENSEMBL gene 15021553 15021659 107.0 - 0 ENSG00000199803.1 snRNA RNU6-1159P 3 +39636 chr20 ENSEMBL gene 15022852 15022958 107.0 + 0 ENSG00000201180.1 snRNA RNU6-115P 3 +39637 chr20 ENSEMBL gene 15280764 15280873 110.0 - 0 ENSG00000222500.1 rRNA_pseudogene RNA5SP475 3 +39638 chr20 HAVANA gene 15552157 15552885 519.0 - 0 ENSG00000225181.1 antisense AL121584.1 2 OTTHUMG00000031922.2 +39639 chr20 HAVANA gene 15619494 15619819 326.0 - 0 ENSG00000224274.1 processed_pseudogene ENSAP1 1 OTTHUMG00000031923.1 pseudo_consens +39640 chr20 HAVANA gene 13995369 16053197 11344.0 + 0 ENSG00000172264.17 protein_coding MACROD2 1 OTTHUMG00000031919.9 ncRNA_host,overlapping_locus +39641 chr20 HAVANA gene 16223750 16224535 471.0 - 0 ENSG00000225622.1 processed_pseudogene PPIAP17 1 OTTHUMG00000031926.1 pseudo_consens +39642 chr20 HAVANA gene 16272104 16573434 7721.0 - 0 ENSG00000089177.18 protein_coding KIF16B 2 OTTHUMG00000031927.4 +39643 chr20 HAVANA gene 16576068 16579615 774.0 + 0 ENSG00000273998.1 lincRNA AL049794.1 2 OTTHUMG00000186702.1 +39644 chr20 HAVANA gene 16580258 16580622 365.0 + 0 ENSG00000275728.1 lincRNA AL049794.2 2 OTTHUMG00000186703.1 +39645 chr20 HAVANA gene 16586333 16586693 361.0 - 0 ENSG00000226229.2 processed_pseudogene RPLP0P1 1 OTTHUMG00000031929.1 pseudo_consens +39646 chr20 ENSEMBL gene 16670641 16670742 102.0 - 0 ENSG00000200494.1 misc_RNA RF00019 3 +39647 chr20 HAVANA gene 16684108 16684404 297.0 - 0 ENSG00000235208.2 processed_pseudogene AL135938.1 2 OTTHUMG00000031930.2 +39648 chr20 HAVANA gene 16714844 16730948 1700.0 - 0 ENSG00000228809.2 processed_transcript AL034428.1 2 OTTHUMG00000031932.2 +39649 chr20 HAVANA gene 16729961 16742563 2607.0 + 0 ENSG00000125870.10 protein_coding SNRPB2 2 OTTHUMG00000031933.3 +39650 chr20 HAVANA gene 16748358 16770062 2198.0 + 0 ENSG00000125879.4 protein_coding OTOR 2 OTTHUMG00000031931.3 +39651 chr20 HAVANA gene 16857962 16864148 833.0 - 0 ENSG00000236985.1 lincRNA AL121892.1 2 OTTHUMG00000031936.1 +39652 chr20 ENSEMBL gene 16982831 16983033 203.0 - 0 ENSG00000212165.2 snoRNA RF00012 3 +39653 chr20 ENSEMBL gene 17187510 17187616 107.0 + 0 ENSG00000251955.1 snRNA RNU6-27P 3 +39654 chr20 HAVANA gene 17188134 17188344 211.0 + 0 ENSG00000220540.1 processed_pseudogene AL359511.1 2 OTTHUMG00000031937.3 +39655 chr20 ENSEMBL gene 17209060 17209220 161.0 + 0 ENSG00000238833.1 snRNA RNU1-131P 3 +39656 chr20 HAVANA gene 17479085 17479431 347.0 - 0 ENSG00000232241.1 processed_pseudogene DYNLT3P1 1 OTTHUMG00000031939.1 pseudo_consens +39657 chr20 HAVANA gene 17226107 17484578 7078.0 + 0 ENSG00000125851.9 protein_coding PCSK2 2 OTTHUMG00000031941.5 +39658 chr20 HAVANA gene 17516843 17517307 465.0 + 0 ENSG00000232333.1 processed_pseudogene RPS27AP2 1 OTTHUMG00000031943.1 pseudo_consens +39659 chr20 HAVANA gene 17565501 17565851 351.0 - 0 ENSG00000277373.1 sense_intronic AL132765.2 2 OTTHUMG00000186704.1 overlapping_locus +39660 chr20 HAVANA gene 17493905 17569220 3361.0 - 0 ENSG00000125864.13 protein_coding BFSP1 2 OTTHUMG00000031940.10 overlapping_locus +39661 chr20 ENSEMBL gene 17576206 17576510 305.0 - 0 ENSG00000202260.1 misc_RNA RN7SKP69 3 +39662 chr20 HAVANA gene 17599255 17599807 553.0 - 0 ENSG00000230495.1 processed_pseudogene AL132765.1 1 OTTHUMG00000031944.1 pseudo_consens +39663 chr20 HAVANA gene 17569863 17609919 3851.0 + 0 ENSG00000125868.15 protein_coding DSTN 2 OTTHUMG00000031947.9 +39664 chr20 HAVANA gene 17613678 17682295 6980.0 - 0 ENSG00000125844.15 protein_coding RRBP1 2 OTTHUMG00000031945.12 +39665 chr20 HAVANA gene 17693672 17735871 1358.0 + 0 ENSG00000125888.14 protein_coding BANF2 2 OTTHUMG00000031949.8 +39666 chr20 HAVANA gene 17887363 17888160 632.0 - 0 ENSG00000233625.1 lincRNA AL035045.1 2 OTTHUMG00000031951.1 +39667 chr20 ENSEMBL gene 17903762 17903861 100.0 + 0 ENSG00000212555.1 snRNA RNU6-192P 3 +39668 chr20 ENSEMBL gene 17962710 17962946 237.0 - 0 ENSG00000212232.1 snoRNA SNORD17 3 +39669 chr20 HAVANA gene 17941597 17968980 7953.0 - 0 ENSG00000089006.16 protein_coding SNX5 2 OTTHUMG00000031953.10 ncRNA_host,overlapping_locus +39670 chr20 HAVANA gene 17968913 17991122 2336.0 + 0 ENSG00000125871.13 protein_coding MGME1 2 OTTHUMG00000031955.2 +39671 chr20 HAVANA gene 18011955 18012284 330.0 + 0 ENSG00000218902.3 processed_pseudogene PTMAP3 2 OTTHUMG00000031954.3 +39672 chr20 HAVANA gene 17956979 18059188 2175.0 - 0 ENSG00000125850.10 protein_coding OVOL2 2 OTTHUMG00000031960.7 ncRNA_host,overlapping_locus +39673 chr20 HAVANA gene 18059493 18071008 400.0 + 0 ENSG00000229262.1 antisense AL160411.1 1 OTTHUMG00000031958.1 +39674 chr20 HAVANA gene 18090116 18090715 600.0 - 0 ENSG00000227343.1 processed_pseudogene RPL15P1 1 OTTHUMG00000031959.1 pseudo_consens +39675 chr20 ENSEMBL gene 18095571 18095632 62.0 - 0 ENSG00000252597.1 snRNA RNU7-137P 3 +39676 chr20 ENSEMBL gene 18113467 18113579 113.0 - 0 ENSG00000207282.1 misc_RNA RF00019 3 +39677 chr20 HAVANA gene 18137873 18143169 1141.0 + 0 ENSG00000232838.3 protein_coding PET117 2 OTTHUMG00000186019.1 overlapping_locus +39678 chr20 HAVANA gene 18138118 18188387 4251.0 + 0 ENSG00000149474.13 protein_coding KAT14 1 OTTHUMG00000031962.13 overlapping_locus +39679 chr20 HAVANA gene 18220113 18220512 400.0 + 0 ENSG00000232943.1 processed_pseudogene AL050321.1 1 OTTHUMG00000031963.2 pseudo_consens +39680 chr20 ENSEMBL gene 18258554 18258851 298.0 - 0 ENSG00000266720.2 misc_RNA RN7SL14P 3 +39681 chr20 ENSEMBL gene 18265690 18265879 190.0 - 0 ENSG00000252635.1 snRNA RNU2-56P 3 +39682 chr20 ENSEMBL gene 18295143 18295451 309.0 - 0 ENSG00000199719.1 misc_RNA RN7SKP74 3 +39683 chr20 HAVANA gene 18313765 18315111 258.0 - 0 ENSG00000237259.1 antisense AL049646.2 2 OTTHUMG00000031966.1 +39684 chr20 HAVANA gene 18288283 18316996 5426.0 + 0 ENSG00000125846.15 protein_coding ZNF133 2 OTTHUMG00000031965.6 +39685 chr20 HAVANA gene 18322552 18359300 2548.0 - 0 ENSG00000230010.1 lincRNA AL049646.1 2 OTTHUMG00000057435.1 +39686 chr20 HAVANA gene 18379049 18381484 734.0 + 0 ENSG00000237282.3 antisense LINC00851 2 OTTHUMG00000057443.1 +39687 chr20 HAVANA gene 18420160 18421454 1295.0 - 0 ENSG00000236474.1 processed_pseudogene GCNT1P1 1 OTTHUMG00000031974.4 pseudo_consens,overlapping_locus +39688 chr20 ENSEMBL gene 18433842 18433944 103.0 + 0 ENSG00000252422.1 rRNA_pseudogene RNA5SP476 3 +39689 chr20 HAVANA gene 18383367 18467281 6619.0 - 0 ENSG00000089091.16 protein_coding DZANK1 2 OTTHUMG00000031968.7 overlapping_locus +39690 chr20 ENSEMBL gene 18470615 18470691 77.0 + 0 ENSG00000265137.3 miRNA MIR3192 3 +39691 chr20 HAVANA gene 18467127 18484643 2928.0 + 0 ENSG00000132664.11 protein_coding POLR3F 2 OTTHUMG00000031971.3 ncRNA_host +39692 chr20 HAVANA gene 18485265 18486052 478.0 + 0 ENSG00000225419.1 processed_pseudogene RPL21P3 1 OTTHUMG00000031969.1 pseudo_consens +39693 chr20 HAVANA gene 18486540 18497243 3861.0 - 0 ENSG00000089050.15 protein_coding RBBP9 2 OTTHUMG00000031972.4 +39694 chr20 HAVANA gene 18504633 18505066 434.0 + 0 ENSG00000214612.3 processed_pseudogene RPS19P1 1 OTTHUMG00000031973.1 pseudo_consens +39695 chr20 HAVANA gene 18507482 18561415 4385.0 + 0 ENSG00000101310.16 protein_coding SEC23B 2 OTTHUMG00000031976.13 +39696 chr20 HAVANA gene 18567347 18569563 1098.0 + 0 ENSG00000232388.4 protein_coding SMIM26 1 OTTHUMG00000031978.8 overlapping_locus +39697 chr20 ENSEMBL gene 18592330 18592619 290.0 + 0 ENSG00000243702.3 misc_RNA RN7SL638P 3 +39698 chr20 ENSEMBL gene 18611047 18611167 121.0 - 0 ENSG00000221806.1 snRNA RNU6ATAC34P 3 +39699 chr20 HAVANA gene 18642782 18643634 689.0 - 0 ENSG00000232136.2 processed_pseudogene DUXAP7 1 OTTHUMG00000031979.3 pseudo_consens +39700 chr20 HAVANA gene 18674395 18698709 1695.0 - 0 ENSG00000233993.1 antisense AL121900.1 2 OTTHUMG00000046204.1 +39701 chr20 HAVANA gene 18567453 18744216 695.0 + 0 ENSG00000284776.1 protein_coding AL121900.2 2 OTTHUMG00000192413.1 ncRNA_host +39702 chr20 HAVANA gene 18587893 18766644 6465.0 + 0 ENSG00000125821.12 protein_coding DTD1 2 OTTHUMG00000031980.9 ncRNA_host,overlapping_locus +39703 chr20 HAVANA gene 18782424 18783690 1267.0 - 0 ENSG00000233324.1 processed_pseudogene EEF1A1P34 1 OTTHUMG00000031987.1 pseudo_consens +39704 chr20 HAVANA gene 18786065 18794335 3859.0 - 0 ENSG00000179935.9 lincRNA LINC00652 2 OTTHUMG00000031986.4 +39705 chr20 HAVANA gene 18794529 18796067 1539.0 + 0 ENSG00000273148.1 lincRNA AL035563.1 2 OTTHUMG00000186033.1 +39706 chr20 HAVANA gene 18813726 18814392 667.0 + 0 ENSG00000132631.5 protein_coding SCP2D1 2 OTTHUMG00000031983.1 retrogene +39707 chr20 HAVANA gene 18809728 18830153 738.0 - 0 ENSG00000149443.7 sense_overlapping C20orf78 1 OTTHUMG00000031982.4 +39708 chr20 HAVANA gene 19000709 19056796 998.0 - 0 ENSG00000274863.1 lincRNA AL135936.1 2 OTTHUMG00000186706.1 +39709 chr20 HAVANA gene 19212852 19213477 366.0 - 0 ENSG00000235996.1 antisense AL136090.1 2 OTTHUMG00000031988.1 +39710 chr20 HAVANA gene 19242302 19284596 1789.0 - 0 ENSG00000179447.2 antisense AL049647.1 2 OTTHUMG00000031990.1 +39711 chr20 HAVANA gene 19693209 19697576 2464.0 - 0 ENSG00000232675.7 processed_transcript AL121830.1 1 OTTHUMG00000031991.3 +39712 chr20 HAVANA gene 19212646 19722937 3933.0 + 0 ENSG00000185052.11 protein_coding SLC24A3 2 OTTHUMG00000031993.4 +39713 chr20 HAVANA gene 19756390 19758037 1648.0 - 0 ENSG00000268628.2 lincRNA AL121761.1 2 OTTHUMG00000186707.1 +39714 chr20 HAVANA gene 19823443 19823943 501.0 - 0 ENSG00000236992.2 processed_pseudogene RPL12P12 2 OTTHUMG00000031995.1 +39715 chr20 HAVANA gene 19757606 20002459 8273.0 + 0 ENSG00000132669.13 protein_coding RIN2 2 OTTHUMG00000031996.3 +39716 chr20 HAVANA gene 20017116 20033655 2376.0 + 0 ENSG00000173418.11 protein_coding NAA20 1 OTTHUMG00000031998.4 +39717 chr20 HAVANA gene 20034368 20056046 4567.0 - 0 ENSG00000101343.14 protein_coding CRNKL1 2 OTTHUMG00000032000.4 +39718 chr20 HAVANA gene 20094401 20095684 433.0 - 0 ENSG00000241054.1 antisense AL035454.1 2 OTTHUMG00000159257.1 +39719 chr20 HAVANA gene 20214299 20215262 282.0 - 0 ENSG00000225417.1 antisense AL049648.1 1 OTTHUMG00000032002.1 +39720 chr20 HAVANA gene 20253303 20253838 536.0 - 0 ENSG00000229500.1 processed_pseudogene RPL17P1 1 OTTHUMG00000032003.1 pseudo_consens +39721 chr20 HAVANA gene 20258407 20267809 568.0 - 0 ENSG00000243810.1 antisense AL121721.1 2 OTTHUMG00000159256.1 +39722 chr20 ENSEMBL gene 20316755 20316994 240.0 + 0 ENSG00000264879.2 misc_RNA RN7SL690P 3 +39723 chr20 HAVANA gene 20052514 20360702 7322.0 + 0 ENSG00000089101.17 protein_coding CFAP61 1 OTTHUMG00000032006.8 ncRNA_host +39724 chr20 HAVANA gene 20363691 20365657 1967.0 + 0 ENSG00000280229.1 TEC AL161658.1 2 OTTHUMG00000175631.1 +39725 chr20 HAVANA gene 20368121 20370949 2829.0 + 0 ENSG00000173404.4 protein_coding INSM1 2 OTTHUMG00000032004.1 +39726 chr20 HAVANA gene 20659710 20659964 255.0 + 0 ENSG00000213384.2 processed_pseudogene EIF4E2P1 1 OTTHUMG00000032008.2 pseudo_consens +39727 chr20 HAVANA gene 20389552 20712488 11366.0 - 0 ENSG00000188559.14 protein_coding RALGAPA2 2 OTTHUMG00000032010.4 +39728 chr20 HAVANA gene 20721187 20721879 367.0 + 0 ENSG00000270793.1 processed_pseudogene LLPHP1 1 OTTHUMG00000184891.1 pseudo_consens +39729 chr20 ENSEMBL gene 20738433 20738731 299.0 - 0 ENSG00000278525.1 misc_RNA RN7SL607P 3 +39730 chr20 HAVANA gene 20854121 20854642 522.0 - 0 ENSG00000225803.1 processed_pseudogene MRPS11P1 1 OTTHUMG00000032012.1 pseudo_consens +39731 chr20 HAVANA gene 20970448 20972562 512.0 + 0 ENSG00000234104.1 lincRNA AL133465.1 1 OTTHUMG00000032013.1 +39732 chr20 HAVANA gene 21089696 21090509 670.0 + 0 ENSG00000283405.1 lincRNA AL121759.2 2 OTTHUMG00000191714.1 +39733 chr20 HAVANA gene 21087604 21106358 1735.0 - 0 ENSG00000225127.2 lincRNA LINC00237 1 OTTHUMG00000032017.2 +39734 chr20 HAVANA gene 21114723 21115197 475.0 + 0 ENSG00000235065.1 processed_pseudogene RPL24P2 1 OTTHUMG00000032015.1 pseudo_consens +39735 chr20 ENSEMBL gene 21138956 21139074 119.0 - 0 ENSG00000199509.1 rRNA_pseudogene RNA5SP477 3 +39736 chr20 HAVANA gene 21148741 21162890 1110.0 - 0 ENSG00000228604.3 antisense AL121759.1 1 OTTHUMG00000032014.3 overlapping_locus +39737 chr20 HAVANA gene 21166206 21166596 391.0 - 0 ENSG00000214535.3 processed_pseudogene RPS15AP1 1 OTTHUMG00000032016.2 pseudo_consens,overlapping_locus +39738 chr20 HAVANA gene 21154023 21218289 5451.0 - 0 ENSG00000232712.6 antisense KIZ-AS1 2 OTTHUMG00000032018.3 overlapping_locus +39739 chr20 HAVANA gene 21125983 21246622 5207.0 + 0 ENSG00000088970.15 protein_coding KIZ 2 OTTHUMG00000032020.5 +39740 chr20 HAVANA gene 21265854 21266465 612.0 + 0 ENSG00000226875.1 unprocessed_pseudogene ZNF877P 2 OTTHUMG00000032019.1 +39741 chr20 HAVANA gene 21302731 21303704 974.0 - 0 ENSG00000275457.1 antisense AL117332.1 2 OTTHUMG00000186716.1 +39742 chr20 HAVANA gene 21303304 21389827 3437.0 + 0 ENSG00000088930.7 protein_coding XRN2 2 OTTHUMG00000032025.3 +39743 chr20 HAVANA gene 21395367 21398028 2238.0 - 0 ENSG00000125816.4 protein_coding NKX2-4 2 OTTHUMG00000032022.2 +39744 chr20 HAVANA gene 21397818 21400391 615.0 + 0 ENSG00000225280.6 antisense AL158013.1 2 OTTHUMG00000032023.2 +39745 chr20 ENSEMBL gene 21424758 21425041 284.0 - 0 ENSG00000223128.1 misc_RNA RN7SKP140 3 +39746 chr20 HAVANA gene 21488244 21488625 382.0 - 0 ENSG00000226405.1 processed_pseudogene AL133325.1 1 OTTHUMG00000032027.1 pseudo_consens +39747 chr20 HAVANA gene 21501395 21501968 574.0 + 0 ENSG00000227693.1 processed_pseudogene GSTM3P1 1 OTTHUMG00000032028.1 pseudo_consens +39748 chr20 HAVANA gene 21499261 21502934 3674.0 - 0 ENSG00000278041.1 lincRNA AL133325.3 2 OTTHUMG00000186718.1 +39749 chr20 HAVANA gene 21511447 21512309 638.0 + 0 ENSG00000258197.1 antisense NKX2-2-AS1 2 OTTHUMG00000187950.2 +39750 chr20 HAVANA gene 21511010 21514026 2092.0 - 0 ENSG00000125820.5 protein_coding NKX2-2 2 OTTHUMG00000170524.20 +39751 chr20 HAVANA gene 21530202 21530744 449.0 + 0 ENSG00000233492.1 lincRNA AL133325.2 2 OTTHUMG00000032029.1 +39752 chr20 ENSEMBL gene 21614978 21615435 458.0 + 0 ENSG00000278410.1 misc_RNA AL121590.1 3 +39753 chr20 HAVANA gene 21569976 21619674 2180.0 + 0 ENSG00000279082.3 lincRNA LINC01727 2 OTTHUMG00000189116.1 ncRNA_host +39754 chr20 HAVANA gene 21610787 21703585 1253.0 - 0 ENSG00000280350.1 lincRNA LINC01726 2 OTTHUMG00000189115.1 +39755 chr20 HAVANA gene 21705659 21718486 5855.0 + 0 ENSG00000125813.13 protein_coding PAX1 2 OTTHUMG00000032034.3 +39756 chr20 HAVANA gene 21742303 21743077 775.0 - 0 ENSG00000233015.1 processed_pseudogene SLC25A6P1 1 OTTHUMG00000032031.1 pseudo_consens +39757 chr20 HAVANA gene 21755270 21755350 81.0 + 0 ENSG00000227063.5 processed_pseudogene RPL41P1 2 OTTHUMG00000032033.1 +39758 chr20 HAVANA gene 21947647 21970783 569.0 + 0 ENSG00000238034.1 lincRNA AL109807.1 2 OTTHUMG00000032035.1 +39759 chr20 HAVANA gene 22054090 22074654 677.0 + 0 ENSG00000234435.2 lincRNA LINC01432 1 OTTHUMG00000032036.2 +39760 chr20 HAVANA gene 22220554 22223283 439.0 + 0 ENSG00000234862.1 lincRNA AL035258.1 2 OTTHUMG00000032037.1 +39761 chr20 HAVANA gene 22272052 22273454 1403.0 - 0 ENSG00000225170.2 processed_pseudogene AL049737.1 2 OTTHUMG00000032038.2 +39762 chr20 HAVANA gene 22263065 22284029 6319.0 - 0 ENSG00000225321.2 lincRNA LINC01427 2 OTTHUMG00000032039.2 +39763 chr20 HAVANA gene 22343693 22343930 238.0 - 0 ENSG00000270838.1 processed_pseudogene AL121912.1 1 OTTHUMG00000184926.1 pseudo_consens +39764 chr20 HAVANA gene 22371216 22471557 4533.0 - 0 ENSG00000204684.3 lincRNA AL133464.1 2 OTTHUMG00000032040.4 +39765 chr20 HAVANA gene 22547671 22578642 5552.0 - 0 ENSG00000259974.2 lincRNA LINC00261 2 OTTHUMG00000046240.2 overlapping_locus +39766 chr20 HAVANA gene 22560553 22584261 4849.0 - 0 ENSG00000283932.1 protein_coding AL121722.1 2 OTTHUMG00000032041.3 overlapping_locus +39767 chr20 HAVANA gene 22581005 22585455 2603.0 - 0 ENSG00000125798.14 protein_coding FOXA2 2 OTTHUMG00000191876.1 overlapping_locus +39768 chr20 HAVANA gene 22587522 22607517 659.0 - 0 ENSG00000237396.1 lincRNA LNCNEF 2 OTTHUMG00000032044.1 +39769 chr20 HAVANA gene 22668484 22685344 4346.0 - 0 ENSG00000230400.2 lincRNA LINC01747 2 OTTHUMG00000032047.2 +39770 chr20 HAVANA gene 22732802 22734089 1288.0 - 0 ENSG00000215553.3 processed_pseudogene KRT18P3 1 OTTHUMG00000032046.1 pseudo_consens +39771 chr20 HAVANA gene 22685391 22746107 2145.0 + 0 ENSG00000283072.1 lincRNA AL158175.1 2 OTTHUMG00000191568.2 +39772 chr20 HAVANA gene 22885670 22886068 399.0 - 0 ENSG00000213882.2 processed_pseudogene CYB5AP4 1 OTTHUMG00000032048.1 pseudo_consens +39773 chr20 HAVANA gene 22960534 22966063 2043.0 - 0 ENSG00000228935.1 processed_pseudogene AL353132.1 1 OTTHUMG00000032049.1 pseudo_consens +39774 chr20 HAVANA gene 23010209 23030785 719.0 - 0 ENSG00000230492.1 antisense AL049651.1 2 OTTHUMG00000032052.1 +39775 chr20 HAVANA gene 23035386 23036812 1427.0 + 0 ENSG00000132671.5 protein_coding SSTR4 2 OTTHUMG00000032054.1 overlapping_locus,retrogene +39776 chr20 HAVANA gene 23031542 23039236 559.0 + 0 ENSG00000234646.6 sense_overlapping AL049651.2 1 OTTHUMG00000032051.2 overlapping_locus +39777 chr20 HAVANA gene 23045633 23049741 4109.0 - 0 ENSG00000178726.6 protein_coding THBD 2 OTTHUMG00000032053.2 +39778 chr20 HAVANA gene 23071547 23072722 1176.0 - 0 ENSG00000279447.1 TEC AL118508.4 2 OTTHUMG00000175626.1 +39779 chr20 HAVANA gene 23079349 23086340 6708.0 - 0 ENSG00000125810.9 protein_coding CD93 2 OTTHUMG00000032058.2 +39780 chr20 HAVANA gene 23125068 23132621 1896.0 - 0 ENSG00000233746.1 lincRNA LINC00656 2 OTTHUMG00000133099.1 +39781 chr20 HAVANA gene 23148086 23149939 1854.0 + 0 ENSG00000279164.1 TEC AL118508.3 2 OTTHUMG00000175579.1 +39782 chr20 ENSEMBL gene 23160857 23160971 115.0 - 0 ENSG00000201527.1 rRNA_pseudogene RNA5SP478 3 +39783 chr20 HAVANA gene 23180176 23187544 673.0 + 0 ENSG00000275179.1 lincRNA AL118508.2 2 OTTHUMG00000186735.2 +39784 chr20 HAVANA gene 23187961 23190307 2347.0 + 0 ENSG00000230387.2 lincRNA AL118508.1 2 OTTHUMG00000032057.2 +39785 chr20 HAVANA gene 23320958 23325352 431.0 - 0 ENSG00000277901.1 lincRNA AL390037.1 2 OTTHUMG00000186736.1 +39786 chr20 HAVANA gene 23346941 23351486 814.0 - 0 ENSG00000234832.1 antisense AL096677.1 2 OTTHUMG00000032064.1 +39787 chr20 HAVANA gene 23350736 23354777 1123.0 + 0 ENSG00000132661.3 protein_coding NXT1 2 OTTHUMG00000032059.2 retrogene +39788 chr20 HAVANA gene 23356594 23358116 841.0 - 0 ENSG00000232645.5 lincRNA LINC01431 1 OTTHUMG00000032063.1 +39789 chr20 HAVANA gene 23362182 23373063 5463.0 + 0 ENSG00000125812.15 protein_coding GZF1 2 OTTHUMG00000032069.4 +39790 chr20 ENSEMBL gene 23380896 23381012 117.0 - 0 ENSG00000201728.1 rRNA_pseudogene RNA5SP479 3 +39791 chr20 HAVANA gene 23374519 23421519 5234.0 - 0 ENSG00000125814.17 protein_coding NAPB 2 OTTHUMG00000032062.2 +39792 chr20 HAVANA gene 23439685 23444930 1073.0 + 0 ENSG00000125823.12 protein_coding CSTL1 2 OTTHUMG00000032068.1 +39793 chr20 HAVANA gene 23450403 23452857 566.0 - 0 ENSG00000125831.9 protein_coding CST11 2 OTTHUMG00000032060.2 +39794 chr20 ENSEMBL gene 23457584 23457685 102.0 - 0 ENSG00000200208.1 misc_RNA RF00019 3 +39795 chr20 HAVANA gene 23458529 23459459 530.0 + 0 ENSG00000273838.1 lincRNA AL109954.2 2 OTTHUMG00000186737.1 +39796 chr20 HAVANA gene 23475700 23479798 362.0 + 0 ENSG00000226344.1 unprocessed_pseudogene CST12P 2 OTTHUMG00000032072.3 +39797 chr20 HAVANA gene 23489416 23489973 558.0 - 0 ENSG00000276638.1 lincRNA AL109954.3 2 OTTHUMG00000186738.1 overlapping_locus +39798 chr20 HAVANA gene 23491101 23496018 918.0 + 0 ENSG00000125815.8 protein_coding CST8 2 OTTHUMG00000032071.3 +39799 chr20 HAVANA gene 23481645 23519054 2290.0 - 0 ENSG00000260202.2 lincRNA AL109954.1 2 OTTHUMG00000175576.2 overlapping_locus +39800 chr20 HAVANA gene 23519146 23542018 1157.0 + 0 ENSG00000204663.9 transcribed_unprocessed_pseudogene CST13P 2 OTTHUMG00000032078.2 +39801 chr20 HAVANA gene 23547764 23550652 444.0 - 0 ENSG00000204662.2 unprocessed_pseudogene CST9LP1 2 OTTHUMG00000032079.1 +39802 chr20 HAVANA gene 23564732 23568749 959.0 - 0 ENSG00000101435.4 protein_coding CST9L 2 OTTHUMG00000032073.1 +39803 chr20 HAVANA gene 23583645 23586510 320.0 + 0 ENSG00000204658.5 unprocessed_pseudogene CST9LP2 2 OTTHUMG00000032075.1 +39804 chr20 HAVANA gene 23602410 23605876 1592.0 - 0 ENSG00000173335.4 protein_coding CST9 2 OTTHUMG00000032076.1 +39805 chr20 HAVANA gene 23631826 23632316 491.0 - 0 ENSG00000270001.1 lincRNA AL121894.2 2 OTTHUMG00000184119.1 overlapping_locus +39806 chr20 HAVANA gene 23626706 23638473 3695.0 - 0 ENSG00000101439.8 protein_coding CST3 2 OTTHUMG00000032080.3 overlapping_locus +39807 chr20 HAVANA gene 23655225 23656390 436.0 - 0 ENSG00000225056.1 lincRNA AL121894.1 1 OTTHUMG00000032077.1 +39808 chr20 HAVANA gene 23685640 23689040 751.0 - 0 ENSG00000101441.4 protein_coding CST4 2 OTTHUMG00000032083.2 +39809 chr20 HAVANA gene 23711320 23711406 87.0 - 0 ENSG00000232595.1 unprocessed_pseudogene CST2P1 2 OTTHUMG00000032084.1 +39810 chr20 HAVANA gene 23747553 23751268 872.0 - 0 ENSG00000170373.8 protein_coding CST1 2 OTTHUMG00000032085.2 +39811 chr20 HAVANA gene 23772785 23776169 398.0 - 0 ENSG00000277975.1 unprocessed_pseudogene CSTP2 2 OTTHUMG00000187965.2 +39812 chr20 HAVANA gene 23798141 23805663 797.0 + 0 ENSG00000230908.1 antisense AL591074.1 2 OTTHUMG00000133141.1 +39813 chr20 HAVANA gene 23823769 23826731 748.0 - 0 ENSG00000170369.3 protein_coding CST2 2 OTTHUMG00000032086.2 +39814 chr20 HAVANA gene 23875935 23879750 756.0 - 0 ENSG00000170367.4 protein_coding CST5 2 OTTHUMG00000032089.2 +39815 chr20 HAVANA gene 23918771 23922169 419.0 - 0 ENSG00000228476.1 unprocessed_pseudogene CSTP1 2 OTTHUMG00000032091.1 +39816 chr20 HAVANA gene 23980585 23980734 150.0 - 0 ENSG00000236168.1 unprocessed_pseudogene AL133466.1 2 OTTHUMG00000032094.2 +39817 chr20 HAVANA gene 23985050 23988779 1279.0 - 0 ENSG00000149435.12 protein_coding GGTLC1 2 OTTHUMG00000032095.3 +39818 chr20 HAVANA gene 23989292 23990454 1163.0 + 0 ENSG00000167390.8 processed_pseudogene POM121L3P 1 OTTHUMG00000032093.3 pseudo_consens +39819 chr20 HAVANA gene 24142590 24144386 534.0 - 0 ENSG00000236151.1 lincRNA AL110503.1 2 OTTHUMG00000032097.1 +39820 chr20 HAVANA gene 24199767 24224588 2376.0 + 0 ENSG00000230133.1 lincRNA LINC01721 2 OTTHUMG00000032098.1 +39821 chr20 ENSEMBL gene 24237255 24237398 144.0 + 0 ENSG00000200231.1 snRNA RNU1-23P 3 +39822 chr20 HAVANA gene 24297585 24318086 602.0 - 0 ENSG00000232200.2 lincRNA AL158090.1 2 OTTHUMG00000032099.2 +39823 chr20 HAVANA gene 24445391 24446314 924.0 + 0 ENSG00000234069.1 processed_pseudogene GAPDHP53 1 OTTHUMG00000032100.1 pseudo_consens +39824 chr20 HAVANA gene 24491472 24502345 823.0 - 0 ENSG00000228539.1 antisense AL157413.1 2 OTTHUMG00000032101.1 +39825 chr20 HAVANA gene 24469199 24666616 2847.0 + 0 ENSG00000101463.5 protein_coding SYNDIG1 2 OTTHUMG00000032104.1 +39826 chr20 HAVANA gene 24679547 24680991 805.0 + 0 ENSG00000231015.1 lincRNA AL049594.1 1 OTTHUMG00000032103.1 +39827 chr20 HAVANA gene 24931840 24932983 1144.0 + 0 ENSG00000274173.1 lincRNA AL035661.1 2 OTTHUMG00000186741.1 +39828 chr20 HAVANA gene 24949230 24959928 930.0 + 0 ENSG00000077984.5 protein_coding CST7 2 OTTHUMG00000032108.2 +39829 chr20 ENSEMBL gene 24974171 24974280 110.0 + 0 ENSG00000207355.1 snRNA RNU6-1257P 3 +39830 chr20 HAVANA gene 24962925 24992979 2454.0 - 0 ENSG00000101474.11 protein_coding APMAP 2 OTTHUMG00000032107.2 +39831 chr20 HAVANA gene 25006230 25058980 8691.0 - 0 ENSG00000154930.14 protein_coding ACSS1 2 OTTHUMG00000032112.2 +39832 chr20 HAVANA gene 25062962 25063591 630.0 - 0 ENSG00000275358.1 lincRNA AL080312.2 2 OTTHUMG00000186742.1 +39833 chr20 HAVANA gene 25070885 25082365 3849.0 - 0 ENSG00000100987.14 protein_coding VSX1 1 OTTHUMG00000032111.6 +39834 chr20 HAVANA gene 25099105 25099928 824.0 + 0 ENSG00000225069.3 processed_pseudogene AL080312.1 2 OTTHUMG00000133192.1 +39835 chr20 HAVANA gene 25140789 25149258 3379.0 - 0 ENSG00000230725.5 lincRNA AL035252.2 2 OTTHUMG00000032113.1 +39836 chr20 HAVANA gene 25161167 25162061 895.0 - 0 ENSG00000225344.1 processed_pseudogene AL035252.1 1 OTTHUMG00000032115.2 pseudo_consens +39837 chr20 ENSEMBL gene 25214698 25214798 101.0 + 0 ENSG00000202414.1 misc_RNA RF00019 3 +39838 chr20 HAVANA gene 25195693 25226729 5327.0 + 0 ENSG00000197586.12 protein_coding ENTPD6 2 OTTHUMG00000032116.3 ncRNA_host +39839 chr20 HAVANA gene 25226448 25226735 288.0 - 0 ENSG00000279322.1 TEC AL035252.4 2 OTTHUMG00000187305.1 +39840 chr20 HAVANA gene 25229150 25231933 2784.0 + 0 ENSG00000277938.1 lincRNA AL035252.3 2 OTTHUMG00000186743.1 +39841 chr20 HAVANA gene 25239007 25245229 2335.0 - 0 ENSG00000274414.1 lincRNA AL121772.1 2 OTTHUMG00000186744.1 +39842 chr20 HAVANA gene 25251008 25251304 297.0 - 0 ENSG00000274507.1 antisense AL121772.2 2 OTTHUMG00000186745.1 +39843 chr20 HAVANA gene 25284915 25285588 674.0 - 0 ENSG00000276952.1 antisense AL121772.3 2 OTTHUMG00000186746.1 +39844 chr20 HAVANA gene 25248069 25298014 4474.0 + 0 ENSG00000100994.11 protein_coding PYGB 2 OTTHUMG00000032117.3 +39845 chr20 HAVANA gene 25368275 25368766 492.0 - 0 ENSG00000227379.2 processed_pseudogene PPIAP2 1 OTTHUMG00000032123.1 pseudo_consens,overlapping_locus +39846 chr20 HAVANA gene 25294743 25390983 3429.0 - 0 ENSG00000100997.18 protein_coding ABHD12 2 OTTHUMG00000032121.4 overlapping_locus +39847 chr20 HAVANA gene 25407727 25452628 4068.0 + 0 ENSG00000101003.9 protein_coding GINS1 2 OTTHUMG00000032124.1 +39848 chr20 HAVANA gene 25452705 25585517 6008.0 - 0 ENSG00000101004.14 protein_coding NINL 2 OTTHUMG00000032127.4 +39849 chr20 ENSEMBL gene 25611153 25611223 71.0 + 0 ENSG00000251883.1 snRNA RNU6ATAC17P 3 +39850 chr20 HAVANA gene 25612935 25624175 3964.0 - 0 ENSG00000170191.4 protein_coding NANP 2 OTTHUMG00000032132.2 +39851 chr20 ENSEMBL gene 25654595 25654881 287.0 - 0 ENSG00000242236.2 misc_RNA RN7SL594P 3 +39852 chr20 HAVANA gene 25669857 25670386 530.0 - 0 ENSG00000236542.1 processed_pseudogene MED28P7 1 OTTHUMG00000032128.1 pseudo_consens +39853 chr20 HAVANA gene 25624045 25678074 5308.0 + 0 ENSG00000213742.6 antisense ZNF337-AS1 2 OTTHUMG00000032129.1 +39854 chr20 HAVANA gene 25680781 25681246 466.0 + 0 ENSG00000278383.1 antisense AL031673.1 2 OTTHUMG00000186747.1 +39855 chr20 HAVANA gene 25674215 25696841 3823.0 - 0 ENSG00000130684.13 protein_coding ZNF337 2 OTTHUMG00000032131.2 +39856 chr20 HAVANA gene 25734264 25735093 830.0 + 0 ENSG00000230772.1 unprocessed_pseudogene VN1R108P 2 OTTHUMG00000032139.1 +39857 chr20 HAVANA gene 25697003 25752761 1040.0 + 0 ENSG00000226465.2 processed_transcript AL390198.1 1 OTTHUMG00000032135.2 +39858 chr20 HAVANA gene 25783553 25783919 367.0 + 0 ENSG00000275048.1 processed_pseudogene BSNDP1 2 OTTHUMG00000187967.1 +39859 chr20 HAVANA gene 25835985 25836832 222.0 - 0 ENSG00000250090.1 unprocessed_pseudogene AL390198.2 2 OTTHUMG00000032137.1 overlapping_locus +39860 chr20 HAVANA gene 25845497 25845862 366.0 + 0 ENSG00000274973.1 processed_pseudogene BSNDP2 2 OTTHUMG00000187970.1 +39861 chr20 HAVANA gene 25763466 25868225 3854.0 - 0 ENSG00000175170.14 lincRNA FAM182B 1 OTTHUMG00000032136.7 overlapping_locus +39862 chr20 HAVANA gene 25919499 25919681 183.0 - 0 ENSG00000228593.1 unprocessed_pseudogene CFTRP1 2 OTTHUMG00000032142.2 +39863 chr20 HAVANA gene 25955812 25969288 4604.0 + 0 ENSG00000226203.1 lincRNA LINC01733 2 OTTHUMG00000150168.1 +39864 chr20 HAVANA gene 26008791 26010531 542.0 - 0 ENSG00000231081.1 lincRNA AL078587.1 2 OTTHUMG00000032141.1 +39865 chr20 HAVANA gene 26018832 26020684 353.0 + 0 ENSG00000204556.4 unprocessed_pseudogene AL450124.1 2 OTTHUMG00000032143.1 +39866 chr20 HAVANA gene 26071988 26072351 364.0 - 0 ENSG00000277508.1 processed_pseudogene BSNDP3 2 OTTHUMG00000187972.1 +39867 chr20 HAVANA gene 26054655 26086917 5787.0 + 0 ENSG00000125804.13 processed_transcript FAM182A 2 OTTHUMG00000032144.2 +39868 chr20 HAVANA gene 26103416 26114028 406.0 - 0 ENSG00000240108.1 transcribed_unprocessed_pseudogene NCOR1P1 2 OTTHUMG00000032145.2 +39869 chr20 HAVANA gene 26132887 26134198 271.0 - 0 ENSG00000230440.1 lincRNA AL391119.1 2 OTTHUMG00000032148.1 +39870 chr20 HAVANA gene 26188408 26196891 1352.0 + 0 ENSG00000238129.5 lincRNA AL121904.1 2 OTTHUMG00000032150.2 +39871 chr20 ENSEMBL gene 26208186 26208278 93.0 - 0 ENSG00000284419.1 miRNA MIR663A 3 +39872 chr20 HAVANA gene 26186920 26251526 5252.0 - 0 ENSG00000227195.10 processed_transcript MIR663AHG 2 OTTHUMG00000032149.4 ncRNA_host +39873 chr20 HAVANA gene 28580709 28602664 769.0 - 0 ENSG00000282826.1 unprocessed_pseudogene FRG1CP 2 OTTHUMG00000191531.2 +39874 chr20 HAVANA gene 29080390 29102761 771.0 + 0 ENSG00000282870.1 unprocessed_pseudogene FRG1DP 2 OTTHUMG00000191532.1 +39875 chr20 ENSEMBL gene 29297095 29297246 152.0 - 0 ENSG00000283568.1 rRNA RF00002 3 +39876 chr20 HAVANA gene 29318824 29319579 756.0 + 0 ENSG00000283069.1 unprocessed_pseudogene DUX4L32 1 OTTHUMG00000191528.1 pseudo_consens +39877 chr20 HAVANA gene 29321310 29321666 357.0 - 0 ENSG00000282949.1 unprocessed_pseudogene PCMTD1P7 2 OTTHUMG00000191529.1 +39878 chr20 HAVANA gene 29324092 29325049 958.0 + 0 ENSG00000282894.1 unprocessed_pseudogene DUX4L33 1 OTTHUMG00000191530.1 pseudo_consens +39879 chr20 HAVANA gene 29410348 29411600 1253.0 - 0 ENSG00000282935.1 unprocessed_pseudogene DUX4L34 1 OTTHUMG00000191523.1 pseudo_consens +39880 chr20 HAVANA gene 29415264 29416911 835.0 - 0 ENSG00000282842.1 unprocessed_pseudogene FRG2EP 2 OTTHUMG00000191524.1 +39881 chr20 HAVANA gene 29427400 29427883 484.0 - 0 ENSG00000283123.1 processed_pseudogene RARRES2P11 1 OTTHUMG00000191525.1 pseudo_consens +39882 chr20 HAVANA gene 29430723 29432913 2191.0 + 0 ENSG00000282968.1 processed_pseudogene AGGF1P10 1 OTTHUMG00000191526.1 pseudo_consens +39883 chr20 HAVANA gene 29448517 29449306 790.0 - 0 ENSG00000282911.1 unprocessed_pseudogene DUX4L35 1 OTTHUMG00000191527.1 pseudo_consens +39884 chr20 HAVANA gene 29480147 29497179 770.0 - 0 ENSG00000282995.1 unprocessed_pseudogene FRG1EP 2 OTTHUMG00000191533.1 +39885 chr20 ENSEMBL gene 29575060 29575171 112.0 + 0 ENSG00000283592.1 misc_RNA RF00019 3 +39886 chr20 HAVANA gene 29641778 29641976 199.0 + 0 ENSG00000282921.1 processed_pseudogene CFTRP2 2 OTTHUMG00000191534.1 +39887 chr20 ENSEMBL gene 29741510 29741661 152.0 - 0 ENSG00000283291.1 rRNA RF00002 3 +39888 chr20 HAVANA gene 29746181 29748090 1910.0 + 0 ENSG00000283005.1 processed_pseudogene CDC27P3 1 OTTHUMG00000191536.1 pseudo_consens +39889 chr20 ENSEMBL gene 29874059 29874177 119.0 + 0 ENSG00000283433.1 rRNA RNA5SP532 3 +39890 chr20 HAVANA gene 29878636 29879363 728.0 - 0 ENSG00000283020.1 unprocessed_pseudogene DUX4L37 1 OTTHUMG00000191535.1 pseudo_consens +39891 chr20 HAVANA gene 30214765 30214976 212.0 - 0 ENSG00000204555.3 processed_pseudogene CFTRP3 2 OTTHUMG00000032151.2 +39892 chr20 HAVANA gene 30278906 30288479 4472.0 - 0 ENSG00000205611.4 lincRNA LINC01597 2 OTTHUMG00000133197.2 +39893 chr20 ENSEMBL gene 30309015 30309126 112.0 - 0 ENSG00000200325.1 misc_RNA RF00019 3 +39894 chr20 HAVANA gene 30323812 30361730 1035.0 - 0 ENSG00000231934.1 antisense FAM242A 2 OTTHUMG00000032154.3 +39895 chr20 HAVANA gene 30377372 30399257 761.0 + 0 ENSG00000149531.15 unprocessed_pseudogene FRG1BP 2 OTTHUMG00000032157.6 +39896 chr20 HAVANA gene 30403123 30403384 262.0 - 0 ENSG00000238151.1 processed_pseudogene MLLT10P1 2 OTTHUMG00000032156.1 +39897 chr20 ENSEMBL gene 30484925 30485076 152.0 - 0 ENSG00000275877.1 rRNA RF00002 3 +39898 chr20 HAVANA gene 30545601 30551470 1754.0 + 0 ENSG00000283443.1 unprocessed_pseudogene AC018688.1 2 OTTHUMG00000191872.1 +39899 chr20 ENSEMBL gene 30713240 30713346 107.0 - 0 ENSG00000274385.1 snRNA RF00026 3 +39900 chr20 HAVANA gene 30656033 30723932 3728.0 - 0 ENSG00000277112.3 transcribed_unprocessed_pseudogene ANKRD20A21P 2 OTTHUMG00000189351.2 +39901 chr20 ENSEMBL gene 30816156 30816274 119.0 - 0 ENSG00000275305.1 rRNA RNA5SP528 3 +39902 chr20 HAVANA gene 31257664 31259632 267.0 + 0 ENSG00000215547.1 protein_coding DEFB115 2 OTTHUMG00000159284.2 +39903 chr20 HAVANA gene 31274170 31274867 698.0 + 0 ENSG00000215546.2 processed_pseudogene DKKL1P1 1 OTTHUMG00000032158.1 pseudo_consens +39904 chr20 HAVANA gene 31285317 31286835 1519.0 - 0 ENSG00000224628.2 processed_pseudogene AL121723.1 1 OTTHUMG00000032162.2 pseudo_consens +39905 chr20 HAVANA gene 31303212 31308585 309.0 - 0 ENSG00000215545.1 protein_coding DEFB116 2 OTTHUMG00000159285.2 +39906 chr20 HAVANA gene 31311303 31311962 332.0 - 0 ENSG00000237929.1 processed_pseudogene RPL31P3 1 OTTHUMG00000032160.1 pseudo_consens +39907 chr20 HAVANA gene 31341371 31344471 2404.0 - 0 ENSG00000236121.1 processed_pseudogene HAUS6P2 1 OTTHUMG00000032159.1 pseudo_consens +39908 chr20 ENSEMBL gene 31356870 31356978 109.0 + 0 ENSG00000252649.1 rRNA_pseudogene RNA5SP480 3 +39909 chr20 HAVANA gene 31360790 31360930 141.0 + 0 ENSG00000212717.3 processed_pseudogene DEFB117 2 OTTHUMG00000184006.1 +39910 chr20 HAVANA gene 31368618 31373923 1158.0 + 0 ENSG00000131068.3 protein_coding DEFB118 2 OTTHUMG00000032161.2 +39911 chr20 ENSEMBL gene 31376319 31376446 128.0 + 0 ENSG00000212134.1 snoRNA RF00561 3 +39912 chr20 HAVANA gene 31377164 31390603 797.0 - 0 ENSG00000180483.6 protein_coding DEFB119 2 OTTHUMG00000032172.2 +39913 chr20 HAVANA gene 31404845 31412838 630.0 - 0 ENSG00000204548.3 protein_coding DEFB121 2 OTTHUMG00000032171.2 +39914 chr20 HAVANA gene 31421436 31429180 547.0 - 0 ENSG00000204547.7 transcribed_unprocessed_pseudogene DEFB122 2 OTTHUMG00000032169.2 +39915 chr20 HAVANA gene 31440519 31450257 467.0 + 0 ENSG00000180424.6 protein_coding DEFB123 2 OTTHUMG00000032170.2 +39916 chr20 HAVANA gene 31465506 31476757 729.0 - 0 ENSG00000180383.3 protein_coding DEFB124 2 OTTHUMG00000159287.2 +39917 chr20 HAVANA gene 31475293 31484905 1665.0 + 0 ENSG00000088320.3 protein_coding REM1 2 OTTHUMG00000032168.2 +39918 chr20 HAVANA gene 31485778 31487574 587.0 + 0 ENSG00000233354.1 lincRNA LINC00028 2 OTTHUMG00000032166.3 +39919 chr20 HAVANA gene 31535263 31535626 364.0 + 0 ENSG00000274364.1 sense_intronic AL110115.1 2 OTTHUMG00000186752.1 overlapping_locus +39920 chr20 HAVANA gene 31547412 31548081 670.0 + 0 ENSG00000101898.6 protein_coding MCTS2P 2 OTTHUMG00000032177.2 overlapping_locus,retrogene +39921 chr20 HAVANA gene 31563166 31564076 356.0 + 0 ENSG00000235313.1 sense_intronic HM13-IT1 1 OTTHUMG00000046194.1 overlapping_locus +39922 chr20 HAVANA gene 31567707 31573263 489.0 - 0 ENSG00000230613.1 antisense HM13-AS1 1 OTTHUMG00000032176.1 +39923 chr20 HAVANA gene 31514410 31577923 10805.0 + 0 ENSG00000101294.17 protein_coding HM13 2 OTTHUMG00000032175.11 overlapping_locus +39924 chr20 ENSEMBL gene 31581089 31581192 104.0 + 0 ENSG00000201770.1 snRNA RNU6-384P 3 +39925 chr20 HAVANA gene 31580890 31581214 325.0 + 0 ENSG00000278276.1 lincRNA AL110115.2 2 OTTHUMG00000186756.1 ncRNA_host +39926 chr20 HAVANA gene 31605283 31606515 1233.0 + 0 ENSG00000125968.8 protein_coding ID1 2 OTTHUMG00000032181.1 +39927 chr20 ENSEMBL gene 31607186 31607240 55.0 + 0 ENSG00000264395.1 miRNA MIR3193 3 +39928 chr20 HAVANA gene 31637888 31645006 693.0 + 0 ENSG00000131055.4 protein_coding COX4I2 2 OTTHUMG00000032180.1 +39929 chr20 HAVANA gene 31686216 31716825 374.0 + 0 ENSG00000236559.1 antisense AL117381.1 2 OTTHUMG00000032185.2 +39930 chr20 HAVANA gene 31721507 31723409 1903.0 + 0 ENSG00000281376.1 antisense ABALON 2 OTTHUMG00000189574.1 +39931 chr20 HAVANA gene 31664452 31723989 3314.0 - 0 ENSG00000171552.12 protein_coding BCL2L1 2 OTTHUMG00000032192.3 +39932 chr20 HAVANA gene 31739271 31801805 3605.0 + 0 ENSG00000088325.15 protein_coding TPX2 2 OTTHUMG00000032190.2 +39933 chr20 HAVANA gene 31808503 31808749 247.0 - 0 ENSG00000230801.1 processed_pseudogene AL160175.1 1 OTTHUMG00000032187.1 pseudo_consens +39934 chr20 HAVANA gene 31819308 31834689 2976.0 + 0 ENSG00000101306.10 protein_coding MYLK2 2 OTTHUMG00000032194.2 +39935 chr20 HAVANA gene 31844301 31845619 1319.0 - 0 ENSG00000179772.7 protein_coding FOXS1 2 OTTHUMG00000032183.2 +39936 chr20 HAVANA gene 31847637 31870747 3791.0 - 0 ENSG00000149599.15 protein_coding DUSP15 2 OTTHUMG00000032182.7 +39937 chr20 ENSEMBL gene 31901254 31901426 173.0 + 0 ENSG00000199497.1 snRNA RNU1-94P 3 +39938 chr20 HAVANA gene 31870702 31944963 5925.0 + 0 ENSG00000131044.17 protein_coding TTLL9 2 OTTHUMG00000186843.3 ncRNA_host +39939 chr20 HAVANA gene 31944342 31952092 1998.0 - 0 ENSG00000088356.5 protein_coding PDRG1 2 OTTHUMG00000032196.3 +39940 chr20 HAVANA gene 31970181 31970831 651.0 + 0 ENSG00000278012.1 sense_intronic AL031658.2 2 OTTHUMG00000186867.1 overlapping_locus +39941 chr20 HAVANA gene 31968002 32003387 7844.0 + 0 ENSG00000260903.2 protein_coding XKR7 2 OTTHUMG00000032198.3 overlapping_locus +39942 chr20 ENSEMBL gene 32008351 32008472 122.0 + 0 ENSG00000252623.1 rRNA_pseudogene RNA5SP481 3 +39943 chr20 HAVANA gene 32027753 32031575 2013.0 - 0 ENSG00000226239.1 antisense AL031658.1 2 OTTHUMG00000032202.1 +39944 chr20 HAVANA gene 32010450 32032180 2587.0 + 0 ENSG00000101331.15 protein_coding CCM2L 2 OTTHUMG00000032197.2 +39945 chr20 ENSEMBL gene 32050588 32050705 118.0 + 0 ENSG00000212571.1 rRNA_pseudogene RNA5SP482 3 +39946 chr20 HAVANA gene 32052188 32101856 3092.0 + 0 ENSG00000101336.13 protein_coding HCK 2 OTTHUMG00000032204.7 +39947 chr20 HAVANA gene 32116171 32116629 459.0 + 0 ENSG00000275576.1 sense_intronic AL049539.1 2 OTTHUMG00000186868.1 overlapping_locus +39948 chr20 HAVANA gene 32109506 32167258 5415.0 + 0 ENSG00000101337.15 protein_coding TM9SF4 2 OTTHUMG00000032206.5 overlapping_locus +39949 chr20 HAVANA gene 32170390 32170790 401.0 - 0 ENSG00000224452.1 processed_pseudogene RSL24D1P6 1 OTTHUMG00000032207.1 pseudo_consens +39950 chr20 HAVANA gene 32186477 32190527 4051.0 - 0 ENSG00000235217.6 transcribed_processed_pseudogene TSPY26P 1 OTTHUMG00000032212.2 pseudo_consens +39951 chr20 HAVANA gene 32192503 32207791 5705.0 - 0 ENSG00000126003.6 protein_coding PLAGL2 2 OTTHUMG00000032210.2 +39952 chr20 ENSEMBL gene 32237795 32237847 53.0 + 0 ENSG00000284125.1 miRNA MIR1825 3 +39953 chr20 HAVANA gene 32207880 32238667 6426.0 + 0 ENSG00000101346.13 protein_coding POFUT1 2 OTTHUMG00000133268.2 ncRNA_host +39954 chr20 HAVANA gene 32277664 32335011 6103.0 + 0 ENSG00000101350.7 protein_coding KIF3B 2 OTTHUMG00000032214.1 +39955 chr20 HAVANA gene 32355053 32355734 682.0 + 0 ENSG00000277692.1 lincRNA AL121583.1 2 OTTHUMG00000186870.1 +39956 chr20 HAVANA gene 32358330 32439319 13676.0 + 0 ENSG00000171456.18 protein_coding ASXL1 1 OTTHUMG00000032218.8 +39957 chr20 HAVANA gene 32449755 32453607 986.0 + 0 ENSG00000236772.1 antisense AL034550.1 1 OTTHUMG00000032217.1 +39958 chr20 HAVANA gene 32509959 32520285 1771.0 + 0 ENSG00000277301.1 antisense AL034550.2 2 OTTHUMG00000186874.1 +39959 chr20 HAVANA gene 32561093 32573888 469.0 + 0 ENSG00000233293.1 antisense AL133343.2 2 OTTHUMG00000032221.1 +39960 chr20 HAVANA gene 32443059 32585074 9448.0 - 0 ENSG00000197183.14 protein_coding NOL4L 2 OTTHUMG00000032219.4 +39961 chr20 HAVANA gene 32581963 32593900 370.0 + 0 ENSG00000228156.1 antisense AL133343.1 2 OTTHUMG00000032220.1 overlapping_locus +39962 chr20 HAVANA gene 32564992 32608893 870.0 + 0 ENSG00000204393.7 lincRNA NOL4L-DT 2 OTTHUMG00000032222.1 overlapping_locus +39963 chr20 HAVANA gene 32631652 32673941 5076.0 - 0 ENSG00000198547.8 protein_coding C20orf203 2 OTTHUMG00000032224.4 overlapping_locus +39964 chr20 HAVANA gene 32690180 32690815 636.0 - 0 ENSG00000175730.8 processed_pseudogene BAK1P1 2 OTTHUMG00000158163.1 +39965 chr20 HAVANA gene 32632183 32743567 4707.0 - 0 ENSG00000285382.1 protein_coding FO393400.1 2 OTTHUMG00000192400.1 overlapping_locus +39966 chr20 HAVANA gene 32702691 32743997 2584.0 - 0 ENSG00000149600.11 protein_coding COMMD7 2 OTTHUMG00000032229.4 overlapping_locus +39967 chr20 HAVANA gene 32762385 32809356 4630.0 + 0 ENSG00000088305.18 protein_coding DNMT3B 2 OTTHUMG00000032226.4 +39968 chr20 HAVANA gene 32819893 32850405 2623.0 + 0 ENSG00000101367.8 protein_coding MAPRE1 2 OTTHUMG00000032228.2 +39969 chr20 HAVANA gene 32843128 32854257 459.0 - 0 ENSG00000260536.1 antisense AL035071.2 2 OTTHUMG00000177125.1 +39970 chr20 HAVANA gene 32856621 32858751 2131.0 + 0 ENSG00000260257.2 lincRNA AL035071.1 2 OTTHUMG00000177126.2 +39971 chr20 HAVANA gene 32858923 32961609 4536.0 + 0 ENSG00000215529.12 protein_coding EFCAB8 1 OTTHUMG00000153693.6 +39972 chr20 HAVANA gene 32983773 33004433 1475.0 - 0 ENSG00000167098.11 protein_coding SUN5 2 OTTHUMG00000032239.2 +39973 chr20 HAVANA gene 33007600 33023709 1898.0 + 0 ENSG00000078898.6 protein_coding BPIFB2 2 OTTHUMG00000032232.2 +39974 chr20 HAVANA gene 33031648 33044047 1676.0 + 0 ENSG00000167104.11 protein_coding BPIFB6 2 OTTHUMG00000032238.3 +39975 chr20 HAVANA gene 33047517 33048152 636.0 - 0 ENSG00000214245.3 processed_pseudogene PUDPP3 1 OTTHUMG00000032236.1 pseudo_consens +39976 chr20 HAVANA gene 33055424 33073628 1454.0 + 0 ENSG00000186190.7 protein_coding BPIFB3 2 OTTHUMG00000032234.2 +39977 chr20 HAVANA gene 33079644 33111751 2448.0 + 0 ENSG00000186191.7 protein_coding BPIFB4 2 OTTHUMG00000032235.5 +39978 chr20 HAVANA gene 33161768 33181412 1178.0 + 0 ENSG00000131050.10 protein_coding BPIFA2 2 OTTHUMG00000032244.2 +39979 chr20 HAVANA gene 33187391 33188292 557.0 + 0 ENSG00000237662.1 processed_pseudogene SOCS2P1 1 OTTHUMG00000032246.1 pseudo_consens +39980 chr20 HAVANA gene 33193585 33210462 1725.0 + 0 ENSG00000183566.10 transcribed_unprocessed_pseudogene BPIFA4P 2 OTTHUMG00000032251.6 +39981 chr20 HAVANA gene 33214920 33217067 366.0 - 0 ENSG00000224876.1 antisense AL121901.1 1 OTTHUMG00000032248.1 +39982 chr20 HAVANA gene 33217310 33227758 2481.0 + 0 ENSG00000131059.11 protein_coding BPIFA3 2 OTTHUMG00000032245.2 +39983 chr20 HAVANA gene 33235995 33243311 1081.0 + 0 ENSG00000198183.11 protein_coding BPIFA1 2 OTTHUMG00000032243.3 +39984 chr20 HAVANA gene 33272262 33272657 396.0 - 0 ENSG00000233106.1 processed_pseudogene RPL12P3 1 OTTHUMG00000032250.2 pseudo_consens +39985 chr20 HAVANA gene 33273480 33309878 3101.0 + 0 ENSG00000125999.10 protein_coding BPIFB1 2 OTTHUMG00000032252.4 +39986 chr20 HAVANA gene 33316869 33329969 1099.0 + 0 ENSG00000233146.1 unitary_pseudogene BPIFB5P 2 OTTHUMG00000032258.1 +39987 chr20 HAVANA gene 33347720 33354444 1611.0 + 0 ENSG00000125997.5 transcribed_unitary_pseudogene BPIFB9P 2 OTTHUMG00000032253.4 +39988 chr20 HAVANA gene 33358839 33401561 4567.0 - 0 ENSG00000101391.20 protein_coding CDK5RAP1 2 OTTHUMG00000032256.5 +39989 chr20 HAVANA gene 33407955 33443892 2342.0 - 0 ENSG00000101400.5 protein_coding SNTA1 2 OTTHUMG00000032259.2 +39990 chr20 HAVANA gene 33490075 33650036 9457.0 + 0 ENSG00000078699.21 protein_coding CBFA2T2 2 OTTHUMG00000032261.6 +39991 chr20 HAVANA gene 33655701 33656423 723.0 - 0 ENSG00000275223.1 lincRNA AL121906.2 2 OTTHUMG00000186771.1 +39992 chr20 HAVANA gene 33662284 33665619 2442.0 + 0 ENSG00000149609.5 protein_coding C20orf144 2 OTTHUMG00000032263.3 +39993 chr20 HAVANA gene 33666498 33668525 2028.0 + 0 ENSG00000182584.4 protein_coding ACTL10 2 OTTHUMG00000032262.1 retrogene +39994 chr20 HAVANA gene 33657087 33674463 4342.0 - 0 ENSG00000125967.16 protein_coding NECAB3 2 OTTHUMG00000032264.7 +39995 chr20 HAVANA gene 33674517 33675380 440.0 + 0 ENSG00000271803.1 antisense AL121906.1 2 OTTHUMG00000185827.1 +39996 chr20 HAVANA gene 33675683 33686404 2503.0 - 0 ENSG00000101412.12 protein_coding E2F1 2 OTTHUMG00000032265.2 +39997 chr20 HAVANA gene 33702754 33720319 5723.0 - 0 ENSG00000101417.11 protein_coding PXMP4 2 OTTHUMG00000032273.4 +39998 chr20 HAVANA gene 33728931 33731828 401.0 - 0 ENSG00000229188.2 antisense AL050349.1 2 OTTHUMG00000032274.2 +39999 chr20 HAVANA gene 33752167 33752543 377.0 - 0 ENSG00000230837.1 processed_pseudogene RPL31P2 1 OTTHUMG00000032276.1 pseudo_consens +40000 chr20 HAVANA gene 33731657 33792269 5457.0 + 0 ENSG00000131061.13 protein_coding ZNF341 2 OTTHUMG00000032275.3 +40001 chr20 HAVANA gene 33787373 33811097 703.0 - 0 ENSG00000230753.5 antisense ZNF341-AS1 1 OTTHUMG00000032278.2 +40002 chr20 HAVANA gene 33811304 33854366 1646.0 + 0 ENSG00000101421.3 protein_coding CHMP4B 2 OTTHUMG00000032272.2 +40003 chr20 HAVANA gene 33912323 33913336 723.0 - 0 ENSG00000214200.2 processed_pseudogene TPM3P2 1 OTTHUMG00000032281.1 pseudo_consens +40004 chr20 HAVANA gene 33965162 33965576 415.0 + 0 ENSG00000228958.1 processed_pseudogene PIGPP3 1 OTTHUMG00000032280.1 pseudo_consens +40005 chr20 HAVANA gene 33980687 33994357 8836.0 - 0 ENSG00000285230.1 lincRNA RALY-AS1 2 OTTHUMG00000032279.2 overlapping_locus +40006 chr20 HAVANA gene 34014969 34017749 603.0 - 0 ENSG00000228386.2 lincRNA AL031668.1 2 OTTHUMG00000032284.2 +40007 chr20 ENSEMBL gene 34049119 34049190 72.0 + 0 ENSG00000264616.1 miRNA MIR4755 3 +40008 chr20 HAVANA gene 33993646 34108308 7513.0 + 0 ENSG00000125970.11 protein_coding RALY 2 OTTHUMG00000032283.3 ncRNA_host +40009 chr20 HAVANA gene 34088298 34112332 2656.0 - 0 ENSG00000125977.6 protein_coding EIF2S2 2 OTTHUMG00000032287.2 +40010 chr20 HAVANA gene 34122470 34123290 821.0 + 0 ENSG00000225246.1 processed_pseudogene RPS2P1 1 OTTHUMG00000032286.1 pseudo_consens +40011 chr20 HAVANA gene 34213495 34215892 2398.0 - 0 ENSG00000214185.3 processed_pseudogene XPOTP1 1 OTTHUMG00000032292.1 pseudo_consens +40012 chr20 HAVANA gene 34245953 34246537 585.0 - 0 ENSG00000236456.1 processed_pseudogene AL035458.1 1 OTTHUMG00000032291.1 pseudo_consens,overlapping_locus +40013 chr20 HAVANA gene 34194569 34269344 778.0 + 0 ENSG00000101440.9 protein_coding ASIP 2 OTTHUMG00000032289.2 +40014 chr20 HAVANA gene 34234840 34281173 478.0 - 0 ENSG00000250917.1 sense_overlapping AL035458.2 1 OTTHUMG00000185883.1 overlapping_locus +40015 chr20 HAVANA gene 34281632 34286466 586.0 - 0 ENSG00000272945.1 sense_intronic AL356299.2 2 OTTHUMG00000185848.1 overlapping_locus +40016 chr20 HAVANA gene 34280268 34311802 3894.0 - 0 ENSG00000101444.12 protein_coding AHCY 2 OTTHUMG00000140098.3 overlapping_locus +40017 chr20 HAVANA gene 34347671 34347785 115.0 - 0 ENSG00000234087.1 processed_pseudogene AL356299.1 2 OTTHUMG00000032295.1 +40018 chr20 ENSEMBL gene 34384165 34384265 101.0 - 0 ENSG00000201498.1 misc_RNA RF00019 3 +40019 chr20 HAVANA gene 34402149 34402696 548.0 - 0 ENSG00000234933.1 processed_pseudogene CDC42P1 1 OTTHUMG00000032293.1 pseudo_consens +40020 chr20 HAVANA gene 34441592 34442025 299.0 - 0 ENSG00000236388.1 antisense ITCH-AS1 2 OTTHUMG00000032298.1 +40021 chr20 HAVANA gene 34450930 34454552 208.0 + 0 ENSG00000231795.1 sense_intronic ITCH-IT1 2 OTTHUMG00000046196.1 overlapping_locus +40022 chr20 ENSEMBL gene 34466325 34466418 94.0 + 0 ENSG00000207997.1 miRNA MIR644A 3 +40023 chr20 HAVANA gene 34475924 34476474 551.0 - 0 ENSG00000181741.7 processed_pseudogene FDX1P1 1 OTTHUMG00000032297.1 pseudo_consens +40024 chr20 HAVANA gene 34476205 34476787 583.0 + 0 ENSG00000277558.1 sense_intronic AL109923.1 2 OTTHUMG00000186779.1 overlapping_locus +40025 chr20 HAVANA gene 34363235 34511393 6664.0 + 0 ENSG00000078747.14 protein_coding ITCH 2 OTTHUMG00000032300.3 ncRNA_host,overlapping_locus +40026 chr20 ENSEMBL gene 34526510 34526606 97.0 - 0 ENSG00000206582.1 misc_RNA RF00019 3 +40027 chr20 HAVANA gene 34516409 34540958 2460.0 + 0 ENSG00000125971.16 protein_coding DYNLRB1 1 OTTHUMG00000032302.2 +40028 chr20 HAVANA gene 34546854 34560345 1762.0 + 0 ENSG00000101460.12 protein_coding MAP1LC3A 2 OTTHUMG00000032306.3 +40029 chr20 HAVANA gene 34688688 34688978 291.0 + 0 ENSG00000231034.1 processed_pseudogene AL118520.1 2 OTTHUMG00000032303.1 +40030 chr20 HAVANA gene 34560542 34698790 2705.0 - 0 ENSG00000101464.10 protein_coding PIGU 2 OTTHUMG00000032304.6 overlapping_locus +40031 chr20 HAVANA gene 34704290 34713439 4228.0 + 0 ENSG00000078804.12 protein_coding TP53INP2 2 OTTHUMG00000032310.3 +40032 chr20 HAVANA gene 34689097 34825649 11131.0 - 0 ENSG00000198646.13 protein_coding NCOA6 2 OTTHUMG00000032311.8 overlapping_locus +40033 chr20 HAVANA gene 34833575 34834462 573.0 - 0 ENSG00000225336.2 processed_pseudogene HMGB3P1 1 OTTHUMG00000032313.1 pseudo_consens +40034 chr20 HAVANA gene 34844720 34872860 2966.0 - 0 ENSG00000131067.16 protein_coding GGT7 1 OTTHUMG00000032314.7 +40035 chr20 HAVANA gene 34872146 34927962 5385.0 + 0 ENSG00000131069.19 protein_coding ACSS2 2 OTTHUMG00000032317.8 +40036 chr20 HAVANA gene 34928433 34956027 6174.0 - 0 ENSG00000100983.10 protein_coding GSS 2 OTTHUMG00000032315.7 +40037 chr20 ENSEMBL gene 34990400 34990472 73.0 - 0 ENSG00000283441.1 miRNA MIR499B 3 +40038 chr20 ENSEMBL gene 34990376 34990497 122.0 + 0 ENSG00000207635.1 miRNA MIR499A 3 +40039 chr20 HAVANA gene 34975403 35002437 7931.0 + 0 ENSG00000078814.15 protein_coding MYH7B 1 OTTHUMG00000032320.3 ncRNA_host +40040 chr20 ENSEMBL gene 35030317 35030420 104.0 - 0 ENSG00000202150.1 snRNA RNU6-407P 3 +40041 chr20 HAVANA gene 35002404 35092871 3226.0 - 0 ENSG00000100991.11 protein_coding TRPC4AP 2 OTTHUMG00000032319.3 ncRNA_host +40042 chr20 ENSEMBL gene 35117136 35117207 72.0 - 0 ENSG00000201151.1 snoRNA RF00275 3 +40043 chr20 HAVANA gene 35115357 35147364 1919.0 - 0 ENSG00000088298.12 protein_coding EDEM2 2 OTTHUMG00000032322.4 ncRNA_host +40044 chr20 HAVANA gene 35174355 35174919 565.0 - 0 ENSG00000278367.1 antisense AL356652.1 2 OTTHUMG00000186781.1 +40045 chr20 ENSEMBL gene 35195306 35195423 118.0 + 0 ENSG00000200301.1 rRNA_pseudogene RNA5SP483 3 +40046 chr20 HAVANA gene 35172073 35216240 1696.0 + 0 ENSG00000101000.5 protein_coding PROCR 2 OTTHUMG00000032323.4 +40047 chr20 HAVANA gene 35218009 35218185 177.0 + 0 ENSG00000229230.3 processed_pseudogene MT1P3 1 OTTHUMG00000032331.2 pseudo_consens +40048 chr20 HAVANA gene 35262727 35264187 1461.0 - 0 ENSG00000279253.1 TEC AL121753.2 2 OTTHUMG00000183014.1 overlapping_locus +40049 chr20 HAVANA gene 35226654 35277000 4414.0 + 0 ENSG00000125966.9 protein_coding MMP24 2 OTTHUMG00000032330.5 +40050 chr20 HAVANA gene 35201745 35278131 5511.0 - 0 ENSG00000126005.16 protein_coding MMP24OS 1 OTTHUMG00000032333.9 overlapping_locus +40051 chr20 HAVANA gene 35267885 35280043 529.0 - 0 ENSG00000261582.1 protein_coding AL121753.1 2 OTTHUMG00000176080.2 overlapping_locus +40052 chr20 HAVANA gene 35278911 35284985 1631.0 - 0 ENSG00000242372.7 protein_coding EIF6 2 OTTHUMG00000032328.6 overlapping_locus +40053 chr20 HAVANA gene 35285251 35285756 352.0 + 0 ENSG00000235214.1 antisense FAM83C-AS1 2 OTTHUMG00000032327.2 +40054 chr20 HAVANA gene 35285731 35292401 3145.0 - 0 ENSG00000125998.7 protein_coding FAM83C 2 OTTHUMG00000032332.3 +40055 chr20 HAVANA gene 35302566 35412141 6782.0 - 0 ENSG00000101019.21 protein_coding UQCC1 1 OTTHUMG00000032335.12 +40056 chr20 HAVANA gene 35433029 35435450 1734.0 + 0 ENSG00000204183.1 antisense GDF5OS 2 OTTHUMG00000055985.4 +40057 chr20 ENSEMBL gene 35453954 35454097 144.0 - 0 ENSG00000221763.1 miRNA MIR1289-1 3 +40058 chr20 HAVANA gene 35433347 35454746 2646.0 - 0 ENSG00000125965.8 protein_coding GDF5 2 OTTHUMG00000032341.3 ncRNA_host +40059 chr20 HAVANA gene 35476203 35490982 839.0 - 0 ENSG00000230155.6 antisense FO393401.1 1 OTTHUMG00000055986.3 +40060 chr20 HAVANA gene 35455164 35519280 16295.0 + 0 ENSG00000126001.15 protein_coding CEP250 1 OTTHUMG00000032343.39 +40061 chr20 HAVANA gene 35520852 35528255 1327.0 - 0 ENSG00000242507.6 transcribed_unprocessed_pseudogene FO393401.2 2 OTTHUMG00000032344.4 overlapping_locus +40062 chr20 HAVANA gene 35523186 35529652 1450.0 - 0 ENSG00000125975.13 protein_coding C20orf173 2 OTTHUMG00000032340.9 overlapping_locus +40063 chr20 HAVANA gene 35544430 35544747 318.0 - 0 ENSG00000224497.1 processed_pseudogene RPL36P4 1 OTTHUMG00000032338.1 pseudo_consens +40064 chr20 HAVANA gene 35542021 35557634 6012.0 + 0 ENSG00000125991.19 protein_coding ERGIC3 1 OTTHUMG00000032346.10 +40065 chr20 HAVANA gene 35588324 35588607 284.0 + 0 ENSG00000227401.1 processed_pseudogene RPL37P1 1 OTTHUMG00000032347.2 pseudo_consens +40066 chr20 HAVANA gene 35558737 35607562 9067.0 - 0 ENSG00000088340.15 transcribed_unitary_pseudogene FER1L4 2 OTTHUMG00000032354.12 +40067 chr20 HAVANA gene 35615892 35621049 2240.0 + 0 ENSG00000061656.9 protein_coding SPAG4 2 OTTHUMG00000032352.5 +40068 chr20 ENSEMBL gene 35643143 35643462 320.0 + 0 ENSG00000222460.1 misc_RNA RN7SKP271 3 +40069 chr20 ENSEMBL gene 35647328 35647430 103.0 - 0 ENSG00000252549.1 snRNA RNU6-759P 3 +40070 chr20 HAVANA gene 35626031 35664956 3608.0 - 0 ENSG00000214078.12 protein_coding CPNE1 1 OTTHUMG00000032356.33 ncRNA_host,overlapping_locus +40071 chr20 HAVANA gene 35648925 35664956 6702.0 - 0 ENSG00000244462.7 protein_coding RBM12 2 OTTHUMG00000032350.4 overlapping_locus +40072 chr20 HAVANA gene 35632340 35674544 872.0 - 0 ENSG00000272897.5 protein_coding AL109827.1 2 OTTHUMG00000186060.1 ncRNA_host,overlapping_locus +40073 chr20 HAVANA gene 35668055 35699359 6024.0 - 0 ENSG00000244005.12 protein_coding NFS1 2 OTTHUMG00000032361.11 overlapping_locus +40074 chr20 HAVANA gene 35699272 35700984 702.0 + 0 ENSG00000125995.15 protein_coding ROMO1 2 OTTHUMG00000032360.4 +40075 chr20 HAVANA gene 35701347 35742312 11936.0 - 0 ENSG00000131051.22 protein_coding RBM39 1 OTTHUMG00000032358.19 +40076 chr20 HAVANA gene 35752814 35753719 906.0 + 0 ENSG00000225357.3 processed_pseudogene RPF2P1 1 OTTHUMG00000032362.4 pseudo_consens +40077 chr20 ENSEMBL gene 35769785 35769867 83.0 - 0 ENSG00000283527.1 snRNA RF00026 3 +40078 chr20 HAVANA gene 35850674 35850915 242.0 - 0 ENSG00000234274.1 processed_pseudogene COX7BP2 1 OTTHUMG00000032365.1 pseudo_consens +40079 chr20 ENSEMBL gene 35853252 35853364 113.0 - 0 ENSG00000199676.1 misc_RNA RF00019 3 +40080 chr20 HAVANA gene 35878476 35878733 258.0 + 0 ENSG00000219608.3 processed_pseudogene HIGD1AP16 1 OTTHUMG00000032366.1 pseudo_consens,overlapping_locus +40081 chr20 ENSEMBL gene 35887659 35887801 143.0 + 0 ENSG00000201221.1 snRNA RNU4-40P 3 +40082 chr20 ENSEMBL gene 35928570 35928675 106.0 - 0 ENSG00000207053.1 snRNA RNU6-937P 3 +40083 chr20 HAVANA gene 35771974 35950381 8383.0 + 0 ENSG00000025293.16 protein_coding PHF20 2 OTTHUMG00000032367.7 ncRNA_host,overlapping_locus +40084 chr20 HAVANA gene 35953617 35959472 1996.0 - 0 ENSG00000171222.10 protein_coding SCAND1 2 OTTHUMG00000032370.2 +40085 chr20 HAVANA gene 35954564 36030700 5005.0 + 0 ENSG00000149646.12 protein_coding CNBD2 2 OTTHUMG00000032371.6 +40086 chr20 HAVANA gene 36045622 36050960 5339.0 - 0 ENSG00000260032.1 lincRNA NORAD 2 OTTHUMG00000175580.1 +40087 chr20 HAVANA gene 36064243 36064563 321.0 - 0 ENSG00000277235.1 lincRNA AL035420.3 2 OTTHUMG00000186786.1 +40088 chr20 HAVANA gene 36076018 36076601 584.0 - 0 ENSG00000231470.1 processed_pseudogene HMGB3P2 1 OTTHUMG00000032373.1 pseudo_consens +40089 chr20 HAVANA gene 36072441 36085260 682.0 + 0 ENSG00000234139.2 lincRNA AL035420.1 1 OTTHUMG00000032375.2 +40090 chr20 HAVANA gene 36086252 36088192 616.0 - 0 ENSG00000237063.1 lincRNA AL035420.2 2 OTTHUMG00000032376.1 +40091 chr20 HAVANA gene 36148726 36155760 2849.0 - 0 ENSG00000232406.6 antisense AL121895.1 2 OTTHUMG00000032377.2 +40092 chr20 HAVANA gene 36091504 36232799 9674.0 + 0 ENSG00000088367.21 protein_coding EPB41L1 2 OTTHUMG00000032378.12 +40093 chr20 HAVANA gene 36233851 36234297 447.0 + 0 ENSG00000278035.1 lincRNA AL121895.2 2 OTTHUMG00000186787.1 +40094 chr20 HAVANA gene 36236459 36270918 3101.0 + 0 ENSG00000131043.11 protein_coding AAR2 1 OTTHUMG00000032380.2 +40095 chr20 HAVANA gene 36306336 36528637 8789.0 + 0 ENSG00000080845.17 protein_coding DLGAP4 2 OTTHUMG00000032390.6 +40096 chr20 HAVANA gene 36541484 36551447 2821.0 + 0 ENSG00000101335.9 protein_coding MYL9 2 OTTHUMG00000032387.3 +40097 chr20 ENSEMBL gene 36561237 36561530 294.0 - 0 ENSG00000273986.1 misc_RNA RF00017 3 +40098 chr20 HAVANA gene 36507702 36573391 2437.0 - 0 ENSG00000232907.7 antisense DLGAP4-AS1 1 OTTHUMG00000032391.4 ncRNA_host +40099 chr20 HAVANA gene 36573488 36593950 3784.0 + 0 ENSG00000118707.9 protein_coding TGIF2 2 OTTHUMG00000172332.4 overlapping_locus +40100 chr20 HAVANA gene 36574553 36612384 918.0 + 0 ENSG00000259399.1 protein_coding TGIF2-RAB5IF 1 OTTHUMG00000032382.3 overlapping_locus +40101 chr20 HAVANA gene 36605734 36612557 1549.0 + 0 ENSG00000101084.17 protein_coding RAB5IF 1 OTTHUMG00000032384.3 overlapping_locus +40102 chr20 HAVANA gene 36620403 36621423 662.0 + 0 ENSG00000227688.2 unprocessed_pseudogene HNRNPA3P2 2 OTTHUMG00000032385.2 +40103 chr20 HAVANA gene 36612318 36646216 2757.0 - 0 ENSG00000101082.13 protein_coding SLA2 2 OTTHUMG00000032393.2 +40104 chr20 ENSEMBL gene 36668559 36668670 112.0 - 0 ENSG00000202255.1 misc_RNA RF00019 3 +40105 chr20 HAVANA gene 36651766 36746078 3248.0 - 0 ENSG00000101079.20 protein_coding NDRG3 1 OTTHUMG00000032398.3 ncRNA_host +40106 chr20 HAVANA gene 36751791 36773818 2739.0 - 0 ENSG00000149636.15 protein_coding DSN1 2 OTTHUMG00000032396.5 +40107 chr20 HAVANA gene 36777442 36863686 15128.0 - 0 ENSG00000149639.14 protein_coding SOGA1 1 OTTHUMG00000032395.7 +40108 chr20 ENSEMBL gene 36870099 36870402 304.0 + 0 ENSG00000242509.3 misc_RNA RN7SL156P 3 +40109 chr20 HAVANA gene 36876121 36894235 2553.0 + 0 ENSG00000101342.9 protein_coding TLDC2 1 OTTHUMG00000032400.3 +40110 chr20 HAVANA gene 36889773 36951901 11261.0 - 0 ENSG00000101347.9 protein_coding SAMHD1 2 OTTHUMG00000032402.6 +40111 chr20 HAVANA gene 37021743 37021984 242.0 - 0 ENSG00000231241.1 processed_pseudogene RPS3AP3 1 OTTHUMG00000032403.1 pseudo_consens,overlapping_locus +40112 chr20 HAVANA gene 37049254 37049707 454.0 + 0 ENSG00000226144.2 processed_pseudogene RPS27AP3 1 OTTHUMG00000032404.2 pseudo_consens +40113 chr20 HAVANA gene 36996349 37095995 5954.0 - 0 ENSG00000080839.11 protein_coding RBL1 2 OTTHUMG00000032406.4 overlapping_locus +40114 chr20 HAVANA gene 37095785 37097178 1394.0 + 0 ENSG00000269846.1 antisense AL136172.1 2 OTTHUMG00000187317.1 +40115 chr20 HAVANA gene 37165774 37166312 539.0 - 0 ENSG00000236159.1 processed_pseudogene AL031659.1 1 OTTHUMG00000032410.1 pseudo_consens,overlapping_locus +40116 chr20 HAVANA gene 37101226 37179588 3878.0 - 0 ENSG00000101353.14 protein_coding MROH8 2 OTTHUMG00000032407.5 overlapping_locus +40117 chr20 HAVANA gene 37178410 37241623 2819.0 + 0 ENSG00000118705.16 protein_coding RPN2 1 OTTHUMG00000032409.5 +40118 chr20 HAVANA gene 37251082 37261835 570.0 - 0 ENSG00000118702.9 protein_coding GHRH 2 OTTHUMG00000032413.3 +40119 chr20 HAVANA gene 37289638 37317260 2045.0 + 0 ENSG00000101363.12 protein_coding MANBAL 2 OTTHUMG00000032414.2 +40120 chr20 HAVANA gene 37344685 37406050 6468.0 + 0 ENSG00000197122.11 protein_coding SRC 2 OTTHUMG00000032417.3 +40121 chr20 HAVANA gene 37444733 37445534 802.0 - 0 ENSG00000213979.3 processed_pseudogene RPL7AP14 1 OTTHUMG00000032418.1 pseudo_consens +40122 chr20 HAVANA gene 37521206 37523693 1332.0 + 0 ENSG00000053438.9 protein_coding NNAT 2 OTTHUMG00000032420.4 +40123 chr20 HAVANA gene 37526642 37527060 419.0 - 0 ENSG00000276603.1 sense_intronic AL109614.1 2 OTTHUMG00000186254.2 overlapping_locus +40124 chr20 HAVANA gene 37492472 37527931 7869.0 - 0 ENSG00000166619.13 protein_coding BLCAP 2 OTTHUMG00000032419.7 overlapping_locus +40125 chr20 HAVANA gene 37530039 37530543 505.0 + 0 ENSG00000235044.1 processed_pseudogene PPIAP3 1 OTTHUMG00000032425.1 pseudo_consens +40126 chr20 HAVANA gene 37571103 37583935 449.0 + 0 ENSG00000274469.1 lincRNA LINC01746 2 OTTHUMG00000185859.2 +40127 chr20 HAVANA gene 37602852 37603185 334.0 - 0 ENSG00000228234.1 processed_pseudogene GLRXP1 1 OTTHUMG00000032423.1 pseudo_consens +40128 chr20 HAVANA gene 37619298 37623119 543.0 - 0 ENSG00000225759.1 lincRNA LINC00489 1 OTTHUMG00000046198.4 +40129 chr20 HAVANA gene 37676910 37683234 2112.0 + 0 ENSG00000204117.1 lincRNA AL162293.1 2 OTTHUMG00000140219.1 +40130 chr20 HAVANA gene 37693955 37872129 4148.0 + 0 ENSG00000132792.18 protein_coding CTNNBL1 1 OTTHUMG00000032428.5 +40131 chr20 HAVANA gene 37903104 37945350 1959.0 + 0 ENSG00000132821.11 protein_coding VSTM2L 2 OTTHUMG00000032430.3 +40132 chr20 ENSEMBL gene 37975156 37975481 326.0 - 0 ENSG00000199683.1 misc_RNA RN7SKP185 3 +40133 chr20 HAVANA gene 37983007 38033468 4479.0 - 0 ENSG00000101407.12 protein_coding TTI1 2 OTTHUMG00000032433.4 +40134 chr20 ENSEMBL gene 38098414 38098700 287.0 - 0 ENSG00000264767.2 misc_RNA RN7SL237P 3 +40135 chr20 HAVANA gene 38103524 38104961 1438.0 - 0 ENSG00000277550.1 lincRNA AL031651.1 2 OTTHUMG00000186833.1 +40136 chr20 HAVANA gene 38033546 38127780 5511.0 + 0 ENSG00000101413.11 protein_coding RPRD1B 2 OTTHUMG00000032434.6 +40137 chr20 HAVANA gene 38127387 38166578 8036.0 - 0 ENSG00000198959.11 protein_coding TGM2 2 OTTHUMG00000032437.4 +40138 chr20 HAVANA gene 38233251 38233799 549.0 - 0 ENSG00000277829.1 sense_intronic AL031651.2 2 OTTHUMG00000186837.1 overlapping_locus +40139 chr20 HAVANA gene 38210488 38260772 8083.0 - 0 ENSG00000149633.11 protein_coding KIAA1755 2 OTTHUMG00000032436.7 overlapping_locus +40140 chr20 HAVANA gene 38270778 38274020 3243.0 + 0 ENSG00000285100.1 lincRNA AL359555.2 2 OTTHUMG00000192448.1 +40141 chr20 HAVANA gene 38260175 38293892 3089.0 + 0 ENSG00000285347.1 antisense AL359555.4 2 OTTHUMG00000192447.1 overlapping_locus +40142 chr20 HAVANA gene 38260149 38304332 507.0 + 0 ENSG00000285144.1 antisense AL359555.3 2 OTTHUMG00000192446.1 overlapping_locus +40143 chr20 HAVANA gene 38288331 38326536 806.0 - 0 ENSG00000206249.3 antisense AL359555.1 1 OTTHUMG00000032439.1 +40144 chr20 HAVANA gene 38304123 38337505 2511.0 + 0 ENSG00000101425.13 protein_coding BPI 2 OTTHUMG00000032441.6 +40145 chr20 HAVANA gene 38346356 38377023 1961.0 + 0 ENSG00000129988.5 protein_coding LBP 2 OTTHUMG00000032447.3 +40146 chr20 HAVANA gene 38378825 38383179 378.0 + 0 ENSG00000275285.1 lincRNA AL391095.2 2 OTTHUMG00000186840.1 +40147 chr20 HAVANA gene 38406011 38416797 2004.0 - 0 ENSG00000224635.1 lincRNA AL391095.1 2 OTTHUMG00000032445.2 +40148 chr20 HAVANA gene 38418483 38419202 720.0 - 0 ENSG00000275401.1 lincRNA AL391095.3 2 OTTHUMG00000186875.1 +40149 chr20 ENSEMBL gene 38421647 38421774 128.0 - 0 ENSG00000277034.1 snoRNA RF00056 3 +40150 chr20 HAVANA gene 38425083 38425354 272.0 - 0 ENSG00000235408.5 snoRNA SNORA71B 2 OTTHUMG00000032446.2 overlapping_locus +40151 chr20 ENSEMBL gene 38427309 38427442 134.0 - 0 ENSG00000225091.3 snoRNA SNORA71A 3 +40152 chr20 ENSEMBL gene 38429670 38429803 134.0 - 0 ENSG00000201512.1 snoRNA SNORA71C 3 +40153 chr20 ENSEMBL gene 38433865 38433998 134.0 - 0 ENSG00000200354.1 snoRNA SNORA71D 3 +40154 chr20 HAVANA gene 38420588 38435353 4186.0 - 0 ENSG00000196756.11 processed_transcript SNHG17 2 OTTHUMG00000032442.3 ncRNA_host,overlapping_locus +40155 chr20 ENSEMBL gene 38442036 38442169 134.0 + 0 ENSG00000201811.1 snoRNA RF00056 3 +40156 chr20 ENSEMBL gene 38448084 38448215 132.0 + 0 ENSG00000274309.1 snoRNA SNORA71E 3 +40157 chr20 ENSEMBL gene 38449370 38449503 134.0 + 0 ENSG00000199266.1 snoRNA SNORA60 3 +40158 chr20 HAVANA gene 38446578 38450921 2813.0 + 0 ENSG00000174365.19 processed_transcript SNHG11 2 OTTHUMG00000032449.1 ncRNA_host +40159 chr20 ENSEMBL gene 38516563 38516632 70.0 + 0 ENSG00000275453.2 miRNA MIR548O2 3 +40160 chr20 HAVANA gene 38537758 38538458 701.0 + 0 ENSG00000231307.1 processed_pseudogene RPS3P2 1 OTTHUMG00000032448.1 pseudo_consens,overlapping_locus +40161 chr20 HAVANA gene 38472816 38578861 12633.0 + 0 ENSG00000170471.14 protein_coding RALGAPB 2 OTTHUMG00000140270.5 ncRNA_host,overlapping_locus +40162 chr20 HAVANA gene 38581195 38588463 1033.0 + 0 ENSG00000182035.11 protein_coding ADIG 1 OTTHUMG00000032451.6 +40163 chr20 HAVANA gene 38614913 38615476 564.0 - 0 ENSG00000213959.2 processed_pseudogene AL035419.1 1 OTTHUMG00000032452.1 pseudo_consens +40164 chr20 HAVANA gene 38601934 38651035 3195.0 + 0 ENSG00000124143.10 protein_coding ARHGAP40 2 OTTHUMG00000032453.3 +40165 chr20 ENSEMBL gene 38711821 38712103 283.0 - 0 ENSG00000277965.1 misc_RNA RF00017 3 +40166 chr20 HAVANA gene 38724462 38729372 2574.0 + 0 ENSG00000101438.3 protein_coding SLC32A1 2 OTTHUMG00000032457.1 +40167 chr20 ENSEMBL gene 38761528 38761842 315.0 + 0 ENSG00000199691.1 misc_RNA RN7SKP173 3 +40168 chr20 HAVANA gene 38748442 38772520 2565.0 + 0 ENSG00000101442.9 protein_coding ACTR5 2 OTTHUMG00000032456.3 ncRNA_host +40169 chr20 ENSEMBL gene 38872770 38873074 305.0 + 0 ENSG00000240474.3 misc_RNA RN7SL116P 3 +40170 chr20 HAVANA gene 38805705 38923024 6400.0 + 0 ENSG00000101445.9 protein_coding PPP1R16B 2 OTTHUMG00000032465.3 ncRNA_host +40171 chr20 HAVANA gene 38926312 38953106 2475.0 + 0 ENSG00000101447.14 protein_coding FAM83D 2 OTTHUMG00000032462.3 +40172 chr20 HAVANA gene 38955910 38956547 638.0 + 0 ENSG00000274825.1 lincRNA AL023803.2 2 OTTHUMG00000186878.1 +40173 chr20 HAVANA gene 38961925 38962111 187.0 - 0 ENSG00000261431.1 antisense AL023803.1 2 OTTHUMG00000175581.1 +40174 chr20 HAVANA gene 38962472 38962993 522.0 + 0 ENSG00000277581.1 sense_intronic AL023803.3 2 OTTHUMG00000186879.1 overlapping_locus +40175 chr20 HAVANA gene 38977711 38978422 712.0 - 0 ENSG00000223864.1 processed_pseudogene NPM1P19 1 OTTHUMG00000032459.1 pseudo_consens +40176 chr20 HAVANA gene 38962299 39039723 4930.0 + 0 ENSG00000101452.14 protein_coding DHX35 2 OTTHUMG00000032463.7 overlapping_locus +40177 chr20 HAVANA gene 39213777 39224748 1518.0 - 0 ENSG00000230324.1 lincRNA LINC01734 2 OTTHUMG00000032466.2 +40178 chr20 HAVANA gene 39329014 39329924 911.0 - 0 ENSG00000224357.1 processed_pseudogene ATG3P1 1 OTTHUMG00000032467.1 pseudo_consens +40179 chr20 ENSEMBL gene 39349094 39349392 299.0 - 0 ENSG00000275337.1 misc_RNA RN7SL680P 3 +40180 chr20 HAVANA gene 39785721 39813229 480.0 + 0 ENSG00000229976.1 lincRNA AL118523.1 1 OTTHUMG00000032468.1 +40181 chr20 HAVANA gene 39932922 39933239 318.0 - 0 ENSG00000234878.1 processed_pseudogene HSPE1P1 1 OTTHUMG00000032471.1 pseudo_consens +40182 chr20 HAVANA gene 40004477 40008529 822.0 + 0 ENSG00000237767.1 lincRNA LINC01370 1 OTTHUMG00000032469.1 +40183 chr20 HAVANA gene 40031585 40043889 640.0 + 0 ENSG00000233415.1 lincRNA AL133419.1 2 OTTHUMG00000032470.1 +40184 chr20 HAVANA gene 40121041 40126357 426.0 + 0 ENSG00000223410.1 lincRNA AL009050.1 1 OTTHUMG00000032472.1 +40185 chr20 HAVANA gene 40685848 40689240 3393.0 - 0 ENSG00000204103.3 protein_coding MAFB 2 OTTHUMG00000033052.2 +40186 chr20 HAVANA gene 40696499 40698616 1669.0 - 0 ENSG00000229771.2 lincRNA AL035665.1 2 OTTHUMG00000032473.2 +40187 chr20 ENSEMBL gene 40854119 40854229 111.0 - 0 ENSG00000238908.1 rRNA_pseudogene RNA5SP484 3 +40188 chr20 ENSEMBL gene 41024205 41024394 190.0 + 0 ENSG00000222612.1 snRNA RNU2-52P 3 +40189 chr20 HAVANA gene 41028818 41124487 3738.0 + 0 ENSG00000198900.5 protein_coding TOP1 2 OTTHUMG00000033057.2 +40190 chr20 HAVANA gene 41098329 41138003 1462.0 - 0 ENSG00000226648.1 antisense PLCG1-AS1 2 OTTHUMG00000032476.1 +40191 chr20 ENSEMBL gene 41169023 41169078 56.0 + 0 ENSG00000276169.1 miRNA MIR6871 3 +40192 chr20 HAVANA gene 41136960 41196801 9648.0 + 0 ENSG00000124181.14 protein_coding PLCG1 2 OTTHUMG00000033082.8 ncRNA_host,overlapping_locus +40193 chr20 HAVANA gene 41196647 41196938 292.0 - 0 ENSG00000272407.1 transcribed_processed_pseudogene AL022394.1 2 OTTHUMG00000185618.1 overlapping_locus +40194 chr20 HAVANA gene 41196691 41197157 467.0 + 0 ENSG00000242748.1 transcribed_processed_pseudogene RPL23AP81 1 OTTHUMG00000032477.2 pseudo_consens,overlapping_locus +40195 chr20 ENSEMBL gene 41290280 41290577 298.0 - 0 ENSG00000263989.2 misc_RNA RN7SL615P 3 +40196 chr20 HAVANA gene 41178448 41317672 11621.0 - 0 ENSG00000174306.21 protein_coding ZHX3 1 OTTHUMG00000032481.7 ncRNA_host,overlapping_locus +40197 chr20 HAVANA gene 41331123 41331660 538.0 + 0 ENSG00000235102.1 processed_pseudogene ADI1P1 1 OTTHUMG00000032482.1 pseudo_consens +40198 chr20 HAVANA gene 41340920 41360582 4568.0 + 0 ENSG00000132793.11 protein_coding LPIN3 2 OTTHUMG00000033056.3 +40199 chr20 HAVANA gene 41359966 41366827 3796.0 - 0 ENSG00000183798.4 protein_coding EMILIN3 2 OTTHUMG00000046304.2 +40200 chr20 HAVANA gene 41382383 41383107 725.0 + 0 ENSG00000229398.1 processed_pseudogene AL031667.1 2 OTTHUMG00000032484.1 +40201 chr20 HAVANA gene 41459354 41461944 323.0 - 0 ENSG00000235088.1 processed_pseudogene AL031667.2 2 OTTHUMG00000032483.1 overlapping_locus +40202 chr20 HAVANA gene 41485571 41486225 655.0 - 0 ENSG00000273951.1 sense_intronic AL031667.3 2 OTTHUMG00000186892.1 overlapping_locus +40203 chr20 HAVANA gene 41547422 41547922 501.0 + 0 ENSG00000232493.2 processed_pseudogene RPL12P11 1 OTTHUMG00000032488.1 pseudo_consens +40204 chr20 HAVANA gene 41402101 41618494 14126.0 - 0 ENSG00000124177.14 protein_coding CHD6 2 OTTHUMG00000032487.3 overlapping_locus +40205 chr20 ENSEMBL gene 41684986 41685091 106.0 - 0 ENSG00000252386.1 snRNA RNU6-1018P 3 +40206 chr20 ENSEMBL gene 41712479 41712600 122.0 - 0 ENSG00000212224.1 snoRNA RF00568 3 +40207 chr20 HAVANA gene 41997131 41999397 2267.0 - 0 ENSG00000223651.1 processed_pseudogene AL049812.1 1 OTTHUMG00000032490.1 pseudo_consens +40208 chr20 HAVANA gene 42014034 42015478 417.0 - 0 ENSG00000228959.1 lincRNA AL049812.3 1 OTTHUMG00000032491.1 +40209 chr20 HAVANA gene 41991140 42063969 594.0 + 0 ENSG00000225458.1 antisense AL049812.2 2 OTTHUMG00000032492.1 +40210 chr20 HAVANA gene 42606694 42607559 348.0 + 0 ENSG00000229892.1 processed_pseudogene AL035666.1 1 OTTHUMG00000032493.1 pseudo_consens +40211 chr20 HAVANA gene 42685404 42688562 2133.0 + 0 ENSG00000229042.2 antisense AL031656.1 2 OTTHUMG00000032494.2 +40212 chr20 HAVANA gene 42968743 42971492 1586.0 + 0 ENSG00000227599.1 antisense AL031676.1 2 OTTHUMG00000032495.1 +40213 chr20 ENSEMBL gene 43063326 43063609 284.0 + 0 ENSG00000223190.1 misc_RNA RN7SKP100 3 +40214 chr20 HAVANA gene 42072752 43189970 12943.0 - 0 ENSG00000196090.12 protein_coding PTPRT 2 OTTHUMG00000033040.5 +40215 chr20 HAVANA gene 43190101 43202599 2232.0 + 0 ENSG00000233508.2 lincRNA AL021395.1 2 OTTHUMG00000032498.2 +40216 chr20 ENSEMBL gene 43222206 43222509 304.0 + 0 ENSG00000240639.3 misc_RNA RN7SL666P 3 +40217 chr20 HAVANA gene 43230760 43231260 501.0 + 0 ENSG00000226038.5 processed_pseudogene PPIAP21 1 OTTHUMG00000032496.1 pseudo_consens +40218 chr20 ENSEMBL gene 43304555 43304679 125.0 + 0 ENSG00000252193.1 scaRNA RF00426 3 +40219 chr20 HAVANA gene 43388642 43389041 400.0 - 0 ENSG00000237555.1 processed_pseudogene AL031681.1 1 OTTHUMG00000032499.1 pseudo_consens +40220 chr20 ENSEMBL gene 43405473 43405578 106.0 + 0 ENSG00000201021.1 snRNA RNU6-743P 3 +40221 chr20 HAVANA gene 43423196 43423538 343.0 - 0 ENSG00000233711.1 processed_pseudogene EIF4EBP2P1 1 OTTHUMG00000032500.1 pseudo_consens +40222 chr20 ENSEMBL gene 43451159 43451260 102.0 - 0 ENSG00000206998.1 misc_RNA RF00019 3 +40223 chr20 HAVANA gene 43457928 43464247 4593.0 + 0 ENSG00000124193.14 protein_coding SRSF6 2 OTTHUMG00000032502.5 +40224 chr20 ENSEMBL gene 43473013 43473119 107.0 + 0 ENSG00000201372.1 snRNA RNU6-1251P 3 +40225 chr20 HAVANA gene 43523261 43523572 312.0 - 0 ENSG00000234271.1 processed_pseudogene Z98752.2 1 OTTHUMG00000032504.1 pseudo_consens +40226 chr20 HAVANA gene 43549389 43550949 518.0 - 0 ENSG00000226143.1 antisense Z98752.1 2 OTTHUMG00000032505.1 +40227 chr20 HAVANA gene 43489442 43550950 15550.0 + 0 ENSG00000185513.16 protein_coding L3MBTL1 2 OTTHUMG00000032503.23 overlapping_locus +40228 chr20 HAVANA gene 43540171 43569498 566.0 + 0 ENSG00000277611.1 protein_coding Z98752.3 2 OTTHUMG00000187507.1 overlapping_locus +40229 chr20 HAVANA gene 43558968 43588237 4374.0 + 0 ENSG00000101049.15 protein_coding SGK2 2 OTTHUMG00000033054.10 overlapping_locus +40230 chr20 HAVANA gene 43590009 43590596 588.0 - 0 ENSG00000282876.1 lincRNA Z98752.4 2 OTTHUMG00000191516.1 +40231 chr20 HAVANA gene 43590931 43647296 2542.0 + 0 ENSG00000101052.12 protein_coding IFT52 2 OTTHUMG00000032513.1 +40232 chr20 HAVANA gene 43652523 43653291 435.0 + 0 ENSG00000215467.2 processed_pseudogene RPL27AP 1 OTTHUMG00000032508.1 pseudo_consens +40233 chr20 HAVANA gene 43667019 43716496 2777.0 + 0 ENSG00000101057.15 protein_coding MYBL2 2 OTTHUMG00000033062.1 +40234 chr20 HAVANA gene 43726164 43726998 835.0 - 0 ENSG00000124196.5 protein_coding GTSF1L 2 OTTHUMG00000032510.1 +40235 chr20 ENSEMBL gene 43796437 43796543 107.0 - 0 ENSG00000206801.1 snRNA RNU6-639P 3 +40236 chr20 HAVANA gene 43894720 43895468 524.0 + 0 ENSG00000233277.1 lincRNA LINC01728 1 OTTHUMG00000032515.1 +40237 chr20 ENSEMBL gene 44007248 44007537 290.0 + 0 ENSG00000241229.3 misc_RNA RN7SL443P 3 +40238 chr20 HAVANA gene 43914864 44069616 3223.0 + 0 ENSG00000124191.17 protein_coding TOX2 2 OTTHUMG00000032517.5 ncRNA_host +40239 chr20 HAVANA gene 44111695 44187578 5943.0 - 0 ENSG00000149596.6 protein_coding JPH2 2 OTTHUMG00000033037.1 +40240 chr20 HAVANA gene 44196496 44210791 1712.0 - 0 ENSG00000132823.10 protein_coding OSER1 2 OTTHUMG00000032518.2 +40241 chr20 HAVANA gene 44210960 44226027 2186.0 + 0 ENSG00000223891.5 lincRNA OSER1-DT 2 OTTHUMG00000032521.4 +40242 chr20 HAVANA gene 44247099 44280917 3385.0 + 0 ENSG00000124194.16 protein_coding GDAP1L1 2 OTTHUMG00000032530.2 +40243 chr20 HAVANA gene 44302838 44311169 4597.0 - 0 ENSG00000197296.5 protein_coding FITM2 2 OTTHUMG00000032522.3 +40244 chr20 ENSEMBL gene 44344839 44344933 95.0 + 0 ENSG00000201363.2 misc_RNA RF00019 3 +40245 chr20 HAVANA gene 44336986 44351235 1377.0 + 0 ENSG00000101074.3 protein_coding R3HDML 2 OTTHUMG00000032524.1 ncRNA_host +40246 chr20 HAVANA gene 44347552 44355185 906.0 - 0 ENSG00000226812.2 antisense AL117382.1 2 OTTHUMG00000032526.2 +40247 chr20 HAVANA gene 44389624 44391537 403.0 - 0 ENSG00000233376.1 antisense AL117382.2 1 OTTHUMG00000032527.1 overlapping_locus +40248 chr20 HAVANA gene 44372746 44395706 912.0 - 0 ENSG00000229005.2 antisense HNF4A-AS1 2 OTTHUMG00000032525.2 overlapping_locus +40249 chr20 ENSEMBL gene 44408120 44408203 84.0 + 0 ENSG00000266151.1 miRNA MIR3646 3 +40250 chr20 HAVANA gene 44355700 44434596 7311.0 + 0 ENSG00000101076.16 protein_coding HNF4A 1 OTTHUMG00000032531.6 ncRNA_host +40251 chr20 HAVANA gene 44436172 44465349 1719.0 - 0 ENSG00000168746.8 lincRNA LINC01620 2 OTTHUMG00000130221.2 +40252 chr20 HAVANA gene 44466564 44466842 279.0 - 0 ENSG00000226243.1 processed_pseudogene RPL37AP1 1 OTTHUMG00000032532.1 pseudo_consens +40253 chr20 HAVANA gene 44475886 44494603 7044.0 + 0 ENSG00000124120.10 protein_coding TTPAL 1 OTTHUMG00000032536.5 +40254 chr20 HAVANA gene 44496221 44522109 4683.0 - 0 ENSG00000132824.13 protein_coding SERINC3 2 OTTHUMG00000033087.3 +40255 chr20 HAVANA gene 44531785 44624247 2496.0 + 0 ENSG00000168734.13 protein_coding PKIG 1 OTTHUMG00000033065.2 +40256 chr20 HAVANA gene 44619522 44652233 2852.0 - 0 ENSG00000196839.12 protein_coding ADA 1 OTTHUMG00000033081.3 +40257 chr20 HAVANA gene 44656451 44663498 1001.0 - 0 ENSG00000283440.1 lincRNA LINC01260 2 OTTHUMG00000032542.3 overlapping_locus +40258 chr20 HAVANA gene 44656451 44696096 1416.0 - 0 ENSG00000132832.10 lincRNA AL139352.1 2 OTTHUMG00000191827.1 overlapping_locus +40259 chr20 HAVANA gene 44714844 44728509 4981.0 + 0 ENSG00000064205.10 protein_coding WISP2 2 OTTHUMG00000033071.2 +40260 chr20 HAVANA gene 44694892 44746021 1226.0 - 0 ENSG00000244558.5 antisense KCNK15-AS1 2 OTTHUMG00000032545.1 overlapping_locus +40261 chr20 HAVANA gene 44746642 44747201 560.0 + 0 ENSG00000276223.1 sense_intronic AL118522.1 2 OTTHUMG00000186895.1 overlapping_locus +40262 chr20 HAVANA gene 44745780 44752313 2599.0 + 0 ENSG00000124249.6 protein_coding KCNK15 2 OTTHUMG00000032544.3 overlapping_locus +40263 chr20 HAVANA gene 44751808 44810338 5206.0 - 0 ENSG00000101098.12 protein_coding RIMS4 2 OTTHUMG00000032546.4 +40264 chr20 HAVANA gene 44841925 44842539 615.0 - 0 ENSG00000277708.1 unprocessed_pseudogene PGBD4P2 2 OTTHUMG00000187975.1 +40265 chr20 HAVANA gene 44885676 44908532 7933.0 + 0 ENSG00000166913.12 protein_coding YWHAB 2 OTTHUMG00000032549.6 +40266 chr20 HAVANA gene 44910062 44959035 4984.0 + 0 ENSG00000101104.12 protein_coding PABPC1L 2 OTTHUMG00000032553.8 +40267 chr20 HAVANA gene 44942130 44960486 2062.0 - 0 ENSG00000025772.7 protein_coding TOMM34 2 OTTHUMG00000032552.3 +40268 chr20 HAVANA gene 44963794 44966402 2065.0 - 0 ENSG00000227477.1 lincRNA STK4-AS1 2 OTTHUMG00000032555.1 +40269 chr20 ENSEMBL gene 45004348 45004454 107.0 + 0 ENSG00000252021.1 misc_RNA RF00019 3 +40270 chr20 HAVANA gene 44966474 45079959 9075.0 + 0 ENSG00000101109.11 protein_coding STK4 2 OTTHUMG00000033059.5 ncRNA_host +40271 chr20 HAVANA gene 45092310 45101112 4538.0 - 0 ENSG00000124134.8 protein_coding KCNS1 2 OTTHUMG00000033079.3 +40272 chr20 HAVANA gene 45109452 45115172 1044.0 - 0 ENSG00000175121.11 protein_coding WFDC5 2 OTTHUMG00000046411.1 +40273 chr20 HAVANA gene 45123425 45124465 775.0 - 0 ENSG00000168703.5 protein_coding WFDC12 2 OTTHUMG00000046412.1 +40274 chr20 HAVANA gene 45137706 45138976 514.0 - 0 ENSG00000283142.1 transcribed_unprocessed_pseudogene AL049767.1 2 OTTHUMG00000191819.2 +40275 chr20 HAVANA gene 45174876 45176544 577.0 + 0 ENSG00000124102.4 protein_coding PI3 2 OTTHUMG00000032567.3 +40276 chr20 HAVANA gene 45206997 45209772 1662.0 + 0 ENSG00000124233.11 protein_coding SEMG1 2 OTTHUMG00000032565.3 +40277 chr20 HAVANA gene 45221300 45224458 2051.0 + 0 ENSG00000124157.6 protein_coding SEMG2 2 OTTHUMG00000032566.1 +40278 chr20 HAVANA gene 45229817 45230191 222.0 + 0 ENSG00000233352.1 unprocessed_pseudogene AL035660.1 2 OTTHUMG00000154638.1 +40279 chr20 HAVANA gene 45230868 45233331 556.0 + 0 ENSG00000243995.3 transcribed_unprocessed_pseudogene AL035660.2 1 OTTHUMG00000032569.5 +40280 chr20 HAVANA gene 45252239 45254564 596.0 - 0 ENSG00000124107.5 protein_coding SLPI 2 OTTHUMG00000033075.3 +40281 chr20 HAVANA gene 45293445 45308529 2467.0 - 0 ENSG00000124159.15 protein_coding MATN4 2 OTTHUMG00000033043.2 +40282 chr20 HAVANA gene 45306851 45317824 2763.0 + 0 ENSG00000124232.10 protein_coding RBPJL 2 OTTHUMG00000033055.3 +40283 chr20 HAVANA gene 45345115 45345823 709.0 - 0 ENSG00000275894.1 sense_intronic AL021578.1 2 OTTHUMG00000186913.1 overlapping_locus +40284 chr20 HAVANA gene 45325288 45348424 2613.0 - 0 ENSG00000124145.6 protein_coding SDC4 2 OTTHUMG00000033083.1 overlapping_locus +40285 chr20 HAVANA gene 45361937 45376798 6117.0 + 0 ENSG00000204070.9 protein_coding SYS1 1 OTTHUMG00000032579.3 overlapping_locus +40286 chr20 HAVANA gene 45388347 45388705 359.0 - 0 ENSG00000232880.1 processed_pseudogene NDUFB4P10 1 OTTHUMG00000032580.1 pseudo_consens,overlapping_locus +40287 chr20 HAVANA gene 45372563 45407889 3040.0 - 0 ENSG00000124251.10 protein_coding TP53TG5 2 OTTHUMG00000032582.3 overlapping_locus +40288 chr20 HAVANA gene 45406057 45410610 2764.0 + 0 ENSG00000244274.7 protein_coding DBNDD2 2 OTTHUMG00000032576.2 overlapping_locus +40289 chr20 HAVANA gene 45363200 45410610 1402.0 + 0 ENSG00000254806.5 protein_coding SYS1-DBNDD2 2 OTTHUMG00000166214.1 overlapping_locus +40290 chr20 ENSEMBL gene 45425510 45425573 64.0 + 0 ENSG00000273555.1 miRNA MIR6812 3 +40291 chr20 HAVANA gene 45435272 45448325 1794.0 - 0 ENSG00000277022.1 lincRNA AL031663.3 2 OTTHUMG00000186919.1 +40292 chr20 HAVANA gene 45416067 45456934 19670.0 + 0 ENSG00000124155.17 protein_coding PIGT 2 OTTHUMG00000032574.23 ncRNA_host +40293 chr20 HAVANA gene 45469706 45481532 1382.0 + 0 ENSG00000101443.17 protein_coding WFDC2 1 OTTHUMG00000032594.5 +40294 chr20 HAVANA gene 45487613 45490248 355.0 + 0 ENSG00000237464.1 antisense AL031663.2 2 OTTHUMG00000032591.3 +40295 chr20 HAVANA gene 45490818 45491671 854.0 - 0 ENSG00000237068.1 processed_pseudogene RPL5P2 1 OTTHUMG00000032583.1 pseudo_consens +40296 chr20 HAVANA gene 45512461 45515624 476.0 - 0 ENSG00000101446.7 protein_coding SPINT3 2 OTTHUMG00000032585.5 +40297 chr20 HAVANA gene 45536796 45537014 219.0 - 0 ENSG00000232135.1 processed_pseudogene AL031663.1 1 OTTHUMG00000032590.1 pseudo_consens,overlapping_locus +40298 chr20 HAVANA gene 45534196 45539495 792.0 - 0 ENSG00000243543.8 protein_coding WFDC6 2 OTTHUMG00000046354.6 overlapping_locus +40299 chr20 HAVANA gene 45539983 45540227 245.0 - 0 ENSG00000229900.1 processed_pseudogene HSPD1P21 1 OTTHUMG00000032589.1 pseudo_consens,overlapping_locus +40300 chr20 HAVANA gene 45536986 45547426 1156.0 - 0 ENSG00000249139.1 protein_coding EPPIN-WFDC6 1 OTTHUMG00000161548.1 overlapping_locus +40301 chr20 HAVANA gene 45540626 45547752 6238.0 - 0 ENSG00000101448.13 protein_coding EPPIN 2 OTTHUMG00000032588.5 overlapping_locus +40302 chr20 ENSEMBL gene 45559758 45559876 119.0 - 0 ENSG00000201923.1 rRNA_pseudogene RNA5SP485 3 +40303 chr20 HAVANA gene 45567990 45568807 818.0 - 0 ENSG00000230860.1 processed_pseudogene CCNB1IP1P2 1 OTTHUMG00000032597.1 pseudo_consens,overlapping_locus +40304 chr20 HAVANA gene 45551153 45579326 1529.0 - 0 ENSG00000158901.11 protein_coding WFDC8 2 OTTHUMG00000046342.1 overlapping_locus +40305 chr20 HAVANA gene 45629526 45631196 706.0 + 0 ENSG00000180305.4 protein_coding WFDC10A 2 OTTHUMG00000046331.2 +40306 chr20 HAVANA gene 45607939 45631268 659.0 - 0 ENSG00000180205.3 protein_coding WFDC9 2 OTTHUMG00000046332.1 +40307 chr20 HAVANA gene 45640486 45641370 885.0 - 0 ENSG00000235508.3 processed_pseudogene RPS2P7 2 OTTHUMG00000032603.1 +40308 chr20 HAVANA gene 45648563 45670270 654.0 - 0 ENSG00000180083.10 protein_coding WFDC11 2 OTTHUMG00000046330.1 +40309 chr20 HAVANA gene 45684653 45705019 630.0 - 0 ENSG00000182931.9 protein_coding WFDC10B 2 OTTHUMG00000130227.2 +40310 chr20 ENSEMBL gene 45705102 45705180 79.0 - 0 ENSG00000266071.1 miRNA MIR3617 3 +40311 chr20 HAVANA gene 45702016 45708817 1372.0 + 0 ENSG00000168634.4 protein_coding WFDC13 2 OTTHUMG00000046333.1 +40312 chr20 HAVANA gene 45722351 45725830 512.0 + 0 ENSG00000149651.3 protein_coding SPINT4 2 OTTHUMG00000130153.2 +40313 chr20 HAVANA gene 45745737 45746287 551.0 - 0 ENSG00000226188.2 processed_pseudogene HNRNPA1P3 2 OTTHUMG00000032613.1 +40314 chr20 HAVANA gene 45749920 45750074 155.0 + 0 ENSG00000168630.3 processed_pseudogene SPINT5P 2 OTTHUMG00000032611.2 +40315 chr20 ENSEMBL gene 45778698 45778823 126.0 + 0 ENSG00000221046.1 snRNA RNU6ATAC38P 3 +40316 chr20 HAVANA gene 45747944 45791932 2405.0 - 0 ENSG00000124116.18 protein_coding WFDC3 1 OTTHUMG00000032614.4 +40317 chr20 HAVANA gene 45791937 45811427 1883.0 + 0 ENSG00000101457.12 protein_coding DNTTIP1 1 OTTHUMG00000032610.2 +40318 chr20 HAVANA gene 45812576 45816957 1286.0 + 0 ENSG00000175063.16 protein_coding UBE2C 2 OTTHUMG00000033038.2 +40319 chr20 HAVANA gene 45823214 45833745 876.0 - 0 ENSG00000101470.9 protein_coding TNNC2 2 OTTHUMG00000032623.4 +40320 chr20 HAVANA gene 45833810 45843275 4066.0 + 0 ENSG00000124104.18 protein_coding SNX21 2 OTTHUMG00000032624.2 +40321 chr20 ENSEMBL gene 45847630 45847940 311.0 - 0 ENSG00000277051.1 misc_RNA RF00017 3 +40322 chr20 HAVANA gene 45841721 45857406 4213.0 - 0 ENSG00000101473.16 protein_coding ACOT8 1 OTTHUMG00000033045.7 ncRNA_host +40323 chr20 HAVANA gene 45857617 45879122 2773.0 + 0 ENSG00000132801.6 protein_coding ZSWIM3 2 OTTHUMG00000032627.1 +40324 chr20 HAVANA gene 45881227 45885266 2769.0 + 0 ENSG00000168612.4 protein_coding ZSWIM1 2 OTTHUMG00000074023.2 +40325 chr20 HAVANA gene 45886489 45887635 757.0 - 0 ENSG00000149634.4 protein_coding SPATA25 2 OTTHUMG00000032628.1 +40326 chr20 HAVANA gene 45888625 45891287 1301.0 - 0 ENSG00000124257.6 protein_coding NEURL2 1 OTTHUMG00000032626.2 +40327 chr20 HAVANA gene 45892694 45893419 569.0 - 0 ENSG00000271984.1 antisense AL008726.1 2 OTTHUMG00000185813.1 +40328 chr20 HAVANA gene 45890144 45898820 5856.0 + 0 ENSG00000064601.18 protein_coding CTSA 2 OTTHUMG00000033078.16 +40329 chr20 HAVANA gene 45898621 45912155 2541.0 - 0 ENSG00000100979.14 protein_coding PLTP 2 OTTHUMG00000033047.4 +40330 chr20 HAVANA gene 45926518 45935055 8538.0 - 0 ENSG00000285796.1 antisense AL162458.1 2 OTTHUMG00000192646.1 +40331 chr20 HAVANA gene 45934628 45948023 3219.0 + 0 ENSG00000100982.11 protein_coding PCIF1 2 OTTHUMG00000032635.3 +40332 chr20 HAVANA gene 45948653 45972172 7521.0 - 0 ENSG00000198026.7 protein_coding ZNF335 2 OTTHUMG00000032637.1 +40333 chr20 HAVANA gene 45975249 45976075 526.0 - 0 ENSG00000235525.1 processed_pseudogene FTLP1 1 OTTHUMG00000032630.1 pseudo_consens +40334 chr20 HAVANA gene 46008908 46016561 2336.0 + 0 ENSG00000100985.7 protein_coding MMP9 2 OTTHUMG00000033044.1 +40335 chr20 HAVANA gene 46013500 46022073 2244.0 - 0 ENSG00000204044.6 antisense SLC12A5-AS1 2 OTTHUMG00000032629.3 +40336 chr20 HAVANA gene 46021690 46060152 8909.0 + 0 ENSG00000124140.13 protein_coding SLC12A5 1 OTTHUMG00000032638.8 +40337 chr20 HAVANA gene 46060985 46089952 3220.0 - 0 ENSG00000124160.11 protein_coding NCOA5 2 OTTHUMG00000032639.4 +40338 chr20 HAVANA gene 46099518 46100176 659.0 + 0 ENSG00000213820.3 processed_pseudogene RPL13P2 1 OTTHUMG00000032642.1 pseudo_consens +40339 chr20 HAVANA gene 46118272 46129863 2527.0 + 0 ENSG00000101017.13 protein_coding CD40 2 OTTHUMG00000033053.3 +40340 chr20 HAVANA gene 46168404 46171237 2137.0 - 0 ENSG00000229957.1 lincRNA AL031687.1 2 OTTHUMG00000032644.1 +40341 chr20 HAVANA gene 46173733 46308498 4929.0 - 0 ENSG00000149654.9 protein_coding CDH22 2 OTTHUMG00000033073.1 +40342 chr20 HAVANA gene 46345980 46364458 7708.0 - 0 ENSG00000080189.14 protein_coding SLC35C2 2 OTTHUMG00000033050.4 +40343 chr20 HAVANA gene 46364551 46390885 594.0 + 0 ENSG00000273828.1 antisense AL133227.1 2 OTTHUMG00000186920.3 +40344 chr20 HAVANA gene 46366049 46432985 6598.0 - 0 ENSG00000062598.17 protein_coding ELMO2 2 OTTHUMG00000033070.6 overlapping_locus +40345 chr20 HAVANA gene 46414228 46459276 2722.0 - 0 ENSG00000215452.5 transcribed_unitary_pseudogene ZNF663P 2 OTTHUMG00000032648.3 overlapping_locus +40346 chr20 HAVANA gene 46463719 46477232 1994.0 - 0 ENSG00000225849.2 transcribed_processed_pseudogene MKRN7P 2 OTTHUMG00000032649.2 overlapping_locus +40347 chr20 HAVANA gene 46484461 46492640 1996.0 + 0 ENSG00000184617.10 unprocessed_pseudogene ZNF840P 2 OTTHUMG00000032647.2 +40348 chr20 HAVANA gene 46455033 46496731 4273.0 - 0 ENSG00000283757.1 processed_transcript AL031686.1 2 OTTHUMG00000191910.1 overlapping_locus +40349 chr20 HAVANA gene 46499630 46513559 6865.0 - 0 ENSG00000198185.11 protein_coding ZNF334 2 OTTHUMG00000032654.5 +40350 chr20 HAVANA gene 46540946 46550574 2043.0 - 0 ENSG00000149635.2 protein_coding OCSTAMP 2 OTTHUMG00000032652.2 +40351 chr20 HAVANA gene 46681676 46682375 700.0 - 0 ENSG00000273893.1 sense_intronic AL133520.1 2 OTTHUMG00000186929.1 overlapping_locus +40352 chr20 HAVANA gene 46557823 46684467 6055.0 - 0 ENSG00000158296.13 protein_coding SLC13A3 1 OTTHUMG00000033042.8 overlapping_locus +40353 chr20 HAVANA gene 46684365 46689779 3520.0 - 0 ENSG00000172315.5 protein_coding TP53RK 2 OTTHUMG00000085887.1 overlapping_locus +40354 chr20 HAVANA gene 46689659 46690289 631.0 + 0 ENSG00000271784.1 lincRNA AL031055.1 2 OTTHUMG00000185332.1 +40355 chr20 HAVANA gene 46709487 46736347 5000.0 + 0 ENSG00000197496.5 protein_coding SLC2A10 2 OTTHUMG00000032657.4 +40356 chr20 ENSEMBL gene 46859333 46859672 340.0 + 0 ENSG00000222874.1 misc_RNA RN7SKP33 3 +40357 chr20 HAVANA gene 46863563 46864104 542.0 - 0 ENSG00000235922.1 processed_pseudogene AL354766.1 1 OTTHUMG00000032660.2 pseudo_consens +40358 chr20 HAVANA gene 46901143 46901726 423.0 - 0 ENSG00000236028.1 lincRNA AL354766.2 2 OTTHUMG00000032661.1 +40359 chr20 HAVANA gene 46997596 46998488 893.0 + 0 ENSG00000226769.1 processed_pseudogene GAPDHP54 1 OTTHUMG00000032662.1 pseudo_consens,overlapping_locus +40360 chr20 HAVANA gene 47071865 47072236 372.0 + 0 ENSG00000239783.1 processed_pseudogene AL121776.1 2 OTTHUMG00000032663.1 overlapping_locus +40361 chr20 HAVANA gene 47160838 47161700 863.0 - 0 ENSG00000215450.2 processed_pseudogene AL022342.1 1 OTTHUMG00000032664.3 pseudo_consens +40362 chr20 ENSEMBL gene 47166967 47167058 92.0 + 0 ENSG00000264901.1 miRNA MIR3616 3 +40363 chr20 HAVANA gene 46894624 47188844 3618.0 + 0 ENSG00000064655.18 protein_coding EYA2 2 OTTHUMG00000033041.8 ncRNA_host,overlapping_locus +40364 chr20 HAVANA gene 47318502 47320754 2253.0 + 0 ENSG00000267882.2 antisense AL031666.2 2 OTTHUMG00000187320.2 +40365 chr20 HAVANA gene 47348137 47349142 1006.0 - 0 ENSG00000273451.1 sense_intronic AL031666.3 2 OTTHUMG00000185861.1 overlapping_locus +40366 chr20 HAVANA gene 47352561 47354633 1809.0 + 0 ENSG00000231119.2 antisense AL031666.1 1 OTTHUMG00000032668.2 +40367 chr20 HAVANA gene 47209214 47356889 7625.0 - 0 ENSG00000101040.19 protein_coding ZMYND8 1 OTTHUMG00000032667.11 overlapping_locus +40368 chr20 HAVANA gene 47391929 47412327 750.0 - 0 ENSG00000224565.1 lincRNA LINC01754 2 OTTHUMG00000032669.1 +40369 chr20 HAVANA gene 47478214 47479010 326.0 - 0 ENSG00000234075.1 processed_pseudogene RPL35AP 1 OTTHUMG00000032670.2 pseudo_consens +40370 chr20 ENSEMBL gene 47484278 47484381 104.0 - 0 ENSG00000202186.1 snRNA RNU6-497P 3 +40371 chr20 ENSEMBL gene 47492978 47493085 108.0 - 0 ENSG00000201742.1 snRNA RNU6-563P 3 +40372 chr20 HAVANA gene 47630266 47631438 860.0 - 0 ENSG00000229853.1 processed_pseudogene AL034418.1 1 OTTHUMG00000032671.1 pseudo_consens +40373 chr20 HAVANA gene 47501902 47656877 8402.0 + 0 ENSG00000124151.18 protein_coding NCOA3 2 OTTHUMG00000033061.3 +40374 chr20 HAVANA gene 47677901 47686297 2437.0 + 0 ENSG00000255438.2 antisense AL354813.1 2 OTTHUMG00000167583.2 +40375 chr20 HAVANA gene 47656348 47786616 6657.0 - 0 ENSG00000196562.14 protein_coding SULF2 2 OTTHUMG00000032675.9 +40376 chr20 ENSEMBL gene 47826969 47827044 76.0 - 0 ENSG00000238950.1 snRNA RNU7-173P 3 +40377 chr20 HAVANA gene 47859788 47860672 885.0 + 0 ENSG00000215448.3 processed_pseudogene SRMP1 1 OTTHUMG00000032673.1 pseudo_consens +40378 chr20 ENSEMBL gene 47873191 47873273 83.0 + 0 ENSG00000251770.1 rRNA_pseudogene RNA5SP486 3 +40379 chr20 ENSEMBL gene 47904348 47904423 76.0 + 0 ENSG00000238785.1 snRNA RNU7-92P 3 +40380 chr20 HAVANA gene 47950799 47952055 425.0 + 0 ENSG00000234967.1 lincRNA AL357558.2 1 OTTHUMG00000032676.1 +40381 chr20 HAVANA gene 47958022 47958603 456.0 + 0 ENSG00000228503.1 lincRNA AL357558.1 2 OTTHUMG00000032677.1 +40382 chr20 HAVANA gene 47983404 47984313 450.0 + 0 ENSG00000229522.1 lincRNA LINC01523 1 OTTHUMG00000032679.1 +40383 chr20 HAVANA gene 47980488 47988744 429.0 - 0 ENSG00000237423.1 lincRNA LINC01522 1 OTTHUMG00000032678.1 +40384 chr20 HAVANA gene 48073869 48074188 320.0 + 0 ENSG00000276923.1 lincRNA AL139351.1 2 OTTHUMG00000186935.1 +40385 chr20 HAVANA gene 48359950 48370629 4204.0 + 0 ENSG00000235621.8 lincRNA LINC00494 2 OTTHUMG00000032682.1 +40386 chr20 HAVANA gene 48383323 48384895 404.0 - 0 ENSG00000236874.1 lincRNA AL137078.1 2 OTTHUMG00000032680.1 +40387 chr20 HAVANA gene 48407367 48410716 318.0 + 0 ENSG00000274261.1 lincRNA AL137078.2 2 OTTHUMG00000186937.1 +40388 chr20 HAVANA gene 48471308 48472414 642.0 + 0 ENSG00000281365.1 lincRNA AL049541.1 2 OTTHUMG00000189697.1 +40389 chr20 HAVANA gene 48476999 48477553 555.0 + 0 ENSG00000281460.1 lincRNA AL049541.2 2 OTTHUMG00000189698.1 +40390 chr20 ENSEMBL gene 48494234 48494309 76.0 - 0 ENSG00000238452.1 snRNA RNU7-144P 3 +40391 chr20 HAVANA gene 48624252 48827883 7393.0 - 0 ENSG00000124126.13 protein_coding PREX1 2 OTTHUMG00000032685.4 overlapping_locus +40392 chr20 HAVANA gene 48821688 48849458 366.0 - 0 ENSG00000278231.1 lincRNA AL133342.1 2 OTTHUMG00000186941.1 overlapping_locus +40393 chr20 HAVANA gene 48921890 49036693 8945.0 + 0 ENSG00000124198.8 protein_coding ARFGEF2 2 OTTHUMG00000032687.1 +40394 chr20 HAVANA gene 49038357 49038602 246.0 - 0 ENSG00000230758.1 processed_pseudogene SNAP23P1 1 OTTHUMG00000032689.1 pseudo_consens +40395 chr20 HAVANA gene 49040463 49046044 556.0 - 0 ENSG00000227431.5 antisense CSE1L-AS1 1 OTTHUMG00000032688.1 +40396 chr20 HAVANA gene 49046246 49096960 3800.0 + 0 ENSG00000124207.16 protein_coding CSE1L 2 OTTHUMG00000033046.3 +40397 chr20 HAVANA gene 49134480 49135012 533.0 + 0 ENSG00000226284.1 processed_pseudogene ARPC3P1 1 OTTHUMG00000032694.3 pseudo_consens +40398 chr20 HAVANA gene 49113339 49188367 4094.0 - 0 ENSG00000124214.19 protein_coding STAU1 2 OTTHUMG00000032691.5 +40399 chr20 HAVANA gene 49219295 49244077 5457.0 + 0 ENSG00000124228.14 protein_coding DDX27 2 OTTHUMG00000033072.5 +40400 chr20 HAVANA gene 49237946 49278426 9340.0 - 0 ENSG00000124201.14 protein_coding ZNFX1 2 OTTHUMG00000032696.6 +40401 chr20 ENSEMBL gene 49278427 49278624 198.0 + 0 ENSG00000277830.1 misc_RNA RF02215 3 +40402 chr20 ENSEMBL gene 49278940 49279028 89.0 + 0 ENSG00000209042.1 snoRNA SNORD12C 3 +40403 chr20 ENSEMBL gene 49279116 49279208 93.0 + 0 ENSG00000274760.1 misc_RNA RF02216 3 +40404 chr20 ENSEMBL gene 49280319 49280409 91.0 + 0 ENSG00000222365.1 snoRNA SNORD12B 3 +40405 chr20 ENSEMBL gene 49280485 49280571 87.0 + 0 ENSG00000277967.1 misc_RNA RF02217 3 +40406 chr20 ENSEMBL gene 49280683 49280772 90.0 + 0 ENSG00000212304.1 snoRNA SNORD12 3 +40407 chr20 HAVANA gene 49278178 49295738 2243.0 + 0 ENSG00000177410.12 antisense ZFAS1 2 OTTHUMG00000032698.5 ncRNA_host +40408 chr20 HAVANA gene 49318337 49441654 3951.0 + 0 ENSG00000283529.1 transcribed_unprocessed_pseudogene AL035685.1 2 OTTHUMG00000191701.1 +40409 chr20 HAVANA gene 49293394 49484297 17733.0 - 0 ENSG00000158445.9 protein_coding KCNB1 2 OTTHUMG00000033051.7 +40410 chr20 HAVANA gene 49503874 49568146 5579.0 - 0 ENSG00000124212.5 protein_coding PTGIS 2 OTTHUMG00000033077.4 +40411 chr20 HAVANA gene 49632945 49713878 4722.0 - 0 ENSG00000158470.5 protein_coding B4GALT5 2 OTTHUMG00000033086.3 +40412 chr20 ENSEMBL gene 49721949 49722247 299.0 + 0 ENSG00000276031.1 misc_RNA RN7SL197P 3 +40413 chr20 HAVANA gene 49729591 49729842 252.0 - 0 ENSG00000231878.1 processed_pseudogene SNRPFP1 1 OTTHUMG00000032701.1 pseudo_consens +40414 chr20 ENSEMBL gene 49794811 49794914 104.0 + 0 ENSG00000252540.1 snRNA RNU6-919P 3 +40415 chr20 HAVANA gene 49829125 49831085 1653.0 + 0 ENSG00000237788.1 processed_pseudogene AL162615.1 1 OTTHUMG00000032703.1 pseudo_consens,overlapping_locus +40416 chr20 HAVANA gene 49812713 49892242 6946.0 + 0 ENSG00000197818.11 protein_coding SLC9A8 2 OTTHUMG00000032710.4 overlapping_locus +40417 chr20 HAVANA gene 49903391 49915508 4270.0 - 0 ENSG00000158480.10 protein_coding SPATA2 2 OTTHUMG00000032704.1 +40418 chr20 ENSEMBL gene 49920597 49920694 98.0 - 0 ENSG00000199490.1 misc_RNA RF00019 3 +40419 chr20 ENSEMBL gene 49932795 49933078 284.0 + 0 ENSG00000269103.2 misc_RNA RF00017 3 +40420 chr20 HAVANA gene 49936336 49953892 4344.0 + 0 ENSG00000124226.10 protein_coding RNF114 2 OTTHUMG00000032709.3 +40421 chr20 HAVANA gene 49956745 49958032 1288.0 + 0 ENSG00000229222.1 processed_pseudogene KRT18P4 1 OTTHUMG00000032705.1 pseudo_consens +40422 chr20 ENSEMBL gene 49972106 49972212 107.0 + 0 ENSG00000206710.1 snRNA RNU6-147P 3 +40423 chr20 HAVANA gene 49982999 49988886 1686.0 + 0 ENSG00000124216.3 protein_coding SNAI1 2 OTTHUMG00000033048.1 +40424 chr20 HAVANA gene 50040716 50041504 462.0 - 0 ENSG00000231265.1 lincRNA TRERNA1 1 OTTHUMG00000032711.1 +40425 chr20 HAVANA gene 50081124 50115959 4818.0 - 0 ENSG00000244687.11 protein_coding UBE2V1 2 OTTHUMG00000152626.6 overlapping_locus +40426 chr20 HAVANA gene 50081124 50153637 2757.0 - 0 ENSG00000124208.16 protein_coding TMEM189-UBE2V1 2 OTTHUMG00000033085.12 overlapping_locus +40427 chr20 HAVANA gene 50118254 50153734 7931.0 - 0 ENSG00000240849.10 protein_coding TMEM189 2 OTTHUMG00000152625.4 overlapping_locus +40428 chr20 HAVANA gene 50162765 50166102 1064.0 - 0 ENSG00000237595.3 lincRNA AL161937.2 1 OTTHUMG00000032717.4 +40429 chr20 HAVANA gene 50166362 50171742 616.0 + 0 ENSG00000234698.1 lincRNA AL161937.1 1 OTTHUMG00000032716.1 +40430 chr20 HAVANA gene 50172550 50176671 894.0 + 0 ENSG00000231742.5 lincRNA LINC01273 1 OTTHUMG00000032718.3 +40431 chr20 HAVANA gene 50184598 50191498 2648.0 - 0 ENSG00000277449.1 antisense CEBPB-AS1 2 OTTHUMG00000186944.1 +40432 chr20 HAVANA gene 50190734 50192689 1956.0 + 0 ENSG00000172216.5 protein_coding CEBPB 2 OTTHUMG00000032715.1 +40433 chr20 HAVANA gene 50267486 50279795 2451.0 + 0 ENSG00000224397.5 lincRNA SMIM25 2 OTTHUMG00000032721.2 +40434 chr20 HAVANA gene 50292720 50314922 3014.0 + 0 ENSG00000203999.8 lincRNA LINC01270 2 OTTHUMG00000032719.1 +40435 chr20 HAVANA gene 50310711 50321342 2250.0 - 0 ENSG00000233077.1 lincRNA LINC01271 2 OTTHUMG00000032720.1 +40436 chr20 ENSEMBL gene 50429190 50429483 294.0 - 0 ENSG00000244376.3 misc_RNA RN7SL636P 3 +40437 chr20 HAVANA gene 50479767 50479991 225.0 + 0 ENSG00000231715.1 processed_pseudogene COX6CP2 1 OTTHUMG00000032722.1 pseudo_consens +40438 chr20 ENSEMBL gene 50557682 50557998 317.0 - 0 ENSG00000239742.3 misc_RNA RN7SL672P 3 +40439 chr20 ENSEMBL gene 50563009 50563110 102.0 + 0 ENSG00000201501.1 misc_RNA RF00019 3 +40440 chr20 HAVANA gene 50570975 50578041 4587.0 - 0 ENSG00000232043.1 antisense AL133230.1 2 OTTHUMG00000133695.1 +40441 chr20 HAVANA gene 50510321 50585241 4041.0 + 0 ENSG00000196396.9 protein_coding PTPN1 2 OTTHUMG00000032729.3 ncRNA_host +40442 chr20 ENSEMBL gene 50585786 50585879 94.0 + 0 ENSG00000208018.1 miRNA MIR645 3 +40443 chr20 ENSEMBL gene 50614636 50614785 150.0 - 0 ENSG00000221091.1 miRNA MIR1302-5 3 +40444 chr20 HAVANA gene 50620763 50621077 315.0 + 0 ENSG00000231302.1 processed_pseudogene RPL36P2 1 OTTHUMG00000032728.1 pseudo_consens +40445 chr20 HAVANA gene 50645471 50662275 964.0 + 0 ENSG00000234693.1 antisense AL353653.1 2 OTTHUMG00000032727.2 +40446 chr20 HAVANA gene 50586108 50691528 6009.0 - 0 ENSG00000042062.11 protein_coding RIPOR3 2 OTTHUMG00000032724.2 ncRNA_host +40447 chr20 HAVANA gene 50731544 50756795 4726.0 + 0 ENSG00000124171.8 protein_coding PARD6B 1 OTTHUMG00000032732.2 +40448 chr20 HAVANA gene 50840615 50840749 135.0 - 0 ENSG00000230043.1 processed_pseudogene TMSB4XP6 2 OTTHUMG00000074021.1 +40449 chr20 HAVANA gene 50794894 50882676 7583.0 + 0 ENSG00000124243.17 protein_coding BCAS4 2 OTTHUMG00000032735.7 +40450 chr20 HAVANA gene 50913731 50914411 681.0 + 0 ENSG00000228663.1 processed_pseudogene PSMD10P1 1 OTTHUMG00000032736.1 pseudo_consens +40451 chr20 HAVANA gene 50888916 50931421 8423.0 - 0 ENSG00000101126.16 protein_coding ADNP 2 OTTHUMG00000032737.26 +40452 chr20 HAVANA gene 50930984 50945134 927.0 + 0 ENSG00000259456.3 antisense ADNP-AS1 2 OTTHUMG00000172534.3 +40453 chr20 HAVANA gene 50934867 50958555 1207.0 - 0 ENSG00000000419.12 protein_coding DPM1 2 OTTHUMG00000032742.2 +40454 chr20 HAVANA gene 50958826 50963931 5106.0 + 0 ENSG00000124217.4 protein_coding MOCS3 2 OTTHUMG00000032741.4 +40455 chr20 HAVANA gene 50999370 51010019 802.0 + 0 ENSG00000232358.1 antisense AL050404.1 1 OTTHUMG00000134277.2 +40456 chr20 HAVANA gene 51003656 51023129 5437.0 - 0 ENSG00000026559.13 protein_coding KCNG1 2 OTTHUMG00000032745.8 +40457 chr20 HAVANA gene 51098138 51098845 708.0 + 0 ENSG00000279835.1 TEC AL121785.1 2 OTTHUMG00000175632.1 +40458 chr20 HAVANA gene 51130788 51131667 880.0 - 0 ENSG00000228820.2 processed_pseudogene RPSAP1 1 OTTHUMG00000032746.1 pseudo_consens +40459 chr20 ENSEMBL gene 51452905 51452977 73.0 - 0 ENSG00000266761.1 miRNA MIR3194 3 +40460 chr20 HAVANA gene 51386957 51562831 8286.0 - 0 ENSG00000101096.19 protein_coding NFATC2 2 OTTHUMG00000032747.3 ncRNA_host +40461 chr20 HAVANA gene 51734533 51735067 459.0 + 0 ENSG00000215444.2 processed_pseudogene AL138807.1 1 OTTHUMG00000032749.1 pseudo_consens +40462 chr20 HAVANA gene 51596514 51768634 8317.0 - 0 ENSG00000054793.13 protein_coding ATP9A 1 OTTHUMG00000032751.3 +40463 chr20 HAVANA gene 51782331 51802520 5772.0 - 0 ENSG00000101115.12 protein_coding SALL4 1 OTTHUMG00000032752.5 +40464 chr20 HAVANA gene 51831797 51862912 2326.0 - 0 ENSG00000227964.1 lincRNA LINC01429 2 OTTHUMG00000134283.1 +40465 chr20 ENSEMBL gene 51902291 51902395 105.0 + 0 ENSG00000252467.1 snRNA RNU6-347P 3 +40466 chr20 ENSEMBL gene 51904969 51905030 62.0 + 0 ENSG00000252654.1 snRNA RNU7-6P 3 +40467 chr20 HAVANA gene 52110344 52111049 706.0 - 0 ENSG00000233347.1 processed_pseudogene ERP29P1 1 OTTHUMG00000032754.1 pseudo_consens,overlapping_locus +40468 chr20 HAVANA gene 52051663 52204308 6997.0 - 0 ENSG00000020256.19 protein_coding ZFP64 2 OTTHUMG00000032756.3 overlapping_locus +40469 chr20 HAVANA gene 52451464 52455619 431.0 - 0 ENSG00000225785.1 lincRNA AL109610.1 1 OTTHUMG00000032757.2 +40470 chr20 ENSEMBL gene 52482801 52482991 191.0 - 0 ENSG00000275958.1 misc_RNA RF02271 3 +40471 chr20 HAVANA gene 52487922 52500591 573.0 - 0 ENSG00000232465.1 lincRNA AL049765.1 2 OTTHUMG00000134296.1 +40472 chr20 HAVANA gene 52511252 52511568 317.0 + 0 ENSG00000234821.1 processed_pseudogene MRPS33P4 1 OTTHUMG00000032758.1 pseudo_consens,overlapping_locus +40473 chr20 HAVANA gene 52210645 52650431 4883.0 + 0 ENSG00000234948.1 lincRNA LINC01524 2 OTTHUMG00000134297.2 overlapping_locus +40474 chr20 HAVANA gene 52671917 52690929 1173.0 + 0 ENSG00000232294.5 lincRNA AL031674.1 2 OTTHUMG00000032760.2 +40475 chr20 HAVANA gene 52858338 52862855 459.0 - 0 ENSG00000232286.1 lincRNA AL121902.1 2 OTTHUMG00000033074.2 +40476 chr20 HAVANA gene 52890162 52890386 225.0 + 0 ENSG00000230636.1 processed_pseudogene RPL36P1 2 OTTHUMG00000032761.1 +40477 chr20 ENSEMBL gene 53097652 53097984 333.0 + 0 ENSG00000199218.1 misc_RNA RN7SKP184 3 +40478 chr20 HAVANA gene 53168643 53179550 1620.0 - 0 ENSG00000223492.1 antisense AL391097.1 2 OTTHUMG00000134301.1 +40479 chr20 HAVANA gene 53196229 53208705 485.0 - 0 ENSG00000227705.1 antisense AL391097.2 2 OTTHUMG00000134300.1 +40480 chr20 HAVANA gene 53397661 53412910 3280.0 - 0 ENSG00000231703.2 antisense AL354993.1 2 OTTHUMG00000033066.2 overlapping_locus +40481 chr20 HAVANA gene 53421199 53421656 458.0 + 0 ENSG00000224530.1 processed_pseudogene PPIAP10 1 OTTHUMG00000032762.1 pseudo_consens,overlapping_locus +40482 chr20 HAVANA gene 53255979 53487274 724.0 - 0 ENSG00000271774.1 antisense AL109930.1 2 OTTHUMG00000185603.1 overlapping_locus +40483 chr20 HAVANA gene 52972407 53495330 12581.0 + 0 ENSG00000182463.15 protein_coding TSHZ2 2 OTTHUMG00000033058.8 ncRNA_host,overlapping_locus +40484 chr20 HAVANA gene 53453058 53504314 542.0 - 0 ENSG00000259723.1 antisense AL354993.2 2 OTTHUMG00000172541.1 overlapping_locus +40485 chr20 ENSEMBL gene 53544615 53544725 111.0 + 0 ENSG00000206959.1 misc_RNA RF00019 3 +40486 chr20 HAVANA gene 53552770 53575863 2502.0 + 0 ENSG00000197670.6 antisense AL157838.1 2 OTTHUMG00000032765.3 +40487 chr20 HAVANA gene 53567065 53609907 6181.0 - 0 ENSG00000171940.13 protein_coding ZNF217 1 OTTHUMG00000032764.5 +40488 chr20 HAVANA gene 53608354 53634590 381.0 + 0 ENSG00000235415.1 lincRNA AC005808.1 1 OTTHUMG00000032767.2 +40489 chr20 ENSEMBL gene 53668697 53668758 62.0 - 0 ENSG00000238468.1 snRNA RNU7-14P 3 +40490 chr20 HAVANA gene 53799823 53801318 345.0 - 0 ENSG00000225563.1 lincRNA AC006076.1 1 OTTHUMG00000032768.1 +40491 chr20 HAVANA gene 53875252 53875557 306.0 - 0 ENSG00000241721.1 processed_pseudogene SUMO1P1 1 OTTHUMG00000032770.2 pseudo_consens +40492 chr20 HAVANA gene 53940160 53942508 884.0 + 0 ENSG00000236352.1 antisense AC005220.1 1 OTTHUMG00000032769.1 +40493 chr20 ENSEMBL gene 54068408 54068485 78.0 - 0 ENSG00000265595.1 miRNA MIR4756 3 +40494 chr20 HAVANA gene 53936777 54070594 8186.0 - 0 ENSG00000064787.13 protein_coding BCAS1 2 OTTHUMG00000032772.2 ncRNA_host +40495 chr20 HAVANA gene 54153449 54173973 3972.0 - 0 ENSG00000019186.9 protein_coding CYP24A1 1 OTTHUMG00000032773.2 +40496 chr20 HAVANA gene 54207847 54228052 1975.0 + 0 ENSG00000101132.9 protein_coding PFDN4 2 OTTHUMG00000032775.4 +40497 chr20 HAVANA gene 54475597 54651171 2604.0 + 0 ENSG00000101134.11 protein_coding DOK5 2 OTTHUMG00000032778.2 +40498 chr20 ENSEMBL gene 54859688 54859812 125.0 - 0 ENSG00000252089.1 snRNA RNU4ATAC7P 3 +40499 chr20 HAVANA gene 55074644 55075140 497.0 + 0 ENSG00000185834.10 processed_pseudogene RPL12P4 1 OTTHUMG00000032779.1 pseudo_consens +40500 chr20 HAVANA gene 55420336 55427197 2290.0 - 0 ENSG00000224008.1 lincRNA LINC01441 2 OTTHUMG00000134311.1 +40501 chr20 HAVANA gene 55408898 55482777 3782.0 + 0 ENSG00000235166.7 lincRNA LINC01440 1 OTTHUMG00000032780.6 +40502 chr20 HAVANA gene 55504906 55505215 310.0 - 0 ENSG00000275923.1 lincRNA AL160413.1 2 OTTHUMG00000188363.1 +40503 chr20 HAVANA gene 55997440 56005472 3024.0 - 0 ENSG00000054803.3 protein_coding CBLN4 2 OTTHUMG00000032782.2 +40504 chr20 ENSEMBL gene 56205052 56205173 122.0 - 0 ENSG00000222118.1 rRNA_pseudogene RNA5SP487 3 +40505 chr20 HAVANA gene 56248732 56249815 1084.0 + 0 ENSG00000124089.4 protein_coding MC3R 2 OTTHUMG00000032785.3 +40506 chr20 HAVANA gene 56267872 56269231 1095.0 + 0 ENSG00000235594.1 processed_pseudogene AL139824.2 2 OTTHUMG00000032783.2 +40507 chr20 HAVANA gene 56295967 56299160 453.0 - 0 ENSG00000230843.1 lincRNA AL139824.1 2 OTTHUMG00000032784.1 +40508 chr20 HAVANA gene 56358915 56368663 3577.0 + 0 ENSG00000124098.9 protein_coding FAM210B 2 OTTHUMG00000032793.2 +40509 chr20 HAVANA gene 56369389 56392337 2928.0 - 0 ENSG00000087586.17 protein_coding AURKA 2 OTTHUMG00000032796.7 +40510 chr20 HAVANA gene 56392371 56406369 4800.0 + 0 ENSG00000101138.11 protein_coding CSTF1 2 OTTHUMG00000032791.8 +40511 chr20 HAVANA gene 56459428 56459583 156.0 - 0 ENSG00000228601.1 processed_pseudogene RPL39P 2 OTTHUMG00000032789.1 +40512 chr20 HAVANA gene 56412112 56460387 5069.0 + 0 ENSG00000087589.16 protein_coding CASS4 2 OTTHUMG00000032788.3 +40513 chr20 HAVANA gene 56468585 56519449 4063.0 + 0 ENSG00000022277.12 protein_coding RTF2 1 OTTHUMG00000032801.3 overlapping_locus +40514 chr20 HAVANA gene 56522252 56523499 1248.0 + 0 ENSG00000280387.1 TEC AL109806.1 2 OTTHUMG00000186869.1 overlapping_locus +40515 chr20 HAVANA gene 56491492 56525925 2064.0 - 0 ENSG00000124091.9 protein_coding GCNT7 1 OTTHUMG00000032798.2 +40516 chr20 HAVANA gene 56517187 56526142 1137.0 + 0 ENSG00000124103.8 protein_coding FAM209A 2 OTTHUMG00000032799.2 overlapping_locus +40517 chr20 HAVANA gene 56533246 56536520 694.0 + 0 ENSG00000213714.1 protein_coding FAM209B 2 OTTHUMG00000032800.1 +40518 chr20 HAVANA gene 56577563 56598621 996.0 + 0 ENSG00000225657.2 lincRNA LINC01716 1 OTTHUMG00000032803.2 fragmented_locus +40519 chr20 HAVANA gene 56601701 56602113 413.0 + 0 ENSG00000214541.3 processed_pseudogene RPS4XP3 1 OTTHUMG00000032802.1 pseudo_consens +40520 chr20 HAVANA gene 56629302 56639283 3005.0 + 0 ENSG00000087510.6 protein_coding TFAP2C 2 OTTHUMG00000032805.3 +40521 chr20 ENSEMBL gene 56667430 56667531 102.0 + 0 ENSG00000252091.1 snRNA RNU6-1146P 3 +40522 chr20 ENSEMBL gene 56688401 56688695 295.0 + 0 ENSG00000241821.3 misc_RNA RN7SL170P 3 +40523 chr20 HAVANA gene 56700837 56701514 327.0 - 0 ENSG00000237000.1 processed_pseudogene PTMAP6 2 OTTHUMG00000032804.2 +40524 chr20 HAVANA gene 56730397 56731460 483.0 + 0 ENSG00000231604.2 lincRNA AL133232.1 2 OTTHUMG00000032807.2 +40525 chr20 ENSEMBL gene 56785981 56786087 107.0 - 0 ENSG00000207158.1 snRNA RNU6-929P 3 +40526 chr20 HAVANA gene 57105741 57107128 377.0 + 0 ENSG00000231078.1 lincRNA AL157414.2 1 OTTHUMG00000032809.1 +40527 chr20 HAVANA gene 57114915 57122092 770.0 + 0 ENSG00000203266.2 lincRNA AL157414.1 1 OTTHUMG00000032808.3 +40528 chr20 HAVANA gene 57161822 57163775 1954.0 + 0 ENSG00000280220.1 TEC AL157414.3 2 OTTHUMG00000175577.1 +40529 chr20 HAVANA gene 57214872 57215866 436.0 + 0 ENSG00000235032.1 antisense BMP7-AS1 1 OTTHUMG00000032810.1 +40530 chr20 HAVANA gene 57168748 57266629 5418.0 - 0 ENSG00000101144.12 protein_coding BMP7 1 OTTHUMG00000032812.4 +40531 chr20 HAVANA gene 57266797 57282998 1293.0 + 0 ENSG00000226308.1 lincRNA AL122058.1 2 OTTHUMG00000032811.2 +40532 chr20 ENSEMBL gene 57311854 57311958 105.0 + 0 ENSG00000252064.1 misc_RNA RF00019 3 +40533 chr20 ENSEMBL gene 57321502 57321591 90.0 - 0 ENSG00000266666.1 miRNA MIR4325 3 +40534 chr20 HAVANA gene 57328546 57328696 151.0 + 0 ENSG00000231005.1 processed_pseudogene RPL39P39 1 OTTHUMG00000032815.1 pseudo_consens +40535 chr20 HAVANA gene 57329759 57343994 1867.0 + 0 ENSG00000054796.12 protein_coding SPO11 1 OTTHUMG00000032817.7 +40536 chr20 HAVANA gene 57357426 57358369 944.0 - 0 ENSG00000228995.1 processed_pseudogene MTND1P9 2 OTTHUMG00000032816.1 +40537 chr20 HAVANA gene 57358442 57359980 1539.0 - 0 ENSG00000256222.2 protein_coding MTRNR2L3 2 OTTHUMG00000184962.2 +40538 chr20 HAVANA gene 57351010 57379211 5855.0 + 0 ENSG00000101146.12 protein_coding RAE1 2 OTTHUMG00000032819.4 +40539 chr20 HAVANA gene 57384160 57393062 1540.0 - 0 ENSG00000218018.2 antisense AL109955.1 1 OTTHUMG00000134335.1 +40540 chr20 HAVANA gene 57391407 57409333 2686.0 + 0 ENSG00000132819.16 protein_coding RBM38 2 OTTHUMG00000032820.6 +40541 chr20 HAVANA gene 57488392 57489027 636.0 - 0 ENSG00000124097.7 processed_pseudogene HMGB1P1 1 OTTHUMG00000032823.3 pseudo_consens +40542 chr20 HAVANA gene 57495966 57525652 8928.0 - 0 ENSG00000124092.12 protein_coding CTCFL 1 OTTHUMG00000032829.7 +40543 chr20 HAVANA gene 57561080 57568112 6819.0 + 0 ENSG00000124253.10 protein_coding PCK1 2 OTTHUMG00000032825.3 +40544 chr20 HAVANA gene 57599695 57601200 823.0 - 0 ENSG00000227297.1 lincRNA AL035541.1 2 OTTHUMG00000032826.2 +40545 chr20 HAVANA gene 57603846 57620576 5405.0 - 0 ENSG00000124256.14 protein_coding ZBP1 2 OTTHUMG00000032824.4 +40546 chr20 HAVANA gene 57648392 57711536 5619.0 - 0 ENSG00000124225.15 protein_coding PMEPA1 1 OTTHUMG00000032831.3 +40547 chr20 HAVANA gene 57710183 57712780 2598.0 + 0 ENSG00000278709.1 antisense NKILA 2 OTTHUMG00000186958.1 +40548 chr20 ENSEMBL gene 57895394 57895444 51.0 + 0 ENSG00000263453.1 miRNA MIR4532 3 +40549 chr20 HAVANA gene 57957126 57959660 1854.0 - 0 ENSG00000203971.1 lincRNA AL354984.1 2 OTTHUMG00000137362.2 +40550 chr20 HAVANA gene 58003904 58004648 628.0 + 0 ENSG00000275852.1 lincRNA LINC01742 2 OTTHUMG00000186963.1 +40551 chr20 HAVANA gene 58069054 58072070 1024.0 - 0 ENSG00000225708.6 lincRNA AL354984.2 2 OTTHUMG00000032833.3 +40552 chr20 HAVANA gene 58097267 58097591 325.0 + 0 ENSG00000270411.1 processed_pseudogene AL354984.3 1 OTTHUMG00000184888.1 pseudo_consens +40553 chr20 HAVANA gene 58150904 58161150 803.0 + 0 ENSG00000124237.5 protein_coding C20orf85 2 OTTHUMG00000032836.2 +40554 chr20 HAVANA gene 58218495 58228653 1038.0 - 0 ENSG00000124227.5 protein_coding ANKRD60 2 OTTHUMG00000032837.6 +40555 chr20 HAVANA gene 58228940 58309439 9251.0 - 0 ENSG00000124224.16 transcribed_unprocessed_pseudogene PPP4R1L 1 OTTHUMG00000032838.12 +40556 chr20 HAVANA gene 58309696 58367507 9285.0 + 0 ENSG00000124209.3 protein_coding RAB22A 2 OTTHUMG00000032844.2 +40557 chr20 HAVANA gene 58389122 58451101 10585.0 + 0 ENSG00000124164.15 protein_coding VAPB 2 OTTHUMG00000032840.3 +40558 chr20 HAVANA gene 58459101 58515131 3942.0 - 0 ENSG00000198768.10 protein_coding APCDD1L 2 OTTHUMG00000032845.4 +40559 chr20 HAVANA gene 58594417 58603973 507.0 + 0 ENSG00000254620.1 lincRNA AL050327.1 2 OTTHUMG00000167401.1 overlapping_locus +40560 chr20 HAVANA gene 58515379 58619888 4940.0 + 0 ENSG00000231290.5 processed_transcript APCDD1L-DT 2 OTTHUMG00000032847.2 overlapping_locus +40561 chr20 HAVANA gene 58634772 58635738 967.0 + 0 ENSG00000268941.2 lincRNA LINC01711 2 OTTHUMG00000187341.1 +40562 chr20 HAVANA gene 58651253 58679526 5099.0 + 0 ENSG00000124222.22 protein_coding STX16 2 OTTHUMG00000033084.8 overlapping_locus +40563 chr20 HAVANA gene 58710795 58711633 577.0 + 0 ENSG00000254419.1 sense_intronic AL139349.1 1 OTTHUMG00000167377.1 overlapping_locus +40564 chr20 HAVANA gene 58651434 58715410 3859.0 + 0 ENSG00000254995.4 protein_coding STX16-NPEPL1 2 OTTHUMG00000167390.1 overlapping_locus +40565 chr20 HAVANA gene 58689131 58719238 7641.0 + 0 ENSG00000215440.11 protein_coding NPEPL1 2 OTTHUMG00000033060.7 overlapping_locus +40566 chr20 HAVANA gene 58754351 58756838 1619.0 + 0 ENSG00000270279.1 lincRNA AL132655.3 2 OTTHUMG00000185294.1 +40567 chr20 HAVANA gene 58740532 58783821 2180.0 - 0 ENSG00000237121.1 unprocessed_pseudogene PIEZO1P2 2 OTTHUMG00000032850.1 +40568 chr20 ENSEMBL gene 58817615 58817694 80.0 - 0 ENSG00000284040.1 miRNA MIR296 3 +40569 chr20 HAVANA gene 58817132 58817725 594.0 - 0 ENSG00000268649.5 lincRNA AL132655.2 2 OTTHUMG00000183175.1 ncRNA_host +40570 chr20 ENSEMBL gene 58818226 58818313 88.0 - 0 ENSG00000216031.1 miRNA MIR298 3 +40571 chr20 HAVANA gene 58833809 58836529 1153.0 - 0 ENSG00000268333.1 lincRNA AL132655.1 2 OTTHUMG00000183176.1 overlapping_locus +40572 chr20 ENSEMBL gene 58842030 58842132 103.0 + 0 ENSG00000276859.1 misc_RNA RF02127 3 +40573 chr20 ENSEMBL gene 58842433 58842546 114.0 + 0 ENSG00000276722.1 misc_RNA RF02128 3 +40574 chr20 ENSEMBL gene 58850530 58850641 112.0 + 0 ENSG00000274491.1 misc_RNA RF02130 3 +40575 chr20 ENSEMBL gene 58850783 58850903 121.0 + 0 ENSG00000275069.1 misc_RNA RF02131 3 +40576 chr20 HAVANA gene 58818919 58850903 3657.0 - 0 ENSG00000235590.7 antisense GNAS-AS1 2 OTTHUMG00000060481.5 overlapping_locus +40577 chr20 HAVANA gene 58876592 58876981 390.0 - 0 ENSG00000270951.1 antisense AL121917.2 2 OTTHUMG00000185295.1 overlapping_locus +40578 chr20 HAVANA gene 58863528 58888809 1521.0 - 0 ENSG00000225806.7 antisense AL121917.1 1 OTTHUMG00000137369.4 overlapping_locus +40579 chr20 HAVANA gene 58839718 58911192 13320.0 + 0 ENSG00000087460.24 protein_coding GNAS 2 OTTHUMG00000033069.21 ncRNA_host +40580 chr20 HAVANA gene 58948089 58948267 179.0 - 0 ENSG00000284985.1 unprocessed_pseudogene AL109840.1 2 OTTHUMG00000192460.1 +40581 chr20 HAVANA gene 58916000 58981169 1925.0 - 0 ENSG00000285091.1 bidirectional_promoter_lncRNA AL109840.2 2 OTTHUMG00000192418.1 +40582 chr20 HAVANA gene 58981208 58995133 6298.0 + 0 ENSG00000101158.13 protein_coding NELFCD 2 OTTHUMG00000032861.5 +40583 chr20 HAVANA gene 58995185 59007247 2038.0 - 0 ENSG00000101160.13 protein_coding CTSZ 2 OTTHUMG00000032858.2 +40584 chr20 HAVANA gene 59019254 59026654 3496.0 + 0 ENSG00000101162.3 protein_coding TUBB1 2 OTTHUMG00000032860.1 +40585 chr20 HAVANA gene 59025467 59032382 5126.0 - 0 ENSG00000124172.9 protein_coding ATP5F1E 2 OTTHUMG00000032854.3 +40586 chr20 HAVANA gene 59033145 59042909 2977.0 - 0 ENSG00000101166.15 protein_coding PRELID3B 2 OTTHUMG00000032856.3 +40587 chr20 HAVANA gene 59113224 59113631 408.0 + 0 ENSG00000232925.2 processed_pseudogene MRPS16P2 1 OTTHUMG00000032863.1 pseudo_consens +40588 chr20 HAVANA gene 59123381 59259113 11605.0 + 0 ENSG00000124203.6 protein_coding ZNF831 1 OTTHUMG00000032864.5 +40589 chr20 HAVANA gene 59300427 59325992 2675.0 + 0 ENSG00000124205.16 protein_coding EDN3 2 OTTHUMG00000032867.3 +40590 chr20 HAVANA gene 59352195 59357774 593.0 - 0 ENSG00000225129.1 lincRNA AL035250.1 2 OTTHUMG00000137387.1 +40591 chr20 HAVANA gene 59360927 59364773 620.0 - 0 ENSG00000230352.1 lincRNA AL035250.2 1 OTTHUMG00000137385.1 +40592 chr20 HAVANA gene 59460619 59460837 219.0 - 0 ENSG00000233686.3 processed_pseudogene PIEZO1P1 2 OTTHUMG00000032868.2 +40593 chr20 HAVANA gene 59515191 59516039 566.0 + 0 ENSG00000227282.1 lincRNA AL389889.1 1 OTTHUMG00000137386.1 +40594 chr20 HAVANA gene 59626464 59628289 682.0 - 0 ENSG00000238194.1 antisense AL121908.1 1 OTTHUMG00000137388.1 +40595 chr20 HAVANA gene 59577509 59847711 6095.0 + 0 ENSG00000087495.16 protein_coding PHACTR3 2 OTTHUMG00000032869.4 +40596 chr20 ENSEMBL gene 59852667 59852728 62.0 - 0 ENSG00000238777.1 snRNA RNU7-141P 3 +40597 chr20 HAVANA gene 59863563 59933655 6466.0 - 0 ENSG00000196074.12 protein_coding SYCP2 2 OTTHUMG00000032872.4 +40598 chr20 HAVANA gene 59936668 59940297 3630.0 - 0 ENSG00000132825.6 protein_coding PPP1R3D 2 OTTHUMG00000032876.2 +40599 chr20 HAVANA gene 59933764 59948680 5323.0 + 0 ENSG00000196227.10 protein_coding FAM217B 2 OTTHUMG00000032873.3 +40600 chr20 HAVANA gene 59958427 60034011 5748.0 + 0 ENSG00000124215.16 protein_coding CDH26 2 OTTHUMG00000032874.3 +40601 chr20 HAVANA gene 60055925 60072953 2732.0 + 0 ENSG00000176659.8 lincRNA C20orf197 2 OTTHUMG00000032880.2 +40602 chr20 HAVANA gene 60083360 60083872 513.0 - 0 ENSG00000276093.1 lincRNA AL132822.1 2 OTTHUMG00000186966.1 +40603 chr20 ENSEMBL gene 60308474 60308567 94.0 + 0 ENSG00000207802.1 miRNA MIR646 3 +40604 chr20 HAVANA gene 60414396 60414872 477.0 - 0 ENSG00000229690.1 processed_pseudogene MTCO2P1 2 OTTHUMG00000032881.1 +40605 chr20 ENSEMBL gene 60478111 60478181 71.0 + 0 ENSG00000266140.1 miRNA MIR4533 3 +40606 chr20 HAVANA gene 60087840 60527458 5137.0 + 0 ENSG00000228340.5 lincRNA MIR646HG 2 OTTHUMG00000032883.1 ncRNA_host +40607 chr20 ENSEMBL gene 60564562 60564625 64.0 + 0 ENSG00000265617.1 miRNA MIR548AG2 3 +40608 chr20 HAVANA gene 60761874 60767279 459.0 + 0 ENSG00000276627.1 lincRNA AL117372.1 2 OTTHUMG00000186967.2 +40609 chr20 HAVANA gene 60812004 60814211 2208.0 - 0 ENSG00000261035.1 lincRNA AL139348.1 2 OTTHUMG00000175574.1 +40610 chr20 HAVANA gene 61077224 61077816 500.0 - 0 ENSG00000229755.1 lincRNA AL121910.1 2 OTTHUMG00000032885.1 +40611 chr20 HAVANA gene 61079140 61080179 391.0 + 0 ENSG00000229606.1 lincRNA LINC01718 1 OTTHUMG00000032884.1 +40612 chr20 HAVANA gene 61369879 61370855 977.0 + 0 ENSG00000276786.1 lincRNA BX640515.1 2 OTTHUMG00000186968.1 overlapping_locus +40613 chr20 HAVANA gene 61434625 61437547 1021.0 - 0 ENSG00000277270.1 lincRNA AL160412.1 2 OTTHUMG00000186969.1 +40614 chr20 HAVANA gene 61717506 61719748 2000.0 - 0 ENSG00000179253.3 antisense AL162457.1 2 OTTHUMG00000032887.1 +40615 chr20 HAVANA gene 61738219 61755056 1354.0 - 0 ENSG00000225106.1 antisense AL162457.2 1 OTTHUMG00000032886.1 +40616 chr20 HAVANA gene 61252426 61940617 7351.0 + 0 ENSG00000179242.15 protein_coding CDH4 2 OTTHUMG00000032890.4 overlapping_locus +40617 chr20 ENSEMBL gene 61953546 61953662 117.0 - 0 ENSG00000284193.1 miRNA MIR1257 3 +40618 chr20 HAVANA gene 62037429 62037956 528.0 - 0 ENSG00000235018.1 processed_pseudogene AL137077.1 1 OTTHUMG00000032892.1 pseudo_consens,overlapping_locus +40619 chr20 ENSEMBL gene 62064802 62064885 84.0 + 0 ENSG00000265306.1 miRNA MIR3195 3 +40620 chr20 HAVANA gene 61953469 62065810 9808.0 - 0 ENSG00000130699.18 protein_coding TAF4 2 OTTHUMG00000032893.9 ncRNA_host,overlapping_locus +40621 chr20 HAVANA gene 62066830 62068437 1608.0 + 0 ENSG00000283078.1 lincRNA AL137077.2 2 OTTHUMG00000191518.1 +40622 chr20 HAVANA gene 62122461 62135378 3381.0 + 0 ENSG00000149657.19 protein_coding LSM14B 2 OTTHUMG00000032901.7 +40623 chr20 HAVANA gene 62136735 62143440 1750.0 - 0 ENSG00000101182.14 protein_coding PSMA7 2 OTTHUMG00000032895.4 +40624 chr20 HAVANA gene 62143795 62182484 5094.0 + 0 ENSG00000184402.14 protein_coding SS18L1 2 OTTHUMG00000032902.5 +40625 chr20 HAVANA gene 62183029 62203568 5209.0 + 0 ENSG00000101181.17 protein_coding MTG2 2 OTTHUMG00000032897.5 +40626 chr20 HAVANA gene 62214970 62220267 2671.0 - 0 ENSG00000101180.15 protein_coding HRH3 2 OTTHUMG00000032899.1 +40627 chr20 HAVANA gene 62231922 62296213 11735.0 + 0 ENSG00000130703.16 protein_coding OSBPL2 2 OTTHUMG00000032909.15 +40628 chr20 HAVANA gene 62305432 62306325 681.0 - 0 ENSG00000226332.2 antisense AL354836.1 1 OTTHUMG00000032910.1 +40629 chr20 HAVANA gene 62302093 62308862 2142.0 + 0 ENSG00000130706.12 protein_coding ADRM1 2 OTTHUMG00000032904.2 +40630 chr20 ENSEMBL gene 62332487 62332557 71.0 - 0 ENSG00000284074.1 miRNA MIR4758 3 +40631 chr20 HAVANA gene 62352995 62356480 843.0 + 0 ENSG00000228812.7 antisense LAMA5-AS1 1 OTTHUMG00000032911.3 +40632 chr20 HAVANA gene 62307955 62367312 14291.0 - 0 ENSG00000130702.15 protein_coding LAMA5 2 OTTHUMG00000032908.6 ncRNA_host +40633 chr20 HAVANA gene 62386303 62386970 668.0 - 0 ENSG00000273619.1 antisense AL121832.2 2 OTTHUMG00000186988.1 +40634 chr20 HAVANA gene 62387116 62388520 1023.0 + 0 ENSG00000171858.17 protein_coding RPS21 2 OTTHUMG00000032915.2 +40635 chr20 HAVANA gene 62402236 62405935 3700.0 - 0 ENSG00000275437.1 sense_intronic AL121832.3 2 OTTHUMG00000186989.1 overlapping_locus +40636 chr20 HAVANA gene 62388632 62407285 3785.0 - 0 ENSG00000149679.11 protein_coding CABLES2 2 OTTHUMG00000032912.3 overlapping_locus +40637 chr20 HAVANA gene 62410237 62427533 2793.0 - 0 ENSG00000130701.3 protein_coding RBBP8NL 2 OTTHUMG00000032913.1 +40638 chr20 HAVANA gene 62427827 62447621 1386.0 + 0 ENSG00000233017.2 antisense AL121832.1 2 OTTHUMG00000032918.3 +40639 chr20 HAVANA gene 62463497 62475970 2595.0 - 0 ENSG00000130700.6 protein_coding GATA5 2 OTTHUMG00000032919.2 +40640 chr20 HAVANA gene 62477870 62478594 725.0 + 0 ENSG00000272050.1 lincRNA AL499627.2 2 OTTHUMG00000185378.1 +40641 chr20 HAVANA gene 62513909 62516096 2188.0 - 0 ENSG00000260542.1 lincRNA AL499627.1 2 OTTHUMG00000175628.1 +40642 chr20 HAVANA gene 62544343 62551526 3397.0 - 0 ENSG00000174403.15 antisense MIR1-1HG-AS1 2 OTTHUMG00000048002.2 +40643 chr20 ENSEMBL gene 62554306 62554376 71.0 + 0 ENSG00000199017.2 miRNA MIR1-1 3 +40644 chr20 ENSEMBL gene 62564912 62565013 102.0 + 0 ENSG00000284508.1 miRNA MIR133A2 3 +40645 chr20 HAVANA gene 62550453 62570764 1220.0 + 0 ENSG00000174407.13 antisense MIR1-1HG 2 OTTHUMG00000048000.1 ncRNA_host +40646 chr20 HAVANA gene 62572671 62573384 714.0 + 0 ENSG00000226094.1 processed_pseudogene RPL7P3 1 OTTHUMG00000048001.1 pseudo_consens +40647 chr20 HAVANA gene 62575590 62577507 1918.0 + 0 ENSG00000264490.3 lincRNA BX640514.1 2 OTTHUMG00000179711.1 +40648 chr20 HAVANA gene 62596732 62603115 625.0 - 0 ENSG00000273812.1 lincRNA BX640514.2 2 OTTHUMG00000186990.2 +40649 chr20 HAVANA gene 62633681 62635504 499.0 - 0 ENSG00000232121.1 antisense AL450469.2 2 OTTHUMG00000032921.1 +40650 chr20 HAVANA gene 62633772 62635862 461.0 + 0 ENSG00000229882.1 antisense AL450469.1 2 OTTHUMG00000032922.1 +40651 chr20 HAVANA gene 62640719 62643304 1933.0 - 0 ENSG00000167046.4 antisense AL357033.1 2 OTTHUMG00000032926.1 +40652 chr20 HAVANA gene 62648961 62650767 1807.0 - 0 ENSG00000277496.1 antisense AL357033.4 2 OTTHUMG00000186991.1 +40653 chr20 HAVANA gene 62651272 62652186 614.0 - 0 ENSG00000276317.1 antisense AL357033.3 2 OTTHUMG00000186999.1 +40654 chr20 HAVANA gene 62663019 62666724 1534.0 - 0 ENSG00000232803.1 antisense SLCO4A1-AS1 2 OTTHUMG00000032925.1 +40655 chr20 HAVANA gene 62642445 62685785 4051.0 + 0 ENSG00000101187.15 protein_coding SLCO4A1 2 OTTHUMG00000032923.3 +40656 chr20 HAVANA gene 62695024 62700480 332.0 - 0 ENSG00000237687.2 lincRNA LINC00686 2 OTTHUMG00000032927.1 +40657 chr20 HAVANA gene 62732566 62735347 739.0 - 0 ENSG00000223669.1 antisense AL357033.2 2 OTTHUMG00000032924.1 +40658 chr20 HAVANA gene 62708837 62762771 4237.0 + 0 ENSG00000101188.4 protein_coding NTSR1 2 OTTHUMG00000032932.1 +40659 chr20 HAVANA gene 62774128 62775412 540.0 - 0 ENSG00000228705.1 antisense LINC00659 1 OTTHUMG00000032931.1 +40660 chr20 HAVANA gene 62796453 62801738 2781.0 + 0 ENSG00000101189.6 protein_coding MRGBP 2 OTTHUMG00000032940.2 +40661 chr20 HAVANA gene 62800627 62805587 668.0 - 0 ENSG00000229873.1 antisense OGFR-AS1 2 OTTHUMG00000032933.1 +40662 chr20 HAVANA gene 62804835 62814000 4702.0 + 0 ENSG00000060491.16 protein_coding OGFR 2 OTTHUMG00000032937.3 +40663 chr20 HAVANA gene 62816244 62841159 4831.0 + 0 ENSG00000092758.17 protein_coding COL9A3 2 OTTHUMG00000032938.7 +40664 chr20 HAVANA gene 62845664 62845912 249.0 + 0 ENSG00000233838.5 processed_pseudogene DPH3P1 2 OTTHUMG00000032941.2 +40665 chr20 HAVANA gene 62841115 62861763 3436.0 - 0 ENSG00000101190.12 protein_coding TCFL5 2 OTTHUMG00000032939.2 +40666 chr20 HAVANA gene 62872250 62873076 526.0 - 0 ENSG00000236527.1 processed_pseudogene ARF4P2 1 OTTHUMG00000032934.1 pseudo_consens +40667 chr20 HAVANA gene 62928621 62929297 677.0 - 0 ENSG00000273759.1 lincRNA AL117379.1 2 OTTHUMG00000187000.1 overlapping_locus +40668 chr20 HAVANA gene 62877738 62937952 13281.0 - 0 ENSG00000101191.16 protein_coding DIDO1 2 OTTHUMG00000032945.3 overlapping_locus +40669 chr20 HAVANA gene 62938119 62948475 4622.0 + 0 ENSG00000101193.7 protein_coding GID8 2 OTTHUMG00000032949.3 +40670 chr20 HAVANA gene 62952647 62969585 5521.0 + 0 ENSG00000101194.17 protein_coding SLC17A9 2 OTTHUMG00000032951.8 +40671 chr20 HAVANA gene 63005927 63007035 1109.0 - 0 ENSG00000125533.5 protein_coding BHLHE23 2 OTTHUMG00000032948.3 +40672 chr20 HAVANA gene 63034217 63037028 1790.0 - 0 ENSG00000125514.9 lincRNA LINC00029 2 OTTHUMG00000032950.2 +40673 chr20 HAVANA gene 63038011 63053863 1234.0 + 0 ENSG00000237119.1 lincRNA LINC01056 2 OTTHUMG00000032954.1 overlapping_locus +40674 chr20 HAVANA gene 63009383 63085071 3936.0 + 0 ENSG00000272259.5 lincRNA LINC01749 2 OTTHUMG00000185413.1 overlapping_locus +40675 chr20 ENSEMBL gene 63102142 63102259 118.0 + 0 ENSG00000274915.1 misc_RNA RF00635 3 +40676 chr20 HAVANA gene 63095493 63102319 896.0 - 0 ENSG00000231133.6 lincRNA HAR1B 2 OTTHUMG00000140135.3 +40677 chr20 HAVANA gene 63102205 63104386 1882.0 + 0 ENSG00000225978.3 lincRNA HAR1A 2 OTTHUMG00000140136.1 +40678 chr20 HAVANA gene 63127495 63129459 1965.0 - 0 ENSG00000260416.1 lincRNA AL096828.2 2 OTTHUMG00000175621.1 +40679 chr20 ENSEMBL gene 63178500 63178586 87.0 + 0 ENSG00000207598.1 miRNA MIR124-3 3 +40680 chr20 HAVANA gene 63166797 63180903 542.0 - 0 ENSG00000231977.1 lincRNA AL096828.1 1 OTTHUMG00000140137.1 +40681 chr20 HAVANA gene 63195429 63216234 3301.0 - 0 ENSG00000149658.17 protein_coding YTHDF1 1 OTTHUMG00000032955.3 +40682 chr20 HAVANA gene 63218041 63218502 462.0 + 0 ENSG00000273821.1 lincRNA AL096828.3 2 OTTHUMG00000187004.1 +40683 chr20 ENSEMBL gene 63238779 63238842 64.0 + 0 ENSG00000266463.1 miRNA MIR3196 3 +40684 chr20 HAVANA gene 63235883 63240507 1562.0 + 0 ENSG00000101197.12 protein_coding BIRC7 2 OTTHUMG00000032957.2 ncRNA_host +40685 chr20 HAVANA gene 63253978 63261615 7638.0 + 0 ENSG00000275620.1 antisense FLJ16779 2 OTTHUMG00000187005.1 +40686 chr20 HAVANA gene 63240784 63272694 2668.0 - 0 ENSG00000101198.14 protein_coding NKAIN4 1 OTTHUMG00000032959.3 +40687 chr20 ENSEMBL gene 63286808 63286866 59.0 + 0 ENSG00000266104.1 miRNA MIR4326 3 +40688 chr20 HAVANA gene 63272785 63289793 6613.0 + 0 ENSG00000101199.12 protein_coding ARFGAP1 1 OTTHUMG00000032965.7 ncRNA_host +40689 chr20 HAVANA gene 63293186 63334851 10974.0 + 0 ENSG00000101203.16 protein_coding COL20A1 2 OTTHUMG00000032964.18 +40690 chr20 ENSEMBL gene 63337339 63337449 111.0 + 0 ENSG00000222439.1 snRNA RNU6-994P 3 +40691 chr20 HAVANA gene 63359988 63371177 3410.0 + 0 ENSG00000203900.2 antisense AL121827.1 2 OTTHUMG00000032958.2 +40692 chr20 HAVANA gene 63343223 63378401 11049.0 - 0 ENSG00000101204.16 protein_coding CHRNA4 2 OTTHUMG00000033080.7 +40693 chr20 HAVANA gene 63422269 63424555 519.0 + 0 ENSG00000280936.1 antisense AL353658.2 2 OTTHUMG00000189592.1 +40694 chr20 HAVANA gene 63448051 63449329 789.0 + 0 ENSG00000226390.1 antisense AL353658.1 1 OTTHUMG00000032967.1 +40695 chr20 HAVANA gene 63400210 63472677 12775.0 - 0 ENSG00000075043.18 protein_coding KCNQ2 2 OTTHUMG00000033049.15 +40696 chr20 HAVANA gene 63488012 63499322 4910.0 - 0 ENSG00000101210.11 protein_coding EEF1A2 2 OTTHUMG00000033076.2 +40697 chr20 HAVANA gene 63502287 63505111 376.0 + 0 ENSG00000230226.1 antisense AL121829.1 1 OTTHUMG00000032968.1 +40698 chr20 HAVANA gene 63520724 63522206 1094.0 + 0 ENSG00000125534.9 protein_coding PPDPF 2 OTTHUMG00000032978.1 +40699 chr20 HAVANA gene 63528001 63537370 2947.0 - 0 ENSG00000101213.6 protein_coding PTK6 2 OTTHUMG00000033039.2 +40700 chr20 HAVANA gene 63543411 63543738 328.0 + 0 ENSG00000275812.1 antisense AL121829.2 2 OTTHUMG00000187022.1 +40701 chr20 HAVANA gene 63540810 63547504 1516.0 - 0 ENSG00000125508.3 protein_coding SRMS 2 OTTHUMG00000032977.1 +40702 chr20 HAVANA gene 63547891 63556708 3625.0 + 0 ENSG00000125531.6 protein_coding FNDC11 2 OTTHUMG00000032980.4 +40703 chr20 HAVANA gene 63558086 63574239 12066.0 - 0 ENSG00000130589.16 protein_coding HELZ2 2 OTTHUMG00000032969.3 +40704 chr20 HAVANA gene 63587602 63627041 4707.0 - 0 ENSG00000101216.10 protein_coding GMEB2 2 OTTHUMG00000032988.1 +40705 chr20 HAVANA gene 63627227 63628824 801.0 + 0 ENSG00000232442.1 antisense MHENCR 2 OTTHUMG00000032983.1 +40706 chr20 HAVANA gene 63639705 63657682 3032.0 - 0 ENSG00000197457.9 protein_coding STMN3 2 OTTHUMG00000032985.2 +40707 chr20 HAVANA gene 63657810 63696253 5995.0 + 0 ENSG00000258366.8 protein_coding RTEL1 1 OTTHUMG00000032992.9 overlapping_locus +40708 chr20 HAVANA gene 63659300 63698684 8738.0 + 0 ENSG00000026036.22 protein_coding RTEL1-TNFRSF6B 2 OTTHUMG00000170363.3 overlapping_locus +40709 chr20 HAVANA gene 63696651 63698684 1141.0 + 0 ENSG00000243509.5 protein_coding TNFRSF6B 2 OTTHUMG00000143724.2 overlapping_locus +40710 chr20 HAVANA gene 63698642 63708025 7627.0 - 0 ENSG00000101246.19 protein_coding ARFRP1 2 OTTHUMG00000032993.7 +40711 chr20 HAVANA gene 63730072 63730377 306.0 - 0 ENSG00000274501.1 antisense AL121845.4 2 OTTHUMG00000187024.1 +40712 chr20 HAVANA gene 63707465 63736142 3335.0 + 0 ENSG00000197114.11 protein_coding ZGPAT 2 OTTHUMG00000032998.6 overlapping_locus +40713 chr20 HAVANA gene 63708864 63739103 3190.0 + 0 ENSG00000273154.3 protein_coding AL121845.3 2 OTTHUMG00000186489.4 overlapping_locus +40714 chr20 HAVANA gene 63736283 63739103 2550.0 + 0 ENSG00000203896.9 protein_coding LIME1 2 OTTHUMG00000032999.5 overlapping_locus +40715 chr20 HAVANA gene 63738270 63740398 586.0 + 0 ENSG00000273047.1 protein_coding AL121845.2 2 OTTHUMG00000186435.2 overlapping_locus +40716 chr20 HAVANA gene 63739861 63743505 2244.0 + 0 ENSG00000125520.13 protein_coding SLC2A4RG 2 OTTHUMG00000032997.3 overlapping_locus +40717 chr20 HAVANA gene 63744689 63745958 471.0 + 0 ENSG00000229299.2 antisense AL121845.1 2 OTTHUMG00000032989.2 +40718 chr20 HAVANA gene 63808076 63816521 533.0 + 0 ENSG00000231208.4 antisense ZBTB46-AS1 2 OTTHUMG00000032990.1 +40719 chr20 HAVANA gene 63743666 63831244 6084.0 - 0 ENSG00000130584.10 protein_coding ZBTB46 2 OTTHUMG00000033001.3 +40720 chr20 HAVANA gene 63843436 63843915 480.0 - 0 ENSG00000279610.1 TEC C20orf181 2 OTTHUMG00000033002.1 +40721 chr20 HAVANA gene 63861498 63862988 1491.0 + 0 ENSG00000183260.7 protein_coding ABHD16B 2 OTTHUMG00000033010.2 retrogene +40722 chr20 HAVANA gene 63861212 63864293 3082.0 - 0 ENSG00000268858.2 antisense AL118506.1 2 OTTHUMG00000187033.1 +40723 chr20 HAVANA gene 63865228 63891545 4694.0 + 0 ENSG00000101150.17 protein_coding TPD52L2 2 OTTHUMG00000033009.2 +40724 chr20 ENSEMBL gene 63908955 63909119 165.0 + 0 ENSG00000199805.1 snRNA RNU1-134P 3 +40725 chr20 ENSEMBL gene 63919449 63919520 72.0 + 0 ENSG00000283206.1 miRNA MIR941-1 3 +40726 chr20 ENSEMBL gene 63919505 63919576 72.0 + 0 ENSG00000216141.3 miRNA MIR941-2 3 +40727 chr20 ENSEMBL gene 63919561 63919632 72.0 + 0 ENSG00000283513.1 miRNA MIR941-3 3 +40728 chr20 ENSEMBL gene 63919756 63919827 72.0 + 0 ENSG00000216195.3 miRNA MIR941-4 3 +40729 chr20 ENSEMBL gene 63919868 63919939 72.0 + 0 ENSG00000275842.1 miRNA MIR941-5 3 +40730 chr20 HAVANA gene 63895182 63936031 5287.0 + 0 ENSG00000101152.10 protein_coding DNAJC5 2 OTTHUMG00000033007.3 ncRNA_host +40731 chr20 ENSEMBL gene 63941465 63941544 80.0 - 0 ENSG00000284433.1 miRNA MIR1914 3 +40732 chr20 ENSEMBL gene 63942631 63942726 96.0 - 0 ENSG00000207554.1 miRNA MIR647 3 +40733 chr20 HAVANA gene 63939829 63956415 3184.0 - 0 ENSG00000198276.15 protein_coding UCKL1 2 OTTHUMG00000033003.7 ncRNA_host +40734 chr20 HAVANA gene 63953384 63956985 3602.0 + 0 ENSG00000280213.1 antisense UCKL1-AS1 2 OTTHUMG00000187354.1 +40735 chr20 HAVANA gene 63956702 63969865 5919.0 - 0 ENSG00000196700.8 protein_coding ZNF512B 2 OTTHUMG00000033008.1 +40736 chr20 HAVANA gene 63974113 63980008 2453.0 - 0 ENSG00000130590.13 protein_coding SAMD10 2 OTTHUMG00000033011.2 +40737 chr20 HAVANA gene 63981135 64033100 3044.0 + 0 ENSG00000101161.7 protein_coding PRPF6 2 OTTHUMG00000033018.1 +40738 chr20 HAVANA gene 64034344 64039962 5480.0 + 0 ENSG00000196421.8 protein_coding C20orf204 2 OTTHUMG00000033015.3 +40739 chr20 HAVANA gene 64047582 64049641 1864.0 - 0 ENSG00000203883.6 protein_coding SOX18 2 OTTHUMG00000033017.2 +40740 chr20 HAVANA gene 64056803 64057084 188.0 + 0 ENSG00000237371.1 antisense AL355803.1 2 OTTHUMG00000033016.1 overlapping_locus +40741 chr20 HAVANA gene 64049836 64072347 4802.0 + 0 ENSG00000171703.16 protein_coding TCEA2 2 OTTHUMG00000033026.3 overlapping_locus +40742 chr20 ENSEMBL gene 64076955 64077010 56.0 - 0 ENSG00000274034.1 miRNA MIR6813 3 +40743 chr20 HAVANA gene 64073181 64079988 2028.0 - 0 ENSG00000171700.13 protein_coding RGS19 2 OTTHUMG00000033024.2 ncRNA_host +40744 chr20 HAVANA gene 64083380 64084359 868.0 - 0 ENSG00000171695.10 protein_coding LKAAEAR1 2 OTTHUMG00000033021.2 +40745 chr20 HAVANA gene 64080173 64100643 3549.0 + 0 ENSG00000125510.15 protein_coding OPRL1 2 OTTHUMG00000033027.1 +40746 chr20 HAVANA gene 64105820 64107171 1352.0 - 0 ENSG00000125522.3 protein_coding NPBWR2 2 OTTHUMG00000033032.1 retrogene +40747 chr20 HAVANA gene 64102394 64242253 6427.0 + 0 ENSG00000196132.12 protein_coding MYT1 2 OTTHUMG00000149988.5 +40748 chr20 HAVANA gene 64278306 64278561 256.0 + 0 ENSG00000278171.1 processed_pseudogene AL137028.2 2 OTTHUMG00000187990.1 +40749 chr20 HAVANA gene 64255695 64287821 5997.0 + 0 ENSG00000203880.11 protein_coding PCMTD2 2 OTTHUMG00000033029.5 +40750 chr20 HAVANA gene 64290187 64292998 2812.0 - 0 ENSG00000232852.1 processed_pseudogene CICP4 1 OTTHUMG00000033035.1 pseudo_consens +40751 chr20 HAVANA gene 64290385 64313132 1438.0 + 0 ENSG00000149656.8 lincRNA LINC00266-1 2 OTTHUMG00000033036.2 +40752 chr20 HAVANA gene 64327418 64327972 555.0 - 0 ENSG00000274727.1 processed_pseudogene AL137028.1 2 OTTHUMG00000187993.1 +40753 chr21 HAVANA gene 5011799 5017145 513.0 + 0 ENSG00000279493.1 protein_coding FP565260.4 2 OTTHUMG00000189354.1 +40754 chr21 HAVANA gene 5022493 5040666 3357.0 + 0 ENSG00000277117.4 protein_coding FP565260.3 2 OTTHUMG00000189355.1 +40755 chr21 HAVANA gene 5073458 5087867 479.0 + 0 ENSG00000279687.1 antisense FP565260.5 2 OTTHUMG00000189356.1 +40756 chr21 HAVANA gene 5079294 5128425 3106.0 - 0 ENSG00000280071.3 protein_coding GATD3B 2 OTTHUMG00000189357.3 overlapping_locus +40757 chr21 HAVANA gene 5116343 5133805 1599.0 - 0 ENSG00000276612.3 protein_coding FP565260.2 2 OTTHUMG00000189358.2 overlapping_locus +40758 chr21 HAVANA gene 5130871 5154734 7665.0 - 0 ENSG00000275464.4 protein_coding FP565260.1 2 OTTHUMG00000189361.2 overlapping_locus +40759 chr21 HAVANA gene 5155499 5165472 5411.0 - 0 ENSG00000280433.1 protein_coding FP565260.6 2 OTTHUMG00000189362.1 +40760 chr21 HAVANA gene 5232668 5243833 388.0 - 0 ENSG00000279669.1 lincRNA AC079801.1 2 OTTHUMG00000189363.1 +40761 chr21 HAVANA gene 5499151 5502542 1125.0 - 0 ENSG00000279094.3 lincRNA LINC01670 2 OTTHUMG00000189365.2 +40762 chr21 ENSEMBL gene 5597390 5597490 101.0 + 0 ENSG00000277777.1 misc_RNA RF00019 3 +40763 chr21 HAVANA gene 5553637 5614880 8756.0 + 0 ENSG00000274333.4 lincRNA CU633967.1 2 OTTHUMG00000189364.2 ncRNA_host +40764 chr21 HAVANA gene 5703182 5705637 2456.0 - 0 ENSG00000279186.1 TEC FP236315.2 2 OTTHUMG00000189486.1 +40765 chr21 HAVANA gene 5705345 5707160 307.0 + 0 ENSG00000279784.1 lincRNA FP236315.3 2 OTTHUMG00000189385.1 +40766 chr21 HAVANA gene 5707004 5709456 457.0 - 0 ENSG00000279064.1 lincRNA FP236315.1 2 OTTHUMG00000189386.1 +40767 chr21 HAVANA gene 5972924 5973383 460.0 - 0 ENSG00000274559.3 protein_coding H2BFS 2 OTTHUMG00000189387.2 +40768 chr21 HAVANA gene 6008604 6008810 207.0 + 0 ENSG00000280013.1 processed_pseudogene CU639417.2 2 OTTHUMG00000189388.1 +40769 chr21 HAVANA gene 6034690 6036093 1404.0 + 0 ENSG00000279769.1 TEC CU639417.1 2 OTTHUMG00000189389.1 +40770 chr21 HAVANA gene 6060340 6076305 1681.0 + 0 ENSG00000280191.3 lincRNA LINC01669 2 OTTHUMG00000189391.1 +40771 chr21 HAVANA gene 6081193 6082585 476.0 + 0 ENSG00000280095.1 lincRNA CU639417.3 2 OTTHUMG00000189392.1 +40772 chr21 HAVANA gene 6084364 6091407 3973.0 - 0 ENSG00000280179.1 lincRNA CU639417.4 2 OTTHUMG00000189393.1 +40773 chr21 HAVANA gene 6111134 6123739 4806.0 + 0 ENSG00000275993.2 protein_coding SIK1B 2 OTTHUMG00000189394.1 +40774 chr21 ENSEMBL gene 6223480 6223580 101.0 - 0 ENSG00000274790.1 misc_RNA RF00019 3 +40775 chr21 HAVANA gene 6228966 6267317 2878.0 - 0 ENSG00000275496.4 lincRNA CU633906.1 2 OTTHUMG00000189367.2 +40776 chr21 HAVANA gene 6272135 6276532 1023.0 - 0 ENSG00000280019.1 unprocessed_pseudogene CU633906.4 2 OTTHUMG00000189465.1 +40777 chr21 HAVANA gene 6309161 6312948 741.0 + 0 ENSG00000279709.1 unprocessed_pseudogene CU633906.3 2 OTTHUMG00000189487.1 +40778 chr21 HAVANA gene 6318434 6360415 3405.0 + 0 ENSG00000278903.3 lincRNA CU633906.2 2 OTTHUMG00000189376.2 +40779 chr21 ENSEMBL gene 6365955 6366055 101.0 + 0 ENSG00000276902.1 misc_RNA RF00019 3 +40780 chr21 HAVANA gene 6444869 6468040 4004.0 - 0 ENSG00000274276.4 protein_coding CBSL 2 OTTHUMG00000189375.2 +40781 chr21 HAVANA gene 6484623 6499261 11119.0 - 0 ENSG00000275895.6 protein_coding U2AF1L5 2 OTTHUMG00000189373.3 +40782 chr21 HAVANA gene 6507017 6507389 373.0 - 0 ENSG00000280346.1 processed_pseudogene FP236240.3 1 OTTHUMG00000189466.1 pseudo_consens +40783 chr21 HAVANA gene 6520344 6520670 327.0 - 0 ENSG00000279226.1 TEC FP236240.2 2 OTTHUMG00000189467.1 +40784 chr21 HAVANA gene 6550749 6553955 1052.0 - 0 ENSG00000278927.1 lincRNA FP236240.1 2 OTTHUMG00000189468.1 +40785 chr21 HAVANA gene 6560714 6564489 1660.0 + 0 ENSG00000276076.4 protein_coding CRYAA2 2 OTTHUMG00000189395.1 +40786 chr21 HAVANA gene 6667304 6670667 1097.0 - 0 ENSG00000278878.1 lincRNA CU638689.1 2 OTTHUMG00000189469.1 +40787 chr21 HAVANA gene 6630182 6670695 7492.0 - 0 ENSG00000280145.3 lincRNA CU638689.4 2 OTTHUMG00000189396.1 reference_genome_error +40788 chr21 HAVANA gene 6676178 6679962 1031.0 - 0 ENSG00000279788.1 unprocessed_pseudogene CU638689.3 2 OTTHUMG00000189488.1 +40789 chr21 HAVANA gene 6712596 6716361 818.0 + 0 ENSG00000279728.1 unprocessed_pseudogene CU638689.2 2 OTTHUMG00000189493.1 +40790 chr21 HAVANA gene 6721812 6725209 1032.0 + 0 ENSG00000280164.1 lincRNA CU638689.5 2 OTTHUMG00000189369.1 +40791 chr21 HAVANA gene 6789592 6812297 1612.0 + 0 ENSG00000279998.1 lincRNA FP475955.3 2 OTTHUMG00000189397.1 +40792 chr21 ENSEMBL gene 6859171 6859256 86.0 + 0 ENSG00000284550.1 miRNA MIR8069-1 3 +40793 chr21 HAVANA gene 6858539 6897263 553.0 + 0 ENSG00000278955.3 lincRNA FP475955.1 2 OTTHUMG00000189398.1 ncRNA_host +40794 chr21 HAVANA gene 6897291 6899280 1990.0 + 0 ENSG00000280172.1 processed_pseudogene FP475955.4 1 OTTHUMG00000189399.1 pseudo_consens +40795 chr21 HAVANA gene 6904884 6906692 458.0 + 0 ENSG00000279751.1 lincRNA FP475955.2 2 OTTHUMG00000189402.1 +40796 chr21 HAVANA gene 6994374 6997737 897.0 - 0 ENSG00000279313.1 lincRNA CU634019.4 2 OTTHUMG00000189470.1 +40797 chr21 HAVANA gene 6986450 6997765 1788.0 - 0 ENSG00000280018.3 lincRNA CU634019.6 2 OTTHUMG00000189403.1 reference_genome_error +40798 chr21 HAVANA gene 7003248 7007022 924.0 - 0 ENSG00000279477.1 unprocessed_pseudogene CU634019.5 2 OTTHUMG00000189489.2 +40799 chr21 HAVANA gene 7020599 7025166 593.0 + 0 ENSG00000278884.1 lincRNA CU634019.2 2 OTTHUMG00000189404.1 +40800 chr21 HAVANA gene 7048891 7087229 3058.0 + 0 ENSG00000277067.4 lincRNA CU634019.1 2 OTTHUMG00000189370.1 +40801 chr21 ENSEMBL gene 7092616 7092716 101.0 + 0 ENSG00000274046.1 misc_RNA RF00019 3 +40802 chr21 HAVANA gene 7129103 7130287 1185.0 + 0 ENSG00000280330.1 processed_pseudogene CU634019.7 1 OTTHUMG00000189471.1 pseudo_consens +40803 chr21 HAVANA gene 7135334 7137789 2456.0 - 0 ENSG00000279303.1 TEC CU634019.3 2 OTTHUMG00000189472.1 +40804 chr21 HAVANA gene 7385058 7388799 879.0 - 0 ENSG00000279647.1 unprocessed_pseudogene CU633904.2 2 OTTHUMG00000189490.1 +40805 chr21 HAVANA gene 7421442 7425839 1029.0 - 0 ENSG00000279895.1 unprocessed_pseudogene CU633904.3 2 OTTHUMG00000189494.1 +40806 chr21 HAVANA gene 7430659 7469007 3387.0 + 0 ENSG00000276077.4 lincRNA CU633904.1 2 OTTHUMG00000189371.1 +40807 chr21 ENSEMBL gene 7474394 7474494 101.0 + 0 ENSG00000274484.1 misc_RNA RF00019 3 +40808 chr21 HAVANA gene 7626344 7627528 1185.0 - 0 ENSG00000279177.1 processed_pseudogene FP236241.2 1 OTTHUMG00000189473.1 pseudo_consens +40809 chr21 ENSEMBL gene 7663911 7664011 101.0 - 0 ENSG00000276546.1 misc_RNA RF00019 3 +40810 chr21 HAVANA gene 7669397 7681742 7778.0 - 0 ENSG00000277991.4 lincRNA FP236241.1 2 OTTHUMG00000189411.1 +40811 chr21 HAVANA gene 7768884 7770591 1708.0 - 0 ENSG00000277277.3 protein_coding FAM243B 2 OTTHUMG00000189500.2 +40812 chr21 HAVANA gene 7744962 7777853 4324.0 + 0 ENSG00000273590.4 protein_coding SMIM11B 2 OTTHUMG00000189412.1 +40813 chr21 HAVANA gene 7784482 7793954 2469.0 - 0 ENSG00000278961.2 protein_coding SMIM34B 2 OTTHUMG00000189413.3 +40814 chr21 ENSEMBL gene 7826098 7826225 128.0 - 0 ENSG00000273614.1 snoRNA RF00614 3 +40815 chr21 HAVANA gene 7816675 7829926 3649.0 - 0 ENSG00000276289.4 protein_coding KCNE1B 2 OTTHUMG00000189416.3 ncRNA_host +40816 chr21 HAVANA gene 8101251 8103706 2456.0 - 0 ENSG00000279967.1 TEC FP671120.2 2 OTTHUMG00000189474.1 +40817 chr21 ENSEMBL gene 8205315 8205406 92.0 + 0 ENSG00000275950.1 miRNA MIR6724-1 3 +40818 chr21 ENSEMBL gene 8205851 8205940 90.0 + 0 ENSG00000275664.1 misc_RNA RF01518 3 +40819 chr21 ENSEMBL gene 8208473 8208652 180.0 + 0 ENSG00000275708.1 miRNA MIR3648-1 3 +40820 chr21 ENSEMBL gene 8208844 8208904 61.0 + 0 ENSG00000277437.1 miRNA MIR3687-1 3 +40821 chr21 HAVANA gene 8210384 8211306 923.0 - 0 ENSG00000280800.1 lincRNA FP671120.3 2 OTTHUMG00000189716.1 +40822 chr21 ENSEMBL gene 8212572 8212724 153.0 + 0 ENSG00000278233.1 rRNA RNA5-8SN2 3 +40823 chr21 HAVANA gene 8197620 8227646 2498.0 + 0 ENSG00000278996.1 lincRNA FP671120.1 2 OTTHUMG00000189417.1 ncRNA_host +40824 chr21 ENSEMBL gene 8249505 8249596 92.0 + 0 ENSG00000274060.1 miRNA MIR6724-2 3 +40825 chr21 ENSEMBL gene 8250060 8250149 90.0 + 0 ENSG00000277671.1 misc_RNA RF01518 3 +40826 chr21 HAVANA gene 8254592 8255514 923.0 - 0 ENSG00000281383.1 lincRNA FP671120.4 2 OTTHUMG00000189717.1 +40827 chr21 ENSEMBL gene 8256781 8256933 153.0 + 0 ENSG00000277739.1 rRNA RNA5-8SN2 3 +40828 chr21 ENSEMBL gene 8388362 8388453 92.0 + 0 ENSG00000277379.1 miRNA MIR6724-3 3 +40829 chr21 ENSEMBL gene 8388898 8388987 90.0 + 0 ENSG00000274868.1 misc_RNA RF01518 3 +40830 chr21 HAVANA gene 8393419 8394341 923.0 - 0 ENSG00000280614.1 lincRNA FP236383.2 2 OTTHUMG00000189718.1 +40831 chr21 ENSEMBL gene 8395607 8395759 153.0 + 0 ENSG00000275215.1 rRNA RNA5-8SN2 3 +40832 chr21 HAVANA gene 8380665 8410645 2498.0 + 0 ENSG00000280441.2 lincRNA FP236383.1 2 OTTHUMG00000189419.2 ncRNA_host +40833 chr21 ENSEMBL gene 8432530 8432621 92.0 + 0 ENSG00000275692.1 miRNA MIR6724-4 3 +40834 chr21 ENSEMBL gene 8433085 8433174 90.0 + 0 ENSG00000278775.1 misc_RNA RF01518 3 +40835 chr21 HAVANA gene 8437629 8438551 923.0 - 0 ENSG00000281181.1 lincRNA FP236383.3 2 OTTHUMG00000189719.1 +40836 chr21 ENSEMBL gene 8439823 8439975 153.0 + 0 ENSG00000278189.1 rRNA RNA5-8SN2 3 +40837 chr21 HAVANA gene 8603547 8603984 438.0 + 0 ENSG00000279990.1 processed_pseudogene RPSAP68 1 OTTHUMG00000189475.1 pseudo_consens +40838 chr21 HAVANA gene 8680538 8680934 397.0 - 0 ENSG00000279615.1 processed_pseudogene CR381572.2 2 OTTHUMG00000189438.1 +40839 chr21 HAVANA gene 8701461 8701562 102.0 + 0 ENSG00000279167.1 processed_pseudogene CR381572.1 2 OTTHUMG00000189476.1 +40840 chr21 HAVANA gene 8759077 8761335 845.0 + 0 ENSG00000279579.3 lincRNA LINC01666 2 OTTHUMG00000189439.1 +40841 chr21 HAVANA gene 8801362 8801880 519.0 - 0 ENSG00000279213.1 processed_pseudogene SNX18P10 2 OTTHUMG00000189477.1 +40842 chr21 HAVANA gene 8845566 8846646 1081.0 + 0 ENSG00000280243.1 processed_pseudogene MTCO1P1 2 OTTHUMG00000189421.1 +40843 chr21 HAVANA gene 8857260 8880976 1693.0 + 0 ENSG00000278931.1 unprocessed_pseudogene CR381670.1 2 OTTHUMG00000189440.1 +40844 chr21 ENSEMBL gene 8986999 8987178 180.0 + 0 ENSG00000264462.1 miRNA MIR3648-2 3 +40845 chr21 ENSEMBL gene 8987370 8987430 61.0 + 0 ENSG00000264063.1 miRNA MIR3687-2 3 +40846 chr21 HAVANA gene 8996496 9018670 227.0 - 0 ENSG00000279501.1 lincRNA CR392039.3 2 OTTHUMG00000189478.1 +40847 chr21 HAVANA gene 9026821 9027329 509.0 - 0 ENSG00000279414.1 processed_pseudogene CR392039.2 2 OTTHUMG00000189479.1 +40848 chr21 HAVANA gene 9053122 9059060 510.0 + 0 ENSG00000280436.1 unprocessed_pseudogene CR392039.5 2 OTTHUMG00000189441.1 +40849 chr21 HAVANA gene 9082601 9083101 501.0 - 0 ENSG00000279720.1 processed_pseudogene CR392039.4 2 OTTHUMG00000189480.1 +40850 chr21 HAVANA gene 9088188 9088391 204.0 + 0 ENSG00000279381.1 processed_pseudogene CR392039.1 2 OTTHUMG00000189481.1 +40851 chr21 HAVANA gene 9068361 9129752 2309.0 - 0 ENSG00000188681.11 transcribed_unprocessed_pseudogene TEKT4P2 2 OTTHUMG00000172149.1 +40852 chr21 HAVANA gene 9364467 9365225 759.0 - 0 ENSG00000279718.1 processed_pseudogene SNX18P12 1 OTTHUMG00000189482.1 pseudo_consens +40853 chr21 HAVANA gene 9325013 9368775 1880.0 + 0 ENSG00000278932.3 lincRNA CR381653.1 2 OTTHUMG00000189442.1 +40854 chr21 HAVANA gene 9369285 9376645 768.0 - 0 ENSG00000279208.1 unprocessed_pseudogene CR381653.2 2 OTTHUMG00000189443.1 +40855 chr21 HAVANA gene 9558970 9559155 186.0 + 0 ENSG00000279864.1 processed_pseudogene AC124864.2 2 OTTHUMG00000189451.2 +40856 chr21 HAVANA gene 9580024 9580415 392.0 - 0 ENSG00000279211.1 processed_pseudogene AC124864.1 2 OTTHUMG00000189456.1 +40857 chr21 ENSEMBL gene 9646825 9647000 176.0 + 0 ENSG00000275631.1 snRNA RF00003 3 +40858 chr21 HAVANA gene 9810381 9810503 123.0 - 0 ENSG00000280075.1 processed_pseudogene AC018692.3 2 OTTHUMG00000189458.2 overlapping_locus +40859 chr21 HAVANA gene 9810501 9810848 348.0 + 0 ENSG00000279783.1 processed_pseudogene AC018692.2 2 OTTHUMG00000189459.1 +40860 chr21 HAVANA gene 9781918 9814009 2485.0 - 0 ENSG00000280081.3 lincRNA LINC01667 2 OTTHUMG00000189457.2 overlapping_locus +40861 chr21 ENSEMBL gene 9902344 9902627 284.0 - 0 ENSG00000264002.2 misc_RNA RN7SL52P 3 +40862 chr21 ENSEMBL gene 9907916 9908010 95.0 + 0 ENSG00000252199.1 snoRNA RF00156 3 +40863 chr21 HAVANA gene 9913117 9914846 920.0 + 0 ENSG00000279321.1 lincRNA AC018692.1 2 OTTHUMG00000189461.1 +40864 chr21 HAVANA gene 10028361 10029855 1495.0 - 0 ENSG00000280372.1 TEC CR382285.2 2 OTTHUMG00000189483.1 +40865 chr21 HAVANA gene 9975017 10119309 1856.0 - 0 ENSG00000270533.2 transcribed_processed_pseudogene CR382285.1 1 OTTHUMG00000184872.2 pseudo_consens +40866 chr21 HAVANA gene 10122273 10129029 1942.0 + 0 ENSG00000279851.2 lincRNA CR382287.2 2 OTTHUMG00000189484.2 +40867 chr21 HAVANA gene 10136419 10137004 586.0 + 0 ENSG00000279062.1 unprocessed_pseudogene CR382287.1 2 OTTHUMG00000189485.1 +40868 chr21 HAVANA gene 10330732 10331537 806.0 + 0 ENSG00000275945.1 processed_pseudogene EIF3FP1 1 OTTHUMG00000188301.1 pseudo_consens +40869 chr21 HAVANA gene 10328411 10342737 927.0 - 0 ENSG00000277693.1 lincRNA AP003900.1 2 OTTHUMG00000188300.1 +40870 chr21 HAVANA gene 10357400 10358620 903.0 + 0 ENSG00000275592.1 processed_pseudogene VN1R7P 2 OTTHUMG00000188302.1 +40871 chr21 HAVANA gene 10397644 10397778 135.0 + 0 ENSG00000278106.1 unprocessed_pseudogene AF254983.2 2 OTTHUMG00000188251.1 +40872 chr21 HAVANA gene 10413477 10516431 4080.0 + 0 ENSG00000187172.15 transcribed_unprocessed_pseudogene BAGE2 2 OTTHUMG00000074128.5 overlapping_locus +40873 chr21 HAVANA gene 10576292 10576587 296.0 + 0 ENSG00000278678.1 processed_pseudogene CYCSP41 1 OTTHUMG00000188253.1 pseudo_consens +40874 chr21 HAVANA gene 10482738 10605716 3336.0 + 0 ENSG00000273840.1 processed_transcript AF254983.1 2 OTTHUMG00000188252.1 +40875 chr21 HAVANA gene 10521553 10606140 2596.0 + 0 ENSG00000274391.4 protein_coding TPTE 2 OTTHUMG00000074127.15 overlapping_locus +40876 chr21 HAVANA gene 10612455 10613379 289.0 - 0 ENSG00000273872.1 unprocessed_pseudogene SLC25A15P4 2 OTTHUMG00000188293.1 +40877 chr21 HAVANA gene 10640028 10640338 311.0 - 0 ENSG00000276556.1 unprocessed_pseudogene AF254982.1 2 OTTHUMG00000188294.1 +40878 chr21 HAVANA gene 10649400 10649835 353.0 - 0 ENSG00000277282.1 IG_V_gene IGHV1OR21-1 2 OTTHUMG00000188295.2 +40879 chr21 HAVANA gene 12999676 13016692 323.0 - 0 ENSG00000229306.1 lincRNA AP001464.1 2 OTTHUMG00000074167.1 +40880 chr21 ENSEMBL gene 13047583 13047689 107.0 + 0 ENSG00000207097.1 snRNA RNU6-614P 3 +40881 chr21 HAVANA gene 13038160 13067033 5110.0 + 0 ENSG00000224309.7 transcribed_unprocessed_pseudogene ANKRD30BP2 2 OTTHUMG00000074164.3 +40882 chr21 HAVANA gene 13095305 13113790 3216.0 - 0 ENSG00000168122.4 unprocessed_pseudogene ZNF355P 2 OTTHUMG00000074165.1 +40883 chr21 HAVANA gene 13120244 13120807 564.0 + 0 ENSG00000237202.1 processed_pseudogene AJ239321.1 1 OTTHUMG00000155589.1 pseudo_consens +40884 chr21 HAVANA gene 13305152 13314944 607.0 + 0 ENSG00000280108.2 lincRNA AJ239318.1 2 OTTHUMG00000192091.1 +40885 chr21 HAVANA gene 13349265 13350648 296.0 + 0 ENSG00000185390.2 unprocessed_pseudogene FGF7P2 2 OTTHUMG00000074196.1 +40886 chr21 ENSEMBL gene 13406384 13406460 77.0 - 0 ENSG00000266211.1 miRNA MIR3156-3 3 +40887 chr21 HAVANA gene 13384249 13427773 2186.0 - 0 ENSG00000175302.5 unprocessed_pseudogene ANKRD30BP1 1 OTTHUMG00000074201.1 pseudo_consens +40888 chr21 HAVANA gene 13476371 13477263 893.0 + 0 ENSG00000219280.1 processed_pseudogene VN1R8P 2 OTTHUMG00000074205.1 +40889 chr21 HAVANA gene 13443373 13489176 697.0 - 0 ENSG00000226930.1 unprocessed_pseudogene GTF2IP2 2 OTTHUMG00000074198.1 +40890 chr21 HAVANA gene 13525599 13528579 2981.0 + 0 ENSG00000228184.1 processed_pseudogene SNX19P1 1 OTTHUMG00000074199.1 pseudo_consens +40891 chr21 HAVANA gene 13544210 13545185 976.0 - 0 ENSG00000179381.8 unprocessed_pseudogene OR4K11P 2 OTTHUMG00000074202.2 +40892 chr21 HAVANA gene 13546033 13558461 504.0 + 0 ENSG00000228159.1 lincRNA LINC01674 1 OTTHUMG00000074207.1 +40893 chr21 HAVANA gene 13581060 13582004 945.0 - 0 ENSG00000218549.2 unprocessed_pseudogene OR4K12P 2 OTTHUMG00000074203.2 +40894 chr21 ENSEMBL gene 13621577 13621683 107.0 + 0 ENSG00000207476.1 snRNA RNU6-286P 3 +40895 chr21 HAVANA gene 13609858 13641585 2636.0 + 0 ENSG00000166351.10 protein_coding POTED 2 OTTHUMG00000074197.1 ncRNA_host +40896 chr21 ENSEMBL gene 13644775 13644850 76.0 - 0 ENSG00000266299.1 miRNA MIR3118-1 3 +40897 chr21 HAVANA gene 13654073 13654356 284.0 + 0 ENSG00000278381.1 processed_pseudogene AL050303.3 2 OTTHUMG00000187951.1 +40898 chr21 HAVANA gene 13665868 13667546 1110.0 - 0 ENSG00000227874.1 processed_pseudogene GRAMD4P1 1 OTTHUMG00000155592.1 pseudo_consens +40899 chr21 HAVANA gene 13676022 13677116 1095.0 + 0 ENSG00000214319.2 processed_pseudogene CXADRP1 2 OTTHUMG00000074204.1 +40900 chr21 HAVANA gene 13679300 13681138 1839.0 - 0 ENSG00000279773.1 TEC AL050303.4 2 OTTHUMG00000187360.1 +40901 chr21 HAVANA gene 13704853 13705518 666.0 + 0 ENSG00000273692.1 processed_pseudogene AL050303.2 2 OTTHUMG00000187952.1 +40902 chr21 ENSEMBL gene 13724189 13724274 86.0 + 0 ENSG00000278618.1 miRNA MIR8069-2 3 +40903 chr21 HAVANA gene 13762338 13764332 1995.0 + 0 ENSG00000229231.1 processed_pseudogene FEM1AP1 1 OTTHUMG00000074206.1 pseudo_consens +40904 chr21 HAVANA gene 13769932 13771740 458.0 + 0 ENSG00000224922.1 lincRNA AL050303.1 1 OTTHUMG00000074200.1 +40905 chr21 HAVANA gene 13776086 13777266 1181.0 + 0 ENSG00000173231.6 processed_pseudogene TERF1P1 1 OTTHUMG00000074234.1 pseudo_consens +40906 chr21 HAVANA gene 13792635 13793141 507.0 + 0 ENSG00000232797.1 processed_pseudogene FAM207CP 1 OTTHUMG00000074236.1 pseudo_consens +40907 chr21 HAVANA gene 13824406 13825635 1230.0 - 0 ENSG00000224860.1 processed_pseudogene GXYLT1P2 1 OTTHUMG00000074230.1 pseudo_consens +40908 chr21 HAVANA gene 13826696 13827627 932.0 + 0 ENSG00000215562.2 processed_pseudogene CNN2P7 1 OTTHUMG00000074231.1 pseudo_consens +40909 chr21 HAVANA gene 13839118 13839409 292.0 + 0 ENSG00000234538.1 processed_pseudogene ZNF114P1 2 OTTHUMG00000155503.1 +40910 chr21 HAVANA gene 13843133 13848364 1717.0 - 0 ENSG00000228314.1 transcribed_unprocessed_pseudogene CYP4F29P 2 OTTHUMG00000074229.2 +40911 chr21 HAVANA gene 13905960 13906488 529.0 - 0 ENSG00000230965.1 processed_pseudogene SNX18P13 2 OTTHUMG00000155490.1 +40912 chr21 HAVANA gene 13936993 13937325 333.0 - 0 ENSG00000203616.2 processed_pseudogene RHOT1P2 1 OTTHUMG00000155588.1 pseudo_consens,overlapping_locus +40913 chr21 ENSEMBL gene 13968489 13968595 107.0 - 0 ENSG00000223287.1 snRNA RNU6-954P 3 +40914 chr21 HAVANA gene 13909574 13980437 4842.0 - 0 ENSG00000215559.8 transcribed_unprocessed_pseudogene ANKRD20A11P 1 OTTHUMG00000074237.2 pseudo_consens,overlapping_locus +40915 chr21 HAVANA gene 14000927 14005279 450.0 + 0 ENSG00000183249.8 unprocessed_pseudogene NF1P3 2 OTTHUMG00000074232.1 +40916 chr21 HAVANA gene 14007134 14014880 1275.0 + 0 ENSG00000233442.2 unprocessed_pseudogene PPP6R2P1 2 OTTHUMG00000074233.1 +40917 chr21 HAVANA gene 14019060 14020725 856.0 - 0 ENSG00000275170.1 processed_pseudogene FRG2MP 2 OTTHUMG00000187953.1 +40918 chr21 HAVANA gene 14064325 14069087 492.0 + 0 ENSG00000249493.1 unprocessed_pseudogene ANKRD20A18P 2 OTTHUMG00000074259.1 overlapping_locus +40919 chr21 ENSEMBL gene 14070871 14070986 116.0 + 0 ENSG00000201812.1 rRNA_pseudogene RNA5SP488 3 +40920 chr21 ENSEMBL gene 14075950 14076038 89.0 - 0 ENSG00000277572.1 misc_RNA RF01518 3 +40921 chr21 HAVANA gene 14143581 14144158 578.0 + 0 ENSG00000240755.1 processed_pseudogene ERLEC1P1 1 OTTHUMG00000155493.1 pseudo_consens,overlapping_locus +40922 chr21 HAVANA gene 14027421 14144468 1770.0 + 0 ENSG00000224905.6 antisense AP001347.1 2 OTTHUMG00000074260.1 overlapping_locus +40923 chr21 HAVANA gene 14108813 14210891 1744.0 - 0 ENSG00000188992.11 protein_coding LIPI 2 OTTHUMG00000074258.5 +40924 chr21 HAVANA gene 14216130 14228372 2360.0 + 0 ENSG00000185272.13 protein_coding RBM11 2 OTTHUMG00000074263.1 +40925 chr21 HAVANA gene 14236206 14362754 10722.0 + 0 ENSG00000243064.8 transcribed_unprocessed_pseudogene ABCC13 1 OTTHUMG00000074257.3 +40926 chr21 HAVANA gene 14371115 14383484 4194.0 - 0 ENSG00000155304.5 protein_coding HSPA13 2 OTTHUMG00000074261.1 +40927 chr21 HAVANA gene 14582202 14598303 840.0 + 0 ENSG00000223662.1 antisense SAMSN1-AS1 2 OTTHUMG00000074321.2 +40928 chr21 HAVANA gene 14485228 14658821 5185.0 - 0 ENSG00000155307.18 protein_coding SAMSN1 2 OTTHUMG00000074317.2 +40929 chr21 HAVANA gene 14746762 14753863 1863.0 - 0 ENSG00000232884.7 lincRNA AF127936.2 2 OTTHUMG00000074314.4 +40930 chr21 HAVANA gene 14757588 14758352 765.0 + 0 ENSG00000228600.1 processed_pseudogene POLR2CP1 1 OTTHUMG00000074316.1 pseudo_consens +40931 chr21 HAVANA gene 14761710 14763090 695.0 - 0 ENSG00000226751.2 lincRNA AF127936.1 1 OTTHUMG00000074319.2 +40932 chr21 HAVANA gene 14774301 14775262 962.0 + 0 ENSG00000225502.2 processed_pseudogene GAPDHP16 1 OTTHUMG00000074324.2 pseudo_consens +40933 chr21 HAVANA gene 14829154 14829989 836.0 - 0 ENSG00000226406.1 processed_pseudogene RBMX2P1 1 OTTHUMG00000074320.1 pseudo_consens,overlapping_locus +40934 chr21 HAVANA gene 14819699 14918552 3635.0 - 0 ENSG00000281903.2 lincRNA LINC02246 2 OTTHUMG00000074322.6 overlapping_locus +40935 chr21 HAVANA gene 14918534 14947096 781.0 + 0 ENSG00000235277.1 antisense AF127577.3 2 OTTHUMG00000074318.1 +40936 chr21 HAVANA gene 14961309 14964233 562.0 + 0 ENSG00000229047.1 antisense AF127577.1 2 OTTHUMG00000074325.1 +40937 chr21 HAVANA gene 14971470 14992854 824.0 + 0 ENSG00000231201.1 antisense AF127577.2 2 OTTHUMG00000074330.1 +40938 chr21 HAVANA gene 14818843 15014430 5929.0 - 0 ENSG00000235609.7 lincRNA AF127577.4 2 OTTHUMG00000189713.1 overlapping_locus +40939 chr21 HAVANA gene 15050189 15052379 2191.0 + 0 ENSG00000279390.1 TEC AF127577.6 2 OTTHUMG00000177446.1 +40940 chr21 HAVANA gene 14961235 15065936 8497.0 - 0 ENSG00000180530.10 protein_coding NRIP1 2 OTTHUMG00000074323.3 overlapping_locus +40941 chr21 HAVANA gene 15067070 15067837 446.0 + 0 ENSG00000236471.1 lincRNA AF127577.5 1 OTTHUMG00000074332.1 +40942 chr21 HAVANA gene 15346652 15346738 87.0 + 0 ENSG00000280082.1 TEC AF246928.1 2 OTTHUMG00000172752.1 +40943 chr21 HAVANA gene 15490530 15490767 238.0 - 0 ENSG00000224524.1 processed_pseudogene CYCSP42 2 OTTHUMG00000074331.1 +40944 chr21 HAVANA gene 15493932 15496124 1376.0 - 0 ENSG00000224247.1 lincRNA AJ009632.1 2 OTTHUMG00000078773.1 +40945 chr21 ENSEMBL gene 15614283 15614389 107.0 + 0 ENSG00000212564.1 snRNA RNU6-1326P 3 +40946 chr21 HAVANA gene 15370500 15627342 8941.0 - 0 ENSG00000229425.2 lincRNA AJ009632.2 2 OTTHUMG00000074333.3 +40947 chr21 HAVANA gene 15694300 15696581 1152.0 - 0 ENSG00000226298.1 processed_pseudogene RAD23BP3 2 OTTHUMG00000074344.1 +40948 chr21 HAVANA gene 15744004 15745080 502.0 - 0 ENSG00000234159.1 processed_pseudogene RBPMSLP 1 OTTHUMG00000074345.1 pseudo_consens +40949 chr21 HAVANA gene 15730025 15880069 7823.0 + 0 ENSG00000155313.15 protein_coding USP25 2 OTTHUMG00000074343.3 +40950 chr21 ENSEMBL gene 16035413 16035509 97.0 - 0 ENSG00000252273.1 snRNA RNU6-426P 3 +40951 chr21 HAVANA gene 16094415 16095372 958.0 - 0 ENSG00000214976.2 processed_pseudogene VDAC2P1 1 OTTHUMG00000074376.2 pseudo_consens +40952 chr21 HAVANA gene 16121310 16121644 335.0 - 0 ENSG00000224602.1 processed_pseudogene RPS26P5 1 OTTHUMG00000074375.1 pseudo_consens +40953 chr21 ENSEMBL gene 16284696 16284768 73.0 - 0 ENSG00000201025.1 snoRNA SNORD74B 3 +40954 chr21 HAVANA gene 16291791 16308133 581.0 - 0 ENSG00000270071.1 lincRNA AP001172.1 2 OTTHUMG00000184146.2 +40955 chr21 HAVANA gene 16417139 16419080 467.0 - 0 ENSG00000270139.1 lincRNA AP001172.2 2 OTTHUMG00000184148.1 +40956 chr21 HAVANA gene 16525919 16527019 1101.0 + 0 ENSG00000280432.1 TEC AP000962.2 2 OTTHUMG00000184149.1 overlapping_locus +40957 chr21 ENSEMBL gene 16539089 16539169 81.0 + 0 ENSG00000207638.1 miRNA MIR99A 3 +40958 chr21 ENSEMBL gene 16539828 16539911 84.0 + 0 ENSG00000199030.2 miRNA MIRLET7C 3 +40959 chr21 HAVANA gene 16574718 16582637 729.0 - 0 ENSG00000269950.1 lincRNA AP000962.1 2 OTTHUMG00000184150.1 +40960 chr21 ENSEMBL gene 16590237 16590325 89.0 + 0 ENSG00000207863.1 miRNA MIR125B2 3 +40961 chr21 HAVANA gene 15928296 16645065 11353.0 + 0 ENSG00000215386.12 lincRNA MIR99AHG 2 OTTHUMG00000074377.5 ncRNA_host +40962 chr21 ENSEMBL gene 16718998 16719157 160.0 + 0 ENSG00000239023.1 snRNA RNU1-98P 3 +40963 chr21 HAVANA gene 16754519 16815688 438.0 - 0 ENSG00000237735.2 lincRNA AF130359.1 2 OTTHUMG00000074394.2 +40964 chr21 HAVANA gene 16862875 16873691 377.0 - 0 ENSG00000232886.1 lincRNA AF212831.1 2 OTTHUMG00000074395.1 +40965 chr21 HAVANA gene 17210469 17211347 879.0 - 0 ENSG00000225735.1 processed_pseudogene NEK4P1 1 OTTHUMG00000074393.1 pseudo_consens +40966 chr21 HAVANA gene 17296219 17296596 378.0 + 0 ENSG00000278181.1 processed_pseudogene AP000457.1 2 OTTHUMG00000187954.1 +40967 chr21 ENSEMBL gene 17431547 17431647 101.0 + 0 ENSG00000252462.1 snRNA RNU6-113P 3 +40968 chr21 HAVANA gene 17438890 17449185 714.0 + 0 ENSG00000232560.6 lincRNA LINC01549 2 OTTHUMG00000074397.1 +40969 chr21 HAVANA gene 17500679 17500824 146.0 - 0 ENSG00000226580.1 processed_pseudogene RPL39P40 1 OTTHUMG00000074503.1 pseudo_consens +40970 chr21 ENSEMBL gene 17506453 17506728 276.0 + 0 ENSG00000266195.2 misc_RNA RN7SL163P 3 +40971 chr21 HAVANA gene 17518526 17518993 468.0 - 0 ENSG00000232260.2 processed_pseudogene BTF3L4P1 1 OTTHUMG00000074502.2 pseudo_consens +40972 chr21 ENSEMBL gene 17527140 17527247 108.0 - 0 ENSG00000200754.1 misc_RNA RF00019 3 +40973 chr21 ENSEMBL gene 17576798 17576906 109.0 + 0 ENSG00000199962.1 misc_RNA RF00019 3 +40974 chr21 HAVANA gene 17512382 17593579 6682.0 + 0 ENSG00000154639.18 protein_coding CXADR 2 OTTHUMG00000074508.3 ncRNA_host +40975 chr21 HAVANA gene 17593653 17612947 2306.0 - 0 ENSG00000154640.14 protein_coding BTG3 2 OTTHUMG00000074501.4 +40976 chr21 HAVANA gene 17611744 17633199 2578.0 + 0 ENSG00000280594.1 processed_transcript BTG3-AS1 2 OTTHUMG00000190270.1 +40977 chr21 HAVANA gene 17659276 17660384 516.0 - 0 ENSG00000226956.1 lincRNA AP000432.1 1 OTTHUMG00000074507.1 +40978 chr21 HAVANA gene 17705408 17707455 2048.0 + 0 ENSG00000279648.1 TEC AP000432.2 2 OTTHUMG00000177531.1 +40979 chr21 HAVANA gene 17763315 17792523 998.0 - 0 ENSG00000240770.5 lincRNA C21orf91-OT1 2 OTTHUMG00000074506.1 overlapping_locus +40980 chr21 HAVANA gene 17793488 17810845 454.0 + 0 ENSG00000244676.5 antisense AL109761.1 1 OTTHUMG00000074504.1 +40981 chr21 HAVANA gene 17788967 17819386 6235.0 - 0 ENSG00000154642.10 protein_coding C21orf91 1 OTTHUMG00000074509.7 overlapping_locus +40982 chr21 HAVANA gene 17835016 17885608 1117.0 - 0 ENSG00000231755.1 lincRNA CHODL-AS1 2 OTTHUMG00000074500.1 +40983 chr21 HAVANA gene 17894193 17894485 293.0 - 0 ENSG00000215369.3 processed_pseudogene RPL37P3 1 OTTHUMG00000074505.1 pseudo_consens +40984 chr21 HAVANA gene 18022370 18114904 478.0 - 0 ENSG00000227330.1 lincRNA AF130417.1 2 OTTHUMG00000074517.1 +40985 chr21 HAVANA gene 17901263 18267373 3093.0 + 0 ENSG00000154645.13 protein_coding CHODL 2 OTTHUMG00000074519.6 +40986 chr21 HAVANA gene 18269116 18485879 4233.0 - 0 ENSG00000154646.8 protein_coding TMPRSS15 2 OTTHUMG00000074518.7 overlapping_locus +40987 chr21 HAVANA gene 18477358 18486599 461.0 - 0 ENSG00000228708.1 sense_overlapping AL109763.1 2 OTTHUMG00000074548.1 overlapping_locus +40988 chr21 HAVANA gene 18614431 18650360 879.0 + 0 ENSG00000230233.1 lincRNA AF240627.1 2 OTTHUMG00000074543.1 +40989 chr21 ENSEMBL gene 18686090 18686164 75.0 - 0 ENSG00000265841.1 miRNA MIR548X 3 +40990 chr21 HAVANA gene 18561265 18760003 1454.0 - 0 ENSG00000224141.5 lincRNA MIR548XHG 2 OTTHUMG00000074544.1 ncRNA_host +40991 chr21 HAVANA gene 18857779 18858276 498.0 + 0 ENSG00000198618.5 processed_pseudogene PPIAP22 2 OTTHUMG00000074545.1 +40992 chr21 HAVANA gene 18917213 18917429 217.0 + 0 ENSG00000279156.1 TEC AL157359.3 2 OTTHUMG00000172749.1 +40993 chr21 HAVANA gene 18917934 18935859 784.0 - 0 ENSG00000232193.1 lincRNA AL157359.2 2 OTTHUMG00000074549.1 +40994 chr21 HAVANA gene 18953264 18967058 424.0 - 0 ENSG00000226204.1 lincRNA AL157359.1 2 OTTHUMG00000074546.1 +40995 chr21 HAVANA gene 19046310 19047684 790.0 - 0 ENSG00000235965.2 lincRNA AP000431.2 2 OTTHUMG00000074542.2 +40996 chr21 HAVANA gene 19130523 19134423 469.0 + 0 ENSG00000229289.1 lincRNA AP000431.1 2 OTTHUMG00000074550.1 +40997 chr21 HAVANA gene 19244543 19246392 1850.0 + 0 ENSG00000226818.1 processed_pseudogene SLC6A6P1 1 OTTHUMG00000074547.1 pseudo_consens +40998 chr21 HAVANA gene 19301613 19303739 636.0 + 0 ENSG00000231620.1 lincRNA AP000855.1 2 OTTHUMG00000074551.1 +40999 chr21 ENSEMBL gene 19345148 19345312 165.0 + 0 ENSG00000212609.1 snRNA RNU1-139P 3 +41000 chr21 HAVANA gene 19593841 19594108 268.0 + 0 ENSG00000230198.1 processed_pseudogene RPL37P4 1 OTTHUMG00000074608.1 pseudo_consens +41001 chr21 HAVANA gene 19620695 19621545 851.0 + 0 ENSG00000271486.1 processed_pseudogene AP000403.1 1 OTTHUMG00000184880.1 pseudo_consens +41002 chr21 HAVANA gene 19739709 19740150 442.0 + 0 ENSG00000229336.1 processed_pseudogene AP000568.1 1 OTTHUMG00000074609.2 pseudo_consens +41003 chr21 HAVANA gene 19759359 19760128 770.0 - 0 ENSG00000215353.2 processed_pseudogene C1QBPP1 1 OTTHUMG00000074605.1 pseudo_consens +41004 chr21 HAVANA gene 19893279 19899755 412.0 - 0 ENSG00000233480.1 lincRNA LINC01683 2 OTTHUMG00000074607.2 +41005 chr21 HAVANA gene 20256752 20258820 864.0 - 0 ENSG00000233236.1 lincRNA LINC02573 2 OTTHUMG00000074606.1 +41006 chr21 ENSEMBL gene 20355748 20355852 105.0 - 0 ENSG00000251851.1 snRNA RNU6-772P 3 +41007 chr21 ENSEMBL gene 20356653 20356896 244.0 + 0 ENSG00000252963.1 misc_RNA RN7SKP147 3 +41008 chr21 HAVANA gene 20388334 20388845 512.0 + 0 ENSG00000233676.2 processed_pseudogene FDPSP6 1 OTTHUMG00000078059.2 pseudo_consens +41009 chr21 HAVANA gene 20424949 20426206 1258.0 - 0 ENSG00000234439.1 processed_pseudogene KRT18P2 1 OTTHUMG00000078062.1 pseudo_consens +41010 chr21 HAVANA gene 20430443 20430762 320.0 - 0 ENSG00000233206.1 processed_pseudogene RPS3AP1 1 OTTHUMG00000078061.1 pseudo_consens +41011 chr21 HAVANA gene 20597953 20598163 211.0 + 0 ENSG00000276738.1 processed_pseudogene AP001506.1 2 OTTHUMG00000187955.1 +41012 chr21 HAVANA gene 20742590 20803216 2325.0 - 0 ENSG00000224924.6 lincRNA LINC00320 2 OTTHUMG00000078063.2 +41013 chr21 HAVANA gene 20828127 20828622 496.0 - 0 ENSG00000215351.3 processed_pseudogene PPIAP1 1 OTTHUMG00000078060.1 pseudo_consens +41014 chr21 HAVANA gene 21223295 21226829 635.0 - 0 ENSG00000226771.1 antisense AP001136.1 2 OTTHUMG00000078120.1 +41015 chr21 HAVANA gene 20998315 21543329 8380.0 + 0 ENSG00000154654.14 protein_coding NCAM2 2 OTTHUMG00000078121.3 +41016 chr21 HAVANA gene 21566763 21615437 609.0 + 0 ENSG00000234730.1 lincRNA AP001117.1 2 OTTHUMG00000078122.1 +41017 chr21 HAVANA gene 21655038 21686329 480.0 - 0 ENSG00000237527.1 lincRNA AF241725.1 2 OTTHUMG00000078124.1 +41018 chr21 HAVANA gene 21723293 21737319 612.0 - 0 ENSG00000238265.1 lincRNA LINC00317 2 OTTHUMG00000078123.1 +41019 chr21 HAVANA gene 21746973 21797415 772.0 + 0 ENSG00000233997.5 lincRNA LINC01425 2 OTTHUMG00000078125.1 +41020 chr21 HAVANA gene 21933315 21975681 530.0 - 0 ENSG00000227075.1 lincRNA AP000472.1 1 OTTHUMG00000078257.1 +41021 chr21 HAVANA gene 22008944 22098459 1486.0 - 0 ENSG00000233215.5 lincRNA LINC01687 2 OTTHUMG00000078243.1 +41022 chr21 HAVANA gene 22098617 22116528 727.0 + 0 ENSG00000184856.6 lincRNA LINC00308 2 OTTHUMG00000078244.2 +41023 chr21 HAVANA gene 22134698 22136083 1386.0 - 0 ENSG00000234340.1 processed_pseudogene AP000705.2 2 OTTHUMG00000156301.1 +41024 chr21 HAVANA gene 22153950 22154299 350.0 - 0 ENSG00000231136.1 processed_pseudogene AP000705.1 2 OTTHUMG00000078252.1 +41025 chr21 ENSEMBL gene 22205192 22205332 141.0 + 0 ENSG00000202339.1 snRNA RNU4-45P 3 +41026 chr21 HAVANA gene 22209939 22420819 435.0 + 0 ENSG00000226043.1 lincRNA AP000561.1 2 OTTHUMG00000078249.1 +41027 chr21 HAVANA gene 22436290 22438349 2060.0 - 0 ENSG00000223488.2 processed_pseudogene MAPK6P2 1 OTTHUMG00000078251.1 pseudo_consens +41028 chr21 HAVANA gene 22500604 22520058 977.0 - 0 ENSG00000234034.1 lincRNA AP000959.1 2 OTTHUMG00000078247.1 +41029 chr21 HAVANA gene 22882582 22884000 629.0 + 0 ENSG00000225906.1 processed_pseudogene AP000949.1 2 OTTHUMG00000078254.1 +41030 chr21 ENSEMBL gene 23079284 23079392 109.0 + 0 ENSG00000275469.1 miRNA MIR6130 3 +41031 chr21 HAVANA gene 23090028 23091831 1804.0 - 0 ENSG00000219368.3 processed_pseudogene ZNF299P 2 OTTHUMG00000078250.1 +41032 chr21 HAVANA gene 23101223 23103074 1368.0 + 0 ENSG00000231058.1 processed_pseudogene MSANTD2P1 1 OTTHUMG00000078255.1 pseudo_consens,overlapping_locus +41033 chr21 HAVANA gene 23065491 23131206 762.0 + 0 ENSG00000230972.1 lincRNA AP001116.1 2 OTTHUMG00000078253.1 ncRNA_host,overlapping_locus +41034 chr21 ENSEMBL gene 23281736 23281909 174.0 - 0 ENSG00000223078.1 snRNA RNU2-55P 3 +41035 chr21 HAVANA gene 23361104 23384861 1725.0 - 0 ENSG00000228592.1 lincRNA D21S2088E 1 OTTHUMG00000078246.1 +41036 chr21 HAVANA gene 23390258 23390996 739.0 + 0 ENSG00000223822.2 processed_pseudogene EEF1A1P1 1 OTTHUMG00000078248.1 pseudo_consens +41037 chr21 HAVANA gene 23407658 23409128 1352.0 - 0 ENSG00000237569.1 processed_pseudogene TUBAP 1 OTTHUMG00000078256.1 pseudo_consens +41038 chr21 ENSEMBL gene 23432181 23432282 102.0 - 0 ENSG00000199698.1 misc_RNA RF00019 3 +41039 chr21 HAVANA gene 23477641 23490724 861.0 + 0 ENSG00000227716.1 lincRNA AP000459.1 2 OTTHUMG00000078245.1 +41040 chr21 HAVANA gene 23888798 23890541 680.0 - 0 ENSG00000231986.1 lincRNA AP000474.1 1 OTTHUMG00000078274.1 +41041 chr21 HAVANA gene 23960905 23967273 778.0 - 0 ENSG00000235564.1 lincRNA AP000477.2 1 OTTHUMG00000078275.2 +41042 chr21 HAVANA gene 24043257 24050286 984.0 + 0 ENSG00000226996.5 lincRNA AP000477.1 2 OTTHUMG00000078273.1 +41043 chr21 HAVANA gene 24155170 24188342 693.0 - 0 ENSG00000224018.1 lincRNA AP000470.1 2 OTTHUMG00000078333.1 +41044 chr21 HAVANA gene 24304546 24321377 2071.0 - 0 ENSG00000224832.2 lincRNA LINC01689 2 OTTHUMG00000078332.2 +41045 chr21 HAVANA gene 24428740 24547942 4970.0 + 0 ENSG00000237484.5 lincRNA LINC01684 2 OTTHUMG00000078326.2 +41046 chr21 HAVANA gene 24886676 24902756 540.0 - 0 ENSG00000227090.1 lincRNA AP000402.1 2 OTTHUMG00000078329.1 +41047 chr21 HAVANA gene 24938431 24992817 614.0 - 0 ENSG00000230379.5 lincRNA AP000146.1 2 OTTHUMG00000078324.1 +41048 chr21 HAVANA gene 25031005 25031529 525.0 - 0 ENSG00000237444.1 processed_pseudogene AP001342.1 1 OTTHUMG00000156286.1 pseudo_consens +41049 chr21 HAVANA gene 24840550 25057746 2719.0 + 0 ENSG00000226983.2 lincRNA LINC01692 2 OTTHUMG00000078331.1 overlapping_locus +41050 chr21 HAVANA gene 25055535 25069906 479.0 + 0 ENSG00000244278.1 lincRNA AP000235.1 2 OTTHUMG00000078328.1 overlapping_locus +41051 chr21 ENSEMBL gene 25101132 25101415 284.0 + 0 ENSG00000274662.1 misc_RNA RN7SKP236 3 +41052 chr21 HAVANA gene 25095022 25103670 704.0 + 0 ENSG00000232512.6 lincRNA AP000233.2 1 OTTHUMG00000078330.1 ncRNA_host +41053 chr21 HAVANA gene 25127469 25135247 291.0 + 0 ENSG00000223870.1 lincRNA AP000233.1 2 OTTHUMG00000078327.1 +41054 chr21 ENSEMBL gene 25202207 25202315 109.0 + 0 ENSG00000238627.1 rRNA_pseudogene RNA5SP489 3 +41055 chr21 HAVANA gene 25169431 25333825 763.0 - 0 ENSG00000222042.1 lincRNA AP001341.1 1 OTTHUMG00000078325.3 +41056 chr21 HAVANA gene 25361821 25362431 611.0 + 0 ENSG00000213885.3 processed_pseudogene RPL13AP7 1 OTTHUMG00000078369.2 pseudo_consens +41057 chr21 HAVANA gene 25371827 25372043 217.0 + 0 ENSG00000279534.1 TEC AP001340.1 2 OTTHUMG00000172748.1 +41058 chr21 HAVANA gene 25385820 25431701 2027.0 - 0 ENSG00000185433.8 lincRNA LINC00158 2 OTTHUMG00000078368.2 +41059 chr21 HAVANA gene 25515473 25518338 1046.0 - 0 ENSG00000229962.1 lincRNA AP000221.1 2 OTTHUMG00000078370.1 +41060 chr21 ENSEMBL gene 25573980 25574044 65.0 + 0 ENSG00000283904.1 miRNA MIR155 3 +41061 chr21 HAVANA gene 25561909 25575168 1600.0 + 0 ENSG00000234883.5 lincRNA MIR155HG 2 OTTHUMG00000078367.1 ncRNA_host +41062 chr21 HAVANA gene 25582770 25583326 557.0 - 0 ENSG00000260583.1 antisense LINC00515 2 OTTHUMG00000172769.1 +41063 chr21 HAVANA gene 25585656 25607517 1199.0 - 0 ENSG00000154719.13 protein_coding MRPL39 2 OTTHUMG00000078371.4 +41064 chr21 HAVANA gene 25643489 25644216 728.0 + 0 ENSG00000237731.1 processed_pseudogene RNGTTP1 1 OTTHUMG00000155486.1 pseudo_consens,overlapping_locus +41065 chr21 HAVANA gene 25692180 25692554 375.0 + 0 ENSG00000227054.1 processed_pseudogene FDX1P2 1 OTTHUMG00000078440.1 pseudo_consens,overlapping_locus +41066 chr21 HAVANA gene 25639272 25717562 5933.0 + 0 ENSG00000154721.14 protein_coding JAM2 2 OTTHUMG00000078441.3 overlapping_locus +41067 chr21 HAVANA gene 25716503 25735673 2043.0 - 0 ENSG00000154723.12 protein_coding ATP5PF 1 OTTHUMG00000078442.2 +41068 chr21 HAVANA gene 25762938 25763333 396.0 - 0 ENSG00000235514.1 processed_pseudogene LLPHP2 1 OTTHUMG00000078439.1 pseudo_consens +41069 chr21 HAVANA gene 25734570 25772460 5429.0 + 0 ENSG00000154727.10 protein_coding GABPA 1 OTTHUMG00000078443.2 +41070 chr21 HAVANA gene 25928754 25942686 3201.0 + 0 ENSG00000233783.7 processed_transcript AP001442.1 2 OTTHUMG00000078483.5 +41071 chr21 ENSEMBL gene 25943044 25943145 102.0 - 0 ENSG00000251972.1 snRNA RNU6-123P 3 +41072 chr21 HAVANA gene 25880550 26171128 6316.0 - 0 ENSG00000142192.20 protein_coding APP 1 OTTHUMG00000078438.10 ncRNA_host +41073 chr21 HAVANA gene 26158091 26175824 392.0 + 0 ENSG00000224541.1 antisense AP001439.1 2 OTTHUMG00000078481.1 overlapping_locus +41074 chr21 ENSEMBL gene 26190707 26190813 107.0 + 0 ENSG00000206802.1 snRNA RNU6-926P 3 +41075 chr21 HAVANA gene 26170871 26217381 2044.0 + 0 ENSG00000273492.5 lincRNA AP000229.1 2 OTTHUMG00000186038.1 ncRNA_host,overlapping_locus +41076 chr21 HAVANA gene 26349780 26350634 516.0 - 0 ENSG00000229025.1 lincRNA AP001595.1 1 OTTHUMG00000078482.1 +41077 chr21 HAVANA gene 26459903 26460214 312.0 - 0 ENSG00000273115.1 lincRNA AP001596.2 2 OTTHUMG00000186039.1 +41078 chr21 HAVANA gene 26378552 26471698 2247.0 + 0 ENSG00000232692.1 antisense AP001596.1 2 OTTHUMG00000078661.2 overlapping_locus +41079 chr21 HAVANA gene 26393635 26569252 3713.0 + 0 ENSG00000197934.8 antisense CYYR1-AS1 2 OTTHUMG00000078660.1 overlapping_locus +41080 chr21 HAVANA gene 26466209 26573284 3266.0 - 0 ENSG00000166265.11 protein_coding CYYR1 1 OTTHUMG00000078689.2 +41081 chr21 HAVANA gene 26835747 26845409 7063.0 - 0 ENSG00000154734.14 protein_coding ADAMTS1 2 OTTHUMG00000078688.4 +41082 chr21 HAVANA gene 26889376 26939742 361.0 + 0 ENSG00000223563.1 antisense AP001599.1 2 OTTHUMG00000078687.1 +41083 chr21 ENSEMBL gene 26953961 26954043 83.0 + 0 ENSG00000266133.1 miRNA MIR4759 3 +41084 chr21 HAVANA gene 26917912 26966513 9056.0 - 0 ENSG00000154736.5 protein_coding ADAMTS5 2 OTTHUMG00000078686.2 +41085 chr21 HAVANA gene 27143344 27143949 606.0 - 0 ENSG00000215326.3 processed_pseudogene GPX1P2 1 OTTHUMG00000078697.1 pseudo_consens +41086 chr21 HAVANA gene 27367014 27367947 934.0 - 0 ENSG00000233300.1 processed_pseudogene EIF4A1P1 1 OTTHUMG00000078696.1 pseudo_consens,overlapping_locus +41087 chr21 HAVANA gene 27361164 27395787 954.0 + 0 ENSG00000236332.1 lincRNA AP001604.1 2 OTTHUMG00000078698.1 +41088 chr21 HAVANA gene 27420380 27421023 644.0 - 0 ENSG00000217026.3 processed_pseudogene RPL10P1 1 OTTHUMG00000078695.1 pseudo_consens,overlapping_locus +41089 chr21 HAVANA gene 27358885 27448579 2603.0 - 0 ENSG00000231236.2 lincRNA AP001605.1 2 OTTHUMG00000078699.2 overlapping_locus +41090 chr21 HAVANA gene 27492118 27492261 144.0 + 0 ENSG00000219592.2 processed_pseudogene NCSTNP1 2 OTTHUMG00000078705.2 +41091 chr21 HAVANA gene 27638693 27653491 468.0 + 0 ENSG00000234052.1 lincRNA LINC01673 1 OTTHUMG00000078707.1 +41092 chr21 HAVANA gene 27722379 27751233 611.0 + 0 ENSG00000225298.5 lincRNA LINC00113 2 OTTHUMG00000078708.1 +41093 chr21 HAVANA gene 27954922 27985295 572.0 + 0 ENSG00000234083.1 lincRNA AJ006995.1 2 OTTHUMG00000074159.1 +41094 chr21 HAVANA gene 28013363 28023233 607.0 + 0 ENSG00000178457.3 lincRNA LINC00314 2 OTTHUMG00000074158.1 +41095 chr21 HAVANA gene 28048404 28137611 4053.0 + 0 ENSG00000232079.6 processed_transcript LINC01697 2 OTTHUMG00000078709.4 +41096 chr21 HAVANA gene 28116094 28228667 4753.0 - 0 ENSG00000236532.5 lincRNA LINC01695 2 OTTHUMG00000078706.1 +41097 chr21 HAVANA gene 28539318 28540355 870.0 + 0 ENSG00000226935.6 lincRNA LINC00161 2 OTTHUMG00000078748.1 +41098 chr21 HAVANA gene 28439346 28674848 6532.0 - 0 ENSG00000232855.6 lincRNA AF165147.1 2 OTTHUMG00000078747.3 +41099 chr21 ENSEMBL gene 28743208 28743291 84.0 + 0 ENSG00000283300.1 snRNA RF00026 3 +41100 chr21 HAVANA gene 28872191 28885371 4865.0 - 0 ENSG00000156239.11 protein_coding N6AMT1 2 OTTHUMG00000078750.4 +41101 chr21 HAVANA gene 28887280 28889272 1686.0 - 0 ENSG00000215005.2 processed_pseudogene HSPD1P7 1 OTTHUMG00000078751.2 pseudo_consens +41102 chr21 HAVANA gene 28901779 28903697 1041.0 - 0 ENSG00000215317.2 processed_pseudogene THUMPD1P1 1 OTTHUMG00000078749.1 pseudo_consens +41103 chr21 HAVANA gene 28928144 28992956 8876.0 - 0 ENSG00000198862.13 protein_coding LTN1 1 OTTHUMG00000078803.4 +41104 chr21 HAVANA gene 28997613 28998033 421.0 - 0 ENSG00000176054.6 processed_pseudogene RPL23P2 1 OTTHUMG00000078804.1 pseudo_consens +41105 chr21 HAVANA gene 29004384 29019378 3395.0 - 0 ENSG00000156253.6 protein_coding RWDD2B 2 OTTHUMG00000078805.2 +41106 chr21 HAVANA gene 29024255 29024890 636.0 - 0 ENSG00000273254.1 antisense AF129075.2 2 OTTHUMG00000186465.1 +41107 chr21 HAVANA gene 29024629 29054488 5694.0 + 0 ENSG00000156256.14 protein_coding USP16 2 OTTHUMG00000078802.2 +41108 chr21 HAVANA gene 29058073 29060095 794.0 - 0 ENSG00000231125.2 sense_intronic AF129075.1 2 OTTHUMG00000078807.2 overlapping_locus +41109 chr21 HAVANA gene 29055805 29073797 3341.0 - 0 ENSG00000156261.12 protein_coding CCT8 2 OTTHUMG00000044595.5 overlapping_locus +41110 chr21 HAVANA gene 29127701 29128188 488.0 - 0 ENSG00000232687.1 processed_pseudogene RPL12P9 1 OTTHUMG00000155485.2 pseudo_consens +41111 chr21 ENSEMBL gene 29139283 29139384 102.0 - 0 ENSG00000201984.1 misc_RNA RF00019 3 +41112 chr21 HAVANA gene 29077471 29175889 4497.0 + 0 ENSG00000156265.15 protein_coding MAP3K7CL 2 OTTHUMG00000078806.7 +41113 chr21 ENSEMBL gene 29180425 29180639 215.0 - 0 ENSG00000212479.2 snoRNA RF00012 3 +41114 chr21 HAVANA gene 29182027 29187795 327.0 - 0 ENSG00000224649.1 antisense AF124730.1 2 OTTHUMG00000078877.1 +41115 chr21 HAVANA gene 29222321 29223257 937.0 + 0 ENSG00000236056.1 processed_pseudogene GAPDHP14 1 OTTHUMG00000078875.1 pseudo_consens,overlapping_locus +41116 chr21 HAVANA gene 29193480 29288205 1087.0 + 0 ENSG00000215533.8 sense_overlapping LINC00189 2 OTTHUMG00000078876.1 overlapping_locus +41117 chr21 HAVANA gene 29359002 29359453 452.0 + 0 ENSG00000273017.1 sense_intronic AP000240.1 2 OTTHUMG00000186466.1 overlapping_locus +41118 chr21 HAVANA gene 29351634 29361894 821.0 + 0 ENSG00000248476.1 sense_intronic BACH1-IT1 2 OTTHUMG00000078881.1 overlapping_locus +41119 chr21 HAVANA gene 29370497 29373709 1291.0 + 0 ENSG00000228817.4 lincRNA BACH1-IT2 1 OTTHUMG00000078880.4 overlapping_locus +41120 chr21 HAVANA gene 29370019 29376339 879.0 - 0 ENSG00000232118.2 lincRNA BACH1-AS1 2 OTTHUMG00000081874.3 +41121 chr21 HAVANA gene 29496047 29500386 406.0 + 0 ENSG00000234293.1 sense_intronic BACH1-IT3 2 OTTHUMG00000078874.1 overlapping_locus +41122 chr21 HAVANA gene 29194071 29630751 7717.0 + 0 ENSG00000156273.15 protein_coding BACH1 2 OTTHUMG00000078878.9 overlapping_locus +41123 chr21 HAVANA gene 29657406 29657831 426.0 + 0 ENSG00000273464.1 antisense AP000238.1 2 OTTHUMG00000186469.1 +41124 chr21 HAVANA gene 29748175 29764002 1330.0 + 0 ENSG00000174680.9 antisense GRIK1-AS1 2 OTTHUMG00000081875.1 +41125 chr21 HAVANA gene 29536933 29940033 4242.0 - 0 ENSG00000171189.17 protein_coding GRIK1 2 OTTHUMG00000078879.1 +41126 chr21 HAVANA gene 30089717 30097836 444.0 + 0 ENSG00000259981.1 lincRNA AF096876.1 2 OTTHUMG00000172753.1 +41127 chr21 HAVANA gene 30165564 30166756 1193.0 - 0 ENSG00000156282.4 protein_coding CLDN17 2 OTTHUMG00000081873.1 +41128 chr21 HAVANA gene 30209151 30211783 424.0 - 0 ENSG00000227342.1 lincRNA LINC00307 2 OTTHUMG00000081871.1 +41129 chr21 HAVANA gene 30214006 30216073 2068.0 - 0 ENSG00000156284.5 protein_coding CLDN8 2 OTTHUMG00000081872.1 +41130 chr21 HAVANA gene 30263380 30263881 502.0 - 0 ENSG00000225267.1 processed_pseudogene RPL8P2 1 OTTHUMG00000081870.1 pseudo_consens +41131 chr21 HAVANA gene 30281309 30282958 1650.0 - 0 ENSG00000188694.5 protein_coding KRTAP24-1 2 OTTHUMG00000125483.3 +41132 chr21 HAVANA gene 30289145 30289514 370.0 - 0 ENSG00000232263.1 protein_coding KRTAP25-1 2 OTTHUMG00000125482.1 +41133 chr21 HAVANA gene 30319124 30320316 1193.0 - 0 ENSG00000197683.4 protein_coding KRTAP26-1 2 OTTHUMG00000057766.1 +41134 chr21 HAVANA gene 30337013 30337694 682.0 - 0 ENSG00000206107.2 protein_coding KRTAP27-1 1 OTTHUMG00000059577.3 +41135 chr21 HAVANA gene 30348399 30348609 211.0 - 0 ENSG00000186980.6 protein_coding KRTAP23-1 2 OTTHUMG00000057792.4 +41136 chr21 HAVANA gene 30356515 30356885 371.0 - 0 ENSG00000250973.1 unprocessed_pseudogene KRTAP13-6P 2 OTTHUMG00000057780.2 +41137 chr21 HAVANA gene 30371391 30372257 867.0 - 0 ENSG00000182816.8 protein_coding KRTAP13-2 2 OTTHUMG00000057793.2 +41138 chr21 ENSEMBL gene 30375294 30375378 85.0 - 0 ENSG00000265007.1 miRNA MIR4327 3 +41139 chr21 HAVANA gene 30396074 30396822 749.0 + 0 ENSG00000198390.4 protein_coding KRTAP13-1 2 OTTHUMG00000057800.3 +41140 chr21 HAVANA gene 30425265 30425968 704.0 - 0 ENSG00000240432.3 protein_coding KRTAP13-3 2 OTTHUMG00000057776.2 +41141 chr21 HAVANA gene 30430230 30431026 797.0 + 0 ENSG00000186971.3 protein_coding KRTAP13-4 2 OTTHUMG00000057770.1 +41142 chr21 HAVANA gene 30436466 30436964 499.0 - 0 ENSG00000233640.2 unprocessed_pseudogene KRTAP13-5P 2 OTTHUMG00000057795.2 +41143 chr21 HAVANA gene 30440275 30440945 671.0 + 0 ENSG00000186970.4 protein_coding KRTAP15-1 2 OTTHUMG00000057784.1 +41144 chr21 HAVANA gene 30479699 30480344 646.0 - 0 ENSG00000184351.7 protein_coding KRTAP19-1 2 OTTHUMG00000057768.2 +41145 chr21 HAVANA gene 30487057 30487436 380.0 - 0 ENSG00000186965.4 protein_coding KRTAP19-2 2 OTTHUMG00000057772.3 +41146 chr21 HAVANA gene 30491464 30491985 522.0 - 0 ENSG00000244025.4 protein_coding KRTAP19-3 2 OTTHUMG00000057782.2 +41147 chr21 HAVANA gene 30496824 30497133 310.0 - 0 ENSG00000186967.6 protein_coding KRTAP19-4 2 OTTHUMG00000057767.2 +41148 chr21 HAVANA gene 30501657 30502117 461.0 - 0 ENSG00000186977.2 protein_coding KRTAP19-5 2 OTTHUMG00000057774.2 +41149 chr21 HAVANA gene 30510307 30510497 191.0 - 0 ENSG00000237841.1 unprocessed_pseudogene KRTAP19-9P 2 OTTHUMG00000057789.2 +41150 chr21 HAVANA gene 30514613 30514799 187.0 - 0 ENSG00000235312.1 unprocessed_pseudogene KRTAP19-10P 2 OTTHUMG00000057775.2 +41151 chr21 HAVANA gene 30526546 30526701 156.0 - 0 ENSG00000218125.1 unprocessed_pseudogene AP000567.1 2 OTTHUMG00000057783.2 +41152 chr21 HAVANA gene 30537278 30537381 104.0 - 0 ENSG00000236612.1 unprocessed_pseudogene KRTAP19-11P 2 OTTHUMG00000057799.1 +41153 chr21 HAVANA gene 30541535 30541864 330.0 - 0 ENSG00000186925.6 protein_coding KRTAP19-6 2 OTTHUMG00000057779.4 +41154 chr21 HAVANA gene 30560875 30561314 440.0 - 0 ENSG00000244362.3 protein_coding KRTAP19-7 2 OTTHUMG00000057785.2 +41155 chr21 HAVANA gene 30590105 30590397 293.0 - 0 ENSG00000206106.2 protein_coding KRTAP22-2 2 OTTHUMG00000065630.2 +41156 chr21 HAVANA gene 30592440 30593075 636.0 + 0 ENSG00000212938.3 protein_coding KRTAP6-3 2 OTTHUMG00000057791.3 +41157 chr21 HAVANA gene 30598590 30598902 313.0 - 0 ENSG00000186930.4 protein_coding KRTAP6-2 2 OTTHUMG00000057794.3 +41158 chr21 HAVANA gene 30601087 30601382 296.0 + 0 ENSG00000186924.3 protein_coding KRTAP22-1 2 OTTHUMG00000057778.2 +41159 chr21 HAVANA gene 30613431 30613930 500.0 - 0 ENSG00000184724.5 protein_coding KRTAP6-1 2 OTTHUMG00000057788.2 +41160 chr21 HAVANA gene 30616425 30616699 275.0 + 0 ENSG00000244624.3 protein_coding KRTAP20-1 2 OTTHUMG00000057801.3 +41161 chr21 HAVANA gene 30620627 30620850 224.0 + 0 ENSG00000206105.2 protein_coding KRTAP20-4 1 OTTHUMG00000125519.1 +41162 chr21 HAVANA gene 30635236 30635619 384.0 + 0 ENSG00000184032.2 protein_coding KRTAP20-2 2 OTTHUMG00000057786.3 +41163 chr21 HAVANA gene 30642864 30643136 273.0 + 0 ENSG00000206104.2 protein_coding KRTAP20-3 2 OTTHUMG00000057798.2 +41164 chr21 HAVANA gene 30718525 30718777 253.0 - 0 ENSG00000231068.1 protein_coding KRTAP21-3 2 OTTHUMG00000125533.1 +41165 chr21 HAVANA gene 30741780 30742595 816.0 - 0 ENSG00000236400.1 unprocessed_pseudogene KRTAP21-4P 2 OTTHUMG00000057790.1 +41166 chr21 HAVANA gene 30746794 30747233 440.0 - 0 ENSG00000187026.2 protein_coding KRTAP21-2 2 OTTHUMG00000057769.2 +41167 chr21 HAVANA gene 30754830 30755428 599.0 - 0 ENSG00000187005.4 protein_coding KRTAP21-1 2 OTTHUMG00000057777.2 +41168 chr21 HAVANA gene 30762682 30762882 201.0 - 0 ENSG00000238257.1 unprocessed_pseudogene AP000244.1 2 OTTHUMG00000084862.1 +41169 chr21 HAVANA gene 30802242 30802427 186.0 - 0 ENSG00000233036.1 unprocessed_pseudogene KRTAP8-2P 2 OTTHUMG00000057797.2 +41170 chr21 HAVANA gene 30806932 30807119 188.0 - 0 ENSG00000227840.1 unprocessed_pseudogene KRTAP8-3P 2 OTTHUMG00000057781.2 +41171 chr21 HAVANA gene 30812697 30813252 556.0 - 0 ENSG00000183640.5 protein_coding KRTAP8-1 2 OTTHUMG00000057771.1 +41172 chr21 HAVANA gene 30829039 30829759 721.0 - 0 ENSG00000274749.1 protein_coding KRTAP7-1 2 OTTHUMG00000188305.1 +41173 chr21 HAVANA gene 30880644 30881555 912.0 - 0 ENSG00000182591.5 protein_coding KRTAP11-1 2 OTTHUMG00000057773.1 +41174 chr21 HAVANA gene 31038159 31038476 318.0 - 0 ENSG00000206102.2 protein_coding KRTAP19-8 1 OTTHUMG00000057787.3 +41175 chr21 HAVANA gene 31060600 31063168 2259.0 - 0 ENSG00000228941.1 processed_pseudogene UBE3AP2 1 OTTHUMG00000084863.1 pseudo_consens +41176 chr21 HAVANA gene 31452466 31453223 758.0 + 0 ENSG00000237325.3 processed_pseudogene AP000563.1 1 OTTHUMG00000084871.2 pseudo_consens +41177 chr21 HAVANA gene 31118416 31559977 9216.0 - 0 ENSG00000156299.13 protein_coding TIAM1 1 OTTHUMG00000084869.6 +41178 chr21 HAVANA gene 31559245 31560487 822.0 + 0 ENSG00000237594.2 lincRNA AP000251.1 2 OTTHUMG00000186474.1 +41179 chr21 HAVANA gene 31627127 31628600 1474.0 - 0 ENSG00000230870.2 processed_pseudogene FBXW11P1 1 OTTHUMG00000084868.1 pseudo_consens +41180 chr21 HAVANA gene 31653593 31659500 2233.0 - 0 ENSG00000234509.1 lincRNA AP000253.1 1 OTTHUMG00000084879.1 +41181 chr21 ENSEMBL gene 31664306 31664482 177.0 + 0 ENSG00000238390.1 snoRNA RF01241 3 +41182 chr21 HAVANA gene 31666728 31667247 520.0 - 0 ENSG00000273271.1 antisense AP000254.1 2 OTTHUMG00000186467.1 +41183 chr21 HAVANA gene 31659622 31668931 2019.0 + 0 ENSG00000142168.14 protein_coding SOD1 2 OTTHUMG00000084878.2 ncRNA_host +41184 chr21 HAVANA gene 31706555 31706864 310.0 + 0 ENSG00000229046.1 processed_pseudogene HMGN1P2 1 OTTHUMG00000084901.2 pseudo_consens +41185 chr21 HAVANA gene 31671033 31732075 5901.0 - 0 ENSG00000156304.14 protein_coding SCAF4 2 OTTHUMG00000084903.5 +41186 chr21 HAVANA gene 31735732 31736407 676.0 + 0 ENSG00000273091.1 lincRNA AP000255.1 2 OTTHUMG00000186475.1 +41187 chr21 HAVANA gene 31840341 31840858 518.0 + 0 ENSG00000234107.1 processed_pseudogene TPT1P1 1 OTTHUMG00000084902.1 pseudo_consens +41188 chr21 HAVANA gene 32020966 32021782 616.0 - 0 ENSG00000237138.1 antisense HUNK-AS1 2 OTTHUMG00000085305.1 +41189 chr21 HAVANA gene 31873315 32044633 8294.0 + 0 ENSG00000142149.8 protein_coding HUNK 2 OTTHUMG00000085019.3 +41190 chr21 HAVANA gene 32080316 32197813 572.0 - 0 ENSG00000230323.5 lincRNA LINC00159 2 OTTHUMG00000085307.1 +41191 chr21 HAVANA gene 32259804 32261585 1782.0 - 0 ENSG00000261610.1 lincRNA AP000265.1 2 OTTHUMG00000172750.1 +41192 chr21 HAVANA gene 32268219 32279069 1723.0 - 0 ENSG00000159055.3 protein_coding MIS18A 2 OTTHUMG00000085308.1 +41193 chr21 HAVANA gene 32277863 32280988 769.0 + 0 ENSG00000227256.1 antisense MIS18A-AS1 2 OTTHUMG00000085306.1 +41194 chr21 HAVANA gene 32306464 32308737 582.0 - 0 ENSG00000232623.1 antisense AP000266.1 2 OTTHUMG00000085304.1 +41195 chr21 HAVANA gene 32291813 32314784 1346.0 + 0 ENSG00000170262.12 protein_coding MRAP 2 OTTHUMG00000085309.1 +41196 chr21 ENSEMBL gene 32377187 32377322 136.0 - 0 ENSG00000200792.1 snoRNA SNORA80A 3 +41197 chr21 HAVANA gene 32311018 32393026 11461.0 - 0 ENSG00000142207.6 protein_coding URB1 1 OTTHUMG00000064919.3 ncRNA_host +41198 chr21 HAVANA gene 32393130 32393960 831.0 + 0 ENSG00000256073.3 lincRNA URB1-AS1 1 OTTHUMG00000064921.2 +41199 chr21 HAVANA gene 32496812 32497311 500.0 + 0 ENSG00000229007.1 processed_pseudogene EXOSC3P1 1 OTTHUMG00000064920.1 pseudo_consens,overlapping_locus +41200 chr21 HAVANA gene 32412006 32515397 4353.0 + 0 ENSG00000166979.12 protein_coding EVA1C 2 OTTHUMG00000064922.5 overlapping_locus +41201 chr21 ENSEMBL gene 32538299 32538434 136.0 + 0 ENSG00000252045.1 snoRNA RF00438 3 +41202 chr21 ENSEMBL gene 32563075 32563210 136.0 + 0 ENSG00000252950.1 rRNA_pseudogene RNA5SP490 3 +41203 chr21 HAVANA gene 32572238 32575881 1778.0 - 0 ENSG00000186842.4 3prime_overlapping_ncRNA LINC00846 2 OTTHUMG00000190260.1 +41204 chr21 HAVANA gene 32574841 32587373 3026.0 - 0 ENSG00000242220.6 protein_coding TCP10L 1 OTTHUMG00000064901.8 overlapping_locus +41205 chr21 HAVANA gene 32578822 32612281 1026.0 - 0 ENSG00000265590.9 protein_coding AP000275.2 2 OTTHUMG00000064928.9 overlapping_locus +41206 chr21 HAVANA gene 32592079 32612866 3353.0 - 0 ENSG00000159079.18 protein_coding CFAP298 1 OTTHUMG00000179510.2 overlapping_locus +41207 chr21 HAVANA gene 32621084 32622083 1000.0 + 0 ENSG00000228433.2 unprocessed_pseudogene OR7E23P 1 OTTHUMG00000064927.2 pseudo_consens +41208 chr21 HAVANA gene 32624416 32625096 390.0 - 0 ENSG00000238220.1 processed_pseudogene AP000275.1 2 OTTHUMG00000128947.1 +41209 chr21 HAVANA gene 32628759 32728048 8070.0 - 0 ENSG00000159082.17 protein_coding SYNJ1 1 OTTHUMG00000064926.14 +41210 chr21 HAVANA gene 32728115 32743122 4046.0 + 0 ENSG00000238197.5 antisense PAXBP1-AS1 2 OTTHUMG00000064979.3 +41211 chr21 HAVANA gene 32733899 32771858 7212.0 - 0 ENSG00000159086.14 protein_coding PAXBP1 1 OTTHUMG00000064980.8 +41212 chr21 HAVANA gene 32790673 32791504 832.0 - 0 ENSG00000279690.1 TEC AP000280.1 2 OTTHUMG00000064991.6 +41213 chr21 HAVANA gene 32793564 32813743 1230.0 - 0 ENSG00000205929.10 protein_coding C21orf62 1 OTTHUMG00000163477.2 +41214 chr21 HAVANA gene 32841496 32841811 316.0 - 0 ENSG00000224427.1 processed_pseudogene AP000281.1 2 OTTHUMG00000064933.1 +41215 chr21 ENSEMBL gene 32841861 32841995 135.0 - 0 ENSG00000207098.1 snoRNA RF00156 3 +41216 chr21 HAVANA gene 32844367 32849934 384.0 - 0 ENSG00000232360.1 antisense AP000281.2 2 OTTHUMG00000064934.1 +41217 chr21 HAVANA gene 32772100 32893735 3504.0 + 0 ENSG00000205930.8 antisense C21orf62-AS1 1 OTTHUMG00000064992.6 +41218 chr21 HAVANA gene 32958888 32960566 576.0 + 0 ENSG00000228961.1 lincRNA LINC01690 2 OTTHUMG00000065034.1 +41219 chr21 HAVANA gene 33025845 33029196 3352.0 + 0 ENSG00000205927.4 protein_coding OLIG2 2 OTTHUMG00000065032.5 +41220 chr21 HAVANA gene 33057829 33064983 753.0 + 0 ENSG00000232539.1 lincRNA LINC00945 2 OTTHUMG00000065060.1 +41221 chr21 HAVANA gene 32913649 33071104 682.0 - 0 ENSG00000227757.3 antisense AP000282.1 2 OTTHUMG00000065033.2 +41222 chr21 HAVANA gene 33070144 33072420 2277.0 + 0 ENSG00000184221.12 protein_coding OLIG1 2 OTTHUMG00000065064.2 +41223 chr21 HAVANA gene 33111699 33123703 1361.0 - 0 ENSG00000226527.1 lincRNA AP000289.1 1 OTTHUMG00000065062.1 +41224 chr21 HAVANA gene 33156632 33159110 449.0 + 0 ENSG00000226433.1 antisense AP000290.1 1 OTTHUMG00000065063.1 +41225 chr21 HAVANA gene 33165470 33170649 696.0 - 0 ENSG00000229086.4 lincRNA LINC01548 2 OTTHUMG00000065061.4 +41226 chr21 HAVANA gene 33229901 33265675 4614.0 + 0 ENSG00000159110.19 protein_coding IFNAR2 2 OTTHUMG00000065127.39 overlapping_locus +41227 chr21 HAVANA gene 33263873 33266260 2228.0 - 0 ENSG00000223799.1 antisense IL10RB-DT 2 OTTHUMG00000065125.1 +41228 chr21 HAVANA gene 33229901 33297160 3770.0 + 0 ENSG00000249624.9 protein_coding AP000295.1 2 OTTHUMG00000162031.4 overlapping_locus +41229 chr21 HAVANA gene 33266358 33310187 4548.0 + 0 ENSG00000243646.9 protein_coding IL10RB 2 OTTHUMG00000065128.8 overlapping_locus +41230 chr21 HAVANA gene 33334571 33335096 526.0 + 0 ENSG00000226501.2 processed_pseudogene USF1P1 1 OTTHUMG00000065124.1 pseudo_consens,overlapping_locus +41231 chr21 HAVANA gene 33324477 33359862 6301.0 + 0 ENSG00000142166.12 protein_coding IFNAR1 2 OTTHUMG00000065126.9 overlapping_locus +41232 chr21 HAVANA gene 33402896 33479348 2960.0 + 0 ENSG00000159128.14 protein_coding IFNGR2 2 OTTHUMG00000065188.5 +41233 chr21 HAVANA gene 33432485 33480011 4495.0 - 0 ENSG00000142188.16 protein_coding TMEM50B 2 OTTHUMG00000065286.12 +41234 chr21 HAVANA gene 33481580 33482195 616.0 - 0 ENSG00000215088.3 processed_pseudogene RPS5P3 1 OTTHUMG00000065532.1 pseudo_consens +41235 chr21 HAVANA gene 33482499 33484258 666.0 - 0 ENSG00000231355.1 antisense AP000302.1 2 OTTHUMG00000065530.1 +41236 chr21 HAVANA gene 33485530 33491720 2484.0 - 0 ENSG00000177692.11 protein_coding DNAJC28 2 OTTHUMG00000065531.6 +41237 chr21 HAVANA gene 33518610 33519108 499.0 - 0 ENSG00000233956.1 processed_pseudogene BTF3P6 1 OTTHUMG00000065805.2 pseudo_consens,overlapping_locus +41238 chr21 HAVANA gene 33503931 33543491 7751.0 - 0 ENSG00000159131.16 protein_coding GART 2 OTTHUMG00000065628.25 overlapping_locus +41239 chr21 ENSEMBL gene 33550662 33550728 67.0 + 0 ENSG00000284448.1 miRNA MIR6501 3 +41240 chr21 HAVANA gene 33542618 33577481 13172.0 + 0 ENSG00000159140.19 protein_coding SON 1 OTTHUMG00000065806.6 ncRNA_host +41241 chr21 HAVANA gene 33559542 33588708 3513.0 - 0 ENSG00000159147.17 protein_coding DONSON 1 OTTHUMG00000065904.9 overlapping_locus +41242 chr21 HAVANA gene 33589341 33643926 6177.0 - 0 ENSG00000205758.11 protein_coding CRYZL1 1 OTTHUMG00000065954.13 overlapping_locus +41243 chr21 HAVANA gene 33642400 33899861 21748.0 + 0 ENSG00000205726.14 protein_coding ITSN1 1 OTTHUMG00000065284.33 +41244 chr21 HAVANA gene 33903453 33915980 3336.0 - 0 ENSG00000241837.6 protein_coding ATP5PO 1 OTTHUMG00000065186.11 overlapping_locus +41245 chr21 ENSEMBL gene 33918995 33919338 344.0 - 0 ENSG00000244294.3 misc_RNA RN7SL740P 3 +41246 chr21 HAVANA gene 33584687 33931607 1078.0 - 0 ENSG00000249209.2 protein_coding AP000311.1 2 OTTHUMG00000162259.3 ncRNA_host,overlapping_locus +41247 chr21 HAVANA gene 33967101 33968573 591.0 - 0 ENSG00000273102.1 lincRNA AP000569.1 2 OTTHUMG00000186318.1 +41248 chr21 HAVANA gene 33915534 33977691 14336.0 + 0 ENSG00000237945.7 antisense LINC00649 1 OTTHUMG00000065819.10 +41249 chr21 HAVANA gene 34073570 34106262 11576.0 + 0 ENSG00000198743.6 protein_coding SLC5A3 2 OTTHUMG00000065821.3 overlapping_locus,retrogene +41250 chr21 HAVANA gene 34135432 34136071 640.0 - 0 ENSG00000224598.1 processed_pseudogene RPS5P2 1 OTTHUMG00000065822.1 pseudo_consens +41251 chr21 HAVANA gene 34073224 34143034 4299.0 + 0 ENSG00000243927.5 protein_coding MRPS6 2 OTTHUMG00000065820.2 overlapping_locus +41252 chr21 HAVANA gene 34157724 34190244 3280.0 + 0 ENSG00000227456.7 lincRNA LINC00310 2 OTTHUMG00000086190.8 overlapping_locus +41253 chr21 HAVANA gene 34205055 34325034 805.0 + 0 ENSG00000214955.5 lincRNA AP000317.1 2 OTTHUMG00000086188.1 overlapping_locus +41254 chr21 HAVANA gene 34073592 34360033 641.0 + 0 ENSG00000272657.1 processed_transcript AP000317.2 2 OTTHUMG00000185873.1 overlapping_locus +41255 chr21 HAVANA gene 34364024 34371389 1051.0 + 0 ENSG00000159197.3 protein_coding KCNE2 2 OTTHUMG00000086189.2 +41256 chr21 HAVANA gene 34370802 34375348 471.0 - 0 ENSG00000225555.1 antisense AP000320.1 2 OTTHUMG00000086192.1 +41257 chr21 HAVANA gene 34400317 34401072 756.0 - 0 ENSG00000222018.1 protein_coding FAM243A 2 OTTHUMG00000154291.2 +41258 chr21 HAVANA gene 34375480 34407866 4200.0 + 0 ENSG00000205670.10 protein_coding SMIM11A 1 OTTHUMG00000086193.4 +41259 chr21 HAVANA gene 34412200 34412587 388.0 + 0 ENSG00000273104.1 lincRNA AP000322.2 2 OTTHUMG00000186481.1 +41260 chr21 HAVANA gene 34418715 34423966 1050.0 - 0 ENSG00000243627.4 protein_coding SMIM34A 1 OTTHUMG00000153030.3 +41261 chr21 HAVANA gene 34425508 34426017 510.0 + 0 ENSG00000272958.1 lincRNA AP000322.1 2 OTTHUMG00000186482.1 +41262 chr21 ENSEMBL gene 34456110 34456237 128.0 - 0 ENSG00000221398.1 snoRNA RF00614 3 +41263 chr21 HAVANA gene 34446688 34512275 5713.0 - 0 ENSG00000180509.11 protein_coding KCNE1 2 OTTHUMG00000086236.4 ncRNA_host +41264 chr21 HAVANA gene 34513142 34615142 6990.0 - 0 ENSG00000159200.17 protein_coding RCAN1 1 OTTHUMG00000086235.4 +41265 chr21 HAVANA gene 34669389 34718227 3860.0 + 0 ENSG00000159212.12 protein_coding CLIC6 2 OTTHUMG00000086237.1 +41266 chr21 HAVANA gene 34723807 34737181 693.0 - 0 ENSG00000230978.1 lincRNA LINC00160 2 OTTHUMG00000086234.2 +41267 chr21 HAVANA gene 34745757 34784886 3219.0 + 0 ENSG00000234380.1 antisense LINC01426 2 OTTHUMG00000086233.2 +41268 chr21 HAVANA gene 35136638 35139222 698.0 + 0 ENSG00000234703.1 lincRNA AF015262.1 2 OTTHUMG00000086303.1 +41269 chr21 HAVANA gene 35472095 35472432 338.0 - 0 ENSG00000223671.2 processed_pseudogene RPL34P3 1 OTTHUMG00000086465.2 pseudo_consens,overlapping_locus +41270 chr21 HAVANA gene 35599732 35600022 291.0 - 0 ENSG00000231300.1 processed_pseudogene EZH2P1 1 OTTHUMG00000086464.1 pseudo_consens,overlapping_locus +41271 chr21 ENSEMBL gene 35720715 35720808 94.0 + 0 ENSG00000211590.1 miRNA MIR802 3 +41272 chr21 HAVANA gene 35724747 35725100 354.0 - 0 ENSG00000229761.1 processed_pseudogene RPS20P1 1 OTTHUMG00000086461.1 pseudo_consens,overlapping_locus +41273 chr21 HAVANA gene 35713139 35732942 349.0 - 0 ENSG00000230794.1 lincRNA AF015720.1 2 OTTHUMG00000086462.1 overlapping_locus +41274 chr21 HAVANA gene 35887195 35887807 613.0 + 0 ENSG00000234008.5 processed_pseudogene PPP1R2P2 1 OTTHUMG00000086466.1 pseudo_consens +41275 chr21 HAVANA gene 34787801 36004667 15574.0 - 0 ENSG00000159216.18 protein_coding RUNX1 1 OTTHUMG00000086299.10 overlapping_locus +41276 chr21 HAVANA gene 36005338 36007838 1048.0 + 0 ENSG00000231106.2 lincRNA LINC01436 1 OTTHUMG00000086463.2 +41277 chr21 HAVANA gene 36016079 36016546 468.0 - 0 ENSG00000214914.3 processed_pseudogene RPL23AP3 1 OTTHUMG00000086467.1 pseudo_consens +41278 chr21 HAVANA gene 36050214 36051377 1164.0 + 0 ENSG00000189089.5 processed_pseudogene RIMKLBP1 1 OTTHUMG00000086605.2 pseudo_consens +41279 chr21 HAVANA gene 36060432 36064408 446.0 + 0 ENSG00000236677.1 antisense AP000688.4 2 OTTHUMG00000086615.1 +41280 chr21 ENSEMBL gene 36066545 36066652 108.0 + 0 ENSG00000200213.1 snRNA RNU6-992P 3 +41281 chr21 HAVANA gene 36069941 36073166 2450.0 + 0 ENSG00000159228.12 protein_coding CBR1 1 OTTHUMG00000086618.2 +41282 chr21 HAVANA gene 36034541 36079389 7312.0 - 0 ENSG00000185917.13 protein_coding SETD4 2 OTTHUMG00000086483.3 overlapping_locus +41283 chr21 HAVANA gene 36082859 36090414 348.0 + 0 ENSG00000236119.1 lincRNA AP000688.3 2 OTTHUMG00000086614.1 +41284 chr21 HAVANA gene 36104881 36109690 2336.0 + 0 ENSG00000233393.1 lincRNA AP000688.2 2 OTTHUMG00000153500.1 +41285 chr21 HAVANA gene 36069642 36126640 1293.0 - 0 ENSG00000230212.6 sense_intronic AP000688.1 1 OTTHUMG00000086616.3 overlapping_locus +41286 chr21 HAVANA gene 36130489 36131376 888.0 + 0 ENSG00000226054.2 processed_pseudogene MEMO1P1 2 OTTHUMG00000086608.1 +41287 chr21 HAVANA gene 36132450 36133032 583.0 + 0 ENSG00000214889.3 processed_pseudogene RPS9P1 1 OTTHUMG00000086609.1 pseudo_consens +41288 chr21 HAVANA gene 36134912 36146566 1169.0 + 0 ENSG00000159231.5 protein_coding CBR3 2 OTTHUMG00000086617.1 +41289 chr21 HAVANA gene 36168970 36170180 1211.0 - 0 ENSG00000228149.1 processed_pseudogene RPL3P1 1 OTTHUMG00000086610.1 pseudo_consens +41290 chr21 HAVANA gene 36131767 36175815 8459.0 - 0 ENSG00000236830.6 processed_transcript CBR3-AS1 1 OTTHUMG00000086607.4 +41291 chr21 HAVANA gene 36156782 36294274 9030.0 + 0 ENSG00000142197.12 protein_coding DOP1B 2 OTTHUMG00000086619.4 +41292 chr21 HAVANA gene 36295173 36295702 530.0 - 0 ENSG00000214867.3 processed_pseudogene SRSF9P1 1 OTTHUMG00000086621.1 pseudo_consens +41293 chr21 HAVANA gene 36319792 36320670 879.0 - 0 ENSG00000273199.1 antisense AP000692.2 2 OTTHUMG00000186487.1 +41294 chr21 HAVANA gene 36360630 36362040 596.0 + 0 ENSG00000228107.1 sense_overlapping AP000692.1 1 OTTHUMG00000086612.1 overlapping_locus +41295 chr21 HAVANA gene 36320189 36386148 6408.0 + 0 ENSG00000159256.12 protein_coding MORC3 1 OTTHUMG00000086620.4 overlapping_locus +41296 chr21 HAVANA gene 36388878 36389112 235.0 - 0 ENSG00000224421.1 processed_pseudogene ATP5MFP1 1 OTTHUMG00000086613.1 pseudo_consens +41297 chr21 HAVANA gene 36385378 36419015 5118.0 + 0 ENSG00000159259.7 protein_coding CHAF1B 2 OTTHUMG00000086606.3 overlapping_locus +41298 chr21 HAVANA gene 36430360 36481070 893.0 + 0 ENSG00000230479.1 antisense AP000695.1 2 OTTHUMG00000086643.1 overlapping_locus +41299 chr21 HAVANA gene 36485983 36487411 1109.0 - 0 ENSG00000223741.1 processed_pseudogene PSMD4P1 1 OTTHUMG00000086641.1 pseudo_consens +41300 chr21 HAVANA gene 36485867 36487760 1894.0 + 0 ENSG00000279365.1 TEC AP000695.3 2 OTTHUMG00000187462.1 overlapping_locus +41301 chr21 HAVANA gene 36445731 36532408 1178.0 + 0 ENSG00000233818.1 antisense AP000695.2 1 OTTHUMG00000086611.2 overlapping_locus +41302 chr21 HAVANA gene 36460621 36576569 2853.0 - 0 ENSG00000159261.10 protein_coding CLDN14 2 OTTHUMG00000086638.1 retrogene +41303 chr21 HAVANA gene 36632681 36637033 1133.0 - 0 ENSG00000231324.1 lincRNA AP000696.1 1 OTTHUMG00000086644.1 +41304 chr21 HAVANA gene 36698773 36701564 339.0 - 0 ENSG00000224269.1 antisense AP000697.1 2 OTTHUMG00000086642.1 +41305 chr21 HAVANA gene 36699133 36749917 7652.0 + 0 ENSG00000159263.15 protein_coding SIM2 2 OTTHUMG00000086637.3 +41306 chr21 HAVANA gene 36803984 36806284 531.0 - 0 ENSG00000237646.1 sense_intronic HLCS-IT1 2 OTTHUMG00000086640.1 overlapping_locus +41307 chr21 ENSEMBL gene 36851911 36852028 118.0 + 0 ENSG00000199806.1 rRNA_pseudogene RNA5SP491 3 +41308 chr21 HAVANA gene 36943267 36944125 539.0 + 0 ENSG00000270652.1 processed_pseudogene DPRXP5 1 OTTHUMG00000185257.1 pseudo_consens +41309 chr21 HAVANA gene 36966492 36975164 2266.0 + 0 ENSG00000224790.2 lincRNA AP000704.1 1 OTTHUMG00000086635.3 +41310 chr21 ENSEMBL gene 36986739 36986851 113.0 - 0 ENSG00000207416.1 misc_RNA RF00019 3 +41311 chr21 HAVANA gene 36750888 36990236 7889.0 - 0 ENSG00000159267.14 protein_coding HLCS 2 OTTHUMG00000086636.4 ncRNA_host,overlapping_locus +41312 chr21 HAVANA gene 36994643 36995075 433.0 + 0 ENSG00000215734.3 processed_pseudogene MRPL20P1 1 OTTHUMG00000086645.1 pseudo_consens +41313 chr21 HAVANA gene 37006150 37019659 2319.0 + 0 ENSG00000183145.8 protein_coding RIPPLY3 2 OTTHUMG00000086639.1 +41314 chr21 ENSEMBL gene 37045530 37045636 107.0 + 0 ENSG00000212136.1 snRNA RNU6-696P 3 +41315 chr21 HAVANA gene 37059170 37073170 7923.0 - 0 ENSG00000185808.13 protein_coding PIGP 2 OTTHUMG00000086653.7 +41316 chr21 HAVANA gene 37100814 37101343 530.0 + 0 ENSG00000270116.1 sense_intronic AP001429.1 2 OTTHUMG00000183922.1 overlapping_locus +41317 chr21 HAVANA gene 37187666 37193926 1097.0 - 0 ENSG00000228677.1 antisense TTC3-AS1 2 OTTHUMG00000086658.1 +41318 chr21 HAVANA gene 37073226 37203112 15883.0 + 0 ENSG00000182670.13 protein_coding TTC3 1 OTTHUMG00000086654.7 overlapping_locus +41319 chr21 ENSEMBL gene 37215605 37215903 299.0 + 0 ENSG00000263969.2 misc_RNA RN7SL678P 3 +41320 chr21 HAVANA gene 37208503 37221736 1901.0 + 0 ENSG00000230366.9 lincRNA DSCR9 2 OTTHUMG00000086655.2 ncRNA_host,overlapping_locus +41321 chr21 HAVANA gene 37221419 37237744 520.0 + 0 ENSG00000242553.1 lincRNA AP001432.1 1 OTTHUMG00000086656.1 overlapping_locus +41322 chr21 HAVANA gene 37223420 37267919 9301.0 - 0 ENSG00000157538.13 protein_coding VPS26C 1 OTTHUMG00000086659.3 +41323 chr21 HAVANA gene 37267784 37268497 714.0 + 0 ENSG00000272948.2 antisense AP001412.1 2 OTTHUMG00000186494.2 +41324 chr21 HAVANA gene 37365477 37365932 456.0 - 0 ENSG00000273210.1 antisense AP001437.1 2 OTTHUMG00000186495.1 +41325 chr21 HAVANA gene 37365573 37526358 26602.0 + 0 ENSG00000157540.20 protein_coding DYRK1A 2 OTTHUMG00000086657.8 +41326 chr21 HAVANA gene 37717102 37719569 357.0 - 0 ENSG00000233213.1 sense_intronic KCNJ6-AS1 2 OTTHUMG00000086669.2 overlapping_locus +41327 chr21 HAVANA gene 38006544 38010618 424.0 - 0 ENSG00000223608.1 sense_intronic DSCR4-IT1 2 OTTHUMG00000086672.1 overlapping_locus +41328 chr21 HAVANA gene 37607376 38121345 19965.0 - 0 ENSG00000157542.10 protein_coding KCNJ6 2 OTTHUMG00000086667.4 overlapping_locus +41329 chr21 HAVANA gene 37951425 38121360 2054.0 - 0 ENSG00000184029.9 lincRNA DSCR4 1 OTTHUMG00000086673.3 overlapping_locus +41330 chr21 HAVANA gene 38121451 38156511 831.0 + 0 ENSG00000198054.12 lincRNA DSCR8 2 OTTHUMG00000090610.2 overlapping_locus +41331 chr21 HAVANA gene 38204141 38206080 1940.0 - 0 ENSG00000270835.2 transcribed_processed_pseudogene AP001425.1 1 OTTHUMG00000184885.2 pseudo_consens +41332 chr21 HAVANA gene 38206156 38208644 860.0 + 0 ENSG00000233316.4 sense_intronic DSCR10 2 OTTHUMG00000090611.2 overlapping_locus +41333 chr21 HAVANA gene 38237217 38238201 287.0 - 0 ENSG00000226012.1 lincRNA AP001434.1 1 OTTHUMG00000090613.1 +41334 chr21 HAVANA gene 38238227 38238664 438.0 - 0 ENSG00000231123.1 processed_pseudogene SPATA20P1 1 OTTHUMG00000090612.1 pseudo_consens +41335 chr21 HAVANA gene 38155549 38307357 10342.0 + 0 ENSG00000157551.18 protein_coding KCNJ15 2 OTTHUMG00000090609.6 overlapping_locus +41336 chr21 HAVANA gene 38323635 38333421 859.0 - 0 ENSG00000231231.5 lincRNA LINC01423 2 OTTHUMG00000090768.1 +41337 chr21 HAVANA gene 38502445 38502621 177.0 + 0 ENSG00000231480.1 processed_pseudogene SNRPGP13 1 OTTHUMG00000090770.1 pseudo_consens +41338 chr21 HAVANA gene 38380027 38661780 7588.0 - 0 ENSG00000157554.18 protein_coding ERG 2 OTTHUMG00000090767.3 +41339 chr21 HAVANA gene 38739021 38747460 1972.0 - 0 ENSG00000223806.7 lincRNA LINC00114 2 OTTHUMG00000090771.2 +41340 chr21 HAVANA gene 38805307 38824955 4595.0 + 0 ENSG00000157557.11 protein_coding ETS2 2 OTTHUMG00000090769.5 +41341 chr21 HAVANA gene 38846247 38848644 487.0 + 0 ENSG00000229986.1 lincRNA AP001042.1 1 OTTHUMG00000086700.1 +41342 chr21 ENSEMBL gene 38894785 38894867 83.0 + 0 ENSG00000272015.1 snoRNA RF00091 3 +41343 chr21 HAVANA gene 38894917 38895252 336.0 + 0 ENSG00000227721.1 processed_pseudogene RPSAP64 1 OTTHUMG00000086703.1 pseudo_consens,overlapping_locus +41344 chr21 HAVANA gene 38888772 38903905 288.0 + 0 ENSG00000229925.1 lincRNA AP001043.2 2 OTTHUMG00000086701.1 ncRNA_host,overlapping_locus +41345 chr21 HAVANA gene 38863676 38956467 7860.0 - 0 ENSG00000205622.9 lincRNA AP001043.1 2 OTTHUMG00000066036.7 overlapping_locus +41346 chr21 HAVANA gene 38974429 38977774 1598.0 - 0 ENSG00000232837.1 lincRNA LINC01700 1 OTTHUMG00000066032.1 +41347 chr21 HAVANA gene 38988707 39006153 1412.0 - 0 ENSG00000235888.1 lincRNA AF064858.1 2 OTTHUMG00000066035.3 +41348 chr21 HAVANA gene 39006648 39011329 509.0 - 0 ENSG00000237721.1 lincRNA AF064858.3 2 OTTHUMG00000086702.1 +41349 chr21 HAVANA gene 39028536 39029128 292.0 - 0 ENSG00000237609.1 lincRNA AF064858.2 1 OTTHUMG00000066033.2 +41350 chr21 HAVANA gene 39127568 39128040 473.0 + 0 ENSG00000228861.5 processed_pseudogene RPL23AP12 1 OTTHUMG00000066031.2 pseudo_consens +41351 chr21 ENSEMBL gene 39171462 39171560 99.0 - 0 ENSG00000276873.1 misc_RNA RF02271 3 +41352 chr21 HAVANA gene 39171130 39172106 977.0 - 0 ENSG00000235701.1 processed_pseudogene PCBP2P1 1 OTTHUMG00000066029.2 pseudo_consens +41353 chr21 HAVANA gene 39174769 39183851 2515.0 - 0 ENSG00000183527.11 protein_coding PSMG1 2 OTTHUMG00000066034.5 +41354 chr21 HAVANA gene 39184469 39184899 431.0 + 0 ENSG00000272991.1 antisense AF129408.1 2 OTTHUMG00000186501.1 +41355 chr21 HAVANA gene 39216624 39217506 266.0 + 0 ENSG00000232608.1 processed_pseudogene TIMM9P2 1 OTTHUMG00000066153.1 pseudo_consens +41356 chr21 HAVANA gene 39217093 39219805 489.0 - 0 ENSG00000237373.1 sense_overlapping BRWD1-IT1 1 OTTHUMG00000133692.1 overlapping_locus +41357 chr21 HAVANA gene 39235386 39236020 635.0 - 0 ENSG00000229623.1 processed_pseudogene METTL21AP1 1 OTTHUMG00000066177.1 pseudo_consens,overlapping_locus +41358 chr21 HAVANA gene 39313935 39314962 1028.0 + 0 ENSG00000255568.3 antisense BRWD1-AS2 2 OTTHUMG00000066154.5 overlapping_locus +41359 chr21 HAVANA gene 39184176 39321559 19794.0 - 0 ENSG00000185658.13 protein_coding BRWD1 1 OTTHUMG00000066030.8 overlapping_locus +41360 chr21 HAVANA gene 39315707 39323218 691.0 + 0 ENSG00000238141.2 antisense BRWD1-AS1 2 OTTHUMG00000133705.2 +41361 chr21 ENSEMBL gene 39344537 39344628 92.0 + 0 ENSG00000252915.1 misc_RNA RF00019 3 +41362 chr21 HAVANA gene 39342315 39349647 5102.0 - 0 ENSG00000205581.10 protein_coding HMGN1 2 OTTHUMG00000066178.5 +41363 chr21 HAVANA gene 39373763 39377066 1784.0 - 0 ENSG00000227406.1 processed_pseudogene RNF6P1 1 OTTHUMG00000102163.1 pseudo_consens +41364 chr21 HAVANA gene 39377698 39428528 8721.0 + 0 ENSG00000182093.15 protein_coding WRB 1 OTTHUMG00000066250.22 overlapping_locus +41365 chr21 HAVANA gene 39405844 39445805 5841.0 - 0 ENSG00000157578.13 protein_coding LCA5L 2 OTTHUMG00000066280.7 +41366 chr21 ENSEMBL gene 39447010 39447069 60.0 + 0 ENSG00000275523.1 miRNA MIR6508 3 +41367 chr21 HAVANA gene 39488327 39488760 434.0 + 0 ENSG00000235808.1 processed_pseudogene MYL6P2 1 OTTHUMG00000086714.1 pseudo_consens,overlapping_locus +41368 chr21 HAVANA gene 39491544 39491898 355.0 - 0 ENSG00000228349.1 processed_pseudogene RPS26P4 1 OTTHUMG00000086713.1 pseudo_consens +41369 chr21 HAVANA gene 39380332 39515506 2127.0 + 0 ENSG00000285815.1 protein_coding WRB-SH3BGR 2 OTTHUMG00000192633.1 ncRNA_host,overlapping_locus +41370 chr21 HAVANA gene 39445855 39515506 1495.0 + 0 ENSG00000185437.13 protein_coding SH3BGR 1 OTTHUMG00000074113.13 ncRNA_host,overlapping_locus +41371 chr21 HAVANA gene 39525583 39529855 3980.0 + 0 ENSG00000235012.1 processed_pseudogene AF121897.1 1 OTTHUMG00000086715.2 pseudo_consens +41372 chr21 HAVANA gene 39597147 39612821 2516.0 - 0 ENSG00000184809.12 antisense B3GALT5-AS1 1 OTTHUMG00000086722.1 +41373 chr21 HAVANA gene 39556442 39673137 14319.0 + 0 ENSG00000183778.17 protein_coding B3GALT5 2 OTTHUMG00000086725.3 overlapping_locus +41374 chr21 HAVANA gene 39630271 39726085 544.0 + 0 ENSG00000225330.1 sense_overlapping AF064860.1 2 OTTHUMG00000086721.1 overlapping_locus +41375 chr21 HAVANA gene 39727755 39730680 1786.0 + 0 ENSG00000231713.2 lincRNA AF064860.2 2 OTTHUMG00000086723.2 +41376 chr21 HAVANA gene 39745407 39802096 2650.0 + 0 ENSG00000183067.5 protein_coding IGSF5 2 OTTHUMG00000086724.1 +41377 chr21 HAVANA gene 39867317 39929397 1106.0 + 0 ENSG00000183036.10 protein_coding PCP4 2 OTTHUMG00000086731.3 +41378 chr21 ENSEMBL gene 40212352 40212431 80.0 - 0 ENSG00000263973.1 miRNA MIR4760 3 +41379 chr21 HAVANA gene 40383083 40385358 1769.0 + 0 ENSG00000235123.5 antisense DSCAM-AS1 2 OTTHUMG00000086733.1 +41380 chr21 ENSEMBL gene 40513144 40513279 136.0 + 0 ENSG00000207147.1 snoRNA RF00432 3 +41381 chr21 HAVANA gene 40615378 40630767 826.0 - 0 ENSG00000233756.5 sense_intronic DSCAM-IT1 2 OTTHUMG00000086730.2 overlapping_locus +41382 chr21 HAVANA gene 40010999 40847139 8577.0 - 0 ENSG00000171587.14 protein_coding DSCAM 1 OTTHUMG00000086732.1 ncRNA_host,overlapping_locus +41383 chr21 HAVANA gene 40863994 40864473 480.0 + 0 ENSG00000230859.1 processed_pseudogene YRDCP3 1 OTTHUMG00000154985.1 pseudo_consens +41384 chr21 HAVANA gene 41141493 41148133 2439.0 - 0 ENSG00000226496.2 antisense LINC00323 2 OTTHUMG00000086741.2 +41385 chr21 ENSEMBL gene 41167557 41167629 73.0 + 0 ENSG00000263681.1 miRNA MIR3197 3 +41386 chr21 HAVANA gene 41180097 41180626 382.0 + 0 ENSG00000224388.1 antisense BACE2-IT1 2 OTTHUMG00000086745.1 overlapping_locus +41387 chr21 HAVANA gene 41175231 41186788 10570.0 - 0 ENSG00000280109.3 antisense PLAC4 2 OTTHUMG00000086743.2 +41388 chr21 HAVANA gene 41167801 41282518 9619.0 + 0 ENSG00000182240.15 protein_coding BACE2 2 OTTHUMG00000086742.2 overlapping_locus +41389 chr21 HAVANA gene 41304212 41357431 3599.0 + 0 ENSG00000183844.16 protein_coding FAM3B 2 OTTHUMG00000086752.2 +41390 chr21 HAVANA gene 41361943 41409390 13047.0 + 0 ENSG00000183486.12 protein_coding MX2 1 OTTHUMG00000086753.6 +41391 chr21 HAVANA gene 41441056 41445708 1116.0 - 0 ENSG00000228318.3 antisense AP001610.1 1 OTTHUMG00000086754.3 +41392 chr21 HAVANA gene 41420304 41459214 8616.0 + 0 ENSG00000157601.13 protein_coding MX1 2 OTTHUMG00000086755.7 +41393 chr21 HAVANA gene 41464551 41531116 6117.0 - 0 ENSG00000184012.11 protein_coding TMPRSS2 2 OTTHUMG00000086762.6 +41394 chr21 ENSEMBL gene 41539206 41539326 121.0 + 0 ENSG00000207503.1 snoRNA RF00421 3 +41395 chr21 HAVANA gene 41559125 41562958 422.0 - 0 ENSG00000232806.1 lincRNA AP001610.2 2 OTTHUMG00000086761.1 +41396 chr21 HAVANA gene 41576135 41581319 346.0 - 0 ENSG00000223400.1 lincRNA AP006748.1 2 OTTHUMG00000086763.1 +41397 chr21 HAVANA gene 41679181 41697336 575.0 + 0 ENSG00000227702.1 lincRNA LINC00111 2 OTTHUMG00000086772.1 +41398 chr21 HAVANA gene 41711520 41715775 2114.0 - 0 ENSG00000236384.7 lincRNA LINC00479 2 OTTHUMG00000086773.5 +41399 chr21 HAVANA gene 41716436 41717580 522.0 + 0 ENSG00000232401.1 antisense LINC00112 2 OTTHUMG00000086769.1 +41400 chr21 HAVANA gene 41739373 41741308 461.0 + 0 ENSG00000236883.1 antisense AP001615.1 2 OTTHUMG00000086771.1 +41401 chr21 ENSEMBL gene 41746772 41746841 70.0 - 0 ENSG00000275166.1 miRNA MIR6814 3 +41402 chr21 HAVANA gene 41739369 41767106 4033.0 - 0 ENSG00000183421.11 protein_coding RIPK4 2 OTTHUMG00000086770.1 ncRNA_host +41403 chr21 HAVANA gene 41870633 41872054 587.0 + 0 ENSG00000236545.1 antisense AP001619.2 2 OTTHUMG00000086778.1 +41404 chr21 HAVANA gene 41874756 41877613 447.0 - 0 ENSG00000227698.1 sense_intronic AP001619.1 2 OTTHUMG00000086780.1 overlapping_locus +41405 chr21 HAVANA gene 41798225 41879482 13004.0 - 0 ENSG00000141956.13 protein_coding PRDM15 2 OTTHUMG00000086781.7 overlapping_locus +41406 chr21 ENSEMBL gene 41882205 41882300 96.0 + 0 ENSG00000251778.1 snoRNA RF00334 3 +41407 chr21 HAVANA gene 41885112 41953890 8602.0 - 0 ENSG00000157617.16 protein_coding C2CD2 2 OTTHUMG00000086779.4 +41408 chr21 HAVANA gene 41986831 42010387 8062.0 - 0 ENSG00000173276.13 protein_coding ZBTB21 1 OTTHUMG00000086789.2 +41409 chr21 HAVANA gene 42009194 42024924 1363.0 + 0 ENSG00000237232.7 lincRNA ZNF295-AS1 2 OTTHUMG00000086787.2 +41410 chr21 HAVANA gene 42102134 42108534 2141.0 - 0 ENSG00000184385.2 sense_overlapping UMODL1-AS1 1 OTTHUMG00000086790.2 +41411 chr21 HAVANA gene 42062959 42143453 7278.0 + 0 ENSG00000177398.18 protein_coding UMODL1 2 OTTHUMG00000086788.3 +41412 chr21 ENSEMBL gene 42221173 42221286 114.0 + 0 ENSG00000223262.1 rRNA_pseudogene RNA5SP492 3 +41413 chr21 HAVANA gene 42199689 42297244 6121.0 + 0 ENSG00000160179.18 protein_coding ABCG1 1 OTTHUMG00000086791.4 +41414 chr21 HAVANA gene 42311667 42315651 1168.0 - 0 ENSG00000160180.15 protein_coding TFF3 2 OTTHUMG00000086798.4 +41415 chr21 HAVANA gene 42346357 42351128 830.0 - 0 ENSG00000160181.8 protein_coding TFF2 2 OTTHUMG00000086797.1 +41416 chr21 HAVANA gene 42362282 42366594 551.0 - 0 ENSG00000160182.2 protein_coding TFF1 2 OTTHUMG00000086799.1 +41417 chr21 HAVANA gene 42371837 42396846 5713.0 - 0 ENSG00000160183.14 protein_coding TMPRSS3 2 OTTHUMG00000086796.5 +41418 chr21 ENSEMBL gene 42417497 42417593 97.0 - 0 ENSG00000252619.1 snRNA RNU6-1149P 3 +41419 chr21 HAVANA gene 42403447 42447681 3915.0 + 0 ENSG00000160185.14 protein_coding UBASH3A 2 OTTHUMG00000086805.2 +41420 chr21 HAVANA gene 42472486 42496354 2988.0 - 0 ENSG00000160188.9 protein_coding RSPH1 2 OTTHUMG00000086804.2 +41421 chr21 HAVANA gene 42496539 42497443 449.0 + 0 ENSG00000239930.2 sense_intronic AP001625.3 2 OTTHUMG00000086811.1 overlapping_locus +41422 chr21 HAVANA gene 42508624 42509661 463.0 + 0 ENSG00000231867.1 sense_intronic AP001625.1 2 OTTHUMG00000086812.1 overlapping_locus +41423 chr21 HAVANA gene 42560374 42561934 575.0 - 0 ENSG00000235772.1 antisense AP001625.2 1 OTTHUMG00000086815.1 +41424 chr21 HAVANA gene 42496008 42581440 6814.0 + 0 ENSG00000160190.13 protein_coding SLC37A1 2 OTTHUMG00000086803.6 overlapping_locus +41425 chr21 HAVANA gene 42599280 42615058 1775.0 - 0 ENSG00000225431.1 lincRNA LINC01671 2 OTTHUMG00000086813.1 +41426 chr21 HAVANA gene 42648271 42651244 2854.0 - 0 ENSG00000235023.1 antisense AP001626.1 2 OTTHUMG00000086814.1 +41427 chr21 HAVANA gene 42733594 42741758 1754.0 - 0 ENSG00000225731.1 antisense AP001627.1 2 OTTHUMG00000153501.1 +41428 chr21 HAVANA gene 42653636 42775509 5266.0 + 0 ENSG00000160191.17 protein_coding PDE9A 2 OTTHUMG00000086825.1 +41429 chr21 HAVANA gene 42777819 42779994 513.0 - 0 ENSG00000283051.1 lincRNA LINC01668 2 OTTHUMG00000191496.1 +41430 chr21 HAVANA gene 42781074 42782229 784.0 - 0 ENSG00000233754.2 lincRNA AP001628.2 1 OTTHUMG00000086827.2 +41431 chr21 HAVANA gene 42831040 42836477 285.0 - 0 ENSG00000225218.1 lincRNA AP001628.1 1 OTTHUMG00000086824.1 +41432 chr21 HAVANA gene 42843094 42879568 2738.0 - 0 ENSG00000160193.11 protein_coding WDR4 2 OTTHUMG00000086826.1 +41433 chr21 HAVANA gene 42879644 42913304 6345.0 + 0 ENSG00000160194.17 protein_coding NDUFV3 2 OTTHUMG00000086823.3 +41434 chr21 HAVANA gene 42916803 42925646 2842.0 - 0 ENSG00000233056.2 lincRNA ERVH48-1 2 OTTHUMG00000086835.1 +41435 chr21 ENSEMBL gene 42950928 42951014 87.0 - 0 ENSG00000264580.1 miRNA MIR5692B 3 +41436 chr21 HAVANA gene 42964639 42965363 437.0 - 0 ENSG00000224100.1 antisense AP001630.1 2 OTTHUMG00000086837.1 +41437 chr21 HAVANA gene 42974510 43033931 7621.0 + 0 ENSG00000160199.14 protein_coding PKNOX1 1 OTTHUMG00000086833.5 +41438 chr21 HAVANA gene 43053191 43076943 6786.0 - 0 ENSG00000160200.17 protein_coding CBS 2 OTTHUMG00000086834.7 +41439 chr21 HAVANA gene 43092956 43107587 11112.0 - 0 ENSG00000160201.11 protein_coding U2AF1 2 OTTHUMG00000086836.3 +41440 chr21 HAVANA gene 43115334 43115709 376.0 - 0 ENSG00000232777.1 processed_pseudogene MRPL51P2 1 OTTHUMG00000086843.1 pseudo_consens +41441 chr21 HAVANA gene 43140523 43141092 422.0 - 0 ENSG00000236663.1 antisense FRGCA 1 OTTHUMG00000086845.1 +41442 chr21 HAVANA gene 43159066 43162277 1052.0 - 0 ENSG00000228120.2 lincRNA AP001631.1 2 OTTHUMG00000086844.1 +41443 chr21 HAVANA gene 43169008 43172805 1821.0 + 0 ENSG00000160202.7 protein_coding CRYAA 2 OTTHUMG00000086842.1 +41444 chr21 HAVANA gene 43322417 43332039 699.0 - 0 ENSG00000237864.1 lincRNA LINC00322 1 OTTHUMG00000086864.2 +41445 chr21 HAVANA gene 43358147 43362349 2798.0 - 0 ENSG00000237989.1 lincRNA LINC01679 2 OTTHUMG00000086865.1 +41446 chr21 HAVANA gene 43363332 43366566 2816.0 + 0 ENSG00000225637.1 lincRNA AP001046.1 2 OTTHUMG00000086868.1 +41447 chr21 HAVANA gene 43414483 43427189 5268.0 - 0 ENSG00000142178.8 protein_coding SIK1 2 OTTHUMG00000086874.2 +41448 chr21 HAVANA gene 43446601 43453893 4222.0 + 0 ENSG00000188660.3 lincRNA LINC00319 2 OTTHUMG00000086866.1 +41449 chr21 HAVANA gene 43465309 43467298 280.0 + 0 ENSG00000223975.1 lincRNA AP001048.1 1 OTTHUMG00000086871.1 +41450 chr21 HAVANA gene 43462094 43479534 2303.0 - 0 ENSG00000185186.8 lincRNA LINC00313 2 OTTHUMG00000086867.2 +41451 chr21 HAVANA gene 43551229 43551600 372.0 + 0 ENSG00000214326.2 processed_pseudogene RPL31P1 1 OTTHUMG00000086873.1 pseudo_consens +41452 chr21 HAVANA gene 43565189 43565648 460.0 + 0 ENSG00000234289.5 protein_coding H2BFS 2 OTTHUMG00000086869.3 +41453 chr21 ENSEMBL gene 43609887 43609989 103.0 - 0 ENSG00000278433.1 miRNA MIR6070 3 +41454 chr21 HAVANA gene 43529192 43659493 1908.0 - 0 ENSG00000160207.8 protein_coding HSF2BP 1 OTTHUMG00000086863.2 ncRNA_host +41455 chr21 HAVANA gene 43659548 43696079 5762.0 + 0 ENSG00000160208.12 protein_coding RRP1B 2 OTTHUMG00000086872.3 +41456 chr21 ENSEMBL gene 43748365 43748468 99.0 - 0 ENSG00000281420.1 pseudogene AP001052.1 3 +41457 chr21 HAVANA gene 43719094 43762307 11912.0 + 0 ENSG00000160209.18 protein_coding PDXK 2 OTTHUMG00000086870.4 +41458 chr21 HAVANA gene 43772511 43776445 3935.0 - 0 ENSG00000160213.7 protein_coding CSTB 2 OTTHUMG00000086886.6 +41459 chr21 HAVANA gene 43783123 43783573 451.0 + 0 ENSG00000234030.1 processed_pseudogene TMEM97P1 1 OTTHUMG00000154997.1 pseudo_consens +41460 chr21 HAVANA gene 43789513 43805293 4251.0 + 0 ENSG00000160214.12 protein_coding RRP1 2 OTTHUMG00000086884.2 +41461 chr21 HAVANA gene 43805758 43812567 4874.0 - 0 ENSG00000215458.8 antisense AATBC 2 OTTHUMG00000086882.1 +41462 chr21 HAVANA gene 43855890 43856342 453.0 - 0 ENSG00000226543.3 processed_pseudogene MYL6P1 1 OTTHUMG00000086885.1 pseudo_consens +41463 chr21 ENSEMBL gene 43919795 43919901 107.0 - 0 ENSG00000199598.1 snRNA RNU6-859P 3 +41464 chr21 HAVANA gene 43865186 43986536 11296.0 + 0 ENSG00000160216.18 protein_coding AGPAT3 2 OTTHUMG00000086892.14 +41465 chr21 ENSEMBL gene 43996322 43996420 99.0 - 0 ENSG00000252606.1 snRNA RNU6-1150P 3 +41466 chr21 HAVANA gene 44046347 44047041 395.0 - 0 ENSG00000213440.2 processed_pseudogene H2AFZP1 1 OTTHUMG00000086895.1 pseudo_consens +41467 chr21 HAVANA gene 44012319 44106552 11941.0 + 0 ENSG00000160218.12 protein_coding TRAPPC10 1 OTTHUMG00000086894.3 +41468 chr21 HAVANA gene 44107290 44131181 6922.0 + 0 ENSG00000241945.7 protein_coding PWP2 2 OTTHUMG00000086893.5 +41469 chr21 HAVANA gene 44158740 44160076 867.0 - 0 ENSG00000225331.1 lincRNA LINC01678 1 OTTHUMG00000086913.1 +41470 chr21 HAVANA gene 44175489 44176453 821.0 + 0 ENSG00000237604.1 lincRNA AP001056.1 2 OTTHUMG00000086912.1 +41471 chr21 HAVANA gene 44172169 44194338 3551.0 - 0 ENSG00000285413.1 lincRNA AP001056.2 2 OTTHUMG00000192445.1 +41472 chr21 HAVANA gene 44200616 44207399 2100.0 - 0 ENSG00000232124.2 processed_transcript AP001057.1 1 OTTHUMG00000086911.3 +41473 chr21 HAVANA gene 44133605 44210114 7952.0 + 0 ENSG00000160221.17 protein_coding GATD3A 1 OTTHUMG00000086916.8 +41474 chr21 HAVANA gene 44217014 44240966 9341.0 - 0 ENSG00000160223.17 protein_coding ICOSLG 2 OTTHUMG00000086920.2 +41475 chr21 HAVANA gene 44241847 44242081 235.0 + 0 ENSG00000278158.1 lincRNA AP001059.3 2 OTTHUMG00000186518.1 +41476 chr21 HAVANA gene 44244545 44244993 449.0 + 0 ENSG00000275799.1 lincRNA AP001059.2 2 OTTHUMG00000186519.1 +41477 chr21 HAVANA gene 44250813 44251520 523.0 + 0 ENSG00000232010.1 antisense AP001059.1 1 OTTHUMG00000086917.1 +41478 chr21 HAVANA gene 44246339 44262216 1859.0 - 0 ENSG00000142182.8 protein_coding DNMT3L 2 OTTHUMG00000086914.5 +41479 chr21 HAVANA gene 44285838 44298648 4678.0 + 0 ENSG00000160224.16 protein_coding AIRE 2 OTTHUMG00000086921.4 +41480 chr21 HAVANA gene 44300051 44327376 8926.0 + 0 ENSG00000141959.16 protein_coding PFKL 2 OTTHUMG00000086910.2 +41481 chr21 HAVANA gene 44328944 44330221 846.0 - 0 ENSG00000241728.5 sense_overlapping AP001062.3 1 OTTHUMG00000086918.1 overlapping_locus +41482 chr21 HAVANA gene 44331234 44335851 4354.0 + 0 ENSG00000184441.4 antisense AP001062.1 1 OTTHUMG00000086919.1 +41483 chr21 HAVANA gene 44328944 44339402 6063.0 - 0 ENSG00000160226.15 protein_coding CFAP410 2 OTTHUMG00000086909.1 overlapping_locus +41484 chr21 HAVANA gene 44339376 44340470 127.0 + 0 ENSG00000232969.1 antisense AP001062.2 2 OTTHUMG00000086923.1 +41485 chr21 HAVANA gene 44347767 44348295 529.0 - 0 ENSG00000260256.1 lincRNA AP001063.1 2 OTTHUMG00000172757.1 +41486 chr21 HAVANA gene 44414588 44425272 2292.0 - 0 ENSG00000230061.2 antisense TRPM2-AS 2 OTTHUMG00000040845.3 +41487 chr21 ENSEMBL gene 44437121 44437175 55.0 + 0 ENSG00000266692.1 snoRNA RF00285 3 +41488 chr21 ENSEMBL gene 44439035 44439110 76.0 + 0 ENSG00000264452.1 snoRNA RF00285 3 +41489 chr21 HAVANA gene 44350163 44443081 6705.0 + 0 ENSG00000142185.16 protein_coding TRPM2 1 OTTHUMG00000040840.5 ncRNA_host +41490 chr21 HAVANA gene 44450986 44455284 784.0 - 0 ENSG00000229356.1 antisense LRRC3-DT 2 OTTHUMG00000040842.1 +41491 chr21 HAVANA gene 44455486 44462196 5869.0 + 0 ENSG00000160233.7 protein_coding LRRC3 2 OTTHUMG00000040847.4 +41492 chr21 HAVANA gene 44469929 44472516 1113.0 - 0 ENSG00000224747.1 processed_pseudogene MTCYBP21 2 OTTHUMG00000040846.1 +41493 chr21 HAVANA gene 44472895 44473739 482.0 + 0 ENSG00000223431.1 processed_pseudogene MTND6P21 2 OTTHUMG00000040843.1 +41494 chr21 HAVANA gene 44473723 44475097 1375.0 - 0 ENSG00000227999.1 processed_pseudogene MTND5P1 2 OTTHUMG00000040844.2 +41495 chr21 HAVANA gene 44477850 44478493 644.0 + 0 ENSG00000274225.1 lincRNA AP001065.1 2 OTTHUMG00000186520.1 +41496 chr21 HAVANA gene 44485577 44490288 912.0 + 0 ENSG00000228709.1 lincRNA LINC02575 1 OTTHUMG00000086925.1 +41497 chr21 HAVANA gene 44494874 44495519 646.0 + 0 ENSG00000277352.1 lincRNA AP001065.2 2 OTTHUMG00000186521.1 +41498 chr21 HAVANA gene 44506807 44516575 2355.0 + 0 ENSG00000235890.2 antisense TSPEAR-AS1 2 OTTHUMG00000041216.3 +41499 chr21 HAVANA gene 44517216 44525952 3026.0 + 0 ENSG00000182912.6 antisense TSPEAR-AS2 1 OTTHUMG00000041217.4 +41500 chr21 HAVANA gene 44538981 44540195 1215.0 - 0 ENSG00000215455.4 protein_coding KRTAP10-1 2 OTTHUMG00000057627.1 overlapping_locus +41501 chr21 HAVANA gene 44550357 44551505 1149.0 - 0 ENSG00000205445.3 protein_coding KRTAP10-2 2 OTTHUMG00000057625.1 overlapping_locus +41502 chr21 HAVANA gene 44557790 44558760 971.0 - 0 ENSG00000212935.1 protein_coding KRTAP10-3 2 OTTHUMG00000057628.1 overlapping_locus +41503 chr21 HAVANA gene 44579455 44580604 1150.0 - 0 ENSG00000241123.1 protein_coding KRTAP10-5 2 OTTHUMG00000057638.2 overlapping_locus +41504 chr21 HAVANA gene 44591268 44592505 1238.0 - 0 ENSG00000188155.11 protein_coding KRTAP10-6 2 OTTHUMG00000057634.2 overlapping_locus +41505 chr21 HAVANA gene 44600597 44602174 1578.0 + 0 ENSG00000272804.3 protein_coding KRTAP10-7 2 OTTHUMG00000188307.1 +41506 chr21 HAVANA gene 44612079 44612954 876.0 + 0 ENSG00000187766.1 protein_coding KRTAP10-8 2 OTTHUMG00000057632.1 +41507 chr21 HAVANA gene 44627123 44628293 1171.0 + 0 ENSG00000221837.5 protein_coding KRTAP10-9 2 OTTHUMG00000057637.1 +41508 chr21 HAVANA gene 44573724 44638284 2157.0 + 0 ENSG00000215454.6 protein_coding KRTAP10-4 2 OTTHUMG00000057641.2 +41509 chr21 HAVANA gene 44637356 44638455 1100.0 + 0 ENSG00000221859.2 protein_coding KRTAP10-10 2 OTTHUMG00000057631.1 +41510 chr21 HAVANA gene 44646414 44647650 1237.0 + 0 ENSG00000243489.4 protein_coding KRTAP10-11 2 OTTHUMG00000057626.1 +41511 chr21 HAVANA gene 44654213 44654659 447.0 - 0 ENSG00000212933.1 protein_coding KRTAP12-4 2 OTTHUMG00000057633.1 overlapping_locus +41512 chr21 HAVANA gene 44657932 44658341 410.0 + 0 ENSG00000205439.10 protein_coding KRTAP12-3 2 OTTHUMG00000057630.1 +41513 chr21 HAVANA gene 44666189 44666927 739.0 - 0 ENSG00000221864.4 protein_coding KRTAP12-2 2 OTTHUMG00000057636.1 overlapping_locus +41514 chr21 HAVANA gene 44675868 44678086 2219.0 - 0 ENSG00000229880.1 processed_pseudogene IMMTP1 1 OTTHUMG00000086935.2 pseudo_consens,overlapping_locus +41515 chr21 HAVANA gene 44681576 44682163 588.0 - 0 ENSG00000187175.5 protein_coding KRTAP12-1 2 OTTHUMG00000057639.1 overlapping_locus +41516 chr21 HAVANA gene 44686358 44686629 272.0 + 0 ENSG00000276647.1 processed_pseudogene KRTAP12-6P 2 OTTHUMG00000187956.1 +41517 chr21 HAVANA gene 44697172 44698044 873.0 + 0 ENSG00000189169.7 protein_coding KRTAP10-12 2 OTTHUMG00000057629.1 +41518 chr21 HAVANA gene 44702221 44702791 571.0 + 0 ENSG00000236382.1 unprocessed_pseudogene KRTAP10-13P 2 OTTHUMG00000057640.1 +41519 chr21 HAVANA gene 44497892 44711580 4471.0 - 0 ENSG00000175894.16 protein_coding TSPEAR 1 OTTHUMG00000041215.3 overlapping_locus +41520 chr21 HAVANA gene 44768580 44802019 7388.0 - 0 ENSG00000184787.18 protein_coding UBE2G2 2 OTTHUMG00000089179.6 +41521 chr21 HAVANA gene 44802577 44804717 1031.0 + 0 ENSG00000236519.1 antisense LINC01424 2 OTTHUMG00000090255.1 +41522 chr21 HAVANA gene 44805617 44818779 2732.0 - 0 ENSG00000184900.15 protein_coding SUMO3 1 OTTHUMG00000090256.4 +41523 chr21 HAVANA gene 44849585 44873903 3537.0 - 0 ENSG00000183255.11 protein_coding PTTG1IP 1 OTTHUMG00000090254.1 +41524 chr21 HAVANA gene 44921051 44929678 2438.0 + 0 ENSG00000227039.6 antisense ITGB2-AS1 2 OTTHUMG00000090253.2 +41525 chr21 HAVANA gene 44929653 44930112 460.0 - 0 ENSG00000273027.1 sense_intronic AL844908.2 2 OTTHUMG00000186257.1 overlapping_locus +41526 chr21 HAVANA gene 44885953 44931989 6797.0 - 0 ENSG00000160255.17 protein_coding ITGB2 1 OTTHUMG00000090257.10 overlapping_locus +41527 chr21 HAVANA gene 44936303 44936954 652.0 + 0 ENSG00000272825.1 antisense AL844908.1 2 OTTHUMG00000186258.1 +41528 chr21 HAVANA gene 44932814 44939913 2656.0 - 0 ENSG00000183250.11 lincRNA LINC01547 1 OTTHUMG00000090294.3 +41529 chr21 HAVANA gene 44940010 44976989 1402.0 + 0 ENSG00000160256.12 protein_coding FAM207A 2 OTTHUMG00000090293.2 +41530 chr21 HAVANA gene 44978832 44979274 443.0 + 0 ENSG00000276529.1 lincRNA AP001505.1 2 OTTHUMG00000186523.1 +41531 chr21 HAVANA gene 44989864 44994086 2155.0 - 0 ENSG00000234880.1 lincRNA LINC00163 2 OTTHUMG00000090296.1 +41532 chr21 HAVANA gene 44994362 44995185 824.0 - 0 ENSG00000261706.1 lincRNA LINC00165 2 OTTHUMG00000172755.1 +41533 chr21 HAVANA gene 44999208 45004727 733.0 - 0 ENSG00000275874.1 lincRNA PICSAR 2 OTTHUMG00000090292.2 +41534 chr21 HAVANA gene 45070952 45074165 2636.0 - 0 ENSG00000235374.2 transcribed_processed_pseudogene SSR4P1 1 OTTHUMG00000090297.4 pseudo_consens +41535 chr21 HAVANA gene 45100487 45101094 608.0 - 0 ENSG00000267857.2 lincRNA AL133499.1 2 OTTHUMG00000187465.1 +41536 chr21 HAVANA gene 45073853 45226560 10049.0 + 0 ENSG00000197381.15 protein_coding ADARB1 2 OTTHUMG00000090295.7 +41537 chr21 HAVANA gene 45234340 45264548 1764.0 + 0 ENSG00000182586.8 lincRNA LINC00334 2 OTTHUMG00000084875.3 +41538 chr21 HAVANA gene 45263928 45287898 5862.0 - 0 ENSG00000186866.16 protein_coding POFUT2 1 OTTHUMG00000084874.6 +41539 chr21 HAVANA gene 45288050 45297806 7619.0 + 0 ENSG00000223768.2 bidirectional_promoter_lncRNA LINC00205 1 OTTHUMG00000090403.3 +41540 chr21 HAVANA gene 45300245 45305257 2323.0 - 0 ENSG00000184274.3 lincRNA LINC00315 2 OTTHUMG00000090409.1 +41541 chr21 HAVANA gene 45336707 45338665 379.0 + 0 ENSG00000229382.1 lincRNA BX322557.1 2 OTTHUMG00000090402.1 +41542 chr21 HAVANA gene 45338590 45341990 455.0 - 0 ENSG00000237664.1 lincRNA LINC00316 2 OTTHUMG00000090404.1 +41543 chr21 HAVANA gene 45376191 45376382 192.0 - 0 ENSG00000228930.1 processed_pseudogene MTCO1P3 2 OTTHUMG00000090406.1 +41544 chr21 HAVANA gene 45378201 45379635 330.0 - 0 ENSG00000228355.1 antisense BX322559.1 2 OTTHUMG00000090400.1 +41545 chr21 HAVANA gene 45403809 45404369 561.0 - 0 ENSG00000273796.1 lincRNA BX322562.1 2 OTTHUMG00000186524.1 +41546 chr21 HAVANA gene 45407386 45410065 552.0 - 0 ENSG00000224574.1 antisense COL18A1-AS2 1 OTTHUMG00000137616.1 +41547 chr21 HAVANA gene 45419716 45425070 3455.0 - 0 ENSG00000183535.9 antisense COL18A1-AS1 2 OTTHUMG00000090401.3 +41548 chr21 ENSEMBL gene 45478266 45478326 61.0 + 0 ENSG00000275167.1 miRNA MIR6815 3 +41549 chr21 HAVANA gene 45405137 45513720 8525.0 + 0 ENSG00000182871.14 protein_coding COL18A1 1 OTTHUMG00000090407.5 ncRNA_host +41550 chr21 HAVANA gene 45493572 45544411 9998.0 - 0 ENSG00000173638.18 protein_coding SLC19A1 1 OTTHUMG00000090397.7 +41551 chr21 HAVANA gene 45593654 45603056 6810.0 + 0 ENSG00000233922.2 lincRNA LINC01694 1 OTTHUMG00000090408.2 +41552 chr21 HAVANA gene 45759804 45763758 3955.0 - 0 ENSG00000275139.1 antisense AL133492.1 2 OTTHUMG00000187467.1 +41553 chr21 HAVANA gene 45827961 45836419 3466.0 - 0 ENSG00000205424.1 antisense AL592528.1 2 OTTHUMG00000090417.1 +41554 chr21 HAVANA gene 45870854 45873345 2492.0 + 0 ENSG00000276633.1 sense_intronic AJ011931.1 2 OTTHUMG00000186525.1 overlapping_locus +41555 chr21 HAVANA gene 45914296 45919483 4807.0 + 0 ENSG00000280604.1 sense_overlapping AJ239328.1 2 OTTHUMG00000189529.1 +41556 chr21 HAVANA gene 45643694 45942454 6828.0 + 0 ENSG00000183570.16 protein_coding PCBP3 2 OTTHUMG00000090399.10 overlapping_locus +41557 chr21 HAVANA gene 45974489 45974953 465.0 + 0 ENSG00000274248.1 lincRNA AJ011932.1 2 OTTHUMG00000186529.1 +41558 chr21 HAVANA gene 45981737 46005050 5343.0 + 0 ENSG00000142156.14 protein_coding COL6A1 2 OTTHUMG00000090440.1 +41559 chr21 HAVANA gene 46037052 46039807 2198.0 + 0 ENSG00000224413.1 lincRNA AP001476.1 1 OTTHUMG00000090443.1 +41560 chr21 HAVANA gene 46052596 46053105 415.0 + 0 ENSG00000228235.1 lincRNA AP001476.3 2 OTTHUMG00000090442.1 +41561 chr21 HAVANA gene 46056516 46057567 355.0 + 0 ENSG00000226115.1 lincRNA AP001476.2 1 OTTHUMG00000090439.1 +41562 chr21 HAVANA gene 46072085 46072248 164.0 - 0 ENSG00000233767.1 processed_pseudogene PSMA6P3 1 OTTHUMG00000090441.1 pseudo_consens +41563 chr21 HAVANA gene 46093264 46097530 672.0 - 0 ENSG00000227438.1 antisense AP001471.1 2 OTTHUMG00000090438.1 +41564 chr21 HAVANA gene 46098097 46132849 5386.0 + 0 ENSG00000142173.14 protein_coding COL6A2 2 OTTHUMG00000090489.6 +41565 chr21 HAVANA gene 46151614 46152647 500.0 + 0 ENSG00000237338.1 antisense FTCD-AS1 1 OTTHUMG00000090486.1 +41566 chr21 HAVANA gene 46136262 46155567 3311.0 - 0 ENSG00000160282.13 protein_coding FTCD 2 OTTHUMG00000090488.2 +41567 chr21 HAVANA gene 46161148 46184476 2333.0 - 0 ENSG00000160284.14 protein_coding SPATC1L 2 OTTHUMG00000090487.3 +41568 chr21 HAVANA gene 46185079 46188941 557.0 + 0 ENSG00000228404.1 antisense AP001468.1 1 OTTHUMG00000156278.1 +41569 chr21 HAVANA gene 46220269 46225364 1117.0 + 0 ENSG00000223901.2 antisense AP001469.1 2 OTTHUMG00000090629.2 +41570 chr21 HAVANA gene 46188141 46228824 7238.0 - 0 ENSG00000160285.14 protein_coding LSS 1 OTTHUMG00000090633.9 +41571 chr21 HAVANA gene 46246890 46247682 390.0 + 0 ENSG00000228137.1 antisense AP001469.2 1 OTTHUMG00000090628.1 overlapping_locus +41572 chr21 HAVANA gene 46251549 46254133 2277.0 - 0 ENSG00000239415.1 antisense AP001469.3 2 OTTHUMG00000090631.1 overlapping_locus +41573 chr21 HAVANA gene 46229217 46259390 7605.0 + 0 ENSG00000215424.9 antisense MCM3AP-AS1 2 OTTHUMG00000090639.2 overlapping_locus +41574 chr21 HAVANA gene 46235126 46286297 9360.0 - 0 ENSG00000160294.10 protein_coding MCM3AP 2 OTTHUMG00000090630.3 overlapping_locus +41575 chr21 HAVANA gene 46286337 46297751 1807.0 + 0 ENSG00000182362.13 protein_coding YBEY 2 OTTHUMG00000090632.1 +41576 chr21 HAVANA gene 46300181 46323875 5315.0 - 0 ENSG00000160298.17 protein_coding C21orf58 1 OTTHUMG00000090634.5 +41577 chr21 HAVANA gene 46420553 46421034 482.0 - 0 ENSG00000225043.1 processed_pseudogene RPL18AP2 1 OTTHUMG00000154992.1 pseudo_consens +41578 chr21 HAVANA gene 46324122 46445769 11660.0 + 0 ENSG00000160299.16 protein_coding PCNT 2 OTTHUMG00000090665.1 +41579 chr21 HAVANA gene 46462471 46469306 428.0 + 0 ENSG00000223692.1 sense_intronic DIP2A-IT1 2 OTTHUMG00000090716.1 overlapping_locus +41580 chr21 ENSEMBL gene 46525618 46525722 105.0 + 0 ENSG00000202239.1 snRNA RNU6-396P 3 +41581 chr21 HAVANA gene 46458899 46569852 13557.0 + 0 ENSG00000160305.17 protein_coding DIP2A 2 OTTHUMG00000090717.4 ncRNA_host,overlapping_locus +41582 chr21 HAVANA gene 46598962 46605208 1448.0 - 0 ENSG00000160307.9 protein_coding S100B 1 OTTHUMG00000090715.2 +41583 chr21 HAVANA gene 46653558 46654022 465.0 - 0 ENSG00000230982.1 processed_pseudogene DSTNP1 1 OTTHUMG00000048830.1 pseudo_consens +41584 chr21 HAVANA gene 46635167 46665124 8031.0 + 0 ENSG00000160310.17 protein_coding PRMT2 1 OTTHUMG00000048806.5 +41585 chr21 HAVANA gene 46690764 46691226 463.0 + 0 ENSG00000212932.3 processed_pseudogene RPL23AP4 1 OTTHUMG00000090714.1 pseudo_consens +41586 chr22 ENSEMBL gene 10736171 10736283 113.0 - 0 ENSG00000277248.1 snRNA RF00004 3 +41587 chr22 HAVANA gene 10939388 10961338 749.0 - 0 ENSG00000283047.1 unprocessed_pseudogene FRG1FP 2 OTTHUMG00000191577.1 +41588 chr22 HAVANA gene 11066418 11068174 288.0 + 0 ENSG00000279973.2 lincRNA CU104787.1 2 OTTHUMG00000192006.1 +41589 chr22 HAVANA gene 11124337 11125705 1241.0 + 0 ENSG00000226444.2 processed_pseudogene ACTR3BP6 1 OTTHUMG00000140398.2 pseudo_consens +41590 chr22 ENSEMBL gene 11249809 11249959 151.0 - 0 ENSG00000276871.1 rRNA RF00002 3 +41591 chr22 HAVANA gene 12602466 12626642 774.0 + 0 ENSG00000283023.1 unprocessed_pseudogene FRG1GP 2 OTTHUMG00000191578.1 +41592 chr22 ENSEMBL gene 15273855 15273961 107.0 + 0 ENSG00000276138.1 snRNA RF00026 3 +41593 chr22 HAVANA gene 15282557 15288670 6114.0 - 0 ENSG00000280341.1 lincRNA AP000542.3 2 OTTHUMG00000189266.1 +41594 chr22 HAVANA gene 15290718 15297196 371.0 + 0 ENSG00000236235.1 unprocessed_pseudogene AP000542.1 2 OTTHUMG00000140362.1 +41595 chr22 HAVANA gene 15298378 15304556 6179.0 - 0 ENSG00000279442.1 lincRNA AP000542.2 2 OTTHUMG00000189267.1 +41596 chr22 HAVANA gene 15326037 15343065 1908.0 - 0 ENSG00000184624.4 unprocessed_pseudogene ZNF72P 2 OTTHUMG00000140359.1 +41597 chr22 HAVANA gene 15349467 15350043 577.0 + 0 ENSG00000236097.1 processed_pseudogene BNIP3P2 1 OTTHUMG00000155642.1 pseudo_consens +41598 chr22 HAVANA gene 15489990 15492564 297.0 + 0 ENSG00000236831.1 unprocessed_pseudogene YME1L1P1 2 OTTHUMG00000140356.1 +41599 chr22 HAVANA gene 15528159 15529139 981.0 + 0 ENSG00000130538.5 protein_coding OR11H1 2 OTTHUMG00000030069.4 +41600 chr22 HAVANA gene 15550904 15553838 2508.0 - 0 ENSG00000235759.1 processed_pseudogene ARHGAP42P3 1 OTTHUMG00000140358.3 pseudo_consens +41601 chr22 HAVANA gene 15557577 15560694 1294.0 - 0 ENSG00000233408.1 antisense AP000534.1 2 OTTHUMG00000030075.2 +41602 chr22 HAVANA gene 15562017 15564276 2260.0 - 0 ENSG00000215268.3 processed_pseudogene AP000533.2 1 OTTHUMG00000140355.1 pseudo_consens +41603 chr22 HAVANA gene 15572089 15573265 1177.0 - 0 ENSG00000213727.3 processed_pseudogene AP000533.1 1 OTTHUMG00000140354.1 pseudo_consens +41604 chr22 HAVANA gene 15541436 15578006 568.0 + 0 ENSG00000237299.1 unprocessed_pseudogene AP000534.2 2 OTTHUMG00000140352.2 +41605 chr22 HAVANA gene 15588361 15588478 118.0 + 0 ENSG00000230643.1 unprocessed_pseudogene AP000533.3 2 OTTHUMG00000140350.1 +41606 chr22 HAVANA gene 15600908 15604882 1730.0 - 0 ENSG00000230471.1 lincRNA AP000532.2 1 OTTHUMG00000140353.1 +41607 chr22 HAVANA gene 15611759 15613096 1338.0 - 0 ENSG00000231565.1 processed_pseudogene NEK2P2 1 OTTHUMG00000140351.1 pseudo_consens +41608 chr22 HAVANA gene 15615402 15615578 177.0 - 0 ENSG00000226474.1 unprocessed_pseudogene AP000532.1 2 OTTHUMG00000140338.2 +41609 chr22 HAVANA gene 15622601 15632051 1649.0 - 0 ENSG00000224435.2 unprocessed_pseudogene NF1P6 2 OTTHUMG00000140337.1 +41610 chr22 HAVANA gene 15635180 15644330 822.0 - 0 ENSG00000234381.1 unprocessed_pseudogene MED15P7 2 OTTHUMG00000140336.1 +41611 chr22 ENSEMBL gene 15701459 15701565 107.0 + 0 ENSG00000212216.1 snRNA RNU6-816P 3 +41612 chr22 HAVANA gene 15699361 15703403 2566.0 - 0 ENSG00000236666.1 antisense POTEH-AS1 2 OTTHUMG00000140316.1 +41613 chr22 HAVANA gene 15690026 15721631 2293.0 + 0 ENSG00000198062.14 protein_coding POTEH 1 OTTHUMG00000140314.5 ncRNA_host,overlapping_locus +41614 chr22 HAVANA gene 15721486 15722608 1123.0 + 0 ENSG00000241838.3 processed_pseudogene AP000529.1 1 OTTHUMG00000140315.1 pseudo_consens,overlapping_locus +41615 chr22 HAVANA gene 15749156 15750825 1097.0 - 0 ENSG00000235992.1 processed_pseudogene GRAMD4P2 1 OTTHUMG00000155641.1 pseudo_consens +41616 chr22 HAVANA gene 15746630 15778297 855.0 + 0 ENSG00000225255.6 lincRNA LINC01297 1 OTTHUMG00000140260.2 +41617 chr22 HAVANA gene 15796959 15798346 1388.0 + 0 ENSG00000271127.1 sense_intronic AP000526.1 2 OTTHUMG00000185289.1 overlapping_locus +41618 chr22 HAVANA gene 15805263 15820884 1572.0 - 0 ENSG00000232775.6 transcribed_unprocessed_pseudogene BMS1P22 2 OTTHUMG00000140198.3 +41619 chr22 HAVANA gene 15823197 15823890 694.0 + 0 ENSG00000272872.1 sense_intronic AP000525.1 2 OTTHUMG00000186093.1 overlapping_locus +41620 chr22 HAVANA gene 15826566 15827187 622.0 + 0 ENSG00000271672.1 transcribed_processed_pseudogene DUXAP8 1 OTTHUMG00000140194.3 pseudo_consens,overlapping_locus +41621 chr22 HAVANA gene 15784959 15829984 5545.0 + 0 ENSG00000206195.10 processed_transcript DUXAP8 2 OTTHUMG00000185288.2 overlapping_locus +41622 chr22 HAVANA gene 15854195 15855243 1049.0 - 0 ENSG00000215270.3 processed_pseudogene AP000523.1 1 OTTHUMG00000140200.1 pseudo_consens +41623 chr22 HAVANA gene 15852990 15893942 1493.0 + 0 ENSG00000223875.2 unprocessed_pseudogene NBEAP3 2 OTTHUMG00000140196.2 +41624 chr22 HAVANA gene 15901791 15901911 121.0 + 0 ENSG00000229286.1 unprocessed_pseudogene AP000522.1 2 OTTHUMG00000140193.1 +41625 chr22 HAVANA gene 15914721 15915800 586.0 - 0 ENSG00000233866.1 lincRNA AC145543.1 2 OTTHUMG00000140195.2 +41626 chr22 ENSEMBL gene 16141767 16141872 106.0 + 0 ENSG00000278188.1 snRNA RF00026 3 +41627 chr22 HAVANA gene 16387694 16390887 604.0 + 0 ENSG00000225293.1 unprocessed_pseudogene ABCD1P4 2 OTTHUMG00000030330.4 +41628 chr22 HAVANA gene 16405330 16405417 88.0 + 0 ENSG00000226160.1 processed_pseudogene AC137499.1 2 OTTHUMG00000140366.1 +41629 chr22 HAVANA gene 16423943 16426031 1612.0 + 0 ENSG00000229658.1 unprocessed_pseudogene PABPC1P9 1 OTTHUMG00000140367.3 pseudo_consens +41630 chr22 HAVANA gene 16428947 16476870 1288.0 - 0 ENSG00000227367.1 unprocessed_pseudogene SLC9B1P4 2 OTTHUMG00000140399.1 +41631 chr22 ENSEMBL gene 16486985 16488322 1338.0 + 0 ENSG00000280263.1 processed_pseudogene AC137499.2 3 +41632 chr22 HAVANA gene 16503304 16509475 246.0 + 0 ENSG00000235969.1 unprocessed_pseudogene CHEK2P4 2 OTTHUMG00000140400.1 +41633 chr22 HAVANA gene 16521059 16527237 661.0 + 0 ENSG00000273362.1 lincRNA AP000547.2 2 OTTHUMG00000186094.1 +41634 chr22 HAVANA gene 16572027 16574637 617.0 + 0 ENSG00000233995.1 unprocessed_pseudogene AP000547.1 2 OTTHUMG00000141256.1 +41635 chr22 HAVANA gene 16575363 16582707 3389.0 - 0 ENSG00000239435.2 transcribed_unprocessed_pseudogene KCNMB3P1 2 OTTHUMG00000141303.3 +41636 chr22 HAVANA gene 16590751 16592810 2060.0 - 0 ENSG00000198445.4 protein_coding CCT8L2 2 OTTHUMG00000141302.1 +41637 chr22 HAVANA gene 16595089 16595485 397.0 - 0 ENSG00000240122.1 processed_pseudogene FABP5P11 1 OTTHUMG00000150095.1 pseudo_consens +41638 chr22 HAVANA gene 16601911 16615111 3071.0 + 0 ENSG00000283633.1 lincRNA AP000547.3 2 OTTHUMG00000141300.10 overlapping_locus +41639 chr22 HAVANA gene 16616170 16617114 546.0 + 0 ENSG00000267338.1 lincRNA AP000365.1 2 OTTHUMG00000182183.1 overlapping_locus +41640 chr22 HAVANA gene 16645695 16646581 253.0 - 0 ENSG00000249288.1 unprocessed_pseudogene SLC25A15P5 2 OTTHUMG00000142830.1 +41641 chr22 HAVANA gene 16653892 16659628 317.0 - 0 ENSG00000249263.2 transcribed_unprocessed_pseudogene PARP4P3 2 OTTHUMG00000142831.4 overlapping_locus +41642 chr22 HAVANA gene 16654066 16675540 1181.0 - 0 ENSG00000189295.13 processed_transcript ANKRD62P1-PARP4P3 2 OTTHUMG00000186061.1 overlapping_locus +41643 chr22 HAVANA gene 16671090 16679493 1623.0 - 0 ENSG00000259271.1 transcribed_unprocessed_pseudogene ANKRD62P1 2 OTTHUMG00000149993.3 overlapping_locus +41644 chr22 HAVANA gene 16676016 16694648 875.0 - 0 ENSG00000273244.1 processed_transcript AC005301.1 2 OTTHUMG00000172533.1 overlapping_locus +41645 chr22 HAVANA gene 16601887 16698742 9653.0 + 0 ENSG00000100181.22 transcribed_unprocessed_pseudogene TPTEP1 2 OTTHUMG00000191859.3 overlapping_locus +41646 chr22 HAVANA gene 16690103 16704477 2907.0 - 0 ENSG00000241717.1 transcribed_unprocessed_pseudogene VWFP1 2 OTTHUMG00000143725.1 overlapping_locus +41647 chr22 HAVANA gene 16746869 16748645 1241.0 - 0 ENSG00000235343.1 lincRNA LINC01665 2 OTTHUMG00000153504.1 +41648 chr22 HAVANA gene 16783412 16821699 1690.0 - 0 ENSG00000172967.7 protein_coding XKR3 2 OTTHUMG00000143726.1 +41649 chr22 HAVANA gene 16827474 16829335 1381.0 + 0 ENSG00000229027.3 transcribed_unprocessed_pseudogene HSFY1P1 2 OTTHUMG00000143727.3 +41650 chr22 HAVANA gene 16837522 16837666 145.0 + 0 ENSG00000234121.1 processed_pseudogene GPM6BP3 2 OTTHUMG00000144175.2 +41651 chr22 HAVANA gene 16844399 16846357 555.0 + 0 ENSG00000283535.1 unprocessed_pseudogene AC007064.4 2 OTTHUMG00000191705.2 +41652 chr22 HAVANA gene 16855804 16856162 359.0 + 0 ENSG00000237835.1 processed_pseudogene AC007064.3 2 OTTHUMG00000144176.1 +41653 chr22 HAVANA gene 16857619 16860718 3100.0 - 0 ENSG00000220248.1 processed_pseudogene ZNF402P 2 OTTHUMG00000147350.1 +41654 chr22 HAVANA gene 16869478 16871126 500.0 + 0 ENSG00000237689.1 lincRNA AC007064.2 1 OTTHUMG00000147348.1 +41655 chr22 HAVANA gene 16876218 16876421 204.0 - 0 ENSG00000228122.1 processed_pseudogene MTND1P17 2 OTTHUMG00000147347.1 +41656 chr22 HAVANA gene 16876552 16876902 351.0 - 0 ENSG00000237358.1 processed_pseudogene AC007064.1 2 OTTHUMG00000147345.1 +41657 chr22 HAVANA gene 16897445 16897546 102.0 + 0 ENSG00000225480.1 processed_pseudogene AC006548.1 2 OTTHUMG00000147346.1 +41658 chr22 HAVANA gene 16904219 16904696 354.0 - 0 ENSG00000230481.2 IG_V_pseudogene IGKV1OR22-5 1 OTTHUMG00000147349.2 pseudo_consens +41659 chr22 HAVANA gene 16914235 16914981 367.0 - 0 ENSG00000253691.2 IG_V_pseudogene IGKV2OR22-4 2 OTTHUMG00000149991.2 +41660 chr22 HAVANA gene 16921443 16922173 360.0 - 0 ENSG00000253460.2 IG_V_pseudogene IGKV2OR22-3 2 OTTHUMG00000149994.2 +41661 chr22 HAVANA gene 16925952 16926444 313.0 - 0 ENSG00000254264.2 IG_V_pseudogene IGKV3OR22-2 2 OTTHUMG00000149995.2 +41662 chr22 HAVANA gene 16933521 16934003 360.0 - 0 ENSG00000253481.2 IG_V_pseudogene IGKV1OR22-1 1 OTTHUMG00000149996.2 pseudo_consens +41663 chr22 HAVANA gene 16953895 16956808 852.0 + 0 ENSG00000285045.1 unprocessed_pseudogene AC006548.3 2 OTTHUMG00000192380.1 +41664 chr22 HAVANA gene 16961936 17008222 3747.0 - 0 ENSG00000215568.8 protein_coding GAB4 2 OTTHUMG00000149992.5 overlapping_locus +41665 chr22 HAVANA gene 17012404 17012932 529.0 + 0 ENSG00000270226.1 processed_pseudogene AC006548.2 1 OTTHUMG00000184893.1 pseudo_consens,overlapping_locus +41666 chr22 HAVANA gene 17021398 17022570 867.0 - 0 ENSG00000276400.1 processed_pseudogene VN1R9P 2 OTTHUMG00000188007.1 overlapping_locus +41667 chr22 HAVANA gene 17036570 17060825 4453.0 + 0 ENSG00000237438.7 transcribed_unprocessed_pseudogene CECR7 1 OTTHUMG00000150027.5 +41668 chr22 HAVANA gene 17067821 17070675 2855.0 + 0 ENSG00000273203.1 lincRNA AC006946.2 2 OTTHUMG00000186095.1 +41669 chr22 HAVANA gene 17080701 17081456 756.0 + 0 ENSG00000273442.1 lincRNA AC006946.3 2 OTTHUMG00000186096.1 +41670 chr22 HAVANA gene 17093612 17093939 328.0 - 0 ENSG00000235328.1 processed_pseudogene AC006946.1 1 OTTHUMG00000150025.2 pseudo_consens +41671 chr22 HAVANA gene 17084954 17115694 9036.0 + 0 ENSG00000177663.13 protein_coding IL17RA 1 OTTHUMG00000150026.1 +41672 chr22 HAVANA gene 17116299 17121367 5069.0 - 0 ENSG00000183307.3 protein_coding TMEM121B 1 OTTHUMG00000030471.5 +41673 chr22 HAVANA gene 17121586 17132104 1354.0 + 0 ENSG00000235478.4 lincRNA LINC01664 1 OTTHUMG00000153502.4 +41674 chr22 HAVANA gene 17137511 17165287 4936.0 - 0 ENSG00000069998.12 protein_coding HDHD5 1 OTTHUMG00000150071.2 +41675 chr22 HAVANA gene 17159384 17165445 631.0 + 0 ENSG00000185837.3 antisense HDHD5-AS1 1 OTTHUMG00000150096.2 +41676 chr22 HAVANA gene 17192936 17193308 373.0 + 0 ENSG00000236325.1 processed_pseudogene AC005300.1 1 OTTHUMG00000150066.1 pseudo_consens +41677 chr22 HAVANA gene 17213516 17214155 333.0 + 0 ENSG00000203416.3 processed_pseudogene FAM32BP 1 OTTHUMG00000150068.2 pseudo_consens +41678 chr22 HAVANA gene 17178790 17258235 8704.0 - 0 ENSG00000093072.16 protein_coding ADA2 1 OTTHUMG00000030726.14 overlapping_locus +41679 chr22 HAVANA gene 17256859 17266733 1915.0 - 0 ENSG00000241832.1 lincRNA CECR3 2 OTTHUMG00000150063.1 overlapping_locus +41680 chr22 HAVANA gene 17329034 17329232 199.0 + 0 ENSG00000231004.2 TEC CECR9 1 OTTHUMG00000150065.1 +41681 chr22 ENSEMBL gene 17352881 17353177 297.0 - 0 ENSG00000239547.3 misc_RNA RN7SL843P 3 +41682 chr22 HAVANA gene 17418697 17419828 1132.0 + 0 ENSG00000229492.1 processed_pseudogene FO681548.1 1 OTTHUMG00000150062.1 pseudo_consens,overlapping_locus +41683 chr22 HAVANA gene 17424388 17424775 388.0 - 0 ENSG00000232305.1 processed_pseudogene CLCP1 1 OTTHUMG00000155638.1 pseudo_consens +41684 chr22 HAVANA gene 17518676 17519029 354.0 - 0 ENSG00000228045.1 processed_pseudogene DNAJA1P6 1 OTTHUMG00000150091.1 pseudo_consens +41685 chr22 HAVANA gene 17359949 17558149 10759.0 + 0 ENSG00000099954.18 protein_coding CECR2 1 OTTHUMG00000150072.9 overlapping_locus +41686 chr22 HAVANA gene 17580157 17589192 1960.0 - 0 ENSG00000236754.5 antisense AC007666.1 1 OTTHUMG00000150092.1 +41687 chr22 HAVANA gene 17563439 17590994 4741.0 + 0 ENSG00000182902.13 protein_coding SLC25A18 2 OTTHUMG00000150089.3 +41688 chr22 HAVANA gene 17592136 17628818 3212.0 - 0 ENSG00000131100.12 protein_coding ATP6V1E1 2 OTTHUMG00000059320.5 +41689 chr22 HAVANA gene 17628855 17730855 7662.0 + 0 ENSG00000099968.17 protein_coding BCL2L13 1 OTTHUMG00000150088.3 +41690 chr22 ENSEMBL gene 17764180 17764259 80.0 - 0 ENSG00000264757.1 miRNA MIR3198-1 3 +41691 chr22 HAVANA gene 17734138 17774770 4446.0 - 0 ENSG00000015475.18 protein_coding BID 2 OTTHUMG00000150087.5 ncRNA_host +41692 chr22 HAVANA gene 17777322 17779481 2160.0 + 0 ENSG00000269220.1 lincRNA LINC00528 2 OTTHUMG00000186097.1 +41693 chr22 HAVANA gene 17787652 17811497 4328.0 - 0 ENSG00000093100.13 processed_transcript AC016026.1 1 OTTHUMG00000150085.1 overlapping_locus +41694 chr22 ENSEMBL gene 17980868 17980961 94.0 - 0 ENSG00000207780.1 miRNA MIR648 3 +41695 chr22 HAVANA gene 17983205 17983619 361.0 - 0 ENSG00000235445.1 sense_intronic AC016027.3 2 OTTHUMG00000150069.1 overlapping_locus +41696 chr22 HAVANA gene 18004270 18007308 2493.0 - 0 ENSG00000234913.1 sense_intronic AC016027.2 2 OTTHUMG00000150064.1 overlapping_locus +41697 chr22 HAVANA gene 18019214 18020200 351.0 + 0 ENSG00000237446.1 processed_pseudogene RHEBP3 2 OTTHUMG00000150061.1 +41698 chr22 HAVANA gene 17787649 18024559 22354.0 - 0 ENSG00000243156.7 protein_coding MICAL3 1 OTTHUMG00000150067.6 ncRNA_host,overlapping_locus +41699 chr22 HAVANA gene 18029385 18037968 2379.0 + 0 ENSG00000235295.1 lincRNA LINC01634 2 OTTHUMG00000153506.1 +41700 chr22 HAVANA gene 18076527 18078884 2235.0 - 0 ENSG00000225335.3 antisense AC016027.1 1 OTTHUMG00000149968.2 +41701 chr22 HAVANA gene 18081466 18081675 210.0 - 0 ENSG00000236890.2 processed_pseudogene AC016027.5 1 OTTHUMG00000150070.2 pseudo_consens +41702 chr22 HAVANA gene 18101612 18101888 277.0 + 0 ENSG00000235617.1 unprocessed_pseudogene AC016027.4 2 OTTHUMG00000150060.1 overlapping_locus +41703 chr22 HAVANA gene 18102457 18103649 531.0 - 0 ENSG00000225225.1 processed_pseudogene ARL2BPP10 2 OTTHUMG00000155640.1 +41704 chr22 HAVANA gene 18077920 18131138 20045.0 + 0 ENSG00000215193.12 protein_coding PEX26 1 OTTHUMG00000149970.5 +41705 chr22 HAVANA gene 18110759 18131154 20396.0 - 0 ENSG00000280007.1 antisense AC008079.1 2 OTTHUMG00000189278.1 +41706 chr22 HAVANA gene 18110331 18146554 3641.0 + 0 ENSG00000183785.14 protein_coding TUBA8 1 OTTHUMG00000150097.5 overlapping_locus +41707 chr22 HAVANA gene 18149899 18177397 2129.0 + 0 ENSG00000184979.9 protein_coding USP18 2 OTTHUMG00000150104.1 +41708 chr22 HAVANA gene 18178038 18205915 1859.0 - 0 ENSG00000187979.4 antisense LINC02592 2 OTTHUMG00000150103.2 +41709 chr22 HAVANA gene 18340145 18345899 998.0 + 0 ENSG00000276160.1 unprocessed_pseudogene GGTLC5P 2 OTTHUMG00000188346.1 +41710 chr22 HAVANA gene 18374106 18375689 375.0 + 0 ENSG00000276874.1 lincRNA AC011718.1 2 OTTHUMG00000188348.1 +41711 chr22 HAVANA gene 18361823 18391105 4606.0 - 0 ENSG00000274044.4 lincRNA LINC01660 2 OTTHUMG00000188347.1 +41712 chr22 HAVANA gene 18400407 18404206 3800.0 - 0 ENSG00000275060.1 unprocessed_pseudogene PPP1R26P3 2 OTTHUMG00000188349.1 +41713 chr22 HAVANA gene 18486999 18491247 1079.0 - 0 ENSG00000277017.1 lincRNA AC023490.1 2 OTTHUMG00000188350.1 +41714 chr22 HAVANA gene 18422244 18500594 3580.0 + 0 ENSG00000277870.5 lincRNA FAM230A 2 OTTHUMG00000189114.4 +41715 chr22 HAVANA gene 18501794 18512187 358.0 - 0 ENSG00000278044.1 lincRNA AC023490.3 2 OTTHUMG00000188351.1 +41716 chr22 HAVANA gene 18516344 18518161 968.0 - 0 ENSG00000274252.1 protein_coding GGTLC3 2 OTTHUMG00000188352.1 +41717 chr22 ENSEMBL gene 18524620 18524935 316.0 + 0 ENSG00000275319.1 misc_RNA RF00017 3 +41718 chr22 HAVANA gene 18527157 18527626 470.0 + 0 ENSG00000277690.2 processed_pseudogene AC023490.2 2 OTTHUMG00000189496.1 +41719 chr22 HAVANA gene 18527802 18530573 2067.0 + 0 ENSG00000278558.4 protein_coding TMEM191B 2 OTTHUMG00000188353.2 +41720 chr22 HAVANA gene 18533646 18577968 4812.0 - 0 ENSG00000274602.4 transcribed_unprocessed_pseudogene PI4KAP1 2 OTTHUMG00000188354.2 +41721 chr22 ENSEMBL gene 18605355 18605497 143.0 + 0 ENSG00000274625.1 scaRNA RF00492 3 +41722 chr22 ENSEMBL gene 18605802 18606102 301.0 - 0 ENSG00000222630.2 misc_RNA RN7SKP131 3 +41723 chr22 HAVANA gene 18605815 18611919 6105.0 - 0 ENSG00000275793.1 protein_coding RIMBP3 2 OTTHUMG00000188355.1 retrogene +41724 chr22 ENSEMBL gene 18615581 18615900 320.0 + 0 ENSG00000275362.1 misc_RNA RF00017 3 +41725 chr22 HAVANA gene 18623339 18625289 758.0 - 0 ENSG00000278110.1 unprocessed_pseudogene SUSD2P2 2 OTTHUMG00000188356.1 +41726 chr22 HAVANA gene 18636445 18638405 834.0 - 0 ENSG00000273907.1 unprocessed_pseudogene CA15P2 2 OTTHUMG00000188357.1 +41727 chr22 HAVANA gene 18650023 18653617 3595.0 - 0 ENSG00000273643.1 processed_pseudogene PPP1R26P2 2 OTTHUMG00000188358.1 +41728 chr22 HAVANA gene 18715815 18719341 3527.0 + 0 ENSG00000278008.1 processed_pseudogene PPP1R26P4 2 OTTHUMG00000188024.1 +41729 chr22 HAVANA gene 18733914 18757906 2990.0 + 0 ENSG00000182824.7 lincRNA LINC01662 2 OTTHUMG00000187471.1 +41730 chr22 HAVANA gene 18794414 18794804 391.0 - 0 ENSG00000239989.1 transcribed_processed_pseudogene AC008132.2 2 OTTHUMG00000155694.1 overlapping_locus +41731 chr22 HAVANA gene 18833694 18834438 745.0 + 0 ENSG00000234764.2 processed_pseudogene E2F6P1 1 OTTHUMG00000150178.2 pseudo_consens +41732 chr22 HAVANA gene 18773665 18843399 2744.0 - 0 ENSG00000197421.9 transcribed_unprocessed_pseudogene GGT3P 2 OTTHUMG00000150161.2 overlapping_locus +41733 chr22 HAVANA gene 18855621 18858640 544.0 - 0 ENSG00000215544.6 unprocessed_pseudogene BCRP7 2 OTTHUMG00000030708.4 +41734 chr22 HAVANA gene 18846811 18861049 7689.0 + 0 ENSG00000161103.11 transcribed_processed_pseudogene AC008132.1 2 OTTHUMG00000150176.3 +41735 chr22 HAVANA gene 18883502 18884682 1181.0 - 0 ENSG00000279987.1 sense_intronic AC008103.1 2 OTTHUMG00000189176.1 overlapping_locus +41736 chr22 HAVANA gene 18873543 18894407 535.0 - 0 ENSG00000276095.2 lincRNA LINC01663 2 OTTHUMG00000188102.2 overlapping_locus +41737 chr22 HAVANA gene 18906028 18914238 5262.0 + 0 ENSG00000183628.12 protein_coding DGCR6 2 OTTHUMG00000150162.4 overlapping_locus +41738 chr22 HAVANA gene 18912777 18936553 8776.0 - 0 ENSG00000100033.16 protein_coding PRODH 2 OTTHUMG00000150163.5 +41739 chr22 HAVANA gene 18906238 18947732 1669.0 + 0 ENSG00000283809.1 protein_coding AC007326.4 2 OTTHUMG00000192094.1 overlapping_locus +41740 chr22 HAVANA gene 18936411 18947741 1664.0 + 0 ENSG00000284294.1 processed_transcript AC007326.5 2 OTTHUMG00000189196.3 overlapping_locus +41741 chr22 HAVANA gene 18951934 18959512 7579.0 - 0 ENSG00000280418.1 lincRNA AC007326.2 2 OTTHUMG00000189175.1 +41742 chr22 HAVANA gene 18980695 18981325 176.0 - 0 ENSG00000283583.1 unprocessed_pseudogene AC007326.3 2 OTTHUMG00000191821.1 +41743 chr22 HAVANA gene 18970514 18994628 5676.0 + 0 ENSG00000237517.9 transcribed_unprocessed_pseudogene DGCR5 1 OTTHUMG00000191820.1 overlapping_locus +41744 chr22 HAVANA gene 18997138 18997595 458.0 - 0 ENSG00000271275.1 processed_pseudogene AC007326.1 1 OTTHUMG00000184895.1 pseudo_consens +41745 chr22 HAVANA gene 19014353 19014506 154.0 + 0 ENSG00000283366.2 transcribed_unprocessed_pseudogene AC000095.2 2 OTTHUMG00000191822.1 overlapping_locus +41746 chr22 HAVANA gene 19018043 19018916 874.0 - 0 ENSG00000270393.1 processed_pseudogene AC000095.1 1 OTTHUMG00000184897.1 pseudo_consens +41747 chr22 HAVANA gene 19023056 19023550 495.0 + 0 ENSG00000273164.1 sense_intronic DGCR10 2 OTTHUMG00000186099.1 overlapping_locus +41748 chr22 HAVANA gene 18970525 19031242 4911.0 + 0 ENSG00000273032.2 processed_transcript DGCR9 2 OTTHUMG00000149977.6 overlapping_locus +41749 chr22 HAVANA gene 19031564 19034564 905.0 - 0 ENSG00000241527.1 unitary_pseudogene CA15P1 2 OTTHUMG00000157581.1 +41750 chr22 ENSEMBL gene 19045256 19045367 112.0 + 0 ENSG00000206739.1 misc_RNA RF00019 3 +41751 chr22 HAVANA gene 19046162 19048375 2214.0 - 0 ENSG00000273311.1 sense_intronic DGCR11 2 OTTHUMG00000186100.1 overlapping_locus +41752 chr22 HAVANA gene 19055801 19056512 403.0 + 0 ENSG00000237347.2 processed_pseudogene AC004461.1 1 OTTHUMG00000150140.2 pseudo_consens +41753 chr22 HAVANA gene 19061041 19061843 803.0 - 0 ENSG00000281530.1 sense_intronic AC004461.2 2 OTTHUMG00000189728.1 +41754 chr22 HAVANA gene 19036282 19122454 5605.0 - 0 ENSG00000070413.19 protein_coding DGCR2 2 OTTHUMG00000150141.2 overlapping_locus +41755 chr22 HAVANA gene 19121529 19124503 582.0 + 0 ENSG00000223461.1 antisense AC004471.1 2 OTTHUMG00000150139.1 +41756 chr22 HAVANA gene 19124879 19125646 768.0 + 0 ENSG00000231086.1 unitary_pseudogene TSSK1A 1 OTTHUMG00000150125.2 pseudo_consens +41757 chr22 HAVANA gene 19124309 19128449 1514.0 - 0 ENSG00000272682.1 lincRNA AC004471.2 2 OTTHUMG00000186185.2 +41758 chr22 HAVANA gene 19130808 19132623 1816.0 + 0 ENSG00000206203.4 protein_coding TSSK2 2 OTTHUMG00000150118.1 retrogene +41759 chr22 HAVANA gene 19130279 19144684 6003.0 - 0 ENSG00000100056.11 protein_coding ESS2 2 OTTHUMG00000150119.5 +41760 chr22 HAVANA gene 19148576 19150283 1033.0 - 0 ENSG00000063515.2 protein_coding GSC2 2 OTTHUMG00000150122.2 +41761 chr22 HAVANA gene 19171395 19172839 1445.0 + 0 ENSG00000260924.2 antisense LINC01311 2 OTTHUMG00000172740.2 +41762 chr22 HAVANA gene 19175575 19178830 2096.0 - 0 ENSG00000100075.9 protein_coding SLC25A1 2 OTTHUMG00000150123.3 +41763 chr22 HAVANA gene 19238443 19238739 297.0 - 0 ENSG00000230194.1 processed_pseudogene AC000081.1 1 OTTHUMG00000150110.1 pseudo_consens,overlapping_locus +41764 chr22 ENSEMBL gene 19249873 19249966 94.0 + 0 ENSG00000251940.1 snoRNA RF00398 3 +41765 chr22 HAVANA gene 19257520 19258806 1287.0 + 0 ENSG00000233471.2 processed_pseudogene KRT18P62 1 OTTHUMG00000150111.1 pseudo_consens +41766 chr22 HAVANA gene 19179473 19291716 10049.0 - 0 ENSG00000070371.15 protein_coding CLTCL1 2 OTTHUMG00000150109.10 overlapping_locus +41767 chr22 ENSEMBL gene 19365766 19366044 279.0 + 0 ENSG00000244296.3 misc_RNA RN7SL168P 3 +41768 chr22 HAVANA gene 19431902 19436075 1965.0 + 0 ENSG00000185608.8 protein_coding MRPL40 2 OTTHUMG00000150136.3 +41769 chr22 HAVANA gene 19330698 19447450 4299.0 - 0 ENSG00000100084.14 protein_coding HIRA 2 OTTHUMG00000150134.5 overlapping_locus +41770 chr22 HAVANA gene 19351368 19448232 6943.0 - 0 ENSG00000242259.8 protein_coding C22orf39 2 OTTHUMG00000150137.4 overlapping_locus +41771 chr22 HAVANA gene 19447893 19450105 2097.0 + 0 ENSG00000185065.6 antisense AC000068.1 2 OTTHUMG00000150135.1 +41772 chr22 HAVANA gene 19454179 19454605 427.0 + 0 ENSG00000273300.1 antisense AC000068.3 2 OTTHUMG00000186101.1 +41773 chr22 HAVANA gene 19456503 19456962 460.0 + 0 ENSG00000273212.1 antisense AC000068.2 2 OTTHUMG00000186102.1 +41774 chr22 HAVANA gene 19449910 19479215 8736.0 - 0 ENSG00000070010.18 protein_coding UFD1 1 OTTHUMG00000150130.15 +41775 chr22 HAVANA gene 19479459 19520612 2846.0 + 0 ENSG00000093009.9 protein_coding CDC45 1 OTTHUMG00000150386.2 +41776 chr22 HAVANA gene 19523024 19527545 3429.0 - 0 ENSG00000184113.9 protein_coding CLDN5 2 OTTHUMG00000150441.5 retrogene +41777 chr22 HAVANA gene 19565203 19566839 1637.0 - 0 ENSG00000281548.1 lincRNA LINC00895 2 OTTHUMG00000189517.1 +41778 chr22 HAVANA gene 19630750 19633574 953.0 - 0 ENSG00000230485.1 processed_pseudogene AC000077.1 2 OTTHUMG00000150438.1 +41779 chr22 HAVANA gene 19667023 19667555 287.0 + 0 ENSG00000225007.1 lincRNA AC000067.1 1 OTTHUMG00000150429.1 +41780 chr22 HAVANA gene 19714464 19724224 4603.0 + 0 ENSG00000184702.19 protein_coding SEPT5 2 OTTHUMG00000150399.8 overlapping_locus +41781 chr22 HAVANA gene 19722945 19724771 1553.0 + 0 ENSG00000203618.5 protein_coding GP1BB 2 OTTHUMG00000150397.2 overlapping_locus +41782 chr22 HAVANA gene 19717220 19724772 4669.0 + 0 ENSG00000284874.1 protein_coding SEPT5-GP1BB 2 OTTHUMG00000192396.1 overlapping_locus +41783 chr22 HAVANA gene 19756703 19783593 3496.0 + 0 ENSG00000184058.14 protein_coding TBX1 2 OTTHUMG00000150421.4 +41784 chr22 HAVANA gene 19792294 19793094 801.0 + 0 ENSG00000235776.2 processed_pseudogene AC000089.1 1 OTTHUMG00000150618.2 pseudo_consens +41785 chr22 HAVANA gene 19846138 19854896 6803.0 - 0 ENSG00000215012.8 protein_coding RTL10 2 OTTHUMG00000030314.5 overlapping_locus +41786 chr22 HAVANA gene 19783224 19854939 6988.0 - 0 ENSG00000185838.13 protein_coding GNB1L 2 OTTHUMG00000150279.3 overlapping_locus +41787 chr22 HAVANA gene 19887289 19887970 682.0 + 0 ENSG00000232926.1 processed_pseudogene AC000078.1 1 OTTHUMG00000150619.2 pseudo_consens +41788 chr22 HAVANA gene 19875517 19941992 8373.0 - 0 ENSG00000184470.20 protein_coding TXNRD2 2 OTTHUMG00000149975.7 +41789 chr22 ENSEMBL gene 19963753 19963834 82.0 + 0 ENSG00000284031.1 miRNA MIR4761 3 +41790 chr22 HAVANA gene 19941607 19969975 5195.0 + 0 ENSG00000093010.13 protein_coding COMT 1 OTTHUMG00000150529.8 ncRNA_host +41791 chr22 HAVANA gene 19969896 20016808 5621.0 - 0 ENSG00000099889.13 protein_coding ARVCF 1 OTTHUMG00000030426.9 +41792 chr22 ENSEMBL gene 20033139 20033220 82.0 + 0 ENSG00000208023.3 miRNA MIR185 3 +41793 chr22 HAVANA gene 20064552 20065705 583.0 - 0 ENSG00000268292.1 antisense AC006547.3 2 OTTHUMG00000182465.1 overlapping_locus +41794 chr22 HAVANA gene 20017014 20065926 6157.0 + 0 ENSG00000183597.15 protein_coding TANGO2 2 OTTHUMG00000150510.25 ncRNA_host +41795 chr22 HAVANA gene 20058030 20070569 2267.0 - 0 ENSG00000236540.7 antisense AC006547.1 1 OTTHUMG00000150731.5 overlapping_locus +41796 chr22 ENSEMBL gene 20070716 20070965 250.0 + 0 ENSG00000277950.1 misc_RNA RF00017 3 +41797 chr22 ENSEMBL gene 20085746 20085833 88.0 + 0 ENSG00000284140.1 miRNA MIR3618 3 +41798 chr22 ENSEMBL gene 20086058 20086142 85.0 + 0 ENSG00000284464.1 miRNA MIR1306 3 +41799 chr22 HAVANA gene 20110821 20111875 526.0 - 0 ENSG00000243762.1 antisense AC006547.2 2 OTTHUMG00000150489.2 overlapping_locus +41800 chr22 HAVANA gene 20080232 20111877 7315.0 + 0 ENSG00000128191.15 protein_coding DGCR8 2 OTTHUMG00000150503.3 ncRNA_host +41801 chr22 ENSEMBL gene 20114686 20114751 66.0 - 0 ENSG00000278278.1 miRNA MIR6816 3 +41802 chr22 HAVANA gene 20111866 20117392 3963.0 - 0 ENSG00000099899.14 protein_coding TRMT2A 2 OTTHUMG00000150454.11 ncRNA_host,overlapping_locus +41803 chr22 ENSEMBL gene 20126402 20126526 125.0 + 0 ENSG00000264346.1 snoRNA RF00599 3 +41804 chr22 HAVANA gene 20115938 20127357 4622.0 + 0 ENSG00000099901.16 protein_coding RANBP1 1 OTTHUMG00000150490.33 ncRNA_host +41805 chr22 HAVANA gene 20129456 20148007 5542.0 + 0 ENSG00000099904.15 protein_coding ZDHHC8 1 OTTHUMG00000150499.4 +41806 chr22 HAVANA gene 20148427 20151065 1598.0 - 0 ENSG00000234409.6 protein_coding CCDC188 1 OTTHUMG00000150751.5 +41807 chr22 HAVANA gene 20198729 20204918 2228.0 - 0 ENSG00000249923.1 antisense AC007663.2 2 OTTHUMG00000150567.4 +41808 chr22 HAVANA gene 20206397 20208524 2128.0 + 0 ENSG00000236499.2 lincRNA LINC00896 2 OTTHUMG00000186112.1 +41809 chr22 ENSEMBL gene 20249134 20249211 78.0 - 0 ENSG00000221039.3 miRNA MIR1286 3 +41810 chr22 HAVANA gene 20241415 20283246 3339.0 - 0 ENSG00000040608.13 protein_coding RTN4R 1 OTTHUMG00000150572.2 ncRNA_host +41811 chr22 HAVANA gene 20299760 20313216 1240.0 + 0 ENSG00000161132.6 unprocessed_pseudogene AC007663.1 2 OTTHUMG00000150582.2 +41812 chr22 HAVANA gene 20318119 20318749 631.0 - 0 ENSG00000273343.1 sense_intronic AC007663.4 2 OTTHUMG00000186113.1 overlapping_locus +41813 chr22 HAVANA gene 20314276 20320080 1154.0 - 0 ENSG00000128185.9 protein_coding DGCR6L 2 OTTHUMG00000150583.3 overlapping_locus +41814 chr22 HAVANA gene 20320739 20321203 465.0 + 0 ENSG00000273139.1 lincRNA AC007663.3 2 OTTHUMG00000186114.1 +41815 chr22 HAVANA gene 20343203 20344365 446.0 - 0 ENSG00000235578.1 lincRNA AC007731.3 1 OTTHUMG00000150605.1 +41816 chr22 HAVANA gene 20338805 20354372 2256.0 + 0 ENSG00000188280.11 antisense AC007731.1 1 OTTHUMG00000150686.6 +41817 chr22 HAVANA gene 20350578 20390758 1592.0 - 0 ENSG00000161133.16 protein_coding USP41 2 OTTHUMG00000151317.5 +41818 chr22 HAVANA gene 20394115 20408461 6251.0 + 0 ENSG00000185252.18 protein_coding ZNF74 1 OTTHUMG00000150687.4 +41819 chr22 ENSEMBL gene 20416797 20416899 103.0 - 0 ENSG00000207343.1 snRNA RNU6-225P 3 +41820 chr22 HAVANA gene 20424815 20437826 3341.0 - 0 ENSG00000244486.8 protein_coding SCARF2 2 OTTHUMG00000150779.5 overlapping_locus +41821 chr22 HAVANA gene 20429241 20446620 644.0 - 0 ENSG00000277971.1 protein_coding AC007731.5 2 OTTHUMG00000150778.43 overlapping_locus +41822 chr22 HAVANA gene 20450122 20451824 1703.0 + 0 ENSG00000215493.3 processed_pseudogene AC007731.2 1 OTTHUMG00000151320.1 pseudo_consens +41823 chr22 ENSEMBL gene 20475203 20475311 109.0 - 0 ENSG00000255156.1 misc_RNA RNY1P9 3 +41824 chr22 ENSEMBL gene 20481158 20481268 111.0 + 0 ENSG00000201916.1 misc_RNA RF00019 3 +41825 chr22 ENSEMBL gene 20481935 20482213 279.0 - 0 ENSG00000242876.3 misc_RNA RN7SL812P 3 +41826 chr22 HAVANA gene 20482815 20484105 1291.0 - 0 ENSG00000236670.1 processed_pseudogene KRT18P5 1 OTTHUMG00000150808.1 pseudo_consens,overlapping_locus +41827 chr22 HAVANA gene 20441519 20495883 4646.0 - 0 ENSG00000099910.16 protein_coding KLHL22 1 OTTHUMG00000188269.2 ncRNA_host,overlapping_locus +41828 chr22 HAVANA gene 20522070 20523870 652.0 - 0 ENSG00000236003.1 antisense AC007731.4 1 OTTHUMG00000150842.1 +41829 chr22 HAVANA gene 20495913 20587632 10374.0 + 0 ENSG00000099917.17 protein_coding MED15 2 OTTHUMG00000150810.9 +41830 chr22 HAVANA gene 20587496 20592218 1123.0 - 0 ENSG00000250261.1 unprocessed_pseudogene CCDC74BP1 2 OTTHUMG00000150880.1 +41831 chr22 HAVANA gene 20632619 20632751 133.0 + 0 ENSG00000276427.1 unprocessed_pseudogene IGLL4P 2 OTTHUMG00000188038.1 +41832 chr22 HAVANA gene 20652730 20654750 2021.0 + 0 ENSG00000238125.1 processed_pseudogene SLC9A3P2 1 OTTHUMG00000150753.1 pseudo_consens +41833 chr22 HAVANA gene 20602595 20656914 3971.0 - 0 ENSG00000223553.6 transcribed_unprocessed_pseudogene SMPD4P1 1 OTTHUMG00000030245.6 pseudo_consens +41834 chr22 HAVANA gene 20667836 20670984 909.0 - 0 ENSG00000229107.2 processed_pseudogene ABHD17AP4 1 OTTHUMG00000150752.1 pseudo_consens +41835 chr22 HAVANA gene 20697962 20698934 253.0 - 0 ENSG00000235062.4 unprocessed_pseudogene BCRP5 2 OTTHUMG00000150757.1 +41836 chr22 HAVANA gene 20689929 20698938 1891.0 + 0 ENSG00000217261.4 transcribed_unprocessed_pseudogene POM121L4P 1 OTTHUMG00000150756.2 pseudo_consens +41837 chr22 HAVANA gene 20701114 20704606 2707.0 + 0 ENSG00000226287.8 transcribed_unprocessed_pseudogene TMEM191A 2 OTTHUMG00000150164.3 +41838 chr22 HAVANA gene 20773879 20787720 2553.0 + 0 ENSG00000099937.10 protein_coding SERPIND1 2 OTTHUMG00000150755.1 +41839 chr22 HAVANA gene 20707691 20859417 11407.0 - 0 ENSG00000241973.10 protein_coding PI4KA 1 OTTHUMG00000167440.3 +41840 chr22 HAVANA gene 20889206 20891214 373.0 - 0 ENSG00000272600.1 antisense AC007308.1 2 OTTHUMG00000186194.1 +41841 chr22 HAVANA gene 20858983 20891218 4953.0 + 0 ENSG00000099940.11 protein_coding SNAP29 1 OTTHUMG00000150765.6 +41842 chr22 HAVANA gene 20917426 20953749 5325.0 + 0 ENSG00000099942.12 protein_coding CRKL 2 OTTHUMG00000150807.1 +41843 chr22 HAVANA gene 20957092 20964679 684.0 + 0 ENSG00000237476.1 lincRNA LINC01637 1 OTTHUMG00000150805.1 +41844 chr22 HAVANA gene 20965108 20981360 5401.0 + 0 ENSG00000183773.15 protein_coding AIFM3 2 OTTHUMG00000150804.6 overlapping_locus +41845 chr22 HAVANA gene 20981361 20981755 395.0 - 0 ENSG00000272829.1 lincRNA AC002470.1 2 OTTHUMG00000186195.1 +41846 chr22 HAVANA gene 20979462 20998121 3442.0 + 0 ENSG00000285314.1 processed_transcript AC002470.2 2 OTTHUMG00000192616.1 overlapping_locus +41847 chr22 HAVANA gene 20982013 20999038 8935.0 + 0 ENSG00000099949.19 protein_coding LZTR1 2 OTTHUMG00000150878.6 overlapping_locus +41848 chr22 HAVANA gene 20999104 21002196 2879.0 - 0 ENSG00000184436.11 protein_coding THAP7 2 OTTHUMG00000150879.1 +41849 chr22 HAVANA gene 21002895 21009453 958.0 - 0 ENSG00000284060.1 transcribed_unprocessed_pseudogene AC002472.2 2 OTTHUMG00000191956.1 overlapping_locus +41850 chr22 HAVANA gene 21001886 21010342 2975.0 + 0 ENSG00000230513.1 antisense THAP7-AS1 2 OTTHUMG00000150877.1 overlapping_locus +41851 chr22 HAVANA gene 21011384 21014217 621.0 - 0 ENSG00000284130.1 transcribed_unprocessed_pseudogene AC002472.3 2 OTTHUMG00000191957.15 overlapping_locus +41852 chr22 HAVANA gene 21008193 21014292 2122.0 - 0 ENSG00000161149.12 processed_transcript TUBA3FP 2 OTTHUMG00000150876.15 overlapping_locus +41853 chr22 HAVANA gene 21009808 21028830 4730.0 + 0 ENSG00000099957.16 protein_coding P2RX6 2 OTTHUMG00000150689.3 overlapping_locus +41854 chr22 HAVANA gene 21028718 21032840 2447.0 - 0 ENSG00000099960.12 protein_coding SLC7A4 2 OTTHUMG00000150896.2 +41855 chr22 ENSEMBL gene 21034176 21034272 97.0 - 0 ENSG00000207575.1 miRNA MIR649 3 +41856 chr22 HAVANA gene 21031357 21043969 563.0 + 0 ENSG00000226872.1 antisense AC002472.1 2 OTTHUMG00000150899.2 +41857 chr22 HAVANA gene 21035243 21045017 551.0 - 0 ENSG00000206145.8 transcribed_unprocessed_pseudogene P2RX6P 2 OTTHUMG00000150898.1 +41858 chr22 HAVANA gene 21045960 21064168 5542.0 + 0 ENSG00000187905.10 protein_coding LRRC74B 2 OTTHUMG00000150897.4 +41859 chr22 HAVANA gene 21065462 21070097 1325.0 + 0 ENSG00000249680.2 unprocessed_pseudogene TUBA3GP 2 OTTHUMG00000150926.2 +41860 chr22 HAVANA gene 21071082 21081018 272.0 - 0 ENSG00000284665.1 unprocessed_pseudogene AC002472.4 2 OTTHUMG00000192345.1 +41861 chr22 HAVANA gene 21103016 21122285 5447.0 + 0 ENSG00000169668.11 transcribed_unprocessed_pseudogene BCRP2 2 OTTHUMG00000150627.5 +41862 chr22 HAVANA gene 21114607 21124451 4833.0 - 0 ENSG00000197210.7 lincRNA AP000550.1 2 OTTHUMG00000150927.1 +41863 chr22 HAVANA gene 21125660 21128063 2404.0 - 0 ENSG00000239511.2 processed_pseudogene POM121L7P 2 OTTHUMG00000150783.1 +41864 chr22 HAVANA gene 21141624 21142371 748.0 - 0 ENSG00000224688.1 processed_pseudogene E2F6P2 1 OTTHUMG00000150785.2 pseudo_consens +41865 chr22 HAVANA gene 21177892 21179875 774.0 - 0 ENSG00000234503.1 lincRNA AP000550.2 2 OTTHUMG00000150794.1 +41866 chr22 HAVANA gene 21167758 21192156 6393.0 + 0 ENSG00000215498.9 processed_transcript FAM230B 2 OTTHUMG00000150782.3 +41867 chr22 HAVANA gene 21193360 21203755 358.0 - 0 ENSG00000283972.1 transcribed_unprocessed_pseudogene AP000550.4 2 OTTHUMG00000192198.1 +41868 chr22 HAVANA gene 21207973 21227637 2367.0 - 0 ENSG00000133475.17 protein_coding GGT2 1 OTTHUMG00000150617.6 +41869 chr22 HAVANA gene 21228760 21229138 379.0 - 0 ENSG00000283145.1 unprocessed_pseudogene AP000550.3 2 OTTHUMG00000191745.1 +41870 chr22 HAVANA gene 21268161 21268903 743.0 + 0 ENSG00000226885.1 processed_pseudogene E2F6P3 1 OTTHUMG00000150760.1 pseudo_consens +41871 chr22 HAVANA gene 21282881 21284161 1281.0 + 0 ENSG00000229266.1 processed_pseudogene POM121L8P 1 OTTHUMG00000150759.1 pseudo_consens +41872 chr22 HAVANA gene 21290760 21294586 632.0 - 0 ENSG00000169662.8 unprocessed_pseudogene BCRP6 2 OTTHUMG00000150784.2 +41873 chr22 HAVANA gene 21312920 21314904 775.0 + 0 ENSG00000237407.1 lincRNA AP000552.3 2 OTTHUMG00000150793.1 +41874 chr22 HAVANA gene 21300990 21325042 6336.0 - 0 ENSG00000206142.9 lincRNA AP000552.1 2 OTTHUMG00000150795.1 +41875 chr22 HAVANA gene 21341595 21345258 3664.0 + 0 ENSG00000232771.2 processed_pseudogene PPP1R26P5 2 OTTHUMG00000150826.3 +41876 chr22 HAVANA gene 21354563 21355763 350.0 + 0 ENSG00000279920.1 lincRNA LINC01651 2 OTTHUMG00000189206.1 +41877 chr22 HAVANA gene 21370064 21371945 689.0 + 0 ENSG00000226534.1 processed_pseudogene AP000552.2 2 OTTHUMG00000150824.1 +41878 chr22 ENSEMBL gene 21379382 21379701 320.0 - 0 ENSG00000273846.1 misc_RNA RF00017 3 +41879 chr22 HAVANA gene 21383374 21389478 6105.0 + 0 ENSG00000274600.1 protein_coding RIMBP3B 2 OTTHUMG00000150819.2 retrogene +41880 chr22 ENSEMBL gene 21389191 21389491 301.0 + 0 ENSG00000200057.1 misc_RNA RN7SKP63 3 +41881 chr22 ENSEMBL gene 21389796 21389938 143.0 - 0 ENSG00000252020.1 scaRNA RF00492 3 +41882 chr22 ENSEMBL gene 21396273 21396590 318.0 - 0 ENSG00000275840.1 misc_RNA RF00017 3 +41883 chr22 HAVANA gene 21417404 21451463 7219.0 + 0 ENSG00000169635.9 protein_coding HIC2 2 OTTHUMG00000150781.3 +41884 chr22 ENSEMBL gene 21463963 21464279 317.0 + 0 ENSG00000276800.1 misc_RNA RF00017 3 +41885 chr22 HAVANA gene 21466423 21471269 4299.0 + 0 ENSG00000206140.10 protein_coding TMEM191C 1 OTTHUMG00000150780.2 +41886 chr22 HAVANA gene 21473000 21517533 7474.0 - 0 ENSG00000183506.17 transcribed_unitary_pseudogene PI4KAP2 2 OTTHUMG00000150827.5 +41887 chr22 ENSEMBL gene 21544897 21545039 143.0 + 0 ENSG00000252143.1 scaRNA RF00492 3 +41888 chr22 ENSEMBL gene 21545344 21545644 301.0 - 0 ENSG00000222352.1 misc_RNA RN7SKP221 3 +41889 chr22 HAVANA gene 21545357 21551461 6105.0 - 0 ENSG00000183246.6 protein_coding RIMBP3C 2 OTTHUMG00000150825.1 retrogene +41890 chr22 ENSEMBL gene 21555138 21555457 320.0 + 0 ENSG00000275293.1 misc_RNA RF00017 3 +41891 chr22 HAVANA gene 21549447 21624034 3838.0 + 0 ENSG00000185651.14 protein_coding UBE2L3 2 OTTHUMG00000150823.2 ncRNA_host +41892 chr22 HAVANA gene 21628089 21630064 1754.0 - 0 ENSG00000161179.13 protein_coding YDJC 2 OTTHUMG00000150822.1 +41893 chr22 HAVANA gene 21632716 21637327 2949.0 + 0 ENSG00000161180.10 protein_coding CCDC116 2 OTTHUMG00000150821.3 +41894 chr22 HAVANA gene 21640844 21641284 441.0 + 0 ENSG00000273342.1 lincRNA AP000553.3 2 OTTHUMG00000186182.1 +41895 chr22 HAVANA gene 21642261 21644298 1099.0 + 0 ENSG00000128228.4 protein_coding SDF2L1 2 OTTHUMG00000150820.1 +41896 chr22 ENSEMBL gene 21652981 21653058 78.0 + 0 ENSG00000212102.1 miRNA MIR301B 3 +41897 chr22 ENSEMBL gene 21653304 21653385 82.0 + 0 ENSG00000283871.1 miRNA MIR130B 3 +41898 chr22 HAVANA gene 21657811 21661021 471.0 + 0 ENSG00000284630.1 transcribed_unitary_pseudogene AP000553.5 2 OTTHUMG00000030174.17 overlapping_locus +41899 chr22 HAVANA gene 21661242 21661295 54.0 - 0 ENSG00000284651.1 unitary_pseudogene AP000553.6 2 OTTHUMG00000192264.1 +41900 chr22 HAVANA gene 21661476 21661593 118.0 - 0 ENSG00000284654.1 unitary_pseudogene AP000553.7 2 OTTHUMG00000192265.1 +41901 chr22 HAVANA gene 21661859 21661929 71.0 - 0 ENSG00000284621.1 unitary_pseudogene AP000553.4 2 OTTHUMG00000192266.1 +41902 chr22 HAVANA gene 21661934 21662363 430.0 + 0 ENSG00000272954.1 sense_intronic AP000553.2 2 OTTHUMG00000186183.1 overlapping_locus +41903 chr22 HAVANA gene 21652270 21670237 1093.0 + 0 ENSG00000207751.3 processed_transcript AP000553.1 2 OTTHUMG00000191660.1 ncRNA_host,overlapping_locus +41904 chr22 HAVANA gene 21666009 21700015 7669.0 + 0 ENSG00000100023.18 protein_coding PPIL2 2 OTTHUMG00000191763.1 overlapping_locus +41905 chr22 ENSEMBL gene 21722895 21723182 288.0 - 0 ENSG00000244671.3 misc_RNA RN7SL280P 3 +41906 chr22 HAVANA gene 21697544 21735834 4713.0 - 0 ENSG00000100027.14 protein_coding YPEL1 2 OTTHUMG00000150830.1 ncRNA_host +41907 chr22 ENSEMBL gene 21792434 21792524 91.0 + 0 ENSG00000200985.1 rRNA_pseudogene RNA5SP493 3 +41908 chr22 HAVANA gene 21754500 21867680 11336.0 - 0 ENSG00000100030.14 protein_coding MAPK1 1 OTTHUMG00000030508.2 +41909 chr22 HAVANA gene 21885282 21885673 392.0 - 0 ENSG00000225544.1 processed_pseudogene AC245452.2 1 OTTHUMG00000150829.1 pseudo_consens +41910 chr22 HAVANA gene 21919420 21952837 10083.0 - 0 ENSG00000100034.13 protein_coding PPM1F 1 OTTHUMG00000150835.12 +41911 chr22 HAVANA gene 21938293 21977632 37852.0 + 0 ENSG00000224086.5 antisense AC245452.1 2 OTTHUMG00000153510.2 +41912 chr22 HAVANA gene 21957025 21982816 6641.0 - 0 ENSG00000100038.19 protein_coding TOP3B 2 OTTHUMG00000167438.2 +41913 chr22 HAVANA gene 22026076 22026593 390.0 + 0 ENSG00000253239.1 IG_V_pseudogene IGLVI-70 2 OTTHUMG00000150834.1 +41914 chr22 HAVANA gene 22030934 22031472 419.0 + 0 ENSG00000211637.2 IG_V_gene IGLV4-69 2 OTTHUMG00000150857.2 +41915 chr22 HAVANA gene 22032745 22033194 345.0 + 0 ENSG00000254355.1 IG_V_pseudogene IGLVI-68 2 OTTHUMG00000150853.1 +41916 chr22 HAVANA gene 22038643 22039126 375.0 + 0 ENSG00000249333.1 unprocessed_pseudogene AC245452.4 2 OTTHUMG00000150863.1 overlapping_locus +41917 chr22 HAVANA gene 22036344 22040065 780.0 + 0 ENSG00000278657.1 lincRNA AC245452.5 2 OTTHUMG00000150859.2 overlapping_locus +41918 chr22 HAVANA gene 21991099 22043934 3039.0 - 0 ENSG00000197549.9 transcribed_unprocessed_pseudogene PRAMENP 1 OTTHUMG00000150836.4 +41919 chr22 HAVANA gene 22043618 22043942 325.0 + 0 ENSG00000253794.1 IG_V_pseudogene IGLV10-67 2 OTTHUMG00000150849.1 +41920 chr22 HAVANA gene 22046430 22046591 162.0 + 0 ENSG00000228161.1 unprocessed_pseudogene AC245452.3 2 OTTHUMG00000150860.2 +41921 chr22 HAVANA gene 22058433 22058892 460.0 + 0 ENSG00000253874.1 IG_V_pseudogene IGLVIV-66-1 2 OTTHUMG00000150862.1 +41922 chr22 HAVANA gene 22061077 22061538 341.0 + 0 ENSG00000254075.1 IG_V_pseudogene IGLVV-66 2 OTTHUMG00000151584.2 +41923 chr22 HAVANA gene 22070225 22070707 360.0 + 0 ENSG00000254161.1 IG_V_pseudogene IGLVIV-65 2 OTTHUMG00000150861.2 +41924 chr22 HAVANA gene 22075366 22075666 301.0 + 0 ENSG00000253242.1 IG_V_pseudogene IGLVIV-64 2 OTTHUMG00000150852.2 +41925 chr22 HAVANA gene 22079770 22080263 384.0 + 0 ENSG00000253752.1 IG_V_pseudogene IGLVI-63 2 OTTHUMG00000150855.2 +41926 chr22 HAVANA gene 22086561 22087110 441.0 + 0 ENSG00000253823.1 IG_V_pseudogene IGLV1-62 2 OTTHUMG00000150848.1 +41927 chr22 HAVANA gene 22087924 22088085 162.0 + 0 ENSG00000275361.1 unprocessed_pseudogene AC245517.5 2 OTTHUMG00000188091.1 +41928 chr22 HAVANA gene 22098700 22099212 414.0 + 0 ENSG00000211638.2 IG_V_gene IGLV8-61 2 OTTHUMG00000150844.2 +41929 chr22 HAVANA gene 22103219 22104857 1262.0 + 0 ENSG00000225741.1 unprocessed_pseudogene AC245517.1 1 OTTHUMG00000150843.1 pseudo_consens +41930 chr22 HAVANA gene 22114844 22118005 923.0 - 0 ENSG00000263366.2 processed_pseudogene ABHD17AP5 1 OTTHUMG00000188359.1 pseudo_consens,semi_processed +41931 chr22 HAVANA gene 22155582 22155942 281.0 + 0 ENSG00000236118.1 unprocessed_pseudogene AC245517.4 2 OTTHUMG00000150845.2 +41932 chr22 HAVANA gene 22157382 22157631 250.0 + 0 ENSG00000233720.1 unprocessed_pseudogene AC245517.3 2 OTTHUMG00000150856.2 +41933 chr22 HAVANA gene 22162199 22162681 362.0 + 0 ENSG00000211639.2 IG_V_gene IGLV4-60 2 OTTHUMG00000150851.2 +41934 chr22 HAVANA gene 22168289 22168634 346.0 + 0 ENSG00000227710.1 unprocessed_pseudogene AC245517.2 2 OTTHUMG00000150858.1 +41935 chr22 HAVANA gene 22170983 22171556 574.0 - 0 ENSG00000224465.1 processed_pseudogene SOCS2P2 1 OTTHUMG00000150854.1 pseudo_consens +41936 chr22 HAVANA gene 22179228 22179477 250.0 + 0 ENSG00000254308.1 IG_V_pseudogene IGLVIV-59 2 OTTHUMG00000150847.1 +41937 chr22 HAVANA gene 22182582 22182885 304.0 + 0 ENSG00000253637.1 IG_V_pseudogene IGLVV-58 2 OTTHUMG00000150893.1 +41938 chr22 HAVANA gene 22185941 22186619 679.0 + 0 ENSG00000236323.1 processed_pseudogene BMP6P1 1 OTTHUMG00000150994.1 pseudo_consens +41939 chr22 HAVANA gene 22195799 22196276 353.0 + 0 ENSG00000211640.4 IG_V_gene IGLV6-57 2 OTTHUMG00000150996.5 +41940 chr22 HAVANA gene 22198560 22199011 342.0 + 0 ENSG00000253126.1 IG_V_pseudogene IGLVI-56 2 OTTHUMG00000151583.1 +41941 chr22 HAVANA gene 22201663 22202161 381.0 + 0 ENSG00000211641.3 IG_V_gene IGLV11-55 2 OTTHUMG00000150995.6 +41942 chr22 HAVANA gene 22038643 22215270 567.0 + 0 ENSG00000211642.3 IG_V_gene IGLV10-54 2 OTTHUMG00000150993.2 +41943 chr22 HAVANA gene 22219647 22220133 367.0 + 0 ENSG00000253935.1 IG_V_pseudogene IGLVIV-53 2 OTTHUMG00000151585.1 +41944 chr22 HAVANA gene 22223187 22224566 1380.0 - 0 ENSG00000228050.1 processed_pseudogene TOP3BP1 2 OTTHUMG00000151044.1 +41945 chr22 HAVANA gene 22228719 22230469 1242.0 - 0 ENSG00000234726.1 processed_pseudogene AC245060.3 1 OTTHUMG00000155637.1 pseudo_consens +41946 chr22 HAVANA gene 22244675 22245515 755.0 + 0 ENSG00000169575.4 protein_coding VPREB1 2 OTTHUMG00000151042.2 +41947 chr22 HAVANA gene 22264601 22273020 8420.0 + 0 ENSG00000279278.1 lincRNA AC245060.6 2 OTTHUMG00000189235.1 +41948 chr22 HAVANA gene 22283928 22287220 3293.0 - 0 ENSG00000274422.1 lincRNA AC245060.5 2 OTTHUMG00000188364.1 +41949 chr22 HAVANA gene 22293733 22294794 524.0 + 0 ENSG00000234630.1 lincRNA AC245060.2 2 OTTHUMG00000151038.1 +41950 chr22 HAVANA gene 22303224 22310401 1121.0 + 0 ENSG00000272779.1 unprocessed_pseudogene AC245060.4 2 OTTHUMG00000151046.4 +41951 chr22 HAVANA gene 22318727 22319226 379.0 + 0 ENSG00000211643.2 IG_V_gene IGLV5-52 2 OTTHUMG00000151049.2 +41952 chr22 HAVANA gene 22322472 22322969 389.0 + 0 ENSG00000211644.3 IG_V_gene IGLV1-51 2 OTTHUMG00000151035.3 +41953 chr22 HAVANA gene 22327300 22327814 405.0 + 0 ENSG00000211645.2 IG_V_gene IGLV1-50 2 OTTHUMG00000151051.4 +41954 chr22 HAVANA gene 22339573 22341214 1642.0 + 0 ENSG00000225724.1 unprocessed_pseudogene ASH2LP3 1 OTTHUMG00000151037.2 pseudo_consens +41955 chr22 HAVANA gene 22343187 22343732 409.0 + 0 ENSG00000223350.2 IG_V_gene IGLV9-49 2 OTTHUMG00000151045.3 +41956 chr22 HAVANA gene 22347807 22348164 358.0 + 0 ENSG00000232515.1 unprocessed_pseudogene AC245060.1 2 OTTHUMG00000151039.2 +41957 chr22 HAVANA gene 22352940 22353433 369.0 + 0 ENSG00000211647.1 IG_V_gene IGLV5-48 2 OTTHUMG00000151041.4 +41958 chr22 HAVANA gene 22357739 22358260 407.0 + 0 ENSG00000211648.2 IG_V_gene IGLV1-47 2 OTTHUMG00000151048.3 +41959 chr22 HAVANA gene 22366210 22367770 1561.0 + 0 ENSG00000237428.1 processed_pseudogene ASH2LP2 1 OTTHUMG00000151052.1 pseudo_consens +41960 chr22 HAVANA gene 22369614 22370087 385.0 + 0 ENSG00000211649.3 IG_V_gene IGLV7-46 2 OTTHUMG00000151040.3 +41961 chr22 HAVANA gene 22370829 22371120 292.0 + 0 ENSG00000232603.1 unprocessed_pseudogene AC245291.3 2 OTTHUMG00000151055.1 +41962 chr22 HAVANA gene 22375986 22376505 397.0 + 0 ENSG00000211650.2 IG_V_gene IGLV5-45 2 OTTHUMG00000151054.4 +41963 chr22 HAVANA gene 22380766 22381347 467.0 + 0 ENSG00000211651.3 IG_V_gene IGLV1-44 2 OTTHUMG00000151050.3 +41964 chr22 HAVANA gene 22395018 22395489 385.0 + 0 ENSG00000211652.2 IG_V_gene IGLV7-43 2 OTTHUMG00000151053.2 +41965 chr22 HAVANA gene 22397032 22397524 381.0 + 0 ENSG00000254175.1 IG_V_pseudogene IGLVI-42 2 OTTHUMG00000151043.1 +41966 chr22 HAVANA gene 22398849 22398999 151.0 + 0 ENSG00000254073.1 IG_V_pseudogene IGLVVII-41-1 2 OTTHUMG00000151296.2 +41967 chr22 HAVANA gene 22404207 22404721 406.0 + 0 ENSG00000253818.1 IG_V_pseudogene IGLV1-41 2 OTTHUMG00000151056.1 +41968 chr22 HAVANA gene 22409766 22410282 407.0 + 0 ENSG00000211653.2 IG_V_gene IGLV1-40 2 OTTHUMG00000151072.2 +41969 chr22 HAVANA gene 22420326 22421310 985.0 + 0 ENSG00000224144.1 processed_pseudogene ASH2LP1 1 OTTHUMG00000151071.1 pseudo_consens +41970 chr22 HAVANA gene 22425821 22426314 385.0 + 0 ENSG00000253889.1 IG_V_pseudogene IGLVI-38 2 OTTHUMG00000151073.2 +41971 chr22 HAVANA gene 22427540 22428035 374.0 + 0 ENSG00000211654.2 IG_V_gene IGLV5-37 2 OTTHUMG00000151069.2 +41972 chr22 HAVANA gene 22431958 22432465 393.0 + 0 ENSG00000211655.3 IG_V_gene IGLV1-36 2 OTTHUMG00000151074.3 +41973 chr22 HAVANA gene 22446686 22448336 1651.0 + 0 ENSG00000230821.1 processed_pseudogene AC245291.2 1 OTTHUMG00000151070.1 pseudo_consens +41974 chr22 HAVANA gene 22450202 22450652 340.0 + 0 ENSG00000253631.1 IG_V_pseudogene IGLV7-35 2 OTTHUMG00000151067.1 +41975 chr22 HAVANA gene 22465659 22465986 328.0 + 0 ENSG00000226595.1 unprocessed_pseudogene AC245291.1 2 OTTHUMG00000151068.1 +41976 chr22 HAVANA gene 22484421 22509154 5723.0 - 0 ENSG00000275004.3 protein_coding ZNF280B 2 OTTHUMG00000151066.5 retrogene +41977 chr22 HAVANA gene 22513736 22520270 2148.0 - 0 ENSG00000169548.3 protein_coding ZNF280A 2 OTTHUMG00000030545.4 retrogene +41978 chr22 HAVANA gene 22547701 22559361 3775.0 - 0 ENSG00000185686.17 protein_coding PRAME 2 OTTHUMG00000151172.3 +41979 chr22 HAVANA gene 22559343 22566602 3111.0 + 0 ENSG00000220891.1 antisense LL22NC03-63E9.3 1 OTTHUMG00000151164.2 +41980 chr22 HAVANA gene 22580014 22580296 283.0 + 0 ENSG00000253120.1 IG_V_pseudogene IGLV2-34 2 OTTHUMG00000151174.3 +41981 chr22 HAVANA gene 22588155 22588688 412.0 + 0 ENSG00000211656.3 IG_V_gene IGLV2-33 2 OTTHUMG00000151178.4 +41982 chr22 HAVANA gene 22594528 22595056 383.0 + 0 ENSG00000211657.3 IG_V_gene IGLV3-32 2 OTTHUMG00000151166.4 +41983 chr22 HAVANA gene 22604445 22605165 297.0 + 0 ENSG00000253920.1 IG_V_pseudogene IGLV3-31 2 OTTHUMG00000151179.1 +41984 chr22 HAVANA gene 22618572 22619163 298.0 + 0 ENSG00000253329.1 IG_V_pseudogene IGLV3-30 2 OTTHUMG00000151182.1 +41985 chr22 HAVANA gene 22630065 22636153 804.0 + 0 ENSG00000215456.6 unprocessed_pseudogene BCRP4 2 OTTHUMG00000151175.2 +41986 chr22 HAVANA gene 22639177 22644473 2375.0 - 0 ENSG00000183169.6 transcribed_unprocessed_pseudogene POM121L1P 1 OTTHUMG00000151169.2 +41987 chr22 HAVANA gene 22644475 22647903 1229.0 + 0 ENSG00000100121.12 protein_coding GGTLC2 2 OTTHUMG00000151177.4 +41988 chr22 HAVANA gene 22661299 22661542 244.0 + 0 ENSG00000253338.1 IG_V_pseudogene IGLV3-29 2 OTTHUMG00000151168.1 +41989 chr22 HAVANA gene 22664473 22664907 304.0 + 0 ENSG00000253451.1 IG_V_pseudogene IGLV2-28 2 OTTHUMG00000151183.1 +41990 chr22 HAVANA gene 22668288 22668806 377.0 + 0 ENSG00000211658.2 IG_V_gene IGLV3-27 2 OTTHUMG00000151171.2 +41991 chr22 HAVANA gene 22673152 22673602 302.0 + 0 ENSG00000253913.1 IG_V_pseudogene IGLV3-26 2 OTTHUMG00000151211.1 +41992 chr22 HAVANA gene 22679097 22679345 249.0 + 0 ENSG00000253779.1 IG_V_pseudogene IGLVVI-25-1 2 OTTHUMG00000151586.1 +41993 chr22 HAVANA gene 22686726 22687271 380.0 + 0 ENSG00000211659.2 IG_V_gene IGLV3-25 2 OTTHUMG00000151221.3 +41994 chr22 HAVANA gene 22689831 22689978 148.0 + 0 ENSG00000232350.1 unprocessed_pseudogene AC244250.2 2 OTTHUMG00000151223.1 +41995 chr22 HAVANA gene 22692778 22693312 451.0 - 0 ENSG00000223999.1 lincRNA AC244250.1 2 OTTHUMG00000151209.1 +41996 chr22 HAVANA gene 22694439 22694952 197.0 + 0 ENSG00000253822.1 IG_V_pseudogene IGLV3-24 2 OTTHUMG00000151230.2 +41997 chr22 HAVANA gene 22697789 22698407 502.0 + 0 ENSG00000211660.3 IG_V_gene IGLV2-23 2 OTTHUMG00000151234.3 +41998 chr22 HAVANA gene 22700760 22700970 211.0 + 0 ENSG00000253546.1 IG_V_pseudogene IGLVVI-22-1 2 OTTHUMG00000151219.1 +41999 chr22 HAVANA gene 22704265 22704822 409.0 + 0 ENSG00000211661.2 IG_V_gene IGLV3-22 2 OTTHUMG00000151229.3 +42000 chr22 HAVANA gene 22711689 22713203 602.0 + 0 ENSG00000211662.2 IG_V_gene IGLV3-21 2 OTTHUMG00000151213.2 +42001 chr22 HAVANA gene 22715290 22715419 130.0 + 0 ENSG00000254240.1 IG_V_pseudogene IGLVI-20 2 OTTHUMG00000151242.1 +42002 chr22 HAVANA gene 22720623 22721145 377.0 + 0 ENSG00000211663.2 IG_V_gene IGLV3-19 2 OTTHUMG00000151226.2 +42003 chr22 HAVANA gene 22730725 22731090 366.0 - 0 ENSG00000278667.1 processed_pseudogene AC244250.3 2 OTTHUMG00000188074.1 +42004 chr22 HAVANA gene 22734607 22735089 367.0 + 0 ENSG00000211664.3 IG_V_gene IGLV2-18 2 OTTHUMG00000151232.3 +42005 chr22 HAVANA gene 22738944 22739187 244.0 + 0 ENSG00000253152.1 IG_V_pseudogene IGLV3-17 2 OTTHUMG00000151227.1 +42006 chr22 HAVANA gene 22747383 22747921 385.0 + 0 ENSG00000211665.3 IG_V_gene IGLV3-16 2 OTTHUMG00000151231.3 +42007 chr22 HAVANA gene 22755554 22755797 244.0 + 0 ENSG00000253786.1 IG_V_pseudogene IGLV3-15 2 OTTHUMG00000151210.2 +42008 chr22 HAVANA gene 22758700 22759218 402.0 + 0 ENSG00000211666.2 IG_V_gene IGLV2-14 2 OTTHUMG00000151235.2 +42009 chr22 HAVANA gene 22762294 22762516 223.0 + 0 ENSG00000253590.1 IG_V_pseudogene IGLV3-13 2 OTTHUMG00000151215.2 +42010 chr22 HAVANA gene 22771824 22772582 356.0 + 0 ENSG00000211667.3 IG_V_gene IGLV3-12 2 OTTHUMG00000151233.3 +42011 chr22 HAVANA gene 22774529 22774691 163.0 + 0 ENSG00000231392.1 unprocessed_pseudogene AC244157.1 2 OTTHUMG00000151295.1 +42012 chr22 HAVANA gene 22785643 22787268 1006.0 - 0 ENSG00000275772.1 processed_pseudogene AC244157.2 2 OTTHUMG00000188073.1 +42013 chr22 HAVANA gene 22792491 22793007 400.0 + 0 ENSG00000211668.2 IG_V_gene IGLV2-11 2 OTTHUMG00000151236.2 +42014 chr22 HAVANA gene 22803076 22803360 285.0 + 0 ENSG00000274381.1 unprocessed_pseudogene AC245028.3 2 OTTHUMG00000188072.2 +42015 chr22 HAVANA gene 22811747 22812281 382.0 + 0 ENSG00000211669.3 IG_V_gene IGLV3-10 2 OTTHUMG00000151237.3 +42016 chr22 HAVANA gene 22814671 22814926 256.0 + 0 ENSG00000226477.1 unprocessed_pseudogene AC245028.1 2 OTTHUMG00000151241.1 +42017 chr22 HAVANA gene 22819010 22819756 461.0 + 0 ENSG00000211670.2 IG_V_gene IGLV3-9 2 OTTHUMG00000151239.2 +42018 chr22 ENSEMBL gene 22822776 22822871 96.0 + 0 ENSG00000284049.1 miRNA MIR650 3 +42019 chr22 HAVANA gene 22822658 22823289 517.0 + 0 ENSG00000278196.3 IG_V_gene IGLV2-8 2 OTTHUMG00000151240.6 ncRNA_host +42020 chr22 HAVANA gene 22834865 22835117 253.0 + 0 ENSG00000237127.1 unprocessed_pseudogene AC245028.2 2 OTTHUMG00000151228.1 +42021 chr22 HAVANA gene 22838602 22838872 271.0 + 0 ENSG00000254077.1 IG_V_pseudogene IGLV3-7 2 OTTHUMG00000151208.1 +42022 chr22 HAVANA gene 22850375 22850624 250.0 + 0 ENSG00000253448.1 IG_V_pseudogene IGLV3-6 2 OTTHUMG00000151222.1 +42023 chr22 HAVANA gene 22856762 22857038 277.0 + 0 ENSG00000253234.1 IG_V_pseudogene IGLV2-5 2 OTTHUMG00000151216.1 +42024 chr22 HAVANA gene 22858025 22858268 244.0 + 0 ENSG00000226420.1 IG_V_pseudogene IGLV3-4 2 OTTHUMG00000151238.1 +42025 chr22 HAVANA gene 22871507 22872035 403.0 + 0 ENSG00000211672.2 IG_V_gene IGLV4-3 2 OTTHUMG00000151244.1 +42026 chr22 HAVANA gene 22873212 22873440 229.0 + 0 ENSG00000253963.1 IG_V_pseudogene IGLV3-2 2 OTTHUMG00000151212.1 +42027 chr22 HAVANA gene 22880706 22881396 398.0 + 0 ENSG00000211673.2 IG_V_gene IGLV3-1 2 OTTHUMG00000151224.3 +42028 chr22 ENSEMBL gene 22886267 22886379 113.0 + 0 ENSG00000264824.1 miRNA MIR5571 3 +42029 chr22 HAVANA gene 22893692 22893818 127.0 + 0 ENSG00000211674.2 IG_J_gene IGLJ1 2 OTTHUMG00000151225.2 overlapping_locus +42030 chr22 HAVANA gene 22895375 22895834 460.0 + 0 ENSG00000211675.2 IG_C_gene IGLC1 2 OTTHUMG00000151218.3 overlapping_locus +42031 chr22 HAVANA gene 22887780 22896107 1335.0 + 0 ENSG00000254709.7 protein_coding IGLL5 2 OTTHUMG00000165670.2 overlapping_locus +42032 chr22 HAVANA gene 22899481 22899655 175.0 + 0 ENSG00000211676.2 IG_J_gene IGLJ2 2 OTTHUMG00000151243.2 +42033 chr22 HAVANA gene 22900976 22901437 462.0 + 0 ENSG00000211677.2 IG_C_gene IGLC2 2 OTTHUMG00000151214.3 +42034 chr22 HAVANA gene 22904850 22905025 176.0 + 0 ENSG00000211678.2 IG_J_gene IGLJ3 2 OTTHUMG00000151220.3 +42035 chr22 HAVANA gene 22906342 22906803 462.0 + 0 ENSG00000211679.2 IG_C_gene IGLC3 2 OTTHUMG00000151217.4 +42036 chr22 HAVANA gene 22910574 22910606 33.0 + 0 ENSG00000211680.2 IG_J_gene IGLJ4 2 OTTHUMG00000151184.2 +42037 chr22 HAVANA gene 22910828 22911075 248.0 + 0 ENSG00000254029.1 IG_C_pseudogene IGLC4 2 OTTHUMG00000151180.1 +42038 chr22 HAVANA gene 22914237 22914308 72.0 + 0 ENSG00000211681.2 IG_J_gene IGLJ5 2 OTTHUMG00000151170.3 +42039 chr22 HAVANA gene 22915635 22915927 293.0 + 0 ENSG00000254030.1 IG_C_pseudogene IGLC5 2 OTTHUMG00000151176.1 +42040 chr22 HAVANA gene 22918132 22918201 70.0 + 0 ENSG00000211682.2 IG_J_gene IGLJ6 2 OTTHUMG00000151181.2 +42041 chr22 HAVANA gene 22919535 22919851 317.0 + 0 ENSG00000222037.5 IG_C_pseudogene IGLC6 2 OTTHUMG00000151165.2 +42042 chr22 HAVANA gene 22921390 22921435 46.0 + 0 ENSG00000211684.2 IG_J_gene IGLJ7 2 OTTHUMG00000151167.3 +42043 chr22 HAVANA gene 22922594 22923034 441.0 + 0 ENSG00000211685.3 IG_C_gene IGLC7 2 OTTHUMG00000151017.6 +42044 chr22 HAVANA gene 22988263 22988581 319.0 + 0 ENSG00000237472.1 processed_pseudogene AC245054.2 1 OTTHUMG00000151014.1 pseudo_consens +42045 chr22 HAVANA gene 22990690 23008356 258.0 + 0 ENSG00000223679.1 unprocessed_pseudogene AC245054.1 2 OTTHUMG00000155698.1 +42046 chr22 HAVANA gene 23070361 23125037 3840.0 + 0 ENSG00000128266.8 protein_coding GNAZ 2 OTTHUMG00000150611.5 +42047 chr22 ENSEMBL gene 23132730 23133005 276.0 - 0 ENSG00000283438.1 misc_RNA RF00017 3 +42048 chr22 ENSEMBL gene 23137805 23137864 60.0 - 0 ENSG00000275635.1 snRNA RF00066 3 +42049 chr22 HAVANA gene 23059415 23145021 2436.0 - 0 ENSG00000100218.11 protein_coding RSPH14 1 OTTHUMG00000150602.3 ncRNA_host +42050 chr22 HAVANA gene 23145326 23164350 4107.0 + 0 ENSG00000100228.12 protein_coding RAB36 2 OTTHUMG00000150601.2 +42051 chr22 HAVANA gene 23179918 23180172 255.0 - 0 ENSG00000236794.5 processed_pseudogene BCRP8 2 OTTHUMG00000155712.2 +42052 chr22 ENSEMBL gene 23261782 23262071 290.0 - 0 ENSG00000240160.3 misc_RNA RN7SL263P 3 +42053 chr22 HAVANA gene 23262767 23265005 2239.0 + 0 ENSG00000230701.2 processed_pseudogene FBXW4P1 1 OTTHUMG00000030931.9 pseudo_consens,overlapping_locus +42054 chr22 HAVANA gene 23179704 23318037 12389.0 + 0 ENSG00000186716.20 protein_coding BCR 2 OTTHUMG00000150655.4 overlapping_locus +42055 chr22 HAVANA gene 23322543 23322927 385.0 - 0 ENSG00000214526.3 processed_pseudogene AP000343.1 1 OTTHUMG00000150656.1 pseudo_consens +42056 chr22 HAVANA gene 23326616 23328493 346.0 + 0 ENSG00000236611.1 lincRNA LINC02556 1 OTTHUMG00000150838.1 +42057 chr22 HAVANA gene 23359603 23387731 1560.0 - 0 ENSG00000215478.8 transcribed_unprocessed_pseudogene CES5AP1 2 OTTHUMG00000150651.3 +42058 chr22 HAVANA gene 23392553 23394792 1202.0 + 0 ENSG00000248409.2 unprocessed_pseudogene AP000344.2 2 OTTHUMG00000155750.2 +42059 chr22 HAVANA gene 23390606 23402726 3269.0 - 0 ENSG00000133519.12 transcribed_unprocessed_pseudogene ZDHHC8P1 2 OTTHUMG00000150650.1 +42060 chr22 HAVANA gene 23433564 23435071 1083.0 + 0 ENSG00000234928.1 lincRNA LINC01659 1 OTTHUMG00000150668.1 +42061 chr22 HAVANA gene 23446598 23460833 795.0 + 0 ENSG00000227755.1 transcribed_processed_pseudogene AP000344.1 2 OTTHUMG00000150667.2 +42062 chr22 HAVANA gene 23462086 23486980 1578.0 - 0 ENSG00000178248.11 lincRNA LINC01658 2 OTTHUMG00000150669.2 +42063 chr22 HAVANA gene 23512494 23513602 477.0 - 0 ENSG00000225413.2 lincRNA LINC02557 2 OTTHUMG00000150840.2 +42064 chr22 HAVANA gene 23536881 23547797 4911.0 + 0 ENSG00000280623.1 lincRNA PCAT14 2 OTTHUMG00000189569.1 +42065 chr22 HAVANA gene 23567064 23573507 612.0 + 0 ENSG00000224277.5 antisense AP000345.1 1 OTTHUMG00000150666.1 +42066 chr22 HAVANA gene 23573125 23580308 904.0 - 0 ENSG00000128322.6 protein_coding IGLL1 2 OTTHUMG00000150673.2 +42067 chr22 HAVANA gene 23580880 23583859 1081.0 - 0 ENSG00000272733.1 lincRNA AP000345.2 2 OTTHUMG00000186121.1 +42068 chr22 HAVANA gene 23607041 23608407 381.0 + 0 ENSG00000278655.1 unprocessed_pseudogene AP000346.4 2 OTTHUMG00000188069.1 +42069 chr22 HAVANA gene 23610329 23610538 210.0 + 0 ENSG00000275609.1 processed_pseudogene AP000346.3 2 OTTHUMG00000188070.1 +42070 chr22 HAVANA gene 23608452 23632321 1302.0 - 0 ENSG00000189269.12 protein_coding DRICH1 2 OTTHUMG00000186352.1 overlapping_locus +42071 chr22 HAVANA gene 23630618 23638941 1087.0 - 0 ENSG00000211683.3 processed_transcript AP000346.1 2 OTTHUMG00000150710.4 overlapping_locus +42072 chr22 HAVANA gene 23638492 23640762 906.0 - 0 ENSG00000234353.2 transcribed_unprocessed_pseudogene AP000346.2 2 OTTHUMG00000150708.3 overlapping_locus +42073 chr22 HAVANA gene 23649213 23653334 637.0 - 0 ENSG00000244723.3 unprocessed_pseudogene ASLP1 2 OTTHUMG00000150707.1 overlapping_locus +42074 chr22 HAVANA gene 23688136 23699176 4715.0 + 0 ENSG00000159496.14 protein_coding RGL4 1 OTTHUMG00000150711.3 +42075 chr22 HAVANA gene 23652860 23717347 3126.0 - 0 ENSG00000273000.5 processed_transcript AP000347.2 2 OTTHUMG00000186001.2 overlapping_locus +42076 chr22 HAVANA gene 23638487 23717356 6550.0 - 0 ENSG00000228315.11 processed_transcript GUSBP11 2 OTTHUMG00000150709.2 overlapping_locus +42077 chr22 HAVANA gene 23658094 23717356 7012.0 - 0 ENSG00000272578.5 transcribed_unprocessed_pseudogene AP000347.1 1 OTTHUMG00000186353.2 pseudo_consens,overlapping_locus +42078 chr22 HAVANA gene 23738678 23751092 6924.0 - 0 ENSG00000187792.4 protein_coding ZNF70 2 OTTHUMG00000150739.2 +42079 chr22 HAVANA gene 23752743 23754468 610.0 - 0 ENSG00000128218.7 protein_coding VPREB3 1 OTTHUMG00000150738.2 +42080 chr22 HAVANA gene 23763021 23765861 2086.0 + 0 ENSG00000169314.14 protein_coding C22orf15 2 OTTHUMG00000150740.2 +42081 chr22 HAVANA gene 23765834 23768443 1360.0 - 0 ENSG00000250479.8 protein_coding CHCHD10 1 OTTHUMG00000150736.2 +42082 chr22 HAVANA gene 23768226 23784316 5176.0 + 0 ENSG00000099953.9 protein_coding MMP11 2 OTTHUMG00000150742.2 +42083 chr22 HAVANA gene 23786931 23838008 16525.0 + 0 ENSG00000099956.19 protein_coding SMARCB1 1 OTTHUMG00000150737.11 +42084 chr22 HAVANA gene 23834503 23839128 3796.0 - 0 ENSG00000099958.14 protein_coding DERL3 1 OTTHUMG00000150743.2 +42085 chr22 HAVANA gene 23856427 23857039 613.0 - 0 ENSG00000272973.1 antisense AP000350.5 2 OTTHUMG00000186120.1 +42086 chr22 HAVANA gene 23865248 23873277 8030.0 - 0 ENSG00000279467.1 antisense AP000350.7 2 OTTHUMG00000189174.1 +42087 chr22 ENSEMBL gene 23879493 23879790 298.0 - 0 ENSG00000244425.3 misc_RNA RN7SL268P 3 +42088 chr22 HAVANA gene 23856703 23886309 8890.0 + 0 ENSG00000133460.19 protein_coding SLC2A11 1 OTTHUMG00000166469.2 overlapping_locus +42089 chr22 HAVANA gene 23862188 23895223 788.0 + 0 ENSG00000251357.4 protein_coding AP000350.4 2 OTTHUMG00000150787.3 overlapping_locus +42090 chr22 HAVANA gene 23894004 23895227 1109.0 + 0 ENSG00000240972.1 protein_coding MIF 2 OTTHUMG00000150773.2 overlapping_locus +42091 chr22 HAVANA gene 23894426 23898930 1476.0 - 0 ENSG00000218537.1 antisense MIF-AS1 2 OTTHUMG00000150772.2 +42092 chr22 HAVANA gene 23901432 23907068 5637.0 - 0 ENSG00000273295.1 lincRNA AP000350.6 2 OTTHUMG00000150777.2 +42093 chr22 HAVANA gene 23926900 23929574 1763.0 + 0 ENSG00000225282.1 processed_pseudogene AP000350.2 1 OTTHUMG00000150775.1 pseudo_consens +42094 chr22 HAVANA gene 23939998 23942798 532.0 + 0 ENSG00000206090.4 unprocessed_pseudogene AP000350.1 2 OTTHUMG00000150771.1 +42095 chr22 HAVANA gene 23949918 23954042 289.0 + 0 ENSG00000231271.1 unprocessed_pseudogene AP000350.3 2 OTTHUMG00000150776.1 +42096 chr22 HAVANA gene 23957414 23961186 1099.0 - 0 ENSG00000133433.10 protein_coding GSTT2B 2 OTTHUMG00000150774.2 +42097 chr22 HAVANA gene 23963780 23964374 254.0 + 0 ENSG00000228039.3 processed_pseudogene AC253536.2 2 OTTHUMG00000166616.2 +42098 chr22 HAVANA gene 23969211 23969873 663.0 + 0 ENSG00000272787.1 lincRNA AC253536.6 2 OTTHUMG00000186175.1 overlapping_locus +42099 chr22 HAVANA gene 23966901 23972532 1545.0 + 0 ENSG00000099974.7 protein_coding DDTL 2 OTTHUMG00000150800.1 overlapping_locus +42100 chr22 HAVANA gene 23976904 23977585 347.0 - 0 ENSG00000250470.1 unprocessed_pseudogene AC253536.5 2 OTTHUMG00000150799.2 overlapping_locus +42101 chr22 HAVANA gene 23971365 23979828 1503.0 - 0 ENSG00000099977.14 protein_coding DDT 2 OTTHUMG00000193422.1 overlapping_locus +42102 chr22 HAVANA gene 23971378 23980469 805.0 - 0 ENSG00000285762.1 protein_coding AC253536.7 2 OTTHUMG00000150798.3 overlapping_locus +42103 chr22 HAVANA gene 23980058 23983915 1184.0 + 0 ENSG00000099984.11 polymorphic_pseudogene GSTT2 2 OTTHUMG00000150786.5 +42104 chr22 HAVANA gene 23976872 23991421 699.0 - 0 ENSG00000224205.2 transcribed_unprocessed_pseudogene AC253536.1 2 OTTHUMG00000150801.2 overlapping_locus +42105 chr22 HAVANA gene 23998401 24005453 2028.0 - 0 ENSG00000276950.5 protein_coding GSTT4 2 OTTHUMG00000150811.6 +42106 chr22 HAVANA gene 24006305 24008258 267.0 - 0 ENSG00000235689.1 unprocessed_pseudogene AC253536.4 2 OTTHUMG00000150812.1 +42107 chr22 HAVANA gene 24101689 24103354 558.0 + 0 ENSG00000232545.1 sense_intronic AC253536.3 2 OTTHUMG00000150809.1 overlapping_locus +42108 chr22 HAVANA gene 24011192 24178628 9388.0 + 0 ENSG00000099991.17 protein_coding CABIN1 1 OTTHUMG00000150797.5 overlapping_locus +42109 chr22 HAVANA gene 24181259 24189110 5279.0 + 0 ENSG00000099994.10 protein_coding SUSD2 2 OTTHUMG00000150792.1 +42110 chr22 HAVANA gene 24219654 24245142 6054.0 - 0 ENSG00000099998.17 protein_coding GGT5 2 OTTHUMG00000150796.3 +42111 chr22 HAVANA gene 24248074 24249466 664.0 - 0 ENSG00000230712.2 unprocessed_pseudogene GGTLC4P 2 OTTHUMG00000150766.1 +42112 chr22 HAVANA gene 24259929 24263764 691.0 - 0 ENSG00000225098.1 unprocessed_pseudogene BCRP1 2 OTTHUMG00000150768.1 +42113 chr22 HAVANA gene 24251828 24265525 5137.0 + 0 ENSG00000128262.8 transcribed_unprocessed_pseudogene POM121L9P 2 OTTHUMG00000150763.2 +42114 chr22 HAVANA gene 24269346 24270134 456.0 - 0 ENSG00000215464.4 processed_pseudogene AP000354.1 1 OTTHUMG00000150770.2 pseudo_consens +42115 chr22 HAVANA gene 24270817 24417740 7324.0 + 0 ENSG00000100014.19 protein_coding SPECC1L 2 OTTHUMG00000171450.7 overlapping_locus +42116 chr22 HAVANA gene 24270898 24442356 6204.0 + 0 ENSG00000258555.6 protein_coding SPECC1L-ADORA2A 2 OTTHUMG00000150762.5 overlapping_locus +42117 chr22 HAVANA gene 24417879 24442360 4193.0 + 0 ENSG00000128271.21 protein_coding ADORA2A 2 OTTHUMG00000150761.5 overlapping_locus +42118 chr22 HAVANA gene 24429206 24495074 4025.0 - 0 ENSG00000178803.10 antisense ADORA2A-AS1 1 OTTHUMG00000150735.6 +42119 chr22 HAVANA gene 24516508 24518386 480.0 + 0 ENSG00000228923.1 antisense AP000355.1 2 OTTHUMG00000150750.1 overlapping_locus +42120 chr22 HAVANA gene 24494107 24528390 6793.0 + 0 ENSG00000100024.14 protein_coding UPB1 2 OTTHUMG00000150749.2 overlapping_locus +42121 chr22 HAVANA gene 24540423 24555935 4529.0 - 0 ENSG00000138867.16 protein_coding GUCD1 1 OTTHUMG00000150728.3 +42122 chr22 HAVANA gene 24585620 24593208 3422.0 - 0 ENSG00000178026.12 protein_coding LRRC75B 2 OTTHUMG00000150729.1 +42123 chr22 HAVANA gene 24598054 24599398 364.0 + 0 ENSG00000230947.2 sense_intronic AP000356.1 2 OTTHUMG00000150625.2 overlapping_locus +42124 chr22 HAVANA gene 24555503 24609980 2544.0 + 0 ENSG00000100028.11 protein_coding SNRPD3 2 OTTHUMG00000150727.2 overlapping_locus +42125 chr22 HAVANA gene 24583750 24629005 4434.0 + 0 ENSG00000100031.18 protein_coding GGT1 2 OTTHUMG00000030859.33 overlapping_locus +42126 chr22 HAVANA gene 24633272 24633443 172.0 + 0 ENSG00000284233.1 transcribed_unprocessed_pseudogene AP000356.4 2 OTTHUMG00000192199.1 overlapping_locus +42127 chr22 HAVANA gene 24632915 24650012 1745.0 + 0 ENSG00000215481.9 processed_transcript BCRP3 2 OTTHUMG00000150726.6 overlapping_locus +42128 chr22 HAVANA gene 24645171 24651657 4634.0 - 0 ENSG00000284070.1 antisense AP000356.2 2 OTTHUMG00000192201.1 +42129 chr22 HAVANA gene 24644791 24653356 1603.0 + 0 ENSG00000284128.1 transcribed_unprocessed_pseudogene AP000356.3 2 OTTHUMG00000192200.1 overlapping_locus +42130 chr22 HAVANA gene 24657481 24658765 1285.0 - 0 ENSG00000224124.3 processed_pseudogene POM121L10P 2 OTTHUMG00000150732.1 +42131 chr22 HAVANA gene 24686168 24686679 512.0 + 0 ENSG00000224806.2 processed_pseudogene ARL5AP4 1 OTTHUMG00000155636.1 pseudo_consens +42132 chr22 HAVANA gene 24686923 24688087 1165.0 + 0 ENSG00000224334.1 processed_pseudogene AP000357.1 1 OTTHUMG00000150733.1 pseudo_consens +42133 chr22 HAVANA gene 24691122 24696003 597.0 - 0 ENSG00000282012.1 lincRNA AP000357.2 2 OTTHUMG00000191460.1 +42134 chr22 HAVANA gene 24703348 24703503 156.0 + 0 ENSG00000237601.1 processed_pseudogene AP000358.1 1 OTTHUMG00000155630.1 pseudo_consens +42135 chr22 HAVANA gene 24712292 24712520 229.0 + 0 ENSG00000182351.7 processed_pseudogene CRIP1P4 1 OTTHUMG00000150730.1 pseudo_consens +42136 chr22 HAVANA gene 24719034 24774720 3803.0 - 0 ENSG00000184571.13 protein_coding PIWIL3 1 OTTHUMG00000150788.3 +42137 chr22 ENSEMBL gene 24901147 24901214 68.0 - 0 ENSG00000199783.1 snoRNA RF00275 3 +42138 chr22 HAVANA gene 24806169 24927578 8607.0 + 0 ENSG00000167037.18 protein_coding SGSM1 2 OTTHUMG00000150837.1 +42139 chr22 HAVANA gene 24934954 24946695 1123.0 - 0 ENSG00000206069.6 protein_coding TMEM211 2 OTTHUMG00000150790.3 +42140 chr22 HAVANA gene 25009685 25015072 5388.0 - 0 ENSG00000279085.1 antisense AL022323.3 2 OTTHUMG00000189171.1 +42141 chr22 HAVANA gene 25022594 25024652 2059.0 - 0 ENSG00000279548.1 antisense AL022323.5 2 OTTHUMG00000189172.1 +42142 chr22 HAVANA gene 25048967 25051966 3000.0 - 0 ENSG00000279006.1 antisense AL022323.2 2 OTTHUMG00000189170.1 +42143 chr22 HAVANA gene 25052122 25065241 13120.0 - 0 ENSG00000279110.1 antisense AL022323.4 2 OTTHUMG00000189169.1 +42144 chr22 HAVANA gene 25102433 25112692 957.0 - 0 ENSG00000203280.4 antisense AL022323.1 1 OTTHUMG00000150908.3 +42145 chr22 HAVANA gene 25179309 25179554 246.0 - 0 ENSG00000271181.1 processed_pseudogene Z99916.2 1 OTTHUMG00000150902.2 pseudo_consens +42146 chr22 HAVANA gene 24952730 25197448 16439.0 + 0 ENSG00000197077.13 protein_coding KIAA1671 2 OTTHUMG00000150841.9 +42147 chr22 HAVANA gene 25199850 25207363 867.0 + 0 ENSG00000100053.9 protein_coding CRYBB3 1 OTTHUMG00000150869.1 +42148 chr22 HAVANA gene 25212742 25213685 482.0 + 0 ENSG00000236641.1 lincRNA Z99916.1 2 OTTHUMG00000150865.2 +42149 chr22 HAVANA gene 25219522 25231869 886.0 + 0 ENSG00000244752.2 protein_coding CRYBB2 2 OTTHUMG00000150905.2 +42150 chr22 HAVANA gene 25251523 25252602 1080.0 - 0 ENSG00000279298.1 lincRNA Z99916.3 2 OTTHUMG00000189168.1 +42151 chr22 HAVANA gene 25279529 25282674 593.0 - 0 ENSG00000233577.6 lincRNA AL022332.1 1 OTTHUMG00000150906.2 +42152 chr22 HAVANA gene 25282943 25300791 190.0 + 0 ENSG00000285690.1 transcribed_unprocessed_pseudogene AL022332.2 2 OTTHUMG00000192635.1 overlapping_locus +42153 chr22 HAVANA gene 25318256 25320080 434.0 + 0 ENSG00000206066.3 unprocessed_pseudogene IGLL3P 2 OTTHUMG00000192636.1 overlapping_locus +42154 chr22 HAVANA gene 25282613 25320086 959.0 + 0 ENSG00000285968.1 processed_transcript AL022324.4 2 OTTHUMG00000150866.3 overlapping_locus +42155 chr22 HAVANA gene 25327252 25339975 663.0 + 0 ENSG00000230637.2 unprocessed_pseudogene AL022324.1 2 OTTHUMG00000150868.1 +42156 chr22 HAVANA gene 25349543 25350322 780.0 - 0 ENSG00000231466.2 processed_pseudogene AL022324.2 1 OTTHUMG00000155629.1 pseudo_consens +42157 chr22 HAVANA gene 25351418 25405377 4555.0 - 0 ENSG00000100068.12 protein_coding LRP5L 2 OTTHUMG00000150900.6 +42158 chr22 HAVANA gene 25434324 25435070 747.0 - 0 ENSG00000272942.1 lincRNA AL022324.3 2 OTTHUMG00000186164.1 +42159 chr22 HAVANA gene 25436312 25436915 604.0 + 0 ENSG00000272798.1 lincRNA AL008721.1 2 OTTHUMG00000186165.1 +42160 chr22 HAVANA gene 25437306 25437823 397.0 - 0 ENSG00000271138.1 IG_V_pseudogene IGLVIVOR22-1 2 OTTHUMG00000184784.1 +42161 chr22 ENSEMBL gene 25455646 25455711 66.0 + 0 ENSG00000277872.1 miRNA MIR6817 3 +42162 chr22 HAVANA gene 25476218 25479971 3754.0 + 0 ENSG00000272977.1 sense_intronic AL008721.2 2 OTTHUMG00000186166.2 overlapping_locus +42163 chr22 HAVANA gene 25448105 25520854 6435.0 + 0 ENSG00000100058.12 transcribed_unprocessed_pseudogene CRYBB2P1 2 OTTHUMG00000150874.3 overlapping_locus +42164 chr22 HAVANA gene 25561117 25564462 939.0 - 0 ENSG00000234884.1 antisense AL022329.1 1 OTTHUMG00000150903.1 +42165 chr22 HAVANA gene 25580241 25581382 660.0 - 0 ENSG00000237387.1 antisense AL022329.2 1 OTTHUMG00000150901.1 +42166 chr22 HAVANA gene 25647261 25649232 1628.0 + 0 ENSG00000224003.1 processed_pseudogene YES1P1 1 OTTHUMG00000150872.1 pseudo_consens,overlapping_locus +42167 chr22 ENSEMBL gene 25715041 25715169 129.0 - 0 ENSG00000222585.1 rRNA_pseudogene RNA5SP494 3 +42168 chr22 HAVANA gene 25564849 25729294 9303.0 + 0 ENSG00000100077.14 protein_coding GRK3 2 OTTHUMG00000150280.5 overlapping_locus +42169 chr22 HAVANA gene 25756318 25756669 352.0 - 0 ENSG00000278960.1 antisense AL022329.3 2 OTTHUMG00000189167.1 +42170 chr22 HAVANA gene 25876854 25903247 6326.0 - 0 ENSG00000231933.7 antisense Z98949.1 1 OTTHUMG00000150907.4 +42171 chr22 ENSEMBL gene 25963983 25964273 291.0 - 0 ENSG00000223056.1 misc_RNA RN7SKP169 3 +42172 chr22 HAVANA gene 25959074 25983526 472.0 - 0 ENSG00000232464.1 antisense Z98949.3 2 OTTHUMG00000150904.1 ncRNA_host +42173 chr22 HAVANA gene 26006389 26006532 144.0 - 0 ENSG00000232050.1 processed_pseudogene Z98949.2 1 OTTHUMG00000155628.1 pseudo_consens +42174 chr22 HAVANA gene 25742144 26031041 9706.0 + 0 ENSG00000133454.15 protein_coding MYO18B 1 OTTHUMG00000151129.2 +42175 chr22 HAVANA gene 26161910 26163214 357.0 - 0 ENSG00000229770.1 antisense AL022337.1 2 OTTHUMG00000151345.2 +42176 chr22 HAVANA gene 26161834 26164303 188.0 + 0 ENSG00000236464.1 lincRNA LINC02559 2 OTTHUMG00000151344.1 +42177 chr22 HAVANA gene 26241331 26254092 535.0 - 0 ENSG00000224192.2 antisense AL080273.1 2 OTTHUMG00000151346.2 +42178 chr22 HAVANA gene 26169474 26383597 7149.0 + 0 ENSG00000100095.18 protein_coding SEZ6L 2 OTTHUMG00000150870.5 +42179 chr22 ENSEMBL gene 26390667 26390776 110.0 - 0 ENSG00000252267.1 rRNA_pseudogene RNA5SP495 3 +42180 chr22 HAVANA gene 26422071 26423193 807.0 - 0 ENSG00000230203.1 processed_pseudogene Z99714.1 1 OTTHUMG00000150886.1 pseudo_consens +42181 chr22 HAVANA gene 26429273 26445015 3357.0 + 0 ENSG00000128203.6 protein_coding ASPHD2 2 OTTHUMG00000150884.1 +42182 chr22 HAVANA gene 26443423 26483837 10782.0 - 0 ENSG00000100099.20 protein_coding HPS4 2 OTTHUMG00000030459.8 +42183 chr22 HAVANA gene 26483877 26494658 4319.0 + 0 ENSG00000100104.13 protein_coding SRRD 2 OTTHUMG00000150885.4 +42184 chr22 HAVANA gene 26491225 26512505 5436.0 - 0 ENSG00000100109.16 protein_coding TFIP11 1 OTTHUMG00000150883.4 +42185 chr22 HAVANA gene 26512537 26514568 2032.0 + 0 ENSG00000261188.1 antisense Z95115.1 2 OTTHUMG00000172738.1 +42186 chr22 ENSEMBL gene 26555212 26555323 112.0 - 0 ENSG00000221760.1 miRNA MIR548J 3 +42187 chr22 HAVANA gene 26560526 26561088 563.0 + 0 ENSG00000213707.2 processed_pseudogene HMGB1P10 1 OTTHUMG00000150984.1 pseudo_consens +42188 chr22 HAVANA gene 26521983 26596717 6957.0 - 0 ENSG00000128294.15 protein_coding TPST2 2 OTTHUMG00000150987.5 ncRNA_host +42189 chr22 HAVANA gene 26599278 26618088 1102.0 - 0 ENSG00000100122.6 protein_coding CRYBB1 2 OTTHUMG00000150980.2 +42190 chr22 HAVANA gene 26621964 26630672 811.0 + 0 ENSG00000196431.3 protein_coding CRYBA4 2 OTTHUMG00000150983.2 +42191 chr22 HAVANA gene 26644889 26645336 448.0 - 0 ENSG00000226912.1 processed_pseudogene ISCA2P1 1 OTTHUMG00000150978.1 pseudo_consens +42192 chr22 ENSEMBL gene 26657521 26657655 135.0 + 0 ENSG00000278404.1 misc_RNA RF01874 3 +42193 chr22 ENSEMBL gene 26671402 26671550 149.0 + 0 ENSG00000277941.1 misc_RNA RF01875 3 +42194 chr22 ENSEMBL gene 26672164 26672248 85.0 + 0 ENSG00000275942.1 misc_RNA RF01876 3 +42195 chr22 HAVANA gene 26667693 26672654 2613.0 - 0 ENSG00000206028.1 lincRNA Z99774.1 1 OTTHUMG00000150982.1 +42196 chr22 ENSEMBL gene 26673254 26673630 377.0 + 0 ENSG00000276991.1 misc_RNA RF01877 3 +42197 chr22 HAVANA gene 26646428 26676475 11505.0 + 0 ENSG00000225783.7 lincRNA MIAT 1 OTTHUMG00000150985.5 ncRNA_host,overlapping_locus +42198 chr22 HAVANA gene 26672767 26780207 2847.0 + 0 ENSG00000244625.5 lincRNA MIATNB 1 OTTHUMG00000150981.3 ncRNA_host,overlapping_locus +42199 chr22 HAVANA gene 26858634 26865786 6043.0 + 0 ENSG00000223704.1 lincRNA LINC01422 2 OTTHUMG00000150979.1 +42200 chr22 HAVANA gene 26886909 26887548 578.0 - 0 ENSG00000231369.1 processed_pseudogene Z97353.1 1 OTTHUMG00000150977.1 pseudo_consens +42201 chr22 HAVANA gene 26903292 26920611 744.0 + 0 ENSG00000235271.5 lincRNA LINC01422 1 OTTHUMG00000151357.1 +42202 chr22 HAVANA gene 27019369 27024550 5182.0 + 0 ENSG00000279440.1 lincRNA AL008638.3 2 OTTHUMG00000189177.1 +42203 chr22 ENSEMBL gene 27035887 27035991 105.0 + 0 ENSG00000200443.1 snRNA RNU6-1066P 3 +42204 chr22 HAVANA gene 27040197 27041494 1298.0 + 0 ENSG00000279914.1 lincRNA AL008638.5 2 OTTHUMG00000189178.1 +42205 chr22 HAVANA gene 27044001 27045315 1315.0 + 0 ENSG00000279848.1 lincRNA AL008638.4 2 OTTHUMG00000189179.1 +42206 chr22 HAVANA gene 27048144 27060518 2383.0 - 0 ENSG00000236858.1 lincRNA AL008638.2 2 OTTHUMG00000150953.1 +42207 chr22 HAVANA gene 27102766 27107019 4254.0 + 0 ENSG00000280025.1 lincRNA AL008638.6 2 OTTHUMG00000189180.1 +42208 chr22 HAVANA gene 27143478 27159878 473.0 + 0 ENSG00000231405.1 lincRNA AL008638.1 2 OTTHUMG00000150945.1 +42209 chr22 HAVANA gene 27204211 27205126 308.0 + 0 ENSG00000238195.1 lincRNA AL021153.1 2 OTTHUMG00000150949.1 +42210 chr22 HAVANA gene 27221349 27224727 975.0 - 0 ENSG00000233521.5 lincRNA LINC01638 1 OTTHUMG00000150955.2 +42211 chr22 HAVANA gene 27276240 27286349 274.0 + 0 ENSG00000233574.1 lincRNA AL020994.3 1 OTTHUMG00000150952.1 +42212 chr22 HAVANA gene 27310651 27317456 5052.0 + 0 ENSG00000226741.1 lincRNA LINC02554 2 OTTHUMG00000150947.1 +42213 chr22 HAVANA gene 27307483 27318538 578.0 - 0 ENSG00000223726.1 lincRNA AL020994.1 2 OTTHUMG00000150956.1 +42214 chr22 HAVANA gene 27331787 27379265 571.0 + 0 ENSG00000230051.1 lincRNA AL020994.2 2 OTTHUMG00000150950.1 +42215 chr22 HAVANA gene 27414462 27419713 1044.0 - 0 ENSG00000280445.1 lincRNA AL049536.1 2 OTTHUMG00000189165.2 +42216 chr22 HAVANA gene 27457247 27460060 770.0 - 0 ENSG00000227880.1 lincRNA AL050402.1 1 OTTHUMG00000150954.1 +42217 chr22 HAVANA gene 27563839 27573573 577.0 - 0 ENSG00000224027.1 lincRNA AL133456.1 2 OTTHUMG00000150951.1 +42218 chr22 HAVANA gene 27707580 27709931 115.0 + 0 ENSG00000231495.1 lincRNA AL121885.3 2 OTTHUMG00000150946.1 +42219 chr22 HAVANA gene 27676559 27714970 819.0 - 0 ENSG00000227838.1 lincRNA AL121885.2 2 OTTHUMG00000150948.1 +42220 chr22 HAVANA gene 27716480 27721677 451.0 + 0 ENSG00000226169.1 antisense AL121885.1 2 OTTHUMG00000150974.1 +42221 chr22 HAVANA gene 27748277 27801498 7693.0 - 0 ENSG00000169184.5 protein_coding MN1 2 OTTHUMG00000150975.1 +42222 chr22 ENSEMBL gene 27919384 27919545 162.0 + 0 ENSG00000277460.1 misc_RNA RF02198 3 +42223 chr22 HAVANA gene 27851669 27920134 5129.0 - 0 ENSG00000180957.17 protein_coding PITPNB 2 OTTHUMG00000150976.6 +42224 chr22 ENSEMBL gene 27920526 27920611 86.0 + 0 ENSG00000283225.1 miRNA MIR3199-2 3 +42225 chr22 ENSEMBL gene 27920525 27920612 88.0 - 0 ENSG00000264073.1 miRNA MIR3199-1 3 +42226 chr22 ENSEMBL gene 27922022 27922178 157.0 + 0 ENSG00000276150.1 misc_RNA RF02199 3 +42227 chr22 ENSEMBL gene 27994474 27994654 181.0 + 0 ENSG00000274342.1 misc_RNA RF02200 3 +42228 chr22 ENSEMBL gene 28002484 28002595 112.0 + 0 ENSG00000276675.1 misc_RNA RF02201 3 +42229 chr22 HAVANA gene 27919376 28008581 10818.0 + 0 ENSG00000235954.6 processed_transcript TTC28-AS1 1 OTTHUMG00000150973.1 ncRNA_host +42230 chr22 ENSEMBL gene 28056153 28056453 301.0 - 0 ENSG00000239249.3 misc_RNA RN7SL757P 3 +42231 chr22 ENSEMBL gene 28232756 28232823 68.0 - 0 ENSG00000201209.1 snoRNA RF00150 3 +42232 chr22 ENSEMBL gene 28303754 28303850 97.0 + 0 ENSG00000199797.1 misc_RNA RF00019 3 +42233 chr22 ENSEMBL gene 28459869 28459948 80.0 + 0 ENSG00000276162.1 miRNA MIR5739 3 +42234 chr22 ENSEMBL gene 28642979 28643270 292.0 - 0 ENSG00000266503.2 misc_RNA RN7SL162P 3 +42235 chr22 HAVANA gene 27978014 28679865 12645.0 - 0 ENSG00000100154.14 protein_coding TTC28 1 OTTHUMG00000151006.5 ncRNA_host +42236 chr22 HAVANA gene 28687743 28742422 4142.0 - 0 ENSG00000183765.21 protein_coding CHEK2 1 OTTHUMG00000151023.24 +42237 chr22 HAVANA gene 28742031 28757515 1462.0 + 0 ENSG00000100209.9 protein_coding HSCB 2 OTTHUMG00000151092.1 +42238 chr22 HAVANA gene 28772674 28789301 4326.0 + 0 ENSG00000159873.9 protein_coding CCDC117 2 OTTHUMG00000151091.2 +42239 chr22 HAVANA gene 28794555 28800597 3028.0 - 0 ENSG00000100219.16 protein_coding XBP1 1 OTTHUMG00000151094.3 +42240 chr22 HAVANA gene 28814914 28815662 749.0 + 0 ENSG00000272858.1 sense_intronic Z93930.3 2 OTTHUMG00000186156.1 overlapping_locus +42241 chr22 HAVANA gene 28835893 28836137 245.0 - 0 ENSG00000224256.1 processed_pseudogene Z93930.1 1 OTTHUMG00000151116.1 pseudo_consens +42242 chr22 HAVANA gene 28800683 28848559 1470.0 + 0 ENSG00000226471.6 antisense Z93930.2 1 OTTHUMG00000151093.2 overlapping_locus +42243 chr22 HAVANA gene 28992721 29018620 674.0 + 0 ENSG00000235786.1 sense_intronic ZNRF3-IT1 2 OTTHUMG00000151010.1 overlapping_locus +42244 chr22 HAVANA gene 29024999 29031476 2170.0 - 0 ENSG00000177993.3 antisense ZNRF3-AS1 2 OTTHUMG00000153511.1 +42245 chr22 HAVANA gene 28883592 29057487 6968.0 + 0 ENSG00000183579.15 protein_coding ZNRF3 2 OTTHUMG00000151009.2 overlapping_locus +42246 chr22 HAVANA gene 29058672 29061844 995.0 - 0 ENSG00000100249.4 protein_coding C22orf31 2 OTTHUMG00000151011.1 +42247 chr22 HAVANA gene 29099041 29111683 539.0 - 0 ENSG00000226772.1 antisense AL021393.1 2 OTTHUMG00000151012.1 +42248 chr22 ENSEMBL gene 29134014 29134120 107.0 + 0 ENSG00000200871.1 snRNA RNU6-810P 3 +42249 chr22 HAVANA gene 29073078 29168333 7977.0 + 0 ENSG00000183762.12 protein_coding KREMEN1 2 OTTHUMG00000030987.4 ncRNA_host +42250 chr22 ENSEMBL gene 29191697 29191808 112.0 - 0 ENSG00000251952.1 snRNA RNU6-1219P 3 +42251 chr22 HAVANA gene 29205851 29259597 4899.0 + 0 ENSG00000186998.15 protein_coding EMID1 2 OTTHUMG00000151013.8 +42252 chr22 HAVANA gene 29260889 29262037 385.0 + 0 ENSG00000237015.1 antisense AL031186.1 1 OTTHUMG00000151156.1 +42253 chr22 HAVANA gene 29259852 29268209 3014.0 - 0 ENSG00000100263.13 protein_coding RHBDD3 1 OTTHUMG00000151032.3 +42254 chr22 HAVANA gene 29268009 29300525 10326.0 + 0 ENSG00000182944.17 protein_coding EWSR1 1 OTTHUMG00000151107.9 +42255 chr22 HAVANA gene 29306582 29312785 4481.0 + 0 ENSG00000185340.15 protein_coding GAS2L1 1 OTTHUMG00000151108.6 +42256 chr22 HAVANA gene 29316744 29317220 477.0 - 0 ENSG00000273216.1 sense_intronic AC002059.1 2 OTTHUMG00000186150.1 overlapping_locus +42257 chr22 HAVANA gene 29312933 29319679 2240.0 - 0 ENSG00000100276.9 protein_coding RASL10A 2 OTTHUMG00000151106.2 overlapping_locus +42258 chr22 ENSEMBL gene 29333163 29333258 96.0 - 0 ENSG00000239127.1 snoRNA SNORD125 3 +42259 chr22 ENSEMBL gene 29333158 29333267 110.0 - 0 ENSG00000280968.1 miRNA MIR3653 3 +42260 chr22 HAVANA gene 29387909 29417757 1648.0 + 0 ENSG00000285697.1 transcribed_unprocessed_pseudogene AC002059.2 2 OTTHUMG00000193371.1 +42261 chr22 HAVANA gene 29327680 29423179 6721.0 - 0 ENSG00000100280.16 protein_coding AP1B1 2 OTTHUMG00000151109.4 ncRNA_host +42262 chr22 HAVANA gene 29419155 29423193 175.0 - 0 ENSG00000242156.1 unprocessed_pseudogene AC000041.1 2 OTTHUMG00000151154.1 +42263 chr22 HAVANA gene 29432944 29435005 846.0 + 0 ENSG00000278292.1 unprocessed_pseudogene RFPL4AP6 2 OTTHUMG00000188040.1 +42264 chr22 HAVANA gene 29438583 29442455 1496.0 + 0 ENSG00000128250.5 protein_coding RFPL1 2 OTTHUMG00000150516.1 +42265 chr22 HAVANA gene 29436534 29478175 6271.0 - 0 ENSG00000225465.8 antisense RFPL1S 2 OTTHUMG00000030476.7 +42266 chr22 HAVANA gene 29480220 29481113 343.0 - 0 ENSG00000282816.1 antisense AC000035.1 2 OTTHUMG00000191461.1 +42267 chr22 HAVANA gene 29480230 29491390 3783.0 + 0 ENSG00000100285.9 protein_coding NEFH 2 OTTHUMG00000151155.2 +42268 chr22 HAVANA gene 29513889 29535390 289.0 - 0 ENSG00000234208.1 sense_intronic AC005529.1 2 OTTHUMG00000151293.1 overlapping_locus +42269 chr22 HAVANA gene 29505879 29555216 7878.0 - 0 ENSG00000100296.13 protein_coding THOC5 2 OTTHUMG00000151291.11 overlapping_locus +42270 chr22 HAVANA gene 29554808 29581337 3067.0 - 0 ENSG00000184117.11 protein_coding NIPSNAP1 1 OTTHUMG00000151294.3 overlapping_locus +42271 chr22 HAVANA gene 29608900 29609501 602.0 + 0 ENSG00000233010.1 processed_pseudogene RPEP4 1 OTTHUMG00000155625.1 pseudo_consens,overlapping_locus +42272 chr22 HAVANA gene 29603556 29698598 7170.0 + 0 ENSG00000186575.17 protein_coding NF2 2 OTTHUMG00000030727.4 overlapping_locus +42273 chr22 HAVANA gene 29711820 29719714 244.0 - 0 ENSG00000239446.1 antisense AC004882.2 2 OTTHUMG00000151281.1 overlapping_locus +42274 chr22 HAVANA gene 29705256 29719859 773.0 - 0 ENSG00000232396.2 antisense AC004882.1 1 OTTHUMG00000151279.2 overlapping_locus +42275 chr22 HAVANA gene 29720084 29731839 3259.0 + 0 ENSG00000100314.3 protein_coding CABP7 2 OTTHUMG00000151282.1 +42276 chr22 ENSEMBL gene 29758758 29758859 102.0 + 0 ENSG00000200976.1 misc_RNA RF00019 3 +42277 chr22 HAVANA gene 29730956 29767011 3200.0 - 0 ENSG00000100319.12 protein_coding ZMAT5 2 OTTHUMG00000151292.1 +42278 chr22 HAVANA gene 29767369 29770413 975.0 + 0 ENSG00000184076.13 protein_coding UQCR10 2 OTTHUMG00000151283.2 +42279 chr22 HAVANA gene 29788608 29838304 5416.0 - 0 ENSG00000100325.14 protein_coding ASCC2 1 OTTHUMG00000067658.6 +42280 chr22 ENSEMBL gene 29899587 29899693 107.0 - 0 ENSG00000207455.1 snRNA RNU6-331P 3 +42281 chr22 ENSEMBL gene 30007049 30007113 65.0 + 0 ENSG00000275818.1 miRNA MIR6818 3 +42282 chr22 HAVANA gene 29978950 30028236 49287.0 - 0 ENSG00000279159.1 antisense AC003681.1 2 OTTHUMG00000189264.1 overlapping_locus +42283 chr22 HAVANA gene 29883155 30030866 9903.0 + 0 ENSG00000100330.15 protein_coding MTMR3 1 OTTHUMG00000151278.3 ncRNA_host +42284 chr22 HAVANA gene 30046276 30047193 918.0 - 0 ENSG00000227201.2 processed_pseudogene CNN2P1 1 OTTHUMG00000151269.1 pseudo_consens,overlapping_locus +42285 chr22 HAVANA gene 30008742 30080480 1439.0 - 0 ENSG00000227117.6 antisense HORMAD2-AS1 1 OTTHUMG00000151289.2 overlapping_locus +42286 chr22 HAVANA gene 30105094 30105408 315.0 - 0 ENSG00000226573.1 processed_pseudogene AC003071.2 1 OTTHUMG00000150895.1 pseudo_consens +42287 chr22 HAVANA gene 30136673 30137681 789.0 - 0 ENSG00000225971.1 processed_pseudogene AC003071.1 1 OTTHUMG00000150894.1 pseudo_consens +42288 chr22 HAVANA gene 30080174 30177075 2575.0 + 0 ENSG00000176635.17 protein_coding HORMAD2 2 OTTHUMG00000150881.3 +42289 chr22 HAVANA gene 30184644 30207109 298.0 - 0 ENSG00000225676.1 antisense AC002378.1 1 OTTHUMG00000150912.1 +42290 chr22 HAVANA gene 30239194 30240538 808.0 + 0 ENSG00000232530.1 antisense LIF-AS1 2 OTTHUMG00000150909.1 +42291 chr22 HAVANA gene 30240447 30246851 3969.0 - 0 ENSG00000128342.4 protein_coding LIF 2 OTTHUMG00000150910.2 +42292 chr22 HAVANA gene 30246205 30246998 794.0 + 0 ENSG00000268812.3 antisense AC004264.1 2 OTTHUMG00000186198.1 +42293 chr22 HAVANA gene 30262829 30266840 2114.0 - 0 ENSG00000099985.3 protein_coding OSM 1 OTTHUMG00000150913.1 +42294 chr22 HAVANA gene 30275215 30276951 1737.0 - 0 ENSG00000279699.1 TEC AC004264.2 2 OTTHUMG00000186199.1 +42295 chr22 HAVANA gene 30285117 30289627 2746.0 - 0 ENSG00000239282.7 protein_coding CASTOR1 2 OTTHUMG00000150929.3 overlapping_locus +42296 chr22 HAVANA gene 30285238 30299482 2057.0 - 0 ENSG00000248751.6 protein_coding AC004997.1 1 OTTHUMG00000162144.1 overlapping_locus +42297 chr22 HAVANA gene 30291990 30327046 7047.0 - 0 ENSG00000099992.15 protein_coding TBC1D10A 1 OTTHUMG00000150924.3 overlapping_locus +42298 chr22 HAVANA gene 30331988 30356947 6329.0 - 0 ENSG00000099995.18 protein_coding SF3A1 2 OTTHUMG00000151005.4 +42299 chr22 HAVANA gene 30356635 30378658 6586.0 + 0 ENSG00000187860.10 protein_coding CCDC157 2 OTTHUMG00000151007.3 +42300 chr22 HAVANA gene 30420512 30420912 401.0 + 0 ENSG00000273350.1 sense_intronic AC004832.5 2 OTTHUMG00000186200.1 overlapping_locus +42301 chr22 ENSEMBL gene 30421045 30421148 104.0 + 0 ENSG00000222915.1 snRNA RNU6-564P 3 +42302 chr22 HAVANA gene 30421206 30421536 331.0 - 0 ENSG00000272689.1 sense_intronic AC004832.4 2 OTTHUMG00000186201.1 overlapping_locus +42303 chr22 HAVANA gene 30368811 30421771 10624.0 - 0 ENSG00000099999.14 protein_coding RNF215 2 OTTHUMG00000151016.6 overlapping_locus +42304 chr22 HAVANA gene 30396857 30425317 5985.0 + 0 ENSG00000100003.17 protein_coding SEC14L2 2 OTTHUMG00000151024.27 ncRNA_host,overlapping_locus +42305 chr22 HAVANA gene 30409255 30428990 1480.0 + 0 ENSG00000249590.7 protein_coding AC004832.3 2 OTTHUMG00000160853.2 ncRNA_host,overlapping_locus +42306 chr22 HAVANA gene 30425530 30429053 1696.0 + 0 ENSG00000242114.5 protein_coding MTFP1 2 OTTHUMG00000151057.5 overlapping_locus +42307 chr22 HAVANA gene 30435544 30436247 704.0 + 0 ENSG00000273428.3 lincRNA AC004832.6 2 OTTHUMG00000186202.1 +42308 chr22 HAVANA gene 30439837 30440318 482.0 + 0 ENSG00000230137.1 processed_pseudogene AC004832.2 2 OTTHUMG00000151268.1 +42309 chr22 HAVANA gene 30447959 30472049 3663.0 - 0 ENSG00000100012.11 protein_coding SEC14L3 1 OTTHUMG00000151259.5 +42310 chr22 HAVANA gene 30481311 30481911 601.0 - 0 ENSG00000214161.3 processed_pseudogene SDC4P 1 OTTHUMG00000151266.1 pseudo_consens +42311 chr22 HAVANA gene 30475364 30492804 2422.0 + 0 ENSG00000181123.8 antisense AC004832.1 1 OTTHUMG00000151260.5 +42312 chr22 HAVANA gene 30488913 30505711 2624.0 - 0 ENSG00000133488.14 protein_coding SEC14L4 1 OTTHUMG00000151258.1 +42313 chr22 HAVANA gene 30542536 30544305 1770.0 + 0 ENSG00000225774.2 processed_pseudogene SIRPAP1 2 OTTHUMG00000151257.1 +42314 chr22 HAVANA gene 30522799 30546682 3392.0 - 0 ENSG00000214491.8 protein_coding SEC14L6 1 OTTHUMG00000151267.2 +42315 chr22 HAVANA gene 30554635 30574587 3017.0 - 0 ENSG00000128242.12 protein_coding GAL3ST1 1 OTTHUMG00000151200.3 +42316 chr22 HAVANA gene 30598309 30606687 249.0 + 0 ENSG00000223831.1 sense_intronic AC005006.1 2 OTTHUMG00000151090.1 +42317 chr22 HAVANA gene 30576625 30607083 4557.0 - 0 ENSG00000100029.17 protein_coding PES1 1 OTTHUMG00000151077.5 +42318 chr22 HAVANA gene 30606838 30627278 3122.0 + 0 ENSG00000185339.8 protein_coding TCN2 1 OTTHUMG00000151095.3 +42319 chr22 HAVANA gene 30653877 30654814 612.0 - 0 ENSG00000250318.1 unprocessed_pseudogene AC003072.1 1 OTTHUMG00000151111.1 pseudo_consens,overlapping_locus +42320 chr22 HAVANA gene 30652051 30667890 4450.0 - 0 ENSG00000167065.13 protein_coding DUSP18 1 OTTHUMG00000151115.4 overlapping_locus +42321 chr22 HAVANA gene 30635652 30669016 5531.0 + 0 ENSG00000100036.12 protein_coding SLC35E4 2 OTTHUMG00000151110.1 +42322 chr22 ENSEMBL gene 30731557 30731641 85.0 + 0 ENSG00000264661.3 miRNA MIR3200 3 +42323 chr22 HAVANA gene 30902219 30902781 563.0 + 0 ENSG00000237977.1 processed_pseudogene EIF4HP2 1 OTTHUMG00000151158.1 pseudo_consens,overlapping_locus +42324 chr22 HAVANA gene 30693782 30907824 6700.0 + 0 ENSG00000184792.15 protein_coding OSBP2 1 OTTHUMG00000151153.6 ncRNA_host,overlapping_locus +42325 chr22 HAVANA gene 30922308 30932449 2695.0 + 0 ENSG00000235989.3 antisense MORC2-AS1 1 OTTHUMG00000150197.3 +42326 chr22 HAVANA gene 30925130 30968298 6258.0 - 0 ENSG00000133422.12 protein_coding MORC2 2 OTTHUMG00000151193.4 +42327 chr22 ENSEMBL gene 30971005 30971149 145.0 + 0 ENSG00000276664.1 misc_RNA RF01882 3 +42328 chr22 ENSEMBL gene 30971296 30971382 87.0 + 0 ENSG00000276057.1 misc_RNA RF01883 3 +42329 chr22 ENSEMBL gene 30972857 30973093 237.0 + 0 ENSG00000276965.1 misc_RNA RF01891 3 +42330 chr22 ENSEMBL gene 30973417 30973597 181.0 + 0 ENSG00000275307.1 misc_RNA RF01892 3 +42331 chr22 HAVANA gene 30977516 30977858 264.0 - 0 ENSG00000269972.1 lincRNA AC004542.1 2 OTTHUMG00000183898.1 overlapping_locus +42332 chr22 HAVANA gene 30976515 30978848 546.0 - 0 ENSG00000269987.1 lincRNA AC004542.2 2 OTTHUMG00000183897.1 overlapping_locus +42333 chr22 HAVANA gene 30969245 30979395 10151.0 + 0 ENSG00000253352.9 bidirectional_promoter_lncRNA TUG1 2 OTTHUMG00000030444.6 ncRNA_host +42334 chr22 ENSEMBL gene 31059989 31060285 297.0 + 0 ENSG00000240186.3 misc_RNA RN7SL633P 3 +42335 chr22 HAVANA gene 31051630 31068327 16698.0 + 0 ENSG00000278920.1 sense_overlapping AC005005.4 2 OTTHUMG00000189271.1 ncRNA_host,overlapping_locus +42336 chr22 HAVANA gene 31082156 31083565 1410.0 - 0 ENSG00000273387.1 antisense AC005005.3 2 OTTHUMG00000186126.1 +42337 chr22 HAVANA gene 31064105 31104757 10242.0 + 0 ENSG00000183963.18 protein_coding SMTN 1 OTTHUMG00000151203.8 overlapping_locus +42338 chr22 HAVANA gene 31113017 31113396 380.0 + 0 ENSG00000235573.2 processed_pseudogene AC005005.2 1 OTTHUMG00000151205.2 pseudo_consens +42339 chr22 HAVANA gene 31104772 31120069 3187.0 - 0 ENSG00000198832.10 protein_coding SELENOM 2 OTTHUMG00000151207.1 +42340 chr22 HAVANA gene 31122731 31134696 4822.0 + 0 ENSG00000185133.13 protein_coding INPP5J 2 OTTHUMG00000151206.11 +42341 chr22 HAVANA gene 31134809 31140607 2697.0 - 0 ENSG00000100078.3 protein_coding PLA2G3 2 OTTHUMG00000151255.1 +42342 chr22 HAVANA gene 31155966 31156647 682.0 - 0 ENSG00000214125.2 processed_pseudogene AC005005.1 1 OTTHUMG00000151250.1 pseudo_consens +42343 chr22 ENSEMBL gene 31160062 31160119 58.0 - 0 ENSG00000264141.1 miRNA MIR3928 3 +42344 chr22 HAVANA gene 31205264 31205616 353.0 - 0 ENSG00000254835.1 antisense RNF185-AS1 2 OTTHUMG00000166845.1 +42345 chr22 HAVANA gene 31160183 31207019 3447.0 + 0 ENSG00000138942.15 protein_coding RNF185 2 OTTHUMG00000151253.3 +42346 chr22 ENSEMBL gene 31222745 31222853 109.0 - 0 ENSG00000199695.1 snRNA RNU6-1128P 3 +42347 chr22 ENSEMBL gene 31230071 31230172 102.0 - 0 ENSG00000202019.1 misc_RNA RF00019 3 +42348 chr22 HAVANA gene 31212239 31280080 6170.0 + 0 ENSG00000182541.17 protein_coding LIMK2 2 OTTHUMG00000151251.2 +42349 chr22 HAVANA gene 31281593 31292534 3805.0 - 0 ENSG00000100100.12 protein_coding PIK3IP1 2 OTTHUMG00000151256.2 +42350 chr22 ENSEMBL gene 31305404 31305512 109.0 + 0 ENSG00000212542.1 rRNA_pseudogene RNA5SP496 3 +42351 chr22 HAVANA gene 31292499 31338021 622.0 + 0 ENSG00000228839.5 antisense PIK3IP1-AS1 1 OTTHUMG00000151249.1 +42352 chr22 HAVANA gene 31325804 31346232 5693.0 - 0 ENSG00000100105.17 protein_coding PATZ1 2 OTTHUMG00000151254.1 +42353 chr22 HAVANA gene 31346777 31348719 1943.0 + 0 ENSG00000213888.3 lincRNA LINC01521 2 OTTHUMG00000187474.1 +42354 chr22 ENSEMBL gene 31388733 31388837 105.0 - 0 ENSG00000206615.1 snRNA RNU6-338P 3 +42355 chr22 HAVANA gene 31454251 31464204 788.0 + 0 ENSG00000240591.1 antisense AL096701.3 2 OTTHUMG00000159059.1 overlapping_locus +42356 chr22 ENSEMBL gene 31479383 31479489 107.0 - 0 ENSG00000199248.1 snRNA RNU6-28P 3 +42357 chr22 HAVANA gene 31436977 31496108 6084.0 - 0 ENSG00000184708.17 protein_coding EIF4ENIF1 1 OTTHUMG00000030793.12 ncRNA_host +42358 chr22 HAVANA gene 31521199 31521592 394.0 - 0 ENSG00000233733.1 processed_pseudogene H2AFZP6 1 OTTHUMG00000030795.2 pseudo_consens +42359 chr22 HAVANA gene 31399523 31530634 2279.0 + 0 ENSG00000185721.12 protein_coding DRG1 2 OTTHUMG00000030792.11 overlapping_locus +42360 chr22 HAVANA gene 31538352 31538589 238.0 - 0 ENSG00000229169.1 processed_pseudogene AL096701.2 1 OTTHUMG00000030797.2 pseudo_consens +42361 chr22 HAVANA gene 31559483 31559939 457.0 + 0 ENSG00000214093.3 processed_pseudogene AL096701.1 1 OTTHUMG00000030794.2 pseudo_consens,overlapping_locus +42362 chr22 HAVANA gene 31488688 31618586 12174.0 + 0 ENSG00000198089.15 protein_coding SFI1 1 OTTHUMG00000030249.14 overlapping_locus +42363 chr22 ENSEMBL gene 31621467 31621531 65.0 - 0 ENSG00000284082.1 miRNA MIR7109 3 +42364 chr22 HAVANA gene 31618491 31662432 5002.0 - 0 ENSG00000241878.11 protein_coding PISD 1 OTTHUMG00000030252.28 ncRNA_host +42365 chr22 HAVANA gene 31676256 31750140 11809.0 - 0 ENSG00000183530.13 protein_coding PRR14L 2 OTTHUMG00000030139.15 +42366 chr22 ENSEMBL gene 31757202 31757498 297.0 + 0 ENSG00000242251.3 misc_RNA RN7SL20P 3 +42367 chr22 HAVANA gene 31816379 31817491 477.0 - 0 ENSG00000236132.1 processed_pseudogene AL022331.1 1 OTTHUMG00000030879.2 pseudo_consens +42368 chr22 ENSEMBL gene 31837238 31837298 61.0 + 0 ENSG00000252909.1 snRNA RNU6-201P 3 +42369 chr22 HAVANA gene 31890344 31891434 490.0 - 0 ENSG00000227813.1 processed_pseudogene Z82190.1 1 OTTHUMG00000030407.2 pseudo_consens +42370 chr22 HAVANA gene 31753867 31908033 17331.0 + 0 ENSG00000100150.17 protein_coding DEPDC5 2 OTTHUMG00000030926.26 ncRNA_host,overlapping_locus +42371 chr22 HAVANA gene 31933521 31945518 1754.0 - 0 ENSG00000128254.13 processed_transcript C22orf24 2 OTTHUMG00000030834.4 +42372 chr22 HAVANA gene 31754899 31956243 1914.0 + 0 ENSG00000285404.1 protein_coding Z82190.2 2 OTTHUMG00000192528.1 ncRNA_host,overlapping_locus +42373 chr22 HAVANA gene 31944461 31957603 2453.0 + 0 ENSG00000128245.14 protein_coding YWHAH 1 OTTHUMG00000030833.9 overlapping_locus,retrogene +42374 chr22 HAVANA gene 31963357 31970400 473.0 + 0 ENSG00000227519.1 lincRNA AL008719.1 2 OTTHUMG00000058207.1 +42375 chr22 HAVANA gene 31970823 31973475 336.0 + 0 ENSG00000230866.1 lincRNA LINC02558 2 OTTHUMG00000150005.1 +42376 chr22 ENSEMBL gene 31981147 31981427 281.0 - 0 ENSG00000240647.3 misc_RNA RN7SL305P 3 +42377 chr22 HAVANA gene 32039490 32039896 407.0 + 0 ENSG00000232346.1 processed_pseudogene Z74021.1 1 OTTHUMG00000030769.2 pseudo_consens +42378 chr22 HAVANA gene 32043032 32113029 5310.0 + 0 ENSG00000100170.9 protein_coding SLC5A1 2 OTTHUMG00000030768.5 +42379 chr22 HAVANA gene 32129689 32130612 630.0 + 0 ENSG00000237439.1 transcribed_unprocessed_pseudogene Z83839.1 2 OTTHUMG00000128471.1 overlapping_locus +42380 chr22 HAVANA gene 32121977 32133469 827.0 + 0 ENSG00000234479.2 transcribed_unprocessed_pseudogene AP1B1P1 2 OTTHUMG00000030158.4 overlapping_locus +42381 chr22 HAVANA gene 32134028 32134133 106.0 + 0 ENSG00000232707.1 unprocessed_pseudogene AP1B1P2 2 OTTHUMG00000030159.2 +42382 chr22 HAVANA gene 32141267 32143272 274.0 + 0 ENSG00000239674.2 lincRNA Z83839.2 1 OTTHUMG00000073689.2 +42383 chr22 HAVANA gene 32149006 32159322 2055.0 - 0 ENSG00000205856.3 protein_coding C22orf42 2 OTTHUMG00000030380.3 +42384 chr22 HAVANA gene 32159454 32160392 562.0 - 0 ENSG00000230120.1 lincRNA AL008723.2 2 OTTHUMG00000150003.1 +42385 chr22 ENSEMBL gene 32188400 32188487 88.0 - 0 ENSG00000275656.1 misc_RNA RF02171 3 +42386 chr22 HAVANA gene 32199919 32200234 316.0 + 0 ENSG00000254127.1 IG_C_pseudogene IGLCOR22-1 2 OTTHUMG00000030375.2 +42387 chr22 HAVANA gene 32190435 32203477 2718.0 - 0 ENSG00000128253.13 protein_coding RFPL2 2 OTTHUMG00000030374.4 +42388 chr22 HAVANA gene 32218476 32255341 2030.0 - 0 ENSG00000100191.5 protein_coding SLC5A4 2 OTTHUMG00000150007.2 +42389 chr22 HAVANA gene 32205115 32269666 876.0 + 0 ENSG00000242082.1 antisense SLC5A4-AS1 2 OTTHUMG00000150008.2 overlapping_locus +42390 chr22 HAVANA gene 32269381 32273110 3730.0 + 0 ENSG00000214076.3 processed_pseudogene CPSF1P1 1 OTTHUMG00000030378.3 pseudo_consens,overlapping_locus +42391 chr22 HAVANA gene 32273420 32277186 590.0 + 0 ENSG00000224050.1 lincRNA AL008723.1 2 OTTHUMG00000073688.1 +42392 chr22 HAVANA gene 32284683 32285131 449.0 + 0 ENSG00000273325.1 lincRNA AL008723.3 2 OTTHUMG00000186203.1 +42393 chr22 HAVANA gene 32327171 32343105 361.0 - 0 ENSG00000234626.1 antisense AL021937.3 1 OTTHUMG00000058271.1 +42394 chr22 HAVANA gene 32356676 32356988 313.0 - 0 ENSG00000271093.1 IG_C_pseudogene IGLCOR22-2 2 OTTHUMG00000184769.1 +42395 chr22 HAVANA gene 32354885 32361161 1501.0 + 0 ENSG00000128276.10 protein_coding RFPL3 2 OTTHUMG00000030290.4 +42396 chr22 ENSEMBL gene 32362972 32363059 88.0 + 0 ENSG00000274617.1 misc_RNA RF02171 3 +42397 chr22 ENSEMBL gene 32368497 32368567 71.0 + 0 ENSG00000274170.1 misc_RNA RF02172 3 +42398 chr22 HAVANA gene 32376682 32377135 330.0 + 0 ENSG00000243519.1 IG_V_pseudogene IGLVIVOR22-2 2 OTTHUMG00000099456.1 overlapping_locus +42399 chr22 HAVANA gene 32359906 32382052 1790.0 - 0 ENSG00000205853.10 lincRNA RFPL3S 2 OTTHUMG00000030295.6 +42400 chr22 HAVANA gene 32376664 32384343 1558.0 + 0 ENSG00000230736.2 lincRNA AL021937.1 2 OTTHUMG00000058267.1 overlapping_locus +42401 chr22 HAVANA gene 32383786 32385631 444.0 + 0 ENSG00000241954.1 lincRNA AL021937.4 1 OTTHUMG00000150006.1 overlapping_locus +42402 chr22 HAVANA gene 32386668 32386868 201.0 + 0 ENSG00000232218.1 unprocessed_pseudogene AL021937.2 2 OTTHUMG00000099457.1 +42403 chr22 HAVANA gene 32387582 32412255 2948.0 - 0 ENSG00000100220.11 protein_coding RTCB 2 OTTHUMG00000030300.7 +42404 chr22 HAVANA gene 32413847 32464484 2228.0 - 0 ENSG00000184459.8 protein_coding BPIFC 2 OTTHUMG00000058273.2 +42405 chr22 HAVANA gene 32474676 32498829 8521.0 + 0 ENSG00000100225.17 protein_coding FBXO7 1 OTTHUMG00000030674.11 +42406 chr22 HAVANA gene 32583300 32584204 457.0 + 0 ENSG00000236054.1 antisense Z82246.1 1 OTTHUMG00000058269.1 +42407 chr22 ENSEMBL gene 32635102 32635198 97.0 - 0 ENSG00000251890.1 rRNA_pseudogene RNA5SP497 3 +42408 chr22 HAVANA gene 32783177 32784982 147.0 + 0 ENSG00000229673.1 antisense Z73495.1 2 OTTHUMG00000058268.1 +42409 chr22 HAVANA gene 32801701 32863043 4603.0 + 0 ENSG00000100234.11 protein_coding TIMP3 2 OTTHUMG00000030784.3 +42410 chr22 HAVANA gene 33014980 33015461 265.0 + 0 ENSG00000228194.1 processed_pseudogene Z83846.1 1 OTTHUMG00000030096.2 pseudo_consens +42411 chr22 HAVANA gene 32512552 33058372 5444.0 - 0 ENSG00000185666.14 protein_coding SYN3 2 OTTHUMG00000031004.24 +42412 chr22 HAVANA gene 33105383 33106059 437.0 - 0 ENSG00000228622.1 lincRNA Z82198.1 1 OTTHUMG00000030382.2 +42413 chr22 HAVANA gene 33108529 33116294 550.0 + 0 ENSG00000231253.1 lincRNA LINC01640 2 OTTHUMG00000150002.1 +42414 chr22 HAVANA gene 33137140 33137338 199.0 + 0 ENSG00000233632.1 processed_pseudogene Z82198.3 2 OTTHUMG00000155747.1 +42415 chr22 HAVANA gene 33164063 33166439 567.0 + 0 ENSG00000232073.1 antisense Z82198.2 1 OTTHUMG00000150009.1 +42416 chr22 HAVANA gene 33320865 33322813 484.0 + 0 ENSG00000230741.1 antisense Z82173.1 2 OTTHUMG00000150925.1 +42417 chr22 ENSEMBL gene 33436582 33436669 88.0 - 0 ENSG00000266012.1 miRNA MIR4764 3 +42418 chr22 ENSEMBL gene 33704786 33704920 135.0 - 0 ENSG00000253007.2 snoRNA SNORA50B 3 +42419 chr22 ENSEMBL gene 33704786 33704922 137.0 - 0 ENSG00000281295.1 snoRNA SNORA50B 3 +42420 chr22 HAVANA gene 33723832 33724912 558.0 - 0 ENSG00000232081.1 sense_intronic LARGE-IT1 2 OTTHUMG00000150915.1 overlapping_locus +42421 chr22 HAVANA gene 33725014 33750843 2929.0 + 0 ENSG00000224973.5 processed_transcript LARGE-AS1 1 OTTHUMG00000150916.3 +42422 chr22 HAVANA gene 33922422 33922766 345.0 + 0 ENSG00000273082.1 antisense Z73429.1 2 OTTHUMG00000186104.1 +42423 chr22 HAVANA gene 33162226 33922841 10687.0 - 0 ENSG00000133424.20 protein_coding LARGE1 2 OTTHUMG00000150914.20 ncRNA_host,overlapping_locus +42424 chr22 HAVANA gene 34017473 34188425 757.0 + 0 ENSG00000236052.1 lincRNA LINC01643 2 OTTHUMG00000150928.3 +42425 chr22 HAVANA gene 34208141 34209262 519.0 - 0 ENSG00000224404.1 lincRNA Z68323.1 1 OTTHUMG00000150930.1 +42426 chr22 HAVANA gene 34589085 34591278 2194.0 - 0 ENSG00000235485.1 processed_pseudogene AL021877.1 1 OTTHUMG00000150932.1 pseudo_consens +42427 chr22 HAVANA gene 34641179 34651862 10684.0 + 0 ENSG00000280356.1 lincRNA AL021877.2 2 OTTHUMG00000189274.1 +42428 chr22 HAVANA gene 34703126 34704885 768.0 - 0 ENSG00000234891.1 lincRNA Z82196.1 1 OTTHUMG00000150931.1 +42429 chr22 HAVANA gene 34711908 34724919 549.0 - 0 ENSG00000237316.1 lincRNA Z82196.2 2 OTTHUMG00000150933.1 +42430 chr22 HAVANA gene 34997719 35002862 202.0 - 0 ENSG00000227895.5 lincRNA ISX-AS1 2 OTTHUMG00000150934.4 +42431 chr22 HAVANA gene 35066136 35087387 3384.0 + 0 ENSG00000175329.12 protein_coding ISX 2 OTTHUMG00000150962.2 +42432 chr22 HAVANA gene 35122661 35127419 364.0 + 0 ENSG00000273068.1 lincRNA Z99755.2 2 OTTHUMG00000185932.1 +42433 chr22 HAVANA gene 35164304 35165347 380.0 + 0 ENSG00000238153.1 processed_pseudogene Z99755.1 2 OTTHUMG00000150959.1 +42434 chr22 HAVANA gene 35119824 35231056 648.0 - 0 ENSG00000233080.3 transcribed_processed_pseudogene LINC01399 1 OTTHUMG00000155624.2 pseudo_consens +42435 chr22 ENSEMBL gene 35249772 35249833 62.0 + 0 ENSG00000238584.1 snRNA RNU7-167P 3 +42436 chr22 HAVANA gene 35257452 35295807 6006.0 + 0 ENSG00000100281.13 protein_coding HMGXB4 2 OTTHUMG00000150439.4 +42437 chr22 HAVANA gene 35298838 35299541 385.0 - 0 ENSG00000273176.1 antisense AL008635.1 2 OTTHUMG00000186162.1 +42438 chr22 ENSEMBL gene 35335640 35335758 119.0 + 0 ENSG00000266320.1 miRNA MIR3909 3 +42439 chr22 ENSEMBL gene 35336721 35336799 79.0 - 0 ENSG00000274280.1 miRNA MIR6069 3 +42440 chr22 HAVANA gene 35299275 35347994 5871.0 + 0 ENSG00000100284.20 protein_coding TOM1 2 OTTHUMG00000150958.5 ncRNA_host +42441 chr22 HAVANA gene 35372174 35372621 448.0 + 0 ENSG00000282602.1 lincRNA Z82244.2 2 OTTHUMG00000191310.1 +42442 chr22 HAVANA gene 35376422 35377261 840.0 + 0 ENSG00000282041.1 lincRNA Z82244.1 2 OTTHUMG00000191311.1 +42443 chr22 HAVANA gene 35380361 35394214 2405.0 + 0 ENSG00000100292.16 protein_coding HMOX1 2 OTTHUMG00000150960.3 +42444 chr22 HAVANA gene 35400063 35425430 7338.0 + 0 ENSG00000100297.15 protein_coding MCM5 1 OTTHUMG00000150961.18 +42445 chr22 HAVANA gene 35501861 35503586 1726.0 - 0 ENSG00000233388.2 processed_pseudogene AL022334.1 1 OTTHUMG00000150608.2 pseudo_consens +42446 chr22 HAVANA gene 35526932 35527415 484.0 + 0 ENSG00000273044.1 lincRNA AL022334.2 2 OTTHUMG00000186105.1 +42447 chr22 HAVANA gene 35540868 35554001 3412.0 + 0 ENSG00000100302.6 protein_coding RASD2 2 OTTHUMG00000150607.1 +42448 chr22 HAVANA gene 35626988 35635134 852.0 - 0 ENSG00000268818.2 sense_intronic AL049747.1 2 OTTHUMG00000187476.1 overlapping_locus +42449 chr22 HAVANA gene 35606764 35637951 2168.0 - 0 ENSG00000198125.12 protein_coding MB 1 OTTHUMG00000150606.11 overlapping_locus +42450 chr22 HAVANA gene 35648395 35668409 10121.0 + 0 ENSG00000221963.5 protein_coding APOL6 2 OTTHUMG00000150615.2 +42451 chr22 HAVANA gene 35685940 35689373 601.0 + 0 ENSG00000228587.1 lincRNA AL049748.1 1 OTTHUMG00000150586.1 +42452 chr22 HAVANA gene 35703803 35704176 374.0 + 0 ENSG00000226336.2 processed_pseudogene MRPS16P3 1 OTTHUMG00000150587.2 pseudo_consens +42453 chr22 HAVANA gene 35717872 35729483 1438.0 + 0 ENSG00000128313.2 protein_coding APOL5 2 OTTHUMG00000150588.1 +42454 chr22 HAVANA gene 35897270 35898404 1135.0 - 0 ENSG00000237406.1 processed_pseudogene NDUFA9P1 1 OTTHUMG00000150636.1 pseudo_consens,overlapping_locus +42455 chr22 HAVANA gene 35992321 36000469 8149.0 + 0 ENSG00000279652.1 lincRNA Z82217.1 2 OTTHUMG00000189270.1 +42456 chr22 HAVANA gene 35738736 36028425 10014.0 - 0 ENSG00000100320.22 protein_coding RBFOX2 1 OTTHUMG00000150585.11 overlapping_locus +42457 chr22 HAVANA gene 36066533 36070110 3578.0 + 0 ENSG00000279927.1 lincRNA Z95114.4 2 OTTHUMG00000189181.1 +42458 chr22 HAVANA gene 36071000 36085573 14574.0 + 0 ENSG00000279217.1 lincRNA Z95114.1 2 OTTHUMG00000189182.1 +42459 chr22 HAVANA gene 36091148 36093352 2205.0 + 0 ENSG00000279714.1 lincRNA Z95114.2 2 OTTHUMG00000189183.1 +42460 chr22 HAVANA gene 36137430 36139350 1921.0 - 0 ENSG00000279805.1 TEC Z95114.3 2 OTTHUMG00000172731.1 +42461 chr22 HAVANA gene 36140330 36166177 5901.0 - 0 ENSG00000128284.19 protein_coding APOL3 1 OTTHUMG00000150632.19 +42462 chr22 HAVANA gene 36172422 36172779 358.0 + 0 ENSG00000233764.1 processed_pseudogene MTCO1P20 2 OTTHUMG00000150633.1 +42463 chr22 HAVANA gene 36172934 36173948 673.0 + 0 ENSG00000231576.1 processed_pseudogene MTCO2P20 2 OTTHUMG00000150631.1 +42464 chr22 HAVANA gene 36174261 36174822 562.0 + 0 ENSG00000237948.1 processed_pseudogene MTATP6P20 2 OTTHUMG00000150639.1 +42465 chr22 HAVANA gene 36175167 36175854 688.0 + 0 ENSG00000225557.1 processed_pseudogene MTCO3P20 2 OTTHUMG00000150635.3 +42466 chr22 HAVANA gene 36175857 36176526 670.0 + 0 ENSG00000237129.1 processed_pseudogene MTCYBP34 2 OTTHUMG00000150638.1 +42467 chr22 HAVANA gene 36178554 36179385 832.0 + 0 ENSG00000229088.1 processed_pseudogene MTND1P10 2 OTTHUMG00000150637.1 +42468 chr22 HAVANA gene 36189124 36204840 4377.0 - 0 ENSG00000100336.17 protein_coding APOL4 1 OTTHUMG00000150630.23 +42469 chr22 HAVANA gene 36226203 36239954 3484.0 - 0 ENSG00000128335.13 protein_coding APOL2 2 OTTHUMG00000150634.5 +42470 chr22 HAVANA gene 36253010 36267530 3519.0 + 0 ENSG00000100342.20 protein_coding APOL1 2 OTTHUMG00000030427.9 +42471 chr22 ENSEMBL gene 36286847 36286907 61.0 - 0 ENSG00000278420.1 miRNA MIR6819 3 +42472 chr22 HAVANA gene 36281277 36388067 9012.0 - 0 ENSG00000100345.21 protein_coding MYH9 1 OTTHUMG00000030429.9 ncRNA_host +42473 chr22 HAVANA gene 36388626 36396517 510.0 + 0 ENSG00000223695.1 lincRNA FO393418.1 1 OTTHUMG00000150616.1 +42474 chr22 HAVANA gene 36421273 36421644 372.0 - 0 ENSG00000237668.1 processed_pseudogene RPS15AP38 1 OTTHUMG00000150595.1 pseudo_consens +42475 chr22 ENSEMBL gene 36440880 36440970 91.0 - 0 ENSG00000252225.1 misc_RNA RF00019 3 +42476 chr22 HAVANA gene 36445395 36454944 372.0 - 0 ENSG00000228719.1 lincRNA AL022313.2 2 OTTHUMG00000150597.2 +42477 chr22 HAVANA gene 36467036 36482030 2050.0 - 0 ENSG00000100348.9 protein_coding TXN2 2 OTTHUMG00000150596.3 +42478 chr22 HAVANA gene 36487190 36507101 5577.0 - 0 ENSG00000100350.14 protein_coding FOXRED2 2 OTTHUMG00000044614.6 +42479 chr22 HAVANA gene 36510850 36529436 4070.0 - 0 ENSG00000100353.17 protein_coding EIF3D 1 OTTHUMG00000150599.4 +42480 chr22 HAVANA gene 36536656 36537604 444.0 - 0 ENSG00000188078.5 unprocessed_pseudogene AL022313.1 1 OTTHUMG00000150600.1 pseudo_consens +42481 chr22 HAVANA gene 36552165 36552700 405.0 + 0 ENSG00000229971.1 antisense AL022313.3 2 OTTHUMG00000150598.1 +42482 chr22 HAVANA gene 36560870 36562915 2046.0 - 0 ENSG00000261675.1 sense_overlapping AL022313.4 2 OTTHUMG00000176420.1 +42483 chr22 HAVANA gene 36563921 36703558 3224.0 - 0 ENSG00000166862.6 protein_coding CACNG2 2 OTTHUMG00000030612.3 +42484 chr22 HAVANA gene 36703918 36721472 632.0 + 0 ENSG00000234688.1 antisense AL049749.1 1 OTTHUMG00000150584.1 +42485 chr22 HAVANA gene 36758202 36776256 8009.0 - 0 ENSG00000100360.14 protein_coding IFT27 2 OTTHUMG00000150544.18 +42486 chr22 HAVANA gene 36800684 36819479 1050.0 - 0 ENSG00000100362.12 protein_coding PVALB 2 OTTHUMG00000150547.14 +42487 chr22 HAVANA gene 36816326 36819736 549.0 + 0 ENSG00000234979.1 antisense Z82185.1 2 OTTHUMG00000150549.1 +42488 chr22 HAVANA gene 36847372 36870441 1218.0 - 0 ENSG00000183822.3 antisense NCF4-AS1 2 OTTHUMG00000150550.2 +42489 chr22 HAVANA gene 36860988 36878015 1759.0 + 0 ENSG00000100365.14 protein_coding NCF4 2 OTTHUMG00000150548.3 +42490 chr22 HAVANA gene 36913628 36940449 5000.0 + 0 ENSG00000100368.13 protein_coding CSF2RB 2 OTTHUMG00000150546.2 +42491 chr22 HAVANA gene 36950529 36953723 391.0 - 0 ENSG00000232254.1 unprocessed_pseudogene CSF2RBP1 2 OTTHUMG00000150535.1 +42492 chr22 HAVANA gene 36965248 36968172 992.0 + 0 ENSG00000215403.1 antisense LL22NC01-81G9.3 2 OTTHUMG00000150539.1 +42493 chr22 HAVANA gene 36991120 37007841 1154.0 - 0 ENSG00000185264.11 protein_coding TEX33 2 OTTHUMG00000150531.3 +42494 chr22 ENSEMBL gene 37013225 37013319 95.0 + 0 ENSG00000252412.1 misc_RNA RF00019 3 +42495 chr22 HAVANA gene 37010859 37020183 1937.0 - 0 ENSG00000128311.13 protein_coding TST 2 OTTHUMG00000150533.4 +42496 chr22 HAVANA gene 37019635 37029822 6760.0 + 0 ENSG00000128309.16 protein_coding MPST 1 OTTHUMG00000150543.2 +42497 chr22 ENSEMBL gene 37055033 37055347 315.0 - 0 ENSG00000201078.1 misc_RNA RN7SKP214 3 +42498 chr22 HAVANA gene 37051736 37063390 2786.0 + 0 ENSG00000100379.17 protein_coding KCTD17 1 OTTHUMG00000150532.3 +42499 chr22 HAVANA gene 37080068 37082847 464.0 + 0 ENSG00000231467.2 antisense AL022314.1 2 OTTHUMG00000150536.2 +42500 chr22 HAVANA gene 37065436 37109713 4232.0 - 0 ENSG00000187045.18 protein_coding TMPRSS6 1 OTTHUMG00000150541.5 +42501 chr22 HAVANA gene 37125838 37175054 4700.0 - 0 ENSG00000100385.13 protein_coding IL2RB 2 OTTHUMG00000150534.3 +42502 chr22 HAVANA gene 37166757 37182850 630.0 + 0 ENSG00000235237.1 antisense Z82188.2 2 OTTHUMG00000150530.1 +42503 chr22 HAVANA gene 37180167 37199385 7143.0 - 0 ENSG00000133466.13 protein_coding C1QTNF6 2 OTTHUMG00000150538.1 +42504 chr22 HAVANA gene 37204238 37212322 4521.0 - 0 ENSG00000278195.1 protein_coding SSTR3 2 OTTHUMG00000150537.3 retrogene +42505 chr22 HAVANA gene 37215738 37215891 154.0 - 0 ENSG00000226233.1 processed_pseudogene Z82188.1 1 OTTHUMG00000150542.1 pseudo_consens +42506 chr22 HAVANA gene 37225261 37244448 2532.0 - 0 ENSG00000128340.14 protein_coding RAC2 1 OTTHUMG00000150540.2 +42507 chr22 HAVANA gene 37282027 37315345 6161.0 + 0 ENSG00000100055.20 protein_coding CYTH4 1 OTTHUMG00000150562.20 +42508 chr22 HAVANA gene 37352190 37354839 1965.0 - 0 ENSG00000237862.1 sense_intronic Z94160.1 1 OTTHUMG00000150559.1 overlapping_locus +42509 chr22 HAVANA gene 37371684 37372858 910.0 + 0 ENSG00000272694.1 antisense Z94160.2 2 OTTHUMG00000185931.1 +42510 chr22 HAVANA gene 37339583 37427445 2118.0 - 0 ENSG00000243902.6 sense_overlapping ELFN2 2 OTTHUMG00000150561.1 overlapping_locus +42511 chr22 HAVANA gene 37367960 37427470 8782.0 - 0 ENSG00000166897.14 protein_coding ELFN2 2 OTTHUMG00000150558.3 overlapping_locus +42512 chr22 HAVANA gene 37469063 37486401 3042.0 - 0 ENSG00000100060.17 protein_coding MFNG 2 OTTHUMG00000150560.3 +42513 chr22 HAVANA gene 37490362 37519542 5652.0 - 0 ENSG00000100065.14 protein_coding CARD10 2 OTTHUMG00000150592.3 +42514 chr22 HAVANA gene 37550026 37551735 498.0 + 0 ENSG00000225867.1 antisense AL022315.1 2 OTTHUMG00000150593.1 +42515 chr22 HAVANA gene 37560447 37569405 2573.0 + 0 ENSG00000128283.6 protein_coding CDC42EP1 2 OTTHUMG00000150591.5 +42516 chr22 ENSEMBL gene 37578669 37578922 254.0 + 0 ENSG00000273866.1 misc_RNA RF00017 3 +42517 chr22 HAVANA gene 37570246 37582616 828.0 - 0 ENSG00000100079.6 protein_coding LGALS2 2 OTTHUMG00000150590.21 +42518 chr22 HAVANA gene 37608475 37633564 9369.0 + 0 ENSG00000100083.18 protein_coding GGA1 2 OTTHUMG00000030985.27 +42519 chr22 HAVANA gene 37634654 37656119 4892.0 + 0 ENSG00000100092.22 protein_coding SH3BP1 2 OTTHUMG00000030996.8 overlapping_locus +42520 chr22 HAVANA gene 37641832 37658377 1945.0 - 0 ENSG00000233360.4 antisense Z83844.2 2 OTTHUMG00000150662.1 +42521 chr22 HAVANA gene 37639693 37666932 3123.0 + 0 ENSG00000285304.1 protein_coding Z83844.3 2 OTTHUMG00000192478.1 overlapping_locus +42522 chr22 HAVANA gene 37658727 37666934 2203.0 + 0 ENSG00000241360.1 protein_coding PDXP 2 OTTHUMG00000044618.3 overlapping_locus +42523 chr22 ENSEMBL gene 37669464 37669739 276.0 - 0 ENSG00000241333.3 misc_RNA RN7SL385P 3 +42524 chr22 HAVANA gene 37675608 37679806 1099.0 + 0 ENSG00000100097.11 protein_coding LGALS1 2 OTTHUMG00000150661.1 +42525 chr22 HAVANA gene 37681673 37693478 3589.0 + 0 ENSG00000273899.4 protein_coding NOL12 2 OTTHUMG00000150660.5 overlapping_locus +42526 chr22 HAVANA gene 37686414 37726503 4904.0 + 0 ENSG00000100101.15 protein_coding Z83844.1 2 OTTHUMG00000188619.2 overlapping_locus +42527 chr22 HAVANA gene 37696988 37776556 12254.0 + 0 ENSG00000100106.20 protein_coding TRIOBP 2 OTTHUMG00000150657.11 overlapping_locus +42528 chr22 HAVANA gene 37805093 37807436 2344.0 + 0 ENSG00000189060.5 protein_coding H1F0 2 OTTHUMG00000150659.1 +42529 chr22 HAVANA gene 37807905 37817176 2104.0 + 0 ENSG00000100116.16 protein_coding GCAT 1 OTTHUMG00000150664.4 +42530 chr22 HAVANA gene 37823382 37825495 1157.0 + 0 ENSG00000128310.2 protein_coding GALR3 2 OTTHUMG00000150658.1 +42531 chr22 ENSEMBL gene 37844272 37844371 100.0 - 0 ENSG00000284197.1 miRNA MIR658 3 +42532 chr22 ENSEMBL gene 37847678 37847774 97.0 - 0 ENSG00000207696.1 miRNA MIR659 3 +42533 chr22 HAVANA gene 37830855 37849327 4487.0 - 0 ENSG00000100124.14 protein_coding ANKRD54 2 OTTHUMG00000150663.5 ncRNA_host +42534 chr22 HAVANA gene 37848868 37889407 4296.0 + 0 ENSG00000100129.17 protein_coding EIF3L 1 OTTHUMG00000150671.6 overlapping_locus +42535 chr22 ENSEMBL gene 37891347 37891448 102.0 + 0 ENSG00000207227.1 snRNA RNU6-900P 3 +42536 chr22 HAVANA gene 37876148 37895563 19416.0 + 0 ENSG00000279738.1 sense_overlapping AL022311.1 2 OTTHUMG00000189205.1 ncRNA_host,overlapping_locus +42537 chr22 HAVANA gene 37905657 37942822 5968.0 + 0 ENSG00000100139.13 protein_coding MICALL1 2 OTTHUMG00000150670.6 +42538 chr22 HAVANA gene 37943050 37944898 1849.0 + 0 ENSG00000278948.1 TEC AL031587.5 2 OTTHUMG00000151195.1 +42539 chr22 HAVANA gene 37950965 37951778 814.0 + 0 ENSG00000272582.1 antisense AL031587.3 2 OTTHUMG00000186180.1 overlapping_locus +42540 chr22 HAVANA gene 37943050 37953669 2299.0 - 0 ENSG00000128346.10 protein_coding C22orf23 2 OTTHUMG00000150672.3 +42541 chr22 ENSEMBL gene 37967563 37967624 62.0 + 0 ENSG00000284289.1 miRNA MIR6820 3 +42542 chr22 HAVANA gene 37970686 37987422 3710.0 - 0 ENSG00000100146.16 protein_coding SOX10 1 OTTHUMG00000149913.4 +42543 chr22 ENSEMBL gene 37988794 37988853 60.0 + 0 ENSG00000284266.1 miRNA MIR4534 3 +42544 chr22 HAVANA gene 38032165 38034228 1055.0 - 0 ENSG00000222044.1 antisense AL031587.1 2 OTTHUMG00000153513.2 +42545 chr22 HAVANA gene 37952607 38041915 7042.0 + 0 ENSG00000100142.14 protein_coding POLR2F 1 OTTHUMG00000151160.4 ncRNA_host,overlapping_locus +42546 chr22 HAVANA gene 38043230 38043920 691.0 + 0 ENSG00000273214.1 lincRNA AL031587.4 2 OTTHUMG00000186181.1 +42547 chr22 HAVANA gene 38057180 38073940 414.0 - 0 ENSG00000233739.1 antisense AL031587.2 2 OTTHUMG00000151194.1 +42548 chr22 HAVANA gene 38056311 38075701 4371.0 + 0 ENSG00000100151.15 protein_coding PICK1 2 OTTHUMG00000151159.4 +42549 chr22 HAVANA gene 38078134 38084093 2203.0 - 0 ENSG00000100156.10 protein_coding SLC16A8 2 OTTHUMG00000151196.2 +42550 chr22 HAVANA gene 38090127 38091559 1433.0 + 0 ENSG00000272720.1 lincRNA AL022322.1 2 OTTHUMG00000186146.1 +42551 chr22 HAVANA gene 38084889 38110670 2146.0 - 0 ENSG00000128298.16 protein_coding BAIAP2L2 1 OTTHUMG00000151197.4 +42552 chr22 HAVANA gene 38130216 38150612 20397.0 + 0 ENSG00000279080.1 antisense AL022322.2 2 OTTHUMG00000189202.1 +42553 chr22 HAVANA gene 38111495 38205690 6758.0 - 0 ENSG00000184381.18 protein_coding PLA2G6 1 OTTHUMG00000151246.5 +42554 chr22 HAVANA gene 38200767 38216511 5615.0 + 0 ENSG00000185022.11 protein_coding MAFF 2 OTTHUMG00000151163.4 +42555 chr22 ENSEMBL gene 38231720 38231993 274.0 + 0 ENSG00000241693.2 misc_RNA RN7SL704P 3 +42556 chr22 HAVANA gene 38231320 38232248 297.0 + 0 ENSG00000235246.1 antisense AL020993.1 1 OTTHUMG00000151248.1 ncRNA_host +42557 chr22 HAVANA gene 38219291 38273034 7080.0 - 0 ENSG00000198792.12 protein_coding TMEM184B 1 OTTHUMG00000030557.17 overlapping_locus +42558 chr22 ENSEMBL gene 38281028 38281289 262.0 - 0 ENSG00000277385.1 misc_RNA RF00017 3 +42559 chr22 HAVANA gene 38290691 38318084 6246.0 - 0 ENSG00000213923.11 protein_coding CSNK1E 1 OTTHUMG00000151135.4 overlapping_locus +42560 chr22 HAVANA gene 38387918 38388857 541.0 - 0 ENSG00000229955.1 sense_intronic Z98749.1 2 OTTHUMG00000151134.1 overlapping_locus +42561 chr22 HAVANA gene 38291918 38398522 1770.0 - 0 ENSG00000283900.1 protein_coding TPTEP2-CSNK1E 2 OTTHUMG00000192148.1 +42562 chr22 HAVANA gene 38335762 38398929 3851.0 - 0 ENSG00000244627.5 transcribed_unprocessed_pseudogene TPTEP2 2 OTTHUMG00000151245.2 overlapping_locus +42563 chr22 HAVANA gene 38424288 38427336 556.0 + 0 ENSG00000228620.1 antisense Z97056.1 1 OTTHUMG00000151130.1 +42564 chr22 HAVANA gene 38426327 38455199 2065.0 - 0 ENSG00000168135.4 protein_coding KCNJ4 2 OTTHUMG00000151131.1 retrogene +42565 chr22 HAVANA gene 38468062 38483447 1929.0 + 0 ENSG00000100196.10 protein_coding KDELR3 2 OTTHUMG00000153520.1 +42566 chr22 HAVANA gene 38483440 38507660 9995.0 - 0 ENSG00000100201.20 protein_coding DDX17 2 OTTHUMG00000151136.5 +42567 chr22 HAVANA gene 38518949 38570286 3524.0 - 0 ENSG00000100206.9 protein_coding DMC1 2 OTTHUMG00000151088.17 +42568 chr22 HAVANA gene 38574931 38575431 164.0 - 0 ENSG00000224279.2 processed_pseudogene RPS29P31 1 OTTHUMG00000155623.2 pseudo_consens +42569 chr22 HAVANA gene 38578120 38656629 10781.0 - 0 ENSG00000184949.15 protein_coding FAM227A 1 OTTHUMG00000151133.7 +42570 chr22 HAVANA gene 38666508 38668750 410.0 - 0 ENSG00000230912.1 antisense AL021707.4 2 OTTHUMG00000150992.1 overlapping_locus +42571 chr22 HAVANA gene 38656636 38673854 2348.0 + 0 ENSG00000100211.10 protein_coding CBY1 2 OTTHUMG00000150990.20 +42572 chr22 HAVANA gene 38667585 38681820 3358.0 - 0 ENSG00000228274.3 antisense AL021707.2 1 OTTHUMG00000150989.7 overlapping_locus +42573 chr22 HAVANA gene 38681948 38685421 2191.0 + 0 ENSG00000100216.5 protein_coding TOMM22 2 OTTHUMG00000150991.2 +42574 chr22 HAVANA gene 38685543 38701556 4326.0 - 0 ENSG00000100221.10 protein_coding JOSD1 1 OTTHUMG00000151030.18 +42575 chr22 HAVANA gene 38722743 38723505 763.0 - 0 ENSG00000229598.1 processed_pseudogene PRDX3P1 1 OTTHUMG00000151027.1 pseudo_consens +42576 chr22 HAVANA gene 38736610 38736792 183.0 - 0 ENSG00000273096.1 sense_intronic AL021707.8 2 OTTHUMG00000186187.1 overlapping_locus +42577 chr22 HAVANA gene 38705723 38738299 8166.0 + 0 ENSG00000100226.15 protein_coding GTPBP1 1 OTTHUMG00000151002.4 overlapping_locus +42578 chr22 HAVANA gene 38734725 38738765 461.0 + 0 ENSG00000244491.1 antisense AL021707.5 1 OTTHUMG00000151086.1 overlapping_locus +42579 chr22 HAVANA gene 38734730 38738990 527.0 + 0 ENSG00000230149.2 antisense AL021707.3 1 OTTHUMG00000151089.1 overlapping_locus +42580 chr22 HAVANA gene 38742625 38743115 491.0 + 0 ENSG00000272669.1 antisense AL021707.6 2 OTTHUMG00000186188.1 overlapping_locus +42581 chr22 HAVANA gene 38743495 38743910 416.0 + 0 ENSG00000273076.1 antisense AL021707.7 2 OTTHUMG00000186189.1 overlapping_locus +42582 chr22 HAVANA gene 38739003 38749041 500.0 + 0 ENSG00000225450.1 antisense AL021707.1 1 OTTHUMG00000151003.1 overlapping_locus +42583 chr22 HAVANA gene 38734725 38794143 6489.0 - 0 ENSG00000100242.15 protein_coding SUN2 1 OTTHUMG00000151031.10 overlapping_locus +42584 chr22 HAVANA gene 38778508 38794198 2430.0 - 0 ENSG00000100246.12 protein_coding DNAL4 2 OTTHUMG00000151025.2 overlapping_locus +42585 chr22 HAVANA gene 38818452 38843982 5784.0 - 0 ENSG00000221890.3 protein_coding NPTXR 2 OTTHUMG00000150458.2 +42586 chr22 HAVANA gene 38861450 38872314 8030.0 - 0 ENSG00000183741.11 protein_coding CBX6 2 OTTHUMG00000150456.2 +42587 chr22 HAVANA gene 38921227 38924708 678.0 + 0 ENSG00000235209.1 lincRNA AL022318.1 1 OTTHUMG00000151001.1 +42588 chr22 HAVANA gene 38952741 38992778 2358.0 + 0 ENSG00000128383.12 protein_coding APOBEC3A 2 OTTHUMG00000151004.2 +42589 chr22 HAVANA gene 38982347 38992804 1896.0 + 0 ENSG00000179750.15 protein_coding APOBEC3B 1 OTTHUMG00000151085.1 +42590 chr22 HAVANA gene 38991559 38998209 691.0 - 0 ENSG00000249310.2 antisense APOBEC3B-AS1 2 OTTHUMG00000151083.3 +42591 chr22 HAVANA gene 39014083 39020352 2818.0 + 0 ENSG00000244509.3 protein_coding APOBEC3C 2 OTTHUMG00000151087.3 overlapping_locus +42592 chr22 HAVANA gene 39021113 39033276 2528.0 + 0 ENSG00000243811.9 protein_coding APOBEC3D 2 OTTHUMG00000192151.1 overlapping_locus +42593 chr22 HAVANA gene 39014363 39033276 2156.0 + 0 ENSG00000284554.2 protein_coding AL022318.4 2 OTTHUMG00000151084.3 overlapping_locus +42594 chr22 HAVANA gene 39040604 39053910 3242.0 + 0 ENSG00000128394.16 protein_coding APOBEC3F 1 OTTHUMG00000151080.3 +42595 chr22 HAVANA gene 39070414 39070671 258.0 + 0 ENSG00000259421.1 unprocessed_pseudogene AL022318.2 2 OTTHUMG00000172255.2 +42596 chr22 HAVANA gene 39077005 39087743 5437.0 + 0 ENSG00000239713.8 protein_coding APOBEC3G 2 OTTHUMG00000151081.4 +42597 chr22 HAVANA gene 39091586 39092855 640.0 + 0 ENSG00000225720.6 transcribed_unprocessed_pseudogene AL031846.1 1 OTTHUMG00000151191.2 +42598 chr22 HAVANA gene 39097224 39104067 1251.0 + 0 ENSG00000100298.15 protein_coding APOBEC3H 1 OTTHUMG00000151082.7 +42599 chr22 HAVANA gene 39120293 39120566 274.0 - 0 ENSG00000226024.1 processed_pseudogene COX5BP7 1 OTTHUMG00000151028.1 pseudo_consens,overlapping_locus +42600 chr22 HAVANA gene 39133090 39136760 3671.0 + 0 ENSG00000279833.1 antisense AL031846.2 2 OTTHUMG00000189207.1 +42601 chr22 HAVANA gene 39120167 39152674 7461.0 - 0 ENSG00000100307.12 protein_coding CBX7 2 OTTHUMG00000150418.3 overlapping_locus +42602 chr22 HAVANA gene 39155525 39155945 421.0 + 0 ENSG00000227009.1 processed_pseudogene FUNDC2P4 1 OTTHUMG00000151185.1 pseudo_consens +42603 chr22 HAVANA gene 39223359 39244751 3761.0 - 0 ENSG00000100311.16 protein_coding PDGFB 1 OTTHUMG00000151029.15 +42604 chr22 HAVANA gene 39242188 39279897 4521.0 + 0 ENSG00000284633.1 antisense AL031590.1 2 OTTHUMG00000192214.1 +42605 chr22 HAVANA gene 39292988 39295589 1804.0 + 0 ENSG00000224794.2 lincRNA AL022326.1 2 OTTHUMG00000153516.2 +42606 chr22 ENSEMBL gene 39313819 39313911 93.0 - 0 ENSG00000209480.1 snoRNA SNORD83B 3 +42607 chr22 ENSEMBL gene 39315213 39315307 95.0 - 0 ENSG00000209482.1 snoRNA SNORD83A 3 +42608 chr22 ENSEMBL gene 39319050 39319113 64.0 - 0 ENSG00000263764.1 snoRNA SNORD43 3 +42609 chr22 HAVANA gene 39312882 39320389 4787.0 - 0 ENSG00000100316.15 protein_coding RPL3 1 OTTHUMG00000151079.9 ncRNA_host +42610 chr22 HAVANA gene 39379610 39380015 406.0 + 0 ENSG00000280216.1 TEC AL022326.2 2 OTTHUMG00000184136.1 overlapping_locus +42611 chr22 HAVANA gene 39349925 39385588 6953.0 + 0 ENSG00000100321.14 protein_coding SYNGR1 1 OTTHUMG00000030978.5 overlapping_locus +42612 chr22 HAVANA gene 39399741 39437060 4456.0 + 0 ENSG00000100324.13 protein_coding TAB1 1 OTTHUMG00000151102.3 +42613 chr22 HAVANA gene 39475807 39476822 498.0 - 0 ENSG00000227188.1 antisense MGAT3-AS1 1 OTTHUMG00000151100.1 +42614 chr22 HAVANA gene 39457344 39492194 5457.0 + 0 ENSG00000128268.11 protein_coding MGAT3 1 OTTHUMG00000030185.5 +42615 chr22 HAVANA gene 39504231 39504443 213.0 + 0 ENSG00000285025.1 protein_coding AL022312.1 2 OTTHUMG00000192565.1 overlapping_locus +42616 chr22 HAVANA gene 39499432 39518132 7555.0 + 0 ENSG00000100335.14 protein_coding MIEF1 1 OTTHUMG00000151105.3 overlapping_locus +42617 chr22 HAVANA gene 39519695 39522685 2514.0 + 0 ENSG00000128272.14 protein_coding ATF4 2 OTTHUMG00000151099.2 +42618 chr22 HAVANA gene 39529093 39532855 3763.0 - 0 ENSG00000187051.8 protein_coding RPS19BP1 2 OTTHUMG00000151101.1 +42619 chr22 HAVANA gene 39570753 39689737 10792.0 + 0 ENSG00000100346.17 protein_coding CACNA1I 2 OTTHUMG00000151096.1 +42620 chr22 HAVANA gene 39750127 39751293 1167.0 + 0 ENSG00000235647.1 processed_pseudogene AL022319.1 1 OTTHUMG00000155619.1 pseudo_consens +42621 chr22 ENSEMBL gene 39874255 39874515 261.0 - 0 ENSG00000238875.1 misc_RNA RN7SKP210 3 +42622 chr22 HAVANA gene 39875289 39876108 820.0 + 0 ENSG00000226085.3 processed_pseudogene UQCRFS1P1 2 OTTHUMG00000151103.1 +42623 chr22 HAVANA gene 39743044 39893864 3068.0 - 0 ENSG00000176177.9 protein_coding ENTHD1 2 OTTHUMG00000151098.1 ncRNA_host +42624 chr22 HAVANA gene 39960397 39964718 1322.0 + 0 ENSG00000225528.3 protein_coding Z82206.1 1 OTTHUMG00000151104.3 overlapping_locus,retrogene +42625 chr22 HAVANA gene 39901082 39973721 6190.0 + 0 ENSG00000100351.16 protein_coding GRAP2 2 OTTHUMG00000151097.2 overlapping_locus +42626 chr22 HAVANA gene 39994949 40043529 16389.0 + 0 ENSG00000133477.16 protein_coding FAM83F 2 OTTHUMG00000150688.4 +42627 chr22 HAVANA gene 40043068 40044530 1463.0 - 0 ENSG00000261202.1 antisense Z83847.1 2 OTTHUMG00000172747.1 +42628 chr22 HAVANA gene 40106325 40107066 742.0 - 0 ENSG00000228599.1 processed_pseudogene RPL7P52 1 OTTHUMG00000151113.1 pseudo_consens +42629 chr22 HAVANA gene 40044817 40335808 19998.0 + 0 ENSG00000100354.20 protein_coding TNRC6B 2 OTTHUMG00000151114.8 +42630 chr22 HAVANA gene 40372664 40388290 893.0 - 0 ENSG00000229999.6 antisense AL022238.2 2 OTTHUMG00000151143.6 +42631 chr22 HAVANA gene 40346500 40390463 7111.0 + 0 ENSG00000239900.12 protein_coding ADSL 2 OTTHUMG00000166425.12 overlapping_locus +42632 chr22 HAVANA gene 40346529 40410054 4563.0 + 0 ENSG00000284431.1 protein_coding AL022238.4 2 OTTHUMG00000189298.3 overlapping_locus +42633 chr22 HAVANA gene 40370591 40410289 4770.0 + 0 ENSG00000100359.20 protein_coding SGSM3 2 OTTHUMG00000151141.14 overlapping_locus +42634 chr22 HAVANA gene 40415003 40415445 443.0 + 0 ENSG00000272834.1 antisense AL022238.3 2 OTTHUMG00000186106.1 +42635 chr22 HAVANA gene 40433136 40433641 355.0 + 0 ENSG00000227413.1 processed_pseudogene AL022238.1 1 OTTHUMG00000155621.1 pseudo_consens +42636 chr22 HAVANA gene 40521800 40526707 1932.0 + 0 ENSG00000232564.3 antisense MRTFA-AS1 2 OTTHUMG00000151147.4 +42637 chr22 HAVANA gene 40569286 40569895 260.0 + 0 ENSG00000172912.4 processed_pseudogene COX6B1P3 1 OTTHUMG00000151144.1 pseudo_consens +42638 chr22 HAVANA gene 40586700 40588003 1304.0 - 0 ENSG00000230071.2 processed_pseudogene RPL4P6 1 OTTHUMG00000151142.2 pseudo_consens,overlapping_locus +42639 chr22 HAVANA gene 40410281 40636702 6602.0 - 0 ENSG00000196588.15 protein_coding MRTFA 1 OTTHUMG00000151146.8 overlapping_locus +42640 chr22 HAVANA gene 40673484 40674451 968.0 - 0 ENSG00000231907.2 processed_pseudogene GAPDHP37 1 OTTHUMG00000151145.2 pseudo_consens +42641 chr22 HAVANA gene 40678750 40682814 2961.0 + 0 ENSG00000128285.4 protein_coding MCHR1 1 OTTHUMG00000150256.1 +42642 chr22 HAVANA gene 40788777 40789267 491.0 - 0 ENSG00000230769.1 processed_pseudogene Z98048.1 1 OTTHUMG00000151140.1 pseudo_consens,overlapping_locus +42643 chr22 HAVANA gene 40798039 40798285 247.0 + 0 ENSG00000233603.1 processed_pseudogene JTBP1 1 OTTHUMG00000155620.1 pseudo_consens +42644 chr22 ENSEMBL gene 40813883 40813958 76.0 - 0 ENSG00000266594.1 miRNA MIR4766 3 +42645 chr22 HAVANA gene 40769630 40819399 3989.0 - 0 ENSG00000100372.14 protein_coding SLC25A17 2 OTTHUMG00000151139.3 ncRNA_host,overlapping_locus +42646 chr22 HAVANA gene 40824535 40857022 4147.0 - 0 ENSG00000100380.13 protein_coding ST13 2 OTTHUMG00000151201.2 +42647 chr22 HAVANA gene 40859549 40862126 2578.0 - 0 ENSG00000172404.4 protein_coding DNAJB7 2 OTTHUMG00000151202.1 retrogene +42648 chr22 ENSEMBL gene 40917111 40917381 271.0 + 0 ENSG00000273979.1 misc_RNA RF00017 3 +42649 chr22 ENSEMBL gene 40917743 40917846 104.0 + 0 ENSG00000200683.1 snRNA RNU6-379P 3 +42650 chr22 HAVANA gene 40857077 40932815 9574.0 + 0 ENSG00000196236.12 protein_coding XPNPEP3 2 OTTHUMG00000151312.5 ncRNA_host +42651 chr22 HAVANA gene 40951347 40973309 3092.0 + 0 ENSG00000100387.8 protein_coding RBX1 2 OTTHUMG00000151298.3 +42652 chr22 ENSEMBL gene 41045497 41045591 95.0 + 0 ENSG00000222698.1 misc_RNA RF00019 3 +42653 chr22 HAVANA gene 41064052 41064633 582.0 + 0 ENSG00000237214.3 processed_pseudogene AL080243.2 2 OTTHUMG00000150944.1 +42654 chr22 ENSEMBL gene 41065554 41065646 93.0 - 0 ENSG00000199515.1 misc_RNA RF00019 3 +42655 chr22 HAVANA gene 41074180 41075239 1060.0 - 0 ENSG00000213857.3 processed_pseudogene AL080243.1 1 OTTHUMG00000150938.1 pseudo_consens +42656 chr22 ENSEMBL gene 41092513 41092566 54.0 + 0 ENSG00000284015.1 miRNA MIR1281 3 +42657 chr22 ENSEMBL gene 41168217 41168316 100.0 + 0 ENSG00000252859.1 snRNA RNU6-375P 3 +42658 chr22 HAVANA gene 41091786 41180079 12500.0 + 0 ENSG00000100393.12 protein_coding EP300 2 OTTHUMG00000150937.4 ncRNA_host +42659 chr22 HAVANA gene 41169190 41183144 357.0 - 0 ENSG00000232754.1 antisense AL035658.1 2 OTTHUMG00000150939.1 overlapping_locus +42660 chr22 HAVANA gene 41189727 41190188 462.0 - 0 ENSG00000215771.2 processed_pseudogene LRRC37A14P 2 OTTHUMG00000150935.2 overlapping_locus +42661 chr22 HAVANA gene 41174591 41197456 457.0 - 0 ENSG00000231993.1 antisense EP300-AS1 2 OTTHUMG00000150941.1 overlapping_locus +42662 chr22 HAVANA gene 41209122 41217627 2500.0 - 0 ENSG00000235513.1 antisense AL035681.1 1 OTTHUMG00000150943.1 +42663 chr22 HAVANA gene 41205205 41231271 6451.0 + 0 ENSG00000100395.14 protein_coding L3MBTL2 2 OTTHUMG00000150942.2 +42664 chr22 HAVANA gene 41229510 41240934 2599.0 - 0 ENSG00000100399.15 protein_coding CHADL 2 OTTHUMG00000150936.3 +42665 chr22 ENSEMBL gene 41252992 41253050 59.0 - 0 ENSG00000274552.1 miRNA MIR6889 3 +42666 chr22 HAVANA gene 41245611 41286251 5348.0 - 0 ENSG00000100401.19 protein_coding RANGAP1 2 OTTHUMG00000150940.12 ncRNA_host +42667 chr22 HAVANA gene 41301522 41360147 10525.0 + 0 ENSG00000100403.11 protein_coding ZC3H7B 2 OTTHUMG00000150969.2 +42668 chr22 ENSEMBL gene 41377177 41377283 107.0 - 0 ENSG00000199865.1 snRNA RNU6-495P 3 +42669 chr22 HAVANA gene 41367333 41399326 4715.0 + 0 ENSG00000167074.14 protein_coding TEF 1 OTTHUMG00000150968.2 +42670 chr22 HAVANA gene 41430934 41431375 442.0 + 0 ENSG00000273424.1 lincRNA AL008582.1 2 OTTHUMG00000186116.1 +42671 chr22 HAVANA gene 41433492 41447023 4565.0 - 0 ENSG00000183864.4 protein_coding TOB2 2 OTTHUMG00000150970.3 +42672 chr22 HAVANA gene 41459717 41468725 1235.0 - 0 ENSG00000100410.7 protein_coding PHF5A 2 OTTHUMG00000150966.1 +42673 chr22 HAVANA gene 41469125 41528989 4041.0 + 0 ENSG00000100412.15 protein_coding ACO2 1 OTTHUMG00000030544.3 +42674 chr22 HAVANA gene 41525804 41544606 6594.0 - 0 ENSG00000100413.16 protein_coding POLR3H 2 OTTHUMG00000150971.1 +42675 chr22 HAVANA gene 41560763 41577741 3250.0 + 0 ENSG00000172346.14 protein_coding CSDC2 1 OTTHUMG00000150967.4 +42676 chr22 HAVANA gene 41576894 41589890 5082.0 - 0 ENSG00000100417.11 protein_coding PMM1 2 OTTHUMG00000150972.3 +42677 chr22 HAVANA gene 41598028 41621096 4972.0 - 0 ENSG00000100418.7 protein_coding DESI1 1 OTTHUMG00000044632.4 +42678 chr22 ENSEMBL gene 41648089 41648190 102.0 - 0 ENSG00000200332.1 misc_RNA RF00019 3 +42679 chr22 HAVANA gene 41621119 41664048 3288.0 + 0 ENSG00000196419.12 protein_coding XRCC6 2 OTTHUMG00000151190.3 +42680 chr22 HAVANA gene 41676745 41677125 381.0 - 0 ENSG00000285531.1 processed_pseudogene Z83840.1 2 OTTHUMG00000192632.1 +42681 chr22 ENSEMBL gene 41679711 41679817 107.0 + 0 ENSG00000207457.1 snRNA RNU6-476P 3 +42682 chr22 HAVANA gene 41673930 41690504 2780.0 - 0 ENSG00000100138.14 protein_coding SNU13 2 OTTHUMG00000151189.8 +42683 chr22 HAVANA gene 41688939 41698136 5341.0 + 0 ENSG00000184208.10 protein_coding C22orf46 1 OTTHUMG00000151188.4 +42684 chr22 HAVANA gene 41709225 41709489 265.0 - 0 ENSG00000231261.1 processed_pseudogene HMGN2P10 2 OTTHUMG00000151187.1 +42685 chr22 ENSEMBL gene 41722043 41722131 89.0 - 0 ENSG00000252603.1 snRNA RNU6ATAC22P 3 +42686 chr22 ENSEMBL gene 41747312 41747413 102.0 + 0 ENSG00000206813.1 misc_RNA RF00019 3 +42687 chr22 HAVANA gene 41699499 41799456 5393.0 + 0 ENSG00000167077.12 protein_coding MEI1 1 OTTHUMG00000030083.5 ncRNA_host +42688 chr22 HAVANA gene 41800679 41826299 1270.0 + 0 ENSG00000100147.13 protein_coding CCDC134 1 OTTHUMG00000151262.1 +42689 chr22 HAVANA gene 41831215 41834665 2989.0 - 0 ENSG00000184068.2 antisense SREBF2-AS1 1 OTTHUMG00000151272.1 +42690 chr22 ENSEMBL gene 41900944 41901012 69.0 + 0 ENSG00000207932.1 miRNA MIR33A 3 +42691 chr22 HAVANA gene 41833079 41907308 7557.0 + 0 ENSG00000198911.11 protein_coding SREBF2 1 OTTHUMG00000151261.2 ncRNA_host +42692 chr22 HAVANA gene 41909554 41914667 1405.0 - 0 ENSG00000234965.2 protein_coding SHISA8 2 OTTHUMG00000151273.5 +42693 chr22 ENSEMBL gene 41923222 41923297 76.0 - 0 ENSG00000283829.1 miRNA MIR378I 3 +42694 chr22 HAVANA gene 41922023 41926818 3944.0 - 0 ENSG00000159958.6 protein_coding TNFRSF13C 2 OTTHUMG00000151271.2 ncRNA_host +42695 chr22 HAVANA gene 41938721 41947164 1778.0 - 0 ENSG00000100162.14 protein_coding CENPM 1 OTTHUMG00000151277.2 +42696 chr22 HAVANA gene 41952165 41958933 1521.0 + 0 ENSG00000205704.6 transcribed_unitary_pseudogene LINC00634 1 OTTHUMG00000151274.2 +42697 chr22 HAVANA gene 41981304 41982217 515.0 - 0 ENSG00000224883.1 antisense Z99716.1 1 OTTHUMG00000151275.1 +42698 chr22 HAVANA gene 41969475 41998221 7153.0 + 0 ENSG00000100167.20 protein_coding SEPT3 1 OTTHUMG00000030494.5 +42699 chr22 HAVANA gene 42001069 42001966 898.0 - 0 ENSG00000215347.3 processed_pseudogene SLC25A5P1 1 OTTHUMG00000151288.2 pseudo_consens +42700 chr22 HAVANA gene 41998725 42058456 6180.0 + 0 ENSG00000183066.14 protein_coding WBP2NL 2 OTTHUMG00000151270.1 +42701 chr22 HAVANA gene 42058354 42070842 3706.0 - 0 ENSG00000198951.11 protein_coding NAGA 2 OTTHUMG00000151276.3 +42702 chr22 ENSEMBL gene 42076058 42076161 104.0 - 0 ENSG00000238498.1 snoRNA SNORD13P1 3 +42703 chr22 HAVANA gene 42074251 42079441 2451.0 + 0 ENSG00000177096.8 protein_coding PHETA2 2 OTTHUMG00000151285.3 +42704 chr22 HAVANA gene 42079691 42084284 1731.0 + 0 ENSG00000183172.8 protein_coding SMDT1 2 OTTHUMG00000151286.3 +42705 chr22 HAVANA gene 42089630 42090028 399.0 - 0 ENSG00000270083.1 sense_intronic AL021878.2 2 OTTHUMG00000184054.1 overlapping_locus +42706 chr22 HAVANA gene 42085525 42090955 1416.0 - 0 ENSG00000184983.10 protein_coding NDUFA6 2 OTTHUMG00000151287.5 overlapping_locus +42707 chr22 HAVANA gene 42107765 42108953 1189.0 - 0 ENSG00000213790.2 processed_pseudogene OLA1P1 1 OTTHUMG00000151284.1 pseudo_consens +42708 chr22 HAVANA gene 42126499 42130906 2443.0 - 0 ENSG00000100197.21 protein_coding CYP2D6 2 OTTHUMG00000150918.5 +42709 chr22 HAVANA gene 42132543 42132998 456.0 + 0 ENSG00000227370.1 processed_pseudogene AC254562.1 1 OTTHUMG00000155612.2 pseudo_consens,overlapping_locus +42710 chr22 HAVANA gene 42090931 42137742 5206.0 + 0 ENSG00000237037.9 processed_transcript NDUFA6-DT 1 OTTHUMG00000150917.9 overlapping_locus +42711 chr22 HAVANA gene 42138060 42139726 631.0 + 0 ENSG00000281538.1 lincRNA AC254562.3 2 OTTHUMG00000150921.10 +42712 chr22 HAVANA gene 42136433 42139927 667.0 - 0 ENSG00000232710.1 lincRNA AC254562.2 1 OTTHUMG00000189689.8 +42713 chr22 HAVANA gene 42140203 42144577 2260.0 - 0 ENSG00000205702.10 polymorphic_pseudogene CYP2D7 2 OTTHUMG00000030222.8 +42714 chr22 HAVANA gene 42149886 42155001 1490.0 - 0 ENSG00000226450.2 unprocessed_pseudogene CYP2D8P 2 OTTHUMG00000150922.2 +42715 chr22 HAVANA gene 42269753 42275196 1451.0 + 0 ENSG00000182057.4 lincRNA OGFRP1 2 OTTHUMG00000150700.1 +42716 chr22 HAVANA gene 42276355 42277052 545.0 + 0 ENSG00000233903.2 lincRNA Z83851.1 2 OTTHUMG00000150697.2 +42717 chr22 HAVANA gene 42278188 42278846 659.0 + 0 ENSG00000273366.1 lincRNA Z83851.2 2 OTTHUMG00000186179.1 +42718 chr22 HAVANA gene 42160013 42343616 7548.0 - 0 ENSG00000100207.18 protein_coding TCF20 2 OTTHUMG00000150920.4 +42719 chr22 HAVANA gene 42364400 42369236 1267.0 - 0 ENSG00000229891.1 lincRNA LINC01315 1 OTTHUMG00000150696.1 +42720 chr22 HAVANA gene 42380410 42432395 5817.0 - 0 ENSG00000235568.6 protein_coding NFAM1 2 OTTHUMG00000150923.1 +42721 chr22 HAVANA gene 42438023 42446195 572.0 + 0 ENSG00000230107.1 lincRNA AL022316.1 1 OTTHUMG00000150919.1 +42722 chr22 HAVANA gene 42500579 42512560 1742.0 + 0 ENSG00000172250.15 transcribed_unitary_pseudogene SERHL 2 OTTHUMG00000150888.5 +42723 chr22 HAVANA gene 42509968 42519802 4082.0 - 0 ENSG00000189306.10 protein_coding RRP7A 2 OTTHUMG00000150891.1 +42724 chr22 ENSEMBL gene 42565048 42565330 283.0 - 0 ENSG00000202058.1 misc_RNA RN7SKP80 3 +42725 chr22 ENSEMBL gene 42569147 42569250 104.0 - 0 ENSG00000251913.1 snRNA RNU6-513P 3 +42726 chr22 HAVANA gene 42553617 42574382 2821.0 + 0 ENSG00000183569.17 protein_coding SERHL2 2 OTTHUMG00000150892.3 +42727 chr22 HAVANA gene 42555223 42582038 5092.0 - 0 ENSG00000182841.12 transcribed_unprocessed_pseudogene RRP7BP 1 OTTHUMG00000150889.3 +42728 chr22 HAVANA gene 42583721 42614962 3650.0 - 0 ENSG00000100227.17 protein_coding POLDIP3 2 OTTHUMG00000150887.3 +42729 chr22 ENSEMBL gene 42615244 42615393 150.0 + 0 ENSG00000276027.1 snRNA RNU12 3 +42730 chr22 HAVANA gene 42615244 42615907 664.0 + 0 ENSG00000270022.3 lincRNA Z93241.1 2 OTTHUMG00000183993.1 ncRNA_host +42731 chr22 HAVANA gene 42639803 42640601 799.0 - 0 ENSG00000249222.1 protein_coding ATP5MGL 2 OTTHUMG00000150890.2 overlapping_locus,retrogene +42732 chr22 HAVANA gene 42617840 42649568 5973.0 - 0 ENSG00000100243.20 protein_coding CYB5R3 2 OTTHUMG00000150745.6 overlapping_locus +42733 chr22 HAVANA gene 42692112 42721298 3407.0 - 0 ENSG00000128274.16 protein_coding A4GALT 2 OTTHUMG00000150744.6 +42734 chr22 ENSEMBL gene 42762860 42762959 100.0 - 0 ENSG00000200448.1 misc_RNA RF00019 3 +42735 chr22 HAVANA gene 42776406 42777296 891.0 - 0 ENSG00000234009.1 processed_pseudogene RPL5P34 1 OTTHUMG00000150746.1 pseudo_consens +42736 chr22 HAVANA gene 42784462 42787100 777.0 + 0 ENSG00000229608.1 unprocessed_pseudogene GOLGA2P4 1 OTTHUMG00000150747.1 pseudo_consens +42737 chr22 HAVANA gene 42791814 42794313 1596.0 - 0 ENSG00000274717.1 processed_pseudogene AL049757.1 2 OTTHUMG00000188039.1 +42738 chr22 HAVANA gene 42853403 42853799 397.0 - 0 ENSG00000226989.1 processed_pseudogene AL049758.1 1 OTTHUMG00000150717.1 pseudo_consens,overlapping_locus +42739 chr22 HAVANA gene 42796502 42858106 3381.0 - 0 ENSG00000242247.10 protein_coding ARFGAP3 2 OTTHUMG00000150718.12 overlapping_locus +42740 chr22 HAVANA gene 42835412 43015145 4554.0 - 0 ENSG00000100266.18 protein_coding PACSIN2 2 OTTHUMG00000150701.7 overlapping_locus +42741 chr22 HAVANA gene 43038585 43052366 2083.0 + 0 ENSG00000230319.1 antisense AL022476.1 2 OTTHUMG00000150695.1 +42742 chr22 HAVANA gene 43039644 43089428 1749.0 - 0 ENSG00000100271.16 protein_coding TTLL1 2 OTTHUMG00000150699.3 +42743 chr22 HAVANA gene 43092167 43092524 358.0 + 0 ENSG00000234735.1 processed_pseudogene AL022237.1 1 OTTHUMG00000150698.1 pseudo_consens +42744 chr22 HAVANA gene 43110748 43129712 953.0 + 0 ENSG00000100290.2 protein_coding BIK 2 OTTHUMG00000150703.1 +42745 chr22 HAVANA gene 43132206 43143394 2388.0 - 0 ENSG00000100294.12 protein_coding MCAT 2 OTTHUMG00000150704.2 +42746 chr22 HAVANA gene 43151514 43163242 1455.0 + 0 ENSG00000100300.17 protein_coding TSPO 2 OTTHUMG00000150573.8 +42747 chr22 HAVANA gene 43166622 43187133 4622.0 - 0 ENSG00000100304.12 protein_coding TTLL12 2 OTTHUMG00000150682.3 +42748 chr22 HAVANA gene 43212674 43213661 531.0 + 0 ENSG00000236272.1 antisense Z82214.2 2 OTTHUMG00000150678.1 +42749 chr22 HAVANA gene 43232141 43239010 988.0 + 0 ENSG00000234892.1 antisense Z82214.1 1 OTTHUMG00000150676.1 +42750 chr22 HAVANA gene 43275955 43283830 1951.0 + 0 ENSG00000203527.2 antisense Z99756.1 2 OTTHUMG00000150677.1 +42751 chr22 HAVANA gene 43197283 43343388 12135.0 - 0 ENSG00000159307.18 protein_coding SCUBE1 2 OTTHUMG00000150679.5 +42752 chr22 HAVANA gene 43400331 43409681 951.0 + 0 ENSG00000236117.1 lincRNA LINC01639 1 OTTHUMG00000150565.1 +42753 chr22 HAVANA gene 43411196 43507848 5821.0 + 0 ENSG00000186732.13 protein_coding MPPED1 2 OTTHUMG00000150566.7 +42754 chr22 HAVANA gene 43516107 43537117 2656.0 + 0 ENSG00000223843.4 antisense EFCAB6-AS1 2 OTTHUMG00000150523.5 +42755 chr22 HAVANA gene 43759199 43759910 712.0 - 0 ENSG00000233157.1 processed_pseudogene Z97055.1 1 OTTHUMG00000155610.1 pseudo_consens,overlapping_locus +42756 chr22 HAVANA gene 43802544 43802772 229.0 + 0 ENSG00000180150.5 processed_pseudogene HMGN2P9 2 OTTHUMG00000030777.3 +42757 chr22 HAVANA gene 43528744 43812337 8557.0 - 0 ENSG00000186976.14 protein_coding EFCAB6 2 OTTHUMG00000150522.3 overlapping_locus +42758 chr22 HAVANA gene 43812456 43817394 1981.0 + 0 ENSG00000261251.1 antisense Z97055.2 2 OTTHUMG00000172728.1 +42759 chr22 HAVANA gene 43824509 43862503 2849.0 - 0 ENSG00000130540.13 protein_coding SULT4A1 2 OTTHUMG00000141314.2 +42760 chr22 HAVANA gene 43879678 43892013 2544.0 - 0 ENSG00000100341.11 protein_coding PNPLA5 2 OTTHUMG00000030779.9 +42761 chr22 HAVANA gene 43957027 43957348 322.0 + 0 ENSG00000224856.2 processed_pseudogene AL035398.1 1 OTTHUMG00000150556.2 pseudo_consens,overlapping_locus +42762 chr22 HAVANA gene 43923739 43964488 3232.0 + 0 ENSG00000100344.10 protein_coding PNPLA3 2 OTTHUMG00000150555.2 overlapping_locus +42763 chr22 HAVANA gene 43955421 44010531 6435.0 + 0 ENSG00000100347.14 protein_coding SAMM50 2 OTTHUMG00000150557.4 overlapping_locus +42764 chr22 HAVANA gene 44102779 44116232 13454.0 + 0 ENSG00000279175.1 sense_intronic AL033543.1 2 OTTHUMG00000189192.1 +42765 chr22 HAVANA gene 44139365 44153626 14262.0 + 0 ENSG00000280434.1 sense_overlapping AL031595.3 2 OTTHUMG00000189193.1 overlapping_locus +42766 chr22 HAVANA gene 43999211 44172949 7403.0 + 0 ENSG00000188677.14 protein_coding PARVB 1 OTTHUMG00000150665.5 overlapping_locus +42767 chr22 HAVANA gene 44183031 44187739 4709.0 - 0 ENSG00000279933.1 TEC AL031595.1 2 OTTHUMG00000186160.2 +42768 chr22 HAVANA gene 44172956 44219533 8656.0 + 0 ENSG00000138964.16 protein_coding PARVG 2 OTTHUMG00000150473.9 +42769 chr22 HAVANA gene 44210442 44229512 19071.0 - 0 ENSG00000280011.1 antisense AL031595.2 2 OTTHUMG00000189263.1 +42770 chr22 HAVANA gene 44243667 44312851 6751.0 - 0 ENSG00000138944.7 protein_coding SHISAL1 1 OTTHUMG00000030991.2 +42771 chr22 HAVANA gene 44365551 44366284 606.0 + 0 ENSG00000220702.1 lincRNA Z85994.1 2 OTTHUMG00000150464.1 +42772 chr22 HAVANA gene 44413485 44414814 452.0 - 0 ENSG00000236079.1 processed_pseudogene Z85994.2 2 OTTHUMG00000150466.1 +42773 chr22 HAVANA gene 44443327 44444788 630.0 + 0 ENSG00000232655.1 lincRNA LINC01656 1 OTTHUMG00000150468.1 +42774 chr22 HAVANA gene 44483495 44483717 223.0 - 0 ENSG00000228807.1 processed_pseudogene MRPS18CP6 1 OTTHUMG00000150467.1 pseudo_consens +42775 chr22 HAVANA gene 44486295 44486914 620.0 - 0 ENSG00000279642.1 TEC AL023973.1 2 OTTHUMG00000172745.1 +42776 chr22 HAVANA gene 44492572 44498298 5495.0 - 0 ENSG00000188636.3 protein_coding RTL6 2 OTTHUMG00000150465.1 +42777 chr22 HAVANA gene 44566965 44568247 1283.0 + 0 ENSG00000215333.3 processed_pseudogene KRT18P23 1 OTTHUMG00000150459.1 pseudo_consens +42778 chr22 HAVANA gene 44569339 44572341 914.0 + 0 ENSG00000187012.10 lincRNA LINC00207 1 OTTHUMG00000150462.2 +42779 chr22 HAVANA gene 44606939 44625419 500.0 - 0 ENSG00000234300.1 lincRNA LINC00229 1 OTTHUMG00000149974.1 +42780 chr22 HAVANA gene 44651835 44652379 545.0 + 0 ENSG00000231801.2 processed_pseudogene ANP32BP2 1 OTTHUMG00000150461.2 pseudo_consens +42781 chr22 HAVANA gene 44668547 44737681 5247.0 + 0 ENSG00000186654.20 protein_coding PRR5 1 OTTHUMG00000150460.5 overlapping_locus +42782 chr22 HAVANA gene 44702233 44862706 3264.0 + 0 ENSG00000248405.10 protein_coding PRR5-ARHGAP8 2 OTTHUMG00000160954.1 overlapping_locus +42783 chr22 HAVANA gene 44752558 44862788 4990.0 + 0 ENSG00000241484.9 protein_coding ARHGAP8 1 OTTHUMG00000030234.13 overlapping_locus +42784 chr22 HAVANA gene 44901547 44902471 925.0 + 0 ENSG00000223730.1 transcribed_processed_pseudogene Z83838.1 1 OTTHUMG00000151198.2 pseudo_consens +42785 chr22 HAVANA gene 45000565 45003619 1633.0 - 0 ENSG00000230922.1 sense_intronic AL079301.1 2 OTTHUMG00000153503.1 overlapping_locus +42786 chr22 HAVANA gene 44881162 45009999 5753.0 - 0 ENSG00000056487.15 protein_coding PHF21B 2 OTTHUMG00000151199.4 overlapping_locus +42787 chr22 HAVANA gene 45155539 45156011 473.0 - 0 ENSG00000273243.1 lincRNA Z82243.1 2 OTTHUMG00000186136.1 overlapping_locus +42788 chr22 HAVANA gene 45133020 45163781 2263.0 - 0 ENSG00000226328.6 lincRNA NUP50-DT 1 OTTHUMG00000151264.3 overlapping_locus +42789 chr22 HAVANA gene 45178990 45179310 321.0 + 0 ENSG00000273353.1 sense_intronic AL008718.3 2 OTTHUMG00000186137.1 overlapping_locus +42790 chr22 HAVANA gene 45163841 45188015 8318.0 + 0 ENSG00000093000.18 protein_coding NUP50 2 OTTHUMG00000151265.5 overlapping_locus +42791 chr22 ENSEMBL gene 45200954 45201019 66.0 - 0 ENSG00000221598.3 miRNA MIR1249 3 +42792 chr22 HAVANA gene 45190338 45240769 10019.0 - 0 ENSG00000100364.18 protein_coding KIAA0930 1 OTTHUMG00000151263.4 ncRNA_host +42793 chr22 HAVANA gene 45262273 45263585 1313.0 - 0 ENSG00000273287.2 lincRNA AL008718.2 2 OTTHUMG00000186139.3 +42794 chr22 HAVANA gene 45275599 45276085 487.0 + 0 ENSG00000213752.3 processed_pseudogene AL008718.1 1 OTTHUMG00000151335.2 pseudo_consens +42795 chr22 HAVANA gene 45284982 45295874 1051.0 + 0 ENSG00000100373.9 protein_coding UPK3A 1 OTTHUMG00000151339.1 +42796 chr22 HAVANA gene 45308968 45341955 6512.0 + 0 ENSG00000100376.11 protein_coding FAM118A 1 OTTHUMG00000151338.3 +42797 chr22 HAVANA gene 45344063 45413619 4253.0 - 0 ENSG00000077935.16 protein_coding SMC1B 2 OTTHUMG00000151334.3 +42798 chr22 HAVANA gene 45413691 45432496 1815.0 + 0 ENSG00000128408.8 protein_coding RIBC2 2 OTTHUMG00000151332.3 +42799 chr22 HAVANA gene 45435864 45448743 545.0 - 0 ENSG00000232363.1 antisense AL021391.1 2 OTTHUMG00000151333.1 +42800 chr22 HAVANA gene 45502238 45601135 7285.0 + 0 ENSG00000077942.18 protein_coding FBLN1 2 OTTHUMG00000151340.4 +42801 chr22 HAVANA gene 45604432 45605621 548.0 - 0 ENSG00000238120.1 antisense LINC01589 1 OTTHUMG00000151331.1 +42802 chr22 ENSEMBL gene 45624531 45624632 102.0 - 0 ENSG00000251985.1 snRNA RNU6-1161P 3 +42803 chr22 HAVANA gene 45657019 45680130 23112.0 + 0 ENSG00000280383.1 sense_overlapping Z95331.1 2 OTTHUMG00000189269.1 overlapping_locus +42804 chr22 ENSEMBL gene 45760524 45760598 75.0 + 0 ENSG00000264160.1 miRNA MIR4762 3 +42805 chr22 HAVANA gene 45792418 45793636 1219.0 - 0 ENSG00000235347.1 processed_pseudogene Z84478.1 1 OTTHUMG00000151337.2 pseudo_consens +42806 chr22 HAVANA gene 45671798 45845307 5127.0 + 0 ENSG00000130638.16 protein_coding ATXN10 1 OTTHUMG00000150451.2 ncRNA_host,overlapping_locus +42807 chr22 HAVANA gene 45875932 45879247 3316.0 + 0 ENSG00000279954.1 antisense BX324167.2 2 OTTHUMG00000189275.1 +42808 chr22 HAVANA gene 45875999 45891438 986.0 - 0 ENSG00000235091.2 lincRNA BX324167.1 2 OTTHUMG00000150449.2 +42809 chr22 HAVANA gene 45920362 45977129 5051.0 - 0 ENSG00000188064.9 protein_coding WNT7B 1 OTTHUMG00000154636.2 +42810 chr22 HAVANA gene 46006616 46010777 4162.0 + 0 ENSG00000280424.1 TEC BX537318.2 2 OTTHUMG00000186190.1 +42811 chr22 HAVANA gene 46013606 46015498 1207.0 + 0 ENSG00000273145.1 lincRNA BX537318.1 2 OTTHUMG00000170172.1 +42812 chr22 HAVANA gene 46039907 46044853 4947.0 - 0 ENSG00000231711.2 processed_transcript LINC00899 1 OTTHUMG00000150406.2 +42813 chr22 HAVANA gene 46053093 46053560 468.0 + 0 ENSG00000273289.1 antisense AL121672.3 2 OTTHUMG00000186115.1 +42814 chr22 HAVANA gene 46049478 46054144 2817.0 - 0 ENSG00000182257.7 protein_coding PRR34 2 OTTHUMG00000150407.1 +42815 chr22 HAVANA gene 46053705 46057210 1093.0 + 0 ENSG00000241990.5 antisense PRR34-AS1 2 OTTHUMG00000150198.2 overlapping_locus +42816 chr22 HAVANA gene 46055740 46058160 1181.0 - 0 ENSG00000231010.1 lincRNA AL121672.1 2 OTTHUMG00000150444.1 +42817 chr22 HAVANA gene 46067356 46069891 867.0 - 0 ENSG00000235159.1 lincRNA AL121672.2 1 OTTHUMG00000150445.1 +42818 chr22 ENSEMBL gene 46091044 46091126 83.0 + 0 ENSG00000266533.1 miRNA MIR3619 3 +42819 chr22 ENSEMBL gene 46112749 46112822 74.0 + 0 ENSG00000283990.1 miRNA MIRLET7A3 3 +42820 chr22 ENSEMBL gene 46113566 46113657 92.0 + 0 ENSG00000284175.1 miRNA MIR4763 3 +42821 chr22 ENSEMBL gene 46113686 46113768 83.0 + 0 ENSG00000284520.1 miRNA MIRLET7B 3 +42822 chr22 HAVANA gene 46053869 46113928 5728.0 + 0 ENSG00000197182.14 lincRNA MIRLET7BHG 2 OTTHUMG00000150446.2 ncRNA_host,overlapping_locus +42823 chr22 HAVANA gene 46163303 46165347 2045.0 + 0 ENSG00000280384.1 sense_intronic FP325332.1 2 OTTHUMG00000189191.1 +42824 chr22 HAVANA gene 46150521 46243756 13219.0 + 0 ENSG00000186951.16 protein_coding PPARA 2 OTTHUMG00000150443.7 +42825 chr22 HAVANA gene 46244011 46250679 2005.0 - 0 ENSG00000205643.10 protein_coding CDPF1 1 OTTHUMG00000030672.4 +42826 chr22 HAVANA gene 46255663 46263355 7693.0 - 0 ENSG00000130943.6 protein_coding PKDREJ 2 OTTHUMG00000150493.1 +42827 chr22 HAVANA gene 46267961 46294008 3578.0 + 0 ENSG00000075234.16 protein_coding TTC38 1 OTTHUMG00000150494.2 +42828 chr22 HAVANA gene 46295143 46296660 1518.0 - 0 ENSG00000277232.2 lincRNA GTSE1-DT 2 OTTHUMG00000189497.1 +42829 chr22 HAVANA gene 46296741 46330810 4242.0 + 0 ENSG00000075218.18 protein_coding GTSE1 2 OTTHUMG00000150486.3 +42830 chr22 HAVANA gene 46330875 46357340 8390.0 + 0 ENSG00000100416.13 protein_coding TRMU 2 OTTHUMG00000150424.4 +42831 chr22 HAVANA gene 46481329 46481760 432.0 - 0 ENSG00000230634.1 processed_pseudogene AL031597.1 1 OTTHUMG00000150422.1 pseudo_consens,overlapping_locus +42832 chr22 HAVANA gene 46360834 46537170 12806.0 - 0 ENSG00000075275.16 protein_coding CELSR1 1 OTTHUMG00000150423.1 overlapping_locus +42833 chr22 HAVANA gene 46541495 46548196 2949.0 + 0 ENSG00000234869.1 antisense AL021392.1 2 OTTHUMG00000150405.1 +42834 chr22 HAVANA gene 46576012 46679790 4885.0 + 0 ENSG00000075240.16 protein_coding GRAMD4 2 OTTHUMG00000150402.3 +42835 chr22 HAVANA gene 46684411 46738261 4938.0 - 0 ENSG00000100422.13 protein_coding CERK 2 OTTHUMG00000150395.2 +42836 chr22 HAVANA gene 46761894 46762563 670.0 - 0 ENSG00000260708.1 antisense AL118516.1 2 OTTHUMG00000172744.1 +42837 chr22 HAVANA gene 46914092 46916042 1951.0 - 0 ENSG00000280080.2 antisense TBC1D22A-AS1 2 OTTHUMG00000192097.1 +42838 chr22 HAVANA gene 47115838 47117217 1380.0 - 0 ENSG00000278881.2 TEC FP325331.1 2 OTTHUMG00000192098.1 +42839 chr22 HAVANA gene 46762617 47175699 5315.0 + 0 ENSG00000054611.13 protein_coding TBC1D22A 2 OTTHUMG00000150332.3 +42840 chr22 HAVANA gene 47259366 47261007 1642.0 + 0 ENSG00000280312.1 TEC Z83836.1 2 OTTHUMG00000172746.1 +42841 chr22 HAVANA gene 47345569 47373541 4364.0 + 0 ENSG00000224715.1 lincRNA Z82186.1 2 OTTHUMG00000150328.1 +42842 chr22 HAVANA gene 47461299 47487111 1090.0 - 0 ENSG00000218357.3 lincRNA LINC01644 1 OTTHUMG00000150324.3 +42843 chr22 HAVANA gene 47621043 47631569 4314.0 - 0 ENSG00000205634.6 lincRNA LINC00898 2 OTTHUMG00000150323.2 +42844 chr22 HAVANA gene 47662559 47663603 740.0 - 0 ENSG00000232897.2 processed_pseudogene AL117329.2 1 OTTHUMG00000150322.2 pseudo_consens +42845 chr22 HAVANA gene 47631674 47855600 2276.0 + 0 ENSG00000224271.5 lincRNA AL117329.1 2 OTTHUMG00000150321.1 +42846 chr22 HAVANA gene 47860671 47862062 219.0 + 0 ENSG00000230345.1 lincRNA AL121580.1 2 OTTHUMG00000150319.1 +42847 chr22 HAVANA gene 47916728 47926264 9537.0 + 0 ENSG00000279712.1 lincRNA FP325330.3 2 OTTHUMG00000189277.1 +42848 chr22 HAVANA gene 48044710 48048549 372.0 - 0 ENSG00000235154.1 lincRNA FP325330.1 2 OTTHUMG00000150320.1 +42849 chr22 HAVANA gene 48052646 48058275 5630.0 + 0 ENSG00000278890.1 lincRNA FP325330.2 2 OTTHUMG00000189268.1 +42850 chr22 HAVANA gene 48139461 48141001 498.0 - 0 ENSG00000238192.1 lincRNA BX284656.2 2 OTTHUMG00000150317.1 +42851 chr22 HAVANA gene 48141542 48143229 668.0 + 0 ENSG00000229275.1 lincRNA BX284656.1 2 OTTHUMG00000150318.1 +42852 chr22 HAVANA gene 48254903 48259116 2516.0 - 0 ENSG00000285707.1 lincRNA AL008720.1 2 OTTHUMG00000192709.1 +42853 chr22 ENSEMBL gene 48274364 48274415 52.0 + 0 ENSG00000266508.1 miRNA MIR3201 3 +42854 chr22 HAVANA gene 48403462 48415571 784.0 + 0 ENSG00000285855.1 lincRNA Z72006.1 2 OTTHUMG00000193259.1 +42855 chr22 HAVANA gene 48448890 48451217 568.0 + 0 ENSG00000233179.1 lincRNA Z82249.1 1 OTTHUMG00000150310.1 +42856 chr22 HAVANA gene 48538900 48547387 3629.0 - 0 ENSG00000281732.1 processed_transcript Z84468.1 2 OTTHUMG00000150309.1 +42857 chr22 ENSEMBL gene 48780295 48780353 59.0 + 0 ENSG00000266887.1 miRNA MIR4535 3 +42858 chr22 HAVANA gene 48489460 48850912 3173.0 + 0 ENSG00000219438.8 protein_coding FAM19A5 1 OTTHUMG00000150308.2 ncRNA_host +42859 chr22 HAVANA gene 48866770 48898386 4015.0 + 0 ENSG00000205632.3 lincRNA LINC01310 2 OTTHUMG00000150307.2 +42860 chr22 HAVANA gene 49166421 49188062 988.0 - 0 ENSG00000285623.1 lincRNA Z82202.2 2 OTTHUMG00000193111.1 +42861 chr22 HAVANA gene 49213911 49214247 337.0 - 0 ENSG00000226142.2 processed_pseudogene RPL35P8 1 OTTHUMG00000150301.2 pseudo_consens +42862 chr22 HAVANA gene 49264201 49266080 1880.0 + 0 ENSG00000280199.1 lincRNA Z82202.1 2 OTTHUMG00000189187.1 +42863 chr22 HAVANA gene 49372924 49377119 2340.0 + 0 ENSG00000285722.1 lincRNA AC207130.1 2 OTTHUMG00000192777.1 +42864 chr22 HAVANA gene 49500568 49501585 1018.0 + 0 ENSG00000280224.1 lincRNA AL008636.1 2 OTTHUMG00000189188.1 +42865 chr22 HAVANA gene 49534062 49534926 865.0 + 0 ENSG00000279597.1 lincRNA AL031593.1 2 OTTHUMG00000189189.1 +42866 chr22 ENSEMBL gene 49543393 49543466 74.0 - 0 ENSG00000264139.1 miRNA MIR3667 3 +42867 chr22 HAVANA gene 49548681 49556473 3894.0 + 0 ENSG00000212939.2 lincRNA Z97192.1 2 OTTHUMG00000150300.1 +42868 chr22 HAVANA gene 49572264 49575426 2379.0 - 0 ENSG00000213279.2 lincRNA Z97192.2 1 OTTHUMG00000150298.1 overlapping_locus +42869 chr22 HAVANA gene 49612657 49615716 2975.0 - 0 ENSG00000235111.1 sense_intronic Z97192.3 1 OTTHUMG00000150299.1 overlapping_locus +42870 chr22 HAVANA gene 49414524 49657542 6769.0 - 0 ENSG00000188511.12 lincRNA C22orf34 1 OTTHUMG00000030424.4 ncRNA_host,overlapping_locus +42871 chr22 HAVANA gene 49718053 49724506 3775.0 - 0 ENSG00000226954.1 lincRNA AL023802.1 2 OTTHUMG00000150297.1 +42872 chr22 ENSEMBL gene 49738677 49739003 327.0 + 0 ENSG00000223142.1 misc_RNA RN7SKP252 3 +42873 chr22 HAVANA gene 49757627 49758980 816.0 - 0 ENSG00000214727.2 unprocessed_pseudogene RPL5P35 1 OTTHUMG00000150295.1 pseudo_consens +42874 chr22 HAVANA gene 49805452 49807208 1757.0 + 0 ENSG00000279345.1 antisense Z98885.3 2 OTTHUMG00000189262.1 +42875 chr22 HAVANA gene 49817248 49817712 465.0 + 0 ENSG00000236867.1 processed_pseudogene Z98885.1 1 OTTHUMG00000150296.1 pseudo_consens +42876 chr22 HAVANA gene 49773283 49827512 5850.0 - 0 ENSG00000100425.18 protein_coding BRD1 2 OTTHUMG00000150288.3 +42877 chr22 HAVANA gene 49832616 49837786 1567.0 - 0 ENSG00000260613.1 lincRNA Z98885.2 2 OTTHUMG00000172739.1 +42878 chr22 HAVANA gene 49845929 49846090 162.0 + 0 ENSG00000229409.1 processed_pseudogene AL117328.1 1 OTTHUMG00000150287.1 pseudo_consens +42879 chr22 ENSEMBL gene 49846456 49846720 265.0 + 0 ENSG00000277771.1 misc_RNA RF00017 3 +42880 chr22 HAVANA gene 49851425 49853364 1940.0 + 0 ENSG00000279494.1 lincRNA AL117328.2 2 OTTHUMG00000189190.1 +42881 chr22 HAVANA gene 49853842 49890078 6893.0 + 0 ENSG00000100426.6 protein_coding ZBED4 2 OTTHUMG00000150291.2 +42882 chr22 HAVANA gene 49902228 49904576 2349.0 + 0 ENSG00000273192.1 lincRNA AL671710.1 2 OTTHUMG00000186143.1 +42883 chr22 HAVANA gene 49900229 49918458 5350.0 - 0 ENSG00000182858.13 protein_coding ALG12 1 OTTHUMG00000150289.3 +42884 chr22 HAVANA gene 49918167 49927540 5165.0 + 0 ENSG00000184164.14 protein_coding CRELD2 2 OTTHUMG00000150292.5 +42885 chr22 HAVANA gene 49933198 49934074 877.0 - 0 ENSG00000278869.1 lincRNA BX539320.1 2 OTTHUMG00000189148.1 +42886 chr22 ENSEMBL gene 49962866 49962939 74.0 + 0 ENSG00000276753.1 miRNA MIR6821 3 +42887 chr22 HAVANA gene 49960513 49964080 2461.0 + 0 ENSG00000198355.4 protein_coding PIM3 2 OTTHUMG00000150290.1 ncRNA_host +42888 chr22 HAVANA gene 49994513 50012659 3696.0 - 0 ENSG00000188263.10 protein_coding IL17REL 2 OTTHUMG00000150242.1 +42889 chr22 HAVANA gene 50015123 50056935 2707.0 - 0 ENSG00000138892.11 protein_coding TTLL8 1 OTTHUMG00000150241.7 +42890 chr22 HAVANA gene 50059391 50085902 4297.0 - 0 ENSG00000100427.15 protein_coding MLC1 2 OTTHUMG00000150236.3 +42891 chr22 HAVANA gene 50092745 50096437 3693.0 + 0 ENSG00000280395.1 sense_overlapping AL034546.1 2 OTTHUMG00000189186.1 overlapping_locus +42892 chr22 HAVANA gene 50089879 50161690 6872.0 + 0 ENSG00000073146.15 protein_coding MOV10L1 2 OTTHUMG00000044648.4 +42893 chr22 HAVANA gene 50170731 50180294 3102.0 + 0 ENSG00000073150.13 protein_coding PANX2 2 OTTHUMG00000044649.4 +42894 chr22 HAVANA gene 50191724 50192402 679.0 - 0 ENSG00000273188.1 antisense AL022328.3 2 OTTHUMG00000186122.1 +42895 chr22 HAVANA gene 50185915 50199598 3153.0 + 0 ENSG00000170638.9 protein_coding TRABD 1 OTTHUMG00000044644.3 +42896 chr22 HAVANA gene 50199090 50200837 1001.0 - 0 ENSG00000273253.2 antisense AL022328.4 2 OTTHUMG00000186123.4 +42897 chr22 HAVANA gene 50205585 50206062 478.0 - 0 ENSG00000272836.1 antisense AL022328.1 2 OTTHUMG00000186124.1 +42898 chr22 HAVANA gene 50208461 50209542 640.0 - 0 ENSG00000273137.1 antisense AL022328.2 2 OTTHUMG00000186125.1 +42899 chr22 HAVANA gene 50200979 50217616 2363.0 + 0 ENSG00000073169.13 protein_coding SELENOO 2 OTTHUMG00000044645.3 +42900 chr22 HAVANA gene 50217689 50244992 7689.0 - 0 ENSG00000128159.11 protein_coding TUBGCP6 1 OTTHUMG00000030150.6 +42901 chr22 HAVANA gene 50245183 50251405 4951.0 - 0 ENSG00000100429.17 protein_coding HDAC10 2 OTTHUMG00000044647.6 overlapping_locus +42902 chr22 HAVANA gene 50245450 50261825 9424.0 - 0 ENSG00000188130.13 protein_coding MAPK12 2 OTTHUMG00000030145.4 overlapping_locus +42903 chr22 HAVANA gene 50263713 50270767 2688.0 - 0 ENSG00000185386.14 protein_coding MAPK11 2 OTTHUMG00000150226.1 +42904 chr22 HAVANA gene 50274979 50307627 7257.0 - 0 ENSG00000196576.14 protein_coding PLXNB2 2 OTTHUMG00000150219.8 +42905 chr22 HAVANA gene 50314631 50316008 531.0 + 0 ENSG00000227484.1 antisense CR559946.1 2 OTTHUMG00000150220.1 +42906 chr22 HAVANA gene 50316035 50317025 991.0 + 0 ENSG00000279182.1 antisense CR559946.2 2 OTTHUMG00000189185.1 +42907 chr22 HAVANA gene 50309030 50327060 5935.0 - 0 ENSG00000205593.11 protein_coding DENND6B 1 OTTHUMG00000150210.6 +42908 chr22 HAVANA gene 50343304 50445090 5349.0 + 0 ENSG00000100239.15 protein_coding PPP6R2 2 OTTHUMG00000150199.4 +42909 chr22 HAVANA gene 50445000 50475024 9441.0 - 0 ENSG00000100241.20 protein_coding SBF1 2 OTTHUMG00000150204.3 +42910 chr22 HAVANA gene 50481556 50486440 4276.0 + 0 ENSG00000128165.8 protein_coding ADM2 2 OTTHUMG00000150202.1 +42911 chr22 HAVANA gene 50486784 50490648 1796.0 + 0 ENSG00000100253.12 protein_coding MIOX 2 OTTHUMG00000150207.1 +42912 chr22 HAVANA gene 50502949 50507691 3054.0 - 0 ENSG00000100258.17 protein_coding LMF2 2 OTTHUMG00000150206.2 +42913 chr22 HAVANA gene 50508216 50523472 3159.0 + 0 ENSG00000025770.18 protein_coding NCAPH2 2 OTTHUMG00000150205.6 +42914 chr22 HAVANA gene 50523926 50524780 855.0 + 0 ENSG00000272821.1 antisense U62317.2 2 OTTHUMG00000186256.1 +42915 chr22 HAVANA gene 50523568 50525606 1022.0 - 0 ENSG00000130489.14 protein_coding SCO2 2 OTTHUMG00000191637.1 overlapping_locus,retrogene +42916 chr22 HAVANA gene 50523568 50526439 1196.0 - 0 ENSG00000284194.1 protein_coding SCO2 2 OTTHUMG00000150251.3 overlapping_locus +42917 chr22 HAVANA gene 50525752 50530056 3320.0 - 0 ENSG00000025708.13 protein_coding TYMP 1 OTTHUMG00000150249.2 overlapping_locus +42918 chr22 HAVANA gene 50529710 50532580 2301.0 - 0 ENSG00000177989.13 protein_coding ODF3B 1 OTTHUMG00000150334.3 overlapping_locus +42919 chr22 HAVANA gene 50542305 50542906 602.0 - 0 ENSG00000272666.1 lincRNA U62317.1 2 OTTHUMG00000186141.1 +42920 chr22 HAVANA gene 50542650 50543011 362.0 + 0 ENSG00000273272.1 lincRNA U62317.4 2 OTTHUMG00000186142.1 +42921 chr22 HAVANA gene 50545891 50551023 5133.0 + 0 ENSG00000130487.7 protein_coding KLHDC7B 2 OTTHUMG00000150250.4 +42922 chr22 HAVANA gene 50551112 50562905 475.0 - 0 ENSG00000217442.3 protein_coding SYCE3 1 OTTHUMG00000150273.2 +42923 chr22 HAVANA gene 50568861 50578465 4102.0 - 0 ENSG00000205560.12 protein_coding CPT1B 2 OTTHUMG00000137390.12 overlapping_locus +42924 chr22 HAVANA gene 50568869 50582965 5022.0 - 0 ENSG00000254413.8 protein_coding CHKB-CPT1B 2 OTTHUMG00000166282.1 overlapping_locus +42925 chr22 HAVANA gene 50583026 50587640 1169.0 + 0 ENSG00000205559.4 antisense CHKB-DT 1 OTTHUMG00000150208.2 +42926 chr22 HAVANA gene 50597152 50597599 448.0 + 0 ENSG00000272940.1 lincRNA U62317.3 2 OTTHUMG00000186119.1 +42927 chr22 HAVANA gene 50578949 50601455 3021.0 - 0 ENSG00000100288.19 protein_coding CHKB 2 OTTHUMG00000150275.5 overlapping_locus +42928 chr22 HAVANA gene 50600685 50613981 5901.0 + 0 ENSG00000008735.13 protein_coding MAPK8IP2 2 OTTHUMG00000150181.7 +42929 chr22 HAVANA gene 50622754 50628173 2932.0 - 0 ENSG00000100299.17 protein_coding ARSA 2 OTTHUMG00000150180.3 +42930 chr22 ENSEMBL gene 50669804 50669901 98.0 + 0 ENSG00000212569.1 misc_RNA RF00019 3 +42931 chr22 ENSEMBL gene 50691260 50691363 104.0 - 0 ENSG00000206841.1 snRNA RNU6-409P 3 +42932 chr22 HAVANA gene 50674415 50733298 7455.0 + 0 ENSG00000251322.7 protein_coding SHANK3 2 OTTHUMG00000150169.2 reference_genome_error +42933 chr22 HAVANA gene 50735825 50738139 2030.0 - 0 ENSG00000225929.1 antisense AC000036.1 1 OTTHUMG00000150170.1 +42934 chr22 HAVANA gene 50740593 50743520 284.0 - 0 ENSG00000254499.1 antisense AC002056.2 2 OTTHUMG00000166231.1 +42935 chr22 HAVANA gene 50738196 50745334 2059.0 + 0 ENSG00000100312.10 protein_coding ACR 1 OTTHUMG00000150155.3 +42936 chr22 HAVANA gene 50754675 50755434 760.0 - 0 ENSG00000213683.4 processed_pseudogene AC002056.1 1 OTTHUMG00000150159.1 pseudo_consens +42937 chr22 HAVANA gene 50767501 50783663 5870.0 - 0 ENSG00000079974.17 protein_coding RABL2B 2 OTTHUMG00000150156.5 +42938 chr22 HAVANA gene 50756948 50801309 4250.0 + 0 ENSG00000184319.15 transcribed_unprocessed_pseudogene RPL23AP82 1 OTTHUMG00000150154.3 pseudo_consens +42939 chr3 HAVANA gene 23757 24501 590.0 + 0 ENSG00000223587.1 lincRNA LINC01986 2 OTTHUMG00000154851.2 +42940 chr3 HAVANA gene 53348 54346 399.0 - 0 ENSG00000224918.1 lincRNA AC066595.1 2 OTTHUMG00000154852.1 +42941 chr3 HAVANA gene 195758 197341 883.0 - 0 ENSG00000224318.5 processed_transcript CHL1-AS2 2 OTTHUMG00000154872.1 +42942 chr3 ENSEMBL gene 282689 282792 104.0 - 0 ENSG00000252017.1 snRNA RNU6-1194P 3 +42943 chr3 HAVANA gene 308714 309322 609.0 - 0 ENSG00000231660.1 processed_pseudogene RPS8P6 1 OTTHUMG00000157085.1 pseudo_consens +42944 chr3 HAVANA gene 363370 385795 1149.0 - 0 ENSG00000234661.2 antisense CHL1-AS1 2 OTTHUMG00000154873.2 +42945 chr3 HAVANA gene 196596 409417 11861.0 + 0 ENSG00000134121.9 protein_coding CHL1 2 OTTHUMG00000090601.11 +42946 chr3 HAVANA gene 617789 618314 526.0 - 0 ENSG00000238075.1 processed_pseudogene RPSAP32 1 OTTHUMG00000154877.1 pseudo_consens +42947 chr3 HAVANA gene 536231 846015 4075.0 + 0 ENSG00000224957.5 lincRNA LINC01266 2 OTTHUMG00000154876.1 +42948 chr3 HAVANA gene 857124 858091 497.0 + 0 ENSG00000224239.1 lincRNA AC090044.1 2 OTTHUMG00000154884.1 +42949 chr3 HAVANA gene 1008135 1012934 3699.0 + 0 ENSG00000235158.1 lincRNA AC087430.1 2 OTTHUMG00000154883.1 +42950 chr3 ENSEMBL gene 1065580 1065875 296.0 - 0 ENSG00000244169.3 misc_RNA RN7SL120P 3 +42951 chr3 HAVANA gene 1394173 1394448 276.0 - 0 ENSG00000232563.1 processed_pseudogene CRB3P1 1 OTTHUMG00000154882.1 pseudo_consens +42952 chr3 HAVANA gene 1092576 1404217 5589.0 + 0 ENSG00000134115.12 protein_coding CNTN6 2 OTTHUMG00000119030.2 +42953 chr3 HAVANA gene 1595777 1596245 469.0 - 0 ENSG00000184423.5 processed_pseudogene RPL23AP38 1 OTTHUMG00000154860.1 pseudo_consens +42954 chr3 HAVANA gene 1730070 1730474 405.0 + 0 ENSG00000214074.3 processed_pseudogene RPL23AP39 1 OTTHUMG00000154859.1 pseudo_consens +42955 chr3 HAVANA gene 1905651 1906125 475.0 + 0 ENSG00000214073.2 processed_pseudogene RPL21P17 1 OTTHUMG00000154858.1 pseudo_consens +42956 chr3 HAVANA gene 1962381 1987470 357.0 - 0 ENSG00000225044.1 lincRNA AC018814.1 2 OTTHUMG00000156184.1 +42957 chr3 ENSEMBL gene 2088933 2089211 279.0 - 0 ENSG00000223040.1 misc_RNA RN7SKP144 3 +42958 chr3 HAVANA gene 2110409 2144241 426.0 - 0 ENSG00000227588.2 lincRNA CNTN4-AS2 1 OTTHUMG00000156185.2 +42959 chr3 HAVANA gene 2362258 2362738 481.0 + 0 ENSG00000230398.1 processed_pseudogene HINT2P1 1 OTTHUMG00000154863.1 pseudo_consens,overlapping_locus +42960 chr3 HAVANA gene 2985231 2985575 345.0 - 0 ENSG00000225310.1 processed_pseudogene DNAJC19P4 1 OTTHUMG00000154879.1 pseudo_consens +42961 chr3 HAVANA gene 2098813 3057956 9120.0 + 0 ENSG00000144619.14 protein_coding CNTN4 1 OTTHUMG00000119031.11 overlapping_locus +42962 chr3 HAVANA gene 3039033 3069242 2078.0 - 0 ENSG00000237990.3 antisense CNTN4-AS1 2 OTTHUMG00000154875.4 +42963 chr3 ENSEMBL gene 3102913 3103015 103.0 + 0 ENSG00000253049.1 snoRNA RF00416 3 +42964 chr3 HAVANA gene 3066326 3126613 6600.0 - 0 ENSG00000091181.19 protein_coding IL5RA 1 OTTHUMG00000090245.6 +42965 chr3 HAVANA gene 3126916 3150879 5518.0 + 0 ENSG00000072756.16 protein_coding TRNT1 2 OTTHUMG00000090259.11 +42966 chr3 HAVANA gene 3152942 3153435 494.0 + 0 ENSG00000271870.1 antisense AC024060.1 2 OTTHUMG00000185398.1 +42967 chr3 HAVANA gene 3144628 3179727 8068.0 - 0 ENSG00000113851.14 protein_coding CRBN 2 OTTHUMG00000090261.7 +42968 chr3 HAVANA gene 3250687 3627296 1337.0 - 0 ENSG00000223727.6 lincRNA AC034195.1 2 OTTHUMG00000154935.6 +42969 chr3 HAVANA gene 3799437 3847703 4264.0 + 0 ENSG00000175928.5 protein_coding LRRN1 1 OTTHUMG00000154934.2 +42970 chr3 HAVANA gene 3981981 3984295 2315.0 - 0 ENSG00000229241.1 processed_pseudogene PNPT1P1 1 OTTHUMG00000155238.1 pseudo_consens,overlapping_locus +42971 chr3 HAVANA gene 4303304 4317567 3567.0 + 0 ENSG00000170364.12 protein_coding SETMAR 1 OTTHUMG00000090265.9 +42972 chr3 HAVANA gene 4414580 4414960 381.0 - 0 ENSG00000234325.1 processed_pseudogene MRPS10P2 1 OTTHUMG00000154995.1 pseudo_consens,overlapping_locus +42973 chr3 HAVANA gene 3700814 4467281 6952.0 - 0 ENSG00000144455.13 protein_coding SUMF1 1 OTTHUMG00000090269.5 overlapping_locus +42974 chr3 HAVANA gene 4490891 4493163 858.0 - 0 ENSG00000231249.1 antisense ITPR1-DT 1 OTTHUMG00000154994.1 +42975 chr3 ENSEMBL gene 4750333 4750685 353.0 + 0 ENSG00000275981.1 misc_RNA AC018816.2 3 +42976 chr3 HAVANA gene 4749192 4751590 1464.0 - 0 ENSG00000235947.1 lincRNA EGOT 2 OTTHUMG00000156235.2 +42977 chr3 HAVANA gene 4493345 4847840 32454.0 + 0 ENSG00000150995.19 protein_coding ITPR1 2 OTTHUMG00000154996.16 ncRNA_host +42978 chr3 HAVANA gene 4814294 4887293 1251.0 - 0 ENSG00000235978.6 antisense AC018816.1 1 OTTHUMG00000155240.1 +42979 chr3 HAVANA gene 4896809 4979961 2717.0 - 0 ENSG00000235831.6 antisense BHLHE40-AS1 2 OTTHUMG00000155242.2 +42980 chr3 HAVANA gene 4979116 4985323 3837.0 + 0 ENSG00000134107.4 protein_coding BHLHE40 2 OTTHUMG00000119035.2 +42981 chr3 HAVANA gene 5068676 5069044 369.0 - 0 ENSG00000230182.1 processed_pseudogene RNF10P1 1 OTTHUMG00000155237.1 pseudo_consens +42982 chr3 HAVANA gene 5080212 5084429 2112.0 - 0 ENSG00000224082.1 unprocessed_pseudogene UBTFL8 1 OTTHUMG00000155239.2 pseudo_consens +42983 chr3 ENSEMBL gene 5086178 5086279 102.0 - 0 ENSG00000207283.1 misc_RNA RF00019 3 +42984 chr3 HAVANA gene 5099627 5099861 235.0 + 0 ENSG00000237566.1 processed_pseudogene AC090955.1 2 OTTHUMG00000155241.1 +42985 chr3 HAVANA gene 5122220 5180912 3576.0 + 0 ENSG00000134108.12 protein_coding ARL8B 2 OTTHUMG00000090463.4 +42986 chr3 HAVANA gene 5156905 5187329 672.0 - 0 ENSG00000233912.1 antisense AC026202.2 2 OTTHUMG00000154898.1 overlapping_locus +42987 chr3 HAVANA gene 5187172 5188298 1127.0 - 0 ENSG00000268509.2 antisense AC026202.3 2 OTTHUMG00000187143.1 overlapping_locus +42988 chr3 HAVANA gene 5187646 5219957 6758.0 + 0 ENSG00000134109.10 protein_coding EDEM1 2 OTTHUMG00000154896.3 +42989 chr3 ENSEMBL gene 5250177 5250255 79.0 - 0 ENSG00000265180.1 miRNA MIR4790 3 +42990 chr3 ENSEMBL gene 5252926 5253223 298.0 - 0 ENSG00000241227.3 misc_RNA RN7SL553P 3 +42991 chr3 HAVANA gene 5255535 5256761 585.0 - 0 ENSG00000230944.1 lincRNA AC026202.1 2 OTTHUMG00000154903.1 +42992 chr3 HAVANA gene 5962842 6124120 467.0 + 0 ENSG00000229642.1 lincRNA AC087857.1 2 OTTHUMG00000154907.1 +42993 chr3 HAVANA gene 6208269 6208571 241.0 + 0 ENSG00000232958.1 unprocessed_pseudogene AC027119.1 1 OTTHUMG00000154906.1 pseudo_consens,overlapping_locus +42994 chr3 HAVANA gene 6148484 6365885 299.0 + 0 ENSG00000226022.1 lincRNA AC026167.1 2 OTTHUMG00000154909.1 overlapping_locus +42995 chr3 HAVANA gene 6692319 6693088 432.0 + 0 ENSG00000223719.1 processed_pseudogene AC069277.2 1 OTTHUMG00000154925.1 pseudo_consens,overlapping_locus +42996 chr3 HAVANA gene 6490479 6736129 3023.0 + 0 ENSG00000189229.10 lincRNA AC069277.1 2 OTTHUMG00000154923.2 overlapping_locus +42997 chr3 HAVANA gene 6773037 6773343 307.0 - 0 ENSG00000236152.1 processed_pseudogene MRPS36P1 1 OTTHUMG00000154924.1 pseudo_consens,overlapping_locus +42998 chr3 HAVANA gene 6631689 6805449 2974.0 - 0 ENSG00000226258.6 lincRNA GRM7-AS3 2 OTTHUMG00000154912.5 overlapping_locus +42999 chr3 HAVANA gene 6892632 6894022 520.0 - 0 ENSG00000237665.1 antisense GRM7-AS2 2 OTTHUMG00000154931.1 +43000 chr3 HAVANA gene 7519741 7560333 507.0 - 0 ENSG00000236202.1 antisense GRM7-AS1 2 OTTHUMG00000154932.1 +43001 chr3 HAVANA gene 7606890 7607897 1008.0 - 0 ENSG00000270207.1 antisense AC068313.1 2 OTTHUMG00000185123.1 +43002 chr3 HAVANA gene 6770001 7741533 8214.0 + 0 ENSG00000196277.15 protein_coding GRM7 1 OTTHUMG00000125549.15 +43003 chr3 HAVANA gene 8079322 8125538 1319.0 + 0 ENSG00000228351.2 lincRNA AC018832.1 2 OTTHUMG00000154970.2 +43004 chr3 ENSEMBL gene 8364529 8364648 120.0 - 0 ENSG00000253081.1 snRNA RNU4ATAC17P 3 +43005 chr3 HAVANA gene 8364707 8366392 938.0 - 0 ENSG00000231401.1 lincRNA AC023481.1 2 OTTHUMG00000154972.1 overlapping_locus +43006 chr3 HAVANA gene 8501707 8574673 9130.0 + 0 ENSG00000071282.11 protein_coding LMCD1 1 OTTHUMG00000154971.5 +43007 chr3 HAVANA gene 8573726 8593124 561.0 - 0 ENSG00000224884.1 lincRNA AC034187.1 2 OTTHUMG00000154969.1 overlapping_locus +43008 chr3 HAVANA gene 7952805 8611924 6458.0 - 0 ENSG00000227110.6 antisense LMCD1-AS1 2 OTTHUMG00000154968.1 ncRNA_host,overlapping_locus +43009 chr3 HAVANA gene 8682943 8693701 6210.0 + 0 ENSG00000215160.3 transcribed_unprocessed_pseudogene OR7E122P 1 OTTHUMG00000155006.2 pseudo_consens +43010 chr3 HAVANA gene 8619400 8745040 6279.0 - 0 ENSG00000125046.14 protein_coding SSUH2 2 OTTHUMG00000122075.5 +43011 chr3 HAVANA gene 8750408 8769628 4514.0 - 0 ENSG00000180914.10 protein_coding OXTR 2 OTTHUMG00000090537.3 +43012 chr3 HAVANA gene 8733800 8841808 1956.0 + 0 ENSG00000182533.6 protein_coding CAV3 2 OTTHUMG00000090519.3 +43013 chr3 ENSEMBL gene 8931506 8931631 126.0 + 0 ENSG00000199815.2 snoRNA RF00560 3 +43014 chr3 ENSEMBL gene 8931495 8931632 138.0 + 0 ENSG00000281863.1 snoRNA RF00416 3 +43015 chr3 HAVANA gene 8775402 8963773 6983.0 - 0 ENSG00000070950.9 protein_coding RAD18 2 OTTHUMG00000090545.5 +43016 chr3 HAVANA gene 9014123 9015979 428.0 + 0 ENSG00000224808.1 antisense SRGAP3-AS1 2 OTTHUMG00000155031.1 +43017 chr3 HAVANA gene 9192493 9194453 1439.0 + 0 ENSG00000228723.6 antisense SRGAP3-AS2 2 OTTHUMG00000155019.4 +43018 chr3 HAVANA gene 9216895 9219508 1223.0 + 0 ENSG00000227929.4 antisense SRGAP3-AS3 2 OTTHUMG00000155028.2 +43019 chr3 HAVANA gene 9256759 9257507 377.0 + 0 ENSG00000235830.1 lincRNA SRGAP3-AS4 2 OTTHUMG00000155030.1 +43020 chr3 HAVANA gene 9348443 9349192 750.0 + 0 ENSG00000214041.4 processed_pseudogene PGAM1P4 1 OTTHUMG00000155029.1 pseudo_consens +43021 chr3 HAVANA gene 8980591 9363053 18924.0 - 0 ENSG00000196220.15 protein_coding SRGAP3 2 OTTHUMG00000090589.11 overlapping_locus +43022 chr3 HAVANA gene 9292588 9363303 1649.0 - 0 ENSG00000254485.5 antisense AC026191.1 2 OTTHUMG00000165687.1 overlapping_locus +43023 chr3 HAVANA gene 9362842 9386791 5365.0 + 0 ENSG00000134077.15 protein_coding THUMPD3 1 OTTHUMG00000097031.7 +43024 chr3 HAVANA gene 9349689 9398579 6275.0 - 0 ENSG00000206573.8 antisense THUMPD3-AS1 2 OTTHUMG00000164357.4 overlapping_locus +43025 chr3 HAVANA gene 9397615 9479240 10808.0 + 0 ENSG00000168137.15 protein_coding SETD5 1 OTTHUMG00000150491.6 +43026 chr3 HAVANA gene 9498361 9553802 5329.0 - 0 ENSG00000156959.8 protein_coding LHFPL4 2 OTTHUMG00000155066.2 +43027 chr3 HAVANA gene 9600748 9602728 1033.0 + 0 ENSG00000235338.1 processed_pseudogene DUSP5P2 1 OTTHUMG00000155065.1 pseudo_consens +43028 chr3 HAVANA gene 9649433 9702393 6019.0 + 0 ENSG00000163719.19 protein_coding MTMR14 1 OTTHUMG00000155111.4 +43029 chr3 HAVANA gene 9703807 9729908 2335.0 + 0 ENSG00000144550.12 protein_coding CPNE9 2 OTTHUMG00000128418.5 +43030 chr3 HAVANA gene 9731729 9748018 5477.0 + 0 ENSG00000156983.15 protein_coding BRPF1 1 OTTHUMG00000097033.4 +43031 chr3 HAVANA gene 9757342 9769992 2720.0 - 0 ENSG00000134072.10 protein_coding CAMK1 2 OTTHUMG00000128419.3 +43032 chr3 HAVANA gene 9749944 9788219 8733.0 + 0 ENSG00000114026.21 protein_coding OGG1 1 OTTHUMG00000097091.11 +43033 chr3 HAVANA gene 9779860 9793011 4234.0 - 0 ENSG00000171148.13 protein_coding TADA3 2 OTTHUMG00000128440.4 +43034 chr3 HAVANA gene 9792495 9807726 3608.0 + 0 ENSG00000241553.12 protein_coding ARPC4 1 OTTHUMG00000133768.5 overlapping_locus +43035 chr3 HAVANA gene 9812762 9813097 336.0 - 0 ENSG00000269886.1 antisense AC022382.1 2 OTTHUMG00000183937.1 +43036 chr3 HAVANA gene 9793082 9835401 2765.0 + 0 ENSG00000250151.9 protein_coding ARPC4-TTLL3 1 OTTHUMG00000161408.3 overlapping_locus +43037 chr3 HAVANA gene 9837849 9844602 5348.0 - 0 ENSG00000156990.14 protein_coding RPUSD3 1 OTTHUMG00000128441.5 +43038 chr3 HAVANA gene 9808086 9855138 10365.0 + 0 ENSG00000214021.15 protein_coding TTLL3 1 OTTHUMG00000128439.13 overlapping_locus +43039 chr3 HAVANA gene 9866711 9880254 1926.0 - 0 ENSG00000187288.10 protein_coding CIDEC 2 OTTHUMG00000128522.4 +43040 chr3 HAVANA gene 9890572 9894349 1781.0 + 0 ENSG00000171135.14 protein_coding JAGN1 2 OTTHUMG00000128523.4 +43041 chr3 HAVANA gene 9902612 9916402 4676.0 + 0 ENSG00000163701.18 protein_coding IL17RE 2 OTTHUMG00000128649.4 +43042 chr3 ENSEMBL gene 9919051 9919153 103.0 - 0 ENSG00000212327.1 snRNA RNU6-882P 3 +43043 chr3 HAVANA gene 9917074 9933630 4540.0 + 0 ENSG00000163702.19 protein_coding IL17RC 2 OTTHUMG00000128648.43 +43044 chr3 HAVANA gene 9935706 9936258 553.0 + 0 ENSG00000269894.1 sense_intronic AC018809.1 2 OTTHUMG00000183938.1 overlapping_locus +43045 chr3 HAVANA gene 9933822 9945413 3778.0 + 0 ENSG00000163703.17 protein_coding CRELD1 1 OTTHUMG00000128653.3 overlapping_locus +43046 chr3 HAVANA gene 9945542 9952394 3939.0 - 0 ENSG00000163704.11 protein_coding PRRT3 2 OTTHUMG00000155285.2 +43047 chr3 HAVANA gene 9947404 9954787 614.0 + 0 ENSG00000230082.1 antisense PRRT3-AS1 2 OTTHUMG00000155293.2 +43048 chr3 HAVANA gene 9958717 9962539 3823.0 + 0 ENSG00000269982.1 antisense AC018809.2 2 OTTHUMG00000183939.1 +43049 chr3 HAVANA gene 10000647 10000940 294.0 - 0 ENSG00000232901.1 processed_pseudogene CYCSP10 1 OTTHUMG00000155302.1 pseudo_consens,overlapping_locus +43050 chr3 HAVANA gene 9986893 10006990 3714.0 + 0 ENSG00000180385.8 transcribed_unprocessed_pseudogene EMC3-AS1 2 OTTHUMG00000155324.2 +43051 chr3 HAVANA gene 9962537 10011116 4270.0 - 0 ENSG00000125037.12 protein_coding EMC3 2 OTTHUMG00000128652.5 overlapping_locus +43052 chr3 HAVANA gene 10006418 10011209 2533.0 - 0 ENSG00000206567.9 lincRNA AC022007.1 2 OTTHUMG00000155325.3 overlapping_locus +43053 chr3 HAVANA gene 10014238 10026365 3017.0 - 0 ENSG00000186162.10 transcribed_unprocessed_pseudogene CIDECP 2 OTTHUMG00000155323.5 +43054 chr3 ENSEMBL gene 10037552 10037655 104.0 + 0 ENSG00000201182.1 snRNA RNU6-670P 3 +43055 chr3 HAVANA gene 10057973 10058287 315.0 - 0 ENSG00000229217.1 processed_pseudogene CYCSP11 1 OTTHUMG00000155399.1 pseudo_consens +43056 chr3 HAVANA gene 10026414 10101930 8378.0 + 0 ENSG00000144554.10 protein_coding FANCD2 2 OTTHUMG00000128670.3 ncRNA_host +43057 chr3 HAVANA gene 10081317 10108231 1895.0 - 0 ENSG00000163705.12 protein_coding FANCD2OS 1 OTTHUMG00000128669.3 +43058 chr3 HAVANA gene 10115592 10127190 1233.0 + 0 ENSG00000254999.3 protein_coding BRK1 2 OTTHUMG00000155400.2 +43059 chr3 HAVANA gene 10141008 10152220 4213.0 + 0 ENSG00000134086.7 protein_coding VHL 2 OTTHUMG00000128668.2 +43060 chr3 HAVANA gene 10164865 10243743 3483.0 + 0 ENSG00000134070.4 protein_coding IRAK2 2 OTTHUMG00000155358.1 +43061 chr3 HAVANA gene 10248023 10281218 5572.0 + 0 ENSG00000157014.10 protein_coding TATDN2 2 OTTHUMG00000155361.1 overlapping_locus +43062 chr3 HAVANA gene 10284419 10285746 1328.0 + 0 ENSG00000231177.4 antisense LINC00852 2 OTTHUMG00000155362.1 overlapping_locus +43063 chr3 HAVANA gene 10249372 10285796 2977.0 + 0 ENSG00000272410.5 protein_coding AC022384.1 2 OTTHUMG00000185357.1 overlapping_locus +43064 chr3 ENSEMBL gene 10287413 10287482 70.0 + 0 ENSG00000276678.1 misc_RNA RF02126 3 +43065 chr3 HAVANA gene 10285675 10292947 2064.0 - 0 ENSG00000157017.15 protein_coding GHRL 2 OTTHUMG00000155360.5 +43066 chr3 HAVANA gene 10285754 10293449 1712.0 + 0 ENSG00000240288.7 antisense GHRLOS 2 OTTHUMG00000155359.3 ncRNA_host,overlapping_locus +43067 chr3 HAVANA gene 10293131 10321178 5446.0 - 0 ENSG00000157020.17 protein_coding SEC13 1 OTTHUMG00000128671.8 +43068 chr3 ENSEMBL gene 10330229 10330285 57.0 + 0 ENSG00000264534.3 miRNA MIR378B 3 +43069 chr3 ENSEMBL gene 10394489 10394562 74.0 - 0 ENSG00000216135.3 miRNA MIR885 3 +43070 chr3 HAVANA gene 10566255 10570375 472.0 - 0 ENSG00000236999.1 sense_intronic ATP2B2-IT1 2 OTTHUMG00000140094.1 +43071 chr3 HAVANA gene 10626021 10626807 507.0 - 0 ENSG00000224771.1 sense_intronic ATP2B2-IT2 2 OTTHUMG00000140095.2 +43072 chr3 HAVANA gene 10324023 10708007 10331.0 - 0 ENSG00000157087.18 protein_coding ATP2B2 2 OTTHUMG00000128679.18 ncRNA_host +43073 chr3 HAVANA gene 10759484 10764192 2960.0 - 0 ENSG00000226567.1 lincRNA LINC00606 2 OTTHUMG00000155455.1 +43074 chr3 HAVANA gene 10767464 10771718 452.0 + 0 ENSG00000230599.2 lincRNA AC018495.1 1 OTTHUMG00000155454.2 +43075 chr3 HAVANA gene 10816200 10940733 6700.0 + 0 ENSG00000132164.9 protein_coding SLC6A11 2 OTTHUMG00000129718.2 +43076 chr3 HAVANA gene 11006098 11019224 584.0 - 0 ENSG00000232287.2 antisense SLC6A1-AS1 1 OTTHUMG00000155456.2 +43077 chr3 HAVANA gene 10992186 11039249 18276.0 + 0 ENSG00000157103.11 protein_coding SLC6A1 2 OTTHUMG00000044208.8 +43078 chr3 HAVANA gene 11193439 11225877 996.0 - 0 ENSG00000285906.1 antisense AC083855.2 2 OTTHUMG00000193244.1 +43079 chr3 HAVANA gene 11234256 11234582 327.0 - 0 ENSG00000213964.3 processed_pseudogene CHCHD4P4 1 OTTHUMG00000155252.1 pseudo_consens +43080 chr3 HAVANA gene 11137093 11263557 5546.0 + 0 ENSG00000196639.6 protein_coding HRH1 2 OTTHUMG00000129719.5 +43081 chr3 HAVANA gene 11290406 11290663 258.0 - 0 ENSG00000226621.1 processed_pseudogene AC083855.1 1 OTTHUMG00000155251.1 pseudo_consens +43082 chr3 HAVANA gene 11488300 11488473 174.0 - 0 ENSG00000235240.1 unprocessed_pseudogene AC026185.1 2 OTTHUMG00000155250.1 +43083 chr3 HAVANA gene 11529488 11529755 268.0 - 0 ENSG00000270531.1 processed_pseudogene AC022001.1 1 OTTHUMG00000184402.1 pseudo_consens +43084 chr3 HAVANA gene 11272309 11557665 8833.0 + 0 ENSG00000197548.12 protein_coding ATG7 1 OTTHUMG00000129740.21 +43085 chr3 HAVANA gene 11607184 11610748 580.0 + 0 ENSG00000271716.1 antisense AC022001.2 2 OTTHUMG00000185400.1 +43086 chr3 HAVANA gene 11611602 11612197 596.0 + 0 ENSG00000272483.1 antisense AC022001.3 2 OTTHUMG00000185401.1 +43087 chr3 HAVANA gene 11556070 11771350 7236.0 - 0 ENSG00000144560.14 protein_coding VGLL4 1 OTTHUMG00000129739.20 +43088 chr3 HAVANA gene 11790442 11846919 5925.0 - 0 ENSG00000144559.10 protein_coding TAMM41 2 OTTHUMG00000129741.4 +43089 chr3 HAVANA gene 11878830 11879129 300.0 - 0 ENSG00000224263.1 processed_pseudogene CYCSP12 1 OTTHUMG00000155299.1 pseudo_consens +43090 chr3 HAVANA gene 11859674 11891172 1400.0 + 0 ENSG00000230342.2 unprocessed_pseudogene FANCD2P2 2 OTTHUMG00000155298.1 +43091 chr3 HAVANA gene 11900011 11901245 282.0 + 0 ENSG00000225275.4 unprocessed_pseudogene NUP210P2 2 OTTHUMG00000155295.1 +43092 chr3 HAVANA gene 11909634 11910765 351.0 - 0 ENSG00000251038.1 unprocessed_pseudogene AC090958.1 2 OTTHUMG00000155294.1 +43093 chr3 HAVANA gene 11906527 11912313 628.0 + 0 ENSG00000231897.1 unprocessed_pseudogene MARK2P14 1 OTTHUMG00000155297.1 pseudo_consens +43094 chr3 ENSEMBL gene 11952788 11953085 298.0 - 0 ENSG00000263988.2 misc_RNA RN7SL147P 3 +43095 chr3 HAVANA gene 12070195 12071360 1166.0 + 0 ENSG00000226642.1 processed_pseudogene ACTG1P12 1 OTTHUMG00000155334.1 pseudo_consens,overlapping_locus +43096 chr3 HAVANA gene 12153051 12159351 1650.0 - 0 ENSG00000157150.4 protein_coding TIMP4 2 OTTHUMG00000129763.1 +43097 chr3 HAVANA gene 12165299 12165642 344.0 - 0 ENSG00000233026.1 processed_pseudogene MTCO1P5 2 OTTHUMG00000155369.1 +43098 chr3 HAVANA gene 12004402 12191400 5683.0 + 0 ENSG00000157152.16 protein_coding SYN2 2 OTTHUMG00000155335.9 overlapping_locus +43099 chr3 HAVANA gene 12257801 12258460 660.0 - 0 ENSG00000236062.1 processed_pseudogene GSTM5P1 1 OTTHUMG00000155336.1 pseudo_consens +43100 chr3 HAVANA gene 12328003 12328274 272.0 + 0 ENSG00000225026.1 processed_pseudogene AC091492.1 1 OTTHUMG00000155337.1 pseudo_consens,overlapping_locus +43101 chr3 HAVANA gene 12287368 12434356 4046.0 + 0 ENSG00000132170.20 protein_coding PPARG 1 OTTHUMG00000129764.11 overlapping_locus +43102 chr3 ENSEMBL gene 12511095 12511213 119.0 - 0 ENSG00000200114.1 rRNA_pseudogene RNA5SP123 3 +43103 chr3 ENSEMBL gene 12514706 12514807 102.0 + 0 ENSG00000251774.1 snRNA RNU6-377P 3 +43104 chr3 HAVANA gene 12484432 12539623 5667.0 + 0 ENSG00000154743.17 protein_coding TSEN2 1 OTTHUMG00000129765.21 ncRNA_host +43105 chr3 HAVANA gene 12514934 12561059 1829.0 - 0 ENSG00000225526.4 protein_coding MKRN2OS 1 OTTHUMG00000155368.9 +43106 chr3 ENSEMBL gene 12576961 12577237 277.0 - 0 ENSG00000274514.1 misc_RNA RF00017 3 +43107 chr3 HAVANA gene 12557014 12583713 2848.0 + 0 ENSG00000075975.15 protein_coding MKRN2 1 OTTHUMG00000155371.2 +43108 chr3 HAVANA gene 12583601 12664226 7847.0 - 0 ENSG00000132155.11 protein_coding RAF1 2 OTTHUMG00000129789.7 +43109 chr3 HAVANA gene 12673699 12673883 185.0 + 0 ENSG00000233252.1 processed_pseudogene CRIP1P1 1 OTTHUMG00000155339.1 pseudo_consens +43110 chr3 HAVANA gene 12733525 12769457 3562.0 - 0 ENSG00000088726.15 protein_coding TMEM40 2 OTTHUMG00000129801.3 +43111 chr3 HAVANA gene 12787393 12788671 1279.0 - 0 ENSG00000213943.3 processed_pseudogene KRT18P17 1 OTTHUMG00000155395.1 pseudo_consens +43112 chr3 HAVANA gene 12832219 12832728 510.0 - 0 ENSG00000272263.1 antisense AC034198.2 2 OTTHUMG00000185403.1 +43113 chr3 ENSEMBL gene 12840312 12840450 139.0 - 0 ENSG00000207496.1 snoRNA SNORA7A 3 +43114 chr3 HAVANA gene 12834485 12841588 3720.0 - 0 ENSG00000144713.12 protein_coding RPL32 2 OTTHUMG00000129804.4 ncRNA_host +43115 chr3 HAVANA gene 12850659 12850860 202.0 + 0 ENSG00000250939.2 transcribed_unprocessed_pseudogene AC034198.1 2 OTTHUMG00000155396.2 overlapping_locus +43116 chr3 HAVANA gene 12796472 12871916 5478.0 + 0 ENSG00000144712.12 protein_coding CAND2 1 OTTHUMG00000155397.6 overlapping_locus +43117 chr3 HAVANA gene 12877522 12885211 635.0 - 0 ENSG00000232746.1 lincRNA LINC02022 1 OTTHUMG00000155439.3 +43118 chr3 HAVANA gene 13052967 13053122 156.0 - 0 ENSG00000231362.1 processed_pseudogene AC069271.1 1 OTTHUMG00000157086.1 pseudo_consens,overlapping_locus +43119 chr3 HAVANA gene 12897220 13283281 8550.0 - 0 ENSG00000144711.15 protein_coding IQSEC1 1 OTTHUMG00000155398.8 overlapping_locus +43120 chr3 HAVANA gene 13316235 13420309 8182.0 - 0 ENSG00000132182.11 protein_coding NUP210 2 OTTHUMG00000157268.2 +43121 chr3 HAVANA gene 13460294 13460398 105.0 - 0 ENSG00000238138.1 processed_pseudogene AC027124.2 2 OTTHUMG00000155440.1 +43122 chr3 HAVANA gene 13460424 13460889 466.0 - 0 ENSG00000223398.1 processed_pseudogene AC027124.1 2 OTTHUMG00000155441.1 +43123 chr3 HAVANA gene 13476982 13480053 515.0 - 0 ENSG00000244502.2 antisense HDAC11-AS1 1 OTTHUMG00000155438.2 +43124 chr3 HAVANA gene 13479724 13506424 5281.0 + 0 ENSG00000163517.14 protein_coding HDAC11 1 OTTHUMG00000129800.8 +43125 chr3 HAVANA gene 13549131 13638422 4812.0 + 0 ENSG00000163520.13 protein_coding FBLN2 1 OTTHUMG00000155437.9 +43126 chr3 HAVANA gene 13650696 13746637 1021.0 + 0 ENSG00000224514.2 antisense LINC00620 2 OTTHUMG00000155508.2 +43127 chr3 HAVANA gene 13816258 13880121 4579.0 - 0 ENSG00000154764.5 protein_coding WNT7A 1 OTTHUMG00000129803.2 +43128 chr3 HAVANA gene 13926813 13927778 966.0 + 0 ENSG00000233121.1 unitary_pseudogene VN1R20P 2 OTTHUMG00000154485.1 +43129 chr3 HAVANA gene 13933056 13937477 3869.0 + 0 ENSG00000275340.1 transcribed_unprocessed_pseudogene FGD5P1 2 OTTHUMG00000160207.3 overlapping_locus +43130 chr3 HAVANA gene 13937273 14082811 3748.0 + 0 ENSG00000180438.15 transcribed_processed_pseudogene TPRXL 2 OTTHUMG00000155509.6 overlapping_locus +43131 chr3 HAVANA gene 14089107 14089871 765.0 - 0 ENSG00000224752.1 unitary_pseudogene VN1R21P 2 OTTHUMG00000154484.1 +43132 chr3 HAVANA gene 14112077 14124870 1772.0 - 0 ENSG00000163528.12 protein_coding CHCHD4 2 OTTHUMG00000129805.3 +43133 chr3 HAVANA gene 14124940 14143679 3572.0 + 0 ENSG00000170876.7 protein_coding TMEM43 2 OTTHUMG00000129802.4 overlapping_locus +43134 chr3 HAVANA gene 14135217 14148252 1335.0 + 0 ENSG00000268279.4 protein_coding AC090004.1 2 OTTHUMG00000182442.3 overlapping_locus +43135 chr3 HAVANA gene 14144637 14165978 4015.0 + 0 ENSG00000228242.6 antisense AC093495.1 1 OTTHUMG00000155524.6 overlapping_locus +43136 chr3 HAVANA gene 14145147 14178783 4798.0 - 0 ENSG00000154767.14 protein_coding XPC 1 OTTHUMG00000155526.5 +43137 chr3 HAVANA gene 14178358 14201119 3815.0 + 0 ENSG00000170860.3 protein_coding LSM3 2 OTTHUMG00000129838.4 +43138 chr3 HAVANA gene 14272373 14303845 613.0 - 0 ENSG00000255021.1 lincRNA AC093496.1 2 OTTHUMG00000167094.1 +43139 chr3 HAVANA gene 14348451 14352568 2284.0 - 0 ENSG00000251576.1 lincRNA LINC01267 2 OTTHUMG00000167093.1 +43140 chr3 ENSEMBL gene 14394648 14394757 110.0 + 0 ENSG00000199609.1 rRNA_pseudogene RNA5SP124 3 +43141 chr3 HAVANA gene 14402576 14489349 8254.0 + 0 ENSG00000131389.17 protein_coding SLC6A6 1 OTTHUMG00000155525.8 +43142 chr3 ENSEMBL gene 14530982 14531088 107.0 - 0 ENSG00000207163.1 snRNA RNU6-905P 3 +43143 chr3 HAVANA gene 14489111 14556075 11885.0 - 0 ENSG00000144596.12 protein_coding GRIP2 2 OTTHUMG00000155544.6 ncRNA_host +43144 chr3 HAVANA gene 14572852 14574792 1941.0 - 0 ENSG00000234123.1 processed_pseudogene RHBDF1P1 1 OTTHUMG00000155546.1 pseudo_consens +43145 chr3 HAVANA gene 14602035 14641443 1620.0 + 0 ENSG00000283392.1 lincRNA AC090952.2 2 OTTHUMG00000191809.1 +43146 chr3 HAVANA gene 14648194 14649432 446.0 - 0 ENSG00000235629.1 antisense AC090952.1 1 OTTHUMG00000155547.1 +43147 chr3 HAVANA gene 14651746 14672659 3556.0 + 0 ENSG00000154781.15 protein_coding CCDC174 2 OTTHUMG00000129837.2 +43148 chr3 HAVANA gene 14764952 14767440 1147.0 - 0 ENSG00000230172.1 antisense AC090957.1 2 OTTHUMG00000155548.2 +43149 chr3 HAVANA gene 14675099 14773034 3492.0 + 0 ENSG00000131379.9 protein_coding C3orf20 2 OTTHUMG00000155545.1 +43150 chr3 HAVANA gene 14791534 14793504 1201.0 + 0 ENSG00000285969.1 lincRNA AC087591.1 2 OTTHUMG00000192748.1 +43151 chr3 HAVANA gene 14799331 14811414 3830.0 - 0 ENSG00000260902.1 lincRNA LINC02011 2 OTTHUMG00000175698.1 +43152 chr3 HAVANA gene 14810853 14934565 8093.0 + 0 ENSG00000154783.11 protein_coding FGD5 2 OTTHUMG00000155556.6 +43153 chr3 HAVANA gene 14920347 14948424 5131.0 - 0 ENSG00000225733.5 antisense FGD5-AS1 2 OTTHUMG00000155555.1 +43154 chr3 HAVANA gene 14947584 15053600 11821.0 + 0 ENSG00000177463.15 protein_coding NR2C2 1 OTTHUMG00000129839.4 +43155 chr3 HAVANA gene 15042460 15065335 5383.0 - 0 ENSG00000131368.7 protein_coding MRPS25 1 OTTHUMG00000129836.4 +43156 chr3 HAVANA gene 15070073 15099163 7921.0 - 0 ENSG00000131381.12 protein_coding RBSN 2 OTTHUMG00000129860.7 +43157 chr3 HAVANA gene 15131848 15132208 361.0 - 0 ENSG00000228874.1 processed_pseudogene AC090954.1 1 OTTHUMG00000155574.1 pseudo_consens +43158 chr3 HAVANA gene 15141380 15142157 778.0 + 0 ENSG00000227578.1 processed_pseudogene RPS3AP53 1 OTTHUMG00000155576.1 pseudo_consens +43159 chr3 HAVANA gene 15151833 15205959 4566.0 - 0 ENSG00000230524.8 transcribed_unprocessed_pseudogene COL6A4P1 2 OTTHUMG00000154983.2 +43160 chr3 HAVANA gene 15206152 15252918 5598.0 + 0 ENSG00000131375.9 protein_coding CAPN7 2 OTTHUMG00000129863.4 +43161 chr3 HAVANA gene 15254184 15264493 5733.0 + 0 ENSG00000224660.1 antisense SH3BP5-AS1 1 OTTHUMG00000155575.2 +43162 chr3 ENSEMBL gene 15339749 15339855 107.0 + 0 ENSG00000201162.1 snRNA RNU6-454P 3 +43163 chr3 HAVANA gene 15254853 15341368 4159.0 - 0 ENSG00000131370.15 protein_coding SH3BP5 2 OTTHUMG00000129859.17 +43164 chr3 HAVANA gene 15375373 15375645 273.0 - 0 ENSG00000226427.1 processed_pseudogene HMGN2P7 1 OTTHUMG00000156873.1 pseudo_consens +43165 chr3 ENSEMBL gene 15433110 15433216 107.0 - 0 ENSG00000206926.1 snRNA RNU6-1024P 3 +43166 chr3 HAVANA gene 15381275 15440566 5714.0 - 0 ENSG00000206562.11 protein_coding METTL6 1 OTTHUMG00000156431.6 ncRNA_host,overlapping_locus +43167 chr3 HAVANA gene 15427355 15450635 5152.0 + 0 ENSG00000144597.13 protein_coding EAF1 2 OTTHUMG00000162544.2 +43168 chr3 HAVANA gene 15436171 15455940 4321.0 - 0 ENSG00000249786.7 antisense EAF1-AS1 1 OTTHUMG00000129858.7 overlapping_locus +43169 chr3 ENSEMBL gene 15496239 15496308 70.0 - 0 ENSG00000263573.1 miRNA MIR4270 3 +43170 chr3 ENSEMBL gene 15506623 15506905 283.0 - 0 ENSG00000241064.3 misc_RNA RN7SL110P 3 +43171 chr3 HAVANA gene 15450133 15521751 4175.0 - 0 ENSG00000206561.12 protein_coding COLQ 1 OTTHUMG00000156233.6 ncRNA_host,overlapping_locus +43172 chr3 HAVANA gene 15560704 15601852 3055.0 - 0 ENSG00000131373.14 protein_coding HACL1 1 OTTHUMG00000129862.8 +43173 chr3 HAVANA gene 15601341 15647640 5840.0 + 0 ENSG00000169814.13 protein_coding BTD 1 OTTHUMG00000129861.14 +43174 chr3 ENSEMBL gene 15697298 15697371 74.0 - 0 ENSG00000264354.1 miRNA MIR3134 3 +43175 chr3 HAVANA gene 15731877 15732536 660.0 + 0 ENSG00000279465.1 TEC AC090950.2 2 OTTHUMG00000184345.1 overlapping_locus +43176 chr3 HAVANA gene 15732252 15733470 1219.0 + 0 ENSG00000270409.1 transcribed_unprocessed_pseudogene AC090950.1 1 OTTHUMG00000184346.1 pseudo_consens,overlapping_locus +43177 chr3 ENSEMBL gene 15738515 15738809 295.0 + 0 ENSG00000263740.2 misc_RNA RN7SL4P 3 +43178 chr3 HAVANA gene 15667236 15859771 11276.0 - 0 ENSG00000206560.11 protein_coding ANKRD28 1 OTTHUMG00000155379.5 ncRNA_host +43179 chr3 ENSEMBL gene 15873771 15873849 79.0 + 0 ENSG00000207815.1 miRNA MIR563 3 +43180 chr3 HAVANA gene 15878047 15879571 1525.0 + 0 ENSG00000224728.1 processed_pseudogene IMPDH1P8 1 OTTHUMG00000156052.1 pseudo_consens +43181 chr3 HAVANA gene 16174649 16231992 5679.0 + 0 ENSG00000131386.18 protein_coding GALNT15 1 OTTHUMG00000156893.4 +43182 chr3 HAVANA gene 16252123 16253130 722.0 - 0 ENSG00000285654.1 lincRNA AC090953.2 2 OTTHUMG00000193143.1 +43183 chr3 HAVANA gene 16257978 16264972 3562.0 - 0 ENSG00000154813.9 protein_coding DPH3 2 OTTHUMG00000129866.2 +43184 chr3 HAVANA gene 16275060 16276632 1092.0 - 0 ENSG00000270739.1 processed_pseudogene AC090953.1 1 OTTHUMG00000184401.1 pseudo_consens +43185 chr3 HAVANA gene 16314439 16314987 549.0 + 0 ENSG00000271964.1 antisense AC090948.1 2 OTTHUMG00000185426.1 overlapping_locus +43186 chr3 HAVANA gene 16339308 16339871 564.0 + 0 ENSG00000272498.1 antisense AC090948.2 2 OTTHUMG00000185427.1 overlapping_locus +43187 chr3 HAVANA gene 16345126 16346440 551.0 + 0 ENSG00000272529.1 antisense AC090948.3 2 OTTHUMG00000185428.1 overlapping_locus +43188 chr3 HAVANA gene 16265160 16350299 6095.0 + 0 ENSG00000154814.13 protein_coding OXNAD1 2 OTTHUMG00000129867.4 overlapping_locus +43189 chr3 HAVANA gene 16313574 16514026 4776.0 - 0 ENSG00000131378.13 protein_coding RFTN1 1 OTTHUMG00000156973.4 +43190 chr3 HAVANA gene 16530771 16531802 445.0 + 0 ENSG00000269391.1 lincRNA AC010139.1 2 OTTHUMG00000182416.1 +43191 chr3 HAVANA gene 16536320 16541373 1365.0 + 0 ENSG00000233570.1 lincRNA LINC00690 1 OTTHUMG00000157049.1 +43192 chr3 HAVANA gene 16586792 16670306 3631.0 - 0 ENSG00000092345.13 protein_coding DAZL 2 OTTHUMG00000157050.11 +43193 chr3 HAVANA gene 16692745 16694202 1458.0 - 0 ENSG00000224039.1 unprocessed_pseudogene CDYLP1 1 OTTHUMG00000155460.1 pseudo_consens,overlapping_locus +43194 chr3 HAVANA gene 16687986 16697479 411.0 - 0 ENSG00000229271.1 lincRNA AC091493.1 2 OTTHUMG00000155461.2 overlapping_locus +43195 chr3 ENSEMBL gene 16933196 16933260 65.0 + 0 ENSG00000283885.1 miRNA MIR3714 3 +43196 chr3 HAVANA gene 17042742 17044192 311.0 - 0 ENSG00000226441.2 antisense PLCL2-AS1 2 OTTHUMG00000155466.2 +43197 chr3 HAVANA gene 16802651 17090594 5146.0 + 0 ENSG00000154822.17 protein_coding PLCL2 2 OTTHUMG00000155467.5 ncRNA_host +43198 chr3 HAVANA gene 17141015 17205165 1360.0 + 0 ENSG00000285731.1 lincRNA AC090644.1 2 OTTHUMG00000193136.1 +43199 chr3 HAVANA gene 17333126 17333431 306.0 + 0 ENSG00000231780.1 processed_pseudogene AC090960.1 1 OTTHUMG00000155543.1 pseudo_consens +43200 chr3 HAVANA gene 17465150 17465510 361.0 + 0 ENSG00000227309.1 processed_pseudogene AC140076.1 1 OTTHUMG00000155487.1 pseudo_consens +43201 chr3 ENSEMBL gene 17664963 17665025 63.0 + 0 ENSG00000271841.1 snRNA RNU7-10P 3 +43202 chr3 HAVANA gene 17706058 17706233 176.0 - 0 ENSG00000233133.1 unprocessed_pseudogene AC104451.1 2 OTTHUMG00000155489.1 overlapping_locus +43203 chr3 HAVANA gene 17871729 17872598 870.0 - 0 ENSG00000213383.2 processed_pseudogene AC104297.1 1 OTTHUMG00000155542.1 pseudo_consens,overlapping_locus +43204 chr3 HAVANA gene 17877455 17878169 715.0 - 0 ENSG00000214286.2 processed_pseudogene PDCL3P3 1 OTTHUMG00000155541.1 pseudo_consens,overlapping_locus +43205 chr3 HAVANA gene 17990023 17995544 458.0 + 0 ENSG00000226238.1 lincRNA AC132807.1 2 OTTHUMG00000155317.1 +43206 chr3 HAVANA gene 18013226 18041603 339.0 + 0 ENSG00000274840.4 lincRNA AC132807.2 2 OTTHUMG00000189276.1 +43207 chr3 HAVANA gene 18408680 18409635 956.0 - 0 ENSG00000272477.1 sense_intronic AC144521.1 2 OTTHUMG00000185577.1 overlapping_locus +43208 chr3 HAVANA gene 17157162 18444817 11269.0 - 0 ENSG00000131374.14 protein_coding TBC1D5 2 OTTHUMG00000155488.20 overlapping_locus +43209 chr3 HAVANA gene 18345387 18445588 13409.0 - 0 ENSG00000182568.16 protein_coding SATB1 1 OTTHUMG00000129890.10 overlapping_locus +43210 chr3 HAVANA gene 18538673 18539899 1227.0 + 0 ENSG00000236570.1 processed_pseudogene RAD23BP1 1 OTTHUMG00000155345.1 pseudo_consens,overlapping_locus +43211 chr3 HAVANA gene 18445024 18920401 13505.0 + 0 ENSG00000228956.8 processed_transcript SATB1-AS1 2 OTTHUMG00000155346.8 overlapping_locus +43212 chr3 ENSEMBL gene 18954943 18955049 107.0 - 0 ENSG00000251761.1 snRNA RNU6-138P 3 +43213 chr3 ENSEMBL gene 19314848 19314931 84.0 - 0 ENSG00000271898.1 miRNA MIR4791 3 +43214 chr3 HAVANA gene 19148454 19535646 6148.0 + 0 ENSG00000183960.8 protein_coding KCNH8 2 OTTHUMG00000129891.2 +43215 chr3 HAVANA gene 19940269 19943310 1928.0 - 0 ENSG00000232953.1 processed_pseudogene HSPA8P18 1 OTTHUMG00000150506.1 pseudo_consens,overlapping_locus +43216 chr3 HAVANA gene 19879472 19947025 4163.0 - 0 ENSG00000163576.17 protein_coding EFHB 1 OTTHUMG00000150505.3 overlapping_locus +43217 chr3 HAVANA gene 19947079 19985175 3785.0 + 0 ENSG00000144566.10 protein_coding RAB5A 1 OTTHUMG00000129889.5 +43218 chr3 ENSEMBL gene 19996803 19996925 123.0 + 0 ENSG00000201545.1 snRNA RNU4-85P 3 +43219 chr3 HAVANA gene 20007852 20008247 396.0 - 0 ENSG00000230697.1 processed_pseudogene SAP18P3 1 OTTHUMG00000155392.1 pseudo_consens,overlapping_locus +43220 chr3 HAVANA gene 19979961 20012330 2523.0 - 0 ENSG00000183977.13 protein_coding PP2D1 2 OTTHUMG00000155393.2 overlapping_locus +43221 chr3 HAVANA gene 20012452 20012606 155.0 + 0 ENSG00000229468.1 processed_pseudogene RPL39P18 1 OTTHUMG00000155391.1 pseudo_consens +43222 chr3 ENSEMBL gene 20137565 20137641 77.0 + 0 ENSG00000266745.1 miRNA MIR3135A 3 +43223 chr3 HAVANA gene 20040023 20154404 5634.0 + 0 ENSG00000114166.7 protein_coding KAT2B 2 OTTHUMG00000130481.3 ncRNA_host +43224 chr3 HAVANA gene 20160593 20186292 3828.0 - 0 ENSG00000129810.14 protein_coding SGO1 2 OTTHUMG00000130479.6 +43225 chr3 ENSEMBL gene 20268965 20269070 106.0 - 0 ENSG00000199577.1 snRNA RNU6-822P 3 +43226 chr3 HAVANA gene 20388249 20390562 2314.0 + 0 ENSG00000261734.1 lincRNA AC116096.1 2 OTTHUMG00000175701.1 +43227 chr3 ENSEMBL gene 20507644 20507756 113.0 - 0 ENSG00000206807.1 snRNA RNU6-815P 3 +43228 chr3 HAVANA gene 20174244 21145967 6571.0 + 0 ENSG00000231304.2 processed_transcript SGO1-AS1 2 OTTHUMG00000155532.2 +43229 chr3 HAVANA gene 21006730 21226305 2118.0 - 0 ENSG00000282987.1 lincRNA AC099753.1 2 OTTHUMG00000191596.1 +43230 chr3 HAVANA gene 21405737 21406508 772.0 + 0 ENSG00000236380.5 processed_pseudogene VENTXP7 1 OTTHUMG00000155442.2 pseudo_consens +43231 chr3 HAVANA gene 21542816 21579959 705.0 + 0 ENSG00000225542.1 antisense ZNF385D-AS1 1 OTTHUMG00000155559.1 +43232 chr3 HAVANA gene 21942566 21979828 648.0 + 0 ENSG00000223351.5 lincRNA ZNF385D-AS2 2 OTTHUMG00000155585.2 +43233 chr3 HAVANA gene 21412222 22373321 13621.0 - 0 ENSG00000151789.11 protein_coding ZNF385D 1 OTTHUMG00000130484.11 +43234 chr3 HAVANA gene 22381819 22382929 1111.0 + 0 ENSG00000132967.9 transcribed_processed_pseudogene HMGB1P5 2 OTTHUMG00000155591.1 +43235 chr3 HAVANA gene 22670201 22670711 418.0 - 0 ENSG00000234723.1 unprocessed_pseudogene AC092421.1 2 OTTHUMG00000155593.1 +43236 chr3 HAVANA gene 22811390 22812047 605.0 - 0 ENSG00000271235.1 processed_pseudogene AC114477.1 1 OTTHUMG00000184399.1 pseudo_consens +43237 chr3 HAVANA gene 22904135 22905151 644.0 + 0 ENSG00000226183.1 processed_pseudogene RANP7 1 OTTHUMG00000155606.1 pseudo_consens +43238 chr3 HAVANA gene 22989823 22991582 1760.0 + 0 ENSG00000231915.2 unprocessed_pseudogene SALL4P5 2 OTTHUMG00000155607.1 +43239 chr3 HAVANA gene 23134372 23134824 453.0 + 0 ENSG00000215016.2 processed_pseudogene RPL24P7 1 OTTHUMG00000155609.1 pseudo_consens +43240 chr3 HAVANA gene 23195070 23202578 532.0 - 0 ENSG00000233153.5 antisense UBE2E2-AS1 2 OTTHUMG00000155608.1 +43241 chr3 ENSEMBL gene 23273807 23273910 104.0 + 0 ENSG00000206728.1 misc_RNA RF00019 3 +43242 chr3 HAVANA gene 23389661 23389909 249.0 - 0 ENSG00000228171.1 unprocessed_pseudogene AC121251.1 1 OTTHUMG00000155611.1 pseudo_consens +43243 chr3 HAVANA gene 23203020 23591793 3274.0 + 0 ENSG00000182247.9 protein_coding UBE2E2 2 OTTHUMG00000130482.6 ncRNA_host +43244 chr3 ENSEMBL gene 23613661 23613759 99.0 - 0 ENSG00000252562.1 snRNA RNU6-922P 3 +43245 chr3 ENSEMBL gene 23641489 23641592 104.0 - 0 ENSG00000212269.1 snRNA RNU6-788P 3 +43246 chr3 HAVANA gene 23804024 23806905 778.0 - 0 ENSG00000223791.1 antisense UBE2E1-AS1 2 OTTHUMG00000155580.1 +43247 chr3 HAVANA gene 23878981 23879498 518.0 - 0 ENSG00000231395.1 processed_pseudogene ARL4AP4 1 OTTHUMG00000155579.1 pseudo_consens +43248 chr3 HAVANA gene 23805903 23891316 3074.0 + 0 ENSG00000170142.11 protein_coding UBE2E1 1 OTTHUMG00000130483.8 +43249 chr3 HAVANA gene 23916545 23924374 7222.0 + 0 ENSG00000174748.20 protein_coding RPL15 1 OTTHUMG00000130485.10 +43250 chr3 HAVANA gene 23891660 23946591 3473.0 - 0 ENSG00000197885.10 protein_coding NKIRAS1 2 OTTHUMG00000155605.3 +43251 chr3 HAVANA gene 23945260 23980618 5820.0 + 0 ENSG00000174738.12 protein_coding NR1D2 2 OTTHUMG00000155659.5 +43252 chr3 HAVANA gene 24096512 24097360 849.0 - 0 ENSG00000242109.1 transcribed_processed_pseudogene NPM1P23 1 OTTHUMG00000155663.1 pseudo_consens,overlapping_locus +43253 chr3 HAVANA gene 24096269 24103238 3446.0 - 0 ENSG00000224074.3 lincRNA LINC00691 2 OTTHUMG00000155662.1 overlapping_locus +43254 chr3 HAVANA gene 24430748 24431107 360.0 + 0 ENSG00000229756.1 processed_pseudogene RPL31P20 1 OTTHUMG00000155681.2 pseudo_consens +43255 chr3 HAVANA gene 24455136 24459434 1754.0 - 0 ENSG00000224822.1 sense_intronic THRB-IT1 2 OTTHUMG00000155680.1 overlapping_locus +43256 chr3 HAVANA gene 24117153 24495756 10968.0 - 0 ENSG00000151090.18 protein_coding THRB 1 OTTHUMG00000130478.9 overlapping_locus +43257 chr3 HAVANA gene 24496272 24499580 809.0 - 0 ENSG00000272554.1 lincRNA AC012087.1 2 OTTHUMG00000186304.1 +43258 chr3 ENSEMBL gene 24521362 24521435 74.0 - 0 ENSG00000265028.1 miRNA MIR4792 3 +43259 chr3 HAVANA gene 24555834 24556459 626.0 + 0 ENSG00000233544.1 processed_pseudogene EIF3KP2 1 OTTHUMG00000155682.1 pseudo_consens +43260 chr3 HAVANA gene 24494087 24681711 6386.0 + 0 ENSG00000228791.7 processed_transcript THRB-AS1 1 OTTHUMG00000155683.6 +43261 chr3 ENSEMBL gene 25020166 25020463 298.0 - 0 ENSG00000244404.3 misc_RNA RN7SL216P 3 +43262 chr3 ENSEMBL gene 25025007 25025126 120.0 + 0 ENSG00000201713.1 rRNA_pseudogene RNA5SP125 3 +43263 chr3 HAVANA gene 24687919 25174305 584.0 + 0 ENSG00000237838.1 lincRNA AC092422.1 2 OTTHUMG00000155664.2 +43264 chr3 HAVANA gene 25324174 25324659 486.0 + 0 ENSG00000213877.3 processed_pseudogene CFL1P7 1 OTTHUMG00000155603.1 pseudo_consens,overlapping_locus +43265 chr3 ENSEMBL gene 25352284 25352392 109.0 - 0 ENSG00000201962.1 rRNA_pseudogene RNA5SP126 3 +43266 chr3 HAVANA gene 25441164 25441502 339.0 - 0 ENSG00000229421.1 processed_pseudogene AC133141.1 1 OTTHUMG00000155597.2 pseudo_consens +43267 chr3 ENSEMBL gene 25555543 25555606 64.0 - 0 ENSG00000272166.1 snoRNA RF01161 3 +43268 chr3 HAVANA gene 25174332 25597932 3697.0 + 0 ENSG00000077092.18 protein_coding RARB 1 OTTHUMG00000130480.6 overlapping_locus +43269 chr3 ENSEMBL gene 25618132 25618312 181.0 - 0 ENSG00000275227.1 misc_RNA RF02271 3 +43270 chr3 HAVANA gene 25597905 25664907 6044.0 - 0 ENSG00000077097.15 protein_coding TOP2B 2 OTTHUMG00000155596.4 ncRNA_host +43271 chr3 ENSEMBL gene 25664873 25664939 67.0 - 0 ENSG00000283971.1 miRNA MIR4442 3 +43272 chr3 HAVANA gene 25686896 25687123 228.0 + 0 ENSG00000238225.1 processed_pseudogene CRIP1P2 1 OTTHUMG00000155595.1 pseudo_consens +43273 chr3 HAVANA gene 25749488 25749896 409.0 + 0 ENSG00000213872.3 processed_pseudogene AC092798.1 1 OTTHUMG00000155602.2 pseudo_consens +43274 chr3 HAVANA gene 25754925 25755670 746.0 + 0 ENSG00000213871.3 processed_pseudogene TAF9BP1 1 OTTHUMG00000155604.1 pseudo_consens +43275 chr3 HAVANA gene 25718944 25790039 8326.0 - 0 ENSG00000151092.16 protein_coding NGLY1 1 OTTHUMG00000155600.5 +43276 chr3 HAVANA gene 25782917 25794534 2486.0 + 0 ENSG00000151093.7 protein_coding OXSM 1 OTTHUMG00000130477.6 +43277 chr3 HAVANA gene 25858533 25873700 934.0 - 0 ENSG00000230891.6 processed_transcript LINC00692 2 OTTHUMG00000155601.1 +43278 chr3 HAVANA gene 26015669 26016369 701.0 + 0 ENSG00000234158.1 processed_pseudogene RPEP2 1 OTTHUMG00000155599.1 pseudo_consens +43279 chr3 HAVANA gene 26216322 26216877 556.0 + 0 ENSG00000237603.1 processed_pseudogene HMGB3P12 1 OTTHUMG00000155598.1 pseudo_consens +43280 chr3 HAVANA gene 26346681 26347638 958.0 - 0 ENSG00000230465.1 processed_pseudogene VENTXP4 1 OTTHUMG00000155613.1 pseudo_consens +43281 chr3 HAVANA gene 26619330 26622690 454.0 - 0 ENSG00000225386.1 lincRNA AC099754.1 2 OTTHUMG00000155650.1 +43282 chr3 HAVANA gene 26622806 26717537 8920.0 + 0 ENSG00000179796.12 protein_coding LRRC3B 2 OTTHUMG00000130572.8 +43283 chr3 HAVANA gene 27214816 27215018 203.0 - 0 ENSG00000224237.1 processed_pseudogene MINOS1P3 1 OTTHUMG00000155687.1 pseudo_consens,overlapping_locus +43284 chr3 ENSEMBL gene 27265580 27265683 104.0 - 0 ENSG00000207251.1 snRNA RNU6-342P 3 +43285 chr3 HAVANA gene 27110085 27369460 9582.0 - 0 ENSG00000163491.16 protein_coding NEK10 1 OTTHUMG00000130571.14 ncRNA_host,overlapping_locus +43286 chr3 HAVANA gene 27462506 27462816 311.0 + 0 ENSG00000227523.1 processed_pseudogene RPS20P15 1 OTTHUMG00000155689.1 pseudo_consens +43287 chr3 HAVANA gene 27372721 27484420 9616.0 - 0 ENSG00000033867.16 protein_coding SLC4A7 2 OTTHUMG00000155679.15 +43288 chr3 HAVANA gene 27486247 27486617 371.0 + 0 ENSG00000230807.1 processed_pseudogene AC099535.1 1 OTTHUMG00000155688.1 pseudo_consens +43289 chr3 ENSEMBL gene 27513871 27514032 162.0 + 0 ENSG00000201033.1 snRNA RNU1-96P 3 +43290 chr3 HAVANA gene 27525353 27525394 42.0 + 0 ENSG00000232167.1 processed_pseudogene AC137675.1 2 OTTHUMG00000155690.1 +43291 chr3 ENSEMBL gene 27547757 27547858 102.0 - 0 ENSG00000238912.1 misc_RNA RF00019 3 +43292 chr3 HAVANA gene 27624202 27624456 255.0 - 0 ENSG00000223968.1 processed_pseudogene AC098614.2 1 OTTHUMG00000155633.1 pseudo_consens +43293 chr3 HAVANA gene 27632976 27635427 2452.0 + 0 ENSG00000213846.5 transcribed_processed_pseudogene AC098614.1 1 OTTHUMG00000155631.2 pseudo_consens +43294 chr3 HAVANA gene 27638315 27638776 462.0 + 0 ENSG00000271943.1 lincRNA AC098614.4 2 OTTHUMG00000185460.1 +43295 chr3 HAVANA gene 27703129 27703568 440.0 - 0 ENSG00000232766.1 processed_pseudogene AC098614.3 1 OTTHUMG00000155632.1 pseudo_consens +43296 chr3 HAVANA gene 27712910 27714005 1096.0 + 0 ENSG00000272282.1 lincRNA LINC02084 2 OTTHUMG00000185461.1 +43297 chr3 HAVANA gene 27715949 27722711 3656.0 - 0 ENSG00000163508.12 protein_coding EOMES 2 OTTHUMG00000130570.3 +43298 chr3 HAVANA gene 27830888 27834136 2833.0 - 0 ENSG00000229243.1 lincRNA LINC01981 2 OTTHUMG00000155652.1 +43299 chr3 HAVANA gene 27797563 27931579 2505.0 + 0 ENSG00000225548.6 lincRNA LINC01980 2 OTTHUMG00000155653.2 +43300 chr3 HAVANA gene 27916774 28059268 2798.0 - 0 ENSG00000235493.2 lincRNA LINC01967 2 OTTHUMG00000155651.2 +43301 chr3 HAVANA gene 28241584 28325142 10536.0 + 0 ENSG00000187118.13 protein_coding CMC1 2 OTTHUMG00000155660.4 +43302 chr3 HAVANA gene 28315003 28349127 6349.0 - 0 ENSG00000163512.13 protein_coding AZI2 1 OTTHUMG00000130573.9 +43303 chr3 HAVANA gene 28427963 28428444 482.0 - 0 ENSG00000234048.1 processed_pseudogene FAM96AP1 1 OTTHUMG00000155722.1 pseudo_consens +43304 chr3 HAVANA gene 28447725 28448073 349.0 + 0 ENSG00000230480.1 processed_pseudogene AC093142.1 1 OTTHUMG00000155706.1 pseudo_consens,overlapping_locus +43305 chr3 HAVANA gene 28349146 28538122 2895.0 + 0 ENSG00000206559.7 protein_coding ZCWPW2 1 OTTHUMG00000155705.3 overlapping_locus +43306 chr3 HAVANA gene 29087396 29088599 1204.0 + 0 ENSG00000215004.3 processed_pseudogene MESTP4 1 OTTHUMG00000155719.1 pseudo_consens +43307 chr3 HAVANA gene 29264194 29290726 787.0 - 0 ENSG00000235904.2 antisense RBMS3-AS3 2 OTTHUMG00000155693.2 +43308 chr3 HAVANA gene 29390848 29391218 371.0 + 0 ENSG00000226216.1 processed_pseudogene RPS12P5 1 OTTHUMG00000155733.1 pseudo_consens,overlapping_locus +43309 chr3 HAVANA gene 29526251 29642809 2303.0 - 0 ENSG00000203506.5 antisense RBMS3-AS2 2 OTTHUMG00000155692.3 +43310 chr3 HAVANA gene 28349178 29767537 3535.0 + 0 ENSG00000283563.1 protein_coding AC098650.1 2 OTTHUMG00000191752.1 overlapping_locus +43311 chr3 HAVANA gene 29797652 29797825 174.0 - 0 ENSG00000227795.1 processed_pseudogene MTND4LP9 2 OTTHUMG00000155734.1 +43312 chr3 HAVANA gene 29926811 29934156 554.0 - 0 ENSG00000235593.1 antisense RBMS3-AS1 2 OTTHUMG00000155691.1 +43313 chr3 HAVANA gene 28574791 30010391 18339.0 + 0 ENSG00000144642.21 protein_coding RBMS3 2 OTTHUMG00000155699.8 overlapping_locus +43314 chr3 ENSEMBL gene 30304321 30304536 216.0 - 0 ENSG00000281710.1 snoRNA RF00012 3 +43315 chr3 ENSEMBL gene 30304320 30304536 217.0 - 0 ENSG00000199927.2 snoRNA RF01848 3 +43316 chr3 HAVANA gene 30524990 30526213 517.0 - 0 ENSG00000227549.1 lincRNA AC116035.1 2 OTTHUMG00000155735.1 +43317 chr3 HAVANA gene 30524745 30527185 436.0 + 0 ENSG00000227260.1 lincRNA LINC01985 1 OTTHUMG00000155731.1 +43318 chr3 HAVANA gene 30626423 30626797 375.0 - 0 ENSG00000224618.1 processed_pseudogene AC096921.1 2 OTTHUMG00000155732.1 +43319 chr3 HAVANA gene 30606502 30694142 4704.0 + 0 ENSG00000163513.17 protein_coding TGFBR2 2 OTTHUMG00000130569.3 +43320 chr3 HAVANA gene 30697661 30699576 1916.0 + 0 ENSG00000261468.1 sense_overlapping AC096921.2 2 OTTHUMG00000175700.1 +43321 chr3 HAVANA gene 30726200 30894765 7330.0 - 0 ENSG00000144644.14 protein_coding GADL1 2 OTTHUMG00000130621.3 +43322 chr3 ENSEMBL gene 31161704 31161787 84.0 - 0 ENSG00000265376.1 miRNA MIR466 3 +43323 chr3 HAVANA gene 31181751 31182650 900.0 - 0 ENSG00000213854.3 processed_pseudogene CNN2P6 1 OTTHUMG00000155812.1 pseudo_consens +43324 chr3 ENSEMBL gene 31228715 31228847 133.0 + 0 ENSG00000222983.1 rRNA_pseudogene RNA5SP127 3 +43325 chr3 HAVANA gene 31269007 31269406 400.0 + 0 ENSG00000230111.1 processed_pseudogene AC115283.1 1 OTTHUMG00000155813.1 pseudo_consens +43326 chr3 HAVANA gene 31452832 31455894 2786.0 + 0 ENSG00000227339.1 processed_pseudogene THRAP3P1 1 OTTHUMG00000155810.1 pseudo_consens +43327 chr3 HAVANA gene 31532638 31637622 5012.0 + 0 ENSG00000163527.9 protein_coding STT3B 2 OTTHUMG00000130673.4 +43328 chr3 HAVANA gene 31704058 31721652 2307.0 + 0 ENSG00000232490.6 antisense OSBPL10-AS1 2 OTTHUMG00000155828.2 +43329 chr3 HAVANA gene 31794470 31796175 1386.0 + 0 ENSG00000223965.2 processed_pseudogene ZNF587P1 2 OTTHUMG00000155827.1 +43330 chr3 HAVANA gene 31981771 31991628 3263.0 + 0 ENSG00000197385.5 protein_coding ZNF860 2 OTTHUMG00000155838.1 +43331 chr3 HAVANA gene 32030196 32030678 483.0 + 0 ENSG00000235670.1 processed_pseudogene RPL21P40 1 OTTHUMG00000155839.1 pseudo_consens +43332 chr3 ENSEMBL gene 32037526 32037653 128.0 + 0 ENSG00000201701.1 snoRNA RF00402 3 +43333 chr3 ENSEMBL gene 32045873 32045979 107.0 + 0 ENSG00000252398.1 misc_RNA RF00019 3 +43334 chr3 HAVANA gene 32063974 32066611 834.0 - 0 ENSG00000251590.1 unprocessed_pseudogene NIFKP7 1 OTTHUMG00000155837.1 pseudo_consens,overlapping_locus +43335 chr3 HAVANA gene 31657890 32077580 11976.0 - 0 ENSG00000144645.13 protein_coding OSBPL10 2 OTTHUMG00000130672.10 overlapping_locus +43336 chr3 HAVANA gene 32151083 32151895 472.0 - 0 ENSG00000236732.1 unprocessed_pseudogene AC094019.1 1 OTTHUMG00000155845.1 pseudo_consens +43337 chr3 HAVANA gene 32105689 32168713 4802.0 + 0 ENSG00000152642.10 protein_coding GPD1L 2 OTTHUMG00000155846.3 +43338 chr3 HAVANA gene 32190747 32191627 881.0 + 0 ENSG00000237433.1 processed_pseudogene RPSAP11 1 OTTHUMG00000155857.1 pseudo_consens +43339 chr3 HAVANA gene 32236688 32238578 1891.0 - 0 ENSG00000261572.1 sense_intronic AC097639.1 2 OTTHUMG00000175702.1 +43340 chr3 HAVANA gene 32243847 32244018 172.0 - 0 ENSG00000270377.1 processed_pseudogene AC097639.2 2 OTTHUMG00000184394.1 +43341 chr3 HAVANA gene 32258940 32260230 1291.0 + 0 ENSG00000234737.1 processed_pseudogene KRT18P15 1 OTTHUMG00000155858.1 pseudo_consens,overlapping_locus +43342 chr3 HAVANA gene 32238679 32370325 1174.0 + 0 ENSG00000170293.8 protein_coding CMTM8 2 OTTHUMG00000130753.2 overlapping_locus +43343 chr3 HAVANA gene 32391671 32483067 3751.0 + 0 ENSG00000153551.13 protein_coding CMTM7 1 OTTHUMG00000155869.3 +43344 chr3 HAVANA gene 32481312 32503408 4413.0 - 0 ENSG00000091317.7 protein_coding CMTM6 2 OTTHUMG00000130747.2 +43345 chr3 ENSEMBL gene 32506283 32506389 107.0 - 0 ENSG00000276147.1 miRNA MIR548AY 3 +43346 chr3 HAVANA gene 32507955 32508325 371.0 + 0 ENSG00000213849.3 processed_pseudogene AC104306.1 1 OTTHUMG00000155877.1 pseudo_consens +43347 chr3 HAVANA gene 32525971 32570874 6132.0 - 0 ENSG00000144635.8 protein_coding DYNC1LI1 1 OTTHUMG00000130750.3 +43348 chr3 HAVANA gene 32592972 32593312 341.0 - 0 ENSG00000226955.1 processed_pseudogene AC104306.2 1 OTTHUMG00000155901.1 pseudo_consens +43349 chr3 HAVANA gene 32620903 32621902 1000.0 - 0 ENSG00000231552.1 processed_pseudogene IGBP1P3 1 OTTHUMG00000155898.1 pseudo_consens +43350 chr3 HAVANA gene 32635222 32635554 333.0 - 0 ENSG00000237676.1 processed_pseudogene RPL30P4 1 OTTHUMG00000155900.1 pseudo_consens +43351 chr3 HAVANA gene 32730635 32737454 466.0 - 0 ENSG00000251224.1 antisense CNOT10-AS1 2 OTTHUMG00000162550.1 +43352 chr3 HAVANA gene 32752910 32753901 992.0 + 0 ENSG00000213842.2 processed_pseudogene SUGT1P2 1 OTTHUMG00000155904.1 pseudo_consens,overlapping_locus +43353 chr3 HAVANA gene 32685145 32773875 4846.0 + 0 ENSG00000182973.18 protein_coding CNOT10 1 OTTHUMG00000130748.6 overlapping_locus +43354 chr3 HAVANA gene 32785646 32786116 471.0 + 0 ENSG00000227337.1 processed_pseudogene RPL23AP43 1 OTTHUMG00000155776.1 pseudo_consens +43355 chr3 HAVANA gene 32818018 32897826 8685.0 + 0 ENSG00000206557.5 protein_coding TRIM71 2 OTTHUMG00000155778.3 +43356 chr3 HAVANA gene 32951574 32956349 3095.0 + 0 ENSG00000183813.6 protein_coding CCR4 2 OTTHUMG00000130752.2 +43357 chr3 HAVANA gene 33033863 33034810 948.0 + 0 ENSG00000223899.1 processed_pseudogene SEC13P1 1 OTTHUMG00000155780.1 pseudo_consens +43358 chr3 HAVANA gene 33077204 33077491 288.0 + 0 ENSG00000235424.1 processed_pseudogene SUMO2P10 1 OTTHUMG00000155777.1 pseudo_consens +43359 chr3 HAVANA gene 33090421 33096801 3966.0 - 0 ENSG00000188167.8 protein_coding TMPPE 1 OTTHUMG00000155779.1 overlapping_locus +43360 chr3 HAVANA gene 32996608 33097230 4364.0 - 0 ENSG00000170266.15 protein_coding GLB1 1 OTTHUMG00000155781.7 overlapping_locus +43361 chr3 ENSEMBL gene 33103008 33103306 299.0 + 0 ENSG00000275090.1 misc_RNA RN7SL296P 3 +43362 chr3 HAVANA gene 33144104 33147721 305.0 - 0 ENSG00000272149.1 antisense AC112211.1 2 OTTHUMG00000185462.1 +43363 chr3 HAVANA gene 33113979 33147773 6695.0 + 0 ENSG00000170275.14 protein_coding CRTAP 2 OTTHUMG00000130746.3 +43364 chr3 HAVANA gene 33190233 33190328 96.0 - 0 ENSG00000230119.1 processed_pseudogene AC123900.1 2 OTTHUMG00000155833.1 overlapping_locus +43365 chr3 HAVANA gene 33150042 33219215 5008.0 - 0 ENSG00000173705.8 protein_coding SUSD5 2 OTTHUMG00000155829.3 overlapping_locus +43366 chr3 HAVANA gene 33277025 33403662 7664.0 + 0 ENSG00000153558.15 protein_coding FBXL2 2 OTTHUMG00000130745.7 +43367 chr3 ENSEMBL gene 33414150 33414211 62.0 + 0 ENSG00000252700.1 snRNA RNU7-110P 3 +43368 chr3 HAVANA gene 33388336 33441371 9760.0 - 0 ENSG00000153560.11 protein_coding UBP1 2 OTTHUMG00000130749.5 +43369 chr3 ENSEMBL gene 33491983 33492098 116.0 - 0 ENSG00000202175.1 rRNA_pseudogene RNA5SP128 3 +43370 chr3 HAVANA gene 33554636 33554859 224.0 + 0 ENSG00000238008.1 processed_pseudogene COX6CP10 1 OTTHUMG00000155866.1 pseudo_consens +43371 chr3 HAVANA gene 33496245 33718356 15211.0 - 0 ENSG00000163539.16 protein_coding CLASP2 1 OTTHUMG00000156489.13 +43372 chr3 HAVANA gene 33727250 33727604 355.0 - 0 ENSG00000228112.1 processed_pseudogene AC112220.1 1 OTTHUMG00000155867.1 pseudo_consens +43373 chr3 HAVANA gene 33771963 33772295 333.0 + 0 ENSG00000227707.1 processed_pseudogene SDAD1P3 1 OTTHUMG00000155868.1 pseudo_consens +43374 chr3 HAVANA gene 33793644 33798539 4524.0 - 0 ENSG00000271643.2 bidirectional_promoter_lncRNA AC112220.2 2 OTTHUMG00000185052.3 +43375 chr3 HAVANA gene 33798352 33869707 9038.0 + 0 ENSG00000170248.14 protein_coding PDCD6IP 2 OTTHUMG00000130751.9 +43376 chr3 HAVANA gene 34203244 34268811 555.0 + 0 ENSG00000236452.1 lincRNA AC123023.1 2 OTTHUMG00000155764.1 overlapping_locus +43377 chr3 HAVANA gene 34524818 34543880 574.0 - 0 ENSG00000227498.2 lincRNA AC018359.1 2 OTTHUMG00000155766.2 +43378 chr3 HAVANA gene 34159334 34562877 1135.0 + 0 ENSG00000226320.5 lincRNA LINC01811 2 OTTHUMG00000155767.2 overlapping_locus +43379 chr3 HAVANA gene 34872641 34873854 1214.0 + 0 ENSG00000235534.1 processed_pseudogene FECHP1 1 OTTHUMG00000155765.1 pseudo_consens +43380 chr3 HAVANA gene 35215705 35217149 1445.0 - 0 ENSG00000228767.1 processed_pseudogene KRT8P18 1 OTTHUMG00000155763.1 pseudo_consens +43381 chr3 ENSEMBL gene 35256840 35256946 107.0 - 0 ENSG00000212442.1 snRNA RNU6-243P 3 +43382 chr3 HAVANA gene 35650197 35651961 542.0 - 0 ENSG00000230830.1 antisense ARPP21-AS1 2 OTTHUMG00000156606.1 +43383 chr3 ENSEMBL gene 35744476 35744559 84.0 + 0 ENSG00000207625.1 miRNA MIR128-2 3 +43384 chr3 HAVANA gene 35638945 35794496 10092.0 + 0 ENSG00000172995.16 protein_coding ARPP21 2 OTTHUMG00000130795.16 ncRNA_host +43385 chr3 HAVANA gene 35871866 35872198 333.0 + 0 ENSG00000226489.1 processed_pseudogene AC104308.1 1 OTTHUMG00000155792.1 pseudo_consens +43386 chr3 HAVANA gene 36169767 36170448 682.0 - 0 ENSG00000236158.1 processed_pseudogene RFC3P1 1 OTTHUMG00000155793.1 pseudo_consens +43387 chr3 HAVANA gene 36380344 36548007 4396.0 + 0 ENSG00000144681.10 protein_coding STAC 2 OTTHUMG00000130798.13 +43388 chr3 HAVANA gene 36616006 36637457 1451.0 - 0 ENSG00000231382.1 unprocessed_pseudogene NBPF21P 1 OTTHUMG00000155806.2 pseudo_consens +43389 chr3 ENSEMBL gene 36685040 36685369 330.0 + 0 ENSG00000201315.1 misc_RNA RN7SKP227 3 +43390 chr3 HAVANA gene 36712422 36764349 5574.0 - 0 ENSG00000163673.7 protein_coding DCLK3 2 OTTHUMG00000155805.3 +43391 chr3 HAVANA gene 36767117 36784167 2179.0 - 0 ENSG00000230067.3 transcribed_processed_pseudogene HSPD1P6 1 OTTHUMG00000155803.1 pseudo_consens +43392 chr3 HAVANA gene 36819276 36822498 1344.0 - 0 ENSG00000279727.1 lincRNA LINC02033 2 OTTHUMG00000189233.1 +43393 chr3 HAVANA gene 36823151 36825158 2008.0 - 0 ENSG00000281100.1 TEC AC105749.1 2 OTTHUMG00000189723.1 +43394 chr3 HAVANA gene 36880184 36880729 546.0 - 0 ENSG00000234073.1 processed_pseudogene AC011816.1 1 OTTHUMG00000155851.1 pseudo_consens,overlapping_locus +43395 chr3 HAVANA gene 36826820 36945098 12174.0 - 0 ENSG00000168016.14 protein_coding TRANK1 1 OTTHUMG00000155848.6 +43396 chr3 ENSEMBL gene 36968191 36968316 126.0 - 0 ENSG00000210181.1 snRNA RNU6ATAC4P 3 +43397 chr3 HAVANA gene 36973117 36973672 556.0 - 0 ENSG00000272334.1 lincRNA AC011816.2 2 OTTHUMG00000185481.1 +43398 chr3 HAVANA gene 36976316 36976840 525.0 + 0 ENSG00000236165.1 processed_pseudogene PRADC1P1 1 OTTHUMG00000155852.1 pseudo_consens +43399 chr3 HAVANA gene 36985043 36993168 8126.0 - 0 ENSG00000178567.7 protein_coding EPM2AIP1 2 OTTHUMG00000185486.2 +43400 chr3 HAVANA gene 37016523 37017014 492.0 - 0 ENSG00000224858.5 processed_pseudogene RPL29P11 1 OTTHUMG00000155865.1 pseudo_consens +43401 chr3 HAVANA gene 36993332 37050918 3532.0 + 0 ENSG00000076242.14 protein_coding MLH1 1 OTTHUMG00000130797.9 +43402 chr3 ENSEMBL gene 37093133 37093234 102.0 - 0 ENSG00000206645.1 misc_RNA RF00019 3 +43403 chr3 HAVANA gene 37134658 37135102 445.0 + 0 ENSG00000225558.1 processed_pseudogene UBE2D3P2 1 OTTHUMG00000155909.1 pseudo_consens +43404 chr3 ENSEMBL gene 37140327 37140430 104.0 + 0 ENSG00000199594.1 snRNA RNU6-1301P 3 +43405 chr3 HAVANA gene 37143512 37143958 447.0 - 0 ENSG00000224080.1 processed_pseudogene UBE2FP1 1 OTTHUMG00000155910.1 pseudo_consens,overlapping_locus +43406 chr3 HAVANA gene 37182107 37182734 628.0 + 0 ENSG00000271993.1 antisense AC126118.1 2 OTTHUMG00000185491.1 +43407 chr3 HAVANA gene 37052656 37183689 10644.0 - 0 ENSG00000093167.17 protein_coding LRRFIP2 1 OTTHUMG00000130796.33 ncRNA_host,overlapping_locus +43408 chr3 HAVANA gene 37196204 37196666 463.0 + 0 ENSG00000231449.1 processed_pseudogene AC097359.1 1 OTTHUMG00000155908.2 pseudo_consens +43409 chr3 HAVANA gene 37216779 37217988 1210.0 + 0 ENSG00000271653.1 lincRNA AC097359.3 2 OTTHUMG00000185096.1 +43410 chr3 HAVANA gene 37241789 37244177 2389.0 - 0 ENSG00000270194.1 antisense AC097359.2 2 OTTHUMG00000185097.1 +43411 chr3 HAVANA gene 37275693 37276598 906.0 + 0 ENSG00000230409.3 processed_pseudogene TCEA1P2 2 OTTHUMG00000186574.1 overlapping_locus +43412 chr3 ENSEMBL gene 37341649 37341766 118.0 + 0 ENSG00000222208.1 rRNA_pseudogene RNA5SP129 3 +43413 chr3 HAVANA gene 37243177 37366751 10737.0 + 0 ENSG00000144674.16 protein_coding GOLGA4 2 OTTHUMG00000130799.7 overlapping_locus +43414 chr3 HAVANA gene 37386269 37435497 3072.0 + 0 ENSG00000198590.11 processed_transcript C3orf35 2 OTTHUMG00000155923.4 +43415 chr3 ENSEMBL gene 37573151 37573213 63.0 - 0 ENSG00000239105.1 snRNA RNU7-73P 3 +43416 chr3 HAVANA gene 37748110 37748900 791.0 + 0 ENSG00000235482.1 processed_pseudogene RPL21P135 1 OTTHUMG00000155925.1 pseudo_consens,overlapping_locus +43417 chr3 HAVANA gene 37789921 37790445 525.0 - 0 ENSG00000236411.1 processed_pseudogene NDUFAF4P3 1 OTTHUMG00000155922.1 pseudo_consens,overlapping_locus +43418 chr3 HAVANA gene 37452115 37823514 8277.0 + 0 ENSG00000144668.11 protein_coding ITGA9 2 OTTHUMG00000130815.4 overlapping_locus +43419 chr3 HAVANA gene 37745432 37861780 6651.0 - 0 ENSG00000235257.8 processed_transcript ITGA9-AS1 2 OTTHUMG00000155924.5 overlapping_locus +43420 chr3 ENSEMBL gene 37969404 37969480 77.0 + 0 ENSG00000199075.1 miRNA MIR26A1 3 +43421 chr3 HAVANA gene 37861960 37984469 5796.0 + 0 ENSG00000144677.14 protein_coding CTDSPL 1 OTTHUMG00000155942.3 ncRNA_host +43422 chr3 HAVANA gene 37988059 38007188 6476.0 + 0 ENSG00000136059.14 protein_coding VILL 2 OTTHUMG00000130814.8 +43423 chr3 ENSEMBL gene 38014568 38014669 102.0 + 0 ENSG00000200579.1 misc_RNA RF00019 3 +43424 chr3 HAVANA gene 38007496 38029762 4314.0 - 0 ENSG00000187091.13 protein_coding PLCD1 1 OTTHUMG00000130813.6 +43425 chr3 HAVANA gene 38051759 38052395 637.0 + 0 ENSG00000231668.2 processed_pseudogene PPP2R2DP1 1 OTTHUMG00000155979.1 pseudo_consens,overlapping_locus +43426 chr3 HAVANA gene 38039205 38124025 8338.0 + 0 ENSG00000008226.19 protein_coding DLEC1 2 OTTHUMG00000131085.18 overlapping_locus +43427 chr3 ENSEMBL gene 38125292 38125394 103.0 - 0 ENSG00000201965.1 misc_RNA RF00019 3 +43428 chr3 HAVANA gene 38103129 38137242 7106.0 - 0 ENSG00000060971.17 protein_coding ACAA1 2 OTTHUMG00000131087.6 ncRNA_host +43429 chr3 HAVANA gene 38138478 38143022 3989.0 + 0 ENSG00000172936.13 protein_coding MYD88 1 OTTHUMG00000131083.6 +43430 chr3 HAVANA gene 38165089 38255488 6075.0 + 0 ENSG00000172939.8 protein_coding OXSR1 1 OTTHUMG00000131084.3 +43431 chr3 HAVANA gene 38270283 38270767 485.0 - 0 ENSG00000237982.1 processed_pseudogene AP006193.1 1 OTTHUMG00000156004.1 pseudo_consens +43432 chr3 HAVANA gene 38265812 38278757 2997.0 + 0 ENSG00000172940.12 protein_coding SLC22A13 2 OTTHUMG00000131086.6 +43433 chr3 ENSEMBL gene 38303773 38303879 107.0 - 0 ENSG00000199514.1 snRNA RNU6-235P 3 +43434 chr3 HAVANA gene 38282294 38318575 3659.0 + 0 ENSG00000144671.10 protein_coding SLC22A14 1 OTTHUMG00000131082.4 +43435 chr3 HAVANA gene 38325237 38329070 576.0 - 0 ENSG00000230123.1 unprocessed_pseudogene DLEC1P1 2 OTTHUMG00000156032.1 +43436 chr3 HAVANA gene 38346760 38421348 6318.0 + 0 ENSG00000093217.10 protein_coding XYLB 1 OTTHUMG00000131294.6 +43437 chr3 HAVANA gene 38451027 38454820 2517.0 - 0 ENSG00000229589.1 antisense ACVR2B-AS1 1 OTTHUMG00000156031.1 +43438 chr3 HAVANA gene 38453851 38493142 15744.0 + 0 ENSG00000114739.13 protein_coding ACVR2B 2 OTTHUMG00000131291.3 +43439 chr3 ENSEMBL gene 38505480 38505581 102.0 - 0 ENSG00000207512.1 misc_RNA RF00019 3 +43440 chr3 HAVANA gene 38515448 38515830 383.0 - 0 ENSG00000230683.1 processed_pseudogene DDTP1 1 OTTHUMG00000156076.1 pseudo_consens +43441 chr3 HAVANA gene 38526802 38527325 524.0 - 0 ENSG00000232439.1 processed_pseudogene RPL18AP7 1 OTTHUMG00000156165.1 pseudo_consens +43442 chr3 HAVANA gene 38496127 38542161 5223.0 + 0 ENSG00000157036.12 protein_coding EXOG 1 OTTHUMG00000131295.6 +43443 chr3 HAVANA gene 38548057 38649673 10017.0 - 0 ENSG00000183873.15 protein_coding SCN5A 1 OTTHUMG00000156166.5 +43444 chr3 HAVANA gene 38696807 38816217 6630.0 - 0 ENSG00000185313.7 protein_coding SCN10A 2 OTTHUMG00000048245.5 +43445 chr3 HAVANA gene 38823902 38825302 408.0 + 0 ENSG00000231243.1 antisense AC116038.1 1 OTTHUMG00000156164.1 +43446 chr3 HAVANA gene 38845769 38950561 7703.0 - 0 ENSG00000168356.11 protein_coding SCN11A 2 OTTHUMG00000048246.5 +43447 chr3 ENSEMBL gene 39025987 39026093 107.0 + 0 ENSG00000206708.1 snRNA RNU6-1227P 3 +43448 chr3 HAVANA gene 39051998 39096671 7488.0 + 0 ENSG00000114742.13 protein_coding WDR48 1 OTTHUMG00000155972.6 +43449 chr3 HAVANA gene 39096659 39108363 6256.0 - 0 ENSG00000114745.13 protein_coding GORASP1 1 OTTHUMG00000131292.5 +43450 chr3 ENSEMBL gene 39138206 39138266 61.0 + 0 ENSG00000284158.1 miRNA MIR6822 3 +43451 chr3 HAVANA gene 39107704 39138903 7677.0 + 0 ENSG00000168026.18 protein_coding TTC21A 2 OTTHUMG00000155973.2 ncRNA_host +43452 chr3 HAVANA gene 39141855 39154562 3214.0 - 0 ENSG00000144655.14 protein_coding CSRNP1 2 OTTHUMG00000131293.2 +43453 chr3 HAVANA gene 39152906 39154723 1818.0 + 0 ENSG00000283849.1 antisense AC092053.2 2 OTTHUMG00000191918.1 +43454 chr3 ENSEMBL gene 39161270 39161520 251.0 + 0 ENSG00000214305.4 misc_RNA RF00017 3 +43455 chr3 HAVANA gene 39148281 39172952 4975.0 + 0 ENSG00000284669.1 antisense AC092053.3 2 OTTHUMG00000191917.1 ncRNA_host +43456 chr3 HAVANA gene 39183210 39192596 6467.0 - 0 ENSG00000168334.8 protein_coding XIRP1 2 OTTHUMG00000131297.3 +43457 chr3 HAVANA gene 39214199 39214672 474.0 + 0 ENSG00000215034.4 processed_pseudogene DSTNP4 1 OTTHUMG00000156247.1 pseudo_consens +43458 chr3 HAVANA gene 39263494 39281735 3655.0 - 0 ENSG00000168329.13 protein_coding CX3CR1 2 OTTHUMG00000156249.3 +43459 chr3 HAVANA gene 39285985 39287920 1936.0 + 0 ENSG00000270367.1 processed_pseudogene AC092053.1 1 OTTHUMG00000184341.1 pseudo_consens +43460 chr3 HAVANA gene 39329706 39333511 1318.0 + 0 ENSG00000179934.6 protein_coding CCR8 2 OTTHUMG00000131290.2 +43461 chr3 HAVANA gene 39334979 39335939 961.0 + 0 ENSG00000228168.1 processed_pseudogene HNRNPA1P21 1 OTTHUMG00000156248.1 pseudo_consens +43462 chr3 HAVANA gene 39338129 39338879 476.0 - 0 ENSG00000238267.1 processed_pseudogene AC104850.1 1 OTTHUMG00000156246.1 pseudo_consens +43463 chr3 HAVANA gene 39358545 39359922 1378.0 + 0 ENSG00000223668.1 processed_pseudogene EEF1A1P24 1 OTTHUMG00000156250.1 pseudo_consens +43464 chr3 HAVANA gene 39383324 39397351 2708.0 + 0 ENSG00000144659.12 protein_coding SLC25A38 2 OTTHUMG00000131289.12 +43465 chr3 ENSEMBL gene 39408389 39408539 151.0 + 0 ENSG00000206760.1 snoRNA SNORA6 3 +43466 chr3 ENSEMBL gene 39411054 39411206 153.0 + 0 ENSG00000202363.1 snoRNA SNORA62 3 +43467 chr3 HAVANA gene 39406689 39412542 3936.0 + 0 ENSG00000168028.13 protein_coding RPSA 2 OTTHUMG00000131296.5 ncRNA_host +43468 chr3 HAVANA gene 39494837 39502567 1279.0 - 0 ENSG00000285885.1 antisense AC092058.1 2 OTTHUMG00000192840.1 +43469 chr3 HAVANA gene 39467198 39529479 9237.0 + 0 ENSG00000168314.17 protein_coding MOBP 1 OTTHUMG00000131347.10 +43470 chr3 HAVANA gene 39643638 39644705 774.0 + 0 ENSG00000230757.1 processed_pseudogene NFU1P1 1 OTTHUMG00000156282.1 pseudo_consens +43471 chr3 ENSEMBL gene 39970125 39970266 142.0 + 0 ENSG00000201570.1 snRNA RNU4-56P 3 +43472 chr3 ENSEMBL gene 40209005 40209304 300.0 + 0 ENSG00000265327.2 misc_RNA RN7SL411P 3 +43473 chr3 ENSEMBL gene 40238608 40238741 134.0 + 0 ENSG00000202517.1 snoRNA RF00264 3 +43474 chr3 HAVANA gene 39808914 40260321 5872.0 + 0 ENSG00000170011.13 protein_coding MYRIP 2 OTTHUMG00000131392.3 ncRNA_host +43475 chr3 HAVANA gene 40173145 40309698 5433.0 - 0 ENSG00000280739.2 processed_transcript EIF1B-AS1 2 OTTHUMG00000189530.1 +43476 chr3 HAVANA gene 40309684 40312424 1912.0 + 0 ENSG00000114784.3 protein_coding EIF1B 2 OTTHUMG00000131388.2 +43477 chr3 HAVANA gene 40322715 40323279 565.0 - 0 ENSG00000230274.1 processed_pseudogene PGAM1P3 1 OTTHUMG00000156073.1 pseudo_consens,overlapping_locus +43478 chr3 HAVANA gene 40387156 40428744 3614.0 + 0 ENSG00000168032.9 protein_coding ENTPD3 1 OTTHUMG00000131390.6 +43479 chr3 HAVANA gene 40313802 40453329 2961.0 - 0 ENSG00000223797.5 antisense ENTPD3-AS1 1 OTTHUMG00000156074.2 overlapping_locus +43480 chr3 HAVANA gene 40457292 40468587 8626.0 + 0 ENSG00000188846.13 protein_coding RPL14 2 OTTHUMG00000156046.6 +43481 chr3 HAVANA gene 40477113 40490236 4514.0 + 0 ENSG00000177873.12 protein_coding ZNF619 2 OTTHUMG00000131391.6 +43482 chr3 ENSEMBL gene 40498891 40499003 113.0 - 0 ENSG00000199906.1 snRNA RNU5B-2P 3 +43483 chr3 HAVANA gene 40477131 40518736 3783.0 + 0 ENSG00000177842.12 protein_coding ZNF620 1 OTTHUMG00000156044.5 overlapping_locus +43484 chr3 HAVANA gene 40524878 40574685 8354.0 + 0 ENSG00000172888.11 protein_coding ZNF621 2 OTTHUMG00000131389.4 +43485 chr3 HAVANA gene 40586535 40587428 894.0 - 0 ENSG00000234067.1 processed_pseudogene RPL5P10 1 OTTHUMG00000156008.1 pseudo_consens +43486 chr3 HAVANA gene 40596207 40597494 1288.0 - 0 ENSG00000226845.1 processed_pseudogene EEF1GP3 1 OTTHUMG00000156007.1 pseudo_consens +43487 chr3 HAVANA gene 40603125 40605427 717.0 - 0 ENSG00000226302.1 lincRNA AC122683.1 1 OTTHUMG00000156009.1 +43488 chr3 HAVANA gene 40699066 40699338 273.0 - 0 ENSG00000229072.1 processed_pseudogene HMGN2P24 2 OTTHUMG00000156010.1 +43489 chr3 HAVANA gene 40761545 40761799 255.0 + 0 ENSG00000234287.1 processed_pseudogene AC099560.2 2 OTTHUMG00000156012.1 +43490 chr3 HAVANA gene 40766207 40862626 500.0 + 0 ENSG00000231873.1 lincRNA AC099560.1 1 OTTHUMG00000156011.1 +43491 chr3 HAVANA gene 40970541 40971578 670.0 - 0 ENSG00000233096.1 lincRNA AC099541.1 1 OTTHUMG00000156006.1 +43492 chr3 HAVANA gene 41162287 41168547 610.0 - 0 ENSG00000233919.1 lincRNA AC009743.1 2 OTTHUMG00000156144.1 +43493 chr3 HAVANA gene 41189041 41189236 196.0 + 0 ENSG00000275256.1 processed_pseudogene MRPS31P1 2 OTTHUMG00000187551.1 +43494 chr3 HAVANA gene 41194741 41260096 11927.0 + 0 ENSG00000168036.17 protein_coding CTNNB1 1 OTTHUMG00000131393.15 +43495 chr3 ENSEMBL gene 41687868 41688033 166.0 - 0 ENSG00000252409.1 scaRNA RF00602 3 +43496 chr3 ENSEMBL gene 41766615 41766919 305.0 - 0 ENSG00000222942.1 misc_RNA RN7SKP58 3 +43497 chr3 HAVANA gene 41859350 41859594 245.0 - 0 ENSG00000223513.1 processed_pseudogene ATP6V0E1P2 1 OTTHUMG00000156188.1 pseudo_consens,overlapping_locus +43498 chr3 ENSEMBL gene 41868998 41869095 98.0 - 0 ENSG00000251986.1 misc_RNA RF00019 3 +43499 chr3 ENSEMBL gene 41899111 41899253 143.0 - 0 ENSG00000212145.2 snoRNA RF00096 3 +43500 chr3 HAVANA gene 41955445 41955763 319.0 + 0 ENSG00000234270.1 processed_pseudogene RPL36P20 1 OTTHUMG00000156199.1 pseudo_consens +43501 chr3 HAVANA gene 41246599 41962430 6579.0 - 0 ENSG00000168038.10 protein_coding ULK4 1 OTTHUMG00000156210.3 ncRNA_host,overlapping_locus +43502 chr3 HAVANA gene 41977008 41978034 715.0 + 0 ENSG00000235339.1 processed_pseudogene GEMIN2P2 1 OTTHUMG00000156200.2 pseudo_consens +43503 chr3 HAVANA gene 42051181 42051694 514.0 - 0 ENSG00000229339.1 processed_pseudogene AC093414.1 1 OTTHUMG00000156198.1 pseudo_consens +43504 chr3 HAVANA gene 42145646 42146371 726.0 - 0 ENSG00000234562.1 processed_pseudogene TPMTP2 1 OTTHUMG00000156196.1 pseudo_consens +43505 chr3 ENSEMBL gene 42221840 42221965 126.0 + 0 ENSG00000222872.1 snRNA RNU4-78P 3 +43506 chr3 HAVANA gene 42013802 42225889 10992.0 + 0 ENSG00000182606.14 protein_coding TRAK1 1 OTTHUMG00000131795.9 ncRNA_host +43507 chr3 HAVANA gene 42257825 42266207 2085.0 - 0 ENSG00000187094.11 protein_coding CCK 2 OTTHUMG00000131796.2 +43508 chr3 HAVANA gene 42264989 42266390 1402.0 + 0 ENSG00000281160.1 antisense AC018358.1 2 OTTHUMG00000189593.1 +43509 chr3 HAVANA gene 42321005 42322695 1691.0 + 0 ENSG00000231280.1 processed_pseudogene SALL4P6 2 OTTHUMG00000156186.1 +43510 chr3 HAVANA gene 42340588 42342367 1780.0 + 0 ENSG00000229572.1 processed_pseudogene EIF4BP4 1 OTTHUMG00000156187.1 pseudo_consens +43511 chr3 HAVANA gene 42397078 42410600 1013.0 - 0 ENSG00000157093.8 protein_coding LYZL4 2 OTTHUMG00000131793.2 +43512 chr3 HAVANA gene 42469640 42469879 240.0 + 0 ENSG00000235787.1 processed_pseudogene AC092047.1 1 OTTHUMG00000156170.2 pseudo_consens +43513 chr3 HAVANA gene 42506465 42533258 5197.0 - 0 ENSG00000232354.8 antisense VIPR1-AS1 2 OTTHUMG00000156181.5 +43514 chr3 HAVANA gene 42489299 42537573 7384.0 + 0 ENSG00000114812.12 protein_coding VIPR1 1 OTTHUMG00000131792.8 +43515 chr3 HAVANA gene 42581840 42595114 1298.0 + 0 ENSG00000008324.11 protein_coding SS18L2 2 OTTHUMG00000131794.3 +43516 chr3 HAVANA gene 42547969 42601080 8159.0 - 0 ENSG00000093183.13 protein_coding SEC22C 1 OTTHUMG00000131797.3 +43517 chr3 HAVANA gene 42600614 42648741 17356.0 + 0 ENSG00000114857.17 protein_coding NKTR 2 OTTHUMG00000133037.21 +43518 chr3 HAVANA gene 42601963 42654388 785.0 - 0 ENSG00000230084.5 antisense AC006059.1 2 OTTHUMG00000156209.1 +43519 chr3 HAVANA gene 42653684 42665854 3781.0 + 0 ENSG00000114853.13 protein_coding ZBTB47 2 OTTHUMG00000156207.4 +43520 chr3 ENSEMBL gene 42676189 42676491 303.0 - 0 ENSG00000240203.3 misc_RNA RN7SL567P 3 +43521 chr3 HAVANA gene 42685519 42692544 2517.0 + 0 ENSG00000157119.11 protein_coding KLHL40 2 OTTHUMG00000133045.4 +43522 chr3 HAVANA gene 42692663 42702827 2891.0 - 0 ENSG00000010282.14 protein_coding HHATL 1 OTTHUMG00000133043.4 overlapping_locus +43523 chr3 HAVANA gene 42702653 42706776 1331.0 + 0 ENSG00000230970.3 antisense HHATL-AS1 2 OTTHUMG00000156258.3 +43524 chr3 HAVANA gene 42692663 42732922 799.0 - 0 ENSG00000285539.1 processed_transcript AC006059.3 2 OTTHUMG00000133046.4 overlapping_locus +43525 chr3 HAVANA gene 42732575 42746768 2164.0 + 0 ENSG00000173811.10 antisense CCDC13-AS1 2 OTTHUMG00000156256.1 +43526 chr3 HAVANA gene 42708269 42773253 4558.0 - 0 ENSG00000244607.6 protein_coding CCDC13 2 OTTHUMG00000193425.1 overlapping_locus +43527 chr3 HAVANA gene 42770612 42773635 897.0 + 0 ENSG00000225611.1 antisense LINC02158 2 OTTHUMG00000156257.1 +43528 chr3 HAVANA gene 42705756 42804518 5715.0 - 0 ENSG00000280571.2 protein_coding AC006059.2 2 OTTHUMG00000156277.5 overlapping_locus +43529 chr3 HAVANA gene 42784298 42804531 1675.0 - 0 ENSG00000181061.13 protein_coding HIGD1A 2 OTTHUMG00000190394.1 overlapping_locus +43530 chr3 HAVANA gene 42785087 42852428 1956.0 - 0 ENSG00000235288.3 antisense AC099329.1 2 OTTHUMG00000156432.2 overlapping_locus +43531 chr3 HAVANA gene 42856005 42876165 4441.0 - 0 ENSG00000180432.5 protein_coding CYP8B1 1 OTTHUMG00000133047.2 +43532 chr3 HAVANA gene 42804752 42887974 5457.0 + 0 ENSG00000144648.15 protein_coding ACKR2 2 OTTHUMG00000186377.4 overlapping_locus +43533 chr3 HAVANA gene 42889361 42890306 946.0 + 0 ENSG00000236459.1 processed_pseudogene HNRNPA1P22 1 OTTHUMG00000156284.1 pseudo_consens,overlapping_locus +43534 chr3 HAVANA gene 42809414 42908105 3933.0 + 0 ENSG00000273328.5 processed_transcript AC099329.2 2 OTTHUMG00000189111.1 overlapping_locus +43535 chr3 HAVANA gene 42905731 42917641 5070.0 + 0 ENSG00000182983.14 protein_coding ZNF662 2 OTTHUMG00000133041.6 overlapping_locus +43536 chr3 HAVANA gene 42934252 42936785 2134.0 - 0 ENSG00000206552.4 antisense KRBOX1-AS1 2 OTTHUMG00000156447.1 +43537 chr3 HAVANA gene 42809483 42942792 2943.0 + 0 ENSG00000240747.7 protein_coding KRBOX1 2 OTTHUMG00000186062.1 overlapping_locus +43538 chr3 HAVANA gene 43037121 43037451 331.0 + 0 ENSG00000232375.1 unprocessed_pseudogene AC092042.2 2 OTTHUMG00000156457.1 overlapping_locus +43539 chr3 HAVANA gene 42809446 43055871 1654.0 + 0 ENSG00000273291.5 protein_coding AC092042.3 2 OTTHUMG00000156448.10 overlapping_locus +43540 chr3 HAVANA gene 42979267 43060211 4411.0 + 0 ENSG00000144649.8 protein_coding FAM198A 2 OTTHUMG00000156449.5 overlapping_locus +43541 chr3 HAVANA gene 43087479 43088068 509.0 + 0 ENSG00000227245.1 lincRNA AC092042.1 2 OTTHUMG00000156464.1 +43542 chr3 HAVANA gene 43088236 43090443 701.0 + 0 ENSG00000285766.1 lincRNA AC092042.4 2 OTTHUMG00000193211.1 +43543 chr3 HAVANA gene 43079232 43106076 2668.0 - 0 ENSG00000144647.5 protein_coding POMGNT2 2 OTTHUMG00000133038.2 +43544 chr3 ENSEMBL gene 43314951 43315255 305.0 + 0 ENSG00000241939.3 misc_RNA RN7SL517P 3 +43545 chr3 HAVANA gene 43346923 43352152 2324.0 - 0 ENSG00000234617.2 antisense SNRK-AS1 2 OTTHUMG00000156490.3 +43546 chr3 HAVANA gene 43286512 43424764 6981.0 + 0 ENSG00000163788.13 protein_coding SNRK 1 OTTHUMG00000156491.2 ncRNA_host +43547 chr3 ENSEMBL gene 43472477 43472596 120.0 + 0 ENSG00000251811.1 misc_RNA RF00019 3 +43548 chr3 HAVANA gene 43484972 43485880 515.0 - 0 ENSG00000223916.1 processed_pseudogene AC097638.1 1 OTTHUMG00000156492.1 pseudo_consens,overlapping_locus +43549 chr3 HAVANA gene 43354859 43691594 5287.0 - 0 ENSG00000160746.12 protein_coding ANO10 1 OTTHUMG00000133044.14 overlapping_locus +43550 chr3 HAVANA gene 43690108 43734371 7549.0 + 0 ENSG00000011198.9 protein_coding ABHD5 1 OTTHUMG00000133039.9 +43551 chr3 HAVANA gene 43778961 43779982 411.0 - 0 ENSG00000235886.1 lincRNA AC006055.1 2 OTTHUMG00000156509.1 +43552 chr3 HAVANA gene 43996896 43997443 548.0 + 0 ENSG00000271192.1 lincRNA AC006058.2 2 OTTHUMG00000185193.1 +43553 chr3 HAVANA gene 43998081 43999149 1069.0 - 0 ENSG00000272121.1 lincRNA AC006058.3 2 OTTHUMG00000185495.1 +43554 chr3 ENSEMBL gene 44071087 44071186 100.0 + 0 ENSG00000252980.1 snRNA RNU6-367P 3 +43555 chr3 ENSEMBL gene 44114212 44114310 99.0 + 0 ENSG00000207954.1 miRNA MIR138-1 3 +43556 chr3 HAVANA gene 44115818 44117487 1670.0 - 0 ENSG00000280435.1 TEC AC006058.4 2 OTTHUMG00000175703.1 +43557 chr3 HAVANA gene 44117299 44122365 5067.0 + 0 ENSG00000261786.1 lincRNA AC006058.1 2 OTTHUMG00000175704.1 +43558 chr3 HAVANA gene 44241886 44332098 5334.0 + 0 ENSG00000173769.4 protein_coding TOPAZ1 2 OTTHUMG00000156172.1 +43559 chr3 HAVANA gene 44337941 44338552 612.0 - 0 ENSG00000271937.1 antisense AC104187.1 2 OTTHUMG00000185518.1 +43560 chr3 HAVANA gene 44338119 44409451 8743.0 + 0 ENSG00000179152.19 protein_coding TCAIM 2 OTTHUMG00000133049.7 +43561 chr3 HAVANA gene 44424134 44429529 990.0 + 0 ENSG00000283036.2 lincRNA LINC01988 2 OTTHUMG00000191479.2 +43562 chr3 HAVANA gene 44421127 44439946 1204.0 - 0 ENSG00000225873.4 transcribed_unitary_pseudogene C3orf86 2 OTTHUMG00000156179.7 +43563 chr3 HAVANA gene 44431720 44477670 18871.0 - 0 ENSG00000185219.16 protein_coding ZNF445 2 OTTHUMG00000133042.4 +43564 chr3 HAVANA gene 44494847 44510636 4480.0 - 0 ENSG00000178917.16 protein_coding ZNF852 2 OTTHUMG00000156453.4 +43565 chr3 HAVANA gene 44524744 44525805 1062.0 - 0 ENSG00000214825.2 processed_pseudogene EI24P3 1 OTTHUMG00000156451.1 pseudo_consens +43566 chr3 HAVANA gene 44528955 44529391 437.0 - 0 ENSG00000277509.1 processed_pseudogene AC099669.1 2 OTTHUMG00000187588.1 +43567 chr3 HAVANA gene 44579938 44581026 1089.0 - 0 ENSG00000214820.3 processed_pseudogene MPRIPP1 1 OTTHUMG00000156454.1 pseudo_consens,overlapping_locus +43568 chr3 HAVANA gene 44555193 44594173 4208.0 + 0 ENSG00000196345.12 protein_coding ZKSCAN7 1 OTTHUMG00000186378.1 overlapping_locus +43569 chr3 HAVANA gene 44578223 44599694 6513.0 + 0 ENSG00000144792.9 protein_coding ZNF660 2 OTTHUMG00000133097.6 overlapping_locus +43570 chr3 HAVANA gene 44617128 44624797 623.0 - 0 ENSG00000233509.2 antisense ZNF197-AS1 1 OTTHUMG00000156308.2 overlapping_locus +43571 chr3 HAVANA gene 44584888 44648471 6767.0 + 0 ENSG00000186448.14 protein_coding ZNF197 2 OTTHUMG00000133089.6 overlapping_locus +43572 chr3 HAVANA gene 44648727 44660791 2663.0 + 0 ENSG00000169981.10 protein_coding ZNF35 1 OTTHUMG00000133091.12 +43573 chr3 HAVANA gene 44667412 44669364 1953.0 + 0 ENSG00000272077.1 lincRNA AC124045.1 2 OTTHUMG00000185519.1 +43574 chr3 HAVANA gene 44557357 44685653 456.0 - 0 ENSG00000236869.1 antisense ZKSCAN7-AS1 2 OTTHUMG00000156455.2 overlapping_locus +43575 chr3 HAVANA gene 44709311 44710886 1576.0 - 0 ENSG00000235805.1 processed_pseudogene SOCS5P3 1 OTTHUMG00000156450.1 pseudo_consens +43576 chr3 HAVANA gene 44712643 44723831 3273.0 + 0 ENSG00000196653.11 protein_coding ZNF502 2 OTTHUMG00000133086.5 +43577 chr3 HAVANA gene 44729596 44737083 3910.0 + 0 ENSG00000186446.11 protein_coding ZNF501 2 OTTHUMG00000133048.4 +43578 chr3 HAVANA gene 44737661 44761662 5259.0 - 0 ENSG00000163807.5 protein_coding KIAA1143 2 OTTHUMG00000133088.3 +43579 chr3 ENSEMBL gene 44861888 44861981 94.0 + 0 ENSG00000284498.1 miRNA MIR564 3 +43580 chr3 HAVANA gene 44861869 44865670 3106.0 + 0 ENSG00000169964.7 protein_coding TMEM42 2 OTTHUMG00000133092.2 ncRNA_host,overlapping_locus +43581 chr3 HAVANA gene 44761717 44873376 5285.0 + 0 ENSG00000163808.16 protein_coding KIF15 2 OTTHUMG00000156307.7 ncRNA_host,overlapping_locus +43582 chr3 HAVANA gene 44899178 44900925 569.0 + 0 ENSG00000235845.1 antisense AC098649.1 1 OTTHUMG00000156317.1 overlapping_locus +43583 chr3 HAVANA gene 44874608 44914990 5443.0 + 0 ENSG00000163810.11 protein_coding TGM4 2 OTTHUMG00000133096.4 overlapping_locus +43584 chr3 HAVANA gene 44937673 44938482 502.0 + 0 ENSG00000227123.1 processed_pseudogene RPL12P44 1 OTTHUMG00000156997.2 pseudo_consens +43585 chr3 HAVANA gene 44915257 44976185 7609.0 - 0 ENSG00000163812.13 protein_coding ZDHHC3 1 OTTHUMG00000133093.9 +43586 chr3 ENSEMBL gene 45034474 45034588 115.0 - 0 ENSG00000252410.1 snRNA RNU5B-3P 3 +43587 chr3 HAVANA gene 44975241 45036066 4442.0 + 0 ENSG00000075914.12 protein_coding EXOSC7 1 OTTHUMG00000133095.2 overlapping_locus +43588 chr3 HAVANA gene 45001548 45036071 1105.0 + 0 ENSG00000163815.5 protein_coding CLEC3B 2 OTTHUMG00000133087.2 overlapping_locus +43589 chr3 HAVANA gene 45082278 45146422 6507.0 - 0 ENSG00000163814.7 protein_coding CDCP1 2 OTTHUMG00000133090.3 +43590 chr3 HAVANA gene 45159774 45160175 402.0 - 0 ENSG00000224094.1 processed_pseudogene RPS24P8 1 OTTHUMG00000156988.1 pseudo_consens +43591 chr3 HAVANA gene 45224466 45226278 1813.0 - 0 ENSG00000249992.1 protein_coding TMEM158 2 OTTHUMG00000160317.2 +43592 chr3 ENSEMBL gene 45255409 45255620 212.0 - 0 ENSG00000202268.2 snoRNA RF00012 3 +43593 chr3 HAVANA gene 45483974 45509545 575.0 - 0 ENSG00000232455.2 antisense LARS2-AS1 2 OTTHUMG00000156654.2 +43594 chr3 HAVANA gene 45388506 45549421 6829.0 + 0 ENSG00000011376.10 protein_coding LARS2 2 OTTHUMG00000133177.8 +43595 chr3 HAVANA gene 45555394 45686338 12673.0 + 0 ENSG00000144791.9 protein_coding LIMD1 1 OTTHUMG00000133453.2 +43596 chr3 HAVANA gene 45679043 45689134 1651.0 - 0 ENSG00000230530.1 bidirectional_promoter_lncRNA LIMD1-AS1 2 OTTHUMG00000156652.1 +43597 chr3 ENSEMBL gene 45742675 45742970 296.0 + 0 ENSG00000244357.3 misc_RNA RN7SL145P 3 +43598 chr3 HAVANA gene 45689056 45745424 7352.0 + 0 ENSG00000211456.10 protein_coding SACM1L 2 OTTHUMG00000156653.6 ncRNA_host +43599 chr3 HAVANA gene 45749627 45750651 1025.0 + 0 ENSG00000279017.1 TEC AC098476.1 2 OTTHUMG00000175706.1 +43600 chr3 HAVANA gene 45755450 45796535 6651.0 - 0 ENSG00000163817.15 protein_coding SLC6A20 1 OTTHUMG00000133446.8 +43601 chr3 HAVANA gene 45842265 45866571 716.0 + 0 ENSG00000285788.1 antisense AC099782.2 2 OTTHUMG00000193091.1 +43602 chr3 HAVANA gene 45883640 45884113 474.0 - 0 ENSG00000236930.1 processed_pseudogene AC099782.1 1 OTTHUMG00000156563.1 pseudo_consens,overlapping_locus +43603 chr3 HAVANA gene 45886504 45903177 2809.0 + 0 ENSG00000173585.15 protein_coding CCR9 1 OTTHUMG00000133450.4 +43604 chr3 ENSEMBL gene 45903187 45903298 112.0 + 0 ENSG00000201635.1 misc_RNA RF00019 3 +43605 chr3 HAVANA gene 45823316 45916042 7201.0 - 0 ENSG00000163818.16 protein_coding LZTFL1 1 OTTHUMG00000133452.11 overlapping_locus +43606 chr3 HAVANA gene 45940933 45948353 3769.0 + 0 ENSG00000172215.5 protein_coding CXCR6 2 OTTHUMG00000133448.4 +43607 chr3 HAVANA gene 45917899 45995824 8895.0 - 0 ENSG00000163820.14 protein_coding FYCO1 2 OTTHUMG00000133447.4 +43608 chr3 HAVANA gene 46023296 46024156 861.0 + 0 ENSG00000226933.1 processed_pseudogene NRBF2P2 1 OTTHUMG00000156499.1 pseudo_consens +43609 chr3 HAVANA gene 46017024 46027742 5403.0 - 0 ENSG00000173578.7 protein_coding XCR1 2 OTTHUMG00000133449.3 +43610 chr3 HAVANA gene 46142358 46143677 1320.0 - 0 ENSG00000229515.1 processed_pseudogene FLT1P1 2 OTTHUMG00000156234.1 +43611 chr3 HAVANA gene 46201709 46208396 2731.0 - 0 ENSG00000163823.3 protein_coding CCR1 2 OTTHUMG00000133451.2 +43612 chr3 HAVANA gene 46163604 46266706 3568.0 + 0 ENSG00000183625.14 protein_coding CCR3 2 OTTHUMG00000133484.4 +43613 chr3 HAVANA gene 46310591 46311922 1332.0 - 0 ENSG00000236736.1 processed_pseudogene UQCRC2P1 1 OTTHUMG00000156315.1 pseudo_consens +43614 chr3 HAVANA gene 46353734 46360928 3733.0 + 0 ENSG00000121807.5 protein_coding CCR2 2 OTTHUMG00000156466.3 +43615 chr3 HAVANA gene 46370854 46376206 3672.0 + 0 ENSG00000160791.13 protein_coding CCR5 1 OTTHUMG00000133481.4 +43616 chr3 HAVANA gene 46364955 46407059 656.0 - 0 ENSG00000223552.1 antisense AC098613.1 2 OTTHUMG00000156326.1 +43617 chr3 HAVANA gene 46407163 46412997 3061.0 + 0 ENSG00000121797.9 protein_coding CCRL2 2 OTTHUMG00000156318.5 +43618 chr3 HAVANA gene 46416524 46423591 2951.0 - 0 ENSG00000283646.1 lincRNA LINC02009 2 OTTHUMG00000191680.1 +43619 chr3 HAVANA gene 46435645 46485234 4247.0 - 0 ENSG00000012223.12 protein_coding LTF 1 OTTHUMG00000156325.17 +43620 chr3 HAVANA gene 46497491 46500949 1321.0 + 0 ENSG00000163825.3 protein_coding RTP3 2 OTTHUMG00000133483.2 +43621 chr3 HAVANA gene 46557398 46559694 2297.0 + 0 ENSG00000268324.2 antisense LRRC2-AS1 2 OTTHUMG00000187144.1 +43622 chr3 HAVANA gene 46515423 46580099 5622.0 - 0 ENSG00000163827.12 protein_coding LRRC2 1 OTTHUMG00000133479.2 +43623 chr3 HAVANA gene 46574534 46582463 3006.0 + 0 ENSG00000241186.9 protein_coding TDGF1 2 OTTHUMG00000191980.1 overlapping_locus +43624 chr3 HAVANA gene 46581150 46617226 291.0 + 0 ENSG00000283877.1 protein_coding AC104304.1 2 OTTHUMG00000191662.1 overlapping_locus +43625 chr3 HAVANA gene 46612435 46626543 1826.0 + 0 ENSG00000283473.2 protein_coding FAM240A 2 OTTHUMG00000133482.3 overlapping_locus +43626 chr3 ENSEMBL gene 46650510 46650590 81.0 + 0 ENSG00000251967.1 snoRNA RF00591 3 +43627 chr3 HAVANA gene 46668997 46693704 9057.0 - 0 ENSG00000178038.16 protein_coding ALS2CL 2 OTTHUMG00000128673.7 +43628 chr3 HAVANA gene 46694528 46710886 1936.0 + 0 ENSG00000181585.4 protein_coding TMIE 2 OTTHUMG00000149909.2 +43629 chr3 HAVANA gene 46712115 46717907 1372.0 - 0 ENSG00000283706.1 protein_coding PRSS50 2 OTTHUMG00000164067.2 overlapping_locus +43630 chr3 HAVANA gene 46719583 46736429 982.0 - 0 ENSG00000261603.2 transcribed_unitary_pseudogene PRSS46P 1 OTTHUMG00000177121.19 pseudo_consens,overlapping_locus +43631 chr3 HAVANA gene 46742092 46744755 1050.0 - 0 ENSG00000188086.13 protein_coding PRSS45 2 OTTHUMG00000192150.1 overlapping_locus +43632 chr3 HAVANA gene 46798123 46798390 268.0 + 0 ENSG00000238013.1 processed_pseudogene AC109583.1 1 OTTHUMG00000156523.1 pseudo_consens +43633 chr3 HAVANA gene 46809359 46812558 1146.0 - 0 ENSG00000226074.4 transcribed_unprocessed_pseudogene PRSS44 1 OTTHUMG00000154622.2 overlapping_locus +43634 chr3 HAVANA gene 46742092 46812558 3128.0 - 0 ENSG00000284672.1 protein_coding AC109583.3 2 OTTHUMG00000133480.7 overlapping_locus +43635 chr3 HAVANA gene 46712115 46812574 2960.0 - 0 ENSG00000206549.13 protein_coding PRSS50 2 OTTHUMG00000192149.1 +43636 chr3 HAVANA gene 46829542 46834095 1857.0 - 0 ENSG00000178055.11 protein_coding PRSS42 1 OTTHUMG00000156496.4 +43637 chr3 HAVANA gene 46857872 46882169 1360.0 - 0 ENSG00000160808.9 protein_coding MYL3 2 OTTHUMG00000133516.5 +43638 chr3 HAVANA gene 46877746 46903799 2758.0 + 0 ENSG00000160801.13 protein_coding PTH1R 2 OTTHUMG00000133515.5 +43639 chr3 HAVANA gene 46918807 46918935 129.0 - 0 ENSG00000273682.1 processed_pseudogene AC109583.2 2 OTTHUMG00000187552.1 +43640 chr3 HAVANA gene 46921726 46982010 4754.0 - 0 ENSG00000160799.11 protein_coding CCDC12 2 OTTHUMG00000133513.5 +43641 chr3 HAVANA gene 46979683 47009703 9819.0 + 0 ENSG00000160796.16 protein_coding NBEAL2 1 OTTHUMG00000156497.5 +43642 chr3 HAVANA gene 47010824 47013465 1728.0 + 0 ENSG00000236409.2 transcribed_unitary_pseudogene NRADDP 2 OTTHUMG00000154641.2 +43643 chr3 HAVANA gene 47028855 47029030 176.0 + 0 ENSG00000275940.1 processed_pseudogene MRPL57P3 2 OTTHUMG00000187555.1 +43644 chr3 HAVANA gene 47016429 47163967 10099.0 - 0 ENSG00000181555.20 protein_coding SETD2 2 OTTHUMG00000133514.5 +43645 chr3 HAVANA gene 47164497 47246601 4898.0 + 0 ENSG00000227398.3 antisense KIF9-AS1 2 OTTHUMG00000156533.3 +43646 chr3 ENSEMBL gene 47250523 47250626 104.0 - 0 ENSG00000239128.1 snoRNA SNORD13P3 3 +43647 chr3 HAVANA gene 47228026 47283451 5850.0 - 0 ENSG00000088727.12 protein_coding KIF9 1 OTTHUMG00000133512.4 ncRNA_host +43648 chr3 HAVANA gene 47282917 47346816 7064.0 + 0 ENSG00000114648.11 protein_coding KLHL18 2 OTTHUMG00000156522.3 +43649 chr3 HAVANA gene 47346950 47349073 2124.0 + 0 ENSG00000280173.1 TEC AC104447.1 2 OTTHUMG00000175707.1 +43650 chr3 HAVANA gene 47379089 47380999 1911.0 - 0 ENSG00000260236.1 antisense AC099778.1 2 OTTHUMG00000175709.1 +43651 chr3 HAVANA gene 47381011 47413441 5981.0 + 0 ENSG00000076201.14 protein_coding PTPN23 2 OTTHUMG00000133520.5 +43652 chr3 HAVANA gene 47469777 47469987 211.0 + 0 ENSG00000276925.1 processed_pseudogene AC099778.2 1 OTTHUMG00000187557.1 pseudo_consens +43653 chr3 HAVANA gene 47413694 47477126 6301.0 - 0 ENSG00000114650.19 protein_coding SCAP 2 OTTHUMG00000125539.15 +43654 chr3 HAVANA gene 47499841 47500407 567.0 + 0 ENSG00000271161.1 transcribed_processed_pseudogene BOLA2P2 1 OTTHUMG00000184335.1 pseudo_consens +43655 chr3 HAVANA gene 47495640 47513761 3313.0 - 0 ENSG00000163832.15 protein_coding ELP6 1 OTTHUMG00000133521.13 +43656 chr3 ENSEMBL gene 47560229 47560524 296.0 - 0 ENSG00000244732.3 misc_RNA RN7SL870P 3 +43657 chr3 HAVANA gene 47562239 47580792 4366.0 - 0 ENSG00000114646.9 protein_coding CSPG5 2 OTTHUMG00000133518.2 +43658 chr3 HAVANA gene 47601715 47604677 1428.0 - 0 ENSG00000214773.1 sense_intronic AC112512.1 2 OTTHUMG00000179466.1 overlapping_locus +43659 chr3 HAVANA gene 47663626 47663934 309.0 + 0 ENSG00000235695.1 processed_pseudogene AC130472.1 1 OTTHUMG00000156834.1 pseudo_consens +43660 chr3 HAVANA gene 47585272 47782106 7645.0 - 0 ENSG00000173473.10 protein_coding SMARCC1 2 OTTHUMG00000133519.2 overlapping_locus +43661 chr3 ENSEMBL gene 47818005 47818128 124.0 + 0 ENSG00000274420.1 misc_RNA RF02271 3 +43662 chr3 ENSEMBL gene 47849555 47849629 75.0 + 0 ENSG00000221585.1 miRNA MIR1226 3 +43663 chr3 HAVANA gene 47802909 47850195 7744.0 + 0 ENSG00000132153.14 protein_coding DHX30 1 OTTHUMG00000133522.2 ncRNA_host +43664 chr3 ENSEMBL gene 47931808 47931914 107.0 - 0 ENSG00000199591.1 misc_RNA RF00019 3 +43665 chr3 HAVANA gene 47960327 47961081 755.0 - 0 ENSG00000224895.1 processed_pseudogene VPS26BP1 1 OTTHUMG00000156831.1 pseudo_consens,overlapping_locus +43666 chr3 HAVANA gene 48039267 48039490 224.0 + 0 ENSG00000270285.1 processed_pseudogene AC124916.2 1 OTTHUMG00000184332.1 pseudo_consens +43667 chr3 HAVANA gene 47850690 48089272 14943.0 - 0 ENSG00000047849.21 protein_coding MAP4 1 OTTHUMG00000156828.7 ncRNA_host,overlapping_locus +43668 chr3 ENSEMBL gene 48094801 48095105 305.0 - 0 ENSG00000265078.2 misc_RNA RN7SL664P 3 +43669 chr3 HAVANA gene 48120669 48121215 547.0 - 0 ENSG00000236768.1 processed_pseudogene AC124916.1 1 OTTHUMG00000156830.1 pseudo_consens +43670 chr3 HAVANA gene 48161176 48161417 242.0 + 0 ENSG00000235627.1 processed_pseudogene SNRPFP4 1 OTTHUMG00000156827.2 pseudo_consens +43671 chr3 ENSEMBL gene 48180328 48180389 62.0 + 0 ENSG00000253056.1 snRNA RNU7-128P 3 +43672 chr3 HAVANA gene 48181547 48181726 180.0 + 0 ENSG00000231884.1 processed_pseudogene NDUFB1P1 1 OTTHUMG00000156836.1 pseudo_consens +43673 chr3 HAVANA gene 48157146 48188402 4117.0 - 0 ENSG00000164045.11 protein_coding CDC25A 2 OTTHUMG00000133535.5 +43674 chr3 ENSEMBL gene 48196564 48196616 53.0 + 0 ENSG00000265483.1 miRNA MIR4443 3 +43675 chr3 HAVANA gene 48223347 48225491 745.0 + 0 ENSG00000164047.4 protein_coding CAMP 2 OTTHUMG00000133526.2 +43676 chr3 HAVANA gene 48256350 48256938 589.0 - 0 ENSG00000229759.1 processed_pseudogene MRPS18AP1 1 OTTHUMG00000156829.1 pseudo_consens +43677 chr3 ENSEMBL gene 48288587 48288694 108.0 + 0 ENSG00000199476.1 misc_RNA RF00019 3 +43678 chr3 HAVANA gene 48290793 48291375 583.0 - 0 ENSG00000228638.1 transcribed_processed_pseudogene FCF1P2 2 OTTHUMG00000156835.1 overlapping_locus +43679 chr3 HAVANA gene 48241100 48299253 5521.0 + 0 ENSG00000164048.13 protein_coding ZNF589 1 OTTHUMG00000156833.3 ncRNA_host +43680 chr3 HAVANA gene 48290722 48301685 7258.0 - 0 ENSG00000172113.9 protein_coding NME6 1 OTTHUMG00000133531.6 overlapping_locus +43681 chr3 ENSEMBL gene 48316360 48316459 100.0 - 0 ENSG00000252466.1 miRNA MIR2115 3 +43682 chr3 HAVANA gene 48306842 48328341 444.0 - 0 ENSG00000229453.2 protein_coding SPINK8 2 OTTHUMG00000156832.2 ncRNA_host +43683 chr3 ENSEMBL gene 48379834 48380132 299.0 + 0 ENSG00000277483.1 misc_RNA RN7SL321P 3 +43684 chr3 HAVANA gene 48372219 48401259 3488.0 + 0 ENSG00000164049.14 protein_coding FBXW12 1 OTTHUMG00000133530.4 ncRNA_host +43685 chr3 HAVANA gene 48403854 48430051 9733.0 - 0 ENSG00000164050.12 protein_coding PLXNB1 2 OTTHUMG00000133527.5 +43686 chr3 HAVANA gene 48432164 48440456 2410.0 - 0 ENSG00000164051.13 protein_coding CCDC51 2 OTTHUMG00000133534.26 overlapping_locus +43687 chr3 HAVANA gene 48440257 48444208 1139.0 + 0 ENSG00000232112.3 protein_coding TMA7 2 OTTHUMG00000156588.3 +43688 chr3 HAVANA gene 48440352 48446656 1051.0 - 0 ENSG00000244380.1 antisense AC134772.1 2 OTTHUMG00000156589.2 overlapping_locus +43689 chr3 HAVANA gene 48465811 48467645 1835.0 + 0 ENSG00000213689.13 protein_coding TREX1 2 OTTHUMG00000156205.8 overlapping_locus +43690 chr3 HAVANA gene 48446710 48467645 5431.0 + 0 ENSG00000164053.20 protein_coding ATRIP 2 OTTHUMG00000133532.7 overlapping_locus +43691 chr3 HAVANA gene 48467798 48504826 4664.0 - 0 ENSG00000164054.15 protein_coding SHISA5 1 OTTHUMG00000133529.19 +43692 chr3 ENSEMBL gene 48549961 48550021 61.0 - 0 ENSG00000278799.1 miRNA MIR6823 3 +43693 chr3 HAVANA gene 48517684 48562015 6107.0 - 0 ENSG00000114268.11 protein_coding PFKFB4 1 OTTHUMG00000133528.19 ncRNA_host,overlapping_locus +43694 chr3 HAVANA gene 48561727 48563773 1481.0 - 0 ENSG00000145040.3 protein_coding UCN2 2 OTTHUMG00000133533.1 overlapping_locus +43695 chr3 ENSEMBL gene 48578902 48578977 76.0 - 0 ENSG00000284251.1 miRNA MIR711 3 +43696 chr3 HAVANA gene 48564073 48595267 11071.0 - 0 ENSG00000114270.17 protein_coding COL7A1 2 OTTHUMG00000133541.3 ncRNA_host +43697 chr3 HAVANA gene 48599002 48610976 3236.0 - 0 ENSG00000010256.10 protein_coding UQCRC1 2 OTTHUMG00000133539.3 +43698 chr3 HAVANA gene 48620759 48621855 662.0 - 0 ENSG00000183396.3 protein_coding TMEM89 2 OTTHUMG00000156647.1 +43699 chr3 ENSEMBL gene 48633636 48633698 63.0 - 0 ENSG00000284364.1 miRNA MIR6824 3 +43700 chr3 HAVANA gene 48625723 48635493 6373.0 - 0 ENSG00000225697.12 protein_coding SLC26A6 1 OTTHUMG00000186381.1 ncRNA_host,overlapping_locus +43701 chr3 ENSEMBL gene 48644194 48644280 87.0 - 0 ENSG00000284575.1 miRNA MIR4793 3 +43702 chr3 HAVANA gene 48636469 48662915 13873.0 - 0 ENSG00000008300.16 protein_coding CELSR3 2 OTTHUMG00000133544.2 ncRNA_host,overlapping_locus +43703 chr3 HAVANA gene 48663776 48669174 196.0 + 0 ENSG00000228350.1 antisense LINC02585 2 OTTHUMG00000156627.1 +43704 chr3 HAVANA gene 48672455 48672733 279.0 + 0 ENSG00000271973.1 lincRNA AC141002.1 2 OTTHUMG00000185525.1 +43705 chr3 HAVANA gene 48673844 48686364 3431.0 - 0 ENSG00000213672.7 protein_coding NCKIPSD 1 OTTHUMG00000133542.4 +43706 chr3 HAVANA gene 48688003 48740353 5624.0 - 0 ENSG00000068745.14 protein_coding IP6K2 1 OTTHUMG00000133543.6 +43707 chr3 HAVANA gene 48744597 48847846 6644.0 - 0 ENSG00000114302.15 protein_coding PRKAR2A 1 OTTHUMG00000133540.4 +43708 chr3 HAVANA gene 48847572 48851981 3917.0 + 0 ENSG00000224424.7 antisense PRKAR2A-AS1 1 OTTHUMG00000156671.2 +43709 chr3 HAVANA gene 48856931 48898993 1982.0 - 0 ENSG00000178537.9 protein_coding SLC25A20 1 OTTHUMG00000133538.3 +43710 chr3 HAVANA gene 48917782 48919385 1604.0 - 0 ENSG00000221883.3 protein_coding ARIH2OS 2 OTTHUMG00000156672.2 +43711 chr3 HAVANA gene 48979918 48983985 660.0 - 0 ENSG00000235236.1 antisense AC137630.2 2 OTTHUMG00000156717.1 +43712 chr3 HAVANA gene 48985485 48985963 479.0 - 0 ENSG00000273211.1 lincRNA AC137630.4 2 OTTHUMG00000185890.1 overlapping_locus +43713 chr3 HAVANA gene 48918821 48986382 8017.0 + 0 ENSG00000177479.19 protein_coding ARIH2 2 OTTHUMG00000133547.16 +43714 chr3 HAVANA gene 48985049 48989988 782.0 - 0 ENSG00000223343.1 antisense AC137630.1 2 OTTHUMG00000156716.1 overlapping_locus +43715 chr3 HAVANA gene 48997221 48999442 763.0 - 0 ENSG00000285416.1 unitary_pseudogene AC137630.5 2 OTTHUMG00000192474.1 +43716 chr3 HAVANA gene 48989886 49007154 7641.0 + 0 ENSG00000178467.17 protein_coding P4HTM 2 OTTHUMG00000074057.5 overlapping_locus +43717 chr3 HAVANA gene 49007062 49015953 5304.0 + 0 ENSG00000178252.17 protein_coding WDR6 1 OTTHUMG00000133546.13 overlapping_locus +43718 chr3 ENSEMBL gene 49020148 49020234 87.0 - 0 ENSG00000199032.1 miRNA MIR425 3 +43719 chr3 ENSEMBL gene 49020618 49020709 92.0 - 0 ENSG00000207605.3 miRNA MIR191 3 +43720 chr3 HAVANA gene 49015488 49022293 3682.0 - 0 ENSG00000178149.16 protein_coding DALRD3 1 OTTHUMG00000156748.4 ncRNA_host +43721 chr3 HAVANA gene 49020459 49023495 2434.0 + 0 ENSG00000178057.14 protein_coding NDUFAF3 2 OTTHUMG00000156773.2 +43722 chr3 HAVANA gene 49024325 49029408 2773.0 - 0 ENSG00000178035.11 protein_coding IMPDH2 1 OTTHUMG00000156771.2 +43723 chr3 HAVANA gene 49029316 49029706 391.0 + 0 ENSG00000272434.1 antisense AC137630.3 2 OTTHUMG00000185526.1 +43724 chr3 ENSEMBL gene 49083233 49083532 300.0 + 0 ENSG00000241461.3 misc_RNA RN7SL182P 3 +43725 chr3 HAVANA gene 49029707 49094363 5499.0 - 0 ENSG00000198218.10 protein_coding QRICH1 1 OTTHUMG00000156772.3 +43726 chr3 ENSEMBL gene 49099854 49099914 61.0 - 0 ENSG00000284488.1 miRNA MIR6890 3 +43727 chr3 HAVANA gene 49095932 49105135 4708.0 - 0 ENSG00000172053.17 protein_coding QARS 1 OTTHUMG00000156774.12 ncRNA_host +43728 chr3 HAVANA gene 49108046 49120938 5731.0 - 0 ENSG00000172046.18 protein_coding USP19 1 OTTHUMG00000133611.6 +43729 chr3 HAVANA gene 49121114 49133118 6865.0 - 0 ENSG00000172037.13 protein_coding LAMB2 2 OTTHUMG00000156807.4 +43730 chr3 HAVANA gene 49140086 49160851 1799.0 - 0 ENSG00000270441.1 unprocessed_pseudogene AC135506.1 1 OTTHUMG00000184392.1 pseudo_consens +43731 chr3 HAVANA gene 49162535 49166321 1781.0 - 0 ENSG00000177352.9 protein_coding CCDC71 2 OTTHUMG00000156815.2 +43732 chr3 HAVANA gene 49171611 49176486 2158.0 + 0 ENSG00000185909.14 protein_coding KLHDC8B 2 OTTHUMG00000156814.3 +43733 chr3 HAVANA gene 49177632 49191858 883.0 - 0 ENSG00000236980.9 protein_coding C3orf84 2 OTTHUMG00000156816.3 +43734 chr3 HAVANA gene 49252129 49252264 136.0 - 0 ENSG00000270538.1 processed_pseudogene AC121247.2 1 OTTHUMG00000184387.1 pseudo_consens +43735 chr3 HAVANA gene 49198428 49258104 4330.0 + 0 ENSG00000173421.16 protein_coding CCDC36 2 OTTHUMG00000155920.3 +43736 chr3 HAVANA gene 49260085 49261316 1232.0 + 0 ENSG00000225399.4 lincRNA AC121247.1 2 OTTHUMG00000156818.1 +43737 chr3 ENSEMBL gene 49270132 49270239 108.0 + 0 ENSG00000199546.1 misc_RNA RF00019 3 +43738 chr3 ENSEMBL gene 49274120 49274186 67.0 + 0 ENSG00000264633.1 miRNA MIR4271 3 +43739 chr3 HAVANA gene 49268602 49277909 4813.0 - 0 ENSG00000188315.7 protein_coding C3orf62 2 OTTHUMG00000156819.3 overlapping_locus +43740 chr3 HAVANA gene 49277831 49340712 6659.0 - 0 ENSG00000114316.12 protein_coding USP4 1 OTTHUMG00000156825.2 overlapping_locus +43741 chr3 HAVANA gene 49357171 49358600 1430.0 - 0 ENSG00000233276.4 polymorphic_pseudogene GPX1 2 OTTHUMG00000156837.6 +43742 chr3 HAVANA gene 49365145 49367006 517.0 - 0 ENSG00000235908.1 sense_intronic RHOA-IT1 2 OTTHUMG00000156844.1 overlapping_locus +43743 chr3 HAVANA gene 49359145 49412998 2582.0 - 0 ENSG00000067560.10 protein_coding RHOA 1 OTTHUMG00000156838.6 overlapping_locus +43744 chr3 HAVANA gene 49412206 49416475 2747.0 + 0 ENSG00000145022.4 protein_coding TCTA 2 OTTHUMG00000156846.2 +43745 chr3 HAVANA gene 49416775 49422753 5746.0 - 0 ENSG00000145020.15 protein_coding AMT 1 OTTHUMG00000156847.12 overlapping_locus +43746 chr3 HAVANA gene 49416777 49429314 6807.0 - 0 ENSG00000283189.2 protein_coding AC104452.1 2 OTTHUMG00000191676.4 overlapping_locus +43747 chr3 HAVANA gene 49422946 49429326 2929.0 - 0 ENSG00000145029.13 protein_coding NICN1 2 OTTHUMG00000156848.4 overlapping_locus +43748 chr3 ENSEMBL gene 49467115 49467228 114.0 - 0 ENSG00000201301.1 rRNA_pseudogene RNA5SP130 3 +43749 chr3 HAVANA gene 49468703 49535618 6923.0 + 0 ENSG00000173402.11 protein_coding DAG1 2 OTTHUMG00000156869.7 +43750 chr3 HAVANA gene 49549306 49554366 2603.0 - 0 ENSG00000226913.1 lincRNA BSN-DT 1 OTTHUMG00000156881.1 +43751 chr3 HAVANA gene 49640483 49641769 461.0 - 0 ENSG00000235120.1 antisense BSN-AS1 2 OTTHUMG00000156880.1 +43752 chr3 HAVANA gene 49554489 49671545 16225.0 + 0 ENSG00000164061.4 protein_coding BSN 1 OTTHUMG00000133750.1 +43753 chr3 HAVANA gene 49674002 49683963 4669.0 + 0 ENSG00000164062.12 protein_coding APEH 2 OTTHUMG00000156882.4 +43754 chr3 HAVANA gene 49684480 49684983 423.0 - 0 ENSG00000259970.1 processed_transcript AC099668.1 2 OTTHUMG00000155919.2 overlapping_locus +43755 chr3 HAVANA gene 49683947 49689501 5084.0 - 0 ENSG00000173531.15 protein_coding MST1 1 OTTHUMG00000155918.6 overlapping_locus +43756 chr3 HAVANA gene 49716834 49719695 2862.0 - 0 ENSG00000176020.8 protein_coding AMIGO3 2 OTTHUMG00000158152.1 overlapping_locus +43757 chr3 HAVANA gene 49689499 49721529 7458.0 + 0 ENSG00000164068.15 protein_coding RNF123 2 OTTHUMG00000156891.6 +43758 chr3 HAVANA gene 49716844 49723951 6742.0 - 0 ENSG00000173540.12 protein_coding GMPPB 2 OTTHUMG00000158151.1 overlapping_locus +43759 chr3 HAVANA gene 49758483 49758656 174.0 + 0 ENSG00000239576.1 processed_pseudogene COX6CP14 1 OTTHUMG00000158196.1 pseudo_consens +43760 chr3 HAVANA gene 49775285 49775614 330.0 + 0 ENSG00000244730.1 processed_pseudogene AC139451.1 1 OTTHUMG00000158199.1 pseudo_consens +43761 chr3 HAVANA gene 49724294 49786542 5200.0 - 0 ENSG00000176095.11 protein_coding IP6K1 1 OTTHUMG00000158197.1 +43762 chr3 HAVANA gene 49790732 49799835 3163.0 - 0 ENSG00000187492.8 protein_coding CDHR4 2 OTTHUMG00000158198.2 +43763 chr3 HAVANA gene 49803254 49805030 1040.0 + 0 ENSG00000185614.4 protein_coding INKA1 2 OTTHUMG00000158268.1 +43764 chr3 ENSEMBL gene 49806137 49806245 109.0 - 0 ENSG00000283726.1 miRNA MIR5193 3 +43765 chr3 HAVANA gene 49805207 49813946 4545.0 - 0 ENSG00000182179.12 protein_coding UBA7 2 OTTHUMG00000158267.2 ncRNA_host +43766 chr3 HAVANA gene 49828599 49856574 3263.0 - 0 ENSG00000183763.8 protein_coding TRAIP 2 OTTHUMG00000158269.3 +43767 chr3 ENSEMBL gene 49863375 49863660 286.0 - 0 ENSG00000264706.2 misc_RNA RN7SL217P 3 +43768 chr3 HAVANA gene 49857988 49870222 3900.0 - 0 ENSG00000164076.16 protein_coding CAMKV 1 OTTHUMG00000158288.7 ncRNA_host +43769 chr3 HAVANA gene 49873347 49877305 3959.0 - 0 ENSG00000234667.2 unitary_pseudogene ACTBP13 1 OTTHUMG00000154689.2 pseudo_consens +43770 chr3 HAVANA gene 49899302 49903757 544.0 + 0 ENSG00000230698.1 antisense AC105935.2 2 OTTHUMG00000156715.1 +43771 chr3 HAVANA gene 49887002 49903873 5252.0 - 0 ENSG00000164078.12 protein_coding MST1R 1 OTTHUMG00000156709.6 +43772 chr3 HAVANA gene 49903845 49916937 921.0 + 0 ENSG00000228008.1 antisense AC105935.1 1 OTTHUMG00000156735.2 +43773 chr3 HAVANA gene 49907160 49930173 6446.0 - 0 ENSG00000164077.14 protein_coding MON1A 1 OTTHUMG00000156737.7 +43774 chr3 HAVANA gene 49940007 50100045 7302.0 + 0 ENSG00000004534.14 protein_coding RBM6 1 OTTHUMG00000156736.12 overlapping_locus +43775 chr3 HAVANA gene 50099603 50100988 1386.0 - 0 ENSG00000281691.1 antisense RBM5-AS1 2 OTTHUMG00000189567.1 +43776 chr3 HAVANA gene 50088908 50119021 10368.0 + 0 ENSG00000003756.16 protein_coding RBM5 1 OTTHUMG00000156785.8 overlapping_locus +43777 chr3 HAVANA gene 50116022 50156085 2949.0 - 0 ENSG00000235016.1 antisense SEMA3F-AS1 2 OTTHUMG00000156795.1 +43778 chr3 ENSEMBL gene 50173326 50173419 94.0 + 0 ENSG00000207922.1 miRNA MIR566 3 +43779 chr3 HAVANA gene 50155045 50189075 4826.0 + 0 ENSG00000001617.11 protein_coding SEMA3F 2 OTTHUMG00000156806.8 ncRNA_host +43780 chr3 HAVANA gene 50191612 50196516 2754.0 + 0 ENSG00000114349.9 protein_coding GNAT1 1 OTTHUMG00000156808.2 +43781 chr3 HAVANA gene 50205246 50221486 3968.0 + 0 ENSG00000188338.14 protein_coding SLC38A3 2 OTTHUMG00000156764.7 +43782 chr3 ENSEMBL gene 50227436 50227490 55.0 + 0 ENSG00000275334.1 miRNA MIR5787 3 +43783 chr3 HAVANA gene 50239618 50239984 367.0 + 0 ENSG00000213600.3 sense_intronic U73169.1 2 OTTHUMG00000186575.1 overlapping_locus +43784 chr3 HAVANA gene 50226292 50259355 7650.0 + 0 ENSG00000114353.16 protein_coding GNAI2 1 OTTHUMG00000156940.1 ncRNA_host,overlapping_locus +43785 chr3 HAVANA gene 50260303 50263358 2625.0 + 0 ENSG00000230454.1 lincRNA U73166.1 1 OTTHUMG00000156937.1 +43786 chr3 HAVANA gene 50266641 50267371 338.0 - 0 ENSG00000232352.1 antisense SEMA3B-AS1 1 OTTHUMG00000156955.1 +43787 chr3 ENSEMBL gene 50273236 50273297 62.0 + 0 ENSG00000283848.1 miRNA MIR6872 3 +43788 chr3 HAVANA gene 50267558 50277546 5768.0 + 0 ENSG00000012171.19 protein_coding SEMA3B 2 OTTHUMG00000156970.5 ncRNA_host +43789 chr3 HAVANA gene 50279027 50288114 1494.0 + 0 ENSG00000179564.3 protein_coding LSMEM2 2 OTTHUMG00000156938.1 +43790 chr3 HAVANA gene 50287732 50292918 3712.0 - 0 ENSG00000214706.10 protein_coding IFRD2 2 OTTHUMG00000156935.3 overlapping_locus +43791 chr3 HAVANA gene 50296402 50299421 2188.0 - 0 ENSG00000243477.5 protein_coding NAA80 2 OTTHUMG00000156939.2 overlapping_locus +43792 chr3 HAVANA gene 50292831 50299468 2030.0 - 0 ENSG00000186792.16 protein_coding HYAL3 2 OTTHUMG00000156936.4 overlapping_locus +43793 chr3 HAVANA gene 50299889 50312381 3132.0 - 0 ENSG00000114378.16 protein_coding HYAL1 2 OTTHUMG00000156941.1 +43794 chr3 HAVANA gene 50317790 50322906 4545.0 - 0 ENSG00000068001.13 protein_coding HYAL2 2 OTTHUMG00000156876.1 overlapping_locus +43795 chr3 HAVANA gene 50320027 50328251 2406.0 - 0 ENSG00000114383.9 protein_coding TUSC2 1 OTTHUMG00000156877.1 overlapping_locus +43796 chr3 HAVANA gene 50337511 50338300 790.0 + 0 ENSG00000281358.1 antisense RASSF1-AS1 2 OTTHUMG00000189572.1 +43797 chr3 HAVANA gene 50329782 50340980 3683.0 - 0 ENSG00000068028.17 protein_coding RASSF1 2 OTTHUMG00000149958.6 +43798 chr3 HAVANA gene 50341106 50345697 250.0 + 0 ENSG00000235058.1 antisense ZMYND10-AS1 2 OTTHUMG00000156875.1 +43799 chr3 HAVANA gene 50341110 50346852 4009.0 - 0 ENSG00000004838.13 protein_coding ZMYND10 1 OTTHUMG00000156874.5 +43800 chr3 HAVANA gene 50347330 50351091 3677.0 - 0 ENSG00000114388.12 protein_coding NPRL2 2 OTTHUMG00000156864.2 +43801 chr3 HAVANA gene 50350695 50358460 2086.0 + 0 ENSG00000114395.10 protein_coding CYB561D2 1 OTTHUMG00000156813.4 overlapping_locus +43802 chr3 HAVANA gene 50354749 50359610 2197.0 - 0 ENSG00000126062.3 protein_coding TMEM115 2 OTTHUMG00000044212.3 +43803 chr3 HAVANA gene 50350892 50367923 408.0 + 0 ENSG00000272104.1 protein_coding Z84492.1 2 OTTHUMG00000185535.1 overlapping_locus +43804 chr3 HAVANA gene 50365334 50368197 1202.0 + 0 ENSG00000271858.5 antisense CYB561D2 2 OTTHUMG00000185536.1 overlapping_locus +43805 chr3 ENSEMBL gene 50419781 50419899 119.0 + 0 ENSG00000202322.1 rRNA_pseudogene RNA5SP131 3 +43806 chr3 HAVANA gene 50362799 50504244 6322.0 - 0 ENSG00000007402.11 protein_coding CACNA2D2 2 OTTHUMG00000156887.4 +43807 chr3 HAVANA gene 50558025 50571027 3248.0 - 0 ENSG00000088543.14 protein_coding C3orf18 1 OTTHUMG00000156854.6 +43808 chr3 HAVANA gene 50569152 50596168 19425.0 + 0 ENSG00000114735.9 protein_coding HEMK1 2 OTTHUMG00000156849.2 +43809 chr3 HAVANA gene 50599879 50601148 339.0 - 0 ENSG00000280382.1 lincRNA AC096920.1 2 OTTHUMG00000189232.1 +43810 chr3 HAVANA gene 50606490 50611831 5112.0 - 0 ENSG00000114737.15 protein_coding CISH 2 OTTHUMG00000156853.1 +43811 chr3 HAVANA gene 50611520 50649297 3921.0 + 0 ENSG00000114738.10 protein_coding MAPKAPK3 1 OTTHUMG00000156850.11 +43812 chr3 HAVANA gene 50669989 50672048 2060.0 + 0 ENSG00000273356.1 lincRNA LINC02019 2 OTTHUMG00000175710.2 +43813 chr3 ENSEMBL gene 50675080 50675163 84.0 + 0 ENSG00000272543.1 miRNA MIR4787 3 +43814 chr3 HAVANA gene 50685551 50685791 241.0 - 0 ENSG00000228337.1 processed_pseudogene PPIAP69 1 OTTHUMG00000156855.1 pseudo_consens +43815 chr3 HAVANA gene 50719482 50719951 470.0 - 0 ENSG00000213587.3 processed_pseudogene AC126120.1 1 OTTHUMG00000156851.1 pseudo_consens +43816 chr3 HAVANA gene 50786674 50788285 1309.0 - 0 ENSG00000235278.2 processed_pseudogene ZNF652P1 2 OTTHUMG00000156856.1 +43817 chr3 HAVANA gene 50876712 50877657 734.0 - 0 ENSG00000240959.1 processed_pseudogene ST13P14 1 OTTHUMG00000156852.2 pseudo_consens +43818 chr3 HAVANA gene 50675241 51384198 8755.0 + 0 ENSG00000088538.12 protein_coding DOCK3 2 OTTHUMG00000156892.5 +43819 chr3 HAVANA gene 51385047 51389397 2111.0 + 0 ENSG00000145050.16 protein_coding MANF 2 OTTHUMG00000156897.6 +43820 chr3 HAVANA gene 51391268 51397908 6641.0 + 0 ENSG00000259956.1 protein_coding RBM15B 2 OTTHUMG00000156896.1 +43821 chr3 HAVANA gene 51395867 51500002 6849.0 - 0 ENSG00000145041.15 protein_coding DCAF1 2 OTTHUMG00000156895.4 +43822 chr3 ENSEMBL gene 51611438 51611562 125.0 - 0 ENSG00000221015.1 snRNA RNU6ATAC29P 3 +43823 chr3 HAVANA gene 51541144 51668667 11924.0 + 0 ENSG00000164080.13 protein_coding RAD54L2 1 OTTHUMG00000152936.5 overlapping_locus +43824 chr3 ENSEMBL gene 51694465 51694582 118.0 - 0 ENSG00000201595.1 rRNA_pseudogene RNA5SP132 3 +43825 chr3 HAVANA gene 51662693 51704323 5688.0 + 0 ENSG00000164081.12 protein_coding TEX264 2 OTTHUMG00000156901.2 overlapping_locus +43826 chr3 HAVANA gene 51707070 51718613 7096.0 + 0 ENSG00000164082.14 protein_coding GRM2 2 OTTHUMG00000156902.3 +43827 chr3 HAVANA gene 51778561 51779241 478.0 - 0 ENSG00000214686.5 protein_coding IQCF6 2 OTTHUMG00000187148.2 +43828 chr3 HAVANA gene 51817603 51819635 1174.0 + 0 ENSG00000224792.6 transcribed_processed_pseudogene IQCF4 2 OTTHUMG00000156909.1 overlapping_locus +43829 chr3 HAVANA gene 51826883 51830856 1832.0 + 0 ENSG00000229972.8 protein_coding IQCF3 2 OTTHUMG00000193406.1 overlapping_locus +43830 chr3 HAVANA gene 51798803 51830856 3722.0 + 0 ENSG00000285749.1 protein_coding AC097636.1 2 OTTHUMG00000156910.4 overlapping_locus +43831 chr3 HAVANA gene 51861629 51863424 628.0 + 0 ENSG00000184345.4 protein_coding IQCF2 2 OTTHUMG00000156914.2 +43832 chr3 ENSEMBL gene 51872178 51872464 287.0 + 0 ENSG00000241789.3 misc_RNA RN7SL504P 3 +43833 chr3 HAVANA gene 51873721 51875584 512.0 - 0 ENSG00000214681.3 protein_coding IQCF5 2 OTTHUMG00000156913.1 +43834 chr3 HAVANA gene 51873596 51875767 2000.0 + 0 ENSG00000235455.1 antisense IQCF5-AS1 2 OTTHUMG00000156912.1 +43835 chr3 HAVANA gene 51894876 51903335 745.0 - 0 ENSG00000173389.15 protein_coding IQCF1 2 OTTHUMG00000156908.1 +43836 chr3 HAVANA gene 51933430 51941941 1578.0 - 0 ENSG00000114767.6 protein_coding RRP9 2 OTTHUMG00000156930.1 +43837 chr3 HAVANA gene 51942345 51948867 2928.0 + 0 ENSG00000041880.14 protein_coding PARP3 2 OTTHUMG00000156931.5 +43838 chr3 HAVANA gene 51951849 51953902 2054.0 - 0 ENSG00000280422.1 TEC AC115284.2 2 OTTHUMG00000175712.1 +43839 chr3 HAVANA gene 51955314 51957504 2191.0 + 0 ENSG00000180929.5 protein_coding GPR62 2 OTTHUMG00000157367.1 +43840 chr3 HAVANA gene 51957454 51974016 3738.0 - 0 ENSG00000090097.21 protein_coding PCBP4 1 OTTHUMG00000157366.33 overlapping_locus +43841 chr3 HAVANA gene 51961212 51974031 547.0 - 0 ENSG00000272762.5 processed_transcript AC115284.1 2 OTTHUMG00000161549.2 overlapping_locus +43842 chr3 HAVANA gene 51971426 51981199 2378.0 + 0 ENSG00000248487.8 protein_coding ABHD14A 2 OTTHUMG00000157818.2 overlapping_locus +43843 chr3 HAVANA gene 51968510 51983409 3161.0 - 0 ENSG00000114779.19 protein_coding ABHD14B 2 OTTHUMG00000157816.24 overlapping_locus +43844 chr3 HAVANA gene 51974706 51989183 4761.0 + 0 ENSG00000114786.16 protein_coding ABHD14A-ACY1 1 OTTHUMG00000166447.7 overlapping_locus +43845 chr3 HAVANA gene 51983278 51989202 4794.0 + 0 ENSG00000243989.8 protein_coding ACY1 1 OTTHUMG00000157815.14 overlapping_locus +43846 chr3 HAVANA gene 51993522 51995942 2058.0 - 0 ENSG00000162244.11 protein_coding RPL29 2 OTTHUMG00000155262.6 +43847 chr3 HAVANA gene 52046763 52048657 928.0 + 0 ENSG00000285685.1 lincRNA AC115284.3 2 OTTHUMG00000193237.1 +43848 chr3 HAVANA gene 52048919 52056550 5648.0 - 0 ENSG00000164086.9 protein_coding DUSP7 2 OTTHUMG00000157819.1 +43849 chr3 HAVANA gene 52075253 52154690 2247.0 - 0 ENSG00000164087.7 protein_coding POC1A 2 OTTHUMG00000157817.1 +43850 chr3 HAVANA gene 52193170 52194785 1078.0 + 0 ENSG00000242849.2 processed_pseudogene ALDOAP1 1 OTTHUMG00000157814.2 pseudo_consens +43851 chr3 HAVANA gene 52198086 52214327 2536.0 + 0 ENSG00000023330.14 protein_coding ALAS1 1 OTTHUMG00000158108.2 +43852 chr3 HAVANA gene 52217016 52219012 1997.0 - 0 ENSG00000280003.1 TEC AC097637.2 2 OTTHUMG00000175714.1 +43853 chr3 HAVANA gene 52221080 52226163 3870.0 - 0 ENSG00000239732.3 protein_coding TLR9 2 OTTHUMG00000158106.1 overlapping_locus +43854 chr3 HAVANA gene 52221081 52231190 3804.0 - 0 ENSG00000173366.11 protein_coding AC097637.1 1 OTTHUMG00000162044.1 overlapping_locus +43855 chr3 HAVANA gene 52228610 52239260 1824.0 - 0 ENSG00000247596.8 protein_coding TWF2 1 OTTHUMG00000158105.3 overlapping_locus +43856 chr3 HAVANA gene 52239258 52241097 1101.0 + 0 ENSG00000243224.1 antisense AC006252.1 2 OTTHUMG00000158107.1 +43857 chr3 HAVANA gene 52245793 52250597 3571.0 + 0 ENSG00000164088.17 protein_coding PPM1M 1 OTTHUMG00000153046.10 +43858 chr3 ENSEMBL gene 52268278 52268361 84.0 - 0 ENSG00000199150.3 miRNA MIRLET7G 3 +43859 chr3 HAVANA gene 52254421 52288020 5726.0 - 0 ENSG00000164091.11 protein_coding WDR82 2 OTTHUMG00000150391.3 ncRNA_host +43860 chr3 HAVANA gene 52287089 52293476 3013.0 + 0 ENSG00000168237.17 protein_coding GLYCTK 1 OTTHUMG00000158380.1 +43861 chr3 ENSEMBL gene 52294219 52294308 90.0 - 0 ENSG00000207926.1 miRNA MIR135A1 3 +43862 chr3 HAVANA gene 52288580 52299067 1391.0 - 0 ENSG00000242797.3 processed_transcript GLYCTK-AS1 2 OTTHUMG00000158379.1 ncRNA_host +43863 chr3 HAVANA gene 52373652 52374882 1231.0 + 0 ENSG00000239557.1 processed_pseudogene AC092045.1 1 OTTHUMG00000158377.1 pseudo_consens,overlapping_locus +43864 chr3 HAVANA gene 52316319 52400491 13872.0 + 0 ENSG00000114841.17 protein_coding DNAH1 2 OTTHUMG00000158378.3 overlapping_locus +43865 chr3 HAVANA gene 52401013 52410350 5055.0 - 0 ENSG00000163930.9 protein_coding BAP1 2 OTTHUMG00000158392.4 +43866 chr3 HAVANA gene 52410657 52423641 3367.0 + 0 ENSG00000010318.20 protein_coding PHF7 1 OTTHUMG00000158495.2 +43867 chr3 HAVANA gene 52433053 52445085 5011.0 - 0 ENSG00000010319.6 protein_coding SEMA3G 2 OTTHUMG00000158570.2 +43868 chr3 HAVANA gene 52451102 52454070 1168.0 - 0 ENSG00000114854.7 protein_coding TNNC1 1 OTTHUMG00000158572.2 +43869 chr3 HAVANA gene 52455118 52493071 9161.0 + 0 ENSG00000010322.15 protein_coding NISCH 2 OTTHUMG00000158571.2 +43870 chr3 HAVANA gene 52495338 52524495 10588.0 + 0 ENSG00000010327.10 protein_coding STAB1 2 OTTHUMG00000158574.3 +43871 chr3 HAVANA gene 52524385 52535054 4719.0 - 0 ENSG00000168268.10 protein_coding NT5DC2 2 OTTHUMG00000158626.22 +43872 chr3 ENSEMBL gene 52551846 52551943 98.0 - 0 ENSG00000252768.1 snRNA RNU6-856P 3 +43873 chr3 ENSEMBL gene 52560570 52560707 138.0 + 0 ENSG00000221518.1 snRNA RNU6ATAC16P 3 +43874 chr3 HAVANA gene 52534013 52579237 2482.0 + 0 ENSG00000168273.7 protein_coding SMIM4 1 OTTHUMG00000158726.2 ncRNA_host +43875 chr3 HAVANA gene 52545352 52685917 9654.0 - 0 ENSG00000163939.18 protein_coding PBRM1 1 OTTHUMG00000152663.3 ncRNA_host +43876 chr3 ENSEMBL gene 52688882 52688961 80.0 + 0 ENSG00000280904.1 snoRNA RF01183 3 +43877 chr3 ENSEMBL gene 52688890 52688962 73.0 + 0 ENSG00000252787.2 snoRNA RF00569 3 +43878 chr3 ENSEMBL gene 52689248 52689315 68.0 + 0 ENSG00000212493.1 snoRNA SNORD19 3 +43879 chr3 ENSEMBL gene 52690744 52690827 84.0 + 0 ENSG00000238862.1 snoRNA SNORD19B 3 +43880 chr3 ENSEMBL gene 52691378 52691453 76.0 + 0 ENSG00000222345.1 snoRNA RF00569 3 +43881 chr3 ENSEMBL gene 52692736 52692812 77.0 + 0 ENSG00000212452.1 snoRNA SNORD69 3 +43882 chr3 HAVANA gene 52681156 52694492 3318.0 + 0 ENSG00000163938.16 protein_coding GNL3 2 OTTHUMG00000158752.3 ncRNA_host +43883 chr3 HAVANA gene 52694488 52706032 3783.0 - 0 ENSG00000016864.18 protein_coding GLT8D1 2 OTTHUMG00000158759.8 +43884 chr3 HAVANA gene 52704955 52711146 5324.0 + 0 ENSG00000114902.13 protein_coding SPCS1 2 OTTHUMG00000154930.7 +43885 chr3 HAVANA gene 52732547 52733867 1321.0 + 0 ENSG00000275956.1 processed_pseudogene AC104446.1 2 OTTHUMG00000187559.1 +43886 chr3 HAVANA gene 52734735 52735013 279.0 + 0 ENSG00000270941.1 processed_pseudogene AC006254.2 1 OTTHUMG00000184328.1 pseudo_consens +43887 chr3 HAVANA gene 52753526 52754690 884.0 + 0 ENSG00000271137.1 processed_pseudogene AC006254.3 1 OTTHUMG00000184326.1 pseudo_consens +43888 chr3 HAVANA gene 52708449 52770949 6391.0 - 0 ENSG00000114904.12 protein_coding NEK4 1 OTTHUMG00000158836.17 +43889 chr3 HAVANA gene 52777592 52792068 4544.0 + 0 ENSG00000055957.10 protein_coding ITIH1 2 OTTHUMG00000150312.9 +43890 chr3 HAVANA gene 52794768 52809009 5921.0 + 0 ENSG00000162267.12 protein_coding ITIH3 2 OTTHUMG00000158956.6 +43891 chr3 HAVANA gene 52823935 52825314 395.0 + 0 ENSG00000239799.1 antisense ITIH4-AS1 2 OTTHUMG00000158983.2 +43892 chr3 HAVANA gene 52812975 52831479 5462.0 - 0 ENSG00000055955.15 protein_coding ITIH4 2 OTTHUMG00000159023.2 overlapping_locus +43893 chr3 HAVANA gene 52833114 52835219 902.0 - 0 ENSG00000272573.5 protein_coding MUSTN1 2 OTTHUMG00000159024.5 overlapping_locus +43894 chr3 HAVANA gene 52813282 52835729 6315.0 - 0 ENSG00000243696.4 protein_coding AC006254.1 1 OTTHUMG00000186063.3 overlapping_locus +43895 chr3 ENSEMBL gene 52846463 52846552 90.0 - 0 ENSG00000275789.1 miRNA MIR8064 3 +43896 chr3 HAVANA gene 52848085 52848553 469.0 - 0 ENSG00000279144.1 TEC AC099667.1 2 OTTHUMG00000159046.1 overlapping_locus +43897 chr3 HAVANA gene 52833121 52897562 6271.0 - 0 ENSG00000248592.7 protein_coding TMEM110-MUSTN1 2 OTTHUMG00000160756.1 ncRNA_host,overlapping_locus +43898 chr3 HAVANA gene 52836219 52897596 5730.0 - 0 ENSG00000213533.11 protein_coding STIMATE 1 OTTHUMG00000150346.9 ncRNA_host,overlapping_locus +43899 chr3 HAVANA gene 52903572 53046750 5676.0 - 0 ENSG00000163935.13 protein_coding SFMBT1 2 OTTHUMG00000159052.14 overlapping_locus +43900 chr3 HAVANA gene 53046166 53048122 1957.0 + 0 ENSG00000280417.1 TEC AC096887.2 2 OTTHUMG00000159078.1 +43901 chr3 HAVANA gene 53064283 53065091 809.0 - 0 ENSG00000242142.1 processed_pseudogene SERBP1P3 1 OTTHUMG00000159077.1 pseudo_consens,overlapping_locus +43902 chr3 HAVANA gene 52969119 53099453 1760.0 - 0 ENSG00000272305.5 protein_coding AC096887.1 2 OTTHUMG00000185626.1 overlapping_locus +43903 chr3 HAVANA gene 53088483 53130462 5488.0 - 0 ENSG00000163933.9 protein_coding RFT1 1 OTTHUMG00000074035.5 overlapping_locus +43904 chr3 HAVANA gene 53156009 53192717 3396.0 + 0 ENSG00000163932.13 protein_coding PRKCD 2 OTTHUMG00000133659.7 +43905 chr3 HAVANA gene 53224707 53256052 9507.0 - 0 ENSG00000163931.15 protein_coding TKT 2 OTTHUMG00000158192.2 +43906 chr3 ENSEMBL gene 53290640 53290751 112.0 + 0 ENSG00000274967.1 misc_RNA RF00019 3 +43907 chr3 ENSEMBL gene 53333060 53333128 69.0 - 0 ENSG00000207109.1 snoRNA RF00212 3 +43908 chr3 HAVANA gene 53283428 53347610 6127.0 - 0 ENSG00000272886.5 protein_coding DCP1A 2 OTTHUMG00000158193.7 ncRNA_host +43909 chr3 ENSEMBL gene 53387713 53387836 124.0 - 0 ENSG00000212608.1 snoRNA RF00568 3 +43910 chr3 HAVANA gene 53474700 53475089 390.0 - 0 ENSG00000227224.1 processed_pseudogene AC092035.1 1 OTTHUMG00000157294.1 pseudo_consens +43911 chr3 ENSEMBL gene 53530322 53530401 80.0 - 0 ENSG00000251987.1 snoRNA RF00154 3 +43912 chr3 HAVANA gene 53797764 53798019 256.0 - 0 ENSG00000271916.1 antisense AC012467.1 2 OTTHUMG00000185632.1 +43913 chr3 HAVANA gene 53328963 53813733 20588.0 + 0 ENSG00000157388.16 protein_coding CACNA1D 1 OTTHUMG00000158278.10 +43914 chr3 HAVANA gene 53812335 53846390 7758.0 - 0 ENSG00000016391.10 protein_coding CHDH 2 OTTHUMG00000158281.4 +43915 chr3 HAVANA gene 53858994 53861576 2583.0 - 0 ENSG00000271976.1 antisense AC012467.2 2 OTTHUMG00000185633.1 +43916 chr3 HAVANA gene 53846580 53865800 3038.0 + 0 ENSG00000056736.9 protein_coding IL17RB 1 OTTHUMG00000158280.2 +43917 chr3 HAVANA gene 53867066 53882202 4066.0 - 0 ENSG00000113812.13 protein_coding ACTR8 1 OTTHUMG00000158279.4 +43918 chr3 HAVANA gene 53884410 53891988 2165.0 - 0 ENSG00000113811.10 protein_coding SELENOK 2 OTTHUMG00000158656.1 +43919 chr3 HAVANA gene 54047749 54048793 1045.0 - 0 ENSG00000242983.1 processed_pseudogene CABYRP1 1 OTTHUMG00000158459.1 pseudo_consens +43920 chr3 HAVANA gene 54626215 54626646 432.0 + 0 ENSG00000229806.1 processed_pseudogene RPS15P5 1 OTTHUMG00000157295.1 pseudo_consens,overlapping_locus +43921 chr3 HAVANA gene 54632122 54639857 3140.0 - 0 ENSG00000265992.1 sense_intronic ESRG 2 OTTHUMG00000179678.1 +43922 chr3 HAVANA gene 54874605 54901255 2078.0 - 0 ENSG00000243715.1 antisense CACNA2D3-AS1 2 OTTHUMG00000158579.1 +43923 chr3 HAVANA gene 54918237 54967088 1584.0 - 0 ENSG00000144771.7 protein_coding LRTM1 2 OTTHUMG00000158578.1 +43924 chr3 HAVANA gene 54122547 55074557 4670.0 + 0 ENSG00000157445.14 protein_coding CACNA2D3 2 OTTHUMG00000158580.3 overlapping_locus +43925 chr3 HAVANA gene 55166910 55175732 429.0 - 0 ENSG00000239991.1 lincRNA AC092059.1 2 OTTHUMG00000158357.1 +43926 chr3 HAVANA gene 55178172 55189214 474.0 + 0 ENSG00000243572.1 lincRNA LINC02017 2 OTTHUMG00000158362.1 +43927 chr3 HAVANA gene 55296200 55300738 1602.0 + 0 ENSG00000240708.1 lincRNA LINC02030 2 OTTHUMG00000158359.1 +43928 chr3 HAVANA gene 55335462 55350915 587.0 - 0 ENSG00000242568.1 lincRNA AC121764.2 2 OTTHUMG00000158360.1 +43929 chr3 HAVANA gene 55360443 55361829 384.0 - 0 ENSG00000242775.1 lincRNA AC121764.3 2 OTTHUMG00000158358.1 +43930 chr3 HAVANA gene 55487699 55488308 500.0 + 0 ENSG00000244586.1 antisense WNT5A-AS1 2 OTTHUMG00000158382.1 +43931 chr3 HAVANA gene 55465715 55490539 7397.0 - 0 ENSG00000114251.14 protein_coding WNT5A 2 OTTHUMG00000158361.6 +43932 chr3 HAVANA gene 55493830 55505261 563.0 - 0 ENSG00000242317.1 lincRNA AC121764.1 2 OTTHUMG00000158383.1 +43933 chr3 HAVANA gene 55610603 55613104 553.0 + 0 ENSG00000240777.2 lincRNA AC025572.1 2 OTTHUMG00000162604.1 +43934 chr3 HAVANA gene 55657206 55659382 2177.0 - 0 ENSG00000281708.1 sense_intronic ERC2-IT1 2 OTTHUMG00000189578.1 +43935 chr3 ENSEMBL gene 55852492 55852594 103.0 - 0 ENSG00000264013.1 miRNA MIR3938 3 +43936 chr3 ENSEMBL gene 56072104 56072407 304.0 + 0 ENSG00000200379.1 misc_RNA RN7SKP45 3 +43937 chr3 ENSEMBL gene 56185104 56185222 119.0 + 0 ENSG00000200238.1 rRNA_pseudogene RNA5SP133 3 +43938 chr3 HAVANA gene 55508308 56468363 7933.0 - 0 ENSG00000187672.12 protein_coding ERC2 2 OTTHUMG00000158390.4 ncRNA_host +43939 chr3 HAVANA gene 56557161 56621818 9267.0 + 0 ENSG00000180376.16 protein_coding CCDC66 2 OTTHUMG00000155748.4 +43940 chr3 HAVANA gene 56620133 56683237 9824.0 - 0 ENSG00000163946.13 protein_coding FAM208A 2 OTTHUMG00000158827.5 +43941 chr3 HAVANA gene 56940040 56960854 647.0 + 0 ENSG00000240198.5 antisense ARHGEF3-AS1 2 OTTHUMG00000158863.2 +43942 chr3 HAVANA gene 57060441 57075432 2413.0 + 0 ENSG00000186451.1 protein_coding SPATA12 2 OTTHUMG00000158862.2 +43943 chr3 HAVANA gene 56727418 57079329 6594.0 - 0 ENSG00000163947.11 protein_coding ARHGEF3 1 OTTHUMG00000158857.9 +43944 chr3 HAVANA gene 57078943 57080101 1159.0 + 0 ENSG00000272202.1 antisense AC097358.2 2 OTTHUMG00000185634.1 +43945 chr3 HAVANA gene 57134142 57134723 582.0 + 0 ENSG00000229863.1 processed_pseudogene AC097358.1 1 OTTHUMG00000157296.1 pseudo_consens +43946 chr3 HAVANA gene 57089982 57170306 9561.0 - 0 ENSG00000144730.17 protein_coding IL17RD 2 OTTHUMG00000150171.4 +43947 chr3 HAVANA gene 57197838 57227606 1493.0 - 0 ENSG00000163666.9 protein_coding HESX1 1 OTTHUMG00000158597.7 +43948 chr3 HAVANA gene 57227726 57278105 7513.0 + 0 ENSG00000157500.11 protein_coding APPL1 2 OTTHUMG00000133756.13 +43949 chr3 HAVANA gene 57268347 57292682 3232.0 - 0 ENSG00000239388.8 protein_coding ASB14 1 OTTHUMG00000158602.2 +43950 chr3 ENSEMBL gene 57493667 57493780 114.0 + 0 ENSG00000212392.1 misc_RNA RF00019 3 +43951 chr3 ENSEMBL gene 57512450 57512555 106.0 + 0 ENSG00000206918.1 snRNA RNU6-1181P 3 +43952 chr3 HAVANA gene 57519669 57520010 342.0 - 0 ENSG00000239831.1 processed_pseudogene RNF7P1 1 OTTHUMG00000158603.1 pseudo_consens,overlapping_locus +43953 chr3 HAVANA gene 57530345 57530967 623.0 - 0 ENSG00000237186.1 processed_pseudogene AC092418.1 1 OTTHUMG00000157298.1 pseudo_consens,overlapping_locus +43954 chr3 ENSEMBL gene 57536252 57536358 107.0 - 0 ENSG00000202428.1 snRNA RNU6-108P 3 +43955 chr3 HAVANA gene 57293699 57544344 13275.0 - 0 ENSG00000174844.14 protein_coding DNAH12 1 OTTHUMG00000158598.3 ncRNA_host,overlapping_locus +43956 chr3 ENSEMBL gene 57548838 57548945 108.0 + 0 ENSG00000206815.1 snRNA RNU6-483P 3 +43957 chr3 HAVANA gene 57556276 57566844 8947.0 + 0 ENSG00000174840.8 protein_coding PDE12 2 OTTHUMG00000158599.2 +43958 chr3 HAVANA gene 57571363 57598220 2595.0 - 0 ENSG00000168374.10 protein_coding ARF4 1 OTTHUMG00000158601.5 +43959 chr3 HAVANA gene 57597715 57600927 597.0 + 0 ENSG00000272146.5 antisense ARF4-AS1 2 OTTHUMG00000185640.1 +43960 chr3 ENSEMBL gene 57619447 57619572 126.0 + 0 ENSG00000210841.1 snRNA RNU6ATAC26P 3 +43961 chr3 HAVANA gene 57628810 57654918 364.0 + 0 ENSG00000239801.1 antisense DENND6A-AS1 1 OTTHUMG00000158638.1 +43962 chr3 HAVANA gene 57625457 57693089 5124.0 - 0 ENSG00000174839.12 protein_coding DENND6A 2 OTTHUMG00000158639.3 +43963 chr3 HAVANA gene 57693205 57696596 2919.0 + 0 ENSG00000241933.1 lincRNA DENND6A-DT 2 OTTHUMG00000158637.1 +43964 chr3 HAVANA gene 57800056 57801448 1070.0 - 0 ENSG00000270772.1 processed_pseudogene PDHA1P1 1 OTTHUMG00000184386.1 pseudo_consens +43965 chr3 HAVANA gene 57755450 57929168 14147.0 + 0 ENSG00000163681.14 protein_coding SLMAP 2 OTTHUMG00000133764.3 +43966 chr3 HAVANA gene 57941818 57942304 487.0 + 0 ENSG00000213509.4 processed_pseudogene PPIAP16 1 OTTHUMG00000158640.1 pseudo_consens +43967 chr3 HAVANA gene 58162547 58170636 3709.0 - 0 ENSG00000244161.1 antisense FLNB-AS1 1 OTTHUMG00000159156.1 +43968 chr3 HAVANA gene 58008400 58172251 13952.0 + 0 ENSG00000136068.14 protein_coding FLNB 1 OTTHUMG00000159158.1 +43969 chr3 HAVANA gene 58174478 58178374 845.0 - 0 ENSG00000283148.1 lincRNA AC137936.1 2 OTTHUMG00000191719.1 +43970 chr3 HAVANA gene 58180009 58187495 1659.0 + 0 ENSG00000283511.1 transcribed_unitary_pseudogene AC137936.2 2 OTTHUMG00000191720.1 +43971 chr3 HAVANA gene 58192257 58214697 3148.0 - 0 ENSG00000163687.13 protein_coding DNASE1L3 1 OTTHUMG00000159153.4 +43972 chr3 HAVANA gene 58237506 58295693 3589.0 + 0 ENSG00000163686.14 protein_coding ABHD6 2 OTTHUMG00000159150.2 +43973 chr3 HAVANA gene 58306262 58318574 2119.0 + 0 ENSG00000255154.7 protein_coding HTD2 2 OTTHUMG00000166318.6 overlapping_locus +43974 chr3 HAVANA gene 58306247 58324695 8374.0 + 0 ENSG00000163684.11 protein_coding RPP14 2 OTTHUMG00000159152.2 overlapping_locus +43975 chr3 HAVANA gene 58329965 58330118 154.0 + 0 ENSG00000273493.1 lincRNA AC098479.1 2 OTTHUMG00000186496.1 +43976 chr3 HAVANA gene 58379217 58379525 309.0 - 0 ENSG00000275607.1 processed_pseudogene AC135507.2 2 OTTHUMG00000187560.1 +43977 chr3 HAVANA gene 58332880 58426126 5354.0 + 0 ENSG00000168297.15 protein_coding PXK 1 OTTHUMG00000159149.4 +43978 chr3 HAVANA gene 58428255 58428815 561.0 + 0 ENSG00000272182.1 antisense AC135507.1 2 OTTHUMG00000185735.1 +43979 chr3 HAVANA gene 58427630 58433857 4717.0 - 0 ENSG00000168291.12 protein_coding PDHB 2 OTTHUMG00000159157.1 +43980 chr3 HAVANA gene 58490830 58491291 462.0 - 0 ENSG00000272360.1 lincRNA AC116036.2 2 OTTHUMG00000185737.1 +43981 chr3 HAVANA gene 58492114 58502360 3068.0 + 0 ENSG00000168301.12 protein_coding KCTD6 1 OTTHUMG00000159161.3 +43982 chr3 HAVANA gene 58511310 58511676 367.0 + 0 ENSG00000236722.1 processed_pseudogene AC116036.1 1 OTTHUMG00000157303.1 pseudo_consens +43983 chr3 HAVANA gene 58505136 58537319 3859.0 - 0 ENSG00000168306.12 protein_coding ACOX2 1 OTTHUMG00000159154.3 +43984 chr3 HAVANA gene 58572744 58574319 350.0 + 0 ENSG00000243384.1 antisense AC119424.1 2 OTTHUMG00000159155.1 +43985 chr3 HAVANA gene 58564117 58627610 5321.0 - 0 ENSG00000168309.17 protein_coding FAM107A 1 OTTHUMG00000159159.4 +43986 chr3 HAVANA gene 58607080 58644491 1812.0 + 0 ENSG00000244383.2 antisense FAM3D-AS1 2 OTTHUMG00000159160.2 +43987 chr3 HAVANA gene 58633946 58666848 1640.0 - 0 ENSG00000198643.6 protein_coding FAM3D 2 OTTHUMG00000159148.2 +43988 chr3 HAVANA gene 58824437 59019093 2551.0 + 0 ENSG00000242428.5 antisense C3orf67-AS1 2 OTTHUMG00000159203.1 +43989 chr3 HAVANA gene 58717365 59050084 9455.0 - 0 ENSG00000163689.20 protein_coding C3orf67 1 OTTHUMG00000159151.5 +43990 chr3 HAVANA gene 59065150 59119509 681.0 + 0 ENSG00000243295.1 lincRNA AC114400.1 2 OTTHUMG00000159199.1 +43991 chr3 HAVANA gene 59380024 59388704 696.0 - 0 ENSG00000243903.1 lincRNA AC138057.1 2 OTTHUMG00000159200.1 +43992 chr3 HAVANA gene 59464330 59510678 698.0 - 0 ENSG00000242545.1 lincRNA AC126121.2 2 OTTHUMG00000159201.1 +43993 chr3 HAVANA gene 59535863 59536415 553.0 + 0 ENSG00000241804.1 processed_pseudogene AC126121.1 1 OTTHUMG00000159202.1 pseudo_consens +43994 chr3 ENSEMBL gene 59584169 59584445 277.0 + 0 ENSG00000277592.1 misc_RNA RF00017 3 +43995 chr3 ENSEMBL gene 60617805 60617870 66.0 - 0 ENSG00000281426.1 miRNA MIR548BB 3 +43996 chr3 HAVANA gene 60616822 60618079 1258.0 + 0 ENSG00000240097.1 processed_pseudogene AC104164.2 2 OTTHUMG00000158652.1 +43997 chr3 HAVANA gene 60690225 60690719 495.0 - 0 ENSG00000232407.3 processed_pseudogene PPIAP70 1 OTTHUMG00000158654.1 pseudo_consens,overlapping_locus +43998 chr3 HAVANA gene 60730055 60730644 590.0 - 0 ENSG00000225673.3 processed_pseudogene AC104164.1 1 OTTHUMG00000158655.1 pseudo_consens,overlapping_locus +43999 chr3 HAVANA gene 60732144 60732636 493.0 - 0 ENSG00000244183.1 processed_pseudogene PPIAP71 1 OTTHUMG00000158653.1 pseudo_consens,overlapping_locus +44000 chr3 ENSEMBL gene 60856389 60856605 217.0 - 0 ENSG00000212211.2 snoRNA RF00012 3 +44001 chr3 HAVANA gene 59749310 61251459 5439.0 - 0 ENSG00000189283.9 protein_coding FHIT 2 OTTHUMG00000158591.3 ncRNA_host,overlapping_locus +44002 chr3 ENSEMBL gene 61739127 61739229 103.0 - 0 ENSG00000252420.1 misc_RNA RF00019 3 +44003 chr3 HAVANA gene 61742455 61743106 652.0 - 0 ENSG00000226360.5 processed_pseudogene RPL10AP6 2 OTTHUMG00000157304.1 +44004 chr3 ENSEMBL gene 62118300 62118510 211.0 - 0 ENSG00000252184.1 snRNA RNU2-10P 3 +44005 chr3 HAVANA gene 62124204 62124608 405.0 - 0 ENSG00000237456.3 processed_pseudogene AC104849.1 1 OTTHUMG00000158659.1 pseudo_consens +44006 chr3 HAVANA gene 61561569 62297613 14629.0 + 0 ENSG00000144724.19 protein_coding PTPRG 2 OTTHUMG00000158660.1 +44007 chr3 HAVANA gene 62318973 62336213 4430.0 + 0 ENSG00000114405.10 protein_coding C3orf14 2 OTTHUMG00000158704.2 +44008 chr3 HAVANA gene 62260865 62369330 4496.0 - 0 ENSG00000241472.6 processed_transcript PTPRG-AS1 2 OTTHUMG00000158657.1 +44009 chr3 HAVANA gene 62369681 62374324 2193.0 - 0 ENSG00000153266.12 protein_coding FEZF2 2 OTTHUMG00000158705.1 +44010 chr3 HAVANA gene 62779176 62779785 610.0 - 0 ENSG00000225662.2 processed_pseudogene AC012519.1 1 OTTHUMG00000157307.2 pseudo_consens,overlapping_locus +44011 chr3 ENSEMBL gene 62796124 62796419 296.0 - 0 ENSG00000244632.3 misc_RNA RN7SL863P 3 +44012 chr3 ENSEMBL gene 62814382 62814491 110.0 + 0 ENSG00000252449.1 snRNA RNU6-139P 3 +44013 chr3 HAVANA gene 62398346 62875389 14638.0 - 0 ENSG00000163618.17 protein_coding CADPS 1 OTTHUMG00000158651.8 ncRNA_host,overlapping_locus +44014 chr3 HAVANA gene 62926371 62926882 512.0 + 0 ENSG00000226082.2 processed_pseudogene AC096915.1 1 OTTHUMG00000157308.1 pseudo_consens +44015 chr3 HAVANA gene 63096374 63097711 1338.0 - 0 ENSG00000242841.1 processed_pseudogene KRT8P35 1 OTTHUMG00000158702.1 pseudo_consens +44016 chr3 HAVANA gene 62950430 63125062 2745.0 + 0 ENSG00000244342.5 lincRNA LINC00698 2 OTTHUMG00000158701.1 +44017 chr3 HAVANA gene 63203218 63203448 231.0 - 0 ENSG00000240359.1 processed_pseudogene UBL5P3 1 OTTHUMG00000158703.1 pseudo_consens +44018 chr3 ENSEMBL gene 63545440 63545535 96.0 + 0 ENSG00000252301.1 rRNA_pseudogene RNA5SP134 3 +44019 chr3 HAVANA gene 63423596 63550051 558.0 - 0 ENSG00000241359.1 antisense SYNPR-AS1 2 OTTHUMG00000158700.1 +44020 chr3 HAVANA gene 63228315 63616921 4224.0 + 0 ENSG00000163630.10 protein_coding SYNPR 1 OTTHUMG00000158699.1 +44021 chr3 HAVANA gene 63652668 63679020 4651.0 + 0 ENSG00000188817.7 protein_coding SNTN 1 OTTHUMG00000158766.2 +44022 chr3 HAVANA gene 63741827 63827445 3606.0 - 0 ENSG00000224479.6 transcribed_unitary_pseudogene AC104162.1 1 OTTHUMG00000155878.3 +44023 chr3 HAVANA gene 63819362 63848636 1581.0 + 0 ENSG00000163632.13 protein_coding C3orf49 2 OTTHUMG00000158761.3 +44024 chr3 HAVANA gene 63860645 63861819 673.0 + 0 ENSG00000240549.2 antisense THOC7-AS1 2 OTTHUMG00000158760.2 +44025 chr3 HAVANA gene 63833870 63863903 1784.0 - 0 ENSG00000163634.11 protein_coding THOC7 2 OTTHUMG00000158767.3 +44026 chr3 HAVANA gene 63863155 63905838 5642.0 + 0 ENSG00000285399.2 bidirectional_promoter_lncRNA AC104162.2 2 OTTHUMG00000192514.1 overlapping_locus +44027 chr3 HAVANA gene 63911518 63911772 255.0 - 0 ENSG00000280620.1 antisense SCAANT1 2 OTTHUMG00000189735.1 +44028 chr3 HAVANA gene 63898399 64003453 9183.0 + 0 ENSG00000163635.18 protein_coding ATXN7 2 OTTHUMG00000192515.1 overlapping_locus +44029 chr3 HAVANA gene 63864557 64003462 9172.0 + 0 ENSG00000285258.1 protein_coding ATXN7 2 OTTHUMG00000158763.7 overlapping_locus +44030 chr3 HAVANA gene 64008082 64008692 611.0 - 0 ENSG00000271843.1 lincRNA AC012557.1 2 OTTHUMG00000185740.1 +44031 chr3 HAVANA gene 64004022 64012148 2456.0 + 0 ENSG00000239653.1 antisense PSMD6-AS2 2 OTTHUMG00000158764.1 overlapping_locus +44032 chr3 HAVANA gene 64011964 64016246 441.0 + 0 ENSG00000243410.1 antisense PSMD6-AS1 1 OTTHUMG00000158762.1 overlapping_locus +44033 chr3 HAVANA gene 64019508 64019925 418.0 + 0 ENSG00000272181.1 antisense AC012557.2 2 OTTHUMG00000185741.1 +44034 chr3 HAVANA gene 64010549 64024010 9123.0 - 0 ENSG00000163636.10 protein_coding PSMD6 2 OTTHUMG00000158765.2 +44035 chr3 ENSEMBL gene 64071807 64072019 213.0 - 0 ENSG00000200222.2 snoRNA RF00012 3 +44036 chr3 HAVANA gene 64078361 64087363 2129.0 - 0 ENSG00000189196.4 lincRNA LINC00994 2 OTTHUMG00000158790.1 +44037 chr3 HAVANA gene 64099273 64101122 709.0 + 0 ENSG00000241572.1 antisense PRICKLE2-AS1 1 OTTHUMG00000158793.1 overlapping_locus +44038 chr3 HAVANA gene 64067964 64103131 6505.0 + 0 ENSG00000241111.1 antisense PRICKLE2-AS1 2 OTTHUMG00000158788.1 overlapping_locus +44039 chr3 HAVANA gene 64103470 64106056 496.0 + 0 ENSG00000241101.1 antisense PRICKLE2-AS2 1 OTTHUMG00000158792.1 +44040 chr3 HAVANA gene 64174401 64175147 747.0 + 0 ENSG00000239926.1 processed_pseudogene PRDX3P4 1 OTTHUMG00000158794.1 pseudo_consens +44041 chr3 HAVANA gene 64187544 64200965 2496.0 + 0 ENSG00000226017.2 antisense PRICKLE2-AS3 2 OTTHUMG00000158795.1 +44042 chr3 HAVANA gene 64092242 64445476 14747.0 - 0 ENSG00000163637.12 protein_coding PRICKLE2 1 OTTHUMG00000158789.5 overlapping_locus +44043 chr3 HAVANA gene 64445231 64454832 565.0 + 0 ENSG00000244564.1 lincRNA AC096888.1 2 OTTHUMG00000158709.1 +44044 chr3 ENSEMBL gene 64511755 64511857 103.0 + 0 ENSG00000212340.1 snRNA RNU6-739P 3 +44045 chr3 HAVANA gene 64561322 64592757 6949.0 + 0 ENSG00000241158.6 processed_transcript ADAMTS9-AS1 2 OTTHUMG00000158723.6 +44046 chr3 HAVANA gene 64515654 64688000 10680.0 - 0 ENSG00000163638.13 protein_coding ADAMTS9 2 OTTHUMG00000158722.2 +44047 chr3 HAVANA gene 64684909 65053439 8246.0 + 0 ENSG00000241684.6 antisense ADAMTS9-AS2 2 OTTHUMG00000158725.3 +44048 chr3 HAVANA gene 65174958 65193499 556.0 + 0 ENSG00000243149.1 lincRNA LINC02040 2 OTTHUMG00000158734.1 +44049 chr3 HAVANA gene 65359268 65359717 450.0 - 0 ENSG00000270059.1 sense_intronic AC121493.1 2 OTTHUMG00000184087.1 overlapping_locus +44050 chr3 HAVANA gene 65687301 65688468 1168.0 + 0 ENSG00000244226.1 processed_pseudogene ILF2P1 1 OTTHUMG00000158735.1 pseudo_consens +44051 chr3 HAVANA gene 65843890 65844446 557.0 + 0 ENSG00000223409.1 processed_pseudogene RPL17P17 1 OTTHUMG00000157309.1 pseudo_consens +44052 chr3 HAVANA gene 65893816 65925297 591.0 + 0 ENSG00000240175.1 antisense MAGI1-AS1 2 OTTHUMG00000158733.1 +44053 chr3 HAVANA gene 65872815 65954558 2567.0 - 0 ENSG00000272610.1 sense_intronic MAGI1-IT1 2 OTTHUMG00000186069.1 overlapping_locus +44054 chr3 ENSEMBL gene 66003839 66003940 102.0 - 0 ENSG00000202071.1 misc_RNA RF00019 3 +44055 chr3 HAVANA gene 66008770 66009200 431.0 - 0 ENSG00000203647.2 processed_pseudogene AC106827.1 2 OTTHUMG00000186576.1 overlapping_locus +44056 chr3 HAVANA gene 65353525 66038834 11649.0 - 0 ENSG00000151276.23 protein_coding MAGI1 1 OTTHUMG00000157554.5 ncRNA_host,overlapping_locus +44057 chr3 ENSEMBL gene 66293114 66293220 107.0 - 0 ENSG00000206759.1 snRNA RNU6-787P 3 +44058 chr3 ENSEMBL gene 66323855 66324152 298.0 + 0 ENSG00000241587.3 misc_RNA RN7SL482P 3 +44059 chr3 HAVANA gene 66133610 66388116 5850.0 + 0 ENSG00000144741.17 protein_coding SLC25A26 1 OTTHUMG00000149917.6 ncRNA_host +44060 chr3 HAVANA gene 66378797 66501263 7032.0 - 0 ENSG00000144749.13 protein_coding LRIG1 2 OTTHUMG00000158727.1 +44061 chr3 HAVANA gene 66622760 66623102 343.0 - 0 ENSG00000271174.1 processed_pseudogene AC104440.1 1 OTTHUMG00000184385.1 pseudo_consens +44062 chr3 HAVANA gene 66637149 66637412 264.0 + 0 ENSG00000214560.4 processed_pseudogene RPL21P41 1 OTTHUMG00000157313.1 pseudo_consens +44063 chr3 HAVANA gene 66794041 66796921 2616.0 + 0 ENSG00000285738.1 lincRNA AC098969.1 2 OTTHUMG00000192865.1 +44064 chr3 HAVANA gene 66998307 67011210 4736.0 + 0 ENSG00000163376.11 protein_coding KBTBD8 2 OTTHUMG00000158779.2 +44065 chr3 ENSEMBL gene 67225464 67225527 64.0 + 0 ENSG00000283298.1 miRNA MIR4272 3 +44066 chr3 HAVANA gene 67296300 67306359 2110.0 + 0 ENSG00000241884.2 lincRNA AC114401.1 2 OTTHUMG00000158741.2 +44067 chr3 HAVANA gene 67513940 67514320 381.0 + 0 ENSG00000242510.1 processed_pseudogene NDUFB4P1 1 OTTHUMG00000158738.1 pseudo_consens +44068 chr3 HAVANA gene 67360460 67654614 3090.0 - 0 ENSG00000172340.14 protein_coding SUCLG2 2 OTTHUMG00000158740.1 +44069 chr3 HAVANA gene 67654697 67947713 3032.0 + 0 ENSG00000241316.7 lincRNA SUCLG2-AS1 2 OTTHUMG00000158739.3 +44070 chr3 HAVANA gene 68145004 68145630 627.0 + 0 ENSG00000214552.4 processed_pseudogene COPS8P2 1 OTTHUMG00000158747.1 pseudo_consens,overlapping_locus +44071 chr3 HAVANA gene 68192398 68192580 183.0 + 0 ENSG00000240568.1 processed_pseudogene AC107626.1 2 OTTHUMG00000158746.1 overlapping_locus +44072 chr3 HAVANA gene 68004216 68545625 2933.0 + 0 ENSG00000183662.10 protein_coding FAM19A1 2 OTTHUMG00000158745.1 overlapping_locus +44073 chr3 HAVANA gene 68633706 68634356 651.0 - 0 ENSG00000244640.1 processed_pseudogene AC096922.1 1 OTTHUMG00000157314.1 pseudo_consens +44074 chr3 HAVANA gene 68635705 68637024 1320.0 + 0 ENSG00000241506.1 processed_pseudogene PSMC1P1 1 OTTHUMG00000158743.1 pseudo_consens +44075 chr3 ENSEMBL gene 68882967 68883091 125.0 + 0 ENSG00000252828.1 rRNA_pseudogene RNA5SP135 3 +44076 chr3 HAVANA gene 68731766 68953297 3297.0 - 0 ENSG00000163377.15 protein_coding FAM19A4 2 OTTHUMG00000158744.3 +44077 chr3 HAVANA gene 68975214 69013961 5645.0 - 0 ENSG00000163378.13 protein_coding EOGT 2 OTTHUMG00000156279.3 +44078 chr3 ENSEMBL gene 69048958 69049035 78.0 - 0 ENSG00000265355.1 miRNA MIR3136 3 +44079 chr3 HAVANA gene 69019827 69052339 7911.0 - 0 ENSG00000144747.16 protein_coding TMF1 2 OTTHUMG00000158771.2 ncRNA_host +44080 chr3 HAVANA gene 69013941 69056622 3746.0 + 0 ENSG00000244513.6 antisense AC109587.1 2 OTTHUMG00000158770.3 +44081 chr3 HAVANA gene 69054730 69080408 4106.0 - 0 ENSG00000144744.16 protein_coding UBA3 2 OTTHUMG00000154325.3 +44082 chr3 HAVANA gene 69084944 69106066 2522.0 + 0 ENSG00000144746.6 protein_coding ARL6IP5 2 OTTHUMG00000158773.1 +44083 chr3 HAVANA gene 69106872 69123032 4276.0 - 0 ENSG00000163380.15 protein_coding LMOD3 2 OTTHUMG00000158774.1 +44084 chr3 HAVANA gene 69471452 69472532 1081.0 - 0 ENSG00000239263.1 processed_pseudogene RBM43P1 1 OTTHUMG00000158769.1 pseudo_consens,overlapping_locus +44085 chr3 HAVANA gene 69535664 69536693 1030.0 - 0 ENSG00000240265.1 processed_pseudogene AC099328.1 1 OTTHUMG00000158768.1 pseudo_consens,overlapping_locus +44086 chr3 HAVANA gene 69169990 69542583 9993.0 - 0 ENSG00000114541.14 protein_coding FRMD4B 2 OTTHUMG00000158772.4 overlapping_locus +44087 chr3 HAVANA gene 69564106 69571122 455.0 - 0 ENSG00000240842.1 lincRNA AC099328.2 2 OTTHUMG00000159016.1 +44088 chr3 HAVANA gene 69591341 69593121 749.0 + 0 ENSG00000241667.1 lincRNA AC104445.1 2 OTTHUMG00000159018.1 +44089 chr3 ENSEMBL gene 69769487 69769773 287.0 - 0 ENSG00000241665.3 misc_RNA RN7SL418P 3 +44090 chr3 HAVANA gene 69739435 69968337 7193.0 + 0 ENSG00000187098.15 protein_coding MITF 2 OTTHUMG00000149921.15 +44091 chr3 HAVANA gene 70125070 70126609 1540.0 - 0 ENSG00000271034.1 processed_pseudogene AC139700.1 1 OTTHUMG00000184384.1 pseudo_consens +44092 chr3 HAVANA gene 70140217 70140488 272.0 + 0 ENSG00000242728.1 processed_pseudogene UQCRHP4 1 OTTHUMG00000158799.1 pseudo_consens +44093 chr3 HAVANA gene 70196894 70312726 778.0 - 0 ENSG00000242120.3 protein_coding MDFIC2 2 OTTHUMG00000158801.3 +44094 chr3 HAVANA gene 69999550 70518064 15695.0 + 0 ENSG00000240405.6 lincRNA SAMMSON 2 OTTHUMG00000159017.3 +44095 chr3 HAVANA gene 70751123 70751350 228.0 + 0 ENSG00000240156.1 processed_pseudogene COX6CP6 1 OTTHUMG00000158802.1 pseudo_consens +44096 chr3 HAVANA gene 70753854 70754573 576.0 + 0 ENSG00000243873.1 processed_pseudogene HMGB1P36 1 OTTHUMG00000158798.1 pseudo_consens +44097 chr3 ENSEMBL gene 70808350 70808452 103.0 + 0 ENSG00000206939.1 snRNA RNU6-281P 3 +44098 chr3 HAVANA gene 71289769 71305853 700.0 + 0 ENSG00000244203.2 antisense FOXP1-AS1 2 OTTHUMG00000158800.2 +44099 chr3 ENSEMBL gene 71541970 71542089 120.0 - 0 ENSG00000221264.1 miRNA MIR1284 3 +44100 chr3 HAVANA gene 71567863 71571112 604.0 + 0 ENSG00000274387.1 antisense AC097634.2 2 OTTHUMG00000188143.1 +44101 chr3 HAVANA gene 71570255 71574457 3539.0 - 0 ENSG00000242094.1 sense_intronic FOXP1-IT1 2 OTTHUMG00000158796.1 overlapping_locus +44102 chr3 HAVANA gene 70952817 71583993 36714.0 - 0 ENSG00000114861.20 protein_coding FOXP1 1 OTTHUMG00000158803.17 ncRNA_host,overlapping_locus +44103 chr3 HAVANA gene 71584943 71587409 2467.0 + 0 ENSG00000270562.1 lincRNA AC097634.1 2 OTTHUMG00000175716.2 +44104 chr3 HAVANA gene 71581721 71628558 820.0 + 0 ENSG00000277855.1 antisense AC097634.3 2 OTTHUMG00000188144.1 +44105 chr3 HAVANA gene 70959226 71754229 3320.0 - 0 ENSG00000285708.1 protein_coding AC097634.4 2 OTTHUMG00000192624.1 ncRNA_host,overlapping_locus +44106 chr3 HAVANA gene 71675416 71754773 10779.0 - 0 ENSG00000163412.12 protein_coding EIF4E3 2 OTTHUMG00000158797.8 overlapping_locus +44107 chr3 HAVANA gene 71754050 71756496 2447.0 + 0 ENSG00000170837.2 protein_coding GPR27 2 OTTHUMG00000158810.1 +44108 chr3 HAVANA gene 71771656 71785206 1612.0 - 0 ENSG00000163421.8 protein_coding PROK2 2 OTTHUMG00000158809.1 +44109 chr3 ENSEMBL gene 71827177 71827471 295.0 + 0 ENSG00000239250.3 misc_RNA RN7SL271P 3 +44110 chr3 HAVANA gene 72006774 72006975 202.0 + 0 ENSG00000244130.1 processed_pseudogene UBE2Q2P9 1 OTTHUMG00000158787.2 pseudo_consens +44111 chr3 HAVANA gene 72061061 72069933 496.0 + 0 ENSG00000273461.5 lincRNA AC105265.3 2 OTTHUMG00000186307.1 +44112 chr3 HAVANA gene 72080564 72084641 306.0 - 0 ENSG00000276471.1 lincRNA AC105265.4 2 OTTHUMG00000188113.1 overlapping_locus +44113 chr3 HAVANA gene 72085109 72085287 179.0 + 0 ENSG00000239350.2 processed_pseudogene AC105265.1 2 OTTHUMG00000158785.2 +44114 chr3 HAVANA gene 72086888 72087725 838.0 + 0 ENSG00000242609.1 processed_pseudogene AC105265.2 1 OTTHUMG00000158786.1 pseudo_consens +44115 chr3 HAVANA gene 72178279 72178810 532.0 + 0 ENSG00000272774.1 lincRNA AC112219.2 2 OTTHUMG00000185834.1 +44116 chr3 HAVANA gene 72151257 72207770 3739.0 + 0 ENSG00000243083.6 lincRNA LINC00870 2 OTTHUMG00000159724.3 +44117 chr3 HAVANA gene 72202944 72209892 947.0 - 0 ENSG00000242618.1 lincRNA AC112219.1 1 OTTHUMG00000159723.1 overlapping_locus +44118 chr3 HAVANA gene 72035300 72279503 4878.0 - 0 ENSG00000241163.7 lincRNA LINC00877 2 OTTHUMG00000158784.4 overlapping_locus +44119 chr3 HAVANA gene 72321051 72324027 2977.0 - 0 ENSG00000260670.1 lincRNA AC134508.1 2 OTTHUMG00000175719.1 +44120 chr3 HAVANA gene 72371825 72446621 7215.0 - 0 ENSG00000163602.10 protein_coding RYBP 2 OTTHUMG00000159190.4 reference_genome_error +44121 chr3 HAVANA gene 72504806 72550552 866.0 - 0 ENSG00000244345.1 lincRNA AC104435.2 1 OTTHUMG00000159191.1 +44122 chr3 ENSEMBL gene 72576691 72576854 164.0 + 0 ENSG00000199469.1 snRNA RNU1-62P 3 +44123 chr3 HAVANA gene 72583370 72583535 166.0 + 0 ENSG00000239568.1 processed_pseudogene AC104435.1 2 OTTHUMG00000158824.1 +44124 chr3 ENSEMBL gene 72691705 72691811 107.0 - 0 ENSG00000222838.1 rRNA_pseudogene RNA5SP136 3 +44125 chr3 HAVANA gene 72772539 72773471 933.0 + 0 ENSG00000241537.1 processed_pseudogene AC134050.1 1 OTTHUMG00000158782.1 pseudo_consens +44126 chr3 HAVANA gene 72749277 72861914 5841.0 - 0 ENSG00000144736.13 protein_coding SHQ1 1 OTTHUMG00000158814.2 +44127 chr3 HAVANA gene 72876737 72878102 1366.0 - 0 ENSG00000240135.1 unprocessed_pseudogene PSMD12P 1 OTTHUMG00000158817.1 pseudo_consens +44128 chr3 HAVANA gene 72884234 72884679 446.0 + 0 ENSG00000271266.1 processed_pseudogene LAPTM4BP2 1 OTTHUMG00000184321.1 pseudo_consens +44129 chr3 ENSEMBL gene 72926955 72927237 283.0 - 0 ENSG00000276890.1 misc_RNA RF00017 3 +44130 chr3 HAVANA gene 72929044 72929593 550.0 + 0 ENSG00000242960.1 processed_pseudogene FTH1P23 1 OTTHUMG00000158783.1 pseudo_consens,overlapping_locus +44131 chr3 HAVANA gene 72888073 72998138 3667.0 + 0 ENSG00000172986.12 protein_coding GXYLT2 2 OTTHUMG00000158815.2 overlapping_locus +44132 chr3 ENSEMBL gene 73027808 73027873 66.0 + 0 ENSG00000238959.1 snRNA RNU7-19P 3 +44133 chr3 HAVANA gene 73061659 73063337 1679.0 + 0 ENSG00000255423.1 protein_coding EBLN2 2 OTTHUMG00000165897.1 overlapping_locus +44134 chr3 HAVANA gene 72996785 73069199 5964.0 + 0 ENSG00000163605.14 protein_coding PPP4R2 2 OTTHUMG00000158816.3 ncRNA_host,overlapping_locus +44135 chr3 ENSEMBL gene 73092148 73092257 110.0 - 0 ENSG00000252651.1 snRNA RNU6-557P 3 +44136 chr3 ENSEMBL gene 73110992 73111182 191.0 + 0 ENSG00000223247.1 snRNA RNU2-64P 3 +44137 chr3 HAVANA gene 73182501 73183291 791.0 - 0 ENSG00000182921.9 processed_pseudogene CCDC75P1 1 OTTHUMG00000158866.1 pseudo_consens +44138 chr3 ENSEMBL gene 73241789 73241896 108.0 - 0 ENSG00000252937.1 snRNA RNU6-1270P 3 +44139 chr3 ENSEMBL gene 73593940 73594002 63.0 - 0 ENSG00000239119.1 snRNA RNU7-119P 3 +44140 chr3 HAVANA gene 73382433 73624940 6136.0 - 0 ENSG00000121440.14 protein_coding PDZRN3 1 OTTHUMG00000158865.5 ncRNA_host +44141 chr3 HAVANA gene 73621713 73626796 1598.0 + 0 ENSG00000239677.6 antisense PDZRN3-AS1 1 OTTHUMG00000158864.5 overlapping_locus +44142 chr3 HAVANA gene 73624410 73627626 3217.0 + 0 ENSG00000278934.1 TEC AC117489.1 2 OTTHUMG00000182479.1 overlapping_locus +44143 chr3 HAVANA gene 73648399 73648807 409.0 - 0 ENSG00000242364.1 processed_pseudogene AC108725.1 1 OTTHUMG00000158837.1 pseudo_consens +44144 chr3 HAVANA gene 73808601 73902866 782.0 + 0 ENSG00000242741.1 lincRNA LINC02005 2 OTTHUMG00000158832.2 +44145 chr3 ENSEMBL gene 73959642 73959927 286.0 - 0 ENSG00000278554.1 misc_RNA RF00017 3 +44146 chr3 HAVANA gene 73999805 74005609 1371.0 + 0 ENSG00000239454.1 lincRNA LINC02047 2 OTTHUMG00000158838.1 +44147 chr3 HAVANA gene 74101349 74103553 2205.0 + 0 ENSG00000223738.3 processed_pseudogene AC016930.1 1 OTTHUMG00000158812.1 pseudo_consens +44148 chr3 HAVANA gene 74135959 74136892 934.0 + 0 ENSG00000213452.4 processed_pseudogene AKR1B1P2 1 OTTHUMG00000158811.1 pseudo_consens +44149 chr3 HAVANA gene 74262568 74521140 5109.0 - 0 ENSG00000113805.8 protein_coding CNTN3 2 OTTHUMG00000158813.1 +44150 chr3 HAVANA gene 75084155 75085237 1083.0 + 0 ENSG00000241022.1 processed_pseudogene NIPA2P2 1 OTTHUMG00000158821.1 pseudo_consens +44151 chr3 ENSEMBL gene 75182754 75183048 295.0 - 0 ENSG00000242638.3 misc_RNA RN7SL294P 3 +44152 chr3 ENSEMBL gene 75214476 75214549 74.0 + 0 ENSG00000266780.1 miRNA MIR4444-2 3 +44153 chr3 HAVANA gene 75214631 75215636 1006.0 + 0 ENSG00000213300.5 processed_pseudogene HNRNPA3P6 1 OTTHUMG00000158819.1 pseudo_consens +44154 chr3 HAVANA gene 75328549 75339071 1580.0 - 0 ENSG00000228868.3 unprocessed_pseudogene MYLKP1 2 OTTHUMG00000158822.1 +44155 chr3 HAVANA gene 75347833 75348787 955.0 - 0 ENSG00000243674.1 unprocessed_pseudogene OR7E66P 2 OTTHUMG00000158820.1 +44156 chr3 HAVANA gene 75356437 75362268 1277.0 - 0 ENSG00000179799.9 transcribed_unprocessed_pseudogene OR7E22P 1 OTTHUMG00000158823.2 pseudo_consens +44157 chr3 HAVANA gene 75370448 75371342 895.0 - 0 ENSG00000230655.3 unprocessed_pseudogene OR7E55P 1 OTTHUMG00000158818.1 pseudo_consens +44158 chr3 HAVANA gene 75384059 75391810 369.0 - 0 ENSG00000244699.1 unprocessed_pseudogene AC139453.2 2 OTTHUMG00000158856.1 +44159 chr3 HAVANA gene 75395188 75395320 133.0 + 0 ENSG00000240665.1 processed_pseudogene LSP1P2 1 OTTHUMG00000158854.1 pseudo_consens +44160 chr3 HAVANA gene 75395404 75395536 133.0 - 0 ENSG00000242953.1 processed_pseudogene AC139453.1 2 OTTHUMG00000158850.1 +44161 chr3 HAVANA gene 75415070 75422143 758.0 + 0 ENSG00000238278.3 unprocessed_pseudogene ALG1L6P 2 OTTHUMG00000158851.1 +44162 chr3 HAVANA gene 75421552 75435110 3626.0 - 0 ENSG00000244026.6 transcribed_unprocessed_pseudogene FAM86DP 2 OTTHUMG00000158855.2 +44163 chr3 HAVANA gene 75435348 75457486 1862.0 + 0 ENSG00000272690.5 lincRNA LINC02018 2 OTTHUMG00000185852.1 +44164 chr3 HAVANA gene 75446769 75491202 943.0 - 0 ENSG00000239959.1 unprocessed_pseudogene ENPP7P2 2 OTTHUMG00000158849.1 +44165 chr3 HAVANA gene 75521803 75522012 210.0 + 0 ENSG00000243794.1 processed_pseudogene SNRPCP10 2 OTTHUMG00000158853.1 +44166 chr3 HAVANA gene 75542149 75542929 781.0 - 0 ENSG00000244674.1 processed_pseudogene RPS3AP15 1 OTTHUMG00000157316.1 pseudo_consens,overlapping_locus +44167 chr3 HAVANA gene 75540049 75580199 401.0 - 0 ENSG00000272710.2 transcribed_unprocessed_pseudogene AC133041.1 2 OTTHUMG00000185853.2 overlapping_locus +44168 chr3 HAVANA gene 75590298 75590649 352.0 - 0 ENSG00000239383.1 processed_pseudogene AC108724.1 1 OTTHUMG00000158848.1 pseudo_consens +44169 chr3 HAVANA gene 75598652 75599673 1022.0 - 0 ENSG00000244222.2 unprocessed_pseudogene OR7E121P 1 OTTHUMG00000158852.2 pseudo_consens +44170 chr3 HAVANA gene 75619506 75623849 687.0 - 0 ENSG00000172971.7 unprocessed_pseudogene UNC93B3 2 OTTHUMG00000158960.1 +44171 chr3 HAVANA gene 75624899 75625188 290.0 + 0 ENSG00000282912.1 processed_pseudogene AC108724.2 2 OTTHUMG00000191476.1 +44172 chr3 ENSEMBL gene 75630763 75630858 96.0 + 0 ENSG00000283894.1 miRNA MIR1324 3 +44173 chr3 HAVANA gene 75629993 75634057 980.0 + 0 ENSG00000282511.1 unprocessed_pseudogene CLUHP10 2 OTTHUMG00000191433.1 +44174 chr3 HAVANA gene 75653561 75654773 1213.0 - 0 ENSG00000241532.1 processed_pseudogene AGGF1P3 1 OTTHUMG00000158959.1 pseudo_consens +44175 chr3 HAVANA gene 75658534 75659014 481.0 + 0 ENSG00000241622.1 processed_pseudogene RARRES2P1 1 OTTHUMG00000158964.1 pseudo_consens +44176 chr3 HAVANA gene 75664330 75667220 2078.0 + 0 ENSG00000172969.7 protein_coding FRG2C 1 OTTHUMG00000158963.1 +44177 chr3 HAVANA gene 75624275 75670156 1138.0 - 0 ENSG00000243422.2 transcribed_processed_pseudogene RPL23AP49 1 OTTHUMG00000157322.2 pseudo_consens +44178 chr3 HAVANA gene 75668931 75670185 1255.0 + 0 ENSG00000236138.4 processed_pseudogene DUX4L26 1 OTTHUMG00000158962.2 pseudo_consens +44179 chr3 HAVANA gene 75672391 75679303 3181.0 + 0 ENSG00000242516.1 lincRNA LINC00960 2 OTTHUMG00000158961.1 +44180 chr3 ENSEMBL gene 75738280 75738363 84.0 + 0 ENSG00000266396.1 miRNA MIR4273 3 +44181 chr3 HAVANA gene 75678660 75785583 7641.0 - 0 ENSG00000227124.9 protein_coding ZNF717 2 OTTHUMG00000158965.7 +44182 chr3 ENSEMBL gene 75964980 75965069 90.0 - 0 ENSG00000222883.1 misc_RNA RF00019 3 +44183 chr3 HAVANA gene 76434018 76435428 1411.0 + 0 ENSG00000240809.1 processed_pseudogene AC026877.1 1 OTTHUMG00000158861.1 pseudo_consens,overlapping_locus +44184 chr3 ENSEMBL gene 77092057 77092163 107.0 + 0 ENSG00000199520.1 snRNA RNU6-386P 3 +44185 chr3 HAVANA gene 77316752 77317598 847.0 - 0 ENSG00000213450.4 processed_pseudogene VDAC1P7 1 OTTHUMG00000158867.1 pseudo_consens +44186 chr3 HAVANA gene 75906695 77649964 16663.0 + 0 ENSG00000185008.17 protein_coding ROBO2 1 OTTHUMG00000158935.9 ncRNA_host,overlapping_locus +44187 chr3 ENSEMBL gene 77811741 77811844 104.0 - 0 ENSG00000206891.1 snRNA RNU6-217P 3 +44188 chr3 HAVANA gene 78038705 78046794 409.0 - 0 ENSG00000244461.1 lincRNA LINC02077 2 OTTHUMG00000158840.1 +44189 chr3 HAVANA gene 78087404 78092270 554.0 + 0 ENSG00000240573.1 lincRNA AC117462.1 1 OTTHUMG00000158839.1 +44190 chr3 ENSEMBL gene 78115158 78115457 300.0 + 0 ENSG00000243957.3 misc_RNA RN7SL647P 3 +44191 chr3 ENSEMBL gene 78161698 78161992 295.0 + 0 ENSG00000222574.1 misc_RNA RN7SKP61 3 +44192 chr3 HAVANA gene 78266940 78294731 1047.0 + 0 ENSG00000240241.5 lincRNA AC108752.1 1 OTTHUMG00000158945.1 +44193 chr3 HAVANA gene 78525101 78525485 385.0 + 0 ENSG00000239226.1 processed_pseudogene MRPS17P3 2 OTTHUMG00000158844.1 +44194 chr3 HAVANA gene 78758974 78759374 401.0 + 0 ENSG00000240752.1 processed_pseudogene AC055731.1 1 OTTHUMG00000157326.1 pseudo_consens +44195 chr3 ENSEMBL gene 78938009 78938292 284.0 - 0 ENSG00000240964.3 misc_RNA RN7SL751P 3 +44196 chr3 ENSEMBL gene 79507887 79507969 83.0 + 0 ENSG00000265193.1 miRNA MIR3923 3 +44197 chr3 HAVANA gene 78597240 79767815 10875.0 - 0 ENSG00000169855.19 protein_coding ROBO1 1 OTTHUMG00000158843.4 ncRNA_host +44198 chr3 HAVANA gene 79957566 79958142 577.0 - 0 ENSG00000243877.1 processed_pseudogene HMGB1P38 1 OTTHUMG00000158930.1 pseudo_consens +44199 chr3 HAVANA gene 80163327 80164795 1469.0 + 0 ENSG00000271389.1 processed_pseudogene OSBPL9P1 1 OTTHUMG00000158929.2 pseudo_consens +44200 chr3 HAVANA gene 80216261 80217234 974.0 + 0 ENSG00000239699.1 processed_pseudogene HNRNPA3P8 1 OTTHUMG00000158931.1 pseudo_consens +44201 chr3 HAVANA gene 80442081 80442305 225.0 + 0 ENSG00000242586.1 unprocessed_pseudogene AC108740.1 2 OTTHUMG00000158936.1 +44202 chr3 HAVANA gene 80761042 80788963 403.0 - 0 ENSG00000242828.1 lincRNA AC068756.1 2 OTTHUMG00000158943.1 +44203 chr3 HAVANA gene 80764897 80789354 712.0 + 0 ENSG00000242781.1 lincRNA LINC02050 2 OTTHUMG00000158944.1 +44204 chr3 HAVANA gene 80993868 81095647 596.0 + 0 ENSG00000243694.2 lincRNA LINC02027 2 OTTHUMG00000158949.1 +44205 chr3 HAVANA gene 81208193 81208914 553.0 - 0 ENSG00000242145.1 lincRNA AC099542.2 2 OTTHUMG00000158948.1 +44206 chr3 HAVANA gene 81246579 81297345 1261.0 - 0 ENSG00000241593.5 lincRNA AC099542.1 1 OTTHUMG00000158980.1 +44207 chr3 HAVANA gene 81366990 81368021 1032.0 - 0 ENSG00000244281.1 processed_pseudogene AC107302.1 1 OTTHUMG00000158979.1 pseudo_consens +44208 chr3 ENSEMBL gene 81509476 81509664 189.0 + 0 ENSG00000222389.1 snRNA RNU2-28P 3 +44209 chr3 HAVANA gene 81612238 81612805 568.0 - 0 ENSG00000241319.1 processed_pseudogene SETP6 1 OTTHUMG00000159004.1 pseudo_consens,overlapping_locus +44210 chr3 HAVANA gene 81612790 81613075 286.0 + 0 ENSG00000240404.2 processed_pseudogene AC017015.1 2 OTTHUMG00000159003.2 +44211 chr3 HAVANA gene 81489699 81762161 5171.0 - 0 ENSG00000114480.12 protein_coding GBE1 2 OTTHUMG00000158978.2 overlapping_locus +44212 chr3 HAVANA gene 81762706 81764756 376.0 - 0 ENSG00000242190.1 lincRNA AC017015.2 1 OTTHUMG00000159005.1 +44213 chr3 HAVANA gene 81840547 81922861 591.0 + 0 ENSG00000242009.1 lincRNA AC129807.1 2 OTTHUMG00000159007.1 +44214 chr3 HAVANA gene 82319172 82320279 776.0 - 0 ENSG00000241367.1 processed_pseudogene RPL7AP23 1 OTTHUMG00000157328.2 pseudo_consens +44215 chr3 HAVANA gene 81986138 82463675 2017.0 + 0 ENSG00000239440.5 lincRNA LINC02008 2 OTTHUMG00000158946.1 +44216 chr3 HAVANA gene 82806515 82808021 1507.0 - 0 ENSG00000241095.1 processed_pseudogene CYP51A1P1 1 OTTHUMG00000158947.1 pseudo_consens +44217 chr3 HAVANA gene 83937045 83938236 1192.0 + 0 ENSG00000242195.1 processed_pseudogene SRRM1P2 1 OTTHUMG00000158955.1 pseudo_consens +44218 chr3 HAVANA gene 84691681 84692591 911.0 - 0 ENSG00000241776.1 processed_pseudogene AC117482.1 1 OTTHUMG00000158977.1 pseudo_consens,overlapping_locus +44219 chr3 HAVANA gene 84638406 84881679 8031.0 - 0 ENSG00000242641.5 lincRNA LINC00971 2 OTTHUMG00000158981.2 overlapping_locus +44220 chr3 HAVANA gene 84884936 84893379 360.0 + 0 ENSG00000242339.1 lincRNA LINC02025 2 OTTHUMG00000159058.1 +44221 chr3 ENSEMBL gene 85385710 85385792 83.0 + 0 ENSG00000264084.1 miRNA MIR5688 3 +44222 chr3 HAVANA gene 85799987 85828050 768.0 - 0 ENSG00000241648.1 antisense CADM2-AS2 2 OTTHUMG00000158991.1 +44223 chr3 HAVANA gene 86012561 86015120 2267.0 + 0 ENSG00000243915.1 processed_pseudogene THAP12P2 1 OTTHUMG00000158989.1 pseudo_consens,overlapping_locus +44224 chr3 HAVANA gene 85992183 86028007 2656.0 - 0 ENSG00000239519.1 antisense CADM2-AS1 2 OTTHUMG00000158987.1 +44225 chr3 HAVANA gene 84958981 86074429 9990.0 + 0 ENSG00000175161.13 protein_coding CADM2 2 OTTHUMG00000158990.3 ncRNA_host,overlapping_locus +44226 chr3 ENSEMBL gene 86125216 86125287 72.0 + 0 ENSG00000201410.1 snoRNA RF00342 3 +44227 chr3 ENSEMBL gene 86235321 86235424 104.0 + 0 ENSG00000251773.1 snRNA RNU6-1129P 3 +44228 chr3 HAVANA gene 86264555 86267361 705.0 - 0 ENSG00000239767.1 lincRNA AC108733.1 1 OTTHUMG00000158994.1 +44229 chr3 ENSEMBL gene 86362132 86362474 343.0 + 0 ENSG00000222934.1 misc_RNA RN7SKP284 3 +44230 chr3 HAVANA gene 86481943 86496996 1321.0 + 0 ENSG00000241328.1 lincRNA LINC02070 2 OTTHUMG00000158995.1 +44231 chr3 HAVANA gene 86816740 86817036 297.0 + 0 ENSG00000277746.1 processed_pseudogene AC108706.1 2 OTTHUMG00000187562.1 +44232 chr3 HAVANA gene 86876388 86991119 12714.0 - 0 ENSG00000206538.8 protein_coding VGLL3 2 OTTHUMG00000158984.3 +44233 chr3 HAVANA gene 87051192 87052738 1547.0 - 0 ENSG00000241293.1 processed_pseudogene PPATP1 1 OTTHUMG00000158985.1 pseudo_consens +44234 chr3 HAVANA gene 87089129 87157069 5011.0 + 0 ENSG00000281392.1 lincRNA LINC00506 2 OTTHUMG00000189538.1 +44235 chr3 ENSEMBL gene 87226189 87226277 89.0 - 0 ENSG00000264119.1 miRNA MIR4795 3 +44236 chr3 HAVANA gene 87227271 87255548 3106.0 + 0 ENSG00000083937.8 protein_coding CHMP2B 1 OTTHUMG00000158982.4 +44237 chr3 HAVANA gene 87259404 87276587 1569.0 - 0 ENSG00000064835.10 protein_coding POU1F1 2 OTTHUMG00000158992.5 +44238 chr3 HAVANA gene 87323268 87324723 1456.0 + 0 ENSG00000239829.1 processed_pseudogene KRT8P25 1 OTTHUMG00000158986.1 pseudo_consens +44239 chr3 HAVANA gene 87594838 87595376 539.0 + 0 ENSG00000240902.1 processed_pseudogene APOOP2 1 OTTHUMG00000158993.1 pseudo_consens +44240 chr3 HAVANA gene 87630301 87631619 1319.0 - 0 ENSG00000240255.1 processed_pseudogene PSMC1P6 1 OTTHUMG00000159001.1 pseudo_consens +44241 chr3 ENSEMBL gene 87742543 87742649 107.0 - 0 ENSG00000200703.1 snRNA RNU6-873P 3 +44242 chr3 HAVANA gene 87641412 87793629 4256.0 - 0 ENSG00000239572.2 lincRNA AC108749.1 2 OTTHUMG00000159002.3 ncRNA_host +44243 chr3 ENSEMBL gene 87910220 87910345 126.0 + 0 ENSG00000221059.1 snRNA RNU6ATAC6P 3 +44244 chr3 HAVANA gene 87990696 87993835 3140.0 + 0 ENSG00000179097.5 protein_coding HTR1F 2 OTTHUMG00000159008.1 +44245 chr3 HAVANA gene 88095408 88095968 561.0 - 0 ENSG00000241535.1 processed_pseudogene CBX5P1 1 OTTHUMG00000159062.2 pseudo_consens,overlapping_locus +44246 chr3 HAVANA gene 88059274 88144665 6786.0 + 0 ENSG00000175105.6 protein_coding ZNF654 2 OTTHUMG00000159097.3 +44247 chr3 HAVANA gene 88051944 88149885 6490.0 - 0 ENSG00000163320.10 protein_coding CGGBP1 2 OTTHUMG00000159009.6 overlapping_locus +44248 chr3 HAVANA gene 88149743 88168729 3478.0 + 0 ENSG00000179021.9 protein_coding C3orf38 1 OTTHUMG00000155752.2 +44249 chr3 HAVANA gene 88317156 88319022 1867.0 + 0 ENSG00000242159.1 processed_pseudogene ABCF2P1 1 OTTHUMG00000159043.1 pseudo_consens +44250 chr3 ENSEMBL gene 88431191 88431309 119.0 + 0 ENSG00000207316.1 misc_RNA RF00019 3 +44251 chr3 HAVANA gene 88338413 88467562 3300.0 + 0 ENSG00000283434.1 protein_coding CSNKA2IP 2 OTTHUMG00000191768.1 ncRNA_host +44252 chr3 HAVANA gene 88601061 88601402 342.0 + 0 ENSG00000242365.1 processed_pseudogene NDUFA5P5 1 OTTHUMG00000159041.1 pseudo_consens +44253 chr3 HAVANA gene 88948142 88950928 2787.0 + 0 ENSG00000242705.1 processed_pseudogene ICE2P2 1 OTTHUMG00000159037.1 pseudo_consens +44254 chr3 HAVANA gene 89047442 89048434 993.0 - 0 ENSG00000241861.2 processed_pseudogene GAPDHP50 1 OTTHUMG00000159042.2 pseudo_consens +44255 chr3 HAVANA gene 89283016 89314603 965.0 - 0 ENSG00000285780.1 antisense AC109129.1 2 OTTHUMG00000192991.2 +44256 chr3 HAVANA gene 89107524 89482134 6674.0 + 0 ENSG00000044524.10 protein_coding EPHA3 2 OTTHUMG00000159040.1 +44257 chr3 HAVANA gene 89587886 89588570 685.0 - 0 ENSG00000240951.1 processed_pseudogene MTCO2P6 2 OTTHUMG00000159039.1 +44258 chr3 HAVANA gene 89588714 89590097 1384.0 - 0 ENSG00000240309.1 processed_pseudogene MTCO1P6 2 OTTHUMG00000159038.1 +44259 chr3 ENSEMBL gene 90030284 90030495 212.0 + 0 ENSG00000212598.2 snoRNA RF00012 3 +44260 chr3 ENSEMBL gene 90184634 90184733 100.0 + 0 ENSG00000222490.1 snRNA RNU6-712P 3 +44261 chr3 HAVANA gene 90202316 90257415 1951.0 - 0 ENSG00000189002.10 unprocessed_pseudogene PROS2P 2 OTTHUMG00000159045.1 +44262 chr3 HAVANA gene 90261414 90261708 295.0 - 0 ENSG00000271024.1 processed_pseudogene HSPE1P19 1 OTTHUMG00000184367.1 pseudo_consens +44263 chr3 ENSEMBL gene 91356755 91356914 160.0 + 0 ENSG00000283367.1 sRNA RF01699 3 +44264 chr3 HAVANA gene 91374236 91513775 838.0 - 0 ENSG00000283544.1 unprocessed_pseudogene ABBA01000935.2 2 OTTHUMG00000191870.1 +44265 chr3 ENSEMBL gene 93843764 93843862 99.0 + 0 ENSG00000251727.1 snRNA RNU6-488P 3 +44266 chr3 ENSEMBL gene 93967926 93968020 95.0 + 0 ENSG00000201339.1 misc_RNA RF00019 3 +44267 chr3 ENSEMBL gene 93977029 93977135 107.0 + 0 ENSG00000200366.1 snRNA RNU6-511P 3 +44268 chr3 HAVANA gene 93873033 93980003 5444.0 - 0 ENSG00000184500.15 protein_coding PROS1 1 OTTHUMG00000150354.6 +44269 chr3 HAVANA gene 93988634 93988946 313.0 - 0 ENSG00000239614.1 processed_pseudogene HMGN1P7 1 OTTHUMG00000159010.1 pseudo_consens +44270 chr3 HAVANA gene 94014369 94028610 1158.0 - 0 ENSG00000178750.2 protein_coding STX19 2 OTTHUMG00000159013.1 +44271 chr3 HAVANA gene 93980139 94055668 4154.0 + 0 ENSG00000169379.15 protein_coding ARL13B 2 OTTHUMG00000159012.4 +44272 chr3 HAVANA gene 94047836 94063389 4659.0 - 0 ENSG00000178700.7 protein_coding DHFR2 2 OTTHUMG00000159014.3 retrogene +44273 chr3 HAVANA gene 94075912 94077175 1264.0 - 0 ENSG00000242457.1 processed_pseudogene RBBP4P2 1 OTTHUMG00000159011.1 pseudo_consens +44274 chr3 HAVANA gene 94062916 94128545 5635.0 + 0 ENSG00000178694.9 protein_coding NSUN3 2 OTTHUMG00000159025.1 +44275 chr3 HAVANA gene 94506766 94507620 855.0 - 0 ENSG00000178660.6 processed_pseudogene ARMC10P1 2 OTTHUMG00000159019.1 +44276 chr3 HAVANA gene 94935760 94936120 361.0 - 0 ENSG00000242911.1 processed_pseudogene AC140059.1 2 OTTHUMG00000159022.1 +44277 chr3 HAVANA gene 94937086 94938024 939.0 - 0 ENSG00000234629.1 processed_pseudogene WDR82P1 1 OTTHUMG00000159020.2 pseudo_consens +44278 chr3 HAVANA gene 94938172 95152509 1879.0 + 0 ENSG00000239589.5 lincRNA LINC00879 2 OTTHUMG00000159021.2 +44279 chr3 HAVANA gene 95171920 95172377 458.0 + 0 ENSG00000244048.1 processed_pseudogene RPS18P6 1 OTTHUMG00000157329.1 pseudo_consens +44280 chr3 HAVANA gene 95654423 95683193 2709.0 - 0 ENSG00000244681.1 transcribed_processed_pseudogene MTHFD2P1 1 OTTHUMG00000159027.1 pseudo_consens +44281 chr3 HAVANA gene 96244732 96245335 296.0 - 0 ENSG00000271671.1 processed_pseudogene AC107304.1 1 OTTHUMG00000184366.1 pseudo_consens +44282 chr3 HAVANA gene 96349554 96350939 1386.0 + 0 ENSG00000243547.1 processed_pseudogene HNRNPKP4 1 OTTHUMG00000159028.1 pseudo_consens +44283 chr3 ENSEMBL gene 96359964 96360039 76.0 + 0 ENSG00000278103.1 miRNA MIR8060 3 +44284 chr3 HAVANA gene 96566357 96567103 747.0 + 0 ENSG00000241815.1 processed_pseudogene AC107015.1 1 OTTHUMG00000159029.1 pseudo_consens +44285 chr3 ENSEMBL gene 96608814 96608917 104.0 - 0 ENSG00000199286.1 snRNA RNU6-1094P 3 +44286 chr3 HAVANA gene 96617188 96618236 1049.0 - 0 ENSG00000269028.3 protein_coding MTRNR2L12 2 OTTHUMG00000175726.3 +44287 chr3 HAVANA gene 96619304 96619831 528.0 + 0 ENSG00000218754.4 processed_pseudogene RPL18AP8 1 OTTHUMG00000157331.2 pseudo_consens +44288 chr3 HAVANA gene 96753185 96754671 1487.0 + 0 ENSG00000241018.1 processed_pseudogene RCC2P5 1 OTTHUMG00000159186.1 pseudo_consens +44289 chr3 HAVANA gene 96776945 96777683 739.0 + 0 ENSG00000176243.9 processed_pseudogene CDV3P1 1 OTTHUMG00000159188.1 pseudo_consens +44290 chr3 HAVANA gene 97481177 97481506 330.0 - 0 ENSG00000251172.1 processed_pseudogene AC117470.1 1 OTTHUMG00000160108.1 pseudo_consens +44291 chr3 HAVANA gene 96814581 97752460 6291.0 + 0 ENSG00000080224.17 protein_coding EPHA6 1 OTTHUMG00000159208.8 +44292 chr3 HAVANA gene 97759523 97761532 2010.0 + 0 ENSG00000261292.2 lincRNA AC110491.1 2 OTTHUMG00000175728.2 +44293 chr3 HAVANA gene 97764521 97801242 4574.0 + 0 ENSG00000113966.9 protein_coding ARL6 1 OTTHUMG00000159189.3 +44294 chr3 HAVANA gene 97800733 97821884 460.0 - 0 ENSG00000282527.1 antisense AC110491.3 2 OTTHUMG00000191392.1 +44295 chr3 HAVANA gene 97836986 97874691 646.0 - 0 ENSG00000279658.1 antisense AC110491.2 2 OTTHUMG00000184912.2 +44296 chr3 HAVANA gene 97822040 97944963 10929.0 + 0 ENSG00000080200.9 protein_coding CRYBG3 2 OTTHUMG00000159187.3 +44297 chr3 HAVANA gene 97941818 97972457 6880.0 - 0 ENSG00000170854.17 protein_coding RIOX2 2 OTTHUMG00000160107.7 +44298 chr3 HAVANA gene 97973012 97975056 900.0 + 0 ENSG00000285614.1 lincRNA AC026100.1 2 OTTHUMG00000192762.1 +44299 chr3 HAVANA gene 97986673 98035304 5703.0 - 0 ENSG00000183185.9 protein_coding GABRR3 2 OTTHUMG00000159135.3 +44300 chr3 HAVANA gene 98053374 98053739 366.0 + 0 ENSG00000250750.1 unprocessed_pseudogene OR5BM1P 2 OTTHUMG00000160086.1 +44301 chr3 HAVANA gene 98064472 98065396 925.0 + 0 ENSG00000213439.3 polymorphic_pseudogene OR5AC1 2 OTTHUMG00000154300.3 +44302 chr3 HAVANA gene 98087173 98088102 930.0 + 0 ENSG00000196578.4 protein_coding OR5AC2 2 OTTHUMG00000160083.2 +44303 chr3 HAVANA gene 98100793 98105672 985.0 + 0 ENSG00000251090.2 transcribed_unprocessed_pseudogene OR5AC4P 2 OTTHUMG00000160069.2 +44304 chr3 HAVANA gene 98119191 98119731 541.0 + 0 ENSG00000248365.3 processed_pseudogene POU5F1P7 1 OTTHUMG00000160082.3 pseudo_consens +44305 chr3 HAVANA gene 98130721 98138548 5999.0 + 0 ENSG00000231192.2 protein_coding OR5H1 2 OTTHUMG00000160070.4 +44306 chr3 HAVANA gene 98099908 98148134 467.0 - 0 ENSG00000249225.1 antisense AC117460.1 2 OTTHUMG00000160118.1 +44307 chr3 HAVANA gene 98147479 98156614 7365.0 + 0 ENSG00000236032.3 protein_coding OR5H14 2 OTTHUMG00000160079.2 +44308 chr3 HAVANA gene 98166696 98169774 1229.0 + 0 ENSG00000233412.5 protein_coding OR5H15 2 OTTHUMG00000160076.3 +44309 chr3 HAVANA gene 98197211 98198138 928.0 + 0 ENSG00000249321.1 unprocessed_pseudogene OR5H5P 2 OTTHUMG00000160112.1 +44310 chr3 HAVANA gene 98207423 98208341 919.0 + 0 ENSG00000249975.1 unprocessed_pseudogene OR5H3P 2 OTTHUMG00000160115.1 +44311 chr3 HAVANA gene 98222044 98222966 923.0 + 0 ENSG00000248507.1 unprocessed_pseudogene OR5H4P 2 OTTHUMG00000160116.1 +44312 chr3 HAVANA gene 98238352 98239281 930.0 + 0 ENSG00000187900.4 unprocessed_pseudogene OR5H7P 2 OTTHUMG00000160117.1 +44313 chr3 HAVANA gene 98263252 98265356 1197.0 + 0 ENSG00000230301.6 protein_coding OR5H6 2 OTTHUMG00000160078.5 +44314 chr3 HAVANA gene 98282888 98283832 945.0 + 0 ENSG00000197938.5 protein_coding OR5H2 2 OTTHUMG00000160080.4 +44315 chr3 HAVANA gene 98306752 98312843 1045.0 + 0 ENSG00000232535.2 polymorphic_pseudogene OR5H8 2 OTTHUMG00000154298.4 overlapping_locus +44316 chr3 HAVANA gene 98353854 98354819 966.0 + 0 ENSG00000196098.2 protein_coding OR5K4 2 OTTHUMG00000160081.2 +44317 chr3 HAVANA gene 98390666 98391631 966.0 + 0 ENSG00000206536.1 protein_coding OR5K3 2 OTTHUMG00000160077.2 +44318 chr3 HAVANA gene 98434034 98434847 814.0 + 0 ENSG00000244653.1 processed_pseudogene UBFD1P1 1 OTTHUMG00000159797.1 pseudo_consens,overlapping_locus +44319 chr3 HAVANA gene 98233651 98457898 392.0 + 0 ENSG00000251088.1 lincRNA AC117473.1 2 OTTHUMG00000160119.1 overlapping_locus +44320 chr3 HAVANA gene 98463201 98472924 3552.0 + 0 ENSG00000232382.2 protein_coding OR5K1 2 OTTHUMG00000160048.2 +44321 chr3 HAVANA gene 98497604 98498663 1060.0 + 0 ENSG00000231861.2 protein_coding OR5K2 2 OTTHUMG00000160049.2 +44322 chr3 HAVANA gene 98497912 98523066 5217.0 - 0 ENSG00000080822.16 protein_coding CLDND1 1 OTTHUMG00000160050.19 overlapping_locus +44323 chr3 HAVANA gene 98525061 98525274 214.0 - 0 ENSG00000250562.1 processed_pseudogene RPL38P4 1 OTTHUMG00000160020.1 pseudo_consens,overlapping_locus +44324 chr3 HAVANA gene 98522570 98525334 388.0 + 0 ENSG00000248839.1 antisense AC021660.2 2 OTTHUMG00000160039.1 +44325 chr3 HAVANA gene 98531899 98533150 1252.0 + 0 ENSG00000154165.4 protein_coding GPR15 2 OTTHUMG00000160017.1 +44326 chr3 HAVANA gene 98521133 98585498 592.0 - 0 ENSG00000285635.1 protein_coding AC021660.3 2 OTTHUMG00000160016.4 overlapping_locus +44327 chr3 HAVANA gene 98579446 98593723 3232.0 - 0 ENSG00000080819.7 protein_coding CPOX 2 OTTHUMG00000193356.1 overlapping_locus +44328 chr3 HAVANA gene 98620065 98620618 554.0 + 0 ENSG00000240827.1 processed_pseudogene AC021660.1 1 OTTHUMG00000157332.1 pseudo_consens +44329 chr3 HAVANA gene 98657802 98660570 2769.0 + 0 ENSG00000244153.1 processed_pseudogene WWP1P1 1 OTTHUMG00000159795.1 pseudo_consens +44330 chr3 HAVANA gene 98714330 98732651 843.0 - 0 ENSG00000239445.5 antisense ST3GAL6-AS1 2 OTTHUMG00000159044.1 +44331 chr3 HAVANA gene 98782188 98783193 1006.0 + 0 ENSG00000249274.1 processed_pseudogene PDLIM1P4 1 OTTHUMG00000159051.1 pseudo_consens,overlapping_locus +44332 chr3 ENSEMBL gene 98804978 98805084 107.0 - 0 ENSG00000206712.1 snRNA RNU6-26P 3 +44333 chr3 HAVANA gene 98732236 98821201 6288.0 + 0 ENSG00000064225.12 protein_coding ST3GAL6 1 OTTHUMG00000159047.6 overlapping_locus +44334 chr3 HAVANA gene 98795941 98901689 11274.0 - 0 ENSG00000057019.15 protein_coding DCBLD2 1 OTTHUMG00000151985.3 ncRNA_host +44335 chr3 ENSEMBL gene 98908459 98908564 106.0 + 0 ENSG00000207331.1 snRNA RNU6-1263P 3 +44336 chr3 HAVANA gene 98981058 98983096 962.0 + 0 ENSG00000240476.1 lincRNA LINC00973 2 OTTHUMG00000159060.1 overlapping_locus +44337 chr3 ENSEMBL gene 98987387 98987449 63.0 + 0 ENSG00000275108.1 snRNA RF00066 3 +44338 chr3 HAVANA gene 98902424 99018562 395.0 + 0 ENSG00000239462.1 antisense AC091212.1 2 OTTHUMG00000159061.1 ncRNA_host,overlapping_locus +44339 chr3 HAVANA gene 99215224 99216266 1043.0 - 0 ENSG00000241305.1 processed_pseudogene ACTG1P13 1 OTTHUMG00000159398.1 pseudo_consens +44340 chr3 HAVANA gene 99326377 99326552 176.0 - 0 ENSG00000240572.1 processed_pseudogene AC107297.1 2 OTTHUMG00000159397.1 +44341 chr3 HAVANA gene 99500347 99505508 458.0 + 0 ENSG00000243296.1 lincRNA AC078828.1 2 OTTHUMG00000159412.1 +44342 chr3 HAVANA gene 99507187 99527113 465.0 - 0 ENSG00000243089.1 lincRNA AC107029.1 1 OTTHUMG00000159413.1 +44343 chr3 HAVANA gene 99598064 99623820 2305.0 + 0 ENSG00000244464.1 lincRNA AC107029.2 2 OTTHUMG00000159418.1 +44344 chr3 HAVANA gene 99638475 99799226 9408.0 + 0 ENSG00000144810.15 protein_coding COL8A1 2 OTTHUMG00000148669.3 +44345 chr3 HAVANA gene 99802699 99806058 3360.0 - 0 ENSG00000273374.1 lincRNA AC069222.1 2 OTTHUMG00000185856.1 +44346 chr3 ENSEMBL gene 99964314 99964398 85.0 - 0 ENSG00000264897.1 miRNA MIR3921 3 +44347 chr3 HAVANA gene 99830141 100114513 5903.0 - 0 ENSG00000168386.18 protein_coding FILIP1L 1 OTTHUMG00000159055.3 ncRNA_host +44348 chr3 HAVANA gene 99817834 100181732 7210.0 + 0 ENSG00000184220.11 protein_coding CMSS1 1 OTTHUMG00000159054.3 +44349 chr3 HAVANA gene 100185687 100211766 1291.0 + 0 ENSG00000235156.5 transcribed_unitary_pseudogene TMEM30CP 2 OTTHUMG00000159056.2 +44350 chr3 HAVANA gene 100221268 100223858 516.0 - 0 ENSG00000277000.1 unprocessed_pseudogene DUSP12P1 2 OTTHUMG00000187563.1 +44351 chr3 HAVANA gene 100225374 100226073 700.0 + 0 ENSG00000243974.1 processed_pseudogene VTI1BP1 1 OTTHUMG00000159057.1 pseudo_consens +44352 chr3 HAVANA gene 100261000 100325251 5168.0 + 0 ENSG00000036054.12 protein_coding TBC1D23 1 OTTHUMG00000159067.2 +44353 chr3 HAVANA gene 100334701 100361635 9264.0 + 0 ENSG00000114021.11 protein_coding NIT2 2 OTTHUMG00000159066.4 +44354 chr3 HAVANA gene 100363431 100401398 5387.0 - 0 ENSG00000154174.7 protein_coding TOMM70 2 OTTHUMG00000159065.2 +44355 chr3 HAVANA gene 100401193 100456319 2249.0 + 0 ENSG00000206535.7 protein_coding LNP1 1 OTTHUMG00000159082.1 +44356 chr3 HAVANA gene 100492619 100577444 6005.0 + 0 ENSG00000181458.10 protein_coding TMEM45A 1 OTTHUMG00000150327.4 +44357 chr3 ENSEMBL gene 100646121 100646197 77.0 + 0 ENSG00000252989.1 snoRNA RF00322 3 +44358 chr3 HAVANA gene 100665050 100665476 427.0 - 0 ENSG00000243495.1 processed_pseudogene GMFBP1 1 OTTHUMG00000159084.1 pseudo_consens +44359 chr3 HAVANA gene 100609589 100695479 4091.0 + 0 ENSG00000144820.7 protein_coding ADGRG7 1 OTTHUMG00000159083.1 ncRNA_host +44360 chr3 HAVANA gene 100709331 100748966 4994.0 + 0 ENSG00000114354.13 protein_coding TFG 2 OTTHUMG00000159085.3 +44361 chr3 HAVANA gene 100910975 100912175 1201.0 - 0 ENSG00000213431.4 processed_pseudogene AC080014.1 1 OTTHUMG00000159093.1 pseudo_consens,overlapping_locus +44362 chr3 ENSEMBL gene 100952627 100952733 107.0 + 0 ENSG00000201642.1 snRNA RNU6-865P 3 +44363 chr3 HAVANA gene 100749156 100993515 10978.0 - 0 ENSG00000154175.16 protein_coding ABI3BP 2 OTTHUMG00000159094.6 overlapping_locus +44364 chr3 HAVANA gene 101163094 101163986 893.0 + 0 ENSG00000242573.1 processed_pseudogene ACTR3P3 1 OTTHUMG00000159092.1 pseudo_consens +44365 chr3 HAVANA gene 101222546 101320560 8337.0 - 0 ENSG00000081148.11 protein_coding IMPG2 2 OTTHUMG00000159091.3 +44366 chr3 HAVANA gene 101357292 101359242 1951.0 + 0 ENSG00000241738.1 processed_pseudogene ZNF90P1 2 OTTHUMG00000159123.1 +44367 chr3 HAVANA gene 101414228 101414633 406.0 + 0 ENSG00000232830.5 processed_pseudogene AC110994.1 1 OTTHUMG00000159124.1 pseudo_consens +44368 chr3 HAVANA gene 101457241 101457732 492.0 - 0 ENSG00000282978.1 processed_pseudogene AC110994.2 1 OTTHUMG00000191507.1 pseudo_consens +44369 chr3 ENSEMBL gene 101458530 101458626 97.0 + 0 ENSG00000201554.1 misc_RNA RF00019 3 +44370 chr3 HAVANA gene 101324205 101513241 6396.0 - 0 ENSG00000138468.15 protein_coding SENP7 2 OTTHUMG00000149927.3 +44371 chr3 HAVANA gene 101521891 101522979 1089.0 + 0 ENSG00000175841.8 processed_pseudogene FAM172BP 1 OTTHUMG00000159125.1 pseudo_consens +44372 chr3 HAVANA gene 101561862 101566446 1888.0 + 0 ENSG00000174173.6 protein_coding TRMT10C 2 OTTHUMG00000159114.4 +44373 chr3 HAVANA gene 101576489 101576947 459.0 - 0 ENSG00000242299.1 processed_pseudogene AC073861.1 2 OTTHUMG00000157333.1 +44374 chr3 HAVANA gene 101574095 101594437 3102.0 + 0 ENSG00000081154.11 protein_coding PCNP 2 OTTHUMG00000159108.5 +44375 chr3 HAVANA gene 101599243 101599644 402.0 - 0 ENSG00000243396.1 processed_pseudogene AC084198.1 1 OTTHUMG00000157341.1 pseudo_consens +44376 chr3 ENSEMBL gene 101615826 101615928 103.0 + 0 ENSG00000252348.1 snRNA RNU6-1256P 3 +44377 chr3 ENSEMBL gene 101628310 101628406 97.0 - 0 ENSG00000212319.1 misc_RNA RF00019 3 +44378 chr3 ENSEMBL gene 101647421 101647522 102.0 + 0 ENSG00000201511.1 misc_RNA RF00019 3 +44379 chr3 ENSEMBL gene 101662060 101662164 105.0 - 0 ENSG00000201121.1 misc_RNA RNY1P12 3 +44380 chr3 HAVANA gene 101648889 101677495 7416.0 - 0 ENSG00000066422.4 protein_coding ZBTB11 2 OTTHUMG00000159133.4 ncRNA_host +44381 chr3 HAVANA gene 101676475 101679217 2743.0 + 0 ENSG00000256628.3 antisense ZBTB11-AS1 2 OTTHUMG00000159176.1 +44382 chr3 HAVANA gene 101681091 101686782 2682.0 - 0 ENSG00000114391.12 protein_coding RPL24 2 OTTHUMG00000159146.3 +44383 chr3 HAVANA gene 101712472 101713191 720.0 + 0 ENSG00000244119.1 processed_pseudogene PDCL3P4 1 OTTHUMG00000159184.2 pseudo_consens +44384 chr3 HAVANA gene 101723925 101770562 9550.0 + 0 ENSG00000182504.10 protein_coding CEP97 1 OTTHUMG00000159162.4 +44385 chr3 HAVANA gene 101823793 101824998 360.0 - 0 ENSG00000249474.1 antisense AC020651.1 2 OTTHUMG00000162582.1 +44386 chr3 HAVANA gene 101779202 101827392 8635.0 + 0 ENSG00000144815.15 protein_coding NXPE3 2 OTTHUMG00000159179.15 +44387 chr3 HAVANA gene 101827991 101861022 5902.0 + 0 ENSG00000144802.11 protein_coding NFKBIZ 1 OTTHUMG00000159194.18 +44388 chr3 ENSEMBL gene 101955077 101955185 109.0 + 0 ENSG00000202177.1 misc_RNA RF00019 3 +44389 chr3 HAVANA gene 101960358 101997926 2157.0 + 0 ENSG00000241280.1 lincRNA AC106712.1 2 OTTHUMG00000159237.3 overlapping_locus +44390 chr3 HAVANA gene 101940859 101997926 2051.0 + 0 ENSG00000214407.3 lincRNA LINC02085 2 OTTHUMG00000159212.1 ncRNA_host,overlapping_locus +44391 chr3 HAVANA gene 102099244 102479841 5130.0 + 0 ENSG00000170044.8 protein_coding ZPLD1 2 OTTHUMG00000159229.5 +44392 chr3 HAVANA gene 102663163 102673913 515.0 - 0 ENSG00000241754.1 lincRNA AC108748.1 2 OTTHUMG00000159096.1 +44393 chr3 ENSEMBL gene 102755064 102755170 107.0 - 0 ENSG00000201065.1 snRNA RNU6-461P 3 +44394 chr3 ENSEMBL gene 103159960 103160124 165.0 + 0 ENSG00000201922.1 snRNA RNU1-43P 3 +44395 chr3 HAVANA gene 103240987 103241230 244.0 + 0 ENSG00000236691.3 processed_pseudogene NDUFA4P2 1 OTTHUMG00000159095.1 pseudo_consens +44396 chr3 ENSEMBL gene 103524033 103524116 84.0 - 0 ENSG00000265328.1 miRNA MIR548AB 3 +44397 chr3 HAVANA gene 103538635 103540487 1853.0 - 0 ENSG00000240107.1 processed_pseudogene AC046144.1 1 OTTHUMG00000159181.1 pseudo_consens +44398 chr3 HAVANA gene 103630661 103630912 252.0 + 0 ENSG00000243195.1 processed_pseudogene TUBBP11 2 OTTHUMG00000159180.1 +44399 chr3 HAVANA gene 104063039 104063582 544.0 + 0 ENSG00000214405.3 processed_pseudogene RAP1BP2 1 OTTHUMG00000159183.1 pseudo_consens +44400 chr3 HAVANA gene 104502700 104503266 567.0 + 0 ENSG00000243635.1 processed_pseudogene AC091804.1 1 OTTHUMG00000159182.1 pseudo_consens +44401 chr3 HAVANA gene 105366909 105576900 7179.0 + 0 ENSG00000170017.12 protein_coding ALCAM 1 OTTHUMG00000159192.2 +44402 chr3 HAVANA gene 105655461 105869552 11840.0 - 0 ENSG00000114423.20 protein_coding CBLB 1 OTTHUMG00000150654.18 +44403 chr3 HAVANA gene 106325737 106326293 557.0 - 0 ENSG00000244652.1 processed_pseudogene AC079382.1 1 OTTHUMG00000159136.1 pseudo_consens +44404 chr3 ENSEMBL gene 106515897 106515998 102.0 + 0 ENSG00000200610.1 misc_RNA RF00019 3 +44405 chr3 ENSEMBL gene 106688678 106688779 102.0 + 0 ENSG00000200361.1 misc_RNA RF00019 3 +44406 chr3 HAVANA gene 106848671 106849260 590.0 + 0 ENSG00000239997.1 processed_pseudogene FCF1P3 1 OTTHUMG00000159139.1 pseudo_consens +44407 chr3 HAVANA gene 106894352 106895718 1367.0 - 0 ENSG00000241787.1 unprocessed_pseudogene MTND4P16 2 OTTHUMG00000159166.1 overlapping_locus +44408 chr3 HAVANA gene 106895729 106896408 276.0 - 0 ENSG00000239632.1 unprocessed_pseudogene MTND4LP3 2 OTTHUMG00000159165.1 overlapping_locus +44409 chr3 HAVANA gene 106896483 106896821 339.0 - 0 ENSG00000242214.1 unprocessed_pseudogene MTND3P6 2 OTTHUMG00000159164.1 overlapping_locus +44410 chr3 HAVANA gene 106896891 106897671 781.0 - 0 ENSG00000242836.1 unprocessed_pseudogene MTCO3P35 2 OTTHUMG00000159147.2 overlapping_locus +44411 chr3 HAVANA gene 106897671 106898268 598.0 - 0 ENSG00000249580.1 unprocessed_pseudogene MTATP6P22 2 OTTHUMG00000159145.1 overlapping_locus +44412 chr3 HAVANA gene 106898889 106900591 1703.0 + 0 ENSG00000243658.1 unprocessed_pseudogene MTND5P16 2 OTTHUMG00000159140.1 +44413 chr3 HAVANA gene 106900593 106900855 263.0 - 0 ENSG00000240034.1 unprocessed_pseudogene MTND6P6 2 OTTHUMG00000159144.1 overlapping_locus +44414 chr3 HAVANA gene 106900854 106901081 228.0 - 0 ENSG00000250630.1 unprocessed_pseudogene MTCO1P35 2 OTTHUMG00000159143.1 overlapping_locus +44415 chr3 HAVANA gene 106901068 106901965 898.0 + 0 ENSG00000239586.1 unprocessed_pseudogene MTND1P16 2 OTTHUMG00000159141.1 +44416 chr3 HAVANA gene 106902173 106902523 351.0 + 0 ENSG00000240796.1 unprocessed_pseudogene MTND2P14 2 OTTHUMG00000159142.1 +44417 chr3 ENSEMBL gene 107007568 107007670 103.0 + 0 ENSG00000252626.1 snRNA RNU6-1308P 3 +44418 chr3 HAVANA gene 107104911 107107000 1776.0 - 0 ENSG00000239455.1 processed_pseudogene AC074043.1 1 OTTHUMG00000159167.1 pseudo_consens,overlapping_locus +44419 chr3 HAVANA gene 106836811 107240641 3882.0 - 0 ENSG00000242759.6 lincRNA LINC00882 1 OTTHUMG00000159196.2 overlapping_locus +44420 chr3 HAVANA gene 107240692 107326964 4206.0 + 0 ENSG00000243701.5 lincRNA DUBR 2 OTTHUMG00000159173.1 +44421 chr3 HAVANA gene 107327830 107329197 1368.0 - 0 ENSG00000241218.1 processed_pseudogene AC063944.2 1 OTTHUMG00000159168.1 pseudo_consens,overlapping_locus +44422 chr3 HAVANA gene 107329430 107329962 533.0 + 0 ENSG00000272597.1 lincRNA AC063944.3 2 OTTHUMG00000185877.1 +44423 chr3 HAVANA gene 107377194 107378637 1444.0 + 0 ENSG00000138483.2 protein_coding CCDC54 2 OTTHUMG00000159169.1 +44424 chr3 HAVANA gene 107272611 107421304 3310.0 - 0 ENSG00000239828.6 lincRNA AC063944.1 2 OTTHUMG00000159172.3 overlapping_locus +44425 chr3 HAVANA gene 107430930 107463912 1487.0 + 0 ENSG00000273125.1 lincRNA LINC01990 2 OTTHUMG00000185878.1 +44426 chr3 HAVANA gene 107522936 107811324 11877.0 + 0 ENSG00000114439.18 protein_coding BBX 1 OTTHUMG00000150360.3 +44427 chr3 HAVANA gene 107840228 107882000 4547.0 - 0 ENSG00000241469.7 lincRNA LINC00635 2 OTTHUMG00000159195.4 +44428 chr3 HAVANA gene 107834586 107928907 1443.0 + 0 ENSG00000240423.2 lincRNA LINC00636 1 OTTHUMG00000159197.2 +44429 chr3 HAVANA gene 108031003 108032261 1259.0 - 0 ENSG00000284828.1 TEC AC012020.2 2 OTTHUMG00000192358.1 +44430 chr3 HAVANA gene 108036718 108038445 1728.0 - 0 ENSG00000279277.1 TEC AC012020.1 2 OTTHUMG00000175746.1 +44431 chr3 HAVANA gene 108043094 108091862 8225.0 - 0 ENSG00000196776.15 protein_coding CD47 2 OTTHUMG00000044216.3 +44432 chr3 HAVANA gene 108125821 108138610 2592.0 + 0 ENSG00000271856.1 lincRNA LINC01215 2 OTTHUMG00000185591.1 +44433 chr3 HAVANA gene 108160812 108222570 3766.0 - 0 ENSG00000114446.4 protein_coding IFT57 1 OTTHUMG00000159223.2 +44434 chr3 HAVANA gene 108325520 108326814 924.0 - 0 ENSG00000243188.1 unprocessed_pseudogene HNRNPA1P17 1 OTTHUMG00000159225.1 pseudo_consens +44435 chr3 HAVANA gene 108296490 108378285 3627.0 + 0 ENSG00000114455.13 protein_coding HHLA2 1 OTTHUMG00000159224.5 +44436 chr3 HAVANA gene 108380369 108529322 7694.0 - 0 ENSG00000144821.9 protein_coding MYH15 2 OTTHUMG00000159226.2 +44437 chr3 HAVANA gene 108543367 108543875 509.0 - 0 ENSG00000241634.1 processed_pseudogene AC069499.1 1 OTTHUMG00000157344.1 pseudo_consens +44438 chr3 ENSEMBL gene 108574565 108574698 134.0 + 0 ENSG00000202379.1 snoRNA RF00156 3 +44439 chr3 HAVANA gene 108574683 108575064 382.0 + 0 ENSG00000276763.1 processed_pseudogene AC069499.2 2 OTTHUMG00000187565.1 +44440 chr3 HAVANA gene 108549869 108589644 4579.0 - 0 ENSG00000163507.13 protein_coding CIP2A 2 OTTHUMG00000159233.2 +44441 chr3 HAVANA gene 108589682 108694846 6972.0 + 0 ENSG00000198919.12 protein_coding DZIP3 2 OTTHUMG00000159232.6 +44442 chr3 HAVANA gene 108725440 108725536 97.0 - 0 ENSG00000241777.1 unprocessed_pseudogene AC092185.1 2 OTTHUMG00000159394.1 +44443 chr3 HAVANA gene 108743424 108757384 1106.0 - 0 ENSG00000163515.6 protein_coding RETNLB 2 OTTHUMG00000159393.1 +44444 chr3 HAVANA gene 108822698 108855005 2528.0 + 0 ENSG00000163519.13 protein_coding TRAT1 1 OTTHUMG00000159198.1 +44445 chr3 HAVANA gene 108907792 108953895 1180.0 - 0 ENSG00000138472.10 protein_coding GUCA1C 2 OTTHUMG00000159204.2 +44446 chr3 ENSEMBL gene 109018909 109019116 208.0 - 0 ENSG00000221633.2 snoRNA RF00012 3 +44447 chr3 HAVANA gene 109101456 109110342 564.0 + 0 ENSG00000239314.1 antisense MORC1-AS1 2 OTTHUMG00000159211.1 +44448 chr3 HAVANA gene 108958239 109118142 3764.0 - 0 ENSG00000114487.9 protein_coding MORC1 1 OTTHUMG00000159209.2 ncRNA_host +44449 chr3 HAVANA gene 109118252 109150514 2547.0 + 0 ENSG00000241224.7 protein_coding C3orf85 2 OTTHUMG00000159205.5 +44450 chr3 HAVANA gene 109176438 109177365 928.0 - 0 ENSG00000261364.1 lincRNA AC063923.2 2 OTTHUMG00000175747.1 +44451 chr3 HAVANA gene 109178143 109216965 3613.0 + 0 ENSG00000214381.5 processed_transcript LINC00488 2 OTTHUMG00000159206.2 +44452 chr3 ENSEMBL gene 109225129 109225227 99.0 + 0 ENSG00000252889.1 snRNA RNU6-1236P 3 +44453 chr3 HAVANA gene 109241507 109243125 1619.0 + 0 ENSG00000239288.1 processed_pseudogene AC063923.1 1 OTTHUMG00000159207.1 pseudo_consens +44454 chr3 ENSEMBL gene 109295239 109295498 260.0 + 0 ENSG00000277635.1 misc_RNA RF00017 3 +44455 chr3 HAVANA gene 109293788 109316517 1383.0 - 0 ENSG00000163530.4 protein_coding DPPA2 2 OTTHUMG00000159227.1 +44456 chr3 HAVANA gene 109326141 109337572 4996.0 - 0 ENSG00000121570.12 protein_coding DPPA4 1 OTTHUMG00000159222.3 +44457 chr3 HAVANA gene 109364047 109364234 188.0 - 0 ENSG00000241257.1 processed_pseudogene AC124945.1 2 OTTHUMG00000159218.1 +44458 chr3 HAVANA gene 109396616 109397870 949.0 + 0 ENSG00000244561.1 processed_pseudogene AC092905.1 1 OTTHUMG00000159214.1 pseudo_consens +44459 chr3 HAVANA gene 109409678 109410084 407.0 - 0 ENSG00000230618.3 processed_pseudogene H3F3AP3 1 OTTHUMG00000159215.1 pseudo_consens +44460 chr3 HAVANA gene 109471329 109471812 484.0 - 0 ENSG00000244196.1 processed_pseudogene PPIAP15 1 OTTHUMG00000159216.1 pseudo_consens +44461 chr3 HAVANA gene 109409990 109495167 2618.0 + 0 ENSG00000228980.3 lincRNA LINC01205 2 OTTHUMG00000159217.1 +44462 chr3 ENSEMBL gene 109602828 109602897 70.0 + 0 ENSG00000265956.1 miRNA MIR4445 3 +44463 chr3 HAVANA gene 109701456 109702218 763.0 - 0 ENSG00000271249.1 processed_pseudogene DIMT1P1 1 OTTHUMG00000184360.1 pseudo_consens +44464 chr3 HAVANA gene 109648107 109810861 262.0 + 0 ENSG00000242029.1 lincRNA AC078980.1 2 OTTHUMG00000159213.2 +44465 chr3 HAVANA gene 109915976 109916940 618.0 - 0 ENSG00000214380.4 processed_pseudogene AC068781.1 1 OTTHUMG00000159219.1 pseudo_consens +44466 chr3 HAVANA gene 109977540 109977767 228.0 - 0 ENSG00000243945.1 processed_pseudogene AC078918.1 1 OTTHUMG00000159220.1 pseudo_consens +44467 chr3 HAVANA gene 110527482 110529582 801.0 - 0 ENSG00000240895.1 lincRNA AC117430.1 2 OTTHUMG00000159221.1 +44468 chr3 ENSEMBL gene 110551845 110551965 121.0 - 0 ENSG00000221206.1 snRNA RNU6ATAC15P 3 +44469 chr3 HAVANA gene 110682286 110683154 869.0 - 0 ENSG00000244722.1 processed_pseudogene RPSAP29 1 OTTHUMG00000157345.1 pseudo_consens +44470 chr3 ENSEMBL gene 110727021 110727121 101.0 + 0 ENSG00000201426.1 misc_RNA RF00019 3 +44471 chr3 HAVANA gene 110888384 110893476 1363.0 - 0 ENSG00000206532.2 lincRNA AC117402.1 1 OTTHUMG00000159242.1 +44472 chr3 HAVANA gene 110893708 111071553 1665.0 - 0 ENSG00000242242.5 antisense NECTIN3-AS1 2 OTTHUMG00000159244.1 +44473 chr3 HAVANA gene 111070071 111275563 6184.0 + 0 ENSG00000177707.10 protein_coding NECTIN3 1 OTTHUMG00000159239.3 +44474 chr3 HAVANA gene 111478737 111478943 207.0 + 0 ENSG00000244142.1 processed_pseudogene ATP6V0CP2 2 OTTHUMG00000159243.1 overlapping_locus +44475 chr3 HAVANA gene 111466313 111497095 411.0 - 0 ENSG00000239311.1 lincRNA AC092916.1 2 OTTHUMG00000159241.1 +44476 chr3 HAVANA gene 111570638 111571054 417.0 - 0 ENSG00000240787.1 processed_pseudogene AC092916.2 2 OTTHUMG00000159276.1 +44477 chr3 HAVANA gene 111592900 111595443 2311.0 - 0 ENSG00000177494.5 protein_coding ZBED2 2 OTTHUMG00000074061.2 +44478 chr3 HAVANA gene 111633672 111635089 959.0 + 0 ENSG00000244720.1 processed_pseudogene AC055748.1 1 OTTHUMG00000159278.1 pseudo_consens,overlapping_locus +44479 chr3 HAVANA gene 111292719 111665750 5762.0 + 0 ENSG00000153283.12 protein_coding CD96 2 OTTHUMG00000159275.6 overlapping_locus +44480 chr3 HAVANA gene 111676736 111677433 491.0 - 0 ENSG00000240766.1 antisense PLCXD2-AS1 1 OTTHUMG00000159277.1 +44481 chr3 HAVANA gene 111674676 111846447 8974.0 + 0 ENSG00000240891.7 protein_coding PLCXD2 1 OTTHUMG00000159279.4 overlapping_locus +44482 chr3 HAVANA gene 111732497 111976517 12309.0 + 0 ENSG00000144824.20 protein_coding PHLDB2 1 OTTHUMG00000159282.3 overlapping_locus +44483 chr3 HAVANA gene 111979010 111993363 3021.0 + 0 ENSG00000144827.8 protein_coding ABHD10 2 OTTHUMG00000159280.1 +44484 chr3 HAVANA gene 111998664 112013887 1791.0 + 0 ENSG00000144834.13 protein_coding TAGLN3 1 OTTHUMG00000159281.3 +44485 chr3 HAVANA gene 112030931 112031649 477.0 - 0 ENSG00000239439.1 processed_pseudogene RFKP2 1 OTTHUMG00000159228.1 pseudo_consens +44486 chr3 HAVANA gene 112034843 112081269 3050.0 + 0 ENSG00000176040.13 protein_coding TMPRSS7 1 OTTHUMG00000157148.2 +44487 chr3 ENSEMBL gene 112112801 112112898 98.0 + 0 ENSG00000207940.1 miRNA MIR567 3 +44488 chr3 HAVANA gene 112086335 112131004 6021.0 + 0 ENSG00000114529.12 protein_coding C3orf52 2 OTTHUMG00000159230.2 ncRNA_host +44489 chr3 HAVANA gene 112120841 112133305 3783.0 - 0 ENSG00000174500.12 protein_coding GCSAM 1 OTTHUMG00000159231.4 +44490 chr3 HAVANA gene 112133423 112135359 1937.0 + 0 ENSG00000261488.1 antisense TBILA 2 OTTHUMG00000175748.1 +44491 chr3 HAVANA gene 112185480 112185998 519.0 - 0 ENSG00000244144.1 processed_pseudogene AC128688.1 1 OTTHUMG00000159238.1 pseudo_consens,overlapping_locus +44492 chr3 HAVANA gene 112140887 112294258 4250.0 - 0 ENSG00000172139.14 protein_coding SLC9C1 2 OTTHUMG00000159245.3 overlapping_locus +44493 chr3 HAVANA gene 112321140 112321443 304.0 + 0 ENSG00000283669.1 unitary_pseudogene AC112487.2 2 OTTHUMG00000191816.1 +44494 chr3 HAVANA gene 112302478 112332791 1262.0 + 0 ENSG00000239482.6 lincRNA AC112487.1 2 OTTHUMG00000159246.2 overlapping_locus +44495 chr3 HAVANA gene 112332347 112362812 2991.0 + 0 ENSG00000091972.18 protein_coding CD200 1 OTTHUMG00000159248.3 overlapping_locus +44496 chr3 HAVANA gene 112396647 112409134 1563.0 - 0 ENSG00000243081.2 lincRNA AC092894.1 2 OTTHUMG00000159250.2 +44497 chr3 HAVANA gene 112463968 112499561 3697.0 - 0 ENSG00000186265.9 protein_coding BTLA 2 OTTHUMG00000159255.2 +44498 chr3 HAVANA gene 112524187 112525201 1015.0 - 0 ENSG00000242525.1 unprocessed_pseudogene OR7E100P 1 OTTHUMG00000159249.1 pseudo_consens +44499 chr3 HAVANA gene 112525548 112528142 2595.0 - 0 ENSG00000279349.1 TEC AC092692.1 2 OTTHUMG00000175752.1 +44500 chr3 HAVANA gene 112532509 112562046 6111.0 - 0 ENSG00000144848.10 protein_coding ATG3 2 OTTHUMG00000159260.21 +44501 chr3 HAVANA gene 112561709 112585577 4853.0 + 0 ENSG00000138459.8 protein_coding SLC35A5 2 OTTHUMG00000159263.2 +44502 chr3 HAVANA gene 112596794 112649530 13071.0 - 0 ENSG00000091986.15 protein_coding CCDC80 1 OTTHUMG00000159265.4 +44503 chr3 HAVANA gene 112696908 112697706 159.0 - 0 ENSG00000242308.2 unprocessed_pseudogene AC048334.1 2 OTTHUMG00000159266.3 +44504 chr3 HAVANA gene 112736447 112749319 2022.0 - 0 ENSG00000240893.1 lincRNA LINC02042 2 OTTHUMG00000159320.1 +44505 chr3 HAVANA gene 112802478 112812819 770.0 + 0 ENSG00000242770.2 processed_transcript AC092892.1 2 OTTHUMG00000159267.2 +44506 chr3 HAVANA gene 112815709 112846856 1710.0 - 0 ENSG00000206531.10 protein_coding CD200R1L 1 OTTHUMG00000159283.2 +44507 chr3 HAVANA gene 112921209 112975122 3905.0 - 0 ENSG00000163606.10 protein_coding CD200R1 2 OTTHUMG00000159298.1 +44508 chr3 HAVANA gene 112990447 112991153 707.0 - 0 ENSG00000272844.1 antisense AC074044.1 2 OTTHUMG00000185925.2 +44509 chr3 HAVANA gene 112990918 113015060 3826.0 + 0 ENSG00000163607.15 protein_coding GTPBP8 1 OTTHUMG00000159268.4 +44510 chr3 HAVANA gene 113002440 113019861 6494.0 - 0 ENSG00000163608.14 protein_coding NEPRO 1 OTTHUMG00000159286.6 +44511 chr3 HAVANA gene 113041390 113041814 425.0 - 0 ENSG00000243483.1 processed_pseudogene AC078785.3 1 OTTHUMG00000159324.2 pseudo_consens +44512 chr3 HAVANA gene 113050912 113063443 1253.0 - 0 ENSG00000241219.1 lincRNA AC078785.2 2 OTTHUMG00000159262.2 +44513 chr3 HAVANA gene 113142350 113167819 2502.0 - 0 ENSG00000243795.1 lincRNA LINC02044 2 OTTHUMG00000159355.1 +44514 chr3 HAVANA gene 113019532 113183301 2002.0 + 0 ENSG00000240057.5 antisense AC078785.1 2 OTTHUMG00000159327.4 +44515 chr3 HAVANA gene 113211003 113287459 10330.0 + 0 ENSG00000144857.14 protein_coding BOC 1 OTTHUMG00000159305.22 +44516 chr3 HAVANA gene 113360267 113361319 1053.0 + 0 ENSG00000240751.1 processed_pseudogene AC026348.1 1 OTTHUMG00000159269.2 pseudo_consens +44517 chr3 ENSEMBL gene 113432118 113432200 83.0 - 0 ENSG00000275670.1 miRNA MIR8076 3 +44518 chr3 HAVANA gene 113403991 113433992 1023.0 + 0 ENSG00000243849.1 antisense CFAP44-AS1 2 OTTHUMG00000159300.1 +44519 chr3 HAVANA gene 113286947 113441610 12143.0 - 0 ENSG00000206530.10 protein_coding CFAP44 2 OTTHUMG00000193413.1 ncRNA_host +44520 chr3 HAVANA gene 113361901 113515151 6837.0 - 0 ENSG00000285943.1 protein_coding AC112128.1 2 OTTHUMG00000159259.28 ncRNA_host,overlapping_locus +44521 chr3 HAVANA gene 113442718 113515187 7941.0 - 0 ENSG00000163611.11 protein_coding SPICE1 2 OTTHUMG00000159261.17 +44522 chr3 HAVANA gene 113588748 113590189 465.0 - 0 ENSG00000239453.1 antisense SIDT1-AS1 2 OTTHUMG00000150326.7 +44523 chr3 ENSEMBL gene 113594876 113594942 67.0 + 0 ENSG00000265253.1 miRNA MIR4446 3 +44524 chr3 HAVANA gene 113532296 113629578 8060.0 + 0 ENSG00000072858.10 protein_coding SIDT1 2 OTTHUMG00000159299.1 ncRNA_host +44525 chr3 ENSEMBL gene 113632704 113632998 295.0 + 0 ENSG00000241529.3 misc_RNA RN7SL767P 3 +44526 chr3 HAVANA gene 113648385 113696646 13738.0 - 0 ENSG00000176542.9 protein_coding USF3 1 OTTHUMG00000159322.4 +44527 chr3 HAVANA gene 113740823 113741254 432.0 - 0 ENSG00000239280.1 processed_pseudogene AC108693.1 1 OTTHUMG00000159296.1 pseudo_consens,overlapping_locus +44528 chr3 HAVANA gene 113716460 113746300 6436.0 - 0 ENSG00000121579.12 protein_coding NAA50 2 OTTHUMG00000159294.3 overlapping_locus +44529 chr3 HAVANA gene 113746872 113747408 303.0 - 0 ENSG00000242659.1 lincRNA AC108693.2 2 OTTHUMG00000159297.1 +44530 chr3 HAVANA gene 113747019 113812056 5130.0 + 0 ENSG00000114573.9 protein_coding ATP6V1A 2 OTTHUMG00000159295.2 +44531 chr3 HAVANA gene 113850237 113850731 495.0 - 0 ENSG00000240776.1 processed_pseudogene AC079944.1 1 OTTHUMG00000157350.1 pseudo_consens +44532 chr3 HAVANA gene 113885298 113886031 734.0 + 0 ENSG00000241889.1 processed_pseudogene AC079944.2 1 OTTHUMG00000159339.1 pseudo_consens,overlapping_locus +44533 chr3 HAVANA gene 113919222 113920200 979.0 + 0 ENSG00000240375.1 processed_pseudogene VPS26AP1 1 OTTHUMG00000159341.1 pseudo_consens,overlapping_locus +44534 chr3 HAVANA gene 113828182 113947174 7814.0 + 0 ENSG00000178075.19 protein_coding GRAMD1C 1 OTTHUMG00000159340.4 overlapping_locus +44535 chr3 HAVANA gene 113947005 113947570 566.0 - 0 ENSG00000273394.1 antisense AC128687.2 2 OTTHUMG00000185930.1 +44536 chr3 HAVANA gene 113947901 113965401 7138.0 + 0 ENSG00000184307.14 protein_coding ZDHHC23 1 OTTHUMG00000159335.3 +44537 chr3 HAVANA gene 113984037 113984655 619.0 + 0 ENSG00000270880.1 processed_pseudogene AC128687.1 1 OTTHUMG00000184315.1 pseudo_consens +44538 chr3 HAVANA gene 113998782 114016261 1325.0 + 0 ENSG00000285836.1 antisense AC092896.2 2 OTTHUMG00000193306.1 +44539 chr3 HAVANA gene 113964137 114056613 5303.0 - 0 ENSG00000163617.10 protein_coding CCDC191 2 OTTHUMG00000159337.4 +44540 chr3 HAVANA gene 114005833 114088422 8054.0 + 0 ENSG00000151576.10 protein_coding QTRT2 1 OTTHUMG00000159336.3 +44541 chr3 HAVANA gene 114103249 114103628 380.0 - 0 ENSG00000240912.1 processed_pseudogene AC092896.1 1 OTTHUMG00000159338.1 pseudo_consens +44542 chr3 HAVANA gene 114128652 114199407 2101.0 - 0 ENSG00000151577.12 protein_coding DRD3 2 OTTHUMG00000159334.3 +44543 chr3 HAVANA gene 114231398 114233021 1624.0 - 0 ENSG00000240487.1 processed_pseudogene AC093010.1 1 OTTHUMG00000159330.1 pseudo_consens +44544 chr3 HAVANA gene 114214313 114236204 3101.0 + 0 ENSG00000241490.1 antisense AC093010.2 2 OTTHUMG00000159333.1 +44545 chr3 HAVANA gene 114234631 114237578 2948.0 - 0 ENSG00000174255.6 protein_coding ZNF80 2 OTTHUMG00000159332.2 +44546 chr3 HAVANA gene 114276913 114310288 6091.0 + 0 ENSG00000181847.11 protein_coding TIGIT 2 OTTHUMG00000159331.2 +44547 chr3 ENSEMBL gene 114316475 114316569 95.0 - 0 ENSG00000284134.1 miRNA MIR568 3 +44548 chr3 HAVANA gene 114314501 114329714 15214.0 - 0 ENSG00000259976.3 3prime_overlapping_ncRNA AC093010.3 2 OTTHUMG00000175755.2 ncRNA_host,overlapping_locus +44549 chr3 HAVANA gene 114351811 114388978 2035.0 + 0 ENSG00000241560.5 antisense ZBTB20-AS1 1 OTTHUMG00000159368.1 +44550 chr3 HAVANA gene 114445521 114529452 1855.0 + 0 ENSG00000242290.2 lincRNA ZBTB20-AS5 2 OTTHUMG00000159367.2 +44551 chr3 HAVANA gene 114684580 114687609 372.0 + 0 ENSG00000241295.1 lincRNA ZBTB20-AS2 2 OTTHUMG00000159363.1 +44552 chr3 ENSEMBL gene 114743445 114743525 81.0 - 0 ENSG00000264623.3 miRNA MIR4796 3 +44553 chr3 HAVANA gene 114873114 114876514 464.0 + 0 ENSG00000239946.1 lincRNA ZBTB20-AS3 1 OTTHUMG00000159365.1 +44554 chr3 HAVANA gene 114930541 114931449 909.0 + 0 ENSG00000240002.1 processed_pseudogene YBX1P3 1 OTTHUMG00000159369.1 pseudo_consens +44555 chr3 HAVANA gene 115100423 115103061 675.0 + 0 ENSG00000242767.1 lincRNA ZBTB20-AS4 2 OTTHUMG00000159364.1 +44556 chr3 HAVANA gene 114314501 115147271 31872.0 - 0 ENSG00000181722.16 protein_coding ZBTB20 1 OTTHUMG00000159366.4 ncRNA_host,overlapping_locus +44557 chr3 HAVANA gene 115279125 115279860 736.0 + 0 ENSG00000244157.1 processed_pseudogene EIF4E2P2 1 OTTHUMG00000159302.1 pseudo_consens,overlapping_locus +44558 chr3 HAVANA gene 115251196 115285347 533.0 + 0 ENSG00000242880.1 lincRNA AC046136.1 2 OTTHUMG00000159303.1 overlapping_locus +44559 chr3 HAVANA gene 115658533 115661279 562.0 + 0 ENSG00000241596.1 sense_intronic AC092468.1 2 OTTHUMG00000159304.1 overlapping_locus +44560 chr3 HAVANA gene 115623324 115721490 2087.0 + 0 ENSG00000172020.12 protein_coding GAP43 1 OTTHUMG00000133758.2 overlapping_locus +44561 chr3 ENSEMBL gene 115837870 115838159 290.0 + 0 ENSG00000243359.3 misc_RNA RN7SL815P 3 +44562 chr3 HAVANA gene 116360024 116370090 553.0 + 0 ENSG00000240922.1 antisense LSAMP-AS1 2 OTTHUMG00000159307.2 +44563 chr3 HAVANA gene 116552473 116568264 223.0 + 0 ENSG00000241397.1 antisense LINC00903 2 OTTHUMG00000159325.1 +44564 chr3 ENSEMBL gene 116582552 116582830 279.0 - 0 ENSG00000241156.3 misc_RNA RN7SL582P 3 +44565 chr3 HAVANA gene 116645902 116646727 826.0 - 0 ENSG00000198406.7 processed_pseudogene BZW1P2 1 OTTHUMG00000159328.2 pseudo_consens,overlapping_locus +44566 chr3 ENSEMBL gene 116716460 116716624 165.0 + 0 ENSG00000278072.1 misc_RNA RF01879 3 +44567 chr3 HAVANA gene 116709235 116723581 3324.0 + 0 ENSG00000243197.7 antisense TUSC7 2 OTTHUMG00000159329.5 ncRNA_host +44568 chr3 ENSEMBL gene 116850277 116850367 91.0 - 0 ENSG00000265433.1 miRNA MIR4447 3 +44569 chr3 ENSEMBL gene 116921328 116921479 152.0 + 0 ENSG00000274732.1 misc_RNA RF01884 3 +44570 chr3 HAVANA gene 116921431 116932238 1452.0 + 0 ENSG00000242385.1 antisense LINC00901 2 OTTHUMG00000159347.2 +44571 chr3 ENSEMBL gene 116965112 116965227 116.0 - 0 ENSG00000200372.1 snRNA RNU5E-8P 3 +44572 chr3 HAVANA gene 117026698 117027039 342.0 + 0 ENSG00000243014.1 processed_pseudogene PTMAP8 2 OTTHUMG00000159348.2 +44573 chr3 HAVANA gene 115802363 117139389 10330.0 - 0 ENSG00000185565.11 protein_coding LSAMP 2 OTTHUMG00000159308.6 ncRNA_host,overlapping_locus +44574 chr3 ENSEMBL gene 117544205 117544311 107.0 + 0 ENSG00000206889.1 snRNA RNU6-1200P 3 +44575 chr3 HAVANA gene 117674342 117675144 803.0 - 0 ENSG00000240393.1 processed_pseudogene AC092691.2 1 OTTHUMG00000159343.1 pseudo_consens,overlapping_locus +44576 chr3 HAVANA gene 117678693 117690932 969.0 - 0 ENSG00000241213.1 lincRNA LINC02024 2 OTTHUMG00000159344.1 overlapping_locus +44577 chr3 HAVANA gene 117790673 117793765 510.0 + 0 ENSG00000242816.1 lincRNA AC092691.3 1 OTTHUMG00000159345.1 +44578 chr3 HAVANA gene 117672154 117997592 554.0 - 0 ENSG00000239268.2 lincRNA AC092691.1 2 OTTHUMG00000159530.1 overlapping_locus +44579 chr3 HAVANA gene 118004819 118557668 1069.0 - 0 ENSG00000243276.5 lincRNA AC068633.1 2 OTTHUMG00000159346.3 +44580 chr3 HAVANA gene 118943073 118948241 1604.0 + 0 ENSG00000239877.2 antisense IGSF11-AS1 2 OTTHUMG00000159386.2 +44581 chr3 HAVANA gene 118900557 119146068 4899.0 - 0 ENSG00000144847.12 protein_coding IGSF11 1 OTTHUMG00000159387.4 +44582 chr3 HAVANA gene 119146150 119160042 1964.0 + 0 ENSG00000163424.8 protein_coding C3orf30 1 OTTHUMG00000159349.3 overlapping_locus +44583 chr3 HAVANA gene 119147375 119187807 246.0 + 0 ENSG00000251012.2 protein_coding AC083800.1 2 OTTHUMG00000160109.4 overlapping_locus +44584 chr3 HAVANA gene 119173517 119205153 2266.0 + 0 ENSG00000114638.7 protein_coding UPK1B 1 OTTHUMG00000159354.3 overlapping_locus +44585 chr3 HAVANA gene 119211732 119241103 7145.0 - 0 ENSG00000121578.12 protein_coding B4GALT4 1 OTTHUMG00000159358.17 +44586 chr3 HAVANA gene 119226486 119290666 544.0 + 0 ENSG00000240254.1 antisense B4GALT4-AS1 2 OTTHUMG00000159385.2 +44587 chr3 HAVANA gene 119298665 119299012 348.0 + 0 ENSG00000242829.1 processed_pseudogene RPS26P21 1 OTTHUMG00000157351.1 pseudo_consens,overlapping_locus +44588 chr3 HAVANA gene 119314293 119322760 624.0 - 0 ENSG00000241155.1 antisense ARHGAP31-AS1 2 OTTHUMG00000159360.2 +44589 chr3 ENSEMBL gene 119341834 119341940 107.0 - 0 ENSG00000207310.1 snRNA RNU6-1127P 3 +44590 chr3 HAVANA gene 119294373 119420714 9384.0 + 0 ENSG00000031081.10 protein_coding ARHGAP31 2 OTTHUMG00000159362.4 overlapping_locus +44591 chr3 HAVANA gene 119429500 119468830 5333.0 - 0 ENSG00000176142.12 protein_coding TMEM39A 1 OTTHUMG00000159361.30 +44592 chr3 HAVANA gene 119468938 119494708 7097.0 + 0 ENSG00000163389.11 protein_coding POGLUT1 2 OTTHUMG00000159379.7 +44593 chr3 HAVANA gene 119497678 119498181 504.0 - 0 ENSG00000272662.1 lincRNA AC073352.1 2 OTTHUMG00000185933.1 +44594 chr3 HAVANA gene 119498532 119525090 2730.0 + 0 ENSG00000113845.9 protein_coding TIMMDC1 1 OTTHUMG00000159388.14 +44595 chr3 HAVANA gene 119524293 119559602 3201.0 - 0 ENSG00000121594.11 protein_coding CD80 2 OTTHUMG00000159419.1 +44596 chr3 HAVANA gene 119579212 119579650 439.0 - 0 ENSG00000272967.1 antisense AC073352.2 2 OTTHUMG00000185934.1 +44597 chr3 HAVANA gene 119579268 119589945 4615.0 + 0 ENSG00000144843.11 protein_coding ADPRH 2 OTTHUMG00000159420.2 +44598 chr3 HAVANA gene 119597842 119629811 2202.0 + 0 ENSG00000144837.8 protein_coding PLA1A 1 OTTHUMG00000159425.5 +44599 chr3 HAVANA gene 119635526 119636150 625.0 - 0 ENSG00000242052.1 processed_pseudogene RPL10P7 1 OTTHUMG00000157355.1 pseudo_consens +44600 chr3 HAVANA gene 119636457 119665324 2445.0 - 0 ENSG00000121577.13 protein_coding POPDC2 1 OTTHUMG00000159438.3 overlapping_locus +44601 chr3 HAVANA gene 119654513 119677454 2172.0 - 0 ENSG00000138495.6 protein_coding COX17 1 OTTHUMG00000159433.3 overlapping_locus +44602 chr3 HAVANA gene 119744139 119750350 266.0 - 0 ENSG00000239994.2 antisense AC069444.1 2 OTTHUMG00000159421.2 +44603 chr3 HAVANA gene 119703022 119767102 7106.0 + 0 ENSG00000183833.16 protein_coding MAATS1 2 OTTHUMG00000193414.1 +44604 chr3 HAVANA gene 119791829 119792553 725.0 + 0 ENSG00000240471.1 processed_pseudogene PHBP8 1 OTTHUMG00000159405.1 pseudo_consens,overlapping_locus +44605 chr3 HAVANA gene 119703076 119807570 2670.0 + 0 ENSG00000285585.1 protein_coding AC069444.2 2 OTTHUMG00000159422.3 overlapping_locus +44606 chr3 HAVANA gene 119780484 119818485 5381.0 + 0 ENSG00000144852.17 protein_coding NR1I2 2 OTTHUMG00000159400.2 overlapping_locus +44607 chr3 HAVANA gene 120028740 120029868 1129.0 + 0 ENSG00000239835.1 processed_pseudogene AC092910.1 1 OTTHUMG00000159402.1 pseudo_consens +44608 chr3 HAVANA gene 120041190 120041537 348.0 + 0 ENSG00000241546.1 processed_pseudogene AC092910.2 1 OTTHUMG00000159403.1 pseudo_consens +44609 chr3 HAVANA gene 119821323 120094417 8006.0 - 0 ENSG00000082701.15 protein_coding GSK3B 2 OTTHUMG00000133765.7 +44610 chr3 ENSEMBL gene 120110498 120110786 289.0 - 0 ENSG00000244308.2 misc_RNA RN7SL762P 3 +44611 chr3 ENSEMBL gene 120121909 120122206 298.0 + 0 ENSG00000244139.3 misc_RNA RN7SL397P 3 +44612 chr3 HAVANA gene 120094895 120136783 2194.0 + 0 ENSG00000242622.1 lincRNA AC092910.3 1 OTTHUMG00000159401.1 ncRNA_host +44613 chr3 ENSEMBL gene 120210320 120210421 102.0 + 0 ENSG00000206721.1 misc_RNA RF00019 3 +44614 chr3 HAVANA gene 120164645 120285094 6058.0 - 0 ENSG00000175697.10 protein_coding GPR156 2 OTTHUMG00000159406.1 +44615 chr3 HAVANA gene 120306726 120307952 1227.0 + 0 ENSG00000240882.1 processed_pseudogene AC063952.2 1 OTTHUMG00000159408.1 pseudo_consens +44616 chr3 HAVANA gene 120324509 120349339 7903.0 - 0 ENSG00000163428.3 protein_coding LRRC58 2 OTTHUMG00000159407.1 +44617 chr3 HAVANA gene 120365993 120368326 825.0 - 0 ENSG00000282950.1 lincRNA AC063952.4 2 OTTHUMG00000191603.1 +44618 chr3 HAVANA gene 120388029 120389315 308.0 + 0 ENSG00000242613.1 processed_pseudogene AC063952.3 1 OTTHUMG00000159439.1 pseudo_consens +44619 chr3 ENSEMBL gene 120395668 120395729 62.0 - 0 ENSG00000284121.1 miRNA MIR198 3 +44620 chr3 HAVANA gene 120349449 120423826 4265.0 + 0 ENSG00000240661.3 transcribed_unitary_pseudogene AC063952.1 1 OTTHUMG00000159404.3 +44621 chr3 HAVANA gene 120392293 120451253 8727.0 - 0 ENSG00000163430.11 protein_coding FSTL1 2 OTTHUMG00000159440.2 ncRNA_host +44622 chr3 HAVANA gene 120484171 120484527 357.0 - 0 ENSG00000240774.1 processed_pseudogene AC126182.1 1 OTTHUMG00000159664.1 pseudo_consens +44623 chr3 HAVANA gene 120512850 120513188 339.0 + 0 ENSG00000244441.1 processed_pseudogene AC126182.2 1 OTTHUMG00000157356.1 pseudo_consens +44624 chr3 HAVANA gene 120596309 120602500 1889.0 + 0 ENSG00000065518.7 protein_coding NDUFB4 2 OTTHUMG00000159442.1 +44625 chr3 HAVANA gene 120628173 120682571 2983.0 - 0 ENSG00000113924.11 protein_coding HGD 1 OTTHUMG00000159441.3 +44626 chr3 HAVANA gene 120722024 120722311 288.0 + 0 ENSG00000240452.1 unprocessed_pseudogene MTCO1P29 2 OTTHUMG00000159663.1 +44627 chr3 HAVANA gene 120722458 120722646 189.0 + 0 ENSG00000243257.1 unprocessed_pseudogene MTCO2P29 2 OTTHUMG00000159665.1 +44628 chr3 HAVANA gene 120686681 120742993 4684.0 - 0 ENSG00000144840.9 protein_coding RABL3 2 OTTHUMG00000159668.2 +44629 chr3 HAVANA gene 120742637 120783069 3370.0 + 0 ENSG00000153767.9 protein_coding GTF2E1 2 OTTHUMG00000159667.3 +44630 chr3 HAVANA gene 120805866 120806745 880.0 + 0 ENSG00000213371.4 processed_pseudogene NAP1L1P3 1 OTTHUMG00000159666.1 pseudo_consens +44631 chr3 HAVANA gene 120833440 120836360 747.0 - 0 ENSG00000243593.1 lincRNA LINC02049 2 OTTHUMG00000159469.1 +44632 chr3 HAVANA gene 120924612 120925158 201.0 - 0 ENSG00000270782.1 processed_pseudogene AC072026.1 2 OTTHUMG00000184359.1 +44633 chr3 ENSEMBL gene 121049640 121049715 76.0 + 0 ENSG00000264477.1 miRNA MIR5682 3 +44634 chr3 HAVANA gene 121099108 121099774 667.0 + 0 ENSG00000243813.1 processed_pseudogene AC078857.1 2 OTTHUMG00000159468.1 overlapping_locus +44635 chr3 HAVANA gene 121356991 121357940 950.0 + 0 ENSG00000242103.1 processed_pseudogene AC079841.1 1 OTTHUMG00000159467.1 pseudo_consens,overlapping_locus +44636 chr3 HAVANA gene 120908072 121424761 11085.0 + 0 ENSG00000145087.12 protein_coding STXBP5L 2 OTTHUMG00000159426.4 ncRNA_host,overlapping_locus +44637 chr3 HAVANA gene 121494110 121494908 799.0 + 0 ENSG00000242445.1 processed_pseudogene RPL7AP11 1 OTTHUMG00000157358.1 pseudo_consens +44638 chr3 HAVANA gene 121431427 121546641 9400.0 - 0 ENSG00000051341.13 protein_coding POLQ 2 OTTHUMG00000159396.1 +44639 chr3 HAVANA gene 121570704 121586634 992.0 + 0 ENSG00000186103.3 protein_coding ARGFX 2 OTTHUMG00000159395.2 +44640 chr3 HAVANA gene 121593119 121630295 5929.0 + 0 ENSG00000163833.7 protein_coding FBXO40 2 OTTHUMG00000159410.2 +44641 chr3 ENSEMBL gene 121653994 121654296 303.0 - 0 ENSG00000243544.3 misc_RNA RN7SL172P 3 +44642 chr3 ENSEMBL gene 121655475 121655604 130.0 - 0 ENSG00000222057.1 snRNA RNU4-62P 3 +44643 chr3 HAVANA gene 121631399 121660927 5093.0 - 0 ENSG00000180353.10 protein_coding HCLS1 2 OTTHUMG00000159409.2 ncRNA_host +44644 chr3 HAVANA gene 121663199 121749767 11865.0 - 0 ENSG00000173230.15 protein_coding GOLGB1 2 OTTHUMG00000159411.2 +44645 chr3 HAVANA gene 121769763 121835079 3049.0 - 0 ENSG00000173226.16 protein_coding IQCB1 2 OTTHUMG00000128677.7 +44646 chr3 HAVANA gene 121835183 121886526 1770.0 + 0 ENSG00000145088.8 protein_coding EAF2 1 OTTHUMG00000159424.1 +44647 chr3 HAVANA gene 121894089 121944102 6210.0 + 0 ENSG00000163406.10 protein_coding SLC15A2 2 OTTHUMG00000159423.3 +44648 chr3 HAVANA gene 121987323 122022258 3006.0 - 0 ENSG00000145103.13 protein_coding ILDR1 2 OTTHUMG00000159481.4 +44649 chr3 ENSEMBL gene 122025195 122025304 110.0 - 0 ENSG00000202388.1 misc_RNA RF00019 3 +44650 chr3 HAVANA gene 122055366 122121139 3433.0 + 0 ENSG00000114013.15 protein_coding CD86 2 OTTHUMG00000159482.3 +44651 chr3 HAVANA gene 122183683 122291629 10625.0 + 0 ENSG00000036828.16 protein_coding CASR 2 OTTHUMG00000159491.5 +44652 chr3 HAVANA gene 122317609 122318741 1133.0 + 0 ENSG00000240236.1 processed_pseudogene HNRNPA1P23 1 OTTHUMG00000159493.1 pseudo_consens +44653 chr3 HAVANA gene 122325244 122341972 1373.0 + 0 ENSG00000121552.3 protein_coding CSTA 2 OTTHUMG00000159488.1 +44654 chr3 HAVANA gene 122359591 122383231 1746.0 - 0 ENSG00000160124.9 protein_coding CCDC58 2 OTTHUMG00000159490.1 +44655 chr3 HAVANA gene 122384176 122412334 3793.0 + 0 ENSG00000114023.15 protein_coding FAM162A 1 OTTHUMG00000159494.1 +44656 chr3 HAVANA gene 122412332 122416051 3720.0 - 0 ENSG00000196981.3 protein_coding WDR5B 2 OTTHUMG00000159489.1 retrogene +44657 chr3 HAVANA gene 122416882 122417012 131.0 - 0 ENSG00000242531.1 unprocessed_pseudogene AC083798.1 2 OTTHUMG00000159492.1 +44658 chr3 HAVANA gene 122416207 122443180 2891.0 + 0 ENSG00000272758.5 antisense AC083798.2 2 OTTHUMG00000185942.1 +44659 chr3 HAVANA gene 122482990 122483229 240.0 + 0 ENSG00000275348.1 processed_pseudogene AC096861.1 2 OTTHUMG00000187569.1 +44660 chr3 HAVANA gene 122421949 122514945 8451.0 - 0 ENSG00000114030.12 protein_coding KPNA1 2 OTTHUMG00000159487.2 +44661 chr3 HAVANA gene 122527924 122564577 8938.0 - 0 ENSG00000138496.16 protein_coding PARP9 1 OTTHUMG00000159522.3 +44662 chr3 HAVANA gene 122564238 122575203 5868.0 + 0 ENSG00000163840.9 protein_coding DTX3L 1 OTTHUMG00000159524.2 +44663 chr3 HAVANA gene 122577602 122639047 5507.0 + 0 ENSG00000173200.12 protein_coding PARP15 2 OTTHUMG00000159523.3 +44664 chr3 HAVANA gene 122660613 122662438 1826.0 + 0 ENSG00000243918.1 processed_pseudogene EIF4BP8 1 OTTHUMG00000159551.1 pseudo_consens +44665 chr3 HAVANA gene 122680618 122730840 10495.0 + 0 ENSG00000173193.14 protein_coding PARP14 2 OTTHUMG00000159552.5 +44666 chr3 HAVANA gene 122740003 122793824 5434.0 - 0 ENSG00000169087.10 protein_coding HSPBAP1 2 OTTHUMG00000159550.1 +44667 chr3 HAVANA gene 122794795 122881139 3596.0 + 0 ENSG00000138463.8 protein_coding DIRC2 2 OTTHUMG00000159553.2 +44668 chr3 HAVANA gene 122886941 122892416 5476.0 + 0 ENSG00000273033.2 lincRNA LINC02035 2 OTTHUMG00000185944.2 +44669 chr3 HAVANA gene 122909082 123028605 8517.0 - 0 ENSG00000082684.15 protein_coding SEMA5B 2 OTTHUMG00000140392.4 +44670 chr3 ENSEMBL gene 123161794 123161879 86.0 + 0 ENSG00000284421.1 miRNA MIR7110 3 +44671 chr3 HAVANA gene 123067062 123225227 4030.0 + 0 ENSG00000065485.19 protein_coding PDIA5 1 OTTHUMG00000159558.3 ncRNA_host,overlapping_locus +44672 chr3 HAVANA gene 123201927 123274130 4698.0 + 0 ENSG00000121542.11 protein_coding SEC22A 2 OTTHUMG00000159495.16 overlapping_locus +44673 chr3 HAVANA gene 123277353 123277904 552.0 + 0 ENSG00000273454.1 lincRNA AC112503.2 2 OTTHUMG00000185945.1 +44674 chr3 HAVANA gene 123283593 123283983 391.0 + 0 ENSG00000272678.1 antisense AC112503.1 2 OTTHUMG00000185946.1 +44675 chr3 HAVANA gene 123282296 123449758 8873.0 - 0 ENSG00000173175.14 protein_coding ADCY5 1 OTTHUMG00000159517.6 +44676 chr3 HAVANA gene 123490820 123585185 5351.0 - 0 ENSG00000206527.9 protein_coding HACD2 1 OTTHUMG00000159529.5 +44677 chr3 HAVANA gene 123585542 123644568 980.0 + 0 ENSG00000239523.5 antisense MYLK-AS1 2 OTTHUMG00000159536.2 +44678 chr3 HAVANA gene 123689644 123692407 827.0 + 0 ENSG00000250174.5 antisense MYLK-AS2 2 OTTHUMG00000159965.1 +44679 chr3 HAVANA gene 123715851 123716399 549.0 + 0 ENSG00000273123.1 antisense AC020634.1 2 OTTHUMG00000185948.1 +44680 chr3 ENSEMBL gene 123814077 123814207 131.0 + 0 ENSG00000207002.1 snoRNA RF00392 3 +44681 chr3 HAVANA gene 123610049 123884331 22167.0 - 0 ENSG00000065534.18 protein_coding MYLK 1 OTTHUMG00000141304.13 +44682 chr3 HAVANA gene 123897305 123961408 11423.0 - 0 ENSG00000175455.14 protein_coding CCDC14 1 OTTHUMG00000153005.22 +44683 chr3 HAVANA gene 123968521 123992178 4518.0 - 0 ENSG00000065371.17 protein_coding ROPN1 1 OTTHUMG00000159556.9 +44684 chr3 ENSEMBL gene 124132929 124133025 97.0 + 0 ENSG00000266383.1 miRNA MIR5002 3 +44685 chr3 HAVANA gene 124151960 124153063 712.0 - 0 ENSG00000240622.1 processed_pseudogene RPL7P15 1 OTTHUMG00000157359.1 pseudo_consens +44686 chr3 ENSEMBL gene 124374332 124374437 106.0 + 0 ENSG00000276656.1 miRNA MIR6083 3 +44687 chr3 ENSEMBL gene 124407691 124407783 93.0 + 0 ENSG00000252751.1 snRNA RNU6-143P 3 +44688 chr3 HAVANA gene 124723788 124726325 2538.0 + 0 ENSG00000260391.2 sense_overlapping AC022336.2 2 OTTHUMG00000175759.2 overlapping_locus +44689 chr3 HAVANA gene 124080023 124726325 24490.0 + 0 ENSG00000160145.15 protein_coding KALRN 1 OTTHUMG00000125545.14 ncRNA_host,overlapping_locus +44690 chr3 ENSEMBL gene 124732439 124732516 78.0 + 0 ENSG00000265981.1 miRNA MIR544B 3 +44691 chr3 HAVANA gene 124733418 124733754 337.0 - 0 ENSG00000242199.1 processed_pseudogene AC022336.1 1 OTTHUMG00000157361.1 pseudo_consens +44692 chr3 HAVANA gene 124730366 124749273 7579.0 + 0 ENSG00000114491.13 protein_coding UMPS 2 OTTHUMG00000159431.4 ncRNA_host +44693 chr3 HAVANA gene 124781155 124787757 460.0 + 0 ENSG00000244286.1 antisense ITGB5-AS1 2 OTTHUMG00000159559.1 +44694 chr3 ENSEMBL gene 124792319 124792562 244.0 - 0 ENSG00000276626.1 misc_RNA RF00100 3 +44695 chr3 HAVANA gene 124791119 124793104 1986.0 - 0 ENSG00000280042.1 TEC AC022336.3 2 OTTHUMG00000177472.1 ncRNA_host,overlapping_locus +44696 chr3 HAVANA gene 124862094 124863317 1224.0 - 0 ENSG00000243986.2 processed_pseudogene ENO1P3 1 OTTHUMG00000159521.2 pseudo_consens,overlapping_locus +44697 chr3 HAVANA gene 124761948 124901418 6447.0 - 0 ENSG00000082781.11 protein_coding ITGB5 1 OTTHUMG00000159432.9 ncRNA_host,overlapping_locus +44698 chr3 HAVANA gene 124905442 124953819 3499.0 - 0 ENSG00000173702.7 protein_coding MUC13 2 OTTHUMG00000159484.5 +44699 chr3 HAVANA gene 124965710 125055958 9925.0 - 0 ENSG00000173706.13 protein_coding HEG1 1 OTTHUMG00000159486.4 +44700 chr3 ENSEMBL gene 125058304 125058438 135.0 - 0 ENSG00000252642.1 rRNA_pseudogene RNA5SP137 3 +44701 chr3 ENSEMBL gene 125119097 125119200 104.0 - 0 ENSG00000199327.1 snRNA RNU6-230P 3 +44702 chr3 ENSEMBL gene 125151465 125151552 88.0 - 0 ENSG00000264986.1 miRNA MIR5092 3 +44703 chr3 HAVANA gene 125082636 125212864 5586.0 - 0 ENSG00000221955.10 protein_coding SLC12A8 1 OTTHUMG00000159483.10 ncRNA_host +44704 chr3 HAVANA gene 125310881 125311350 470.0 + 0 ENSG00000229048.5 processed_pseudogene DUTP1 1 OTTHUMG00000159443.1 pseudo_consens +44705 chr3 HAVANA gene 125344085 125344797 713.0 - 0 ENSG00000243508.1 processed_pseudogene AC108688.1 1 OTTHUMG00000159444.1 pseudo_consens,overlapping_locus +44706 chr3 HAVANA gene 125225561 125375354 10574.0 - 0 ENSG00000163848.19 protein_coding ZNF148 1 OTTHUMG00000159448.5 overlapping_locus +44707 chr3 ENSEMBL gene 125388934 125388997 64.0 + 0 ENSG00000252953.1 snRNA RNU6-232P 3 +44708 chr3 ENSEMBL gene 125516979 125517086 108.0 + 0 ENSG00000201800.1 misc_RNA RF00019 3 +44709 chr3 HAVANA gene 125446644 125520197 2709.0 - 0 ENSG00000114520.10 protein_coding SNX4 2 OTTHUMG00000159575.3 +44710 chr3 ENSEMBL gene 125528244 125528349 106.0 - 0 ENSG00000252965.1 misc_RNA RF00019 3 +44711 chr3 HAVANA gene 125528858 125595090 4191.0 - 0 ENSG00000144909.7 protein_coding OSBPL11 2 OTTHUMG00000159571.1 +44712 chr3 HAVANA gene 125679573 125679781 209.0 + 0 ENSG00000243072.1 processed_pseudogene AF186996.3 2 OTTHUMG00000159570.1 +44713 chr3 HAVANA gene 125681305 125681453 149.0 + 0 ENSG00000242001.1 processed_pseudogene AF186996.2 2 OTTHUMG00000159568.1 +44714 chr3 HAVANA gene 125703349 125704312 964.0 + 0 ENSG00000234458.4 unprocessed_pseudogene OR7E130P 1 OTTHUMG00000159572.1 pseudo_consens +44715 chr3 HAVANA gene 125712139 125713045 907.0 + 0 ENSG00000243429.1 unprocessed_pseudogene OR7E29P 1 OTTHUMG00000159569.1 pseudo_consens +44716 chr3 HAVANA gene 125724539 125725445 907.0 + 0 ENSG00000228963.3 unprocessed_pseudogene OR7E93P 1 OTTHUMG00000159574.1 pseudo_consens +44717 chr3 HAVANA gene 125734295 125735198 904.0 + 0 ENSG00000239978.1 unprocessed_pseudogene OR7E53P 1 OTTHUMG00000159565.1 pseudo_consens +44718 chr3 HAVANA gene 125747084 125748098 1015.0 + 0 ENSG00000179170.11 unprocessed_pseudogene OR7E97P 1 OTTHUMG00000159566.1 pseudo_consens +44719 chr3 HAVANA gene 125756086 125756462 377.0 + 0 ENSG00000239432.1 processed_pseudogene AF186996.1 1 OTTHUMG00000159564.1 pseudo_consens +44720 chr3 HAVANA gene 125766601 125766818 218.0 + 0 ENSG00000284660.1 transcribed_unprocessed_pseudogene AC092902.6 2 OTTHUMG00000192234.1 overlapping_locus +44721 chr3 HAVANA gene 125787888 125788146 259.0 - 0 ENSG00000239804.1 processed_pseudogene AC092902.1 1 OTTHUMG00000157368.1 pseudo_consens +44722 chr3 ENSEMBL gene 125790404 125790552 149.0 - 0 ENSG00000221737.1 miRNA MIR548I1 3 +44723 chr3 HAVANA gene 125795106 125795885 780.0 + 0 ENSG00000242229.1 processed_pseudogene RPS3AP14 1 OTTHUMG00000157370.1 pseudo_consens,overlapping_locus +44724 chr3 HAVANA gene 125774714 125797953 373.0 + 0 ENSG00000272840.1 lincRNA AC092902.3 2 OTTHUMG00000185972.1 overlapping_locus +44725 chr3 HAVANA gene 125816082 125816286 205.0 - 0 ENSG00000241346.1 processed_pseudogene SNRPCP11 2 OTTHUMG00000159573.1 +44726 chr3 HAVANA gene 125766516 125852936 4236.0 + 0 ENSG00000284624.1 processed_transcript AC092902.5 2 OTTHUMG00000192233.1 overlapping_locus +44727 chr3 HAVANA gene 125848223 125909372 1086.0 + 0 ENSG00000241278.1 transcribed_unprocessed_pseudogene ENPP7P4 2 OTTHUMG00000159567.2 overlapping_locus +44728 chr3 HAVANA gene 125907765 125916360 1034.0 - 0 ENSG00000248787.2 lincRNA AC092903.2 2 OTTHUMG00000162648.2 +44729 chr3 HAVANA gene 125827238 125916384 6732.0 - 0 ENSG00000241288.7 processed_transcript AC092902.2 2 OTTHUMG00000159585.5 +44730 chr3 HAVANA gene 125916620 125930024 2519.0 + 0 ENSG00000171084.15 transcribed_unprocessed_pseudogene FAM86JP 2 OTTHUMG00000159586.1 +44731 chr3 HAVANA gene 125929275 125937039 843.0 - 0 ENSG00000189366.9 protein_coding ALG1L 2 OTTHUMG00000159588.1 +44732 chr3 HAVANA gene 125958556 125958817 262.0 + 0 ENSG00000241439.1 processed_pseudogene AC092903.1 1 OTTHUMG00000159590.1 pseudo_consens +44733 chr3 HAVANA gene 125969144 125983454 4048.0 + 0 ENSG00000114547.9 protein_coding ROPN1B 2 OTTHUMG00000162651.6 +44734 chr3 HAVANA gene 126056923 126058228 379.0 + 0 ENSG00000248607.1 antisense AC117422.1 2 OTTHUMG00000162638.1 +44735 chr3 HAVANA gene 126084220 126095349 645.0 + 0 ENSG00000250012.1 antisense AC079848.1 1 OTTHUMG00000162639.2 +44736 chr3 HAVANA gene 126006355 126101561 6592.0 - 0 ENSG00000114544.16 protein_coding SLC41A3 1 OTTHUMG00000162678.10 +44737 chr3 HAVANA gene 126103640 126108069 437.0 + 0 ENSG00000250218.1 antisense ALDH1L1-AS1 2 OTTHUMG00000162640.1 +44738 chr3 ENSEMBL gene 126160283 126160445 163.0 - 0 ENSG00000272020.1 snRNA RNU1-30P 3 +44739 chr3 HAVANA gene 126103562 126197994 13712.0 - 0 ENSG00000144908.13 protein_coding ALDH1L1 1 OTTHUMG00000125551.4 ncRNA_host +44740 chr3 HAVANA gene 126180065 126210169 2719.0 + 0 ENSG00000246022.2 antisense ALDH1L1-AS2 1 OTTHUMG00000162642.2 +44741 chr3 HAVANA gene 126266796 126291279 795.0 + 0 ENSG00000250934.1 lincRNA AC016924.1 1 OTTHUMG00000162679.1 +44742 chr3 HAVANA gene 126288867 126294024 254.0 - 0 ENSG00000251448.1 lincRNA AC063919.1 2 OTTHUMG00000162677.1 +44743 chr3 HAVANA gene 126342635 126357442 2848.0 - 0 ENSG00000163884.3 protein_coding KLF15 1 OTTHUMG00000162689.1 +44744 chr3 HAVANA gene 126393032 126394851 986.0 - 0 ENSG00000249833.5 antisense CCDC37-DT 1 OTTHUMG00000162688.3 +44745 chr3 HAVANA gene 126432796 126434569 1774.0 - 0 ENSG00000279328.1 TEC AC073439.1 2 OTTHUMG00000162696.1 +44746 chr3 HAVANA gene 126394939 126436556 3352.0 + 0 ENSG00000163885.11 protein_coding CFAP100 1 OTTHUMG00000162691.6 +44747 chr3 HAVANA gene 126437601 126475919 7357.0 - 0 ENSG00000070476.14 protein_coding ZXDC 2 OTTHUMG00000162754.4 +44748 chr3 HAVANA gene 126481281 126517773 3329.0 - 0 ENSG00000159650.8 protein_coding UROC1 2 OTTHUMG00000162753.2 +44749 chr3 HAVANA gene 126524283 126543291 1789.0 + 0 ENSG00000180767.9 protein_coding CHST13 2 OTTHUMG00000162721.2 +44750 chr3 HAVANA gene 126526999 126558965 2187.0 - 0 ENSG00000180697.8 protein_coding C3orf22 2 OTTHUMG00000162731.2 +44751 chr3 ENSEMBL gene 126564565 126564678 114.0 - 0 ENSG00000201968.1 rRNA_pseudogene RNA5SP138 3 +44752 chr3 HAVANA gene 126624792 126626061 528.0 + 0 ENSG00000248557.1 processed_pseudogene AC024558.1 1 OTTHUMG00000162636.2 pseudo_consens +44753 chr3 HAVANA gene 126571779 126655155 3809.0 - 0 ENSG00000197763.15 protein_coding TXNRD3 1 OTTHUMG00000162733.13 +44754 chr3 HAVANA gene 126660609 126671939 1194.0 + 0 ENSG00000198284.9 transcribed_processed_pseudogene NUP210P1 2 OTTHUMG00000159577.1 +44755 chr3 HAVANA gene 126672106 126673223 1118.0 - 0 ENSG00000248850.1 processed_pseudogene AC078867.1 1 OTTHUMG00000159578.1 pseudo_consens +44756 chr3 HAVANA gene 126766434 126767475 1042.0 - 0 ENSG00000249558.1 processed_pseudogene RCC2P4 1 OTTHUMG00000159602.1 pseudo_consens +44757 chr3 HAVANA gene 126704220 126960406 2763.0 + 0 ENSG00000159685.10 protein_coding CHCHD6 2 OTTHUMG00000159601.2 +44758 chr3 HAVANA gene 126973065 126976426 3362.0 + 0 ENSG00000280053.1 TEC AC011199.1 2 OTTHUMG00000175765.1 +44759 chr3 HAVANA gene 126988594 127037392 10944.0 + 0 ENSG00000114554.11 protein_coding PLXNA1 2 OTTHUMG00000044222.4 +44760 chr3 HAVANA gene 127193131 127198185 1740.0 + 0 ENSG00000214324.5 protein_coding C3orf56 2 OTTHUMG00000159593.3 +44761 chr3 ENSEMBL gene 127202372 127202473 102.0 - 0 ENSG00000212556.1 misc_RNA RF00019 3 +44762 chr3 HAVANA gene 127221194 127221881 688.0 - 0 ENSG00000243016.1 unprocessed_pseudogene AC112482.1 2 OTTHUMG00000159592.1 +44763 chr3 ENSEMBL gene 127240968 127241074 107.0 - 0 ENSG00000201288.1 snRNA RNU6-1047P 3 +44764 chr3 HAVANA gene 127283784 127288046 1084.0 - 0 ENSG00000239620.2 protein_coding PRR20G 2 OTTHUMG00000159594.2 +44765 chr3 HAVANA gene 127322307 127390670 927.0 - 0 ENSG00000244215.1 lincRNA LINC02016 2 OTTHUMG00000159640.1 +44766 chr3 HAVANA gene 127489553 127490787 697.0 + 0 ENSG00000240562.1 lincRNA AC016968.1 2 OTTHUMG00000159638.1 +44767 chr3 HAVANA gene 127480690 127537780 3707.0 - 0 ENSG00000239921.3 lincRNA LINC01471 2 OTTHUMG00000159643.3 +44768 chr3 HAVANA gene 127537937 127540485 760.0 + 0 ENSG00000282975.1 lincRNA LINC02034 2 OTTHUMG00000191543.1 +44769 chr3 HAVANA gene 127571232 127571838 607.0 - 0 ENSG00000282860.1 lincRNA AC084035.1 2 OTTHUMG00000191544.1 +44770 chr3 ENSEMBL gene 127575266 127575331 66.0 - 0 ENSG00000275067.1 miRNA MIR6825 3 +44771 chr3 ENSEMBL gene 127587111 127587176 66.0 - 0 ENSG00000276083.1 miRNA MIR7976 3 +44772 chr3 HAVANA gene 127571266 127598267 5622.0 - 0 ENSG00000163870.15 protein_coding TPRA1 2 OTTHUMG00000159639.8 ncRNA_host +44773 chr3 HAVANA gene 127598223 127622436 4902.0 + 0 ENSG00000073111.13 protein_coding MCM2 1 OTTHUMG00000159637.8 +44774 chr3 HAVANA gene 127620106 127629049 2779.0 - 0 ENSG00000285600.1 antisense AC023593.1 2 OTTHUMG00000192815.1 +44775 chr3 HAVANA gene 127629181 127672809 2186.0 + 0 ENSG00000114631.10 protein_coding PODXL2 2 OTTHUMG00000159642.1 +44776 chr3 HAVANA gene 127672935 127680920 6149.0 + 0 ENSG00000114626.17 protein_coding ABTB1 2 OTTHUMG00000159636.1 +44777 chr3 ENSEMBL gene 127963608 127963724 117.0 + 0 ENSG00000201210.1 rRNA_pseudogene RNA5SP139 3 +44778 chr3 HAVANA gene 127915232 127987671 5818.0 + 0 ENSG00000187715.13 protein_coding KBTBD12 1 OTTHUMG00000150508.1 +44779 chr3 HAVANA gene 127689062 128052190 11849.0 - 0 ENSG00000074416.14 protein_coding MGLL 1 OTTHUMG00000159641.6 +44780 chr3 HAVANA gene 128051641 128071683 4697.0 + 0 ENSG00000058262.9 protein_coding SEC61A1 1 OTTHUMG00000159624.4 +44781 chr3 ENSEMBL gene 128075073 128075249 177.0 - 0 ENSG00000222627.1 snRNA RNU2-37P 3 +44782 chr3 HAVANA gene 128075810 128079056 588.0 + 0 ENSG00000239608.1 antisense RUVBL1-AS1 2 OTTHUMG00000159660.1 +44783 chr3 ENSEMBL gene 128141875 128141977 103.0 - 0 ENSG00000212344.1 snRNA RNU6-823P 3 +44784 chr3 HAVANA gene 128064778 128153914 6860.0 - 0 ENSG00000175792.11 protein_coding RUVBL1 1 OTTHUMG00000159658.3 ncRNA_host +44785 chr3 HAVANA gene 128181402 128194452 696.0 - 0 ENSG00000285619.1 lincRNA AL449214.1 2 OTTHUMG00000193187.1 +44786 chr3 HAVANA gene 128153454 128408646 2421.0 + 0 ENSG00000132394.10 protein_coding EEFSEC 2 OTTHUMG00000159659.3 +44787 chr3 HAVANA gene 128462439 128467248 3645.0 - 0 ENSG00000179407.3 protein_coding DNAJB8 2 OTTHUMG00000159690.2 retrogene +44788 chr3 HAVANA gene 128463594 128472317 1798.0 + 0 ENSG00000242049.1 antisense DNAJB8-AS1 2 OTTHUMG00000159687.1 +44789 chr3 HAVANA gene 128479427 128493185 4459.0 - 0 ENSG00000179348.11 protein_coding GATA2 2 OTTHUMG00000159689.4 +44790 chr3 HAVANA gene 128489212 128502348 2283.0 + 0 ENSG00000244300.2 antisense GATA2-AS1 2 OTTHUMG00000159693.1 +44791 chr3 HAVANA gene 128538020 128538631 612.0 + 0 ENSG00000239405.1 processed_pseudogene TMED10P2 1 OTTHUMG00000159692.1 pseudo_consens +44792 chr3 HAVANA gene 128572000 128576086 2697.0 - 0 ENSG00000198685.3 lincRNA LINC01565 2 OTTHUMG00000159688.1 +44793 chr3 ENSEMBL gene 128673681 128674021 341.0 - 0 ENSG00000277250.1 misc_RNA RF00017 3 +44794 chr3 HAVANA gene 128674735 128677005 990.0 - 0 ENSG00000242551.2 unprocessed_pseudogene POU5F1P6 1 OTTHUMG00000159808.2 pseudo_consens,overlapping_locus +44795 chr3 HAVANA gene 128619970 128681075 3992.0 - 0 ENSG00000163902.11 protein_coding RPN1 2 OTTHUMG00000159691.3 ncRNA_host,overlapping_locus +44796 chr3 ENSEMBL gene 128714571 128714705 135.0 - 0 ENSG00000207130.1 snoRNA RF00399 3 +44797 chr3 HAVANA gene 128748538 128749489 952.0 - 0 ENSG00000239503.1 processed_pseudogene MARK2P8 1 OTTHUMG00000159814.1 pseudo_consens +44798 chr3 HAVANA gene 128764466 128765018 553.0 - 0 ENSG00000242992.3 processed_pseudogene FTH1P4 1 OTTHUMG00000159811.1 pseudo_consens +44799 chr3 ENSEMBL gene 128785147 128785448 302.0 + 0 ENSG00000244232.3 misc_RNA RN7SL698P 3 +44800 chr3 HAVANA gene 128798841 128799201 361.0 - 0 ENSG00000239483.1 processed_pseudogene RPS15AP16 1 OTTHUMG00000157372.1 pseudo_consens +44801 chr3 HAVANA gene 128726122 128814796 2717.0 + 0 ENSG00000075785.12 protein_coding RAB7A 1 OTTHUMG00000159812.2 ncRNA_host +44802 chr3 HAVANA gene 128843564 128844404 841.0 - 0 ENSG00000244065.1 processed_pseudogene MARK2P17 1 OTTHUMG00000159809.1 pseudo_consens +44803 chr3 HAVANA gene 128848673 128849399 727.0 - 0 ENSG00000243022.1 processed_pseudogene MARK3P3 1 OTTHUMG00000159810.1 pseudo_consens +44804 chr3 HAVANA gene 128852112 128853008 897.0 - 0 ENSG00000242062.1 processed_pseudogene MARK2P6 1 OTTHUMG00000159807.1 pseudo_consens +44805 chr3 HAVANA gene 128859716 128860526 811.0 - 0 ENSG00000261159.1 lincRNA AC112484.3 2 OTTHUMG00000175779.1 +44806 chr3 HAVANA gene 128869624 128870026 329.0 + 0 ENSG00000250796.1 processed_pseudogene AC112484.2 2 OTTHUMG00000159941.1 +44807 chr3 HAVANA gene 128861313 128871540 1456.0 - 0 ENSG00000231305.3 antisense AC112484.1 2 OTTHUMG00000159813.1 +44808 chr3 HAVANA gene 128914833 128915060 228.0 - 0 ENSG00000279507.1 TEC AC112484.4 2 OTTHUMG00000162591.1 overlapping_locus +44809 chr3 HAVANA gene 128879596 128916067 4327.0 + 0 ENSG00000177646.18 protein_coding ACAD9 2 OTTHUMG00000159942.3 +44810 chr3 HAVANA gene 128909866 129002690 7811.0 - 0 ENSG00000114656.11 protein_coding KIAA1257 1 OTTHUMG00000159946.2 +44811 chr3 HAVANA gene 129001629 129040742 2945.0 + 0 ENSG00000114654.7 protein_coding EFCC1 2 OTTHUMG00000158996.3 +44812 chr3 HAVANA gene 129045763 129046921 1159.0 + 0 ENSG00000249505.1 processed_pseudogene AC108673.1 1 OTTHUMG00000159945.1 pseudo_consens +44813 chr3 HAVANA gene 129060767 129062406 889.0 + 0 ENSG00000169704.4 protein_coding GP9 2 OTTHUMG00000159944.1 +44814 chr3 HAVANA gene 129087569 129122801 4991.0 - 0 ENSG00000172780.16 protein_coding RAB43 2 OTTHUMG00000137364.3 overlapping_locus +44815 chr3 HAVANA gene 129123439 129124003 565.0 + 0 ENSG00000273174.1 antisense AC108673.2 2 OTTHUMG00000185973.1 +44816 chr3 HAVANA gene 129087575 129161036 4868.0 - 0 ENSG00000261796.1 protein_coding ISY1-RAB43 2 OTTHUMG00000177122.1 overlapping_locus +44817 chr3 HAVANA gene 129127415 129161293 4102.0 - 0 ENSG00000240682.9 protein_coding ISY1 1 OTTHUMG00000137365.6 overlapping_locus +44818 chr3 HAVANA gene 129163606 129163940 335.0 - 0 ENSG00000273437.1 lincRNA AC108673.3 2 OTTHUMG00000185974.1 +44819 chr3 HAVANA gene 129169484 129183922 1927.0 - 0 ENSG00000169714.16 protein_coding CNBP 1 OTTHUMG00000159943.4 +44820 chr3 HAVANA gene 129218093 129218350 258.0 - 0 ENSG00000241673.1 processed_pseudogene RPS27P12 1 OTTHUMG00000157373.1 pseudo_consens +44821 chr3 ENSEMBL gene 129272146 129272243 98.0 + 0 ENSG00000278658.1 miRNA MIR6826 3 +44822 chr3 HAVANA gene 129249606 129277773 4425.0 + 0 ENSG00000181789.14 protein_coding COPG1 2 OTTHUMG00000159451.5 ncRNA_host +44823 chr3 HAVANA gene 129278828 129306186 2783.0 + 0 ENSG00000183624.13 protein_coding HMCES 1 OTTHUMG00000159452.5 +44824 chr3 HAVANA gene 129314771 129316277 1507.0 - 0 ENSG00000184897.5 protein_coding H1FX 2 OTTHUMG00000159450.2 +44825 chr3 HAVANA gene 129323046 129325426 388.0 - 0 ENSG00000248916.1 unprocessed_pseudogene NUP210P3 2 OTTHUMG00000159449.1 +44826 chr3 HAVANA gene 129315392 129326225 3420.0 + 0 ENSG00000206417.8 antisense H1FX-AS1 2 OTTHUMG00000159459.4 +44827 chr3 HAVANA gene 129334586 129335074 489.0 + 0 ENSG00000270492.1 processed_pseudogene AC137695.1 1 OTTHUMG00000184311.1 pseudo_consens +44828 chr3 HAVANA gene 129345411 129346164 754.0 + 0 ENSG00000270773.1 processed_pseudogene AC137695.2 1 OTTHUMG00000184299.2 pseudo_consens +44829 chr3 HAVANA gene 129381298 129394149 517.0 + 0 ENSG00000244932.2 unprocessed_pseudogene AL449212.1 2 OTTHUMG00000159466.1 +44830 chr3 ENSEMBL gene 129397210 129397348 139.0 - 0 ENSG00000207088.1 snoRNA SNORA7B 3 +44831 chr3 HAVANA gene 129382922 129399655 4504.0 - 0 ENSG00000251474.6 transcribed_unprocessed_pseudogene RPL32P3 2 OTTHUMG00000159465.3 +44832 chr3 HAVANA gene 129401321 129428651 7789.0 - 0 ENSG00000172771.11 protein_coding EFCAB12 2 OTTHUMG00000159464.2 +44833 chr3 HAVANA gene 129430944 129440179 3356.0 - 0 ENSG00000129071.9 protein_coding MBD4 2 OTTHUMG00000159463.4 +44834 chr3 HAVANA gene 129440036 129520507 9636.0 + 0 ENSG00000163913.11 protein_coding IFT122 1 OTTHUMG00000159516.13 +44835 chr3 HAVANA gene 129528640 129535169 2592.0 + 0 ENSG00000163914.4 protein_coding RHO 2 OTTHUMG00000159542.2 +44836 chr3 HAVANA gene 129543214 129551467 1264.0 + 0 ENSG00000178804.7 protein_coding H1FOO 1 OTTHUMG00000159541.5 +44837 chr3 ENSEMBL gene 129591349 129591635 287.0 + 0 ENSG00000239437.3 misc_RNA RN7SL752P 3 +44838 chr3 HAVANA gene 129555175 129606818 9738.0 - 0 ENSG00000004399.12 protein_coding PLXND1 1 OTTHUMG00000159547.15 +44839 chr3 HAVANA gene 129632019 129632492 474.0 - 0 ENSG00000248659.1 unprocessed_pseudogene AC023162.1 1 OTTHUMG00000159576.1 pseudo_consens +44840 chr3 ENSEMBL gene 129818932 129819033 102.0 + 0 ENSG00000202412.1 misc_RNA RNY3P13 3 +44841 chr3 ENSEMBL gene 129819777 129819876 100.0 + 0 ENSG00000283509.1 snRNA RF00026 3 +44842 chr3 HAVANA gene 129847048 129847957 910.0 - 0 ENSG00000203644.3 sense_intronic AC083799.1 2 OTTHUMG00000186578.1 overlapping_locus +44843 chr3 HAVANA gene 129647792 129893606 8138.0 - 0 ENSG00000172765.17 protein_coding TMCC1 1 OTTHUMG00000159579.10 overlapping_locus +44844 chr3 HAVANA gene 129893811 129918575 4683.0 + 0 ENSG00000271270.6 antisense TMCC1-AS1 2 OTTHUMG00000185164.3 +44845 chr3 HAVANA gene 129954105 129969294 466.0 - 0 ENSG00000250643.1 antisense AC083906.3 2 OTTHUMG00000159635.1 +44846 chr3 HAVANA gene 129974305 129977938 1978.0 + 0 ENSG00000170893.3 protein_coding TRH 1 OTTHUMG00000159634.3 +44847 chr3 HAVANA gene 129998531 129998936 406.0 + 0 ENSG00000248459.1 processed_pseudogene AC083906.1 1 OTTHUMG00000157374.1 pseudo_consens +44848 chr3 HAVANA gene 130002789 130003007 219.0 - 0 ENSG00000284731.1 unprocessed_pseudogene AC083906.5 2 OTTHUMG00000192226.1 +44849 chr3 HAVANA gene 130013182 130013541 360.0 - 0 ENSG00000249869.1 processed_pseudogene AC083906.2 1 OTTHUMG00000159716.1 pseudo_consens +44850 chr3 HAVANA gene 130021553 130022520 968.0 - 0 ENSG00000180770.3 unprocessed_pseudogene OR7E129P 1 OTTHUMG00000159715.1 pseudo_consens +44851 chr3 HAVANA gene 130034553 130035539 987.0 - 0 ENSG00000251178.1 unprocessed_pseudogene OR7E21P 1 OTTHUMG00000159728.1 pseudo_consens +44852 chr3 HAVANA gene 130048143 130055920 328.0 - 0 ENSG00000251610.2 unprocessed_pseudogene AC083906.4 2 OTTHUMG00000159730.3 +44853 chr3 HAVANA gene 130089433 130094304 713.0 - 0 ENSG00000248243.1 lincRNA LINC02014 2 OTTHUMG00000159896.1 +44854 chr3 HAVANA gene 130099092 130111472 1301.0 - 0 ENSG00000253540.5 transcribed_unprocessed_pseudogene FAM86HP 2 OTTHUMG00000159796.5 +44855 chr3 HAVANA gene 130081831 130113227 1499.0 + 0 ENSG00000251287.8 protein_coding ALG1L2 2 OTTHUMG00000159782.3 overlapping_locus +44856 chr3 HAVANA gene 130112550 130120579 1974.0 + 0 ENSG00000249846.6 lincRNA LINC02021 1 OTTHUMG00000159926.2 overlapping_locus +44857 chr3 HAVANA gene 130167790 130168030 241.0 - 0 ENSG00000248618.1 processed_pseudogene ENPP7P3 2 OTTHUMG00000159714.3 +44858 chr3 HAVANA gene 130199708 130199918 211.0 + 0 ENSG00000250580.1 processed_pseudogene SNRPCP8 2 OTTHUMG00000159925.1 +44859 chr3 HAVANA gene 130212823 130273806 3928.0 + 0 ENSG00000228252.9 transcribed_unitary_pseudogene COL6A4P2 2 OTTHUMG00000154984.7 +44860 chr3 HAVANA gene 130293337 130293760 424.0 + 0 ENSG00000249253.1 processed_pseudogene AC093004.1 1 OTTHUMG00000159726.2 pseudo_consens +44861 chr3 HAVANA gene 130345516 130484844 9586.0 + 0 ENSG00000172752.14 protein_coding COL6A5 1 OTTHUMG00000159712.4 +44862 chr3 HAVANA gene 130560334 130678155 9720.0 + 0 ENSG00000206384.10 protein_coding COL6A6 2 OTTHUMG00000159653.6 +44863 chr3 HAVANA gene 130678935 130746829 5376.0 - 0 ENSG00000196455.7 protein_coding PIK3R4 2 OTTHUMG00000159645.3 +44864 chr3 ENSEMBL gene 130811768 130812095 328.0 - 0 ENSG00000222783.1 misc_RNA RN7SKP212 3 +44865 chr3 HAVANA gene 130821184 130823914 1616.0 + 0 ENSG00000285631.1 lincRNA AC097105.1 2 OTTHUMG00000192878.1 +44866 chr3 HAVANA gene 130827659 130828376 718.0 + 0 ENSG00000232829.3 processed_pseudogene GSTO3P 1 OTTHUMG00000159700.1 pseudo_consens +44867 chr3 HAVANA gene 130868004 130869357 1354.0 - 0 ENSG00000284095.1 TEC AC055733.4 2 OTTHUMG00000192155.1 +44868 chr3 ENSEMBL gene 130914340 130914452 113.0 - 0 ENSG00000252894.2 misc_RNA RF00019 3 +44869 chr3 HAVANA gene 130918226 130919120 572.0 - 0 ENSG00000249098.1 processed_pseudogene AC055733.1 1 OTTHUMG00000159701.1 pseudo_consens,overlapping_locus +44870 chr3 HAVANA gene 130927754 130928276 523.0 - 0 ENSG00000251579.1 processed_pseudogene AC055733.3 2 OTTHUMG00000159702.1 overlapping_locus +44871 chr3 HAVANA gene 130899414 130929976 340.0 - 0 ENSG00000250592.1 antisense AC055733.2 2 OTTHUMG00000159705.1 ncRNA_host,overlapping_locus +44872 chr3 HAVANA gene 130850595 131016712 8533.0 + 0 ENSG00000017260.19 protein_coding ATP2C1 2 OTTHUMG00000136802.8 +44873 chr3 HAVANA gene 131013875 131027649 3427.0 - 0 ENSG00000034533.11 protein_coding ASTE1 1 OTTHUMG00000159644.2 +44874 chr3 HAVANA gene 131053317 131072339 718.0 - 0 ENSG00000250129.5 antisense AC116424.1 2 OTTHUMG00000159610.4 +44875 chr3 ENSEMBL gene 131092821 131092927 107.0 - 0 ENSG00000201550.1 snRNA RNU6-726P 3 +44876 chr3 HAVANA gene 131026850 131350465 5355.0 + 0 ENSG00000114670.13 protein_coding NEK11 1 OTTHUMG00000159654.13 +44877 chr3 HAVANA gene 131361898 131365122 2312.0 + 0 ENSG00000246082.2 transcribed_unitary_pseudogene NUDT16P1 2 OTTHUMG00000159755.7 +44878 chr3 HAVANA gene 131325092 131381475 4200.0 - 0 ENSG00000250608.1 processed_transcript AC010210.1 2 OTTHUMG00000159632.10 +44879 chr3 HAVANA gene 131381671 131388830 7029.0 + 0 ENSG00000198585.11 protein_coding NUDT16 2 OTTHUMG00000159623.11 +44880 chr3 HAVANA gene 131455126 131458598 3473.0 - 0 ENSG00000261167.1 sense_overlapping AC107027.3 2 OTTHUMG00000175784.1 +44881 chr3 ENSEMBL gene 131479097 131479233 137.0 - 0 ENSG00000249020.1 snoRNA SNORA58 3 +44882 chr3 HAVANA gene 131462212 131502983 2715.0 - 0 ENSG00000114686.8 protein_coding MRPL3 1 OTTHUMG00000159607.6 ncRNA_host,overlapping_locus +44883 chr3 HAVANA gene 131517831 131520880 575.0 + 0 ENSG00000248468.1 antisense AC107027.1 2 OTTHUMG00000159671.1 +44884 chr3 HAVANA gene 131526447 131527179 733.0 + 0 ENSG00000248530.1 processed_pseudogene BCL2L12P1 1 OTTHUMG00000159630.2 pseudo_consens +44885 chr3 HAVANA gene 131537571 131537685 115.0 - 0 ENSG00000251447.1 unprocessed_pseudogene AC107027.2 2 OTTHUMG00000159669.1 overlapping_locus +44886 chr3 ENSEMBL gene 131985855 131985931 77.0 - 0 ENSG00000265859.1 miRNA MIR5704 3 +44887 chr3 HAVANA gene 132175402 132176711 1310.0 + 0 ENSG00000240854.1 processed_pseudogene AC117409.1 1 OTTHUMG00000159651.1 pseudo_consens +44888 chr3 HAVANA gene 132243528 132244265 738.0 - 0 ENSG00000242899.1 processed_pseudogene RPL7P16 1 OTTHUMG00000157375.1 pseudo_consens,overlapping_locus +44889 chr3 HAVANA gene 131533555 132285410 6427.0 - 0 ENSG00000196353.11 protein_coding CPNE4 2 OTTHUMG00000159631.14 ncRNA_host,overlapping_locus +44890 chr3 HAVANA gene 132317367 132368298 4193.0 + 0 ENSG00000014257.15 protein_coding ACPP 1 OTTHUMG00000159650.5 +44891 chr3 HAVANA gene 132386522 132389074 2247.0 + 0 ENSG00000240890.2 processed_pseudogene AC020633.1 1 OTTHUMG00000159672.2 pseudo_consens +44892 chr3 HAVANA gene 132401253 132401796 544.0 + 0 ENSG00000213264.3 processed_pseudogene NIP7P2 1 OTTHUMG00000159673.2 pseudo_consens +44893 chr3 HAVANA gene 132417526 132539032 9562.0 + 0 ENSG00000138246.16 protein_coding DNAJC13 2 OTTHUMG00000159674.7 +44894 chr3 HAVANA gene 132597237 132618967 2273.0 + 0 ENSG00000129048.6 protein_coding ACKR4 2 OTTHUMG00000159768.3 +44895 chr3 HAVANA gene 132645831 132650383 1517.0 + 0 ENSG00000251614.1 processed_pseudogene HSPA8P19 1 OTTHUMG00000159927.1 pseudo_consens +44896 chr3 HAVANA gene 132558138 132660723 5674.0 - 0 ENSG00000240303.7 protein_coding ACAD11 2 OTTHUMG00000159780.5 overlapping_locus +44897 chr3 HAVANA gene 132654446 132678097 6827.0 + 0 ENSG00000081307.12 protein_coding UBA5 1 OTTHUMG00000159759.19 +44898 chr3 HAVANA gene 132680609 132722442 9701.0 - 0 ENSG00000113971.19 protein_coding NPHP3 1 OTTHUMG00000159713.3 overlapping_locus +44899 chr3 HAVANA gene 132558142 132722459 7789.0 - 0 ENSG00000274810.4 protein_coding NPHP3-ACAD11 2 OTTHUMG00000187276.4 overlapping_locus +44900 chr3 HAVANA gene 132721750 132874223 5215.0 + 0 ENSG00000248724.6 antisense NPHP3-AS1 2 OTTHUMG00000159854.2 overlapping_locus +44901 chr3 HAVANA gene 133015004 133037052 384.0 - 0 ENSG00000249725.1 lincRNA AC079942.1 1 OTTHUMG00000159720.1 +44902 chr3 HAVANA gene 133246106 133257188 2747.0 - 0 ENSG00000251011.5 antisense TMEM108-AS1 2 OTTHUMG00000159722.1 +44903 chr3 HAVANA gene 133038391 133397792 8425.0 + 0 ENSG00000144868.13 protein_coding TMEM108 1 OTTHUMG00000159685.6 +44904 chr3 HAVANA gene 133409955 133410843 889.0 + 0 ENSG00000249820.1 processed_pseudogene AC055753.1 1 OTTHUMG00000159708.1 pseudo_consens,overlapping_locus +44905 chr3 HAVANA gene 133429269 133455776 894.0 - 0 ENSG00000249993.1 antisense BFSP2-AS1 2 OTTHUMG00000159721.1 +44906 chr3 HAVANA gene 133399995 133475222 2070.0 + 0 ENSG00000170819.4 protein_coding BFSP2 2 OTTHUMG00000159719.4 overlapping_locus +44907 chr3 HAVANA gene 133490824 133491505 682.0 + 0 ENSG00000214301.4 processed_pseudogene AC022296.1 1 OTTHUMG00000159763.1 pseudo_consens +44908 chr3 HAVANA gene 133543064 133543466 403.0 - 0 ENSG00000272832.1 lincRNA AC022296.3 2 OTTHUMG00000185977.1 +44909 chr3 HAVANA gene 133546071 133546272 202.0 - 0 ENSG00000250983.1 processed_pseudogene AC022296.2 1 OTTHUMG00000159718.1 pseudo_consens +44910 chr3 ENSEMBL gene 133551186 133551315 130.0 + 0 ENSG00000201827.1 snoRNA RF00438 3 +44911 chr3 HAVANA gene 133573730 133590261 4367.0 + 0 ENSG00000091527.15 protein_coding CDV3 1 OTTHUMG00000159764.13 +44912 chr3 HAVANA gene 133598175 133662380 7304.0 - 0 ENSG00000163781.13 protein_coding TOPBP1 1 OTTHUMG00000159773.6 +44913 chr3 ENSEMBL gene 133664926 133665034 109.0 + 0 ENSG00000252641.2 snRNA RNU6-678P 3 +44914 chr3 ENSEMBL gene 133710076 133710167 92.0 - 0 ENSG00000201394.1 rRNA_pseudogene RNA5SP140 3 +44915 chr3 HAVANA gene 133661998 133754576 2318.0 + 0 ENSG00000242337.5 transcribed_unprocessed_pseudogene TFP1 2 OTTHUMG00000159751.1 overlapping_locus +44916 chr3 HAVANA gene 133760300 133762363 1917.0 + 0 ENSG00000244062.1 processed_pseudogene AC080128.1 1 OTTHUMG00000159746.1 pseudo_consens,overlapping_locus +44917 chr3 HAVANA gene 133745956 133796640 26199.0 + 0 ENSG00000091513.15 protein_coding TF 1 OTTHUMG00000150356.4 overlapping_locus +44918 chr3 HAVANA gene 133799440 133806139 3301.0 - 0 ENSG00000285908.1 antisense AC080128.2 2 OTTHUMG00000192839.1 +44919 chr3 HAVANA gene 133784033 133825772 4180.0 + 0 ENSG00000144867.11 protein_coding SRPRB 2 OTTHUMG00000159753.3 overlapping_locus +44920 chr3 HAVANA gene 133824239 133895836 6005.0 - 0 ENSG00000154917.10 protein_coding RAB6B 2 OTTHUMG00000159749.6 +44921 chr3 HAVANA gene 133928145 134052184 9834.0 - 0 ENSG00000174640.13 protein_coding SLCO2A1 1 OTTHUMG00000159745.4 +44922 chr3 HAVANA gene 134055256 134057648 640.0 - 0 ENSG00000243832.1 lincRNA LINC02000 1 OTTHUMG00000159748.1 +44923 chr3 HAVANA gene 134170487 134171085 599.0 + 0 ENSG00000231845.3 processed_pseudogene HMGB3P14 1 OTTHUMG00000159747.1 pseudo_consens +44924 chr3 HAVANA gene 134065303 134250744 8047.0 - 0 ENSG00000163785.12 protein_coding RYK 2 OTTHUMG00000159750.4 +44925 chr3 HAVANA gene 134313576 134321171 294.0 + 0 ENSG00000240006.1 lincRNA LINC02004 2 OTTHUMG00000159760.1 +44926 chr3 HAVANA gene 134347288 134349233 1946.0 - 0 ENSG00000260633.1 lincRNA AC010207.1 2 OTTHUMG00000175807.1 +44927 chr3 HAVANA gene 134351852 134356561 449.0 - 0 ENSG00000214289.2 transcribed_processed_pseudogene RPL39P5 1 OTTHUMG00000157377.3 pseudo_consens,overlapping_locus +44928 chr3 ENSEMBL gene 134367804 134367862 59.0 - 0 ENSG00000277723.1 miRNA MIR6827 3 +44929 chr3 HAVANA gene 134355874 134375479 5984.0 - 0 ENSG00000114019.14 protein_coding AMOTL2 1 OTTHUMG00000159777.7 ncRNA_host,overlapping_locus +44930 chr3 HAVANA gene 134385197 134385494 298.0 + 0 ENSG00000248377.1 processed_pseudogene HMGN1P9 2 OTTHUMG00000159772.3 +44931 chr3 ENSEMBL gene 134437827 134437906 80.0 + 0 ENSG00000284561.1 miRNA MIR4788 3 +44932 chr3 HAVANA gene 134437605 134438211 607.0 + 0 ENSG00000214288.4 processed_pseudogene HMGB3P13 1 OTTHUMG00000159770.1 pseudo_consens +44933 chr3 HAVANA gene 134477706 134486716 2359.0 - 0 ENSG00000129055.12 protein_coding ANAPC13 2 OTTHUMG00000159803.1 +44934 chr3 HAVANA gene 134510531 134511413 883.0 - 0 ENSG00000249691.1 processed_pseudogene AC026117.1 1 OTTHUMG00000159778.1 pseudo_consens +44935 chr3 HAVANA gene 134485721 134575017 10385.0 + 0 ENSG00000182923.17 protein_coding CEP63 2 OTTHUMG00000159725.7 +44936 chr3 HAVANA gene 134603138 134651636 5786.0 - 0 ENSG00000174611.11 protein_coding KY 2 OTTHUMG00000159788.1 +44937 chr3 ENSEMBL gene 134780527 134780627 101.0 - 0 ENSG00000253087.1 snRNA RNU6-1174P 3 +44938 chr3 ENSEMBL gene 134783436 134783555 120.0 - 0 ENSG00000201413.1 rRNA_pseudogene RNA5SP141 3 +44939 chr3 HAVANA gene 134597801 135260467 6956.0 + 0 ENSG00000154928.17 protein_coding EPHB1 1 OTTHUMG00000159804.7 +44940 chr3 HAVANA gene 135138469 135439888 3849.0 - 0 ENSG00000240086.6 antisense AC092969.1 2 OTTHUMG00000159842.2 +44941 chr3 HAVANA gene 135925891 135926167 277.0 + 0 ENSG00000242222.1 processed_pseudogene AC092989.1 1 OTTHUMG00000159732.1 pseudo_consens +44942 chr3 HAVANA gene 135959275 135959590 316.0 - 0 ENSG00000241905.1 processed_pseudogene NDUFS6P1 1 OTTHUMG00000159765.1 pseudo_consens +44943 chr3 HAVANA gene 136055184 136055764 581.0 + 0 ENSG00000227267.3 processed_pseudogene AC072039.1 1 OTTHUMG00000159767.1 pseudo_consens,overlapping_locus +44944 chr3 HAVANA gene 136087475 136087913 439.0 - 0 ENSG00000273455.1 antisense AC072039.2 2 OTTHUMG00000185979.1 +44945 chr3 HAVANA gene 135965673 136147891 7837.0 + 0 ENSG00000073711.10 protein_coding PPP2R3A 2 OTTHUMG00000159766.2 overlapping_locus +44946 chr3 HAVANA gene 136155549 136155996 448.0 + 0 ENSG00000241438.1 processed_pseudogene TDGF1P6 1 OTTHUMG00000159794.1 pseudo_consens +44947 chr3 HAVANA gene 136148922 136197241 5095.0 - 0 ENSG00000174579.3 protein_coding MSL2 2 OTTHUMG00000159793.3 +44948 chr3 HAVANA gene 136205540 136205915 376.0 - 0 ENSG00000244740.1 processed_pseudogene AC092991.1 1 OTTHUMG00000157378.1 pseudo_consens +44949 chr3 HAVANA gene 136250306 136337896 7532.0 + 0 ENSG00000114054.13 protein_coding PCCB 1 OTTHUMG00000159792.4 +44950 chr3 ENSEMBL gene 136430084 136430183 100.0 - 0 ENSG00000200571.1 snRNA RNU6-1284P 3 +44951 chr3 HAVANA gene 136609050 136609602 553.0 + 0 ENSG00000244101.1 processed_pseudogene HMGN1P10 1 OTTHUMG00000159802.1 pseudo_consens +44952 chr3 ENSEMBL gene 136721394 136721495 102.0 - 0 ENSG00000252914.1 snRNA RNU6-789P 3 +44953 chr3 HAVANA gene 136736500 136737229 730.0 - 0 ENSG00000240695.1 processed_pseudogene AC117382.1 1 OTTHUMG00000159801.1 pseudo_consens,overlapping_locus +44954 chr3 HAVANA gene 136336233 136752403 7846.0 - 0 ENSG00000118007.12 protein_coding STAG1 1 OTTHUMG00000159798.4 ncRNA_host,overlapping_locus +44955 chr3 HAVANA gene 136752630 136755780 3151.0 + 0 ENSG00000261758.1 antisense AC117382.2 2 OTTHUMG00000175808.1 +44956 chr3 HAVANA gene 136808551 136809623 709.0 - 0 ENSG00000242968.1 processed_pseudogene AC096992.1 1 OTTHUMG00000159791.1 pseudo_consens +44957 chr3 HAVANA gene 136837338 136839021 1684.0 - 0 ENSG00000273486.1 antisense AC096992.2 2 OTTHUMG00000185980.1 +44958 chr3 HAVANA gene 136818647 136855892 4287.0 + 0 ENSG00000168917.8 protein_coding SLC35G2 2 OTTHUMG00000159787.1 +44959 chr3 HAVANA gene 136841726 136862054 1429.0 - 0 ENSG00000239213.5 antisense NCK1-DT 2 OTTHUMG00000159786.2 +44960 chr3 HAVANA gene 136899076 136900076 1001.0 - 0 ENSG00000214283.4 processed_pseudogene RAD51AP1P1 1 OTTHUMG00000159774.1 pseudo_consens +44961 chr3 HAVANA gene 136862208 136949823 3727.0 + 0 ENSG00000158092.6 protein_coding NCK1 1 OTTHUMG00000159781.8 overlapping_locus +44962 chr3 HAVANA gene 136959125 136982196 562.0 - 0 ENSG00000249407.1 antisense IL20RB-AS1 1 OTTHUMG00000163091.1 +44963 chr3 HAVANA gene 136946230 137011085 2473.0 + 0 ENSG00000174564.12 protein_coding IL20RB 2 OTTHUMG00000159779.2 overlapping_locus +44964 chr3 ENSEMBL gene 137518134 137518255 122.0 - 0 ENSG00000201325.1 rRNA_pseudogene RNA5SP142 3 +44965 chr3 HAVANA gene 137535572 137536142 571.0 - 0 ENSG00000243886.1 processed_pseudogene AC117440.1 1 OTTHUMG00000159710.1 pseudo_consens +44966 chr3 HAVANA gene 137723774 137724543 602.0 + 0 ENSG00000242070.1 processed_pseudogene NPM1P17 1 OTTHUMG00000159756.2 pseudo_consens +44967 chr3 HAVANA gene 137764284 137766338 2055.0 + 0 ENSG00000168875.2 protein_coding SOX14 2 OTTHUMG00000159757.1 retrogene +44968 chr3 HAVANA gene 137771949 137780878 1736.0 + 0 ENSG00000239513.5 lincRNA LINC01210 2 OTTHUMG00000159758.1 +44969 chr3 HAVANA gene 137791973 137796678 4706.0 + 0 ENSG00000261146.1 lincRNA AC007159.1 2 OTTHUMG00000175811.1 +44970 chr3 HAVANA gene 137880295 137882237 1943.0 + 0 ENSG00000241478.1 processed_pseudogene HSPA8P9 1 OTTHUMG00000159761.1 pseudo_consens +44971 chr3 HAVANA gene 138004649 138005122 474.0 - 0 ENSG00000272609.1 antisense AC016252.1 2 OTTHUMG00000185981.2 +44972 chr3 HAVANA gene 137998735 138033655 3880.0 + 0 ENSG00000066405.12 protein_coding CLDN18 2 OTTHUMG00000159762.3 +44973 chr3 HAVANA gene 138101478 138102917 1440.0 - 0 ENSG00000240668.1 processed_pseudogene KRT8P36 1 OTTHUMG00000159822.1 pseudo_consens,overlapping_locus +44974 chr3 HAVANA gene 138061990 138115818 5045.0 - 0 ENSG00000158163.14 protein_coding DZIP1L 2 OTTHUMG00000159819.3 overlapping_locus +44975 chr3 HAVANA gene 138123718 138132387 1771.0 - 0 ENSG00000118017.3 protein_coding A4GNT 2 OTTHUMG00000159820.1 +44976 chr3 HAVANA gene 138161012 138174949 3160.0 - 0 ENSG00000138231.12 protein_coding DBR1 2 OTTHUMG00000159824.3 +44977 chr3 HAVANA gene 138187248 138298389 9848.0 + 0 ENSG00000114098.17 protein_coding ARMC8 1 OTTHUMG00000159821.6 +44978 chr3 HAVANA gene 138261437 138329886 3738.0 - 0 ENSG00000181322.13 protein_coding NME9 2 OTTHUMG00000159823.6 +44979 chr3 HAVANA gene 138347648 138405534 6365.0 + 0 ENSG00000158186.12 protein_coding MRAS 1 OTTHUMG00000159888.3 +44980 chr3 HAVANA gene 138434586 138481686 9816.0 + 0 ENSG00000158220.13 protein_coding ESYT3 2 OTTHUMG00000147354.2 +44981 chr3 HAVANA gene 138482065 138485755 3691.0 + 0 ENSG00000280399.1 TEC AC022497.1 2 OTTHUMG00000175812.1 +44982 chr3 HAVANA gene 138494344 138594538 4420.0 - 0 ENSG00000114107.8 protein_coding CEP70 1 OTTHUMG00000159891.5 +44983 chr3 HAVANA gene 138608606 138633376 4072.0 + 0 ENSG00000158234.12 protein_coding FAIM 2 OTTHUMG00000159885.2 +44984 chr3 HAVANA gene 138643874 138644694 504.0 - 0 ENSG00000174715.7 processed_pseudogene PPIAP72 1 OTTHUMG00000159894.1 pseudo_consens +44985 chr3 HAVANA gene 138777832 138778810 979.0 + 0 ENSG00000239207.2 processed_pseudogene GAPDHP39 1 OTTHUMG00000159890.2 pseudo_consens +44986 chr3 HAVANA gene 138796851 138797240 390.0 + 0 ENSG00000242321.1 processed_pseudogene RPL23AP40 1 OTTHUMG00000157382.1 pseudo_consens +44987 chr3 HAVANA gene 138825063 138826329 1267.0 + 0 ENSG00000241429.1 processed_pseudogene EEF1A1P25 1 OTTHUMG00000159887.1 pseudo_consens +44988 chr3 HAVANA gene 138652699 138834938 7850.0 - 0 ENSG00000051382.8 protein_coding PIK3CB 1 OTTHUMG00000159893.3 +44989 chr3 HAVANA gene 138889255 138889957 410.0 - 0 ENSG00000242244.1 processed_pseudogene ATP5MC1P3 1 OTTHUMG00000159895.1 pseudo_consens +44990 chr3 HAVANA gene 138935189 138944020 3889.0 - 0 ENSG00000244578.1 lincRNA LINC01391 1 OTTHUMG00000159892.1 +44991 chr3 HAVANA gene 138944224 138947140 2917.0 - 0 ENSG00000183770.6 protein_coding FOXL2 2 OTTHUMG00000159889.2 +44992 chr3 HAVANA gene 138947234 138953451 4567.0 + 0 ENSG00000206262.8 protein_coding FOXL2NB 2 OTTHUMG00000159886.2 +44993 chr3 HAVANA gene 139005468 139006268 801.0 - 0 ENSG00000206260.3 protein_coding PRR23A 2 OTTHUMG00000160635.2 +44994 chr3 HAVANA gene 139019031 139020926 1896.0 - 0 ENSG00000184814.5 protein_coding PRR23B 2 OTTHUMG00000160633.1 +44995 chr3 HAVANA gene 139042102 139044892 2791.0 - 0 ENSG00000233701.3 protein_coding PRR23C 2 OTTHUMG00000160634.1 +44996 chr3 HAVANA gene 139081654 139082377 724.0 - 0 ENSG00000251137.1 processed_pseudogene RPL7L1P7 1 OTTHUMG00000159953.1 pseudo_consens +44997 chr3 HAVANA gene 139104185 139125171 3522.0 + 0 ENSG00000232416.3 lincRNA BPESC1 2 OTTHUMG00000141266.3 overlapping_locus +44998 chr3 ENSEMBL gene 139233414 139233520 107.0 + 0 ENSG00000276304.1 misc_RNA RF01873 3 +44999 chr3 HAVANA gene 139232992 139233522 531.0 + 0 ENSG00000281473.1 lincRNA PISRT1 2 OTTHUMG00000189533.1 ncRNA_host +45000 chr3 HAVANA gene 139349024 139349371 348.0 - 0 ENSG00000272656.1 antisense AC024933.1 2 OTTHUMG00000185984.1 +45001 chr3 HAVANA gene 139005806 139357223 5382.0 + 0 ENSG00000175110.11 protein_coding MRPS22 1 OTTHUMG00000159910.3 ncRNA_host,overlapping_locus +45002 chr3 ENSEMBL gene 139388277 139388364 88.0 + 0 ENSG00000283418.1 snRNA RF00026 3 +45003 chr3 HAVANA gene 139355600 139389732 8177.0 - 0 ENSG00000184432.9 protein_coding COPB2 1 OTTHUMG00000159959.4 +45004 chr3 HAVANA gene 139466430 139466795 273.0 + 0 ENSG00000248790.1 antisense AC097103.1 2 OTTHUMG00000159957.1 overlapping_locus +45005 chr3 HAVANA gene 139452884 139480747 845.0 - 0 ENSG00000114113.6 protein_coding RBP2 2 OTTHUMG00000159956.2 +45006 chr3 HAVANA gene 139493809 139494937 1129.0 + 0 ENSG00000178631.7 processed_pseudogene ACTG1P1 1 OTTHUMG00000150294.1 pseudo_consens,overlapping_locus +45007 chr3 HAVANA gene 139517434 139539829 3905.0 - 0 ENSG00000114115.9 protein_coding RBP1 1 OTTHUMG00000155751.4 +45008 chr3 HAVANA gene 139389815 139583319 2120.0 + 0 ENSG00000248932.5 antisense AC097103.2 2 OTTHUMG00000159955.1 overlapping_locus +45009 chr3 HAVANA gene 139582928 139583593 666.0 - 0 ENSG00000214280.3 processed_pseudogene AC046134.1 1 OTTHUMG00000159954.1 pseudo_consens,overlapping_locus +45010 chr3 ENSEMBL gene 139584105 139584445 341.0 - 0 ENSG00000201600.1 misc_RNA RN7SKP124 3 +45011 chr3 ENSEMBL gene 139609669 139609939 271.0 - 0 ENSG00000244692.3 misc_RNA RN7SL724P 3 +45012 chr3 HAVANA gene 139560180 139678017 3451.0 - 0 ENSG00000163864.16 protein_coding NMNAT3 1 OTTHUMG00000159951.4 ncRNA_host,overlapping_locus +45013 chr3 HAVANA gene 139678620 139682564 3945.0 - 0 ENSG00000261763.1 lincRNA AC110716.2 2 OTTHUMG00000175813.1 +45014 chr3 HAVANA gene 139688403 139689342 607.0 - 0 ENSG00000250543.1 lincRNA AC110716.1 2 OTTHUMG00000159958.1 +45015 chr3 HAVANA gene 139845078 139845411 334.0 - 0 ENSG00000250161.1 processed_pseudogene TRMT112P5 1 OTTHUMG00000159950.1 pseudo_consens +45016 chr3 HAVANA gene 139837220 139859894 539.0 + 0 ENSG00000251471.1 lincRNA AC016933.1 1 OTTHUMG00000159952.1 +45017 chr3 HAVANA gene 140449435 140460351 1059.0 - 0 ENSG00000249290.5 antisense AC010181.1 2 OTTHUMG00000160163.1 +45018 chr3 HAVANA gene 140461000 140462825 482.0 - 0 ENSG00000251058.1 antisense AC010181.2 1 OTTHUMG00000160141.1 +45019 chr3 HAVANA gene 140505611 140508789 2693.0 - 0 ENSG00000250433.1 antisense CLSTN2-AS1 2 OTTHUMG00000160140.1 +45020 chr3 HAVANA gene 139935185 140577397 14596.0 + 0 ENSG00000158258.16 protein_coding CLSTN2 2 OTTHUMG00000160139.5 +45021 chr3 HAVANA gene 140619694 140619837 144.0 - 0 ENSG00000249305.1 processed_pseudogene AC048346.1 1 OTTHUMG00000160138.1 pseudo_consens +45022 chr3 HAVANA gene 140678039 140701150 2539.0 + 0 ENSG00000155890.3 protein_coding TRIM42 2 OTTHUMG00000160170.2 +45023 chr3 HAVANA gene 140865075 140867783 2709.0 - 0 ENSG00000261826.1 lincRNA AC121333.1 2 OTTHUMG00000175815.1 +45024 chr3 HAVANA gene 140902194 140902651 458.0 + 0 ENSG00000224085.3 processed_pseudogene RPL23AP41 1 OTTHUMG00000157383.1 pseudo_consens +45025 chr3 HAVANA gene 140972744 140973255 393.0 + 0 ENSG00000248773.1 sense_intronic AC108727.1 2 OTTHUMG00000160261.1 overlapping_locus +45026 chr3 HAVANA gene 140941830 140980961 10305.0 + 0 ENSG00000114120.12 protein_coding SLC25A36 1 OTTHUMG00000160260.5 overlapping_locus +45027 chr3 HAVANA gene 141115124 141124182 392.0 - 0 ENSG00000251270.1 antisense AC108727.2 1 OTTHUMG00000160222.1 +45028 chr3 HAVANA gene 141051402 141148611 3740.0 + 0 ENSG00000175093.4 protein_coding SPSB4 1 OTTHUMG00000160223.1 +45029 chr3 HAVANA gene 141258418 141258779 362.0 + 0 ENSG00000241400.1 processed_pseudogene AC022215.1 1 OTTHUMG00000157384.1 pseudo_consens,overlapping_locus +45030 chr3 HAVANA gene 141307612 141307933 322.0 - 0 ENSG00000249540.1 processed_pseudogene AC117383.2 1 OTTHUMG00000160144.2 pseudo_consens,overlapping_locus +45031 chr3 HAVANA gene 141267353 141367137 422.0 - 0 ENSG00000249417.1 antisense AC117383.1 2 OTTHUMG00000160129.2 overlapping_locus +45032 chr3 HAVANA gene 141228726 141367753 13325.0 + 0 ENSG00000155893.12 protein_coding PXYLP1 1 OTTHUMG00000160171.5 overlapping_locus +45033 chr3 HAVANA gene 141324213 141449792 14243.0 + 0 ENSG00000177311.11 protein_coding ZBTB38 1 OTTHUMG00000160128.4 overlapping_locus +45034 chr3 HAVANA gene 141470634 141471902 1269.0 - 0 ENSG00000215606.4 processed_pseudogene KRT18P35 1 OTTHUMG00000160143.1 pseudo_consens +45035 chr3 HAVANA gene 141525133 141526121 612.0 + 0 ENSG00000250170.1 sense_intronic RASA2-IT1 2 OTTHUMG00000160224.1 overlapping_locus +45036 chr3 HAVANA gene 141600276 141600579 304.0 - 0 ENSG00000249986.1 processed_pseudogene YWHAQP6 1 OTTHUMG00000160145.1 pseudo_consens +45037 chr3 HAVANA gene 141487047 141615342 5993.0 + 0 ENSG00000155903.11 protein_coding RASA2 2 OTTHUMG00000160221.3 overlapping_locus +45038 chr3 HAVANA gene 141709016 141709832 512.0 - 0 ENSG00000241899.1 processed_pseudogene TPT1P3 1 OTTHUMG00000159356.1 pseudo_consens +45039 chr3 HAVANA gene 141724425 141724526 102.0 + 0 ENSG00000241526.1 processed_pseudogene AC112771.1 1 OTTHUMG00000159053.2 pseudo_consens +45040 chr3 HAVANA gene 141660536 141729405 1327.0 + 0 ENSG00000242104.5 transcribed_unitary_pseudogene AC092978.1 1 OTTHUMG00000159357.5 pseudo_consens +45041 chr3 HAVANA gene 141738204 141747560 3147.0 + 0 ENSG00000114125.13 protein_coding RNF7 1 OTTHUMG00000141305.3 +45042 chr3 HAVANA gene 141738474 141807919 756.0 + 0 ENSG00000285558.1 protein_coding AC112504.2 2 OTTHUMG00000159068.3 +45043 chr3 HAVANA gene 141778148 141818490 3239.0 + 0 ENSG00000114124.2 protein_coding GRK7 2 OTTHUMG00000193431.1 +45044 chr3 HAVANA gene 141865012 141865279 268.0 - 0 ENSG00000228398.3 processed_pseudogene HMGN2P25 2 OTTHUMG00000159069.1 +45045 chr3 ENSEMBL gene 141902924 141903030 107.0 - 0 ENSG00000200389.1 snRNA RNU6-509P 3 +45046 chr3 HAVANA gene 141918252 141919021 376.0 - 0 ENSG00000244124.1 antisense ATP1B3-AS1 2 OTTHUMG00000159102.1 +45047 chr3 HAVANA gene 141876124 141926514 2584.0 + 0 ENSG00000069849.10 protein_coding ATP1B3 1 OTTHUMG00000159081.5 +45048 chr3 HAVANA gene 141936707 141938547 1841.0 - 0 ENSG00000279147.1 TEC AC112504.1 2 OTTHUMG00000185988.1 +45049 chr3 HAVANA gene 142043623 142044198 576.0 - 0 ENSG00000233597.3 processed_pseudogene AC133435.1 1 OTTHUMG00000157387.1 pseudo_consens,overlapping_locus +45050 chr3 ENSEMBL gene 142145454 142145555 102.0 + 0 ENSG00000206604.1 snRNA RNU6-425P 3 +45051 chr3 HAVANA gene 141944428 142149544 11897.0 - 0 ENSG00000114126.17 protein_coding TFDP2 2 OTTHUMG00000164975.4 overlapping_locus +45052 chr3 HAVANA gene 142157527 142225607 12158.0 - 0 ENSG00000175066.15 protein_coding GK5 2 OTTHUMG00000133572.5 +45053 chr3 ENSEMBL gene 142407657 142407737 81.0 - 0 ENSG00000251804.1 snRNA RNU6-1294P 3 +45054 chr3 ENSEMBL gene 142420205 142420369 165.0 - 0 ENSG00000202125.1 snRNA RNU1-100P 3 +45055 chr3 HAVANA gene 142306607 142448062 11982.0 - 0 ENSG00000114127.10 protein_coding XRN1 1 OTTHUMG00000159251.5 ncRNA_host +45056 chr3 HAVANA gene 142450102 142452149 2048.0 + 0 ENSG00000242479.1 processed_pseudogene AC109992.1 2 OTTHUMG00000159253.1 +45057 chr3 HAVANA gene 142465315 142472337 765.0 - 0 ENSG00000244327.1 sense_overlapping AC109992.2 2 OTTHUMG00000159252.1 overlapping_locus +45058 chr3 HAVANA gene 142449235 142578826 12496.0 - 0 ENSG00000175054.14 protein_coding ATR 2 OTTHUMG00000159234.20 overlapping_locus +45059 chr3 HAVANA gene 142580910 142582399 859.0 + 0 ENSG00000242390.1 processed_pseudogene RPL6P9 1 OTTHUMG00000157389.1 pseudo_consens +45060 chr3 ENSEMBL gene 142591677 142591791 115.0 - 0 ENSG00000252745.1 rRNA_pseudogene RNA5SP143 3 +45061 chr3 HAVANA gene 142654784 142656745 346.0 - 0 ENSG00000239641.1 antisense PLS1-AS1 1 OTTHUMG00000159291.1 +45062 chr3 ENSEMBL gene 142673597 142673904 308.0 + 0 ENSG00000199319.1 misc_RNA RN7SKP25 3 +45063 chr3 HAVANA gene 142596387 142713664 5294.0 + 0 ENSG00000120756.12 protein_coding PLS1 2 OTTHUMG00000159292.4 ncRNA_host +45064 chr3 ENSEMBL gene 142801207 142801268 62.0 + 0 ENSG00000251787.1 snRNA RNU7-47P 3 +45065 chr3 HAVANA gene 142724074 142807888 4768.0 + 0 ENSG00000144935.14 protein_coding TRPC1 2 OTTHUMG00000159301.2 ncRNA_host +45066 chr3 HAVANA gene 142827096 142827728 633.0 - 0 ENSG00000240950.1 processed_pseudogene AC021074.1 1 OTTHUMG00000157390.1 pseudo_consens,overlapping_locus +45067 chr3 HAVANA gene 142815922 142889206 3538.0 - 0 ENSG00000163710.8 protein_coding PCOLCE2 1 OTTHUMG00000159312.3 overlapping_locus +45068 chr3 HAVANA gene 142926675 142942534 2060.0 + 0 ENSG00000243818.4 antisense AC021074.3 2 OTTHUMG00000159310.3 +45069 chr3 HAVANA gene 142960372 142960543 172.0 + 0 ENSG00000241592.1 processed_pseudogene AC021074.2 1 OTTHUMG00000159315.1 pseudo_consens +45070 chr3 HAVANA gene 142949164 142963682 4169.0 - 0 ENSG00000188582.8 protein_coding PAQR9 2 OTTHUMG00000159313.2 retrogene +45071 chr3 HAVANA gene 143000907 143001467 561.0 - 0 ENSG00000268129.1 lincRNA AC026304.1 2 OTTHUMG00000182515.1 +45072 chr3 HAVANA gene 142960650 143001559 4421.0 + 0 ENSG00000241570.8 antisense PAQR9-AS1 2 OTTHUMG00000159316.4 overlapping_locus +45073 chr3 HAVANA gene 142964497 143060546 11118.0 + 0 ENSG00000163714.17 protein_coding U2SURP 1 OTTHUMG00000159323.18 overlapping_locus +45074 chr3 HAVANA gene 143111802 143112359 368.0 + 0 ENSG00000243733.1 lincRNA AC018450.2 2 OTTHUMG00000159353.1 +45075 chr3 HAVANA gene 143119331 143124014 4582.0 + 0 ENSG00000175040.5 protein_coding CHST2 2 OTTHUMG00000159351.2 overlapping_locus +45076 chr3 HAVANA gene 143123362 143131893 746.0 + 0 ENSG00000241679.2 processed_transcript AC018450.1 1 OTTHUMG00000159352.1 overlapping_locus +45077 chr3 HAVANA gene 143176327 143177617 1291.0 + 0 ENSG00000244171.4 processed_pseudogene PBX2P1 1 OTTHUMG00000159350.2 pseudo_consens +45078 chr3 HAVANA gene 143313067 143314429 441.0 - 0 ENSG00000240888.1 sense_intronic AC131210.1 1 OTTHUMG00000159376.1 overlapping_locus +45079 chr3 HAVANA gene 143342246 143347071 518.0 + 0 ENSG00000240012.1 antisense SLC9A9-AS1 2 OTTHUMG00000159374.1 +45080 chr3 HAVANA gene 143381338 143382161 327.0 + 0 ENSG00000244493.1 antisense SLC9A9-AS2 2 OTTHUMG00000159375.1 +45081 chr3 HAVANA gene 143503275 143504273 999.0 - 0 ENSG00000243033.2 processed_pseudogene GAPDHP47 1 OTTHUMG00000159382.2 pseudo_consens,overlapping_locus +45082 chr3 HAVANA gene 143517123 143518229 1107.0 - 0 ENSG00000243759.1 processed_pseudogene ST13P15 1 OTTHUMG00000159381.1 pseudo_consens,overlapping_locus +45083 chr3 HAVANA gene 143620528 143627690 684.0 + 0 ENSG00000248374.1 unprocessed_pseudogene AC073358.1 1 OTTHUMG00000159372.1 pseudo_consens +45084 chr3 HAVANA gene 143265222 143848531 4087.0 - 0 ENSG00000181804.14 protein_coding SLC9A9 2 OTTHUMG00000159373.3 overlapping_locus +45085 chr3 HAVANA gene 143855739 143856142 404.0 - 0 ENSG00000235110.5 processed_pseudogene AC107421.1 1 OTTHUMG00000157391.1 pseudo_consens +45086 chr3 HAVANA gene 143971798 144048719 5487.0 + 0 ENSG00000181744.8 protein_coding C3orf58 1 OTTHUMG00000159380.7 +45087 chr3 ENSEMBL gene 144186905 144187020 116.0 - 0 ENSG00000222778.1 rRNA_pseudogene RNA5SP144 3 +45088 chr3 HAVANA gene 144442211 144445844 3634.0 - 0 ENSG00000280397.1 TEC AC011592.1 2 OTTHUMG00000175816.1 +45089 chr3 HAVANA gene 145523538 145524415 878.0 + 0 ENSG00000244024.1 processed_pseudogene LARP7P4 2 OTTHUMG00000159390.1 +45090 chr3 HAVANA gene 145684572 145685092 521.0 + 0 ENSG00000241695.1 processed_pseudogene GM2AP1 1 OTTHUMG00000159389.1 pseudo_consens +45091 chr3 HAVANA gene 145824257 145824739 483.0 - 0 ENSG00000239797.1 processed_pseudogene RPL21P39 1 OTTHUMG00000157392.1 pseudo_consens +45092 chr3 HAVANA gene 145939912 145961536 1118.0 + 0 ENSG00000244358.1 lincRNA AC055758.2 2 OTTHUMG00000159391.1 +45093 chr3 HAVANA gene 145961755 145963623 569.0 + 0 ENSG00000240095.1 lincRNA AC055758.1 2 OTTHUMG00000159392.1 +45094 chr3 HAVANA gene 146059585 146061679 2095.0 - 0 ENSG00000261051.1 sense_overlapping AC107021.2 2 OTTHUMG00000175832.1 +45095 chr3 HAVANA gene 146066344 146069185 709.0 - 0 ENSG00000240032.1 antisense LNCSRLR 1 OTTHUMG00000159416.1 +45096 chr3 HAVANA gene 146064042 146105204 807.0 + 0 ENSG00000243415.2 antisense AC107021.1 2 OTTHUMG00000159414.3 +45097 chr3 HAVANA gene 146069440 146163653 7646.0 - 0 ENSG00000152952.11 protein_coding PLOD2 2 OTTHUMG00000159417.2 +45098 chr3 HAVANA gene 146192339 146251179 4227.0 - 0 ENSG00000114698.14 protein_coding PLSCR4 2 OTTHUMG00000159415.14 +45099 chr3 HAVANA gene 146342996 146348480 433.0 - 0 ENSG00000243596.1 processed_pseudogene AC130509.1 2 OTTHUMG00000159428.1 +45100 chr3 HAVANA gene 146391363 146416603 914.0 - 0 ENSG00000241358.1 transcribed_processed_pseudogene AC069528.1 2 OTTHUMG00000159430.1 overlapping_locus +45101 chr3 HAVANA gene 146391421 146495991 2557.0 - 0 ENSG00000163746.11 protein_coding PLSCR2 1 OTTHUMG00000159429.13 overlapping_locus +45102 chr3 HAVANA gene 146504570 146506560 1991.0 - 0 ENSG00000279320.1 TEC AC069528.2 2 OTTHUMG00000175835.1 +45103 chr3 HAVANA gene 146515180 146544864 4340.0 - 0 ENSG00000188313.12 protein_coding PLSCR1 2 OTTHUMG00000159427.4 +45104 chr3 ENSEMBL gene 146571477 146571583 107.0 + 0 ENSG00000199812.1 snRNA RNU6-428P 3 +45105 chr3 HAVANA gene 146589602 146590325 450.0 + 0 ENSG00000241457.1 antisense PLSCR5-AS1 1 OTTHUMG00000159436.1 +45106 chr3 HAVANA gene 146576555 146606216 2140.0 - 0 ENSG00000231213.6 protein_coding PLSCR5 2 OTTHUMG00000159437.1 +45107 chr3 HAVANA gene 146921923 146925218 1893.0 + 0 ENSG00000242671.1 lincRNA LINC02010 2 OTTHUMG00000159455.1 +45108 chr3 ENSEMBL gene 146996607 146996713 107.0 - 0 ENSG00000207156.1 snRNA RNU6-505P 3 +45109 chr3 HAVANA gene 147276768 147277252 459.0 + 0 ENSG00000239412.1 processed_pseudogene RPL21P71 1 OTTHUMG00000157393.1 pseudo_consens +45110 chr3 HAVANA gene 146909685 147370656 570.0 - 0 ENSG00000243620.1 antisense AC092957.1 2 OTTHUMG00000159458.1 ncRNA_host +45111 chr3 HAVANA gene 147386967 147387453 268.0 + 0 ENSG00000241202.1 antisense ZIC4-AS1 1 OTTHUMG00000159453.1 +45112 chr3 HAVANA gene 147386046 147406860 8568.0 - 0 ENSG00000174963.17 protein_coding ZIC4 1 OTTHUMG00000037281.8 +45113 chr3 HAVANA gene 147393422 147510293 6806.0 + 0 ENSG00000152977.9 protein_coding ZIC1 1 OTTHUMG00000159456.1 +45114 chr3 HAVANA gene 147590996 147591835 840.0 - 0 ENSG00000240804.1 processed_pseudogene NPM1P28 1 OTTHUMG00000159461.1 pseudo_consens +45115 chr3 HAVANA gene 147844123 147846657 493.0 - 0 ENSG00000239661.1 lincRNA AC092925.1 2 OTTHUMG00000159462.1 +45116 chr3 HAVANA gene 147940004 148006755 2835.0 + 0 ENSG00000239922.1 lincRNA AC092958.1 2 OTTHUMG00000159460.2 +45117 chr3 HAVANA gene 148028046 148079637 1759.0 - 0 ENSG00000285798.1 lincRNA AC092958.4 2 OTTHUMG00000193013.1 +45118 chr3 HAVANA gene 148078159 148088029 391.0 + 0 ENSG00000241131.1 lincRNA LINC02032 1 OTTHUMG00000159502.1 +45119 chr3 HAVANA gene 148090341 148096921 708.0 + 0 ENSG00000285660.1 lincRNA AC092958.3 2 OTTHUMG00000192773.1 overlapping_locus +45120 chr3 HAVANA gene 148093175 148127233 492.0 + 0 ENSG00000241792.1 lincRNA AC092958.2 2 OTTHUMG00000159498.1 +45121 chr3 HAVANA gene 148166344 148167298 955.0 - 0 ENSG00000205412.5 processed_pseudogene HNRNPA1P20 1 OTTHUMG00000159499.1 pseudo_consens +45122 chr3 HAVANA gene 148160911 148226606 604.0 + 0 ENSG00000244650.2 lincRNA AC025566.1 2 OTTHUMG00000159500.2 +45123 chr3 HAVANA gene 148195729 148280098 679.0 - 0 ENSG00000243347.1 lincRNA LINC02045 2 OTTHUMG00000159504.1 +45124 chr3 HAVANA gene 148280891 148399956 754.0 + 0 ENSG00000242440.1 lincRNA LINC02046 1 OTTHUMG00000159505.1 +45125 chr3 HAVANA gene 148368384 148591927 687.0 - 0 ENSG00000285557.1 lincRNA AC069410.1 2 OTTHUMG00000193154.1 +45126 chr3 HAVANA gene 148695994 148696204 211.0 - 0 ENSG00000241993.1 processed_pseudogene RPL38P1 1 OTTHUMG00000157394.1 pseudo_consens +45127 chr3 HAVANA gene 148697784 148743008 3478.0 + 0 ENSG00000144891.17 protein_coding AGTR1 2 OTTHUMG00000159503.1 +45128 chr3 HAVANA gene 148824782 148825387 606.0 - 0 ENSG00000244089.1 processed_pseudogene HMGB1P30 1 OTTHUMG00000159519.1 pseudo_consens +45129 chr3 HAVANA gene 148791102 148860187 5703.0 + 0 ENSG00000153002.11 protein_coding CPB1 1 OTTHUMG00000159520.2 +45130 chr3 HAVANA gene 148865256 148897196 1848.0 + 0 ENSG00000163751.3 protein_coding CPA3 2 OTTHUMG00000159526.1 +45131 chr3 HAVANA gene 148850933 148960112 1414.0 - 0 ENSG00000240521.1 antisense AC092979.1 2 OTTHUMG00000159518.1 +45132 chr3 HAVANA gene 148985868 148987668 1801.0 - 0 ENSG00000241627.3 processed_pseudogene UBQLN4P1 2 OTTHUMG00000159532.2 +45133 chr3 HAVANA gene 148991341 149027668 3511.0 + 0 ENSG00000163754.17 protein_coding GYG1 1 OTTHUMG00000159533.21 +45134 chr3 HAVANA gene 149030127 149086554 6024.0 - 0 ENSG00000071794.15 protein_coding HLTF 1 OTTHUMG00000159534.4 +45135 chr3 ENSEMBL gene 149094353 149094462 110.0 - 0 ENSG00000201031.1 misc_RNA RF00019 3 +45136 chr3 HAVANA gene 149099499 149099815 317.0 - 0 ENSG00000240511.1 processed_pseudogene MED28P2 1 OTTHUMG00000159549.1 pseudo_consens +45137 chr3 HAVANA gene 149086332 149102823 415.0 + 0 ENSG00000239718.1 antisense HLTF-AS1 2 OTTHUMG00000159531.2 +45138 chr3 HAVANA gene 149129584 149173732 6256.0 + 0 ENSG00000163755.8 protein_coding HPS3 1 OTTHUMG00000159548.1 +45139 chr3 HAVANA gene 149162410 149222055 7296.0 - 0 ENSG00000047457.13 protein_coding CP 1 OTTHUMG00000159563.5 +45140 chr3 HAVANA gene 149229356 149291800 3934.0 - 0 ENSG00000240216.7 transcribed_unitary_pseudogene CPHL1P 2 OTTHUMG00000159584.4 +45141 chr3 HAVANA gene 149284782 149333653 551.0 + 0 ENSG00000244468.1 antisense AC093001.1 2 OTTHUMG00000159583.1 +45142 chr3 HAVANA gene 149318498 149334414 4482.0 - 0 ENSG00000163762.6 protein_coding TM4SF18 2 OTTHUMG00000159582.2 +45143 chr3 HAVANA gene 149357169 149357545 377.0 - 0 ENSG00000243822.1 processed_pseudogene AC073522.1 1 OTTHUMG00000157396.1 pseudo_consens +45144 chr3 HAVANA gene 149369022 149377865 3668.0 - 0 ENSG00000169908.11 protein_coding TM4SF1 2 OTTHUMG00000159597.1 +45145 chr3 HAVANA gene 149384179 149385800 1001.0 - 0 ENSG00000243885.1 lincRNA AC108751.4 2 OTTHUMG00000159595.1 +45146 chr3 HAVANA gene 149377778 149386583 931.0 + 0 ENSG00000240541.2 antisense TM4SF1-AS1 1 OTTHUMG00000159596.1 +45147 chr3 HAVANA gene 149433044 149433274 231.0 - 0 ENSG00000240246.1 processed_pseudogene AC108751.2 1 OTTHUMG00000157413.1 pseudo_consens +45148 chr3 HAVANA gene 149463779 149464114 336.0 - 0 ENSG00000282502.1 processed_pseudogene FKBP1AP4 1 OTTHUMG00000190905.1 pseudo_consens +45149 chr3 HAVANA gene 149462182 149464830 1020.0 - 0 ENSG00000241929.1 processed_pseudogene AC108751.3 1 OTTHUMG00000159613.1 pseudo_consens +45150 chr3 HAVANA gene 149464839 149465201 363.0 - 0 ENSG00000239408.1 processed_pseudogene AC108751.1 2 OTTHUMG00000159621.1 +45151 chr3 HAVANA gene 149494660 149495995 1336.0 + 0 ENSG00000244503.1 processed_pseudogene AC108751.5 1 OTTHUMG00000159617.1 pseudo_consens,overlapping_locus +45152 chr3 HAVANA gene 149473974 149503281 2140.0 + 0 ENSG00000169903.6 protein_coding TM4SF4 1 OTTHUMG00000159619.2 overlapping_locus +45153 chr3 ENSEMBL gene 149525631 149525726 96.0 + 0 ENSG00000252581.1 snRNA RNU6-1098P 3 +45154 chr3 HAVANA gene 149648997 149650184 451.0 - 0 ENSG00000241985.1 sense_intronic WWTR1-IT1 2 OTTHUMG00000159620.1 overlapping_locus +45155 chr3 HAVANA gene 149657020 149661364 2603.0 + 0 ENSG00000241313.2 antisense WWTR1-AS1 2 OTTHUMG00000159618.1 +45156 chr3 HAVANA gene 149517235 149736714 8413.0 - 0 ENSG00000018408.14 protein_coding WWTR1 1 OTTHUMG00000159614.13 overlapping_locus +45157 chr3 HAVANA gene 149738470 149752499 4901.0 - 0 ENSG00000114744.8 protein_coding COMMD2 2 OTTHUMG00000159616.2 +45158 chr3 ENSEMBL gene 149779009 149779108 100.0 - 0 ENSG00000251854.1 snRNA RNU6-507P 3 +45159 chr3 ENSEMBL gene 149917342 149917449 108.0 - 0 ENSG00000252172.1 snRNA RNU6-720P 3 +45160 chr3 HAVANA gene 149938997 149939799 803.0 - 0 ENSG00000239351.1 processed_pseudogene NPM1P29 1 OTTHUMG00000159734.1 pseudo_consens,overlapping_locus +45161 chr3 HAVANA gene 149812708 149962139 3635.0 + 0 ENSG00000082996.19 protein_coding RNF13 2 OTTHUMG00000150338.7 +45162 chr3 HAVANA gene 149761100 149968385 6544.0 - 0 ENSG00000206199.10 protein_coding ANKUB1 1 OTTHUMG00000159615.6 ncRNA_host,overlapping_locus +45163 chr3 HAVANA gene 149976755 149979355 721.0 + 0 ENSG00000242791.2 lincRNA AC117395.1 2 OTTHUMG00000159743.1 +45164 chr3 HAVANA gene 149982181 149983308 1128.0 - 0 ENSG00000224831.3 processed_pseudogene TMEM183B 2 OTTHUMG00000159739.1 overlapping_locus +45165 chr3 HAVANA gene 149984395 149984797 403.0 + 0 ENSG00000182000.9 processed_pseudogene PPIAP73 1 OTTHUMG00000159684.1 pseudo_consens +45166 chr3 HAVANA gene 149999645 150000690 1046.0 + 0 ENSG00000241947.1 processed_pseudogene HNRNPA1P24 1 OTTHUMG00000159736.1 pseudo_consens +45167 chr3 HAVANA gene 149964904 150050788 3440.0 - 0 ENSG00000070087.14 protein_coding PFN2 1 OTTHUMG00000159683.5 overlapping_locus +45168 chr3 HAVANA gene 150050729 150051456 728.0 + 0 ENSG00000240477.1 processed_pseudogene AC022494.1 1 OTTHUMG00000159741.1 pseudo_consens,overlapping_locus +45169 chr3 HAVANA gene 150077494 150080117 1967.0 - 0 ENSG00000243321.3 lincRNA LINC01998 2 OTTHUMG00000159740.1 +45170 chr3 HAVANA gene 150150538 150150944 407.0 + 0 ENSG00000241143.1 transcribed_processed_pseudogene RPL32P9 1 OTTHUMG00000157414.1 pseudo_consens,overlapping_locus +45171 chr3 HAVANA gene 150039214 150213726 1032.0 + 0 ENSG00000243944.5 antisense AC117386.2 1 OTTHUMG00000159742.1 overlapping_locus +45172 chr3 HAVANA gene 150202174 150225190 606.0 - 0 ENSG00000241048.1 lincRNA AC117386.1 2 OTTHUMG00000159738.1 +45173 chr3 HAVANA gene 150238519 150240209 609.0 + 0 ENSG00000244541.5 lincRNA LINC01213 2 OTTHUMG00000159737.1 +45174 chr3 ENSEMBL gene 150241777 150241860 84.0 + 0 ENSG00000278234.1 snRNA RF00004 3 +45175 chr3 HAVANA gene 150265412 150287373 335.0 - 0 ENSG00000243550.2 lincRNA LINC01214 2 OTTHUMG00000159735.2 +45176 chr3 HAVANA gene 150408335 150466431 11676.0 + 0 ENSG00000196428.12 protein_coding TSC22D2 2 OTTHUMG00000159744.2 +45177 chr3 HAVANA gene 150546678 150584242 4131.0 + 0 ENSG00000144895.11 protein_coding EIF2A 1 OTTHUMG00000159775.3 +45178 chr3 HAVANA gene 150541994 150603228 5747.0 - 0 ENSG00000120742.10 protein_coding SERP1 1 OTTHUMG00000159769.2 +45179 chr3 HAVANA gene 150611262 150611877 616.0 - 0 ENSG00000271711.1 processed_pseudogene AC069236.1 1 OTTHUMG00000184356.1 pseudo_consens +45180 chr3 HAVANA gene 150602875 150630445 4135.0 + 0 ENSG00000198843.12 protein_coding SELENOT 1 OTTHUMG00000159825.2 +45181 chr3 HAVANA gene 150659885 150703971 2075.0 - 0 ENSG00000163645.14 protein_coding ERICH6 2 OTTHUMG00000133569.4 +45182 chr3 HAVANA gene 150703564 150720146 827.0 + 0 ENSG00000240137.5 antisense ERICH6-AS1 2 OTTHUMG00000159845.1 +45183 chr3 HAVANA gene 150719997 150720836 476.0 - 0 ENSG00000244668.1 processed_pseudogene SNRPCP3 1 OTTHUMG00000159850.1 pseudo_consens +45184 chr3 HAVANA gene 150761937 150762538 441.0 + 0 ENSG00000244265.1 antisense SIAH2-AS1 2 OTTHUMG00000159851.1 +45185 chr3 HAVANA gene 150741127 150763477 2617.0 - 0 ENSG00000181788.3 protein_coding SIAH2 1 OTTHUMG00000159847.2 +45186 chr3 HAVANA gene 150871045 150905439 1686.0 - 0 ENSG00000214237.10 protein_coding MINDY4B 2 OTTHUMG00000159843.5 overlapping_locus +45187 chr3 HAVANA gene 150882997 150941743 1329.0 - 0 ENSG00000260234.5 protein_coding AC020636.2 2 OTTHUMG00000175578.2 overlapping_locus +45188 chr3 HAVANA gene 150926163 150972999 3472.0 - 0 ENSG00000163646.11 protein_coding CLRN1 2 OTTHUMG00000140368.7 overlapping_locus +45189 chr3 HAVANA gene 150890636 151038818 565.0 + 0 ENSG00000243273.1 antisense AC020636.1 2 OTTHUMG00000159849.1 overlapping_locus +45190 chr3 ENSEMBL gene 151079506 151079584 79.0 + 0 ENSG00000276055.1 misc_RNA RF02089 3 +45191 chr3 HAVANA gene 150852484 151080726 3064.0 + 0 ENSG00000239265.5 antisense CLRN1-AS1 2 OTTHUMG00000159846.2 ncRNA_host,overlapping_locus +45192 chr3 ENSEMBL gene 151188099 151188223 125.0 + 0 ENSG00000199994.1 rRNA_pseudogene RNA5SP145 3 +45193 chr3 HAVANA gene 151197832 151203201 1795.0 - 0 ENSG00000174946.6 protein_coding GPR171 2 OTTHUMG00000159861.3 +45194 chr3 HAVANA gene 151269440 151270129 690.0 + 0 ENSG00000239570.1 processed_pseudogene SETP11 1 OTTHUMG00000159860.1 pseudo_consens,overlapping_locus +45195 chr3 HAVANA gene 151212117 151278467 2815.0 - 0 ENSG00000174944.8 protein_coding P2RY14 2 OTTHUMG00000159859.3 +45196 chr3 HAVANA gene 151294086 151316952 1698.0 - 0 ENSG00000138271.5 protein_coding GPR87 2 OTTHUMG00000159858.2 +45197 chr3 HAVANA gene 151326312 151329548 2764.0 - 0 ENSG00000181631.6 protein_coding P2RY13 2 OTTHUMG00000155745.1 +45198 chr3 HAVANA gene 151337380 151384812 1859.0 - 0 ENSG00000169313.9 protein_coding P2RY12 2 OTTHUMG00000159863.1 +45199 chr3 HAVANA gene 151085697 151437072 12619.0 + 0 ENSG00000144893.12 protein_coding MED12L 1 OTTHUMG00000159844.4 overlapping_locus +45200 chr3 HAVANA gene 151425384 151458709 11727.0 - 0 ENSG00000152580.8 protein_coding IGSF10 1 OTTHUMG00000159856.1 +45201 chr3 HAVANA gene 151475804 151476174 371.0 - 0 ENSG00000242810.1 processed_pseudogene MRPL42P6 1 OTTHUMG00000159862.1 pseudo_consens +45202 chr3 HAVANA gene 151499639 151499806 168.0 + 0 ENSG00000242119.1 processed_pseudogene AC117454.1 2 OTTHUMG00000159857.1 +45203 chr3 ENSEMBL gene 151565876 151565995 120.0 - 0 ENSG00000264330.1 miRNA MIR5186 3 +45204 chr3 HAVANA gene 151637174 151657966 580.0 + 0 ENSG00000241151.1 lincRNA LINC02066 1 OTTHUMG00000159875.1 +45205 chr3 HAVANA gene 151733916 151761339 5071.0 + 0 ENSG00000197953.5 protein_coding AADACL2 2 OTTHUMG00000155914.4 +45206 chr3 HAVANA gene 151759747 151762011 2265.0 - 0 ENSG00000242097.1 processed_pseudogene AC068647.1 2 OTTHUMG00000159878.1 overlapping_locus +45207 chr3 HAVANA gene 151770428 151784894 2012.0 + 0 ENSG00000240602.7 transcribed_unprocessed_pseudogene AADACP1 1 OTTHUMG00000159879.2 +45208 chr3 HAVANA gene 151797047 151808249 523.0 + 0 ENSG00000250271.2 transcribed_unprocessed_pseudogene AC068647.2 2 OTTHUMG00000162581.2 +45209 chr3 HAVANA gene 151814037 151828488 1668.0 + 0 ENSG00000114771.13 protein_coding AADAC 2 OTTHUMG00000159876.2 +45210 chr3 HAVANA gene 151873643 151884619 4181.0 + 0 ENSG00000198829.6 protein_coding SUCNR1 2 OTTHUMG00000159880.3 +45211 chr3 HAVANA gene 151751443 151928175 635.0 - 0 ENSG00000242908.6 antisense AADACL2-AS1 2 OTTHUMG00000159877.2 overlapping_locus +45212 chr3 HAVANA gene 152118173 152151724 554.0 - 0 ENSG00000239941.1 lincRNA AC108718.1 2 OTTHUMG00000159881.1 +45213 chr3 HAVANA gene 152262616 152269555 6585.0 - 0 ENSG00000229619.3 antisense MBNL1-AS1 2 OTTHUMG00000186506.1 +45214 chr3 HAVANA gene 152339695 152340990 1296.0 - 0 ENSG00000221962.5 transcribed_processed_pseudogene TMEM14EP 1 OTTHUMG00000159652.3 pseudo_consens +45215 chr3 ENSEMBL gene 152449272 152449384 113.0 + 0 ENSG00000201217.1 misc_RNA RF00019 3 +45216 chr3 HAVANA gene 152243828 152465780 9989.0 + 0 ENSG00000152601.17 protein_coding MBNL1 1 OTTHUMG00000159163.4 ncRNA_host +45217 chr3 HAVANA gene 152457759 152496813 474.0 - 0 ENSG00000243305.1 antisense AC026347.1 2 OTTHUMG00000159699.1 +45218 chr3 HAVANA gene 152648146 152650447 487.0 + 0 ENSG00000244545.1 lincRNA AC092924.1 2 OTTHUMG00000159698.1 +45219 chr3 HAVANA gene 152800434 152800732 299.0 - 0 ENSG00000242561.1 processed_pseudogene ATP5MGP5 1 OTTHUMG00000159696.1 pseudo_consens +45220 chr3 HAVANA gene 152834693 152841439 6747.0 + 0 ENSG00000169860.6 protein_coding P2RY1 2 OTTHUMG00000159694.2 +45221 chr3 HAVANA gene 153067278 153067551 274.0 + 0 ENSG00000241810.1 processed_pseudogene HMGN2P13 2 OTTHUMG00000159686.1 +45222 chr3 HAVANA gene 153129074 153129640 567.0 - 0 ENSG00000241671.1 processed_pseudogene AC117394.1 1 OTTHUMG00000159657.1 pseudo_consens +45223 chr3 HAVANA gene 153156511 153161775 323.0 - 0 ENSG00000244268.1 antisense AC117394.2 2 OTTHUMG00000159656.1 +45224 chr3 HAVANA gene 153162270 153170620 8351.0 + 0 ENSG00000181467.4 protein_coding RAP2B 2 OTTHUMG00000159655.2 +45225 chr3 ENSEMBL gene 153199700 153200017 318.0 - 0 ENSG00000265813.2 misc_RNA RN7SL300P 3 +45226 chr3 HAVANA gene 153357107 153374186 634.0 + 0 ENSG00000241220.1 lincRNA AC078788.1 1 OTTHUMG00000159625.1 +45227 chr3 HAVANA gene 153376831 153377562 382.0 + 0 ENSG00000241912.1 lincRNA AC078788.2 1 OTTHUMG00000159626.1 +45228 chr3 ENSEMBL gene 153471466 153471571 106.0 - 0 ENSG00000207323.1 snRNA RNU6-901P 3 +45229 chr3 HAVANA gene 153431856 153502697 1283.0 + 0 ENSG00000237787.5 lincRNA C3orf79 2 OTTHUMG00000159629.2 +45230 chr3 ENSEMBL gene 153607377 153607479 103.0 + 0 ENSG00000200162.1 misc_RNA RF00019 3 +45231 chr3 HAVANA gene 153881526 153940836 703.0 + 0 ENSG00000243486.1 lincRNA AC068985.1 2 OTTHUMG00000159649.1 +45232 chr3 HAVANA gene 153384934 153980186 2816.0 - 0 ENSG00000238755.3 processed_transcript LINC02006 2 OTTHUMG00000159707.3 ncRNA_host +45233 chr3 ENSEMBL gene 154007367 154007502 136.0 - 0 ENSG00000201398.1 snoRNA RF00096 3 +45234 chr3 HAVANA gene 154023835 154024298 464.0 + 0 ENSG00000240068.1 processed_pseudogene RPL21P42 1 OTTHUMG00000157416.1 pseudo_consens +45235 chr3 HAVANA gene 154024401 154121332 6580.0 - 0 ENSG00000243069.7 processed_transcript ARHGEF26-AS1 2 OTTHUMG00000159647.5 +45236 chr3 HAVANA gene 154121003 154257827 5489.0 + 0 ENSG00000114790.12 protein_coding ARHGEF26 2 OTTHUMG00000159098.3 +45237 chr3 HAVANA gene 154272546 154324497 10562.0 - 0 ENSG00000174953.13 protein_coding DHX36 1 OTTHUMG00000159109.3 +45238 chr3 ENSEMBL gene 154329716 154329819 104.0 + 0 ENSG00000271922.1 snoRNA RF01210 3 +45239 chr3 HAVANA gene 154334809 154337047 2239.0 - 0 ENSG00000279305.1 TEC AC134026.1 2 OTTHUMG00000175838.1 +45240 chr3 HAVANA gene 154352136 154354799 2193.0 - 0 ENSG00000240048.1 processed_pseudogene DDX50P2 1 OTTHUMG00000159130.1 pseudo_consens,overlapping_locus +45241 chr3 HAVANA gene 154337672 154429715 2323.0 - 0 ENSG00000174948.5 protein_coding GPR149 2 OTTHUMG00000159131.1 overlapping_locus +45242 chr3 HAVANA gene 154511535 154539309 279.0 - 0 ENSG00000243861.1 lincRNA AC092994.1 2 OTTHUMG00000159128.1 +45243 chr3 HAVANA gene 154651656 154652423 768.0 - 0 ENSG00000243154.1 processed_pseudogene SYPL1P1 1 OTTHUMG00000159129.1 pseudo_consens +45244 chr3 HAVANA gene 154657294 154657563 270.0 + 0 ENSG00000242151.1 processed_pseudogene DYNLL1P5 1 OTTHUMG00000159126.1 pseudo_consens +45245 chr3 HAVANA gene 154676588 154677119 532.0 - 0 ENSG00000240601.1 processed_pseudogene RPL9P15 1 OTTHUMG00000157417.1 pseudo_consens +45246 chr3 HAVANA gene 154827016 154861017 351.0 - 0 ENSG00000243969.1 lincRNA AC073359.2 2 OTTHUMG00000159127.1 +45247 chr3 HAVANA gene 154969283 154970223 521.0 - 0 ENSG00000243953.1 lincRNA AC073359.1 2 OTTHUMG00000159132.1 +45248 chr3 HAVANA gene 155158370 155183285 828.0 - 0 ENSG00000240666.2 antisense MME-AS1 1 OTTHUMG00000158456.2 +45249 chr3 HAVANA gene 155024124 155183729 9620.0 + 0 ENSG00000196549.10 protein_coding MME 1 OTTHUMG00000158455.4 +45250 chr3 HAVANA gene 155240945 155243144 925.0 + 0 ENSG00000241336.1 lincRNA LINC01487 2 OTTHUMG00000158465.1 +45251 chr3 HAVANA gene 155290229 155293775 873.0 - 0 ENSG00000240045.1 protein_coding DWORF 1 OTTHUMG00000158471.2 +45252 chr3 HAVANA gene 155291188 155294176 444.0 + 0 ENSG00000242790.1 lincRNA AC104831.1 2 OTTHUMG00000158468.1 +45253 chr3 HAVANA gene 155309427 155309807 381.0 - 0 ENSG00000239443.1 processed_pseudogene PABPC1P10 1 OTTHUMG00000158466.1 pseudo_consens +45254 chr3 HAVANA gene 155375683 155375790 108.0 - 0 ENSG00000248772.1 unprocessed_pseudogene AC108729.3 2 OTTHUMG00000158469.1 overlapping_locus +45255 chr3 HAVANA gene 155401329 155403399 840.0 - 0 ENSG00000243518.1 processed_pseudogene AC108729.2 1 OTTHUMG00000158467.1 pseudo_consens,overlapping_locus +45256 chr3 HAVANA gene 155431229 155433398 947.0 - 0 ENSG00000242152.1 processed_pseudogene AC108729.1 2 OTTHUMG00000158470.1 overlapping_locus +45257 chr3 ENSEMBL gene 155437538 155437823 286.0 - 0 ENSG00000272096.2 misc_RNA RN7SL715P 3 +45258 chr3 HAVANA gene 155449184 155457753 1308.0 + 0 ENSG00000239508.1 antisense PLCH1-AS1 1 OTTHUMG00000158476.1 +45259 chr3 HAVANA gene 155485803 155487121 408.0 + 0 ENSG00000242925.1 antisense PLCH1-AS2 1 OTTHUMG00000158497.2 +45260 chr3 HAVANA gene 155657760 155658612 853.0 + 0 ENSG00000239212.2 processed_pseudogene RPL6P7 1 OTTHUMG00000157419.2 pseudo_consens +45261 chr3 HAVANA gene 155742142 155743726 1585.0 - 0 ENSG00000214919.3 sense_intronic AC104472.1 2 OTTHUMG00000187172.1 overlapping_locus +45262 chr3 HAVANA gene 155375580 155745067 7173.0 - 0 ENSG00000114805.17 protein_coding PLCH1 2 OTTHUMG00000158477.4 ncRNA_host,overlapping_locus +45263 chr3 HAVANA gene 155760617 155761217 601.0 + 0 ENSG00000241307.1 processed_pseudogene AC104472.2 1 OTTHUMG00000157420.1 pseudo_consens +45264 chr3 HAVANA gene 155762617 155806351 2134.0 - 0 ENSG00000174928.15 protein_coding C3orf33 2 OTTHUMG00000158496.2 +45265 chr3 HAVANA gene 155763043 155854442 3746.0 - 0 ENSG00000284952.1 protein_coding AC104472.3 2 OTTHUMG00000192576.1 overlapping_locus +45266 chr3 HAVANA gene 155821024 155854456 10040.0 - 0 ENSG00000169359.14 protein_coding SLC33A1 1 OTTHUMG00000158481.7 +45267 chr3 HAVANA gene 155870536 155944026 8885.0 + 0 ENSG00000163655.15 protein_coding GMPS 2 OTTHUMG00000158551.2 +45268 chr3 HAVANA gene 155987304 155988176 873.0 + 0 ENSG00000240489.1 processed_pseudogene SETP14 1 OTTHUMG00000158545.1 pseudo_consens +45269 chr3 HAVANA gene 156019646 156037647 1743.0 + 0 ENSG00000174930.4 unitary_pseudogene VN2R1P 2 OTTHUMG00000154694.1 +45270 chr3 HAVANA gene 156044155 156044948 794.0 - 0 ENSG00000242017.1 processed_pseudogene ALG1L15P 1 OTTHUMG00000158546.1 pseudo_consens +45271 chr3 HAVANA gene 156111432 156114198 2127.0 - 0 ENSG00000242537.1 processed_pseudogene MRE11P1 1 OTTHUMG00000158550.1 pseudo_consens +45272 chr3 HAVANA gene 156175852 156176911 1060.0 - 0 ENSG00000227709.4 processed_pseudogene AC091607.1 1 OTTHUMG00000158547.1 pseudo_consens +45273 chr3 HAVANA gene 156215560 156227883 538.0 - 0 ENSG00000240596.1 antisense KCNAB1-AS2 2 OTTHUMG00000158548.1 +45274 chr3 HAVANA gene 156441157 156446905 456.0 - 0 ENSG00000242370.1 antisense KCNAB1-AS1 2 OTTHUMG00000158616.1 +45275 chr3 HAVANA gene 156523740 156524247 508.0 - 0 ENSG00000272990.1 antisense AC084036.1 2 OTTHUMG00000186047.1 +45276 chr3 HAVANA gene 156037701 156539138 6852.0 + 0 ENSG00000169282.17 protein_coding KCNAB1 2 OTTHUMG00000158552.4 +45277 chr3 HAVANA gene 156540140 156555184 4627.0 - 0 ENSG00000114850.6 protein_coding SSR3 1 OTTHUMG00000158632.1 +45278 chr3 HAVANA gene 156671862 156674378 1254.0 - 0 ENSG00000243926.1 bidirectional_promoter_lncRNA TIPARP-AS1 1 OTTHUMG00000158643.1 +45279 chr3 HAVANA gene 156673235 156706770 5048.0 + 0 ENSG00000163659.12 protein_coding TIPARP 2 OTTHUMG00000158646.2 +45280 chr3 HAVANA gene 156713884 156714928 1045.0 - 0 ENSG00000174912.7 processed_pseudogene METTL15P1 1 OTTHUMG00000158645.1 pseudo_consens +45281 chr3 HAVANA gene 156809551 156810732 1182.0 - 0 ENSG00000230457.3 processed_pseudogene PA2G4P4 1 OTTHUMG00000158644.1 pseudo_consens,overlapping_locus +45282 chr3 HAVANA gene 156747346 156817062 3822.0 - 0 ENSG00000240875.5 lincRNA LINC00886 2 OTTHUMG00000158647.1 overlapping_locus +45283 chr3 HAVANA gene 156977558 156977825 268.0 + 0 ENSG00000241879.1 processed_pseudogene KLF3P2 2 OTTHUMG00000158649.1 overlapping_locus +45284 chr3 HAVANA gene 156988117 156988712 596.0 - 0 ENSG00000239706.1 processed_pseudogene AC117392.1 1 OTTHUMG00000158650.1 pseudo_consens +45285 chr3 ENSEMBL gene 157017342 157017696 355.0 + 0 ENSG00000222499.1 misc_RNA RN7SKP177 3 +45286 chr3 HAVANA gene 156825481 157046129 5602.0 + 0 ENSG00000197980.12 protein_coding LEKR1 1 OTTHUMG00000160130.2 ncRNA_host,overlapping_locus +45287 chr3 HAVANA gene 157081841 157088547 1497.0 + 0 ENSG00000241544.1 lincRNA LINC02029 1 OTTHUMG00000158714.1 +45288 chr3 HAVANA gene 157089881 157101135 1269.0 + 0 ENSG00000241135.5 lincRNA LINC00881 1 OTTHUMG00000158712.1 +45289 chr3 HAVANA gene 157081667 157123004 2018.0 - 0 ENSG00000243629.1 lincRNA LINC00880 2 OTTHUMG00000158717.1 +45290 chr3 ENSEMBL gene 157153548 157153640 93.0 + 0 ENSG00000201778.1 misc_RNA RF00019 3 +45291 chr3 HAVANA gene 157146508 157160760 8729.0 - 0 ENSG00000163660.11 protein_coding CCNL1 2 OTTHUMG00000158713.2 +45292 chr3 HAVANA gene 157162663 157163932 1270.0 - 0 ENSG00000244515.1 processed_pseudogene KRT18P34 1 OTTHUMG00000158716.1 pseudo_consens +45293 chr3 HAVANA gene 157163452 157169133 320.0 + 0 ENSG00000241770.1 antisense AC104411.1 1 OTTHUMG00000158715.1 +45294 chr3 ENSEMBL gene 157173918 157174040 123.0 - 0 ENSG00000222675.1 rRNA_pseudogene RNA5SP146 3 +45295 chr3 HAVANA gene 157230320 157231208 889.0 - 0 ENSG00000270981.1 processed_pseudogene AC092944.2 1 OTTHUMG00000184404.1 pseudo_consens +45296 chr3 HAVANA gene 157175223 157381265 1544.0 + 0 ENSG00000243176.5 processed_transcript AC092944.1 2 OTTHUMG00000158749.1 +45297 chr3 HAVANA gene 157436789 157443628 1940.0 + 0 ENSG00000163661.3 protein_coding PTX3 2 OTTHUMG00000158750.1 +45298 chr3 HAVANA gene 157259742 157533619 6554.0 - 0 ENSG00000197415.11 protein_coding VEPH1 1 OTTHUMG00000158711.5 +45299 chr3 HAVANA gene 157543246 157677749 3180.0 + 0 ENSG00000174899.10 protein_coding PQLC2L 1 OTTHUMG00000158748.1 +45300 chr3 ENSEMBL gene 157930492 157930725 234.0 - 0 ENSG00000251751.1 misc_RNA RN7SKP46 3 +45301 chr3 HAVANA gene 157976561 157978136 466.0 - 0 ENSG00000239716.1 lincRNA AC079943.1 1 OTTHUMG00000158756.1 +45302 chr3 HAVANA gene 158016216 158088997 835.0 - 0 ENSG00000242536.1 lincRNA AC079943.2 2 OTTHUMG00000158757.2 +45303 chr3 HAVANA gene 158095954 158106503 5045.0 - 0 ENSG00000168779.19 protein_coding SHOX2 2 OTTHUMG00000158755.7 +45304 chr3 HAVANA gene 158275809 158276421 613.0 - 0 ENSG00000241723.1 processed_pseudogene AC074276.1 1 OTTHUMG00000157421.1 pseudo_consens +45305 chr3 HAVANA gene 158336430 158336777 348.0 - 0 ENSG00000277143.1 processed_pseudogene AC074276.2 2 OTTHUMG00000187571.1 +45306 chr3 HAVANA gene 158496561 158496934 374.0 + 0 ENSG00000243314.1 processed_pseudogene AC106707.2 1 OTTHUMG00000157422.1 pseudo_consens,overlapping_locus +45307 chr3 HAVANA gene 158105855 158545730 5117.0 + 0 ENSG00000174891.12 protein_coding RSRC1 1 OTTHUMG00000158758.12 overlapping_locus +45308 chr3 HAVANA gene 158545220 158571066 1696.0 - 0 ENSG00000243150.5 antisense AC106707.1 2 OTTHUMG00000158791.1 +45309 chr3 HAVANA gene 158571163 158607252 3569.0 + 0 ENSG00000178053.17 protein_coding MLF1 1 OTTHUMG00000158775.10 +45310 chr3 HAVANA gene 158609610 158610857 819.0 - 0 ENSG00000243025.1 processed_pseudogene MTAPP1 1 OTTHUMG00000158805.1 pseudo_consens +45311 chr3 HAVANA gene 158626656 158626849 194.0 - 0 ENSG00000243165.1 processed_pseudogene AC025033.1 2 OTTHUMG00000158806.1 +45312 chr3 HAVANA gene 158645822 158672693 1504.0 - 0 ENSG00000079257.7 protein_coding LXN 2 OTTHUMG00000158807.1 +45313 chr3 HAVANA gene 158644278 158692575 9032.0 + 0 ENSG00000168827.14 protein_coding GFM1 1 OTTHUMG00000158804.4 +45314 chr3 HAVANA gene 158693120 158693768 649.0 - 0 ENSG00000272087.1 lincRNA AC080013.4 2 OTTHUMG00000185347.1 +45315 chr3 HAVANA gene 158695367 158695581 215.0 + 0 ENSG00000272440.1 lincRNA AC080013.6 2 OTTHUMG00000185348.1 +45316 chr3 HAVANA gene 158696892 158732696 2236.0 - 0 ENSG00000118849.9 protein_coding RARRES1 1 OTTHUMG00000158834.2 +45317 chr3 HAVANA gene 158763431 158763753 323.0 + 0 ENSG00000243675.1 processed_pseudogene AC080013.2 1 OTTHUMG00000157423.1 pseudo_consens,overlapping_locus +45318 chr3 HAVANA gene 158782547 158783124 578.0 + 0 ENSG00000271778.1 sense_intronic AC080013.3 2 OTTHUMG00000185565.1 overlapping_locus +45319 chr3 HAVANA gene 158732263 158784070 4177.0 + 0 ENSG00000240207.6 antisense AC080013.1 1 OTTHUMG00000158833.2 overlapping_locus +45320 chr3 HAVANA gene 158801257 158801935 679.0 - 0 ENSG00000272247.1 antisense AC080013.5 2 OTTHUMG00000185566.1 +45321 chr3 HAVANA gene 158732198 158829719 5288.0 + 0 ENSG00000118855.18 protein_coding MFSD1 1 OTTHUMG00000158835.8 overlapping_locus +45322 chr3 HAVANA gene 158841093 158841960 868.0 - 0 ENSG00000232374.5 processed_pseudogene GPR79 2 OTTHUMG00000158842.1 +45323 chr3 HAVANA gene 158869898 158871821 1924.0 + 0 ENSG00000279311.1 TEC AC092999.1 2 OTTHUMG00000175840.1 +45324 chr3 HAVANA gene 158962928 159266307 2923.0 + 0 ENSG00000214216.10 protein_coding IQCJ 1 OTTHUMG00000166440.1 overlapping_locus +45325 chr3 ENSEMBL gene 159282646 159282734 89.0 + 0 ENSG00000263634.1 miRNA MIR3919 3 +45326 chr3 HAVANA gene 159386756 159387440 685.0 - 0 ENSG00000244249.1 processed_pseudogene AC063955.1 1 OTTHUMG00000157425.1 pseudo_consens +45327 chr3 HAVANA gene 159721524 159722401 878.0 - 0 ENSG00000243116.1 processed_pseudogene AC092943.1 1 OTTHUMG00000158932.1 pseudo_consens +45328 chr3 HAVANA gene 159765387 159768612 592.0 - 0 ENSG00000241211.1 antisense IQCJ-SCHIP1-AS1 1 OTTHUMG00000158933.1 +45329 chr3 ENSEMBL gene 159808416 159808570 155.0 - 0 ENSG00000252763.1 snRNA RNU2-31P 3 +45330 chr3 HAVANA gene 159839861 159897360 7645.0 + 0 ENSG00000151967.18 protein_coding SCHIP1 1 OTTHUMG00000158934.2 overlapping_locus +45331 chr3 HAVANA gene 158962235 159897366 4409.0 + 0 ENSG00000283154.2 protein_coding IQCJ-SCHIP1 2 OTTHUMG00000162426.3 ncRNA_host,overlapping_locus +45332 chr3 HAVANA gene 159988750 159996019 2040.0 + 0 ENSG00000168811.6 protein_coding IL12A 2 OTTHUMG00000158942.2 +45333 chr3 HAVANA gene 160016024 160031423 740.0 + 0 ENSG00000242107.2 lincRNA LINC01100 1 OTTHUMG00000158954.2 +45334 chr3 HAVANA gene 160100850 160102793 1944.0 + 0 ENSG00000184100.6 processed_pseudogene BRD7P2 1 OTTHUMG00000158952.1 pseudo_consens +45335 chr3 HAVANA gene 159909382 160225299 8073.0 - 0 ENSG00000244040.6 antisense IL12A-AS1 2 OTTHUMG00000158951.2 +45336 chr3 HAVANA gene 160225496 160228213 2718.0 + 0 ENSG00000180044.5 protein_coding C3orf80 2 OTTHUMG00000158950.3 +45337 chr3 HAVANA gene 160342685 160343015 331.0 + 0 ENSG00000243687.1 processed_pseudogene AC079594.1 1 OTTHUMG00000157339.1 pseudo_consens +45338 chr3 HAVANA gene 160256986 160399880 7175.0 - 0 ENSG00000068885.14 protein_coding IFT80 1 OTTHUMG00000158953.8 overlapping_locus +45339 chr3 ENSEMBL gene 160404588 160404685 98.0 + 0 ENSG00000207779.1 miRNA MIR15B 3 +45340 chr3 ENSEMBL gene 160404745 160404825 81.0 + 0 ENSG00000198987.1 miRNA MIR16-2 3 +45341 chr3 HAVANA gene 160399274 160434962 8457.0 + 0 ENSG00000113810.15 protein_coding SMC4 1 OTTHUMG00000159006.7 ncRNA_host +45342 chr3 HAVANA gene 160227454 160449829 3360.0 - 0 ENSG00000248710.1 protein_coding AC079594.2 2 OTTHUMG00000162252.1 overlapping_locus +45343 chr3 HAVANA gene 160452598 160453403 806.0 + 0 ENSG00000244009.1 processed_pseudogene B3GAT3P1 1 OTTHUMG00000159032.1 pseudo_consens +45344 chr3 ENSEMBL gene 160472348 160472416 69.0 - 0 ENSG00000238427.1 snRNA RNU7-136P 3 +45345 chr3 HAVANA gene 160432445 160485773 7865.0 - 0 ENSG00000213186.7 protein_coding TRIM59 2 OTTHUMG00000159034.3 ncRNA_host,overlapping_locus +45346 chr3 ENSEMBL gene 160514907 160515236 330.0 - 0 ENSG00000238741.1 scaRNA SCARNA7 3 +45347 chr3 HAVANA gene 160494995 160565588 9413.0 - 0 ENSG00000186432.8 protein_coding KPNA4 1 OTTHUMG00000159033.2 ncRNA_host +45348 chr3 HAVANA gene 160565447 160569248 2047.0 + 0 ENSG00000229320.3 transcribed_processed_pseudogene KRT8P12 1 OTTHUMG00000159030.1 pseudo_consens +45349 chr3 HAVANA gene 160584945 160585787 843.0 + 0 ENSG00000242285.1 processed_pseudogene RPL6P8 1 OTTHUMG00000157340.1 pseudo_consens +45350 chr3 HAVANA gene 160677159 160678452 1294.0 + 0 ENSG00000179674.3 protein_coding ARL14 2 OTTHUMG00000159031.1 retrogene +45351 chr3 ENSEMBL gene 160696929 160697060 132.0 + 0 ENSG00000207084.1 snoRNA RF00139 3 +45352 chr3 HAVANA gene 160753428 160755142 1715.0 - 0 ENSG00000260572.1 antisense AC069224.1 2 OTTHUMG00000175842.1 +45353 chr3 HAVANA gene 160755602 161078907 12447.0 + 0 ENSG00000163590.13 protein_coding PPM1L 2 OTTHUMG00000159048.2 +45354 chr3 HAVANA gene 161083883 161105384 4183.0 - 0 ENSG00000169255.14 protein_coding B3GALNT1 1 OTTHUMG00000159064.5 +45355 chr3 HAVANA gene 161222911 161223147 237.0 - 0 ENSG00000271052.1 processed_pseudogene AC108738.1 1 OTTHUMG00000184355.1 pseudo_consens +45356 chr3 HAVANA gene 161104696 161253532 4869.0 + 0 ENSG00000169251.12 protein_coding NMD3 2 OTTHUMG00000159063.5 +45357 chr3 HAVANA gene 161324913 161326219 1307.0 - 0 ENSG00000240138.1 processed_pseudogene EEF1GP4 1 OTTHUMG00000159071.1 pseudo_consens +45358 chr3 HAVANA gene 161328924 161330238 1315.0 - 0 ENSG00000243838.1 processed_pseudogene PSMC1P7 1 OTTHUMG00000159070.1 pseudo_consens +45359 chr3 HAVANA gene 161344792 161372880 3745.0 - 0 ENSG00000196542.8 protein_coding SPTSSB 2 OTTHUMG00000159073.1 +45360 chr3 HAVANA gene 161429127 161429597 471.0 - 0 ENSG00000234851.4 processed_pseudogene RPL23AP42 1 OTTHUMG00000159072.1 pseudo_consens +45361 chr3 HAVANA gene 161429112 161429613 248.0 + 0 ENSG00000269888.1 lincRNA AC112491.1 2 OTTHUMG00000183890.1 overlapping_locus +45362 chr3 HAVANA gene 161426427 161448242 2845.0 + 0 ENSG00000240567.1 lincRNA LINC02067 2 OTTHUMG00000159075.2 overlapping_locus +45363 chr3 HAVANA gene 161496808 161503942 1434.0 + 0 ENSG00000182447.4 protein_coding OTOL1 2 OTTHUMG00000159074.2 +45364 chr3 HAVANA gene 161816909 161821908 483.0 - 0 ENSG00000240354.1 lincRNA AC131211.1 1 OTTHUMG00000159088.1 +45365 chr3 HAVANA gene 162486541 162486949 409.0 - 0 ENSG00000241874.1 processed_pseudogene TOMM22P6 1 OTTHUMG00000159087.1 pseudo_consens +45366 chr3 HAVANA gene 162601627 162601792 166.0 + 0 ENSG00000243044.1 processed_pseudogene AC128716.1 2 OTTHUMG00000159086.1 +45367 chr3 HAVANA gene 163115429 163116186 758.0 + 0 ENSG00000244571.1 processed_pseudogene RPS6P4 1 OTTHUMG00000157334.1 pseudo_consens,overlapping_locus +45368 chr3 HAVANA gene 163026396 163232149 1834.0 + 0 ENSG00000241168.1 lincRNA AC128685.1 2 OTTHUMG00000158020.1 overlapping_locus +45369 chr3 HAVANA gene 163127923 163361563 3079.0 - 0 ENSG00000241369.5 lincRNA LINC01192 2 OTTHUMG00000158021.3 +45370 chr3 ENSEMBL gene 163470205 163470266 62.0 - 0 ENSG00000238924.2 snRNA RNU7-82P 3 +45371 chr3 HAVANA gene 163475067 163479365 749.0 + 0 ENSG00000240792.1 lincRNA AC079910.1 2 OTTHUMG00000158042.1 +45372 chr3 HAVANA gene 164001606 164002465 860.0 - 0 ENSG00000214210.4 processed_pseudogene AC084017.1 1 OTTHUMG00000158066.1 pseudo_consens +45373 chr3 ENSEMBL gene 164171471 164171556 86.0 - 0 ENSG00000221251.1 miRNA MIR1263 3 +45374 chr3 HAVANA gene 164670878 164686076 576.0 - 0 ENSG00000241636.1 lincRNA LINC01323 2 OTTHUMG00000158384.1 +45375 chr3 HAVANA gene 164714095 164831480 844.0 - 0 ENSG00000241767.2 lincRNA LINC01324 1 OTTHUMG00000158064.2 +45376 chr3 HAVANA gene 164978898 165078495 6138.0 - 0 ENSG00000090402.7 protein_coding SI 2 OTTHUMG00000158065.1 +45377 chr3 ENSEMBL gene 165122713 165122823 111.0 - 0 ENSG00000200052.1 misc_RNA RF00019 3 +45378 chr3 HAVANA gene 165150006 165158062 1948.0 - 0 ENSG00000239205.1 lincRNA LINC02023 2 OTTHUMG00000158073.1 +45379 chr3 HAVANA gene 165186720 165197109 4892.0 - 0 ENSG00000121871.3 protein_coding SLITRK3 2 OTTHUMG00000158072.4 +45380 chr3 HAVANA gene 165206960 165655423 1860.0 + 0 ENSG00000244128.5 lincRNA LINC01322 2 OTTHUMG00000158130.2 +45381 chr3 HAVANA gene 165772904 165837472 3082.0 - 0 ENSG00000114200.9 protein_coding BCHE 1 OTTHUMG00000158131.2 +45382 chr3 HAVANA gene 166160021 166160370 350.0 - 0 ENSG00000242178.1 processed_pseudogene MTND4P17 2 OTTHUMG00000158171.1 +45383 chr3 HAVANA gene 166160414 166160704 291.0 - 0 ENSG00000240084.1 processed_pseudogene MTND4LP10 2 OTTHUMG00000158214.1 +45384 chr3 HAVANA gene 166160777 166161119 343.0 - 0 ENSG00000240824.1 processed_pseudogene MTND3P7 2 OTTHUMG00000158212.1 +45385 chr3 HAVANA gene 166161203 166161968 766.0 - 0 ENSG00000242456.1 processed_pseudogene MTCO3P38 2 OTTHUMG00000158211.2 +45386 chr3 HAVANA gene 166181313 166181820 508.0 - 0 ENSG00000242326.1 processed_pseudogene MCUR1P2 1 OTTHUMG00000158169.1 pseudo_consens +45387 chr3 HAVANA gene 166293756 166294353 598.0 + 0 ENSG00000244429.1 processed_pseudogene AC104629.1 1 OTTHUMG00000158170.1 pseudo_consens +45388 chr3 HAVANA gene 166569693 166570763 755.0 - 0 ENSG00000244321.1 lincRNA LINC01326 2 OTTHUMG00000158209.1 +45389 chr3 HAVANA gene 166605188 166605455 268.0 + 0 ENSG00000274149.1 processed_pseudogene AC072046.2 1 OTTHUMG00000184304.2 pseudo_consens +45390 chr3 ENSEMBL gene 166670029 166670122 94.0 - 0 ENSG00000251759.1 misc_RNA RN7SKP298 3 +45391 chr3 HAVANA gene 166691187 166691712 526.0 + 0 ENSG00000224962.4 processed_pseudogene PSAT1P4 1 OTTHUMG00000158210.1 pseudo_consens +45392 chr3 HAVANA gene 166721458 166721610 153.0 + 0 ENSG00000240458.1 processed_pseudogene AC072046.1 1 OTTHUMG00000158213.1 pseudo_consens +45393 chr3 HAVANA gene 166811009 166811567 559.0 + 0 ENSG00000231516.3 processed_pseudogene CBX1P5 1 OTTHUMG00000158232.1 pseudo_consens +45394 chr3 HAVANA gene 166835021 166844956 789.0 - 0 ENSG00000240033.1 lincRNA AC069439.2 1 OTTHUMG00000158283.1 +45395 chr3 HAVANA gene 166861944 166862110 167.0 + 0 ENSG00000239227.1 processed_pseudogene AC069439.1 2 OTTHUMG00000158285.1 +45396 chr3 HAVANA gene 167065831 167066320 490.0 + 0 ENSG00000220343.5 processed_pseudogene PPIAP74 1 OTTHUMG00000158286.1 pseudo_consens +45397 chr3 HAVANA gene 167240287 167381346 3972.0 - 0 ENSG00000169064.12 protein_coding ZBBX 1 OTTHUMG00000133560.6 +45398 chr3 HAVANA gene 167392796 167408519 535.0 + 0 ENSG00000241669.1 lincRNA LINC01327 2 OTTHUMG00000158284.1 +45399 chr3 HAVANA gene 167441789 167479004 2835.0 - 0 ENSG00000114204.14 protein_coding SERPINI2 1 OTTHUMG00000158231.2 overlapping_locus +45400 chr3 HAVANA gene 167478684 167653983 3891.0 - 0 ENSG00000174776.11 protein_coding WDR49 1 OTTHUMG00000158290.7 overlapping_locus +45401 chr3 HAVANA gene 167694355 167694642 288.0 - 0 ENSG00000241120.1 processed_pseudogene HMGN1P8 2 OTTHUMG00000158449.1 overlapping_locus +45402 chr3 HAVANA gene 167683298 167734939 3275.0 - 0 ENSG00000114209.14 protein_coding PDCD10 1 OTTHUMG00000158415.5 overlapping_locus +45403 chr3 HAVANA gene 167735243 167825568 2418.0 + 0 ENSG00000163536.12 protein_coding SERPINI1 2 OTTHUMG00000158450.11 +45404 chr3 HAVANA gene 167866500 167870977 558.0 - 0 ENSG00000244706.2 lincRNA AC026353.1 2 OTTHUMG00000158500.3 +45405 chr3 HAVANA gene 167888414 167888715 302.0 + 0 ENSG00000239238.1 processed_pseudogene MEMO1P3 1 OTTHUMG00000158501.1 pseudo_consens +45406 chr3 HAVANA gene 167864773 167924011 5387.0 + 0 ENSG00000244227.7 transcribed_unitary_pseudogene LRRC77P 1 OTTHUMG00000158503.3 +45407 chr3 HAVANA gene 167956311 167956616 306.0 - 0 ENSG00000242036.1 processed_pseudogene AC128713.1 1 OTTHUMG00000158560.1 pseudo_consens +45408 chr3 HAVANA gene 167958744 167959082 339.0 + 0 ENSG00000241203.1 processed_pseudogene HMGN2P26 2 OTTHUMG00000158561.1 +45409 chr3 HAVANA gene 168008677 168095975 4647.0 - 0 ENSG00000173905.8 protein_coding GOLIM4 1 OTTHUMG00000158554.2 +45410 chr3 HAVANA gene 168288553 168291228 545.0 + 0 ENSG00000241882.1 lincRNA AC124893.1 2 OTTHUMG00000158562.1 overlapping_locus +45411 chr3 ENSEMBL gene 168475198 168475388 191.0 + 0 ENSG00000222357.1 snRNA RNU2-20P 3 +45412 chr3 ENSEMBL gene 168551854 168551949 96.0 + 0 ENSG00000207717.1 miRNA MIR551B 3 +45413 chr3 HAVANA gene 168666559 168667423 865.0 + 0 ENSG00000226765.1 processed_pseudogene RPSAP33 1 OTTHUMG00000157292.1 pseudo_consens +45414 chr3 HAVANA gene 168249522 168830599 4658.0 + 0 ENSG00000206120.11 transcribed_unitary_pseudogene EGFEM1P 1 OTTHUMG00000154721.3 pseudo_consens +45415 chr3 HAVANA gene 168858659 168859130 472.0 - 0 ENSG00000231688.1 processed_pseudogene RPL21P43 1 OTTHUMG00000157291.1 pseudo_consens +45416 chr3 HAVANA gene 168903366 168921996 710.0 + 0 ENSG00000242268.2 lincRNA LINC02082 2 OTTHUMG00000158577.1 +45417 chr3 HAVANA gene 168927475 168927919 445.0 + 0 ENSG00000272797.1 lincRNA AC092954.1 2 OTTHUMG00000186053.1 +45418 chr3 HAVANA gene 168928169 168928598 430.0 + 0 ENSG00000273177.1 lincRNA AC092954.2 2 OTTHUMG00000186054.1 +45419 chr3 HAVANA gene 169003074 169005466 429.0 + 0 ENSG00000241383.1 lincRNA LINC01997 2 OTTHUMG00000158576.2 +45420 chr3 HAVANA gene 169447867 169477052 535.0 + 0 ENSG00000241479.1 antisense AC074033.1 2 OTTHUMG00000158687.1 +45421 chr3 HAVANA gene 169483671 169484080 410.0 - 0 ENSG00000213178.3 processed_pseudogene RPL22P1 2 OTTHUMG00000157287.1 overlapping_locus +45422 chr3 HAVANA gene 169613510 169623951 513.0 - 0 ENSG00000242795.2 sense_intronic AC007849.1 1 OTTHUMG00000158688.1 overlapping_locus +45423 chr3 HAVANA gene 169083499 169663618 9103.0 - 0 ENSG00000085276.17 protein_coding MECOM 1 OTTHUMG00000158596.7 overlapping_locus +45424 chr3 HAVANA gene 169709295 169709765 471.0 + 0 ENSG00000244381.1 processed_pseudogene AC007849.2 1 OTTHUMG00000158630.1 pseudo_consens +45425 chr3 ENSEMBL gene 169720187 169720293 107.0 - 0 ENSG00000206777.1 snRNA RNU6-637P 3 +45426 chr3 ENSEMBL gene 169764610 169765047 438.0 - 0 ENSG00000277925.1 misc_RNA RF00024 3 +45427 chr3 HAVANA gene 169764520 169765060 541.0 - 0 ENSG00000270141.3 lincRNA TERC 2 OTTHUMG00000184024.1 ncRNA_host +45428 chr3 HAVANA gene 169766921 169769895 2005.0 - 0 ENSG00000184378.2 protein_coding ACTRT3 2 OTTHUMG00000184025.1 retrogene +45429 chr3 HAVANA gene 169769649 169772043 843.0 + 0 ENSG00000269889.1 antisense AC078802.1 2 OTTHUMG00000184026.1 +45430 chr3 HAVANA gene 169777192 169780334 3143.0 - 0 ENSG00000269984.1 antisense AC078795.1 2 OTTHUMG00000184028.1 +45431 chr3 HAVANA gene 169772831 169789716 5730.0 + 0 ENSG00000085274.15 protein_coding MYNN 2 OTTHUMG00000184027.1 +45432 chr3 HAVANA gene 169793495 169793966 472.0 + 0 ENSG00000270135.1 antisense AC078795.3 2 OTTHUMG00000184029.1 +45433 chr3 HAVANA gene 169794962 169796213 1252.0 + 0 ENSG00000270096.1 antisense AC078795.2 2 OTTHUMG00000184030.1 +45434 chr3 HAVANA gene 169793428 169812986 4851.0 - 0 ENSG00000171757.15 protein_coding LRRC34 1 OTTHUMG00000164419.3 +45435 chr3 HAVANA gene 169821922 169837775 1827.0 + 0 ENSG00000188306.6 protein_coding LRRIQ4 2 OTTHUMG00000164420.1 +45436 chr3 HAVANA gene 169839179 169869930 3113.0 - 0 ENSG00000114248.9 protein_coding LRRC31 1 OTTHUMG00000164421.1 +45437 chr3 HAVANA gene 169902980 169904260 1281.0 - 0 ENSG00000240128.1 processed_pseudogene KRT18P43 1 OTTHUMG00000158732.1 pseudo_consens +45438 chr3 HAVANA gene 169931998 169933229 1232.0 + 0 ENSG00000244039.1 processed_pseudogene AC008040.3 1 OTTHUMG00000158731.1 pseudo_consens,overlapping_locus +45439 chr3 HAVANA gene 169911572 169939175 2512.0 + 0 ENSG00000187033.9 protein_coding SAMD7 2 OTTHUMG00000158730.1 overlapping_locus +45440 chr3 HAVANA gene 169945987 169946754 768.0 - 0 ENSG00000244193.1 transcribed_processed_pseudogene AC008040.4 1 OTTHUMG00000158729.1 pseudo_consens,overlapping_locus +45441 chr3 HAVANA gene 169939353 169966734 7977.0 - 0 ENSG00000239219.2 antisense AC008040.1 1 OTTHUMG00000158728.3 overlapping_locus +45442 chr3 HAVANA gene 169978536 169985715 346.0 - 0 ENSG00000240373.1 antisense SEC62-AS1 2 OTTHUMG00000158754.1 +45443 chr3 HAVANA gene 169966635 169998373 7928.0 + 0 ENSG00000008952.16 protein_coding SEC62 1 OTTHUMG00000158753.4 +45444 chr3 ENSEMBL gene 170057301 170057429 129.0 + 0 ENSG00000201342.1 snRNA RNU4-38P 3 +45445 chr3 HAVANA gene 170062244 170062951 708.0 + 0 ENSG00000242583.1 processed_pseudogene AC008040.2 1 OTTHUMG00000158778.1 pseudo_consens,overlapping_locus +45446 chr3 HAVANA gene 170037929 170085403 4458.0 + 0 ENSG00000173890.16 protein_coding GPR160 1 OTTHUMG00000158776.4 ncRNA_host,overlapping_locus +45447 chr3 HAVANA gene 170087810 170089590 1781.0 + 0 ENSG00000268220.1 antisense AC008040.5 2 OTTHUMG00000185281.2 +45448 chr3 ENSEMBL gene 170149845 170149951 107.0 + 0 ENSG00000199536.1 snRNA RNU6-315P 3 +45449 chr3 HAVANA gene 170086732 170181749 16919.0 - 0 ENSG00000173889.15 protein_coding PHC3 2 OTTHUMG00000158777.8 +45450 chr3 ENSEMBL gene 170244782 170244881 100.0 + 0 ENSG00000200118.1 misc_RNA RF00019 3 +45451 chr3 HAVANA gene 170222365 170305981 5841.0 + 0 ENSG00000163558.12 protein_coding PRKCI 2 OTTHUMG00000150214.4 ncRNA_host +45452 chr3 HAVANA gene 170345678 170353961 469.0 + 0 ENSG00000239628.1 lincRNA AC073288.1 2 OTTHUMG00000158828.1 +45453 chr3 HAVANA gene 170357678 170396835 7782.0 + 0 ENSG00000136603.13 protein_coding SKIL 1 OTTHUMG00000158831.6 +45454 chr3 HAVANA gene 170410512 170418615 664.0 + 0 ENSG00000242578.1 lincRNA AC073288.2 2 OTTHUMG00000158939.1 +45455 chr3 ENSEMBL gene 170423103 170423162 60.0 + 0 ENSG00000283474.1 miRNA MIR6828 3 +45456 chr3 HAVANA gene 170418865 170454733 3732.0 + 0 ENSG00000013297.11 protein_coding CLDN11 1 OTTHUMG00000158940.4 ncRNA_host,overlapping_locus +45457 chr3 HAVANA gene 170495627 170496636 1010.0 + 0 ENSG00000241416.1 processed_pseudogene KRT8P13 1 OTTHUMG00000158860.1 pseudo_consens,overlapping_locus +45458 chr3 HAVANA gene 170459584 170586074 10459.0 - 0 ENSG00000013293.5 protein_coding SLC7A14 1 OTTHUMG00000158941.2 +45459 chr3 HAVANA gene 170653846 170654259 414.0 - 0 ENSG00000213174.3 processed_pseudogene AC026316.1 1 OTTHUMG00000157285.1 pseudo_consens +45460 chr3 HAVANA gene 170656562 170662123 3097.0 + 0 ENSG00000244738.1 sense_intronic AC026316.3 2 OTTHUMG00000158859.1 overlapping_locus +45461 chr3 HAVANA gene 170740351 170741365 263.0 - 0 ENSG00000239739.1 lincRNA AC026316.2 2 OTTHUMG00000158937.1 +45462 chr3 HAVANA gene 170418868 170860380 1545.0 + 0 ENSG00000285218.1 protein_coding AC026316.5 2 OTTHUMG00000192431.1 ncRNA_host,overlapping_locus +45463 chr3 HAVANA gene 170448639 170860993 4226.0 + 0 ENSG00000285051.1 processed_transcript AC026316.4 2 OTTHUMG00000192432.1 +45464 chr3 HAVANA gene 170864875 170870483 2326.0 - 0 ENSG00000163584.17 protein_coding RPL22L1 2 OTTHUMG00000158957.2 +45465 chr3 HAVANA gene 170888415 170908693 5593.0 - 0 ENSG00000163577.7 protein_coding EIF5A2 1 OTTHUMG00000158958.8 +45466 chr3 HAVANA gene 170952850 170953897 1048.0 - 0 ENSG00000240704.1 processed_pseudogene KLF7P1 2 OTTHUMG00000158998.1 +45467 chr3 ENSEMBL gene 170994870 170995033 164.0 - 0 ENSG00000199488.1 snRNA RNU1-70P 3 +45468 chr3 HAVANA gene 170996348 171026750 3417.0 - 0 ENSG00000163581.13 protein_coding SLC2A2 2 OTTHUMG00000158997.2 +45469 chr3 ENSEMBL gene 171106664 171106759 96.0 - 0 ENSG00000207963.1 miRNA MIR569 3 +45470 chr3 ENSEMBL gene 171439526 171439627 102.0 + 0 ENSG00000222506.1 misc_RNA RF00019 3 +45471 chr3 HAVANA gene 171061339 171460408 8523.0 - 0 ENSG00000154310.16 protein_coding TNIK 1 OTTHUMG00000159036.3 ncRNA_host +45472 chr3 HAVANA gene 171460612 171462256 1645.0 + 0 ENSG00000279673.1 TEC AC092919.2 2 OTTHUMG00000175845.1 +45473 chr3 HAVANA gene 171468084 171469633 229.0 + 0 ENSG00000240497.2 lincRNA AC092919.1 2 OTTHUMG00000159050.3 +45474 chr3 ENSEMBL gene 171504245 171504351 107.0 - 0 ENSG00000207114.1 snRNA RNU6-348P 3 +45475 chr3 HAVANA gene 171534423 171534615 193.0 + 0 ENSG00000234594.1 processed_pseudogene AC008134.1 2 OTTHUMG00000156959.1 +45476 chr3 HAVANA gene 171600405 171810950 12859.0 - 0 ENSG00000075651.15 protein_coding PLD1 1 OTTHUMG00000156947.7 +45477 chr3 HAVANA gene 171894436 171895240 470.0 + 0 ENSG00000235943.1 sense_intronic TMEM212-IT1 1 OTTHUMG00000156878.1 overlapping_locus +45478 chr3 HAVANA gene 171876352 171900740 427.0 - 0 ENSG00000234717.1 lincRNA TMEM212-AS1 2 OTTHUMG00000156879.1 +45479 chr3 HAVANA gene 171843349 171938715 2719.0 + 0 ENSG00000186329.9 protein_coding TMEM212 2 OTTHUMG00000156839.3 overlapping_locus +45480 chr3 HAVANA gene 172225428 172225872 445.0 - 0 ENSG00000237483.1 processed_pseudogene RPS27AP8 1 OTTHUMG00000156948.2 pseudo_consens +45481 chr3 ENSEMBL gene 172237326 172237591 266.0 + 0 ENSG00000243398.3 misc_RNA RN7SL141P 3 +45482 chr3 HAVANA gene 172301654 172303052 1399.0 - 0 ENSG00000279862.1 TEC AC092964.1 2 OTTHUMG00000187180.1 +45483 chr3 HAVANA gene 172039628 172401665 13270.0 + 0 ENSG00000075420.12 protein_coding FNDC3B 2 OTTHUMG00000156761.5 ncRNA_host +45484 chr3 HAVANA gene 172425850 172427089 1240.0 - 0 ENSG00000236686.1 processed_pseudogene BZW1P1 1 OTTHUMG00000156945.1 pseudo_consens +45485 chr3 HAVANA gene 172445133 172448456 1246.0 - 0 ENSG00000121853.3 protein_coding GHSR 2 OTTHUMG00000156946.3 +45486 chr3 HAVANA gene 172522228 172522444 217.0 + 0 ENSG00000224611.1 processed_pseudogene AC007919.1 1 OTTHUMG00000156760.1 pseudo_consens +45487 chr3 HAVANA gene 172505508 172523507 3473.0 - 0 ENSG00000121858.10 protein_coding TNFSF10 1 OTTHUMG00000156917.2 +45488 chr3 HAVANA gene 172560888 172595607 3667.0 - 0 ENSG00000223387.6 lincRNA LINC02068 2 OTTHUMG00000156985.3 +45489 chr3 HAVANA gene 172603440 172604006 567.0 - 0 ENSG00000224426.1 processed_pseudogene SLC31A1P1 1 OTTHUMG00000156918.1 pseudo_consens +45490 chr3 HAVANA gene 172680714 172681224 511.0 + 0 ENSG00000231384.1 processed_pseudogene AC007919.2 2 OTTHUMG00000156763.2 +45491 chr3 ENSEMBL gene 172703124 172703225 102.0 + 0 ENSG00000252082.1 snRNA RNU6-547P 3 +45492 chr3 HAVANA gene 172630249 172711218 4808.0 - 0 ENSG00000144959.9 protein_coding NCEH1 1 OTTHUMG00000156872.6 +45493 chr3 ENSEMBL gene 172771277 172771405 129.0 - 0 ENSG00000200355.1 snoRNA RF00139 3 +45494 chr3 ENSEMBL gene 172796429 172796558 130.0 - 0 ENSG00000201458.1 snRNA RNU4-4P 3 +45495 chr3 HAVANA gene 172750682 172821474 5499.0 + 0 ENSG00000114346.13 protein_coding ECT2 1 OTTHUMG00000156762.6 +45496 chr3 HAVANA gene 172828736 172829176 441.0 - 0 ENSG00000227440.1 processed_pseudogene ATP5MC1P4 1 OTTHUMG00000156866.1 pseudo_consens +45497 chr3 HAVANA gene 172830981 172831229 249.0 - 0 ENSG00000237501.1 processed_pseudogene AC108667.1 2 OTTHUMG00000156867.1 +45498 chr3 HAVANA gene 172889358 173141268 2106.0 - 0 ENSG00000144962.6 protein_coding SPATA16 2 OTTHUMG00000156865.1 +45499 chr3 HAVANA gene 173153737 173336965 470.0 + 0 ENSG00000237473.1 lincRNA AC068759.1 2 OTTHUMG00000157006.2 +45500 chr3 HAVANA gene 173644231 173644711 481.0 + 0 ENSG00000237645.1 processed_pseudogene AC092967.1 2 OTTHUMG00000157015.1 overlapping_locus +45501 chr3 HAVANA gene 173910498 173920796 815.0 - 0 ENSG00000228213.5 antisense NLGN1-AS1 1 OTTHUMG00000157016.1 +45502 chr3 ENSEMBL gene 174057641 174057864 224.0 + 0 ENSG00000252982.1 misc_RNA RN7SKP234 3 +45503 chr3 HAVANA gene 173396284 174286644 10148.0 + 0 ENSG00000169760.17 protein_coding NLGN1 1 OTTHUMG00000157005.6 ncRNA_host,overlapping_locus +45504 chr3 HAVANA gene 174302944 174303287 344.0 - 0 ENSG00000232601.1 processed_pseudogene AC069218.2 2 OTTHUMG00000157052.1 +45505 chr3 HAVANA gene 174377244 174378005 762.0 + 0 ENSG00000213169.3 processed_pseudogene AC069218.1 1 OTTHUMG00000157053.2 pseudo_consens +45506 chr3 ENSEMBL gene 174631823 174632064 242.0 + 0 ENSG00000253020.2 misc_RNA RN7SKP40 3 +45507 chr3 HAVANA gene 175059361 175060031 671.0 - 0 ENSG00000230497.2 processed_pseudogene EEF1B2P8 1 OTTHUMG00000157119.1 pseudo_consens +45508 chr3 HAVANA gene 175079307 175115242 422.0 - 0 ENSG00000230292.5 processed_transcript NAALADL2-AS3 2 OTTHUMG00000157080.2 +45509 chr3 HAVANA gene 175234861 175271096 1038.0 - 0 ENSG00000226779.1 antisense NAALADL2-AS2 2 OTTHUMG00000157131.1 +45510 chr3 ENSEMBL gene 175369540 175369621 82.0 + 0 ENSG00000264974.1 miRNA MIR4789 3 +45511 chr3 ENSEMBL gene 175397247 175397348 102.0 - 0 ENSG00000199792.1 snRNA RNU6-1233P 3 +45512 chr3 ENSEMBL gene 175609479 175609613 135.0 + 0 ENSG00000201648.1 snRNA RNU4-91P 3 +45513 chr3 HAVANA gene 175675087 175676801 1715.0 - 0 ENSG00000236241.1 processed_pseudogene AC119744.1 1 OTTHUMG00000157117.2 pseudo_consens +45514 chr3 HAVANA gene 175718231 175718670 440.0 - 0 ENSG00000214192.3 processed_pseudogene UBE2V1P2 1 OTTHUMG00000157118.1 pseudo_consens +45515 chr3 ENSEMBL gene 175767558 175767661 104.0 + 0 ENSG00000201452.1 snRNA RNU6-1317P 3 +45516 chr3 HAVANA gene 175773145 175776333 804.0 - 0 ENSG00000225552.1 antisense NAALADL2-AS1 1 OTTHUMG00000157121.2 +45517 chr3 HAVANA gene 174438573 175810552 13592.0 + 0 ENSG00000177694.15 protein_coding NAALADL2 2 OTTHUMG00000157120.6 ncRNA_host +45518 chr3 HAVANA gene 175938929 175941037 2109.0 - 0 ENSG00000260217.1 lincRNA AC104640.1 2 OTTHUMG00000175847.2 +45519 chr3 HAVANA gene 175977497 175978570 1074.0 - 0 ENSG00000230362.1 processed_pseudogene ACTG1P23 1 OTTHUMG00000157141.1 pseudo_consens +45520 chr3 HAVANA gene 176068042 176068908 867.0 - 0 ENSG00000236357.1 processed_pseudogene EI24P1 1 OTTHUMG00000157142.4 pseudo_consens +45521 chr3 HAVANA gene 176069107 176069252 146.0 + 0 ENSG00000271413.1 processed_pseudogene AC104640.2 1 OTTHUMG00000184291.1 pseudo_consens +45522 chr3 HAVANA gene 176113702 176114537 836.0 - 0 ENSG00000238026.1 processed_pseudogene AC117434.1 1 OTTHUMG00000157230.1 pseudo_consens +45523 chr3 ENSEMBL gene 176515103 176515151 49.0 + 0 ENSG00000283333.1 miRNA MIR7977 3 +45524 chr3 HAVANA gene 176604143 176635532 1040.0 - 0 ENSG00000223715.1 lincRNA LINC01208 1 OTTHUMG00000157218.2 +45525 chr3 ENSEMBL gene 176763233 176763341 109.0 + 0 ENSG00000252302.1 rRNA_pseudogene RNA5SP147 3 +45526 chr3 HAVANA gene 176814155 176817001 2400.0 - 0 ENSG00000228308.1 lincRNA LINC01209 2 OTTHUMG00000157300.2 overlapping_locus +45527 chr3 HAVANA gene 176643941 176867838 678.0 - 0 ENSG00000232461.1 lincRNA AC092920.1 2 OTTHUMG00000157301.2 overlapping_locus +45528 chr3 HAVANA gene 177010719 177011067 349.0 - 0 ENSG00000231888.1 processed_pseudogene MTND5P15 2 OTTHUMG00000157221.1 +45529 chr3 HAVANA gene 177037405 177047923 855.0 + 0 ENSG00000231310.3 antisense TBL1XR1-AS1 2 OTTHUMG00000157220.4 +45530 chr3 ENSEMBL gene 177120691 177120800 110.0 - 0 ENSG00000201343.1 misc_RNA RF00019 3 +45531 chr3 ENSEMBL gene 177126017 177126120 104.0 - 0 ENSG00000200882.1 snRNA RNU6-681P 3 +45532 chr3 HAVANA gene 177019340 177228000 11603.0 - 0 ENSG00000177565.16 protein_coding TBL1XR1 2 OTTHUMG00000157140.27 ncRNA_host +45533 chr3 HAVANA gene 177297161 177298386 1226.0 - 0 ENSG00000236893.1 processed_pseudogene ASS1P7 1 OTTHUMG00000157232.1 pseudo_consens +45534 chr3 HAVANA gene 177294442 177323418 2046.0 + 0 ENSG00000203645.2 lincRNA LINC00501 2 OTTHUMG00000157234.1 +45535 chr3 HAVANA gene 177337628 177349166 522.0 - 0 ENSG00000226782.2 lincRNA AC117465.1 2 OTTHUMG00000157252.1 +45536 chr3 ENSEMBL gene 177503303 177503552 250.0 - 0 ENSG00000252028.1 misc_RNA RN7SKP52 3 +45537 chr3 ENSEMBL gene 177624282 177624409 128.0 - 0 ENSG00000200288.1 snoRNA RF00425 3 +45538 chr3 HAVANA gene 177621382 177628287 723.0 - 0 ENSG00000236385.1 lincRNA AC026355.2 2 OTTHUMG00000157233.1 ncRNA_host +45539 chr3 HAVANA gene 177683627 177691250 587.0 + 0 ENSG00000228561.2 lincRNA AC026355.1 2 OTTHUMG00000157235.3 overlapping_locus +45540 chr3 HAVANA gene 177700346 177701072 727.0 - 0 ENSG00000277241.1 processed_pseudogene AC026355.3 2 OTTHUMG00000187573.1 +45541 chr3 HAVANA gene 177441921 177752305 1234.0 + 0 ENSG00000228221.5 lincRNA LINC00578 2 OTTHUMG00000157222.3 overlapping_locus +45542 chr3 HAVANA gene 177816865 177899224 3005.0 + 0 ENSG00000231574.5 lincRNA LINC02015 2 OTTHUMG00000157236.1 +45543 chr3 HAVANA gene 177934823 177937662 560.0 + 0 ENSG00000225790.1 lincRNA AC007953.1 2 OTTHUMG00000157253.1 +45544 chr3 HAVANA gene 177954066 177959798 193.0 - 0 ENSG00000270321.1 lincRNA AC007953.2 2 OTTHUMG00000185191.1 +45545 chr3 ENSEMBL gene 178007672 178007779 108.0 - 0 ENSG00000199858.1 snRNA RNU6-1120P 3 +45546 chr3 HAVANA gene 178202050 178385417 2784.0 - 0 ENSG00000223930.5 lincRNA AC109779.1 1 OTTHUMG00000157254.3 +45547 chr3 ENSEMBL gene 178429197 178429290 94.0 - 0 ENSG00000252336.1 rRNA_pseudogene RNA5SP148 3 +45548 chr3 HAVANA gene 178419201 178457309 578.0 + 0 ENSG00000223941.5 sense_intronic LINC01014 1 OTTHUMG00000157288.1 overlapping_locus +45549 chr3 HAVANA gene 178493327 178493810 484.0 - 0 ENSG00000271131.1 processed_pseudogene PPIAP75 1 OTTHUMG00000184353.1 pseudo_consens +45550 chr3 HAVANA gene 178419123 178843300 1391.0 + 0 ENSG00000275163.1 protein_coding AC117457.1 2 OTTHUMG00000186539.1 overlapping_locus +45551 chr3 HAVANA gene 178272932 178844429 3542.0 + 0 ENSG00000197584.11 protein_coding KCNMB2 1 OTTHUMG00000157264.5 overlapping_locus +45552 chr3 HAVANA gene 178526505 178860405 1691.0 - 0 ENSG00000237978.5 antisense KCNMB2-AS1 2 OTTHUMG00000157289.1 +45553 chr3 HAVANA gene 179017223 179072279 9646.0 - 0 ENSG00000172667.10 protein_coding ZMAT3 2 OTTHUMG00000157290.5 +45554 chr3 ENSEMBL gene 179097731 179097840 110.0 + 0 ENSG00000200616.1 misc_RNA RF00019 3 +45555 chr3 HAVANA gene 179101366 179147973 351.0 - 0 ENSG00000229102.1 lincRNA AC076966.1 1 OTTHUMG00000157310.1 +45556 chr3 ENSEMBL gene 179169083 179169210 128.0 - 0 ENSG00000201957.1 snoRNA RF00402 3 +45557 chr3 HAVANA gene 179148114 179240093 9411.0 + 0 ENSG00000121879.4 protein_coding PIK3CA 1 OTTHUMG00000157311.4 +45558 chr3 HAVANA gene 179259028 179261273 2246.0 - 0 ENSG00000240429.1 processed_pseudogene LRRFIP1P1 1 OTTHUMG00000157336.1 pseudo_consens,overlapping_locus +45559 chr3 HAVANA gene 179236691 179267002 8979.0 - 0 ENSG00000171121.16 protein_coding KCNMB3 2 OTTHUMG00000157337.4 overlapping_locus +45560 chr3 HAVANA gene 179322991 179338583 6859.0 + 0 ENSG00000121864.9 protein_coding ZNF639 2 OTTHUMG00000157439.5 +45561 chr3 HAVANA gene 179340322 179341887 1566.0 + 0 ENSG00000260743.1 lincRNA AC007823.1 2 OTTHUMG00000175849.1 +45562 chr3 HAVANA gene 179347692 179394931 5957.0 + 0 ENSG00000171109.18 protein_coding MFN1 1 OTTHUMG00000157385.6 +45563 chr3 HAVANA gene 179396961 179399191 1941.0 + 0 ENSG00000242539.2 antisense AC007620.2 2 OTTHUMG00000133759.4 +45564 chr3 HAVANA gene 179405448 179405944 497.0 + 0 ENSG00000272699.1 antisense AC007620.3 2 OTTHUMG00000186088.1 +45565 chr3 HAVANA gene 179396089 179451590 7035.0 - 0 ENSG00000114450.9 protein_coding GNB4 1 OTTHUMG00000157440.3 +45566 chr3 HAVANA gene 179452395 179452419 25.0 - 0 ENSG00000239255.1 processed_pseudogene AC007620.1 2 OTTHUMG00000157482.1 +45567 chr3 HAVANA gene 179464346 179465328 983.0 + 0 ENSG00000181260.8 processed_pseudogene MTHFD2P7 1 OTTHUMG00000157481.1 pseudo_consens +45568 chr3 HAVANA gene 179583262 179583762 501.0 - 0 ENSG00000272910.1 antisense AC090425.2 2 OTTHUMG00000186089.1 +45569 chr3 HAVANA gene 179584271 179584410 140.0 - 0 ENSG00000272660.1 antisense AC090425.1 2 OTTHUMG00000186090.1 +45570 chr3 HAVANA gene 179562880 179588408 3675.0 + 0 ENSG00000136518.16 protein_coding ACTL6A 2 OTTHUMG00000157782.8 +45571 chr3 HAVANA gene 179588285 179604654 1370.0 - 0 ENSG00000136522.13 protein_coding MRPL47 2 OTTHUMG00000157784.1 +45572 chr3 ENSEMBL gene 179614775 179614878 104.0 - 0 ENSG00000239096.1 snoRNA RF01210 3 +45573 chr3 HAVANA gene 179604690 179627647 5871.0 + 0 ENSG00000136521.12 protein_coding NDUFB5 2 OTTHUMG00000157480.3 +45574 chr3 HAVANA gene 179649494 179650200 707.0 - 0 ENSG00000243977.1 processed_pseudogene AC125604.1 1 OTTHUMG00000157785.1 pseudo_consens +45575 chr3 HAVANA gene 179652755 179789401 8440.0 + 0 ENSG00000058056.8 protein_coding USP13 2 OTTHUMG00000157783.6 +45576 chr3 HAVANA gene 179804063 179804366 304.0 + 0 ENSG00000270178.1 lincRNA AC007687.1 2 OTTHUMG00000183920.1 +45577 chr3 HAVANA gene 179875376 179881609 827.0 + 0 ENSG00000243799.1 antisense PEX5L-AS1 1 OTTHUMG00000157362.1 +45578 chr3 HAVANA gene 179898229 179921895 630.0 + 0 ENSG00000244302.1 antisense PEX5L-AS2 1 OTTHUMG00000157364.1 +45579 chr3 HAVANA gene 179794958 180037053 10236.0 - 0 ENSG00000114757.18 protein_coding PEX5L 2 OTTHUMG00000157363.6 +45580 chr3 ENSEMBL gene 180161886 180161977 92.0 - 0 ENSG00000201822.1 rRNA_pseudogene RNA5SP149 3 +45581 chr3 HAVANA gene 180201159 180201212 54.0 + 0 ENSG00000282327.1 processed_pseudogene AC134503.1 2 OTTHUMG00000191450.1 +45582 chr3 HAVANA gene 180212191 180213108 918.0 + 0 ENSG00000213158.6 processed_pseudogene GAPDHP36 1 OTTHUMG00000157862.2 pseudo_consens +45583 chr3 HAVANA gene 180323107 180325059 1953.0 + 0 ENSG00000239880.1 processed_pseudogene AC068760.1 1 OTTHUMG00000157856.1 pseudo_consens +45584 chr3 HAVANA gene 180414174 180422506 940.0 + 0 ENSG00000241696.1 lincRNA LINC02053 1 OTTHUMG00000157863.1 +45585 chr3 ENSEMBL gene 180542701 180542836 136.0 + 0 ENSG00000201810.1 snoRNA RF00096 3 +45586 chr3 ENSEMBL gene 180581057 180581163 107.0 + 0 ENSG00000199986.1 snRNA RNU6-486P 3 +45587 chr3 HAVANA gene 180589887 180590047 161.0 - 0 ENSG00000241946.1 processed_pseudogene AC068298.1 2 OTTHUMG00000157858.1 overlapping_locus +45588 chr3 HAVANA gene 180566718 180601935 563.0 - 0 ENSG00000239774.1 lincRNA AC125618.1 1 OTTHUMG00000157861.2 overlapping_locus +45589 chr3 HAVANA gene 180602130 180617828 7783.0 + 0 ENSG00000163728.10 protein_coding TTC14 1 OTTHUMG00000157859.12 +45590 chr3 HAVANA gene 180602858 180679500 3762.0 - 0 ENSG00000284862.1 protein_coding CCDC39 2 OTTHUMG00000157857.5 overlapping_locus +45591 chr3 HAVANA gene 180680084 180700449 283.0 + 0 ENSG00000243187.1 antisense CCDC39-AS1 1 OTTHUMG00000157929.1 +45592 chr3 ENSEMBL gene 180736405 180736703 299.0 - 0 ENSG00000242811.3 misc_RNA RN7SL229P 3 +45593 chr3 HAVANA gene 180772750 180773914 1165.0 - 0 ENSG00000242068.1 processed_pseudogene AC108734.3 1 OTTHUMG00000157931.1 pseudo_consens,overlapping_locus +45594 chr3 HAVANA gene 180820544 180821612 1069.0 + 0 ENSG00000241473.1 processed_pseudogene AC108734.2 1 OTTHUMG00000157930.1 pseudo_consens +45595 chr3 HAVANA gene 180827977 180829850 1874.0 - 0 ENSG00000239516.1 processed_pseudogene FLYWCH1P1 1 OTTHUMG00000157928.1 pseudo_consens,overlapping_locus +45596 chr3 HAVANA gene 180614008 180870933 4978.0 - 0 ENSG00000145075.12 protein_coding CCDC39 2 OTTHUMG00000192436.1 ncRNA_host,overlapping_locus +45597 chr3 HAVANA gene 180707589 180871005 3101.0 - 0 ENSG00000285336.1 lincRNA AC108734.4 2 OTTHUMG00000192437.1 ncRNA_host,overlapping_locus +45598 chr3 HAVANA gene 180887677 180888075 399.0 - 0 ENSG00000213157.3 processed_pseudogene AC108734.1 1 OTTHUMG00000157282.2 pseudo_consens +45599 chr3 HAVANA gene 180868141 180982753 12054.0 + 0 ENSG00000114416.17 protein_coding FXR1 2 OTTHUMG00000158138.6 +45600 chr3 HAVANA gene 180983709 180989774 3586.0 - 0 ENSG00000205981.7 protein_coding DNAJC19 2 OTTHUMG00000158180.2 +45601 chr3 HAVANA gene 181146233 181146463 231.0 + 0 ENSG00000242140.1 processed_pseudogene AC083904.1 1 OTTHUMG00000158187.1 pseudo_consens,overlapping_locus +45602 chr3 ENSEMBL gene 181231737 181231843 107.0 + 0 ENSG00000206932.1 snRNA RNU6-4P 3 +45603 chr3 HAVANA gene 181242345 181242901 401.0 - 0 ENSG00000237806.1 processed_pseudogene FAUP2 1 OTTHUMG00000157271.1 pseudo_consens +45604 chr3 HAVANA gene 181421058 181442486 865.0 - 0 ENSG00000241231.1 lincRNA AC022294.1 2 OTTHUMG00000158223.1 +45605 chr3 HAVANA gene 181505075 181505879 805.0 - 0 ENSG00000235294.1 processed_pseudogene RPL7AP25 1 OTTHUMG00000157270.1 pseudo_consens +45606 chr3 ENSEMBL gene 181610498 181610729 232.0 + 0 ENSG00000276074.1 misc_RNA RF01951 3 +45607 chr3 ENSEMBL gene 181699608 181699883 276.0 + 0 ENSG00000276690.1 misc_RNA RF01953 3 +45608 chr3 HAVANA gene 181534177 181700611 1651.0 - 0 ENSG00000239381.6 lincRNA AC125613.1 2 OTTHUMG00000158224.2 +45609 chr3 HAVANA gene 181711924 181714436 2513.0 + 0 ENSG00000181449.3 protein_coding SOX2 2 OTTHUMG00000158222.1 overlapping_locus,retrogene +45610 chr3 ENSEMBL gene 181715185 181715293 109.0 + 0 ENSG00000278026.1 misc_RNA RF01954 3 +45611 chr3 ENSEMBL gene 181813401 181813702 302.0 + 0 ENSG00000266317.2 misc_RNA RN7SL703P 3 +45612 chr3 ENSEMBL gene 181822872 181822990 119.0 - 0 ENSG00000285546.1 rRNA_pseudogene AC007547.3 3 +45613 chr3 ENSEMBL gene 181822872 181822990 119.0 - 0 ENSG00000199839.1 rRNA RNA5SP150 3 +45614 chr3 HAVANA gene 180989762 181836880 31629.0 + 0 ENSG00000242808.8 sense_overlapping SOX2-OT 2 OTTHUMG00000158186.9 ncRNA_host,overlapping_locus +45615 chr3 HAVANA gene 181847526 181847885 360.0 - 0 ENSG00000239805.1 processed_pseudogene AC007547.2 1 OTTHUMG00000158237.1 pseudo_consens +45616 chr3 HAVANA gene 181866351 181867154 490.0 - 0 ENSG00000213155.4 processed_pseudogene AC007547.1 1 OTTHUMG00000158240.1 pseudo_consens +45617 chr3 ENSEMBL gene 181968459 181968681 223.0 + 0 ENSG00000252257.1 misc_RNA RN7SKP265 3 +45618 chr3 HAVANA gene 181952343 182010678 14145.0 + 0 ENSG00000242512.8 lincRNA LINC01206 2 OTTHUMG00000158238.6 ncRNA_host +45619 chr3 HAVANA gene 182121884 182142137 477.0 + 0 ENSG00000240478.1 lincRNA AC012081.1 1 OTTHUMG00000158236.1 +45620 chr3 HAVANA gene 182365147 182368256 328.0 + 0 ENSG00000242012.1 lincRNA AC084211.1 1 OTTHUMG00000158300.1 +45621 chr3 HAVANA gene 182460417 182461072 656.0 - 0 ENSG00000244199.1 processed_pseudogene EIF4EP3 1 OTTHUMG00000158292.1 pseudo_consens,overlapping_locus +45622 chr3 HAVANA gene 182446970 182486364 1808.0 - 0 ENSG00000241098.1 lincRNA LINC01994 2 OTTHUMG00000158294.1 overlapping_locus +45623 chr3 HAVANA gene 182498264 182507124 621.0 - 0 ENSG00000244247.1 lincRNA LINC01995 2 OTTHUMG00000158301.1 +45624 chr3 HAVANA gene 182610674 182611414 741.0 + 0 ENSG00000228766.3 processed_pseudogene RPL7L1P8 1 OTTHUMG00000158298.1 pseudo_consens +45625 chr3 HAVANA gene 182644214 182655880 592.0 + 0 ENSG00000238837.3 lincRNA LINC02031 2 OTTHUMG00000158297.2 +45626 chr3 HAVANA gene 182691928 182692285 358.0 + 0 ENSG00000243378.1 processed_pseudogene AC083801.1 1 OTTHUMG00000158293.1 pseudo_consens +45627 chr3 HAVANA gene 182739669 182740848 1180.0 - 0 ENSG00000260377.1 lincRNA AC083801.2 2 OTTHUMG00000175856.1 +45628 chr3 HAVANA gene 182783236 182793394 1877.0 - 0 ENSG00000240063.1 antisense AC069431.1 2 OTTHUMG00000158299.1 +45629 chr3 HAVANA gene 182843521 182844619 1099.0 - 0 ENSG00000270554.1 processed_pseudogene AC069431.2 1 OTTHUMG00000184352.1 pseudo_consens +45630 chr3 HAVANA gene 182793500 182921635 9196.0 + 0 ENSG00000058063.15 protein_coding ATP11B 1 OTTHUMG00000158295.3 +45631 chr3 HAVANA gene 182921240 182921938 699.0 - 0 ENSG00000273261.1 antisense AC092953.2 2 OTTHUMG00000186091.1 +45632 chr3 HAVANA gene 182950783 182956307 543.0 - 0 ENSG00000244346.1 processed_pseudogene AC092953.1 1 OTTHUMG00000158319.1 pseudo_consens,overlapping_locus +45633 chr3 HAVANA gene 182938074 182985953 8412.0 - 0 ENSG00000043093.13 protein_coding DCUN1D1 1 OTTHUMG00000158314.4 overlapping_locus +45634 chr3 HAVANA gene 183016255 183017808 765.0 + 0 ENSG00000243368.2 antisense MCCC1-AS1 2 OTTHUMG00000158356.2 +45635 chr3 HAVANA gene 183015218 183116075 4321.0 - 0 ENSG00000078070.12 protein_coding MCCC1 2 OTTHUMG00000158355.3 +45636 chr3 HAVANA gene 183122213 183163839 3816.0 - 0 ENSG00000078081.7 protein_coding LAMP3 1 OTTHUMG00000158387.3 +45637 chr3 ENSEMBL gene 183258300 183258416 117.0 - 0 ENSG00000202502.1 rRNA_pseudogene RNA5SP151 3 +45638 chr3 HAVANA gene 183253244 183298504 8140.0 + 0 ENSG00000176597.11 protein_coding B3GNT5 1 OTTHUMG00000158436.2 +45639 chr3 HAVANA gene 183178043 183428778 20568.0 - 0 ENSG00000053524.12 protein_coding MCF2L2 2 OTTHUMG00000158388.3 +45640 chr3 ENSEMBL gene 183451857 183451988 132.0 + 0 ENSG00000201229.1 snoRNA SNORA63D 3 +45641 chr3 ENSEMBL gene 183452567 183452764 198.0 + 0 ENSG00000253092.1 snoRNA RF01241 3 +45642 chr3 ENSEMBL gene 183453814 183453944 131.0 + 0 ENSG00000199363.1 snoRNA RF00092 3 +45643 chr3 ENSEMBL gene 183454128 183454262 135.0 + 0 ENSG00000251730.1 snoRNA RF00394 3 +45644 chr3 HAVANA gene 183447608 183456013 2131.0 + 0 ENSG00000240024.5 transcribed_unprocessed_pseudogene LINC00888 2 OTTHUMG00000158437.1 +45645 chr3 HAVANA gene 183462851 183463201 351.0 - 0 ENSG00000271682.1 processed_pseudogene AC092960.1 1 OTTHUMG00000184349.1 pseudo_consens +45646 chr3 HAVANA gene 183548735 183552326 503.0 + 0 ENSG00000242522.1 antisense KLHL6-AS1 1 OTTHUMG00000158438.1 +45647 chr3 HAVANA gene 183487531 183555689 10546.0 - 0 ENSG00000172578.11 protein_coding KLHL6 2 OTTHUMG00000148673.2 +45648 chr3 HAVANA gene 183613620 183616742 2426.0 + 0 ENSG00000243584.1 processed_pseudogene AC068769.1 1 OTTHUMG00000158085.1 pseudo_consens +45649 chr3 HAVANA gene 183635568 183684477 8650.0 + 0 ENSG00000114796.15 protein_coding KLHL24 2 OTTHUMG00000156911.5 +45650 chr3 HAVANA gene 183806457 183810783 3271.0 - 0 ENSG00000233885.7 antisense YEATS2-AS1 2 OTTHUMG00000156899.4 +45651 chr3 HAVANA gene 183697818 183812625 10212.0 + 0 ENSG00000163872.15 protein_coding YEATS2 1 OTTHUMG00000156898.2 +45652 chr3 HAVANA gene 183815876 183825594 2408.0 - 0 ENSG00000180834.7 protein_coding MAP6D1 1 OTTHUMG00000156900.1 overlapping_locus +45653 chr3 HAVANA gene 183815568 183884889 3058.0 - 0 ENSG00000283765.1 protein_coding AC131160.1 2 OTTHUMG00000156890.8 overlapping_locus +45654 chr3 HAVANA gene 183829271 183884933 2268.0 - 0 ENSG00000175193.13 protein_coding PARL 1 OTTHUMG00000191959.6 overlapping_locus +45655 chr3 ENSEMBL gene 183886800 183886885 86.0 + 0 ENSG00000263932.1 miRNA MIR4448 3 +45656 chr3 HAVANA gene 183884924 183888449 1179.0 + 0 ENSG00000234371.6 transcribed_processed_pseudogene RPSAP31 1 OTTHUMG00000156888.1 pseudo_consens +45657 chr3 HAVANA gene 183895900 183910936 1831.0 - 0 ENSG00000233441.6 transcribed_unitary_pseudogene CYP2AB1P 2 OTTHUMG00000156889.2 +45658 chr3 HAVANA gene 184006338 184011419 469.0 + 0 ENSG00000223882.1 antisense ABCC5-AS1 1 OTTHUMG00000156870.1 +45659 chr3 HAVANA gene 183919934 184018015 11441.0 - 0 ENSG00000114770.16 protein_coding ABCC5 1 OTTHUMG00000156871.2 +45660 chr3 HAVANA gene 184026369 184027756 1388.0 - 0 ENSG00000223529.1 processed_pseudogene EEF1A1P8 1 OTTHUMG00000156863.1 pseudo_consens +45661 chr3 HAVANA gene 184031544 184039369 2068.0 + 0 ENSG00000186090.10 protein_coding HTR3D 2 OTTHUMG00000156858.3 +45662 chr3 HAVANA gene 184053047 184060671 1697.0 + 0 ENSG00000178084.1 protein_coding HTR3C 2 OTTHUMG00000156862.1 +45663 chr3 HAVANA gene 184076779 184084219 1057.0 + 0 ENSG00000233576.1 unprocessed_pseudogene AC131235.2 2 OTTHUMG00000156860.1 +45664 chr3 ENSEMBL gene 184086791 184086903 113.0 - 0 ENSG00000207351.1 misc_RNA RF00019 3 +45665 chr3 HAVANA gene 184095118 184105178 515.0 - 0 ENSG00000238020.1 antisense HTR3E-AS1 2 OTTHUMG00000156861.1 +45666 chr3 HAVANA gene 184097064 184106995 2523.0 + 0 ENSG00000186038.9 protein_coding HTR3E 1 OTTHUMG00000156857.2 +45667 chr3 HAVANA gene 184115352 184117898 2192.0 + 0 ENSG00000205955.4 transcribed_processed_pseudogene HSP90AA5P 1 OTTHUMG00000156859.1 pseudo_consens +45668 chr3 HAVANA gene 184132942 184133561 620.0 - 0 ENSG00000273181.1 lincRNA AC131235.4 2 OTTHUMG00000186108.1 +45669 chr3 HAVANA gene 184134019 184135238 386.0 - 0 ENSG00000272721.5 antisense AC131235.3 2 OTTHUMG00000186109.1 +45670 chr3 HAVANA gene 184135038 184146112 7188.0 + 0 ENSG00000145191.13 protein_coding EIF2B5 1 OTTHUMG00000156840.20 +45671 chr3 HAVANA gene 184149704 184150435 732.0 + 0 ENSG00000228205.1 processed_pseudogene AC131235.1 1 OTTHUMG00000156842.1 pseudo_consens,overlapping_locus +45672 chr3 HAVANA gene 184155311 184173614 6368.0 + 0 ENSG00000161202.18 protein_coding DVL3 2 OTTHUMG00000156841.10 +45673 chr3 HAVANA gene 184174689 184184091 4756.0 + 0 ENSG00000161203.13 protein_coding AP2M1 2 OTTHUMG00000156822.19 +45674 chr3 HAVANA gene 184186023 184194012 5207.0 + 0 ENSG00000161204.11 protein_coding ABCF3 2 OTTHUMG00000156824.1 +45675 chr3 ENSEMBL gene 184241405 184241489 85.0 + 0 ENSG00000221120.1 miRNA MIR1224 3 +45676 chr3 HAVANA gene 184230429 184242329 5730.0 + 0 ENSG00000145198.14 protein_coding VWA5B2 2 OTTHUMG00000156820.2 ncRNA_host +45677 chr3 HAVANA gene 184242301 184249548 3464.0 - 0 ENSG00000214160.9 protein_coding ALG3 1 OTTHUMG00000156823.3 +45678 chr3 HAVANA gene 184249650 184259585 1823.0 + 0 ENSG00000284753.1 protein_coding EEF1AKMT4 2 OTTHUMG00000192542.1 overlapping_locus +45679 chr3 HAVANA gene 184259213 184261463 1362.0 - 0 ENSG00000163888.3 protein_coding CAMK2N2 2 OTTHUMG00000156821.1 +45680 chr3 HAVANA gene 184276011 184293031 4729.0 + 0 ENSG00000145194.18 protein_coding ECE2 2 OTTHUMG00000150551.4 overlapping_locus +45681 chr3 HAVANA gene 184249695 184293031 3445.0 + 0 ENSG00000284917.1 protein_coding EEF1AKMT4-ECE2 2 OTTHUMG00000192543.1 overlapping_locus +45682 chr3 HAVANA gene 184298709 184309054 5453.0 + 0 ENSG00000175166.16 protein_coding PSMD2 1 OTTHUMG00000156796.4 +45683 chr3 ENSEMBL gene 184325696 184325771 76.0 + 0 ENSG00000212158.1 snoRNA SNORD66 3 +45684 chr3 HAVANA gene 184314495 184335358 8257.0 + 0 ENSG00000114867.20 protein_coding EIF4G1 1 OTTHUMG00000156784.21 ncRNA_host +45685 chr3 HAVANA gene 184335926 184348421 8925.0 + 0 ENSG00000175182.14 protein_coding FAM131A 1 OTTHUMG00000156206.20 +45686 chr3 HAVANA gene 184346185 184361651 8523.0 - 0 ENSG00000114859.15 protein_coding CLCN2 1 OTTHUMG00000156747.4 +45687 chr3 HAVANA gene 184361718 184368596 3146.0 + 0 ENSG00000163882.9 protein_coding POLR2H 1 OTTHUMG00000156746.2 +45688 chr3 HAVANA gene 184371935 184381968 2705.0 - 0 ENSG00000090534.19 protein_coding THPO 2 OTTHUMG00000156745.5 +45689 chr3 HAVANA gene 184380073 184390736 6620.0 + 0 ENSG00000090539.15 protein_coding CHRD 1 OTTHUMG00000141267.2 +45690 chr3 HAVANA gene 184399790 184457891 4058.0 + 0 ENSG00000224153.3 lincRNA LINC02054 1 OTTHUMG00000156732.3 +45691 chr3 HAVANA gene 184499484 184500370 887.0 - 0 ENSG00000283625.1 unprocessed_pseudogene AC128714.1 2 OTTHUMG00000191713.1 +45692 chr3 HAVANA gene 184505113 184508399 727.0 + 0 ENSG00000227509.1 lincRNA LINC01839 1 OTTHUMG00000156714.1 +45693 chr3 HAVANA gene 184546714 184556918 571.0 - 0 ENSG00000230215.1 antisense LINC01840 2 OTTHUMG00000156713.1 +45694 chr3 HAVANA gene 184561784 184582409 4532.0 + 0 ENSG00000182580.2 protein_coding EPHB3 2 OTTHUMG00000156710.1 +45695 chr3 HAVANA gene 184710367 184712002 1636.0 - 0 ENSG00000177383.4 protein_coding MAGEF1 2 OTTHUMG00000156712.1 retrogene +45696 chr3 HAVANA gene 184734075 184738949 701.0 + 0 ENSG00000272970.1 lincRNA AC107294.2 2 OTTHUMG00000186127.1 +45697 chr3 HAVANA gene 184741937 184742462 526.0 + 0 ENSG00000273403.1 lincRNA AC107294.3 2 OTTHUMG00000186128.1 +45698 chr3 HAVANA gene 184742818 184743284 467.0 + 0 ENSG00000272922.1 lincRNA AC107294.1 2 OTTHUMG00000186129.1 +45699 chr3 HAVANA gene 184756389 184773155 2591.0 - 0 ENSG00000229433.1 lincRNA LINC02069 1 OTTHUMG00000156711.1 +45700 chr3 HAVANA gene 184812143 185052614 10366.0 + 0 ENSG00000156931.15 protein_coding VPS8 1 OTTHUMG00000156707.10 +45701 chr3 HAVANA gene 185078050 185153014 5901.0 - 0 ENSG00000187068.2 protein_coding C3orf70 2 OTTHUMG00000156696.1 +45702 chr3 HAVANA gene 185162871 185191955 1632.0 + 0 ENSG00000223358.5 antisense EHHADH-AS1 2 OTTHUMG00000156697.1 +45703 chr3 HAVANA gene 185245460 185246441 982.0 - 0 ENSG00000229704.1 processed_pseudogene EIF2S2P2 1 OTTHUMG00000156699.1 pseudo_consens,overlapping_locus +45704 chr3 ENSEMBL gene 185253210 185253272 63.0 - 0 ENSG00000264614.1 miRNA MIR5588 3 +45705 chr3 HAVANA gene 185190624 185281990 4700.0 - 0 ENSG00000113790.10 protein_coding EHHADH 1 OTTHUMG00000156698.1 ncRNA_host,overlapping_locus +45706 chr3 HAVANA gene 185417495 185418778 1284.0 - 0 ENSG00000229638.1 processed_pseudogene RPL4P4 1 OTTHUMG00000156700.1 pseudo_consens +45707 chr3 HAVANA gene 185282941 185489097 12623.0 + 0 ENSG00000073803.13 protein_coding MAP3K13 1 OTTHUMG00000156673.7 +45708 chr3 HAVANA gene 185476496 185499057 8668.0 - 0 ENSG00000163900.10 protein_coding TMEM41A 1 OTTHUMG00000156660.1 +45709 chr3 HAVANA gene 185506262 185552613 4122.0 - 0 ENSG00000163898.9 protein_coding LIPH 1 OTTHUMG00000156657.2 +45710 chr3 HAVANA gene 185606575 185606873 299.0 + 0 ENSG00000236489.1 processed_pseudogene AC133473.1 1 OTTHUMG00000156659.2 pseudo_consens,overlapping_locus +45711 chr3 HAVANA gene 185582496 185633551 7169.0 + 0 ENSG00000163904.12 protein_coding SENP2 1 OTTHUMG00000156658.2 overlapping_locus +45712 chr3 HAVANA gene 185712528 185729787 3415.0 + 0 ENSG00000163915.7 antisense IGF2BP2-AS1 1 OTTHUMG00000156643.1 +45713 chr3 ENSEMBL gene 185767847 185767904 58.0 - 0 ENSG00000265470.1 miRNA MIR548AQ 3 +45714 chr3 HAVANA gene 185643739 185825056 4735.0 - 0 ENSG00000073792.15 protein_coding IGF2BP2 2 OTTHUMG00000074025.3 ncRNA_host +45715 chr3 HAVANA gene 185915906 185938136 11769.0 - 0 ENSG00000136527.17 protein_coding TRA2B 2 OTTHUMG00000156641.2 +45716 chr3 HAVANA gene 185959943 185980872 2628.0 + 0 ENSG00000171658.8 transcribed_unprocessed_pseudogene NMRAL2P 1 OTTHUMG00000156640.2 +45717 chr3 ENSEMBL gene 186076306 186076591 286.0 - 0 ENSG00000277118.1 misc_RNA RF00017 3 +45718 chr3 HAVANA gene 186079170 186080947 560.0 + 0 ENSG00000234197.1 antisense ETV5-AS1 1 OTTHUMG00000156638.1 +45719 chr3 HAVANA gene 186046308 186110318 5802.0 - 0 ENSG00000244405.7 protein_coding ETV5 2 OTTHUMG00000156639.4 ncRNA_host,overlapping_locus +45720 chr3 HAVANA gene 186105668 186362237 10978.0 - 0 ENSG00000058866.14 protein_coding DGKG 2 OTTHUMG00000156617.5 overlapping_locus +45721 chr3 HAVANA gene 186440345 186450696 1165.0 + 0 ENSG00000234548.5 lincRNA LINC02020 1 OTTHUMG00000156616.2 +45722 chr3 HAVANA gene 186476727 186478370 690.0 + 0 ENSG00000226859.1 lincRNA LINC02051 1 OTTHUMG00000156619.1 +45723 chr3 HAVANA gene 186454982 186493661 2692.0 - 0 ENSG00000224406.5 lincRNA LINC02052 1 OTTHUMG00000156618.1 +45724 chr3 HAVANA gene 186538441 186546702 2151.0 - 0 ENSG00000213139.7 protein_coding CRYGS 2 OTTHUMG00000156615.1 overlapping_locus +45725 chr3 HAVANA gene 186546073 186570543 3405.0 - 0 ENSG00000113838.12 protein_coding TBCCD1 1 OTTHUMG00000156613.2 overlapping_locus +45726 chr3 HAVANA gene 186567403 186585800 5731.0 + 0 ENSG00000090520.11 protein_coding DNAJB11 2 OTTHUMG00000156614.2 overlapping_locus +45727 chr3 HAVANA gene 186581995 186597103 501.0 + 0 ENSG00000283149.1 protein_coding AC068631.2 2 OTTHUMG00000191653.1 overlapping_locus +45728 chr3 HAVANA gene 186596976 186597200 225.0 + 0 ENSG00000283390.1 processed_pseudogene AC068631.3 2 OTTHUMG00000191654.1 overlapping_locus +45729 chr3 HAVANA gene 186612923 186621318 2353.0 + 0 ENSG00000145192.12 protein_coding AHSG 1 OTTHUMG00000156605.1 +45730 chr3 ENSEMBL gene 186629936 186630211 276.0 - 0 ENSG00000275696.1 misc_RNA RF00017 3 +45731 chr3 HAVANA gene 186635969 186653141 2024.0 + 0 ENSG00000090512.11 protein_coding FETUB 1 OTTHUMG00000156586.2 +45732 chr3 HAVANA gene 186660216 186678240 5061.0 + 0 ENSG00000113905.4 protein_coding HRG 1 OTTHUMG00000156578.3 +45733 chr3 HAVANA gene 186687329 186692506 1344.0 + 0 ENSG00000225175.1 unprocessed_pseudogene AC109780.1 2 OTTHUMG00000156579.1 +45734 chr3 HAVANA gene 186698520 186708574 845.0 + 0 ENSG00000226724.1 unprocessed_pseudogene AC109780.2 2 OTTHUMG00000156577.1 +45735 chr3 HAVANA gene 186717276 186744410 4675.0 + 0 ENSG00000113889.13 protein_coding KNG1 2 OTTHUMG00000150348.7 +45736 chr3 HAVANA gene 186760693 186762050 1087.0 + 0 ENSG00000226652.3 transcribed_processed_pseudogene PSMD10P2 1 OTTHUMG00000156575.2 pseudo_consens +45737 chr3 ENSEMBL gene 186771841 186771947 107.0 - 0 ENSG00000207505.1 snRNA RNU6-1105P 3 +45738 chr3 HAVANA gene 186579476 186772986 11099.0 - 0 ENSG00000197099.8 antisense AC068631.1 2 OTTHUMG00000156574.8 ncRNA_host +45739 chr3 HAVANA gene 186772589 186773476 888.0 + 0 ENSG00000230951.1 processed_pseudogene GPS2P2 1 OTTHUMG00000156576.1 pseudo_consens +45740 chr3 HAVANA gene 186781780 186784179 2400.0 - 0 ENSG00000263826.1 antisense AC112907.3 2 OTTHUMG00000178374.1 +45741 chr3 ENSEMBL gene 186784796 186784864 69.0 + 0 ENSG00000238942.1 snoRNA SNORD2 3 +45742 chr3 ENSEMBL gene 186786323 186786445 123.0 + 0 ENSG00000200418.1 snoRNA RF00092 3 +45743 chr3 ENSEMBL gene 186786672 186786777 106.0 + 0 ENSG00000283958.1 miRNA MIR1248 3 +45744 chr3 ENSEMBL gene 186786675 186786852 178.0 + 0 ENSG00000221420.2 snoRNA SNORA81 3 +45745 chr3 ENSEMBL gene 186787300 186787431 132.0 + 0 ENSG00000200320.1 snoRNA SNORA63 3 +45746 chr3 ENSEMBL gene 186787612 186787749 138.0 + 0 ENSG00000263776.1 snoRNA SNORA4 3 +45747 chr3 HAVANA gene 186783205 186789900 6133.0 + 0 ENSG00000156976.16 protein_coding EIF4A2 2 OTTHUMG00000156564.5 ncRNA_host +45748 chr3 HAVANA gene 186789880 186807058 2997.0 - 0 ENSG00000163918.10 protein_coding RFC4 2 OTTHUMG00000156515.8 +45749 chr3 HAVANA gene 186807692 186818121 540.0 + 0 ENSG00000231724.1 antisense AC112907.1 2 OTTHUMG00000156519.1 +45750 chr3 HAVANA gene 186810880 186825521 1832.0 - 0 ENSG00000232233.1 lincRNA LINC02043 2 OTTHUMG00000156520.1 +45751 chr3 HAVANA gene 186826549 186827337 330.0 + 0 ENSG00000231982.1 unprocessed_pseudogene AC112907.2 2 OTTHUMG00000156518.1 +45752 chr3 HAVANA gene 186851886 186856123 3443.0 - 0 ENSG00000226482.1 antisense ADIPOQ-AS1 2 OTTHUMG00000156514.1 +45753 chr3 HAVANA gene 186842690 186858463 4613.0 + 0 ENSG00000181092.9 protein_coding ADIPOQ 2 OTTHUMG00000156521.2 +45754 chr3 HAVANA gene 186900198 186900557 360.0 + 0 ENSG00000223803.1 processed_pseudogene RPS20P14 1 OTTHUMG00000156517.1 pseudo_consens +45755 chr3 HAVANA gene 186922286 186922753 468.0 - 0 ENSG00000233565.1 processed_pseudogene AC007690.1 1 OTTHUMG00000156516.1 pseudo_consens +45756 chr3 HAVANA gene 186930485 187078553 9151.0 + 0 ENSG00000073849.14 protein_coding ST6GAL1 1 OTTHUMG00000156500.3 +45757 chr3 HAVANA gene 187120948 187180908 1060.0 - 0 ENSG00000163923.9 protein_coding RPL39L 2 OTTHUMG00000156465.2 retrogene +45758 chr3 HAVANA gene 187197486 187201465 2217.0 + 0 ENSG00000175077.5 protein_coding RTP1 2 OTTHUMG00000149886.2 +45759 chr3 HAVANA gene 187197090 187207629 2674.0 - 0 ENSG00000198491.3 antisense AC007920.1 2 OTTHUMG00000156463.1 +45760 chr3 HAVANA gene 187217285 187292022 13161.0 - 0 ENSG00000127241.16 protein_coding MASP1 1 OTTHUMG00000156461.4 +45761 chr3 HAVANA gene 187291272 187297933 1973.0 + 0 ENSG00000283175.1 antisense AC007920.2 2 OTTHUMG00000191675.1 +45762 chr3 HAVANA gene 187368332 187372076 1554.0 + 0 ENSG00000136514.2 protein_coding RTP4 2 OTTHUMG00000156459.1 +45763 chr3 HAVANA gene 187383101 187384849 1749.0 + 0 ENSG00000280270.1 TEC AC068299.1 2 OTTHUMG00000175857.1 +45764 chr3 ENSEMBL gene 187423315 187423419 105.0 + 0 ENSG00000239093.1 snoRNA RF01210 3 +45765 chr3 HAVANA gene 187448845 187449450 246.0 + 0 ENSG00000228952.1 lincRNA LINC02041 2 OTTHUMG00000156460.1 +45766 chr3 HAVANA gene 187668906 187670399 618.0 - 0 ENSG00000157005.3 protein_coding SST 2 OTTHUMG00000156462.1 +45767 chr3 HAVANA gene 187698259 187702557 1346.0 - 0 ENSG00000198471.1 protein_coding RTP2 2 OTTHUMG00000156458.1 +45768 chr3 HAVANA gene 187702313 187733849 717.0 + 0 ENSG00000228804.5 antisense AC072022.1 1 OTTHUMG00000156439.2 +45769 chr3 HAVANA gene 187721377 187745727 5938.0 - 0 ENSG00000113916.17 protein_coding BCL6 1 OTTHUMG00000156441.3 +45770 chr3 HAVANA gene 187743686 187746028 1144.0 + 0 ENSG00000285938.1 antisense AC072022.2 2 OTTHUMG00000156440.3 +45771 chr3 HAVANA gene 187796187 187805258 778.0 + 0 ENSG00000224049.1 lincRNA AC108681.1 1 OTTHUMG00000156394.1 +45772 chr3 HAVANA gene 187932764 187946221 153.0 - 0 ENSG00000236864.1 lincRNA AC068295.1 2 OTTHUMG00000156392.1 +45773 chr3 HAVANA gene 187958775 187976407 1713.0 - 0 ENSG00000224187.1 lincRNA LINC01991 1 OTTHUMG00000156391.1 +45774 chr3 HAVANA gene 188001700 188003406 1008.0 - 0 ENSG00000236412.1 lincRNA AC092941.2 1 OTTHUMG00000156393.1 overlapping_locus +45775 chr3 HAVANA gene 187997422 188003990 427.0 - 0 ENSG00000225058.1 lincRNA AC092941.1 1 OTTHUMG00000156396.1 overlapping_locus +45776 chr3 HAVANA gene 188107096 188147020 696.0 + 0 ENSG00000234238.1 lincRNA AC022498.1 2 OTTHUMG00000156395.1 +45777 chr3 HAVANA gene 188151206 188154057 2852.0 - 0 ENSG00000270959.1 antisense LPP-AS2 2 OTTHUMG00000185119.1 +45778 chr3 HAVANA gene 188178543 188180812 2270.0 + 0 ENSG00000279891.1 TEC FLJ42393 2 OTTHUMG00000187182.1 overlapping_locus +45779 chr3 HAVANA gene 188562238 188568666 494.0 - 0 ENSG00000224563.1 antisense LPP-AS1 1 OTTHUMG00000156388.1 +45780 chr3 ENSEMBL gene 188688781 188688866 86.0 + 0 ENSG00000207651.1 miRNA MIR28 3 +45781 chr3 HAVANA gene 188153284 188890671 25535.0 + 0 ENSG00000145012.13 protein_coding LPP 1 OTTHUMG00000156387.5 ncRNA_host,overlapping_locus +45782 chr3 HAVANA gene 188941715 188947639 697.0 - 0 ENSG00000234076.1 lincRNA TPRG1-AS1 1 OTTHUMG00000156324.1 +45783 chr3 HAVANA gene 188989382 188990135 754.0 - 0 ENSG00000236182.1 processed_pseudogene AC009319.1 1 OTTHUMG00000156322.1 pseudo_consens +45784 chr3 HAVANA gene 189238686 189240594 479.0 - 0 ENSG00000230115.1 antisense TPRG1-AS2 1 OTTHUMG00000156323.1 +45785 chr3 HAVANA gene 188947214 189325304 9535.0 + 0 ENSG00000188001.9 protein_coding TPRG1 1 OTTHUMG00000156321.5 +45786 chr3 HAVANA gene 189645327 189645466 140.0 - 0 ENSG00000227971.1 processed_pseudogene AC078809.1 2 OTTHUMG00000156316.1 +45787 chr3 ENSEMBL gene 189829922 189830009 88.0 + 0 ENSG00000216058.1 miRNA MIR944 3 +45788 chr3 HAVANA gene 189631416 189897279 7454.0 + 0 ENSG00000073282.12 protein_coding TP63 2 OTTHUMG00000156313.2 ncRNA_host +45789 chr3 HAVANA gene 189969030 189969861 832.0 - 0 ENSG00000230077.1 processed_pseudogene MTAPP2 1 OTTHUMG00000156314.1 pseudo_consens,overlapping_locus +45790 chr3 HAVANA gene 189956728 190122437 5605.0 - 0 ENSG00000090530.9 protein_coding P3H2 2 OTTHUMG00000156312.5 overlapping_locus +45791 chr3 HAVANA gene 190120964 190144846 730.0 + 0 ENSG00000225764.1 antisense P3H2-AS1 2 OTTHUMG00000156311.1 +45792 chr3 ENSEMBL gene 190165417 190165523 107.0 - 0 ENSG00000212489.1 snRNA RNU6-1109P 3 +45793 chr3 HAVANA gene 190166764 190167651 888.0 + 0 ENSG00000238077.1 processed_pseudogene NMNAT1P3 1 OTTHUMG00000156232.1 pseudo_consens +45794 chr3 HAVANA gene 190305701 190322475 3663.0 - 0 ENSG00000163347.5 protein_coding CLDN1 2 OTTHUMG00000156214.2 +45795 chr3 HAVANA gene 190322541 190412143 3583.0 + 0 ENSG00000113946.3 protein_coding CLDN16 2 OTTHUMG00000156215.1 +45796 chr3 HAVANA gene 190428655 190449876 1448.0 - 0 ENSG00000198398.2 protein_coding TMEM207 2 OTTHUMG00000156213.1 +45797 chr3 HAVANA gene 190624595 190625169 575.0 + 0 ENSG00000231047.1 processed_pseudogene GCNT1P3 2 OTTHUMG00000156212.1 overlapping_locus +45798 chr3 ENSEMBL gene 190642163 190642503 341.0 + 0 ENSG00000223117.1 misc_RNA RN7SKP296 3 +45799 chr3 HAVANA gene 190659216 190659750 535.0 + 0 ENSG00000273370.1 lincRNA AC108747.1 2 OTTHUMG00000186135.1 +45800 chr3 HAVANA gene 190514051 190659750 11558.0 + 0 ENSG00000196083.9 protein_coding IL1RAP 1 OTTHUMG00000156211.3 ncRNA_host,overlapping_locus +45801 chr3 HAVANA gene 190697923 190698848 526.0 - 0 ENSG00000228730.1 lincRNA LINC02013 2 OTTHUMG00000156193.1 +45802 chr3 HAVANA gene 190714811 190716399 1589.0 + 0 ENSG00000232610.1 processed_pseudogene CCT6P4 1 OTTHUMG00000156191.1 pseudo_consens +45803 chr3 HAVANA gene 190830965 190832173 1209.0 + 0 ENSG00000214147.2 processed_pseudogene AC092952.1 1 OTTHUMG00000156194.1 pseudo_consens +45804 chr3 HAVANA gene 190852877 190892429 3804.0 - 0 ENSG00000205835.8 protein_coding GMNC 2 OTTHUMG00000156195.1 +45805 chr3 HAVANA gene 191213291 191234605 515.0 - 0 ENSG00000233308.1 antisense OSTN-AS1 2 OTTHUMG00000156189.1 +45806 chr3 HAVANA gene 191199241 191265615 3219.0 + 0 ENSG00000188729.6 protein_coding OSTN 2 OTTHUMG00000156190.2 +45807 chr3 HAVANA gene 191267168 191330536 3850.0 - 0 ENSG00000188958.9 protein_coding UTS2B 2 OTTHUMG00000156192.2 +45808 chr3 HAVANA gene 191329077 191398670 9202.0 + 0 ENSG00000152492.14 protein_coding CCDC50 2 OTTHUMG00000156177.2 +45809 chr3 HAVANA gene 191461163 191461456 294.0 + 0 ENSG00000253548.1 protein_coding PYDC2 2 OTTHUMG00000156167.4 +45810 chr3 HAVANA gene 191425526 191591097 2535.0 + 0 ENSG00000223812.6 lincRNA AC073365.1 2 OTTHUMG00000156168.2 +45811 chr3 ENSEMBL gene 191641135 191641237 103.0 + 0 ENSG00000201860.1 misc_RNA RF00019 3 +45812 chr3 HAVANA gene 191952349 191952826 478.0 - 0 ENSG00000237653.2 processed_pseudogene AC026320.2 1 OTTHUMG00000156147.1 pseudo_consens +45813 chr3 HAVANA gene 192029880 192036557 903.0 + 0 ENSG00000232353.5 lincRNA AC026320.1 2 OTTHUMG00000156146.1 +45814 chr3 ENSEMBL gene 192093122 192093436 315.0 + 0 ENSG00000222583.1 misc_RNA RN7SKP222 3 +45815 chr3 HAVANA gene 192238037 192283097 1080.0 + 0 ENSG00000231383.2 antisense FGF12-AS1 2 OTTHUMG00000156141.2 +45816 chr3 HAVANA gene 192515022 192516573 580.0 + 0 ENSG00000230126.1 antisense FGF12-AS2 1 OTTHUMG00000156143.1 +45817 chr3 HAVANA gene 192516831 192521398 291.0 + 0 ENSG00000226709.1 antisense FGF12-AS3 2 OTTHUMG00000156142.1 +45818 chr3 ENSEMBL gene 192534009 192534112 104.0 - 0 ENSG00000238902.1 snoRNA RF01210 3 +45819 chr3 ENSEMBL gene 192729555 192729716 162.0 - 0 ENSG00000200184.1 snRNA RNU1-20P 3 +45820 chr3 HAVANA gene 192139395 192767764 7355.0 - 0 ENSG00000114279.13 protein_coding FGF12 2 OTTHUMG00000156132.5 ncRNA_host +45821 chr3 HAVANA gene 192796815 192918161 3368.0 - 0 ENSG00000180611.6 protein_coding MB21D2 2 OTTHUMG00000155768.1 +45822 chr3 HAVANA gene 193155456 193157208 1541.0 - 0 ENSG00000236229.1 processed_pseudogene VEZF1P1 2 OTTHUMG00000156103.1 overlapping_locus +45823 chr3 HAVANA gene 193144464 193176864 526.0 - 0 ENSG00000232130.1 lincRNA AC092966.1 1 OTTHUMG00000156107.1 overlapping_locus +45824 chr3 HAVANA gene 193241125 193277738 1169.0 + 0 ENSG00000127252.5 protein_coding HRASLS 2 OTTHUMG00000156104.2 +45825 chr3 HAVANA gene 193307244 193314362 476.0 + 0 ENSG00000236508.1 antisense ATP13A5-AS1 1 OTTHUMG00000156106.1 +45826 chr3 HAVANA gene 193274790 193378843 6228.0 - 0 ENSG00000187527.10 protein_coding ATP13A5 2 OTTHUMG00000156101.2 +45827 chr3 HAVANA gene 193553213 193555088 1046.0 + 0 ENSG00000225473.1 antisense ATP13A4-AS1 2 OTTHUMG00000156102.1 +45828 chr3 HAVANA gene 193578812 193593090 924.0 - 0 ENSG00000236297.1 transcribed_processed_pseudogene AC048351.1 1 OTTHUMG00000156105.1 pseudo_consens,overlapping_locus +45829 chr3 HAVANA gene 193402077 193593111 6013.0 - 0 ENSG00000127249.14 protein_coding ATP13A4 2 OTTHUMG00000074067.6 overlapping_locus +45830 chr3 ENSEMBL gene 193624189 193624301 113.0 + 0 ENSG00000207370.1 misc_RNA RF00019 3 +45831 chr3 HAVANA gene 193618609 193627337 497.0 - 0 ENSG00000224855.5 antisense OPA1-AS1 2 OTTHUMG00000156072.1 +45832 chr3 HAVANA gene 193593144 193697823 8448.0 + 0 ENSG00000198836.9 protein_coding OPA1 1 OTTHUMG00000149897.21 ncRNA_host +45833 chr3 ENSEMBL gene 193740471 193740715 245.0 - 0 ENSG00000243991.3 misc_RNA RN7SL447P 3 +45834 chr3 HAVANA gene 193765681 193766003 323.0 + 0 ENSG00000223986.1 processed_pseudogene AC069421.1 1 OTTHUMG00000156054.1 pseudo_consens +45835 chr3 HAVANA gene 193842560 193844024 984.0 - 0 ENSG00000229155.1 lincRNA LINC02038 1 OTTHUMG00000156053.1 +45836 chr3 HAVANA gene 193993331 193993985 655.0 - 0 ENSG00000224403.1 processed_pseudogene DPPA2P3 1 OTTHUMG00000155990.1 pseudo_consens,overlapping_locus +45837 chr3 HAVANA gene 193957372 194003659 2335.0 - 0 ENSG00000214146.2 lincRNA LINC02026 1 OTTHUMG00000155981.1 overlapping_locus +45838 chr3 HAVANA gene 193980614 194006098 566.0 + 0 ENSG00000238043.1 lincRNA AC024559.1 1 OTTHUMG00000155987.1 +45839 chr3 HAVANA gene 194005259 194070970 7346.0 - 0 ENSG00000230102.7 processed_transcript LINC02028 2 OTTHUMG00000155989.5 +45840 chr3 HAVANA gene 194070103 194080443 585.0 + 0 ENSG00000276407.4 lincRNA AC024559.2 2 OTTHUMG00000188112.1 +45841 chr3 HAVANA gene 194091561 194109174 406.0 + 0 ENSG00000229964.1 lincRNA AC080129.1 1 OTTHUMG00000155980.1 +45842 chr3 HAVANA gene 194130616 194131201 430.0 - 0 ENSG00000232874.1 antisense AC080129.2 2 OTTHUMG00000155988.1 +45843 chr3 HAVANA gene 194136145 194138732 2062.0 + 0 ENSG00000114315.3 protein_coding HES1 2 OTTHUMG00000155984.1 +45844 chr3 ENSEMBL gene 194145674 194145971 298.0 + 0 ENSG00000242201.3 misc_RNA RN7SL215P 3 +45845 chr3 HAVANA gene 194203016 194250153 970.0 - 0 ENSG00000225742.5 lincRNA LINC02036 2 OTTHUMG00000155985.1 +45846 chr3 HAVANA gene 194247648 194257772 1195.0 + 0 ENSG00000238097.1 lincRNA LINC02037 1 OTTHUMG00000155986.1 +45847 chr3 HAVANA gene 194276682 194287368 1771.0 + 0 ENSG00000228271.1 lincRNA LINC02048 1 OTTHUMG00000155983.1 +45848 chr3 HAVANA gene 194296465 194312803 4153.0 - 0 ENSG00000214145.6 lincRNA LINC00887 2 OTTHUMG00000155982.1 +45849 chr3 HAVANA gene 194339765 194351328 3028.0 - 0 ENSG00000178772.6 protein_coding CPN2 2 OTTHUMG00000156047.2 +45850 chr3 HAVANA gene 194355247 194369743 5940.0 - 0 ENSG00000172061.8 protein_coding LRRC15 2 OTTHUMG00000156048.2 +45851 chr3 HAVANA gene 194394821 194398354 3534.0 - 0 ENSG00000178732.5 protein_coding GP5 2 OTTHUMG00000150345.1 retrogene +45852 chr3 HAVANA gene 194471923 194472085 163.0 + 0 ENSG00000271483.1 processed_pseudogene AC108676.2 2 OTTHUMG00000184288.1 +45853 chr3 HAVANA gene 194402672 194498364 11864.0 - 0 ENSG00000133657.15 protein_coding ATP13A3 2 OTTHUMG00000156034.12 overlapping_locus +45854 chr3 HAVANA gene 194496317 194501503 2969.0 - 0 ENSG00000244675.2 sense_overlapping AC108676.1 2 OTTHUMG00000156035.2 overlapping_locus +45855 chr3 HAVANA gene 194487454 194518279 2922.0 + 0 ENSG00000233058.1 antisense LINC00884 1 OTTHUMG00000156037.1 +45856 chr3 ENSEMBL gene 194533503 194533583 81.0 - 0 ENSG00000252053.1 snRNA RNU6-1101P 3 +45857 chr3 HAVANA gene 194562978 194564001 484.0 - 0 ENSG00000232873.1 processed_pseudogene RPL23AP93 2 OTTHUMG00000156036.1 +45858 chr3 HAVANA gene 194584011 194590260 1119.0 + 0 ENSG00000231770.5 antisense TMEM44-AS1 1 OTTHUMG00000156027.2 +45859 chr3 HAVANA gene 194587673 194633689 4561.0 - 0 ENSG00000145014.17 protein_coding TMEM44 1 OTTHUMG00000156023.3 +45860 chr3 HAVANA gene 194637505 194637664 160.0 - 0 ENSG00000272707.1 lincRNA AC046143.2 2 OTTHUMG00000186145.1 +45861 chr3 HAVANA gene 194632923 194645401 972.0 + 0 ENSG00000229334.1 antisense AC046143.1 1 OTTHUMG00000156018.1 +45862 chr3 HAVANA gene 194640788 194672477 4818.0 - 0 ENSG00000041802.10 protein_coding LSG1 1 OTTHUMG00000156021.2 +45863 chr3 HAVANA gene 194686544 194689037 2494.0 + 0 ENSG00000185112.5 protein_coding FAM43A 2 OTTHUMG00000156016.1 +45864 chr3 HAVANA gene 194705548 194706964 556.0 + 0 ENSG00000233987.1 lincRNA AC106706.1 1 OTTHUMG00000156019.1 +45865 chr3 HAVANA gene 194755589 194757422 1834.0 + 0 ENSG00000234805.1 processed_pseudogene AC090505.1 1 OTTHUMG00000156026.1 pseudo_consens,overlapping_locus +45866 chr3 HAVANA gene 194765238 194768712 553.0 - 0 ENSG00000230401.1 lincRNA LINC01972 1 OTTHUMG00000156022.1 +45867 chr3 HAVANA gene 194708421 194782168 4181.0 + 0 ENSG00000237222.3 lincRNA LINC01968 1 OTTHUMG00000156020.1 overlapping_locus +45868 chr3 HAVANA gene 194827890 194832592 464.0 + 0 ENSG00000238031.1 lincRNA AC090505.2 1 OTTHUMG00000156017.1 +45869 chr3 HAVANA gene 195094588 195096057 431.0 + 0 ENSG00000233303.1 antisense XXYLT1-AS1 2 OTTHUMG00000155917.1 +45870 chr3 ENSEMBL gene 195134506 195134580 75.0 - 0 ENSG00000265333.1 miRNA MIR3137 3 +45871 chr3 ENSEMBL gene 195146728 195147003 276.0 - 0 ENSG00000244314.3 misc_RNA RN7SL36P 3 +45872 chr3 HAVANA gene 195147871 195152790 784.0 + 0 ENSG00000230266.1 antisense XXYLT1-AS2 1 OTTHUMG00000155916.1 +45873 chr3 ENSEMBL gene 195214787 195214893 107.0 + 0 ENSG00000206600.1 snRNA RNU6-25P 3 +45874 chr3 HAVANA gene 195068279 195271167 5409.0 - 0 ENSG00000173950.15 protein_coding XXYLT1 1 OTTHUMG00000155915.3 ncRNA_host +45875 chr3 HAVANA gene 195280723 195282741 690.0 - 0 ENSG00000229325.1 sense_intronic ACAP2-IT1 2 OTTHUMG00000155905.1 overlapping_locus +45876 chr3 HAVANA gene 195349664 195350030 367.0 + 0 ENSG00000227433.1 processed_pseudogene AC090018.1 1 OTTHUMG00000155906.1 pseudo_consens +45877 chr3 ENSEMBL gene 195419436 195419546 111.0 - 0 ENSG00000207368.1 misc_RNA RF00019 3 +45878 chr3 HAVANA gene 195274736 195443078 11139.0 - 0 ENSG00000114331.13 protein_coding ACAP2 1 OTTHUMG00000155885.7 ncRNA_host,overlapping_locus +45879 chr3 ENSEMBL gene 195523087 195523221 135.0 - 0 ENSG00000252620.1 snRNA RNU6ATAC24P 3 +45880 chr3 HAVANA gene 195514425 195543386 5126.0 - 0 ENSG00000184203.7 protein_coding PPP1R2 2 OTTHUMG00000155887.5 ncRNA_host +45881 chr3 HAVANA gene 195544048 195550581 1041.0 + 0 ENSG00000223711.1 antisense AC069213.1 1 OTTHUMG00000155888.2 +45882 chr3 ENSEMBL gene 195553792 195554043 252.0 + 0 ENSG00000265882.2 misc_RNA RN7SL73P 3 +45883 chr3 HAVANA gene 195554610 195555083 474.0 + 0 ENSG00000236844.1 processed_pseudogene AC069213.3 1 OTTHUMG00000155886.1 pseudo_consens +45884 chr3 HAVANA gene 195561215 195561580 366.0 - 0 ENSG00000236425.1 processed_pseudogene AC069213.2 1 OTTHUMG00000155884.1 pseudo_consens +45885 chr3 HAVANA gene 195568702 195584205 2197.0 - 0 ENSG00000189058.8 protein_coding APOD 2 OTTHUMG00000155854.2 +45886 chr3 HAVANA gene 195614947 195620233 1680.0 + 0 ENSG00000224769.1 unprocessed_pseudogene MUC20P1 2 OTTHUMG00000155856.1 +45887 chr3 HAVANA gene 195635188 195636301 136.0 + 0 ENSG00000282206.1 unprocessed_pseudogene AC233280.19 2 OTTHUMG00000190540.1 +45888 chr3 HAVANA gene 195650146 195651472 1070.0 - 0 ENSG00000271662.1 processed_pseudogene AC233280.2 1 OTTHUMG00000184347.1 pseudo_consens +45889 chr3 HAVANA gene 195655565 195657927 1684.0 - 0 ENSG00000229178.1 lincRNA AC233280.1 2 OTTHUMG00000155836.1 +45890 chr3 HAVANA gene 195658096 195685904 2001.0 + 0 ENSG00000215837.7 transcribed_unprocessed_pseudogene SDHAP2 2 OTTHUMG00000155835.1 overlapping_locus +45891 chr3 ENSEMBL gene 195699401 195699497 97.0 + 0 ENSG00000207650.1 miRNA MIR570 3 +45892 chr3 HAVANA gene 195701618 195711643 416.0 + 0 ENSG00000283426.1 transcribed_unitary_pseudogene SMBD1P 2 OTTHUMG00000182568.1 overlapping_locus +45893 chr3 HAVANA gene 195658062 195739964 17599.0 + 0 ENSG00000242086.8 lincRNA MUC20-OT1 1 OTTHUMG00000155834.14 ncRNA_host,overlapping_locus +45894 chr3 HAVANA gene 195720882 195741123 4249.0 + 0 ENSG00000176945.16 protein_coding MUC20 1 OTTHUMG00000155823.2 overlapping_locus +45895 chr3 HAVANA gene 195746765 195812277 21325.0 - 0 ENSG00000145113.21 protein_coding MUC4 1 OTTHUMG00000151827.6 +45896 chr3 HAVANA gene 195843986 195844596 611.0 + 0 ENSG00000235836.1 processed_pseudogene KIF3AP1 1 OTTHUMG00000155826.1 pseudo_consens +45897 chr3 HAVANA gene 195836193 195860404 943.0 - 0 ENSG00000223783.1 lincRNA LINC01983 1 OTTHUMG00000155824.1 +45898 chr3 ENSEMBL gene 195882329 195882395 67.0 - 0 ENSG00000276489.1 miRNA MIR6829 3 +45899 chr3 HAVANA gene 195908076 195911257 2096.0 + 0 ENSG00000224614.1 antisense TNK2-AS1 2 OTTHUMG00000155738.1 +45900 chr3 HAVANA gene 195863364 195911945 11297.0 - 0 ENSG00000061938.17 protein_coding TNK2 1 OTTHUMG00000155737.8 ncRNA_host +45901 chr3 HAVANA gene 195912049 195913986 741.0 + 0 ENSG00000226155.1 antisense AC124944.1 2 OTTHUMG00000155825.1 +45902 chr3 ENSEMBL gene 195928589 195928775 187.0 - 0 ENSG00000239122.1 snRNA RNU2-11P 3 +45903 chr3 HAVANA gene 195937243 195938739 1242.0 + 0 ENSG00000231443.2 processed_pseudogene AC124944.2 1 OTTHUMG00000155736.1 pseudo_consens +45904 chr3 HAVANA gene 195913078 195954485 5485.0 - 0 ENSG00000260261.2 transcribed_unprocessed_pseudogene AC124944.3 2 OTTHUMG00000175858.2 +45905 chr3 HAVANA gene 195959748 195990318 3353.0 - 0 ENSG00000185485.14 transcribed_unprocessed_pseudogene SDHAP1 2 OTTHUMG00000155716.1 +45906 chr3 HAVANA gene 195996738 195998233 1242.0 + 0 ENSG00000231464.1 processed_pseudogene AC024937.2 1 OTTHUMG00000155715.1 pseudo_consens +45907 chr3 HAVANA gene 196044695 196045254 344.0 + 0 ENSG00000228413.1 processed_pseudogene AC024937.1 1 OTTHUMG00000155717.1 pseudo_consens +45908 chr3 ENSEMBL gene 196072819 196072880 62.0 + 0 ENSG00000252174.1 snRNA RNU7-18P 3 +45909 chr3 HAVANA gene 196027183 196082189 7887.0 - 0 ENSG00000072274.12 protein_coding TFRC 2 OTTHUMG00000155714.2 +45910 chr3 HAVANA gene 196142636 196160890 1828.0 + 0 ENSG00000224652.1 lincRNA LINC00885 1 OTTHUMG00000155713.1 +45911 chr3 ENSEMBL gene 196202349 196202453 105.0 + 0 ENSG00000222335.1 misc_RNA RF00019 3 +45912 chr3 HAVANA gene 196197449 196211437 2432.0 - 0 ENSG00000163958.13 protein_coding ZDHHC19 2 OTTHUMG00000133642.3 +45913 chr3 HAVANA gene 196211487 196243178 5293.0 + 0 ENSG00000163959.9 protein_coding SLC51A 1 OTTHUMG00000155684.3 +45914 chr3 HAVANA gene 196250542 196251654 429.0 + 0 ENSG00000228028.2 antisense AC069257.1 2 OTTHUMG00000155671.2 +45915 chr3 HAVANA gene 196214222 196287957 7978.0 - 0 ENSG00000161217.11 protein_coding PCYT1A 1 OTTHUMG00000155670.2 overlapping_locus +45916 chr3 HAVANA gene 196298061 196298215 155.0 - 0 ENSG00000237418.1 processed_pseudogene AC069257.2 1 OTTHUMG00000155673.1 pseudo_consens,overlapping_locus +45917 chr3 HAVANA gene 196248230 196318222 708.0 - 0 ENSG00000272741.1 protein_coding AC069257.3 2 OTTHUMG00000155672.1 overlapping_locus +45918 chr3 HAVANA gene 196291219 196318299 1246.0 - 0 ENSG00000213123.10 protein_coding TCTEX1D2 1 OTTHUMG00000186382.1 overlapping_locus +45919 chr3 HAVANA gene 196318330 196325570 2136.0 + 0 ENSG00000235897.1 antisense TM4SF19-AS1 1 OTTHUMG00000155669.1 +45920 chr3 HAVANA gene 196316082 196338373 964.0 - 0 ENSG00000273331.1 protein_coding TM4SF19-TCTEX1D2 2 OTTHUMG00000186464.1 overlapping_locus +45921 chr3 HAVANA gene 196319342 196338503 1899.0 - 0 ENSG00000145107.15 protein_coding TM4SF19 1 OTTHUMG00000155675.2 overlapping_locus +45922 chr3 ENSEMBL gene 196341609 196341715 107.0 - 0 ENSG00000212146.1 snRNA RNU6-910P 3 +45923 chr3 ENSEMBL gene 196393710 196393812 103.0 - 0 ENSG00000206644.1 snRNA RNU6-1279P 3 +45924 chr3 ENSEMBL gene 196397508 196397778 271.0 - 0 ENSG00000241868.3 misc_RNA RN7SL434P 3 +45925 chr3 ENSEMBL gene 196399911 196400207 297.0 + 0 ENSG00000243339.3 misc_RNA RN7SL738P 3 +45926 chr3 HAVANA gene 196423322 196423522 201.0 + 0 ENSG00000226345.1 processed_pseudogene AC083822.1 1 OTTHUMG00000155668.1 pseudo_consens +45927 chr3 HAVANA gene 196347662 196432474 11291.0 - 0 ENSG00000163960.11 protein_coding UBXN7 2 OTTHUMG00000155639.4 ncRNA_host +45928 chr3 HAVANA gene 196431385 196432530 386.0 + 0 ENSG00000225822.4 antisense UBXN7-AS1 2 OTTHUMG00000155674.1 +45929 chr3 HAVANA gene 196452996 196453055 60.0 - 0 ENSG00000225240.1 unprocessed_pseudogene AC117490.1 2 OTTHUMG00000155622.1 +45930 chr3 HAVANA gene 196474801 196475394 594.0 + 0 ENSG00000273013.1 antisense AC117490.2 2 OTTHUMG00000186157.1 +45931 chr3 HAVANA gene 196468783 196503768 5347.0 - 0 ENSG00000163961.4 protein_coding RNF168 2 OTTHUMG00000155582.1 +45932 chr3 HAVANA gene 196506877 196515366 1868.0 - 0 ENSG00000214097.4 protein_coding SMCO1 2 OTTHUMG00000155581.1 +45933 chr3 HAVANA gene 196527339 196528791 945.0 - 0 ENSG00000213358.3 unprocessed_pseudogene AC092933.1 1 OTTHUMG00000155583.1 pseudo_consens +45934 chr3 HAVANA gene 196536532 196536702 171.0 + 0 ENSG00000225770.1 processed_pseudogene RPS29P3 1 OTTHUMG00000155584.1 pseudo_consens +45935 chr3 HAVANA gene 196554177 196568674 1797.0 - 0 ENSG00000185798.7 protein_coding WDR53 1 OTTHUMG00000155572.7 +45936 chr3 HAVANA gene 196568611 196589059 5976.0 + 0 ENSG00000174013.7 protein_coding FBXO45 2 OTTHUMG00000155571.2 +45937 chr3 HAVANA gene 196631498 196632587 348.0 - 0 ENSG00000232065.1 antisense LINC01063 2 OTTHUMG00000155570.1 +45938 chr3 HAVANA gene 196639686 196662004 2910.0 + 0 ENSG00000174004.5 protein_coding NRROS 2 OTTHUMG00000155569.1 overlapping_locus +45939 chr3 ENSEMBL gene 196708859 196708964 106.0 - 0 ENSG00000201441.1 snRNA RNU6-646P 3 +45940 chr3 HAVANA gene 196706277 196712293 2201.0 - 0 ENSG00000174007.7 protein_coding CEP19 1 OTTHUMG00000153933.2 ncRNA_host +45941 chr3 HAVANA gene 196639775 196736007 4446.0 + 0 ENSG00000163964.14 protein_coding PIGX 2 OTTHUMG00000155535.3 overlapping_locus +45942 chr3 ENSEMBL gene 196747192 196747324 133.0 - 0 ENSG00000272359.1 snRNA RNU4-89P 3 +45943 chr3 ENSEMBL gene 196784980 196785086 107.0 - 0 ENSG00000206892.1 snRNA RNU6-42P 3 +45944 chr3 HAVANA gene 196739857 196832647 6270.0 + 0 ENSG00000180370.10 protein_coding PAK2 2 OTTHUMG00000155534.2 +45945 chr3 HAVANA gene 196912646 196914579 1413.0 + 0 ENSG00000230732.4 sense_intronic AC016949.1 2 OTTHUMG00000155528.4 overlapping_locus +45946 chr3 HAVANA gene 196867856 196934714 7035.0 + 0 ENSG00000119231.10 protein_coding SENP5 1 OTTHUMG00000155527.1 overlapping_locus +45947 chr3 HAVANA gene 196939877 196942534 562.0 + 0 ENSG00000225578.1 antisense NCBP2-AS1 2 OTTHUMG00000155523.1 +45948 chr3 HAVANA gene 196935402 196942597 5114.0 - 0 ENSG00000114503.10 protein_coding NCBP2 1 OTTHUMG00000155520.4 +45949 chr3 HAVANA gene 196942623 196943540 918.0 + 0 ENSG00000270170.1 protein_coding NCBP2-AS2 2 OTTHUMG00000184107.2 +45950 chr3 HAVANA gene 196946343 196969060 3211.0 - 0 ENSG00000119227.7 protein_coding PIGZ 1 OTTHUMG00000155522.2 +45951 chr3 HAVANA gene 196983890 196987558 1189.0 - 0 ENSG00000233487.6 transcribed_processed_pseudogene RPSAP69 1 OTTHUMG00000155521.1 pseudo_consens +45952 chr3 HAVANA gene 196999460 197004744 1139.0 + 0 ENSG00000228109.1 antisense MELTF-AS1 1 OTTHUMG00000155519.1 +45953 chr3 HAVANA gene 196988621 197029816 8393.0 - 0 ENSG00000163975.11 protein_coding MELTF 2 OTTHUMG00000155518.2 +45954 chr3 ENSEMBL gene 197293878 197293948 71.0 - 0 ENSG00000265850.1 miRNA MIR4797 3 +45955 chr3 HAVANA gene 197042560 197299300 11001.0 - 0 ENSG00000075711.20 protein_coding DLG1 2 OTTHUMG00000047972.11 ncRNA_host +45956 chr3 HAVANA gene 197298252 197303747 1694.0 + 0 ENSG00000227375.5 antisense DLG1-AS1 1 OTTHUMG00000155484.1 +45957 chr3 HAVANA gene 197450327 197456654 600.0 - 0 ENSG00000229912.1 lincRNA AC128709.1 1 OTTHUMG00000155483.1 overlapping_locus +45958 chr3 HAVANA gene 197445061 197458323 558.0 - 0 ENSG00000235126.1 lincRNA AC128709.2 1 OTTHUMG00000155481.1 overlapping_locus +45959 chr3 HAVANA gene 197458405 197467105 626.0 + 0 ENSG00000237167.1 lincRNA AC128709.3 2 OTTHUMG00000155482.1 +45960 chr3 HAVANA gene 197505262 197506986 1725.0 - 0 ENSG00000272989.1 lincRNA LINC02012 2 OTTHUMG00000186169.1 +45961 chr3 HAVANA gene 197509783 197573323 9114.0 - 0 ENSG00000161267.11 protein_coding BDH1 1 OTTHUMG00000155478.11 +45962 chr3 HAVANA gene 197580344 197580629 286.0 - 0 ENSG00000213519.2 processed_pseudogene AC132008.1 1 OTTHUMG00000155480.1 pseudo_consens,overlapping_locus +45963 chr3 HAVANA gene 197578213 197627906 3502.0 - 0 ENSG00000214135.8 transcribed_unprocessed_pseudogene AC132008.2 2 OTTHUMG00000155479.1 overlapping_locus +45964 chr3 HAVANA gene 197634315 197635811 1497.0 + 0 ENSG00000249626.1 processed_pseudogene AC024560.2 1 OTTHUMG00000160226.1 pseudo_consens +45965 chr3 HAVANA gene 197645669 197646017 349.0 + 0 ENSG00000273308.1 lincRNA AC024560.3 2 OTTHUMG00000186170.1 +45966 chr3 HAVANA gene 197660565 197665757 1471.0 - 0 ENSG00000236833.1 lincRNA AC024560.1 2 OTTHUMG00000155477.1 +45967 chr3 ENSEMBL gene 197674496 197674576 81.0 - 0 ENSG00000284146.1 miRNA MIR922 3 +45968 chr3 HAVANA gene 197671393 197749727 8613.0 - 0 ENSG00000145016.15 protein_coding RUBCN 1 OTTHUMG00000155452.5 ncRNA_host +45969 chr3 HAVANA gene 197737179 197787596 8025.0 + 0 ENSG00000122068.12 protein_coding FYTTD1 1 OTTHUMG00000155453.11 +45970 chr3 HAVANA gene 197789700 197790369 670.0 + 0 ENSG00000273375.1 lincRNA AC055764.2 2 OTTHUMG00000186171.1 +45971 chr3 HAVANA gene 197830685 197831296 473.0 - 0 ENSG00000234136.1 antisense AC055764.1 2 OTTHUMG00000155409.1 +45972 chr3 HAVANA gene 197850400 197850954 555.0 - 0 ENSG00000234742.1 processed_pseudogene AC144530.1 1 OTTHUMG00000155432.1 pseudo_consens +45973 chr3 HAVANA gene 197791226 197888436 12639.0 + 0 ENSG00000186001.13 protein_coding LRCH3 2 OTTHUMG00000155378.4 +45974 chr3 ENSEMBL gene 197894507 197894613 107.0 + 0 ENSG00000199306.1 snRNA RNU6-858P 3 +45975 chr3 HAVANA gene 197949980 197956610 3109.0 + 0 ENSG00000182899.16 protein_coding RPL35A 2 OTTHUMG00000155386.6 +45976 chr3 HAVANA gene 197889075 197960142 7474.0 - 0 ENSG00000114473.13 protein_coding IQCG 1 OTTHUMG00000155408.2 +45977 chr3 ENSEMBL gene 197994601 197994709 109.0 + 0 ENSG00000201622.1 snRNA RNU6-621P 3 +45978 chr3 HAVANA gene 198038321 198039234 542.0 - 0 ENSG00000232832.1 antisense LMLN-AS1 2 OTTHUMG00000155374.1 +45979 chr3 HAVANA gene 197960200 198043720 8692.0 + 0 ENSG00000185621.11 protein_coding LMLN 2 OTTHUMG00000155375.2 ncRNA_host +45980 chr3 ENSEMBL gene 198071311 198071417 107.0 - 0 ENSG00000212297.1 snRNA RNU6-821P 3 +45981 chr3 HAVANA gene 198053522 198080720 3449.0 - 0 ENSG00000226435.10 transcribed_unprocessed_pseudogene ANKRD18DP 2 OTTHUMG00000150228.3 +45982 chr3 HAVANA gene 198110112 198111878 1155.0 + 0 ENSG00000232783.5 transcribed_unprocessed_pseudogene FRG2FP 2 OTTHUMG00000155373.1 +45983 chr3 HAVANA gene 198119721 198120778 1058.0 + 0 ENSG00000213113.3 unprocessed_pseudogene TUBB8P8 1 OTTHUMG00000155372.1 pseudo_consens +45984 chr3 HAVANA gene 198121479 198123232 775.0 - 0 ENSG00000236246.2 unprocessed_pseudogene AC073135.1 2 OTTHUMG00000155435.2 +45985 chr3 ENSEMBL gene 198196746 198196849 104.0 + 0 ENSG00000222792.1 snRNA RNU6-860P 3 +45986 chr3 HAVANA gene 198153287 198222513 7091.0 + 0 ENSG00000236438.7 transcribed_unprocessed_pseudogene FAM157A 1 OTTHUMG00000187506.3 pseudo_consens +45987 chr3 HAVANA gene 198223497 198226310 2729.0 - 0 ENSG00000230304.1 processed_pseudogene CICP6 1 OTTHUMG00000155429.1 pseudo_consens +45988 chr3 HAVANA gene 198228194 198228376 183.0 + 0 ENSG00000226008.1 unprocessed_pseudogene SEPT14P3 2 OTTHUMG00000155430.1 +45989 chr4 HAVANA gene 49096 50124 1029.0 - 0 ENSG00000248302.3 transcribed_processed_pseudogene BNIP3P41 1 OTTHUMG00000159940.3 pseudo_consens +45990 chr4 HAVANA gene 53285 88211 3933.0 + 0 ENSG00000272602.5 protein_coding ZNF595 2 OTTHUMG00000159865.5 +45991 chr4 HAVANA gene 105959 107114 1156.0 - 0 ENSG00000250238.1 processed_pseudogene AC253576.1 1 OTTHUMG00000159898.1 pseudo_consens +45992 chr4 HAVANA gene 149738 150317 580.0 + 0 ENSG00000275426.1 sense_intronic AC253576.2 2 OTTHUMG00000188626.1 +45993 chr4 HAVANA gene 124480 202303 4921.0 + 0 ENSG00000250312.7 protein_coding ZNF718 2 OTTHUMG00000159873.9 +45994 chr4 HAVANA gene 201409 205009 950.0 - 0 ENSG00000250892.1 unprocessed_pseudogene AC108475.1 1 OTTHUMG00000159897.1 pseudo_consens +45995 chr4 HAVANA gene 212610 255985 2804.0 + 0 ENSG00000198155.5 transcribed_unprocessed_pseudogene ZNF876P 2 OTTHUMG00000159874.2 +45996 chr4 HAVANA gene 268982 269531 550.0 - 0 ENSG00000251188.1 processed_pseudogene AC079140.3 2 OTTHUMG00000159939.1 +45997 chr4 HAVANA gene 269866 270175 310.0 - 0 ENSG00000251689.1 processed_pseudogene AC079140.5 2 OTTHUMG00000159932.1 +45998 chr4 HAVANA gene 270675 305321 2193.0 - 0 ENSG00000186777.11 protein_coding ZNF732 1 OTTHUMG00000159883.2 +45999 chr4 HAVANA gene 336258 336786 529.0 - 0 ENSG00000251535.1 processed_pseudogene AC079140.4 1 OTTHUMG00000159938.1 pseudo_consens +46000 chr4 HAVANA gene 338097 338583 487.0 - 0 ENSG00000248564.1 processed_pseudogene AC079140.1 2 OTTHUMG00000159934.1 +46001 chr4 HAVANA gene 342821 342962 142.0 - 0 ENSG00000250321.1 processed_pseudogene AC079140.2 1 OTTHUMG00000159937.1 pseudo_consens +46002 chr4 ENSEMBL gene 350157 350252 96.0 + 0 ENSG00000207642.1 miRNA MIR571 3 +46003 chr4 HAVANA gene 337814 384864 5744.0 + 0 ENSG00000131127.13 protein_coding ZNF141 2 OTTHUMG00000159852.5 ncRNA_host +46004 chr4 HAVANA gene 393534 393658 125.0 + 0 ENSG00000249025.1 processed_pseudogene ZNF519P4 2 OTTHUMG00000159864.1 +46005 chr4 HAVANA gene 416118 416537 420.0 - 0 ENSG00000272885.1 lincRNA AC092574.1 2 OTTHUMG00000186191.1 +46006 chr4 HAVANA gene 386174 454070 753.0 + 0 ENSG00000281016.1 antisense AC092574.2 2 OTTHUMG00000189757.1 +46007 chr4 HAVANA gene 425435 474129 2790.0 - 0 ENSG00000251595.7 transcribed_processed_pseudogene ABCA11P 1 OTTHUMG00000159884.1 pseudo_consens,overlapping_locus +46008 chr4 HAVANA gene 425815 499156 6390.0 - 0 ENSG00000182903.15 protein_coding ZNF721 2 OTTHUMG00000112450.6 overlapping_locus +46009 chr4 HAVANA gene 499210 540196 10895.0 + 0 ENSG00000174227.15 protein_coding PIGG 1 OTTHUMG00000112457.8 +46010 chr4 HAVANA gene 573880 576300 2421.0 - 0 ENSG00000273238.2 protein_coding TMEM271 2 OTTHUMG00000192218.1 +46011 chr4 HAVANA gene 577168 584866 1854.0 + 0 ENSG00000283183.1 lincRNA AC116565.1 2 OTTHUMG00000191712.1 +46012 chr4 HAVANA gene 652850 656213 2353.0 - 0 ENSG00000242686.4 antisense AC107464.1 1 OTTHUMG00000159908.4 +46013 chr4 HAVANA gene 661209 661945 737.0 - 0 ENSG00000272927.1 antisense AC107464.3 2 OTTHUMG00000186193.1 +46014 chr4 HAVANA gene 625584 670782 5086.0 + 0 ENSG00000133256.12 protein_coding PDE6B 1 OTTHUMG00000159909.4 +46015 chr4 HAVANA gene 672436 674338 940.0 - 0 ENSG00000169020.9 protein_coding ATP5ME 2 OTTHUMG00000086929.2 +46016 chr4 HAVANA gene 673580 682033 4305.0 + 0 ENSG00000215375.6 protein_coding MYL5 2 OTTHUMG00000159971.3 +46017 chr4 HAVANA gene 681829 689441 2644.0 - 0 ENSG00000169026.12 protein_coding SLC49A3 1 OTTHUMG00000119001.9 +46018 chr4 HAVANA gene 722275 724034 569.0 - 0 ENSG00000248416.1 antisense AC107464.2 1 OTTHUMG00000159970.1 +46019 chr4 HAVANA gene 757022 757740 719.0 - 0 ENSG00000272588.1 antisense AC139887.4 2 OTTHUMG00000186219.1 +46020 chr4 HAVANA gene 764487 765074 286.0 - 0 ENSG00000233799.1 antisense AC139887.1 1 OTTHUMG00000150498.1 overlapping_locus +46021 chr4 HAVANA gene 705748 770640 7425.0 + 0 ENSG00000185619.18 protein_coding PCGF3 2 OTTHUMG00000119000.3 +46022 chr4 HAVANA gene 762387 781849 1575.0 - 0 ENSG00000249592.5 antisense AC139887.2 1 OTTHUMG00000160004.1 overlapping_locus +46023 chr4 HAVANA gene 784957 826198 2418.0 - 0 ENSG00000168993.14 protein_coding CPLX1 1 OTTHUMG00000160005.2 +46024 chr4 HAVANA gene 836512 837224 713.0 - 0 ENSG00000260262.1 lincRNA AC139887.3 2 OTTHUMG00000176263.1 +46025 chr4 HAVANA gene 849276 932373 15155.0 - 0 ENSG00000178950.16 protein_coding GAK 1 OTTHUMG00000088301.5 +46026 chr4 HAVANA gene 932387 958656 3623.0 + 0 ENSG00000127419.16 protein_coding TMEM175 1 OTTHUMG00000118996.5 +46027 chr4 HAVANA gene 958887 986895 4970.0 - 0 ENSG00000145214.13 protein_coding DGKQ 1 OTTHUMG00000088629.4 overlapping_locus +46028 chr4 HAVANA gene 979073 993440 4293.0 - 0 ENSG00000145217.13 protein_coding SLC26A1 1 OTTHUMG00000160003.1 overlapping_locus +46029 chr4 HAVANA gene 986997 1004506 4000.0 + 0 ENSG00000127415.12 protein_coding IDUA 1 OTTHUMG00000088901.4 +46030 chr4 HAVANA gene 1009936 1026897 4145.0 + 0 ENSG00000127418.14 protein_coding FGFRL1 2 OTTHUMG00000118998.3 +46031 chr4 HAVANA gene 1027678 1028972 272.0 + 0 ENSG00000250259.1 lincRNA AC019103.1 2 OTTHUMG00000160084.1 +46032 chr4 HAVANA gene 1100016 1101558 1204.0 - 0 ENSG00000251639.2 processed_pseudogene AC092535.2 1 OTTHUMG00000160085.3 pseudo_consens,overlapping_locus +46033 chr4 HAVANA gene 1056250 1113562 5003.0 - 0 ENSG00000178222.12 protein_coding RNF212 2 OTTHUMG00000118997.4 overlapping_locus +46034 chr4 ENSEMBL gene 1118884 1119013 130.0 + 0 ENSG00000212458.1 snoRNA RF00554 3 +46035 chr4 HAVANA gene 1113639 1132977 515.0 + 0 ENSG00000251652.1 antisense AC092535.3 1 OTTHUMG00000160168.1 ncRNA_host +46036 chr4 HAVANA gene 1151372 1153701 2165.0 + 0 ENSG00000227189.2 antisense AC092535.1 2 OTTHUMG00000118999.1 +46037 chr4 HAVANA gene 1115197 1153726 756.0 - 0 ENSG00000215367.10 transcribed_unitary_pseudogene TMED11P 2 OTTHUMG00000154635.3 +46038 chr4 HAVANA gene 1167778 1168174 397.0 + 0 ENSG00000273179.1 antisense AC092535.4 2 OTTHUMG00000186224.1 +46039 chr4 HAVANA gene 1166932 1208962 6013.0 - 0 ENSG00000159674.11 protein_coding SPON2 1 OTTHUMG00000089002.4 +46040 chr4 HAVANA gene 1210120 1218591 3886.0 + 0 ENSG00000280927.1 antisense CTBP1-AS 2 OTTHUMG00000189534.1 +46041 chr4 HAVANA gene 1211448 1249953 8361.0 - 0 ENSG00000159692.15 protein_coding CTBP1 1 OTTHUMG00000089259.9 +46042 chr4 HAVANA gene 1249300 1288291 7820.0 + 0 ENSG00000196810.4 antisense CTBP1-DT 1 OTTHUMG00000160166.2 +46043 chr4 HAVANA gene 1289851 1340147 9857.0 + 0 ENSG00000090316.15 protein_coding MAEA 1 OTTHUMG00000160169.7 +46044 chr4 HAVANA gene 1356581 1358075 527.0 + 0 ENSG00000254094.1 sense_intronic AC078852.2 2 OTTHUMG00000163525.1 overlapping_locus +46045 chr4 HAVANA gene 1358479 1359461 441.0 + 0 ENSG00000253399.1 sense_intronic AC078852.1 2 OTTHUMG00000163526.1 overlapping_locus +46046 chr4 HAVANA gene 1347266 1395992 15773.0 + 0 ENSG00000163945.16 protein_coding UVSSA 1 OTTHUMG00000160167.2 overlapping_locus +46047 chr4 HAVANA gene 1402932 1406331 1236.0 - 0 ENSG00000235608.1 protein_coding NKX1-1 2 OTTHUMG00000160165.3 +46048 chr4 HAVANA gene 1550284 1550572 289.0 + 0 ENSG00000272783.1 lincRNA AC147067.2 2 OTTHUMG00000186229.1 +46049 chr4 HAVANA gene 1574062 1580253 579.0 - 0 ENSG00000244459.2 lincRNA AC147067.1 2 OTTHUMG00000158335.3 +46050 chr4 ENSEMBL gene 1683420 1683529 110.0 - 0 ENSG00000207009.1 misc_RNA RF00019 3 +46051 chr4 HAVANA gene 1617915 1684302 4239.0 - 0 ENSG00000174137.12 protein_coding FAM53A 1 OTTHUMG00000159855.6 ncRNA_host +46052 chr4 HAVANA gene 1692800 1712555 2026.0 - 0 ENSG00000163950.12 protein_coding SLBP 1 OTTHUMG00000089349.6 +46053 chr4 HAVANA gene 1712821 1713622 802.0 + 0 ENSG00000270195.1 lincRNA AC016773.1 2 OTTHUMG00000185171.1 +46054 chr4 HAVANA gene 1715952 1721358 3442.0 - 0 ENSG00000168936.10 protein_coding TMEM129 1 OTTHUMG00000121150.3 +46055 chr4 HAVANA gene 1721490 1745176 6528.0 + 0 ENSG00000013810.18 protein_coding TACC3 1 OTTHUMG00000089535.20 +46056 chr4 HAVANA gene 1793293 1808872 4848.0 + 0 ENSG00000068078.18 protein_coding FGFR3 1 OTTHUMG00000121148.7 +46057 chr4 HAVANA gene 1811479 1856247 8184.0 - 0 ENSG00000168924.14 protein_coding LETM1 2 OTTHUMG00000121149.4 +46058 chr4 ENSEMBL gene 1974636 1974760 125.0 + 0 ENSG00000249784.1 scaRNA SCARNA22 3 +46059 chr4 HAVANA gene 1871424 1982207 19776.0 + 0 ENSG00000109685.17 protein_coding NSD2 2 OTTHUMG00000121147.14 ncRNA_host,overlapping_locus +46060 chr4 ENSEMBL gene 1986384 1986477 94.0 - 0 ENSG00000284587.1 miRNA MIR943 3 +46061 chr4 HAVANA gene 1982714 2041903 5935.0 - 0 ENSG00000185049.14 protein_coding NELFA 1 OTTHUMG00000089967.23 ncRNA_host +46062 chr4 HAVANA gene 2041993 2043970 540.0 + 0 ENSG00000243449.6 protein_coding C4orf48 2 OTTHUMG00000154503.2 +46063 chr4 HAVANA gene 2059512 2069089 5871.0 + 0 ENSG00000185818.7 protein_coding NAT8L 2 OTTHUMG00000121151.3 +46064 chr4 HAVANA gene 2088718 2090617 1900.0 - 0 ENSG00000249006.1 processed_pseudogene AL136360.1 1 OTTHUMG00000159800.1 pseudo_consens,overlapping_locus +46065 chr4 HAVANA gene 2139673 2141058 581.0 + 0 ENSG00000250623.1 antisense AL136360.2 1 OTTHUMG00000159799.1 +46066 chr4 HAVANA gene 2234251 2234499 249.0 + 0 ENSG00000249047.2 processed_pseudogene COX6B1P5 1 OTTHUMG00000159816.2 pseudo_consens +46067 chr4 HAVANA gene 2071918 2242121 7721.0 - 0 ENSG00000130997.16 protein_coding POLN 2 OTTHUMG00000090081.5 overlapping_locus +46068 chr4 HAVANA gene 2227464 2242164 7067.0 - 0 ENSG00000214367.7 protein_coding HAUS3 2 OTTHUMG00000159805.15 overlapping_locus +46069 chr4 ENSEMBL gene 2250077 2250156 80.0 - 0 ENSG00000284276.1 miRNA MIR4800 3 +46070 chr4 HAVANA gene 2247432 2262294 7058.0 - 0 ENSG00000123933.16 protein_coding MXD4 2 OTTHUMG00000090243.5 ncRNA_host +46071 chr4 ENSEMBL gene 2316197 2316506 310.0 - 0 ENSG00000239247.3 misc_RNA RN7SL589P 3 +46072 chr4 HAVANA gene 2295584 2319089 563.0 + 0 ENSG00000251148.1 antisense AL158068.2 2 OTTHUMG00000160291.1 +46073 chr4 HAVANA gene 2324467 2325082 616.0 + 0 ENSG00000249077.1 processed_pseudogene AL158068.1 1 OTTHUMG00000160290.1 pseudo_consens +46074 chr4 HAVANA gene 2269582 2418663 9624.0 - 0 ENSG00000159733.13 protein_coding ZFYVE28 1 OTTHUMG00000160292.5 ncRNA_host +46075 chr4 HAVANA gene 2418974 2462942 5198.0 + 0 ENSG00000206113.10 protein_coding CFAP99 2 OTTHUMG00000160515.7 overlapping_locus +46076 chr4 HAVANA gene 2463797 2464124 220.0 + 0 ENSG00000248399.1 sense_intronic AL645924.1 2 OTTHUMG00000160511.2 overlapping_locus +46077 chr4 HAVANA gene 2505081 2506279 900.0 - 0 ENSG00000251229.1 processed_pseudogene AL645924.2 1 OTTHUMG00000160514.1 pseudo_consens +46078 chr4 HAVANA gene 2607870 2608146 277.0 - 0 ENSG00000248155.1 unprocessed_pseudogene CR545473.1 2 OTTHUMG00000160513.1 +46079 chr4 ENSEMBL gene 2615124 2615224 101.0 - 0 ENSG00000206738.1 misc_RNA RF00019 3 +46080 chr4 HAVANA gene 2462220 2625320 7270.0 + 0 ENSG00000063978.15 protein_coding RNF4 1 OTTHUMG00000160516.13 overlapping_locus +46081 chr4 HAVANA gene 2536631 2732565 6959.0 + 0 ENSG00000125386.15 protein_coding FAM193A 1 OTTHUMG00000160512.4 overlapping_locus +46082 chr4 HAVANA gene 2741648 2756376 2686.0 - 0 ENSG00000168884.14 protein_coding TNIP2 2 OTTHUMG00000090267.6 +46083 chr4 HAVANA gene 2793023 2841098 13968.0 + 0 ENSG00000087266.15 protein_coding SH3BP2 2 OTTHUMG00000160801.14 +46084 chr4 HAVANA gene 2843857 2930076 13106.0 + 0 ENSG00000087274.16 protein_coding ADD1 1 OTTHUMG00000122080.22 +46085 chr4 HAVANA gene 2930561 2934859 3159.0 - 0 ENSG00000109736.14 protein_coding MFSD10 2 OTTHUMG00000122081.7 +46086 chr4 HAVANA gene 2934899 2961738 7195.0 + 0 ENSG00000249673.6 antisense NOP14-AS1 1 OTTHUMG00000160136.3 +46087 chr4 HAVANA gene 2937933 2963385 3538.0 - 0 ENSG00000087269.15 protein_coding NOP14 1 OTTHUMG00000159911.4 +46088 chr4 HAVANA gene 2963608 3040747 4686.0 + 0 ENSG00000125388.19 protein_coding GRK4 2 OTTHUMG00000159914.4 +46089 chr4 ENSEMBL gene 3044101 3044207 107.0 + 0 ENSG00000199335.1 snRNA RNU6-204P 3 +46090 chr4 ENSEMBL gene 3063472 3063701 230.0 + 0 ENSG00000278778.1 misc_RNA RF02134 3 +46091 chr4 ENSEMBL gene 3069977 3070151 175.0 + 0 ENSG00000274693.1 misc_RNA RF02135 3 +46092 chr4 HAVANA gene 3063471 3074514 515.0 - 0 ENSG00000251075.1 antisense HTT-AS 2 OTTHUMG00000159915.4 +46093 chr4 HAVANA gene 3041422 3243960 19796.0 + 0 ENSG00000197386.12 protein_coding HTT 2 OTTHUMG00000159916.7 ncRNA_host +46094 chr4 HAVANA gene 3244369 3271738 7553.0 + 0 ENSG00000188981.10 protein_coding MSANTD1 1 OTTHUMG00000159977.4 +46095 chr4 HAVANA gene 3312512 3313058 547.0 + 0 ENSG00000248840.2 transcribed_processed_pseudogene AL645949.1 1 OTTHUMG00000159840.2 pseudo_consens,overlapping_locus +46096 chr4 HAVANA gene 3323977 3324762 786.0 - 0 ENSG00000248843.1 processed_pseudogene AL645949.2 1 OTTHUMG00000157427.1 pseudo_consens +46097 chr4 HAVANA gene 3293028 3439913 13536.0 + 0 ENSG00000159788.19 protein_coding RGS12 2 OTTHUMG00000090277.14 overlapping_locus +46098 chr4 HAVANA gene 3441887 3449495 2847.0 + 0 ENSG00000109758.8 protein_coding HGFAC 2 OTTHUMG00000090281.7 +46099 chr4 HAVANA gene 3463311 3501473 4031.0 + 0 ENSG00000175920.17 protein_coding DOK7 1 OTTHUMG00000122087.7 +46100 chr4 HAVANA gene 3503597 3532559 11944.0 - 0 ENSG00000163956.11 protein_coding LRPAP1 2 OTTHUMG00000090299.7 +46101 chr4 HAVANA gene 3544555 3548796 933.0 + 0 ENSG00000270090.5 lincRNA AL590235.1 2 OTTHUMG00000184079.1 +46102 chr4 HAVANA gene 3576869 3590711 2087.0 + 0 ENSG00000216560.4 processed_transcript LINC00955 1 OTTHUMG00000159817.6 +46103 chr4 HAVANA gene 3633029 3633975 466.0 + 0 ENSG00000250681.1 lincRNA AL121796.1 1 OTTHUMG00000159993.1 +46104 chr4 HAVANA gene 3673593 3677855 1033.0 - 0 ENSG00000250632.1 lincRNA LINC02171 1 OTTHUMG00000159968.1 +46105 chr4 HAVANA gene 3758748 3763390 4525.0 - 0 ENSG00000250986.1 lincRNA LINC02600 2 OTTHUMG00000159831.5 +46106 chr4 HAVANA gene 3766348 3768526 2179.0 + 0 ENSG00000184160.7 protein_coding ADRA2C 2 OTTHUMG00000159830.1 retrogene +46107 chr4 HAVANA gene 3889356 3890249 894.0 - 0 ENSG00000251166.1 unprocessed_pseudogene OR7E163P 1 OTTHUMG00000160266.1 pseudo_consens +46108 chr4 HAVANA gene 3901566 3902594 1029.0 - 0 ENSG00000234386.4 unprocessed_pseudogene OR7E162P 2 OTTHUMG00000160265.2 +46109 chr4 HAVANA gene 3910283 3910604 322.0 + 0 ENSG00000249522.1 processed_pseudogene AC147876.1 2 OTTHUMG00000159994.1 +46110 chr4 HAVANA gene 3915187 3924274 530.0 - 0 ENSG00000271977.1 transcribed_unprocessed_pseudogene AC226119.2 2 OTTHUMG00000185330.1 overlapping_locus +46111 chr4 HAVANA gene 3935447 3942519 768.0 + 0 ENSG00000251271.3 unprocessed_pseudogene ALG1L7P 2 OTTHUMG00000159841.2 +46112 chr4 HAVANA gene 3941760 3955419 3476.0 - 0 ENSG00000251669.5 transcribed_unprocessed_pseudogene FAM86EP 1 OTTHUMG00000159867.7 overlapping_locus +46113 chr4 HAVANA gene 3915183 3955419 682.0 - 0 ENSG00000253917.4 processed_transcript AC226119.1 2 OTTHUMG00000160213.2 overlapping_locus +46114 chr4 HAVANA gene 3967034 3967660 627.0 - 0 ENSG00000250476.1 processed_pseudogene ENPP7P9 2 OTTHUMG00000160181.1 +46115 chr4 HAVANA gene 4076711 4077491 781.0 - 0 ENSG00000243894.1 processed_pseudogene AC116562.1 1 OTTHUMG00000157429.1 pseudo_consens +46116 chr4 HAVANA gene 4086638 4086814 177.0 + 0 ENSG00000250940.1 processed_pseudogene AC116562.3 1 OTTHUMG00000159972.1 pseudo_consens +46117 chr4 HAVANA gene 4048211 4107583 2276.0 - 0 ENSG00000284727.1 transcribed_unprocessed_pseudogene AC116562.4 2 OTTHUMG00000192244.1 +46118 chr4 HAVANA gene 4117925 4118284 360.0 - 0 ENSG00000248669.1 processed_pseudogene AC116562.2 1 OTTHUMG00000159871.2 pseudo_consens +46119 chr4 HAVANA gene 4126659 4127569 911.0 - 0 ENSG00000198787.5 unprocessed_pseudogene OR4D12P 1 OTTHUMG00000185806.1 pseudo_consens +46120 chr4 HAVANA gene 4143458 4150421 747.0 - 0 ENSG00000250381.1 unprocessed_pseudogene UNC93B4 2 OTTHUMG00000159866.2 +46121 chr4 HAVANA gene 4156522 4157443 922.0 - 0 ENSG00000250710.3 unprocessed_pseudogene OR7E99P 1 OTTHUMG00000159868.2 pseudo_consens +46122 chr4 HAVANA gene 4174319 4175238 920.0 - 0 ENSG00000249844.1 unprocessed_pseudogene OR7E43P 2 OTTHUMG00000159869.2 +46123 chr4 HAVANA gene 4188803 4226889 1864.0 - 0 ENSG00000163982.5 protein_coding OTOP1 2 OTTHUMG00000090301.3 +46124 chr4 HAVANA gene 4235542 4248212 1737.0 - 0 ENSG00000132406.11 protein_coding TMEM128 2 OTTHUMG00000125475.2 +46125 chr4 HAVANA gene 4267701 4290169 2319.0 - 0 ENSG00000145220.13 protein_coding LYAR 2 OTTHUMG00000125477.19 +46126 chr4 HAVANA gene 4290251 4321786 2889.0 + 0 ENSG00000168826.15 protein_coding ZBTB49 2 OTTHUMG00000090325.7 +46127 chr4 HAVANA gene 4321962 4334182 1416.0 + 0 ENSG00000248516.1 lincRNA AC105415.1 2 OTTHUMG00000160206.1 +46128 chr4 HAVANA gene 4348140 4419058 4355.0 + 0 ENSG00000168824.14 protein_coding NSG1 1 OTTHUMG00000160002.3 +46129 chr4 HAVANA gene 4476121 4481700 542.0 - 0 ENSG00000248221.1 sense_intronic STX18-IT1 2 OTTHUMG00000159966.1 overlapping_locus +46130 chr4 HAVANA gene 4507078 4507777 584.0 + 0 ENSG00000237170.3 processed_pseudogene RPS7P15 1 OTTHUMG00000159924.1 pseudo_consens +46131 chr4 HAVANA gene 4415742 4542346 5332.0 - 0 ENSG00000168818.9 protein_coding STX18 1 OTTHUMG00000090331.4 overlapping_locus +46132 chr4 HAVANA gene 4542131 4710938 6107.0 + 0 ENSG00000247708.7 antisense STX18-AS1 2 OTTHUMG00000159923.2 +46133 chr4 HAVANA gene 4820405 4821452 1048.0 + 0 ENSG00000280310.1 TEC AC092437.1 2 OTTHUMG00000176290.1 +46134 chr4 HAVANA gene 4844437 4850827 527.0 + 0 ENSG00000273396.1 lincRNA LINC01396 2 OTTHUMG00000186235.2 +46135 chr4 HAVANA gene 4859666 4863936 2120.0 + 0 ENSG00000163132.6 protein_coding MSX1 2 OTTHUMG00000090335.4 +46136 chr4 HAVANA gene 4894182 4895173 992.0 - 0 ENSG00000251587.1 processed_pseudogene LDHAP1 1 OTTHUMG00000159967.2 pseudo_consens +46137 chr4 ENSEMBL gene 4920770 4921064 295.0 - 0 ENSG00000200761.1 misc_RNA RN7SKP113 3 +46138 chr4 HAVANA gene 5014586 5019472 1003.0 - 0 ENSG00000170891.10 protein_coding CYTL1 1 OTTHUMG00000125479.3 +46139 chr4 ENSEMBL gene 5426885 5426984 100.0 - 0 ENSG00000252266.1 misc_RNA RF00019 3 +46140 chr4 ENSEMBL gene 5458581 5458881 301.0 - 0 ENSG00000201496.1 misc_RNA RN7SKP275 3 +46141 chr4 HAVANA gene 5051442 5500998 5324.0 + 0 ENSG00000152953.12 protein_coding STK32B 2 OTTHUMG00000090423.8 +46142 chr4 HAVANA gene 5524569 5527801 1164.0 + 0 ENSG00000082929.8 processed_transcript LINC01587 2 OTTHUMG00000125492.3 +46143 chr4 HAVANA gene 5542772 5709548 5509.0 - 0 ENSG00000173040.12 protein_coding EVC2 2 OTTHUMG00000125493.7 +46144 chr4 HAVANA gene 5711197 5814305 7148.0 + 0 ENSG00000072840.12 protein_coding EVC 1 OTTHUMG00000090427.3 +46145 chr4 HAVANA gene 5748084 5893058 5823.0 - 0 ENSG00000072832.14 protein_coding CRMP1 1 OTTHUMG00000125489.2 +46146 chr4 ENSEMBL gene 5923275 5923328 54.0 - 0 ENSG00000263631.1 miRNA MIR378D1 3 +46147 chr4 HAVANA gene 6064977 6070162 138.0 - 0 ENSG00000284684.1 protein_coding AC092442.1 2 OTTHUMG00000125491.11 overlapping_locus +46148 chr4 HAVANA gene 5897373 6200555 20673.0 - 0 ENSG00000181215.15 protein_coding C4orf50 2 OTTHUMG00000192330.3 ncRNA_host,overlapping_locus +46149 chr4 HAVANA gene 6026203 6200591 3808.0 - 0 ENSG00000152969.19 protein_coding JAKMIP1 2 OTTHUMG00000193376.1 +46150 chr4 HAVANA gene 6202328 6206649 4121.0 + 0 ENSG00000251408.1 lincRNA AC113615.1 2 OTTHUMG00000160217.1 overlapping_locus +46151 chr4 HAVANA gene 6200733 6239937 5643.0 + 0 ENSG00000249896.2 transcribed_unprocessed_pseudogene LINC02495 2 OTTHUMG00000160216.2 overlapping_locus +46152 chr4 HAVANA gene 6269849 6303265 4513.0 + 0 ENSG00000109501.13 protein_coding WFS1 2 OTTHUMG00000090431.4 +46153 chr4 HAVANA gene 6320578 6563600 9198.0 - 0 ENSG00000074211.13 protein_coding PPP2R2C 2 OTTHUMG00000090445.6 +46154 chr4 HAVANA gene 6575175 6623362 8898.0 + 0 ENSG00000013288.8 protein_coding MAN2B2 2 OTTHUMG00000160073.3 +46155 chr4 HAVANA gene 6640091 6642745 2655.0 + 0 ENSG00000179010.14 protein_coding MRFAP1 2 OTTHUMG00000125504.3 +46156 chr4 HAVANA gene 6658690 6658981 292.0 + 0 ENSG00000284847.1 unprocessed_pseudogene AC093323.4 2 OTTHUMG00000192529.1 +46157 chr4 HAVANA gene 6648696 6673896 1167.0 - 0 ENSG00000251580.2 lincRNA LINC02482 2 OTTHUMG00000162381.2 +46158 chr4 HAVANA gene 6663396 6676755 3599.0 + 0 ENSG00000170846.17 protein_coding AC093323.1 2 OTTHUMG00000125505.7 +46159 chr4 HAVANA gene 6687448 6690519 1821.0 - 0 ENSG00000246526.2 lincRNA LINC002481 2 OTTHUMG00000160124.2 +46160 chr4 HAVANA gene 6691995 6692970 976.0 - 0 ENSG00000279859.2 TEC AC093323.2 2 OTTHUMG00000191424.1 +46161 chr4 HAVANA gene 6693069 6697170 1280.0 + 0 ENSG00000163993.6 protein_coding S100P 2 OTTHUMG00000090491.4 +46162 chr4 HAVANA gene 6697861 6698809 949.0 - 0 ENSG00000282742.1 TEC AC093323.3 2 OTTHUMG00000191425.1 +46163 chr4 HAVANA gene 6707701 6709880 2180.0 - 0 ENSG00000178988.10 protein_coding MRFAP1L1 2 OTTHUMG00000125507.3 +46164 chr4 HAVANA gene 6716055 6717671 1617.0 + 0 ENSG00000186222.4 protein_coding BLOC1S4 2 OTTHUMG00000125510.1 retrogene +46165 chr4 HAVANA gene 6781375 6884170 8499.0 + 0 ENSG00000170871.11 protein_coding KIAA0232 2 OTTHUMG00000160072.2 +46166 chr4 ENSEMBL gene 6997012 6997328 317.0 + 0 ENSG00000202392.1 misc_RNA RN7SKP292 3 +46167 chr4 HAVANA gene 6995341 6998958 591.0 + 0 ENSG00000187904.3 sense_overlapping AC097382.1 2 OTTHUMG00000152568.1 ncRNA_host,overlapping_locus +46168 chr4 HAVANA gene 6909242 7033118 6241.0 + 0 ENSG00000132405.18 protein_coding TBC1D14 1 OTTHUMG00000090493.6 ncRNA_host,overlapping_locus +46169 chr4 HAVANA gene 7040849 7042939 2091.0 - 0 ENSG00000173013.5 protein_coding CCDC96 2 OTTHUMG00000125511.1 overlapping_locus +46170 chr4 HAVANA gene 7030554 7046231 4300.0 - 0 ENSG00000245748.1 antisense AC097382.2 2 OTTHUMG00000159982.1 overlapping_locus +46171 chr4 HAVANA gene 7041899 7057952 5776.0 + 0 ENSG00000173011.11 protein_coding TADA2B 2 OTTHUMG00000159983.4 +46172 chr4 HAVANA gene 7058906 7068197 4177.0 - 0 ENSG00000109519.12 protein_coding GRPEL1 2 OTTHUMG00000090495.2 +46173 chr4 HAVANA gene 7094571 7103385 3763.0 - 0 ENSG00000245468.3 lincRNA LINC02447 2 OTTHUMG00000159980.1 +46174 chr4 ENSEMBL gene 7112088 7112399 312.0 - 0 ENSG00000200867.1 misc_RNA RN7SKP36 3 +46175 chr4 ENSEMBL gene 7310450 7310524 75.0 + 0 ENSG00000264658.1 miRNA MIR4798 3 +46176 chr4 HAVANA gene 7430294 7434973 4680.0 - 0 ENSG00000178597.6 protein_coding PSAPL1 2 OTTHUMG00000160006.2 retrogene +46177 chr4 ENSEMBL gene 7460028 7460118 91.0 + 0 ENSG00000266690.1 miRNA MIR4274 3 +46178 chr4 HAVANA gene 7192538 7742836 6317.0 + 0 ENSG00000184985.16 protein_coding SORCS2 2 OTTHUMG00000159981.4 ncRNA_host +46179 chr4 HAVANA gene 7754090 7778928 6795.0 + 0 ENSG00000272620.1 antisense AFAP1-AS1 2 OTTHUMG00000186238.1 +46180 chr4 HAVANA gene 7758714 7939926 10036.0 - 0 ENSG00000196526.10 protein_coding AFAP1 2 OTTHUMG00000125515.5 +46181 chr4 HAVANA gene 7939001 7940296 1296.0 + 0 ENSG00000228919.5 lincRNA AC097381.1 2 OTTHUMG00000043201.5 +46182 chr4 ENSEMBL gene 8005301 8005381 81.0 - 0 ENSG00000207807.1 miRNA MIR95 3 +46183 chr4 HAVANA gene 8022665 8023126 462.0 + 0 ENSG00000273267.1 antisense AC097381.3 2 OTTHUMG00000186243.1 +46184 chr4 HAVANA gene 8066528 8067724 859.0 + 0 ENSG00000251460.1 antisense AC097381.2 2 OTTHUMG00000160933.1 +46185 chr4 HAVANA gene 7965310 8158832 6049.0 - 0 ENSG00000163995.19 protein_coding ABLIM2 2 OTTHUMG00000057427.25 ncRNA_host +46186 chr4 HAVANA gene 8174421 8174999 579.0 + 0 ENSG00000250471.2 processed_pseudogene GMPSP1 1 OTTHUMG00000160021.2 pseudo_consens +46187 chr4 HAVANA gene 8182072 8241803 10593.0 + 0 ENSG00000125089.16 protein_coding SH3TC1 1 OTTHUMG00000160934.6 +46188 chr4 HAVANA gene 8269765 8307111 3321.0 + 0 ENSG00000170801.9 protein_coding HTRA3 2 OTTHUMG00000090561.5 +46189 chr4 HAVANA gene 8320117 8327142 1805.0 + 0 ENSG00000249145.2 lincRNA LINC02517 1 OTTHUMG00000160052.3 +46190 chr4 HAVANA gene 8355090 8358338 3249.0 - 0 ENSG00000251615.3 lincRNA AC104825.1 2 OTTHUMG00000160053.5 +46191 chr4 ENSEMBL gene 8393015 8393124 110.0 + 0 ENSG00000202054.1 rRNA_pseudogene RNA5SP152 3 +46192 chr4 HAVANA gene 8366282 8440723 3846.0 - 0 ENSG00000087008.15 protein_coding ACOX3 2 OTTHUMG00000090509.21 +46193 chr4 HAVANA gene 8453410 8454942 664.0 - 0 ENSG00000251186.1 antisense AC105345.2 2 OTTHUMG00000128484.20 +46194 chr4 HAVANA gene 8436140 8493531 7724.0 + 0 ENSG00000155275.18 protein_coding TRMT44 1 OTTHUMG00000160935.4 overlapping_locus +46195 chr4 HAVANA gene 8482270 8512610 3374.0 + 0 ENSG00000205959.3 lincRNA AC105345.1 2 OTTHUMG00000160092.3 overlapping_locus +46196 chr4 HAVANA gene 8592660 8619759 3447.0 + 0 ENSG00000109625.18 protein_coding CPZ 1 OTTHUMG00000090513.13 overlapping_locus +46197 chr4 HAVANA gene 8558725 8619761 8362.0 + 0 ENSG00000155269.11 protein_coding GPR78 2 OTTHUMG00000128483.10 overlapping_locus +46198 chr4 HAVANA gene 8745397 8746033 464.0 - 0 ENSG00000250915.1 lincRNA AC209005.1 2 OTTHUMG00000161596.1 +46199 chr4 HAVANA gene 8858715 8860827 562.0 - 0 ENSG00000258507.1 sense_intronic AC116612.1 2 OTTHUMG00000170901.1 overlapping_locus +46200 chr4 HAVANA gene 8846076 8871817 2144.0 - 0 ENSG00000215612.7 protein_coding HMX1 2 OTTHUMG00000160012.19 overlapping_locus +46201 chr4 HAVANA gene 8949630 8950559 930.0 + 0 ENSG00000197468.5 unprocessed_pseudogene AC073648.1 1 OTTHUMG00000160093.1 pseudo_consens +46202 chr4 HAVANA gene 8959628 8963981 705.0 + 0 ENSG00000249272.1 unprocessed_pseudogene UNC93B8 2 OTTHUMG00000160098.1 +46203 chr4 HAVANA gene 8981436 8982360 925.0 + 0 ENSG00000250804.1 unprocessed_pseudogene AC073648.3 1 OTTHUMG00000160096.1 pseudo_consens +46204 chr4 HAVANA gene 8990455 8990806 352.0 + 0 ENSG00000249347.1 processed_pseudogene AC073648.2 1 OTTHUMG00000160094.1 pseudo_consens +46205 chr4 HAVANA gene 9000841 9001058 218.0 + 0 ENSG00000284636.1 unprocessed_pseudogene AC073648.6 2 OTTHUMG00000192245.1 +46206 chr4 HAVANA gene 9020857 9021161 305.0 - 0 ENSG00000271057.1 processed_pseudogene AC073648.5 1 OTTHUMG00000184922.1 pseudo_consens +46207 chr4 HAVANA gene 9030286 9031066 781.0 + 0 ENSG00000251313.1 processed_pseudogene AC073648.4 1 OTTHUMG00000160095.1 pseudo_consens +46208 chr4 HAVANA gene 9051842 9052051 210.0 - 0 ENSG00000250342.1 processed_pseudogene SNRPCP16 2 OTTHUMG00000160097.1 +46209 chr4 HAVANA gene 9079023 9141608 933.0 + 0 ENSG00000249767.1 unprocessed_pseudogene ENPP7P10 2 OTTHUMG00000160099.1 +46210 chr4 HAVANA gene 9153296 9165451 987.0 + 0 ENSG00000163612.10 unprocessed_pseudogene FAM86KP 2 OTTHUMG00000160154.1 +46211 chr4 HAVANA gene 9166297 9170270 434.0 - 0 ENSG00000250268.3 unprocessed_pseudogene ALG1L14P 2 OTTHUMG00000160157.1 +46212 chr4 HAVANA gene 9170409 9176730 2492.0 + 0 ENSG00000229924.3 protein_coding FAM90A26 1 OTTHUMG00000160151.2 +46213 chr4 HAVANA gene 9210657 9212608 1680.0 + 0 ENSG00000231396.2 protein_coding USP17L10 2 OTTHUMG00000160160.2 retrogene +46214 chr4 HAVANA gene 9215405 9217356 1680.0 + 0 ENSG00000233136.2 protein_coding USP17L11 2 OTTHUMG00000160162.2 retrogene +46215 chr4 HAVANA gene 9220152 9221744 1593.0 + 0 ENSG00000227551.1 protein_coding USP17L12 2 OTTHUMG00000160148.2 retrogene +46216 chr4 HAVANA gene 9224896 9226847 1680.0 + 0 ENSG00000232399.3 protein_coding USP17L13 2 OTTHUMG00000160152.2 +46217 chr4 HAVANA gene 9229641 9231233 1593.0 + 0 ENSG00000249482.1 unprocessed_pseudogene USP17L14P 1 OTTHUMG00000160147.1 pseudo_consens +46218 chr4 HAVANA gene 9234385 9236334 1680.0 + 0 ENSG00000223569.6 protein_coding USP17L15 2 OTTHUMG00000160155.2 retrogene +46219 chr4 HAVANA gene 9239130 9240722 1593.0 + 0 ENSG00000250231.1 unprocessed_pseudogene USP17L16P 1 OTTHUMG00000160161.1 pseudo_consens +46220 chr4 HAVANA gene 9243879 9245830 1680.0 + 0 ENSG00000249104.2 protein_coding USP17L17 2 OTTHUMG00000160158.2 retrogene +46221 chr4 HAVANA gene 9248630 9250581 1680.0 + 0 ENSG00000250844.2 protein_coding USP17L18 2 OTTHUMG00000160153.2 retrogene +46222 chr4 HAVANA gene 9253378 9255329 1680.0 + 0 ENSG00000248920.2 protein_coding USP17L19 2 OTTHUMG00000160146.2 retrogene +46223 chr4 HAVANA gene 9258124 9260075 1680.0 + 0 ENSG00000250745.2 protein_coding USP17L20 2 OTTHUMG00000160150.2 retrogene +46224 chr4 HAVANA gene 9262872 9264823 1680.0 + 0 ENSG00000249811.2 protein_coding USP17L21 2 OTTHUMG00000160149.2 retrogene +46225 chr4 HAVANA gene 9267619 9269570 1680.0 + 0 ENSG00000248933.2 protein_coding USP17L22 2 OTTHUMG00000160159.2 retrogene +46226 chr4 HAVANA gene 9272364 9272914 551.0 + 0 ENSG00000250913.2 protein_coding USP17L23 2 OTTHUMG00000160156.3 retrogene +46227 chr4 HAVANA gene 9325165 9327116 1680.0 + 0 ENSG00000232264.4 protein_coding USP17L24 2 OTTHUMG00000160201.2 retrogene +46228 chr4 HAVANA gene 9329911 9331862 1680.0 + 0 ENSG00000230430.4 protein_coding USP17L25 2 OTTHUMG00000160192.2 retrogene +46229 chr4 HAVANA gene 9334658 9336609 1680.0 + 0 ENSG00000229579.4 protein_coding USP17L26 2 OTTHUMG00000160189.2 retrogene +46230 chr4 HAVANA gene 9339403 9340995 1593.0 + 0 ENSG00000227140.3 protein_coding USP17L5 2 OTTHUMG00000160182.2 retrogene +46231 chr4 HAVANA gene 9344148 9345740 1593.0 + 0 ENSG00000235780.3 protein_coding USP17L27 2 OTTHUMG00000160186.2 retrogene +46232 chr4 HAVANA gene 9348893 9350485 1593.0 + 0 ENSG00000231051.3 protein_coding USP17L28 2 OTTHUMG00000160191.2 retrogene +46233 chr4 HAVANA gene 9353638 9355230 1593.0 + 0 ENSG00000231637.3 protein_coding USP17L29 2 OTTHUMG00000160183.2 retrogene +46234 chr4 HAVANA gene 9358383 9359975 1593.0 + 0 ENSG00000251694.1 unprocessed_pseudogene USP17L9P 1 OTTHUMG00000160188.1 pseudo_consens +46235 chr4 HAVANA gene 9363129 9364721 1593.0 + 0 ENSG00000228856.3 protein_coding USP17L30 2 OTTHUMG00000160199.2 retrogene +46236 chr4 HAVANA gene 9367874 9369070 1197.0 + 0 ENSG00000205946.1 unprocessed_pseudogene USP17L6P 1 OTTHUMG00000160200.1 pseudo_consens +46237 chr4 HAVANA gene 9384017 9388983 901.0 - 0 ENSG00000219492.4 unprocessed_pseudogene AC116655.1 2 OTTHUMG00000160185.3 +46238 chr4 HAVANA gene 9399204 9403565 222.0 + 0 ENSG00000188438.4 unprocessed_pseudogene DEFB108F 2 OTTHUMG00000160193.1 +46239 chr4 ENSEMBL gene 9411178 9411253 76.0 - 0 ENSG00000252307.1 rRNA_pseudogene RNA5SP153 3 +46240 chr4 HAVANA gene 9422313 9429702 237.0 + 0 ENSG00000232773.2 unprocessed_pseudogene DEFB130D 2 OTTHUMG00000160190.1 +46241 chr4 HAVANA gene 9444534 9450514 213.0 + 0 ENSG00000186146.1 protein_coding DEFB131A 2 OTTHUMG00000160187.2 +46242 chr4 HAVANA gene 9459255 9460244 990.0 + 0 ENSG00000248364.1 unprocessed_pseudogene OR7E86P 1 OTTHUMG00000160198.2 pseudo_consens +46243 chr4 HAVANA gene 9468974 9469983 1010.0 + 0 ENSG00000284689.1 unprocessed_pseudogene OR7E84P 1 OTTHUMG00000192249.1 pseudo_consens +46244 chr4 HAVANA gene 9483718 9484702 985.0 + 0 ENSG00000250884.1 unprocessed_pseudogene OR7E85P 1 OTTHUMG00000160195.2 pseudo_consens +46245 chr4 HAVANA gene 9493736 9498066 705.0 + 0 ENSG00000251624.1 unprocessed_pseudogene UNC93B7 2 OTTHUMG00000160194.2 +46246 chr4 HAVANA gene 9512905 9513874 970.0 + 0 ENSG00000249866.1 unprocessed_pseudogene OR7E83P 1 OTTHUMG00000160184.2 pseudo_consens +46247 chr4 HAVANA gene 9521910 9522276 367.0 + 0 ENSG00000249443.1 processed_pseudogene AC097493.3 1 OTTHUMG00000160196.2 pseudo_consens +46248 chr4 HAVANA gene 9532429 9532647 219.0 + 0 ENSG00000284648.1 unprocessed_pseudogene AC097493.4 2 OTTHUMG00000192250.1 +46249 chr4 HAVANA gene 9553614 9553985 372.0 - 0 ENSG00000242034.1 processed_pseudogene AC097493.1 1 OTTHUMG00000157432.2 pseudo_consens +46250 chr4 ENSEMBL gene 9556168 9556316 149.0 - 0 ENSG00000221275.1 miRNA MIR548I2 3 +46251 chr4 HAVANA gene 9563171 9563950 780.0 + 0 ENSG00000244004.1 processed_pseudogene AC097493.2 1 OTTHUMG00000157433.2 pseudo_consens +46252 chr4 HAVANA gene 9583942 9584131 190.0 - 0 ENSG00000249799.1 processed_pseudogene SNRPCP13 2 OTTHUMG00000160247.1 +46253 chr4 HAVANA gene 9677308 9677934 627.0 + 0 ENSG00000250942.1 processed_pseudogene ENPP7P11 2 OTTHUMG00000160244.1 +46254 chr4 HAVANA gene 9692495 9702954 885.0 + 0 ENSG00000186234.7 unprocessed_pseudogene FAM86MP 2 OTTHUMG00000160252.1 +46255 chr4 HAVANA gene 9703754 9710812 765.0 - 0 ENSG00000251087.3 unprocessed_pseudogene ALG1L3P 2 OTTHUMG00000160250.1 +46256 chr4 ENSEMBL gene 9711953 9712233 281.0 - 0 ENSG00000203436.2 misc_RNA RF00017 3 +46257 chr4 HAVANA gene 9733370 9742361 541.0 + 0 ENSG00000249563.1 unprocessed_pseudogene AC098976.1 2 OTTHUMG00000160249.1 +46258 chr4 HAVANA gene 9754898 9755778 881.0 + 0 ENSG00000250425.1 unprocessed_pseudogene OR7E35P 1 OTTHUMG00000160248.1 pseudo_consens +46259 chr4 HAVANA gene 9781680 9784009 2330.0 + 0 ENSG00000169676.5 protein_coding DRD5 2 OTTHUMG00000128489.1 retrogene +46260 chr4 ENSEMBL gene 9792751 9792861 111.0 - 0 ENSG00000252002.1 rRNA_pseudogene RNA5SP154 3 +46261 chr4 HAVANA gene 9922814 9924146 508.0 + 0 ENSG00000249219.1 antisense AC108199.1 1 OTTHUMG00000160246.1 +46262 chr4 HAVANA gene 10006482 10009725 459.0 + 0 ENSG00000250413.1 antisense AC005674.1 1 OTTHUMG00000160251.2 +46263 chr4 HAVANA gene 9771153 10054936 6614.0 - 0 ENSG00000109667.11 protein_coding SLC2A9 2 OTTHUMG00000044263.5 +46264 chr4 HAVANA gene 10068089 10073019 3510.0 - 0 ENSG00000261490.1 sense_overlapping AC005674.2 2 OTTHUMG00000176076.1 +46265 chr4 ENSEMBL gene 10078611 10078692 82.0 - 0 ENSG00000264931.1 miRNA MIR3138 3 +46266 chr4 ENSEMBL gene 10115756 10115884 129.0 - 0 ENSG00000223086.1 rRNA_pseudogene RNA5SP155 3 +46267 chr4 HAVANA gene 10074339 10116949 7827.0 - 0 ENSG00000071127.16 protein_coding WDR1 2 OTTHUMG00000160253.2 ncRNA_host +46268 chr4 HAVANA gene 10143367 10143655 289.0 - 0 ENSG00000250393.1 processed_pseudogene AC093664.1 2 OTTHUMG00000160245.1 +46269 chr4 HAVANA gene 10167159 10167765 607.0 - 0 ENSG00000251296.1 processed_pseudogene AC006499.6 1 OTTHUMG00000160066.1 pseudo_consens +46270 chr4 HAVANA gene 10199823 10200672 850.0 - 0 ENSG00000248777.1 processed_pseudogene AC006499.1 1 OTTHUMG00000160059.1 pseudo_consens +46271 chr4 HAVANA gene 10238213 10238235 23.0 - 0 ENSG00000271544.1 processed_pseudogene AC006499.8 2 OTTHUMG00000184300.1 +46272 chr4 HAVANA gene 10254926 10256621 1696.0 - 0 ENSG00000250040.2 processed_pseudogene RAF1P1 2 OTTHUMG00000160133.2 +46273 chr4 HAVANA gene 10259445 10260138 694.0 - 0 ENSG00000250573.1 processed_pseudogene AC006499.4 1 OTTHUMG00000160056.1 pseudo_consens +46274 chr4 HAVANA gene 10267895 10268231 337.0 - 0 ENSG00000250074.1 processed_pseudogene AC006499.2 2 OTTHUMG00000160065.1 +46275 chr4 HAVANA gene 10284961 10285708 748.0 - 0 ENSG00000250505.1 processed_pseudogene AC006499.3 1 OTTHUMG00000160057.1 pseudo_consens +46276 chr4 HAVANA gene 10292195 10292708 514.0 - 0 ENSG00000251278.1 processed_pseudogene AC006499.5 1 OTTHUMG00000160058.1 pseudo_consens +46277 chr4 HAVANA gene 10294463 10295579 1117.0 - 0 ENSG00000251338.1 processed_pseudogene AC006499.7 1 OTTHUMG00000160061.1 pseudo_consens +46278 chr4 HAVANA gene 10410996 10411644 329.0 + 0 ENSG00000250613.1 processed_pseudogene AC110768.2 1 OTTHUMG00000160015.1 pseudo_consens +46279 chr4 HAVANA gene 10439874 10457410 10905.0 - 0 ENSG00000178163.7 protein_coding ZNF518B 2 OTTHUMG00000160060.2 +46280 chr4 HAVANA gene 10478524 10478923 400.0 - 0 ENSG00000248419.2 processed_pseudogene AC110768.1 1 OTTHUMG00000160064.2 pseudo_consens +46281 chr4 HAVANA gene 10486395 10684865 6206.0 - 0 ENSG00000109684.14 protein_coding CLNK 2 OTTHUMG00000160062.1 +46282 chr4 HAVANA gene 10685003 10697661 640.0 + 0 ENSG00000249334.1 lincRNA AC084048.1 2 OTTHUMG00000160063.2 +46283 chr4 HAVANA gene 10737572 10749586 1065.0 + 0 ENSG00000283083.1 lincRNA LINC02498 2 OTTHUMG00000191612.1 +46284 chr4 ENSEMBL gene 11368827 11368921 95.0 + 0 ENSG00000207716.1 miRNA MIR572 3 +46285 chr4 HAVANA gene 11371975 11372892 918.0 + 0 ENSG00000250896.1 processed_pseudogene RNPS1P1 1 OTTHUMG00000160043.1 pseudo_consens +46286 chr4 ENSEMBL gene 11414051 11414160 110.0 - 0 ENSG00000222182.1 rRNA_pseudogene RNA5SP156 3 +46287 chr4 HAVANA gene 11393150 11429765 8166.0 - 0 ENSG00000002587.9 protein_coding HS3ST1 2 OTTHUMG00000090547.6 +46288 chr4 HAVANA gene 11469250 11478196 4019.0 + 0 ENSG00000251152.1 lincRNA AC025539.1 1 OTTHUMG00000160040.1 +46289 chr4 HAVANA gene 11740948 11769468 657.0 - 0 ENSG00000248300.1 lincRNA LINC02360 2 OTTHUMG00000160041.1 +46290 chr4 HAVANA gene 11625714 11813958 2016.0 + 0 ENSG00000249631.5 lincRNA AC005699.1 1 OTTHUMG00000160044.5 +46291 chr4 HAVANA gene 11914667 11919688 423.0 + 0 ENSG00000248262.1 lincRNA AC108037.1 2 OTTHUMG00000160075.1 +46292 chr4 HAVANA gene 12223451 12251286 968.0 + 0 ENSG00000251210.5 lincRNA LINC02270 1 OTTHUMG00000160074.2 +46293 chr4 ENSEMBL gene 12312588 12312690 103.0 + 0 ENSG00000212282.1 snRNA RNU6-578P 3 +46294 chr4 HAVANA gene 12640298 12640637 340.0 - 0 ENSG00000249780.1 processed_pseudogene AC093809.1 2 OTTHUMG00000160262.1 +46295 chr4 HAVANA gene 12639086 12641009 1577.0 + 0 ENSG00000249995.1 processed_pseudogene ECM1P2 1 OTTHUMG00000160087.1 pseudo_consens +46296 chr4 HAVANA gene 12859101 12864961 2694.0 - 0 ENSG00000250371.1 lincRNA AC007370.2 2 OTTHUMG00000161598.1 +46297 chr4 HAVANA gene 12947574 12948670 316.0 - 0 ENSG00000250098.1 lincRNA AC007370.1 2 OTTHUMG00000161597.1 +46298 chr4 ENSEMBL gene 13051342 13051411 70.0 + 0 ENSG00000283271.1 snRNA RF00026 3 +46299 chr4 HAVANA gene 13333414 13338657 2299.0 + 0 ENSG00000205940.8 transcribed_processed_pseudogene HSP90AB2P 1 OTTHUMG00000160089.2 pseudo_consens +46300 chr4 HAVANA gene 13361354 13484365 2221.0 - 0 ENSG00000157869.14 protein_coding RAB28 1 OTTHUMG00000090543.2 +46301 chr4 HAVANA gene 13526319 13534335 2226.0 - 0 ENSG00000281202.2 lincRNA LINC01097 2 OTTHUMG00000189540.1 +46302 chr4 HAVANA gene 13540830 13545050 2801.0 - 0 ENSG00000109705.7 protein_coding NKX3-2 2 OTTHUMG00000090657.3 +46303 chr4 HAVANA gene 13546075 13547801 1264.0 - 0 ENSG00000246095.2 lincRNA LINC01096 2 OTTHUMG00000160090.1 +46304 chr4 HAVANA gene 13568738 13627723 15860.0 - 0 ENSG00000038219.12 protein_coding BOD1L1 1 OTTHUMG00000090659.4 +46305 chr4 ENSEMBL gene 13627865 13627957 93.0 + 0 ENSG00000266240.1 miRNA MIR5091 3 +46306 chr4 HAVANA gene 13631820 13632599 472.0 - 0 ENSG00000249148.2 processed_pseudogene AC006445.2 1 OTTHUMG00000160088.2 pseudo_consens +46307 chr4 HAVANA gene 13647697 13648400 405.0 - 0 ENSG00000242209.1 processed_pseudogene AC006445.1 1 OTTHUMG00000157436.1 pseudo_consens +46308 chr4 HAVANA gene 13777377 13782157 4781.0 - 0 ENSG00000250497.1 lincRNA AC007126.1 2 OTTHUMG00000160355.1 +46309 chr4 HAVANA gene 13655179 13977075 2742.0 + 0 ENSG00000250634.5 lincRNA LINC01182 2 OTTHUMG00000160104.2 +46310 chr4 HAVANA gene 13977166 13978028 863.0 + 0 ENSG00000224569.3 processed_pseudogene AC095052.1 1 OTTHUMG00000160102.2 pseudo_consens +46311 chr4 HAVANA gene 14111968 14140052 2342.0 + 0 ENSG00000248698.6 transcribed_processed_pseudogene LINC01085 2 OTTHUMG00000160101.2 +46312 chr4 HAVANA gene 14134936 14143592 457.0 + 0 ENSG00000251679.1 lincRNA AC073848.1 2 OTTHUMG00000160100.1 +46313 chr4 HAVANA gene 14164455 14242813 649.0 + 0 ENSG00000249988.1 lincRNA AC092546.1 1 OTTHUMG00000160103.2 +46314 chr4 HAVANA gene 14390439 14393992 591.0 + 0 ENSG00000248425.1 lincRNA AC006296.1 1 OTTHUMG00000160105.1 +46315 chr4 HAVANA gene 14383123 14409078 764.0 - 0 ENSG00000251412.1 lincRNA AC006296.2 2 OTTHUMG00000160106.1 +46316 chr4 HAVANA gene 14505865 14506480 616.0 - 0 ENSG00000251252.1 processed_pseudogene MTND2P31 2 OTTHUMG00000160120.1 overlapping_locus +46317 chr4 ENSEMBL gene 14690710 14690832 123.0 + 0 ENSG00000202449.1 snoRNA RF00092 3 +46318 chr4 HAVANA gene 14470465 14888169 5095.0 - 0 ENSG00000248360.7 lincRNA LINC00504 2 OTTHUMG00000160121.6 overlapping_locus +46319 chr4 HAVANA gene 14909961 15002045 3089.0 - 0 ENSG00000247624.6 lincRNA CPEB2-DT 2 OTTHUMG00000160381.3 +46320 chr4 HAVANA gene 15002674 15070153 7177.0 + 0 ENSG00000137449.15 protein_coding CPEB2 2 OTTHUMG00000090669.2 +46321 chr4 ENSEMBL gene 15093767 15094094 328.0 - 0 ENSG00000199420.1 misc_RNA RN7SKP170 3 +46322 chr4 HAVANA gene 15358141 15420032 871.0 - 0 ENSG00000251379.1 antisense AC099550.1 2 OTTHUMG00000160269.1 overlapping_locus +46323 chr4 HAVANA gene 15004942 15427914 907.0 - 0 ENSG00000249252.5 antisense AC098829.1 2 OTTHUMG00000160132.3 ncRNA_host,overlapping_locus +46324 chr4 HAVANA gene 15339818 15446166 5583.0 + 0 ENSG00000163145.12 protein_coding C1QTNF7 1 OTTHUMG00000097095.5 +46325 chr4 HAVANA gene 15492729 15492972 244.0 - 0 ENSG00000249930.1 processed_pseudogene AC007016.1 1 OTTHUMG00000160270.1 pseudo_consens +46326 chr4 HAVANA gene 15563698 15564253 556.0 - 0 ENSG00000273133.1 antisense AC116651.1 2 OTTHUMG00000186247.1 +46327 chr4 HAVANA gene 15469865 15601557 7606.0 + 0 ENSG00000048342.15 protein_coding CC2D2A 2 OTTHUMG00000160255.15 +46328 chr4 HAVANA gene 15604539 15681679 4573.0 - 0 ENSG00000118564.14 protein_coding FBXL5 1 OTTHUMG00000097097.4 +46329 chr4 HAVANA gene 15681662 15705565 4817.0 + 0 ENSG00000237765.6 protein_coding FAM200B 2 OTTHUMG00000160279.3 overlapping_locus +46330 chr4 HAVANA gene 15730962 15731627 666.0 - 0 ENSG00000214846.4 processed_pseudogene AC114744.1 1 OTTHUMG00000157437.1 pseudo_consens +46331 chr4 HAVANA gene 15702950 15738313 2980.0 + 0 ENSG00000109743.10 protein_coding BST1 1 OTTHUMG00000097739.2 overlapping_locus +46332 chr4 HAVANA gene 15743196 15743582 387.0 + 0 ENSG00000248188.2 processed_pseudogene AC005798.1 1 OTTHUMG00000160271.2 pseudo_consens +46333 chr4 HAVANA gene 15778275 15853230 6855.0 + 0 ENSG00000004468.12 protein_coding CD38 2 OTTHUMG00000048206.5 +46334 chr4 HAVANA gene 15864938 15865940 657.0 - 0 ENSG00000251644.1 processed_pseudogene HPRT1P1 1 OTTHUMG00000160176.1 pseudo_consens +46335 chr4 HAVANA gene 15935569 15938740 1359.0 - 0 ENSG00000137440.4 protein_coding FGFBP1 2 OTTHUMG00000097745.1 +46336 chr4 HAVANA gene 15960243 15969309 1250.0 - 0 ENSG00000137441.7 protein_coding FGFBP2 2 OTTHUMG00000128513.2 overlapping_locus +46337 chr4 HAVANA gene 15963076 16084378 7434.0 - 0 ENSG00000007062.11 protein_coding PROM1 1 OTTHUMG00000160180.6 overlapping_locus +46338 chr4 HAVANA gene 16178939 16183120 414.0 + 0 ENSG00000249234.1 antisense AC108063.1 2 OTTHUMG00000160178.1 +46339 chr4 HAVANA gene 16160505 16227410 7828.0 - 0 ENSG00000169762.16 protein_coding TAPT1 2 OTTHUMG00000160177.2 +46340 chr4 HAVANA gene 16256308 16256555 248.0 - 0 ENSG00000242358.1 processed_pseudogene RPS21P4 1 OTTHUMG00000157438.1 pseudo_consens +46341 chr4 HAVANA gene 16307456 16308167 712.0 + 0 ENSG00000248851.1 processed_pseudogene AC006427.1 2 OTTHUMG00000160175.1 overlapping_locus +46342 chr4 HAVANA gene 16226685 16320140 2763.0 + 0 ENSG00000263327.6 antisense TAPT1-AS1 2 OTTHUMG00000160321.2 overlapping_locus +46343 chr4 HAVANA gene 16360686 16397323 1938.0 - 0 ENSG00000249506.3 transcribed_processed_pseudogene ZEB2P1 2 OTTHUMG00000160179.3 +46344 chr4 HAVANA gene 16400430 16512187 730.0 + 0 ENSG00000248138.5 antisense AC097515.1 2 OTTHUMG00000160203.1 +46345 chr4 HAVANA gene 16501541 16898809 5586.0 - 0 ENSG00000169744.12 protein_coding LDB2 1 OTTHUMG00000048212.4 +46346 chr4 HAVANA gene 17061878 17062165 288.0 + 0 ENSG00000251212.1 processed_pseudogene MTND5P4 2 OTTHUMG00000160230.1 +46347 chr4 HAVANA gene 16973275 17073903 451.0 - 0 ENSG00000249998.1 lincRNA AC106894.1 2 OTTHUMG00000160229.1 +46348 chr4 HAVANA gene 17171757 17186059 1704.0 - 0 ENSG00000250819.1 lincRNA LINC02493 2 OTTHUMG00000160219.1 +46349 chr4 ENSEMBL gene 17320746 17320882 137.0 - 0 ENSG00000206780.1 snoRNA SNORA75B 3 +46350 chr4 HAVANA gene 17427696 17428274 579.0 - 0 ENSG00000215278.4 processed_pseudogene RPS7P6 2 OTTHUMG00000157441.1 +46351 chr4 HAVANA gene 17460261 17512234 3059.0 - 0 ENSG00000151552.11 protein_coding QDPR 2 OTTHUMG00000128537.3 +46352 chr4 HAVANA gene 17515165 17527104 823.0 + 0 ENSG00000249581.2 protein_coding CLRN2 2 OTTHUMG00000160273.2 +46353 chr4 HAVANA gene 17552117 17552752 636.0 - 0 ENSG00000249488.1 processed_pseudogene NACAP5 1 OTTHUMG00000160274.1 pseudo_consens +46354 chr4 HAVANA gene 17557892 17558045 154.0 - 0 ENSG00000283219.1 unprocessed_pseudogene AC006160.2 2 OTTHUMG00000191801.1 +46355 chr4 HAVANA gene 17577192 17607972 3785.0 + 0 ENSG00000002549.12 protein_coding LAP3 2 OTTHUMG00000048214.7 +46356 chr4 HAVANA gene 17587467 17614571 750.0 - 0 ENSG00000249502.1 antisense AC006160.1 2 OTTHUMG00000160283.2 +46357 chr4 HAVANA gene 17614631 17634105 10982.0 + 0 ENSG00000118579.12 protein_coding MED28 1 OTTHUMG00000161980.3 +46358 chr4 HAVANA gene 17629306 17781512 6622.0 - 0 ENSG00000047662.4 protein_coding FAM184B 2 OTTHUMG00000160287.2 +46359 chr4 HAVANA gene 17800655 17810758 4816.0 - 0 ENSG00000163257.10 protein_coding DCAF16 2 OTTHUMG00000128536.3 +46360 chr4 HAVANA gene 17810902 17844862 4921.0 + 0 ENSG00000109805.9 protein_coding NCAPG 2 OTTHUMG00000128539.3 +46361 chr4 HAVANA gene 17911674 17912976 979.0 + 0 ENSG00000235413.3 processed_pseudogene KRT18P63 1 OTTHUMG00000160322.1 pseudo_consens +46362 chr4 HAVANA gene 17841199 18021876 14858.0 - 0 ENSG00000178177.15 protein_coding LCORL 2 OTTHUMG00000128538.6 +46363 chr4 HAVANA gene 18488062 18489508 534.0 - 0 ENSG00000251048.1 lincRNA AC093871.1 2 OTTHUMG00000160241.1 +46364 chr4 HAVANA gene 19098199 19098740 542.0 + 0 ENSG00000279918.1 TEC AC006840.1 2 OTTHUMG00000161627.1 +46365 chr4 ENSEMBL gene 19181814 19181856 43.0 - 0 ENSG00000251816.1 rRNA_pseudogene RNA5SP157 3 +46366 chr4 HAVANA gene 19257951 19258337 387.0 - 0 ENSG00000279379.1 TEC AC024595.1 2 OTTHUMG00000161626.1 overlapping_locus +46367 chr4 HAVANA gene 19172335 19456994 641.0 - 0 ENSG00000248238.1 lincRNA LINC02438 2 OTTHUMG00000160243.1 overlapping_locus +46368 chr4 HAVANA gene 19747179 19754591 239.0 - 0 ENSG00000249441.1 lincRNA AC110767.1 2 OTTHUMG00000161628.1 +46369 chr4 HAVANA gene 19813749 19814231 483.0 + 0 ENSG00000241612.1 processed_pseudogene AC114728.1 1 OTTHUMG00000157442.1 pseudo_consens,overlapping_locus +46370 chr4 HAVANA gene 19455436 19909692 889.0 + 0 ENSG00000248515.1 lincRNA AC024230.1 2 OTTHUMG00000160142.1 overlapping_locus +46371 chr4 HAVANA gene 20037560 20037972 413.0 - 0 ENSG00000250611.1 processed_pseudogene AC098862.1 2 OTTHUMG00000160240.1 +46372 chr4 HAVANA gene 20392189 20394856 601.0 + 0 ENSG00000248228.1 sense_intronic SLIT2-IT1 2 OTTHUMG00000160239.1 overlapping_locus +46373 chr4 ENSEMBL gene 20528275 20528384 110.0 + 0 ENSG00000207732.1 miRNA MIR218-1 3 +46374 chr4 HAVANA gene 20253260 20620561 9712.0 + 0 ENSG00000145147.19 protein_coding SLIT2 2 OTTHUMG00000128551.4 ncRNA_host,overlapping_locus +46375 chr4 HAVANA gene 20696282 20752907 4032.0 + 0 ENSG00000163138.18 protein_coding PACRGL 1 OTTHUMG00000128550.18 +46376 chr4 HAVANA gene 20766808 20767372 565.0 + 0 ENSG00000272995.1 antisense AC097505.1 2 OTTHUMG00000186259.1 +46377 chr4 HAVANA gene 21304542 21316485 341.0 + 0 ENSG00000250243.2 antisense AC110296.1 2 OTTHUMG00000160928.3 +46378 chr4 ENSEMBL gene 21464700 21464758 59.0 - 0 ENSG00000283281.1 miRNA MIR7978 3 +46379 chr4 HAVANA gene 21582096 21613728 721.0 + 0 ENSG00000250092.2 antisense AC096576.3 2 OTTHUMG00000160925.3 +46380 chr4 HAVANA gene 21656511 21656869 359.0 - 0 ENSG00000242768.2 processed_pseudogene AC096576.1 1 OTTHUMG00000157443.2 pseudo_consens,overlapping_locus +46381 chr4 HAVANA gene 21697450 21719026 948.0 + 0 ENSG00000248343.1 antisense AC096576.2 2 OTTHUMG00000160927.1 +46382 chr4 HAVANA gene 21843341 21853188 9848.0 - 0 ENSG00000280650.1 lincRNA KCNIP4-IT1 2 OTTHUMG00000189553.1 +46383 chr4 HAVANA gene 20728616 21948799 4140.0 - 0 ENSG00000185774.15 protein_coding KCNIP4 2 OTTHUMG00000128557.11 ncRNA_host,overlapping_locus +46384 chr4 ENSEMBL gene 22118983 22119089 107.0 + 0 ENSG00000239001.1 snRNA RNU6-420P 3 +46385 chr4 HAVANA gene 21949015 22330330 1874.0 + 0 ENSG00000250039.3 antisense AC096719.1 2 OTTHUMG00000162099.4 ncRNA_host +46386 chr4 HAVANA gene 22345071 22516054 9250.0 - 0 ENSG00000152990.13 protein_coding ADGRA3 1 OTTHUMG00000160926.12 +46387 chr4 HAVANA gene 22594196 22594450 255.0 + 0 ENSG00000244538.1 processed_pseudogene AC098583.1 2 OTTHUMG00000157444.1 +46388 chr4 HAVANA gene 22607501 22611063 372.0 + 0 ENSG00000251516.1 unprocessed_pseudogene AC098583.2 2 OTTHUMG00000160447.2 +46389 chr4 HAVANA gene 22727375 22727950 576.0 - 0 ENSG00000237350.1 processed_pseudogene CDC42P6 2 OTTHUMG00000160449.1 +46390 chr4 HAVANA gene 22692914 22819575 2932.0 + 0 ENSG00000249948.6 polymorphic_pseudogene GBA3 2 OTTHUMG00000160448.4 +46391 chr4 HAVANA gene 22997551 23056862 2175.0 + 0 ENSG00000248837.5 lincRNA AC097512.1 2 OTTHUMG00000160256.1 +46392 chr4 HAVANA gene 23105502 23123487 546.0 + 0 ENSG00000249645.1 lincRNA AC114912.1 2 OTTHUMG00000160257.2 +46393 chr4 HAVANA gene 23234625 23285573 571.0 - 0 ENSG00000249547.1 lincRNA AC092440.1 2 OTTHUMG00000160259.1 +46394 chr4 HAVANA gene 23514940 23515284 345.0 - 0 ENSG00000251220.2 processed_pseudogene RFPL4AP3 2 OTTHUMG00000160258.2 +46395 chr4 HAVANA gene 23723262 23733579 639.0 - 0 ENSG00000251292.1 lincRNA ERVH-1 2 OTTHUMG00000160276.1 +46396 chr4 HAVANA gene 23560923 23768652 703.0 + 0 ENSG00000250137.1 antisense AC093607.1 2 OTTHUMG00000160278.1 +46397 chr4 HAVANA gene 23779590 23782560 442.0 + 0 ENSG00000249453.1 antisense AC092834.1 2 OTTHUMG00000160277.1 +46398 chr4 HAVANA gene 23755041 23904089 10870.0 - 0 ENSG00000109819.8 protein_coding PPARGC1A 1 OTTHUMG00000097747.2 +46399 chr4 ENSEMBL gene 24520192 24520290 99.0 - 0 ENSG00000207697.1 miRNA MIR573 3 +46400 chr4 ENSEMBL gene 24563193 24563461 269.0 - 0 ENSG00000243005.3 misc_RNA RN7SL16P 3 +46401 chr4 HAVANA gene 24517441 24584550 8162.0 - 0 ENSG00000109606.12 protein_coding DHX15 2 OTTHUMG00000160304.1 ncRNA_host +46402 chr4 HAVANA gene 24658072 24658375 304.0 - 0 ENSG00000249256.2 processed_pseudogene ATP5MGP3 1 OTTHUMG00000160306.2 pseudo_consens +46403 chr4 HAVANA gene 24659856 24671568 2195.0 + 0 ENSG00000261121.1 lincRNA LINC02473 2 OTTHUMG00000176117.1 +46404 chr4 HAVANA gene 24768049 24768331 283.0 + 0 ENSG00000251638.1 processed_pseudogene AC006390.1 1 OTTHUMG00000160305.1 pseudo_consens +46405 chr4 HAVANA gene 24771467 24772420 954.0 + 0 ENSG00000248444.1 processed_pseudogene HNRNPA1P65 1 OTTHUMG00000160307.1 pseudo_consens +46406 chr4 HAVANA gene 24789912 24800842 2128.0 + 0 ENSG00000109610.5 protein_coding SOD3 2 OTTHUMG00000128565.3 +46407 chr4 HAVANA gene 24806117 24980204 9582.0 - 0 ENSG00000181982.18 protein_coding CCDC149 1 OTTHUMG00000160308.2 +46408 chr4 HAVANA gene 24998847 25030879 6428.0 - 0 ENSG00000153012.11 protein_coding LGI2 2 OTTHUMG00000097749.3 +46409 chr4 HAVANA gene 25120014 25160442 6232.0 - 0 ENSG00000109618.11 protein_coding SEPSECS 1 OTTHUMG00000128563.4 +46410 chr4 HAVANA gene 25160641 25201440 4356.0 + 0 ENSG00000281501.1 antisense SEPSECS-AS1 2 OTTHUMG00000189520.1 overlapping_locus +46411 chr4 HAVANA gene 25220403 25220913 511.0 + 0 ENSG00000271172.1 lincRNA AC104662.1 2 OTTHUMG00000185111.1 overlapping_locus +46412 chr4 ENSEMBL gene 25250545 25250639 95.0 + 0 ENSG00000278135.1 snRNA RF00004 3 +46413 chr4 HAVANA gene 25160663 25277306 1388.0 + 0 ENSG00000281028.1 protein_coding AC104662.2 2 OTTHUMG00000189521.1 ncRNA_host +46414 chr4 HAVANA gene 25233975 25279092 3540.0 + 0 ENSG00000038210.12 protein_coding PI4K2B 1 OTTHUMG00000128564.2 ncRNA_host,overlapping_locus +46415 chr4 HAVANA gene 25312785 25370383 4400.0 + 0 ENSG00000168228.14 protein_coding ZCCHC4 2 OTTHUMG00000160563.1 +46416 chr4 HAVANA gene 25377213 25418498 7494.0 + 0 ENSG00000053900.10 protein_coding ANAPC4 2 OTTHUMG00000097753.4 +46417 chr4 HAVANA gene 25472517 25473815 578.0 + 0 ENSG00000249320.1 processed_pseudogene AC133963.2 2 OTTHUMG00000160587.1 +46418 chr4 HAVANA gene 25504997 25506675 1679.0 + 0 ENSG00000248608.2 processed_pseudogene AC133963.1 1 OTTHUMG00000160586.2 pseudo_consens +46419 chr4 ENSEMBL gene 25598564 25598625 62.0 - 0 ENSG00000238632.1 snRNA RNU7-126P 3 +46420 chr4 HAVANA gene 25608711 25619468 411.0 + 0 ENSG00000248545.2 lincRNA AC092436.2 2 OTTHUMG00000160281.2 +46421 chr4 HAVANA gene 25622777 25623601 503.0 + 0 ENSG00000228154.3 processed_pseudogene AC092436.1 1 OTTHUMG00000160280.1 pseudo_consens +46422 chr4 HAVANA gene 25648011 25678748 5045.0 + 0 ENSG00000157765.12 protein_coding SLC34A2 2 OTTHUMG00000097757.5 +46423 chr4 HAVANA gene 25678850 25679020 171.0 + 0 ENSG00000242640.1 processed_pseudogene RPS29P11 1 OTTHUMG00000157445.1 pseudo_consens +46424 chr4 HAVANA gene 25686202 25686458 257.0 - 0 ENSG00000249277.1 processed_pseudogene AC092436.3 1 OTTHUMG00000160333.1 pseudo_consens +46425 chr4 HAVANA gene 25718082 25719745 1346.0 - 0 ENSG00000250050.1 unprocessed_pseudogene MTND4P9 2 OTTHUMG00000160336.1 +46426 chr4 HAVANA gene 25719755 25720030 276.0 - 0 ENSG00000248133.1 unprocessed_pseudogene MTND4LP22 2 OTTHUMG00000160334.1 +46427 chr4 HAVANA gene 25720099 25720431 333.0 - 0 ENSG00000251353.1 unprocessed_pseudogene MTND3P5 2 OTTHUMG00000160335.1 +46428 chr4 HAVANA gene 25720516 25721056 541.0 - 0 ENSG00000248654.1 unprocessed_pseudogene MTCO3P44 2 OTTHUMG00000160338.1 +46429 chr4 HAVANA gene 25770266 25773577 483.0 + 0 ENSG00000250541.1 antisense AC092436.4 1 OTTHUMG00000160337.1 +46430 chr4 HAVANA gene 25747427 25863760 7489.0 - 0 ENSG00000091490.10 protein_coding SEL1L3 1 OTTHUMG00000160331.5 +46431 chr4 HAVANA gene 25864881 25869550 762.0 - 0 ENSG00000251009.2 lincRNA AC133961.1 1 OTTHUMG00000160332.1 +46432 chr4 HAVANA gene 25861830 25929874 1612.0 + 0 ENSG00000250317.8 protein_coding SMIM20 2 OTTHUMG00000160330.3 +46433 chr4 HAVANA gene 26070754 26104258 1622.0 + 0 ENSG00000283314.1 lincRNA LINC02357 2 OTTHUMG00000191703.1 +46434 chr4 HAVANA gene 26111865 26113839 1647.0 + 0 ENSG00000248452.2 processed_pseudogene AC097714.1 2 OTTHUMG00000160301.2 +46435 chr4 HAVANA gene 26163455 26435131 9253.0 + 0 ENSG00000168214.20 protein_coding RBPJ 1 OTTHUMG00000097793.10 +46436 chr4 HAVANA gene 26481400 26490462 1720.0 - 0 ENSG00000163394.5 protein_coding CCKAR 2 OTTHUMG00000128567.2 +46437 chr4 ENSEMBL gene 26702309 26702388 80.0 + 0 ENSG00000200999.1 snoRNA RF00284 3 +46438 chr4 HAVANA gene 26576437 26755351 3434.0 + 0 ENSG00000109680.10 protein_coding TBC1D19 2 OTTHUMG00000097797.4 ncRNA_host +46439 chr4 HAVANA gene 26859806 26860599 589.0 - 0 ENSG00000240005.5 antisense AC106047.1 2 OTTHUMG00000159680.2 +46440 chr4 HAVANA gene 26873561 26874349 743.0 - 0 ENSG00000248340.2 processed_pseudogene AC106047.2 1 OTTHUMG00000160326.2 pseudo_consens +46441 chr4 HAVANA gene 26857678 27025381 6909.0 + 0 ENSG00000109689.15 protein_coding STIM2 1 OTTHUMG00000097805.7 +46442 chr4 HAVANA gene 27133996 27140051 482.0 - 0 ENSG00000251080.1 lincRNA AC024132.2 2 OTTHUMG00000161693.1 +46443 chr4 HAVANA gene 27207505 27218404 2509.0 - 0 ENSG00000205830.1 lincRNA AC024132.1 2 OTTHUMG00000150675.1 +46444 chr4 ENSEMBL gene 27223319 27223427 109.0 - 0 ENSG00000222206.1 misc_RNA RF00019 3 +46445 chr4 HAVANA gene 27262506 27267254 649.0 - 0 ENSG00000251325.1 lincRNA AC024132.3 2 OTTHUMG00000161691.1 +46446 chr4 HAVANA gene 27217479 27282225 2802.0 + 0 ENSG00000249699.1 lincRNA LINC02261 2 OTTHUMG00000161689.1 +46447 chr4 HAVANA gene 27585145 27586144 1000.0 + 0 ENSG00000250858.1 processed_pseudogene IGBP1P5 1 OTTHUMG00000160327.1 pseudo_consens +46448 chr4 HAVANA gene 27967723 27985063 600.0 - 0 ENSG00000251410.1 lincRNA AC007106.1 2 OTTHUMG00000161695.1 +46449 chr4 HAVANA gene 28362279 28402864 1304.0 - 0 ENSG00000250038.5 lincRNA AC109588.1 1 OTTHUMG00000161692.2 +46450 chr4 HAVANA gene 28435449 28600275 712.0 + 0 ENSG00000250064.1 lincRNA AC097480.1 1 OTTHUMG00000160318.1 +46451 chr4 ENSEMBL gene 28711198 28711476 279.0 + 0 ENSG00000243548.3 misc_RNA RN7SL101P 3 +46452 chr4 ENSEMBL gene 28819582 28819668 87.0 + 0 ENSG00000283275.1 miRNA MIR4275 3 +46453 chr4 HAVANA gene 28823244 28824211 968.0 - 0 ENSG00000250927.1 processed_pseudogene MESTP3 1 OTTHUMG00000160398.1 pseudo_consens +46454 chr4 HAVANA gene 29010619 29011021 403.0 - 0 ENSG00000276507.1 processed_pseudogene AC068944.2 2 OTTHUMG00000187575.1 +46455 chr4 HAVANA gene 28996524 29014594 687.0 + 0 ENSG00000250190.1 lincRNA LINC02364 1 OTTHUMG00000160395.1 +46456 chr4 HAVANA gene 29046591 29048765 1604.0 + 0 ENSG00000249228.1 lincRNA AC068944.1 2 OTTHUMG00000160396.1 +46457 chr4 HAVANA gene 29118308 29202770 758.0 + 0 ENSG00000248176.1 lincRNA AC109349.1 2 OTTHUMG00000161694.1 +46458 chr4 HAVANA gene 29214398 29221162 575.0 + 0 ENSG00000248338.1 lincRNA LINC02472 2 OTTHUMG00000161690.1 +46459 chr4 HAVANA gene 29407100 29408012 913.0 + 0 ENSG00000251373.1 processed_pseudogene AC092593.2 2 OTTHUMG00000160343.1 +46460 chr4 HAVANA gene 29465701 29467850 1815.0 - 0 ENSG00000251113.2 processed_pseudogene AC092593.1 1 OTTHUMG00000160344.2 pseudo_consens +46461 chr4 ENSEMBL gene 29510635 29510737 103.0 + 0 ENSG00000283666.1 snRNA RF00026 3 +46462 chr4 HAVANA gene 29748757 29750100 1344.0 + 0 ENSG00000249542.2 processed_pseudogene EEF1A1P21 1 OTTHUMG00000160342.2 pseudo_consens +46463 chr4 HAVANA gene 29907659 29907791 133.0 - 0 ENSG00000249564.1 processed_pseudogene AC097510.1 2 OTTHUMG00000160341.1 +46464 chr4 HAVANA gene 29962644 29963758 777.0 - 0 ENSG00000244031.3 processed_pseudogene RPS3AP17 1 OTTHUMG00000157446.3 pseudo_consens +46465 chr4 HAVANA gene 30006951 30008316 992.0 - 0 ENSG00000248281.1 processed_pseudogene AC106868.1 1 OTTHUMG00000160340.1 pseudo_consens +46466 chr4 HAVANA gene 30776257 30793970 180.0 - 0 ENSG00000249678.1 antisense AC097716.1 2 OTTHUMG00000160365.1 +46467 chr4 HAVANA gene 30884443 30885182 740.0 - 0 ENSG00000250624.1 unprocessed_pseudogene MTCYBP43 2 OTTHUMG00000160366.1 +46468 chr4 HAVANA gene 30720415 31146805 12249.0 + 0 ENSG00000169851.15 protein_coding PCDH7 1 OTTHUMG00000160364.4 +46469 chr4 HAVANA gene 31171144 31211675 507.0 + 0 ENSG00000251182.1 lincRNA LINC02497 2 OTTHUMG00000160369.1 +46470 chr4 HAVANA gene 31350284 31351725 602.0 + 0 ENSG00000251434.1 lincRNA AC104071.1 2 OTTHUMG00000160363.1 +46471 chr4 HAVANA gene 31506666 31558821 426.0 + 0 ENSG00000249882.1 lincRNA LINC02501 2 OTTHUMG00000160367.1 +46472 chr4 HAVANA gene 31997397 32155406 734.0 + 0 ENSG00000251129.1 lincRNA LINC02506 2 OTTHUMG00000160440.1 +46473 chr4 HAVANA gene 32351038 32353220 849.0 + 0 ENSG00000251329.1 lincRNA LINC02353 2 OTTHUMG00000160346.1 +46474 chr4 HAVANA gene 33010948 33011746 799.0 - 0 ENSG00000250076.1 processed_pseudogene AC017013.1 1 OTTHUMG00000160348.1 pseudo_consens +46475 chr4 HAVANA gene 33238239 33238670 432.0 - 0 ENSG00000249452.2 processed_pseudogene AC093878.1 2 OTTHUMG00000160353.2 +46476 chr4 HAVANA gene 33400538 33400679 142.0 + 0 ENSG00000249766.1 processed_pseudogene AC097535.2 2 OTTHUMG00000160351.1 +46477 chr4 HAVANA gene 33433510 33437877 332.0 + 0 ENSG00000248417.1 lincRNA AC097535.1 2 OTTHUMG00000160350.1 +46478 chr4 HAVANA gene 33968174 33968526 353.0 + 0 ENSG00000239983.1 processed_pseudogene AC016687.1 1 OTTHUMG00000157448.1 pseudo_consens,overlapping_locus +46479 chr4 HAVANA gene 33850591 33979936 1207.0 + 0 ENSG00000250723.5 lincRNA AC016687.2 2 OTTHUMG00000160349.2 overlapping_locus +46480 chr4 HAVANA gene 33776347 34039893 2680.0 - 0 ENSG00000250954.5 lincRNA AC016687.3 2 OTTHUMG00000160354.3 +46481 chr4 HAVANA gene 34120894 34269747 989.0 - 0 ENSG00000248685.5 lincRNA LINC02484 2 OTTHUMG00000160362.1 +46482 chr4 HAVANA gene 34657606 34669432 545.0 + 0 ENSG00000250597.5 lincRNA AC093689.1 2 OTTHUMG00000160471.1 +46483 chr4 HAVANA gene 34714270 34714598 329.0 + 0 ENSG00000275250.1 processed_pseudogene AC093913.1 2 OTTHUMG00000187589.1 +46484 chr4 ENSEMBL gene 34966241 34966344 104.0 - 0 ENSG00000238694.1 snoRNA RF01210 3 +46485 chr4 HAVANA gene 35487812 35489750 1939.0 + 0 ENSG00000250416.2 processed_pseudogene SEC63P2 1 OTTHUMG00000160374.2 pseudo_consens +46486 chr4 ENSEMBL gene 35495898 35496003 106.0 + 0 ENSG00000206665.1 snRNA RNU6-573P 3 +46487 chr4 HAVANA gene 36065060 36065726 667.0 - 0 ENSG00000248466.1 processed_pseudogene AC098827.1 1 OTTHUMG00000160391.1 pseudo_consens,overlapping_locus +46488 chr4 HAVANA gene 35948221 36244509 12428.0 - 0 ENSG00000047365.11 protein_coding ARAP2 2 OTTHUMG00000097811.6 overlapping_locus +46489 chr4 HAVANA gene 36244116 36274220 1785.0 + 0 ENSG00000247193.2 antisense AC104078.1 2 OTTHUMG00000160372.1 +46490 chr4 HAVANA gene 36281622 36345756 5618.0 + 0 ENSG00000197057.9 protein_coding DTHD1 2 OTTHUMG00000160371.3 +46491 chr4 HAVANA gene 36311190 36392410 541.0 - 0 ENSG00000251438.1 antisense AC104078.2 2 OTTHUMG00000160373.1 +46492 chr4 ENSEMBL gene 36426366 36426428 63.0 - 0 ENSG00000283207.1 miRNA MIR1255B1 3 +46493 chr4 HAVANA gene 36506043 36508869 2827.0 + 0 ENSG00000251588.2 processed_pseudogene AC125336.1 1 OTTHUMG00000160370.2 pseudo_consens +46494 chr4 HAVANA gene 36496537 36641900 1626.0 - 0 ENSG00000248215.5 lincRNA LINC02505 2 OTTHUMG00000161702.1 +46495 chr4 HAVANA gene 37001816 37020708 2534.0 + 0 ENSG00000261761.3 processed_transcript AL136537.2 2 OTTHUMG00000175975.2 +46496 chr4 HAVANA gene 37078577 37125424 840.0 + 0 ENSG00000247810.6 lincRNA AL136537.1 1 OTTHUMG00000160388.2 +46497 chr4 ENSEMBL gene 37241910 37241991 82.0 - 0 ENSG00000264319.1 miRNA MIR4801 3 +46498 chr4 HAVANA gene 37244220 37449465 8325.0 + 0 ENSG00000174145.7 protein_coding NWD2 2 OTTHUMG00000157134.2 +46499 chr4 HAVANA gene 37588087 37588875 534.0 - 0 ENSG00000248936.1 antisense AC027607.1 2 OTTHUMG00000160390.1 +46500 chr4 HAVANA gene 37453941 37623495 2770.0 + 0 ENSG00000154274.14 protein_coding C4orf19 2 OTTHUMG00000128580.2 +46501 chr4 HAVANA gene 37590800 37686376 1947.0 - 0 ENSG00000181826.9 protein_coding RELL1 2 OTTHUMG00000160389.5 +46502 chr4 ENSEMBL gene 37699895 37700002 108.0 - 0 ENSG00000207075.1 misc_RNA RF00019 3 +46503 chr4 HAVANA gene 37821361 37821838 478.0 + 0 ENSG00000239532.1 processed_pseudogene AC108022.1 1 OTTHUMG00000157450.1 pseudo_consens +46504 chr4 HAVANA gene 37826633 37862937 3704.0 + 0 ENSG00000169299.13 protein_coding PGM2 2 OTTHUMG00000097813.3 +46505 chr4 HAVANA gene 37866561 37867091 531.0 - 0 ENSG00000279386.1 TEC AC021106.3 2 OTTHUMG00000192165.1 +46506 chr4 HAVANA gene 37868292 37869978 1058.0 + 0 ENSG00000249863.2 processed_pseudogene AC021106.1 1 OTTHUMG00000160411.2 pseudo_consens +46507 chr4 HAVANA gene 37960435 37961125 691.0 + 0 ENSG00000250254.1 protein_coding PTTG2 2 OTTHUMG00000160424.1 overlapping_locus,retrogene +46508 chr4 HAVANA gene 37995494 37996203 710.0 - 0 ENSG00000251332.1 processed_pseudogene AC021106.2 1 OTTHUMG00000160425.1 pseudo_consens +46509 chr4 HAVANA gene 38006784 38007105 322.0 - 0 ENSG00000249649.1 processed_pseudogene MRPS33P2 1 OTTHUMG00000160426.1 pseudo_consens +46510 chr4 HAVANA gene 37891087 38139175 9032.0 + 0 ENSG00000065882.15 protein_coding TBC1D1 1 OTTHUMG00000150302.9 overlapping_locus +46511 chr4 HAVANA gene 38286994 38287491 367.0 + 0 ENSG00000251642.1 lincRNA AC098680.1 2 OTTHUMG00000160427.1 +46512 chr4 HAVANA gene 38366914 38385759 500.0 + 0 ENSG00000248227.1 lincRNA LINC02513 2 OTTHUMG00000160385.1 +46513 chr4 HAVANA gene 38390754 38391675 922.0 + 0 ENSG00000280015.1 TEC AC024023.1 2 OTTHUMG00000176139.1 +46514 chr4 HAVANA gene 38509767 38518056 757.0 + 0 ENSG00000249667.1 lincRNA LINC01259 2 OTTHUMG00000160486.1 +46515 chr4 HAVANA gene 38420662 38523180 2059.0 - 0 ENSG00000249534.1 lincRNA LINC01258 2 OTTHUMG00000160414.2 +46516 chr4 HAVANA gene 38564003 38570671 500.0 + 0 ENSG00000251635.1 lincRNA LINC02278 2 OTTHUMG00000160485.1 +46517 chr4 HAVANA gene 38618265 38619437 376.0 - 0 ENSG00000271958.1 lincRNA AC021860.1 2 OTTHUMG00000185314.1 overlapping_locus +46518 chr4 HAVANA gene 38612701 38664883 4830.0 - 0 ENSG00000231160.9 processed_transcript KLF3-AS1 2 OTTHUMG00000160386.5 overlapping_locus +46519 chr4 HAVANA gene 38664196 38701042 6297.0 + 0 ENSG00000109787.12 protein_coding KLF3 2 OTTHUMG00000097821.3 +46520 chr4 ENSEMBL gene 38758791 38758892 102.0 - 0 ENSG00000222230.1 rRNA_pseudogene RNA5SP158 3 +46521 chr4 HAVANA gene 38772239 38782990 4217.0 - 0 ENSG00000174123.10 protein_coding TLR10 1 OTTHUMG00000128578.3 +46522 chr4 HAVANA gene 38790677 38856817 4535.0 - 0 ENSG00000174125.7 protein_coding TLR1 2 OTTHUMG00000160413.5 overlapping_locus +46523 chr4 HAVANA gene 38823715 38856817 6035.0 - 0 ENSG00000174130.12 protein_coding TLR6 2 OTTHUMG00000128579.4 overlapping_locus +46524 chr4 ENSEMBL gene 38868032 38868127 96.0 + 0 ENSG00000207944.1 miRNA MIR574 3 +46525 chr4 HAVANA gene 38867677 38945739 4871.0 + 0 ENSG00000197712.11 protein_coding FAM114A1 2 OTTHUMG00000128583.4 ncRNA_host +46526 chr4 HAVANA gene 38966744 39032922 2562.0 - 0 ENSG00000121895.7 protein_coding TMEM156 1 OTTHUMG00000128582.4 +46527 chr4 HAVANA gene 39112677 39126818 946.0 - 0 ENSG00000249207.1 antisense AC079921.1 2 OTTHUMG00000160443.1 +46528 chr4 HAVANA gene 39045039 39126857 5144.0 + 0 ENSG00000109790.16 protein_coding KLHL5 1 OTTHUMG00000097819.3 +46529 chr4 HAVANA gene 39133913 39135608 455.0 + 0 ENSG00000249685.1 lincRNA AC079921.2 2 OTTHUMG00000160465.1 +46530 chr4 HAVANA gene 39182404 39285810 8873.0 + 0 ENSG00000157796.17 protein_coding WDR19 2 OTTHUMG00000160466.4 +46531 chr4 ENSEMBL gene 39297605 39297711 107.0 - 0 ENSG00000206675.1 snRNA RNU6-32P 3 +46532 chr4 HAVANA gene 39287456 39366375 6719.0 - 0 ENSG00000035928.15 protein_coding RFC1 2 OTTHUMG00000099363.3 ncRNA_host +46533 chr4 ENSEMBL gene 39399149 39399248 100.0 + 0 ENSG00000222592.1 snRNA RNU6-887P 3 +46534 chr4 ENSEMBL gene 39411910 39411974 65.0 + 0 ENSG00000264621.1 miRNA MIR5591 3 +46535 chr4 ENSEMBL gene 39441665 39441764 100.0 + 0 ENSG00000238797.1 misc_RNA RF00019 3 +46536 chr4 HAVANA gene 39406853 39451536 6082.0 + 0 ENSG00000134962.6 protein_coding KLB 2 OTTHUMG00000128577.1 ncRNA_host +46537 chr4 HAVANA gene 39452521 39458949 5022.0 - 0 ENSG00000163682.16 protein_coding RPL9 2 OTTHUMG00000099367.7 +46538 chr4 HAVANA gene 39480255 39481905 1651.0 + 0 ENSG00000224097.5 transcribed_processed_pseudogene AC021148.1 1 OTTHUMG00000160539.2 pseudo_consens +46539 chr4 HAVANA gene 39458587 39485109 11735.0 + 0 ENSG00000121897.14 protein_coding LIAS 1 OTTHUMG00000099369.4 +46540 chr4 HAVANA gene 39498755 39528311 4045.0 - 0 ENSG00000109814.11 protein_coding UGDH 1 OTTHUMG00000099371.5 +46541 chr4 HAVANA gene 39528019 39594707 2787.0 + 0 ENSG00000249348.1 antisense UGDH-AS1 2 OTTHUMG00000160540.2 +46542 chr4 ENSEMBL gene 39621012 39621073 62.0 + 0 ENSG00000252796.1 snRNA RNU7-11P 3 +46543 chr4 HAVANA gene 39546330 39639090 6721.0 - 0 ENSG00000163683.11 protein_coding SMIM14 1 OTTHUMG00000128581.7 +46544 chr4 HAVANA gene 39639140 39666644 2301.0 + 0 ENSG00000255458.5 lincRNA AC108471.2 1 OTTHUMG00000166290.4 fragmented_locus +46545 chr4 ENSEMBL gene 39710085 39710176 92.0 - 0 ENSG00000252975.1 misc_RNA RF00019 3 +46546 chr4 HAVANA gene 39713842 39714451 287.0 - 0 ENSG00000249019.2 processed_pseudogene AC108471.1 1 OTTHUMG00000160544.2 pseudo_consens +46547 chr4 ENSEMBL gene 39761000 39761298 299.0 + 0 ENSG00000243260.3 misc_RNA RN7SL558P 3 +46548 chr4 HAVANA gene 39770081 39771371 1122.0 - 0 ENSG00000180610.10 processed_pseudogene ZBTB12BP 2 OTTHUMG00000160580.1 +46549 chr4 HAVANA gene 39698044 39782792 5245.0 + 0 ENSG00000078140.13 protein_coding UBE2K 1 OTTHUMG00000160543.2 ncRNA_host +46550 chr4 HAVANA gene 39932454 39933561 632.0 + 0 ENSG00000271278.1 processed_pseudogene ELOCP33 1 OTTHUMG00000184983.1 pseudo_consens +46551 chr4 ENSEMBL gene 39936753 39936855 103.0 + 0 ENSG00000252970.1 rRNA_pseudogene RNA5SP159 3 +46552 chr4 HAVANA gene 39973128 39973442 315.0 - 0 ENSG00000250568.1 processed_pseudogene AC098591.2 2 OTTHUMG00000160581.1 overlapping_locus +46553 chr4 HAVANA gene 39973444 39974338 591.0 + 0 ENSG00000231707.4 processed_pseudogene PABPC1P1 2 OTTHUMG00000160579.2 +46554 chr4 HAVANA gene 39822863 39977956 12204.0 - 0 ENSG00000121892.14 protein_coding PDS5A 2 OTTHUMG00000160582.2 overlapping_locus +46555 chr4 HAVANA gene 40020240 40021517 1278.0 + 0 ENSG00000249064.1 processed_pseudogene KRT18P25 1 OTTHUMG00000160583.1 pseudo_consens +46556 chr4 HAVANA gene 40042917 40057199 1613.0 - 0 ENSG00000205794.4 transcribed_processed_pseudogene AC098591.1 1 OTTHUMG00000160576.3 pseudo_consens +46557 chr4 ENSEMBL gene 40077884 40077982 99.0 + 0 ENSG00000200455.1 snRNA RNU6-1112P 3 +46558 chr4 ENSEMBL gene 40082983 40083106 124.0 + 0 ENSG00000201863.1 snoRNA RF00432 3 +46559 chr4 HAVANA gene 40142198 40142365 168.0 - 0 ENSG00000248977.1 processed_pseudogene AC095057.1 1 OTTHUMG00000160578.1 pseudo_consens +46560 chr4 HAVANA gene 40056826 40158252 9835.0 + 0 ENSG00000078177.13 protein_coding N4BP2 1 OTTHUMG00000128599.4 ncRNA_host +46561 chr4 HAVANA gene 40166675 40167831 1157.0 + 0 ENSG00000260296.1 sense_overlapping AC095057.3 2 OTTHUMG00000176303.1 +46562 chr4 HAVANA gene 40191053 40246967 6608.0 + 0 ENSG00000168421.12 protein_coding RHOH 2 OTTHUMG00000099373.5 retrogene +46563 chr4 HAVANA gene 40265472 40266457 553.0 + 0 ENSG00000250338.1 lincRNA AC095057.2 1 OTTHUMG00000160577.1 +46564 chr4 HAVANA gene 40316485 40330419 957.0 + 0 ENSG00000249241.1 lincRNA LINC02265 2 OTTHUMG00000160407.1 +46565 chr4 HAVANA gene 40335329 40355217 3168.0 + 0 ENSG00000174343.5 protein_coding CHRNA9 2 OTTHUMG00000099375.2 +46566 chr4 ENSEMBL gene 40377452 40377513 62.0 - 0 ENSG00000239010.1 snRNA RNU7-74P 3 +46567 chr4 HAVANA gene 40426119 40427585 862.0 + 0 ENSG00000250893.1 antisense AC098869.2 2 OTTHUMG00000160753.1 +46568 chr4 HAVANA gene 40491733 40492024 292.0 + 0 ENSG00000242197.2 processed_pseudogene AC098869.1 1 OTTHUMG00000157452.2 pseudo_consens +46569 chr4 ENSEMBL gene 40502040 40502119 80.0 - 0 ENSG00000263642.1 miRNA MIR4802 3 +46570 chr4 HAVANA gene 40423267 40630875 8544.0 - 0 ENSG00000163694.14 protein_coding RBM47 2 OTTHUMG00000128598.4 ncRNA_host +46571 chr4 HAVANA gene 40786110 40786710 601.0 + 0 ENSG00000248780.1 processed_pseudogene ARL4AP2 2 OTTHUMG00000160406.1 overlapping_locus +46572 chr4 HAVANA gene 40749897 40809985 4728.0 + 0 ENSG00000179299.16 protein_coding NSUN7 1 OTTHUMG00000128597.4 overlapping_locus +46573 chr4 HAVANA gene 40812779 40826151 477.0 + 0 ENSG00000250906.1 antisense AC131953.1 2 OTTHUMG00000160739.1 +46574 chr4 ENSEMBL gene 40826655 40826765 111.0 - 0 ENSG00000207195.1 misc_RNA RF00019 3 +46575 chr4 ENSEMBL gene 40990154 40990273 120.0 + 0 ENSG00000201736.1 rRNA_pseudogene RNA5SP160 3 +46576 chr4 ENSEMBL gene 41084607 41084713 107.0 + 0 ENSG00000199790.1 snRNA RNU6-836P 3 +46577 chr4 ENSEMBL gene 41113942 41114045 104.0 + 0 ENSG00000207198.1 snRNA RNU6-1195P 3 +46578 chr4 HAVANA gene 40810027 41216714 12956.0 - 0 ENSG00000163697.16 protein_coding APBB2 2 OTTHUMG00000160416.11 ncRNA_host +46579 chr4 HAVANA gene 41220074 41256727 880.0 - 0 ENSG00000251173.1 antisense UCHL1-AS1 1 OTTHUMG00000160405.3 +46580 chr4 HAVANA gene 41256413 41268455 2282.0 + 0 ENSG00000154277.12 protein_coding UCHL1 1 OTTHUMG00000099377.16 +46581 chr4 ENSEMBL gene 41303237 41303337 101.0 - 0 ENSG00000207481.1 misc_RNA RF00019 3 +46582 chr4 HAVANA gene 41389115 41389593 479.0 + 0 ENSG00000239627.3 processed_pseudogene RPL12P20 1 OTTHUMG00000157453.3 pseudo_consens,overlapping_locus +46583 chr4 HAVANA gene 41688858 41692797 435.0 - 0 ENSG00000249216.1 antisense AC105389.2 1 OTTHUMG00000160625.1 +46584 chr4 HAVANA gene 41359607 41700044 10862.0 + 0 ENSG00000064042.17 protein_coding LIMCH1 1 OTTHUMG00000160575.7 overlapping_locus +46585 chr4 HAVANA gene 41722538 41723512 618.0 - 0 ENSG00000249081.1 unprocessed_pseudogene OR5M14P 2 OTTHUMG00000160534.1 +46586 chr4 HAVANA gene 41744082 41748970 3092.0 - 0 ENSG00000109132.6 protein_coding PHOX2B 2 OTTHUMG00000099379.3 +46587 chr4 HAVANA gene 41750345 41757341 561.0 + 0 ENSG00000249122.1 lincRNA AC105389.1 1 OTTHUMG00000160525.1 overlapping_locus +46588 chr4 ENSEMBL gene 41771945 41772103 159.0 - 0 ENSG00000200338.1 snRNA RNU1-49P 3 +46589 chr4 HAVANA gene 41748293 41824119 907.0 + 0 ENSG00000250467.1 antisense AC105389.3 2 OTTHUMG00000160532.1 overlapping_locus +46590 chr4 HAVANA gene 41842154 41843950 552.0 - 0 ENSG00000249745.1 processed_pseudogene HMGB1P28 1 OTTHUMG00000160533.1 pseudo_consens +46591 chr4 HAVANA gene 41872747 41882955 3082.0 - 0 ENSG00000245870.3 lincRNA LINC00682 2 OTTHUMG00000160528.3 +46592 chr4 HAVANA gene 41883060 41894579 825.0 - 0 ENSG00000249771.1 lincRNA AC108210.1 1 OTTHUMG00000160529.1 +46593 chr4 HAVANA gene 41924180 41924380 201.0 + 0 ENSG00000249887.1 processed_pseudogene AC108210.2 1 OTTHUMG00000160536.1 pseudo_consens +46594 chr4 HAVANA gene 41935120 41960572 8240.0 + 0 ENSG00000109133.12 protein_coding TMEM33 1 OTTHUMG00000099381.5 +46595 chr4 HAVANA gene 41981696 41986467 4772.0 + 0 ENSG00000182308.6 protein_coding DCAF4L1 2 OTTHUMG00000160527.1 retrogene +46596 chr4 HAVANA gene 41988741 41989237 497.0 - 0 ENSG00000272862.1 lincRNA AC106052.1 2 OTTHUMG00000186264.1 +46597 chr4 HAVANA gene 42029209 42030123 915.0 + 0 ENSG00000249212.1 unprocessed_pseudogene ATP1B1P1 1 OTTHUMG00000160530.1 pseudo_consens,overlapping_locus +46598 chr4 HAVANA gene 41990472 42090457 7225.0 + 0 ENSG00000014824.13 protein_coding SLC30A9 2 OTTHUMG00000099387.4 overlapping_locus +46599 chr4 HAVANA gene 42110938 42152878 8765.0 - 0 ENSG00000188848.15 protein_coding BEND4 2 OTTHUMG00000160531.4 +46600 chr4 HAVANA gene 42151028 42268110 2324.0 + 0 ENSG00000285454.1 lincRNA AC111006.1 2 OTTHUMG00000192468.1 +46601 chr4 HAVANA gene 42281830 42391268 1326.0 - 0 ENSG00000250781.1 antisense AC024022.1 2 OTTHUMG00000161041.1 +46602 chr4 HAVANA gene 42397839 42402487 1971.0 + 0 ENSG00000178343.4 protein_coding SHISA3 2 OTTHUMG00000161043.1 +46603 chr4 HAVANA gene 42471810 42472380 571.0 + 0 ENSG00000240167.1 processed_pseudogene RPS7P7 1 OTTHUMG00000157459.1 pseudo_consens +46604 chr4 HAVANA gene 42561457 42562425 969.0 - 0 ENSG00000248283.2 processed_pseudogene CCNL2P1 1 OTTHUMG00000162545.2 pseudo_consens,overlapping_locus +46605 chr4 HAVANA gene 42408373 42657105 11199.0 - 0 ENSG00000124406.16 protein_coding ATP8A1 2 OTTHUMG00000099403.3 overlapping_locus +46606 chr4 HAVANA gene 42657496 42657928 433.0 + 0 ENSG00000260519.1 antisense AC096734.2 2 OTTHUMG00000176274.1 +46607 chr4 HAVANA gene 42706107 42707335 1128.0 + 0 ENSG00000251517.1 lincRNA AC096734.1 2 OTTHUMG00000161042.1 +46608 chr4 ENSEMBL gene 42892396 42892618 223.0 + 0 ENSG00000252595.1 misc_RNA RN7SKP82 3 +46609 chr4 HAVANA gene 42893267 43030658 991.0 + 0 ENSG00000215203.2 protein_coding GRXCR1 2 OTTHUMG00000160434.1 +46610 chr4 HAVANA gene 43133867 43234956 606.0 + 0 ENSG00000248939.1 lincRNA AC111198.1 2 OTTHUMG00000160432.1 +46611 chr4 HAVANA gene 43340875 43345600 681.0 + 0 ENSG00000250657.1 processed_transcript AC097451.1 2 OTTHUMG00000160433.2 +46612 chr4 HAVANA gene 43388157 43388437 281.0 + 0 ENSG00000277096.1 processed_pseudogene AC098590.2 2 OTTHUMG00000187576.1 +46613 chr4 HAVANA gene 43410041 43410937 897.0 - 0 ENSG00000213851.3 processed_pseudogene AC098590.1 1 OTTHUMG00000157460.1 pseudo_consens +46614 chr4 HAVANA gene 43457527 43492543 582.0 - 0 ENSG00000248143.1 lincRNA LINC02383 2 OTTHUMG00000160455.1 +46615 chr4 HAVANA gene 43586328 43588097 1770.0 + 0 ENSG00000251501.1 processed_pseudogene AC114774.1 2 OTTHUMG00000160445.1 +46616 chr4 ENSEMBL gene 43598544 43598844 301.0 - 0 ENSG00000239464.3 misc_RNA RN7SL691P 3 +46617 chr4 ENSEMBL gene 43863274 43863549 276.0 + 0 ENSG00000239679.3 misc_RNA RN7SL193P 3 +46618 chr4 HAVANA gene 43898962 43899351 390.0 + 0 ENSG00000124399.4 processed_pseudogene NDUFB4P12 1 OTTHUMG00000160452.1 pseudo_consens +46619 chr4 HAVANA gene 43980006 43981620 449.0 - 0 ENSG00000250863.1 lincRNA AC110799.1 2 OTTHUMG00000160444.1 +46620 chr4 HAVANA gene 44016861 44022063 2823.0 + 0 ENSG00000251350.1 lincRNA LINC02475 2 OTTHUMG00000160456.2 +46621 chr4 HAVANA gene 44173909 44448807 2704.0 - 0 ENSG00000183783.6 protein_coding KCTD8 2 OTTHUMG00000099409.3 +46622 chr4 HAVANA gene 44533615 44533880 266.0 + 0 ENSG00000251159.1 processed_pseudogene AC093852.1 1 OTTHUMG00000160573.1 pseudo_consens +46623 chr4 HAVANA gene 44622065 44678556 1813.0 - 0 ENSG00000177752.14 protein_coding YIPF7 1 OTTHUMG00000160467.7 +46624 chr4 HAVANA gene 44693946 44694386 441.0 - 0 ENSG00000273369.1 antisense AC096586.2 2 OTTHUMG00000186267.1 overlapping_locus +46625 chr4 HAVANA gene 44678427 44700926 4454.0 + 0 ENSG00000151806.13 protein_coding GUF1 2 OTTHUMG00000128608.10 +46626 chr4 HAVANA gene 44704405 44704965 561.0 + 0 ENSG00000272936.1 antisense AC096586.1 2 OTTHUMG00000186268.1 +46627 chr4 HAVANA gene 44682200 44726595 7150.0 - 0 ENSG00000163281.11 protein_coding GNPDA2 1 OTTHUMG00000099415.6 overlapping_locus +46628 chr4 HAVANA gene 44840380 44841402 1023.0 - 0 ENSG00000249729.2 processed_pseudogene AC093755.1 1 OTTHUMG00000162176.2 pseudo_consens +46629 chr4 HAVANA gene 44944015 44944961 574.0 - 0 ENSG00000248987.2 processed_pseudogene PRDX4P1 1 OTTHUMG00000162177.2 pseudo_consens +46630 chr4 HAVANA gene 44994426 44996022 1597.0 + 0 ENSG00000275959.1 processed_pseudogene AC108467.2 2 OTTHUMG00000187577.1 +46631 chr4 HAVANA gene 45009540 45051652 672.0 + 0 ENSG00000248744.1 lincRNA AC108467.1 2 OTTHUMG00000160568.2 +46632 chr4 HAVANA gene 45323253 45326028 2360.0 - 0 ENSG00000248320.1 processed_pseudogene THAP12P9 1 OTTHUMG00000160567.3 pseudo_consens +46633 chr4 HAVANA gene 45414337 45414910 574.0 - 0 ENSG00000224560.3 processed_pseudogene AC108043.1 1 OTTHUMG00000160566.2 pseudo_consens +46634 chr4 ENSEMBL gene 45480030 45480136 107.0 + 0 ENSG00000200720.1 snRNA RNU6-931P 3 +46635 chr4 ENSEMBL gene 45995119 45995423 305.0 + 0 ENSG00000222257.1 misc_RNA RN7SKP199 3 +46636 chr4 HAVANA gene 46035769 46124081 6785.0 - 0 ENSG00000163285.7 protein_coding GABRG1 2 OTTHUMG00000128609.1 +46637 chr4 HAVANA gene 46243548 46244215 668.0 - 0 ENSG00000260878.1 sense_overlapping AC104072.1 2 OTTHUMG00000176306.1 +46638 chr4 HAVANA gene 46390255 46433188 549.0 + 0 ENSG00000249330.1 antisense AC095060.1 2 OTTHUMG00000160519.2 +46639 chr4 HAVANA gene 46248427 46475230 11930.0 - 0 ENSG00000151834.15 protein_coding GABRA2 1 OTTHUMG00000044266.8 +46640 chr4 ENSEMBL gene 46531237 46531342 106.0 - 0 ENSG00000252243.1 snRNA RNU6-412P 3 +46641 chr4 HAVANA gene 46723830 46724408 579.0 - 0 ENSG00000249936.3 processed_pseudogene RAC1P2 1 OTTHUMG00000160545.1 pseudo_consens +46642 chr4 HAVANA gene 46734827 46909235 807.0 - 0 ENSG00000170516.16 protein_coding COX7B2 2 OTTHUMG00000099423.4 retrogene +46643 chr4 HAVANA gene 46918900 46994407 12131.0 - 0 ENSG00000109158.10 protein_coding GABRA4 2 OTTHUMG00000099431.5 +46644 chr4 HAVANA gene 46993723 47426444 3140.0 + 0 ENSG00000163288.13 protein_coding GABRB1 2 OTTHUMG00000044269.6 +46645 chr4 HAVANA gene 47431960 47438959 7000.0 + 0 ENSG00000260918.1 sense_overlapping AC107398.3 2 OTTHUMG00000175912.2 +46646 chr4 HAVANA gene 47450796 47463719 1766.0 - 0 ENSG00000169019.10 protein_coding COMMD8 2 OTTHUMG00000099435.3 +46647 chr4 HAVANA gene 47463784 47470477 932.0 + 0 ENSG00000282904.1 bidirectional_promoter_lncRNA AC107398.4 2 OTTHUMG00000191559.1 +46648 chr4 HAVANA gene 47490967 47491471 505.0 - 0 ENSG00000242431.2 processed_pseudogene AC107398.1 1 OTTHUMG00000157464.2 pseudo_consens +46649 chr4 HAVANA gene 47556731 47560259 601.0 - 0 ENSG00000248254.1 antisense AC107398.2 2 OTTHUMG00000099437.6 +46650 chr4 HAVANA gene 47485288 47593486 7965.0 + 0 ENSG00000145246.13 protein_coding ATP10D 2 OTTHUMG00000160784.3 +46651 chr4 ENSEMBL gene 47652669 47652743 75.0 + 0 ENSG00000277388.1 miRNA MIR8053 3 +46652 chr4 HAVANA gene 47706372 47706987 616.0 + 0 ENSG00000242262.1 processed_pseudogene AC092597.1 1 OTTHUMG00000157465.1 pseudo_consens +46653 chr4 HAVANA gene 47593998 47838106 10087.0 - 0 ENSG00000145244.11 protein_coding CORIN 1 OTTHUMG00000099441.3 +46654 chr4 HAVANA gene 47840122 47844339 4218.0 - 0 ENSG00000259959.1 lincRNA AC107068.1 2 OTTHUMG00000176325.1 +46655 chr4 HAVANA gene 47831385 47896709 550.0 + 0 ENSG00000282917.1 antisense AC107068.2 2 OTTHUMG00000191558.2 +46656 chr4 HAVANA gene 47847233 47914667 4484.0 - 0 ENSG00000170448.11 protein_coding NFXL1 2 OTTHUMG00000128621.4 +46657 chr4 HAVANA gene 47935977 48016672 3581.0 - 0 ENSG00000198515.13 protein_coding CNGA1 2 OTTHUMG00000160668.11 +46658 chr4 HAVANA gene 47914142 48040173 5983.0 + 0 ENSG00000163293.11 protein_coding NIPAL1 2 OTTHUMG00000128622.10 +46659 chr4 ENSEMBL gene 48106081 48106188 108.0 - 0 ENSG00000200269.1 snRNA RNU6-838P 3 +46660 chr4 ENSEMBL gene 48109353 48109410 58.0 - 0 ENSG00000283499.1 snRNA RF00026 3 +46661 chr4 HAVANA gene 48066393 48134256 3472.0 - 0 ENSG00000074966.10 protein_coding TXK 1 OTTHUMG00000102065.8 ncRNA_host +46662 chr4 ENSEMBL gene 48153434 48153535 102.0 + 0 ENSG00000202014.1 misc_RNA RF00019 3 +46663 chr4 HAVANA gene 48135783 48269864 4030.0 - 0 ENSG00000135605.12 protein_coding TEC 2 OTTHUMG00000128623.8 +46664 chr4 HAVANA gene 48341322 48426212 6524.0 + 0 ENSG00000109171.14 protein_coding SLAIN2 2 OTTHUMG00000161701.8 +46665 chr4 HAVANA gene 48483343 48489196 1790.0 + 0 ENSG00000145248.6 protein_coding SLC10A4 2 OTTHUMG00000102092.5 +46666 chr4 HAVANA gene 48490252 48494389 1460.0 + 0 ENSG00000182223.7 protein_coding ZAR1 2 OTTHUMG00000102093.6 +46667 chr4 ENSEMBL gene 48574453 48574520 68.0 - 0 ENSG00000251722.1 snRNA RNU5E-3P 3 +46668 chr4 HAVANA gene 48497361 48780322 18152.0 - 0 ENSG00000075539.14 protein_coding FRYL 1 OTTHUMG00000160608.15 ncRNA_host +46669 chr4 HAVANA gene 48852008 48860203 265.0 - 0 ENSG00000248256.1 antisense OCIAD1-AS1 2 OTTHUMG00000163197.1 +46670 chr4 HAVANA gene 48805212 48861817 4714.0 + 0 ENSG00000109180.14 protein_coding OCIAD1 1 OTTHUMG00000102095.19 +46671 chr4 HAVANA gene 48885019 48906937 2483.0 - 0 ENSG00000145247.11 protein_coding OCIAD2 2 OTTHUMG00000128626.34 +46672 chr4 ENSEMBL gene 48932755 48932854 100.0 - 0 ENSG00000252913.1 snRNA RNU6-158P 3 +46673 chr4 HAVANA gene 48936582 48936880 299.0 + 0 ENSG00000251334.2 processed_pseudogene AC020593.1 2 OTTHUMG00000163194.2 +46674 chr4 HAVANA gene 49016682 49017154 473.0 - 0 ENSG00000225455.3 processed_pseudogene TPI1P4 1 OTTHUMG00000160137.2 pseudo_consens +46675 chr4 HAVANA gene 48986247 49062081 3138.0 + 0 ENSG00000109182.11 protein_coding CWH43 1 OTTHUMG00000128627.7 +46676 chr4 HAVANA gene 49203171 49203726 556.0 - 0 ENSG00000249828.2 processed_pseudogene AC118282.3 2 OTTHUMG00000163193.2 +46677 chr4 HAVANA gene 49212251 49212624 374.0 - 0 ENSG00000249079.1 processed_pseudogene AC118282.2 2 OTTHUMG00000163196.1 +46678 chr4 HAVANA gene 49229573 49231284 1712.0 + 0 ENSG00000280043.1 TEC AC118282.4 2 OTTHUMG00000176309.1 +46679 chr4 HAVANA gene 49233289 49233965 677.0 - 0 ENSG00000250016.2 processed_pseudogene SNX18P23 1 OTTHUMG00000163198.2 pseudo_consens +46680 chr4 HAVANA gene 49238032 49245419 765.0 - 0 ENSG00000237961.4 processed_pseudogene AC118282.1 2 OTTHUMG00000160609.2 +46681 chr4 HAVANA gene 49246021 49246538 518.0 + 0 ENSG00000268736.1 processed_pseudogene MTCO3P39 2 OTTHUMG00000163199.2 +46682 chr4 HAVANA gene 49246601 49246915 243.0 + 0 ENSG00000248946.2 processed_pseudogene MTND3P22 2 OTTHUMG00000163192.2 +46683 chr4 HAVANA gene 49486926 49489554 670.0 - 0 ENSG00000248583.1 unprocessed_pseudogene AC119751.3 2 OTTHUMG00000160594.1 +46684 chr4 HAVANA gene 49502145 49506022 1330.0 - 0 ENSG00000251056.1 unprocessed_pseudogene ANKRD20A17P 2 OTTHUMG00000160600.1 +46685 chr4 HAVANA gene 49507764 49508806 770.0 - 0 ENSG00000250769.2 processed_pseudogene AC119751.5 2 OTTHUMG00000160597.2 +46686 chr4 HAVANA gene 49523648 49523857 210.0 - 0 ENSG00000248532.2 processed_pseudogene AC119751.2 2 OTTHUMG00000160592.2 +46687 chr4 HAVANA gene 49524030 49524185 156.0 - 0 ENSG00000269848.1 processed_pseudogene AC119751.8 2 OTTHUMG00000182824.1 +46688 chr4 HAVANA gene 49548564 49548855 245.0 - 0 ENSG00000268967.1 processed_pseudogene AC119751.7 2 OTTHUMG00000182825.1 +46689 chr4 HAVANA gene 49548918 49549435 518.0 - 0 ENSG00000268391.1 processed_pseudogene MTCO3P42 2 OTTHUMG00000160595.2 +46690 chr4 HAVANA gene 49550032 49557400 765.0 + 0 ENSG00000232471.3 unprocessed_pseudogene AC119751.1 2 OTTHUMG00000160599.1 +46691 chr4 HAVANA gene 49561285 49561470 186.0 - 0 ENSG00000251630.1 processed_pseudogene AC119751.6 2 OTTHUMG00000160596.1 +46692 chr4 HAVANA gene 49561479 49562149 671.0 + 0 ENSG00000251539.1 processed_pseudogene SNX18P24 1 OTTHUMG00000160598.1 pseudo_consens +46693 chr4 HAVANA gene 49579833 49580189 357.0 + 0 ENSG00000250753.2 processed_pseudogene AC119751.4 2 OTTHUMG00000160590.2 +46694 chr4 HAVANA gene 49588772 49589529 758.0 + 0 ENSG00000249337.2 processed_pseudogene SNX18P25 2 OTTHUMG00000160593.2 +46695 chr4 HAVANA gene 51865050 51865535 486.0 - 0 ENSG00000250473.1 processed_pseudogene DUTP7 1 OTTHUMG00000160621.1 pseudo_consens +46696 chr4 HAVANA gene 51843000 51916837 7625.0 + 0 ENSG00000109184.14 protein_coding DCUN1D4 2 OTTHUMG00000128700.7 +46697 chr4 HAVANA gene 51918772 51919381 610.0 + 0 ENSG00000272576.1 lincRNA AC027271.1 2 OTTHUMG00000186275.1 +46698 chr4 HAVANA gene 51978079 51978372 294.0 - 0 ENSG00000243929.1 processed_pseudogene AC104784.1 1 OTTHUMG00000157468.1 pseudo_consens +46699 chr4 HAVANA gene 51993702 52017620 3327.0 - 0 ENSG00000188993.3 protein_coding LRRC66 2 OTTHUMG00000160623.1 +46700 chr4 HAVANA gene 52020706 52038482 4541.0 - 0 ENSG00000163069.12 protein_coding SGCB 2 OTTHUMG00000128697.2 +46701 chr4 HAVANA gene 52044805 52046954 612.0 + 0 ENSG00000251040.1 lincRNA LINC02480 1 OTTHUMG00000160622.1 +46702 chr4 HAVANA gene 52051331 52097292 4941.0 + 0 ENSG00000163071.10 protein_coding SPATA18 1 OTTHUMG00000128698.2 +46703 chr4 HAVANA gene 52440494 52441535 1042.0 - 0 ENSG00000251286.2 processed_pseudogene AC097522.1 1 OTTHUMG00000160638.2 pseudo_consens +46704 chr4 ENSEMBL gene 52494849 52494952 104.0 + 0 ENSG00000199924.1 snRNA RNU6-1252P 3 +46705 chr4 HAVANA gene 52590972 52659335 8917.0 - 0 ENSG00000109189.12 protein_coding USP46 2 OTTHUMG00000160640.3 +46706 chr4 HAVANA gene 52659406 52661668 1048.0 + 0 ENSG00000248866.1 lincRNA USP46-AS1 2 OTTHUMG00000160639.1 +46707 chr4 HAVANA gene 52680609 52692649 1741.0 + 0 ENSG00000260120.1 lincRNA AC104066.2 2 OTTHUMG00000176307.1 +46708 chr4 ENSEMBL gene 52712682 52712747 66.0 + 0 ENSG00000264585.1 miRNA MIR4449 3 +46709 chr4 ENSEMBL gene 52713249 52713370 122.0 + 0 ENSG00000212588.1 snoRNA SNORA26 3 +46710 chr4 HAVANA gene 52712404 52720351 2285.0 + 0 ENSG00000226950.6 processed_transcript DANCR 2 OTTHUMG00000154670.3 ncRNA_host +46711 chr4 HAVANA gene 52720081 52720831 751.0 - 0 ENSG00000248375.1 processed_pseudogene AC104066.1 2 OTTHUMG00000160637.1 +46712 chr4 ENSEMBL gene 52748137 52748259 123.0 + 0 ENSG00000212490.1 snoRNA RF00568 3 +46713 chr4 HAVANA gene 52722618 52751640 4077.0 - 0 ENSG00000226887.7 protein_coding ERVMER34-1 2 OTTHUMG00000150366.3 +46714 chr4 ENSEMBL gene 52786537 52786638 102.0 + 0 ENSG00000199901.1 misc_RNA RF00019 3 +46715 chr4 HAVANA gene 52789994 52815464 727.0 + 0 ENSG00000250302.1 lincRNA LINC01618 2 OTTHUMG00000160696.2 +46716 chr4 HAVANA gene 52862290 52866835 2472.0 + 0 ENSG00000128045.6 protein_coding RASL11B 2 OTTHUMG00000102097.4 +46717 chr4 HAVANA gene 52945649 52958087 4840.0 + 0 ENSG00000248115.1 antisense AC023154.1 2 OTTHUMG00000160692.1 +46718 chr4 ENSEMBL gene 53265461 53265567 107.0 - 0 ENSG00000207385.1 snRNA RNU6-310P 3 +46719 chr4 HAVANA gene 52872982 53366075 3185.0 - 0 ENSG00000184178.15 protein_coding SCFD2 1 OTTHUMG00000160588.6 ncRNA_host +46720 chr4 HAVANA gene 53377643 53460861 5636.0 + 0 ENSG00000145216.15 protein_coding FIP1L1 1 OTTHUMG00000128701.3 overlapping_locus +46721 chr4 HAVANA gene 53496400 53549578 1381.0 + 0 ENSG00000250930.5 antisense LNX1-AS1 1 OTTHUMG00000160644.1 overlapping_locus +46722 chr4 HAVANA gene 53575713 53576387 675.0 + 0 ENSG00000173966.7 processed_pseudogene AC095040.1 1 OTTHUMG00000160649.1 pseudo_consens,overlapping_locus +46723 chr4 HAVANA gene 53592956 53604047 887.0 + 0 ENSG00000248494.1 sense_intronic LNX1-AS2 2 OTTHUMG00000160646.1 overlapping_locus +46724 chr4 HAVANA gene 53459301 53701405 5725.0 - 0 ENSG00000072201.13 protein_coding LNX1 2 OTTHUMG00000102099.4 +46725 chr4 HAVANA gene 53659208 53737156 3095.0 + 0 ENSG00000249341.1 sense_intronic AC124017.1 2 OTTHUMG00000160650.1 overlapping_locus +46726 chr4 HAVANA gene 53899871 53916835 835.0 + 0 ENSG00000249706.1 sense_intronic AC105384.1 1 OTTHUMG00000160643.1 overlapping_locus +46727 chr4 HAVANA gene 53927499 53928138 640.0 - 0 ENSG00000250815.1 processed_pseudogene AC105384.2 1 OTTHUMG00000160641.1 pseudo_consens +46728 chr4 HAVANA gene 53986587 53987058 472.0 - 0 ENSG00000229585.4 processed_pseudogene RPL21P44 1 OTTHUMG00000157449.3 pseudo_consens +46729 chr4 HAVANA gene 53997415 53997712 298.0 - 0 ENSG00000272650.1 lincRNA AC110792.3 2 OTTHUMG00000186276.1 +46730 chr4 HAVANA gene 54059597 54061210 1614.0 + 0 ENSG00000269506.2 antisense AC110792.2 2 OTTHUMG00000187187.1 overlapping_locus +46731 chr4 HAVANA gene 54009789 54064690 1318.0 - 0 ENSG00000109220.10 protein_coding CHIC2 2 OTTHUMG00000102101.2 +46732 chr4 HAVANA gene 54076625 54076848 224.0 + 0 ENSG00000251105.1 processed_pseudogene AC110792.1 1 OTTHUMG00000160647.1 pseudo_consens,overlapping_locus +46733 chr4 HAVANA gene 54086926 54087783 858.0 + 0 ENSG00000250147.1 processed_pseudogene MORF4L2P1 1 OTTHUMG00000160642.1 pseudo_consens,overlapping_locus +46734 chr4 HAVANA gene 54099523 54102505 1926.0 + 0 ENSG00000180613.10 protein_coding GSX2 1 OTTHUMG00000128696.3 overlapping_locus +46735 chr4 HAVANA gene 54221126 54221472 347.0 + 0 ENSG00000242670.1 processed_pseudogene RPL22P13 1 OTTHUMG00000157470.1 pseudo_consens,overlapping_locus +46736 chr4 HAVANA gene 53377839 54295272 2550.0 + 0 ENSG00000282278.1 protein_coding AC058822.1 2 OTTHUMG00000190741.2 overlapping_locus +46737 chr4 HAVANA gene 54229097 54298247 9732.0 + 0 ENSG00000134853.11 protein_coding PDGFRA 2 OTTHUMG00000128699.5 overlapping_locus +46738 chr4 HAVANA gene 54332892 54355954 474.0 + 0 ENSG00000248184.1 lincRNA LINC02283 2 OTTHUMG00000160645.1 +46739 chr4 HAVANA gene 54376002 54376752 540.0 + 0 ENSG00000248518.1 lincRNA AC098587.1 2 OTTHUMG00000160648.1 +46740 chr4 HAVANA gene 54440502 54446723 624.0 - 0 ENSG00000251264.1 lincRNA AC098868.1 2 OTTHUMG00000160611.1 +46741 chr4 HAVANA gene 54603211 54607131 2216.0 - 0 ENSG00000250456.1 lincRNA LINC02260 2 OTTHUMG00000161130.1 +46742 chr4 HAVANA gene 54657918 54740715 5563.0 + 0 ENSG00000157404.15 protein_coding KIT 1 OTTHUMG00000128713.3 +46743 chr4 HAVANA gene 54836161 54845402 732.0 - 0 ENSG00000249727.1 lincRNA AC097494.1 2 OTTHUMG00000160615.1 +46744 chr4 HAVANA gene 54845568 54859241 465.0 + 0 ENSG00000251256.1 lincRNA LINC02358 2 OTTHUMG00000160614.1 +46745 chr4 HAVANA gene 54943630 54956818 422.0 + 0 ENSG00000248317.1 lincRNA AC111194.1 2 OTTHUMG00000160654.2 +46746 chr4 HAVANA gene 54976159 54976371 213.0 - 0 ENSG00000244422.3 processed_pseudogene RPL38P3 1 OTTHUMG00000157473.3 pseudo_consens +46747 chr4 ENSEMBL gene 55031965 55032071 107.0 - 0 ENSG00000252815.1 snRNA RNU6-410P 3 +46748 chr4 ENSEMBL gene 55063738 55064026 289.0 + 0 ENSG00000244034.3 misc_RNA RN7SL424P 3 +46749 chr4 HAVANA gene 55053060 55092534 455.0 + 0 ENSG00000250646.1 antisense AC111194.2 2 OTTHUMG00000160651.2 ncRNA_host +46750 chr4 HAVANA gene 55078259 55125595 6563.0 - 0 ENSG00000128052.9 protein_coding KDR 2 OTTHUMG00000128734.6 +46751 chr4 ENSEMBL gene 55215624 55215919 296.0 - 0 ENSG00000239545.3 misc_RNA RN7SL822P 3 +46752 chr4 HAVANA gene 55219344 55219973 630.0 + 0 ENSG00000250812.2 processed_pseudogene AC021220.1 1 OTTHUMG00000160656.2 pseudo_consens +46753 chr4 ENSEMBL gene 55294490 55294598 109.0 + 0 ENSG00000206839.1 snRNA RNU6-746P 3 +46754 chr4 HAVANA gene 55313011 55313924 553.0 - 0 ENSG00000250464.1 processed_pseudogene LRRC34P2 1 OTTHUMG00000160652.2 pseudo_consens +46755 chr4 HAVANA gene 55351812 55352408 597.0 - 0 ENSG00000251111.2 processed_pseudogene FCF1P8 1 OTTHUMG00000160653.2 pseudo_consens +46756 chr4 HAVANA gene 55346109 55373096 4420.0 + 0 ENSG00000128039.10 protein_coding SRD5A3 2 OTTHUMG00000128733.2 +46757 chr4 HAVANA gene 55387949 55388271 323.0 + 0 ENSG00000273257.1 lincRNA AC069200.1 2 OTTHUMG00000186277.1 +46758 chr4 HAVANA gene 55363971 55395847 5148.0 - 0 ENSG00000249700.8 processed_transcript SRD5A3-AS1 2 OTTHUMG00000160655.8 +46759 chr4 ENSEMBL gene 55412636 55412738 103.0 + 0 ENSG00000239040.1 misc_RNA RF00019 3 +46760 chr4 HAVANA gene 55395957 55453397 7045.0 + 0 ENSG00000134851.12 protein_coding TMEM165 2 OTTHUMG00000128735.6 ncRNA_host +46761 chr4 ENSEMBL gene 55501595 55501708 114.0 - 0 ENSG00000238585.1 misc_RNA RF00019 3 +46762 chr4 ENSEMBL gene 55540502 55540835 334.0 - 0 ENSG00000223305.1 misc_RNA RN7SKP30 3 +46763 chr4 HAVANA gene 55427903 55547138 11762.0 - 0 ENSG00000134852.14 protein_coding CLOCK 2 OTTHUMG00000102141.7 ncRNA_host +46764 chr4 HAVANA gene 55547112 55547889 778.0 + 0 ENSG00000272969.1 antisense AC024243.1 2 OTTHUMG00000186305.1 +46765 chr4 HAVANA gene 55556525 55592212 861.0 - 0 ENSG00000163440.11 protein_coding PDCL2 2 OTTHUMG00000160674.1 +46766 chr4 HAVANA gene 55595229 55636698 975.0 - 0 ENSG00000109255.11 protein_coding NMU 2 OTTHUMG00000102161.4 +46767 chr4 ENSEMBL gene 55798636 55798731 96.0 + 0 ENSG00000251923.1 snRNA RNU6-276P 3 +46768 chr4 HAVANA gene 55819819 55837487 863.0 + 0 ENSG00000250821.2 protein_coding EXOC1L 2 OTTHUMG00000160694.2 +46769 chr4 ENSEMBL gene 55885595 55885701 107.0 + 0 ENSG00000202358.1 snRNA RNU6-652P 3 +46770 chr4 HAVANA gene 55853616 55905034 5347.0 + 0 ENSG00000090989.17 protein_coding EXOC1 2 OTTHUMG00000102165.4 ncRNA_host +46771 chr4 HAVANA gene 55948871 56033363 8640.0 + 0 ENSG00000174799.10 protein_coding CEP135 2 OTTHUMG00000160748.2 +46772 chr4 ENSEMBL gene 56097390 56097504 115.0 + 0 ENSG00000200741.1 rRNA_pseudogene RNA5SP161 3 +46773 chr4 ENSEMBL gene 56288485 56288584 100.0 - 0 ENSG00000252489.1 snRNA RNU6-197P 3 +46774 chr4 HAVANA gene 56320719 56321334 616.0 - 0 ENSG00000250324.2 processed_pseudogene MRPL22P1 1 OTTHUMG00000160812.2 pseudo_consens +46775 chr4 HAVANA gene 56049073 56328625 6489.0 + 0 ENSG00000109265.14 protein_coding KIAA1211 2 OTTHUMG00000160749.7 +46776 chr4 HAVANA gene 56356135 56356932 798.0 + 0 ENSG00000242083.2 processed_pseudogene RPL7AP31 1 OTTHUMG00000157477.2 pseudo_consens +46777 chr4 HAVANA gene 56338287 56387508 4654.0 - 0 ENSG00000157426.13 protein_coding AASDH 1 OTTHUMG00000128841.5 +46778 chr4 HAVANA gene 56387625 56388153 529.0 + 0 ENSG00000269921.1 lincRNA AC068620.1 2 OTTHUMG00000183997.1 +46779 chr4 HAVANA gene 56396312 56396871 560.0 + 0 ENSG00000270147.1 lincRNA AC068620.2 2 OTTHUMG00000183998.1 +46780 chr4 HAVANA gene 56410516 56431548 4585.0 + 0 ENSG00000283156.1 transcribed_unprocessed_pseudogene AC068620.3 2 OTTHUMG00000160757.2 +46781 chr4 HAVANA gene 56393362 56435615 5439.0 - 0 ENSG00000128059.8 protein_coding PPAT 2 OTTHUMG00000128842.2 +46782 chr4 HAVANA gene 56435741 56464579 7517.0 + 0 ENSG00000128050.8 protein_coding PAICS 1 OTTHUMG00000160957.4 +46783 chr4 HAVANA gene 56467336 56503681 6426.0 + 0 ENSG00000174780.16 protein_coding SRP72 2 OTTHUMG00000128843.17 +46784 chr4 HAVANA gene 56505209 56525481 2807.0 + 0 ENSG00000196503.4 protein_coding ARL9 2 OTTHUMG00000184000.3 +46785 chr4 HAVANA gene 56593004 56595681 2678.0 + 0 ENSG00000248590.2 transcribed_processed_pseudogene GLDCP1 1 OTTHUMG00000160768.4 pseudo_consens,overlapping_locus +46786 chr4 HAVANA gene 56530609 56603507 1793.0 + 0 ENSG00000249693.2 protein_coding THEGL 1 OTTHUMG00000160770.2 overlapping_locus +46787 chr4 HAVANA gene 56662469 56665694 3226.0 - 0 ENSG00000280285.1 TEC AC108215.1 2 OTTHUMG00000185293.1 overlapping_locus +46788 chr4 HAVANA gene 56647988 56681899 7753.0 - 0 ENSG00000171476.21 protein_coding HOPX 2 OTTHUMG00000128768.15 overlapping_locus +46789 chr4 HAVANA gene 56710060 56710614 555.0 + 0 ENSG00000241250.1 processed_pseudogene RPL17P20 1 OTTHUMG00000157478.1 pseudo_consens +46790 chr4 HAVANA gene 56760919 56761485 567.0 - 0 ENSG00000227040.4 processed_pseudogene AC022483.1 1 OTTHUMG00000160796.1 pseudo_consens +46791 chr4 ENSEMBL gene 56794348 56794642 295.0 - 0 ENSG00000240545.3 misc_RNA RN7SL492P 3 +46792 chr4 ENSEMBL gene 56805834 56806131 298.0 + 0 ENSG00000265894.2 misc_RNA RN7SL357P 3 +46793 chr4 ENSEMBL gene 56810422 56810681 260.0 + 0 ENSG00000278226.1 misc_RNA RF00017 3 +46794 chr4 ENSEMBL gene 56818218 56818314 97.0 - 0 ENSG00000251799.1 misc_RNA RF00019 3 +46795 chr4 HAVANA gene 56809860 56821742 772.0 - 0 ENSG00000128040.10 protein_coding SPINK2 2 OTTHUMG00000128769.2 ncRNA_host +46796 chr4 HAVANA gene 56960927 56961373 447.0 - 0 ENSG00000269949.1 lincRNA AC069307.1 2 OTTHUMG00000184001.1 +46797 chr4 HAVANA gene 56907876 56966678 7983.0 + 0 ENSG00000084093.16 protein_coding REST 2 OTTHUMG00000128770.2 +46798 chr4 HAVANA gene 56963370 56978823 3415.0 - 0 ENSG00000084092.6 protein_coding NOA1 2 OTTHUMG00000128773.3 +46799 chr4 ENSEMBL gene 57002692 57002792 101.0 + 0 ENSG00000251703.1 snRNA RNU6-998P 3 +46800 chr4 HAVANA gene 56977722 57031168 5901.0 + 0 ENSG00000047315.15 protein_coding POLR2B 2 OTTHUMG00000128771.8 ncRNA_host +46801 chr4 HAVANA gene 57072683 57073132 450.0 + 0 ENSG00000250384.1 processed_pseudogene UBE2CP3 1 OTTHUMG00000160776.1 pseudo_consens +46802 chr4 HAVANA gene 57030773 57110385 1930.0 - 0 ENSG00000163453.11 protein_coding IGFBP7 2 OTTHUMG00000128772.2 +46803 chr4 HAVANA gene 57154577 57156452 560.0 + 0 ENSG00000250192.1 lincRNA AC105390.1 1 OTTHUMG00000162167.1 overlapping_locus +46804 chr4 HAVANA gene 57109762 57205510 1740.0 + 0 ENSG00000245067.6 antisense IGFBP7-AS1 2 OTTHUMG00000161143.4 overlapping_locus +46805 chr4 HAVANA gene 57352999 57353329 331.0 - 0 ENSG00000243920.2 processed_pseudogene RPS26P24 1 OTTHUMG00000157479.4 pseudo_consens +46806 chr4 HAVANA gene 57425872 57465986 1038.0 + 0 ENSG00000248505.1 lincRNA LINC02380 2 OTTHUMG00000160663.3 +46807 chr4 HAVANA gene 57491390 57495233 783.0 + 0 ENSG00000251459.1 lincRNA AC013724.1 1 OTTHUMG00000161225.2 +46808 chr4 HAVANA gene 57595940 57605872 735.0 - 0 ENSG00000251049.2 lincRNA AC107396.1 2 OTTHUMG00000162168.2 overlapping_locus +46809 chr4 HAVANA gene 57605694 57658800 356.0 - 0 ENSG00000250333.1 lincRNA AC093725.2 2 OTTHUMG00000161707.2 overlapping_locus +46810 chr4 HAVANA gene 57720035 57724655 2672.0 + 0 ENSG00000249831.2 lincRNA AC093725.1 1 OTTHUMG00000162318.3 +46811 chr4 HAVANA gene 58103147 58103434 288.0 + 0 ENSG00000248660.1 processed_pseudogene SRIP1 1 OTTHUMG00000160660.1 pseudo_consens +46812 chr4 HAVANA gene 58117758 58118070 313.0 - 0 ENSG00000249105.2 processed_pseudogene AC096725.1 2 OTTHUMG00000160662.4 +46813 chr4 HAVANA gene 58524515 58536328 427.0 - 0 ENSG00000250340.1 lincRNA LINC02494 2 OTTHUMG00000161708.1 +46814 chr4 HAVANA gene 58562165 58565122 420.0 - 0 ENSG00000250078.1 lincRNA AC019133.1 1 OTTHUMG00000161714.1 +46815 chr4 HAVANA gene 58780626 58984152 1813.0 - 0 ENSG00000251339.5 lincRNA AC017091.1 2 OTTHUMG00000161226.3 +46816 chr4 HAVANA gene 58987182 58988160 831.0 - 0 ENSG00000249382.2 processed_transcript AC097501.1 2 OTTHUMG00000161246.3 +46817 chr4 HAVANA gene 58984282 59046959 749.0 + 0 ENSG00000251266.1 lincRNA LINC02429 2 OTTHUMG00000161247.2 +46818 chr4 HAVANA gene 59047020 59075256 305.0 - 0 ENSG00000250375.2 lincRNA AC097501.2 2 OTTHUMG00000161727.2 +46819 chr4 HAVANA gene 59152834 59176146 327.0 + 0 ENSG00000249111.1 lincRNA AC108517.1 2 OTTHUMG00000161728.1 +46820 chr4 ENSEMBL gene 59533786 59533898 113.0 + 0 ENSG00000199780.1 misc_RNA RF00019 3 +46821 chr4 HAVANA gene 59551142 59630324 558.0 - 0 ENSG00000249392.1 lincRNA AC096588.1 2 OTTHUMG00000161730.1 +46822 chr4 HAVANA gene 59767816 59792114 760.0 - 0 ENSG00000249892.1 lincRNA AC093857.1 2 OTTHUMG00000161731.2 +46823 chr4 ENSEMBL gene 59833175 59833276 102.0 + 0 ENSG00000201676.1 misc_RNA RF00019 3 +46824 chr4 ENSEMBL gene 59834063 59834167 105.0 + 0 ENSG00000201775.1 snRNA RNU6-1325P 3 +46825 chr4 HAVANA gene 60038269 60038586 318.0 + 0 ENSG00000283043.1 processed_pseudogene AC097655.1 2 OTTHUMG00000191508.1 +46826 chr4 HAVANA gene 60784115 60784696 582.0 + 0 ENSG00000248237.2 processed_pseudogene AC105420.1 1 OTTHUMG00000160658.2 pseudo_consens,overlapping_locus +46827 chr4 HAVANA gene 60750586 60789999 584.0 + 0 ENSG00000249066.1 lincRNA LINC02496 2 OTTHUMG00000161732.1 overlapping_locus +46828 chr4 ENSEMBL gene 60922619 60922684 66.0 + 0 ENSG00000265829.1 miRNA MIR548AG1 3 +46829 chr4 HAVANA gene 61143656 61153962 829.0 + 0 ENSG00000240152.2 lincRNA LINC02271 2 OTTHUMG00000160657.1 +46830 chr4 HAVANA gene 61211652 61212203 552.0 + 0 ENSG00000241261.1 processed_pseudogene RPL17P19 1 OTTHUMG00000157483.1 pseudo_consens,overlapping_locus +46831 chr4 HAVANA gene 61420246 61428221 2079.0 - 0 ENSG00000205682.2 lincRNA AC020741.1 2 OTTHUMG00000160689.1 +46832 chr4 HAVANA gene 61775449 61775850 402.0 - 0 ENSG00000226439.3 processed_pseudogene AC108161.1 1 OTTHUMG00000157484.1 pseudo_consens +46833 chr4 ENSEMBL gene 61906313 61906408 96.0 + 0 ENSG00000202169.1 misc_RNA RF00019 3 +46834 chr4 HAVANA gene 61201258 62078335 13991.0 + 0 ENSG00000150471.16 protein_coding ADGRL3 2 OTTHUMG00000160690.2 ncRNA_host,overlapping_locus +46835 chr4 HAVANA gene 62105660 62106049 390.0 - 0 ENSG00000225405.3 processed_pseudogene RPS15AP17 1 OTTHUMG00000157485.1 pseudo_consens,overlapping_locus +46836 chr4 HAVANA gene 62071752 62165554 947.0 - 0 ENSG00000248692.5 antisense ADGRL3-AS1 2 OTTHUMG00000160691.1 overlapping_locus +46837 chr4 HAVANA gene 62248294 62248770 477.0 + 0 ENSG00000241344.1 processed_pseudogene RPL21P47 1 OTTHUMG00000157487.1 pseudo_consens +46838 chr4 HAVANA gene 62291562 62292337 353.0 + 0 ENSG00000250249.2 processed_pseudogene AC105313.1 1 OTTHUMG00000160688.2 pseudo_consens +46839 chr4 HAVANA gene 62489495 62490218 724.0 - 0 ENSG00000248847.2 processed_pseudogene AC074087.1 1 OTTHUMG00000160669.2 pseudo_consens +46840 chr4 HAVANA gene 62510469 62510771 303.0 + 0 ENSG00000248336.1 processed_pseudogene HMGN1P11 1 OTTHUMG00000162341.1 pseudo_consens +46841 chr4 HAVANA gene 62816826 62818794 1969.0 + 0 ENSG00000180673.9 processed_pseudogene EXOC5P1 1 OTTHUMG00000160716.2 pseudo_consens +46842 chr4 HAVANA gene 63128311 63143881 672.0 + 0 ENSG00000251055.2 lincRNA AC097491.1 2 OTTHUMG00000162339.2 +46843 chr4 HAVANA gene 63350114 63351472 1359.0 + 0 ENSG00000231442.3 processed_pseudogene LARP1BP1 1 OTTHUMG00000160671.3 pseudo_consens +46844 chr4 HAVANA gene 63468701 63494278 448.0 - 0 ENSG00000250775.1 lincRNA AC093730.1 2 OTTHUMG00000161737.1 +46845 chr4 ENSEMBL gene 64397694 64397787 94.0 - 0 ENSG00000252104.1 snRNA RNU6-191P 3 +46846 chr4 HAVANA gene 64275257 64409468 6023.0 - 0 ENSG00000205678.7 protein_coding TECRL 2 OTTHUMG00000160680.7 ncRNA_host +46847 chr4 HAVANA gene 64430909 64433215 2063.0 + 0 ENSG00000250768.1 processed_pseudogene DPP3P1 1 OTTHUMG00000160714.3 pseudo_consens +46848 chr4 HAVANA gene 64606418 64606613 196.0 + 0 ENSG00000251430.1 unprocessed_pseudogene MTCO3P27 2 OTTHUMG00000162345.2 +46849 chr4 HAVANA gene 64607703 64608831 1129.0 - 0 ENSG00000251385.2 processed_pseudogene MTCYBP16 2 OTTHUMG00000162338.3 +46850 chr4 HAVANA gene 64608905 64609424 520.0 + 0 ENSG00000249893.1 unprocessed_pseudogene MTND6P16 2 OTTHUMG00000162340.1 +46851 chr4 HAVANA gene 64609454 64610532 1079.0 - 0 ENSG00000250169.1 processed_pseudogene MTND5P13 1 OTTHUMG00000162346.2 pseudo_consens +46852 chr4 HAVANA gene 64610616 64610909 294.0 - 0 ENSG00000248259.1 unprocessed_pseudogene MTND4LP31 1 OTTHUMG00000162343.2 pseudo_consens +46853 chr4 HAVANA gene 64610980 64611308 329.0 - 0 ENSG00000249045.1 unprocessed_pseudogene MTND3P24 1 OTTHUMG00000162342.2 pseudo_consens +46854 chr4 HAVANA gene 64611374 64611888 515.0 - 0 ENSG00000248328.1 unprocessed_pseudogene MTCO3P28 2 OTTHUMG00000162344.1 +46855 chr4 HAVANA gene 64767130 64767897 768.0 - 0 ENSG00000244669.1 processed_pseudogene AC104689.1 1 OTTHUMG00000157490.1 pseudo_consens +46856 chr4 HAVANA gene 64914281 65024485 4460.0 - 0 ENSG00000250125.2 lincRNA LINC02232 2 OTTHUMG00000160703.3 +46857 chr4 HAVANA gene 65034634 65036017 1384.0 - 0 ENSG00000248447.2 processed_pseudogene AC107058.1 2 OTTHUMG00000160704.2 +46858 chr4 HAVANA gene 65142703 65145763 1603.0 - 0 ENSG00000248998.2 processed_pseudogene EFL1P2 1 OTTHUMG00000160702.2 pseudo_consens +46859 chr4 HAVANA gene 65216616 65217433 818.0 + 0 ENSG00000249351.2 processed_pseudogene AC096754.1 1 OTTHUMG00000160701.2 pseudo_consens +46860 chr4 HAVANA gene 65225867 65241814 858.0 - 0 ENSG00000285711.1 lincRNA AC018683.1 2 OTTHUMG00000193080.1 +46861 chr4 HAVANA gene 65573459 65574328 870.0 + 0 ENSG00000243199.1 processed_pseudogene AC115223.1 1 OTTHUMG00000157492.1 pseudo_consens +46862 chr4 HAVANA gene 65319563 65670495 9833.0 - 0 ENSG00000145242.13 protein_coding EPHA5 2 OTTHUMG00000129273.4 +46863 chr4 HAVANA gene 65669961 65698029 1258.0 + 0 ENSG00000250846.6 lincRNA EPHA5-AS1 2 OTTHUMG00000161982.1 +46864 chr4 HAVANA gene 65702202 65705553 385.0 + 0 ENSG00000248479.1 lincRNA AC104137.1 2 OTTHUMG00000160709.1 +46865 chr4 ENSEMBL gene 65807240 65807435 196.0 - 0 ENSG00000222765.1 snRNA RNU2-40P 3 +46866 chr4 HAVANA gene 65858761 65860204 768.0 + 0 ENSG00000251527.1 lincRNA AC097110.1 2 OTTHUMG00000160708.1 +46867 chr4 HAVANA gene 66003281 66016792 552.0 + 0 ENSG00000272304.1 lincRNA AC096721.1 2 OTTHUMG00000160711.1 overlapping_locus +46868 chr4 HAVANA gene 66094142 66094526 385.0 + 0 ENSG00000236562.4 processed_pseudogene AC116049.1 1 OTTHUMG00000160707.1 pseudo_consens,overlapping_locus +46869 chr4 HAVANA gene 65998846 66150012 754.0 + 0 ENSG00000249413.2 lincRNA AC116049.2 2 OTTHUMG00000185534.1 overlapping_locus +46870 chr4 ENSEMBL gene 66276824 66276928 105.0 + 0 ENSG00000221563.1 miRNA MIR1269A 3 +46871 chr4 HAVANA gene 66431092 66431521 430.0 + 0 ENSG00000244099.1 processed_pseudogene RPS23P3 1 OTTHUMG00000157494.1 pseudo_consens +46872 chr4 ENSEMBL gene 66897262 66897371 110.0 + 0 ENSG00000252890.1 snRNA RNU6-699P 3 +46873 chr4 ENSEMBL gene 67429591 67429754 164.0 - 0 ENSG00000206629.1 snRNA RNU1-63P 3 +46874 chr4 ENSEMBL gene 67439992 67440118 127.0 + 0 ENSG00000274759.1 rRNA RNA5SP527 3 +46875 chr4 HAVANA gene 67446267 67446574 308.0 + 0 ENSG00000250030.2 processed_pseudogene AC104806.1 1 OTTHUMG00000160747.3 pseudo_consens +46876 chr4 HAVANA gene 67417305 67468251 2286.0 - 0 ENSG00000250075.5 lincRNA AC104806.2 2 OTTHUMG00000160726.4 ncRNA_host +46877 chr4 HAVANA gene 67468748 67545606 8613.0 - 0 ENSG00000145241.10 protein_coding CENPC 2 OTTHUMG00000160735.4 +46878 chr4 HAVANA gene 67558728 67607337 1655.0 + 0 ENSG00000035720.7 protein_coding STAP1 2 OTTHUMG00000129304.1 +46879 chr4 HAVANA gene 67607856 67610313 2458.0 - 0 ENSG00000279464.1 TEC AC096720.2 2 OTTHUMG00000176312.1 +46880 chr4 HAVANA gene 67638177 67638359 183.0 + 0 ENSG00000270257.1 processed_pseudogene AC096720.1 1 OTTHUMG00000184313.1 pseudo_consens +46881 chr4 HAVANA gene 67612652 67701179 11432.0 - 0 ENSG00000033178.12 protein_coding UBA6 2 OTTHUMG00000129299.6 +46882 chr4 HAVANA gene 67716375 67717388 1014.0 - 0 ENSG00000250656.2 processed_pseudogene ST3GAL1P1 1 OTTHUMG00000160778.2 pseudo_consens +46883 chr4 HAVANA gene 67718996 67724262 2046.0 - 0 ENSG00000270228.1 processed_pseudogene AC079880.1 1 OTTHUMG00000184936.1 pseudo_consens +46884 chr4 HAVANA gene 67725183 67726395 1213.0 - 0 ENSG00000270292.1 processed_pseudogene AC079880.2 1 OTTHUMG00000184938.1 pseudo_consens +46885 chr4 ENSEMBL gene 67747236 67747386 151.0 + 0 ENSG00000202374.1 snoRNA RF00091 3 +46886 chr4 HAVANA gene 67739328 67754360 2164.0 - 0 ENSG00000109163.6 protein_coding GNRHR 2 OTTHUMG00000129302.2 +46887 chr4 HAVANA gene 67766480 67773854 683.0 - 0 ENSG00000232398.1 unprocessed_pseudogene TMPRSS11CP 2 OTTHUMG00000154681.1 +46888 chr4 HAVANA gene 67820876 67884032 3294.0 - 0 ENSG00000153802.11 protein_coding TMPRSS11D 2 OTTHUMG00000129300.5 +46889 chr4 HAVANA gene 67909385 67964140 3970.0 - 0 ENSG00000187054.15 protein_coding TMPRSS11A 2 OTTHUMG00000129303.4 +46890 chr4 ENSEMBL gene 68003895 68004001 107.0 + 0 ENSG00000207428.1 snRNA RNU6-95P 3 +46891 chr4 HAVANA gene 67991684 68015768 1269.0 - 0 ENSG00000229009.7 transcribed_unprocessed_pseudogene TMPRSS11GP 2 OTTHUMG00000154737.3 +46892 chr4 HAVANA gene 68038544 68039647 1104.0 + 0 ENSG00000227725.3 processed_pseudogene GCOM2 2 OTTHUMG00000160803.1 overlapping_locus +46893 chr4 HAVANA gene 68049706 68050478 773.0 - 0 ENSG00000283131.1 unprocessed_pseudogene MTND2P41 2 OTTHUMG00000191786.1 +46894 chr4 HAVANA gene 68061822 68063269 1448.0 - 0 ENSG00000215127.6 transcribed_processed_pseudogene SYT14P1 1 OTTHUMG00000157371.2 pseudo_consens,overlapping_locus +46895 chr4 HAVANA gene 67701280 68080952 5575.0 + 0 ENSG00000248049.6 antisense UBA6-AS1 2 OTTHUMG00000160769.4 ncRNA_host,overlapping_locus +46896 chr4 HAVANA gene 68053198 68129880 2088.0 - 0 ENSG00000198092.5 protein_coding TMPRSS11F 2 OTTHUMG00000129307.1 overlapping_locus +46897 chr4 HAVANA gene 68182292 68212470 1501.0 + 0 ENSG00000250426.2 transcribed_processed_pseudogene FTLP10 1 OTTHUMG00000160804.4 pseudo_consens +46898 chr4 HAVANA gene 68184081 68218080 4338.0 - 0 ENSG00000250026.5 transcribed_unprocessed_pseudogene TMPRSS11BNL 2 OTTHUMG00000160802.5 +46899 chr4 HAVANA gene 68226653 68245720 3378.0 - 0 ENSG00000185873.7 protein_coding TMPRSS11B 2 OTTHUMG00000129301.2 +46900 chr4 HAVANA gene 68282461 68285959 438.0 - 0 ENSG00000250642.3 unprocessed_pseudogene AC098799.3 1 OTTHUMG00000160820.3 pseudo_consens +46901 chr4 HAVANA gene 68293127 68294364 800.0 + 0 ENSG00000248639.2 processed_pseudogene AC098799.1 2 OTTHUMG00000161658.2 +46902 chr4 HAVANA gene 68300325 68302459 868.0 + 0 ENSG00000249531.2 processed_pseudogene AC098799.2 2 OTTHUMG00000160816.2 +46903 chr4 HAVANA gene 68304343 68304939 597.0 - 0 ENSG00000248122.1 processed_pseudogene APOOP4 1 OTTHUMG00000160819.1 pseudo_consens +46904 chr4 HAVANA gene 68310387 68350089 7032.0 - 0 ENSG00000083896.12 protein_coding YTHDC1 2 OTTHUMG00000129306.5 +46905 chr4 HAVANA gene 68376323 68376505 183.0 + 0 ENSG00000162840.4 processed_pseudogene MT2P1 2 OTTHUMG00000160744.1 +46906 chr4 HAVANA gene 68447449 68497604 2138.0 + 0 ENSG00000087128.9 protein_coding TMPRSS11E 2 OTTHUMG00000160438.1 +46907 chr4 HAVANA gene 68509441 68517647 973.0 - 0 ENSG00000250566.1 unprocessed_pseudogene UGT2B29P 2 OTTHUMG00000160743.1 +46908 chr4 HAVANA gene 68537184 68568527 2077.0 - 0 ENSG00000197888.2 protein_coding UGT2B17 2 OTTHUMG00000129305.1 +46909 chr4 HAVANA gene 68614419 68615013 595.0 + 0 ENSG00000249472.1 processed_pseudogene AC147055.2 1 OTTHUMG00000161518.1 pseudo_consens +46910 chr4 HAVANA gene 68615393 68616137 745.0 - 0 ENSG00000251101.1 processed_pseudogene AC147055.4 1 OTTHUMG00000161516.1 pseudo_consens +46911 chr4 HAVANA gene 68626847 68628899 851.0 - 0 ENSG00000251074.1 unprocessed_pseudogene AC147055.3 2 OTTHUMG00000161501.1 +46912 chr4 HAVANA gene 68646630 68670628 2077.0 - 0 ENSG00000196620.9 protein_coding UGT2B15 2 OTTHUMG00000161507.1 +46913 chr4 HAVANA gene 68704600 68712498 750.0 - 0 ENSG00000248635.1 unprocessed_pseudogene AC147055.1 2 OTTHUMG00000161503.1 +46914 chr4 HAVANA gene 68784618 68787474 714.0 + 0 ENSG00000250376.1 unprocessed_pseudogene AC093720.1 2 OTTHUMG00000161502.1 +46915 chr4 HAVANA gene 68813995 68814727 733.0 + 0 ENSG00000251236.1 unprocessed_pseudogene AC021146.8 2 OTTHUMG00000161504.1 +46916 chr4 HAVANA gene 68815993 68831196 1931.0 + 0 ENSG00000109181.11 protein_coding UGT2B10 2 OTTHUMG00000161505.1 +46917 chr4 HAVANA gene 68834213 68834368 156.0 - 0 ENSG00000251424.1 unprocessed_pseudogene AC021146.9 2 OTTHUMG00000161510.1 +46918 chr4 HAVANA gene 68861332 68861610 279.0 - 0 ENSG00000249235.1 unprocessed_pseudogene AC021146.4 2 OTTHUMG00000161500.1 +46919 chr4 HAVANA gene 68877626 68880131 491.0 - 0 ENSG00000251529.1 unprocessed_pseudogene AC021146.11 2 OTTHUMG00000161511.1 +46920 chr4 HAVANA gene 68883885 68884440 556.0 - 0 ENSG00000248547.2 processed_pseudogene AC021146.2 1 OTTHUMG00000161519.2 pseudo_consens +46921 chr4 HAVANA gene 68900651 68900910 260.0 - 0 ENSG00000248613.1 unprocessed_pseudogene AC021146.3 2 OTTHUMG00000161512.1 +46922 chr4 HAVANA gene 68901008 68906983 477.0 - 0 ENSG00000272626.1 lincRNA AC021146.12 2 OTTHUMG00000186291.1 +46923 chr4 HAVANA gene 68907918 68908034 117.0 - 0 ENSG00000249985.1 unprocessed_pseudogene AC021146.6 2 OTTHUMG00000161506.1 +46924 chr4 HAVANA gene 68914928 68924741 716.0 - 0 ENSG00000198277.6 unprocessed_pseudogene AC021146.1 2 OTTHUMG00000161508.1 +46925 chr4 HAVANA gene 68928463 68951791 3062.0 - 0 ENSG00000135220.10 protein_coding UGT2A3 2 OTTHUMG00000129408.2 +46926 chr4 HAVANA gene 68972999 68975993 706.0 - 0 ENSG00000251498.1 unprocessed_pseudogene AC021146.10 2 OTTHUMG00000161515.1 +46927 chr4 HAVANA gene 68985009 68988533 545.0 - 0 ENSG00000249735.1 unprocessed_pseudogene AC021146.5 2 OTTHUMG00000161499.1 +46928 chr4 HAVANA gene 68996935 68997709 775.0 - 0 ENSG00000250277.2 processed_pseudogene AC021146.7 1 OTTHUMG00000161517.2 pseudo_consens +46929 chr4 HAVANA gene 69004862 69020414 1620.0 - 0 ENSG00000251685.3 unprocessed_pseudogene UGT2B27P 2 OTTHUMG00000161513.1 +46930 chr4 HAVANA gene 69021656 69022340 685.0 - 0 ENSG00000249890.1 unprocessed_pseudogene AC107401.1 2 OTTHUMG00000161509.1 +46931 chr4 HAVANA gene 69027831 69044578 1613.0 + 0 ENSG00000250919.1 unprocessed_pseudogene UGT2B26P 2 OTTHUMG00000161514.1 +46932 chr4 HAVANA gene 69066395 69069888 550.0 + 0 ENSG00000248763.2 unprocessed_pseudogene AC111000.2 2 OTTHUMG00000161836.2 overlapping_locus +46933 chr4 HAVANA gene 69051363 69112987 2259.0 + 0 ENSG00000171234.13 protein_coding UGT2B7 1 OTTHUMG00000129404.5 overlapping_locus +46934 chr4 HAVANA gene 69125274 69126451 1178.0 + 0 ENSG00000251284.2 processed_pseudogene AC111000.5 1 OTTHUMG00000161625.3 pseudo_consens +46935 chr4 HAVANA gene 69131351 69134814 576.0 + 0 ENSG00000250100.2 unprocessed_pseudogene AC111000.3 2 OTTHUMG00000161612.2 +46936 chr4 HAVANA gene 69144734 69147671 709.0 + 0 ENSG00000251427.1 unprocessed_pseudogene AC111000.6 2 OTTHUMG00000161614.1 +46937 chr4 HAVANA gene 69181660 69182372 713.0 + 0 ENSG00000196472.4 transcribed_unprocessed_pseudogene AC111000.1 2 OTTHUMG00000161623.2 overlapping_locus +46938 chr4 HAVANA gene 69199951 69214731 2340.0 - 0 ENSG00000213759.9 protein_coding UGT2B11 2 OTTHUMG00000129395.2 +46939 chr4 HAVANA gene 69215908 69216635 728.0 - 0 ENSG00000268803.1 unprocessed_pseudogene AC114797.1 2 OTTHUMG00000161834.2 +46940 chr4 HAVANA gene 69182100 69216766 3025.0 + 0 ENSG00000250696.5 antisense AC111000.4 2 OTTHUMG00000161622.1 overlapping_locus +46941 chr4 HAVANA gene 69242628 69250815 1415.0 + 0 ENSG00000249763.1 processed_pseudogene AC114786.1 2 OTTHUMG00000161624.1 semi_processed +46942 chr4 HAVANA gene 69280499 69295050 1833.0 + 0 ENSG00000135226.17 protein_coding UGT2B28 2 OTTHUMG00000129401.2 +46943 chr4 HAVANA gene 69306469 69307173 705.0 - 0 ENSG00000251691.2 unprocessed_pseudogene AC114786.3 2 OTTHUMG00000161620.2 +46944 chr4 HAVANA gene 69346609 69358177 1426.0 + 0 ENSG00000250612.2 processed_pseudogene AC114786.2 2 OTTHUMG00000161621.2 semi_processed +46945 chr4 HAVANA gene 69387580 69388307 728.0 + 0 ENSG00000268209.1 unprocessed_pseudogene AC114786.4 2 OTTHUMG00000161611.2 +46946 chr4 HAVANA gene 69389492 69402081 1586.0 + 0 ENSG00000215110.7 processed_pseudogene UGT2B25P 2 OTTHUMG00000161617.2 semi_processed +46947 chr4 HAVANA gene 69406931 69407655 725.0 + 0 ENSG00000248824.2 unprocessed_pseudogene AC108078.1 2 OTTHUMG00000161835.2 +46948 chr4 HAVANA gene 69408828 69423164 1597.0 + 0 ENSG00000249956.4 processed_pseudogene UGT2B24P 2 OTTHUMG00000161615.2 semi_processed +46949 chr4 HAVANA gene 69437357 69441050 489.0 + 0 ENSG00000250828.2 unprocessed_pseudogene AC108078.3 2 OTTHUMG00000161616.2 +46950 chr4 HAVANA gene 69450014 69451613 236.0 + 0 ENSG00000249686.1 unprocessed_pseudogene AC108078.2 2 OTTHUMG00000161618.1 +46951 chr4 HAVANA gene 69517667 69518400 734.0 - 0 ENSG00000248886.2 unprocessed_pseudogene UGT2A3P7 2 OTTHUMG00000161619.2 overlapping_locus +46952 chr4 HAVANA gene 69480165 69526014 2506.0 - 0 ENSG00000156096.13 protein_coding UGT2B4 2 OTTHUMG00000058891.5 overlapping_locus +46953 chr4 HAVANA gene 69572391 69585527 1618.0 - 0 ENSG00000251177.2 unprocessed_pseudogene AC093829.1 2 OTTHUMG00000161837.2 +46954 chr4 HAVANA gene 69589309 69639642 1676.0 - 0 ENSG00000271271.5 protein_coding UGT2A2 2 OTTHUMG00000129398.5 overlapping_locus +46955 chr4 HAVANA gene 69588417 69653249 3919.0 - 0 ENSG00000173610.12 protein_coding UGT2A1 2 OTTHUMG00000184942.4 overlapping_locus +46956 chr4 HAVANA gene 69721162 69787961 7356.0 - 0 ENSG00000173597.8 protein_coding SULT1B1 1 OTTHUMG00000129407.6 +46957 chr4 HAVANA gene 69791872 69813888 882.0 - 0 ENSG00000236959.1 transcribed_unitary_pseudogene SULT1D1P 2 OTTHUMG00000154682.1 overlapping_locus +46958 chr4 HAVANA gene 69810780 69847786 716.0 - 0 ENSG00000284695.1 protein_coding AC108941.2 2 OTTHUMG00000192252.1 overlapping_locus +46959 chr4 HAVANA gene 69841212 69860152 2091.0 - 0 ENSG00000109193.11 protein_coding SULT1E1 2 OTTHUMG00000129403.3 overlapping_locus +46960 chr4 HAVANA gene 69888877 69889406 530.0 + 0 ENSG00000251489.2 processed_pseudogene AC108941.1 1 OTTHUMG00000160771.2 pseudo_consens +46961 chr4 HAVANA gene 69931081 69946574 985.0 + 0 ENSG00000126545.13 protein_coding CSN1S1 2 OTTHUMG00000160843.3 +46962 chr4 HAVANA gene 69955256 69961007 1066.0 - 0 ENSG00000135222.6 protein_coding CSN2 2 OTTHUMG00000129409.1 +46963 chr4 HAVANA gene 69995930 70002570 2176.0 + 0 ENSG00000126549.9 protein_coding STATH 2 OTTHUMG00000129394.2 +46964 chr4 HAVANA gene 70028413 70036538 2077.0 + 0 ENSG00000205649.7 protein_coding HTN3 2 OTTHUMG00000160841.3 +46965 chr4 HAVANA gene 70050402 70058845 3817.0 + 0 ENSG00000126550.8 protein_coding HTN1 2 OTTHUMG00000129397.3 +46966 chr4 HAVANA gene 70067386 70085290 886.0 + 0 ENSG00000234124.6 transcribed_unitary_pseudogene CSN1S2AP 2 OTTHUMG00000160842.1 +46967 chr4 HAVANA gene 70133616 70176799 5336.0 + 0 ENSG00000187533.13 protein_coding PRR27 2 OTTHUMG00000129402.5 +46968 chr4 HAVANA gene 70196496 70204576 1562.0 + 0 ENSG00000109205.16 protein_coding ODAM 2 OTTHUMG00000129406.4 +46969 chr4 HAVANA gene 70226071 70235252 566.0 + 0 ENSG00000181617.5 protein_coding FDCSP 2 OTTHUMG00000129393.1 +46970 chr4 HAVANA gene 70242588 70251428 836.0 + 0 ENSG00000171209.3 protein_coding CSN3 2 OTTHUMG00000129399.1 +46971 chr4 HAVANA gene 70334966 70337116 1532.0 + 0 ENSG00000145309.5 protein_coding CABS1 2 OTTHUMG00000129405.3 +46972 chr4 HAVANA gene 70360761 70367158 665.0 + 0 ENSG00000109208.4 protein_coding SMR3A 2 OTTHUMG00000160839.1 +46973 chr4 HAVANA gene 70370093 70390244 1436.0 + 0 ENSG00000171201.10 protein_coding SMR3B 2 OTTHUMG00000129396.3 +46974 chr4 HAVANA gene 70397882 70410194 1096.0 + 0 ENSG00000171199.10 protein_coding OPRPN 1 OTTHUMG00000160845.1 +46975 chr4 HAVANA gene 70430492 70482997 2798.0 + 0 ENSG00000171195.10 protein_coding MUC7 2 OTTHUMG00000129916.4 +46976 chr4 HAVANA gene 70518540 70532742 1037.0 + 0 ENSG00000187689.9 protein_coding AMTN 2 OTTHUMG00000129906.2 +46977 chr4 HAVANA gene 70592256 70607288 2009.0 + 0 ENSG00000178522.14 protein_coding AMBN 2 OTTHUMG00000129913.2 +46978 chr4 HAVANA gene 70655541 70681817 1680.0 - 0 ENSG00000132465.10 protein_coding JCHAIN 2 OTTHUMG00000129909.4 +46979 chr4 HAVANA gene 70628744 70686816 6522.0 + 0 ENSG00000132464.11 protein_coding ENAM 2 OTTHUMG00000129914.5 +46980 chr4 HAVANA gene 70688479 70690551 2073.0 + 0 ENSG00000132467.3 protein_coding UTP3 2 OTTHUMG00000129911.2 +46981 chr4 ENSEMBL gene 70701755 70701858 104.0 + 0 ENSG00000207448.1 snRNA RNU6-520P 3 +46982 chr4 ENSEMBL gene 70703018 70703123 106.0 - 0 ENSG00000207058.1 snRNA RNU6-784P 3 +46983 chr4 HAVANA gene 70703747 70704491 745.0 - 0 ENSG00000272986.1 antisense AC009570.1 2 OTTHUMG00000186293.1 +46984 chr4 HAVANA gene 70704204 70807315 8070.0 + 0 ENSG00000018189.12 protein_coding RUFY3 1 OTTHUMG00000129910.4 +46985 chr4 HAVANA gene 70815782 70839945 7785.0 - 0 ENSG00000132463.13 protein_coding GRSF1 1 OTTHUMG00000160846.5 +46986 chr4 ENSEMBL gene 70848136 70848218 83.0 - 0 ENSG00000283313.1 snRNA RF00026 3 +46987 chr4 ENSEMBL gene 70852130 70852240 111.0 + 0 ENSG00000207007.1 snRNA RNU6-891P 3 +46988 chr4 HAVANA gene 70902326 71022449 8801.0 + 0 ENSG00000173542.8 protein_coding MOB1B 2 OTTHUMG00000160844.3 overlapping_locus +46989 chr4 HAVANA gene 70992538 71030914 3227.0 + 0 ENSG00000156136.9 protein_coding DCK 2 OTTHUMG00000129908.5 overlapping_locus +46990 chr4 HAVANA gene 71300258 71301235 978.0 - 0 ENSG00000249170.1 processed_pseudogene AC096713.1 1 OTTHUMG00000160785.1 pseudo_consens +46991 chr4 HAVANA gene 71434405 71437924 1143.0 - 0 ENSG00000270098.1 processed_pseudogene LDHAL6EP 1 OTTHUMG00000160110.2 pseudo_consens +46992 chr4 HAVANA gene 71062667 71572087 9622.0 + 0 ENSG00000080493.16 protein_coding SLC4A4 2 OTTHUMG00000129907.6 +46993 chr4 ENSEMBL gene 71759518 71759616 99.0 - 0 ENSG00000222236.1 rRNA_pseudogene RNA5SP163 3 +46994 chr4 HAVANA gene 71741693 71804041 2381.0 - 0 ENSG00000145321.12 protein_coding GC 2 OTTHUMG00000129915.4 +46995 chr4 HAVANA gene 71821305 71823980 583.0 - 0 ENSG00000248567.1 lincRNA AC068721.1 2 OTTHUMG00000160780.1 +46996 chr4 HAVANA gene 72031804 72148067 2359.0 + 0 ENSG00000056291.17 protein_coding NPFFR2 2 OTTHUMG00000129918.3 +46997 chr4 HAVANA gene 72323028 72330751 425.0 + 0 ENSG00000250877.1 antisense AC095056.1 2 OTTHUMG00000160782.1 +46998 chr4 HAVANA gene 72280969 72569386 7172.0 - 0 ENSG00000156140.9 protein_coding ADAMTS3 2 OTTHUMG00000129912.3 +46999 chr4 HAVANA gene 72807267 72808192 926.0 + 0 ENSG00000270665.1 processed_pseudogene HNRNPA1P67 1 OTTHUMG00000160810.2 pseudo_consens +47000 chr4 ENSEMBL gene 72965178 72965303 126.0 + 0 ENSG00000252955.1 snRNA RNU4ATAC9P 3 +47001 chr4 ENSEMBL gene 73026748 73026873 126.0 + 0 ENSG00000210839.1 snRNA RNU6ATAC5P 3 +47002 chr4 HAVANA gene 73052362 73069755 6976.0 - 0 ENSG00000163626.16 protein_coding COX18 1 OTTHUMG00000129917.5 +47003 chr4 HAVANA gene 73098822 73099145 324.0 + 0 ENSG00000248641.1 processed_pseudogene HMGA1P2 2 OTTHUMG00000160837.1 +47004 chr4 HAVANA gene 73073376 73258798 12042.0 - 0 ENSG00000132466.18 protein_coding ANKRD17 1 OTTHUMG00000160826.10 +47005 chr4 ENSEMBL gene 73263960 73264084 125.0 + 0 ENSG00000221639.1 snoRNA RF00334 3 +47006 chr4 HAVANA gene 73259209 73317953 685.0 + 0 ENSG00000250220.1 antisense AC053527.1 2 OTTHUMG00000160836.1 ncRNA_host +47007 chr4 HAVANA gene 73337233 73337771 539.0 - 0 ENSG00000249976.2 processed_pseudogene AC108157.1 1 OTTHUMG00000160787.2 pseudo_consens +47008 chr4 HAVANA gene 73397114 73421412 3377.0 + 0 ENSG00000163631.16 protein_coding ALB 1 OTTHUMG00000129919.5 +47009 chr4 HAVANA gene 73431138 73456174 3259.0 + 0 ENSG00000081051.7 protein_coding AFP 2 OTTHUMG00000130011.3 +47010 chr4 HAVANA gene 73481683 73504001 2244.0 + 0 ENSG00000079557.4 protein_coding AFM 2 OTTHUMG00000130004.3 +47011 chr4 HAVANA gene 73508803 73534128 1193.0 + 0 ENSG00000250436.1 lincRNA LINC02499 2 OTTHUMG00000161581.1 +47012 chr4 HAVANA gene 73543822 73544013 192.0 + 0 ENSG00000249970.1 processed_pseudogene AC074250.1 1 OTTHUMG00000161579.2 pseudo_consens +47013 chr4 HAVANA gene 73571550 73620631 6632.0 - 0 ENSG00000169435.13 protein_coding RASSF6 2 OTTHUMG00000130007.2 +47014 chr4 HAVANA gene 73710302 73714527 575.0 + 0 ENSG00000228277.1 lincRNA AC112518.1 2 OTTHUMG00000151319.2 +47015 chr4 HAVANA gene 73740506 73743716 2274.0 + 0 ENSG00000169429.10 protein_coding CXCL8 2 OTTHUMG00000151316.1 +47016 chr4 HAVANA gene 73777636 73778060 425.0 - 0 ENSG00000249051.2 processed_pseudogene AC112518.2 1 OTTHUMG00000160786.2 pseudo_consens +47017 chr4 HAVANA gene 73847866 73848829 373.0 + 0 ENSG00000250550.3 transcribed_unprocessed_pseudogene PPBPP1 2 OTTHUMG00000160814.1 overlapping_locus +47018 chr4 HAVANA gene 73836497 73849064 2183.0 + 0 ENSG00000124875.9 protein_coding CXCL6 1 OTTHUMG00000130010.3 overlapping_locus +47019 chr4 HAVANA gene 73853189 73854155 522.0 + 0 ENSG00000109272.3 protein_coding PF4V1 2 OTTHUMG00000130177.1 +47020 chr4 HAVANA gene 73869393 73871242 1296.0 + 0 ENSG00000163739.4 protein_coding CXCL1 2 OTTHUMG00000160866.1 +47021 chr4 HAVANA gene 73938604 73939558 955.0 - 0 ENSG00000249920.2 processed_pseudogene HNRNPA1P55 1 OTTHUMG00000160860.2 pseudo_consens +47022 chr4 HAVANA gene 73944011 73944324 216.0 - 0 ENSG00000250339.2 processed_pseudogene CXCL1P1 2 OTTHUMG00000160868.2 +47023 chr4 HAVANA gene 73981077 73982124 604.0 - 0 ENSG00000163737.3 protein_coding PF4 2 OTTHUMG00000130009.1 +47024 chr4 HAVANA gene 73987038 73988197 715.0 - 0 ENSG00000163736.3 protein_coding PPBP 2 OTTHUMG00000130008.2 +47025 chr4 HAVANA gene 73995642 73998779 2538.0 - 0 ENSG00000163735.6 protein_coding CXCL5 2 OTTHUMG00000160871.1 +47026 chr4 ENSEMBL gene 74011578 74011876 299.0 + 0 ENSG00000244194.3 misc_RNA RN7SL218P 3 +47027 chr4 HAVANA gene 74036589 74038807 2219.0 - 0 ENSG00000163734.4 protein_coding CXCL3 2 OTTHUMG00000160861.1 +47028 chr4 HAVANA gene 74054038 74055399 1362.0 - 0 ENSG00000248848.1 transcribed_unprocessed_pseudogene PPBPP2 2 OTTHUMG00000160862.1 +47029 chr4 HAVANA gene 74085995 74086672 678.0 - 0 ENSG00000251017.1 processed_pseudogene AC093677.1 1 OTTHUMG00000160864.1 pseudo_consens +47030 chr4 HAVANA gene 74097035 74099293 1500.0 - 0 ENSG00000081041.8 protein_coding CXCL2 2 OTTHUMG00000160865.2 +47031 chr4 HAVANA gene 74156511 74158373 1863.0 - 0 ENSG00000269559.2 antisense AC093677.2 2 OTTHUMG00000187203.1 +47032 chr4 HAVANA gene 74114174 74303099 9819.0 + 0 ENSG00000163738.18 protein_coding MTHFD2L 1 OTTHUMG00000157135.3 +47033 chr4 HAVANA gene 74308473 74315307 1814.0 + 0 ENSG00000182585.9 protein_coding EPGN 2 OTTHUMG00000160869.2 +47034 chr4 HAVANA gene 74365143 74388751 5717.0 + 0 ENSG00000124882.3 protein_coding EREG 2 OTTHUMG00000130005.2 +47035 chr4 HAVANA gene 74418917 74440457 558.0 - 0 ENSG00000250532.1 antisense AC021180.1 2 OTTHUMG00000160863.1 +47036 chr4 HAVANA gene 74445134 74455009 1648.0 + 0 ENSG00000109321.10 protein_coding AREG 2 OTTHUMG00000130006.2 +47037 chr4 HAVANA gene 74552584 74589481 732.0 - 0 ENSG00000249942.1 antisense AC239584.1 2 OTTHUMG00000160824.4 overlapping_locus +47038 chr4 HAVANA gene 74744759 74794686 2816.0 - 0 ENSG00000174808.11 protein_coding BTC 2 OTTHUMG00000130107.2 +47039 chr4 HAVANA gene 74917822 74918138 286.0 + 0 ENSG00000250356.1 processed_pseudogene HSPE1P23 1 OTTHUMG00000160825.1 pseudo_consens +47040 chr4 HAVANA gene 74955974 74970362 3341.0 - 0 ENSG00000249717.1 antisense AC110760.2 2 OTTHUMG00000160830.1 +47041 chr4 HAVANA gene 74993877 75034824 590.0 - 0 ENSG00000248165.1 antisense AC110760.1 2 OTTHUMG00000160828.1 +47042 chr4 HAVANA gene 74933095 75050115 5034.0 + 0 ENSG00000169116.11 protein_coding PARM1 2 OTTHUMG00000160827.1 +47043 chr4 HAVANA gene 75081702 75084717 1033.0 - 0 ENSG00000260265.1 lincRNA LINC02562 2 OTTHUMG00000176161.1 +47044 chr4 HAVANA gene 75101477 75101943 467.0 + 0 ENSG00000250315.2 transcribed_processed_pseudogene AC110760.3 1 OTTHUMG00000160831.2 pseudo_consens +47045 chr4 HAVANA gene 75194867 75195079 213.0 + 0 ENSG00000250560.2 processed_pseudogene AC093870.1 2 OTTHUMG00000160838.2 +47046 chr4 HAVANA gene 75341279 75359024 422.0 - 0 ENSG00000251454.1 lincRNA AC025244.2 2 OTTHUMG00000161881.2 overlapping_locus +47047 chr4 HAVANA gene 75269068 75361182 469.0 - 0 ENSG00000251185.1 lincRNA AC025244.1 2 OTTHUMG00000161880.1 overlapping_locus +47048 chr4 HAVANA gene 75354076 75362566 1143.0 + 0 ENSG00000251383.1 lincRNA LINC02483 2 OTTHUMG00000161884.1 +47049 chr4 HAVANA gene 75401195 75423023 800.0 + 0 ENSG00000250735.5 lincRNA AC096759.2 2 OTTHUMG00000161883.1 +47050 chr4 HAVANA gene 75361207 75434449 473.0 - 0 ENSG00000248646.1 lincRNA AC096759.1 2 OTTHUMG00000161882.1 +47051 chr4 HAVANA gene 75479037 75514764 6565.0 - 0 ENSG00000163743.13 protein_coding RCHY1 1 OTTHUMG00000130105.3 +47052 chr4 HAVANA gene 75513946 75550473 7127.0 + 0 ENSG00000174796.12 protein_coding THAP6 1 OTTHUMG00000130108.4 +47053 chr4 HAVANA gene 75556048 75565885 2054.0 + 0 ENSG00000174792.10 protein_coding ODAPH 2 OTTHUMG00000130104.2 +47054 chr4 HAVANA gene 75578005 75630716 3781.0 - 0 ENSG00000138769.10 protein_coding CDKL2 1 OTTHUMG00000130103.2 +47055 chr4 ENSEMBL gene 75662120 75662213 94.0 - 0 ENSG00000201644.2 misc_RNA RF00019 3 +47056 chr4 HAVANA gene 75642782 75724525 7183.0 - 0 ENSG00000138757.14 protein_coding G3BP2 2 OTTHUMG00000130097.14 ncRNA_host +47057 chr4 HAVANA gene 75724593 75814286 4588.0 + 0 ENSG00000138768.14 protein_coding USO1 2 OTTHUMG00000160952.9 +47058 chr4 ENSEMBL gene 75829454 75829589 136.0 - 0 ENSG00000222644.1 snRNA RNU2-16P 3 +47059 chr4 HAVANA gene 75830751 75832705 1955.0 + 0 ENSG00000229717.2 antisense AC110615.1 2 OTTHUMG00000160835.1 +47060 chr4 HAVANA gene 75859864 75902571 4979.0 - 0 ENSG00000156194.17 protein_coding PPEF2 2 OTTHUMG00000160915.6 +47061 chr4 HAVANA gene 75913657 75941051 4459.0 - 0 ENSG00000138744.14 protein_coding NAAA 1 OTTHUMG00000160855.8 overlapping_locus +47062 chr4 HAVANA gene 75940950 75990962 3491.0 - 0 ENSG00000198301.11 protein_coding SDAD1 2 OTTHUMG00000130111.6 overlapping_locus +47063 chr4 HAVANA gene 75980790 76005942 1685.0 + 0 ENSG00000245928.2 antisense AC112719.2 2 OTTHUMG00000160886.1 +47064 chr4 HAVANA gene 76001275 76007488 2740.0 - 0 ENSG00000138755.5 protein_coding CXCL9 2 OTTHUMG00000160889.1 +47065 chr4 HAVANA gene 76021117 76023497 1176.0 - 0 ENSG00000169245.5 protein_coding CXCL10 2 OTTHUMG00000160887.2 +47066 chr4 HAVANA gene 76036750 76037064 315.0 - 0 ENSG00000225846.4 processed_pseudogene AC112719.1 1 OTTHUMG00000157495.3 pseudo_consens,overlapping_locus +47067 chr4 HAVANA gene 76033682 76041415 1908.0 - 0 ENSG00000169248.12 protein_coding CXCL11 1 OTTHUMG00000130101.4 overlapping_locus +47068 chr4 HAVANA gene 76011184 76112802 3278.0 + 0 ENSG00000156219.16 protein_coding ART3 2 OTTHUMG00000130110.7 +47069 chr4 HAVANA gene 76114659 76148515 4062.0 - 0 ENSG00000138750.14 protein_coding NUP54 1 OTTHUMG00000130098.4 +47070 chr4 HAVANA gene 76158733 76234536 19341.0 - 0 ENSG00000138760.9 protein_coding SCARB2 1 OTTHUMG00000130099.6 +47071 chr4 HAVANA gene 76214040 76283780 9508.0 + 0 ENSG00000189157.13 protein_coding FAM47E 1 OTTHUMG00000185390.3 overlapping_locus +47072 chr4 HAVANA gene 76251721 76311129 3242.0 + 0 ENSG00000272414.5 protein_coding FAM47E-STBD1 2 OTTHUMG00000160966.6 overlapping_locus +47073 chr4 HAVANA gene 76306026 76311599 3420.0 + 0 ENSG00000118804.8 protein_coding STBD1 2 OTTHUMG00000130109.2 overlapping_locus +47074 chr4 HAVANA gene 76344550 76345590 1041.0 + 0 ENSG00000249858.2 processed_pseudogene SNX5P1 1 OTTHUMG00000160833.2 pseudo_consens +47075 chr4 ENSEMBL gene 76356610 76356715 106.0 - 0 ENSG00000212368.1 snRNA RNU6-1000P 3 +47076 chr4 HAVANA gene 76401251 76401569 319.0 + 0 ENSG00000240426.1 processed_pseudogene AC096743.1 1 OTTHUMG00000157498.1 pseudo_consens +47077 chr4 ENSEMBL gene 76402076 76402146 71.0 + 0 ENSG00000199857.1 snoRNA RF00278 3 +47078 chr4 HAVANA gene 76312997 76421868 5860.0 - 0 ENSG00000163749.17 protein_coding CCDC158 1 OTTHUMG00000160916.5 ncRNA_host +47079 chr4 HAVANA gene 76509284 76509719 436.0 - 0 ENSG00000249278.1 processed_pseudogene AC112249.1 1 OTTHUMG00000160829.1 pseudo_consens +47080 chr4 ENSEMBL gene 76532222 76532327 106.0 - 0 ENSG00000207307.1 snRNA RNU6-145P 3 +47081 chr4 ENSEMBL gene 76573568 76573632 65.0 + 0 ENSG00000263445.1 miRNA MIR4450 3 +47082 chr4 ENSEMBL gene 76575551 76575626 76.0 + 0 ENSG00000283682.1 miRNA MIR548AH 3 +47083 chr4 HAVANA gene 76756960 76758474 555.0 - 0 ENSG00000233860.1 antisense AC107072.2 1 OTTHUMG00000157074.3 +47084 chr4 HAVANA gene 76435100 76783253 13159.0 + 0 ENSG00000138771.15 protein_coding SHROOM3 1 OTTHUMG00000157075.3 ncRNA_host,overlapping_locus +47085 chr4 HAVANA gene 76758554 76801964 110.0 - 0 ENSG00000224218.1 antisense AC107072.1 2 OTTHUMG00000157073.1 +47086 chr4 HAVANA gene 76886029 76886370 342.0 - 0 ENSG00000270244.1 processed_pseudogene AC104687.2 1 OTTHUMG00000184319.1 pseudo_consens +47087 chr4 HAVANA gene 76891034 76891445 412.0 + 0 ENSG00000242727.2 processed_pseudogene AC104687.1 1 OTTHUMG00000157500.2 pseudo_consens +47088 chr4 HAVANA gene 76894928 76898147 3220.0 - 0 ENSG00000186212.3 protein_coding SOWAHB 2 OTTHUMG00000160876.1 +47089 chr4 HAVANA gene 76958860 76959169 310.0 - 0 ENSG00000234036.4 processed_pseudogene TXNP6 1 OTTHUMG00000160877.1 pseudo_consens +47090 chr4 HAVANA gene 76949703 77040384 9787.0 + 0 ENSG00000138758.11 protein_coding SEPT11 1 OTTHUMG00000160854.2 +47091 chr4 HAVANA gene 77047158 77076005 3741.0 - 0 ENSG00000118816.9 protein_coding CCNI 1 OTTHUMG00000130106.3 +47092 chr4 HAVANA gene 77082403 77083126 724.0 - 0 ENSG00000214062.5 processed_pseudogene RPL7P17 1 OTTHUMG00000157502.2 pseudo_consens +47093 chr4 HAVANA gene 77112495 77113458 964.0 - 0 ENSG00000271676.1 processed_pseudogene AC104771.1 1 OTTHUMG00000184316.1 pseudo_consens +47094 chr4 ENSEMBL gene 77150328 77150437 110.0 - 0 ENSG00000201641.1 snRNA RNU6-1187P 3 +47095 chr4 HAVANA gene 77216416 77216878 463.0 - 0 ENSG00000270669.1 processed_pseudogene AC008638.3 1 OTTHUMG00000184944.1 pseudo_consens +47096 chr4 HAVANA gene 77311397 77312111 715.0 - 0 ENSG00000250006.2 processed_pseudogene AC008638.2 1 OTTHUMG00000160906.2 pseudo_consens +47097 chr4 HAVANA gene 77350370 77351235 866.0 - 0 ENSG00000248831.2 processed_pseudogene AC008638.1 1 OTTHUMG00000160908.2 pseudo_consens +47098 chr4 HAVANA gene 77157151 77433388 7471.0 + 0 ENSG00000138764.14 protein_coding CCNG2 2 OTTHUMG00000130100.4 +47099 chr4 HAVANA gene 77394491 77494286 571.0 - 0 ENSG00000249036.1 lincRNA AC092674.1 2 OTTHUMG00000160909.1 +47100 chr4 HAVANA gene 77511753 77611834 1431.0 + 0 ENSG00000156234.7 protein_coding CXCL13 2 OTTHUMG00000130201.3 +47101 chr4 ENSEMBL gene 77702746 77702803 58.0 - 0 ENSG00000221711.1 snoRNA RF00612 3 +47102 chr4 HAVANA gene 77713387 77819615 9367.0 - 0 ENSG00000138767.13 protein_coding CNOT6L 2 OTTHUMG00000160832.7 +47103 chr4 HAVANA gene 77864508 77864804 297.0 - 0 ENSG00000250214.1 processed_pseudogene AC112225.1 1 OTTHUMG00000160847.1 pseudo_consens +47104 chr4 HAVANA gene 77862520 77952790 1943.0 + 0 ENSG00000169288.17 protein_coding MRPL1 2 OTTHUMG00000130200.4 +47105 chr4 HAVANA gene 77958000 77958780 781.0 - 0 ENSG00000248926.1 processed_pseudogene AC114801.2 1 OTTHUMG00000160852.1 pseudo_consens +47106 chr4 HAVANA gene 77963940 77964511 572.0 + 0 ENSG00000248956.1 processed_pseudogene HMGB1P44 1 OTTHUMG00000160848.1 pseudo_consens +47107 chr4 HAVANA gene 77987860 77988813 954.0 - 0 ENSG00000248640.1 processed_pseudogene HNRNPA1P56 1 OTTHUMG00000160850.1 pseudo_consens +47108 chr4 HAVANA gene 78003143 78003439 297.0 + 0 ENSG00000248128.1 processed_pseudogene AC114801.1 1 OTTHUMG00000160851.1 pseudo_consens +47109 chr4 HAVANA gene 78008512 78008688 177.0 - 0 ENSG00000249072.1 processed_pseudogene AC114801.3 2 OTTHUMG00000160849.1 +47110 chr4 HAVANA gene 78180866 78182046 1181.0 - 0 ENSG00000249565.2 processed_pseudogene SERBP1P5 1 OTTHUMG00000160901.2 pseudo_consens +47111 chr4 HAVANA gene 78379197 78379514 318.0 + 0 ENSG00000248117.1 processed_pseudogene MINOS1P4 1 OTTHUMG00000160898.1 pseudo_consens,overlapping_locus +47112 chr4 HAVANA gene 78057570 78544269 18960.0 + 0 ENSG00000138759.18 protein_coding FRAS1 1 OTTHUMG00000160856.4 overlapping_locus +47113 chr4 HAVANA gene 78551519 78610451 5123.0 + 0 ENSG00000138772.12 protein_coding ANXA3 1 OTTHUMG00000130198.9 +47114 chr4 ENSEMBL gene 78632273 78632385 113.0 - 0 ENSG00000200998.1 misc_RNA RF00019 3 +47115 chr4 HAVANA gene 78648954 78649242 289.0 - 0 ENSG00000251019.1 processed_pseudogene HIGD1AP13 1 OTTHUMG00000160899.1 pseudo_consens +47116 chr4 HAVANA gene 78645903 78682699 2951.0 + 0 ENSG00000251442.5 lincRNA LINC01094 2 OTTHUMG00000160897.1 +47117 chr4 HAVANA gene 78768499 78768750 252.0 + 0 ENSG00000239793.1 processed_pseudogene AC098818.1 1 OTTHUMG00000157503.1 pseudo_consens +47118 chr4 HAVANA gene 78773654 78775973 2320.0 - 0 ENSG00000260278.1 antisense AC098818.2 2 OTTHUMG00000175992.1 +47119 chr4 ENSEMBL gene 78820752 78820821 70.0 + 0 ENSG00000266270.1 miRNA MIR5096 3 +47120 chr4 ENSEMBL gene 78898855 78899154 300.0 + 0 ENSG00000242175.3 misc_RNA RN7SL127P 3 +47121 chr4 HAVANA gene 78776342 78916372 9938.0 + 0 ENSG00000138756.17 protein_coding BMP2K 2 OTTHUMG00000160900.2 ncRNA_host +47122 chr4 HAVANA gene 78887127 78939438 12403.0 - 0 ENSG00000163291.14 protein_coding PAQR3 2 OTTHUMG00000161026.1 +47123 chr4 HAVANA gene 78971748 79308798 3995.0 + 0 ENSG00000249307.5 antisense LINC01088 2 OTTHUMG00000160858.5 +47124 chr4 HAVANA gene 79225694 79326050 2701.0 - 0 ENSG00000156269.4 protein_coding NAA11 2 OTTHUMG00000160913.1 retrogene +47125 chr4 HAVANA gene 79406352 79408293 1942.0 - 0 ENSG00000196475.5 protein_coding GK2 2 OTTHUMG00000130199.2 retrogene +47126 chr4 HAVANA gene 79492416 79576460 2231.0 + 0 ENSG00000250334.5 lincRNA LINC00989 2 OTTHUMG00000160884.2 +47127 chr4 HAVANA gene 79587302 79588130 829.0 - 0 ENSG00000249646.2 transcribed_unprocessed_pseudogene OR7E94P 2 OTTHUMG00000160914.2 +47128 chr4 HAVANA gene 79596542 79597173 355.0 + 0 ENSG00000251399.1 lincRNA AC092542.1 2 OTTHUMG00000160859.1 +47129 chr4 HAVANA gene 79663761 79696837 741.0 + 0 ENSG00000248408.1 lincRNA LINC02469 2 OTTHUMG00000161747.1 +47130 chr4 ENSEMBL gene 79843102 79843228 127.0 + 0 ENSG00000212620.1 snoRNA RF00072 3 +47131 chr4 HAVANA gene 79827471 79877770 2247.0 + 0 ENSG00000251321.1 lincRNA PCAT4 2 OTTHUMG00000161746.1 ncRNA_host +47132 chr4 HAVANA gene 80079532 80081122 1591.0 + 0 ENSG00000236530.2 processed_pseudogene KPNA2P1 1 OTTHUMG00000151983.2 pseudo_consens +47133 chr4 HAVANA gene 79901149 80125454 9864.0 - 0 ENSG00000163297.16 protein_coding ANTXR2 2 OTTHUMG00000151982.3 +47134 chr4 HAVANA gene 80161129 80162011 883.0 + 0 ENSG00000244002.1 processed_pseudogene RPSAP39 1 OTTHUMG00000157504.2 pseudo_consens +47135 chr4 HAVANA gene 80183280 80190169 566.0 - 0 ENSG00000248719.1 antisense AC021127.1 2 OTTHUMG00000160883.1 +47136 chr4 HAVANA gene 80183879 80204329 4588.0 + 0 ENSG00000152784.15 protein_coding PRDM8 2 OTTHUMG00000160885.2 +47137 chr4 HAVANA gene 80266599 80336680 5998.0 + 0 ENSG00000138675.16 protein_coding FGF5 2 OTTHUMG00000130288.2 overlapping_locus +47138 chr4 HAVANA gene 80386178 80388716 2539.0 - 0 ENSG00000232327.4 processed_pseudogene AC105917.1 2 OTTHUMG00000160951.2 +47139 chr4 HAVANA gene 80335720 80963756 4478.0 + 0 ENSG00000197826.11 protein_coding CFAP299 2 OTTHUMG00000130289.4 overlapping_locus +47140 chr4 HAVANA gene 81030965 81057531 5734.0 + 0 ENSG00000152785.6 protein_coding BMP3 2 OTTHUMG00000130292.1 +47141 chr4 HAVANA gene 81164940 81193395 822.0 + 0 ENSG00000251059.5 antisense AC139722.1 2 OTTHUMG00000160880.1 +47142 chr4 HAVANA gene 81087370 81215117 5116.0 - 0 ENSG00000138669.9 protein_coding PRKG2 2 OTTHUMG00000130296.3 +47143 chr4 ENSEMBL gene 81334303 81334418 116.0 + 0 ENSG00000207065.1 snRNA RNU5A-2P 3 +47144 chr4 HAVANA gene 81733385 81734207 823.0 - 0 ENSG00000248282.1 processed_pseudogene MTCYBP44 2 OTTHUMG00000160938.1 overlapping_locus +47145 chr4 HAVANA gene 81919995 81920387 393.0 - 0 ENSG00000248448.2 processed_pseudogene COX5BP1 1 OTTHUMG00000160936.2 pseudo_consens,overlapping_locus +47146 chr4 ENSEMBL gene 81928313 81928439 127.0 + 0 ENSG00000252762.1 snoRNA RF00322 3 +47147 chr4 HAVANA gene 82010665 82013095 831.0 - 0 ENSG00000248543.2 processed_pseudogene NPM1P41 1 OTTHUMG00000160939.3 pseudo_consens,overlapping_locus +47148 chr4 HAVANA gene 81426393 82044244 10183.0 - 0 ENSG00000138670.17 protein_coding RASGEF1B 2 OTTHUMG00000160890.7 +47149 chr4 HAVANA gene 82128535 82129656 1122.0 + 0 ENSG00000250826.2 processed_pseudogene HNRNPA3P13 1 OTTHUMG00000160947.2 pseudo_consens +47150 chr4 ENSEMBL gene 82174547 82174653 107.0 + 0 ENSG00000202485.1 snRNA RNU6-499P 3 +47151 chr4 HAVANA gene 82275071 82276600 1530.0 + 0 ENSG00000234568.3 processed_pseudogene BIN2P1 1 OTTHUMG00000160953.1 pseudo_consens +47152 chr4 HAVANA gene 82284971 82340013 967.0 + 0 ENSG00000284516.1 transcribed_unitary_pseudogene VAMP9P 2 OTTHUMG00000191884.1 +47153 chr4 HAVANA gene 82344876 82345540 665.0 - 0 ENSG00000273156.1 lincRNA AC124016.2 2 OTTHUMG00000186308.2 +47154 chr4 HAVANA gene 82352498 82374503 6981.0 - 0 ENSG00000138668.18 protein_coding HNRNPD 1 OTTHUMG00000130290.4 +47155 chr4 HAVANA gene 82374301 82384027 906.0 + 0 ENSG00000272677.1 antisense AC124016.1 2 OTTHUMG00000186309.2 +47156 chr4 HAVANA gene 82401578 82402456 879.0 - 0 ENSG00000250325.1 processed_pseudogene IGBP1P4 1 OTTHUMG00000160978.1 pseudo_consens +47157 chr4 ENSEMBL gene 82402638 82402706 69.0 - 0 ENSG00000202440.1 snoRNA RF00150 3 +47158 chr4 HAVANA gene 82422564 82430408 5476.0 - 0 ENSG00000152795.17 protein_coding HNRNPDL 2 OTTHUMG00000130299.6 +47159 chr4 HAVANA gene 82430562 82461091 2025.0 + 0 ENSG00000145293.15 protein_coding ENOPH1 2 OTTHUMG00000130295.4 +47160 chr4 HAVANA gene 82490823 82491635 813.0 - 0 ENSG00000214988.4 processed_pseudogene RPL7AP26 1 OTTHUMG00000157511.1 pseudo_consens,overlapping_locus +47161 chr4 HAVANA gene 82494786 82496278 1493.0 - 0 ENSG00000227304.3 transcribed_processed_pseudogene AC067942.1 1 OTTHUMG00000157512.2 pseudo_consens,overlapping_locus +47162 chr4 HAVANA gene 82483170 82562357 3671.0 - 0 ENSG00000249242.7 protein_coding TMEM150C 1 OTTHUMG00000161083.5 overlapping_locus +47163 chr4 HAVANA gene 82571137 82571814 362.0 + 0 ENSG00000249960.2 processed_pseudogene AC067942.3 1 OTTHUMG00000161120.2 pseudo_consens +47164 chr4 HAVANA gene 82580117 82581384 1268.0 - 0 ENSG00000248113.2 processed_pseudogene AC067942.2 1 OTTHUMG00000161122.2 pseudo_consens +47165 chr4 HAVANA gene 82613113 82621437 910.0 - 0 ENSG00000231782.6 lincRNA LINC00575 2 OTTHUMG00000161121.3 +47166 chr4 HAVANA gene 82691737 82692468 732.0 + 0 ENSG00000270480.1 processed_pseudogene AC073413.1 1 OTTHUMG00000184986.1 pseudo_consens +47167 chr4 ENSEMBL gene 82753337 82753430 94.0 - 0 ENSG00000207746.1 miRNA MIR575 3 +47168 chr4 HAVANA gene 82775461 82776101 360.0 + 0 ENSG00000270842.1 processed_pseudogene AC073413.2 1 OTTHUMG00000185000.1 pseudo_consens +47169 chr4 HAVANA gene 82629539 82798857 4292.0 - 0 ENSG00000145284.11 protein_coding SCD5 2 OTTHUMG00000130293.1 ncRNA_host +47170 chr4 HAVANA gene 82893009 82900960 4397.0 - 0 ENSG00000251022.6 antisense THAP9-AS1 2 OTTHUMG00000160729.2 overlapping_locus +47171 chr4 HAVANA gene 82818661 82901166 9145.0 - 0 ENSG00000138674.16 protein_coding SEC31A 1 OTTHUMG00000130297.11 overlapping_locus +47172 chr4 HAVANA gene 82900684 82919969 4332.0 + 0 ENSG00000168152.12 protein_coding THAP9 2 OTTHUMG00000130291.2 +47173 chr4 ENSEMBL gene 82944738 82944845 108.0 - 0 ENSG00000199530.1 misc_RNA RF00019 3 +47174 chr4 ENSEMBL gene 83003412 83003517 106.0 + 0 ENSG00000251874.1 snRNA RNU6-615P 3 +47175 chr4 HAVANA gene 82909973 83012926 6768.0 - 0 ENSG00000189308.10 protein_coding LIN54 2 OTTHUMG00000130287.2 ncRNA_host +47176 chr4 HAVANA gene 83034447 83075818 3566.0 + 0 ENSG00000138663.8 protein_coding COPS4 1 OTTHUMG00000130298.3 +47177 chr4 HAVANA gene 83090048 83137075 3853.0 - 0 ENSG00000145287.10 protein_coding PLAC8 1 OTTHUMG00000130294.2 +47178 chr4 HAVANA gene 83237303 83237444 142.0 + 0 ENSG00000250677.1 processed_pseudogene AC114781.3 1 OTTHUMG00000161155.1 pseudo_consens +47179 chr4 HAVANA gene 83233512 83247213 394.0 - 0 ENSG00000250057.1 lincRNA AC114781.2 1 OTTHUMG00000161156.3 +47180 chr4 HAVANA gene 83247179 83248206 1028.0 + 0 ENSG00000248401.2 processed_pseudogene AC114781.1 1 OTTHUMG00000161152.2 pseudo_consens +47181 chr4 HAVANA gene 83261536 83284914 2774.0 - 0 ENSG00000173085.14 protein_coding COQ2 2 OTTHUMG00000160940.6 +47182 chr4 HAVANA gene 83292461 83335153 4721.0 - 0 ENSG00000173083.14 protein_coding HPSE 1 OTTHUMG00000130425.5 +47183 chr4 HAVANA gene 83369416 83369523 108.0 - 0 ENSG00000274154.1 processed_pseudogene AC114781.5 2 OTTHUMG00000187579.1 +47184 chr4 HAVANA gene 83377363 83378076 639.0 - 0 ENSG00000251647.2 processed_pseudogene AC114781.4 1 OTTHUMG00000161153.2 pseudo_consens +47185 chr4 HAVANA gene 83407343 83455856 3713.0 - 0 ENSG00000163312.10 protein_coding HELQ 1 OTTHUMG00000130423.5 +47186 chr4 HAVANA gene 83455932 83469735 4866.0 + 0 ENSG00000163319.10 protein_coding MRPS18C 1 OTTHUMG00000130430.4 +47187 chr4 HAVANA gene 83477524 83478424 901.0 + 0 ENSG00000213608.5 processed_pseudogene SLC25A14P1 1 OTTHUMG00000161154.2 pseudo_consens +47188 chr4 HAVANA gene 83502699 83503034 336.0 + 0 ENSG00000239525.1 processed_pseudogene RPL30P5 1 OTTHUMG00000157514.1 pseudo_consens +47189 chr4 HAVANA gene 83459517 83523348 7777.0 - 0 ENSG00000163322.13 protein_coding ABRAXAS1 2 OTTHUMG00000130429.17 +47190 chr4 HAVANA gene 83535914 83605875 3468.0 + 0 ENSG00000138678.10 protein_coding GPAT3 2 OTTHUMG00000130431.3 +47191 chr4 ENSEMBL gene 83636196 83636290 95.0 - 0 ENSG00000201633.1 misc_RNA RF00019 3 +47192 chr4 HAVANA gene 83668510 83731755 791.0 - 0 ENSG00000249171.1 lincRNA AC021192.1 2 OTTHUMG00000161151.1 +47193 chr4 ENSEMBL gene 84233657 84233763 107.0 + 0 ENSG00000200108.1 snRNA RNU6-774P 3 +47194 chr4 HAVANA gene 84244003 84245488 1486.0 + 0 ENSG00000214980.4 processed_pseudogene AC025538.1 2 OTTHUMG00000160895.1 +47195 chr4 HAVANA gene 83796436 84293412 3588.0 - 0 ENSG00000250546.5 processed_transcript AC079160.1 2 OTTHUMG00000160961.1 +47196 chr4 HAVANA gene 84371393 84380189 702.0 - 0 ENSG00000248749.1 lincRNA AC104063.1 2 OTTHUMG00000160894.1 +47197 chr4 HAVANA gene 84491987 84498450 3086.0 - 0 ENSG00000163623.9 protein_coding NKX6-1 2 OTTHUMG00000130426.4 +47198 chr4 HAVANA gene 84544304 84544519 216.0 - 0 ENSG00000258013.2 processed_pseudogene RPL3P13 1 OTTHUMG00000170561.2 pseudo_consens +47199 chr4 HAVANA gene 84582979 84651338 4461.0 + 0 ENSG00000163624.5 protein_coding CDS1 2 OTTHUMG00000130428.2 +47200 chr4 ENSEMBL gene 84687725 84688000 276.0 - 0 ENSG00000239466.3 misc_RNA RN7SL552P 3 +47201 chr4 HAVANA gene 84803258 84810391 493.0 + 0 ENSG00000251260.1 antisense WDFY3-AS1 1 OTTHUMG00000160941.2 +47202 chr4 ENSEMBL gene 84886386 84886486 101.0 - 0 ENSG00000252062.1 snRNA RNU6-469P 3 +47203 chr4 HAVANA gene 84669610 84966391 16856.0 - 0 ENSG00000163625.15 protein_coding WDFY3 2 OTTHUMG00000130424.5 ncRNA_host +47204 chr4 HAVANA gene 84965682 85011277 6203.0 + 0 ENSG00000180769.8 processed_transcript WDFY3-AS2 2 OTTHUMG00000141281.4 +47205 chr4 ENSEMBL gene 85100496 85100823 328.0 + 0 ENSG00000201901.1 misc_RNA RN7SKP48 3 +47206 chr4 HAVANA gene 85246157 85246912 756.0 + 0 ENSG00000248725.3 processed_pseudogene AC097488.1 2 OTTHUMG00000160956.3 +47207 chr4 ENSEMBL gene 85722468 85722533 66.0 + 0 ENSG00000266421.3 miRNA MIR4451 3 +47208 chr4 HAVANA gene 85475114 86002670 7908.0 + 0 ENSG00000138639.17 protein_coding ARHGAP24 2 OTTHUMG00000130427.5 ncRNA_host +47209 chr4 HAVANA gene 86117912 86219926 1100.0 + 0 ENSG00000250062.5 antisense AC104827.1 2 OTTHUMG00000161054.1 +47210 chr4 ENSEMBL gene 86336318 86336614 297.0 - 0 ENSG00000252757.1 misc_RNA RN7SKP96 3 +47211 chr4 ENSEMBL gene 86542482 86542552 71.0 - 0 ENSG00000266515.1 miRNA MIR4452 3 +47212 chr4 HAVANA gene 85990007 86594625 42646.0 - 0 ENSG00000109339.21 protein_coding MAPK10 2 OTTHUMG00000130604.48 ncRNA_host +47213 chr4 HAVANA gene 86594315 86815171 9496.0 + 0 ENSG00000163629.12 protein_coding PTPN13 1 OTTHUMG00000160968.2 +47214 chr4 HAVANA gene 86823468 86849263 1502.0 - 0 ENSG00000145283.7 protein_coding SLC10A6 2 OTTHUMG00000130596.3 +47215 chr4 HAVANA gene 86870191 86871404 861.0 + 0 ENSG00000243312.3 processed_pseudogene AC093827.1 1 OTTHUMG00000157516.3 pseudo_consens +47216 chr4 HAVANA gene 86876338 86876652 315.0 + 0 ENSG00000250202.2 processed_pseudogene AC093827.2 1 OTTHUMG00000160967.2 pseudo_consens +47217 chr4 HAVANA gene 86876205 86892422 2100.0 - 0 ENSG00000163633.11 protein_coding C4orf36 2 OTTHUMG00000130597.4 overlapping_locus +47218 chr4 HAVANA gene 86913266 86914817 1110.0 - 0 ENSG00000251411.1 processed_pseudogene AC093827.3 1 OTTHUMG00000160970.1 pseudo_consens,overlapping_locus +47219 chr4 HAVANA gene 86886472 86936178 2497.0 - 0 ENSG00000285458.1 protein_coding AC093827.5 2 OTTHUMG00000192455.1 overlapping_locus +47220 chr4 HAVANA gene 86924630 86936202 2801.0 - 0 ENSG00000284968.1 antisense AC093827.4 2 OTTHUMG00000192456.1 overlapping_locus +47221 chr4 HAVANA gene 86949669 86950113 445.0 - 0 ENSG00000235043.3 processed_pseudogene TECRP1 1 OTTHUMG00000160969.1 pseudo_consens +47222 chr4 HAVANA gene 86935002 87141054 10733.0 + 0 ENSG00000172493.20 protein_coding AFF1 2 OTTHUMG00000130603.8 +47223 chr4 HAVANA gene 87166844 87167734 891.0 + 0 ENSG00000248196.1 processed_pseudogene AC092658.1 1 OTTHUMG00000160971.1 pseudo_consens +47224 chr4 HAVANA gene 87207092 87208086 995.0 + 0 ENSG00000248180.1 processed_pseudogene GAPDHP60 1 OTTHUMG00000159978.1 pseudo_consens +47225 chr4 HAVANA gene 87160103 87240314 7354.0 - 0 ENSG00000145332.13 protein_coding KLHL8 1 OTTHUMG00000130593.2 +47226 chr4 HAVANA gene 87261931 87266822 257.0 - 0 ENSG00000250572.1 lincRNA AC108516.1 2 OTTHUMG00000161058.1 +47227 chr4 ENSEMBL gene 87300495 87300583 89.0 - 0 ENSG00000263981.1 miRNA MIR5705 3 +47228 chr4 HAVANA gene 87303789 87322906 2397.0 - 0 ENSG00000170509.11 protein_coding HSD17B13 2 OTTHUMG00000130602.2 overlapping_locus +47229 chr4 HAVANA gene 87317170 87345210 349.0 - 0 ENSG00000255723.1 processed_transcript AC108516.2 2 OTTHUMG00000168283.1 overlapping_locus +47230 chr4 ENSEMBL gene 87386883 87387174 292.0 - 0 ENSG00000240966.3 misc_RNA RN7SL681P 3 +47231 chr4 HAVANA gene 87336610 87391386 2435.0 - 0 ENSG00000198189.10 protein_coding HSD17B11 2 OTTHUMG00000130594.5 ncRNA_host,overlapping_locus +47232 chr4 HAVANA gene 87410644 87411388 745.0 + 0 ENSG00000249262.2 processed_pseudogene AC112250.1 1 OTTHUMG00000161059.2 pseudo_consens +47233 chr4 HAVANA gene 87422582 87459454 3184.0 + 0 ENSG00000170502.12 protein_coding NUDT9 2 OTTHUMG00000130591.4 +47234 chr4 HAVANA gene 87460807 87462280 491.0 - 0 ENSG00000272856.1 lincRNA AC112250.2 2 OTTHUMG00000186311.1 +47235 chr4 HAVANA gene 87473335 87531061 3477.0 - 0 ENSG00000152583.12 protein_coding SPARCL1 1 OTTHUMG00000130605.5 +47236 chr4 HAVANA gene 87608553 87616910 4344.0 + 0 ENSG00000152591.13 protein_coding DSPP 2 OTTHUMG00000161061.4 +47237 chr4 HAVANA gene 87650307 87664361 2682.0 + 0 ENSG00000152592.13 protein_coding DMP1 2 OTTHUMG00000130598.2 +47238 chr4 HAVANA gene 87568035 87733956 1825.0 - 0 ENSG00000249001.5 antisense AC093895.1 2 OTTHUMG00000161060.1 +47239 chr4 ENSEMBL gene 87743952 87744053 102.0 - 0 ENSG00000200024.1 misc_RNA RF00019 3 +47240 chr4 HAVANA gene 87785920 87786371 452.0 - 0 ENSG00000249973.2 processed_pseudogene CHCHD2P7 1 OTTHUMG00000160999.2 pseudo_consens +47241 chr4 HAVANA gene 87799581 87812435 1546.0 + 0 ENSG00000029559.6 protein_coding IBSP 2 OTTHUMG00000130600.3 +47242 chr4 HAVANA gene 87821411 87846817 2477.0 + 0 ENSG00000152595.16 protein_coding MEPE 1 OTTHUMG00000130592.5 +47243 chr4 HAVANA gene 87891843 87894015 2173.0 + 0 ENSG00000183199.6 processed_pseudogene HSP90AB3P 1 OTTHUMG00000160981.1 pseudo_consens +47244 chr4 HAVANA gene 87975650 87983426 2321.0 + 0 ENSG00000118785.13 protein_coding SPP1 2 OTTHUMG00000130599.5 +47245 chr4 ENSEMBL gene 88000237 88000401 165.0 + 0 ENSG00000202000.1 snRNA RNU1-36P 3 +47246 chr4 HAVANA gene 88007668 88077777 5498.0 + 0 ENSG00000118762.7 protein_coding PKD2 1 OTTHUMG00000160982.5 +47247 chr4 HAVANA gene 88163579 88163967 389.0 + 0 ENSG00000241853.1 processed_pseudogene AC097484.1 1 OTTHUMG00000157518.1 pseudo_consens +47248 chr4 ENSEMBL gene 88201703 88201810 108.0 + 0 ENSG00000201707.1 snRNA RNU6-818P 3 +47249 chr4 ENSEMBL gene 88206427 88206552 126.0 - 0 ENSG00000221440.1 snRNA RNU6ATAC31P 3 +47250 chr4 HAVANA gene 88220569 88223837 251.0 - 0 ENSG00000251285.2 processed_pseudogene AC097484.2 2 OTTHUMG00000161000.2 overlapping_locus +47251 chr4 ENSEMBL gene 88226729 88226829 101.0 + 0 ENSG00000199326.1 snRNA RNU6-1298P 3 +47252 chr4 HAVANA gene 88090264 88231322 4848.0 - 0 ENSG00000118777.11 protein_coding ABCG2 1 OTTHUMG00000130601.6 ncRNA_host,overlapping_locus +47253 chr4 ENSEMBL gene 88275205 88275308 104.0 - 0 ENSG00000200469.1 snRNA RNU6-112P 3 +47254 chr4 HAVANA gene 88257620 88284769 11371.0 - 0 ENSG00000163644.14 protein_coding PPM1K 1 OTTHUMG00000130952.7 ncRNA_host +47255 chr4 ENSEMBL gene 88330176 88330278 103.0 - 0 ENSG00000207480.1 misc_RNA RF00019 3 +47256 chr4 HAVANA gene 88284942 88331421 1654.0 + 0 ENSG00000246375.2 lincRNA AC107067.1 2 OTTHUMG00000160984.1 +47257 chr4 HAVANA gene 88378739 88443111 5793.0 + 0 ENSG00000138642.14 protein_coding HERC6 2 OTTHUMG00000160983.6 +47258 chr4 HAVANA gene 88457117 88506163 4766.0 + 0 ENSG00000138646.8 protein_coding HERC5 2 OTTHUMG00000130953.5 +47259 chr4 HAVANA gene 88508591 88510403 1813.0 - 0 ENSG00000249934.2 processed_pseudogene NCOA4P2 1 OTTHUMG00000160997.3 pseudo_consens +47260 chr4 HAVANA gene 88521573 88521789 217.0 - 0 ENSG00000255072.1 protein_coding PIGY 2 OTTHUMG00000166563.1 overlapping_locus +47261 chr4 HAVANA gene 88520985 88523813 1361.0 - 0 ENSG00000145337.4 protein_coding PYURF 2 OTTHUMG00000130949.1 overlapping_locus +47262 chr4 HAVANA gene 88523826 88524983 335.0 + 0 ENSG00000285122.1 lincRNA AC083829.2 2 OTTHUMG00000192439.1 overlapping_locus +47263 chr4 HAVANA gene 88527160 88528170 657.0 + 0 ENSG00000249755.2 processed_pseudogene AC083829.1 1 OTTHUMG00000160998.3 pseudo_consens,overlapping_locus +47264 chr4 ENSEMBL gene 88583666 88583972 307.0 - 0 ENSG00000252322.1 misc_RNA RN7SKP244 3 +47265 chr4 HAVANA gene 88523810 88649847 582.0 + 0 ENSG00000285385.1 protein_coding AC098582.1 2 OTTHUMG00000192438.1 +47266 chr4 ENSEMBL gene 88684848 88684954 107.0 - 0 ENSG00000207524.1 snRNA RNU6-33P 3 +47267 chr4 HAVANA gene 88695915 88697829 1915.0 - 0 ENSG00000177432.7 protein_coding NAP1L5 2 OTTHUMG00000130950.2 retrogene +47268 chr4 HAVANA gene 88592423 88708542 6981.0 + 0 ENSG00000138641.16 protein_coding HERC3 2 OTTHUMG00000150436.8 overlapping_locus +47269 chr4 ENSEMBL gene 88710147 88710265 119.0 + 0 ENSG00000278151.1 misc_RNA RF02114 3 +47270 chr4 ENSEMBL gene 88723209 88723316 108.0 + 0 ENSG00000276003.1 misc_RNA RF02115 3 +47271 chr4 HAVANA gene 88709789 88730103 4510.0 + 0 ENSG00000248019.2 antisense FAM13A-AS1 2 OTTHUMG00000161035.1 ncRNA_host +47272 chr4 HAVANA gene 88725955 89111398 13215.0 - 0 ENSG00000138640.14 protein_coding FAM13A 2 OTTHUMG00000161006.2 +47273 chr4 HAVANA gene 89111500 89114899 3217.0 + 0 ENSG00000180346.3 protein_coding TIGD2 2 OTTHUMG00000130946.3 +47274 chr4 HAVANA gene 89119284 89119871 588.0 + 0 ENSG00000270720.1 lincRNA AC104785.1 2 OTTHUMG00000185169.1 +47275 chr4 ENSEMBL gene 89130852 89130953 102.0 + 0 ENSG00000212226.1 snRNA RNU6-907P 3 +47276 chr4 HAVANA gene 89236386 89308010 15205.0 - 0 ENSG00000185477.4 protein_coding GPRIN3 2 OTTHUMG00000161044.2 +47277 chr4 HAVANA gene 89551356 89726752 6069.0 + 0 ENSG00000251095.6 antisense AC097478.1 2 OTTHUMG00000161187.3 +47278 chr4 HAVANA gene 89743792 89744305 514.0 + 0 ENSG00000274238.1 antisense AC097478.2 2 OTTHUMG00000187515.1 +47279 chr4 HAVANA gene 89748283 89749154 872.0 + 0 ENSG00000276542.1 antisense AC097478.3 2 OTTHUMG00000187517.1 overlapping_locus +47280 chr4 HAVANA gene 89747802 89755853 522.0 + 0 ENSG00000277695.1 antisense AC097478.4 2 OTTHUMG00000187516.1 overlapping_locus +47281 chr4 HAVANA gene 89724099 89838315 4014.0 - 0 ENSG00000145335.15 protein_coding SNCA 2 OTTHUMG00000130948.6 +47282 chr4 HAVANA gene 89836408 89841978 2990.0 + 0 ENSG00000247775.2 antisense SNCA-AS1 2 OTTHUMG00000161186.1 +47283 chr4 HAVANA gene 89879532 89954629 5510.0 + 0 ENSG00000138722.9 protein_coding MMRN1 1 OTTHUMG00000130947.2 +47284 chr4 ENSEMBL gene 90370123 90370427 305.0 + 0 ENSG00000252087.1 misc_RNA RN7SKP248 3 +47285 chr4 HAVANA gene 90682996 90683123 128.0 + 0 ENSG00000251401.2 processed_pseudogene AC093729.1 1 OTTHUMG00000161033.2 pseudo_consens,overlapping_locus +47286 chr4 HAVANA gene 90838903 90839037 135.0 - 0 ENSG00000187653.11 processed_pseudogene TMSB4XP8 2 OTTHUMG00000130951.3 +47287 chr4 HAVANA gene 91108023 91112790 270.0 - 0 ENSG00000248984.1 antisense AC004054.1 2 OTTHUMG00000161005.2 +47288 chr4 HAVANA gene 91319034 91325306 375.0 - 0 ENSG00000249049.1 antisense AC074124.1 1 OTTHUMG00000161004.2 +47289 chr4 HAVANA gene 90127535 91601913 10428.0 + 0 ENSG00000184305.15 protein_coding CCSER1 1 OTTHUMG00000160950.6 ncRNA_host,overlapping_locus +47290 chr4 HAVANA gene 91603275 91605292 2018.0 + 0 ENSG00000279013.1 TEC AC110774.1 2 OTTHUMG00000176035.1 +47291 chr4 HAVANA gene 91885046 91885254 209.0 - 0 ENSG00000249891.2 processed_pseudogene KRT19P6 2 OTTHUMG00000161034.2 +47292 chr4 HAVANA gene 91887886 91904335 577.0 + 0 ENSG00000249052.1 lincRNA AC093810.1 1 OTTHUMG00000161032.2 +47293 chr4 HAVANA gene 92182477 92184052 1576.0 - 0 ENSG00000248817.1 processed_pseudogene PMPCAP1 1 OTTHUMG00000160921.1 pseudo_consens +47294 chr4 HAVANA gene 92260367 92260751 385.0 - 0 ENSG00000280056.1 TEC AC097520.1 2 OTTHUMG00000176166.1 +47295 chr4 HAVANA gene 92268767 92277075 616.0 - 0 ENSG00000249152.1 lincRNA LNCPRESS2 2 OTTHUMG00000160917.1 +47296 chr4 HAVANA gene 92297251 92304178 592.0 - 0 ENSG00000248511.1 lincRNA AC112695.1 1 OTTHUMG00000160923.1 +47297 chr4 HAVANA gene 92702345 92702659 315.0 + 0 ENSG00000251449.2 processed_pseudogene MTND1P19 2 OTTHUMG00000160924.2 overlapping_locus +47298 chr4 HAVANA gene 92821986 92822918 933.0 - 0 ENSG00000249239.2 processed_pseudogene AC095059.2 1 OTTHUMG00000160922.2 pseudo_consens +47299 chr4 HAVANA gene 92833685 92838842 349.0 - 0 ENSG00000248627.1 antisense AC095059.1 2 OTTHUMG00000160918.1 +47300 chr4 HAVANA gene 92884663 92885107 445.0 + 0 ENSG00000248750.2 processed_pseudogene AC020699.1 1 OTTHUMG00000160919.2 pseudo_consens,overlapping_locus +47301 chr4 HAVANA gene 93318623 93319786 441.0 - 0 ENSG00000250908.1 antisense AC110800.1 1 OTTHUMG00000160920.2 +47302 chr4 HAVANA gene 92303622 93810157 10951.0 + 0 ENSG00000152208.12 protein_coding GRID2 2 OTTHUMG00000130975.7 overlapping_locus +47303 chr4 ENSEMBL gene 93820171 93820280 110.0 + 0 ENSG00000252342.1 rRNA_pseudogene RNA5SP164 3 +47304 chr4 HAVANA gene 93828753 93830964 2212.0 + 0 ENSG00000172238.4 protein_coding ATOH1 2 OTTHUMG00000130972.1 +47305 chr4 HAVANA gene 94195940 94196513 574.0 - 0 ENSG00000250897.2 processed_pseudogene HMGB3P15 1 OTTHUMG00000160930.2 pseudo_consens,overlapping_locus +47306 chr4 HAVANA gene 94117792 94207556 1042.0 - 0 ENSG00000246541.2 lincRNA AC096746.1 2 OTTHUMG00000161244.2 overlapping_locus +47307 chr4 HAVANA gene 94207611 94291292 6313.0 + 0 ENSG00000163104.17 protein_coding SMARCAD1 1 OTTHUMG00000130971.12 +47308 chr4 HAVANA gene 94298535 94342876 2111.0 - 0 ENSG00000163106.10 protein_coding HPGDS 2 OTTHUMG00000130974.4 +47309 chr4 HAVANA gene 94369833 94370163 331.0 + 0 ENSG00000241103.1 processed_pseudogene AC109925.1 1 OTTHUMG00000157522.1 pseudo_consens +47310 chr4 HAVANA gene 94451857 94668227 11090.0 + 0 ENSG00000163110.14 protein_coding PDLIM5 1 OTTHUMG00000130973.10 +47311 chr4 HAVANA gene 94675245 94702570 215.0 + 0 ENSG00000249951.1 lincRNA AC108067.1 2 OTTHUMG00000161245.2 +47312 chr4 HAVANA gene 94743800 94757533 511.0 - 0 ENSG00000249599.1 lincRNA BMPR1B-DT 1 OTTHUMG00000161193.2 +47313 chr4 HAVANA gene 94757968 95158448 6312.0 + 0 ENSG00000138696.10 protein_coding BMPR1B 2 OTTHUMG00000130991.5 +47314 chr4 HAVANA gene 95162504 95549206 10685.0 - 0 ENSG00000182168.14 protein_coding UNC5C 1 OTTHUMG00000130989.4 +47315 chr4 HAVANA gene 95549129 95552457 3329.0 + 0 ENSG00000271474.1 antisense AC106881.1 2 OTTHUMG00000185100.1 +47316 chr4 HAVANA gene 95644952 95645293 342.0 - 0 ENSG00000242936.1 processed_pseudogene RPL30P6 1 OTTHUMG00000157526.1 pseudo_consens +47317 chr4 HAVANA gene 95840019 95841474 1456.0 + 0 ENSG00000163114.5 protein_coding PDHA2 2 OTTHUMG00000130990.1 retrogene +47318 chr4 ENSEMBL gene 95868667 95868764 98.0 - 0 ENSG00000200622.1 snRNA RNU6-1059P 3 +47319 chr4 ENSEMBL gene 96152297 96152403 107.0 - 0 ENSG00000201744.1 snRNA RNU6-34P 3 +47320 chr4 HAVANA gene 96212279 96213100 822.0 + 0 ENSG00000250655.1 processed_pseudogene AC096661.1 1 OTTHUMG00000160944.1 pseudo_consens +47321 chr4 ENSEMBL gene 96348734 96349038 305.0 - 0 ENSG00000201640.2 misc_RNA RN7SKP28 3 +47322 chr4 HAVANA gene 96310701 96818864 2423.0 + 0 ENSG00000248510.2 lincRNA LINC02267 2 OTTHUMG00000161181.2 +47323 chr4 HAVANA gene 96902801 96903050 250.0 + 0 ENSG00000236764.4 processed_pseudogene COX7A2P2 1 OTTHUMG00000160945.2 pseudo_consens +47324 chr4 HAVANA gene 97120701 97135059 525.0 + 0 ENSG00000253170.1 lincRNA AC108515.1 2 OTTHUMG00000164937.1 +47325 chr4 HAVANA gene 97366926 97490164 537.0 + 0 ENSG00000251620.1 antisense STPG2-AS1 2 OTTHUMG00000161180.2 +47326 chr4 HAVANA gene 97334635 97633823 770.0 - 0 ENSG00000254044.5 sense_overlapping AC034154.1 2 OTTHUMG00000164938.1 overlapping_locus +47327 chr4 HAVANA gene 97916353 97917401 1049.0 - 0 ENSG00000250293.1 processed_pseudogene CRYZP2 1 OTTHUMG00000161185.1 pseudo_consens,overlapping_locus +47328 chr4 HAVANA gene 98025390 98026240 851.0 + 0 ENSG00000242697.2 processed_pseudogene RPL5P12 1 OTTHUMG00000157528.2 pseudo_consens +47329 chr4 HAVANA gene 98048555 98049043 489.0 + 0 ENSG00000214904.5 processed_pseudogene DUTP8 1 OTTHUMG00000160959.3 pseudo_consens +47330 chr4 HAVANA gene 97184093 98143240 5836.0 - 0 ENSG00000163116.9 protein_coding STPG2 2 OTTHUMG00000131009.3 overlapping_locus +47331 chr4 HAVANA gene 98251688 98261630 397.0 - 0 ENSG00000214559.3 antisense AC019077.1 2 OTTHUMG00000160986.1 +47332 chr4 HAVANA gene 98409290 98409763 474.0 + 0 ENSG00000242318.1 processed_pseudogene AC058823.1 1 OTTHUMG00000157532.1 pseudo_consens,overlapping_locus +47333 chr4 HAVANA gene 98261384 98443861 5424.0 + 0 ENSG00000138698.14 protein_coding RAP1GDS1 1 OTTHUMG00000160987.12 overlapping_locus +47334 chr4 HAVANA gene 98496364 98509935 489.0 + 0 ENSG00000251523.1 antisense AC108159.1 2 OTTHUMG00000161091.1 +47335 chr4 HAVANA gene 98470367 98658629 7430.0 - 0 ENSG00000168785.7 protein_coding TSPAN5 2 OTTHUMG00000131008.4 +47336 chr4 HAVANA gene 98658904 98664550 5647.0 + 0 ENSG00000260641.1 antisense AC114811.2 2 OTTHUMG00000175889.1 +47337 chr4 HAVANA gene 98713804 98713971 168.0 - 0 ENSG00000249764.1 processed_pseudogene AC114811.1 1 OTTHUMG00000161087.1 pseudo_consens +47338 chr4 HAVANA gene 98740742 98741231 490.0 + 0 ENSG00000227118.3 processed_pseudogene BTF3P13 1 OTTHUMG00000161089.1 pseudo_consens +47339 chr4 HAVANA gene 98909537 98909848 312.0 - 0 ENSG00000249055.1 transcribed_processed_pseudogene TBCAP3 2 OTTHUMG00000161088.1 overlapping_locus +47340 chr4 HAVANA gene 98871684 98930637 14067.0 - 0 ENSG00000151247.12 protein_coding EIF4E 1 OTTHUMG00000161090.2 overlapping_locus +47341 chr4 HAVANA gene 98955982 98956767 473.0 + 0 ENSG00000214886.4 processed_pseudogene FAM177A1P1 2 OTTHUMG00000161228.2 overlapping_locus +47342 chr4 ENSEMBL gene 98966815 98966873 59.0 - 0 ENSG00000252548.1 snRNA RNU7-149P 3 +47343 chr4 HAVANA gene 98976800 98977117 318.0 - 0 ENSG00000251437.1 processed_pseudogene NDUFS5P4 2 OTTHUMG00000161233.1 +47344 chr4 HAVANA gene 98928897 98994994 622.0 + 0 ENSG00000263923.1 antisense AC019131.1 2 OTTHUMG00000178393.1 overlapping_locus +47345 chr4 ENSEMBL gene 98997387 98997460 74.0 + 0 ENSG00000265213.1 miRNA MIR3684 3 +47346 chr4 HAVANA gene 99022311 99023131 821.0 - 0 ENSG00000250496.2 processed_pseudogene ABT1P1 1 OTTHUMG00000161229.2 pseudo_consens +47347 chr4 HAVANA gene 98995620 99062813 4117.0 + 0 ENSG00000164024.11 protein_coding METAP1 1 OTTHUMG00000161231.2 ncRNA_host +47348 chr4 HAVANA gene 99067256 99068125 870.0 - 0 ENSG00000272777.1 lincRNA AC019131.2 2 OTTHUMG00000186323.1 +47349 chr4 HAVANA gene 99070978 99088801 4866.0 - 0 ENSG00000197894.10 protein_coding ADH5 2 OTTHUMG00000161230.10 +47350 chr4 HAVANA gene 99123657 99157792 2453.0 - 0 ENSG00000198099.8 protein_coding ADH4 1 OTTHUMG00000161227.3 +47351 chr4 HAVANA gene 99160514 99161645 1132.0 - 0 ENSG00000249065.2 transcribed_processed_pseudogene PCNAP1 1 OTTHUMG00000161312.2 pseudo_consens +47352 chr4 HAVANA gene 99202638 99219537 4401.0 - 0 ENSG00000172955.17 protein_coding ADH6 1 OTTHUMG00000131024.8 +47353 chr4 HAVANA gene 99276367 99291028 2258.0 - 0 ENSG00000187758.7 protein_coding ADH1A 2 OTTHUMG00000131026.3 +47354 chr4 HAVANA gene 99088857 99301356 7021.0 + 0 ENSG00000246090.6 antisense AP002026.1 2 OTTHUMG00000161232.2 +47355 chr4 HAVANA gene 99304964 99352760 10777.0 - 0 ENSG00000196616.13 protein_coding ADH1B 2 OTTHUMG00000161413.3 +47356 chr4 HAVANA gene 99336492 99353027 1860.0 - 0 ENSG00000248144.5 protein_coding ADH1C 2 OTTHUMG00000161422.6 +47357 chr4 HAVANA gene 99412261 99435737 3108.0 - 0 ENSG00000196344.11 protein_coding ADH7 2 OTTHUMG00000159318.3 +47358 chr4 HAVANA gene 99469598 99498698 658.0 - 0 ENSG00000250300.1 unprocessed_pseudogene AP001960.1 2 OTTHUMG00000161520.1 +47359 chr4 HAVANA gene 99511004 99542303 3261.0 + 0 ENSG00000138813.9 protein_coding C4orf17 2 OTTHUMG00000131027.3 +47360 chr4 HAVANA gene 99546709 99564032 4379.0 - 0 ENSG00000145331.13 protein_coding TRMT10A 2 OTTHUMG00000131025.4 +47361 chr4 HAVANA gene 99563761 99623999 5398.0 + 0 ENSG00000138823.13 protein_coding MTTP 1 OTTHUMG00000131023.5 +47362 chr4 HAVANA gene 99594799 99625913 359.0 - 0 ENSG00000248676.1 antisense AC083902.1 2 OTTHUMG00000161582.1 +47363 chr4 HAVANA gene 99636529 99654648 10086.0 - 0 ENSG00000248713.1 protein_coding C4orf54 1 OTTHUMG00000161583.1 +47364 chr4 HAVANA gene 99844138 99844696 559.0 + 0 ENSG00000279913.1 TEC AP001962.1 2 OTTHUMG00000161551.1 overlapping_locus +47365 chr4 HAVANA gene 99816833 99870154 4548.0 + 0 ENSG00000070190.12 protein_coding DAPP1 2 OTTHUMG00000160974.2 overlapping_locus +47366 chr4 HAVANA gene 99878336 99894490 4226.0 - 0 ENSG00000109270.12 protein_coding LAMTOR3 2 OTTHUMG00000131050.3 +47367 chr4 HAVANA gene 99942081 99942522 442.0 - 0 ENSG00000279098.1 TEC AC097460.3 2 OTTHUMG00000161550.1 overlapping_locus +47368 chr4 HAVANA gene 99896248 99946726 13078.0 - 0 ENSG00000164031.16 protein_coding DNAJB14 1 OTTHUMG00000131049.4 overlapping_locus +47369 chr4 HAVANA gene 99948086 99950388 2303.0 - 0 ENSG00000164032.11 protein_coding H2AFZ 1 OTTHUMG00000131048.5 +47370 chr4 HAVANA gene 99990737 99991477 741.0 - 0 ENSG00000250403.1 processed_pseudogene AC097460.2 1 OTTHUMG00000161021.1 pseudo_consens +47371 chr4 HAVANA gene 100041841 100042104 264.0 - 0 ENSG00000248820.2 processed_pseudogene DYNLL1P6 1 OTTHUMG00000161020.2 pseudo_consens +47372 chr4 HAVANA gene 100185870 100190782 2994.0 - 0 ENSG00000145358.6 protein_coding DDIT4L 2 OTTHUMG00000161019.2 +47373 chr4 HAVANA gene 99950006 100195099 1714.0 + 0 ENSG00000245322.6 antisense AC097460.1 1 OTTHUMG00000161022.2 overlapping_locus +47374 chr4 HAVANA gene 100190033 100215505 526.0 + 0 ENSG00000249710.1 antisense AP001961.1 2 OTTHUMG00000161023.1 overlapping_locus +47375 chr4 HAVANA gene 100660279 100675113 824.0 - 0 ENSG00000250223.1 sense_intronic LINC01216 2 OTTHUMG00000161053.2 overlapping_locus +47376 chr4 HAVANA gene 100778582 100791235 562.0 - 0 ENSG00000251219.1 sense_intronic LINC01217 2 OTTHUMG00000161750.1 overlapping_locus +47377 chr4 HAVANA gene 100812255 100814280 481.0 - 0 ENSG00000251636.1 sense_intronic LINC01218 1 OTTHUMG00000161011.1 overlapping_locus +47378 chr4 HAVANA gene 100395341 100880126 5243.0 - 0 ENSG00000164035.9 protein_coding EMCN 2 OTTHUMG00000131051.6 overlapping_locus +47379 chr4 ENSEMBL gene 101240795 101240872 78.0 - 0 ENSG00000273882.1 miRNA MIR8066 3 +47380 chr4 ENSEMBL gene 101330302 101330414 113.0 - 0 ENSG00000221265.1 miRNA MIR1255A 3 +47381 chr4 HAVANA gene 101023409 101348278 5213.0 - 0 ENSG00000138814.16 protein_coding PPP3CA 1 OTTHUMG00000133839.7 ncRNA_host +47382 chr4 HAVANA gene 101347780 101348883 790.0 + 0 ENSG00000254531.1 lincRNA FLJ20021 1 OTTHUMG00000166283.1 +47383 chr4 ENSEMBL gene 101723876 101723980 105.0 + 0 ENSG00000199529.1 snRNA RNU6-462P 3 +47384 chr4 HAVANA gene 101972423 101972798 376.0 + 0 ENSG00000251149.1 processed_pseudogene MTND5P5 2 OTTHUMG00000160965.1 overlapping_locus +47385 chr4 HAVANA gene 101976894 102036903 603.0 - 0 ENSG00000251309.1 antisense AP002075.1 2 OTTHUMG00000160964.1 +47386 chr4 HAVANA gene 101411286 102074812 6144.0 + 0 ENSG00000153064.11 protein_coding BANK1 2 OTTHUMG00000160958.2 ncRNA_host,overlapping_locus +47387 chr4 ENSEMBL gene 102348392 102348691 300.0 - 0 ENSG00000241144.3 misc_RNA RN7SL728P 3 +47388 chr4 HAVANA gene 102251041 102431258 6480.0 - 0 ENSG00000138821.12 protein_coding SLC39A8 2 OTTHUMG00000131120.2 ncRNA_host,overlapping_locus +47389 chr4 HAVANA gene 102418602 102450010 992.0 - 0 ENSG00000248161.5 lincRNA AC098487.1 2 OTTHUMG00000131122.10 overlapping_locus +47390 chr4 HAVANA gene 102461250 102462152 903.0 + 0 ENSG00000251572.2 processed_pseudogene AF213884.2 2 OTTHUMG00000161013.2 +47391 chr4 HAVANA gene 102500841 102501319 479.0 - 0 ENSG00000260651.1 antisense AF213884.3 2 OTTHUMG00000176287.1 +47392 chr4 HAVANA gene 102501329 102617302 6257.0 + 0 ENSG00000109320.11 protein_coding NFKB1 1 OTTHUMG00000161080.7 +47393 chr4 HAVANA gene 102662611 102663073 463.0 + 0 ENSG00000241981.2 processed_pseudogene AF213884.1 1 OTTHUMG00000157533.2 pseudo_consens +47394 chr4 HAVANA gene 102728746 102730171 1426.0 - 0 ENSG00000248971.2 processed_pseudogene KRT8P46 1 OTTHUMG00000161079.2 pseudo_consens,overlapping_locus +47395 chr4 HAVANA gene 102727274 102730721 1355.0 - 0 ENSG00000230069.3 processed_pseudogene LRRC37A15P 1 OTTHUMG00000161081.1 pseudo_consens,overlapping_locus +47396 chr4 HAVANA gene 102734358 102734612 255.0 + 0 ENSG00000224207.3 processed_pseudogene AC018797.1 2 OTTHUMG00000161012.1 +47397 chr4 HAVANA gene 102751401 102752641 1241.0 + 0 ENSG00000251288.2 processed_pseudogene AC018797.3 1 OTTHUMG00000161017.2 pseudo_consens +47398 chr4 HAVANA gene 102630770 102760994 11743.0 - 0 ENSG00000109323.9 protein_coding MANBA 2 OTTHUMG00000131123.13 overlapping_locus +47399 chr4 ENSEMBL gene 102837047 102837099 53.0 - 0 ENSG00000252739.1 snRNA RNU7-151P 3 +47400 chr4 HAVANA gene 102828055 102844075 883.0 + 0 ENSG00000246560.2 antisense AC018797.2 2 OTTHUMG00000161016.1 +47401 chr4 HAVANA gene 102794383 102868896 10069.0 - 0 ENSG00000109332.19 protein_coding UBE2D3 2 OTTHUMG00000131119.16 ncRNA_host +47402 chr4 HAVANA gene 102868974 102892807 6352.0 + 0 ENSG00000145354.11 protein_coding CISD2 1 OTTHUMG00000161014.5 +47403 chr4 HAVANA gene 102896725 102898237 1513.0 + 0 ENSG00000250651.1 processed_pseudogene PABPC1P7 1 OTTHUMG00000161018.1 pseudo_consens +47404 chr4 HAVANA gene 102961956 102963327 1244.0 + 0 ENSG00000249283.3 processed_pseudogene ACTR3BP4 1 OTTHUMG00000161015.1 pseudo_consens +47405 chr4 HAVANA gene 102885048 103019739 2977.0 - 0 ENSG00000164037.16 protein_coding SLC9B1 2 OTTHUMG00000161114.3 +47406 chr4 HAVANA gene 103019868 103085829 5374.0 - 0 ENSG00000164038.14 protein_coding SLC9B2 1 OTTHUMG00000131125.5 overlapping_locus +47407 chr4 HAVANA gene 103079435 103099883 3383.0 - 0 ENSG00000164039.14 protein_coding BDH2 2 OTTHUMG00000074039.5 overlapping_locus +47408 chr4 HAVANA gene 103105806 103198409 9444.0 - 0 ENSG00000138778.11 protein_coding CENPE 2 OTTHUMG00000160980.5 +47409 chr4 HAVANA gene 103256159 103453658 923.0 + 0 ENSG00000248740.5 lincRNA LINC02428 2 OTTHUMG00000160989.1 +47410 chr4 HAVANA gene 103550927 103559127 830.0 - 0 ENSG00000250920.1 lincRNA AC105460.1 2 OTTHUMG00000160990.2 +47411 chr4 HAVANA gene 103572089 103574082 1994.0 + 0 ENSG00000251571.1 processed_pseudogene DDX3P3 1 OTTHUMG00000160979.2 pseudo_consens,overlapping_locus +47412 chr4 HAVANA gene 103548745 103624534 927.0 + 0 ENSG00000251577.5 antisense AC105460.2 2 OTTHUMG00000160991.2 overlapping_locus +47413 chr4 HAVANA gene 103586031 103719816 5190.0 - 0 ENSG00000169836.4 protein_coding TACR3 2 OTTHUMG00000131124.1 +47414 chr4 ENSEMBL gene 103924540 103924641 102.0 + 0 ENSG00000252460.1 snRNA RNU6-635P 3 +47415 chr4 HAVANA gene 103961616 104036923 812.0 + 0 ENSG00000249614.1 lincRNA LINC02503 2 OTTHUMG00000161751.1 +47416 chr4 HAVANA gene 104230380 104411035 995.0 + 0 ENSG00000251170.5 lincRNA AC004052.1 1 OTTHUMG00000160975.1 +47417 chr4 HAVANA gene 104468312 104494901 5819.0 - 0 ENSG00000168772.10 protein_coding CXXC4 2 OTTHUMG00000131121.3 +47418 chr4 HAVANA gene 104556960 104568877 547.0 + 0 ENSG00000250670.1 lincRNA AC004063.1 2 OTTHUMG00000160976.2 overlapping_locus +47419 chr4 HAVANA gene 104490965 104697592 2968.0 + 0 ENSG00000245384.1 antisense CXXC4-AS1 2 OTTHUMG00000160977.1 overlapping_locus +47420 chr4 HAVANA gene 104886118 104886955 838.0 - 0 ENSG00000244470.2 processed_pseudogene AC105918.1 1 OTTHUMG00000157534.2 pseudo_consens,overlapping_locus +47421 chr4 HAVANA gene 104653874 104966793 575.0 - 0 ENSG00000248242.1 lincRNA AC004053.1 2 OTTHUMG00000161052.1 overlapping_locus +47422 chr4 ENSEMBL gene 104974672 104974771 100.0 + 0 ENSG00000251906.2 snRNA RNU6-351P 3 +47423 chr4 HAVANA gene 104996900 104997052 153.0 - 0 ENSG00000276992.1 processed_pseudogene AC096577.2 2 OTTHUMG00000187580.1 +47424 chr4 HAVANA gene 105102891 105104004 1114.0 - 0 ENSG00000251473.2 processed_pseudogene AC004069.2 1 OTTHUMG00000160995.2 pseudo_consens +47425 chr4 ENSEMBL gene 105105987 105106094 108.0 + 0 ENSG00000252136.1 snoRNA RF00322 3 +47426 chr4 HAVANA gene 104907357 105120000 1038.0 + 0 ENSG00000248373.5 lincRNA AC096577.1 2 OTTHUMG00000161051.1 ncRNA_host +47427 chr4 HAVANA gene 105137280 105140619 549.0 - 0 ENSG00000251259.1 lincRNA AC004069.1 2 OTTHUMG00000160994.4 +47428 chr4 HAVANA gene 105171354 105178063 537.0 - 0 ENSG00000251586.1 antisense TET2-AS1 2 OTTHUMG00000160996.1 +47429 chr4 HAVANA gene 105145875 105279816 16474.0 + 0 ENSG00000168769.13 protein_coding TET2 2 OTTHUMG00000131213.3 +47430 chr4 ENSEMBL gene 105293664 105293946 283.0 + 0 ENSG00000243383.3 misc_RNA RN7SL89P 3 +47431 chr4 ENSEMBL gene 105406997 105407092 96.0 + 0 ENSG00000200917.1 snRNA RNU6-553P 3 +47432 chr4 HAVANA gene 105369077 105474081 4654.0 - 0 ENSG00000138777.19 protein_coding PPA2 1 OTTHUMG00000128781.11 +47433 chr4 HAVANA gene 105484698 105486080 1383.0 + 0 ENSG00000249264.1 processed_pseudogene EEF1A1P9 1 OTTHUMG00000161040.1 pseudo_consens +47434 chr4 HAVANA gene 105526596 105527397 802.0 - 0 ENSG00000216425.4 processed_pseudogene AC004066.1 1 OTTHUMG00000161045.1 pseudo_consens +47435 chr4 HAVANA gene 105532475 105532630 156.0 + 0 ENSG00000250922.1 processed_pseudogene ATP5F1EP1 1 OTTHUMG00000161055.1 pseudo_consens +47436 chr4 HAVANA gene 105540190 105552355 572.0 - 0 ENSG00000250522.1 antisense AC004066.2 2 OTTHUMG00000161046.1 +47437 chr4 HAVANA gene 105561591 105570238 456.0 + 0 ENSG00000249885.1 sense_intronic ARHGEF38-IT1 2 OTTHUMG00000161056.1 overlapping_locus +47438 chr4 HAVANA gene 105679050 105680094 1045.0 - 0 ENSG00000248778.1 processed_pseudogene AC105391.1 2 OTTHUMG00000161078.1 +47439 chr4 HAVANA gene 105552620 105708093 7579.0 + 0 ENSG00000236699.8 protein_coding ARHGEF38 1 OTTHUMG00000154752.5 overlapping_locus +47440 chr4 HAVANA gene 105746245 105827172 826.0 - 0 ENSG00000251175.5 antisense AC008243.1 2 OTTHUMG00000161179.1 overlapping_locus +47441 chr4 HAVANA gene 105708778 105847728 6295.0 + 0 ENSG00000138780.14 protein_coding GSTCD 2 OTTHUMG00000131211.7 +47442 chr4 HAVANA gene 105682627 105895986 3897.0 - 0 ENSG00000138785.14 protein_coding INTS12 2 OTTHUMG00000131215.8 overlapping_locus +47443 chr4 HAVANA gene 105927060 105932722 584.0 - 0 ENSG00000250740.1 antisense AC109361.2 2 OTTHUMG00000161212.1 +47444 chr4 HAVANA gene 105894775 106004027 6117.0 + 0 ENSG00000168743.12 protein_coding NPNT 1 OTTHUMG00000161189.3 +47445 chr4 HAVANA gene 106003317 106022478 3526.0 - 0 ENSG00000249635.1 antisense AC109361.1 2 OTTHUMG00000161211.1 +47446 chr4 HAVANA gene 106041599 106321495 11112.0 - 0 ENSG00000145348.16 protein_coding TBCK 2 OTTHUMG00000131214.7 +47447 chr4 HAVANA gene 106315544 106349226 3328.0 + 0 ENSG00000164022.16 protein_coding AIMP1 2 OTTHUMG00000131217.5 +47448 chr4 HAVANA gene 106357485 106368825 1470.0 - 0 ENSG00000250298.4 protein_coding GIMD1 2 OTTHUMG00000161071.5 +47449 chr4 HAVANA gene 106433624 106453448 521.0 + 0 ENSG00000249613.1 lincRNA LINC02173 2 OTTHUMG00000160992.1 +47450 chr4 HAVANA gene 106836498 106837601 1104.0 - 0 ENSG00000248915.2 processed_pseudogene ACTR6P1 1 OTTHUMG00000160993.2 pseudo_consens +47451 chr4 HAVANA gene 107203349 107203924 576.0 - 0 ENSG00000213522.4 processed_pseudogene RAC1P5 1 OTTHUMG00000161008.2 pseudo_consens,overlapping_locus +47452 chr4 HAVANA gene 106921802 107283806 4319.0 - 0 ENSG00000155011.8 protein_coding DKK2 2 OTTHUMG00000131216.6 overlapping_locus +47453 chr4 HAVANA gene 107258700 107301870 557.0 + 0 ENSG00000251081.1 lincRNA AC104663.1 2 OTTHUMG00000161304.1 +47454 chr4 ENSEMBL gene 107435118 107435220 103.0 + 0 ENSG00000252470.1 snRNA RNU6-551P 3 +47455 chr4 HAVANA gene 107590276 107720452 3478.0 - 0 ENSG00000138801.8 protein_coding PAPSS1 2 OTTHUMG00000131210.3 +47456 chr4 ENSEMBL gene 107867807 107867910 104.0 - 0 ENSG00000222691.1 snRNA RNU6-733P 3 +47457 chr4 HAVANA gene 107824563 107915047 7635.0 + 0 ENSG00000164023.14 protein_coding SGMS2 2 OTTHUMG00000131811.5 +47458 chr4 HAVANA gene 107936031 107941255 3147.0 - 0 ENSG00000249604.1 antisense AC096564.2 2 OTTHUMG00000161086.1 overlapping_locus +47459 chr4 HAVANA gene 107931369 107953457 6096.0 + 0 ENSG00000155016.17 protein_coding CYP2U1 1 OTTHUMG00000161084.2 +47460 chr4 HAVANA gene 107863479 107978799 3099.0 - 0 ENSG00000245293.2 antisense AC096564.1 2 OTTHUMG00000161085.2 ncRNA_host,overlapping_locus +47461 chr4 HAVANA gene 107989714 108035175 12086.0 + 0 ENSG00000138796.16 protein_coding HADH 2 OTTHUMG00000131810.7 +47462 chr4 HAVANA gene 108047545 108168956 5361.0 - 0 ENSG00000138795.9 protein_coding LEF1 2 OTTHUMG00000131809.6 +47463 chr4 HAVANA gene 108167525 108256836 4799.0 + 0 ENSG00000232021.6 processed_transcript LEF1-AS1 2 OTTHUMG00000161028.1 +47464 chr4 HAVANA gene 108407843 108408578 736.0 - 0 ENSG00000239939.1 processed_pseudogene RPSAP34 1 OTTHUMG00000157535.1 pseudo_consens +47465 chr4 HAVANA gene 108415220 108416639 710.0 + 0 ENSG00000278589.1 unprocessed_pseudogene ZACNP1 2 OTTHUMG00000187581.1 +47466 chr4 HAVANA gene 108417705 108419763 2059.0 - 0 ENSG00000250485.1 processed_pseudogene EXOC7P1 1 OTTHUMG00000161029.1 pseudo_consens +47467 chr4 HAVANA gene 108538190 108620460 4570.0 - 0 ENSG00000234492.4 lincRNA RPL34-AS1 2 OTTHUMG00000161030.2 +47468 chr4 HAVANA gene 108620566 108630412 3393.0 + 0 ENSG00000109475.16 protein_coding RPL34 2 OTTHUMG00000131839.3 +47469 chr4 ENSEMBL gene 108652150 108652256 107.0 + 0 ENSG00000206601.1 snRNA RNU6-431P 3 +47470 chr4 HAVANA gene 108650584 108667820 1617.0 + 0 ENSG00000198856.12 protein_coding OSTC 2 OTTHUMG00000161031.2 ncRNA_host +47471 chr4 HAVANA gene 108742040 108763054 2950.0 - 0 ENSG00000164089.8 protein_coding ETNPPL 1 OTTHUMG00000161036.2 +47472 chr4 HAVANA gene 108773613 108774020 408.0 + 0 ENSG00000249257.1 processed_pseudogene AC097473.1 1 OTTHUMG00000161037.1 pseudo_consens +47473 chr4 HAVANA gene 108788745 108789779 1035.0 - 0 ENSG00000250185.2 processed_pseudogene RCC2P8 1 OTTHUMG00000161039.2 pseudo_consens +47474 chr4 HAVANA gene 108808725 109302752 8744.0 - 0 ENSG00000188517.15 protein_coding COL25A1 2 OTTHUMG00000150039.6 +47475 chr4 HAVANA gene 109303035 109316135 1951.0 + 0 ENSG00000246774.1 lincRNA ZCCHC23 2 OTTHUMG00000161047.1 +47476 chr4 HAVANA gene 109346326 109347459 1134.0 - 0 ENSG00000249465.1 processed_pseudogene RBMXP4 1 OTTHUMG00000161038.1 pseudo_consens +47477 chr4 HAVANA gene 109347475 109433817 2584.0 - 0 ENSG00000247950.6 antisense SEC24B-AS1 2 OTTHUMG00000161048.2 +47478 chr4 ENSEMBL gene 109450772 109451068 297.0 - 0 ENSG00000243227.3 misc_RNA RN7SL55P 3 +47479 chr4 ENSEMBL gene 109488698 109488795 98.0 + 0 ENSG00000207988.1 miRNA MIR576 3 +47480 chr4 HAVANA gene 109433772 109540896 5219.0 + 0 ENSG00000138802.11 protein_coding SEC24B 1 OTTHUMG00000161372.3 ncRNA_host +47481 chr4 HAVANA gene 109553243 109554094 852.0 - 0 ENSG00000225094.3 processed_pseudogene SETP20 1 OTTHUMG00000161100.2 pseudo_consens +47482 chr4 HAVANA gene 109555170 109555732 563.0 + 0 ENSG00000249965.2 processed_pseudogene CDC42P4 1 OTTHUMG00000161101.2 pseudo_consens +47483 chr4 HAVANA gene 109673843 109674124 282.0 + 0 ENSG00000248785.1 processed_pseudogene HIGD1AP14 1 OTTHUMG00000161106.1 pseudo_consens,overlapping_locus +47484 chr4 HAVANA gene 109560205 109688726 3566.0 + 0 ENSG00000005059.15 protein_coding MCUB 2 OTTHUMG00000161103.2 overlapping_locus +47485 chr4 HAVANA gene 109692004 109692703 700.0 + 0 ENSG00000273447.1 antisense AC004067.1 2 OTTHUMG00000186339.1 +47486 chr4 HAVANA gene 109688622 109703583 1943.0 - 0 ENSG00000138794.9 protein_coding CASP6 1 OTTHUMG00000131914.4 +47487 chr4 HAVANA gene 109709989 109730077 5228.0 - 0 ENSG00000123739.10 protein_coding PLA2G12A 2 OTTHUMG00000131915.3 overlapping_locus +47488 chr4 HAVANA gene 109713916 109801999 2385.0 - 0 ENSG00000285330.1 protein_coding AC126283.2 2 OTTHUMG00000192517.1 overlapping_locus +47489 chr4 HAVANA gene 109740694 109802179 3875.0 - 0 ENSG00000205403.13 protein_coding CFI 2 OTTHUMG00000161109.6 overlapping_locus +47490 chr4 HAVANA gene 109815047 109815410 364.0 - 0 ENSG00000272795.1 lincRNA AC126283.1 2 OTTHUMG00000186340.1 +47491 chr4 HAVANA gene 109815510 109824740 2046.0 + 0 ENSG00000109534.16 protein_coding GAR1 2 OTTHUMG00000161108.5 +47492 chr4 HAVANA gene 109827994 109844604 1455.0 + 0 ENSG00000180245.4 protein_coding RRH 2 OTTHUMG00000132045.1 +47493 chr4 HAVANA gene 109848202 109872315 3897.0 + 0 ENSG00000183423.11 protein_coding LRIT3 2 OTTHUMG00000132043.3 +47494 chr4 HAVANA gene 109879070 109879897 828.0 - 0 ENSG00000249681.2 processed_pseudogene KRT19P3 1 OTTHUMG00000161105.2 pseudo_consens +47495 chr4 ENSEMBL gene 109992325 109992431 107.0 + 0 ENSG00000207260.1 snRNA RNU6-35P 3 +47496 chr4 HAVANA gene 109912884 110012266 6127.0 + 0 ENSG00000138798.11 protein_coding EGF 1 OTTHUMG00000132044.6 ncRNA_host +47497 chr4 ENSEMBL gene 110117736 110118070 335.0 + 0 ENSG00000263940.2 misc_RNA RN7SL275P 3 +47498 chr4 HAVANA gene 110146374 110147248 571.0 + 0 ENSG00000248200.2 processed_pseudogene AC093770.1 1 OTTHUMG00000161102.2 pseudo_consens +47499 chr4 HAVANA gene 110045846 110199199 7297.0 - 0 ENSG00000170522.9 protein_coding ELOVL6 2 OTTHUMG00000132547.6 +47500 chr4 HAVANA gene 110251871 110252099 229.0 - 0 ENSG00000166530.8 processed_pseudogene HSBP1P2 1 OTTHUMG00000161107.2 pseudo_consens +47501 chr4 HAVANA gene 110264865 110265017 153.0 - 0 ENSG00000250594.2 processed_pseudogene AC108145.1 1 OTTHUMG00000161104.2 pseudo_consens +47502 chr4 ENSEMBL gene 110278185 110278291 107.0 + 0 ENSG00000212160.1 snRNA RNU6-205P 3 +47503 chr4 HAVANA gene 110291644 110293573 1930.0 + 0 ENSG00000250304.2 processed_pseudogene ZBED1P1 1 OTTHUMG00000161111.2 pseudo_consens +47504 chr4 HAVANA gene 110399773 110400511 739.0 - 0 ENSG00000251464.2 processed_pseudogene RPL7L1P13 1 OTTHUMG00000161110.2 pseudo_consens +47505 chr4 HAVANA gene 110415898 110418504 2341.0 + 0 ENSG00000251046.2 processed_pseudogene ZNF969P 2 OTTHUMG00000161373.3 overlapping_locus +47506 chr4 ENSEMBL gene 110433109 110433188 80.0 - 0 ENSG00000199894.1 snoRNA RF00494 3 +47507 chr4 HAVANA gene 110512488 110519505 1447.0 - 0 ENSG00000250511.1 antisense AC098798.1 1 OTTHUMG00000161116.2 +47508 chr4 HAVANA gene 110365733 110565285 7802.0 + 0 ENSG00000138792.9 protein_coding ENPEP 2 OTTHUMG00000132546.3 overlapping_locus +47509 chr4 HAVANA gene 110595513 110615458 832.0 - 0 ENSG00000250103.2 lincRNA PANCR 1 OTTHUMG00000161118.2 +47510 chr4 HAVANA gene 110617423 110642123 5629.0 - 0 ENSG00000164093.16 protein_coding PITX2 2 OTTHUMG00000132837.9 +47511 chr4 HAVANA gene 110794403 110797344 556.0 + 0 ENSG00000249519.1 lincRNA LINC01438 2 OTTHUMG00000161115.1 +47512 chr4 ENSEMBL gene 110860582 110860647 66.0 - 0 ENSG00000215961.1 miRNA MIR297 3 +47513 chr4 HAVANA gene 110945109 110945799 691.0 - 0 ENSG00000251483.2 processed_pseudogene LYPLA1P2 1 OTTHUMG00000161117.2 pseudo_consens +47514 chr4 HAVANA gene 111063583 111064227 645.0 + 0 ENSG00000251312.2 processed_pseudogene AC004062.1 1 OTTHUMG00000161119.2 pseudo_consens +47515 chr4 ENSEMBL gene 111331412 111331518 107.0 + 0 ENSG00000200963.1 snRNA RNU6-289P 3 +47516 chr4 HAVANA gene 111551854 111552173 320.0 + 0 ENSG00000241722.2 processed_pseudogene AC083795.1 1 OTTHUMG00000157541.2 pseudo_consens +47517 chr4 HAVANA gene 111640495 111648808 610.0 + 0 ENSG00000248656.1 lincRNA AC083795.2 2 OTTHUMG00000161125.1 +47518 chr4 HAVANA gene 111804418 111809694 300.0 - 0 ENSG00000248432.1 lincRNA AC139718.1 2 OTTHUMG00000161755.1 +47519 chr4 HAVANA gene 111802801 111839886 481.0 + 0 ENSG00000250855.1 lincRNA AC139718.2 2 OTTHUMG00000161757.1 +47520 chr4 HAVANA gene 112068010 112068526 517.0 + 0 ENSG00000250556.1 processed_pseudogene CCDC34P1 1 OTTHUMG00000161050.1 pseudo_consens +47521 chr4 HAVANA gene 111826881 112072698 583.0 - 0 ENSG00000249815.1 lincRNA AC004704.1 2 OTTHUMG00000161756.1 +47522 chr4 HAVANA gene 112077598 112078400 803.0 + 0 ENSG00000250307.2 processed_pseudogene TUBB8P3 2 OTTHUMG00000161049.3 +47523 chr4 HAVANA gene 112116510 112116903 394.0 - 0 ENSG00000240459.2 processed_pseudogene AC093663.1 1 OTTHUMG00000157543.2 pseudo_consens +47524 chr4 HAVANA gene 112171215 112171527 313.0 + 0 ENSG00000243280.2 processed_pseudogene AC093663.2 1 OTTHUMG00000157544.2 pseudo_consens,overlapping_locus +47525 chr4 HAVANA gene 112145397 112195256 8901.0 + 0 ENSG00000174749.5 protein_coding FAM241A 2 OTTHUMG00000132851.2 overlapping_locus +47526 chr4 HAVANA gene 112229561 112231596 2036.0 - 0 ENSG00000260526.1 antisense AC109347.1 2 OTTHUMG00000176315.1 +47527 chr4 HAVANA gene 112231737 112270047 3444.0 + 0 ENSG00000138660.11 protein_coding AP1AR 2 OTTHUMG00000132849.2 +47528 chr4 HAVANA gene 112272968 112273316 349.0 - 0 ENSG00000272567.1 lincRNA AC109347.2 2 OTTHUMG00000186344.1 +47529 chr4 HAVANA gene 112274542 112285903 4250.0 - 0 ENSG00000145365.10 protein_coding TIFA 2 OTTHUMG00000161066.2 +47530 chr4 HAVANA gene 112356135 112359819 3685.0 + 0 ENSG00000251441.2 processed_pseudogene RTEL1P1 1 OTTHUMG00000161065.4 pseudo_consens,overlapping_locus +47531 chr4 HAVANA gene 112285509 112442620 12325.0 + 0 ENSG00000073331.17 protein_coding ALPK1 2 OTTHUMG00000132911.3 overlapping_locus +47532 chr4 HAVANA gene 112455924 112457785 1862.0 + 0 ENSG00000248697.1 processed_pseudogene TOX4P1 1 OTTHUMG00000161064.1 pseudo_consens +47533 chr4 HAVANA gene 112513516 112516172 2287.0 - 0 ENSG00000178403.3 protein_coding NEUROG2 2 OTTHUMG00000132907.1 +47534 chr4 HAVANA gene 112530371 112530672 302.0 - 0 ENSG00000248439.2 processed_pseudogene RPL23AP94 1 OTTHUMG00000161131.2 pseudo_consens +47535 chr4 HAVANA gene 112515385 112546881 952.0 + 0 ENSG00000249509.1 antisense AC023886.1 1 OTTHUMG00000161132.1 +47536 chr4 HAVANA gene 112564988 112565398 411.0 + 0 ENSG00000250966.2 processed_pseudogene AC023886.2 1 OTTHUMG00000161133.2 pseudo_consens +47537 chr4 HAVANA gene 112539333 112636995 9103.0 - 0 ENSG00000138658.15 protein_coding ZGRF1 2 OTTHUMG00000132908.4 +47538 chr4 ENSEMBL gene 112647874 112647941 68.0 - 0 ENSG00000199169.1 miRNA MIR367 3 +47539 chr4 ENSEMBL gene 112648004 112648071 68.0 - 0 ENSG00000199145.1 miRNA MIR302D 3 +47540 chr4 ENSEMBL gene 112648183 112648251 69.0 - 0 ENSG00000207927.1 miRNA MIR302A 3 +47541 chr4 ENSEMBL gene 112648363 112648430 68.0 - 0 ENSG00000199102.1 miRNA MIR302C 3 +47542 chr4 ENSEMBL gene 112648485 112648557 73.0 - 0 ENSG00000284463.1 miRNA MIR302B 3 +47543 chr4 HAVANA gene 112646476 112650051 743.0 - 0 ENSG00000249532.5 antisense AC106864.1 2 OTTHUMG00000161565.1 ncRNA_host +47544 chr4 HAVANA gene 112636964 112657592 4083.0 + 0 ENSG00000174720.15 protein_coding LARP7 1 OTTHUMG00000132909.6 +47545 chr4 HAVANA gene 112685055 112685503 449.0 + 0 ENSG00000220924.4 processed_pseudogene OSTCP4 1 OTTHUMG00000161564.1 pseudo_consens +47546 chr4 HAVANA gene 112693459 112693792 334.0 - 0 ENSG00000248633.1 transcribed_processed_pseudogene WRBP1 1 OTTHUMG00000161560.1 pseudo_consens,overlapping_locus +47547 chr4 HAVANA gene 112693047 112706810 740.0 - 0 ENSG00000250046.3 lincRNA AC106864.2 1 OTTHUMG00000161567.1 overlapping_locus +47548 chr4 HAVANA gene 112738672 112739106 435.0 + 0 ENSG00000241002.1 processed_pseudogene AC017007.3 1 OTTHUMG00000157545.1 pseudo_consens +47549 chr4 ENSEMBL gene 112755816 112755917 102.0 - 0 ENSG00000202536.2 misc_RNA RF00019 3 +47550 chr4 HAVANA gene 112788083 112788878 796.0 - 0 ENSG00000241741.1 processed_pseudogene RPL7AP30 1 OTTHUMG00000157546.1 pseudo_consens +47551 chr4 HAVANA gene 112797050 112798691 1352.0 - 0 ENSG00000250500.1 processed_pseudogene AC017007.4 1 OTTHUMG00000161568.1 pseudo_consens +47552 chr4 HAVANA gene 112826307 112827607 1301.0 + 0 ENSG00000234841.4 processed_pseudogene AC017007.2 1 OTTHUMG00000161569.2 pseudo_consens,overlapping_locus +47553 chr4 HAVANA gene 112881718 112882132 415.0 - 0 ENSG00000228814.4 transcribed_processed_pseudogene AC017007.1 1 OTTHUMG00000161566.2 pseudo_consens,overlapping_locus +47554 chr4 HAVANA gene 112880298 112882330 874.0 - 0 ENSG00000251126.2 antisense AC017007.5 1 OTTHUMG00000161563.2 overlapping_locus +47555 chr4 HAVANA gene 113031287 113034551 427.0 - 0 ENSG00000249373.2 antisense AC093879.2 1 OTTHUMG00000161561.2 overlapping_locus +47556 chr4 HAVANA gene 112979590 113071962 1176.0 - 0 ENSG00000248152.1 antisense AC093879.1 2 OTTHUMG00000161562.1 overlapping_locus +47557 chr4 ENSEMBL gene 113106863 113106955 93.0 + 0 ENSG00000283193.1 miRNA MIR1243 3 +47558 chr4 ENSEMBL gene 113152282 113152362 81.0 + 0 ENSG00000275810.1 miRNA MIR8082 3 +47559 chr4 HAVANA gene 113214046 113217170 498.0 - 0 ENSG00000196656.7 transcribed_processed_pseudogene AC004057.1 1 OTTHUMG00000157547.2 +47560 chr4 HAVANA gene 112818109 113383740 18224.0 + 0 ENSG00000145362.17 protein_coding ANK2 1 OTTHUMG00000132912.6 ncRNA_host,overlapping_locus +47561 chr4 ENSEMBL gene 113419840 113420136 297.0 + 0 ENSG00000239279.3 misc_RNA RN7SL184P 3 +47562 chr4 ENSEMBL gene 113420323 113420486 164.0 + 0 ENSG00000206820.1 snRNA RNU1-138P 3 +47563 chr4 HAVANA gene 113451032 113761927 7363.0 - 0 ENSG00000145349.16 protein_coding CAMK2D 1 OTTHUMG00000132910.4 +47564 chr4 HAVANA gene 113840050 113840236 155.0 + 0 ENSG00000250229.1 processed_pseudogene AC111193.1 1 OTTHUMG00000161096.1 pseudo_consens +47565 chr4 HAVANA gene 113943256 113944320 441.0 + 0 ENSG00000249304.1 antisense AC104779.1 2 OTTHUMG00000161068.1 +47566 chr4 HAVANA gene 113900284 113979727 5146.0 - 0 ENSG00000180801.13 protein_coding ARSJ 2 OTTHUMG00000161067.3 retrogene +47567 chr4 HAVANA gene 114103938 114104225 280.0 + 0 ENSG00000248716.2 processed_pseudogene AC093815.1 2 OTTHUMG00000161082.2 +47568 chr4 ENSEMBL gene 114656759 114656854 96.0 + 0 ENSG00000207931.1 miRNA MIR577 3 +47569 chr4 HAVANA gene 114598455 114678224 4699.0 + 0 ENSG00000174607.10 protein_coding UGT8 2 OTTHUMG00000132915.4 ncRNA_host +47570 chr4 HAVANA gene 114713579 114714920 1342.0 - 0 ENSG00000250215.1 processed_pseudogene CIR1P2 1 OTTHUMG00000161092.1 pseudo_consens +47571 chr4 ENSEMBL gene 114799331 114799629 299.0 + 0 ENSG00000240637.3 misc_RNA RN7SL808P 3 +47572 chr4 HAVANA gene 114827763 115113876 3719.0 - 0 ENSG00000138653.9 protein_coding NDST4 2 OTTHUMG00000132916.2 +47573 chr4 HAVANA gene 115142982 115143303 322.0 + 0 ENSG00000251308.1 processed_pseudogene MRPS33P3 1 OTTHUMG00000161076.1 pseudo_consens +47574 chr4 HAVANA gene 115628812 115629707 896.0 + 0 ENSG00000250693.2 processed_pseudogene RPF2P2 1 OTTHUMG00000161072.2 pseudo_consens +47575 chr4 HAVANA gene 115764099 115764819 721.0 - 0 ENSG00000248488.2 processed_pseudogene PGAM4P2 1 OTTHUMG00000160123.2 pseudo_consens +47576 chr4 HAVANA gene 115920707 115921978 1272.0 + 0 ENSG00000250363.1 processed_pseudogene KRT18P21 1 OTTHUMG00000161073.1 pseudo_consens +47577 chr4 HAVANA gene 116043407 116044045 639.0 - 0 ENSG00000250442.1 processed_pseudogene EIF3KP3 1 OTTHUMG00000161077.1 pseudo_consens,overlapping_locus +47578 chr4 HAVANA gene 116193997 116194751 755.0 - 0 ENSG00000250627.2 processed_pseudogene TTC39CP1 1 OTTHUMG00000161074.2 pseudo_consens,overlapping_locus +47579 chr4 HAVANA gene 115922015 116297160 840.0 - 0 ENSG00000249259.3 transcribed_processed_pseudogene AC027613.1 2 OTTHUMG00000161137.1 overlapping_locus +47580 chr4 ENSEMBL gene 116299725 116299768 44.0 + 0 ENSG00000284253.1 miRNA MIR1973 3 +47581 chr4 HAVANA gene 116298876 116300320 1445.0 + 0 ENSG00000270394.4 protein_coding MTRNR2L13 2 OTTHUMG00000184994.3 ncRNA_host +47582 chr4 HAVANA gene 116378919 116379269 351.0 + 0 ENSG00000250272.1 processed_pseudogene TRMT112P1 1 OTTHUMG00000161139.1 pseudo_consens +47583 chr4 HAVANA gene 116425983 116430892 1863.0 - 0 ENSG00000248139.2 processed_pseudogene CUL4AP1 1 OTTHUMG00000161138.2 pseudo_consens +47584 chr4 HAVANA gene 116489364 116515146 468.0 - 0 ENSG00000250791.1 lincRNA AC106892.1 2 OTTHUMG00000161136.1 +47585 chr4 HAVANA gene 116598161 116599611 1451.0 + 0 ENSG00000213493.3 processed_pseudogene ACTN4P1 1 OTTHUMG00000161135.1 pseudo_consens +47586 chr4 ENSEMBL gene 116839279 116839385 107.0 + 0 ENSG00000201752.1 snRNA RNU6-119P 3 +47587 chr4 HAVANA gene 116858093 116858973 881.0 + 0 ENSG00000271053.1 processed_pseudogene AC093765.1 1 OTTHUMG00000185005.1 pseudo_consens +47588 chr4 HAVANA gene 117083554 117085576 2023.0 - 0 ENSG00000174599.5 protein_coding TRAM1L1 2 OTTHUMG00000132956.1 retrogene +47589 chr4 HAVANA gene 117249924 117250188 265.0 + 0 ENSG00000223605.1 unprocessed_pseudogene AC107399.1 2 OTTHUMG00000059448.1 +47590 chr4 HAVANA gene 117314597 117360639 735.0 - 0 ENSG00000224932.1 lincRNA LINC02262 2 OTTHUMG00000059449.2 +47591 chr4 HAVANA gene 117360625 117372852 881.0 + 0 ENSG00000228358.5 lincRNA LINC02263 2 OTTHUMG00000059445.4 +47592 chr4 HAVANA gene 117413462 117414279 818.0 + 0 ENSG00000237684.1 processed_pseudogene RPSAP35 1 OTTHUMG00000059446.1 pseudo_consens +47593 chr4 HAVANA gene 117574512 117576174 1663.0 - 0 ENSG00000213492.2 transcribed_processed_pseudogene NT5C3AP1 1 OTTHUMG00000059451.2 pseudo_consens +47594 chr4 HAVANA gene 117406166 117691188 4047.0 + 0 ENSG00000236922.9 lincRNA LINC01378 2 OTTHUMG00000059450.8 +47595 chr4 HAVANA gene 117834401 117869948 576.0 + 0 ENSG00000229565.1 lincRNA LINC02264 2 OTTHUMG00000059447.1 +47596 chr4 HAVANA gene 118193405 118194751 1347.0 - 0 ENSG00000251463.2 processed_pseudogene FKBP4P1 1 OTTHUMG00000161414.2 pseudo_consens +47597 chr4 HAVANA gene 118033618 118258648 7009.0 + 0 ENSG00000164100.8 protein_coding NDST3 2 OTTHUMG00000132959.4 +47598 chr4 ENSEMBL gene 118279190 118279320 131.0 + 0 ENSG00000275994.1 snoRNA SNORA24 3 +47599 chr4 HAVANA gene 118278709 118279823 923.0 + 0 ENSG00000269893.6 lincRNA SNHG8 2 OTTHUMG00000183991.2 ncRNA_host +47600 chr4 HAVANA gene 118280038 118353003 5725.0 - 0 ENSG00000164099.3 protein_coding PRSS12 2 OTTHUMG00000161166.3 +47601 chr4 HAVANA gene 118400514 118400834 321.0 - 0 ENSG00000230671.2 processed_pseudogene NDUFS5P5 1 OTTHUMG00000161383.1 pseudo_consens +47602 chr4 HAVANA gene 118460224 118460301 78.0 - 0 ENSG00000273716.2 processed_pseudogene AC092670.1 2 OTTHUMG00000191358.1 +47603 chr4 HAVANA gene 118467590 118554100 4587.0 + 0 ENSG00000154608.14 transcribed_unprocessed_pseudogene CEP170P1 2 OTTHUMG00000132958.4 +47604 chr4 ENSEMBL gene 118606450 118606553 104.0 + 0 ENSG00000223225.1 snRNA RNU6-1054P 3 +47605 chr4 HAVANA gene 118591773 118633729 4422.0 + 0 ENSG00000260404.3 transcribed_unprocessed_pseudogene AC110079.1 2 OTTHUMG00000161164.4 +47606 chr4 HAVANA gene 118635970 118638782 2813.0 - 0 ENSG00000248213.3 processed_pseudogene CICP16 1 OTTHUMG00000161208.2 pseudo_consens +47607 chr4 HAVANA gene 118640673 118640858 186.0 + 0 ENSG00000251155.2 processed_pseudogene SEPT14P4 2 OTTHUMG00000161210.2 +47608 chr4 HAVANA gene 118664087 118685341 2276.0 - 0 ENSG00000281731.2 lincRNA AC110079.2 2 OTTHUMG00000189712.1 +47609 chr4 HAVANA gene 118685368 118715433 6862.0 + 0 ENSG00000145388.14 protein_coding METTL14 1 OTTHUMG00000161167.5 +47610 chr4 HAVANA gene 118722823 118838683 9920.0 - 0 ENSG00000150961.14 protein_coding SEC24D 1 OTTHUMG00000132957.7 +47611 chr4 HAVANA gene 119006032 119006401 370.0 + 0 ENSG00000249002.2 processed_pseudogene AC096745.1 1 OTTHUMG00000161170.2 pseudo_consens,overlapping_locus +47612 chr4 HAVANA gene 119042024 119043937 1914.0 + 0 ENSG00000280551.1 TEC AC096745.2 2 OTTHUMG00000189709.1 overlapping_locus +47613 chr4 HAVANA gene 118850688 119061247 14034.0 + 0 ENSG00000172403.10 protein_coding SYNPO2 1 OTTHUMG00000161165.4 overlapping_locus +47614 chr4 HAVANA gene 119135784 119187789 2597.0 + 0 ENSG00000172399.5 protein_coding MYOZ2 2 OTTHUMG00000132968.2 +47615 chr4 HAVANA gene 119192773 119212644 2462.0 - 0 ENSG00000178636.8 transcribed_processed_pseudogene AC092656.1 1 OTTHUMG00000161336.2 pseudo_consens +47616 chr4 HAVANA gene 119212587 119295517 11950.0 + 0 ENSG00000145390.11 protein_coding USP53 2 OTTHUMG00000161331.3 +47617 chr4 HAVANA gene 119296419 119304445 3148.0 - 0 ENSG00000164096.12 protein_coding C4orf3 2 OTTHUMG00000161333.4 +47618 chr4 HAVANA gene 119317250 119322390 2478.0 - 0 ENSG00000145384.3 protein_coding FABP2 2 OTTHUMG00000132972.1 +47619 chr4 ENSEMBL gene 119367562 119367646 85.0 + 0 ENSG00000201186.1 snRNA RNU4-33P 3 +47620 chr4 HAVANA gene 119334329 119378233 521.0 + 0 ENSG00000250412.1 unprocessed_pseudogene KLHL2P1 2 OTTHUMG00000161332.2 +47621 chr4 HAVANA gene 119391831 119395335 3505.0 - 0 ENSG00000249244.1 unprocessed_pseudogene AC110373.1 1 OTTHUMG00000161327.2 pseudo_consens +47622 chr4 HAVANA gene 119409333 119410233 901.0 + 0 ENSG00000260091.1 lincRNA AC093752.3 2 OTTHUMG00000176082.1 +47623 chr4 ENSEMBL gene 119434005 119434108 104.0 - 0 ENSG00000223208.1 snRNA RNU6-1217P 3 +47624 chr4 HAVANA gene 119407967 119454638 5530.0 - 0 ENSG00000283050.1 transcribed_unprocessed_pseudogene GTF2IP12 2 OTTHUMG00000161335.2 +47625 chr4 HAVANA gene 119456350 119457277 573.0 + 0 ENSG00000250950.1 lincRNA AC093752.2 2 OTTHUMG00000161575.1 overlapping_locus +47626 chr4 HAVANA gene 119454791 119552025 5577.0 + 0 ENSG00000245958.6 transcribed_unprocessed_pseudogene AC093752.1 2 OTTHUMG00000160571.3 overlapping_locus +47627 chr4 ENSEMBL gene 119569699 119569825 127.0 + 0 ENSG00000221245.1 snoRNA RF00614 3 +47628 chr4 HAVANA gene 119494395 119628991 9775.0 - 0 ENSG00000138735.15 protein_coding PDE5A 2 OTTHUMG00000132971.6 +47629 chr4 HAVANA gene 119799089 119804515 702.0 - 0 ENSG00000250772.5 lincRNA LINC01365 2 OTTHUMG00000161337.2 +47630 chr4 ENSEMBL gene 119947131 119947232 102.0 + 0 ENSG00000200553.1 misc_RNA RF00019 3 +47631 chr4 HAVANA gene 119937557 119963898 819.0 + 0 ENSG00000250183.2 transcribed_unprocessed_pseudogene AC097173.1 2 OTTHUMG00000161328.2 overlapping_locus +47632 chr4 HAVANA gene 119939540 119964293 642.0 + 0 ENSG00000250392.2 lincRNA LINC02502 2 OTTHUMG00000161334.2 ncRNA_host,overlapping_locus +47633 chr4 HAVANA gene 120035033 120040615 474.0 - 0 ENSG00000253825.1 lincRNA AC097173.2 1 OTTHUMG00000164939.1 +47634 chr4 HAVANA gene 120055608 120067074 5748.0 - 0 ENSG00000164109.13 protein_coding MAD2L1 2 OTTHUMG00000132967.3 +47635 chr4 HAVANA gene 120091046 120092282 1237.0 - 0 ENSG00000250219.2 processed_pseudogene LTV1P1 2 OTTHUMG00000161330.2 +47636 chr4 HAVANA gene 120342056 120342647 592.0 + 0 ENSG00000225665.4 processed_pseudogene SAR1AP3 1 OTTHUMG00000161123.1 pseudo_consens,overlapping_locus +47637 chr4 HAVANA gene 120066958 120416766 3500.0 + 0 ENSG00000250938.5 antisense AC108866.1 2 OTTHUMG00000161124.2 overlapping_locus +47638 chr4 HAVANA gene 120639090 120650796 552.0 + 0 ENSG00000249409.1 lincRNA AC025741.1 1 OTTHUMG00000161141.1 +47639 chr4 ENSEMBL gene 120810469 120810569 101.0 + 0 ENSG00000212359.1 snRNA RNU6-550P 3 +47640 chr4 HAVANA gene 120895494 120897083 805.0 - 0 ENSG00000251609.2 processed_pseudogene SETP12 1 OTTHUMG00000161142.2 pseudo_consens,overlapping_locus +47641 chr4 HAVANA gene 120684919 120922870 9517.0 - 0 ENSG00000138738.10 protein_coding PRDM5 2 OTTHUMG00000132970.2 overlapping_locus +47642 chr4 ENSEMBL gene 121061172 121061478 307.0 - 0 ENSG00000223006.1 misc_RNA RN7SKP137 3 +47643 chr4 HAVANA gene 121035613 121073021 3556.0 - 0 ENSG00000173376.13 protein_coding NDNF 2 OTTHUMG00000132973.4 ncRNA_host +47644 chr4 HAVANA gene 121071429 121080476 621.0 + 0 ENSG00000250344.1 lincRNA AC105254.1 1 OTTHUMG00000161161.1 +47645 chr4 HAVANA gene 121118299 121118734 436.0 + 0 ENSG00000271302.1 processed_pseudogene AC105254.2 1 OTTHUMG00000185041.1 pseudo_consens +47646 chr4 ENSEMBL gene 121192797 121192903 107.0 - 0 ENSG00000252183.1 snRNA RNU6-948P 3 +47647 chr4 HAVANA gene 121131408 121227466 3768.0 - 0 ENSG00000050730.15 protein_coding TNIP3 2 OTTHUMG00000132969.5 ncRNA_host +47648 chr4 ENSEMBL gene 121329069 121329170 102.0 - 0 ENSG00000207148.1 misc_RNA RF00019 3 +47649 chr4 HAVANA gene 121369433 121370345 913.0 - 0 ENSG00000213480.3 processed_pseudogene AC093816.1 1 OTTHUMG00000161160.1 pseudo_consens,overlapping_locus +47650 chr4 HAVANA gene 121329312 121381059 2160.0 - 0 ENSG00000186867.10 protein_coding QRFPR 1 OTTHUMG00000133036.3 overlapping_locus +47651 chr4 HAVANA gene 121451541 121451967 427.0 + 0 ENSG00000224062.4 processed_pseudogene TUBB4BP5 2 OTTHUMG00000161159.2 +47652 chr4 HAVANA gene 121667955 121697113 3034.0 - 0 ENSG00000164111.14 protein_coding ANXA5 2 OTTHUMG00000133034.4 +47653 chr4 HAVANA gene 121758930 121765427 3027.0 - 0 ENSG00000164112.13 protein_coding TMEM155 2 OTTHUMG00000192433.1 +47654 chr4 HAVANA gene 121764585 121766814 2230.0 + 0 ENSG00000226757.2 antisense PP12613 2 OTTHUMG00000187204.1 +47655 chr4 HAVANA gene 121801317 121817021 4711.0 + 0 ENSG00000123737.12 protein_coding EXOSC9 1 OTTHUMG00000128783.7 +47656 chr4 HAVANA gene 121816444 121823933 2798.0 - 0 ENSG00000145386.9 protein_coding CCNA2 2 OTTHUMG00000133072.3 +47657 chr4 HAVANA gene 121824440 121870497 4829.0 - 0 ENSG00000138686.9 protein_coding BBS7 2 OTTHUMG00000133076.2 +47658 chr4 HAVANA gene 121870583 121872848 2266.0 + 0 ENSG00000261501.1 lincRNA AC079341.1 2 OTTHUMG00000176031.1 +47659 chr4 HAVANA gene 121879027 121951754 4358.0 - 0 ENSG00000138741.10 protein_coding TRPC3 1 OTTHUMG00000133069.4 +47660 chr4 HAVANA gene 122077840 122078318 479.0 - 0 ENSG00000237868.1 processed_pseudogene AC097533.1 1 OTTHUMG00000150117.1 pseudo_consens +47661 chr4 ENSEMBL gene 122087508 122087811 304.0 - 0 ENSG00000241037.3 misc_RNA RN7SL335P 3 +47662 chr4 HAVANA gene 122152333 122362758 20470.0 + 0 ENSG00000138688.15 protein_coding KIAA1109 1 OTTHUMG00000150116.4 +47663 chr4 HAVANA gene 122378966 122429802 2699.0 + 0 ENSG00000164113.10 protein_coding ADAD1 1 OTTHUMG00000150128.3 +47664 chr4 HAVANA gene 122451470 122456725 1119.0 - 0 ENSG00000109471.4 protein_coding IL2 2 OTTHUMG00000133075.2 +47665 chr4 HAVANA gene 122610108 122621069 3295.0 - 0 ENSG00000138684.8 protein_coding IL21 2 OTTHUMG00000133073.6 +47666 chr4 HAVANA gene 122618983 122689156 3748.0 + 0 ENSG00000227145.1 antisense IL21-AS1 2 OTTHUMG00000150127.1 +47667 chr4 HAVANA gene 122728532 122732482 3858.0 - 0 ENSG00000224786.2 transcribed_unitary_pseudogene CETN4P 2 OTTHUMG00000150126.2 +47668 chr4 HAVANA gene 122732702 122744943 3432.0 + 0 ENSG00000181004.9 protein_coding BBS12 2 OTTHUMG00000133070.3 +47669 chr4 HAVANA gene 122815771 122816117 347.0 - 0 ENSG00000244083.1 processed_pseudogene AC021205.2 1 OTTHUMG00000157548.1 pseudo_consens +47670 chr4 HAVANA gene 122840343 122840690 348.0 + 0 ENSG00000240775.1 processed_pseudogene AC021205.1 1 OTTHUMG00000157549.1 pseudo_consens,overlapping_locus +47671 chr4 HAVANA gene 122881878 122884712 1709.0 - 0 ENSG00000273007.1 antisense AC021205.3 2 OTTHUMG00000186036.1 +47672 chr4 HAVANA gene 122826708 122898236 6775.0 + 0 ENSG00000138685.15 protein_coding FGF2 2 OTTHUMG00000039506.5 overlapping_locus +47673 chr4 HAVANA gene 122888697 122922968 6591.0 - 0 ENSG00000170917.13 protein_coding NUDT6 2 OTTHUMG00000039507.6 +47674 chr4 HAVANA gene 123259949 123260118 170.0 - 0 ENSG00000250322.2 processed_pseudogene AC026402.1 1 OTTHUMG00000161158.2 pseudo_consens +47675 chr4 HAVANA gene 122923074 123319450 8247.0 + 0 ENSG00000145375.7 protein_coding SPATA5 1 OTTHUMG00000133074.4 +47676 chr4 HAVANA gene 123396795 123403760 3963.0 + 0 ENSG00000164056.10 protein_coding SPRY1 2 OTTHUMG00000133071.3 +47677 chr4 HAVANA gene 123490268 123522106 539.0 + 0 ENSG00000249125.1 lincRNA AC093821.1 2 OTTHUMG00000161303.1 overlapping_locus +47678 chr4 HAVANA gene 123505279 123527525 584.0 + 0 ENSG00000251526.1 lincRNA LINC02435 2 OTTHUMG00000161297.1 overlapping_locus +47679 chr4 HAVANA gene 123744923 123745673 477.0 - 0 ENSG00000226655.1 lincRNA AC096732.1 2 OTTHUMG00000155267.1 +47680 chr4 HAVANA gene 123745750 123746226 477.0 - 0 ENSG00000228489.1 processed_pseudogene RPL21P50 1 OTTHUMG00000155266.1 pseudo_consens +47681 chr4 HAVANA gene 123861860 123862015 156.0 - 0 ENSG00000250458.2 processed_pseudogene AC093767.1 2 OTTHUMG00000161296.2 +47682 chr4 HAVANA gene 123650267 123930406 7779.0 + 0 ENSG00000249464.5 lincRNA LINC01091 2 OTTHUMG00000161162.3 +47683 chr4 HAVANA gene 124062462 124062990 529.0 + 0 ENSG00000250484.2 processed_pseudogene PPIAP76 1 OTTHUMG00000161295.2 pseudo_consens +47684 chr4 HAVANA gene 124149377 124252044 430.0 - 0 ENSG00000249837.1 lincRNA AC121154.1 2 OTTHUMG00000161387.2 +47685 chr4 HAVANA gene 124435750 124437120 1371.0 - 0 ENSG00000248506.1 processed_pseudogene AC097474.1 1 OTTHUMG00000161385.1 pseudo_consens +47686 chr4 HAVANA gene 124462863 124463790 928.0 - 0 ENSG00000248565.2 processed_pseudogene TECRP2 1 OTTHUMG00000161388.2 pseudo_consens +47687 chr4 HAVANA gene 124499942 124558434 1771.0 - 0 ENSG00000261083.1 lincRNA LINC02516 2 OTTHUMG00000176090.2 +47688 chr4 HAVANA gene 124664052 124712732 8794.0 - 0 ENSG00000151458.11 protein_coding ANKRD50 2 OTTHUMG00000161398.1 +47689 chr4 ENSEMBL gene 125362819 125362929 111.0 + 0 ENSG00000201297.1 misc_RNA RF00019 3 +47690 chr4 HAVANA gene 125316399 125492932 16439.0 + 0 ENSG00000196159.11 protein_coding FAT4 2 OTTHUMG00000133100.4 ncRNA_host +47691 chr4 ENSEMBL gene 125507259 125507307 49.0 + 0 ENSG00000283550.1 miRNA MIR2054 3 +47692 chr4 HAVANA gene 125681177 125683668 1738.0 - 0 ENSG00000251436.2 processed_pseudogene NUP58P1 1 OTTHUMG00000161150.2 pseudo_consens +47693 chr4 HAVANA gene 125723267 125724217 951.0 - 0 ENSG00000249555.2 processed_pseudogene TMEM248P1 1 OTTHUMG00000161145.2 pseudo_consens +47694 chr4 HAVANA gene 125676718 125752793 393.0 + 0 ENSG00000250149.1 lincRNA AC105919.1 2 OTTHUMG00000161149.1 +47695 chr4 HAVANA gene 126070708 126072004 300.0 + 0 ENSG00000251649.1 lincRNA LINC02379 2 OTTHUMG00000161146.1 +47696 chr4 HAVANA gene 126106139 126106923 399.0 - 0 ENSG00000251005.1 processed_pseudogene AC105758.1 1 OTTHUMG00000161148.1 pseudo_consens +47697 chr4 HAVANA gene 126563509 126564776 1102.0 + 0 ENSG00000223620.3 processed_pseudogene RBM48P1 1 OTTHUMG00000161147.2 pseudo_consens +47698 chr4 ENSEMBL gene 127028107 127028219 113.0 - 0 ENSG00000199862.1 misc_RNA RF00019 3 +47699 chr4 HAVANA gene 127043430 127077762 648.0 - 0 ENSG00000250945.1 lincRNA AC096773.1 2 OTTHUMG00000161764.1 +47700 chr4 HAVANA gene 127096891 127470569 1077.0 - 0 ENSG00000248491.5 lincRNA AC093772.1 2 OTTHUMG00000161765.1 +47701 chr4 HAVANA gene 127493505 127493828 324.0 + 0 ENSG00000248209.1 processed_pseudogene AC097462.1 1 OTTHUMG00000161201.1 pseudo_consens +47702 chr4 HAVANA gene 127498327 127498807 481.0 + 0 ENSG00000249795.1 processed_pseudogene AC097462.2 1 OTTHUMG00000161200.1 pseudo_consens +47703 chr4 HAVANA gene 127623271 127726737 16066.0 + 0 ENSG00000164066.12 protein_coding INTU 1 OTTHUMG00000161202.4 +47704 chr4 HAVANA gene 127730378 127774299 1841.0 + 0 ENSG00000151475.5 protein_coding SLC25A31 2 OTTHUMG00000133300.4 +47705 chr4 HAVANA gene 127809170 127809477 308.0 + 0 ENSG00000282855.1 processed_pseudogene AC093591.3 1 OTTHUMG00000191509.1 pseudo_consens +47706 chr4 HAVANA gene 127812720 127813200 481.0 - 0 ENSG00000244021.4 processed_pseudogene AC093591.1 2 OTTHUMG00000157551.2 +47707 chr4 HAVANA gene 127781821 127840733 11621.0 + 0 ENSG00000164070.11 protein_coding HSPA4L 2 OTTHUMG00000133302.4 +47708 chr4 HAVANA gene 127840198 127844040 3843.0 - 0 ENSG00000261668.1 antisense AC093591.2 2 OTTHUMG00000176114.1 +47709 chr4 ENSEMBL gene 127891991 127892082 92.0 + 0 ENSG00000251821.1 snRNA RNU6-583P 3 +47710 chr4 HAVANA gene 127880861 127899195 4482.0 + 0 ENSG00000142731.10 protein_coding PLK4 1 OTTHUMG00000133301.6 ncRNA_host +47711 chr4 HAVANA gene 127917732 127966034 9103.0 - 0 ENSG00000164073.10 protein_coding MFSD8 2 OTTHUMG00000133303.8 +47712 chr4 HAVANA gene 127965306 128039927 6707.0 + 0 ENSG00000164074.15 protein_coding ABHD18 2 OTTHUMG00000133304.6 +47713 chr4 HAVANA gene 128069014 128069612 599.0 - 0 ENSG00000241651.4 processed_pseudogene AC099340.1 1 OTTHUMG00000157552.2 pseudo_consens +47714 chr4 HAVANA gene 128155389 128156204 816.0 + 0 ENSG00000248394.1 processed_pseudogene FOSL1P1 1 OTTHUMG00000161163.1 pseudo_consens,overlapping_locus +47715 chr4 HAVANA gene 128061268 128222931 8792.0 + 0 ENSG00000138709.18 protein_coding LARP1B 1 OTTHUMG00000133343.6 overlapping_locus +47716 chr4 HAVANA gene 128269237 128288829 4626.0 - 0 ENSG00000164040.16 protein_coding PGRMC2 2 OTTHUMG00000133342.4 +47717 chr4 HAVANA gene 128292751 128519394 3283.0 + 0 ENSG00000251432.6 lincRNA AC108062.1 2 OTTHUMG00000161321.3 +47718 chr4 HAVANA gene 128552590 128553416 303.0 - 0 ENSG00000273077.1 lincRNA AC110609.1 2 OTTHUMG00000186365.1 +47719 chr4 HAVANA gene 128567972 128570531 1623.0 - 0 ENSG00000248187.1 lincRNA AC078850.1 2 OTTHUMG00000161178.1 +47720 chr4 HAVANA gene 128582999 128601407 597.0 - 0 ENSG00000248802.1 lincRNA AC078850.2 2 OTTHUMG00000161177.1 +47721 chr4 HAVANA gene 128768228 128769948 1721.0 + 0 ENSG00000280711.1 lincRNA JADRR 2 OTTHUMG00000189573.1 +47722 chr4 HAVANA gene 128809623 128875224 9129.0 + 0 ENSG00000077684.15 protein_coding JADE1 2 OTTHUMG00000161176.5 +47723 chr4 HAVANA gene 128944628 128944956 329.0 + 0 ENSG00000275647.1 processed_pseudogene AC093783.1 2 OTTHUMG00000187591.1 +47724 chr4 ENSEMBL gene 129041766 129041877 108.0 + 0 ENSG00000281369.1 pseudogene AC093826.2 3 +47725 chr4 HAVANA gene 128864921 129093607 8292.0 - 0 ENSG00000151466.11 protein_coding SCLT1 1 OTTHUMG00000133346.5 +47726 chr4 HAVANA gene 129093317 129116640 7015.0 + 0 ENSG00000151470.12 protein_coding C4orf33 2 OTTHUMG00000133347.5 +47727 chr4 HAVANA gene 129133106 129134098 993.0 + 0 ENSG00000251345.2 processed_pseudogene AC093826.1 2 OTTHUMG00000161309.2 +47728 chr4 HAVANA gene 129135926 129139740 2743.0 - 0 ENSG00000248958.2 processed_pseudogene ZSWIM5P3 1 OTTHUMG00000161310.2 pseudo_consens +47729 chr4 HAVANA gene 129177386 129179094 285.0 + 0 ENSG00000251195.1 processed_pseudogene AC105417.1 2 OTTHUMG00000161196.1 +47730 chr4 HAVANA gene 129299175 129305022 575.0 - 0 ENSG00000250193.1 lincRNA AC082650.1 2 OTTHUMG00000161198.1 +47731 chr4 HAVANA gene 129724171 129771481 2456.0 - 0 ENSG00000246876.6 lincRNA LINC02466 2 OTTHUMG00000161199.1 +47732 chr4 HAVANA gene 129903010 129904163 1154.0 + 0 ENSG00000234125.5 processed_pseudogene EEF1GP8 1 OTTHUMG00000161195.1 pseudo_consens,overlapping_locus +47733 chr4 HAVANA gene 129771659 129955368 2477.0 + 0 ENSG00000249618.5 lincRNA LINC02465 2 OTTHUMG00000161197.1 overlapping_locus +47734 chr4 HAVANA gene 130376229 130386371 630.0 + 0 ENSG00000251326.1 lincRNA LINC02479 2 OTTHUMG00000161766.1 +47735 chr4 HAVANA gene 130494673 130495285 613.0 + 0 ENSG00000248877.2 processed_pseudogene PGBD4P4 2 OTTHUMG00000161057.2 +47736 chr4 HAVANA gene 130503357 130504344 988.0 - 0 ENSG00000249018.2 processed_pseudogene GAPDHP56 1 OTTHUMG00000159979.2 pseudo_consens +47737 chr4 HAVANA gene 130808507 130811933 3427.0 + 0 ENSG00000280059.1 TEC AC093831.2 2 OTTHUMG00000175957.1 +47738 chr4 HAVANA gene 130881027 130885641 434.0 - 0 ENSG00000250503.1 lincRNA AC093831.1 2 OTTHUMG00000161070.2 +47739 chr4 HAVANA gene 131112748 131113255 188.0 + 0 ENSG00000250213.2 processed_pseudogene AC025554.1 2 OTTHUMG00000161069.2 +47740 chr4 ENSEMBL gene 131273242 131273348 107.0 + 0 ENSG00000206782.1 snRNA RNU6-224P 3 +47741 chr4 HAVANA gene 131540281 131540489 209.0 + 0 ENSG00000248715.2 processed_pseudogene AC105424.1 2 OTTHUMG00000161093.2 overlapping_locus +47742 chr4 HAVANA gene 131380013 131541397 914.0 + 0 ENSG00000250102.5 lincRNA LINC02377 2 OTTHUMG00000161095.2 overlapping_locus +47743 chr4 ENSEMBL gene 131720260 131720543 284.0 - 0 ENSG00000241392.3 misc_RNA RN7SL205P 3 +47744 chr4 ENSEMBL gene 131768140 131768249 110.0 + 0 ENSG00000252014.1 snoRNA RF00156 3 +47745 chr4 HAVANA gene 131768233 131768578 346.0 + 0 ENSG00000249416.2 processed_pseudogene AC107393.1 2 OTTHUMG00000161094.2 +47746 chr4 HAVANA gene 131773302 131791482 1198.0 + 0 ENSG00000251676.1 lincRNA SNHG27 2 OTTHUMG00000161213.2 +47747 chr4 HAVANA gene 131857343 131857913 571.0 - 0 ENSG00000184139.8 processed_pseudogene RPL7AP28 1 OTTHUMG00000157555.2 pseudo_consens +47748 chr4 HAVANA gene 131930031 131975952 454.0 - 0 ENSG00000251555.1 lincRNA AC096711.2 2 OTTHUMG00000161235.1 +47749 chr4 HAVANA gene 132027175 132028434 347.0 - 0 ENSG00000249463.1 lincRNA AC096711.1 2 OTTHUMG00000161234.1 overlapping_locus +47750 chr4 HAVANA gene 132004810 132124031 582.0 - 0 ENSG00000251598.1 lincRNA AC096711.3 2 OTTHUMG00000161767.2 overlapping_locus +47751 chr4 HAVANA gene 132367786 132368479 694.0 - 0 ENSG00000251051.1 processed_pseudogene ELL2P2 1 OTTHUMG00000161251.1 pseudo_consens +47752 chr4 HAVANA gene 132435802 132447235 464.0 - 0 ENSG00000248369.1 lincRNA AC114741.1 1 OTTHUMG00000161769.1 +47753 chr4 HAVANA gene 132592084 132592536 453.0 + 0 ENSG00000249038.2 processed_pseudogene AARSP1 1 OTTHUMG00000161188.2 pseudo_consens,overlapping_locus +47754 chr4 HAVANA gene 132591089 132678503 508.0 + 0 ENSG00000251398.1 lincRNA LINC01256 2 OTTHUMG00000161768.1 overlapping_locus +47755 chr4 HAVANA gene 132836772 132981677 587.0 - 0 ENSG00000251488.1 lincRNA AC115622.1 2 OTTHUMG00000161298.1 +47756 chr4 HAVANA gene 132985510 132988677 462.0 - 0 ENSG00000249513.2 lincRNA AC110751.1 2 OTTHUMG00000161302.4 +47757 chr4 HAVANA gene 133124104 133126063 1960.0 + 0 ENSG00000248735.2 processed_pseudogene R3HDM2P1 1 OTTHUMG00000161300.2 pseudo_consens +47758 chr4 HAVANA gene 133075311 133149116 3274.0 - 0 ENSG00000250241.5 lincRNA AC105383.1 1 OTTHUMG00000161299.2 +47759 chr4 HAVANA gene 133149315 133208606 10161.0 + 0 ENSG00000138650.8 protein_coding PCDH10 1 OTTHUMG00000161301.4 +47760 chr4 HAVANA gene 133574566 133575208 286.0 - 0 ENSG00000250191.1 unprocessed_pseudogene AC105252.1 2 OTTHUMG00000161290.1 +47761 chr4 HAVANA gene 133871246 134010690 619.0 - 0 ENSG00000251388.1 lincRNA AC079380.1 2 OTTHUMG00000161291.1 +47762 chr4 HAVANA gene 134196333 134201748 4944.0 - 0 ENSG00000254535.3 protein_coding PABPC4L 2 OTTHUMG00000161292.2 retrogene +47763 chr4 HAVANA gene 134255173 134327473 1327.0 - 0 ENSG00000251199.5 lincRNA AC109830.1 1 OTTHUMG00000161471.1 +47764 chr4 HAVANA gene 134327063 134328798 1736.0 + 0 ENSG00000248191.1 processed_pseudogene PES1P1 1 OTTHUMG00000161470.1 pseudo_consens +47765 chr4 HAVANA gene 134423867 134457852 430.0 + 0 ENSG00000251291.1 lincRNA LINC02462 1 OTTHUMG00000161469.1 +47766 chr4 HAVANA gene 134759399 134817289 489.0 + 0 ENSG00000249000.1 lincRNA AC093722.1 2 OTTHUMG00000161215.1 +47767 chr4 HAVANA gene 134932889 134934131 646.0 - 0 ENSG00000249847.1 lincRNA AC104619.2 2 OTTHUMG00000161221.1 +47768 chr4 HAVANA gene 134944275 134944523 249.0 + 0 ENSG00000251228.1 processed_pseudogene AC104619.4 1 OTTHUMG00000161219.1 pseudo_consens +47769 chr4 HAVANA gene 134952259 134952889 631.0 - 0 ENSG00000241411.1 processed_pseudogene AC104619.1 1 OTTHUMG00000157557.1 pseudo_consens +47770 chr4 HAVANA gene 135045464 135046850 1387.0 + 0 ENSG00000250144.1 processed_pseudogene AC104619.3 1 OTTHUMG00000161220.1 pseudo_consens +47771 chr4 HAVANA gene 135067233 135097658 1121.0 + 0 ENSG00000248434.1 lincRNA AC107463.1 2 OTTHUMG00000161217.1 +47772 chr4 HAVANA gene 135112905 135123779 981.0 - 0 ENSG00000248456.1 lincRNA LINC02485 2 OTTHUMG00000161216.1 +47773 chr4 ENSEMBL gene 135315418 135315522 105.0 - 0 ENSG00000283432.1 snRNA RF00026 3 +47774 chr4 HAVANA gene 135371177 135371924 748.0 - 0 ENSG00000250834.1 processed_pseudogene KRT18P54 1 OTTHUMG00000161222.1 pseudo_consens +47775 chr4 HAVANA gene 135565117 135567157 2041.0 - 0 ENSG00000248104.1 processed_pseudogene TARS2P1 1 OTTHUMG00000161214.1 pseudo_consens +47776 chr4 HAVANA gene 135792384 135805904 564.0 - 0 ENSG00000250865.1 lincRNA AC105362.1 2 OTTHUMG00000161218.1 +47777 chr4 HAVANA gene 135866983 135913680 546.0 - 0 ENSG00000248330.5 lincRNA LINC00613 2 OTTHUMG00000161224.1 +47778 chr4 ENSEMBL gene 135995929 135996092 164.0 - 0 ENSG00000207322.1 snRNA RNU1-89P 3 +47779 chr4 HAVANA gene 136004509 136004902 394.0 - 0 ENSG00000251492.1 processed_pseudogene AC104136.1 1 OTTHUMG00000161223.1 pseudo_consens +47780 chr4 HAVANA gene 136097797 136099240 1444.0 - 0 ENSG00000261166.1 lincRNA AC073429.2 2 OTTHUMG00000176095.1 +47781 chr4 HAVANA gene 136125909 136138874 503.0 + 0 ENSG00000250665.1 lincRNA AC073429.1 2 OTTHUMG00000161238.2 +47782 chr4 HAVANA gene 136355110 136356336 1227.0 - 0 ENSG00000249311.4 processed_pseudogene TERF1P3 1 OTTHUMG00000161240.2 pseudo_consens,overlapping_locus +47783 chr4 HAVANA gene 136118675 136395471 1358.0 - 0 ENSG00000251567.5 lincRNA AC018680.1 2 OTTHUMG00000161242.1 overlapping_locus +47784 chr4 HAVANA gene 136553236 136553739 504.0 + 0 ENSG00000279749.1 TEC AC093875.1 2 OTTHUMG00000161241.1 +47785 chr4 HAVANA gene 137193756 137198367 1576.0 + 0 ENSG00000250341.1 lincRNA LINC02510 2 OTTHUMG00000161278.1 +47786 chr4 HAVANA gene 136796722 137212799 1935.0 - 0 ENSG00000248869.5 lincRNA LINC02511 2 OTTHUMG00000161243.3 +47787 chr4 HAVANA gene 137301001 137301187 187.0 - 0 ENSG00000250813.1 processed_pseudogene SERF1AP1 1 OTTHUMG00000161250.1 pseudo_consens +47788 chr4 HAVANA gene 137425426 137425864 439.0 - 0 ENSG00000251440.2 processed_pseudogene STMN1P2 1 OTTHUMG00000161277.2 pseudo_consens +47789 chr4 HAVANA gene 137448087 137448501 415.0 + 0 ENSG00000213448.3 processed_pseudogene RPS23P2 1 OTTHUMG00000157567.2 pseudo_consens +47790 chr4 HAVANA gene 137518918 137532494 6686.0 - 0 ENSG00000189184.11 protein_coding PCDH18 1 OTTHUMG00000161348.2 +47791 chr4 HAVANA gene 137601899 137602433 535.0 - 0 ENSG00000280352.1 TEC AC116563.2 2 OTTHUMG00000161344.1 +47792 chr4 HAVANA gene 137545731 137603430 2264.0 + 0 ENSG00000251632.1 lincRNA LINC02172 2 OTTHUMG00000161349.1 +47793 chr4 HAVANA gene 137645265 137655174 396.0 - 0 ENSG00000250126.1 lincRNA AC116563.1 2 OTTHUMG00000161347.1 +47794 chr4 HAVANA gene 137690477 137734977 512.0 - 0 ENSG00000250777.1 lincRNA AC131956.2 2 OTTHUMG00000161346.1 +47795 chr4 HAVANA gene 137807706 137816402 258.0 + 0 ENSG00000250034.1 lincRNA AC131956.1 1 OTTHUMG00000161345.1 +47796 chr4 HAVANA gene 138027422 138130709 2365.0 - 0 ENSG00000248307.5 lincRNA LINC00616 2 OTTHUMG00000161281.1 +47797 chr4 HAVANA gene 138057464 138178177 6161.0 + 0 ENSG00000250033.5 processed_transcript SLC7A11-AS1 2 OTTHUMG00000161284.2 +47798 chr4 HAVANA gene 138164097 138242349 9645.0 - 0 ENSG00000151012.13 protein_coding SLC7A11 2 OTTHUMG00000133396.2 +47799 chr4 HAVANA gene 138277115 138281784 405.0 - 0 ENSG00000249091.1 lincRNA AC093903.1 2 OTTHUMG00000161283.2 +47800 chr4 HAVANA gene 138298856 138312658 455.0 - 0 ENSG00000248397.1 lincRNA LINC00498 2 OTTHUMG00000161288.1 +47801 chr4 HAVANA gene 138309711 138424344 1350.0 + 0 ENSG00000251372.5 lincRNA LINC00499 2 OTTHUMG00000161286.1 +47802 chr4 HAVANA gene 138425523 138436869 539.0 + 0 ENSG00000249381.1 lincRNA LINC00500 2 OTTHUMG00000161287.1 +47803 chr4 HAVANA gene 138481255 138482096 842.0 - 0 ENSG00000248305.1 processed_pseudogene AC105416.1 1 OTTHUMG00000161285.1 pseudo_consens +47804 chr4 HAVANA gene 138560704 138561941 1238.0 + 0 ENSG00000248795.1 processed_pseudogene AC098859.1 1 OTTHUMG00000161280.1 pseudo_consens +47805 chr4 HAVANA gene 138664725 138665569 563.0 - 0 ENSG00000250977.1 lincRNA AC098859.2 2 OTTHUMG00000161289.1 +47806 chr4 HAVANA gene 138773550 138801639 1066.0 + 0 ENSG00000250501.2 lincRNA AC093766.1 2 OTTHUMG00000161282.1 +47807 chr4 HAVANA gene 138923930 138924232 303.0 - 0 ENSG00000250577.1 lincRNA AC109927.2 2 OTTHUMG00000162042.1 overlapping_locus +47808 chr4 HAVANA gene 138819954 139012646 664.0 - 0 ENSG00000250195.1 antisense AC109927.1 2 OTTHUMG00000161774.1 overlapping_locus +47809 chr4 HAVANA gene 139015789 139045939 2504.0 + 0 ENSG00000151014.5 protein_coding NOCT 2 OTTHUMG00000161271.6 +47810 chr4 ENSEMBL gene 139055475 139055578 104.0 + 0 ENSG00000252503.1 snRNA RNU6-531P 3 +47811 chr4 ENSEMBL gene 139100377 139100658 282.0 + 0 ENSG00000240723.3 misc_RNA RN7SL382P 3 +47812 chr4 HAVANA gene 139114930 139115374 445.0 - 0 ENSG00000179967.11 processed_pseudogene PPP1R14BP3 1 OTTHUMG00000161326.4 pseudo_consens,overlapping_locus +47813 chr4 ENSEMBL gene 139155153 139155444 292.0 + 0 ENSG00000276396.1 misc_RNA RF00017 3 +47814 chr4 HAVANA gene 139028112 139177218 8560.0 - 0 ENSG00000109381.19 protein_coding ELF2 2 OTTHUMG00000133383.7 overlapping_locus +47815 chr4 ENSEMBL gene 139185441 139185746 306.0 + 0 ENSG00000265892.2 misc_RNA RN7SL311P 3 +47816 chr4 ENSEMBL gene 139200395 139200513 119.0 + 0 ENSG00000207384.1 misc_RNA RF00019 3 +47817 chr4 ENSEMBL gene 139231026 139231119 94.0 - 0 ENSG00000252362.1 snRNA RNU6-506P 3 +47818 chr4 ENSEMBL gene 139256657 139256760 104.0 - 0 ENSG00000206722.1 snRNA RNU6-1074P 3 +47819 chr4 HAVANA gene 139266163 139280338 1339.0 - 0 ENSG00000137463.4 protein_coding MGARP 2 OTTHUMG00000161325.1 overlapping_locus +47820 chr4 HAVANA gene 139266880 139302551 1941.0 - 0 ENSG00000109390.11 protein_coding NDUFC1 2 OTTHUMG00000133387.3 overlapping_locus +47821 chr4 ENSEMBL gene 139318378 139318486 109.0 + 0 ENSG00000200520.1 snRNA RNU6-1214P 3 +47822 chr4 HAVANA gene 139301455 139420033 9712.0 + 0 ENSG00000164134.12 protein_coding NAA15 2 OTTHUMG00000137363.6 ncRNA_host +47823 chr4 HAVANA gene 139426299 139430884 1240.0 - 0 ENSG00000248863.2 transcribed_processed_pseudogene AC097376.1 2 OTTHUMG00000161324.2 overlapping_locus +47824 chr4 ENSEMBL gene 139436368 139436494 127.0 - 0 ENSG00000239005.1 snoRNA RF01225 3 +47825 chr4 HAVANA gene 139411927 139454034 7954.0 - 0 ENSG00000273247.5 antisense AC097376.2 2 OTTHUMG00000186367.2 ncRNA_host,overlapping_locus +47826 chr4 HAVANA gene 139453232 139476609 5028.0 + 0 ENSG00000172007.5 protein_coding RAB33B 2 OTTHUMG00000133384.3 +47827 chr4 HAVANA gene 139546266 139546727 462.0 + 0 ENSG00000249302.2 processed_pseudogene FTH1P24 1 OTTHUMG00000161273.2 pseudo_consens +47828 chr4 HAVANA gene 139556799 139557643 845.0 + 0 ENSG00000272717.1 antisense AC112236.2 2 OTTHUMG00000186389.1 +47829 chr4 HAVANA gene 139495941 139606699 13916.0 - 0 ENSG00000145391.13 protein_coding SETD7 1 OTTHUMG00000133385.9 +47830 chr4 HAVANA gene 139618136 139623232 1098.0 - 0 ENSG00000261268.1 lincRNA AC112236.1 2 OTTHUMG00000175997.1 +47831 chr4 ENSEMBL gene 139685127 139685427 301.0 - 0 ENSG00000201533.1 misc_RNA RN7SKP237 3 +47832 chr4 HAVANA gene 139698144 139698554 411.0 - 0 ENSG00000178458.5 processed_pseudogene H3F3AP6 2 OTTHUMG00000161274.2 +47833 chr4 HAVANA gene 139665768 139740745 3182.0 + 0 ENSG00000085871.8 protein_coding MGST2 2 OTTHUMG00000133382.4 +47834 chr4 ENSEMBL gene 139794125 139794433 309.0 - 0 ENSG00000252233.1 misc_RNA RN7SKP253 3 +47835 chr4 HAVANA gene 140128015 140134565 657.0 + 0 ENSG00000250698.1 antisense AC131182.1 1 OTTHUMG00000161374.1 +47836 chr4 HAVANA gene 139716753 140154184 7012.0 - 0 ENSG00000196782.12 protein_coding MAML3 2 OTTHUMG00000161441.3 ncRNA_host +47837 chr4 HAVANA gene 140314163 140314550 388.0 - 0 ENSG00000249754.2 processed_pseudogene NDUFB4P9 1 OTTHUMG00000161375.2 pseudo_consens,overlapping_locus +47838 chr4 HAVANA gene 140366240 140366861 622.0 - 0 ENSG00000241923.2 processed_pseudogene RPL14P3 1 OTTHUMG00000157571.2 pseudo_consens,overlapping_locus +47839 chr4 HAVANA gene 140283724 140373381 2410.0 - 0 ENSG00000196951.10 antisense SCOC-AS1 2 OTTHUMG00000161377.2 overlapping_locus +47840 chr4 HAVANA gene 140257286 140385726 6294.0 + 0 ENSG00000153130.17 protein_coding SCOC 1 OTTHUMG00000133416.4 +47841 chr4 HAVANA gene 140388455 140427968 3127.0 - 0 ENSG00000153132.12 protein_coding CLGN 2 OTTHUMG00000133414.3 +47842 chr4 HAVANA gene 140442262 140498377 5595.0 - 0 ENSG00000205301.11 protein_coding MGAT4D 1 OTTHUMG00000161376.4 +47843 chr4 HAVANA gene 140498402 140501330 2929.0 + 0 ENSG00000280262.1 TEC AC093671.1 2 OTTHUMG00000175894.1 +47844 chr4 HAVANA gene 140524158 140553770 6627.0 + 0 ENSG00000179387.9 protein_coding ELMOD2 2 OTTHUMG00000133417.6 +47845 chr4 HAVANA gene 140559434 140568805 1462.0 - 0 ENSG00000109424.3 protein_coding UCP1 2 OTTHUMG00000133415.1 +47846 chr4 ENSEMBL gene 140577925 140578222 298.0 + 0 ENSG00000242102.3 misc_RNA RN7SL152P 3 +47847 chr4 HAVANA gene 140600401 140600575 175.0 - 0 ENSG00000248621.2 processed_pseudogene AC108019.1 2 OTTHUMG00000161426.2 +47848 chr4 HAVANA gene 140641840 140645489 3650.0 - 0 ENSG00000249661.1 processed_pseudogene TNRC18P1 1 OTTHUMG00000161424.1 pseudo_consens,overlapping_locus +47849 chr4 ENSEMBL gene 140700835 140700942 108.0 - 0 ENSG00000207155.1 misc_RNA RNY1P14 3 +47850 chr4 HAVANA gene 140712168 140716081 402.0 + 0 ENSG00000248335.1 antisense AC096733.1 1 OTTHUMG00000161425.1 +47851 chr4 HAVANA gene 140620765 140756120 5603.0 - 0 ENSG00000109436.7 protein_coding TBC1D9 2 OTTHUMG00000161405.2 ncRNA_host,overlapping_locus +47852 chr4 HAVANA gene 140756528 140757921 1394.0 + 0 ENSG00000273472.1 lincRNA AC096733.2 2 OTTHUMG00000186399.1 +47853 chr4 ENSEMBL gene 140779039 140779141 103.0 - 0 ENSG00000222613.1 misc_RNA RF00019 3 +47854 chr4 HAVANA gene 140859807 141212877 11007.0 - 0 ENSG00000170153.10 protein_coding RNF150 1 OTTHUMG00000161380.6 +47855 chr4 HAVANA gene 141220887 141234697 2536.0 + 0 ENSG00000109445.10 protein_coding ZNF330 2 OTTHUMG00000133413.7 +47856 chr4 HAVANA gene 141240739 141278789 1037.0 - 0 ENSG00000248747.1 lincRNA AC107220.1 1 OTTHUMG00000161379.1 +47857 chr4 HAVANA gene 141319450 141332618 3750.0 - 0 ENSG00000248810.1 lincRNA LINC02432 2 OTTHUMG00000161381.2 +47858 chr4 HAVANA gene 141405172 141407586 2415.0 + 0 ENSG00000250189.2 processed_pseudogene AC097504.1 1 OTTHUMG00000161399.3 pseudo_consens +47859 chr4 HAVANA gene 141430831 141431284 454.0 + 0 ENSG00000272632.1 lincRNA AC097504.2 2 OTTHUMG00000186403.1 +47860 chr4 HAVANA gene 141569931 141576077 138.0 - 0 ENSG00000250141.1 lincRNA LINC02276 2 OTTHUMG00000161339.1 +47861 chr4 HAVANA gene 141636599 141733987 7860.0 + 0 ENSG00000164136.16 protein_coding IL15 2 OTTHUMG00000133418.7 +47862 chr4 HAVANA gene 142286917 142287625 709.0 - 0 ENSG00000242134.2 processed_pseudogene RPL5P13 1 OTTHUMG00000157573.2 pseudo_consens,overlapping_locus +47863 chr4 HAVANA gene 142317238 142317546 309.0 + 0 ENSG00000250835.1 processed_pseudogene LSM3P4 1 OTTHUMG00000161338.1 pseudo_consens +47864 chr4 HAVANA gene 142514446 142518983 440.0 + 0 ENSG00000251248.1 lincRNA AC139720.2 2 OTTHUMG00000161340.1 +47865 chr4 HAVANA gene 142566019 142660950 512.0 + 0 ENSG00000249806.1 lincRNA AC139720.1 2 OTTHUMG00000161342.1 +47866 chr4 HAVANA gene 142023160 142847432 14153.0 - 0 ENSG00000109452.12 protein_coding INPP4B 2 OTTHUMG00000161341.2 overlapping_locus +47867 chr4 HAVANA gene 143045086 143045878 793.0 + 0 ENSG00000251300.1 processed_pseudogene AC104596.2 1 OTTHUMG00000161407.1 pseudo_consens +47868 chr4 HAVANA gene 142933195 143184861 1016.0 - 0 ENSG00000250326.1 antisense AC104596.1 1 OTTHUMG00000161406.1 +47869 chr4 HAVANA gene 143184917 143223830 7787.0 + 0 ENSG00000170185.9 protein_coding USP38 2 OTTHUMG00000161420.1 +47870 chr4 ENSEMBL gene 143309466 143309566 101.0 + 0 ENSG00000200049.1 misc_RNA RF00019 3 +47871 chr4 HAVANA gene 143286293 143329858 624.0 + 0 ENSG00000250969.1 lincRNA AC097658.2 2 OTTHUMG00000161553.1 ncRNA_host +47872 chr4 ENSEMBL gene 143343460 143343535 76.0 + 0 ENSG00000265623.1 miRNA MIR3139 3 +47873 chr4 HAVANA gene 143349275 143350117 843.0 - 0 ENSG00000228981.3 processed_pseudogene AC097658.1 1 OTTHUMG00000157574.1 pseudo_consens +47874 chr4 HAVANA gene 143424753 143426013 1261.0 + 0 ENSG00000243175.1 transcribed_processed_pseudogene RPSAP36 1 OTTHUMG00000157578.1 pseudo_consens,overlapping_locus +47875 chr4 HAVANA gene 143336762 143474568 10119.0 + 0 ENSG00000109458.8 protein_coding GAB1 1 OTTHUMG00000161432.13 ncRNA_host,overlapping_locus +47876 chr4 HAVANA gene 143497412 143498126 371.0 - 0 ENSG00000250540.1 processed_pseudogene AC104685.1 2 OTTHUMG00000161475.1 +47877 chr4 HAVANA gene 143513472 143514635 945.0 - 0 ENSG00000245112.2 antisense SMARCA5-AS1 2 OTTHUMG00000161539.1 +47878 chr4 HAVANA gene 143555082 143555583 502.0 - 0 ENSG00000248924.2 transcribed_processed_pseudogene AC139713.1 2 OTTHUMG00000161538.2 +47879 chr4 HAVANA gene 143513463 143557486 8385.0 + 0 ENSG00000153147.5 protein_coding SMARCA5 2 OTTHUMG00000161474.3 +47880 chr4 HAVANA gene 143559472 143561460 1989.0 + 0 ENSG00000236296.8 transcribed_processed_pseudogene GUSBP5 1 OTTHUMG00000150378.4 pseudo_consens,overlapping_locus +47881 chr4 HAVANA gene 143577302 143700675 6869.0 - 0 ENSG00000183090.5 protein_coding FREM3 1 OTTHUMG00000161577.1 +47882 chr4 HAVANA gene 143760399 143762093 1171.0 - 0 ENSG00000250345.2 processed_pseudogene AC104090.1 1 OTTHUMG00000161576.2 pseudo_consens +47883 chr4 HAVANA gene 143870867 143905563 2004.0 - 0 ENSG00000197465.13 protein_coding GYPE 2 OTTHUMG00000161402.1 +47884 chr4 HAVANA gene 143911514 143912053 540.0 - 0 ENSG00000249741.2 processed_pseudogene AC093890.1 1 OTTHUMG00000161401.2 pseudo_consens +47885 chr4 HAVANA gene 143996104 144019345 1566.0 - 0 ENSG00000250361.8 protein_coding GYPB 2 OTTHUMG00000161404.5 +47886 chr4 HAVANA gene 144109303 144140786 4286.0 - 0 ENSG00000170180.21 protein_coding GYPA 2 OTTHUMG00000192585.1 overlapping_locus +47887 chr4 HAVANA gene 143559457 144188367 12703.0 + 0 ENSG00000251600.6 processed_transcript AC139713.2 2 OTTHUMG00000161311.4 overlapping_locus +47888 chr4 HAVANA gene 144505900 144509001 3102.0 + 0 ENSG00000261129.1 lincRNA AC106871.1 2 OTTHUMG00000176043.1 +47889 chr4 HAVANA gene 144572238 144572983 746.0 + 0 ENSG00000250504.2 processed_pseudogene KRT18P51 1 OTTHUMG00000161431.2 pseudo_consens +47890 chr4 HAVANA gene 144642922 144661357 1557.0 - 0 ENSG00000248890.1 antisense HHIP-AS1 2 OTTHUMG00000161429.1 +47891 chr4 ENSEMBL gene 144739762 144739941 180.0 - 0 ENSG00000273621.1 misc_RNA RF02271 3 +47892 chr4 HAVANA gene 144646021 144745271 12074.0 + 0 ENSG00000164161.9 protein_coding HHIP 2 OTTHUMG00000161428.2 +47893 chr4 HAVANA gene 144845625 144847344 1720.0 + 0 ENSG00000249193.1 processed_pseudogene HSPD1P5 1 OTTHUMG00000161476.1 pseudo_consens +47894 chr4 HAVANA gene 144111039 144870953 1902.0 - 0 ENSG00000285783.1 processed_transcript AC098588.2 2 OTTHUMG00000193430.1 ncRNA_host,overlapping_locus +47895 chr4 HAVANA gene 144851572 144874787 2807.0 + 0 ENSG00000250406.1 lincRNA AC109811.1 2 OTTHUMG00000161479.1 +47896 chr4 HAVANA gene 144920713 144921164 452.0 - 0 ENSG00000251452.2 processed_pseudogene AC109811.2 1 OTTHUMG00000161481.2 pseudo_consens +47897 chr4 ENSEMBL gene 145035132 145035436 305.0 + 0 ENSG00000222594.1 misc_RNA RN7SKP235 3 +47898 chr4 HAVANA gene 144210701 145098174 1890.0 - 0 ENSG00000285713.1 protein_coding AC098588.1 2 OTTHUMG00000161403.12 ncRNA_host,overlapping_locus +47899 chr4 HAVANA gene 144831908 145098541 4522.0 - 0 ENSG00000164162.13 protein_coding ANAPC10 2 OTTHUMG00000161477.6 overlapping_locus +47900 chr4 HAVANA gene 145097932 145129179 6265.0 + 0 ENSG00000164163.10 protein_coding ABCE1 2 OTTHUMG00000161478.3 +47901 chr4 ENSEMBL gene 145149537 145149649 113.0 - 0 ENSG00000238713.1 misc_RNA RF00019 3 +47902 chr4 HAVANA gene 145110838 145180161 9085.0 - 0 ENSG00000164164.16 protein_coding OTUD4 2 OTTHUMG00000161480.7 ncRNA_host +47903 chr4 HAVANA gene 145269810 145270558 423.0 - 0 ENSG00000240992.1 processed_pseudogene RPS23P4 1 OTTHUMG00000157579.1 pseudo_consens +47904 chr4 HAVANA gene 145335263 145340421 1151.0 - 0 ENSG00000272727.1 lincRNA LINC02266 2 OTTHUMG00000186407.1 +47905 chr4 HAVANA gene 145375543 145376253 711.0 + 0 ENSG00000251333.3 processed_pseudogene RTN3P1 1 OTTHUMG00000161594.2 pseudo_consens +47906 chr4 HAVANA gene 145376909 145377957 1049.0 + 0 ENSG00000278943.1 TEC AC079228.1 2 OTTHUMG00000176257.2 +47907 chr4 HAVANA gene 145456005 145456844 840.0 + 0 ENSG00000248745.2 processed_pseudogene NMNAT1P4 1 OTTHUMG00000161593.2 pseudo_consens +47908 chr4 HAVANA gene 145497073 145502971 1090.0 - 0 ENSG00000250582.1 antisense SMAD1-AS2 2 OTTHUMG00000162185.1 +47909 chr4 HAVANA gene 145514615 145517118 481.0 - 0 ENSG00000250902.1 antisense SMAD1-AS1 2 OTTHUMG00000162186.1 +47910 chr4 HAVANA gene 145481194 145558079 6058.0 + 0 ENSG00000170365.9 protein_coding SMAD1 1 OTTHUMG00000161592.13 +47911 chr4 HAVANA gene 145624159 145626035 1877.0 - 0 ENSG00000249245.2 processed_pseudogene NCOA4P3 1 OTTHUMG00000161368.4 pseudo_consens +47912 chr4 HAVANA gene 145642336 145650624 745.0 - 0 ENSG00000248356.1 antisense AC093864.1 2 OTTHUMG00000162183.1 +47913 chr4 HAVANA gene 145599042 145660035 8882.0 + 0 ENSG00000151611.14 protein_coding MMAA 2 OTTHUMG00000161369.7 +47914 chr4 HAVANA gene 145680115 145771032 1122.0 + 0 ENSG00000237136.7 protein_coding C4orf51 2 OTTHUMG00000161367.3 +47915 chr4 HAVANA gene 145830456 145832980 2525.0 - 0 ENSG00000279481.1 TEC AC104791.2 2 OTTHUMG00000161591.1 overlapping_locus +47916 chr4 HAVANA gene 145833118 145839580 794.0 + 0 ENSG00000251687.1 antisense AC104791.1 2 OTTHUMG00000162028.1 +47917 chr4 HAVANA gene 145757627 145938635 8433.0 - 0 ENSG00000151612.15 protein_coding ZNF827 1 OTTHUMG00000161362.5 overlapping_locus +47918 chr4 ENSEMBL gene 145958128 145958240 113.0 - 0 ENSG00000201314.1 misc_RNA RF00019 3 +47919 chr4 HAVANA gene 146052604 146056762 4159.0 - 0 ENSG00000260303.1 lincRNA AC108206.1 2 OTTHUMG00000176087.1 +47920 chr4 HAVANA gene 146077846 146108157 522.0 - 0 ENSG00000251024.1 lincRNA AC097372.2 2 OTTHUMG00000162029.3 +47921 chr4 HAVANA gene 146109455 146121913 2257.0 - 0 ENSG00000248809.5 lincRNA LINC01095 2 OTTHUMG00000161439.1 +47922 chr4 HAVANA gene 146180851 146181316 466.0 + 0 ENSG00000279845.1 TEC AC097372.3 2 OTTHUMG00000161590.1 overlapping_locus +47923 chr4 HAVANA gene 146175685 146200000 3987.0 + 0 ENSG00000164167.11 protein_coding LSM6 2 OTTHUMG00000161440.4 overlapping_locus +47924 chr4 HAVANA gene 146214515 146230878 2260.0 + 0 ENSG00000250673.2 protein_coding REELD1 2 OTTHUMG00000161438.6 +47925 chr4 HAVANA gene 146231892 146232267 376.0 + 0 ENSG00000280250.1 TEC AC097372.4 2 OTTHUMG00000161588.1 +47926 chr4 HAVANA gene 146241806 146243669 732.0 + 0 ENSG00000251010.1 antisense AC097372.1 2 OTTHUMG00000162030.1 +47927 chr4 ENSEMBL gene 146408583 146408688 106.0 + 0 ENSG00000278438.1 miRNA MIR7849 3 +47928 chr4 HAVANA gene 146253975 146521964 6687.0 - 0 ENSG00000120519.14 protein_coding SLC10A7 2 OTTHUMG00000161437.2 +47929 chr4 ENSEMBL gene 146580048 146580210 163.0 + 0 ENSG00000207182.1 snRNA RNU1-44P 3 +47930 chr4 HAVANA gene 146638893 146642474 3144.0 + 0 ENSG00000151615.3 protein_coding POU4F2 2 OTTHUMG00000162045.1 +47931 chr4 HAVANA gene 146934001 146945471 524.0 + 0 ENSG00000248764.1 antisense AC092435.2 2 OTTHUMG00000162048.1 +47932 chr4 HAVANA gene 146706638 146945882 3332.0 - 0 ENSG00000137473.17 protein_coding TTC29 2 OTTHUMG00000162047.6 +47933 chr4 HAVANA gene 146957438 146975457 801.0 + 0 ENSG00000248346.1 lincRNA AC092435.1 2 OTTHUMG00000162046.1 +47934 chr4 HAVANA gene 147005492 147009145 3654.0 + 0 ENSG00000260090.1 lincRNA AC092435.3 2 OTTHUMG00000162098.1 +47935 chr4 HAVANA gene 147025914 147030072 4159.0 + 0 ENSG00000279376.1 TEC AC092435.4 2 OTTHUMG00000175959.1 +47936 chr4 ENSEMBL gene 147344629 147344717 89.0 - 0 ENSG00000221369.1 miRNA MIR548G 3 +47937 chr4 HAVANA gene 147425974 147426351 378.0 - 0 ENSG00000241281.1 processed_pseudogene AC010683.1 1 OTTHUMG00000157580.1 pseudo_consens +47938 chr4 HAVANA gene 147458724 147459321 598.0 - 0 ENSG00000249004.1 processed_pseudogene PRMT5P1 1 OTTHUMG00000161356.1 pseudo_consens +47939 chr4 HAVANA gene 147487971 147496062 8092.0 + 0 ENSG00000280219.1 TEC AC093908.1 2 OTTHUMG00000161357.1 overlapping_locus +47940 chr4 HAVANA gene 147506091 147506765 675.0 + 0 ENSG00000251254.1 processed_pseudogene GTF2F2P1 1 OTTHUMG00000161355.1 pseudo_consens,overlapping_locus +47941 chr4 HAVANA gene 147480917 147544954 4238.0 + 0 ENSG00000151617.16 protein_coding EDNRA 2 OTTHUMG00000161354.2 overlapping_locus +47942 chr4 HAVANA gene 147567606 147594587 1028.0 + 0 ENSG00000251688.1 lincRNA LINC02507 2 OTTHUMG00000161359.1 +47943 chr4 HAVANA gene 147609552 147617245 568.0 - 0 ENSG00000251298.1 antisense AC093835.1 2 OTTHUMG00000161360.1 +47944 chr4 HAVANA gene 147617383 147672044 4712.0 + 0 ENSG00000164168.7 protein_coding TMEM184C 2 OTTHUMG00000161358.1 +47945 chr4 HAVANA gene 147637785 147684230 4019.0 - 0 ENSG00000164169.12 protein_coding PRMT9 2 OTTHUMG00000161361.1 +47946 chr4 ENSEMBL gene 147745303 147745417 115.0 - 0 ENSG00000252951.1 rRNA_pseudogene RNA5SP165 3 +47947 chr4 ENSEMBL gene 147782595 147782668 74.0 + 0 ENSG00000264274.1 miRNA MIR4799 3 +47948 chr4 ENSEMBL gene 147808926 147809209 284.0 + 0 ENSG00000240014.3 misc_RNA RN7SL254P 3 +47949 chr4 HAVANA gene 147916529 147917386 858.0 - 0 ENSG00000270387.1 processed_pseudogene AC115621.1 1 OTTHUMG00000184947.1 pseudo_consens +47950 chr4 HAVANA gene 147732063 148072780 10759.0 + 0 ENSG00000071205.11 protein_coding ARHGAP10 1 OTTHUMG00000161460.1 ncRNA_host +47951 chr4 HAVANA gene 148146471 148208880 680.0 + 0 ENSG00000250354.1 antisense AC069272.1 2 OTTHUMG00000161459.1 +47952 chr4 HAVANA gene 148078762 148444698 6607.0 - 0 ENSG00000151623.14 protein_coding NR3C2 1 OTTHUMG00000161455.2 +47953 chr4 HAVANA gene 148526493 148527139 647.0 - 0 ENSG00000251418.2 processed_pseudogene ASS1P8 1 OTTHUMG00000161456.2 pseudo_consens +47954 chr4 ENSEMBL gene 148557947 148558048 102.0 + 0 ENSG00000201846.1 rRNA_pseudogene RNA5SP166 3 +47955 chr4 HAVANA gene 148693032 148694323 518.0 + 0 ENSG00000250357.1 lincRNA AC108935.1 1 OTTHUMG00000161457.1 +47956 chr4 HAVANA gene 148703526 148703832 307.0 - 0 ENSG00000225176.2 processed_pseudogene ATP5MGP4 1 OTTHUMG00000161453.1 pseudo_consens +47957 chr4 HAVANA gene 148819351 148819956 606.0 - 0 ENSG00000279016.1 TEC AC093648.1 2 OTTHUMG00000161454.1 +47958 chr4 HAVANA gene 148940941 148942378 479.0 - 0 ENSG00000249317.1 processed_transcript AC002460.1 1 OTTHUMG00000161458.1 +47959 chr4 ENSEMBL gene 148991572 148991633 62.0 - 0 ENSG00000239168.1 snRNA RNU7-197P 3 +47960 chr4 HAVANA gene 149027445 149062522 481.0 - 0 ENSG00000249752.1 lincRNA AC108156.1 2 OTTHUMG00000161392.1 +47961 chr4 HAVANA gene 149147802 149149780 476.0 - 0 ENSG00000250252.1 lincRNA LINC02430 2 OTTHUMG00000161390.1 +47962 chr4 HAVANA gene 149154295 149278123 2520.0 + 0 ENSG00000248210.1 lincRNA LINC02355 2 OTTHUMG00000161393.1 +47963 chr4 HAVANA gene 149666057 149711149 510.0 + 0 ENSG00000250905.1 lincRNA AC093893.1 2 OTTHUMG00000161396.1 +47964 chr4 HAVANA gene 149789952 149790303 352.0 + 0 ENSG00000251482.1 processed_pseudogene AKIRIN2P1 1 OTTHUMG00000161391.1 pseudo_consens +47965 chr4 HAVANA gene 149351903 149896233 2692.0 - 0 ENSG00000234828.8 protein_coding IQCM 2 OTTHUMG00000161394.4 +47966 chr4 ENSEMBL gene 149907560 149907675 116.0 + 0 ENSG00000202331.1 rRNA_pseudogene RNA5SP167 3 +47967 chr4 ENSEMBL gene 149934376 149934483 108.0 + 0 ENSG00000207121.1 snRNA RNU6-1230P 3 +47968 chr4 HAVANA gene 149956208 149958572 358.0 + 0 ENSG00000250704.1 lincRNA AC105343.1 2 OTTHUMG00000161395.1 +47969 chr4 ENSEMBL gene 150209706 150209768 63.0 + 0 ENSG00000238721.1 snRNA RNU7-194P 3 +47970 chr4 HAVANA gene 150078274 150257457 4606.0 + 0 ENSG00000170390.15 protein_coding DCLK2 2 OTTHUMG00000161444.4 ncRNA_host +47971 chr4 HAVANA gene 150422645 150423642 998.0 - 0 ENSG00000248521.1 processed_pseudogene AC092612.1 1 OTTHUMG00000161450.1 pseudo_consens,overlapping_locus +47972 chr4 HAVANA gene 150579089 150581545 2209.0 + 0 ENSG00000249690.1 antisense AC110813.1 2 OTTHUMG00000161447.1 +47973 chr4 HAVANA gene 150581922 150584693 2772.0 + 0 ENSG00000181541.5 protein_coding MAB21L2 2 OTTHUMG00000161442.1 +47974 chr4 HAVANA gene 150720981 150721478 498.0 + 0 ENSG00000183432.6 processed_pseudogene ZBTB8OSP1 1 OTTHUMG00000161446.1 pseudo_consens +47975 chr4 ENSEMBL gene 150970671 150970782 112.0 - 0 ENSG00000252451.1 rRNA_pseudogene RNA5SP168 3 +47976 chr4 HAVANA gene 150264531 151015727 14929.0 - 0 ENSG00000198589.11 protein_coding LRBA 1 OTTHUMG00000161443.3 overlapping_locus +47977 chr4 HAVANA gene 151027090 151027617 528.0 + 0 ENSG00000235606.3 processed_pseudogene AK4P6 1 OTTHUMG00000161449.1 pseudo_consens +47978 chr4 ENSEMBL gene 151102057 151102128 72.0 + 0 ENSG00000201264.1 snoRNA SNORD73B 3 +47979 chr4 ENSEMBL gene 151103827 151103891 65.0 + 0 ENSG00000208797.1 snoRNA SNORD73A 3 +47980 chr4 HAVANA gene 151099573 151104652 2341.0 + 0 ENSG00000145425.9 protein_coding RPS3A 1 OTTHUMG00000161445.3 ncRNA_host +47981 chr4 HAVANA gene 151139991 151141103 1113.0 + 0 ENSG00000270681.1 antisense AC095055.1 2 OTTHUMG00000161448.1 +47982 chr4 HAVANA gene 151259503 151262849 486.0 + 0 ENSG00000249012.2 unprocessed_pseudogene AC104819.1 1 OTTHUMG00000161677.1 +47983 chr4 HAVANA gene 151279030 151279192 163.0 - 0 ENSG00000250350.1 unprocessed_pseudogene AC104819.2 2 OTTHUMG00000161669.1 overlapping_locus +47984 chr4 HAVANA gene 151277171 151291453 989.0 + 0 ENSG00000189099.11 protein_coding PRSS48 2 OTTHUMG00000161673.6 +47985 chr4 ENSEMBL gene 151300518 151300613 96.0 + 0 ENSG00000252544.1 snRNA RNU6-1282P 3 +47986 chr4 HAVANA gene 151102751 151325632 7789.0 - 0 ENSG00000109686.17 protein_coding SH3D19 2 OTTHUMG00000154051.7 overlapping_locus +47987 chr4 HAVANA gene 151333775 151353224 540.0 - 0 ENSG00000270265.1 lincRNA AC104819.3 2 OTTHUMG00000185256.1 +47988 chr4 HAVANA gene 151407551 151408835 358.0 - 0 ENSG00000251611.1 lincRNA FAM160A1-DT 1 OTTHUMG00000161670.1 +47989 chr4 ENSEMBL gene 151576766 151576916 151.0 + 0 ENSG00000253019.1 misc_RNA RN7SKP35 3 +47990 chr4 HAVANA gene 151409216 151663632 4932.0 + 0 ENSG00000164142.15 protein_coding FAM160A1 2 OTTHUMG00000161675.3 ncRNA_host +47991 chr4 HAVANA gene 151667224 151670502 304.0 + 0 ENSG00000251603.1 antisense AC092611.2 2 OTTHUMG00000161674.1 overlapping_locus +47992 chr4 HAVANA gene 151669786 151670503 718.0 + 0 ENSG00000278978.1 TEC AC092611.3 2 OTTHUMG00000161676.1 overlapping_locus +47993 chr4 HAVANA gene 151674483 151677893 2565.0 + 0 ENSG00000251455.1 antisense AC092611.1 2 OTTHUMG00000161671.1 +47994 chr4 HAVANA gene 151670504 151761023 11757.0 - 0 ENSG00000059691.11 protein_coding GATB 1 OTTHUMG00000161672.1 +47995 chr4 HAVANA gene 151799500 151801348 764.0 + 0 ENSG00000249184.1 lincRNA AC107074.1 1 OTTHUMG00000161740.1 +47996 chr4 HAVANA gene 151887543 151891263 406.0 - 0 ENSG00000249708.1 lincRNA AC112242.1 1 OTTHUMG00000161739.1 +47997 chr4 HAVANA gene 151904932 151928648 579.0 - 0 ENSG00000249818.1 lincRNA AC097375.2 1 OTTHUMG00000161729.1 +47998 chr4 HAVANA gene 151919468 151943933 488.0 + 0 ENSG00000248991.1 lincRNA AC097375.1 2 OTTHUMG00000161726.1 +47999 chr4 HAVANA gene 151955991 151969381 2997.0 + 0 ENSG00000251249.1 processed_transcript AC097375.3 2 OTTHUMG00000161725.3 +48000 chr4 ENSEMBL gene 151971497 151971613 117.0 - 0 ENSG00000253077.1 rRNA_pseudogene RNA5SP169 3 +48001 chr4 HAVANA gene 152100754 152104720 2011.0 + 0 ENSG00000245954.6 lincRNA LINC02273 2 OTTHUMG00000161715.2 +48002 chr4 HAVANA gene 152146385 152178573 552.0 - 0 ENSG00000250706.1 lincRNA AC079340.1 2 OTTHUMG00000161723.1 +48003 chr4 HAVANA gene 152207421 152225870 787.0 - 0 ENSG00000251377.1 lincRNA AC079340.2 1 OTTHUMG00000161724.1 +48004 chr4 ENSEMBL gene 152264150 152264445 296.0 - 0 ENSG00000244544.2 misc_RNA RN7SL446P 3 +48005 chr4 HAVANA gene 152308283 152309983 410.0 - 0 ENSG00000270302.1 lincRNA AC080078.1 2 OTTHUMG00000185254.1 +48006 chr4 HAVANA gene 152317902 152318364 463.0 - 0 ENSG00000270883.1 lincRNA AC080078.2 2 OTTHUMG00000185259.1 +48007 chr4 HAVANA gene 152337655 152338098 372.0 + 0 ENSG00000270751.1 antisense FBXW7-AS1 2 OTTHUMG00000185247.1 +48008 chr4 ENSEMBL gene 152489327 152489416 90.0 - 0 ENSG00000264678.1 miRNA MIR3140 3 +48009 chr4 HAVANA gene 152320544 152536063 11095.0 - 0 ENSG00000109670.14 protein_coding FBXW7 2 OTTHUMG00000185246.9 ncRNA_host +48010 chr4 ENSEMBL gene 152536428 152536516 89.0 + 0 ENSG00000283792.1 miRNA MIR4453 3 +48011 chr4 HAVANA gene 152536264 152539263 3000.0 + 0 ENSG00000268471.6 bidirectional_promoter_lncRNA MIR4453HG 2 OTTHUMG00000161466.1 ncRNA_host +48012 chr4 HAVANA gene 152551277 152552364 777.0 - 0 ENSG00000243417.1 processed_pseudogene AC023424.2 1 OTTHUMG00000157584.1 pseudo_consens +48013 chr4 HAVANA gene 152613875 152614333 459.0 - 0 ENSG00000240669.1 processed_pseudogene AC023424.1 1 OTTHUMG00000157586.1 pseudo_consens +48014 chr4 HAVANA gene 152666368 152670107 2371.0 + 0 ENSG00000248571.1 antisense AC106882.1 2 OTTHUMG00000161462.1 +48015 chr4 HAVANA gene 152618632 152680165 11587.0 - 0 ENSG00000170006.11 protein_coding TMEM154 2 OTTHUMG00000161463.1 +48016 chr4 HAVANA gene 152769354 152779764 2472.0 - 0 ENSG00000169989.2 protein_coding TIGD4 2 OTTHUMG00000161464.1 +48017 chr4 HAVANA gene 152796063 152796831 769.0 - 0 ENSG00000250980.1 processed_pseudogene AC113155.1 1 OTTHUMG00000161467.1 pseudo_consens +48018 chr4 HAVANA gene 152779937 152918463 4269.0 + 0 ENSG00000164144.15 protein_coding ARFIP1 2 OTTHUMG00000161468.1 +48019 chr4 HAVANA gene 152927446 152928207 762.0 + 0 ENSG00000231841.1 processed_pseudogene FAM192BP 1 OTTHUMG00000161465.1 pseudo_consens +48020 chr4 HAVANA gene 152936352 152979696 6593.0 + 0 ENSG00000137460.8 protein_coding FHDC1 2 OTTHUMG00000161452.3 +48021 chr4 HAVANA gene 153034211 153091165 562.0 + 0 ENSG00000249022.1 lincRNA AC093599.1 2 OTTHUMG00000161522.1 +48022 chr4 ENSEMBL gene 153265662 153265755 94.0 - 0 ENSG00000252030.1 snRNA RNU6-1196P 3 +48023 chr4 ENSEMBL gene 153266909 153267010 102.0 - 0 ENSG00000201786.1 misc_RNA RF00019 3 +48024 chr4 HAVANA gene 153307792 153308717 926.0 - 0 ENSG00000213406.3 processed_pseudogene ANXA2P1 1 OTTHUMG00000161554.1 pseudo_consens +48025 chr4 HAVANA gene 153152342 153339320 9425.0 + 0 ENSG00000109654.14 protein_coding TRIM2 1 OTTHUMG00000155991.6 +48026 chr4 ENSEMBL gene 153381729 153382015 287.0 - 0 ENSG00000243883.3 misc_RNA RN7SL419P 3 +48027 chr4 HAVANA gene 153344649 153415118 1511.0 + 0 ENSG00000121211.7 protein_coding MND1 1 OTTHUMG00000161523.5 +48028 chr4 HAVANA gene 153466346 153636711 6393.0 + 0 ENSG00000121210.15 protein_coding TMEM131L 2 OTTHUMG00000153244.5 +48029 chr4 HAVANA gene 153658572 153659653 1082.0 + 0 ENSG00000248208.1 processed_pseudogene WDR45P1 1 OTTHUMG00000161524.1 pseudo_consens,overlapping_locus +48030 chr4 HAVANA gene 153640168 153681180 3277.0 + 0 ENSG00000250771.2 transcribed_unprocessed_pseudogene AC106865.1 2 OTTHUMG00000161526.2 overlapping_locus +48031 chr4 HAVANA gene 153684070 153705702 5217.0 + 0 ENSG00000137462.7 protein_coding TLR2 2 OTTHUMG00000161525.3 +48032 chr4 HAVANA gene 153720327 153727722 521.0 + 0 ENSG00000249309.1 antisense AC020703.1 2 OTTHUMG00000161558.1 +48033 chr4 HAVANA gene 153710125 153760235 4390.0 - 0 ENSG00000145428.14 protein_coding RNF175 2 OTTHUMG00000161557.10 +48034 chr4 HAVANA gene 153780592 153789120 2032.0 - 0 ENSG00000145423.4 protein_coding SFRP2 2 OTTHUMG00000161559.2 +48035 chr4 HAVANA gene 154235980 154237598 1619.0 + 0 ENSG00000278981.1 antisense AC079298.1 2 OTTHUMG00000189144.1 +48036 chr4 HAVANA gene 154261735 154262193 459.0 + 0 ENSG00000280005.1 antisense AC079298.2 2 OTTHUMG00000189145.1 +48037 chr4 HAVANA gene 154142122 154298819 1376.0 + 0 ENSG00000280241.3 antisense AC079298.3 2 OTTHUMG00000189143.1 +48038 chr4 HAVANA gene 154373886 154374347 462.0 + 0 ENSG00000249200.1 processed_pseudogene AC110775.1 1 OTTHUMG00000161555.1 pseudo_consens +48039 chr4 HAVANA gene 154231742 154495570 20429.0 - 0 ENSG00000197410.13 protein_coding DCHS2 2 OTTHUMG00000161556.6 +48040 chr4 HAVANA gene 154523487 154524807 1022.0 + 0 ENSG00000250609.1 processed_pseudogene AC110753.1 1 OTTHUMG00000161544.1 pseudo_consens +48041 chr4 ENSEMBL gene 154543933 154544037 105.0 - 0 ENSG00000200350.1 snRNA RNU6-1285P 3 +48042 chr4 HAVANA gene 154535006 154550435 5049.0 - 0 ENSG00000171566.11 protein_coding PLRG1 1 OTTHUMG00000161411.3 ncRNA_host +48043 chr4 HAVANA gene 154555208 154555985 778.0 + 0 ENSG00000248611.1 processed_pseudogene AC107385.1 1 OTTHUMG00000161541.1 pseudo_consens +48044 chr4 HAVANA gene 154562956 154571086 2708.0 + 0 ENSG00000171564.11 protein_coding FGB 1 OTTHUMG00000150331.3 +48045 chr4 HAVANA gene 154583126 154590766 3956.0 - 0 ENSG00000171560.14 protein_coding FGA 2 OTTHUMG00000150330.2 +48046 chr4 HAVANA gene 154604134 154612967 3600.0 - 0 ENSG00000171557.16 protein_coding FGG 2 OTTHUMG00000150329.9 +48047 chr4 HAVANA gene 154724586 154724880 295.0 + 0 ENSG00000249074.1 processed_pseudogene NDUFB2P1 1 OTTHUMG00000161419.1 pseudo_consens,overlapping_locus +48048 chr4 HAVANA gene 154626945 154753118 7562.0 + 0 ENSG00000121207.11 protein_coding LRAT 2 OTTHUMG00000161418.3 overlapping_locus +48049 chr4 HAVANA gene 154770568 154770916 349.0 + 0 ENSG00000249692.1 processed_pseudogene AC009567.2 1 OTTHUMG00000161542.1 pseudo_consens +48050 chr4 HAVANA gene 154754756 154781873 525.0 - 0 ENSG00000249041.1 antisense AC009567.1 2 OTTHUMG00000161545.1 +48051 chr4 ENSEMBL gene 154787118 154787278 161.0 + 0 ENSG00000222582.1 snRNA RNU2-66P 3 +48052 chr4 ENSEMBL gene 154790291 154790484 194.0 + 0 ENSG00000252604.1 snRNA RNU2-44P 3 +48053 chr4 HAVANA gene 154781213 154828813 4027.0 + 0 ENSG00000151962.7 protein_coding RBM46 1 OTTHUMG00000161543.3 ncRNA_host +48054 chr4 HAVANA gene 155206529 155209027 1634.0 - 0 ENSG00000250538.5 antisense AC104407.1 2 OTTHUMG00000161487.1 +48055 chr4 HAVANA gene 155208629 155217078 3628.0 + 0 ENSG00000185149.5 protein_coding NPY2R 2 OTTHUMG00000161485.1 +48056 chr4 HAVANA gene 155286162 155287136 370.0 - 0 ENSG00000249924.2 lincRNA AC097467.1 1 OTTHUMG00000161483.1 +48057 chr4 HAVANA gene 155342658 155376970 8857.0 - 0 ENSG00000164114.18 protein_coding MAP9 2 OTTHUMG00000133628.6 +48058 chr4 HAVANA gene 155381042 155381239 198.0 - 0 ENSG00000250205.1 processed_pseudogene YWHAEP4 2 OTTHUMG00000161482.1 +48059 chr4 HAVANA gene 155173716 155381694 5379.0 + 0 ENSG00000250910.7 antisense AC097467.3 2 OTTHUMG00000150212.6 +48060 chr4 HAVANA gene 155383107 155384102 346.0 - 0 ENSG00000250398.1 processed_pseudogene AC097467.2 2 OTTHUMG00000161484.1 +48061 chr4 HAVANA gene 155385352 155385492 141.0 + 0 ENSG00000271606.1 unprocessed_pseudogene AC097467.4 1 OTTHUMG00000184999.1 pseudo_consens +48062 chr4 HAVANA gene 155451617 155452405 789.0 - 0 ENSG00000249247.1 unprocessed_pseudogene MTCYBP17 2 OTTHUMG00000161820.1 +48063 chr4 HAVANA gene 155452526 155453044 519.0 + 0 ENSG00000249770.1 unprocessed_pseudogene MTND6P17 2 OTTHUMG00000161806.1 +48064 chr4 HAVANA gene 155453049 155454803 1755.0 - 0 ENSG00000248748.1 unprocessed_pseudogene MTND5P9 2 OTTHUMG00000161699.2 +48065 chr4 HAVANA gene 155455050 155456411 1362.0 - 0 ENSG00000248548.1 unprocessed_pseudogene MTND4P8 2 OTTHUMG00000161821.1 +48066 chr4 HAVANA gene 155456638 155456981 126.0 - 0 ENSG00000249127.1 unprocessed_pseudogene MTND3P3 2 OTTHUMG00000161926.1 +48067 chr4 HAVANA gene 155457180 155457960 781.0 - 0 ENSG00000249698.1 unprocessed_pseudogene MTCO3P9 2 OTTHUMG00000161819.1 +48068 chr4 HAVANA gene 155457961 155458640 680.0 - 0 ENSG00000248420.1 unprocessed_pseudogene MTATP6P9 2 OTTHUMG00000161818.1 +48069 chr4 HAVANA gene 155458870 155459563 694.0 - 0 ENSG00000249386.1 unprocessed_pseudogene MTCO2P9 2 OTTHUMG00000161814.1 +48070 chr4 HAVANA gene 155459704 155461237 1534.0 - 0 ENSG00000251223.1 unprocessed_pseudogene MTCO1P9 2 OTTHUMG00000161811.1 +48071 chr4 HAVANA gene 155461633 155462663 1031.0 - 0 ENSG00000248907.1 unprocessed_pseudogene MTND2P33 2 OTTHUMG00000161812.1 +48072 chr4 HAVANA gene 155462873 155463823 951.0 - 0 ENSG00000251407.1 unprocessed_pseudogene MTND1P22 2 OTTHUMG00000161807.1 +48073 chr4 HAVANA gene 155515727 155517459 519.0 + 0 ENSG00000251244.1 lincRNA AC107208.1 1 OTTHUMG00000161799.1 +48074 chr4 HAVANA gene 155666711 155732349 5766.0 + 0 ENSG00000164116.16 protein_coding GUCY1A1 2 OTTHUMG00000161700.3 +48075 chr4 HAVANA gene 155734448 155737062 2615.0 + 0 ENSG00000260244.1 sense_overlapping AC104083.1 2 OTTHUMG00000175885.1 +48076 chr4 HAVANA gene 155758992 155807591 3724.0 + 0 ENSG00000061918.12 protein_coding GUCY1B1 1 OTTHUMG00000161698.18 +48077 chr4 HAVANA gene 155829729 155866273 1692.0 - 0 ENSG00000256394.2 protein_coding ASIC5 2 OTTHUMG00000161941.1 +48078 chr4 HAVANA gene 155854738 155920406 5264.0 + 0 ENSG00000151790.8 protein_coding TDO2 2 OTTHUMG00000161838.5 +48079 chr4 HAVANA gene 155924118 155953917 2954.0 - 0 ENSG00000256043.2 protein_coding CTSO 2 OTTHUMG00000161942.3 +48080 chr4 HAVANA gene 156006478 156006988 511.0 + 0 ENSG00000249013.1 processed_pseudogene FTH1P21 1 OTTHUMG00000161779.1 pseudo_consens +48081 chr4 HAVANA gene 156585979 156590039 993.0 + 0 ENSG00000251511.1 lincRNA AC096736.3 2 OTTHUMG00000161776.1 +48082 chr4 HAVANA gene 156634494 156642454 607.0 - 0 ENSG00000251283.1 lincRNA LINC02272 2 OTTHUMG00000161775.1 +48083 chr4 HAVANA gene 156642580 156643569 175.0 + 0 ENSG00000249479.1 antisense AC096736.2 2 OTTHUMG00000161777.1 +48084 chr4 HAVANA gene 156686664 156692636 947.0 + 0 ENSG00000248912.1 lincRNA AC096736.1 2 OTTHUMG00000161780.1 +48085 chr4 HAVANA gene 156841359 156842236 267.0 + 0 ENSG00000248629.1 antisense AC092608.1 2 OTTHUMG00000161802.1 +48086 chr4 HAVANA gene 156876435 156876820 386.0 + 0 ENSG00000280284.1 TEC AC092608.3 2 OTTHUMG00000161804.1 +48087 chr4 HAVANA gene 156886645 156886862 218.0 + 0 ENSG00000278880.1 TEC AC092608.2 2 OTTHUMG00000161801.1 +48088 chr4 HAVANA gene 156760454 156971394 5593.0 - 0 ENSG00000145431.10 protein_coding PDGFC 2 OTTHUMG00000161803.4 +48089 chr4 HAVANA gene 156972631 156972956 326.0 + 0 ENSG00000250622.1 processed_pseudogene AC093325.1 1 OTTHUMG00000161805.1 pseudo_consens +48090 chr4 ENSEMBL gene 156986372 156986693 322.0 - 0 ENSG00000252350.1 ribozyme RPPH1-3P 3 +48091 chr4 ENSEMBL gene 157064557 157064663 107.0 + 0 ENSG00000252524.1 misc_RNA RF00019 3 +48092 chr4 HAVANA gene 157076057 157172090 3459.0 + 0 ENSG00000109738.10 protein_coding GLRB 2 OTTHUMG00000161954.1 +48093 chr4 ENSEMBL gene 157201562 157201668 107.0 - 0 ENSG00000199859.1 snRNA RNU6-582P 3 +48094 chr4 HAVANA gene 157204462 157204855 394.0 - 0 ENSG00000249819.1 processed_pseudogene AC112240.1 1 OTTHUMG00000161953.1 pseudo_consens +48095 chr4 HAVANA gene 157204182 157366075 8941.0 + 0 ENSG00000120251.19 protein_coding GRIA2 2 OTTHUMG00000133836.4 +48096 chr4 HAVANA gene 157572490 157576154 1493.0 + 0 ENSG00000234111.6 lincRNA LINC02433 2 OTTHUMG00000161533.1 +48097 chr4 HAVANA gene 157637687 157667044 812.0 + 0 ENSG00000249275.1 lincRNA AC093817.1 2 OTTHUMG00000161532.1 +48098 chr4 ENSEMBL gene 157768013 157768113 101.0 - 0 ENSG00000200521.1 misc_RNA RF00019 3 +48099 chr4 HAVANA gene 157815010 157815480 471.0 + 0 ENSG00000249627.1 processed_pseudogene AC017037.1 1 OTTHUMG00000161534.1 pseudo_consens +48100 chr4 HAVANA gene 157818101 157818572 472.0 - 0 ENSG00000279703.1 TEC AC017037.3 2 OTTHUMG00000161535.1 +48101 chr4 HAVANA gene 157945817 157946642 826.0 - 0 ENSG00000279994.1 TEC AC017037.4 2 OTTHUMG00000161531.1 +48102 chr4 HAVANA gene 157968412 157969615 890.0 - 0 ENSG00000250475.1 unprocessed_pseudogene AC017037.2 1 OTTHUMG00000161529.1 pseudo_consens +48103 chr4 HAVANA gene 158109500 158110153 654.0 - 0 ENSG00000279139.1 TEC AC098679.3 2 OTTHUMG00000161536.1 +48104 chr4 HAVANA gene 158111361 158111931 571.0 - 0 ENSG00000280140.1 TEC AC098679.4 2 OTTHUMG00000161530.1 +48105 chr4 HAVANA gene 158124474 158173318 7880.0 - 0 ENSG00000164125.15 protein_coding FAM198B 1 OTTHUMG00000161537.4 +48106 chr4 HAVANA gene 158182825 158183393 569.0 + 0 ENSG00000251073.1 processed_pseudogene NUDT19P5 2 OTTHUMG00000162011.1 overlapping_locus +48107 chr4 HAVANA gene 158199105 158200442 365.0 - 0 ENSG00000250604.1 antisense AC098679.1 2 OTTHUMG00000162012.1 +48108 chr4 HAVANA gene 158170752 158202877 5639.0 + 0 ENSG00000248429.5 antisense FAM198B-AS1 2 OTTHUMG00000161654.6 overlapping_locus +48109 chr4 HAVANA gene 158201604 158255411 9243.0 + 0 ENSG00000164124.10 protein_coding TMEM144 2 OTTHUMG00000162013.7 overlapping_locus +48110 chr4 HAVANA gene 158270378 158278676 3616.0 + 0 ENSG00000251429.1 transcribed_processed_pseudogene AC098679.2 1 OTTHUMG00000161655.1 pseudo_consens +48111 chr4 ENSEMBL gene 158395394 158395534 141.0 + 0 ENSG00000199634.1 snRNA RNU4-79P 3 +48112 chr4 HAVANA gene 158469586 158470702 652.0 + 0 ENSG00000248387.1 processed_pseudogene AC121161.1 1 OTTHUMG00000161521.1 pseudo_consens,overlapping_locus +48113 chr4 HAVANA gene 158490766 158509908 659.0 - 0 ENSG00000249901.1 antisense AC121161.2 2 OTTHUMG00000161685.1 +48114 chr4 HAVANA gene 158315311 158653372 5684.0 + 0 ENSG00000171509.15 protein_coding RXFP1 1 OTTHUMG00000149973.5 ncRNA_host,overlapping_locus +48115 chr4 HAVANA gene 158666679 158672255 3730.0 - 0 ENSG00000205208.4 protein_coding C4orf46 1 OTTHUMG00000161919.2 +48116 chr4 ENSEMBL gene 158700691 158700909 219.0 + 0 ENSG00000271817.2 snoRNA RF00012 3 +48117 chr4 HAVANA gene 158672125 158709623 4493.0 + 0 ENSG00000171503.11 protein_coding ETFDH 1 OTTHUMG00000161684.6 ncRNA_host +48118 chr4 HAVANA gene 158709134 158723396 2509.0 - 0 ENSG00000171497.4 protein_coding PPID 2 OTTHUMG00000161927.3 +48119 chr4 ENSEMBL gene 158794590 158794696 107.0 - 0 ENSG00000206703.1 snRNA RNU6-128P 3 +48120 chr4 HAVANA gene 158769138 158908049 10868.0 + 0 ENSG00000052795.12 protein_coding FNIP2 2 OTTHUMG00000161983.4 +48121 chr4 ENSEMBL gene 158909373 158909450 78.0 - 0 ENSG00000274535.1 snoRNA RF00157 3 +48122 chr4 HAVANA gene 159007119 159007835 717.0 + 0 ENSG00000248988.1 processed_pseudogene AC093700.1 1 OTTHUMG00000161987.1 pseudo_consens +48123 chr4 HAVANA gene 159026139 159026527 389.0 + 0 ENSG00000249367.1 processed_pseudogene FABP5P12 1 OTTHUMG00000161989.1 pseudo_consens +48124 chr4 HAVANA gene 158893134 159038760 1438.0 - 0 ENSG00000164123.6 protein_coding C4orf45 2 OTTHUMG00000161988.2 ncRNA_host +48125 chr4 ENSEMBL gene 159064297 159064398 102.0 - 0 ENSG00000206978.1 misc_RNA RF00019 3 +48126 chr4 ENSEMBL gene 159128805 159128891 87.0 + 0 ENSG00000283379.1 miRNA MIR3688-2 3 +48127 chr4 ENSEMBL gene 159128802 159128894 93.0 - 0 ENSG00000264105.1 miRNA MIR3688-1 3 +48128 chr4 HAVANA gene 159103013 159360174 13275.0 + 0 ENSG00000109756.9 protein_coding RAPGEF2 1 OTTHUMG00000161451.6 ncRNA_host +48129 chr4 HAVANA gene 159375099 159375322 224.0 - 0 ENSG00000248552.1 processed_pseudogene AC074344.1 2 OTTHUMG00000161435.1 +48130 chr4 HAVANA gene 159398533 159401246 565.0 + 0 ENSG00000250180.1 lincRNA AC074344.2 1 OTTHUMG00000161436.1 +48131 chr4 HAVANA gene 159666503 159777784 358.0 - 0 ENSG00000250488.1 lincRNA LINC02233 2 OTTHUMG00000161434.1 +48132 chr4 HAVANA gene 160521829 160522311 483.0 - 0 ENSG00000250997.1 processed_pseudogene AC093853.1 1 OTTHUMG00000161423.1 pseudo_consens +48133 chr4 HAVANA gene 160539254 160586817 1417.0 + 0 ENSG00000249425.1 lincRNA LINC02477 2 OTTHUMG00000161427.1 +48134 chr4 HAVANA gene 160818422 160818869 448.0 + 0 ENSG00000242635.2 processed_pseudogene RPS14P7 1 OTTHUMG00000157592.2 pseudo_consens +48135 chr4 HAVANA gene 161378953 161388417 2840.0 + 0 ENSG00000249568.1 antisense AC104793.1 2 OTTHUMG00000161417.1 +48136 chr4 HAVANA gene 162022733 162047567 1105.0 + 0 ENSG00000249419.1 antisense AC023136.1 2 OTTHUMG00000161416.1 +48137 chr4 HAVANA gene 161383897 162164035 5355.0 - 0 ENSG00000168843.13 protein_coding FSTL5 2 OTTHUMG00000161397.6 +48138 chr4 HAVANA gene 162322188 162323907 1025.0 + 0 ENSG00000251253.1 processed_pseudogene MTHFD2P4 1 OTTHUMG00000161389.2 pseudo_consens +48139 chr4 HAVANA gene 162521682 162522041 336.0 + 0 ENSG00000248396.1 processed_pseudogene TOMM22P4 1 OTTHUMG00000161382.1 pseudo_consens +48140 chr4 HAVANA gene 162740668 162742048 628.0 + 0 ENSG00000248431.1 lincRNA AC005150.1 2 OTTHUMG00000161384.1 +48141 chr4 HAVANA gene 162984795 162985416 622.0 + 0 ENSG00000251123.1 processed_pseudogene AC084752.1 1 OTTHUMG00000161351.1 pseudo_consens +48142 chr4 ENSEMBL gene 163093574 163093628 55.0 - 0 ENSG00000283468.1 miRNA MIR4454 3 +48143 chr4 HAVANA gene 163108785 163119965 777.0 + 0 ENSG00000250027.1 antisense AC022272.1 1 OTTHUMG00000161378.1 +48144 chr4 HAVANA gene 163110073 163166921 4808.0 - 0 ENSG00000145414.8 protein_coding NAF1 2 OTTHUMG00000161370.3 +48145 chr4 HAVANA gene 163265575 163266583 1009.0 - 0 ENSG00000250547.1 processed_pseudogene AC079238.1 1 OTTHUMG00000161352.1 pseudo_consens +48146 chr4 HAVANA gene 163323961 163344832 4180.0 - 0 ENSG00000164128.6 protein_coding NPY1R 2 OTTHUMG00000161371.3 +48147 chr4 HAVANA gene 163343939 163351934 3291.0 + 0 ENSG00000164129.11 protein_coding NPY5R 2 OTTHUMG00000161353.2 +48148 chr4 HAVANA gene 163382179 163382516 338.0 + 0 ENSG00000227283.1 processed_pseudogene RPL35AP12 1 OTTHUMG00000155271.1 pseudo_consens +48149 chr4 HAVANA gene 163471093 163473746 2654.0 - 0 ENSG00000151005.4 protein_coding TKTL2 2 OTTHUMG00000161527.1 retrogene +48150 chr4 HAVANA gene 163494442 163520539 3513.0 + 0 ENSG00000198498.9 protein_coding TMA16 1 OTTHUMG00000161528.1 +48151 chr4 HAVANA gene 163529771 163530697 927.0 + 0 ENSG00000273449.1 lincRNA AC093788.1 2 OTTHUMG00000186411.1 +48152 chr4 ENSEMBL gene 163828800 163829113 314.0 - 0 ENSG00000253001.1 misc_RNA RN7SKP105 3 +48153 chr4 HAVANA gene 163932526 163933182 657.0 + 0 ENSG00000177803.7 processed_pseudogene AC112247.1 1 OTTHUMG00000161473.1 pseudo_consens +48154 chr4 HAVANA gene 164188311 164190367 2057.0 + 0 ENSG00000250746.1 processed_pseudogene AC105250.1 1 OTTHUMG00000161203.1 pseudo_consens +48155 chr4 HAVANA gene 164197007 164197711 705.0 - 0 ENSG00000248546.3 processed_pseudogene ANP32C 1 OTTHUMG00000161205.1 pseudo_consens,overlapping_locus +48156 chr4 HAVANA gene 163524298 164384050 10421.0 - 0 ENSG00000145416.13 protein_coding MARCH1 2 OTTHUMG00000161204.4 ncRNA_host,overlapping_locus +48157 chr4 HAVANA gene 164597719 164597976 258.0 + 0 ENSG00000251162.1 processed_pseudogene AC074198.2 1 OTTHUMG00000161206.1 pseudo_consens +48158 chr4 ENSEMBL gene 164620732 164620837 106.0 + 0 ENSG00000223037.1 snRNA RNU6-284P 3 +48159 chr4 HAVANA gene 164725310 164726706 1397.0 + 0 ENSG00000248162.1 processed_pseudogene AC074198.1 1 OTTHUMG00000161267.1 pseudo_consens +48160 chr4 ENSEMBL gene 164787290 164787396 107.0 + 0 ENSG00000201050.1 snRNA RNU6-668P 3 +48161 chr4 HAVANA gene 164754064 164803795 3190.0 + 0 ENSG00000248771.5 protein_coding SMIM31 2 OTTHUMG00000161261.3 ncRNA_host +48162 chr4 HAVANA gene 164877004 164898965 3089.0 + 0 ENSG00000248329.5 protein_coding APELA 2 OTTHUMG00000161255.3 +48163 chr4 HAVANA gene 164915565 164916983 1419.0 + 0 ENSG00000250227.1 processed_pseudogene TRIM60P14 1 OTTHUMG00000161253.1 pseudo_consens +48164 chr4 HAVANA gene 164920618 164921063 446.0 - 0 ENSG00000244146.1 processed_pseudogene AC106872.3 1 OTTHUMG00000157596.1 pseudo_consens +48165 chr4 HAVANA gene 164929494 164929951 458.0 - 0 ENSG00000221891.2 processed_pseudogene FAM218BP 2 OTTHUMG00000161269.1 +48166 chr4 HAVANA gene 164920894 164931047 3700.0 + 0 ENSG00000285563.1 lincRNA AC106872.13 2 OTTHUMG00000193374.1 +48167 chr4 HAVANA gene 164933086 164933506 421.0 - 0 ENSG00000270960.1 processed_pseudogene AC106872.11 1 OTTHUMG00000184959.1 pseudo_consens +48168 chr4 HAVANA gene 164938322 164939990 1346.0 - 0 ENSG00000248645.1 unprocessed_pseudogene AC106872.6 1 OTTHUMG00000161260.1 pseudo_consens +48169 chr4 HAVANA gene 164943290 164943937 648.0 + 0 ENSG00000121089.4 processed_pseudogene NACA3P 1 OTTHUMG00000161263.1 pseudo_consens +48170 chr4 HAVANA gene 164948079 164949438 1360.0 + 0 ENSG00000236941.6 processed_pseudogene AC106872.1 1 OTTHUMG00000161264.1 pseudo_consens +48171 chr4 HAVANA gene 164956948 164959122 2175.0 + 0 ENSG00000250486.4 protein_coding FAM218A 2 OTTHUMG00000161252.1 +48172 chr4 HAVANA gene 164968587 164970002 1416.0 - 0 ENSG00000248632.1 processed_pseudogene AC106872.5 1 OTTHUMG00000161270.1 pseudo_consens,overlapping_locus +48173 chr4 HAVANA gene 164954446 164977668 1582.0 - 0 ENSG00000183439.7 protein_coding TRIM61 2 OTTHUMG00000161266.1 overlapping_locus +48174 chr4 HAVANA gene 164987265 164987787 523.0 + 0 ENSG00000248229.1 processed_pseudogene AC106872.4 2 OTTHUMG00000161268.1 +48175 chr4 HAVANA gene 165007086 165007959 747.0 - 0 ENSG00000250887.1 lincRNA AC106872.10 2 OTTHUMG00000161256.1 +48176 chr4 HAVANA gene 165010459 165011851 1393.0 + 0 ENSG00000250712.1 processed_pseudogene AC106872.9 1 OTTHUMG00000161259.1 pseudo_consens +48177 chr4 HAVANA gene 165012366 165012845 480.0 - 0 ENSG00000240674.1 processed_pseudogene AC106872.2 1 OTTHUMG00000157594.1 pseudo_consens +48178 chr4 HAVANA gene 165016887 165017433 547.0 + 0 ENSG00000276623.1 processed_pseudogene AC106872.12 2 OTTHUMG00000187585.1 overlapping_locus +48179 chr4 HAVANA gene 165026261 165026944 684.0 - 0 ENSG00000250430.1 processed_pseudogene AC106872.8 2 OTTHUMG00000161258.1 +48180 chr4 HAVANA gene 165016458 165041744 3056.0 + 0 ENSG00000176979.13 protein_coding TRIM60 2 OTTHUMG00000161262.3 +48181 chr4 HAVANA gene 165045969 165046280 312.0 + 0 ENSG00000249617.1 processed_pseudogene AC106872.7 1 OTTHUMG00000161265.1 pseudo_consens +48182 chr4 HAVANA gene 165053864 165060554 1840.0 + 0 ENSG00000250374.4 protein_coding TRIM75P 2 OTTHUMG00000161257.3 +48183 chr4 HAVANA gene 165070608 165208549 10241.0 - 0 ENSG00000170088.13 protein_coding TMEM192 2 OTTHUMG00000161254.7 +48184 chr4 ENSEMBL gene 165252580 165252661 82.0 + 0 ENSG00000200974.1 snRNA RNU4-87P 3 +48185 chr4 HAVANA gene 165277812 165279679 1868.0 - 0 ENSG00000229894.4 protein_coding GK3P 2 OTTHUMG00000161293.2 retrogene +48186 chr4 HAVANA gene 165207618 165323156 3872.0 + 0 ENSG00000109466.13 protein_coding KLHL2 2 OTTHUMG00000161294.3 ncRNA_host +48187 chr4 HAVANA gene 165327623 165343160 2892.0 + 0 ENSG00000052802.12 protein_coding MSMO1 2 OTTHUMG00000161126.6 +48188 chr4 ENSEMBL gene 165386242 165386337 96.0 + 0 ENSG00000207559.1 miRNA MIR578 3 +48189 chr4 HAVANA gene 165404067 165406350 2284.0 - 0 ENSG00000251596.1 processed_pseudogene HADHAP1 1 OTTHUMG00000161127.1 pseudo_consens +48190 chr4 HAVANA gene 165361194 165498320 2958.0 + 0 ENSG00000109472.13 protein_coding CPE 2 OTTHUMG00000150252.3 ncRNA_host +48191 chr4 HAVANA gene 165517255 165517501 247.0 - 0 ENSG00000248287.1 processed_pseudogene SCGB1D5P 1 OTTHUMG00000161129.1 pseudo_consens +48192 chr4 HAVANA gene 165547532 165551060 3529.0 - 0 ENSG00000248327.1 processed_pseudogene NOL8P1 1 OTTHUMG00000161128.1 pseudo_consens +48193 chr4 HAVANA gene 165664350 165665671 1045.0 + 0 ENSG00000250725.2 processed_pseudogene AC080079.1 1 OTTHUMG00000161099.2 pseudo_consens +48194 chr4 HAVANA gene 165684639 165762778 2163.0 + 0 ENSG00000249500.1 lincRNA LINC01179 2 OTTHUMG00000161098.1 +48195 chr4 ENSEMBL gene 166053187 166053287 101.0 - 0 ENSG00000252959.1 rRNA_pseudogene RNA5SP170 3 +48196 chr4 HAVANA gene 165873258 166103895 7522.0 + 0 ENSG00000038295.7 protein_coding TLL1 2 OTTHUMG00000161112.3 +48197 chr4 ENSEMBL gene 166312935 166313034 100.0 - 0 ENSG00000206711.1 misc_RNA RF00019 3 +48198 chr4 HAVANA gene 166388701 166526119 934.0 - 0 ENSG00000249675.1 lincRNA AC097487.1 2 OTTHUMG00000161810.1 +48199 chr4 ENSEMBL gene 166918364 166918478 115.0 - 0 ENSG00000212373.1 rRNA_pseudogene RNA5SP171 3 +48200 chr4 HAVANA gene 166733384 167234796 4482.0 - 0 ENSG00000196104.10 protein_coding SPOCK3 2 OTTHUMG00000161190.3 +48201 chr4 HAVANA gene 167306910 167308789 589.0 - 0 ENSG00000250150.1 lincRNA AC079349.1 2 OTTHUMG00000161192.1 +48202 chr4 ENSEMBL gene 167400495 167400762 268.0 - 0 ENSG00000240772.3 misc_RNA RN7SL776P 3 +48203 chr4 HAVANA gene 167648430 167648796 367.0 + 0 ENSG00000248913.1 processed_pseudogene PHBP14 1 OTTHUMG00000161191.1 pseudo_consens +48204 chr4 ENSEMBL gene 167662986 167663302 317.0 + 0 ENSG00000222721.1 misc_RNA RN7SKP188 3 +48205 chr4 HAVANA gene 167741879 167742287 409.0 - 0 ENSG00000270336.1 processed_pseudogene AC105148.1 1 OTTHUMG00000184963.1 pseudo_consens +48206 chr4 HAVANA gene 167946674 168113331 447.0 - 0 ENSG00000248601.1 antisense AC116634.1 2 OTTHUMG00000161276.2 +48207 chr4 HAVANA gene 168092515 168187690 1812.0 + 0 ENSG00000109511.11 protein_coding ANXA10 2 OTTHUMG00000161275.2 +48208 chr4 HAVANA gene 168216293 168318807 6750.0 - 0 ENSG00000137628.16 protein_coding DDX60 2 OTTHUMG00000161350.2 +48209 chr4 ENSEMBL gene 168471409 168471539 131.0 + 0 ENSG00000207171.1 snoRNA RF00432 3 +48210 chr4 HAVANA gene 168356735 168537786 12156.0 - 0 ENSG00000181381.13 protein_coding DDX60L 1 OTTHUMG00000161412.4 +48211 chr4 HAVANA gene 168598240 168598757 449.0 - 0 ENSG00000229226.3 processed_pseudogene BTF3L4P4 1 OTTHUMG00000161472.1 pseudo_consens +48212 chr4 HAVANA gene 168647896 168648587 448.0 - 0 ENSG00000249623.1 antisense AC079858.1 2 OTTHUMG00000161279.1 +48213 chr4 ENSEMBL gene 168686608 168686716 109.0 - 0 ENSG00000206613.1 snRNA RNU6-1336P 3 +48214 chr4 HAVANA gene 168755816 168756382 567.0 + 0 ENSG00000214676.4 processed_pseudogene RPL9P16 1 OTTHUMG00000157599.1 pseudo_consens,overlapping_locus +48215 chr4 HAVANA gene 168828919 168832937 552.0 - 0 ENSG00000249609.1 antisense AC080188.1 2 OTTHUMG00000161489.1 +48216 chr4 HAVANA gene 168843988 168844735 748.0 + 0 ENSG00000279384.1 TEC AC080188.2 2 OTTHUMG00000161490.1 overlapping_locus +48217 chr4 ENSEMBL gene 168885355 168885461 107.0 + 0 ENSG00000201176.1 snRNA RNU6-853P 3 +48218 chr4 HAVANA gene 168497066 168928457 10114.0 + 0 ENSG00000129116.18 protein_coding PALLD 1 OTTHUMG00000161097.10 ncRNA_host,overlapping_locus +48219 chr4 ENSEMBL gene 169005249 169005344 96.0 + 0 ENSG00000201818.1 misc_RNA RNY4P17 3 +48220 chr4 HAVANA gene 168863770 169010275 5110.0 - 0 ENSG00000145439.11 protein_coding CBR4 2 OTTHUMG00000161025.4 +48221 chr4 HAVANA gene 169010430 169010939 183.0 + 0 ENSG00000251445.1 antisense AC021151.1 2 OTTHUMG00000161027.1 +48222 chr4 HAVANA gene 169166272 169167117 846.0 + 0 ENSG00000214671.4 processed_pseudogene RPL6P12 1 OTTHUMG00000157602.1 pseudo_consens +48223 chr4 HAVANA gene 169201794 169220349 637.0 + 0 ENSG00000251171.1 antisense AC096741.1 2 OTTHUMG00000161024.1 +48224 chr4 HAVANA gene 169094256 169271105 5624.0 - 0 ENSG00000154447.14 protein_coding SH3RF1 2 OTTHUMG00000161010.5 +48225 chr4 HAVANA gene 169392857 169612629 8308.0 - 0 ENSG00000137601.16 protein_coding NEK1 2 OTTHUMG00000160963.5 +48226 chr4 HAVANA gene 169612633 169723673 8123.0 + 0 ENSG00000109572.13 protein_coding CLCN3 1 OTTHUMG00000160973.4 +48227 chr4 HAVANA gene 169729465 169757953 1436.0 - 0 ENSG00000056050.6 protein_coding HPF1 2 OTTHUMG00000160960.1 +48228 chr4 HAVANA gene 169791221 169791702 482.0 - 0 ENSG00000229204.3 processed_pseudogene PTGES3P3 1 OTTHUMG00000160905.1 pseudo_consens +48229 chr4 HAVANA gene 169832653 169833363 711.0 + 0 ENSG00000248625.1 processed_pseudogene AC079768.1 1 OTTHUMG00000160904.2 pseudo_consens +48230 chr4 HAVANA gene 169945981 169963334 449.0 + 0 ENSG00000251200.1 antisense AC084866.2 2 OTTHUMG00000160948.1 +48231 chr4 HAVANA gene 169917761 169975902 4365.0 - 0 ENSG00000248319.1 lincRNA LINC02275 2 OTTHUMG00000160949.2 +48232 chr4 HAVANA gene 169981747 169993806 554.0 + 0 ENSG00000249955.1 antisense AC084866.1 1 OTTHUMG00000160946.1 +48233 chr4 HAVANA gene 169986597 170033031 8741.0 - 0 ENSG00000198948.11 protein_coding MFAP3L 1 OTTHUMG00000160942.9 +48234 chr4 HAVANA gene 170060222 170091699 2981.0 - 0 ENSG00000109576.13 protein_coding AADAT 1 OTTHUMG00000160912.4 +48235 chr4 HAVANA gene 170099818 170100104 287.0 + 0 ENSG00000248822.1 processed_pseudogene APOBEC3AP1 2 OTTHUMG00000160902.1 +48236 chr4 HAVANA gene 170141292 170142532 843.0 - 0 ENSG00000248739.1 processed_pseudogene AC069306.1 1 OTTHUMG00000160892.1 pseudo_consens +48237 chr4 HAVANA gene 170273919 170283079 469.0 + 0 ENSG00000250266.1 lincRNA LINC01612 1 OTTHUMG00000160893.1 +48238 chr4 HAVANA gene 170343089 170372311 429.0 + 0 ENSG00000251061.2 lincRNA LINC02512 1 OTTHUMG00000160896.2 +48239 chr4 HAVANA gene 170481695 170482195 501.0 - 0 ENSG00000250082.1 processed_pseudogene AC074255.1 1 OTTHUMG00000160891.1 pseudo_consens +48240 chr4 HAVANA gene 170581470 170605450 853.0 - 0 ENSG00000181359.5 transcribed_processed_pseudogene HSP90AA6P 1 OTTHUMG00000160882.2 pseudo_consens +48241 chr4 HAVANA gene 170742469 170743718 614.0 - 0 ENSG00000250968.1 lincRNA LINC02382 2 OTTHUMG00000160872.1 +48242 chr4 HAVANA gene 170814339 170814548 210.0 - 0 ENSG00000249943.1 processed_pseudogene AC097486.1 1 OTTHUMG00000160873.2 pseudo_consens +48243 chr4 ENSEMBL gene 170891467 170891597 131.0 + 0 ENSG00000251961.1 snRNA RNU6ATAC13P 3 +48244 chr4 HAVANA gene 171040602 171059163 3632.0 + 0 ENSG00000248872.1 lincRNA LINC02431 2 OTTHUMG00000160875.1 +48245 chr4 HAVANA gene 171113789 171114581 583.0 + 0 ENSG00000249525.1 processed_pseudogene AC034159.1 1 OTTHUMG00000160874.1 pseudo_consens +48246 chr4 HAVANA gene 171169209 171169942 734.0 - 0 ENSG00000248755.1 processed_pseudogene AC092639.1 1 OTTHUMG00000160878.1 pseudo_consens +48247 chr4 ENSEMBL gene 171186184 171186292 109.0 + 0 ENSG00000278502.1 miRNA MIR6082 3 +48248 chr4 HAVANA gene 171289475 171298267 4949.0 - 0 ENSG00000248339.1 lincRNA LINC02504 2 OTTHUMG00000161813.2 +48249 chr4 HAVANA gene 171553000 171564267 404.0 - 0 ENSG00000251176.1 lincRNA AC074254.1 2 OTTHUMG00000160879.1 +48250 chr4 HAVANA gene 171602683 171638763 553.0 - 0 ENSG00000249297.1 lincRNA LINC02174 2 OTTHUMG00000160881.3 +48251 chr4 HAVANA gene 172380028 172380487 460.0 - 0 ENSG00000248637.1 processed_pseudogene AC108064.1 1 OTTHUMG00000160806.1 pseudo_consens +48252 chr4 HAVANA gene 171812254 173041559 9242.0 + 0 ENSG00000174473.15 protein_coding GALNTL6 2 OTTHUMG00000160807.3 +48253 chr4 ENSEMBL gene 173141643 173141938 296.0 + 0 ENSG00000241652.3 misc_RNA RN7SL253P 3 +48254 chr4 HAVANA gene 173131928 173169652 3367.0 - 0 ENSG00000245213.6 antisense AC105285.1 2 OTTHUMG00000160808.1 +48255 chr4 ENSEMBL gene 173268160 173268233 74.0 + 0 ENSG00000221296.2 miRNA MIR548T 3 +48256 chr4 HAVANA gene 173168753 173323967 6865.0 + 0 ENSG00000109586.11 protein_coding GALNT7 1 OTTHUMG00000160817.3 ncRNA_host +48257 chr4 HAVANA gene 173322206 173329694 521.0 - 0 ENSG00000248774.1 antisense AC097534.1 2 OTTHUMG00000160797.1 +48258 chr4 HAVANA gene 173331695 173335125 2775.0 - 0 ENSG00000164104.11 protein_coding HMGB2 2 OTTHUMG00000160799.2 +48259 chr4 HAVANA gene 173363780 173370446 2495.0 - 0 ENSG00000272870.1 antisense AC097534.2 2 OTTHUMG00000186433.2 +48260 chr4 HAVANA gene 173369969 173377532 1320.0 + 0 ENSG00000164105.3 protein_coding SAP30 1 OTTHUMG00000160798.2 +48261 chr4 HAVANA gene 173384701 173406380 5396.0 - 0 ENSG00000164106.7 protein_coding SCRG1 2 OTTHUMG00000161249.2 +48262 chr4 HAVANA gene 173419245 173420137 893.0 - 0 ENSG00000242882.1 processed_pseudogene RPL5P11 1 OTTHUMG00000157603.1 pseudo_consens +48263 chr4 ENSEMBL gene 173446603 173446704 102.0 - 0 ENSG00000252898.1 snRNA RNU6-1096P 3 +48264 chr4 HAVANA gene 173467833 173470041 2209.0 - 0 ENSG00000261646.1 lincRNA AC093849.1 2 OTTHUMG00000176321.1 +48265 chr4 HAVANA gene 173524969 173530229 3601.0 - 0 ENSG00000164107.8 protein_coding HAND2 2 OTTHUMG00000160775.3 +48266 chr4 HAVANA gene 173615936 173616906 971.0 - 0 ENSG00000234801.3 processed_pseudogene MORF4 1 OTTHUMG00000153241.2 pseudo_consens +48267 chr4 HAVANA gene 173633728 173634371 644.0 - 0 ENSG00000213370.3 processed_pseudogene RANP6 1 OTTHUMG00000153240.2 pseudo_consens +48268 chr4 HAVANA gene 173527270 173659696 21212.0 + 0 ENSG00000237125.9 antisense HAND2-AS1 1 OTTHUMG00000160783.8 +48269 chr4 HAVANA gene 173877471 173913252 1230.0 - 0 ENSG00000250043.1 lincRNA AC106895.1 1 OTTHUMG00000160737.2 +48270 chr4 HAVANA gene 173897252 173929525 605.0 + 0 ENSG00000250708.1 lincRNA LINC02269 2 OTTHUMG00000160736.1 +48271 chr4 HAVANA gene 173924207 173990861 1993.0 - 0 ENSG00000251216.1 lincRNA AC106895.2 1 OTTHUMG00000160738.1 +48272 chr4 HAVANA gene 174135055 174154637 1144.0 - 0 ENSG00000250957.1 lincRNA AC012055.1 2 OTTHUMG00000160740.1 overlapping_locus +48273 chr4 HAVANA gene 174164441 174168913 335.0 - 0 ENSG00000251213.1 lincRNA AC012055.2 2 OTTHUMG00000160741.1 overlapping_locus +48274 chr4 HAVANA gene 174094660 174220398 1659.0 - 0 ENSG00000248174.5 lincRNA LINC02268 2 OTTHUMG00000160745.2 overlapping_locus +48275 chr4 HAVANA gene 174236658 174284264 2810.0 - 0 ENSG00000164117.13 protein_coding FBXO8 2 OTTHUMG00000160746.4 +48276 chr4 HAVANA gene 174283677 174333380 7132.0 + 0 ENSG00000164118.12 protein_coding CEP44 2 OTTHUMG00000160752.3 +48277 chr4 HAVANA gene 174354854 174376445 366.0 - 0 ENSG00000249875.1 lincRNA AC116616.1 2 OTTHUMG00000160754.1 +48278 chr4 ENSEMBL gene 174423795 174423864 70.0 + 0 ENSG00000265846.1 miRNA MIR4276 3 +48279 chr4 HAVANA gene 174490177 174523154 5529.0 - 0 ENSG00000164120.13 protein_coding HPGD 1 OTTHUMG00000160772.7 +48280 chr4 HAVANA gene 174523701 174540344 2202.0 - 0 ENSG00000250596.2 transcribed_processed_pseudogene AC096751.1 2 OTTHUMG00000160800.1 +48281 chr4 HAVANA gene 174536640 174540784 792.0 + 0 ENSG00000251584.1 lincRNA AC096751.2 1 OTTHUMG00000160774.1 +48282 chr4 HAVANA gene 174636914 174829314 9599.0 - 0 ENSG00000145451.12 protein_coding GLRA3 1 OTTHUMG00000149816.2 +48283 chr4 HAVANA gene 174923813 174924038 226.0 - 0 ENSG00000250200.1 processed_pseudogene AC105914.1 2 OTTHUMG00000160758.1 +48284 chr4 HAVANA gene 174829668 174978180 5957.0 + 0 ENSG00000168594.15 protein_coding ADAM29 1 OTTHUMG00000160764.5 retrogene +48285 chr4 HAVANA gene 174977571 174979381 233.0 - 0 ENSG00000250431.1 antisense AC105914.2 2 OTTHUMG00000160761.1 +48286 chr4 HAVANA gene 175017016 175019214 2199.0 + 0 ENSG00000249411.1 processed_pseudogene AC022325.1 2 OTTHUMG00000160766.1 +48287 chr4 HAVANA gene 175286605 175290767 1458.0 + 0 ENSG00000249284.1 processed_pseudogene AC095050.2 1 OTTHUMG00000160765.1 pseudo_consens +48288 chr4 HAVANA gene 175346358 175403110 905.0 - 0 ENSG00000248551.1 lincRNA AC095050.1 2 OTTHUMG00000160762.2 +48289 chr4 HAVANA gene 175458289 175466697 490.0 - 0 ENSG00000249945.1 lincRNA AC131094.1 1 OTTHUMG00000160767.1 +48290 chr4 HAVANA gene 175494614 175496000 1387.0 + 0 ENSG00000251174.1 processed_pseudogene TSEN2P1 1 OTTHUMG00000160763.1 pseudo_consens +48291 chr4 HAVANA gene 175574868 175576140 1273.0 + 0 ENSG00000248574.1 processed_pseudogene ADAM20P2 2 OTTHUMG00000160759.1 +48292 chr4 HAVANA gene 175790307 175812189 1213.0 + 0 ENSG00000249106.1 antisense AC097537.1 2 OTTHUMG00000160795.1 +48293 chr4 HAVANA gene 175962061 175962485 425.0 + 0 ENSG00000248249.1 processed_pseudogene AC110794.1 1 OTTHUMG00000160794.1 pseudo_consens +48294 chr4 HAVANA gene 175632934 176002664 7040.0 - 0 ENSG00000150625.16 protein_coding GPM6A 2 OTTHUMG00000160760.5 +48295 chr4 HAVANA gene 176012038 176014417 2380.0 - 0 ENSG00000250372.1 processed_pseudogene MARK2P4 1 OTTHUMG00000160790.1 pseudo_consens +48296 chr4 ENSEMBL gene 176098163 176098285 123.0 + 0 ENSG00000201516.1 snoRNA RF00432 3 +48297 chr4 HAVANA gene 176065834 176182818 7808.0 + 0 ENSG00000150627.15 protein_coding WDR17 1 OTTHUMG00000160791.4 ncRNA_host +48298 chr4 HAVANA gene 176184638 176195671 2464.0 - 0 ENSG00000150628.6 protein_coding SPATA4 2 OTTHUMG00000160788.2 +48299 chr4 HAVANA gene 176213673 176277571 4064.0 - 0 ENSG00000164122.8 protein_coding ASB5 1 OTTHUMG00000160793.3 +48300 chr4 HAVANA gene 176308268 176320458 610.0 - 0 ENSG00000248980.1 antisense AC019163.1 2 OTTHUMG00000160792.1 +48301 chr4 HAVANA gene 176319964 176332245 6831.0 + 0 ENSG00000129128.12 protein_coding SPCS3 2 OTTHUMG00000160789.1 +48302 chr4 HAVANA gene 176631392 176633231 1050.0 - 0 ENSG00000248480.1 processed_pseudogene AC093801.2 1 OTTHUMG00000160732.1 pseudo_consens +48303 chr4 HAVANA gene 176669621 176706145 383.0 + 0 ENSG00000248388.5 antisense AC093801.1 2 OTTHUMG00000160733.1 +48304 chr4 HAVANA gene 176683538 176792727 2420.0 - 0 ENSG00000150630.3 protein_coding VEGFC 2 OTTHUMG00000160734.3 +48305 chr4 HAVANA gene 176866614 176875457 428.0 - 0 ENSG00000249458.1 lincRNA AC092673.1 2 OTTHUMG00000160731.1 +48306 chr4 HAVANA gene 176875702 176880605 691.0 + 0 ENSG00000250263.1 lincRNA LINC02509 1 OTTHUMG00000160730.2 +48307 chr4 ENSEMBL gene 177181442 177181741 300.0 + 0 ENSG00000222859.1 misc_RNA RN7SKP136 3 +48308 chr4 HAVANA gene 177242539 177248773 421.0 - 0 ENSG00000249008.1 lincRNA AC097518.1 2 OTTHUMG00000160721.1 +48309 chr4 HAVANA gene 177343004 177357032 753.0 - 0 ENSG00000249084.1 antisense AC027627.1 2 OTTHUMG00000160720.1 +48310 chr4 HAVANA gene 177309836 177362943 2959.0 + 0 ENSG00000109674.3 protein_coding NEIL3 2 OTTHUMG00000160722.1 +48311 chr4 HAVANA gene 177430770 177442503 2675.0 - 0 ENSG00000038002.8 protein_coding AGA 2 OTTHUMG00000160723.2 +48312 chr4 ENSEMBL gene 177457111 177457228 118.0 - 0 ENSG00000285574.1 rRNA_pseudogene AC078881.2 3 +48313 chr4 ENSEMBL gene 177457111 177457228 118.0 - 0 ENSG00000201931.1 rRNA RNA5SP172 3 +48314 chr4 HAVANA gene 177444979 177677126 2161.0 + 0 ENSG00000250131.1 antisense AC078881.1 2 OTTHUMG00000160727.1 +48315 chr4 HAVANA gene 177686673 177691068 255.0 - 0 ENSG00000251416.1 lincRNA AC103879.1 2 OTTHUMG00000160728.1 +48316 chr4 HAVANA gene 177729638 177907936 1594.0 - 0 ENSG00000251504.1 lincRNA LINC01099 1 OTTHUMG00000160725.1 +48317 chr4 HAVANA gene 177728757 177990750 1034.0 + 0 ENSG00000231171.3 lincRNA LINC01098 1 OTTHUMG00000160724.1 +48318 chr4 ENSEMBL gene 178116721 178116861 141.0 - 0 ENSG00000253000.1 snRNA RNU1-45P 3 +48319 chr4 HAVANA gene 178286695 178287285 591.0 + 0 ENSG00000241877.1 processed_pseudogene AC095041.1 1 OTTHUMG00000157604.1 pseudo_consens +48320 chr4 ENSEMBL gene 178406695 178406830 136.0 + 0 ENSG00000201727.1 rRNA_pseudogene RNA5SP173 3 +48321 chr4 ENSEMBL gene 178685886 178685956 71.0 - 0 ENSG00000212191.1 snoRNA RF00571 3 +48322 chr4 HAVANA gene 179069437 179069594 158.0 + 0 ENSG00000250839.1 unprocessed_pseudogene AC018710.1 2 OTTHUMG00000160717.1 +48323 chr4 HAVANA gene 179389134 179465305 539.0 - 0 ENSG00000250993.1 lincRNA AC020551.1 2 OTTHUMG00000160713.2 +48324 chr4 HAVANA gene 179856853 179857581 420.0 + 0 ENSG00000248921.1 processed_pseudogene AC021193.1 1 OTTHUMG00000160712.1 pseudo_consens +48325 chr4 HAVANA gene 180573464 180574027 564.0 - 0 ENSG00000251025.1 processed_pseudogene NDUFB5P1 1 OTTHUMG00000160962.1 pseudo_consens +48326 chr4 HAVANA gene 180731164 180759038 529.0 - 0 ENSG00000249883.1 lincRNA AC104803.1 2 OTTHUMG00000160705.1 +48327 chr4 HAVANA gene 181064089 181159149 593.0 - 0 ENSG00000248197.1 lincRNA LINC00290 2 OTTHUMG00000160706.1 +48328 chr4 HAVANA gene 181237358 181237564 207.0 - 0 ENSG00000248770.1 unprocessed_pseudogene AC019235.1 2 OTTHUMG00000160699.1 +48329 chr4 HAVANA gene 181261161 181265029 493.0 - 0 ENSG00000249460.1 lincRNA LINC02500 1 OTTHUMG00000160700.1 +48330 chr4 HAVANA gene 181522666 181523001 336.0 + 0 ENSG00000225356.3 processed_pseudogene AC093840.1 1 OTTHUMG00000160698.1 pseudo_consens +48331 chr4 HAVANA gene 181820019 181829973 401.0 - 0 ENSG00000251336.1 lincRNA TEMN3-AS1 1 OTTHUMG00000160718.1 +48332 chr4 ENSEMBL gene 181834865 181835108 244.0 - 0 ENSG00000251742.1 misc_RNA RN7SKP13 3 +48333 chr4 HAVANA gene 181905790 181906467 678.0 - 0 ENSG00000251433.1 processed_pseudogene CCNHP1 1 OTTHUMG00000160684.1 pseudo_consens,overlapping_locus +48334 chr4 HAVANA gene 181874438 182145249 5551.0 - 0 ENSG00000177822.7 antisense AC098864.1 2 OTTHUMG00000133641.2 overlapping_locus +48335 chr4 ENSEMBL gene 182169293 182169378 86.0 + 0 ENSG00000221227.1 miRNA MIR1305 3 +48336 chr4 HAVANA gene 182144852 182190382 286.0 + 0 ENSG00000248266.1 sense_intronic AC108142.1 2 OTTHUMG00000160686.1 ncRNA_host,overlapping_locus +48337 chr4 ENSEMBL gene 182548659 182548779 121.0 + 0 ENSG00000252343.1 snRNA RNU2-34P 3 +48338 chr4 ENSEMBL gene 182631454 182631688 235.0 - 0 ENSG00000251714.1 misc_RNA RN7SKP67 3 +48339 chr4 HAVANA gene 182697902 182708042 518.0 - 0 ENSG00000248816.1 antisense AC079226.2 1 OTTHUMG00000160683.2 +48340 chr4 HAVANA gene 182772565 182773931 444.0 - 0 ENSG00000248694.1 antisense AC079226.1 2 OTTHUMG00000160687.2 +48341 chr4 HAVANA gene 182143987 182803024 11983.0 + 0 ENSG00000218336.8 protein_coding TENM3 2 OTTHUMG00000160682.5 ncRNA_host,overlapping_locus +48342 chr4 HAVANA gene 182881777 182882203 427.0 - 0 ENSG00000272646.1 lincRNA AC079766.1 2 OTTHUMG00000186436.1 +48343 chr4 HAVANA gene 182890060 182917936 3466.0 - 0 ENSG00000129187.14 protein_coding DCTD 2 OTTHUMG00000160685.4 +48344 chr4 HAVANA gene 183028601 183029720 823.0 - 0 ENSG00000250636.1 processed_pseudogene AC019193.1 1 OTTHUMG00000160676.1 pseudo_consens +48345 chr4 HAVANA gene 183037665 183040119 2455.0 + 0 ENSG00000230219.3 transcribed_processed_pseudogene FAM92A1P2 1 OTTHUMG00000160675.4 pseudo_consens +48346 chr4 HAVANA gene 183075480 183076033 554.0 - 0 ENSG00000273180.1 lincRNA AC019193.3 2 OTTHUMG00000186437.1 +48347 chr4 HAVANA gene 183094423 183095056 634.0 - 0 ENSG00000272784.1 lincRNA AC019193.2 2 OTTHUMG00000186440.1 +48348 chr4 HAVANA gene 183097017 183099199 2183.0 - 0 ENSG00000251359.4 lincRNA WWC2-AS2 2 OTTHUMG00000160677.1 +48349 chr4 HAVANA gene 183233628 183240634 404.0 - 0 ENSG00000251128.1 antisense WWC2-AS1 2 OTTHUMG00000160679.1 +48350 chr4 HAVANA gene 183318194 183320774 2581.0 - 0 ENSG00000177300.6 protein_coding CLDN22 2 OTTHUMG00000160627.1 +48351 chr4 HAVANA gene 183099293 183320777 9966.0 + 0 ENSG00000151718.15 protein_coding WWC2 1 OTTHUMG00000150685.3 +48352 chr4 HAVANA gene 183321764 183322426 663.0 - 0 ENSG00000185758.9 protein_coding CLDN24 2 OTTHUMG00000160628.5 +48353 chr4 HAVANA gene 183380345 183381705 1361.0 + 0 ENSG00000250292.1 processed_pseudogene AC093844.1 1 OTTHUMG00000160624.1 pseudo_consens +48354 chr4 HAVANA gene 183418890 183419805 916.0 - 0 ENSG00000248376.2 processed_pseudogene AC112698.1 1 OTTHUMG00000160620.4 pseudo_consens +48355 chr4 HAVANA gene 183444591 183448198 3193.0 + 0 ENSG00000168564.5 protein_coding CDKN2AIP 2 OTTHUMG00000160626.2 +48356 chr4 HAVANA gene 183483490 183484185 696.0 + 0 ENSG00000213434.2 processed_pseudogene VTI1BP2 1 OTTHUMG00000160629.1 pseudo_consens +48357 chr4 HAVANA gene 183494938 183504494 559.0 - 0 ENSG00000232648.3 antisense AC107214.1 1 OTTHUMG00000160630.1 +48358 chr4 HAVANA gene 183504994 183511096 1426.0 + 0 ENSG00000168556.6 protein_coding ING2 2 OTTHUMG00000150502.2 +48359 chr4 HAVANA gene 183516894 183517527 634.0 + 0 ENSG00000272744.1 lincRNA AC107214.2 2 OTTHUMG00000186441.1 +48360 chr4 ENSEMBL gene 183653572 183653676 105.0 - 0 ENSG00000252157.1 snRNA RNU6-479P 3 +48361 chr4 HAVANA gene 183639635 183659225 2776.0 - 0 ENSG00000182552.14 protein_coding RWDD4 2 OTTHUMG00000160632.3 ncRNA_host +48362 chr4 ENSEMBL gene 183675603 183675715 113.0 - 0 ENSG00000201433.1 snRNA RNU6-335P 3 +48363 chr4 ENSEMBL gene 183705931 183706031 101.0 + 0 ENSG00000251739.1 snRNA RNU6-1053P 3 +48364 chr4 HAVANA gene 183659267 183713594 5841.0 + 0 ENSG00000168538.15 protein_coding TRAPPC11 1 OTTHUMG00000160673.2 ncRNA_host +48365 chr4 HAVANA gene 183762115 183765721 526.0 - 0 ENSG00000283383.1 lincRNA AC108477.1 2 OTTHUMG00000191878.1 +48366 chr4 HAVANA gene 183987678 183988750 622.0 + 0 ENSG00000248206.1 sense_intronic AC074194.1 1 OTTHUMG00000160619.1 overlapping_locus +48367 chr4 HAVANA gene 184014035 184016382 2348.0 + 0 ENSG00000283355.1 TEC AC074194.2 2 OTTHUMG00000191879.1 +48368 chr4 HAVANA gene 183797692 184023526 11316.0 + 0 ENSG00000173320.11 protein_coding STOX2 1 OTTHUMG00000160618.7 overlapping_locus +48369 chr4 HAVANA gene 184072403 184073039 637.0 + 0 ENSG00000250726.1 processed_pseudogene AC107222.1 1 OTTHUMG00000160612.1 pseudo_consens +48370 chr4 HAVANA gene 184088706 184221230 4703.0 - 0 ENSG00000164303.10 protein_coding ENPP6 1 OTTHUMG00000160617.2 +48371 chr4 HAVANA gene 184254509 184255330 822.0 + 0 ENSG00000240159.1 processed_pseudogene AC079080.1 1 OTTHUMG00000157606.1 pseudo_consens +48372 chr4 ENSEMBL gene 184278936 184279233 298.0 + 0 ENSG00000244512.3 misc_RNA RN7SL28P 3 +48373 chr4 HAVANA gene 184299129 184299640 512.0 - 0 ENSG00000227765.4 processed_pseudogene MYL12BP2 1 OTTHUMG00000160610.1 pseudo_consens +48374 chr4 HAVANA gene 184340756 184353977 2353.0 - 0 ENSG00000180712.3 lincRNA LINC02363 2 OTTHUMG00000160616.1 +48375 chr4 HAVANA gene 184365183 184382306 2767.0 - 0 ENSG00000249096.6 lincRNA LINC02362 2 OTTHUMG00000160613.3 +48376 chr4 ENSEMBL gene 184431966 184432049 84.0 + 0 ENSG00000251878.1 snoRNA RF00152 3 +48377 chr4 HAVANA gene 184471924 184472609 686.0 - 0 ENSG00000270426.1 sense_intronic AC099343.2 2 OTTHUMG00000185263.1 overlapping_locus +48378 chr4 HAVANA gene 184387713 184474580 3116.0 - 0 ENSG00000168310.10 protein_coding IRF2 1 OTTHUMG00000160606.8 overlapping_locus +48379 chr4 HAVANA gene 184474802 184477304 2503.0 + 0 ENSG00000271646.1 bidirectional_promoter_lncRNA AC099343.3 2 OTTHUMG00000185264.1 +48380 chr4 HAVANA gene 184506460 184537554 1252.0 - 0 ENSG00000271538.5 lincRNA LINC02427 2 OTTHUMG00000185265.2 +48381 chr4 HAVANA gene 184559175 184559783 609.0 - 0 ENSG00000249056.1 processed_pseudogene AC099343.1 1 OTTHUMG00000160607.1 pseudo_consens +48382 chr4 HAVANA gene 184584093 184625030 1268.0 - 0 ENSG00000254233.1 lincRNA LINC02365 2 OTTHUMG00000163540.1 +48383 chr4 HAVANA gene 184627696 184649509 2899.0 - 0 ENSG00000164305.18 protein_coding CASP3 2 OTTHUMG00000133681.4 +48384 chr4 HAVANA gene 184649613 184694963 2843.0 + 0 ENSG00000164306.10 protein_coding PRIMPOL 1 OTTHUMG00000160495.3 +48385 chr4 HAVANA gene 184694618 184734133 2953.0 - 0 ENSG00000151725.11 protein_coding CENPU 2 OTTHUMG00000160499.19 +48386 chr4 HAVANA gene 184798296 184799046 751.0 - 0 ENSG00000249138.1 transcribed_processed_pseudogene SLED1 1 OTTHUMG00000160490.1 pseudo_consens,overlapping_locus +48387 chr4 HAVANA gene 184813619 184821300 628.0 + 0 ENSG00000251139.2 antisense AC084871.1 1 OTTHUMG00000160549.3 +48388 chr4 HAVANA gene 184755595 184826818 6284.0 - 0 ENSG00000151726.13 protein_coding ACSL1 1 OTTHUMG00000160547.4 overlapping_locus +48389 chr4 ENSEMBL gene 184851013 184851110 98.0 - 0 ENSG00000266698.1 miRNA MIR3945 3 +48390 chr4 HAVANA gene 184844585 184855751 986.0 - 0 ENSG00000251230.5 lincRNA MIR3945HG 2 OTTHUMG00000160604.1 ncRNA_host +48391 chr4 HAVANA gene 184893871 184899454 795.0 - 0 ENSG00000249173.5 lincRNA LINC01093 1 OTTHUMG00000160603.1 +48392 chr4 HAVANA gene 184910889 184911352 464.0 - 0 ENSG00000251147.1 processed_pseudogene AC084871.2 1 OTTHUMG00000160601.1 pseudo_consens +48393 chr4 ENSEMBL gene 184938383 184938440 58.0 - 0 ENSG00000263458.1 miRNA MIR4455 3 +48394 chr4 HAVANA gene 184984277 184988127 3851.0 - 0 ENSG00000279460.1 TEC AC112243.1 2 OTTHUMG00000160553.2 +48395 chr4 HAVANA gene 184988997 185005186 911.0 + 0 ENSG00000248517.1 lincRNA LINC02437 1 OTTHUMG00000160551.1 +48396 chr4 HAVANA gene 185018841 185020804 1236.0 + 0 ENSG00000187821.8 protein_coding HELT 2 OTTHUMG00000160484.1 +48397 chr4 HAVANA gene 185064981 185065323 343.0 + 0 ENSG00000249520.1 processed_pseudogene AC093824.1 1 OTTHUMG00000160483.1 pseudo_consens,overlapping_locus +48398 chr4 HAVANA gene 185051896 185107248 2526.0 + 0 ENSG00000250754.5 lincRNA LINC02436 2 OTTHUMG00000160487.2 overlapping_locus +48399 chr4 HAVANA gene 185143241 185150382 4844.0 + 0 ENSG00000151729.10 protein_coding SLC25A4 2 OTTHUMG00000134299.4 +48400 chr4 HAVANA gene 185159665 185209504 6886.0 - 0 ENSG00000164323.13 protein_coding CFAP97 1 OTTHUMG00000160468.4 +48401 chr4 HAVANA gene 185204237 185370185 4567.0 + 0 ENSG00000109762.15 protein_coding SNX25 2 OTTHUMG00000160475.1 +48402 chr4 HAVANA gene 185370725 185390928 587.0 + 0 ENSG00000250410.1 antisense AC112722.1 2 OTTHUMG00000160464.1 +48403 chr4 HAVANA gene 185363879 185395899 7360.0 - 0 ENSG00000109771.15 protein_coding LRP2BP 2 OTTHUMG00000160460.4 +48404 chr4 HAVANA gene 185396021 185400628 2580.0 + 0 ENSG00000186352.8 protein_coding ANKRD37 2 OTTHUMG00000160459.2 +48405 chr4 ENSEMBL gene 185415973 185416086 114.0 - 0 ENSG00000207231.1 misc_RNA RF00019 3 +48406 chr4 HAVANA gene 185399540 185425985 2781.0 - 0 ENSG00000109775.10 protein_coding UFSP2 1 OTTHUMG00000160441.4 ncRNA_host +48407 chr4 HAVANA gene 185426249 185449826 1366.0 + 0 ENSG00000205129.8 protein_coding C4orf47 2 OTTHUMG00000160458.15 +48408 chr4 HAVANA gene 185445182 185471759 3388.0 - 0 ENSG00000168491.9 protein_coding CCDC110 1 OTTHUMG00000160415.5 +48409 chr4 HAVANA gene 185471516 185472263 394.0 + 0 ENSG00000249679.1 antisense AC106897.1 2 OTTHUMG00000160454.1 +48410 chr4 HAVANA gene 185500660 185535612 9117.0 - 0 ENSG00000154553.14 protein_coding PDLIM3 2 OTTHUMG00000160412.7 +48411 chr4 HAVANA gene 185587909 185594003 1789.0 + 0 ENSG00000233110.1 antisense AC093797.1 2 OTTHUMG00000157217.2 +48412 chr4 HAVANA gene 185665885 185675417 618.0 + 0 ENSG00000235902.1 antisense AC108472.1 1 OTTHUMG00000157228.1 +48413 chr4 ENSEMBL gene 185709873 185709967 95.0 - 0 ENSG00000207497.1 misc_RNA RF00019 3 +48414 chr4 HAVANA gene 185756929 185757048 120.0 - 0 ENSG00000285745.1 processed_pseudogene AC104805.1 2 OTTHUMG00000192638.1 +48415 chr4 HAVANA gene 185918140 185919460 549.0 + 0 ENSG00000235149.1 lincRNA AC096659.1 1 OTTHUMG00000157216.1 +48416 chr4 HAVANA gene 185585444 185956652 16730.0 - 0 ENSG00000154556.18 protein_coding SORBS2 1 OTTHUMG00000157215.10 ncRNA_host +48417 chr4 ENSEMBL gene 186026456 186026586 131.0 - 0 ENSG00000222727.1 snRNA RNU4-64P 3 +48418 chr4 HAVANA gene 186069152 186088069 6724.0 + 0 ENSG00000164342.12 protein_coding TLR3 1 OTTHUMG00000160345.6 +48419 chr4 ENSEMBL gene 186130021 186130155 135.0 + 0 ENSG00000253013.1 snoRNA RF00322 3 +48420 chr4 HAVANA gene 186157896 186158843 864.0 + 0 ENSG00000250327.1 processed_pseudogene RPSAP70 1 OTTHUMG00000160361.1 pseudo_consens,overlapping_locus +48421 chr4 HAVANA gene 186170863 186171257 395.0 - 0 ENSG00000251008.1 processed_pseudogene ORAOV1P1 1 OTTHUMG00000160357.1 pseudo_consens +48422 chr4 HAVANA gene 186104419 186172667 5218.0 + 0 ENSG00000109794.13 protein_coding FAM149A 1 OTTHUMG00000160565.11 ncRNA_host,overlapping_locus +48423 chr4 HAVANA gene 186189032 186191490 2459.0 - 0 ENSG00000279943.1 TEC FLJ38576 2 OTTHUMG00000187206.2 +48424 chr4 HAVANA gene 186191520 186213456 9807.0 + 0 ENSG00000145476.15 protein_coding CYP4V2 2 OTTHUMG00000160379.2 overlapping_locus +48425 chr4 HAVANA gene 186208979 186258471 2953.0 + 0 ENSG00000164344.15 protein_coding KLKB1 1 OTTHUMG00000150347.5 overlapping_locus +48426 chr4 HAVANA gene 186265945 186288806 3364.0 + 0 ENSG00000088926.13 protein_coding F11 1 OTTHUMG00000150311.7 +48427 chr4 HAVANA gene 186328716 186329601 886.0 - 0 ENSG00000213332.4 processed_pseudogene SLC25A5P6 1 OTTHUMG00000160314.1 pseudo_consens,overlapping_locus +48428 chr4 HAVANA gene 186286094 186500997 2683.0 - 0 ENSG00000251165.5 antisense F11-AS1 2 OTTHUMG00000160319.4 overlapping_locus +48429 chr4 ENSEMBL gene 186501109 186501215 107.0 + 0 ENSG00000212387.1 snRNA RNU6-1055P 3 +48430 chr4 HAVANA gene 186426546 186555328 700.0 - 0 ENSG00000272297.2 protein_coding AC018709.1 2 OTTHUMG00000160316.3 overlapping_locus +48431 chr4 HAVANA gene 186533655 186555567 1289.0 - 0 ENSG00000168412.6 protein_coding MTNR1A 2 OTTHUMG00000185575.1 overlapping_locus +48432 chr4 HAVANA gene 186587783 186726722 16177.0 - 0 ENSG00000083857.13 protein_coding FAT1 1 OTTHUMG00000160320.9 +48433 chr4 HAVANA gene 186890969 186892366 496.0 + 0 ENSG00000250829.2 lincRNA AC108865.1 2 OTTHUMG00000160310.2 +48434 chr4 HAVANA gene 186892552 186892983 432.0 + 0 ENSG00000272218.1 lincRNA AC108865.2 2 OTTHUMG00000185360.1 +48435 chr4 HAVANA gene 186900540 186900838 299.0 + 0 ENSG00000249539.1 processed_pseudogene MRPS36P2 1 OTTHUMG00000160311.1 pseudo_consens +48436 chr4 HAVANA gene 186979490 187021973 474.0 - 0 ENSG00000249742.1 lincRNA AC110772.1 1 OTTHUMG00000160309.1 +48437 chr4 HAVANA gene 187060099 187060930 421.0 + 0 ENSG00000250971.1 lincRNA AC108474.1 1 OTTHUMG00000160313.2 +48438 chr4 HAVANA gene 187201986 187209346 1211.0 + 0 ENSG00000249747.1 lincRNA LINC02374 1 OTTHUMG00000160312.3 +48439 chr4 HAVANA gene 187304083 187309682 2114.0 - 0 ENSG00000250658.1 lincRNA AC097652.1 2 OTTHUMG00000160295.1 +48440 chr4 HAVANA gene 187370648 187371921 498.0 + 0 ENSG00000250042.1 lincRNA LINC02514 1 OTTHUMG00000160297.1 +48441 chr4 HAVANA gene 187413564 187415697 536.0 + 0 ENSG00000250620.1 lincRNA LINC02515 1 OTTHUMG00000160298.1 +48442 chr4 HAVANA gene 187441677 187444298 1223.0 - 0 ENSG00000251643.1 processed_pseudogene AC093763.2 1 OTTHUMG00000160296.2 pseudo_consens +48443 chr4 HAVANA gene 187516153 187517208 699.0 - 0 ENSG00000251490.1 lincRNA AC093763.1 2 OTTHUMG00000160299.1 +48444 chr4 HAVANA gene 187613765 187660369 762.0 + 0 ENSG00000249642.1 lincRNA AC097521.1 1 OTTHUMG00000160300.2 +48445 chr4 HAVANA gene 187532878 187672641 1266.0 - 0 ENSG00000250590.5 lincRNA LINC02492 1 OTTHUMG00000160302.5 +48446 chr4 HAVANA gene 187746094 187748199 2106.0 - 0 ENSG00000249162.1 processed_pseudogene ADAM20P3 2 OTTHUMG00000160214.1 +48447 chr4 HAVANA gene 187970273 187971284 674.0 + 0 ENSG00000213331.4 processed_pseudogene AC108073.1 1 OTTHUMG00000160218.1 pseudo_consens +48448 chr4 HAVANA gene 187995771 188005050 2656.0 + 0 ENSG00000179059.9 protein_coding ZFP42 2 OTTHUMG00000160235.1 +48449 chr4 HAVANA gene 188106558 188106914 357.0 + 0 ENSG00000241011.1 processed_pseudogene AC108073.2 1 OTTHUMG00000158781.1 pseudo_consens +48450 chr4 HAVANA gene 188091273 188109603 3050.0 - 0 ENSG00000179046.8 protein_coding TRIML2 1 OTTHUMG00000160225.2 +48451 chr4 ENSEMBL gene 188121531 188121634 104.0 - 0 ENSG00000201085.1 snRNA RNU6-173P 3 +48452 chr4 HAVANA gene 188140822 188143379 505.0 - 0 ENSG00000247130.2 antisense AC138781.1 2 OTTHUMG00000160238.1 +48453 chr4 HAVANA gene 188139419 188147743 2113.0 + 0 ENSG00000184108.7 protein_coding TRIML1 2 OTTHUMG00000160237.1 +48454 chr4 HAVANA gene 188160065 188161139 677.0 + 0 ENSG00000248370.1 lincRNA LINC02434 2 OTTHUMG00000160236.1 +48455 chr4 HAVANA gene 188349376 188350024 649.0 - 0 ENSG00000242169.2 processed_pseudogene AC093789.1 1 OTTHUMG00000157611.2 pseudo_consens +48456 chr4 HAVANA gene 188387471 188389666 1849.0 - 0 ENSG00000248880.1 processed_pseudogene ICE2P1 1 OTTHUMG00000160211.1 pseudo_consens +48457 chr4 HAVANA gene 188630924 188631747 336.0 + 0 ENSG00000250523.1 processed_pseudogene AC093909.3 2 OTTHUMG00000160212.1 overlapping_locus +48458 chr4 HAVANA gene 188400736 188681051 3202.0 + 0 ENSG00000249378.5 lincRNA LINC01060 2 OTTHUMG00000160242.4 overlapping_locus +48459 chr4 HAVANA gene 188713644 188715442 1799.0 + 0 ENSG00000275826.1 processed_pseudogene AC093909.5 1 OTTHUMG00000187586.1 pseudo_consens +48460 chr4 ENSEMBL gene 188716665 188716725 61.0 - 0 ENSG00000252275.1 snRNA RNU7-192P 3 +48461 chr4 HAVANA gene 188738373 188739494 1122.0 + 0 ENSG00000180015.12 processed_pseudogene AC093909.1 2 OTTHUMG00000160289.1 +48462 chr4 HAVANA gene 188740507 188741281 775.0 - 0 ENSG00000278974.1 TEC AC093909.6 2 OTTHUMG00000176269.1 +48463 chr4 HAVANA gene 188757679 188778979 437.0 + 0 ENSG00000249269.1 lincRNA AC093909.2 1 OTTHUMG00000160325.1 overlapping_locus +48464 chr4 HAVANA gene 188776657 188785511 426.0 + 0 ENSG00000251619.1 lincRNA LINC02508 1 OTTHUMG00000160328.1 overlapping_locus +48465 chr4 HAVANA gene 188777679 188796633 1991.0 - 0 ENSG00000250626.2 lincRNA AC093909.4 1 OTTHUMG00000160282.3 +48466 chr4 HAVANA gene 188990715 189002075 646.0 - 0 ENSG00000250024.1 lincRNA AC122138.1 2 OTTHUMG00000161907.1 +48467 chr4 HAVANA gene 189193100 189204877 412.0 + 0 ENSG00000251310.1 lincRNA AC107391.1 2 OTTHUMG00000161908.1 +48468 chr4 HAVANA gene 189288677 189291336 339.0 - 0 ENSG00000249877.1 lincRNA AC105924.1 2 OTTHUMG00000161909.1 +48469 chr4 HAVANA gene 189472965 189475192 2228.0 + 0 ENSG00000205100.2 transcribed_processed_pseudogene HSP90AA4P 1 OTTHUMG00000160204.1 pseudo_consens +48470 chr4 HAVANA gene 189659605 189661486 879.0 + 0 ENSG00000250739.1 lincRNA LINC01262 2 OTTHUMG00000160329.1 +48471 chr4 HAVANA gene 189703881 189704490 610.0 - 0 ENSG00000272566.1 lincRNA AF250324.1 2 OTTHUMG00000186463.1 +48472 chr4 ENSEMBL gene 189709539 189709714 176.0 - 0 ENSG00000202215.1 snRNA RNU1-51P 3 +48473 chr4 HAVANA gene 189881515 189884868 592.0 + 0 ENSG00000250666.1 lincRNA LINC01596 1 OTTHUMG00000160584.1 +48474 chr4 HAVANA gene 189780336 189940271 2304.0 - 0 ENSG00000245685.6 lincRNA FRG1-DT 1 OTTHUMG00000160585.3 +48475 chr4 HAVANA gene 189940788 189963204 1707.0 + 0 ENSG00000109536.11 protein_coding FRG1 1 OTTHUMG00000160202.24 +48476 chr4 HAVANA gene 189973599 189973847 249.0 - 0 ENSG00000249462.1 processed_pseudogene MLLT10P2 2 OTTHUMG00000161001.1 +48477 chr4 HAVANA gene 189979902 189982379 889.0 + 0 ENSG00000271307.3 processed_pseudogene AF146191.1 2 OTTHUMG00000185262.3 +48478 chr4 HAVANA gene 189982523 189984871 1305.0 - 0 ENSG00000251297.1 unprocessed_pseudogene TUBB7P 1 OTTHUMG00000161002.1 pseudo_consens +48479 chr4 ENSEMBL gene 190015138 190015255 118.0 + 0 ENSG00000199572.1 rRNA_pseudogene RNA5SP174 3 +48480 chr4 ENSEMBL gene 190017696 190017814 119.0 + 0 ENSG00000201145.1 rRNA_pseudogene RNA5SP175 3 +48481 chr4 HAVANA gene 190021407 190022665 1259.0 - 0 ENSG00000224807.5 unprocessed_pseudogene DUX4L9 1 OTTHUMG00000161003.2 pseudo_consens +48482 chr4 HAVANA gene 190024351 190027257 2103.0 - 0 ENSG00000205097.6 protein_coding FRG2 2 OTTHUMG00000160339.2 +48483 chr4 HAVANA gene 190037916 190038399 484.0 - 0 ENSG00000250053.1 processed_pseudogene RARRES2P4 1 OTTHUMG00000160173.1 pseudo_consens +48484 chr4 HAVANA gene 190041342 190043414 2073.0 + 0 ENSG00000214273.4 processed_pseudogene AGGF1P1 1 OTTHUMG00000160174.1 pseudo_consens +48485 chr4 HAVANA gene 190057902 190063005 1343.0 - 0 ENSG00000249003.1 unprocessed_pseudogene CLUHP4 2 OTTHUMG00000161343.1 +48486 chr4 HAVANA gene 190065233 190065914 682.0 + 0 ENSG00000277162.1 unprocessed_pseudogene U85056.1 1 OTTHUMG00000170694.3 pseudo_consens,overlapping_locus +48487 chr4 HAVANA gene 190064502 190067864 3363.0 + 0 ENSG00000281591.1 lincRNA DBET 2 OTTHUMG00000189731.1 overlapping_locus +48488 chr4 HAVANA gene 190067935 190069209 1275.0 + 0 ENSG00000281720.1 unprocessed_pseudogene DUX4L8 2 OTTHUMG00000161320.5 +48489 chr4 HAVANA gene 190071232 190072506 1275.0 + 0 ENSG00000281652.1 unprocessed_pseudogene DUX4L7 2 OTTHUMG00000161314.4 +48490 chr4 HAVANA gene 190074525 190075799 1275.0 + 0 ENSG00000281058.1 unprocessed_pseudogene DUX4L6 2 OTTHUMG00000161313.4 +48491 chr4 HAVANA gene 190077818 190079092 1275.0 + 0 ENSG00000280799.1 unprocessed_pseudogene DUX4L5 1 OTTHUMG00000161315.4 pseudo_consens +48492 chr4 HAVANA gene 190081118 190082386 1269.0 + 0 ENSG00000258834.4 unprocessed_pseudogene DUX4L4 1 OTTHUMG00000161318.4 pseudo_consens +48493 chr4 HAVANA gene 190084412 190085686 1275.0 + 0 ENSG00000280757.1 unprocessed_pseudogene DUX4L1 2 OTTHUMG00000161317.4 +48494 chr4 HAVANA gene 190087705 190088979 1275.0 + 0 ENSG00000281627.1 unprocessed_pseudogene DUX4L3 1 OTTHUMG00000161319.4 pseudo_consens +48495 chr4 HAVANA gene 190091005 190092279 1275.0 + 0 ENSG00000280457.1 unprocessed_pseudogene DUX4L2 2 OTTHUMG00000161316.4 +48496 chr4 HAVANA gene 190173774 190185942 2036.0 + 0 ENSG00000260596.5 protein_coding DUX4 2 OTTHUMG00000175568.1 retrogene +48497 chr4 HAVANA gene 190195738 190195978 241.0 - 0 ENSG00000282994.1 processed_pseudogene AC215524.1 2 OTTHUMG00000191474.1 +48498 chr4 HAVANA gene 190195727 190196190 464.0 + 0 ENSG00000261914.2 processed_pseudogene RPL23AP84 1 OTTHUMG00000179679.1 pseudo_consens +48499 chr5 HAVANA gene 58198 58915 718.0 + 0 ENSG00000250020.1 processed_pseudogene AC113430.1 1 OTTHUMG00000161552.1 pseudo_consens +48500 chr5 ENSEMBL gene 144087 144197 111.0 - 0 ENSG00000199540.1 misc_RNA RF00019 3 +48501 chr5 HAVANA gene 92151 189972 13304.0 + 0 ENSG00000153404.14 protein_coding PLEKHG4B 2 OTTHUMG00000161570.2 +48502 chr5 HAVANA gene 191511 195353 1573.0 + 0 ENSG00000185028.3 protein_coding LRRC14B 1 OTTHUMG00000161578.3 +48503 chr5 HAVANA gene 195778 196341 564.0 + 0 ENSG00000261434.1 sense_overlapping AC021087.3 2 OTTHUMG00000175446.1 +48504 chr5 HAVANA gene 213898 217279 2881.0 - 0 ENSG00000260774.1 processed_transcript AC021087.2 2 OTTHUMG00000161585.1 overlapping_locus +48505 chr5 HAVANA gene 196871 218215 9701.0 - 0 ENSG00000164366.3 protein_coding CCDC127 2 OTTHUMG00000161586.3 overlapping_locus +48506 chr5 HAVANA gene 218241 256700 8383.0 + 0 ENSG00000073578.16 protein_coding SDHA 1 OTTHUMG00000090275.5 +48507 chr5 HAVANA gene 269858 271516 522.0 - 0 ENSG00000248925.1 antisense HRAT5 1 OTTHUMG00000161587.1 +48508 chr5 HAVANA gene 288833 290321 1203.0 - 0 ENSG00000250848.1 processed_pseudogene AC021087.1 1 OTTHUMG00000161584.1 pseudo_consens +48509 chr5 HAVANA gene 271621 353856 9493.0 + 0 ENSG00000249915.7 protein_coding PDCD6 1 OTTHUMG00000090283.5 overlapping_locus +48510 chr5 HAVANA gene 403731 404546 816.0 - 0 ENSG00000214278.4 processed_pseudogene AC010442.1 2 OTTHUMG00000161650.1 +48511 chr5 HAVANA gene 418703 419109 407.0 + 0 ENSG00000250645.1 processed_pseudogene AC010442.2 1 OTTHUMG00000161640.2 pseudo_consens,overlapping_locus +48512 chr5 HAVANA gene 304176 438291 7678.0 + 0 ENSG00000063438.16 protein_coding AHRR 1 OTTHUMG00000162171.8 overlapping_locus +48513 chr5 HAVANA gene 441498 443160 1663.0 - 0 ENSG00000221990.4 antisense EXOC3-AS1 2 OTTHUMG00000162235.1 +48514 chr5 HAVANA gene 443158 471937 8182.0 + 0 ENSG00000180104.15 protein_coding EXOC3 1 OTTHUMG00000162205.4 +48515 chr5 HAVANA gene 466124 473098 2766.0 - 0 ENSG00000188242.4 3prime_overlapping_ncRNA PP7080 1 OTTHUMG00000162206.2 overlapping_locus +48516 chr5 HAVANA gene 473236 480884 4302.0 + 0 ENSG00000225138.7 processed_transcript SLC9A3-AS1 2 OTTHUMG00000167373.3 +48517 chr5 HAVANA gene 470458 524332 5635.0 - 0 ENSG00000066230.11 protein_coding SLC9A3 2 OTTHUMG00000090315.3 overlapping_locus +48518 chr5 HAVANA gene 524705 526594 442.0 + 0 ENSG00000250385.1 antisense AC106772.2 1 OTTHUMG00000162153.2 +48519 chr5 ENSEMBL gene 535840 535882 43.0 - 0 ENSG00000264233.1 miRNA MIR4456 3 +48520 chr5 HAVANA gene 602620 612210 591.0 - 0 ENSG00000249650.1 antisense AC106772.1 2 OTTHUMG00000162152.1 +48521 chr5 HAVANA gene 612272 667168 3658.0 + 0 ENSG00000112877.7 protein_coding CEP72 1 OTTHUMG00000161745.4 +48522 chr5 HAVANA gene 675826 676616 791.0 + 0 ENSG00000271781.1 antisense AC026740.1 2 OTTHUMG00000185406.1 +48523 chr5 HAVANA gene 659862 693395 6022.0 - 0 ENSG00000171368.11 protein_coding TPPP 2 OTTHUMG00000131011.4 +48524 chr5 HAVANA gene 710360 766952 4840.0 - 0 ENSG00000206077.10 protein_coding ZDHHC11B 2 OTTHUMG00000162148.3 +48525 chr5 HAVANA gene 767382 768930 239.0 - 0 ENSG00000249908.2 unprocessed_pseudogene BRD9P2 2 OTTHUMG00000162147.2 +48526 chr5 HAVANA gene 770005 770113 109.0 - 0 ENSG00000285522.1 unprocessed_pseudogene AC026740.2 2 OTTHUMG00000193337.1 +48527 chr5 HAVANA gene 816346 817001 656.0 + 0 ENSG00000247872.2 processed_pseudogene SPCS2P3 1 OTTHUMG00000161652.1 pseudo_consens +48528 chr5 HAVANA gene 795606 850986 6953.0 - 0 ENSG00000188818.12 protein_coding ZDHHC11 2 OTTHUMG00000090319.5 overlapping_locus +48529 chr5 HAVANA gene 850291 892824 9572.0 - 0 ENSG00000028310.17 protein_coding BRD9 2 OTTHUMG00000159258.4 overlapping_locus +48530 chr5 HAVANA gene 892643 919357 3560.0 + 0 ENSG00000071539.13 protein_coding TRIP13 1 OTTHUMG00000090349.27 +48531 chr5 HAVANA gene 946315 956520 559.0 + 0 ENSG00000248949.1 lincRNA AC122719.1 2 OTTHUMG00000162130.1 +48532 chr5 HAVANA gene 979365 981300 420.0 + 0 ENSG00000250173.1 lincRNA AC122719.2 1 OTTHUMG00000162131.1 +48533 chr5 HAVANA gene 987180 997308 3482.0 - 0 ENSG00000215246.5 antisense AC116351.1 2 OTTHUMG00000161930.2 +48534 chr5 HAVANA gene 1005039 1006623 1585.0 + 0 ENSG00000272347.1 lincRNA AC116351.2 2 OTTHUMG00000185407.1 +48535 chr5 HAVANA gene 1008829 1038943 2885.0 + 0 ENSG00000145506.13 protein_coding NKD2 1 OTTHUMG00000090348.3 +48536 chr5 ENSEMBL gene 1062896 1062974 79.0 - 0 ENSG00000263834.1 miRNA MIR4635 3 +48537 chr5 HAVANA gene 1050376 1112035 5984.0 - 0 ENSG00000113504.20 protein_coding SLC12A7 2 OTTHUMG00000161931.9 ncRNA_host +48538 chr5 HAVANA gene 1173141 1178605 1761.0 - 0 ENSG00000249201.2 antisense CTD-3080P12.3 1 OTTHUMG00000161928.2 +48539 chr5 HAVANA gene 1201595 1225117 5276.0 + 0 ENSG00000174358.15 protein_coding SLC6A19 2 OTTHUMG00000161636.1 +48540 chr5 HAVANA gene 1225355 1246189 2121.0 + 0 ENSG00000164363.9 protein_coding SLC6A18 2 OTTHUMG00000090356.4 +48541 chr5 HAVANA gene 1253147 1295069 4616.0 - 0 ENSG00000164362.19 protein_coding TERT 2 OTTHUMG00000090357.6 +48542 chr5 ENSEMBL gene 1309310 1309377 68.0 - 0 ENSG00000263670.1 miRNA MIR4457 3 +48543 chr5 HAVANA gene 1317744 1345099 6557.0 - 0 ENSG00000049656.13 protein_coding CLPTM1L 2 OTTHUMG00000131015.4 +48544 chr5 HAVANA gene 1370543 1370945 403.0 - 0 ENSG00000248951.2 processed_pseudogene MTCO2P32 2 OTTHUMG00000161735.2 overlapping_locus +48545 chr5 HAVANA gene 1363582 1380067 1692.0 - 0 ENSG00000250584.2 lincRNA LINC01511 1 OTTHUMG00000161736.2 overlapping_locus +48546 chr5 HAVANA gene 1383159 1386409 3251.0 - 0 ENSG00000279908.1 TEC AC026748.1 2 OTTHUMG00000173424.1 +48547 chr5 HAVANA gene 1392790 1445430 4461.0 - 0 ENSG00000142319.17 protein_coding SLC6A3 2 OTTHUMG00000131016.6 +48548 chr5 ENSEMBL gene 1510762 1510856 95.0 - 0 ENSG00000273742.1 miRNA MIR6075 3 +48549 chr5 HAVANA gene 1456480 1523977 6494.0 - 0 ENSG00000153395.9 protein_coding LPCAT1 2 OTTHUMG00000131017.4 ncRNA_host +48550 chr5 HAVANA gene 1544107 1551710 692.0 - 0 ENSG00000251532.1 lincRNA AC091849.2 2 OTTHUMG00000162543.1 +48551 chr5 HAVANA gene 1572222 1594620 1173.0 - 0 ENSG00000185986.11 transcribed_unprocessed_pseudogene SDHAP3 2 OTTHUMG00000161733.4 +48552 chr5 HAVANA gene 1598127 1598247 121.0 + 0 ENSG00000248126.1 unprocessed_pseudogene AC091849.1 2 OTTHUMG00000162542.1 overlapping_locus +48553 chr5 HAVANA gene 1594626 1611467 1661.0 + 0 ENSG00000271119.1 lincRNA AC026412.3 2 OTTHUMG00000185137.1 overlapping_locus +48554 chr5 HAVANA gene 1614836 1616334 1075.0 + 0 ENSG00000232615.4 processed_pseudogene AC026412.2 1 OTTHUMG00000161637.3 pseudo_consens +48555 chr5 HAVANA gene 1598920 1634005 3364.0 - 0 ENSG00000188002.10 transcribed_unprocessed_pseudogene AC026412.1 2 OTTHUMG00000161734.3 +48556 chr5 ENSEMBL gene 1708785 1708868 84.0 - 0 ENSG00000263746.1 miRNA MIR4277 3 +48557 chr5 HAVANA gene 1725149 1728172 3024.0 + 0 ENSG00000260066.1 lincRNA AC112176.1 2 OTTHUMG00000173459.1 +48558 chr5 HAVANA gene 1798386 1801366 1394.0 - 0 ENSG00000171421.12 protein_coding MRPL36 2 OTTHUMG00000090373.5 +48559 chr5 HAVANA gene 1801400 1816605 1451.0 + 0 ENSG00000145494.11 protein_coding NDUFS6 2 OTTHUMG00000090372.3 +48560 chr5 HAVANA gene 1850950 1851497 428.0 + 0 ENSG00000249966.1 antisense AC025183.2 2 OTTHUMG00000161599.1 +48561 chr5 HAVANA gene 1855970 1856568 493.0 - 0 ENSG00000250417.1 lincRNA LINC02116 2 OTTHUMG00000161601.1 +48562 chr5 HAVANA gene 1858409 1859890 1482.0 - 0 ENSG00000279222.1 TEC AC025183.3 2 OTTHUMG00000175438.1 +48563 chr5 HAVANA gene 1883966 1884649 425.0 + 0 ENSG00000249116.1 antisense AC025183.1 1 OTTHUMG00000161602.1 +48564 chr5 HAVANA gene 1877413 1887236 2815.0 - 0 ENSG00000113430.9 protein_coding IRX4 1 OTTHUMG00000090411.4 +48565 chr5 HAVANA gene 1887332 1900493 1635.0 + 0 ENSG00000249326.1 antisense CTD-2194D22.4 2 OTTHUMG00000161605.1 +48566 chr5 HAVANA gene 1933863 1959176 888.0 + 0 ENSG00000248994.1 lincRNA AC126768.2 1 OTTHUMG00000161604.1 +48567 chr5 HAVANA gene 1963609 1967154 490.0 - 0 ENSG00000248597.1 lincRNA AC126768.1 1 OTTHUMG00000161600.1 +48568 chr5 HAVANA gene 1968094 1969013 560.0 + 0 ENSG00000249731.1 lincRNA AC126768.3 2 OTTHUMG00000161603.1 +48569 chr5 ENSEMBL gene 2184710 2184820 111.0 + 0 ENSG00000201026.1 misc_RNA RF00019 3 +48570 chr5 HAVANA gene 2261859 2262023 165.0 + 0 ENSG00000275733.1 processed_pseudogene AC092266.1 1 OTTHUMG00000187564.1 pseudo_consens +48571 chr5 HAVANA gene 2712591 2715237 2647.0 + 0 ENSG00000281560.1 lincRNA LSINCT5 2 OTTHUMG00000189568.1 +48572 chr5 HAVANA gene 2736662 2737759 688.0 - 0 ENSG00000259757.1 lincRNA AC091891.1 2 OTTHUMG00000172228.1 +48573 chr5 HAVANA gene 2745845 2751662 3384.0 - 0 ENSG00000170561.12 protein_coding IRX2 1 OTTHUMG00000090377.3 +48574 chr5 HAVANA gene 2752131 2755397 1925.0 + 0 ENSG00000186493.12 protein_coding C5orf38 1 OTTHUMG00000161741.12 +48575 chr5 HAVANA gene 2787451 2788549 1099.0 - 0 ENSG00000249541.1 processed_pseudogene AC116359.1 1 OTTHUMG00000161609.2 pseudo_consens +48576 chr5 HAVANA gene 2831021 2835139 560.0 - 0 ENSG00000248137.1 lincRNA AC094105.1 2 OTTHUMG00000161606.1 +48577 chr5 HAVANA gene 2965006 2967628 553.0 + 0 ENSG00000248736.1 lincRNA AC112192.1 1 OTTHUMG00000161607.2 +48578 chr5 HAVANA gene 3177835 3181232 649.0 + 0 ENSG00000249808.2 lincRNA LINC01377 2 OTTHUMG00000161608.2 +48579 chr5 HAVANA gene 3452816 3461660 574.0 + 0 ENSG00000249830.1 lincRNA LINC02162 1 OTTHUMG00000161631.1 +48580 chr5 HAVANA gene 3496229 3504004 768.0 - 0 ENSG00000250716.1 lincRNA LINC01017 2 OTTHUMG00000161633.1 overlapping_locus +48581 chr5 HAVANA gene 3417152 3536094 3199.0 - 0 ENSG00000248118.1 lincRNA LINC01019 2 OTTHUMG00000161629.1 overlapping_locus +48582 chr5 HAVANA gene 3596211 3600188 383.0 - 0 ENSG00000259603.1 antisense AC016595.1 2 OTTHUMG00000172226.1 +48583 chr5 HAVANA gene 3596054 3601403 1858.0 + 0 ENSG00000170549.3 protein_coding IRX1 2 OTTHUMG00000161632.1 +48584 chr5 HAVANA gene 4012708 4013649 559.0 - 0 ENSG00000248962.1 lincRNA AC025773.1 2 OTTHUMG00000161634.1 +48585 chr5 HAVANA gene 4033713 4041764 686.0 - 0 ENSG00000249994.1 lincRNA AC025187.1 2 OTTHUMG00000161630.1 +48586 chr5 HAVANA gene 4135682 4143648 566.0 + 0 ENSG00000250921.1 lincRNA LINC02063 1 OTTHUMG00000161635.1 +48587 chr5 HAVANA gene 4436850 4440259 3300.0 - 0 ENSG00000260763.1 lincRNA AC106799.3 2 OTTHUMG00000175410.1 +48588 chr5 HAVANA gene 4512262 4516776 1676.0 + 0 ENSG00000231291.3 lincRNA AC106799.1 2 OTTHUMG00000161646.1 +48589 chr5 HAVANA gene 4640731 4648254 540.0 + 0 ENSG00000251371.1 lincRNA AC010634.1 1 OTTHUMG00000161641.1 +48590 chr5 HAVANA gene 4773481 4774865 801.0 + 0 ENSG00000249521.1 lincRNA LINC02114 2 OTTHUMG00000161644.1 +48591 chr5 HAVANA gene 4775476 4805769 456.0 - 0 ENSG00000248311.1 lincRNA AC026719.1 2 OTTHUMG00000161647.1 overlapping_locus +48592 chr5 HAVANA gene 4831699 4849800 295.0 - 0 ENSG00000248467.1 lincRNA AC026719.2 2 OTTHUMG00000161649.1 overlapping_locus +48593 chr5 HAVANA gene 4451930 4866221 721.0 - 0 ENSG00000248973.1 lincRNA AC106799.2 2 OTTHUMG00000161642.1 overlapping_locus +48594 chr5 HAVANA gene 4866521 4874759 471.0 + 0 ENSG00000249941.1 lincRNA AC026415.1 2 OTTHUMG00000161645.2 +48595 chr5 HAVANA gene 4967764 4970425 444.0 - 0 ENSG00000251506.1 lincRNA AC010451.3 1 OTTHUMG00000161648.1 +48596 chr5 HAVANA gene 4974690 5034267 556.0 - 0 ENSG00000250481.1 lincRNA AC010451.1 2 OTTHUMG00000161643.2 +48597 chr5 HAVANA gene 5046796 5049497 642.0 - 0 ENSG00000251426.1 lincRNA AC010451.2 1 OTTHUMG00000161659.2 +48598 chr5 HAVANA gene 5034359 5070004 2070.0 + 0 ENSG00000215231.7 lincRNA LINC01020 2 OTTHUMG00000161653.2 +48599 chr5 HAVANA gene 5069192 5078311 432.0 - 0 ENSG00000250529.1 lincRNA LINC02121 2 OTTHUMG00000161660.1 +48600 chr5 ENSEMBL gene 5126046 5126337 292.0 + 0 ENSG00000223007.1 misc_RNA RN7SKP73 3 +48601 chr5 HAVANA gene 5132780 5140054 889.0 - 0 ENSG00000250579.1 antisense CTD-2297D10.2 2 OTTHUMG00000161668.1 +48602 chr5 HAVANA gene 5142138 5176214 454.0 - 0 ENSG00000250866.1 antisense AC022424.1 2 OTTHUMG00000161665.1 +48603 chr5 HAVANA gene 5140330 5320304 5863.0 + 0 ENSG00000145536.15 protein_coding ADAMTS16 2 OTTHUMG00000161663.1 +48604 chr5 HAVANA gene 5375723 5376836 1114.0 - 0 ENSG00000251568.1 processed_pseudogene ALG3P1 1 OTTHUMG00000161662.1 pseudo_consens +48605 chr5 HAVANA gene 5395378 5395957 580.0 - 0 ENSG00000248729.1 processed_pseudogene MTCO1P30 2 OTTHUMG00000161666.1 +48606 chr5 HAVANA gene 5395972 5396335 364.0 - 0 ENSG00000250808.1 processed_pseudogene MTCO2P30 2 OTTHUMG00000161667.1 +48607 chr5 HAVANA gene 5396477 5396968 492.0 - 0 ENSG00000251476.2 processed_pseudogene MTCO1P31 2 OTTHUMG00000161664.2 +48608 chr5 HAVANA gene 5420664 5490234 8678.0 + 0 ENSG00000164151.11 protein_coding ICE1 2 OTTHUMG00000161639.4 +48609 chr5 HAVANA gene 6019029 6022283 3255.0 - 0 ENSG00000261037.1 lincRNA AC010266.2 2 OTTHUMG00000173439.1 +48610 chr5 HAVANA gene 6030035 6030841 442.0 + 0 ENSG00000259861.1 lincRNA AC010266.1 2 OTTHUMG00000173440.1 +48611 chr5 HAVANA gene 6134303 6137171 2869.0 + 0 ENSG00000278913.1 TEC AC026797.1 2 OTTHUMG00000175444.1 +48612 chr5 HAVANA gene 6289857 6290624 400.0 + 0 ENSG00000250730.2 processed_pseudogene HMGB3P3 1 OTTHUMG00000161681.2 pseudo_consens +48613 chr5 HAVANA gene 6310441 6339884 2923.0 - 0 ENSG00000250490.1 lincRNA LINC02145 1 OTTHUMG00000161679.1 +48614 chr5 HAVANA gene 6371881 6378594 1880.0 - 0 ENSG00000133398.3 protein_coding MED10 2 OTTHUMG00000161682.1 +48615 chr5 HAVANA gene 6448623 6494909 4317.0 + 0 ENSG00000215218.3 protein_coding UBE2QL1 2 OTTHUMG00000161683.1 retrogene +48616 chr5 HAVANA gene 6532891 6533200 310.0 - 0 ENSG00000271230.1 processed_pseudogene AC027334.1 2 OTTHUMG00000184317.1 +48617 chr5 HAVANA gene 6582136 6588499 3518.0 + 0 ENSG00000250056.5 lincRNA LINC01018 2 OTTHUMG00000161680.2 +48618 chr5 HAVANA gene 6599239 6633291 5506.0 - 0 ENSG00000037474.14 protein_coding NSUN2 1 OTTHUMG00000090455.2 +48619 chr5 HAVANA gene 6633343 6674386 7715.0 + 0 ENSG00000145545.11 protein_coding SRD5A1 2 OTTHUMG00000090456.3 +48620 chr5 HAVANA gene 6686325 6707711 3364.0 - 0 ENSG00000248677.1 lincRNA LINC02102 1 OTTHUMG00000161705.1 +48621 chr5 HAVANA gene 6713007 6757048 6785.0 + 0 ENSG00000112941.13 protein_coding TENT4A 2 OTTHUMG00000090457.5 +48622 chr5 HAVANA gene 6779458 6779998 541.0 + 0 ENSG00000272071.1 lincRNA AC122710.3 2 OTTHUMG00000185412.1 +48623 chr5 ENSEMBL gene 6827853 6827921 69.0 - 0 ENSG00000283420.1 miRNA MIR4278 3 +48624 chr5 HAVANA gene 6765891 6833120 2933.0 + 0 ENSG00000251365.2 lincRNA AC122710.2 2 OTTHUMG00000161703.3 +48625 chr5 ENSEMBL gene 6848127 6848462 336.0 - 0 ENSG00000200243.1 misc_RNA RN7SKP79 3 +48626 chr5 HAVANA gene 6868559 6886787 553.0 + 0 ENSG00000250060.1 lincRNA AC122710.1 1 OTTHUMG00000161706.1 +48627 chr5 ENSEMBL gene 7047227 7047336 110.0 + 0 ENSG00000212258.1 rRNA_pseudogene RNA5SP176 3 +48628 chr5 HAVANA gene 6839460 7214054 2351.0 + 0 ENSG00000250974.2 lincRNA LINC02196 2 OTTHUMG00000161651.3 +48629 chr5 ENSEMBL gene 7239781 7240018 238.0 + 0 ENSG00000237611.2 misc_RNA RF00017 3 +48630 chr5 HAVANA gene 7272792 7276923 536.0 + 0 ENSG00000285689.1 lincRNA AC091951.4 2 OTTHUMG00000192649.1 +48631 chr5 HAVANA gene 7287924 7288477 246.0 - 0 ENSG00000248775.1 processed_pseudogene AC091951.2 1 OTTHUMG00000161898.2 pseudo_consens +48632 chr5 HAVANA gene 7299774 7306592 2465.0 - 0 ENSG00000205976.4 unprocessed_pseudogene AC091951.1 1 OTTHUMG00000161905.1 pseudo_consens +48633 chr5 HAVANA gene 7289891 7326609 868.0 + 0 ENSG00000251250.2 transcribed_unprocessed_pseudogene AC091951.3 1 OTTHUMG00000161904.3 +48634 chr5 HAVANA gene 7344579 7345921 564.0 + 0 ENSG00000251678.1 lincRNA AC027343.3 2 OTTHUMG00000161903.1 +48635 chr5 HAVANA gene 7346986 7347977 885.0 - 0 ENSG00000250668.1 lincRNA LINC02123 2 OTTHUMG00000161901.1 +48636 chr5 HAVANA gene 7362979 7364531 407.0 - 0 ENSG00000249638.1 lincRNA AC027343.1 2 OTTHUMG00000161899.1 +48637 chr5 HAVANA gene 7367929 7373074 343.0 - 0 ENSG00000249865.1 antisense AC027343.2 1 OTTHUMG00000161902.1 +48638 chr5 HAVANA gene 7373117 7379790 577.0 + 0 ENSG00000223597.2 lincRNA LINC02142 2 OTTHUMG00000161895.1 +48639 chr5 HAVANA gene 7707802 7749766 522.0 - 0 ENSG00000250761.2 antisense AC093305.1 2 OTTHUMG00000161894.2 +48640 chr5 HAVANA gene 7396208 7830081 17538.0 + 0 ENSG00000078295.16 protein_coding ADCY2 2 OTTHUMG00000090476.5 +48641 chr5 HAVANA gene 7830378 7851490 2385.0 - 0 ENSG00000215217.6 protein_coding C5orf49 1 OTTHUMG00000161897.1 +48642 chr5 HAVANA gene 7859159 7869037 2857.0 - 0 ENSG00000124279.11 protein_coding FASTKD3 2 OTTHUMG00000131029.4 +48643 chr5 HAVANA gene 7851186 7906025 6498.0 + 0 ENSG00000124275.14 protein_coding MTRR 1 OTTHUMG00000090477.3 +48644 chr5 HAVANA gene 7924292 7925398 295.0 + 0 ENSG00000251168.1 lincRNA AC025174.1 2 OTTHUMG00000161900.1 +48645 chr5 ENSEMBL gene 7980146 7980304 159.0 + 0 ENSG00000199773.1 snRNA RNU1-76P 3 +48646 chr5 HAVANA gene 8080186 8080761 576.0 - 0 ENSG00000280338.1 TEC AC091941.1 2 OTTHUMG00000175428.1 +48647 chr5 HAVANA gene 8143618 8143784 167.0 + 0 ENSG00000280251.1 TEC AC091912.2 2 OTTHUMG00000175430.1 +48648 chr5 HAVANA gene 8157541 8157788 248.0 - 0 ENSG00000249486.1 unprocessed_pseudogene AC091912.1 2 OTTHUMG00000161711.1 +48649 chr5 HAVANA gene 8410789 8410996 208.0 - 0 ENSG00000251549.2 unprocessed_pseudogene AC091965.3 2 OTTHUMG00000162187.2 overlapping_locus +48650 chr5 HAVANA gene 8444949 8445535 587.0 - 0 ENSG00000272049.1 lincRNA AC091965.4 2 OTTHUMG00000185686.1 overlapping_locus +48651 chr5 HAVANA gene 8455946 8456558 613.0 - 0 ENSG00000250037.1 unprocessed_pseudogene AC091965.2 2 OTTHUMG00000161713.2 overlapping_locus +48652 chr5 HAVANA gene 8333481 8457558 1587.0 - 0 ENSG00000245729.2 lincRNA LINC02226 2 OTTHUMG00000161709.2 overlapping_locus +48653 chr5 HAVANA gene 8387638 8457564 695.0 - 0 ENSG00000249159.6 lincRNA AC091965.1 2 OTTHUMG00000161712.2 overlapping_locus +48654 chr5 HAVANA gene 8458842 8459183 342.0 + 0 ENSG00000279075.1 TEC AC091965.5 2 OTTHUMG00000185687.1 overlapping_locus +48655 chr5 ENSEMBL gene 8460925 8460999 75.0 + 0 ENSG00000284000.1 miRNA MIR4458 3 +48656 chr5 HAVANA gene 8450743 8463095 4339.0 + 0 ENSG00000247516.6 lincRNA MIR4458HG 1 OTTHUMG00000161710.3 ncRNA_host,overlapping_locus +48657 chr5 HAVANA gene 8525179 8528679 335.0 + 0 ENSG00000249782.1 lincRNA AC027328.1 2 OTTHUMG00000161716.1 +48658 chr5 HAVANA gene 8572047 8572206 160.0 + 0 ENSG00000279097.1 TEC AC091953.2 2 OTTHUMG00000175409.1 +48659 chr5 HAVANA gene 8614356 8614696 341.0 + 0 ENSG00000279264.1 TEC AC091953.4 2 OTTHUMG00000175411.1 +48660 chr5 HAVANA gene 8618581 8619104 524.0 - 0 ENSG00000250389.1 processed_pseudogene MTND6P2 2 OTTHUMG00000161719.1 +48661 chr5 HAVANA gene 8619178 8620310 1133.0 + 0 ENSG00000248765.1 processed_pseudogene MTCYBP37 2 OTTHUMG00000161721.1 +48662 chr5 HAVANA gene 8659764 8660059 296.0 - 0 ENSG00000279002.1 TEC AC091953.1 2 OTTHUMG00000175412.1 +48663 chr5 HAVANA gene 8669018 8669250 233.0 - 0 ENSG00000280373.1 TEC AC091953.5 2 OTTHUMG00000175413.1 +48664 chr5 HAVANA gene 8685581 8685816 236.0 - 0 ENSG00000279125.1 TEC AC091953.3 2 OTTHUMG00000174469.1 +48665 chr5 HAVANA gene 8717684 8717883 200.0 - 0 ENSG00000280438.1 TEC AC091932.4 2 OTTHUMG00000174461.1 +48666 chr5 HAVANA gene 8754869 8755159 291.0 + 0 ENSG00000278877.1 TEC AC091932.2 2 OTTHUMG00000175406.1 +48667 chr5 HAVANA gene 8785042 8785468 427.0 - 0 ENSG00000260981.1 lincRNA AC091932.1 2 OTTHUMG00000173420.1 +48668 chr5 HAVANA gene 8793875 8794197 323.0 + 0 ENSG00000280185.1 TEC AC091932.3 2 OTTHUMG00000175414.1 +48669 chr5 HAVANA gene 8839732 8881525 3543.0 + 0 ENSG00000250198.1 lincRNA LINC02199 2 OTTHUMG00000161722.2 +48670 chr5 HAVANA gene 8980404 8980659 256.0 - 0 ENSG00000279635.1 TEC AC091895.1 2 OTTHUMG00000175427.1 +48671 chr5 HAVANA gene 9001774 9045940 805.0 + 0 ENSG00000250619.1 antisense AC021088.1 2 OTTHUMG00000161752.1 +48672 chr5 ENSEMBL gene 9053816 9053895 80.0 - 0 ENSG00000266415.1 miRNA MIR4636 3 +48673 chr5 HAVANA gene 9363275 9422481 391.0 + 0 ENSG00000248537.1 antisense AC091906.1 2 OTTHUMG00000161754.1 +48674 chr5 HAVANA gene 9498401 9498775 375.0 - 0 ENSG00000279698.1 TEC AC027335.2 2 OTTHUMG00000161720.1 overlapping_locus +48675 chr5 HAVANA gene 9511333 9518086 1679.0 + 0 ENSG00000251370.1 lincRNA SEMA5A-AS1 2 OTTHUMG00000161718.1 +48676 chr5 HAVANA gene 9519853 9523178 543.0 - 0 ENSG00000250001.1 sense_intronic AC027335.1 1 OTTHUMG00000161717.1 overlapping_locus +48677 chr5 HAVANA gene 9035026 9546075 12097.0 - 0 ENSG00000112902.11 protein_coding SEMA5A 2 OTTHUMG00000090501.5 ncRNA_host,overlapping_locus +48678 chr5 ENSEMBL gene 9548836 9548905 70.0 + 0 ENSG00000239112.1 snoRNA SNORD123 3 +48679 chr5 HAVANA gene 9546200 9550609 1951.0 + 0 ENSG00000250786.1 lincRNA SNHG18 2 OTTHUMG00000161753.1 ncRNA_host +48680 chr5 HAVANA gene 9621377 9658458 420.0 - 0 ENSG00000248525.2 sense_overlapping AC026787.1 1 OTTHUMG00000161687.2 overlapping_locus +48681 chr5 HAVANA gene 9628997 9712378 1727.0 - 0 ENSG00000169777.6 protein_coding TAS2R1 2 OTTHUMG00000090500.5 overlapping_locus +48682 chr5 ENSEMBL gene 9760907 9761013 107.0 + 0 ENSG00000222054.1 rRNA_pseudogene RNA5SP177 3 +48683 chr5 HAVANA gene 9854377 9889937 499.0 + 0 ENSG00000250814.1 lincRNA LINC02221 2 OTTHUMG00000161686.2 +48684 chr5 HAVANA gene 9641305 9903826 2487.0 - 0 ENSG00000249781.6 lincRNA LINC02112 1 OTTHUMG00000161688.3 overlapping_locus +48685 chr5 HAVANA gene 10057502 10057807 306.0 + 0 ENSG00000279011.1 TEC AC091905.2 2 OTTHUMG00000175429.1 +48686 chr5 HAVANA gene 10064243 10064476 234.0 - 0 ENSG00000279755.1 TEC AC091905.3 2 OTTHUMG00000173429.1 +48687 chr5 HAVANA gene 10070531 10070841 311.0 + 0 ENSG00000278874.1 TEC AC091905.1 2 OTTHUMG00000175425.1 +48688 chr5 HAVANA gene 10082571 10082772 202.0 + 0 ENSG00000280016.1 TEC AC091905.4 2 OTTHUMG00000173428.1 +48689 chr5 HAVANA gene 10137138 10138365 943.0 + 0 ENSG00000249807.1 lincRNA AC034229.1 2 OTTHUMG00000161773.1 +48690 chr5 HAVANA gene 10168783 10169006 224.0 + 0 ENSG00000280449.1 TEC AC034229.6 2 OTTHUMG00000173464.1 +48691 chr5 HAVANA gene 10171030 10171214 185.0 - 0 ENSG00000280368.1 TEC AC034229.5 2 OTTHUMG00000173466.1 +48692 chr5 HAVANA gene 10195187 10197622 2436.0 - 0 ENSG00000271998.1 lincRNA AC034229.3 2 OTTHUMG00000185435.1 overlapping_locus +48693 chr5 HAVANA gene 10195121 10197628 2508.0 - 0 ENSG00000260515.1 lincRNA AC034229.2 2 OTTHUMG00000173463.1 overlapping_locus +48694 chr5 HAVANA gene 10203600 10204040 441.0 - 0 ENSG00000272417.1 lincRNA AC034229.4 2 OTTHUMG00000185436.1 +48695 chr5 HAVANA gene 10226330 10249897 2462.0 - 0 ENSG00000150756.13 protein_coding FAM173B 2 OTTHUMG00000161771.4 +48696 chr5 HAVANA gene 10248325 10249915 688.0 + 0 ENSG00000248968.1 antisense AC012640.1 2 OTTHUMG00000161772.1 +48697 chr5 HAVANA gene 10249921 10266412 5839.0 + 0 ENSG00000150753.11 protein_coding CCT5 2 OTTHUMG00000131042.7 +48698 chr5 HAVANA gene 10264597 10267146 2550.0 - 0 ENSG00000271980.1 antisense AC012640.4 2 OTTHUMG00000185437.1 +48699 chr5 HAVANA gene 10269489 10269918 430.0 - 0 ENSG00000271715.1 lincRNA AC012640.3 2 OTTHUMG00000185438.1 +48700 chr5 ENSEMBL gene 10292041 10292148 108.0 - 0 ENSG00000252341.1 misc_RNA RF00019 3 +48701 chr5 HAVANA gene 10275875 10308026 3324.0 - 0 ENSG00000164237.8 protein_coding CMBL 2 OTTHUMG00000131043.2 ncRNA_host +48702 chr5 ENSEMBL gene 10337277 10337386 110.0 + 0 ENSG00000252671.1 misc_RNA RF00019 3 +48703 chr5 HAVANA gene 10342813 10343131 319.0 + 0 ENSG00000280369.1 TEC AC012640.5 2 OTTHUMG00000175426.1 +48704 chr5 HAVANA gene 10352701 10353601 901.0 - 0 ENSG00000259802.1 antisense AC012640.2 2 OTTHUMG00000175391.1 +48705 chr5 HAVANA gene 10353703 10440388 11336.0 + 0 ENSG00000145495.15 protein_coding MARCH6 2 OTTHUMG00000162027.4 +48706 chr5 HAVANA gene 10441290 10441792 189.0 - 0 ENSG00000250600.1 antisense ROPN1L-AS1 2 OTTHUMG00000162052.1 +48707 chr5 HAVANA gene 10441524 10472029 1817.0 + 0 ENSG00000145491.11 protein_coding ROPN1L 2 OTTHUMG00000090507.2 +48708 chr5 ENSEMBL gene 10478037 10478145 109.0 + 0 ENSG00000277073.1 miRNA MIR6131 3 +48709 chr5 HAVANA gene 10479371 10482309 483.0 + 0 ENSG00000246016.2 antisense LINC01513 2 OTTHUMG00000162053.1 +48710 chr5 HAVANA gene 10488820 10489142 323.0 + 0 ENSG00000244361.1 processed_pseudogene RPL30P7 1 OTTHUMG00000157613.2 pseudo_consens +48711 chr5 HAVANA gene 10493291 10494094 415.0 - 0 ENSG00000249166.1 lincRNA AC092336.1 1 OTTHUMG00000162054.1 overlapping_locus +48712 chr5 HAVANA gene 10493527 10502728 2130.0 - 0 ENSG00000249396.1 lincRNA LINC02212 2 OTTHUMG00000162051.2 overlapping_locus +48713 chr5 HAVANA gene 10504996 10522084 1103.0 - 0 ENSG00000249160.4 lincRNA LINC02213 1 OTTHUMG00000162049.2 +48714 chr5 HAVANA gene 10541454 10543192 1739.0 + 0 ENSG00000280017.1 TEC AC112200.2 2 OTTHUMG00000186587.1 +48715 chr5 HAVANA gene 10556582 10556815 234.0 + 0 ENSG00000279450.1 TEC AC112200.1 2 OTTHUMG00000175415.1 +48716 chr5 HAVANA gene 10627260 10628225 522.0 - 0 ENSG00000250106.1 antisense ANKRD33B-AS1 2 OTTHUMG00000162124.1 +48717 chr5 HAVANA gene 10652211 10655925 800.0 - 0 ENSG00000251196.1 unprocessed_pseudogene AC106760.1 2 OTTHUMG00000162121.1 +48718 chr5 HAVANA gene 10564330 10657816 9783.0 + 0 ENSG00000164236.11 protein_coding ANKRD33B 1 OTTHUMG00000162050.5 +48719 chr5 HAVANA gene 10664495 10665113 619.0 - 0 ENSG00000251548.1 processed_pseudogene AC106760.2 1 OTTHUMG00000162120.1 pseudo_consens +48720 chr5 HAVANA gene 10675317 10675575 259.0 - 0 ENSG00000279979.1 TEC AC012629.4 2 OTTHUMG00000175423.1 +48721 chr5 HAVANA gene 10676096 10676423 328.0 - 0 ENSG00000278865.1 TEC AC012629.3 2 OTTHUMG00000173430.1 +48722 chr5 HAVANA gene 10679230 10761272 3361.0 - 0 ENSG00000112977.15 protein_coding DAP 1 OTTHUMG00000131041.3 +48723 chr5 HAVANA gene 10761065 10770294 377.0 + 0 ENSG00000272324.5 antisense AC012629.2 2 OTTHUMG00000185440.1 +48724 chr5 HAVANA gene 10775058 10777062 342.0 - 0 ENSG00000250576.1 lincRNA AC012629.1 1 OTTHUMG00000162122.1 +48725 chr5 ENSEMBL gene 11027200 11027307 108.0 + 0 ENSG00000207312.1 snRNA RNU6-429P 3 +48726 chr5 HAVANA gene 10971840 11904043 6863.0 - 0 ENSG00000169862.18 protein_coding CTNND2 2 OTTHUMG00000090511.5 +48727 chr5 ENSEMBL gene 12297399 12297504 106.0 - 0 ENSG00000212305.1 snRNA RNU6-679P 3 +48728 chr5 HAVANA gene 12553890 12574637 372.0 - 0 ENSG00000248783.1 lincRNA AC106771.1 2 OTTHUMG00000161759.1 +48729 chr5 HAVANA gene 12794100 12794731 632.0 - 0 ENSG00000251112.2 processed_pseudogene AC106794.2 2 OTTHUMG00000161743.2 +48730 chr5 HAVANA gene 12794731 12795522 792.0 + 0 ENSG00000249053.1 processed_pseudogene AC106794.1 2 OTTHUMG00000161744.1 overlapping_locus +48731 chr5 HAVANA gene 12574857 12804363 1871.0 + 0 ENSG00000248131.5 lincRNA LINC01194 2 OTTHUMG00000161760.1 overlapping_locus +48732 chr5 HAVANA gene 12914068 13032886 270.0 - 0 ENSG00000248457.1 lincRNA LINC02220 2 OTTHUMG00000161742.1 +48733 chr5 HAVANA gene 13175846 13179572 249.0 + 0 ENSG00000248145.1 lincRNA AC016553.1 2 OTTHUMG00000162193.1 +48734 chr5 HAVANA gene 13250235 13250662 428.0 - 0 ENSG00000242608.1 processed_pseudogene RPS23P5 1 OTTHUMG00000157616.1 pseudo_consens +48735 chr5 HAVANA gene 13553654 13553966 313.0 - 0 ENSG00000248462.1 processed_pseudogene NENFP3 1 OTTHUMG00000161748.1 pseudo_consens +48736 chr5 HAVANA gene 13637919 13638381 463.0 - 0 ENSG00000243744.2 processed_pseudogene AC016546.1 1 OTTHUMG00000157617.2 pseudo_consens +48737 chr5 HAVANA gene 13860303 13900749 3625.0 + 0 ENSG00000251423.2 antisense AC016576.1 1 OTTHUMG00000161749.2 +48738 chr5 HAVANA gene 13690331 13944543 16475.0 - 0 ENSG00000039139.9 protein_coding DNAH5 2 OTTHUMG00000090533.4 +48739 chr5 HAVANA gene 14143702 14532128 17500.0 + 0 ENSG00000038382.19 protein_coding TRIO 1 OTTHUMG00000131057.10 +48740 chr5 HAVANA gene 14581775 14615007 4074.0 + 0 ENSG00000145569.5 protein_coding OTULINL 1 OTTHUMG00000131056.4 +48741 chr5 HAVANA gene 14620020 14621313 1294.0 + 0 ENSG00000248791.1 processed_pseudogene AC010627.1 1 OTTHUMG00000161825.1 pseudo_consens +48742 chr5 HAVANA gene 14639426 14641018 1593.0 - 0 ENSG00000250526.1 processed_pseudogene CCT6P2 1 OTTHUMG00000161827.3 pseudo_consens +48743 chr5 HAVANA gene 14651941 14653329 1389.0 - 0 ENSG00000250182.3 processed_pseudogene EEF1A1P13 2 OTTHUMG00000161826.2 +48744 chr5 HAVANA gene 14661808 14664604 2797.0 - 0 ENSG00000261360.1 antisense AC010491.1 2 OTTHUMG00000174145.1 +48745 chr5 HAVANA gene 14664664 14699711 8614.0 + 0 ENSG00000154124.4 protein_coding OTULIN 2 OTTHUMG00000161762.1 +48746 chr5 HAVANA gene 14797125 14798400 1276.0 - 0 ENSG00000249485.1 processed_pseudogene RBBP4P1 1 OTTHUMG00000161817.1 pseudo_consens,overlapping_locus +48747 chr5 ENSEMBL gene 14825929 14826012 84.0 - 0 ENSG00000264792.1 miRNA MIR4637 3 +48748 chr5 HAVANA gene 14704800 14871785 12702.0 - 0 ENSG00000154122.13 protein_coding ANKH 2 OTTHUMG00000090539.4 ncRNA_host,overlapping_locus +48749 chr5 HAVANA gene 14872332 14872713 382.0 + 0 ENSG00000272057.1 lincRNA AC016575.1 2 OTTHUMG00000185443.1 +48750 chr5 HAVANA gene 14874400 14874711 312.0 - 0 ENSG00000249928.2 processed_pseudogene UQCRBP3 1 OTTHUMG00000161815.2 pseudo_consens +48751 chr5 HAVANA gene 14877667 14877919 253.0 - 0 ENSG00000250662.1 processed_pseudogene HNRNPKP5 1 OTTHUMG00000161816.1 pseudo_consens +48752 chr5 HAVANA gene 14960232 14961393 1162.0 + 0 ENSG00000250247.1 processed_pseudogene SEPHS2P1 1 OTTHUMG00000161763.1 pseudo_consens +48753 chr5 ENSEMBL gene 15110786 15110920 135.0 - 0 ENSG00000202269.1 snoRNA RF00096 3 +48754 chr5 HAVANA gene 15112377 15117007 822.0 - 0 ENSG00000249332.1 lincRNA AC016651.1 1 OTTHUMG00000161792.2 +48755 chr5 HAVANA gene 15192139 15266541 558.0 - 0 ENSG00000248486.1 lincRNA LINC02149 2 OTTHUMG00000161793.1 +48756 chr5 HAVANA gene 15384220 15384853 634.0 + 0 ENSG00000248834.2 processed_pseudogene MARK2P5 1 OTTHUMG00000161794.2 pseudo_consens +48757 chr5 HAVANA gene 15450701 15451811 1111.0 + 0 ENSG00000248699.1 processed_pseudogene AC114964.1 1 OTTHUMG00000161796.1 pseudo_consens +48758 chr5 HAVANA gene 15602189 15607348 632.0 - 0 ENSG00000250250.1 antisense AC010638.1 1 OTTHUMG00000161797.1 +48759 chr5 ENSEMBL gene 15935182 15935260 79.0 + 0 ENSG00000216077.3 miRNA MIR887 3 +48760 chr5 HAVANA gene 15500196 15939795 4854.0 + 0 ENSG00000183580.9 protein_coding FBXL7 2 OTTHUMG00000161798.1 ncRNA_host +48761 chr5 ENSEMBL gene 16033229 16033356 128.0 - 0 ENSG00000222312.1 rRNA_pseudogene RNA5SP178 3 +48762 chr5 HAVANA gene 16129178 16141602 708.0 + 0 ENSG00000250981.1 antisense AC016650.1 1 OTTHUMG00000161791.1 +48763 chr5 HAVANA gene 16067139 16180762 1861.0 - 0 ENSG00000183654.8 protein_coding MARCH11 1 OTTHUMG00000161789.2 +48764 chr5 HAVANA gene 16180238 16185585 2066.0 + 0 ENSG00000250448.1 antisense AC092335.1 2 OTTHUMG00000161785.1 +48765 chr5 HAVANA gene 16192088 16192709 622.0 - 0 ENSG00000248403.1 processed_pseudogene NACAP6 1 OTTHUMG00000161790.2 pseudo_consens +48766 chr5 HAVANA gene 16428536 16432436 458.0 + 0 ENSG00000249737.1 antisense AC020980.1 2 OTTHUMG00000161786.1 +48767 chr5 HAVANA gene 16373361 16440081 2120.0 - 0 ENSG00000248150.1 lincRNA LINC02150 2 OTTHUMG00000161787.1 +48768 chr5 HAVANA gene 16451519 16465792 1699.0 - 0 ENSG00000173545.4 protein_coding ZNF622 2 OTTHUMG00000090567.1 +48769 chr5 HAVANA gene 16473038 16617058 4568.0 - 0 ENSG00000154153.13 protein_coding RETREG1 2 OTTHUMG00000161788.1 +48770 chr5 HAVANA gene 16617225 16621276 704.0 + 0 ENSG00000250415.1 lincRNA AC022113.2 2 OTTHUMG00000161823.1 overlapping_locus +48771 chr5 ENSEMBL gene 16623004 16623095 92.0 - 0 ENSG00000201370.1 misc_RNA RF00019 3 +48772 chr5 HAVANA gene 16615926 16629969 1674.0 + 0 ENSG00000246214.1 antisense AC022113.1 2 OTTHUMG00000161824.1 overlapping_locus +48773 chr5 ENSEMBL gene 16853994 16854114 121.0 + 0 ENSG00000253093.1 rRNA_pseudogene RNA5SP179 3 +48774 chr5 HAVANA gene 16902294 16902641 348.0 - 0 ENSG00000243538.1 processed_pseudogene RPS26P28 1 OTTHUMG00000157620.1 pseudo_consens,overlapping_locus +48775 chr5 HAVANA gene 16661914 16936276 13963.0 - 0 ENSG00000145555.14 protein_coding MYO10 1 OTTHUMG00000161822.4 overlapping_locus +48776 chr5 ENSEMBL gene 16941843 16941951 109.0 - 0 ENSG00000201436.1 snRNA RNU6-660P 3 +48777 chr5 HAVANA gene 17107360 17107789 430.0 - 0 ENSG00000271892.1 lincRNA AC026790.1 2 OTTHUMG00000185444.1 +48778 chr5 ENSEMBL gene 17117576 17117686 111.0 - 0 ENSG00000206814.1 misc_RNA RF00019 3 +48779 chr5 ENSEMBL gene 17156971 17157071 101.0 - 0 ENSG00000251990.1 rRNA_pseudogene RNA5SP180 3 +48780 chr5 HAVANA gene 17202274 17203145 555.0 + 0 ENSG00000250816.1 processed_pseudogene DCAF13P2 1 OTTHUMG00000160375.1 pseudo_consens,overlapping_locus +48781 chr5 HAVANA gene 17130028 17217047 2941.0 - 0 ENSG00000215196.4 antisense BASP1-AS1 2 OTTHUMG00000131059.3 +48782 chr5 ENSEMBL gene 17240611 17240715 105.0 + 0 ENSG00000252908.1 snRNA RNU6-1003P 3 +48783 chr5 HAVANA gene 17065598 17276843 2217.0 + 0 ENSG00000176788.8 protein_coding BASP1 2 OTTHUMG00000131061.7 ncRNA_host,overlapping_locus +48784 chr5 HAVANA gene 17306381 17306960 580.0 + 0 ENSG00000185296.8 processed_pseudogene AC026785.1 1 OTTHUMG00000161867.1 pseudo_consens +48785 chr5 ENSEMBL gene 17345616 17345955 340.0 + 0 ENSG00000201715.1 misc_RNA RN7SKP133 3 +48786 chr5 HAVANA gene 17353695 17354624 930.0 - 0 ENSG00000223361.5 transcribed_processed_pseudogene FTH1P10 1 OTTHUMG00000161872.1 pseudo_consens +48787 chr5 HAVANA gene 17353910 17354899 867.0 + 0 ENSG00000248223.1 lincRNA AC026785.2 2 OTTHUMG00000161870.1 +48788 chr5 HAVANA gene 17369225 17375577 285.0 - 0 ENSG00000249199.1 lincRNA AC026785.3 2 OTTHUMG00000161875.1 +48789 chr5 HAVANA gene 17378906 17387310 2312.0 - 0 ENSG00000250822.1 lincRNA LINC02111 2 OTTHUMG00000161877.1 +48790 chr5 HAVANA gene 17404019 17441694 979.0 + 0 ENSG00000248455.5 lincRNA LINC02217 2 OTTHUMG00000161871.1 +48791 chr5 HAVANA gene 17444010 17486829 1527.0 + 0 ENSG00000249662.6 protein_coding LINC02218 2 OTTHUMG00000161868.3 +48792 chr5 HAVANA gene 17491325 17491769 445.0 - 0 ENSG00000268799.3 protein_coding AC106774.4 2 OTTHUMG00000193380.1 +48793 chr5 HAVANA gene 17495658 17495826 169.0 - 0 ENSG00000250667.1 processed_pseudogene AC106774.3 2 OTTHUMG00000161876.1 +48794 chr5 HAVANA gene 17498231 17498827 597.0 + 0 ENSG00000284373.1 protein_coding TAF11L2 2 OTTHUMG00000161862.2 +48795 chr5 HAVANA gene 17502043 17502363 321.0 - 0 ENSG00000248205.1 processed_pseudogene AC106774.1 2 OTTHUMG00000161878.1 +48796 chr5 HAVANA gene 17511833 17512238 406.0 - 0 ENSG00000249620.1 processed_pseudogene AC106774.2 1 OTTHUMG00000161866.1 pseudo_consens +48797 chr5 HAVANA gene 17518367 17518963 597.0 + 0 ENSG00000284439.1 protein_coding TAF11L3 2 OTTHUMG00000161861.2 +48798 chr5 HAVANA gene 17521801 17522397 597.0 + 0 ENSG00000284283.1 protein_coding TAF11L4 2 OTTHUMG00000161863.2 +48799 chr5 HAVANA gene 17525235 17525831 597.0 + 0 ENSG00000284234.1 protein_coding TAF11L5 2 OTTHUMG00000161865.3 +48800 chr5 HAVANA gene 17528669 17529265 597.0 + 0 ENSG00000284042.1 protein_coding TAF11L6 2 OTTHUMG00000161864.2 +48801 chr5 HAVANA gene 17585162 17585758 597.0 - 0 ENSG00000284465.1 protein_coding TAF11L7 2 OTTHUMG00000161858.2 +48802 chr5 HAVANA gene 17587290 17587523 234.0 - 0 ENSG00000250088.1 processed_pseudogene AC233724.7 2 OTTHUMG00000161850.1 +48803 chr5 HAVANA gene 17590364 17590960 597.0 - 0 ENSG00000283967.1 protein_coding TAF11L8 2 OTTHUMG00000161852.2 +48804 chr5 HAVANA gene 17593798 17594394 597.0 - 0 ENSG00000283988.1 protein_coding TAF11L9 2 OTTHUMG00000161854.2 +48805 chr5 HAVANA gene 17597232 17597828 597.0 - 0 ENSG00000284356.1 protein_coding TAF11L10 2 OTTHUMG00000161857.2 +48806 chr5 HAVANA gene 17598432 17598559 128.0 - 0 ENSG00000248422.1 processed_pseudogene AC233724.3 2 OTTHUMG00000161855.1 +48807 chr5 HAVANA gene 17601882 17602134 253.0 - 0 ENSG00000249282.1 processed_pseudogene AC233724.6 1 OTTHUMG00000161849.1 pseudo_consens +48808 chr5 HAVANA gene 17604177 17605377 1201.0 + 0 ENSG00000283740.1 protein_coding TAF11L11 2 OTTHUMG00000191925.1 retrogene +48809 chr5 HAVANA gene 17610496 17611583 1088.0 + 0 ENSG00000249156.2 protein_coding TAF11L12 2 OTTHUMG00000161851.3 +48810 chr5 HAVANA gene 17614781 17615111 331.0 - 0 ENSG00000271296.1 processed_pseudogene AC233724.11 1 OTTHUMG00000184297.1 pseudo_consens +48811 chr5 HAVANA gene 17620533 17620939 407.0 - 0 ENSG00000250351.1 processed_pseudogene AC233724.8 1 OTTHUMG00000161841.1 pseudo_consens +48812 chr5 HAVANA gene 17625551 17625959 409.0 - 0 ENSG00000250386.1 processed_pseudogene AC233724.9 1 OTTHUMG00000161842.1 pseudo_consens +48813 chr5 HAVANA gene 17632088 17632684 597.0 + 0 ENSG00000283776.1 protein_coding TAF11L13 2 OTTHUMG00000161847.2 +48814 chr5 HAVANA gene 17634460 17635053 594.0 + 0 ENSG00000250782.1 protein_coding TAF11L14 2 OTTHUMG00000161848.2 +48815 chr5 HAVANA gene 17642962 17643228 267.0 - 0 ENSG00000248471.2 processed_pseudogene AC233724.4 2 OTTHUMG00000161845.2 +48816 chr5 HAVANA gene 17647712 17647944 233.0 - 0 ENSG00000248160.1 processed_pseudogene AC233724.1 1 OTTHUMG00000161840.1 pseudo_consens +48817 chr5 HAVANA gene 17649046 17649643 598.0 + 0 ENSG00000248542.2 processed_pseudogene AC233724.5 1 OTTHUMG00000161860.2 pseudo_consens +48818 chr5 HAVANA gene 17654373 17654643 271.0 - 0 ENSG00000248337.1 processed_pseudogene AC233724.2 2 OTTHUMG00000161853.1 +48819 chr5 HAVANA gene 17654870 17655847 978.0 - 0 ENSG00000269466.3 protein_coding H3.Y 2 OTTHUMG00000193381.1 +48820 chr5 HAVANA gene 17669283 17669518 236.0 - 0 ENSG00000274832.1 processed_pseudogene AC233724.12 1 OTTHUMG00000187568.1 pseudo_consens +48821 chr5 HAVANA gene 17670168 17670571 404.0 - 0 ENSG00000250715.1 processed_pseudogene AC233724.10 1 OTTHUMG00000161846.1 pseudo_consens +48822 chr5 HAVANA gene 17684584 17955857 1236.0 + 0 ENSG00000249937.6 lincRNA LINC02223 2 OTTHUMG00000161859.3 +48823 chr5 HAVANA gene 18049232 18049872 641.0 + 0 ENSG00000240785.2 transcribed_processed_pseudogene RPL36AP21 1 OTTHUMG00000157629.2 pseudo_consens +48824 chr5 ENSEMBL gene 18236123 18236196 74.0 + 0 ENSG00000212278.1 snoRNA RF00136 3 +48825 chr5 ENSEMBL gene 18547312 18547605 294.0 + 0 ENSG00000241552.3 misc_RNA RN7SL58P 3 +48826 chr5 HAVANA gene 18704433 18746173 238.0 - 0 ENSG00000248693.1 lincRNA LINC02100 2 OTTHUMG00000161873.1 +48827 chr5 HAVANA gene 18886622 18887095 474.0 - 0 ENSG00000249191.1 processed_pseudogene UBE2V1P12 1 OTTHUMG00000161782.1 pseudo_consens +48828 chr5 HAVANA gene 18893902 18894168 267.0 - 0 ENSG00000249927.1 processed_pseudogene AC025768.1 1 OTTHUMG00000161781.1 pseudo_consens +48829 chr5 HAVANA gene 18908866 18909543 678.0 + 0 ENSG00000249285.1 processed_pseudogene AC114981.1 1 OTTHUMG00000161784.1 pseudo_consens +48830 chr5 ENSEMBL gene 18958147 18958413 267.0 - 0 ENSG00000276764.1 misc_RNA RF00017 3 +48831 chr5 HAVANA gene 19035197 19038799 1157.0 - 0 ENSG00000251487.1 lincRNA AC106744.2 2 OTTHUMG00000161783.1 overlapping_locus +48832 chr5 HAVANA gene 19041009 19041386 378.0 + 0 ENSG00000242654.1 processed_pseudogene RPL32P14 2 OTTHUMG00000157630.1 +48833 chr5 HAVANA gene 18965861 19142346 660.0 - 0 ENSG00000249174.1 lincRNA AC106744.1 2 OTTHUMG00000161808.1 overlapping_locus +48834 chr5 HAVANA gene 19233366 19234487 1122.0 + 0 ENSG00000249557.2 processed_pseudogene HSPD1P15 1 OTTHUMG00000161809.2 pseudo_consens +48835 chr5 HAVANA gene 20158662 20158956 295.0 - 0 ENSG00000248766.2 processed_pseudogene AC093303.1 2 OTTHUMG00000162016.2 overlapping_locus +48836 chr5 HAVANA gene 20304045 20305448 1404.0 - 0 ENSG00000214132.4 processed_pseudogene AC094103.1 1 OTTHUMG00000162014.1 pseudo_consens,overlapping_locus +48837 chr5 HAVANA gene 20305565 20331456 424.0 + 0 ENSG00000249854.1 lincRNA CDH18-AS1 2 OTTHUMG00000162015.2 +48838 chr5 HAVANA gene 19472951 20575873 4853.0 - 0 ENSG00000145526.11 protein_coding CDH18 1 OTTHUMG00000090578.4 overlapping_locus +48839 chr5 HAVANA gene 20612625 20614765 509.0 - 0 ENSG00000249490.1 lincRNA LINC02146 2 OTTHUMG00000162017.1 +48840 chr5 HAVANA gene 20830166 20830947 782.0 - 0 ENSG00000248308.1 processed_pseudogene AC138938.1 1 OTTHUMG00000161952.1 pseudo_consens +48841 chr5 HAVANA gene 20611840 20937691 1926.0 + 0 ENSG00000251629.6 lincRNA LINC02241 2 OTTHUMG00000162067.2 +48842 chr5 HAVANA gene 21196720 21196860 141.0 + 0 ENSG00000248286.1 processed_pseudogene AC140172.1 2 OTTHUMG00000161951.1 +48843 chr5 HAVANA gene 21323873 21341375 5454.0 - 0 ENSG00000249359.2 lincRNA AC093274.1 2 OTTHUMG00000162363.2 +48844 chr5 HAVANA gene 21481327 21484011 2685.0 - 0 ENSG00000233974.3 processed_pseudogene AC138951.1 1 OTTHUMG00000161998.1 pseudo_consens +48845 chr5 HAVANA gene 21493436 21494596 1161.0 + 0 ENSG00000279107.1 TEC AC138951.2 2 OTTHUMG00000186588.1 overlapping_locus +48846 chr5 HAVANA gene 21569755 21570045 291.0 + 0 ENSG00000272130.1 lincRNA AC091946.2 2 OTTHUMG00000185450.1 overlapping_locus +48847 chr5 HAVANA gene 21341833 21589372 6150.0 + 0 ENSG00000183666.16 transcribed_unprocessed_pseudogene GUSBP1 2 OTTHUMG00000161915.4 overlapping_locus +48848 chr5 HAVANA gene 21616262 21779522 852.0 + 0 ENSG00000253766.1 antisense AC091946.1 2 OTTHUMG00000163825.1 +48849 chr5 HAVANA gene 21882585 21884310 1726.0 + 0 ENSG00000213430.6 processed_pseudogene HSPD1P1 1 OTTHUMG00000161914.1 pseudo_consens +48850 chr5 HAVANA gene 22139247 22141468 501.0 - 0 ENSG00000253104.1 sense_intronic AC139497.1 2 OTTHUMG00000163826.1 overlapping_locus +48851 chr5 HAVANA gene 22142352 22152356 1917.0 + 0 ENSG00000168967.14 transcribed_unprocessed_pseudogene PMCHL1 2 OTTHUMG00000090661.4 +48852 chr5 HAVANA gene 22580225 22580819 595.0 - 0 ENSG00000249206.2 processed_pseudogene GCNT1P2 2 OTTHUMG00000161913.2 overlapping_locus +48853 chr5 HAVANA gene 21750673 22853622 5928.0 - 0 ENSG00000154162.14 protein_coding CDH12 2 OTTHUMG00000090591.4 overlapping_locus +48854 chr5 HAVANA gene 23013048 23014527 440.0 + 0 ENSG00000249404.1 lincRNA AC010445.1 1 OTTHUMG00000161916.1 +48855 chr5 HAVANA gene 23262159 23263185 677.0 - 0 ENSG00000250319.1 processed_pseudogene AC010460.2 1 OTTHUMG00000161920.1 pseudo_consens +48856 chr5 ENSEMBL gene 23299155 23299262 108.0 + 0 ENSG00000206912.1 misc_RNA RF00019 3 +48857 chr5 HAVANA gene 23303565 23305143 1579.0 - 0 ENSG00000250332.1 processed_pseudogene AC010460.3 1 OTTHUMG00000161923.1 pseudo_consens +48858 chr5 HAVANA gene 23329427 23329892 466.0 - 0 ENSG00000249289.1 processed_pseudogene AC010460.1 1 OTTHUMG00000161921.1 pseudo_consens +48859 chr5 HAVANA gene 23456468 23456850 383.0 + 0 ENSG00000248591.1 processed_pseudogene AC109445.1 1 OTTHUMG00000161922.1 pseudo_consens +48860 chr5 HAVANA gene 23443586 23528597 4184.0 + 0 ENSG00000164256.10 protein_coding PRDM9 2 OTTHUMG00000161918.3 +48861 chr5 HAVANA gene 23688927 23689386 446.0 + 0 ENSG00000249607.1 processed_pseudogene AC108103.1 1 OTTHUMG00000161917.1 pseudo_consens +48862 chr5 ENSEMBL gene 23972188 23972294 107.0 - 0 ENSG00000252083.1 snoRNA RF00561 3 +48863 chr5 HAVANA gene 23980587 23980938 352.0 + 0 ENSG00000234865.3 transcribed_processed_pseudogene AC026784.1 1 OTTHUMG00000161910.1 pseudo_consens,overlapping_locus +48864 chr5 ENSEMBL gene 23994502 23994603 102.0 - 0 ENSG00000200600.1 misc_RNA RF00019 3 +48865 chr5 HAVANA gene 24170370 24171246 877.0 + 0 ENSG00000226432.3 processed_pseudogene AC010342.1 1 OTTHUMG00000161912.1 pseudo_consens,overlapping_locus +48866 chr5 HAVANA gene 23951348 24178263 1984.0 + 0 ENSG00000248874.5 lincRNA C5orf17 2 OTTHUMG00000161911.1 overlapping_locus +48867 chr5 HAVANA gene 24352309 24353443 487.0 - 0 ENSG00000250694.1 lincRNA AC010387.1 2 OTTHUMG00000161885.1 +48868 chr5 ENSEMBL gene 24449351 24449615 265.0 - 0 ENSG00000277455.1 misc_RNA RF00017 3 +48869 chr5 HAVANA gene 24578294 24578561 268.0 - 0 ENSG00000249562.1 processed_pseudogene AC091885.1 2 OTTHUMG00000161950.1 overlapping_locus +48870 chr5 HAVANA gene 24554018 24613222 1791.0 + 0 ENSG00000251294.1 antisense AC091885.2 2 OTTHUMG00000161879.1 +48871 chr5 HAVANA gene 24487100 24644978 3660.0 - 0 ENSG00000040731.10 protein_coding CDH10 2 OTTHUMG00000090667.2 overlapping_locus +48872 chr5 HAVANA gene 24749374 24749772 399.0 - 0 ENSG00000250099.1 processed_pseudogene AC091893.1 1 OTTHUMG00000161886.1 pseudo_consens +48873 chr5 HAVANA gene 24786842 24787024 183.0 - 0 ENSG00000248156.2 processed_pseudogene BTG4P1 1 OTTHUMG00000161888.2 pseudo_consens +48874 chr5 ENSEMBL gene 24811481 24811548 68.0 + 0 ENSG00000223004.1 snoRNA RF00070 3 +48875 chr5 HAVANA gene 24835280 24840583 2290.0 - 0 ENSG00000248908.1 lincRNA LINC02239 2 OTTHUMG00000161889.1 +48876 chr5 HAVANA gene 24881943 24885461 572.0 - 0 ENSG00000250524.1 lincRNA AC106821.1 1 OTTHUMG00000161887.1 +48877 chr5 ENSEMBL gene 24910594 24910695 102.0 + 0 ENSG00000199911.1 misc_RNA RF00019 3 +48878 chr5 HAVANA gene 25188059 25188778 720.0 - 0 ENSG00000285042.1 lincRNA AC099499.2 2 OTTHUMG00000161956.3 +48879 chr5 HAVANA gene 25087450 25190956 3875.0 - 0 ENSG00000251273.3 lincRNA LINC02228 2 OTTHUMG00000192362.1 +48880 chr5 HAVANA gene 25218973 25298612 558.0 - 0 ENSG00000251654.2 lincRNA AC099499.1 2 OTTHUMG00000161962.2 +48881 chr5 HAVANA gene 25319834 25321346 1513.0 + 0 ENSG00000260761.1 lincRNA AC106754.1 2 OTTHUMG00000161957.2 +48882 chr5 HAVANA gene 25187800 25324386 4807.0 + 0 ENSG00000245662.3 lincRNA LINC02211 2 OTTHUMG00000161960.2 +48883 chr5 HAVANA gene 25349841 25350073 233.0 + 0 ENSG00000279671.1 TEC AC106754.2 2 OTTHUMG00000161958.1 +48884 chr5 HAVANA gene 25425412 25425599 188.0 - 0 ENSG00000279531.1 TEC AC022140.2 2 OTTHUMG00000161955.1 overlapping_locus +48885 chr5 HAVANA gene 25404733 25445925 1154.0 - 0 ENSG00000248605.5 lincRNA AC022140.1 2 OTTHUMG00000161959.1 overlapping_locus +48886 chr5 ENSEMBL gene 25701217 25701324 108.0 - 0 ENSG00000201016.1 snRNA RNU6-374P 3 +48887 chr5 HAVANA gene 25716271 25716715 445.0 + 0 ENSG00000279869.1 TEC AC022418.1 2 OTTHUMG00000161963.1 +48888 chr5 HAVANA gene 25909503 25911234 1732.0 + 0 ENSG00000251593.1 processed_pseudogene MSNP1 1 OTTHUMG00000161961.1 pseudo_consens +48889 chr5 ENSEMBL gene 26012889 26013025 137.0 + 0 ENSG00000222560.1 snRNA RNU4-43P 3 +48890 chr5 HAVANA gene 26382519 26399819 487.0 - 0 ENSG00000249099.1 lincRNA AC025475.1 2 OTTHUMG00000161971.1 +48891 chr5 HAVANA gene 26669346 26669736 391.0 + 0 ENSG00000230571.2 processed_pseudogene AC113347.1 2 OTTHUMG00000161965.1 +48892 chr5 HAVANA gene 26669711 26669989 279.0 - 0 ENSG00000248426.1 processed_pseudogene AC113347.2 2 OTTHUMG00000161966.1 +48893 chr5 HAVANA gene 26670334 26670481 148.0 - 0 ENSG00000250703.1 processed_pseudogene AC113347.3 2 OTTHUMG00000161969.1 +48894 chr5 HAVANA gene 26739753 26741183 1431.0 - 0 ENSG00000249616.1 processed_pseudogene CCNB3P1 1 OTTHUMG00000161967.1 pseudo_consens,overlapping_locus +48895 chr5 HAVANA gene 26711551 26749997 685.0 - 0 ENSG00000251033.1 lincRNA AC113347.4 2 OTTHUMG00000161970.1 overlapping_locus +48896 chr5 ENSEMBL gene 27111569 27111674 106.0 + 0 ENSG00000207261.1 snRNA RNU6-738P 3 +48897 chr5 HAVANA gene 26880600 27121150 4203.0 - 0 ENSG00000113100.9 protein_coding CDH9 2 OTTHUMG00000090671.3 +48898 chr5 HAVANA gene 27412613 27436411 491.0 - 0 ENSG00000248490.1 lincRNA AC113355.1 2 OTTHUMG00000161964.1 +48899 chr5 HAVANA gene 27472292 27496401 2638.0 + 0 ENSG00000250337.5 lincRNA PURPL 2 OTTHUMG00000161968.1 +48900 chr5 HAVANA gene 28213359 28214559 1201.0 - 0 ENSG00000250079.1 processed_pseudogene AC093300.1 1 OTTHUMG00000161924.1 pseudo_consens +48901 chr5 HAVANA gene 28286389 28287665 523.0 - 0 ENSG00000249785.1 lincRNA LINC02103 2 OTTHUMG00000161925.2 +48902 chr5 ENSEMBL gene 28624657 28624763 107.0 + 0 ENSG00000252867.1 snRNA RNU6-909P 3 +48903 chr5 HAVANA gene 28782678 28809249 452.0 - 0 ENSG00000250453.1 lincRNA AC008825.1 2 OTTHUMG00000161934.1 +48904 chr5 HAVANA gene 28808538 28809255 718.0 + 0 ENSG00000270495.1 processed_pseudogene AC008825.2 1 OTTHUMG00000184561.1 pseudo_consens +48905 chr5 HAVANA gene 28897785 28898274 490.0 - 0 ENSG00000271035.1 processed_pseudogene AC010385.2 1 OTTHUMG00000184302.1 pseudo_consens +48906 chr5 HAVANA gene 28926816 28927023 208.0 + 0 ENSG00000162685.6 processed_pseudogene LSP1P3 1 OTTHUMG00000161933.1 pseudo_consens +48907 chr5 HAVANA gene 28927029 28927284 256.0 + 0 ENSG00000226400.2 processed_pseudogene AC010385.1 2 OTTHUMG00000161935.1 +48908 chr5 HAVANA gene 28927298 28927459 162.0 - 0 ENSG00000277878.1 processed_pseudogene AC010385.3 2 OTTHUMG00000187570.1 +48909 chr5 HAVANA gene 29001760 29003357 1027.0 + 0 ENSG00000249226.1 processed_pseudogene SUCLG2P4 1 OTTHUMG00000160376.1 pseudo_consens +48910 chr5 ENSEMBL gene 29070496 29070610 115.0 + 0 ENSG00000252601.1 snoRNA RF00425 3 +48911 chr5 HAVANA gene 29104880 29105438 263.0 + 0 ENSG00000248687.2 unprocessed_pseudogene AC024589.1 2 OTTHUMG00000161932.2 +48912 chr5 HAVANA gene 29105568 29106861 1294.0 - 0 ENSG00000270430.1 processed_pseudogene AC024589.2 1 OTTHUMG00000184303.1 pseudo_consens +48913 chr5 HAVANA gene 29143503 29217115 2816.0 + 0 ENSG00000259786.6 lincRNA LINC02109 2 OTTHUMG00000161936.3 +48914 chr5 HAVANA gene 29380296 29395981 671.0 - 0 ENSG00000248391.5 lincRNA LINC02064 2 OTTHUMG00000161939.2 +48915 chr5 HAVANA gene 29516005 29516504 500.0 + 0 ENSG00000276098.1 processed_pseudogene AC027345.1 1 OTTHUMG00000187572.1 pseudo_consens +48916 chr5 HAVANA gene 29600676 29600868 193.0 + 0 ENSG00000248418.2 processed_pseudogene UBL5P1 1 OTTHUMG00000161938.3 pseudo_consens +48917 chr5 HAVANA gene 29795938 29796268 331.0 + 0 ENSG00000250984.1 processed_pseudogene AC108082.1 1 OTTHUMG00000161946.1 pseudo_consens +48918 chr5 HAVANA gene 29848684 29849218 535.0 - 0 ENSG00000249744.1 processed_pseudogene AC010374.2 1 OTTHUMG00000161945.1 pseudo_consens +48919 chr5 HAVANA gene 29881709 29882945 1237.0 - 0 ENSG00000233787.3 processed_pseudogene AC010374.1 2 OTTHUMG00000161947.2 +48920 chr5 ENSEMBL gene 29948828 29949130 303.0 + 0 ENSG00000223136.1 misc_RNA RN7SKP207 3 +48921 chr5 HAVANA gene 29979669 29983114 3446.0 + 0 ENSG00000280305.1 TEC AC018765.1 2 OTTHUMG00000173436.1 +48922 chr5 HAVANA gene 30248350 30248893 544.0 + 0 ENSG00000250587.2 processed_pseudogene HPRT1P2 1 OTTHUMG00000161944.2 pseudo_consens +48923 chr5 HAVANA gene 30365405 30365684 280.0 - 0 ENSG00000250118.1 processed_pseudogene AC114300.1 1 OTTHUMG00000161943.1 pseudo_consens +48924 chr5 HAVANA gene 31053565 31054153 589.0 + 0 ENSG00000241668.2 processed_pseudogene RPL19P11 1 OTTHUMG00000157639.2 pseudo_consens +48925 chr5 HAVANA gene 31065970 31066132 163.0 - 0 ENSG00000253940.1 processed_pseudogene AC026421.1 2 OTTHUMG00000163620.1 +48926 chr5 HAVANA gene 31249879 31250987 1109.0 + 0 ENSG00000250482.3 processed_pseudogene DUX4L51 1 OTTHUMG00000161975.3 pseudo_consens,overlapping_locus +48927 chr5 HAVANA gene 31093977 31267610 381.0 - 0 ENSG00000254138.1 antisense AC113386.1 2 OTTHUMG00000163621.1 +48928 chr5 HAVANA gene 31193750 31329146 12379.0 + 0 ENSG00000113361.12 protein_coding CDH6 2 OTTHUMG00000090673.2 overlapping_locus +48929 chr5 ENSEMBL gene 31505684 31505788 105.0 + 0 ENSG00000206682.1 misc_RNA RF00019 3 +48930 chr5 HAVANA gene 31400497 31532196 7780.0 - 0 ENSG00000113360.16 protein_coding DROSHA 1 OTTHUMG00000161976.6 +48931 chr5 HAVANA gene 31532266 31555058 4172.0 + 0 ENSG00000082213.17 protein_coding C5orf22 1 OTTHUMG00000131067.4 +48932 chr5 HAVANA gene 31558573 31559875 1303.0 + 0 ENSG00000279923.1 TEC AC022417.1 2 OTTHUMG00000175435.1 +48933 chr5 ENSEMBL gene 31595565 31595669 105.0 - 0 ENSG00000199765.1 snRNA RNU6-363P 3 +48934 chr5 HAVANA gene 31657218 31665067 543.0 + 0 ENSG00000248624.1 sense_intronic AC022447.2 1 OTTHUMG00000162179.1 overlapping_locus +48935 chr5 HAVANA gene 31725539 31725902 364.0 - 0 ENSG00000248878.1 transcribed_processed_pseudogene AC022447.4 2 OTTHUMG00000161972.2 +48936 chr5 HAVANA gene 31738269 31738660 392.0 + 0 ENSG00000249114.1 sense_intronic AC022447.5 2 OTTHUMG00000162516.1 overlapping_locus +48937 chr5 HAVANA gene 31741833 31742327 495.0 - 0 ENSG00000248813.1 lincRNA AC022447.3 2 OTTHUMG00000162515.1 +48938 chr5 HAVANA gene 31743988 31744451 464.0 - 0 ENSG00000248378.1 lincRNA AC022447.1 2 OTTHUMG00000162517.1 +48939 chr5 HAVANA gene 31747644 31748078 435.0 - 0 ENSG00000250164.1 lincRNA AC022447.7 2 OTTHUMG00000162519.1 +48940 chr5 HAVANA gene 31754219 31754656 438.0 + 0 ENSG00000249688.1 sense_intronic AC022447.6 2 OTTHUMG00000162518.1 overlapping_locus +48941 chr5 ENSEMBL gene 31820564 31820638 75.0 - 0 ENSG00000252373.1 snRNA RNU6-358P 3 +48942 chr5 HAVANA gene 31822561 31823136 576.0 - 0 ENSG00000224282.3 processed_pseudogene AC010469.1 1 OTTHUMG00000157644.1 pseudo_consens +48943 chr5 ENSEMBL gene 31832439 31832535 97.0 + 0 ENSG00000251887.2 snRNA RNU6-760P 3 +48944 chr5 HAVANA gene 31840492 31840971 480.0 - 0 ENSG00000241739.1 processed_pseudogene AC010469.2 1 OTTHUMG00000157645.1 pseudo_consens +48945 chr5 HAVANA gene 31847271 31848148 878.0 + 0 ENSG00000243914.1 processed_pseudogene RPL5P14 1 OTTHUMG00000157661.1 pseudo_consens,overlapping_locus +48946 chr5 HAVANA gene 31908361 31909186 521.0 + 0 ENSG00000214108.4 processed_pseudogene TPT1P5 1 OTTHUMG00000160377.1 pseudo_consens,overlapping_locus +48947 chr5 HAVANA gene 31923367 31923532 166.0 + 0 ENSG00000249774.1 processed_pseudogene AC025458.1 1 OTTHUMG00000161995.1 pseudo_consens,overlapping_locus +48948 chr5 ENSEMBL gene 31936102 31936159 58.0 - 0 ENSG00000266243.1 miRNA MIR4279 3 +48949 chr5 HAVANA gene 31639410 32110931 15642.0 + 0 ENSG00000133401.15 protein_coding PDZD2 2 OTTHUMG00000161981.6 ncRNA_host,overlapping_locus +48950 chr5 HAVANA gene 32103445 32121941 834.0 - 0 ENSG00000250764.1 antisense AC025178.1 2 OTTHUMG00000162178.1 +48951 chr5 ENSEMBL gene 32134738 32134834 97.0 + 0 ENSG00000200065.1 misc_RNA RF00019 3 +48952 chr5 HAVANA gene 32124704 32174350 2785.0 - 0 ENSG00000113384.13 protein_coding GOLPH3 2 OTTHUMG00000090679.3 +48953 chr5 HAVANA gene 32174471 32175272 802.0 + 0 ENSG00000272086.1 lincRNA AC025181.2 2 OTTHUMG00000185453.1 +48954 chr5 HAVANA gene 32221932 32222347 416.0 + 0 ENSG00000230829.3 processed_pseudogene AC025181.1 1 OTTHUMG00000157663.1 pseudo_consens +48955 chr5 ENSEMBL gene 32234766 32234875 110.0 - 0 ENSG00000199731.1 snRNA RNU6-1079P 3 +48956 chr5 ENSEMBL gene 32309662 32309768 107.0 + 0 ENSG00000207052.1 snRNA RNU6-378P 3 +48957 chr5 HAVANA gene 32226994 32313009 5545.0 - 0 ENSG00000150712.10 protein_coding MTMR12 2 OTTHUMG00000161978.1 ncRNA_host +48958 chr5 ENSEMBL gene 32394378 32394475 98.0 - 0 ENSG00000207956.1 miRNA MIR579 3 +48959 chr5 HAVANA gene 32354350 32444761 6792.0 - 0 ENSG00000056097.15 protein_coding ZFR 2 OTTHUMG00000161979.1 ncRNA_host +48960 chr5 HAVANA gene 32522758 32523865 1108.0 + 0 ENSG00000249142.1 processed_pseudogene AC074134.1 1 OTTHUMG00000161977.1 pseudo_consens +48961 chr5 HAVANA gene 32531633 32604079 9324.0 + 0 ENSG00000113387.11 protein_coding SUB1 2 OTTHUMG00000131071.4 +48962 chr5 HAVANA gene 32646564 32651976 335.0 - 0 ENSG00000250885.1 lincRNA LINC02061 2 OTTHUMG00000162001.1 +48963 chr5 HAVANA gene 32689070 32791724 9866.0 + 0 ENSG00000113389.15 protein_coding NPR3 1 OTTHUMG00000150316.9 +48964 chr5 HAVANA gene 32887990 32888145 156.0 - 0 ENSG00000251062.1 processed_pseudogene AC025459.1 1 OTTHUMG00000162004.1 pseudo_consens +48965 chr5 HAVANA gene 32947443 32962467 2008.0 + 0 ENSG00000248279.5 lincRNA LINC02120 2 OTTHUMG00000162007.1 +48966 chr5 HAVANA gene 33011322 33017607 425.0 - 0 ENSG00000251281.1 lincRNA AC034223.2 2 OTTHUMG00000162005.1 overlapping_locus +48967 chr5 HAVANA gene 33008994 33025724 599.0 + 0 ENSG00000249102.1 lincRNA AC034223.1 1 OTTHUMG00000162000.2 +48968 chr5 HAVANA gene 33090126 33090349 224.0 - 0 ENSG00000250672.1 processed_pseudogene AC010343.2 1 OTTHUMG00000162018.1 pseudo_consens,overlapping_locus +48969 chr5 HAVANA gene 33162179 33162807 629.0 + 0 ENSG00000240376.1 processed_pseudogene AC010343.1 1 OTTHUMG00000157664.1 pseudo_consens +48970 chr5 HAVANA gene 33229735 33255553 517.0 + 0 ENSG00000251443.1 lincRNA LINC02160 2 OTTHUMG00000162002.1 +48971 chr5 HAVANA gene 32925639 33297910 979.0 - 0 ENSG00000250697.1 lincRNA AC010343.3 2 OTTHUMG00000162006.1 overlapping_locus +48972 chr5 HAVANA gene 33424025 33440619 537.0 - 0 ENSG00000249572.1 antisense AC034231.1 1 OTTHUMG00000162003.1 +48973 chr5 HAVANA gene 33440696 33469539 5718.0 + 0 ENSG00000113407.13 protein_coding TARS 1 OTTHUMG00000090683.4 +48974 chr5 HAVANA gene 33502072 33503135 1064.0 + 0 ENSG00000249360.1 processed_pseudogene AC034232.1 1 OTTHUMG00000162159.1 pseudo_consens +48975 chr5 HAVANA gene 33519616 33522230 917.0 - 0 ENSG00000250583.1 lincRNA AC034232.2 2 OTTHUMG00000162158.1 +48976 chr5 ENSEMBL gene 33888056 33888162 107.0 - 0 ENSG00000201623.1 snRNA RNU6-923P 3 +48977 chr5 HAVANA gene 33523535 33892192 9778.0 - 0 ENSG00000151388.10 protein_coding ADAMTS12 2 OTTHUMG00000162088.4 ncRNA_host +48978 chr5 HAVANA gene 33936386 33938237 1852.0 + 0 ENSG00000182631.6 protein_coding RXFP3 2 OTTHUMG00000090685.1 retrogene +48979 chr5 HAVANA gene 33970863 33972628 1145.0 + 0 ENSG00000250914.1 processed_pseudogene AC139783.2 1 OTTHUMG00000160380.1 pseudo_consens +48980 chr5 HAVANA gene 33944616 33984730 3267.0 - 0 ENSG00000164175.14 protein_coding SLC45A2 2 OTTHUMG00000090719.5 +48981 chr5 HAVANA gene 33997044 33997724 681.0 - 0 ENSG00000250767.1 processed_pseudogene AC139783.1 2 OTTHUMG00000162528.1 overlapping_locus +48982 chr5 HAVANA gene 33986178 34008108 4838.0 - 0 ENSG00000242110.7 protein_coding AMACR 1 OTTHUMG00000090734.2 overlapping_locus +48983 chr5 HAVANA gene 34019448 34043832 3576.0 - 0 ENSG00000082196.20 protein_coding C1QTNF3 2 OTTHUMG00000090735.5 overlapping_locus +48984 chr5 HAVANA gene 34105750 34106336 587.0 - 0 ENSG00000278900.1 TEC AC139792.2 2 OTTHUMG00000162375.1 overlapping_locus +48985 chr5 HAVANA gene 34124162 34124385 224.0 - 0 ENSG00000279995.1 TEC AC139792.3 2 OTTHUMG00000162376.1 overlapping_locus +48986 chr5 HAVANA gene 33987174 34124528 3424.0 - 0 ENSG00000273294.1 protein_coding C1QTNF3-AMACR 2 OTTHUMG00000186337.1 overlapping_locus +48987 chr5 HAVANA gene 34158121 34158767 647.0 + 0 ENSG00000271771.1 lincRNA AC139792.1 2 OTTHUMG00000185454.1 +48988 chr5 HAVANA gene 34190056 34193653 3598.0 + 0 ENSG00000215156.5 processed_pseudogene AC138409.1 1 OTTHUMG00000162182.2 pseudo_consens +48989 chr5 HAVANA gene 34164698 34244796 6571.0 - 0 ENSG00000215158.9 transcribed_unprocessed_pseudogene AC138409.2 2 OTTHUMG00000162181.1 +48990 chr5 HAVANA gene 34373028 34373850 823.0 + 0 ENSG00000249380.1 processed_pseudogene AC138853.1 1 OTTHUMG00000161996.1 pseudo_consens +48991 chr5 HAVANA gene 34651457 34651888 432.0 - 0 ENSG00000271874.1 lincRNA AC025754.2 2 OTTHUMG00000185458.1 +48992 chr5 HAVANA gene 34656412 34657250 407.0 - 0 ENSG00000250234.1 antisense AC025754.1 1 OTTHUMG00000162022.1 +48993 chr5 HAVANA gene 34656237 34832627 7687.0 + 0 ENSG00000039560.13 protein_coding RAI14 2 OTTHUMG00000162019.3 +48994 chr5 HAVANA gene 34837549 34839278 1565.0 - 0 ENSG00000272323.1 antisense AC026801.2 2 OTTHUMG00000185459.1 +48995 chr5 HAVANA gene 34860783 34861506 425.0 - 0 ENSG00000250140.1 processed_pseudogene AC026801.1 1 OTTHUMG00000157666.2 pseudo_consens +48996 chr5 HAVANA gene 34883057 34883520 464.0 + 0 ENSG00000241829.1 processed_pseudogene RPL21P54 1 OTTHUMG00000162023.1 pseudo_consens,overlapping_locus +48997 chr5 HAVANA gene 34838833 34899456 4289.0 + 0 ENSG00000205838.14 protein_coding TTC23L 2 OTTHUMG00000162020.2 overlapping_locus +48998 chr5 HAVANA gene 34905264 34918989 6766.0 - 0 ENSG00000113456.18 protein_coding RAD1 2 OTTHUMG00000090783.3 +48999 chr5 HAVANA gene 34915376 34925996 5011.0 + 0 ENSG00000113460.12 protein_coding BRIX1 2 OTTHUMG00000162021.2 +49000 chr5 HAVANA gene 34929559 34958964 9556.0 + 0 ENSG00000168724.16 protein_coding DNAJC21 2 OTTHUMG00000074103.7 +49001 chr5 HAVANA gene 34998101 35048135 3952.0 - 0 ENSG00000113492.13 protein_coding AGXT2 2 OTTHUMG00000090788.2 +49002 chr5 HAVANA gene 35081223 35081992 456.0 + 0 ENSG00000250886.1 processed_pseudogene AC010368.1 1 OTTHUMG00000159986.2 pseudo_consens +49003 chr5 HAVANA gene 35048756 35230589 13108.0 - 0 ENSG00000113494.16 protein_coding PRLR 2 OTTHUMG00000090789.6 +49004 chr5 ENSEMBL gene 35429064 35429277 214.0 + 0 ENSG00000201368.2 snoRNA RF00012 3 +49005 chr5 ENSEMBL gene 35632963 35633024 62.0 - 0 ENSG00000238441.1 snRNA RNU7-130P 3 +49006 chr5 HAVANA gene 35617844 35814611 16140.0 + 0 ENSG00000152582.13 protein_coding SPEF2 1 OTTHUMG00000131111.5 +49007 chr5 HAVANA gene 35678484 35827018 540.0 - 0 ENSG00000248969.1 antisense AC137810.1 2 OTTHUMG00000162095.1 +49008 chr5 HAVANA gene 35852695 35879603 6060.0 + 0 ENSG00000168685.14 protein_coding IL7R 1 OTTHUMG00000090791.5 +49009 chr5 HAVANA gene 35895689 35896020 332.0 - 0 ENSG00000279737.1 TEC AC112204.3 2 OTTHUMG00000162093.1 +49010 chr5 HAVANA gene 35896188 35896290 103.0 - 0 ENSG00000248349.1 processed_pseudogene AC112204.1 2 OTTHUMG00000162096.1 +49011 chr5 HAVANA gene 35904295 35938779 1135.0 - 0 ENSG00000152611.11 protein_coding CAPSL 2 OTTHUMG00000131109.4 +49012 chr5 HAVANA gene 35938822 35939993 374.0 + 0 ENSG00000249748.1 antisense AC112204.2 1 OTTHUMG00000162092.1 +49013 chr5 HAVANA gene 35951010 36001028 8485.0 - 0 ENSG00000145626.11 protein_coding UGT3A1 1 OTTHUMG00000131107.5 +49014 chr5 HAVANA gene 36035017 36071358 2694.0 - 0 ENSG00000168671.9 protein_coding UGT3A2 1 OTTHUMG00000131108.3 +49015 chr5 HAVANA gene 36071791 36072079 289.0 - 0 ENSG00000251591.2 processed_pseudogene AC016612.1 2 OTTHUMG00000162094.2 +49016 chr5 ENSEMBL gene 36147892 36147988 97.0 - 0 ENSG00000207756.1 miRNA MIR580 3 +49017 chr5 HAVANA gene 36098412 36151961 8421.0 - 0 ENSG00000164187.6 protein_coding LMBRD2 2 OTTHUMG00000162150.1 ncRNA_host +49018 chr5 ENSEMBL gene 36155119 36155222 104.0 + 0 ENSG00000201223.1 snRNA RNU6-1305P 3 +49019 chr5 HAVANA gene 36151989 36184319 3837.0 + 0 ENSG00000145604.15 protein_coding SKP2 2 OTTHUMG00000131106.8 ncRNA_host +49020 chr5 HAVANA gene 36221055 36221902 720.0 + 0 ENSG00000245711.2 antisense NADK2-AS1 2 OTTHUMG00000162149.1 +49021 chr5 HAVANA gene 36192592 36242279 4885.0 - 0 ENSG00000152620.12 protein_coding NADK2 1 OTTHUMG00000131105.5 +49022 chr5 HAVANA gene 36248434 36302114 3363.0 - 0 ENSG00000164188.8 protein_coding RANBP3L 2 OTTHUMG00000131110.3 +49023 chr5 ENSEMBL gene 36485343 36485440 98.0 + 0 ENSG00000222178.1 rRNA_pseudogene RNA5SP181 3 +49024 chr5 HAVANA gene 36588506 36588661 156.0 + 0 ENSG00000242292.2 processed_pseudogene AC010631.1 1 OTTHUMG00000157669.2 pseudo_consens +49025 chr5 HAVANA gene 36636019 36649347 396.0 - 0 ENSG00000274441.1 antisense AC008957.2 2 OTTHUMG00000188130.1 +49026 chr5 HAVANA gene 36667717 36669958 2242.0 + 0 ENSG00000279400.1 TEC AC008957.3 2 OTTHUMG00000188131.1 +49027 chr5 HAVANA gene 36606355 36688334 6265.0 + 0 ENSG00000079215.13 protein_coding SLC1A3 2 OTTHUMG00000090793.3 +49028 chr5 HAVANA gene 36666214 36725195 1159.0 - 0 ENSG00000250155.1 antisense AC008957.1 2 OTTHUMG00000162032.1 +49029 chr5 HAVANA gene 36861736 36867238 2237.0 - 0 ENSG00000272103.2 lincRNA AC026741.1 2 OTTHUMG00000185469.2 overlapping_locus +49030 chr5 HAVANA gene 36864425 36876700 6939.0 - 0 ENSG00000285967.1 bidirectional_promoter_lncRNA NIPBL-DT 2 OTTHUMG00000162033.3 overlapping_locus +49031 chr5 HAVANA gene 36885206 36886497 1292.0 + 0 ENSG00000249850.1 processed_pseudogene KRT18P31 1 OTTHUMG00000162026.1 pseudo_consens,overlapping_locus +49032 chr5 HAVANA gene 36876759 37066413 12529.0 + 0 ENSG00000164190.17 protein_coding NIPBL 1 OTTHUMG00000090795.4 overlapping_locus +49033 chr5 HAVANA gene 37085056 37085852 797.0 + 0 ENSG00000244073.1 processed_pseudogene RPS4XP6 1 OTTHUMG00000157671.1 pseudo_consens +49034 chr5 HAVANA gene 37130430 37130700 271.0 + 0 ENSG00000271378.1 processed_pseudogene C8orf59P2 1 OTTHUMG00000184568.1 pseudo_consens +49035 chr5 HAVANA gene 37209364 37212381 3018.0 + 0 ENSG00000228212.1 processed_pseudogene OFD1P17 1 OTTHUMG00000162066.1 pseudo_consens +49036 chr5 ENSEMBL gene 37246173 37246479 307.0 - 0 ENSG00000242493.3 misc_RNA RN7SL37P 3 +49037 chr5 HAVANA gene 37106228 37249428 15146.0 - 0 ENSG00000197603.13 protein_coding CPLANE1 2 OTTHUMG00000160492.2 ncRNA_host +49038 chr5 HAVANA gene 37286449 37286977 529.0 - 0 ENSG00000270558.1 processed_pseudogene AC025449.1 1 OTTHUMG00000184305.1 pseudo_consens +49039 chr5 ENSEMBL gene 37327135 37327196 62.0 + 0 ENSG00000251880.1 snRNA RNU7-75P 3 +49040 chr5 HAVANA gene 37288137 37371181 9233.0 - 0 ENSG00000113569.15 protein_coding NUP155 2 OTTHUMG00000090803.3 +49041 chr5 HAVANA gene 37377049 37377971 323.0 + 0 ENSG00000250455.1 unprocessed_pseudogene AC117532.1 2 OTTHUMG00000162262.1 +49042 chr5 HAVANA gene 37505688 37506857 1170.0 - 0 ENSG00000248216.1 processed_pseudogene KCTD9P5 1 OTTHUMG00000162264.1 pseudo_consens +49043 chr5 ENSEMBL gene 37619985 37620088 104.0 - 0 ENSG00000222743.1 snRNA RNU6-1190P 3 +49044 chr5 ENSEMBL gene 37700331 37700437 107.0 - 0 ENSG00000206743.1 snRNA RNU6-484P 3 +49045 chr5 HAVANA gene 37379212 37753435 7039.0 + 0 ENSG00000082068.8 protein_coding WDR70 1 OTTHUMG00000162263.1 +49046 chr5 HAVANA gene 37812677 37839686 4273.0 - 0 ENSG00000168621.14 protein_coding GDNF 2 OTTHUMG00000090809.3 +49047 chr5 HAVANA gene 37899363 37920869 540.0 - 0 ENSG00000248539.1 lincRNA LINC02117 2 OTTHUMG00000162107.1 +49048 chr5 HAVANA gene 37939365 37947955 442.0 - 0 ENSG00000250032.1 lincRNA AC008869.1 1 OTTHUMG00000162112.1 +49049 chr5 HAVANA gene 37948491 37951055 546.0 + 0 ENSG00000251518.1 lincRNA LINC02110 2 OTTHUMG00000162103.1 +49050 chr5 HAVANA gene 37811589 37953827 9873.0 + 0 ENSG00000248587.7 antisense GDNF-AS1 2 OTTHUMG00000162110.3 +49051 chr5 HAVANA gene 37953402 37966964 487.0 + 0 ENSG00000248533.1 lincRNA AC034226.1 1 OTTHUMG00000162105.1 +49052 chr5 HAVANA gene 38148480 38153715 2573.0 + 0 ENSG00000248461.1 lincRNA LINC02119 1 OTTHUMG00000162113.2 overlapping_locus +49053 chr5 HAVANA gene 38025697 38183932 462.0 + 0 ENSG00000250003.2 lincRNA LINC02107 2 OTTHUMG00000162104.2 overlapping_locus +49054 chr5 HAVANA gene 38197432 38198148 717.0 + 0 ENSG00000276332.1 processed_pseudogene AC010338.1 1 OTTHUMG00000187574.1 pseudo_consens +49055 chr5 HAVANA gene 38282264 38290986 1579.0 - 0 ENSG00000248730.1 antisense EGFLAM-AS4 2 OTTHUMG00000162114.1 +49056 chr5 HAVANA gene 38345347 38346551 549.0 - 0 ENSG00000249071.2 antisense EGFLAM-AS3 2 OTTHUMG00000162108.2 +49057 chr5 HAVANA gene 38399814 38403413 747.0 - 0 ENSG00000248572.5 antisense EGFLAM-AS2 2 OTTHUMG00000162115.1 +49058 chr5 HAVANA gene 38425036 38427376 331.0 - 0 ENSG00000249491.1 antisense EGFLAM-AS1 2 OTTHUMG00000162101.1 +49059 chr5 HAVANA gene 38429892 38430160 269.0 - 0 ENSG00000248234.1 processed_pseudogene AC091839.1 1 OTTHUMG00000162111.1 pseudo_consens +49060 chr5 HAVANA gene 38258409 38465021 5724.0 + 0 ENSG00000164318.17 protein_coding EGFLAM 2 OTTHUMG00000131139.3 +49061 chr5 HAVANA gene 38460925 38468339 726.0 - 0 ENSG00000251257.2 antisense AC010457.1 1 OTTHUMG00000162102.2 +49062 chr5 ENSEMBL gene 38557502 38557561 60.0 - 0 ENSG00000265304.1 miRNA MIR3650 3 +49063 chr5 HAVANA gene 38474963 38608354 11864.0 - 0 ENSG00000113594.9 protein_coding LIFR 2 OTTHUMG00000131138.3 ncRNA_host +49064 chr5 HAVANA gene 38556786 38671216 5098.0 + 0 ENSG00000244968.6 antisense LIFR-AS1 2 OTTHUMG00000162109.1 +49065 chr5 HAVANA gene 38682070 38685126 554.0 + 0 ENSG00000251189.1 lincRNA AC010425.1 2 OTTHUMG00000162106.1 +49066 chr5 HAVANA gene 38763158 38764289 584.0 - 0 ENSG00000248577.1 processed_pseudogene AC091435.1 1 OTTHUMG00000162041.1 pseudo_consens,overlapping_locus +49067 chr5 HAVANA gene 38783580 38792754 565.0 + 0 ENSG00000250629.1 antisense AC091435.2 1 OTTHUMG00000162039.1 +49068 chr5 HAVANA gene 38710367 38845829 2119.0 - 0 ENSG00000249740.2 lincRNA OSMR-AS1 1 OTTHUMG00000162040.2 +49069 chr5 HAVANA gene 38845858 38945596 7174.0 + 0 ENSG00000145623.12 protein_coding OSMR 1 OTTHUMG00000090811.2 +49070 chr5 HAVANA gene 39022411 39022558 148.0 + 0 ENSG00000249089.1 unprocessed_pseudogene AIG1P1 2 OTTHUMG00000162194.1 +49071 chr5 HAVANA gene 38937919 39074408 13550.0 - 0 ENSG00000164327.12 protein_coding RICTOR 2 OTTHUMG00000162037.2 +49072 chr5 HAVANA gene 39169210 39170335 980.0 - 0 ENSG00000251215.1 processed_pseudogene GOLGA5P1 1 OTTHUMG00000162072.1 pseudo_consens,overlapping_locus +49073 chr5 HAVANA gene 39105255 39274528 8850.0 - 0 ENSG00000082074.16 protein_coding FYB1 2 OTTHUMG00000162071.8 overlapping_locus +49074 chr5 HAVANA gene 39284262 39424868 2951.0 - 0 ENSG00000113600.10 protein_coding C9 2 OTTHUMG00000094767.4 overlapping_locus +49075 chr5 HAVANA gene 39371675 39462300 7717.0 - 0 ENSG00000153071.14 protein_coding DAB2 2 OTTHUMG00000162043.4 overlapping_locus +49076 chr5 HAVANA gene 39520431 39524708 599.0 + 0 ENSG00000271334.5 lincRNA LINC02104 2 OTTHUMG00000185121.1 +49077 chr5 HAVANA gene 39571478 39572639 1162.0 - 0 ENSG00000251515.1 processed_pseudogene CCDC11P1 1 OTTHUMG00000162073.1 pseudo_consens +49078 chr5 HAVANA gene 39718984 39721513 2530.0 - 0 ENSG00000250492.1 processed_pseudogene INTS6P1 1 OTTHUMG00000162069.1 pseudo_consens +49079 chr5 HAVANA gene 39888576 39889059 484.0 - 0 ENSG00000248651.1 processed_pseudogene GCSHP1 1 OTTHUMG00000162068.1 pseudo_consens +49080 chr5 HAVANA gene 39892138 40053324 936.0 + 0 ENSG00000250048.2 lincRNA LINC00603 2 OTTHUMG00000162195.2 +49081 chr5 HAVANA gene 40066651 40067200 550.0 + 0 ENSG00000249668.1 processed_pseudogene KRT18P56 1 OTTHUMG00000162070.2 pseudo_consens +49082 chr5 HAVANA gene 40240173 40267657 885.0 + 0 ENSG00000250585.2 lincRNA LINC00604 1 OTTHUMG00000162074.2 +49083 chr5 ENSEMBL gene 40269558 40269719 162.0 + 0 ENSG00000199361.1 snRNA RNU1-150P 3 +49084 chr5 HAVANA gene 40415137 40431491 1622.0 + 0 ENSG00000283286.1 lincRNA AC093277.1 2 OTTHUMG00000191695.1 +49085 chr5 HAVANA gene 40474908 40490430 4592.0 - 0 ENSG00000285616.1 lincRNA AC114977.2 2 OTTHUMG00000192640.1 +49086 chr5 HAVANA gene 40463562 40504563 935.0 + 0 ENSG00000285552.1 lincRNA AC114977.1 2 OTTHUMG00000192628.2 +49087 chr5 ENSEMBL gene 40654963 40655094 132.0 + 0 ENSG00000199552.1 snoRNA RF00092 3 +49088 chr5 HAVANA gene 40679498 40693735 3961.0 + 0 ENSG00000171522.5 protein_coding PTGER4 2 OTTHUMG00000094769.4 +49089 chr5 HAVANA gene 40512333 40755975 6821.0 - 0 ENSG00000113638.13 protein_coding TTC33 2 OTTHUMG00000131142.5 +49090 chr5 ENSEMBL gene 40790077 40790204 128.0 - 0 ENSG00000212567.1 snoRNA RF00191 3 +49091 chr5 HAVANA gene 40759379 40798374 6563.0 - 0 ENSG00000132356.11 protein_coding PRKAA1 1 OTTHUMG00000162269.1 ncRNA_host +49092 chr5 ENSEMBL gene 40832656 40832735 80.0 - 0 ENSG00000212296.1 snoRNA SNORD72 3 +49093 chr5 HAVANA gene 40825262 40835335 8153.0 - 0 ENSG00000145592.13 protein_coding RPL37 1 OTTHUMG00000094774.5 ncRNA_host +49094 chr5 HAVANA gene 40841184 40860175 4399.0 + 0 ENSG00000132357.13 protein_coding CARD6 1 OTTHUMG00000094775.8 +49095 chr5 ENSEMBL gene 40911067 40911128 62.0 - 0 ENSG00000253098.1 snRNA RNU7-161P 3 +49096 chr5 HAVANA gene 40967505 40967763 259.0 - 0 ENSG00000248120.1 processed_pseudogene AC114967.1 1 OTTHUMG00000162268.3 pseudo_consens +49097 chr5 HAVANA gene 40909252 40982939 5223.0 + 0 ENSG00000112936.18 protein_coding C7 1 OTTHUMG00000150340.3 +49098 chr5 HAVANA gene 40998017 41071342 6085.0 - 0 ENSG00000171495.16 protein_coding MROH2B 2 OTTHUMG00000162151.5 +49099 chr5 HAVANA gene 41142234 41261438 4739.0 - 0 ENSG00000039537.13 protein_coding C6 1 OTTHUMG00000094781.6 +49100 chr5 HAVANA gene 41306954 41510628 7731.0 - 0 ENSG00000182836.9 protein_coding PLCXD3 2 OTTHUMG00000162076.1 +49101 chr5 HAVANA gene 41585882 41587787 1562.0 - 0 ENSG00000251478.1 processed_pseudogene AC008817.1 1 OTTHUMG00000162086.1 pseudo_consens +49102 chr5 HAVANA gene 41730065 41870519 4194.0 - 0 ENSG00000083720.12 protein_coding OXCT1 2 OTTHUMG00000094783.3 +49103 chr5 HAVANA gene 41870030 41872241 2065.0 + 0 ENSG00000248668.2 processed_transcript OXCT1-AS1 2 OTTHUMG00000162087.2 +49104 chr5 HAVANA gene 41895068 41895599 532.0 + 0 ENSG00000240281.2 processed_pseudogene AC034222.1 1 OTTHUMG00000157674.2 pseudo_consens +49105 chr5 HAVANA gene 41904188 41921636 5572.0 + 0 ENSG00000205765.8 protein_coding C5orf51 2 OTTHUMG00000162084.1 +49106 chr5 HAVANA gene 41925254 41941743 3014.0 + 0 ENSG00000151876.12 protein_coding FBXO4 1 OTTHUMG00000094799.3 +49107 chr5 HAVANA gene 41951313 41952193 881.0 - 0 ENSG00000239694.1 processed_pseudogene RPSAP38 1 OTTHUMG00000157678.1 pseudo_consens +49108 chr5 ENSEMBL gene 41963868 41963969 102.0 - 0 ENSG00000199487.1 misc_RNA RF00019 3 +49109 chr5 HAVANA gene 41967139 41968366 1022.0 - 0 ENSG00000249266.1 processed_pseudogene MTHFD2P6 1 OTTHUMG00000162085.2 pseudo_consens +49110 chr5 HAVANA gene 42188266 42191523 3258.0 + 0 ENSG00000260786.1 lincRNA AC108099.1 2 OTTHUMG00000173426.1 +49111 chr5 HAVANA gene 42466893 42468300 1408.0 - 0 ENSG00000250860.1 processed_pseudogene AC093225.1 1 OTTHUMG00000162132.1 pseudo_consens,overlapping_locus +49112 chr5 HAVANA gene 42465400 42468868 932.0 - 0 ENSG00000248873.1 processed_pseudogene SERBP1P6 1 OTTHUMG00000162137.1 pseudo_consens,overlapping_locus +49113 chr5 HAVANA gene 42423777 42721878 6610.0 + 0 ENSG00000112964.13 protein_coding GHR 2 OTTHUMG00000094791.2 +49114 chr5 HAVANA gene 42729138 42729519 382.0 + 0 ENSG00000270513.1 processed_pseudogene AC113368.1 1 OTTHUMG00000184559.1 pseudo_consens +49115 chr5 HAVANA gene 42756801 42802360 3431.0 + 0 ENSG00000198865.9 protein_coding CCDC152 2 OTTHUMG00000162141.1 +49116 chr5 HAVANA gene 42806394 42806997 604.0 + 0 ENSG00000272234.1 antisense AC008945.1 2 OTTHUMG00000185470.1 +49117 chr5 HAVANA gene 42799880 42887392 5688.0 - 0 ENSG00000250722.5 protein_coding SELENOP 1 OTTHUMG00000162140.4 +49118 chr5 HAVANA gene 42892319 42892817 499.0 - 0 ENSG00000249092.1 processed_pseudogene PPIAP77 1 OTTHUMG00000162139.1 pseudo_consens +49119 chr5 HAVANA gene 42897262 42897832 571.0 - 0 ENSG00000251163.1 processed_pseudogene PRELID3BP4 1 OTTHUMG00000162136.2 pseudo_consens +49120 chr5 HAVANA gene 42908208 42908667 460.0 - 0 ENSG00000251656.1 processed_pseudogene PRELID3BP5 1 OTTHUMG00000162138.2 pseudo_consens +49121 chr5 HAVANA gene 42917414 42917984 571.0 + 0 ENSG00000249516.1 processed_pseudogene PRELID3BP6 1 OTTHUMG00000162134.2 pseudo_consens +49122 chr5 HAVANA gene 42972624 42973092 469.0 + 0 ENSG00000250711.1 processed_pseudogene PRELID3BP7 1 OTTHUMG00000162135.2 pseudo_consens +49123 chr5 HAVANA gene 43006733 43007543 811.0 - 0 ENSG00000271788.1 lincRNA AC008875.1 2 OTTHUMG00000185475.1 +49124 chr5 HAVANA gene 43018429 43024247 553.0 + 0 ENSG00000251131.1 antisense AC025171.3 1 OTTHUMG00000162236.1 +49125 chr5 HAVANA gene 43033716 43034635 920.0 + 0 ENSG00000272382.1 lincRNA AC025171.5 2 OTTHUMG00000185476.1 +49126 chr5 HAVANA gene 43039081 43043170 2386.0 - 0 ENSG00000177721.4 protein_coding ANXA2R 2 OTTHUMG00000162232.1 overlapping_locus +49127 chr5 HAVANA gene 43041575 43045390 2773.0 + 0 ENSG00000215068.7 antisense AC025171.2 2 OTTHUMG00000131146.2 +49128 chr5 HAVANA gene 43061395 43062441 1047.0 + 0 ENSG00000272144.1 lincRNA AC025171.4 2 OTTHUMG00000185477.1 +49129 chr5 HAVANA gene 43014414 43067419 2784.0 - 0 ENSG00000177738.3 sense_overlapping AC025171.1 2 OTTHUMG00000162133.2 overlapping_locus +49130 chr5 HAVANA gene 43143362 43143514 153.0 - 0 ENSG00000278487.1 processed_pseudogene AC106800.4 2 OTTHUMG00000187578.1 +49131 chr5 HAVANA gene 43065176 43192021 8516.0 + 0 ENSG00000172262.11 protein_coding ZNF131 1 OTTHUMG00000162223.3 +49132 chr5 HAVANA gene 43206709 43207811 1103.0 + 0 ENSG00000249779.1 processed_pseudogene AC106800.2 1 OTTHUMG00000162221.1 pseudo_consens,overlapping_locus +49133 chr5 HAVANA gene 43225506 43225813 308.0 - 0 ENSG00000249888.1 processed_pseudogene AC106800.3 1 OTTHUMG00000162226.1 pseudo_consens +49134 chr5 HAVANA gene 43231812 43233173 1362.0 - 0 ENSG00000247763.2 processed_pseudogene AC106800.1 1 OTTHUMG00000162228.2 pseudo_consens +49135 chr5 HAVANA gene 43192071 43280850 3619.0 + 0 ENSG00000177453.7 protein_coding NIM1K 2 OTTHUMG00000131147.2 overlapping_locus +49136 chr5 HAVANA gene 43287601 43290839 2497.0 + 0 ENSG00000261604.1 antisense AC114947.2 2 OTTHUMG00000175405.1 +49137 chr5 HAVANA gene 43289395 43313512 4702.0 - 0 ENSG00000112972.14 protein_coding HMGCS1 2 OTTHUMG00000162231.2 +49138 chr5 HAVANA gene 43336164 43348716 579.0 + 0 ENSG00000188850.9 transcribed_processed_pseudogene AC114947.1 1 OTTHUMG00000162222.1 pseudo_consens +49139 chr5 HAVANA gene 43376645 43412391 4524.0 - 0 ENSG00000151882.11 protein_coding CCL28 1 OTTHUMG00000094811.3 +49140 chr5 HAVANA gene 43444252 43483893 3158.0 - 0 ENSG00000151881.14 protein_coding TMEM267 2 OTTHUMG00000131150.3 +49141 chr5 HAVANA gene 43495073 43496454 1382.0 - 0 ENSG00000249855.1 processed_pseudogene EEF1A1P19 1 OTTHUMG00000162225.1 pseudo_consens,overlapping_locus +49142 chr5 HAVANA gene 43483959 43509356 823.0 + 0 ENSG00000249492.1 processed_transcript AC114956.3 1 OTTHUMG00000162227.2 +49143 chr5 HAVANA gene 43486701 43515145 3011.0 - 0 ENSG00000172244.8 protein_coding C5orf34 2 OTTHUMG00000131151.5 overlapping_locus +49144 chr5 HAVANA gene 43511058 43521811 572.0 + 0 ENSG00000248554.1 antisense AC114956.2 2 OTTHUMG00000162234.1 overlapping_locus +49145 chr5 HAVANA gene 43515274 43525310 512.0 + 0 ENSG00000248240.1 antisense AC114956.1 2 OTTHUMG00000162219.1 overlapping_locus +49146 chr5 HAVANA gene 43526267 43557758 3391.0 - 0 ENSG00000172239.13 protein_coding PAIP1 2 OTTHUMG00000096960.4 +49147 chr5 HAVANA gene 43586367 43587543 1177.0 - 0 ENSG00000279557.1 TEC AC010435.1 2 OTTHUMG00000185325.1 overlapping_locus +49148 chr5 HAVANA gene 43586918 43588223 994.0 - 0 ENSG00000249286.1 processed_pseudogene AMD1P3 1 OTTHUMG00000162224.1 pseudo_consens,overlapping_locus +49149 chr5 HAVANA gene 43571594 43603230 6580.0 - 0 ENSG00000248092.7 antisense NNT-AS1 1 OTTHUMG00000162220.2 overlapping_locus +49150 chr5 HAVANA gene 43666766 43667232 467.0 - 0 ENSG00000224993.3 processed_pseudogene RPL29P12 1 OTTHUMG00000157679.1 pseudo_consens +49151 chr5 HAVANA gene 43602692 43707405 8245.0 + 0 ENSG00000112992.16 protein_coding NNT 1 OTTHUMG00000096961.7 +49152 chr5 HAVANA gene 43874367 43886628 339.0 + 0 ENSG00000249276.1 lincRNA AC104119.1 2 OTTHUMG00000162230.1 +49153 chr5 ENSEMBL gene 44066624 44066731 108.0 - 0 ENSG00000212561.1 snRNA RNU6-381P 3 +49154 chr5 HAVANA gene 44303544 44389706 3011.0 - 0 ENSG00000070193.4 protein_coding FGF10 2 OTTHUMG00000131153.4 +49155 chr5 HAVANA gene 44388732 44413989 1894.0 + 0 ENSG00000248464.1 antisense FGF10-AS1 2 OTTHUMG00000162233.1 +49156 chr5 HAVANA gene 44495618 44510282 806.0 - 0 ENSG00000249203.1 lincRNA LINC02224 1 OTTHUMG00000162229.1 +49157 chr5 HAVANA gene 44698431 44700808 449.0 - 0 ENSG00000250418.1 lincRNA AC093292.1 1 OTTHUMG00000162209.1 +49158 chr5 ENSEMBL gene 44716193 44716486 294.0 + 0 ENSG00000263556.2 misc_RNA RN7SL383P 3 +49159 chr5 HAVANA gene 44752949 44765744 591.0 + 0 ENSG00000248779.1 lincRNA AC093297.1 2 OTTHUMG00000162208.1 +49160 chr5 HAVANA gene 44744900 44808777 2211.0 - 0 ENSG00000251141.5 antisense MRPS30-DT 2 OTTHUMG00000162143.2 +49161 chr5 HAVANA gene 44808925 44820428 6202.0 + 0 ENSG00000112996.10 protein_coding MRPS30 2 OTTHUMG00000096967.3 +49162 chr5 HAVANA gene 44826076 44828592 2517.0 + 0 ENSG00000272335.1 lincRNA AC093297.2 2 OTTHUMG00000185479.1 +49163 chr5 HAVANA gene 45035199 45098647 820.0 + 0 ENSG00000248148.1 lincRNA AC114954.1 2 OTTHUMG00000162146.1 +49164 chr5 HAVANA gene 45557919 45559986 2068.0 + 0 ENSG00000250422.1 processed_pseudogene AC117529.2 2 OTTHUMG00000160383.1 +49165 chr5 HAVANA gene 45574590 45576612 2023.0 + 0 ENSG00000250017.1 processed_pseudogene AC117529.1 2 OTTHUMG00000160382.1 +49166 chr5 HAVANA gene 45254950 45696498 13704.0 - 0 ENSG00000164588.6 protein_coding HCN1 2 OTTHUMG00000131155.4 +49167 chr5 HAVANA gene 45890216 45895970 563.0 + 0 ENSG00000250122.1 lincRNA AC122694.1 2 OTTHUMG00000162210.1 +49168 chr5 HAVANA gene 50396192 50443248 5257.0 - 0 ENSG00000170571.11 protein_coding EMB 1 OTTHUMG00000131161.2 +49169 chr5 HAVANA gene 50603229 50603511 283.0 + 0 ENSG00000271455.1 processed_pseudogene AC112187.2 1 OTTHUMG00000184565.1 pseudo_consens +49170 chr5 HAVANA gene 50633124 50633602 479.0 + 0 ENSG00000213956.4 processed_pseudogene AC112187.1 1 OTTHUMG00000162174.1 pseudo_consens +49171 chr5 HAVANA gene 50662859 50663266 408.0 - 0 ENSG00000271752.1 lincRNA AC112187.3 2 OTTHUMG00000185342.1 +49172 chr5 HAVANA gene 50665899 50846522 10056.0 + 0 ENSG00000151883.17 protein_coding PARP8 1 OTTHUMG00000096969.8 +49173 chr5 HAVANA gene 50858760 50860020 794.0 - 0 ENSG00000249405.1 lincRNA AC022441.1 1 OTTHUMG00000162407.1 +49174 chr5 HAVANA gene 50903608 50903743 136.0 + 0 ENSG00000270830.1 processed_pseudogene AC022441.3 1 OTTHUMG00000184557.1 pseudo_consens +49175 chr5 HAVANA gene 50929484 50934521 382.0 - 0 ENSG00000251601.1 lincRNA AC022441.2 2 OTTHUMG00000162405.1 +49176 chr5 HAVANA gene 50965687 50967008 569.0 - 0 ENSG00000250360.1 lincRNA AC008808.2 2 OTTHUMG00000162402.1 +49177 chr5 HAVANA gene 50969217 50970167 606.0 - 0 ENSG00000251573.2 lincRNA LINC02106 1 OTTHUMG00000162408.2 +49178 chr5 HAVANA gene 50969660 50970187 432.0 + 0 ENSG00000248918.2 lincRNA AC008808.1 2 OTTHUMG00000162410.2 +49179 chr5 ENSEMBL gene 51055353 51055459 107.0 - 0 ENSG00000207060.1 snRNA RNU6-480P 3 +49180 chr5 HAVANA gene 51101172 51101643 472.0 - 0 ENSG00000278734.1 processed_pseudogene AC091834.1 2 OTTHUMG00000187582.1 +49181 chr5 ENSEMBL gene 51167541 51167647 107.0 - 0 ENSG00000206606.1 snRNA RNU6-1296P 3 +49182 chr5 HAVANA gene 51275253 51275734 482.0 + 0 ENSG00000240627.1 processed_pseudogene AC026798.1 1 OTTHUMG00000157682.1 pseudo_consens +49183 chr5 HAVANA gene 51372736 51383332 7152.0 - 0 ENSG00000259663.2 antisense AC010478.1 2 OTTHUMG00000171880.2 +49184 chr5 HAVANA gene 51383391 51394738 2882.0 + 0 ENSG00000016082.14 protein_coding ISL1 2 OTTHUMG00000162281.10 +49185 chr5 HAVANA gene 51409617 51410205 589.0 - 0 ENSG00000249338.1 processed_pseudogene HMGB1P47 1 OTTHUMG00000162403.1 pseudo_consens +49186 chr5 HAVANA gene 51427996 51428427 432.0 - 0 ENSG00000248891.2 processed_pseudogene AC091860.1 1 OTTHUMG00000162409.2 pseudo_consens +49187 chr5 HAVANA gene 51451158 51462089 941.0 + 0 ENSG00000251125.1 lincRNA AC091860.2 2 OTTHUMG00000162404.1 +49188 chr5 ENSEMBL gene 51886688 51886769 82.0 + 0 ENSG00000251873.1 rRNA_pseudogene RNA5SP182 3 +49189 chr5 HAVANA gene 51930808 51932036 918.0 + 0 ENSG00000249270.1 processed_pseudogene KATNBL1P4 1 OTTHUMG00000160384.1 pseudo_consens +49190 chr5 HAVANA gene 51963992 51964445 454.0 + 0 ENSG00000279470.1 TEC AC091903.1 2 OTTHUMG00000162169.1 +49191 chr5 HAVANA gene 52008031 52080987 759.0 + 0 ENSG00000248789.5 lincRNA LINC02118 2 OTTHUMG00000162170.1 +49192 chr5 HAVANA gene 52282567 52282859 293.0 + 0 ENSG00000244621.1 processed_pseudogene RPS17P11 1 OTTHUMG00000157683.1 pseudo_consens +49193 chr5 HAVANA gene 52579555 52581106 1552.0 - 0 ENSG00000250827.1 processed_pseudogene MFSD4BP1 1 OTTHUMG00000162166.1 pseudo_consens +49194 chr5 HAVANA gene 52675193 52788026 593.0 - 0 ENSG00000248898.1 antisense AC022126.1 2 OTTHUMG00000162165.1 +49195 chr5 HAVANA gene 52787940 52804046 4349.0 + 0 ENSG00000152684.10 protein_coding PELO 2 OTTHUMG00000096973.2 overlapping_locus +49196 chr5 HAVANA gene 52889666 52889954 289.0 + 0 ENSG00000251237.1 processed_pseudogene B3GNTL1P1 1 OTTHUMG00000162172.1 pseudo_consens,overlapping_locus +49197 chr5 HAVANA gene 52903908 52904478 571.0 + 0 ENSG00000241809.1 processed_pseudogene AC022133.1 1 OTTHUMG00000157684.1 pseudo_consens,overlapping_locus +49198 chr5 HAVANA gene 52787896 52959210 18566.0 + 0 ENSG00000213949.8 protein_coding ITGA1 2 OTTHUMG00000131163.4 overlapping_locus +49199 chr5 HAVANA gene 52932419 52990278 611.0 - 0 ENSG00000249899.5 antisense AC025180.1 2 OTTHUMG00000162173.2 +49200 chr5 HAVANA gene 53089016 53089468 453.0 - 0 ENSG00000272123.1 antisense AC008966.2 2 OTTHUMG00000185483.1 +49201 chr5 HAVANA gene 52989326 53094779 7910.0 + 0 ENSG00000164171.10 protein_coding ITGA2 2 OTTHUMG00000131165.4 +49202 chr5 HAVANA gene 53095679 53110063 6010.0 - 0 ENSG00000164172.18 protein_coding MOCS2 1 OTTHUMG00000096981.7 +49203 chr5 HAVANA gene 53109842 53115126 3194.0 + 0 ENSG00000247796.2 antisense AC008966.1 1 OTTHUMG00000162191.1 +49204 chr5 HAVANA gene 53206561 53207176 616.0 + 0 ENSG00000213940.4 processed_pseudogene AC026477.1 1 OTTHUMG00000157686.2 pseudo_consens +49205 chr5 HAVANA gene 53297872 53326565 4355.0 - 0 ENSG00000285831.1 lincRNA AC027329.1 2 OTTHUMG00000193379.1 +49206 chr5 HAVANA gene 53413504 53414260 437.0 + 0 ENSG00000240052.1 processed_pseudogene AC108114.1 1 OTTHUMG00000157688.2 pseudo_consens +49207 chr5 HAVANA gene 53480409 53487134 2969.0 + 0 ENSG00000134363.11 protein_coding FST 2 OTTHUMG00000131183.4 +49208 chr5 HAVANA gene 53560633 53683340 1176.0 + 0 ENSG00000164258.11 protein_coding NDUFS4 2 OTTHUMG00000096987.3 +49209 chr5 HAVANA gene 53776644 53819686 1253.0 - 0 ENSG00000250447.5 lincRNA LINC02105 2 OTTHUMG00000162282.1 +49210 chr5 HAVANA gene 53859166 53860401 1236.0 + 0 ENSG00000217791.4 processed_pseudogene ASS1P9 1 OTTHUMG00000162285.1 pseudo_consens +49211 chr5 HAVANA gene 53880293 53881051 759.0 - 0 ENSG00000272416.1 lincRNA AC025175.1 2 OTTHUMG00000185489.1 +49212 chr5 ENSEMBL gene 53912020 53912123 104.0 - 0 ENSG00000222960.1 snRNA RNU6-272P 3 +49213 chr5 ENSEMBL gene 53951504 53951599 96.0 - 0 ENSG00000207627.1 miRNA MIR581 3 +49214 chr5 ENSEMBL gene 54048007 54048308 302.0 - 0 ENSG00000241230.3 misc_RNA RN7SL801P 3 +49215 chr5 ENSEMBL gene 54075518 54075583 66.0 - 0 ENSG00000265421.1 miRNA MIR4459 3 +49216 chr5 HAVANA gene 54286194 54286331 138.0 - 0 ENSG00000279638.1 TEC AC008873.1 2 OTTHUMG00000162284.1 overlapping_locus +49217 chr5 HAVANA gene 53883945 54310582 3797.0 - 0 ENSG00000185305.10 protein_coding ARL15 2 OTTHUMG00000162287.4 ncRNA_host,overlapping_locus +49218 chr5 HAVANA gene 54399439 54400033 276.0 + 0 ENSG00000251597.1 processed_pseudogene RPL37P25 1 OTTHUMG00000162288.1 pseudo_consens,overlapping_locus +49219 chr5 HAVANA gene 54320944 54415125 1261.0 + 0 ENSG00000249069.7 lincRNA LINC01033 1 OTTHUMG00000162286.3 overlapping_locus +49220 chr5 HAVANA gene 54455601 54456384 784.0 + 0 ENSG00000169271.2 protein_coding HSPB3 2 OTTHUMG00000096995.2 +49221 chr5 HAVANA gene 54517759 54546585 6653.0 + 0 ENSG00000178996.13 protein_coding SNX18 2 OTTHUMG00000096994.3 retrogene +49222 chr5 HAVANA gene 54643557 54645987 2431.0 + 0 ENSG00000280159.1 TEC AC016583.1 2 OTTHUMG00000173471.1 +49223 chr5 HAVANA gene 54857272 54858491 1220.0 + 0 ENSG00000226810.3 processed_pseudogene AC112198.1 2 OTTHUMG00000162190.1 +49224 chr5 HAVANA gene 54808210 54872551 6996.0 - 0 ENSG00000232517.2 unitary_pseudogene AC112198.2 2 OTTHUMG00000154831.2 +49225 chr5 HAVANA gene 54878238 54878588 351.0 + 0 ENSG00000249843.1 processed_pseudogene AC112198.4 2 OTTHUMG00000162189.1 +49226 chr5 HAVANA gene 54956235 54957846 441.0 - 0 ENSG00000249016.1 lincRNA AC112198.3 1 OTTHUMG00000162192.1 +49227 chr5 HAVANA gene 54977864 55022671 2695.0 - 0 ENSG00000164283.12 protein_coding ESM1 2 OTTHUMG00000097010.5 overlapping_locus +49228 chr5 HAVANA gene 55024253 55034570 1570.0 + 0 ENSG00000113088.5 protein_coding GZMK 2 OTTHUMG00000097009.2 +49229 chr5 ENSEMBL gene 55040847 55040945 99.0 + 0 ENSG00000207229.1 misc_RNA RF00019 3 +49230 chr5 HAVANA gene 55021299 55042844 4140.0 - 0 ENSG00000240535.8 processed_transcript AC034238.1 1 OTTHUMG00000162200.4 overlapping_locus +49231 chr5 HAVANA gene 55054428 55055140 591.0 + 0 ENSG00000251376.1 lincRNA AC034238.3 2 OTTHUMG00000162201.1 +49232 chr5 HAVANA gene 55063179 55066230 567.0 + 0 ENSG00000248029.2 lincRNA AC034238.2 2 OTTHUMG00000162202.1 +49233 chr5 HAVANA gene 55073015 55096553 631.0 + 0 ENSG00000249454.1 unprocessed_pseudogene GZMAP1 2 OTTHUMG00000162199.1 +49234 chr5 HAVANA gene 55102648 55110252 894.0 + 0 ENSG00000145649.7 protein_coding GZMA 2 OTTHUMG00000097011.2 +49235 chr5 HAVANA gene 55160118 55167071 3868.0 + 0 ENSG00000164294.13 protein_coding GPX8 1 OTTHUMG00000162601.2 +49236 chr5 ENSEMBL gene 55170532 55170622 91.0 - 0 ENSG00000198983.1 miRNA MIR449A 3 +49237 chr5 ENSEMBL gene 55170646 55170742 97.0 - 0 ENSG00000207728.1 miRNA MIR449B 3 +49238 chr5 ENSEMBL gene 55172262 55172353 92.0 - 0 ENSG00000251856.1 miRNA MIR449C 3 +49239 chr5 HAVANA gene 55112995 55173175 4496.0 - 0 ENSG00000164287.12 protein_coding CDC20B 2 OTTHUMG00000131185.2 ncRNA_host +49240 chr5 HAVANA gene 55219614 55227315 2091.0 - 0 ENSG00000234602.7 protein_coding MCIDAS 2 OTTHUMG00000162600.1 +49241 chr5 HAVANA gene 55231152 55233680 1809.0 - 0 ENSG00000152669.8 protein_coding CCNO 2 OTTHUMG00000162598.1 +49242 chr5 HAVANA gene 55233934 55295201 770.0 + 0 ENSG00000251307.1 antisense AC026704.1 2 OTTHUMG00000162314.1 +49243 chr5 HAVANA gene 55256245 55307722 4734.0 - 0 ENSG00000067248.9 protein_coding DHX29 2 OTTHUMG00000162313.2 +49244 chr5 HAVANA gene 55356308 55357523 1216.0 - 0 ENSG00000271410.1 processed_pseudogene AC020728.1 1 OTTHUMG00000184306.1 pseudo_consens +49245 chr5 HAVANA gene 55307760 55425581 6578.0 + 0 ENSG00000039123.15 protein_coding MTREX 2 OTTHUMG00000097019.3 +49246 chr5 HAVANA gene 55484403 55485086 684.0 + 0 ENSG00000279883.1 TEC AC010480.1 2 OTTHUMG00000162377.1 +49247 chr5 ENSEMBL gene 55508850 55508926 77.0 - 0 ENSG00000265135.1 miRNA MIR5687 3 +49248 chr5 HAVANA gene 55530156 55530701 546.0 - 0 ENSG00000250853.1 processed_pseudogene RNF138P1 1 OTTHUMG00000162239.1 pseudo_consens,overlapping_locus +49249 chr5 HAVANA gene 55424854 55535050 2016.0 - 0 ENSG00000067113.16 protein_coding PLPP1 2 OTTHUMG00000162240.2 ncRNA_host,overlapping_locus +49250 chr5 HAVANA gene 55551885 55552554 670.0 - 0 ENSG00000249410.1 processed_pseudogene AK4P2 1 OTTHUMG00000162238.1 pseudo_consens +49251 chr5 HAVANA gene 55750206 55750401 196.0 - 0 ENSG00000251368.1 processed_pseudogene AC016632.1 1 OTTHUMG00000162312.1 pseudo_consens,overlapping_locus +49252 chr5 HAVANA gene 55625845 55773194 8823.0 - 0 ENSG00000177058.11 protein_coding SLC38A9 1 OTTHUMG00000131189.10 overlapping_locus +49253 chr5 ENSEMBL gene 55777469 55777587 119.0 + 0 ENSG00000199322.1 rRNA_pseudogene RNA5SP183 3 +49254 chr5 HAVANA gene 55738017 55817157 3829.0 + 0 ENSG00000152670.18 protein_coding DDX4 2 OTTHUMG00000097044.11 +49255 chr5 HAVANA gene 55838801 55840025 1225.0 - 0 ENSG00000248854.1 processed_pseudogene HNRNPH1P3 1 OTTHUMG00000162319.2 pseudo_consens +49256 chr5 HAVANA gene 55851379 55922853 4576.0 + 0 ENSG00000164509.13 protein_coding IL31RA 1 OTTHUMG00000097045.5 +49257 chr5 HAVANA gene 55936143 55941727 797.0 + 0 ENSG00000262211.1 antisense AC008914.1 2 OTTHUMG00000177604.1 +49258 chr5 HAVANA gene 55944656 55944733 78.0 + 0 ENSG00000264281.3 processed_pseudogene AC016596.1 2 OTTHUMG00000163591.2 +49259 chr5 HAVANA gene 55935095 55994993 9292.0 - 0 ENSG00000134352.19 protein_coding IL6ST 1 OTTHUMG00000097043.12 +49260 chr5 ENSEMBL gene 56000518 56000621 104.0 - 0 ENSG00000238326.1 snoRNA RF01210 3 +49261 chr5 HAVANA gene 55995167 56003649 2289.0 + 0 ENSG00000227908.3 antisense FLJ31104 1 OTTHUMG00000162310.2 +49262 chr5 HAVANA gene 55978248 56111329 1169.0 + 0 ENSG00000249236.2 lincRNA AC008892.1 2 OTTHUMG00000162302.2 +49263 chr5 ENSEMBL gene 56125671 56125770 100.0 + 0 ENSG00000253032.1 snRNA RNU6-299P 3 +49264 chr5 HAVANA gene 56136979 56137531 553.0 + 0 ENSG00000243592.1 processed_pseudogene RPL17P22 1 OTTHUMG00000157693.1 pseudo_consens +49265 chr5 ENSEMBL gene 56146739 56146846 108.0 - 0 ENSG00000223003.1 rRNA_pseudogene RNA5SP184 3 +49266 chr5 HAVANA gene 56192530 56193633 1104.0 + 0 ENSG00000251435.1 processed_pseudogene C1GALT1P2 1 OTTHUMG00000162308.2 pseudo_consens +49267 chr5 HAVANA gene 56099678 56233359 2979.0 - 0 ENSG00000164512.17 protein_coding ANKRD55 1 OTTHUMG00000162305.6 +49268 chr5 ENSEMBL gene 56260333 56260446 114.0 - 0 ENSG00000212265.1 rRNA_pseudogene RNA5SP185 3 +49269 chr5 HAVANA gene 56275304 56276630 1327.0 - 0 ENSG00000248781.1 processed_pseudogene PSMC1P4 1 OTTHUMG00000162303.1 pseudo_consens +49270 chr5 ENSEMBL gene 56297564 56297689 126.0 - 0 ENSG00000210678.1 snRNA RNU6ATAC2P 3 +49271 chr5 HAVANA gene 56313905 56321397 1227.0 - 0 ENSG00000249697.1 lincRNA AC034245.1 2 OTTHUMG00000162304.1 +49272 chr5 HAVANA gene 56381781 56382075 295.0 + 0 ENSG00000250787.1 processed_pseudogene HMGN1P17 2 OTTHUMG00000162299.2 +49273 chr5 HAVANA gene 56457795 56481946 858.0 - 0 ENSG00000248727.5 lincRNA LINC01948 1 OTTHUMG00000162309.3 +49274 chr5 HAVANA gene 56504635 56505072 438.0 - 0 ENSG00000226221.1 processed_pseudogene RPL26P19 1 OTTHUMG00000059487.1 pseudo_consens +49275 chr5 HAVANA gene 56536583 56537826 536.0 - 0 ENSG00000234553.1 sense_intronic AC022431.1 1 OTTHUMG00000150054.1 overlapping_locus +49276 chr5 HAVANA gene 56511567 56606232 767.0 - 0 ENSG00000225940.6 protein_coding C5orf67 1 OTTHUMG00000059482.1 overlapping_locus +49277 chr5 HAVANA gene 56770799 56772303 785.0 + 0 ENSG00000228650.2 lincRNA AC008940.1 2 OTTHUMG00000150053.2 +49278 chr5 HAVANA gene 56842016 56862164 619.0 - 0 ENSG00000237705.1 antisense AC008937.2 2 OTTHUMG00000059483.2 +49279 chr5 HAVANA gene 56815574 56896152 7716.0 + 0 ENSG00000095015.5 protein_coding MAP3K1 1 OTTHUMG00000059486.2 +49280 chr5 HAVANA gene 56900041 56910714 914.0 - 0 ENSG00000225230.1 antisense AC008937.1 2 OTTHUMG00000059484.1 +49281 chr5 HAVANA gene 56909260 56925532 2711.0 + 0 ENSG00000155542.11 protein_coding SETD9 1 OTTHUMG00000059485.6 +49282 chr5 HAVANA gene 56927874 56929573 1700.0 + 0 ENSG00000271828.1 antisense AC008937.3 2 OTTHUMG00000185492.1 +49283 chr5 HAVANA gene 56941307 56947152 434.0 + 0 ENSG00000235635.1 antisense AC016644.1 2 OTTHUMG00000059593.1 +49284 chr5 HAVANA gene 56919602 56971675 5763.0 - 0 ENSG00000155545.19 protein_coding MIER3 1 OTTHUMG00000059589.12 +49285 chr5 HAVANA gene 56975593 56976224 632.0 - 0 ENSG00000233943.1 processed_pseudogene AC114973.1 1 OTTHUMG00000059592.2 pseudo_consens +49286 chr5 HAVANA gene 57081745 57081951 207.0 - 0 ENSG00000248652.2 processed_pseudogene AC034244.1 2 OTTHUMG00000162326.3 +49287 chr5 HAVANA gene 57120796 57122624 858.0 + 0 ENSG00000250480.3 processed_pseudogene AC034244.2 1 OTTHUMG00000160387.5 pseudo_consens +49288 chr5 ENSEMBL gene 57169108 57169209 102.0 - 0 ENSG00000207293.1 misc_RNA RF00019 3 +49289 chr5 HAVANA gene 57173948 57264679 6472.0 + 0 ENSG00000062194.15 protein_coding GPBP1 2 OTTHUMG00000162321.4 +49290 chr5 HAVANA gene 57317989 57320020 2032.0 - 0 ENSG00000248586.2 processed_pseudogene AC025470.1 1 OTTHUMG00000162329.3 pseudo_consens +49291 chr5 HAVANA gene 57422464 57424391 1860.0 + 0 ENSG00000250308.2 processed_pseudogene SALL4P1 2 OTTHUMG00000162322.2 overlapping_locus +49292 chr5 HAVANA gene 57480016 57482809 2794.0 - 0 ENSG00000169067.3 protein_coding ACTBL2 2 OTTHUMG00000162330.1 retrogene +49293 chr5 HAVANA gene 57395060 57533424 897.0 + 0 ENSG00000250961.1 antisense AC025470.2 2 OTTHUMG00000162323.2 overlapping_locus +49294 chr5 HAVANA gene 57574027 57614341 409.0 + 0 ENSG00000248294.1 lincRNA AC008780.1 2 OTTHUMG00000162503.1 +49295 chr5 HAVANA gene 57614389 57617431 820.0 + 0 ENSG00000249436.1 lincRNA AC008780.2 1 OTTHUMG00000162504.1 +49296 chr5 HAVANA gene 57751192 57751717 526.0 - 0 ENSG00000249198.1 lincRNA AC106822.1 2 OTTHUMG00000162327.1 +49297 chr5 HAVANA gene 57890327 57899162 4069.0 - 0 ENSG00000249584.1 lincRNA LINC02225 2 OTTHUMG00000162198.1 +49298 chr5 HAVANA gene 58108082 58122341 725.0 - 0 ENSG00000248132.2 lincRNA LINC02101 2 OTTHUMG00000162196.2 +49299 chr5 HAVANA gene 58161197 58161752 556.0 + 0 ENSG00000248271.1 processed_pseudogene PGAM1P1 1 OTTHUMG00000162197.1 pseudo_consens +49300 chr5 HAVANA gene 58453982 58460260 4768.0 - 0 ENSG00000145632.14 protein_coding PLK2 2 OTTHUMG00000097047.2 +49301 chr5 HAVANA gene 58491435 58497090 3273.0 + 0 ENSG00000175857.8 protein_coding GAPT 2 OTTHUMG00000131219.4 +49302 chr5 HAVANA gene 58503295 58503700 406.0 + 0 ENSG00000271257.1 processed_pseudogene AC008814.1 1 OTTHUMG00000184556.1 pseudo_consens +49303 chr5 ENSEMBL gene 58530043 58530109 67.0 - 0 ENSG00000265699.1 miRNA MIR548AE2 3 +49304 chr5 HAVANA gene 58541567 58558243 1184.0 - 0 ENSG00000250127.1 lincRNA LINC02108 1 OTTHUMG00000162427.1 +49305 chr5 HAVANA gene 58741581 58817099 697.0 - 0 ENSG00000248475.5 antisense AC016642.1 2 OTTHUMG00000162204.1 +49306 chr5 HAVANA gene 58822503 58823714 897.0 + 0 ENSG00000240412.1 processed_pseudogene RPL5P15 1 OTTHUMG00000157698.1 pseudo_consens,overlapping_locus +49307 chr5 HAVANA gene 58582221 58859394 9656.0 + 0 ENSG00000152932.7 protein_coding RAB3C 2 OTTHUMG00000097053.3 overlapping_locus +49308 chr5 HAVANA gene 58846885 58863414 451.0 - 0 ENSG00000248733.1 antisense AC008852.1 2 OTTHUMG00000162203.1 +49309 chr5 HAVANA gene 59039761 59063503 729.0 + 0 ENSG00000247345.2 antisense AC092343.1 1 OTTHUMG00000162414.1 +49310 chr5 HAVANA gene 59314110 59314800 691.0 + 0 ENSG00000276214.1 processed_pseudogene AC008833.1 2 OTTHUMG00000187583.1 +49311 chr5 HAVANA gene 59528861 59529251 391.0 + 0 ENSG00000251306.1 processed_pseudogene NDUFB4P2 1 OTTHUMG00000162215.1 pseudo_consens +49312 chr5 ENSEMBL gene 59703606 59703703 98.0 - 0 ENSG00000202601.4 miRNA MIR582 3 +49313 chr5 HAVANA gene 60021249 60033020 717.0 + 0 ENSG00000248935.1 antisense AC034234.1 2 OTTHUMG00000162214.1 +49314 chr5 ENSEMBL gene 60304047 60304151 105.0 - 0 ENSG00000202017.1 snRNA RNU6-806P 3 +49315 chr5 HAVANA gene 60429903 60430276 374.0 - 0 ENSG00000213896.4 processed_pseudogene AC109486.1 1 OTTHUMG00000157700.1 pseudo_consens,overlapping_locus +49316 chr5 HAVANA gene 60459848 60460739 892.0 - 0 ENSG00000214244.4 processed_pseudogene SETP21 1 OTTHUMG00000162435.1 pseudo_consens,overlapping_locus +49317 chr5 ENSEMBL gene 60487713 60487929 217.0 + 0 ENSG00000273701.1 misc_RNA RF02159 3 +49318 chr5 ENSEMBL gene 60488078 60488327 250.0 + 0 ENSG00000275634.1 misc_RNA RF02160 3 +49319 chr5 HAVANA gene 58969038 60522120 16308.0 - 0 ENSG00000113448.18 protein_coding PDE4D 2 OTTHUMG00000162218.8 ncRNA_host,overlapping_locus +49320 chr5 ENSEMBL gene 60546219 60546349 131.0 + 0 ENSG00000276233.1 misc_RNA RF02161 3 +49321 chr5 HAVANA gene 60487713 60547657 9752.0 + 0 ENSG00000152931.7 lincRNA PART1 2 OTTHUMG00000162213.3 ncRNA_host +49322 chr5 HAVANA gene 60630514 60630973 460.0 + 0 ENSG00000251303.1 processed_pseudogene CAB39P1 1 OTTHUMG00000162415.1 pseudo_consens +49323 chr5 HAVANA gene 60596912 60700190 3806.0 - 0 ENSG00000035499.12 protein_coding DEPDC1B 2 OTTHUMG00000097083.3 +49324 chr5 HAVANA gene 60743563 60744970 1408.0 - 0 ENSG00000250148.1 processed_pseudogene KRT8P31 1 OTTHUMG00000162434.1 pseudo_consens +49325 chr5 HAVANA gene 60751791 60844389 4576.0 - 0 ENSG00000164181.13 protein_coding ELOVL7 1 OTTHUMG00000162254.2 +49326 chr5 HAVANA gene 60866457 60866935 479.0 - 0 ENSG00000272308.1 lincRNA AC104113.1 2 OTTHUMG00000185498.1 +49327 chr5 HAVANA gene 60891935 60893577 1643.0 - 0 ENSG00000215032.2 processed_pseudogene GNL3LP1 1 OTTHUMG00000153832.1 pseudo_consens,overlapping_locus +49328 chr5 HAVANA gene 60917490 60919573 408.0 + 0 ENSG00000233847.1 antisense AC022445.1 2 OTTHUMG00000153833.1 +49329 chr5 HAVANA gene 60873831 60945073 4847.0 - 0 ENSG00000049167.14 protein_coding ERCC8 2 OTTHUMG00000097741.4 overlapping_locus +49330 chr5 HAVANA gene 61114432 61116753 2322.0 - 0 ENSG00000279985.1 TEC AC008498.2 2 OTTHUMG00000187224.1 +49331 chr5 HAVANA gene 61145846 61146376 531.0 - 0 ENSG00000276945.1 unprocessed_pseudogene AC008498.1 2 OTTHUMG00000187584.1 +49332 chr5 HAVANA gene 60945129 61153037 1017.0 + 0 ENSG00000164182.10 protein_coding NDUFAF2 2 OTTHUMG00000131221.3 +49333 chr5 HAVANA gene 61157709 61162474 2889.0 - 0 ENSG00000188725.7 protein_coding SMIM15 2 OTTHUMG00000162241.1 +49334 chr5 HAVANA gene 61162070 61232040 796.0 + 0 ENSG00000251279.1 antisense SMIM15-AS1 2 OTTHUMG00000162242.1 +49335 chr5 HAVANA gene 61201309 61264929 1036.0 - 0 ENSG00000249279.5 lincRNA LINC02057 1 OTTHUMG00000162244.1 +49336 chr5 HAVANA gene 61347126 61347716 591.0 + 0 ENSG00000251682.1 processed_pseudogene AC122718.2 1 OTTHUMG00000162250.1 pseudo_consens,overlapping_locus +49337 chr5 HAVANA gene 61375112 61375855 744.0 + 0 ENSG00000250461.1 processed_pseudogene AC122718.1 1 OTTHUMG00000162243.1 pseudo_consens,overlapping_locus +49338 chr5 HAVANA gene 61390668 61391871 1204.0 - 0 ENSG00000213891.3 processed_pseudogene RPL3P6 1 OTTHUMG00000157703.1 pseudo_consens +49339 chr5 HAVANA gene 61332273 61546170 5501.0 + 0 ENSG00000130449.5 protein_coding ZSWIM6 1 OTTHUMG00000162388.1 overlapping_locus +49340 chr5 ENSEMBL gene 61664145 61664239 95.0 - 0 ENSG00000212215.1 snRNA RNU6-913P 3 +49341 chr5 HAVANA gene 61658474 61698432 3473.0 - 0 ENSG00000248529.5 antisense AC026746.1 2 OTTHUMG00000162438.1 ncRNA_host +49342 chr5 HAVANA gene 61732774 61735669 1505.0 - 0 ENSG00000251575.2 lincRNA C5orf64-AS1 2 OTTHUMG00000162439.2 +49343 chr5 HAVANA gene 61637708 61751763 4043.0 + 0 ENSG00000178722.12 processed_transcript C5orf64 2 OTTHUMG00000162412.1 +49344 chr5 HAVANA gene 61831947 61833024 1078.0 - 0 ENSG00000249878.1 processed_pseudogene AC026434.2 1 OTTHUMG00000162295.1 pseudo_consens +49345 chr5 HAVANA gene 61878109 61886129 454.0 + 0 ENSG00000248199.1 lincRNA AC026434.1 1 OTTHUMG00000162296.1 +49346 chr5 ENSEMBL gene 62146665 62146946 282.0 + 0 ENSG00000251983.1 misc_RNA RN7SKP157 3 +49347 chr5 HAVANA gene 62387254 62403939 3736.0 - 0 ENSG00000086189.9 protein_coding DIMT1 2 OTTHUMG00000131223.3 +49348 chr5 ENSEMBL gene 62443176 62443282 107.0 + 0 ENSG00000199279.1 snRNA RNU6-661P 3 +49349 chr5 HAVANA gene 62512246 62512482 237.0 - 0 ENSG00000268942.2 processed_pseudogene CKS1BP3 2 OTTHUMG00000187230.1 +49350 chr5 HAVANA gene 62306162 62537249 4774.0 + 0 ENSG00000068796.16 protein_coding KIF2A 1 OTTHUMG00000097755.6 ncRNA_host,overlapping_locus +49351 chr5 HAVANA gene 62561859 62562216 358.0 - 0 ENSG00000241991.1 processed_pseudogene AC114982.2 1 OTTHUMG00000157708.1 pseudo_consens +49352 chr5 HAVANA gene 62575951 62576271 321.0 - 0 ENSG00000240436.1 processed_pseudogene AC114982.1 1 OTTHUMG00000157707.1 pseudo_consens +49353 chr5 HAVANA gene 62578735 62581448 2249.0 + 0 ENSG00000186105.7 protein_coding LRRC70 1 OTTHUMG00000154401.5 overlapping_locus +49354 chr5 HAVANA gene 62403972 62628582 7540.0 + 0 ENSG00000086200.16 protein_coding IPO11 1 OTTHUMG00000154400.5 ncRNA_host,overlapping_locus +49355 chr5 HAVANA gene 62776877 62777263 387.0 - 0 ENSG00000217416.4 processed_pseudogene ISCA1P1 2 OTTHUMG00000153236.1 +49356 chr5 HAVANA gene 63022919 63023489 571.0 - 0 ENSG00000249579.2 processed_pseudogene AC113420.1 1 OTTHUMG00000162265.2 pseudo_consens +49357 chr5 HAVANA gene 63301523 63302056 300.0 + 0 ENSG00000248185.1 processed_pseudogene AC025445.1 2 OTTHUMG00000162266.1 +49358 chr5 HAVANA gene 63960356 63962507 1819.0 - 0 ENSG00000178394.4 protein_coding HTR1A 2 OTTHUMG00000162279.3 overlapping_locus,retrogene +49359 chr5 HAVANA gene 63957893 63981043 219.0 - 0 ENSG00000248285.1 sense_overlapping AC122707.1 2 OTTHUMG00000162289.1 overlapping_locus +49360 chr5 HAVANA gene 64165844 64372869 5434.0 + 0 ENSG00000164197.11 protein_coding RNF180 2 OTTHUMG00000162278.2 +49361 chr5 HAVANA gene 64404512 64486615 1100.0 - 0 ENSG00000236068.2 unitary_pseudogene AC091862.1 2 OTTHUMG00000154702.2 +49362 chr5 ENSEMBL gene 64539504 64539792 289.0 + 0 ENSG00000242547.3 misc_RNA RN7SL169P 3 +49363 chr5 ENSEMBL gene 64573569 64573670 102.0 + 0 ENSG00000201869.1 snRNA RNU6-294P 3 +49364 chr5 HAVANA gene 64506257 64612312 4379.0 + 0 ENSG00000186479.4 protein_coding RGS7BP 2 OTTHUMG00000162293.1 ncRNA_host +49365 chr5 HAVANA gene 64674853 64675387 535.0 + 0 ENSG00000224296.3 processed_pseudogene MRPL49P1 1 OTTHUMG00000162389.1 pseudo_consens +49366 chr5 HAVANA gene 64690308 64718090 1348.0 + 0 ENSG00000145642.11 protein_coding SHISAL2B 2 OTTHUMG00000162292.2 +49367 chr5 HAVANA gene 64718144 64768685 7537.0 - 0 ENSG00000153006.15 protein_coding SREK1IP1 2 OTTHUMG00000162291.6 +49368 chr5 HAVANA gene 64768930 65018763 3740.0 + 0 ENSG00000153015.15 protein_coding CWC27 1 OTTHUMG00000074069.7 +49369 chr5 HAVANA gene 65020038 65020551 514.0 + 0 ENSG00000272370.1 lincRNA AC092354.2 2 OTTHUMG00000185501.1 +49370 chr5 HAVANA gene 65020614 65020989 376.0 + 0 ENSG00000272354.1 lincRNA AC092354.1 2 OTTHUMG00000185502.1 +49371 chr5 ENSEMBL gene 65123369 65123474 106.0 + 0 ENSG00000207439.1 misc_RNA RF00019 3 +49372 chr5 HAVANA gene 65209921 65210948 737.0 + 0 ENSG00000248288.1 processed_pseudogene AC008868.1 1 OTTHUMG00000162553.1 pseudo_consens +49373 chr5 HAVANA gene 65251127 65251784 658.0 - 0 ENSG00000250732.1 processed_pseudogene RPEP1 1 OTTHUMG00000162552.1 pseudo_consens,overlapping_locus +49374 chr5 HAVANA gene 65415353 65416222 870.0 + 0 ENSG00000205644.5 processed_pseudogene AC025186.1 1 OTTHUMG00000157734.1 pseudo_consens +49375 chr5 HAVANA gene 65148736 65481920 8567.0 - 0 ENSG00000049192.14 protein_coding ADAMTS6 2 OTTHUMG00000074079.7 overlapping_locus +49376 chr5 HAVANA gene 65486444 65487048 365.0 - 0 ENSG00000250081.1 lincRNA AC025176.1 2 OTTHUMG00000162551.1 +49377 chr5 HAVANA gene 65517766 65563171 4312.0 - 0 ENSG00000123219.12 protein_coding CENPK 2 OTTHUMG00000131227.5 +49378 chr5 HAVANA gene 65563236 65587549 3777.0 + 0 ENSG00000113593.11 protein_coding PPWD1 2 OTTHUMG00000131226.5 +49379 chr5 ENSEMBL gene 65604661 65604761 101.0 - 0 ENSG00000207352.1 snRNA RNU6-540P 3 +49380 chr5 HAVANA gene 65589680 65625975 4807.0 - 0 ENSG00000113595.14 protein_coding TRIM23 1 OTTHUMG00000097802.4 ncRNA_host +49381 chr5 HAVANA gene 65624765 65630891 1964.0 + 0 ENSG00000253251.2 protein_coding SHLD3 1 OTTHUMG00000162694.6 overlapping_locus +49382 chr5 HAVANA gene 65624716 65666233 7049.0 + 0 ENSG00000113597.17 protein_coding TRAPPC13 2 OTTHUMG00000163649.1 overlapping_locus +49383 chr5 HAVANA gene 65665928 65723035 5748.0 - 0 ENSG00000197860.9 protein_coding SGTB 2 OTTHUMG00000097801.3 +49384 chr5 HAVANA gene 65732973 65733654 682.0 + 0 ENSG00000251648.2 processed_pseudogene AC008958.1 2 OTTHUMG00000162730.2 overlapping_locus +49385 chr5 HAVANA gene 65722196 65871725 10948.0 + 0 ENSG00000123213.22 protein_coding NLN 1 OTTHUMG00000097803.6 overlapping_locus +49386 chr5 HAVANA gene 65924629 65925135 507.0 - 0 ENSG00000269961.1 lincRNA AC010359.1 2 OTTHUMG00000184016.1 +49387 chr5 ENSEMBL gene 65961183 65961319 137.0 - 0 ENSG00000252904.1 snoRNA RF00598 3 +49388 chr5 HAVANA gene 65926475 66082549 10216.0 + 0 ENSG00000112851.14 protein_coding ERBIN 1 OTTHUMG00000097808.3 +49389 chr5 HAVANA gene 66144156 66144795 481.0 - 0 ENSG00000253744.1 antisense AC025442.1 2 OTTHUMG00000164088.1 +49390 chr5 HAVANA gene 66139971 66183615 18240.0 + 0 ENSG00000153914.15 protein_coding SREK1 2 OTTHUMG00000097809.4 +49391 chr5 HAVANA gene 66206212 66209447 562.0 - 0 ENSG00000248846.2 lincRNA LINC02065 2 OTTHUMG00000164089.1 +49392 chr5 HAVANA gene 66298468 66322944 445.0 + 0 ENSG00000251391.4 lincRNA AC113378.1 2 OTTHUMG00000164090.1 +49393 chr5 HAVANA gene 66507544 66511604 661.0 - 0 ENSG00000250313.2 lincRNA LINC02229 1 OTTHUMG00000162359.2 +49394 chr5 HAVANA gene 66572057 66572546 490.0 + 0 ENSG00000234838.3 processed_pseudogene PPIAP78 1 OTTHUMG00000162362.2 pseudo_consens +49395 chr5 HAVANA gene 66622868 66623177 310.0 + 0 ENSG00000248803.1 processed_pseudogene AC092349.1 1 OTTHUMG00000162360.2 pseudo_consens,overlapping_locus +49396 chr5 HAVANA gene 66662331 66662988 658.0 + 0 ENSG00000249057.1 sense_intronic MAST4-IT1 2 OTTHUMG00000162486.1 overlapping_locus +49397 chr5 HAVANA gene 67001383 67003953 777.0 - 0 ENSG00000229666.1 antisense MAST4-AS1 1 OTTHUMG00000152480.1 +49398 chr5 HAVANA gene 66596361 67169595 14675.0 + 0 ENSG00000069020.18 protein_coding MAST4 1 OTTHUMG00000152471.6 overlapping_locus +49399 chr5 HAVANA gene 67179613 67196799 5668.0 - 0 ENSG00000134061.5 protein_coding CD180 2 OTTHUMG00000131229.3 +49400 chr5 HAVANA gene 67268022 67270182 509.0 + 0 ENSG00000251206.1 lincRNA AC010420.1 2 OTTHUMG00000162351.1 +49401 chr5 HAVANA gene 67463809 67475592 837.0 - 0 ENSG00000250978.5 processed_transcript AC079467.1 2 OTTHUMG00000162358.1 +49402 chr5 HAVANA gene 67608654 67609130 477.0 + 0 ENSG00000239870.1 processed_pseudogene AC112206.1 1 OTTHUMG00000157735.1 pseudo_consens,overlapping_locus +49403 chr5 HAVANA gene 67636382 67638942 2561.0 + 0 ENSG00000249238.1 processed_pseudogene BCL9P1 1 OTTHUMG00000162353.1 pseudo_consens,overlapping_locus +49404 chr5 HAVANA gene 67632266 67646789 641.0 - 0 ENSG00000249736.1 lincRNA LINC02242 1 OTTHUMG00000162355.1 +49405 chr5 HAVANA gene 67690033 67690437 405.0 - 0 ENSG00000250669.1 processed_pseudogene AC112206.4 1 OTTHUMG00000162356.1 pseudo_consens +49406 chr5 HAVANA gene 67692812 67693200 389.0 - 0 ENSG00000249721.1 processed_pseudogene AC112206.3 2 OTTHUMG00000162357.1 +49407 chr5 HAVANA gene 67379378 67805238 3250.0 + 0 ENSG00000249364.5 lincRNA AC112206.2 2 OTTHUMG00000162352.1 overlapping_locus +49408 chr5 HAVANA gene 67855735 67855986 252.0 + 0 ENSG00000273860.1 processed_pseudogene AC024581.2 2 OTTHUMG00000187587.1 +49409 chr5 HAVANA gene 67800740 67890096 566.0 - 0 ENSG00000249894.1 lincRNA AC024581.1 2 OTTHUMG00000162354.1 overlapping_locus +49410 chr5 HAVANA gene 67699429 67902600 737.0 - 0 ENSG00000250421.5 lincRNA AC106798.1 2 OTTHUMG00000162350.1 overlapping_locus +49411 chr5 HAVANA gene 68087161 68087494 334.0 - 0 ENSG00000253801.2 processed_pseudogene AC010376.1 2 OTTHUMG00000164189.2 +49412 chr5 ENSEMBL gene 68159061 68159146 86.0 - 0 ENSG00000252108.1 snRNA RNU6-1232P 3 +49413 chr5 HAVANA gene 68159218 68159893 676.0 - 0 ENSG00000213864.3 processed_pseudogene EEF1B2P2 1 OTTHUMG00000164190.1 pseudo_consens +49414 chr5 HAVANA gene 68189876 68198407 454.0 + 0 ENSG00000253787.1 lincRNA LINC02219 2 OTTHUMG00000164191.1 +49415 chr5 HAVANA gene 68215720 68301821 10767.0 + 0 ENSG00000145675.14 protein_coding PIK3R1 1 OTTHUMG00000131251.3 +49416 chr5 HAVANA gene 68374765 68375292 371.0 + 0 ENSG00000251044.2 lincRNA AC024579.1 2 OTTHUMG00000162485.2 +49417 chr5 HAVANA gene 68430427 68434481 410.0 - 0 ENSG00000248884.1 lincRNA AC010280.2 2 OTTHUMG00000162337.1 +49418 chr5 HAVANA gene 68523878 68530007 587.0 + 0 ENSG00000249588.1 lincRNA AC010280.3 1 OTTHUMG00000162331.1 +49419 chr5 HAVANA gene 68531690 68533530 340.0 - 0 ENSG00000248359.1 lincRNA AC010280.1 1 OTTHUMG00000162335.1 +49420 chr5 HAVANA gene 68854910 68855085 176.0 - 0 ENSG00000250289.1 processed_pseudogene VWA8P1 2 OTTHUMG00000162334.2 overlapping_locus +49421 chr5 ENSEMBL gene 68873954 68874087 134.0 + 0 ENSG00000212249.2 snoRNA RF00096 3 +49422 chr5 HAVANA gene 68832585 68962158 499.0 - 0 ENSG00000249335.1 lincRNA AC093523.1 2 OTTHUMG00000162332.1 overlapping_locus +49423 chr5 HAVANA gene 68963246 68967845 417.0 + 0 ENSG00000250066.1 lincRNA AC093248.1 1 OTTHUMG00000162333.1 +49424 chr5 ENSEMBL gene 68970439 68970752 314.0 - 0 ENSG00000276309.1 misc_RNA RN7SKP251 3 +49425 chr5 HAVANA gene 68970692 69030165 1196.0 - 0 ENSG00000249352.4 lincRNA LINC02198 1 OTTHUMG00000162336.3 +49426 chr5 HAVANA gene 69038518 69043821 438.0 - 0 ENSG00000250237.1 lincRNA AC010273.2 2 OTTHUMG00000162382.1 +49427 chr5 HAVANA gene 69068925 69069200 276.0 - 0 ENSG00000249183.1 processed_pseudogene SUMO2P4 1 OTTHUMG00000162383.1 pseudo_consens +49428 chr5 HAVANA gene 69093646 69131069 5784.0 + 0 ENSG00000145740.18 protein_coding SLC30A5 1 OTTHUMG00000131253.5 +49429 chr5 HAVANA gene 69113112 69136394 946.0 - 0 ENSG00000248664.1 antisense AC010273.1 2 OTTHUMG00000162416.2 +49430 chr5 ENSEMBL gene 69160808 69160939 132.0 + 0 ENSG00000280894.1 snoRNA SNORA50D 3 +49431 chr5 ENSEMBL gene 69160806 69160939 134.0 + 0 ENSG00000220986.1 snoRNA SNORA50D 3 +49432 chr5 HAVANA gene 69167010 69178245 2558.0 + 0 ENSG00000134057.14 protein_coding CCNB1 1 OTTHUMG00000097817.4 +49433 chr5 HAVANA gene 69186359 69189452 3094.0 - 0 ENSG00000280187.1 TEC AC022107.1 2 OTTHUMG00000163000.1 +49434 chr5 HAVANA gene 69189548 69210357 2244.0 + 0 ENSG00000153044.9 protein_coding CENPH 2 OTTHUMG00000097816.2 +49435 chr5 HAVANA gene 69217760 69230129 1530.0 + 0 ENSG00000134056.11 protein_coding MRPS36 2 OTTHUMG00000162443.2 +49436 chr5 HAVANA gene 69234795 69277430 2416.0 + 0 ENSG00000134058.11 protein_coding CDK7 2 OTTHUMG00000099358.7 +49437 chr5 HAVANA gene 69313371 69313872 502.0 - 0 ENSG00000213830.3 processed_pseudogene CFL1P5 1 OTTHUMG00000162502.2 pseudo_consens,overlapping_locus +49438 chr5 HAVANA gene 69280175 69332809 7932.0 - 0 ENSG00000183323.12 protein_coding CCDC125 1 OTTHUMG00000131259.6 overlapping_locus +49439 chr5 HAVANA gene 69333929 69334249 321.0 + 0 ENSG00000215006.4 processed_pseudogene CHCHD2P2 1 OTTHUMG00000162501.1 pseudo_consens +49440 chr5 HAVANA gene 69349936 69350445 510.0 + 0 ENSG00000271045.1 processed_pseudogene NDUFB9P1 1 OTTHUMG00000184558.1 pseudo_consens +49441 chr5 HAVANA gene 69364743 69370013 2577.0 - 0 ENSG00000273841.4 protein_coding TAF9 2 OTTHUMG00000099359.7 overlapping_locus +49442 chr5 HAVANA gene 69350984 69370013 2162.0 - 0 ENSG00000085231.13 protein_coding AK6 2 OTTHUMG00000187252.2 overlapping_locus +49443 chr5 HAVANA gene 69369293 69414801 4159.0 + 0 ENSG00000152942.18 protein_coding RAD17 1 OTTHUMG00000099357.11 +49444 chr5 HAVANA gene 69415065 69444330 5366.0 + 0 ENSG00000152939.15 protein_coding MARVELD2 2 OTTHUMG00000162512.7 +49445 chr5 HAVANA gene 69469883 69470136 254.0 + 0 ENSG00000244717.1 processed_pseudogene RPS27P14 1 OTTHUMG00000157737.1 pseudo_consens +49446 chr5 ENSEMBL gene 69478997 69479265 269.0 - 0 ENSG00000266477.2 misc_RNA RN7SL616P 3 +49447 chr5 HAVANA gene 69477472 69502466 427.0 - 0 ENSG00000249295.1 antisense AC145146.1 2 OTTHUMG00000162564.1 ncRNA_host +49448 chr5 ENSEMBL gene 69530613 69530717 105.0 - 0 ENSG00000212260.1 snRNA RNU6-724P 3 +49449 chr5 HAVANA gene 69492292 69558104 6761.0 + 0 ENSG00000197822.10 protein_coding OCLN 2 OTTHUMG00000099356.3 +49450 chr5 HAVANA gene 69560208 69594723 6989.0 + 0 ENSG00000183474.15 protein_coding GTF2H2C 2 OTTHUMG00000162365.6 +49451 chr5 HAVANA gene 69607099 69624049 1073.0 + 0 ENSG00000248477.6 transcribed_unprocessed_pseudogene AC139495.1 2 OTTHUMG00000162451.4 +49452 chr5 HAVANA gene 69631963 69636399 4437.0 + 0 ENSG00000250138.4 unprocessed_pseudogene AC139495.3 1 OTTHUMG00000162367.3 pseudo_consens +49453 chr5 HAVANA gene 69653248 69654334 1087.0 + 0 ENSG00000248769.1 unprocessed_pseudogene AC139495.2 1 OTTHUMG00000162418.2 pseudo_consens +49454 chr5 HAVANA gene 69639459 69679259 1296.0 - 0 ENSG00000253203.6 transcribed_unprocessed_pseudogene GUSBP3 2 OTTHUMG00000162368.5 +49455 chr5 HAVANA gene 69898867 69903198 4332.0 - 0 ENSG00000251158.1 unprocessed_pseudogene AC131392.2 1 OTTHUMG00000162369.2 pseudo_consens +49456 chr5 HAVANA gene 69875271 69920867 633.0 + 0 ENSG00000198237.8 unprocessed_pseudogene AC131392.1 2 OTTHUMG00000164581.1 +49457 chr5 HAVANA gene 69985204 69985501 298.0 - 0 ENSG00000249230.1 unprocessed_pseudogene CDH12P2 2 OTTHUMG00000162392.3 +49458 chr5 HAVANA gene 70025247 70043113 3051.0 + 0 ENSG00000205572.9 protein_coding SERF1B 2 OTTHUMG00000162391.3 +49459 chr5 HAVANA gene 70055820 70057416 1597.0 - 0 ENSG00000285151.1 antisense AC140134.2 2 OTTHUMG00000192401.1 +49460 chr5 HAVANA gene 70049612 70078522 3011.0 + 0 ENSG00000205571.13 protein_coding SMN2 2 OTTHUMG00000099389.7 +49461 chr5 HAVANA gene 70094659 70128434 3544.0 - 0 ENSG00000179978.11 unprocessed_pseudogene AC140134.1 2 OTTHUMG00000162450.4 +49462 chr5 HAVANA gene 70132679 70132973 295.0 + 0 ENSG00000253492.1 unprocessed_pseudogene CDH12P3 2 OTTHUMG00000162449.3 +49463 chr5 HAVANA gene 70197255 70207745 584.0 - 0 ENSG00000254701.3 unprocessed_pseudogene AC138866.2 2 OTTHUMG00000162444.4 +49464 chr5 HAVANA gene 70219918 70258930 497.0 - 0 ENSG00000253816.3 unprocessed_pseudogene AC138866.1 2 OTTHUMG00000162755.2 +49465 chr5 HAVANA gene 70415352 70448015 3979.0 + 0 ENSG00000226259.10 transcribed_unprocessed_pseudogene GTF2H2B 2 OTTHUMG00000162394.8 +49466 chr5 HAVANA gene 70449636 70450353 718.0 + 0 ENSG00000269983.1 lincRNA AC146944.4 2 OTTHUMG00000184032.1 +49467 chr5 HAVANA gene 70462244 70479215 1104.0 + 0 ENSG00000250687.6 transcribed_unprocessed_pseudogene AC146944.2 2 OTTHUMG00000162475.2 +49468 chr5 HAVANA gene 70495100 70500903 371.0 - 0 ENSG00000253333.1 unprocessed_pseudogene AC146944.3 2 OTTHUMG00000162474.2 +49469 chr5 HAVANA gene 70516387 70555266 418.0 - 0 ENSG00000196302.5 unprocessed_pseudogene AC146944.1 2 OTTHUMG00000162445.2 +49470 chr5 HAVANA gene 70751184 70795914 640.0 + 0 ENSG00000253366.3 unprocessed_pseudogene AC139272.1 2 OTTHUMG00000162420.3 +49471 chr5 HAVANA gene 70860285 70860579 295.0 - 0 ENSG00000254335.1 unprocessed_pseudogene CDH12P1 2 OTTHUMG00000164541.1 +49472 chr5 HAVANA gene 70900665 70918530 3285.0 + 0 ENSG00000172058.15 protein_coding SERF1A 2 OTTHUMG00000162419.6 +49473 chr5 HAVANA gene 70931244 70932840 1597.0 - 0 ENSG00000285204.1 antisense AC139834.1 2 OTTHUMG00000192402.1 +49474 chr5 HAVANA gene 70925030 70953942 3097.0 + 0 ENSG00000172062.16 protein_coding SMN1 2 OTTHUMG00000099361.6 +49475 chr5 HAVANA gene 70968483 71025114 9513.0 - 0 ENSG00000249437.7 protein_coding NAIP 2 OTTHUMG00000163318.7 +49476 chr5 HAVANA gene 71032670 71067689 8676.0 - 0 ENSG00000145736.14 protein_coding GTF2H2 2 OTTHUMG00000164542.4 +49477 chr5 HAVANA gene 71074225 71093193 679.0 - 0 ENSG00000230847.4 unprocessed_pseudogene OCLNP1 2 OTTHUMG00000162521.3 +49478 chr5 HAVANA gene 71102898 71128753 2851.0 - 0 ENSG00000251634.2 unprocessed_pseudogene AC145138.1 2 OTTHUMG00000099405.6 +49479 chr5 HAVANA gene 71132993 71133287 295.0 + 0 ENSG00000253900.1 unprocessed_pseudogene CDH12P4 2 OTTHUMG00000164582.1 +49480 chr5 HAVANA gene 71197646 71208130 584.0 - 0 ENSG00000215630.6 unprocessed_pseudogene GUSBP9 1 OTTHUMG00000164583.1 pseudo_consens +49481 chr5 HAVANA gene 71220356 71259238 423.0 - 0 ENSG00000235558.3 unprocessed_pseudogene GUSBP9 2 OTTHUMG00000164585.1 +49482 chr5 HAVANA gene 71372676 71374898 501.0 - 0 ENSG00000253985.1 lincRNA AC145141.2 2 OTTHUMG00000163798.1 overlapping_locus +49483 chr5 HAVANA gene 71375786 71385993 2854.0 + 0 ENSG00000169040.14 transcribed_unprocessed_pseudogene PMCHL2 2 OTTHUMG00000099413.5 +49484 chr5 HAVANA gene 71351855 71446342 2767.0 - 0 ENSG00000250387.2 lincRNA LINC02197 2 OTTHUMG00000163654.1 overlapping_locus +49485 chr5 HAVANA gene 71445616 71446569 567.0 + 0 ENSG00000249981.1 lincRNA AC145141.1 2 OTTHUMG00000163315.1 +49486 chr5 HAVANA gene 71475761 71476316 556.0 - 0 ENSG00000253536.1 processed_pseudogene AC138832.1 1 OTTHUMG00000163655.1 pseudo_consens +49487 chr5 HAVANA gene 71537652 71537846 195.0 - 0 ENSG00000247911.3 processed_pseudogene HMGN1P12 2 OTTHUMG00000163799.1 +49488 chr5 HAVANA gene 71455615 71567820 12436.0 + 0 ENSG00000145734.18 protein_coding BDP1 2 OTTHUMG00000162506.22 +49489 chr5 HAVANA gene 71587288 71658704 6034.0 + 0 ENSG00000131844.15 protein_coding MCCC2 1 OTTHUMG00000162505.10 +49490 chr5 HAVANA gene 71719163 71721048 1216.0 + 0 ENSG00000164326.4 protein_coding CARTPT 2 OTTHUMG00000131261.3 +49491 chr5 HAVANA gene 71754378 71756301 836.0 - 0 ENSG00000278824.1 processed_pseudogene AC143336.1 2 OTTHUMG00000187590.1 +49492 chr5 HAVANA gene 72095855 72108000 2641.0 - 0 ENSG00000285804.1 antisense AC093218.1 2 OTTHUMG00000192631.1 +49493 chr5 ENSEMBL gene 72169467 72169540 74.0 + 0 ENSG00000264099.1 miRNA MIR4803 3 +49494 chr5 HAVANA gene 72107234 72209570 12630.0 + 0 ENSG00000131711.14 protein_coding MAP1B 1 OTTHUMG00000100952.12 ncRNA_host +49495 chr5 ENSEMBL gene 72314397 72314688 292.0 - 0 ENSG00000244748.3 misc_RNA RN7SL153P 3 +49496 chr5 HAVANA gene 72219409 72320646 6511.0 - 0 ENSG00000113048.16 protein_coding MRPS27 2 OTTHUMG00000100951.9 ncRNA_host +49497 chr5 HAVANA gene 72320367 72368395 12115.0 + 0 ENSG00000049883.14 protein_coding PTCD2 1 OTTHUMG00000100953.11 +49498 chr5 HAVANA gene 72381794 72382393 600.0 + 0 ENSG00000244061.1 processed_pseudogene AC093278.1 1 OTTHUMG00000157738.1 pseudo_consens +49499 chr5 HAVANA gene 72417489 72418335 847.0 + 0 ENSG00000251108.1 processed_pseudogene YBX1P5 2 OTTHUMG00000163415.1 +49500 chr5 HAVANA gene 72439903 72442387 2485.0 - 0 ENSG00000261269.1 sense_overlapping AC093278.2 2 OTTHUMG00000173465.1 +49501 chr5 HAVANA gene 72442652 72507727 3975.0 - 0 ENSG00000178175.11 protein_coding ZNF366 1 OTTHUMG00000100965.5 +49502 chr5 HAVANA gene 72574120 72660669 818.0 - 0 ENSG00000248371.5 lincRNA LINC02056 2 OTTHUMG00000163319.1 +49503 chr5 HAVANA gene 72725419 72726151 733.0 + 0 ENSG00000226544.4 processed_pseudogene RPL7P22 1 OTTHUMG00000157744.3 pseudo_consens +49504 chr5 HAVANA gene 72733833 72734209 377.0 + 0 ENSG00000223497.1 unitary_pseudogene AC063979.1 2 OTTHUMG00000154742.1 +49505 chr5 HAVANA gene 72687112 72762727 1081.0 - 0 ENSG00000251613.3 lincRNA AC063979.2 1 OTTHUMG00000163316.4 +49506 chr5 ENSEMBL gene 72768702 72768811 110.0 + 0 ENSG00000206770.1 misc_RNA RF00019 3 +49507 chr5 HAVANA gene 72794405 72816565 493.0 - 0 ENSG00000249085.1 antisense AC035140.1 2 OTTHUMG00000162494.1 +49508 chr5 ENSEMBL gene 72878591 72878663 73.0 + 0 ENSG00000263593.1 miRNA MIR4804 3 +49509 chr5 HAVANA gene 72878868 72879185 318.0 - 0 ENSG00000242602.1 processed_pseudogene AC008953.1 1 OTTHUMG00000157746.1 pseudo_consens +49510 chr5 HAVANA gene 72816312 72916733 11977.0 + 0 ENSG00000083312.17 protein_coding TNPO1 2 OTTHUMG00000100967.7 ncRNA_host +49511 chr5 HAVANA gene 72953635 72954274 640.0 - 0 ENSG00000271926.1 lincRNA AC008972.1 2 OTTHUMG00000185522.1 +49512 chr5 HAVANA gene 72955206 72955699 494.0 - 0 ENSG00000272081.1 lincRNA AC008972.2 2 OTTHUMG00000185523.1 +49513 chr5 HAVANA gene 72996920 72997642 723.0 + 0 ENSG00000251467.1 processed_pseudogene AC020893.2 1 OTTHUMG00000162496.1 pseudo_consens,overlapping_locus +49514 chr5 HAVANA gene 73020700 73021279 580.0 - 0 ENSG00000248930.1 processed_pseudogene AC020893.1 1 OTTHUMG00000162437.1 pseudo_consens +49515 chr5 HAVANA gene 72955981 73090522 6127.0 + 0 ENSG00000157107.13 protein_coding FCHO2 2 OTTHUMG00000162413.7 overlapping_locus +49516 chr5 HAVANA gene 73120292 73131817 1535.0 + 0 ENSG00000157111.12 protein_coding TMEM171 2 OTTHUMG00000131269.3 +49517 chr5 HAVANA gene 73132008 73150592 449.0 - 0 ENSG00000251599.1 antisense AC116345.3 2 OTTHUMG00000162500.1 +49518 chr5 HAVANA gene 73152416 73152938 523.0 - 0 ENSG00000250747.1 processed_pseudogene AC116345.2 1 OTTHUMG00000162493.1 pseudo_consens +49519 chr5 HAVANA gene 73173195 73175143 1759.0 + 0 ENSG00000164325.7 protein_coding TMEM174 2 OTTHUMG00000131268.2 +49520 chr5 HAVANA gene 73213947 73294934 1494.0 + 0 ENSG00000249743.5 lincRNA AC116345.1 2 OTTHUMG00000162463.3 +49521 chr5 HAVANA gene 73337906 73338533 301.0 + 0 ENSG00000251543.1 lincRNA LINC02230 2 OTTHUMG00000162497.1 +49522 chr5 HAVANA gene 73382384 73410509 881.0 + 0 ENSG00000249149.2 transcribed_processed_pseudogene AC099522.1 2 OTTHUMG00000162498.3 +49523 chr5 HAVANA gene 73446357 73446984 424.0 + 0 ENSG00000247993.2 lincRNA FOXD1-AS1 2 OTTHUMG00000160932.1 +49524 chr5 HAVANA gene 73444827 73448527 2623.0 - 0 ENSG00000251493.4 protein_coding FOXD1 2 OTTHUMG00000162495.4 +49525 chr5 HAVANA gene 73451498 73453395 780.0 + 0 ENSG00000251604.1 lincRNA LINC01385 2 OTTHUMG00000162491.1 +49526 chr5 HAVANA gene 73454187 73472896 440.0 - 0 ENSG00000251324.1 antisense LINC01386 2 OTTHUMG00000162499.1 +49527 chr5 HAVANA gene 73497550 73498293 744.0 - 0 ENSG00000272525.1 lincRNA AC099522.2 2 OTTHUMG00000185524.1 +49528 chr5 HAVANA gene 73498408 73505635 2467.0 + 0 ENSG00000145741.15 protein_coding BTF3 1 OTTHUMG00000102031.6 +49529 chr5 HAVANA gene 73508685 73509254 570.0 + 0 ENSG00000255883.1 processed_pseudogene FUNDC2P1 2 OTTHUMG00000186591.1 +49530 chr5 HAVANA gene 73552335 73565686 2659.0 - 0 ENSG00000164331.9 protein_coding ANKRA2 1 OTTHUMG00000102030.3 +49531 chr5 HAVANA gene 73565443 73583377 6321.0 + 0 ENSG00000164338.9 protein_coding UTP15 1 OTTHUMG00000162453.3 +49532 chr5 HAVANA gene 73778039 73786491 556.0 - 0 ENSG00000249293.1 antisense AC091868.2 1 OTTHUMG00000162452.1 +49533 chr5 HAVANA gene 73803296 73803599 304.0 - 0 ENSG00000184084.7 processed_pseudogene AC091868.1 1 OTTHUMG00000162455.1 pseudo_consens +49534 chr5 ENSEMBL gene 73828012 73828073 62.0 - 0 ENSG00000238913.1 snRNA RNU7-196P 3 +49535 chr5 HAVANA gene 73626158 73941993 15617.0 + 0 ENSG00000214944.9 protein_coding ARHGEF28 1 OTTHUMG00000162454.3 +49536 chr5 HAVANA gene 73952940 73954014 1075.0 + 0 ENSG00000259968.3 lincRNA AC093283.1 2 OTTHUMG00000173474.1 +49537 chr5 HAVANA gene 74084068 74103216 577.0 - 0 ENSG00000248474.1 lincRNA LINC02122 1 OTTHUMG00000162456.1 +49538 chr5 HAVANA gene 74306410 74308325 389.0 - 0 ENSG00000248942.1 lincRNA LINC01335 1 OTTHUMG00000162459.2 +49539 chr5 ENSEMBL gene 74317986 74318285 300.0 + 0 ENSG00000244326.3 misc_RNA RN7SL814P 3 +49540 chr5 HAVANA gene 74322486 74328297 724.0 + 0 ENSG00000249343.1 lincRNA LINC01333 2 OTTHUMG00000162460.1 overlapping_locus +49541 chr5 HAVANA gene 74327995 74334766 502.0 - 0 ENSG00000250446.1 lincRNA LINC01332 1 OTTHUMG00000162458.1 +49542 chr5 HAVANA gene 74321631 74340152 550.0 + 0 ENSG00000251041.1 lincRNA AC106732.1 1 OTTHUMG00000162457.1 overlapping_locus +49543 chr5 HAVANA gene 74369376 74536976 568.0 - 0 ENSG00000248673.1 lincRNA LINC01331 2 OTTHUMG00000162462.1 +49544 chr5 HAVANA gene 74627406 74641424 5858.0 - 0 ENSG00000171617.13 protein_coding ENC1 1 OTTHUMG00000102059.7 +49545 chr5 HAVANA gene 74640023 74722647 5067.0 + 0 ENSG00000049860.13 protein_coding HEXB 2 OTTHUMG00000102057.12 +49546 chr5 ENSEMBL gene 74725099 74725204 106.0 - 0 ENSG00000207336.1 snRNA RNU6-658P 3 +49547 chr5 HAVANA gene 74721204 74767371 4197.0 - 0 ENSG00000164347.17 protein_coding GFM2 1 OTTHUMG00000102058.5 ncRNA_host +49548 chr5 ENSEMBL gene 74779309 74779413 105.0 + 0 ENSG00000199645.1 snRNA RNU6-1330P 3 +49549 chr5 HAVANA gene 74766991 74780113 4962.0 + 0 ENSG00000164346.9 protein_coding NSA2 2 OTTHUMG00000131273.6 ncRNA_host +49550 chr5 HAVANA gene 74798994 74800100 1107.0 + 0 ENSG00000250071.1 processed_pseudogene AC093214.1 1 OTTHUMG00000162509.1 pseudo_consens +49551 chr5 HAVANA gene 74777574 74866951 6860.0 - 0 ENSG00000198780.11 protein_coding FAM169A 1 OTTHUMG00000162930.5 +49552 chr5 HAVANA gene 74865893 74867854 1962.0 + 0 ENSG00000271714.1 antisense AC010501.1 2 OTTHUMG00000185527.1 +49553 chr5 ENSEMBL gene 74882656 74882783 128.0 - 0 ENSG00000212363.1 snoRNA RF00561 3 +49554 chr5 HAVANA gene 74929880 74930566 687.0 + 0 ENSG00000196390.6 processed_pseudogene AC116337.1 2 OTTHUMG00000162889.1 +49555 chr5 HAVANA gene 74931662 74931817 156.0 + 0 ENSG00000239517.1 processed_pseudogene AC116337.2 1 OTTHUMG00000157747.1 pseudo_consens +49556 chr5 HAVANA gene 74990189 74990637 449.0 - 0 ENSG00000182383.8 processed_pseudogene RPL27AP5 1 OTTHUMG00000157749.1 pseudo_consens,overlapping_locus +49557 chr5 HAVANA gene 75006713 75007012 300.0 - 0 ENSG00000249157.1 processed_pseudogene AC093259.1 2 OTTHUMG00000162650.1 overlapping_locus +49558 chr5 HAVANA gene 74917726 75023928 846.0 - 0 ENSG00000249856.1 lincRNA AC116337.3 2 OTTHUMG00000162890.2 overlapping_locus +49559 chr5 HAVANA gene 75025346 75030899 5554.0 - 0 ENSG00000176928.5 protein_coding GCNT4 2 OTTHUMG00000131272.1 +49560 chr5 HAVANA gene 75047719 75052843 793.0 - 0 ENSG00000250889.2 lincRNA LINC01336 2 OTTHUMG00000162467.2 +49561 chr5 HAVANA gene 75225424 75225668 245.0 + 0 ENSG00000251663.1 processed_pseudogene SUMO2P5 1 OTTHUMG00000162466.2 pseudo_consens +49562 chr5 HAVANA gene 75068275 75236878 6273.0 - 0 ENSG00000145700.9 protein_coding ANKRD31 2 OTTHUMG00000162649.3 +49563 chr5 HAVANA gene 75320155 75336914 527.0 - 0 ENSG00000247372.2 antisense AC008897.2 1 OTTHUMG00000162465.1 +49564 chr5 HAVANA gene 75336329 75362104 6215.0 + 0 ENSG00000113161.15 protein_coding HMGCR 1 OTTHUMG00000102069.5 +49565 chr5 HAVANA gene 75363760 75364242 483.0 + 0 ENSG00000271815.1 lincRNA AC008897.3 2 OTTHUMG00000185529.1 +49566 chr5 HAVANA gene 75374463 75374809 347.0 + 0 ENSG00000242198.1 processed_pseudogene AC008897.1 2 OTTHUMG00000157751.1 +49567 chr5 HAVANA gene 75356345 75512138 18138.0 - 0 ENSG00000113163.16 protein_coding COL4A3BP 2 OTTHUMG00000102068.9 +49568 chr5 ENSEMBL gene 75538598 75538658 61.0 - 0 ENSG00000251724.1 snRNA RNU7-175P 3 +49569 chr5 HAVANA gene 75598482 75599380 754.0 - 0 ENSG00000248881.1 antisense AC010245.1 2 OTTHUMG00000162488.1 +49570 chr5 HAVANA gene 75511756 75601144 9105.0 + 0 ENSG00000122008.15 protein_coding POLK 2 OTTHUMG00000102107.6 +49571 chr5 HAVANA gene 75608817 75609983 1167.0 + 0 ENSG00000272040.1 lincRNA AC010245.2 2 OTTHUMG00000185530.1 +49572 chr5 HAVANA gene 75611459 75671846 3287.0 + 0 ENSG00000189045.13 protein_coding ANKDD1B 1 OTTHUMG00000162490.5 +49573 chr5 ENSEMBL gene 75709495 75709599 105.0 - 0 ENSG00000207333.1 snRNA RNU6-680P 3 +49574 chr5 HAVANA gene 75674124 75717481 3448.0 - 0 ENSG00000152359.14 protein_coding POC5 1 OTTHUMG00000162487.6 ncRNA_host +49575 chr5 HAVANA gene 75752570 75753479 910.0 - 0 ENSG00000251078.1 processed_pseudogene SLC25A5P9 1 OTTHUMG00000162489.1 pseudo_consens +49576 chr5 HAVANA gene 75831255 75832764 1510.0 - 0 ENSG00000251419.1 processed_pseudogene AC108120.3 1 OTTHUMG00000162659.1 pseudo_consens +49577 chr5 HAVANA gene 75910283 75910576 294.0 - 0 ENSG00000249301.1 processed_pseudogene AC108120.2 2 OTTHUMG00000162661.1 +49578 chr5 HAVANA gene 75910565 75911867 1303.0 + 0 ENSG00000248684.1 processed_pseudogene BIN2P2 1 OTTHUMG00000162507.1 pseudo_consens +49579 chr5 HAVANA gene 75920670 75921660 991.0 - 0 ENSG00000228367.3 processed_pseudogene AC108120.1 1 OTTHUMG00000162508.1 pseudo_consens +49580 chr5 HAVANA gene 76075531 76075920 390.0 + 0 ENSG00000249777.1 processed_pseudogene SAP18P1 1 OTTHUMG00000162385.1 pseudo_consens +49581 chr5 HAVANA gene 76078666 76079763 1098.0 + 0 ENSG00000251342.1 processed_pseudogene AC026774.2 1 OTTHUMG00000162386.1 pseudo_consens +49582 chr5 HAVANA gene 76081946 76084186 691.0 - 0 ENSG00000248127.1 lincRNA AC026774.1 2 OTTHUMG00000162399.1 +49583 chr5 ENSEMBL gene 76091708 76091801 94.0 - 0 ENSG00000252833.1 rRNA_pseudogene RNA5SP186 3 +49584 chr5 HAVANA gene 76170930 76171106 177.0 + 0 ENSG00000251668.2 unprocessed_pseudogene AC113404.2 2 OTTHUMG00000162397.2 overlapping_locus +49585 chr5 HAVANA gene 76173629 76174183 555.0 - 0 ENSG00000254893.6 translated_processed_pseudogene AC113404.3 2 OTTHUMG00000162396.2 retrogene +49586 chr5 HAVANA gene 76242024 76242404 381.0 - 0 ENSG00000249014.2 processed_pseudogene HMGN2P4 2 OTTHUMG00000162400.2 +49587 chr5 HAVANA gene 76280956 76281267 312.0 + 0 ENSG00000251107.1 processed_pseudogene PDCD5P2 1 OTTHUMG00000162398.1 pseudo_consens,overlapping_locus +49588 chr5 HAVANA gene 76285542 76311462 756.0 - 0 ENSG00000250348.1 antisense AC113404.1 1 OTTHUMG00000162401.1 +49589 chr5 HAVANA gene 76083172 76353939 12028.0 + 0 ENSG00000122012.13 protein_coding SV2C 2 OTTHUMG00000162384.5 overlapping_locus +49590 chr5 HAVANA gene 76376675 76377149 475.0 + 0 ENSG00000251235.3 processed_pseudogene SNRPCP2 1 OTTHUMG00000162431.1 pseudo_consens +49591 chr5 HAVANA gene 76510440 76510766 327.0 + 0 ENSG00000250574.1 processed_pseudogene AC112173.1 1 OTTHUMG00000162433.1 pseudo_consens,overlapping_locus +49592 chr5 HAVANA gene 76606608 76608970 1588.0 - 0 ENSG00000249713.1 antisense AC026725.1 2 OTTHUMG00000162430.1 +49593 chr5 HAVANA gene 76615482 76623434 3429.0 - 0 ENSG00000164220.6 protein_coding F2RL2 1 OTTHUMG00000102119.3 +49594 chr5 HAVANA gene 76403249 76708132 7904.0 + 0 ENSG00000145703.15 protein_coding IQGAP2 1 OTTHUMG00000162432.2 overlapping_locus +49595 chr5 ENSEMBL gene 76712195 76712327 133.0 + 0 ENSG00000277188.1 misc_RNA RF02154 3 +49596 chr5 ENSEMBL gene 76712763 76712861 99.0 + 0 ENSG00000278237.1 misc_RNA RF02155 3 +49597 chr5 HAVANA gene 76691439 76716215 600.0 - 0 ENSG00000225407.3 antisense AC025188.1 2 OTTHUMG00000162429.1 +49598 chr5 HAVANA gene 76716043 76735781 4066.0 + 0 ENSG00000181104.6 protein_coding F2R 2 OTTHUMG00000131299.2 +49599 chr5 HAVANA gene 76818933 76835315 2958.0 + 0 ENSG00000164251.4 protein_coding F2RL1 2 OTTHUMG00000102118.4 +49600 chr5 ENSEMBL gene 76836900 76837195 296.0 - 0 ENSG00000264391.2 misc_RNA RN7SL208P 3 +49601 chr5 HAVANA gene 76850001 76921650 1954.0 + 0 ENSG00000171643.13 protein_coding S100Z 2 OTTHUMG00000162441.1 +49602 chr5 ENSEMBL gene 76948791 76948870 80.0 + 0 ENSG00000252684.1 snRNA RNU6ATAC36P 3 +49603 chr5 HAVANA gene 76952713 76981158 2803.0 + 0 ENSG00000145708.10 protein_coding CRHBP 2 OTTHUMG00000102133.2 +49604 chr5 HAVANA gene 77029251 77065234 5051.0 + 0 ENSG00000164252.12 protein_coding AGGF1 2 OTTHUMG00000102132.2 overlapping_locus +49605 chr5 HAVANA gene 77073881 77074520 385.0 + 0 ENSG00000250615.1 antisense AC008581.1 2 OTTHUMG00000162471.2 +49606 chr5 ENSEMBL gene 77080434 77080571 138.0 - 0 ENSG00000238961.1 snoRNA SNORA47 3 +49607 chr5 HAVANA gene 77072072 77087323 6514.0 - 0 ENSG00000132846.5 protein_coding ZBED3 2 OTTHUMG00000102131.5 ncRNA_host +49608 chr5 HAVANA gene 77146568 77147165 598.0 + 0 ENSG00000251566.1 transcribed_processed_pseudogene HMGB1P35 1 OTTHUMG00000162472.1 pseudo_consens,overlapping_locus +49609 chr5 HAVANA gene 77030902 77152155 2348.0 + 0 ENSG00000285000.1 protein_coding AC008581.2 2 OTTHUMG00000192507.1 overlapping_locus +49610 chr5 HAVANA gene 77086688 77166909 17200.0 + 0 ENSG00000250802.7 antisense ZBED3-AS1 1 OTTHUMG00000162473.6 overlapping_locus +49611 chr5 HAVANA gene 77290268 77291800 1533.0 + 0 ENSG00000251400.1 processed_pseudogene ALDH7A1P1 1 OTTHUMG00000162511.1 pseudo_consens,overlapping_locus +49612 chr5 HAVANA gene 77086732 77427124 3397.0 + 0 ENSG00000284762.1 protein_coding AC022414.1 2 OTTHUMG00000192508.1 overlapping_locus +49613 chr5 HAVANA gene 77210449 77429807 6944.0 + 0 ENSG00000113231.13 protein_coding PDE8B 2 OTTHUMG00000102170.11 overlapping_locus +49614 chr5 HAVANA gene 77545397 77546266 870.0 + 0 ENSG00000244019.1 processed_pseudogene RPS2P24 1 OTTHUMG00000157756.2 pseudo_consens +49615 chr5 HAVANA gene 77582376 77583122 747.0 + 0 ENSG00000244363.3 processed_pseudogene RPL7P23 2 OTTHUMG00000157760.1 +49616 chr5 HAVANA gene 77425970 77620611 7230.0 - 0 ENSG00000164253.13 protein_coding WDR41 1 OTTHUMG00000102169.13 +49617 chr5 HAVANA gene 77628712 77639688 4451.0 - 0 ENSG00000171540.7 protein_coding OTP 2 OTTHUMG00000102171.5 +49618 chr5 HAVANA gene 77784881 77786003 1123.0 + 0 ENSG00000213763.4 processed_pseudogene ACTBP2 1 OTTHUMG00000162641.1 pseudo_consens +49619 chr5 HAVANA gene 77691166 77868780 3058.0 - 0 ENSG00000171530.13 protein_coding TBCA 2 OTTHUMG00000102173.8 +49620 chr5 HAVANA gene 77942757 77946438 722.0 - 0 ENSG00000253572.2 lincRNA AC108482.1 2 OTTHUMG00000163634.2 +49621 chr5 HAVANA gene 78041879 78044138 2260.0 - 0 ENSG00000253558.1 transcribed_processed_pseudogene AC024568.1 1 OTTHUMG00000162654.1 pseudo_consens,overlapping_locus +49622 chr5 HAVANA gene 78222184 78222517 334.0 + 0 ENSG00000249372.1 processed_pseudogene ATP6V1G1P6 1 OTTHUMG00000162480.1 pseudo_consens +49623 chr5 HAVANA gene 78000525 78294755 7310.0 - 0 ENSG00000132842.13 protein_coding AP3B1 1 OTTHUMG00000106919.2 overlapping_locus +49624 chr5 HAVANA gene 78307503 78307914 412.0 + 0 ENSG00000251605.1 processed_pseudogene AC104108.1 1 OTTHUMG00000162482.1 pseudo_consens +49625 chr5 ENSEMBL gene 78314916 78315025 110.0 - 0 ENSG00000200331.1 snRNA RNU6-183P 3 +49626 chr5 ENSEMBL gene 78317036 78317137 102.0 + 0 ENSG00000206714.1 misc_RNA RF00019 3 +49627 chr5 HAVANA gene 78342365 78360507 1792.0 - 0 ENSG00000245556.2 lincRNA SCAMP1-AS1 1 OTTHUMG00000162481.1 +49628 chr5 HAVANA gene 78360583 78479071 5106.0 + 0 ENSG00000085365.17 protein_coding SCAMP1 1 OTTHUMG00000162479.6 +49629 chr5 HAVANA gene 78644265 78644845 581.0 - 0 ENSG00000248909.1 processed_pseudogene HMGB1P21 1 OTTHUMG00000162478.1 pseudo_consens,overlapping_locus +49630 chr5 HAVANA gene 78708734 78716082 791.0 - 0 ENSG00000254170.1 processed_pseudogene AC008802.1 1 OTTHUMG00000162797.1 pseudo_consens,overlapping_locus +49631 chr5 HAVANA gene 78753596 78753873 278.0 + 0 ENSG00000254310.1 processed_pseudogene AC025755.1 1 OTTHUMG00000162828.1 pseudo_consens +49632 chr5 HAVANA gene 78485215 78770021 7977.0 - 0 ENSG00000145685.13 protein_coding LHFPL2 1 OTTHUMG00000107579.4 overlapping_locus +49633 chr5 HAVANA gene 78777209 78986087 7189.0 - 0 ENSG00000113273.16 protein_coding ARSB 1 OTTHUMG00000108129.5 +49634 chr5 HAVANA gene 79000112 79001124 1013.0 - 0 ENSG00000214890.3 processed_pseudogene AC020937.1 1 OTTHUMG00000162842.1 pseudo_consens,overlapping_locus +49635 chr5 HAVANA gene 79069717 79089466 3182.0 + 0 ENSG00000132840.9 protein_coding BHMT2 1 OTTHUMG00000108158.4 +49636 chr5 HAVANA gene 79111779 79132290 3519.0 + 0 ENSG00000145692.14 protein_coding BHMT 2 OTTHUMG00000108157.4 +49637 chr5 ENSEMBL gene 79170234 79170335 102.0 - 0 ENSG00000201955.1 misc_RNA RNY3P1 3 +49638 chr5 HAVANA gene 79191549 79191747 199.0 + 0 ENSG00000249829.2 processed_pseudogene AC016559.1 2 OTTHUMG00000162789.2 +49639 chr5 ENSEMBL gene 79220942 79221073 132.0 + 0 ENSG00000206592.1 snoRNA RF00425 3 +49640 chr5 HAVANA gene 79229904 79230588 359.0 + 0 ENSG00000250330.1 processed_pseudogene AC016559.2 1 OTTHUMG00000162790.1 pseudo_consens +49641 chr5 HAVANA gene 78997606 79236038 5254.0 - 0 ENSG00000132837.14 protein_coding DMGDH 1 OTTHUMG00000108159.4 ncRNA_host,overlapping_locus +49642 chr5 HAVANA gene 79284132 79284918 787.0 - 0 ENSG00000213757.3 processed_pseudogene AC020898.1 1 OTTHUMG00000157775.1 pseudo_consens +49643 chr5 HAVANA gene 79236189 79327215 9042.0 + 0 ENSG00000152409.8 protein_coding JMY 2 OTTHUMG00000131301.6 +49644 chr5 HAVANA gene 79510434 79510919 486.0 + 0 ENSG00000213755.3 processed_pseudogene AC093270.1 1 OTTHUMG00000157777.1 pseudo_consens +49645 chr5 HAVANA gene 79372636 79514217 6154.0 - 0 ENSG00000152413.14 protein_coding HOMER1 2 OTTHUMG00000134278.2 +49646 chr5 HAVANA gene 79529302 79530093 792.0 + 0 ENSG00000243160.1 processed_pseudogene AC093270.2 1 OTTHUMG00000157778.1 pseudo_consens +49647 chr5 ENSEMBL gene 79534853 79534954 102.0 + 0 ENSG00000207391.1 misc_RNA RF00019 3 +49648 chr5 ENSEMBL gene 79562745 79562846 102.0 - 0 ENSG00000277818.1 misc_RNA RF00019 3 +49649 chr5 HAVANA gene 79612120 79686648 5508.0 + 0 ENSG00000164329.13 protein_coding TENT2 2 OTTHUMG00000108163.4 +49650 chr5 HAVANA gene 79689877 79800240 14179.0 + 0 ENSG00000164309.14 protein_coding CMYA5 2 OTTHUMG00000162548.3 +49651 chr5 HAVANA gene 79774348 79816190 460.0 - 0 ENSG00000250258.1 antisense AC008496.2 2 OTTHUMG00000162658.1 +49652 chr5 HAVANA gene 79849552 79849846 295.0 - 0 ENSG00000238254.3 processed_pseudogene AC008496.1 2 OTTHUMG00000162656.1 +49653 chr5 HAVANA gene 79936579 79967626 561.0 + 0 ENSG00000250888.1 antisense LINC01455 2 OTTHUMG00000162549.1 +49654 chr5 HAVANA gene 79976731 79991265 7919.0 - 0 ENSG00000177034.15 protein_coding MTX3 2 OTTHUMG00000162547.7 +49655 chr5 HAVANA gene 80019609 80019920 312.0 + 0 ENSG00000251050.1 processed_pseudogene AC112184.1 1 OTTHUMG00000162562.1 pseudo_consens,overlapping_locus +49656 chr5 HAVANA gene 80033171 80033302 132.0 - 0 ENSG00000249778.1 processed_pseudogene TRMT112P2 1 OTTHUMG00000162546.1 pseudo_consens +49657 chr5 HAVANA gene 79991311 80083287 4605.0 + 0 ENSG00000113296.14 protein_coding THBS4 1 OTTHUMG00000108173.2 overlapping_locus +49658 chr5 HAVANA gene 80052374 80083654 3233.0 - 0 ENSG00000249825.5 antisense CTD-2201I18.1 2 OTTHUMG00000162569.1 +49659 chr5 HAVANA gene 80128361 80143883 664.0 + 0 ENSG00000251675.1 antisense AC010260.1 2 OTTHUMG00000162657.1 +49660 chr5 HAVANA gene 80111651 80256079 9570.0 - 0 ENSG00000164300.16 protein_coding SERINC5 1 OTTHUMG00000162563.10 +49661 chr5 HAVANA gene 80288449 80289781 1333.0 + 0 ENSG00000249438.2 processed_pseudogene KRT18P45 1 OTTHUMG00000162513.2 pseudo_consens +49662 chr5 HAVANA gene 80299678 80302847 1101.0 - 0 ENSG00000184188.6 processed_pseudogene AC026410.1 1 OTTHUMG00000162537.1 pseudo_consens +49663 chr5 ENSEMBL gene 80306235 80306368 134.0 - 0 ENSG00000251828.1 snoRNA RF00322 3 +49664 chr5 HAVANA gene 80315671 80315826 156.0 + 0 ENSG00000244076.1 processed_pseudogene AC026410.2 1 OTTHUMG00000157779.1 pseudo_consens +49665 chr5 HAVANA gene 80319625 80321842 1945.0 + 0 ENSG00000164299.6 protein_coding SPZ1 2 OTTHUMG00000162514.2 retrogene +49666 chr5 HAVANA gene 80331573 80332541 969.0 - 0 ENSG00000227087.4 processed_pseudogene RBMX2P5 1 OTTHUMG00000162532.1 pseudo_consens +49667 chr5 HAVANA gene 80351021 80351956 936.0 - 0 ENSG00000248569.1 processed_pseudogene CRSP8P 1 OTTHUMG00000162530.1 pseudo_consens +49668 chr5 HAVANA gene 80359080 80360040 961.0 - 0 ENSG00000220157.4 processed_pseudogene HNRNPA1P12 1 OTTHUMG00000162536.1 pseudo_consens +49669 chr5 ENSEMBL gene 80365726 80365832 107.0 - 0 ENSG00000206774.1 snRNA RNU6-211P 3 +49670 chr5 HAVANA gene 80408013 80479350 11461.0 + 0 ENSG00000039319.16 protein_coding ZFYVE16 2 OTTHUMG00000108178.5 +49671 chr5 HAVANA gene 80482293 80488063 1261.0 - 0 ENSG00000249042.5 antisense AC008771.1 2 OTTHUMG00000162534.1 +49672 chr5 HAVANA gene 80498534 80498971 438.0 - 0 ENSG00000242706.2 processed_pseudogene RPS27AP9 1 OTTHUMG00000157788.2 pseudo_consens +49673 chr5 HAVANA gene 80500332 80501400 752.0 + 0 ENSG00000240003.2 processed_pseudogene RPL7P24 1 OTTHUMG00000157787.2 pseudo_consens,overlapping_locus +49674 chr5 HAVANA gene 80487969 80542563 3109.0 + 0 ENSG00000152380.9 protein_coding FAM151B 2 OTTHUMG00000131303.3 overlapping_locus +49675 chr5 HAVANA gene 80556755 80570488 4024.0 - 0 ENSG00000189127.7 protein_coding ANKRD34B 2 OTTHUMG00000162541.3 +49676 chr5 HAVANA gene 80603383 80603644 262.0 - 0 ENSG00000251366.1 processed_pseudogene DBIP2 1 OTTHUMG00000162653.1 pseudo_consens +49677 chr5 HAVANA gene 80608623 80622524 440.0 - 0 ENSG00000251221.1 lincRNA LINC01337 1 OTTHUMG00000162533.1 +49678 chr5 HAVANA gene 80630313 80631590 549.0 - 0 ENSG00000249655.1 antisense AC008434.1 2 OTTHUMG00000162535.1 overlapping_locus +49679 chr5 HAVANA gene 80650000 80650086 87.0 - 0 ENSG00000271043.2 processed_pseudogene MTRNR2L2 2 OTTHUMG00000184945.2 overlapping_locus +49680 chr5 HAVANA gene 80626228 80654983 4409.0 - 0 ENSG00000228716.6 protein_coding DHFR 2 OTTHUMG00000162529.2 overlapping_locus +49681 chr5 HAVANA gene 80746339 80746819 481.0 - 0 ENSG00000248967.1 processed_pseudogene AC022493.2 1 OTTHUMG00000162531.1 pseudo_consens +49682 chr5 HAVANA gene 80855507 80855843 337.0 - 0 ENSG00000244630.2 processed_pseudogene AC022493.1 1 OTTHUMG00000157790.2 pseudo_consens +49683 chr5 HAVANA gene 80654648 80876460 4709.0 + 0 ENSG00000113318.9 protein_coding MSH3 2 OTTHUMG00000162540.1 +49684 chr5 HAVANA gene 80947697 80960907 1166.0 - 0 ENSG00000251450.1 antisense RASGRF2-AS1 2 OTTHUMG00000162539.1 +49685 chr5 HAVANA gene 80997183 80998047 536.0 - 0 ENSG00000251001.1 processed_pseudogene AC026427.2 1 OTTHUMG00000162538.1 pseudo_consens +49686 chr5 HAVANA gene 81113385 81114852 555.0 - 0 ENSG00000249772.1 antisense AC026427.1 2 OTTHUMG00000162565.1 +49687 chr5 HAVANA gene 80960672 81230156 10717.0 + 0 ENSG00000113319.12 protein_coding RASGRF2 2 OTTHUMG00000119015.5 +49688 chr5 HAVANA gene 81242330 81242599 270.0 - 0 ENSG00000248794.1 processed_pseudogene AC026436.1 1 OTTHUMG00000162652.1 pseudo_consens,overlapping_locus +49689 chr5 HAVANA gene 81233285 81266397 2736.0 + 0 ENSG00000131730.15 protein_coding CKMT2 2 OTTHUMG00000119013.4 +49690 chr5 HAVANA gene 81204084 81301560 3884.0 - 0 ENSG00000247572.7 antisense CKMT2-AS1 2 OTTHUMG00000162566.2 overlapping_locus +49691 chr5 HAVANA gene 81301590 81313297 5127.0 + 0 ENSG00000131732.11 protein_coding ZCCHC9 2 OTTHUMG00000119014.3 +49692 chr5 HAVANA gene 81330005 81394179 2444.0 - 0 ENSG00000172497.8 protein_coding ACOT12 2 OTTHUMG00000131305.3 +49693 chr5 HAVANA gene 81413021 81751797 11284.0 - 0 ENSG00000145687.16 protein_coding SSBP2 2 OTTHUMG00000119039.3 +49694 chr5 HAVANA gene 81851601 81852201 601.0 + 0 ENSG00000249483.1 lincRNA AC026726.1 2 OTTHUMG00000162555.1 +49695 chr5 HAVANA gene 81892490 81892721 209.0 + 0 ENSG00000214857.4 processed_pseudogene SEM1P1 1 OTTHUMG00000162556.1 pseudo_consens +49696 chr5 HAVANA gene 81991995 81992481 487.0 + 0 ENSG00000236447.2 sense_intronic ATG10-IT1 2 OTTHUMG00000162771.1 overlapping_locus +49697 chr5 HAVANA gene 82009602 82010094 493.0 - 0 ENSG00000251495.1 processed_pseudogene PPIAP11 2 OTTHUMG00000162554.1 +49698 chr5 HAVANA gene 82073055 82073702 648.0 - 0 ENSG00000248192.1 antisense ATG10-AS1 2 OTTHUMG00000162770.1 +49699 chr5 ENSEMBL gene 82078427 82078724 298.0 + 0 ENSG00000265684.2 misc_RNA RN7SL378P 3 +49700 chr5 HAVANA gene 82265157 82265259 103.0 - 0 ENSG00000251374.1 processed_pseudogene AC010598.1 2 OTTHUMG00000162769.1 +49701 chr5 HAVANA gene 81972025 82276857 5449.0 + 0 ENSG00000152348.15 protein_coding ATG10 1 OTTHUMG00000119041.6 ncRNA_host,overlapping_locus +49702 chr5 HAVANA gene 82273358 82278577 4204.0 - 0 ENSG00000186468.12 protein_coding RPS23 1 OTTHUMG00000162557.3 +49703 chr5 HAVANA gene 82279462 82386977 7185.0 + 0 ENSG00000205464.12 protein_coding ATP6AP1L 2 OTTHUMG00000162558.4 +49704 chr5 HAVANA gene 82545862 82546310 449.0 - 0 ENSG00000248393.1 lincRNA AC026782.1 2 OTTHUMG00000162772.1 +49705 chr5 HAVANA gene 82586776 82587411 636.0 - 0 ENSG00000248870.1 lincRNA AC026782.2 2 OTTHUMG00000162768.1 +49706 chr5 HAVANA gene 82765404 82766333 930.0 + 0 ENSG00000249100.1 lincRNA AC008885.2 2 OTTHUMG00000162559.1 +49707 chr5 HAVANA gene 82777797 82778586 790.0 + 0 ENSG00000240411.2 processed_pseudogene RPL5P16 1 OTTHUMG00000157791.2 pseudo_consens +49708 chr5 HAVANA gene 82824884 82825184 301.0 + 0 ENSG00000248105.1 processed_pseudogene AC008885.1 1 OTTHUMG00000162561.1 pseudo_consens +49709 chr5 ENSEMBL gene 82840155 82840224 70.0 + 0 ENSG00000283359.1 miRNA MIR3977 3 +49710 chr5 HAVANA gene 82850864 82859836 632.0 - 0 ENSG00000281327.1 lincRNA LINC01338 2 OTTHUMG00000189588.1 +49711 chr5 HAVANA gene 82919376 82921119 745.0 - 0 ENSG00000248112.1 lincRNA AC108174.1 1 OTTHUMG00000162767.1 +49712 chr5 HAVANA gene 82940458 82940983 526.0 - 0 ENSG00000249857.1 lincRNA AC027338.2 2 OTTHUMG00000162780.1 +49713 chr5 HAVANA gene 82968888 82977153 1094.0 + 0 ENSG00000248400.2 processed_pseudogene ST13P12 1 OTTHUMG00000162560.2 pseudo_consens +49714 chr5 HAVANA gene 83012285 83013109 825.0 - 0 ENSG00000249664.1 lincRNA AC027338.1 2 OTTHUMG00000162781.1 +49715 chr5 HAVANA gene 83049376 83050964 1589.0 - 0 ENSG00000271862.1 lincRNA AC104118.1 2 OTTHUMG00000185533.1 +49716 chr5 ENSEMBL gene 83064204 83064337 134.0 - 0 ENSG00000238835.1 snoRNA SCARNA18 3 +49717 chr5 HAVANA gene 83052846 83077863 4908.0 - 0 ENSG00000174695.9 protein_coding TMEM167A 2 OTTHUMG00000162570.2 ncRNA_host +49718 chr5 HAVANA gene 83201229 83202141 584.0 + 0 ENSG00000243385.2 processed_pseudogene AC094085.1 1 OTTHUMG00000157792.2 pseudo_consens,overlapping_locus +49719 chr5 HAVANA gene 83279921 83280644 724.0 - 0 ENSG00000251552.1 processed_pseudogene COQ10BP2 1 OTTHUMG00000162567.1 pseudo_consens +49720 chr5 HAVANA gene 83077498 83353787 2676.0 + 0 ENSG00000152422.15 protein_coding XRCC4 2 OTTHUMG00000131319.3 overlapping_locus +49721 chr5 HAVANA gene 83426676 83427030 355.0 + 0 ENSG00000251395.1 processed_pseudogene FTH1P9 1 OTTHUMG00000162568.1 pseudo_consens +49722 chr5 HAVANA gene 83531352 83581320 877.0 - 0 ENSG00000249835.2 antisense VCAN-AS1 1 OTTHUMG00000162571.1 +49723 chr5 HAVANA gene 83471465 83582303 14831.0 + 0 ENSG00000038427.15 protein_coding VCAN 2 OTTHUMG00000131321.6 +49724 chr5 ENSEMBL gene 83685866 83686018 153.0 + 0 ENSG00000253073.1 misc_RNA RN7SKP295 3 +49725 chr5 ENSEMBL gene 83703448 83703543 96.0 + 0 ENSG00000206744.1 snRNA RNU6-620P 3 +49726 chr5 HAVANA gene 83637805 83721613 6956.0 - 0 ENSG00000145681.10 protein_coding HAPLN1 2 OTTHUMG00000119045.5 +49727 chr5 HAVANA gene 83746388 83746989 602.0 - 0 ENSG00000242858.1 processed_pseudogene AC020899.1 1 OTTHUMG00000157793.1 pseudo_consens +49728 chr5 ENSEMBL gene 83803554 83803685 132.0 + 0 ENSG00000202157.1 snRNA RNU4-11P 3 +49729 chr5 HAVANA gene 83875166 83875821 656.0 - 0 ENSG00000250013.1 processed_pseudogene AC093286.1 1 OTTHUMG00000162623.1 pseudo_consens +49730 chr5 ENSEMBL gene 84196883 84196989 107.0 + 0 ENSG00000252861.1 snRNA RNU6-448P 3 +49731 chr5 HAVANA gene 83940554 84384793 5738.0 - 0 ENSG00000164176.12 protein_coding EDIL3 2 OTTHUMG00000119047.2 +49732 chr5 HAVANA gene 84384427 84490765 1370.0 + 0 ENSG00000250320.5 antisense AC113383.1 2 OTTHUMG00000162622.2 +49733 chr5 HAVANA gene 84999812 85000315 504.0 - 0 ENSG00000214853.5 processed_pseudogene PPIAP79 1 OTTHUMG00000162588.3 pseudo_consens +49734 chr5 HAVANA gene 85112342 85112756 415.0 - 0 ENSG00000249349.1 lincRNA AC114928.1 2 OTTHUMG00000162573.1 +49735 chr5 HAVANA gene 85190629 85190830 202.0 - 0 ENSG00000248674.1 processed_pseudogene RBBP4P6 1 OTTHUMG00000162572.2 pseudo_consens +49736 chr5 HAVANA gene 85210060 85210903 584.0 - 0 ENSG00000250253.3 processed_pseudogene AC117522.3 1 OTTHUMG00000162574.2 pseudo_consens +49737 chr5 HAVANA gene 85212958 85213614 657.0 - 0 ENSG00000249792.1 lincRNA AC117522.2 2 OTTHUMG00000162786.1 +49738 chr5 HAVANA gene 85237681 85238074 380.0 - 0 ENSG00000248170.1 processed_pseudogene AC117522.1 2 OTTHUMG00000162787.1 +49739 chr5 HAVANA gene 85420028 85420451 424.0 - 0 ENSG00000248667.1 lincRNA AC010486.1 2 OTTHUMG00000162576.1 +49740 chr5 HAVANA gene 85429702 85430184 483.0 + 0 ENSG00000249023.1 lincRNA AC010486.2 2 OTTHUMG00000162575.1 +49741 chr5 HAVANA gene 85446974 85447758 785.0 + 0 ENSG00000249842.1 lincRNA AC010486.3 2 OTTHUMG00000162579.1 +49742 chr5 HAVANA gene 85464434 85465310 877.0 + 0 ENSG00000243859.3 processed_pseudogene RPL5P17 1 OTTHUMG00000157794.3 pseudo_consens +49743 chr5 HAVANA gene 85549409 85549952 544.0 + 0 ENSG00000251066.1 processed_pseudogene AC026700.1 1 OTTHUMG00000162577.1 pseudo_consens +49744 chr5 HAVANA gene 85663232 85664684 1453.0 + 0 ENSG00000250874.1 lincRNA AC010595.1 2 OTTHUMG00000162578.1 +49745 chr5 HAVANA gene 85762559 85763138 580.0 + 0 ENSG00000241965.2 processed_pseudogene RPS2P25 1 OTTHUMG00000157796.3 pseudo_consens +49746 chr5 HAVANA gene 85848502 85849199 698.0 + 0 ENSG00000249153.1 lincRNA AC026414.1 2 OTTHUMG00000162794.1 +49747 chr5 HAVANA gene 86087526 86087847 322.0 + 0 ENSG00000250359.1 processed_pseudogene PTP4A1P4 1 OTTHUMG00000162586.2 pseudo_consens +49748 chr5 HAVANA gene 86282460 86296463 1603.0 + 0 ENSG00000205449.11 transcribed_unprocessed_pseudogene NBPF22P 2 OTTHUMG00000162585.3 +49749 chr5 HAVANA gene 86305233 86306149 917.0 - 0 ENSG00000280009.1 TEC AC020923.1 2 OTTHUMG00000162792.1 +49750 chr5 HAVANA gene 86335024 86335808 785.0 + 0 ENSG00000248195.1 lincRNA AC016550.1 2 OTTHUMG00000162791.1 +49751 chr5 HAVANA gene 86353803 86368854 581.0 + 0 ENSG00000248363.5 lincRNA AC016550.2 2 OTTHUMG00000162587.1 +49752 chr5 HAVANA gene 86380660 86381426 767.0 - 0 ENSG00000250124.1 lincRNA AC016550.3 2 OTTHUMG00000162584.1 +49753 chr5 HAVANA gene 86402465 86402960 496.0 + 0 ENSG00000251585.1 processed_pseudogene AC026444.1 1 OTTHUMG00000162580.2 pseudo_consens +49754 chr5 ENSEMBL gene 86620497 86620575 79.0 + 0 ENSG00000284078.1 miRNA AC108110.1 3 +49755 chr5 HAVANA gene 86617904 86620962 1993.0 + 0 ENSG00000127184.12 protein_coding COX7C 2 OTTHUMG00000119049.4 ncRNA_host +49756 chr5 ENSEMBL gene 86663144 86663250 107.0 - 0 ENSG00000207013.1 snRNA RNU6-804P 3 +49757 chr5 HAVANA gene 86746818 86749772 2094.0 + 0 ENSG00000250544.1 lincRNA LINC02059 2 OTTHUMG00000162607.1 +49758 chr5 HAVANA gene 86797685 86800280 482.0 + 0 ENSG00000248701.1 lincRNA AC008539.1 2 OTTHUMG00000162606.1 +49759 chr5 HAVANA gene 86884231 86884881 651.0 - 0 ENSG00000242477.1 processed_pseudogene AC091429.1 1 OTTHUMG00000157797.1 pseudo_consens +49760 chr5 ENSEMBL gene 87102603 87102846 244.0 - 0 ENSG00000251951.1 misc_RNA RN7SKP34 3 +49761 chr5 ENSEMBL gene 87114879 87114954 76.0 - 0 ENSG00000265919.1 miRNA MIR4280 3 +49762 chr5 HAVANA gene 86967321 87137712 649.0 + 0 ENSG00000249061.1 lincRNA AC109492.1 2 OTTHUMG00000162750.1 +49763 chr5 HAVANA gene 87205408 87240145 3363.0 - 0 ENSG00000233828.3 lincRNA LINC01949 2 OTTHUMG00000187233.1 +49764 chr5 ENSEMBL gene 87294189 87294473 285.0 - 0 ENSG00000241243.3 misc_RNA RN7SL629P 3 +49765 chr5 ENSEMBL gene 87299687 87299797 111.0 - 0 ENSG00000207452.1 snRNA RNU6-606P 3 +49766 chr5 HAVANA gene 87267888 87391931 5232.0 + 0 ENSG00000145715.14 protein_coding RASA1 2 OTTHUMG00000162605.2 +49767 chr5 HAVANA gene 87318416 87413019 6070.0 - 0 ENSG00000134480.14 protein_coding CCNH 1 OTTHUMG00000119077.5 +49768 chr5 ENSEMBL gene 87420341 87420447 107.0 - 0 ENSG00000200462.1 snRNA RNU6-727P 3 +49769 chr5 HAVANA gene 87412342 87499340 2113.0 + 0 ENSG00000285190.1 antisense AC018754.1 2 OTTHUMG00000192559.1 +49770 chr5 HAVANA gene 87662042 87679147 652.0 + 0 ENSG00000249362.1 lincRNA LINC02488 1 OTTHUMG00000162592.1 +49771 chr5 HAVANA gene 87713135 87733269 592.0 - 0 ENSG00000248708.1 lincRNA LINC02144 1 OTTHUMG00000162593.1 +49772 chr5 HAVANA gene 88189633 88269476 9598.0 - 0 ENSG00000164180.13 protein_coding TMEM161B 1 OTTHUMG00000131323.5 +49773 chr5 ENSEMBL gene 88274258 88274376 119.0 - 0 ENSG00000207129.1 rRNA_pseudogene RNA5SP187 3 +49774 chr5 HAVANA gene 88381957 88382725 769.0 + 0 ENSG00000240083.2 processed_pseudogene RPS3AP22 1 OTTHUMG00000157798.3 pseudo_consens,overlapping_locus +49775 chr5 ENSEMBL gene 88382772 88382907 136.0 + 0 ENSG00000206958.1 snoRNA RF00156 3 +49776 chr5 HAVANA gene 88382948 88383260 313.0 + 0 ENSG00000250306.1 processed_pseudogene AC091826.1 2 OTTHUMG00000162784.1 overlapping_locus +49777 chr5 HAVANA gene 88268895 88436685 4439.0 + 0 ENSG00000247828.7 antisense TMEM161B-AS1 2 OTTHUMG00000162704.4 ncRNA_host,overlapping_locus +49778 chr5 HAVANA gene 88408982 88439090 1721.0 - 0 ENSG00000250156.3 lincRNA LINC02060 2 OTTHUMG00000185341.2 overlapping_locus +49779 chr5 HAVANA gene 88433892 88498697 412.0 - 0 ENSG00000271904.1 lincRNA AC091826.2 2 OTTHUMG00000162703.2 overlapping_locus +49780 chr5 HAVANA gene 88602780 88603117 338.0 + 0 ENSG00000250705.1 processed_pseudogene AC008526.1 1 OTTHUMG00000162633.1 pseudo_consens +49781 chr5 ENSEMBL gene 88666853 88666939 87.0 - 0 ENSG00000284447.1 miRNA MIR9-2 3 +49782 chr5 HAVANA gene 88507546 88691041 6174.0 - 0 ENSG00000245526.10 lincRNA LINC00461 2 OTTHUMG00000162632.4 ncRNA_host +49783 chr5 HAVANA gene 88692651 88692859 82.0 + 0 ENSG00000250555.2 antisense AC008525.2 2 OTTHUMG00000162635.2 overlapping_locus +49784 chr5 HAVANA gene 88692645 88693972 676.0 - 0 ENSG00000250377.1 lincRNA AC008525.1 2 OTTHUMG00000162631.1 +49785 chr5 HAVANA gene 88676218 88722831 463.0 + 0 ENSG00000245864.2 antisense MEF2C-AS2 2 OTTHUMG00000162629.1 overlapping_locus +49786 chr5 HAVANA gene 88717117 88904257 11755.0 - 0 ENSG00000081189.15 protein_coding MEF2C 2 OTTHUMG00000162634.12 +49787 chr5 HAVANA gene 88883328 89466398 7865.0 + 0 ENSG00000248309.7 antisense MEF2C-AS1 2 OTTHUMG00000162630.5 +49788 chr5 HAVANA gene 89466537 89470039 253.0 - 0 ENSG00000250831.1 lincRNA AC074131.1 2 OTTHUMG00000162670.1 +49789 chr5 HAVANA gene 89581209 89677701 420.0 + 0 ENSG00000250437.1 lincRNA LINC02161 2 OTTHUMG00000162669.1 +49790 chr5 HAVANA gene 89900664 89904908 584.0 + 0 ENSG00000214942.4 lincRNA AC008448.1 2 OTTHUMG00000162603.1 +49791 chr5 HAVANA gene 89944910 89947573 570.0 + 0 ENSG00000249265.1 lincRNA AC113167.1 1 OTTHUMG00000162602.2 +49792 chr5 ENSEMBL gene 90016621 90016720 100.0 - 0 ENSG00000264342.3 miRNA MIR3660 3 +49793 chr5 HAVANA gene 90158339 90290071 1044.0 - 0 ENSG00000248555.6 processed_transcript LINC01339 2 OTTHUMG00000162621.4 +49794 chr5 HAVANA gene 90353037 90356609 572.0 - 0 ENSG00000253321.1 lincRNA AC099554.1 1 OTTHUMG00000164265.1 +49795 chr5 HAVANA gene 90388468 90389363 896.0 - 0 ENSG00000260871.1 sense_overlapping AC093510.2 2 OTTHUMG00000174459.1 +49796 chr5 HAVANA gene 90392261 90409786 3106.0 - 0 ENSG00000153140.8 protein_coding CETN3 1 OTTHUMG00000131326.3 +49797 chr5 HAVANA gene 90410000 90410669 670.0 + 0 ENSG00000255647.3 processed_transcript AC093510.1 2 OTTHUMG00000186592.2 +49798 chr5 HAVANA gene 90458203 90474768 5676.0 - 0 ENSG00000176055.9 protein_coding MBLAC2 2 OTTHUMG00000131327.2 +49799 chr5 HAVANA gene 90471748 90514553 4019.0 + 0 ENSG00000113356.11 protein_coding POLR3G 1 OTTHUMG00000162809.4 +49800 chr5 HAVANA gene 90515611 90529584 4459.0 - 0 ENSG00000176018.12 protein_coding LYSMD3 1 OTTHUMG00000162667.2 +49801 chr5 HAVANA gene 91030990 91031307 318.0 - 0 ENSG00000249514.1 processed_pseudogene TMEM251P1 1 OTTHUMG00000162666.1 pseudo_consens +49802 chr5 HAVANA gene 91132303 91142470 687.0 - 0 ENSG00000285618.1 antisense AC074132.1 2 OTTHUMG00000192630.1 +49803 chr5 HAVANA gene 90529344 91164437 33822.0 + 0 ENSG00000164199.17 protein_coding ADGRV1 1 OTTHUMG00000162668.11 +49804 chr5 HAVANA gene 91223419 91223967 549.0 + 0 ENSG00000212930.3 lincRNA AC093281.1 2 OTTHUMG00000162807.1 +49805 chr5 HAVANA gene 91226475 91227071 597.0 - 0 ENSG00000251093.1 lincRNA AC093281.2 2 OTTHUMG00000162808.1 +49806 chr5 ENSEMBL gene 91270727 91270867 141.0 + 0 ENSG00000199643.1 snRNA RNU4-90P 3 +49807 chr5 HAVANA gene 91280097 91281142 1046.0 - 0 ENSG00000234292.3 lincRNA AC123595.1 2 OTTHUMG00000162618.1 +49808 chr5 HAVANA gene 91054834 91314547 16538.0 - 0 ENSG00000248323.6 antisense LUCAT1 2 OTTHUMG00000162611.6 +49809 chr5 ENSEMBL gene 91314716 91314997 282.0 - 0 ENSG00000277001.1 misc_RNA RF00017 3 +49810 chr5 HAVANA gene 91354478 91354934 457.0 + 0 ENSG00000240388.2 processed_pseudogene AC008799.1 1 OTTHUMG00000157801.2 pseudo_consens +49811 chr5 HAVANA gene 91355380 91356026 647.0 + 0 ENSG00000241059.2 antisense AC008799.2 2 OTTHUMG00000162816.1 +49812 chr5 HAVANA gene 91368724 91383359 4934.0 - 0 ENSG00000113369.8 protein_coding ARRDC3 1 OTTHUMG00000162616.2 +49813 chr5 HAVANA gene 91380349 91439085 2832.0 + 0 ENSG00000281357.2 lincRNA ARRDC3-AS1 2 OTTHUMG00000189546.1 +49814 chr5 HAVANA gene 91476382 91477018 637.0 + 0 ENSG00000251356.1 processed_pseudogene RAB5CP2 1 OTTHUMG00000162620.2 pseudo_consens +49815 chr5 ENSEMBL gene 91844022 91844116 95.0 - 0 ENSG00000276426.1 misc_RNA RF02271 3 +49816 chr5 HAVANA gene 91843687 91844529 843.0 - 0 ENSG00000248826.2 processed_pseudogene PCBP2P3 1 OTTHUMG00000162612.3 pseudo_consens +49817 chr5 HAVANA gene 92329230 92332584 278.0 + 0 ENSG00000248864.1 lincRNA AC114316.1 2 OTTHUMG00000162608.1 overlapping_locus +49818 chr5 HAVANA gene 92082597 92479426 3453.0 + 0 ENSG00000250049.5 lincRNA AC114316.2 2 OTTHUMG00000162609.2 overlapping_locus +49819 chr5 HAVANA gene 92410256 92660863 761.0 - 0 ENSG00000249776.5 lincRNA AC124854.1 2 OTTHUMG00000162673.1 +49820 chr5 HAVANA gene 92654848 92679141 1365.0 + 0 ENSG00000249169.1 lincRNA AC026780.1 2 OTTHUMG00000162625.2 +49821 chr5 HAVANA gene 92675956 92688254 730.0 - 0 ENSG00000249984.1 lincRNA AC026780.2 2 OTTHUMG00000162675.1 +49822 chr5 HAVANA gene 92840807 92841628 822.0 - 0 ENSG00000248950.1 processed_pseudogene LDHBP3 1 OTTHUMG00000160111.1 pseudo_consens +49823 chr5 HAVANA gene 92826255 92844004 585.0 + 0 ENSG00000248588.1 lincRNA AC008517.1 2 OTTHUMG00000162672.2 +49824 chr5 HAVANA gene 92889387 92890840 1454.0 - 0 ENSG00000249958.1 processed_pseudogene CCT7P2 1 OTTHUMG00000162628.1 pseudo_consens +49825 chr5 HAVANA gene 92907180 92939591 707.0 - 0 ENSG00000248528.1 lincRNA LINC02058 2 OTTHUMG00000162626.1 +49826 chr5 HAVANA gene 93019663 93068669 625.0 - 0 ENSG00000251361.1 lincRNA AC012625.1 2 OTTHUMG00000162674.1 +49827 chr5 HAVANA gene 93267429 93268425 997.0 + 0 ENSG00000213730.3 processed_pseudogene POLD2P1 1 OTTHUMG00000162647.2 pseudo_consens +49828 chr5 HAVANA gene 93409359 93585648 7720.0 - 0 ENSG00000237187.8 antisense NR2F1-AS1 2 OTTHUMG00000162643.3 +49829 chr5 HAVANA gene 93583224 93594615 4314.0 + 0 ENSG00000175745.12 protein_coding NR2F1 1 OTTHUMG00000119079.4 +49830 chr5 HAVANA gene 93600357 93603598 3242.0 + 0 ENSG00000278905.1 TEC AC106818.1 2 OTTHUMG00000162645.2 +49831 chr5 ENSEMBL gene 93620696 93620788 93.0 - 0 ENSG00000284336.1 miRNA MIR2277 3 +49832 chr5 HAVANA gene 93682838 93683667 830.0 - 0 ENSG00000249353.2 processed_pseudogene NPM1P27 1 OTTHUMG00000162646.3 pseudo_consens,overlapping_locus +49833 chr5 HAVANA gene 93733220 93741637 8418.0 - 0 ENSG00000248483.6 protein_coding POU5F2 2 OTTHUMG00000162644.7 overlapping_locus,retrogene +49834 chr5 HAVANA gene 93741640 93743500 548.0 + 0 ENSG00000272406.1 lincRNA AC108102.1 2 OTTHUMG00000182153.2 +49835 chr5 HAVANA gene 93860669 93863825 3157.0 - 0 ENSG00000251023.1 sense_intronic AC114980.1 2 OTTHUMG00000162817.1 overlapping_locus +49836 chr5 HAVANA gene 93618069 94111699 5071.0 - 0 ENSG00000113391.18 protein_coding FAM172A 2 OTTHUMG00000131329.4 ncRNA_host,overlapping_locus +49837 chr5 HAVANA gene 94567461 94568909 1449.0 + 0 ENSG00000251544.1 processed_pseudogene MTND5P12 2 OTTHUMG00000162663.1 +49838 chr5 HAVANA gene 94568929 94569470 542.0 - 0 ENSG00000254132.1 processed_pseudogene MTND6P3 2 OTTHUMG00000164091.2 overlapping_locus +49839 chr5 HAVANA gene 94569540 94570676 1137.0 + 0 ENSG00000251340.1 processed_pseudogene MTCYBP35 1 OTTHUMG00000162662.1 pseudo_consens +49840 chr5 HAVANA gene 94592771 94594791 2021.0 + 0 ENSG00000232578.4 processed_pseudogene AC093311.1 1 OTTHUMG00000162664.1 pseudo_consens +49841 chr5 HAVANA gene 94611906 94618122 409.0 - 0 ENSG00000270133.1 sense_intronic AC025766.1 2 OTTHUMG00000183942.1 overlapping_locus +49842 chr5 HAVANA gene 94152966 94618597 10403.0 - 0 ENSG00000185261.14 protein_coding KIAA0825 2 OTTHUMG00000131331.7 overlapping_locus +49843 chr5 HAVANA gene 94618347 94739436 7185.0 + 0 ENSG00000133302.12 protein_coding SLF1 2 OTTHUMG00000121133.7 +49844 chr5 HAVANA gene 94788789 94793599 1940.0 + 0 ENSG00000249175.1 antisense AC008534.1 2 OTTHUMG00000162796.1 +49845 chr5 HAVANA gene 94825961 94826694 734.0 - 0 ENSG00000243806.1 processed_pseudogene RPL7P18 1 OTTHUMG00000157803.1 pseudo_consens,overlapping_locus +49846 chr5 ENSEMBL gene 94877599 94877777 179.0 - 0 ENSG00000276514.1 misc_RNA RF02271 3 +49847 chr5 HAVANA gene 94979151 94980893 527.0 + 0 ENSG00000249545.1 antisense AC012312.1 2 OTTHUMG00000162795.1 +49848 chr5 HAVANA gene 94703741 95284575 12089.0 - 0 ENSG00000175471.19 protein_coding MCTP1 1 OTTHUMG00000162742.8 ncRNA_host,overlapping_locus +49849 chr5 HAVANA gene 95440044 95440687 644.0 + 0 ENSG00000225165.3 processed_pseudogene AC090071.1 1 OTTHUMG00000162734.1 pseudo_consens,overlapping_locus +49850 chr5 HAVANA gene 95391344 95450454 2495.0 + 0 ENSG00000153347.9 protein_coding FAM81B 2 OTTHUMG00000162837.3 overlapping_locus +49851 chr5 ENSEMBL gene 95521369 95521475 107.0 + 0 ENSG00000212259.1 snRNA RNU6-308P 3 +49852 chr5 HAVANA gene 95461755 95555007 10454.0 - 0 ENSG00000198677.11 protein_coding TTC37 2 OTTHUMG00000121165.5 +49853 chr5 HAVANA gene 95555074 95605064 4314.0 + 0 ENSG00000164291.16 protein_coding ARSK 1 OTTHUMG00000121166.2 +49854 chr5 HAVANA gene 95620078 95622142 2065.0 + 0 ENSG00000178015.4 protein_coding GPR150 2 OTTHUMG00000121170.2 +49855 chr5 HAVANA gene 95646754 95684773 5062.0 + 0 ENSG00000175449.13 protein_coding RFESD 1 OTTHUMG00000121168.5 +49856 chr5 HAVANA gene 95652181 95698711 2811.0 - 0 ENSG00000145757.15 protein_coding SPATA9 2 OTTHUMG00000121169.4 +49857 chr5 HAVANA gene 95701249 95732295 909.0 - 0 ENSG00000250240.5 antisense AC008840.1 2 OTTHUMG00000162735.1 +49858 chr5 HAVANA gene 95768999 95770700 1702.0 + 0 ENSG00000251348.1 processed_pseudogene HSPD1P11 1 OTTHUMG00000162737.1 pseudo_consens,overlapping_locus +49859 chr5 HAVANA gene 95751319 95823005 6508.0 - 0 ENSG00000173221.13 protein_coding GLRX 2 OTTHUMG00000121167.3 +49860 chr5 HAVANA gene 95713522 95824383 8833.0 + 0 ENSG00000164292.12 protein_coding RHOBTB3 2 OTTHUMG00000121171.3 overlapping_locus +49861 chr5 HAVANA gene 95834424 95835046 418.0 - 0 ENSG00000251000.1 processed_pseudogene AC008592.3 1 OTTHUMG00000162736.1 pseudo_consens +49862 chr5 HAVANA gene 95849309 95849855 547.0 + 0 ENSG00000272021.1 lincRNA AC008592.5 2 OTTHUMG00000185539.1 +49863 chr5 HAVANA gene 95835943 95852721 450.0 - 0 ENSG00000251409.1 lincRNA AC008592.4 2 OTTHUMG00000162741.1 +49864 chr5 HAVANA gene 95852232 95860133 2061.0 + 0 ENSG00000236882.7 lincRNA LINC01554 2 OTTHUMG00000122084.4 +49865 chr5 HAVANA gene 95861786 95874519 850.0 + 0 ENSG00000250362.1 processed_transcript AC008592.1 1 OTTHUMG00000162740.1 +49866 chr5 HAVANA gene 95885098 95962071 7328.0 - 0 ENSG00000118985.15 protein_coding ELL2 2 OTTHUMG00000122085.4 +49867 chr5 HAVANA gene 95973041 95973446 406.0 - 0 ENSG00000213716.3 processed_pseudogene FABP5P5 1 OTTHUMG00000162739.1 pseudo_consens,overlapping_locus +49868 chr5 HAVANA gene 95964999 95986311 571.0 - 0 ENSG00000250955.1 lincRNA AC008592.2 2 OTTHUMG00000162822.1 overlapping_locus +49869 chr5 ENSEMBL gene 96079138 96079212 75.0 + 0 ENSG00000207578.1 miRNA MIR583 3 +49870 chr5 ENSEMBL gene 96210121 96210227 107.0 - 0 ENSG00000206997.1 snRNA RNU6-524P 3 +49871 chr5 HAVANA gene 96213346 96215075 652.0 - 0 ENSG00000249746.1 lincRNA AC099509.1 1 OTTHUMG00000162820.1 +49872 chr5 HAVANA gene 96050115 96215519 704.0 + 0 ENSG00000250551.1 lincRNA MIR583HG 2 OTTHUMG00000162825.1 ncRNA_host,overlapping_locus +49873 chr5 HAVANA gene 96247776 96278751 406.0 + 0 ENSG00000250158.1 lincRNA AC099509.2 2 OTTHUMG00000162824.1 overlapping_locus +49874 chr5 HAVANA gene 96390415 96434143 5307.0 - 0 ENSG00000175426.10 protein_coding PCSK1 2 OTTHUMG00000122089.3 +49875 chr5 HAVANA gene 95962001 96631085 1488.0 + 0 ENSG00000251314.2 antisense AC104123.1 2 OTTHUMG00000162821.1 ncRNA_host,overlapping_locus +49876 chr5 HAVANA gene 96741079 96742698 565.0 - 0 ENSG00000249180.1 antisense AC020900.1 1 OTTHUMG00000162823.1 +49877 chr5 HAVANA gene 96525267 96779595 12448.0 + 0 ENSG00000153113.23 protein_coding CAST 1 OTTHUMG00000128413.11 overlapping_locus +49878 chr5 HAVANA gene 96784777 96785999 1001.0 + 0 ENSG00000248734.2 antisense AC008906.1 2 OTTHUMG00000162841.2 +49879 chr5 HAVANA gene 96804353 96806105 569.0 + 0 ENSG00000272109.1 antisense AC008906.2 2 OTTHUMG00000185540.1 +49880 chr5 HAVANA gene 96760810 96808100 7945.0 - 0 ENSG00000164307.12 protein_coding ERAP1 1 OTTHUMG00000128721.5 +49881 chr5 HAVANA gene 96875939 96919716 7422.0 + 0 ENSG00000164308.16 protein_coding ERAP2 1 OTTHUMG00000128718.3 +49882 chr5 HAVANA gene 96814028 96935809 2536.0 - 0 ENSG00000247121.6 antisense AC009126.1 2 OTTHUMG00000162867.1 +49883 chr5 HAVANA gene 96942299 96943184 362.0 + 0 ENSG00000227836.1 processed_pseudogene AC008850.1 1 OTTHUMG00000150258.1 pseudo_consens,overlapping_locus +49884 chr5 ENSEMBL gene 96962656 96962757 102.0 - 0 ENSG00000200884.1 misc_RNA RF00019 3 +49885 chr5 HAVANA gene 96935394 97037515 15266.0 + 0 ENSG00000113441.15 protein_coding LNPEP 1 OTTHUMG00000128719.4 overlapping_locus +49886 chr5 HAVANA gene 97056402 97057358 957.0 - 0 ENSG00000213701.4 processed_pseudogene SETP22 1 OTTHUMG00000162868.2 pseudo_consens +49887 chr5 HAVANA gene 97091867 97142872 4115.0 - 0 ENSG00000145721.11 protein_coding LIX1 2 OTTHUMG00000128720.4 +49888 chr5 ENSEMBL gene 97175950 97176113 164.0 - 0 ENSG00000206698.1 snRNA RNU1-73P 3 +49889 chr5 HAVANA gene 97160867 97183260 5502.0 - 0 ENSG00000058729.10 protein_coding RIOK2 1 OTTHUMG00000128723.2 ncRNA_host +49890 chr5 HAVANA gene 97188090 97201880 193.0 - 0 ENSG00000248758.1 antisense AC008883.1 2 OTTHUMG00000162865.1 +49891 chr5 HAVANA gene 97223371 97227957 414.0 - 0 ENSG00000251054.1 lincRNA AC008883.2 1 OTTHUMG00000162869.1 +49892 chr5 HAVANA gene 97336858 97337040 183.0 - 0 ENSG00000249761.1 processed_pseudogene AC074133.1 1 OTTHUMG00000162699.1 pseudo_consens +49893 chr5 HAVANA gene 97368776 97370421 1646.0 + 0 ENSG00000251389.1 processed_pseudogene YTHDF1P1 1 OTTHUMG00000162697.2 pseudo_consens,overlapping_locus +49894 chr5 HAVANA gene 97089075 97437217 1793.0 + 0 ENSG00000251513.2 lincRNA LIX1-AS1 1 OTTHUMG00000162866.2 overlapping_locus +49895 chr5 HAVANA gene 97449358 97449741 384.0 - 0 ENSG00000249977.1 processed_pseudogene AC106748.1 1 OTTHUMG00000162698.1 pseudo_consens +49896 chr5 HAVANA gene 97504696 97671046 724.0 + 0 ENSG00000250331.1 lincRNA LINC01340 2 OTTHUMG00000162701.1 +49897 chr5 HAVANA gene 97677547 97678681 1135.0 - 0 ENSG00000248931.1 processed_pseudogene MTCYBP40 2 OTTHUMG00000162798.1 +49898 chr5 HAVANA gene 97737894 97738913 1020.0 + 0 ENSG00000251193.1 processed_pseudogene AC112203.1 1 OTTHUMG00000162700.2 pseudo_consens +49899 chr5 HAVANA gene 97881420 97922695 829.0 + 0 ENSG00000248202.1 lincRNA LINC02234 2 OTTHUMG00000162710.1 +49900 chr5 HAVANA gene 98025965 98026139 175.0 + 0 ENSG00000249101.1 processed_pseudogene AC008834.1 2 OTTHUMG00000162718.1 +49901 chr5 HAVANA gene 98086260 98161193 651.0 - 0 ENSG00000248901.1 lincRNA LINC01846 2 OTTHUMG00000162711.1 +49902 chr5 HAVANA gene 98203059 98205193 523.0 + 0 ENSG00000249135.1 processed_pseudogene AC116347.2 2 OTTHUMG00000162715.1 +49903 chr5 HAVANA gene 98213402 98214121 720.0 + 0 ENSG00000238000.1 processed_pseudogene AC116347.1 1 OTTHUMG00000162714.1 pseudo_consens +49904 chr5 HAVANA gene 98338744 98339832 1089.0 + 0 ENSG00000176183.8 processed_pseudogene AC233964.1 1 OTTHUMG00000162713.1 pseudo_consens +49905 chr5 HAVANA gene 98392070 98393530 1461.0 - 0 ENSG00000250221.1 processed_pseudogene KRT8P32 1 OTTHUMG00000162712.1 pseudo_consens +49906 chr5 HAVANA gene 98402542 98402732 191.0 - 0 ENSG00000250830.1 processed_pseudogene MRPS35P2 2 OTTHUMG00000162717.1 +49907 chr5 HAVANA gene 98409675 98410100 426.0 - 0 ENSG00000249990.1 processed_pseudogene MTCO2P24 2 OTTHUMG00000162716.1 +49908 chr5 HAVANA gene 98410235 98411792 1558.0 - 0 ENSG00000249448.1 processed_pseudogene MTCO1P24 2 OTTHUMG00000162709.1 +49909 chr5 HAVANA gene 98576341 98577260 920.0 + 0 ENSG00000251102.1 processed_pseudogene CTBP2P4 1 OTTHUMG00000162748.1 pseudo_consens +49910 chr5 HAVANA gene 98679402 98681367 1966.0 + 0 ENSG00000251553.1 processed_pseudogene DDX18P4 1 OTTHUMG00000162746.1 pseudo_consens +49911 chr5 HAVANA gene 98769618 98773469 2344.0 - 0 ENSG00000246763.6 antisense RGMB-AS1 2 OTTHUMG00000162743.1 +49912 chr5 HAVANA gene 98792861 98795766 2906.0 - 0 ENSG00000279232.2 antisense AC008522.1 2 OTTHUMG00000192175.1 +49913 chr5 HAVANA gene 98768650 98798643 6671.0 + 0 ENSG00000174136.11 protein_coding RGMB 2 OTTHUMG00000162745.1 +49914 chr5 HAVANA gene 98833382 98833711 330.0 + 0 ENSG00000250162.1 processed_pseudogene CSNK1A1P3 1 OTTHUMG00000162747.2 pseudo_consens +49915 chr5 ENSEMBL gene 98889731 98889833 103.0 + 0 ENSG00000222610.1 snRNA RNU6-402P 3 +49916 chr5 HAVANA gene 98853985 98928957 10437.0 - 0 ENSG00000153922.10 protein_coding CHD1 2 OTTHUMG00000162744.3 +49917 chr5 ENSEMBL gene 98936638 98936747 110.0 - 0 ENSG00000200351.1 misc_RNA RF00019 3 +49918 chr5 HAVANA gene 98954394 98954972 579.0 + 0 ENSG00000241597.2 processed_pseudogene AC022121.1 1 OTTHUMG00000157805.2 pseudo_consens,overlapping_locus +49919 chr5 HAVANA gene 98929171 98995013 478.0 + 0 ENSG00000248489.1 lincRNA LINC02062 2 OTTHUMG00000162749.1 overlapping_locus +49920 chr5 HAVANA gene 99489559 99499367 680.0 + 0 ENSG00000249444.2 transcribed_unprocessed_pseudogene AC114324.2 2 OTTHUMG00000162760.3 +49921 chr5 HAVANA gene 99522311 99525462 3152.0 - 0 ENSG00000206356.5 processed_pseudogene AC114324.1 1 OTTHUMG00000162762.2 pseudo_consens +49922 chr5 HAVANA gene 99532628 99534611 679.0 + 0 ENSG00000227762.4 unprocessed_pseudogene GUSBP8 1 OTTHUMG00000162761.2 pseudo_consens +49923 chr5 HAVANA gene 99549432 99577957 336.0 + 0 ENSG00000249515.1 lincRNA LINC02113 1 OTTHUMG00000162763.1 +49924 chr5 HAVANA gene 99594329 99594740 412.0 - 0 ENSG00000248236.1 processed_pseudogene AC008837.1 1 OTTHUMG00000162766.1 pseudo_consens +49925 chr5 HAVANA gene 99594880 99595297 418.0 + 0 ENSG00000248928.1 processed_pseudogene AC008837.2 1 OTTHUMG00000162764.1 pseudo_consens +49926 chr5 HAVANA gene 99948295 99949583 1289.0 - 0 ENSG00000250391.1 processed_pseudogene AC092284.1 1 OTTHUMG00000162802.1 pseudo_consens +49927 chr5 HAVANA gene 99996547 99997932 1386.0 + 0 ENSG00000249963.1 processed_pseudogene EEF1A1P20 1 OTTHUMG00000162803.1 pseudo_consens +49928 chr5 ENSEMBL gene 100021804 100021906 103.0 + 0 ENSG00000199378.1 misc_RNA RF00019 3 +49929 chr5 HAVANA gene 100045928 100046374 447.0 - 0 ENSG00000270232.1 processed_pseudogene MTCYBP22 2 OTTHUMG00000185126.1 +49930 chr5 HAVANA gene 100046450 100046970 521.0 + 0 ENSG00000270230.1 processed_pseudogene MTND6P22 2 OTTHUMG00000185127.1 +49931 chr5 HAVANA gene 100046977 100048785 1809.0 - 0 ENSG00000271687.1 processed_pseudogene MTND5P10 2 OTTHUMG00000185128.1 +49932 chr5 HAVANA gene 100048988 100050362 1375.0 - 0 ENSG00000270906.1 processed_pseudogene MTND4P35 2 OTTHUMG00000185129.1 overlapping_locus +49933 chr5 HAVANA gene 100050359 100050650 292.0 - 0 ENSG00000270350.1 processed_pseudogene MTND4LP5 2 OTTHUMG00000185130.1 overlapping_locus +49934 chr5 HAVANA gene 100050719 100051063 345.0 - 0 ENSG00000271480.1 processed_pseudogene MTND3P19 2 OTTHUMG00000185131.1 +49935 chr5 HAVANA gene 100051133 100051916 784.0 - 0 ENSG00000270388.1 processed_pseudogene MTCO3P22 2 OTTHUMG00000185132.1 +49936 chr5 HAVANA gene 100051920 100052597 678.0 - 0 ENSG00000270307.1 processed_pseudogene MTATP6P2 2 OTTHUMG00000185133.1 +49937 chr5 HAVANA gene 100052859 100053539 681.0 - 0 ENSG00000270225.1 processed_pseudogene MTCO2P22 2 OTTHUMG00000185134.1 +49938 chr5 HAVANA gene 100053686 100055045 1360.0 - 0 ENSG00000271207.1 processed_pseudogene MTCO1P22 2 OTTHUMG00000185135.1 +49939 chr5 HAVANA gene 100062275 100067954 745.0 - 0 ENSG00000274455.1 unprocessed_pseudogene AC092278.1 1 OTTHUMG00000187592.1 pseudo_consens +49940 chr5 ENSEMBL gene 100153672 100153779 108.0 + 0 ENSG00000207077.1 snRNA RNU6-1119P 3 +49941 chr5 HAVANA gene 100375700 100381398 747.0 - 0 ENSG00000275374.1 unprocessed_pseudogene AC113385.3 1 OTTHUMG00000187597.1 pseudo_consens +49942 chr5 HAVANA gene 100388853 100389938 762.0 + 0 ENSG00000273957.1 unprocessed_pseudogene AC113385.2 1 OTTHUMG00000187600.1 pseudo_consens +49943 chr5 HAVANA gene 100401441 100408899 563.0 + 0 ENSG00000249787.1 lincRNA AC113385.1 1 OTTHUMG00000162804.1 +49944 chr5 HAVANA gene 100449754 100535262 1713.0 - 0 ENSG00000247877.6 lincRNA AC021086.1 2 OTTHUMG00000162801.1 +49945 chr5 HAVANA gene 100535305 100586741 1416.0 + 0 ENSG00000174132.8 protein_coding FAM174A 1 OTTHUMG00000128726.2 +49946 chr5 HAVANA gene 100654112 100657970 469.0 - 0 ENSG00000250806.2 lincRNA AC027315.1 2 OTTHUMG00000162806.1 +49947 chr5 ENSEMBL gene 100733058 100733386 329.0 + 0 ENSG00000207269.1 misc_RNA RN7SKP62 3 +49948 chr5 ENSEMBL gene 100816482 100816565 84.0 - 0 ENSG00000221263.1 miRNA MIR548P 3 +49949 chr5 HAVANA gene 100806935 100903266 7794.0 - 0 ENSG00000113532.12 protein_coding ST8SIA4 1 OTTHUMG00000128727.6 ncRNA_host +49950 chr5 ENSEMBL gene 101581830 101582128 299.0 + 0 ENSG00000277506.1 misc_RNA RN7SL802P 3 +49951 chr5 HAVANA gene 101816475 101816780 306.0 - 0 ENSG00000251261.4 unprocessed_pseudogene OR7H2P 2 OTTHUMG00000162751.2 +49952 chr5 HAVANA gene 101976296 101976798 503.0 + 0 ENSG00000249495.1 processed_pseudogene AC117525.1 1 OTTHUMG00000162752.2 pseudo_consens +49953 chr5 ENSEMBL gene 102131007 102131135 129.0 - 0 ENSG00000199786.1 rRNA_pseudogene RNA5SP188 3 +49954 chr5 HAVANA gene 102144077 102146572 325.0 + 0 ENSG00000248261.1 lincRNA AC008948.1 2 OTTHUMG00000162756.1 +49955 chr5 HAVANA gene 102233986 102296549 5334.0 - 0 ENSG00000173930.8 protein_coding SLCO4C1 2 OTTHUMG00000162757.1 +49956 chr5 ENSEMBL gene 102302504 102302810 307.0 + 0 ENSG00000222987.1 misc_RNA RN7SKP68 3 +49957 chr5 HAVANA gene 102371782 102499016 2952.0 - 0 ENSG00000205359.9 protein_coding SLCO6A1 2 OTTHUMG00000162759.2 +49958 chr5 HAVANA gene 102500541 102505670 593.0 + 0 ENSG00000249017.1 antisense AC094108.1 2 OTTHUMG00000162758.1 +49959 chr5 HAVANA gene 102605635 102606197 391.0 + 0 ENSG00000247402.2 lincRNA AC099487.1 2 OTTHUMG00000162774.1 overlapping_locus +49960 chr5 HAVANA gene 102581368 102617589 593.0 + 0 ENSG00000250958.1 lincRNA LINC00492 2 OTTHUMG00000162776.1 overlapping_locus +49961 chr5 HAVANA gene 102609156 102671559 1227.0 - 0 ENSG00000250682.5 lincRNA LINC00491 2 OTTHUMG00000162775.1 +49962 chr5 HAVANA gene 102753981 103031105 8846.0 + 0 ENSG00000145730.20 protein_coding PAM 1 OTTHUMG00000128729.5 +49963 chr5 HAVANA gene 103032376 103033031 656.0 + 0 ENSG00000175749.11 processed_pseudogene EIF3KP1 1 OTTHUMG00000162879.1 pseudo_consens +49964 chr5 HAVANA gene 103086000 103120151 4182.0 - 0 ENSG00000145723.16 protein_coding GIN1 2 OTTHUMG00000162811.3 +49965 chr5 HAVANA gene 103120149 103212799 17270.0 + 0 ENSG00000145725.19 protein_coding PPIP5K2 1 OTTHUMG00000181461.4 +49966 chr5 HAVANA gene 103246048 103253519 485.0 - 0 ENSG00000248203.1 antisense AC011362.1 2 OTTHUMG00000162810.1 +49967 chr5 HAVANA gene 103258702 103278660 3568.0 + 0 ENSG00000181751.9 protein_coding C5orf30 2 OTTHUMG00000128738.2 +49968 chr5 HAVANA gene 103408941 103412511 555.0 - 0 ENSG00000250567.1 lincRNA AC010406.1 2 OTTHUMG00000162785.1 +49969 chr5 HAVANA gene 103430406 103526618 2257.0 - 0 ENSG00000226926.7 transcribed_unitary_pseudogene PDZPH1P 2 OTTHUMG00000154669.3 +49970 chr5 HAVANA gene 103528434 103541985 432.0 - 0 ENSG00000248757.2 lincRNA LINC02115 2 OTTHUMG00000162779.2 +49971 chr5 HAVANA gene 103548855 103562793 4304.0 - 0 ENSG00000112874.9 protein_coding NUDT12 1 OTTHUMG00000128739.2 +49972 chr5 HAVANA gene 103880129 103891393 6686.0 - 0 ENSG00000283462.1 processed_transcript AC008505.1 2 OTTHUMG00000191622.1 +49973 chr5 ENSEMBL gene 104098874 104099038 165.0 + 0 ENSG00000201910.1 snRNA RNU1-140P 3 +49974 chr5 HAVANA gene 104079911 104105403 574.0 + 0 ENSG00000251026.1 lincRNA LINC02163 2 OTTHUMG00000162778.1 ncRNA_host +49975 chr5 ENSEMBL gene 104260531 104260826 296.0 - 0 ENSG00000239808.3 misc_RNA RN7SL255P 3 +49976 chr5 HAVANA gene 104434772 104435499 728.0 + 0 ENSG00000278958.1 TEC AC091931.1 2 OTTHUMG00000163150.1 +49977 chr5 ENSEMBL gene 104780288 104780389 102.0 - 0 ENSG00000252881.1 snRNA RNU6-334P 3 +49978 chr5 HAVANA gene 104773641 104799772 567.0 + 0 ENSG00000253776.1 lincRNA AC099520.2 1 OTTHUMG00000163152.2 +49979 chr5 HAVANA gene 105099473 105100098 626.0 + 0 ENSG00000232159.3 processed_pseudogene RAB9BP1 1 OTTHUMG00000164279.1 pseudo_consens +49980 chr5 HAVANA gene 104917492 105246364 1202.0 - 0 ENSG00000253584.1 lincRNA AC091987.1 1 OTTHUMG00000163702.1 overlapping_locus +49981 chr5 HAVANA gene 104383298 105392970 2409.0 - 0 ENSG00000251574.6 lincRNA AC099520.1 1 OTTHUMG00000163701.2 ncRNA_host,overlapping_locus +49982 chr5 ENSEMBL gene 105922994 105923108 115.0 - 0 ENSG00000201790.1 rRNA_pseudogene RNA5SP189 3 +49983 chr5 HAVANA gene 106415576 106417241 1666.0 - 0 ENSG00000251204.1 processed_pseudogene AC027313.1 1 OTTHUMG00000162788.1 pseudo_consens +49984 chr5 HAVANA gene 106543066 106544330 1265.0 - 0 ENSG00000250145.1 processed_pseudogene AC114940.1 2 OTTHUMG00000162800.1 +49985 chr5 ENSEMBL gene 106546665 106546803 139.0 + 0 ENSG00000252337.1 snoRNA RF00322 3 +49986 chr5 HAVANA gene 106815197 107011014 832.0 - 0 ENSG00000251027.1 lincRNA LINC01950 2 OTTHUMG00000162799.1 +49987 chr5 HAVANA gene 107195156 107195332 177.0 + 0 ENSG00000250273.1 processed_pseudogene PSMC1P5 1 OTTHUMG00000162813.1 pseudo_consens +49988 chr5 HAVANA gene 107376889 107670895 5703.0 - 0 ENSG00000184349.12 protein_coding EFNA5 1 OTTHUMG00000128741.3 +49989 chr5 HAVANA gene 107699835 107716841 1016.0 - 0 ENSG00000249959.5 lincRNA AC024587.2 2 OTTHUMG00000162814.1 +49990 chr5 HAVANA gene 107724961 107727117 2157.0 + 0 ENSG00000248827.1 processed_pseudogene AC024587.1 1 OTTHUMG00000162815.1 pseudo_consens +49991 chr5 ENSEMBL gene 107734773 107735066 294.0 - 0 ENSG00000239708.3 misc_RNA RN7SL782P 3 +49992 chr5 ENSEMBL gene 107810629 107810924 296.0 + 0 ENSG00000251732.1 misc_RNA RN7SKP122 3 +49993 chr5 HAVANA gene 107859035 108382098 8125.0 - 0 ENSG00000145743.15 protein_coding FBXL17 2 OTTHUMG00000159785.6 +49994 chr5 HAVANA gene 108593609 108593967 359.0 + 0 ENSG00000244245.1 processed_pseudogene AC133134.1 1 OTTHUMG00000157808.1 pseudo_consens +49995 chr5 HAVANA gene 108727825 108728260 436.0 - 0 ENSG00000272523.1 lincRNA LINC01023 2 OTTHUMG00000185544.1 +49996 chr5 HAVANA gene 108784098 108785552 948.0 + 0 ENSG00000249921.2 processed_pseudogene AC034207.1 1 OTTHUMG00000162838.2 pseudo_consens,overlapping_locus +49997 chr5 HAVANA gene 108818041 108830790 398.0 - 0 ENSG00000250383.1 antisense AC008871.1 2 OTTHUMG00000162849.1 +49998 chr5 ENSEMBL gene 108891437 108891546 110.0 + 0 ENSG00000207404.1 misc_RNA RF00019 3 +49999 chr5 HAVANA gene 108894347 108894628 282.0 - 0 ENSG00000250441.1 processed_pseudogene AC109481.1 1 OTTHUMG00000162851.1 pseudo_consens +50000 chr5 ENSEMBL gene 109014834 109014940 107.0 - 0 ENSG00000206593.1 snRNA RNU6-47P 3 +50001 chr5 HAVANA gene 109051315 109052457 1143.0 - 0 ENSG00000176857.5 processed_pseudogene GJA1P1 1 OTTHUMG00000162850.2 pseudo_consens +50002 chr5 HAVANA gene 108747822 109196841 13614.0 + 0 ENSG00000151422.12 protein_coding FER 2 OTTHUMG00000128751.5 ncRNA_host,overlapping_locus +50003 chr5 HAVANA gene 109237120 109326369 5471.0 - 0 ENSG00000249476.1 lincRNA AC008467.1 2 OTTHUMG00000162848.1 +50004 chr5 HAVANA gene 109334709 109409994 5217.0 - 0 ENSG00000198961.9 protein_coding PJA2 2 OTTHUMG00000128750.2 +50005 chr5 HAVANA gene 109448349 109449063 403.0 - 0 ENSG00000248867.1 processed_pseudogene AC010625.1 1 OTTHUMG00000163023.1 pseudo_consens +50006 chr5 HAVANA gene 109467353 109467952 600.0 + 0 ENSG00000251367.1 lincRNA AC091917.3 2 OTTHUMG00000163118.1 +50007 chr5 HAVANA gene 109470843 109471586 744.0 + 0 ENSG00000248876.1 lincRNA AC091917.2 2 OTTHUMG00000163114.1 +50008 chr5 HAVANA gene 109497877 109499108 566.0 + 0 ENSG00000248440.1 lincRNA AC091917.1 2 OTTHUMG00000162833.1 +50009 chr5 HAVANA gene 109588338 109589592 1255.0 + 0 ENSG00000214794.4 processed_pseudogene KRT18P42 1 OTTHUMG00000162835.1 pseudo_consens +50010 chr5 HAVANA gene 109687802 109688329 528.0 - 0 ENSG00000271849.1 lincRNA AC012603.1 2 OTTHUMG00000185546.1 +50011 chr5 ENSEMBL gene 109699500 109699834 335.0 - 0 ENSG00000202512.1 misc_RNA RN7SKP230 3 +50012 chr5 HAVANA gene 109840128 109840692 565.0 - 0 ENSG00000249068.1 processed_pseudogene AC008417.1 1 OTTHUMG00000162836.2 pseudo_consens +50013 chr5 HAVANA gene 109689366 109869625 11815.0 + 0 ENSG00000112893.9 protein_coding MAN2A1 1 OTTHUMG00000162834.3 +50014 chr5 HAVANA gene 109883182 109884751 518.0 + 0 ENSG00000254106.1 lincRNA LINC01848 1 OTTHUMG00000163576.1 +50015 chr5 HAVANA gene 109884610 109885423 814.0 - 0 ENSG00000253224.1 processed_pseudogene PGAM5P1 1 OTTHUMG00000163575.1 pseudo_consens +50016 chr5 ENSEMBL gene 110513829 110513915 87.0 - 0 ENSG00000221436.1 miRNA MIR548F3 3 +50017 chr5 ENSEMBL gene 110684794 110684927 134.0 - 0 ENSG00000207177.1 snoRNA RF00432 3 +50018 chr5 HAVANA gene 110289233 110738956 9563.0 - 0 ENSG00000186952.14 protein_coding TMEM232 1 OTTHUMG00000163297.9 ncRNA_host +50019 chr5 HAVANA gene 110738136 110765161 8283.0 + 0 ENSG00000164209.16 protein_coding SLC25A46 1 OTTHUMG00000128794.7 +50020 chr5 HAVANA gene 110908284 110908713 430.0 + 0 ENSG00000270779.1 processed_pseudogene AC008782.1 1 OTTHUMG00000184570.1 pseudo_consens +50021 chr5 HAVANA gene 110948029 110950780 2752.0 - 0 ENSG00000248966.1 processed_pseudogene BCLAF1P1 1 OTTHUMG00000163298.1 pseudo_consens +50022 chr5 HAVANA gene 110983563 110984466 904.0 - 0 ENSG00000251627.1 processed_pseudogene AC010395.2 1 OTTHUMG00000163299.1 pseudo_consens,overlapping_locus +50023 chr5 HAVANA gene 110970951 111008899 697.0 - 0 ENSG00000248428.1 lincRNA AC010395.1 2 OTTHUMG00000163296.1 overlapping_locus +50024 chr5 HAVANA gene 111070062 111078024 4282.0 + 0 ENSG00000145777.14 protein_coding TSLP 1 OTTHUMG00000128791.3 +50025 chr5 HAVANA gene 111076921 111092115 442.0 - 0 ENSG00000253613.2 antisense AC008572.1 2 OTTHUMG00000163703.1 +50026 chr5 HAVANA gene 111091716 111130502 7656.0 + 0 ENSG00000134987.11 protein_coding WDR36 1 OTTHUMG00000128790.7 +50027 chr5 HAVANA gene 111155244 111156152 458.0 - 0 ENSG00000250728.1 processed_pseudogene AC010468.3 1 OTTHUMG00000162846.1 pseudo_consens +50028 chr5 HAVANA gene 111192226 111193042 817.0 - 0 ENSG00000214784.4 processed_pseudogene AC010468.1 1 OTTHUMG00000157820.1 pseudo_consens +50029 chr5 HAVANA gene 111265809 111270089 438.0 - 0 ENSG00000249318.1 antisense AC010468.2 2 OTTHUMG00000162847.1 +50030 chr5 HAVANA gene 111277517 111302567 565.0 - 0 ENSG00000248268.1 antisense AC010275.1 2 OTTHUMG00000162845.1 +50031 chr5 HAVANA gene 111223653 111494886 13910.0 + 0 ENSG00000152495.10 protein_coding CAMK4 2 OTTHUMG00000128792.3 +50032 chr5 HAVANA gene 111496033 111512590 5684.0 - 0 ENSG00000164211.12 protein_coding STARD4 2 OTTHUMG00000128793.3 +50033 chr5 HAVANA gene 111572102 111572239 138.0 - 0 ENSG00000249619.1 processed_pseudogene HMGN1P13 1 OTTHUMG00000162843.1 pseudo_consens +50034 chr5 HAVANA gene 111572236 111572398 163.0 + 0 ENSG00000251099.2 processed_pseudogene AC008967.1 2 OTTHUMG00000162844.2 overlapping_locus +50035 chr5 ENSEMBL gene 111719769 111720061 293.0 - 0 ENSG00000253057.1 misc_RNA RN7SKP57 3 +50036 chr5 HAVANA gene 111512226 111739726 5647.0 + 0 ENSG00000246859.2 antisense STARD4-AS1 2 OTTHUMG00000162858.2 overlapping_locus +50037 chr5 HAVANA gene 111846050 111846566 517.0 - 0 ENSG00000249439.1 processed_pseudogene HMGN1P14 2 OTTHUMG00000162859.1 overlapping_locus +50038 chr5 HAVANA gene 111662621 111997464 9337.0 - 0 ENSG00000134986.13 protein_coding NREP 1 OTTHUMG00000128795.5 ncRNA_host,overlapping_locus +50039 chr5 HAVANA gene 111912508 112017309 851.0 + 0 ENSG00000250095.5 antisense NREP-AS1 2 OTTHUMG00000162860.1 +50040 chr5 ENSEMBL gene 112161485 112161617 133.0 + 0 ENSG00000238363.1 snoRNA SNORA13 3 +50041 chr5 HAVANA gene 112160526 112164276 3344.0 + 0 ENSG00000224032.6 lincRNA EPB41L4A-AS1 2 OTTHUMG00000128803.3 ncRNA_host +50042 chr5 HAVANA gene 112173570 112175548 457.0 + 0 ENSG00000250882.1 antisense AC010261.1 2 OTTHUMG00000162896.1 +50043 chr5 HAVANA gene 112192020 112210139 1167.0 + 0 ENSG00000251187.5 antisense AC010261.2 2 OTTHUMG00000162900.1 +50044 chr5 HAVANA gene 112228283 112257309 711.0 + 0 ENSG00000251076.1 antisense AC104126.1 2 OTTHUMG00000162899.1 +50045 chr5 HAVANA gene 112363456 112363666 211.0 - 0 ENSG00000248350.1 processed_pseudogene AC010265.1 1 OTTHUMG00000162898.1 pseudo_consens,overlapping_locus +50046 chr5 HAVANA gene 112142441 112419316 8582.0 - 0 ENSG00000129595.12 protein_coding EPB41L4A 2 OTTHUMG00000162902.3 overlapping_locus +50047 chr5 HAVANA gene 112419583 112420978 1396.0 + 0 ENSG00000278921.2 lincRNA EPB41L4A-DT 2 OTTHUMG00000169519.1 +50048 chr5 HAVANA gene 112452703 112452989 287.0 - 0 ENSG00000248430.1 processed_pseudogene HMGB3P16 1 OTTHUMG00000162897.1 pseudo_consens +50049 chr5 HAVANA gene 112546973 112547505 533.0 + 0 ENSG00000251014.1 processed_pseudogene AC137549.1 1 OTTHUMG00000162903.1 pseudo_consens +50050 chr5 HAVANA gene 112628436 112632100 950.0 + 0 ENSG00000250358.5 lincRNA LINC02200 2 OTTHUMG00000162901.1 +50051 chr5 HAVANA gene 112777630 112778161 532.0 - 0 ENSG00000250045.2 processed_pseudogene CBX3P3 1 OTTHUMG00000162857.3 pseudo_consens +50052 chr5 ENSEMBL gene 112778363 112778469 107.0 + 0 ENSG00000212370.1 snRNA RNU6-482P 3 +50053 chr5 HAVANA gene 112707498 112846239 12440.0 + 0 ENSG00000134982.16 protein_coding APC 2 OTTHUMG00000128806.7 ncRNA_host,overlapping_locus +50054 chr5 HAVANA gene 112827213 112867582 694.0 + 0 ENSG00000258864.1 protein_coding AC008575.1 2 OTTHUMG00000171788.2 overlapping_locus +50055 chr5 HAVANA gene 112885094 112885745 652.0 + 0 ENSG00000249947.2 processed_pseudogene XBP1P1 1 OTTHUMG00000162854.2 pseudo_consens,overlapping_locus +50056 chr5 HAVANA gene 112891610 112893079 1470.0 + 0 ENSG00000212643.3 transcribed_processed_pseudogene ZRSR2P1 2 OTTHUMG00000163143.4 overlapping_locus +50057 chr5 HAVANA gene 112861188 112898371 10517.0 + 0 ENSG00000153037.14 protein_coding SRP19 1 OTTHUMG00000186064.5 overlapping_locus +50058 chr5 HAVANA gene 112876379 112922539 4230.0 - 0 ENSG00000129625.12 protein_coding REEP5 1 OTTHUMG00000128807.6 +50059 chr5 HAVANA gene 112976702 113020970 9951.0 + 0 ENSG00000172795.15 protein_coding DCP2 1 OTTHUMG00000162853.5 +50060 chr5 HAVANA gene 113432554 113435031 2478.0 - 0 ENSG00000212122.3 protein_coding TSSK1B 2 OTTHUMG00000128835.2 overlapping_locus,retrogene +50061 chr5 HAVANA gene 113323028 113437174 4194.0 + 0 ENSG00000232633.4 antisense AC079465.1 1 OTTHUMG00000162864.2 +50062 chr5 HAVANA gene 113022099 113488830 10746.0 - 0 ENSG00000171444.17 protein_coding MCC 2 OTTHUMG00000128804.10 overlapping_locus +50063 chr5 ENSEMBL gene 113493835 113493960 126.0 + 0 ENSG00000251741.1 snRNA RNU4ATAC13P 3 +50064 chr5 HAVANA gene 113513683 113595285 10816.0 + 0 ENSG00000047188.15 protein_coding YTHDC2 1 OTTHUMG00000128837.6 +50065 chr5 ENSEMBL gene 114253513 114253754 242.0 + 0 ENSG00000222706.1 misc_RNA RN7SKP89 3 +50066 chr5 HAVANA gene 114055545 114496500 6489.0 + 0 ENSG00000080709.15 protein_coding KCNN2 2 OTTHUMG00000128836.12 ncRNA_host +50067 chr5 HAVANA gene 114576041 114579970 751.0 + 0 ENSG00000251542.1 lincRNA LINC01957 2 OTTHUMG00000162872.1 +50068 chr5 HAVANA gene 114488997 114668410 708.0 - 0 ENSG00000246316.7 antisense AC010230.1 2 OTTHUMG00000162871.1 +50069 chr5 HAVANA gene 115031273 115031894 622.0 - 0 ENSG00000251132.1 lincRNA AC094104.2 2 OTTHUMG00000163155.1 +50070 chr5 HAVANA gene 115087892 115088475 584.0 - 0 ENSG00000250242.1 lincRNA AC094104.1 2 OTTHUMG00000163153.1 +50071 chr5 HAVANA gene 115148764 115149644 881.0 - 0 ENSG00000250472.1 sense_intronic TRIM36-IT1 2 OTTHUMG00000163154.1 overlapping_locus +50072 chr5 HAVANA gene 115124762 115180546 6113.0 - 0 ENSG00000152503.9 protein_coding TRIM36 1 OTTHUMG00000128892.4 overlapping_locus +50073 chr5 HAVANA gene 115188563 115188932 370.0 + 0 ENSG00000249791.1 antisense AC008494.2 2 OTTHUMG00000162913.1 +50074 chr5 HAVANA gene 115204012 115262872 10064.0 - 0 ENSG00000164219.9 protein_coding PGGT1B 2 OTTHUMG00000128893.5 +50075 chr5 HAVANA gene 115262505 115263448 944.0 + 0 ENSG00000271797.1 antisense AC008494.3 2 OTTHUMG00000185548.1 +50076 chr5 HAVANA gene 115264669 115265464 796.0 - 0 ENSG00000243304.3 processed_pseudogene AC008494.1 1 OTTHUMG00000157821.3 pseudo_consens +50077 chr5 HAVANA gene 115289036 115289330 295.0 - 0 ENSG00000250197.1 processed_pseudogene HMGN1P15 1 OTTHUMG00000162909.1 pseudo_consens,overlapping_locus +50078 chr5 HAVANA gene 115267188 115296831 3289.0 - 0 ENSG00000164221.12 protein_coding CCDC112 1 OTTHUMG00000128894.3 overlapping_locus +50079 chr5 HAVANA gene 115389643 115392370 2728.0 - 0 ENSG00000249026.2 processed_pseudogene CTNNA1P1 1 OTTHUMG00000162908.2 pseudo_consens +50080 chr5 HAVANA gene 115402380 115402962 583.0 + 0 ENSG00000248722.1 processed_pseudogene AK3P4 1 OTTHUMG00000162914.2 pseudo_consens +50081 chr5 HAVANA gene 115489634 115489931 298.0 + 0 ENSG00000249944.1 processed_pseudogene AC008628.2 1 OTTHUMG00000162910.1 pseudo_consens +50082 chr5 HAVANA gene 115493557 115493821 265.0 + 0 ENSG00000249433.1 processed_pseudogene AC008628.1 1 OTTHUMG00000162906.1 pseudo_consens +50083 chr5 HAVANA gene 115512077 115513694 1618.0 + 0 ENSG00000250444.1 processed_pseudogene CCT5P1 1 OTTHUMG00000162916.1 pseudo_consens +50084 chr5 HAVANA gene 115520908 115544894 5816.0 - 0 ENSG00000145780.7 protein_coding FEM1C 2 OTTHUMG00000128895.4 +50085 chr5 HAVANA gene 115578650 115602479 3244.0 - 0 ENSG00000243414.5 protein_coding TICAM2 1 OTTHUMG00000162905.2 overlapping_locus +50086 chr5 HAVANA gene 115602057 115620659 1218.0 + 0 ENSG00000249249.1 antisense AC010226.1 2 OTTHUMG00000155201.2 +50087 chr5 HAVANA gene 115578642 115626161 3728.0 - 0 ENSG00000251201.8 protein_coding TMED7-TICAM2 2 OTTHUMG00000162911.1 overlapping_locus +50088 chr5 HAVANA gene 115613508 115632992 3894.0 - 0 ENSG00000134970.13 protein_coding TMED7 1 OTTHUMG00000132013.7 overlapping_locus +50089 chr5 HAVANA gene 115691462 115692167 706.0 - 0 ENSG00000249021.1 lincRNA AC008549.2 2 OTTHUMG00000163234.1 +50090 chr5 HAVANA gene 115738978 115756527 1422.0 + 0 ENSG00000248709.2 lincRNA AC008549.1 2 OTTHUMG00000163233.3 +50091 chr5 HAVANA gene 115770586 115770989 404.0 + 0 ENSG00000251118.1 processed_pseudogene AC008549.3 1 OTTHUMG00000162915.2 pseudo_consens +50092 chr5 ENSEMBL gene 115774319 115774502 184.0 - 0 ENSG00000222598.1 snRNA RNU2-49P 3 +50093 chr5 HAVANA gene 115804733 115816954 2189.0 - 0 ENSG00000129596.4 protein_coding CDO1 2 OTTHUMG00000128891.3 +50094 chr5 HAVANA gene 115828200 115841858 8888.0 - 0 ENSG00000145782.12 protein_coding ATG12 2 OTTHUMG00000128889.3 +50095 chr5 HAVANA gene 115841481 115914081 3198.0 + 0 ENSG00000177879.15 protein_coding AP3S1 2 OTTHUMG00000128887.3 +50096 chr5 HAVANA gene 115974513 115976275 1763.0 - 0 ENSG00000248295.2 processed_pseudogene DDX43P1 1 OTTHUMG00000162907.2 pseudo_consens +50097 chr5 HAVANA gene 115962454 116027619 6636.0 + 0 ENSG00000172901.19 protein_coding LVRN 1 OTTHUMG00000128890.4 +50098 chr5 HAVANA gene 116051917 116052289 373.0 - 0 ENSG00000185641.6 processed_pseudogene AC034236.1 2 OTTHUMG00000157822.2 +50099 chr5 HAVANA gene 116032324 116060118 1914.0 + 0 ENSG00000268223.5 protein_coding ARL14EPL 2 OTTHUMG00000182725.4 +50100 chr5 HAVANA gene 116078110 116078570 461.0 - 0 ENSG00000272265.1 lincRNA AC034236.3 2 OTTHUMG00000185551.1 +50101 chr5 HAVANA gene 116083807 116085416 1610.0 - 0 ENSG00000271918.1 antisense AC034236.2 2 OTTHUMG00000185552.1 +50102 chr5 ENSEMBL gene 116188455 116188552 98.0 - 0 ENSG00000212457.1 snRNA RNU6-644P 3 +50103 chr5 HAVANA gene 116218026 116218295 270.0 - 0 ENSG00000232916.1 processed_pseudogene HMGN2P27 2 OTTHUMG00000162924.1 +50104 chr5 HAVANA gene 116302354 116304134 206.0 - 0 ENSG00000250015.1 lincRNA AC018752.1 2 OTTHUMG00000162923.1 +50105 chr5 HAVANA gene 116084991 116412762 2464.0 + 0 ENSG00000145781.8 protein_coding COMMD10 2 OTTHUMG00000162922.1 +50106 chr5 HAVANA gene 116447547 116508276 2829.0 + 0 ENSG00000248445.5 antisense SEMA6A-AS1 2 OTTHUMG00000162986.1 +50107 chr5 HAVANA gene 116562562 116562930 369.0 + 0 ENSG00000239528.1 processed_pseudogene RPS14P8 1 OTTHUMG00000157827.1 pseudo_consens +50108 chr5 HAVANA gene 116443616 116574934 10956.0 - 0 ENSG00000092421.16 protein_coding SEMA6A 2 OTTHUMG00000162987.6 +50109 chr5 HAVANA gene 116574482 116591398 482.0 + 0 ENSG00000249167.1 lincRNA SEMA6A-AS2 2 OTTHUMG00000162882.1 +50110 chr5 HAVANA gene 116716243 116716650 408.0 + 0 ENSG00000197575.6 processed_pseudogene RPS17P2 1 OTTHUMG00000157828.1 pseudo_consens +50111 chr5 HAVANA gene 116742991 116762209 707.0 - 0 ENSG00000251311.1 lincRNA LINC02214 2 OTTHUMG00000162883.1 +50112 chr5 HAVANA gene 116820993 116830187 553.0 - 0 ENSG00000249150.1 lincRNA AC010267.1 2 OTTHUMG00000162884.1 +50113 chr5 HAVANA gene 117019548 117019679 132.0 - 0 ENSG00000250650.1 processed_pseudogene AC093534.1 2 OTTHUMG00000162880.1 +50114 chr5 HAVANA gene 117031200 117038569 420.0 + 0 ENSG00000250949.1 lincRNA AC093534.2 2 OTTHUMG00000162881.1 +50115 chr5 HAVANA gene 117301104 117301442 339.0 - 0 ENSG00000243758.1 processed_pseudogene RPL35AP15 1 OTTHUMG00000157829.2 pseudo_consens +50116 chr5 HAVANA gene 117313085 117330149 3788.0 + 0 ENSG00000285809.1 lincRNA AC093295.1 2 OTTHUMG00000193284.1 +50117 chr5 HAVANA gene 117415509 117546298 1144.0 + 0 ENSG00000248663.6 lincRNA LINC00992 2 OTTHUMG00000162885.2 +50118 chr5 HAVANA gene 117719240 117722097 926.0 - 0 ENSG00000251477.1 processed_pseudogene AC114322.1 2 OTTHUMG00000162893.1 +50119 chr5 HAVANA gene 117778826 117779532 707.0 - 0 ENSG00000249582.1 processed_pseudogene RPL7L1P4 1 OTTHUMG00000162891.1 pseudo_consens +50120 chr5 HAVANA gene 117925008 118266035 1319.0 + 0 ENSG00000249797.1 lincRNA LINC02147 2 OTTHUMG00000162888.1 +50121 chr5 HAVANA gene 118282575 118284782 1223.0 + 0 ENSG00000250427.1 lincRNA LINC02148 2 OTTHUMG00000162887.1 +50122 chr5 HAVANA gene 118468156 118562117 3385.0 - 0 ENSG00000250891.1 lincRNA LINC02208 2 OTTHUMG00000162951.2 +50123 chr5 HAVANA gene 118575575 118581324 581.0 + 0 ENSG00000249551.1 lincRNA LINC02216 2 OTTHUMG00000162954.1 +50124 chr5 HAVANA gene 118596188 118628092 543.0 + 0 ENSG00000249128.1 lincRNA LINC02215 2 OTTHUMG00000162955.1 +50125 chr5 ENSEMBL gene 118758211 118758274 64.0 + 0 ENSG00000238904.1 snRNA RNU7-34P 3 +50126 chr5 HAVANA gene 118760474 118785459 497.0 - 0 ENSG00000249426.1 lincRNA AC093206.1 2 OTTHUMG00000162962.1 +50127 chr5 HAVANA gene 118973796 118974122 327.0 + 0 ENSG00000197744.5 processed_pseudogene PTMAP2 2 OTTHUMG00000162960.1 +50128 chr5 ENSEMBL gene 118974586 118974670 85.0 + 0 ENSG00000283498.1 miRNA MIR1244-2 3 +50129 chr5 HAVANA gene 118837322 118988545 4617.0 - 0 ENSG00000169570.9 protein_coding DTWD2 2 OTTHUMG00000162956.6 +50130 chr5 ENSEMBL gene 119007571 119007668 98.0 + 0 ENSG00000223179.3 snRNA RNU6-373P 3 +50131 chr5 HAVANA gene 119010060 119010542 483.0 + 0 ENSG00000250678.1 processed_pseudogene AC008629.2 1 OTTHUMG00000162953.1 pseudo_consens +50132 chr5 HAVANA gene 119011471 119012056 586.0 + 0 ENSG00000250928.1 processed_pseudogene AC008629.3 1 OTTHUMG00000162952.1 pseudo_consens +50133 chr5 HAVANA gene 119006347 119070890 1335.0 - 0 ENSG00000249494.5 antisense AC008629.1 2 OTTHUMG00000162961.1 +50134 chr5 HAVANA gene 119126782 119128444 1271.0 - 0 ENSG00000248885.1 processed_pseudogene AC118465.1 1 OTTHUMG00000162957.1 pseudo_consens +50135 chr5 HAVANA gene 119132651 119132882 232.0 - 0 ENSG00000248979.2 processed_pseudogene LAMTOR3P2 1 OTTHUMG00000162950.2 pseudo_consens +50136 chr5 ENSEMBL gene 119138859 119138965 107.0 + 0 ENSG00000206786.1 snRNA RNU6-701P 3 +50137 chr5 ENSEMBL gene 119154637 119154716 80.0 + 0 ENSG00000264536.1 miRNA MIR5706 3 +50138 chr5 HAVANA gene 119037772 119249138 13680.0 + 0 ENSG00000172869.14 protein_coding DMXL1 2 OTTHUMG00000128898.5 ncRNA_host +50139 chr5 ENSEMBL gene 119306343 119306631 289.0 - 0 ENSG00000243333.3 misc_RNA RN7SL174P 3 +50140 chr5 HAVANA gene 119268692 119399688 9591.0 + 0 ENSG00000145779.7 protein_coding TNFAIP8 1 OTTHUMG00000162949.7 +50141 chr5 ENSEMBL gene 119445716 119445833 118.0 + 0 ENSG00000202092.1 rRNA_pseudogene RNA5SP190 3 +50142 chr5 HAVANA gene 119547131 119547606 476.0 - 0 ENSG00000213663.4 processed_pseudogene AC010409.1 1 OTTHUMG00000157831.1 pseudo_consens +50143 chr5 HAVANA gene 119555250 119555658 409.0 - 0 ENSG00000249919.1 processed_pseudogene FABP5P6 1 OTTHUMG00000162947.1 pseudo_consens +50144 chr5 HAVANA gene 119629559 119635822 1378.0 + 0 ENSG00000164334.15 protein_coding FAM170A 2 OTTHUMG00000162946.2 overlapping_locus +50145 chr5 HAVANA gene 119452443 119637199 8231.0 + 0 ENSG00000133835.15 protein_coding HSD17B4 1 OTTHUMG00000128899.6 overlapping_locus +50146 chr5 HAVANA gene 119652523 119653000 478.0 - 0 ENSG00000250895.1 processed_pseudogene AC010409.2 1 OTTHUMG00000162945.1 pseudo_consens +50147 chr5 HAVANA gene 119680197 119681080 884.0 + 0 ENSG00000234259.3 processed_pseudogene AC008550.1 1 OTTHUMG00000162948.1 pseudo_consens +50148 chr5 HAVANA gene 120245448 120333502 433.0 - 0 ENSG00000251293.1 lincRNA AC008574.1 2 OTTHUMG00000162926.1 +50149 chr5 ENSEMBL gene 120337549 120337653 105.0 - 0 ENSG00000251975.1 snRNA RNU6-718P 3 +50150 chr5 HAVANA gene 120345907 120404837 517.0 - 0 ENSG00000261036.1 lincRNA AC113418.1 2 OTTHUMG00000173468.1 +50151 chr5 HAVANA gene 120658077 120658371 295.0 - 0 ENSG00000270741.1 processed_pseudogene PRELID3BP8 1 OTTHUMG00000184307.1 pseudo_consens +50152 chr5 HAVANA gene 120464278 120687332 2274.0 + 0 ENSG00000184838.14 protein_coding PRR16 2 OTTHUMG00000128903.4 +50153 chr5 ENSEMBL gene 120710698 120710840 143.0 - 0 ENSG00000222609.1 snRNA RNU4-69P 3 +50154 chr5 HAVANA gene 120781218 120790778 1114.0 + 0 ENSG00000248927.1 lincRNA AC114284.1 2 OTTHUMG00000162927.1 +50155 chr5 HAVANA gene 121040090 121044032 885.0 + 0 ENSG00000251135.2 processed_pseudogene AC008565.1 1 OTTHUMG00000163021.2 pseudo_consens +50156 chr5 HAVANA gene 121059244 121060953 666.0 + 0 ENSG00000248853.1 processed_pseudogene AC113352.1 2 OTTHUMG00000163022.1 +50157 chr5 HAVANA gene 121195980 121196210 231.0 - 0 ENSG00000250847.1 unprocessed_pseudogene AC010350.1 2 OTTHUMG00000162942.1 +50158 chr5 HAVANA gene 121199704 121357398 2713.0 + 0 ENSG00000229855.8 lincRNA AC008568.1 2 OTTHUMG00000162941.5 +50159 chr5 HAVANA gene 121363002 121365314 2313.0 + 0 ENSG00000279860.1 TEC AC008568.2 2 OTTHUMG00000175432.1 +50160 chr5 HAVANA gene 121575848 121576320 473.0 - 0 ENSG00000244088.1 processed_pseudogene RPL23AP44 1 OTTHUMG00000157833.1 pseudo_consens +50161 chr5 HAVANA gene 121616247 121616807 561.0 + 0 ENSG00000213661.3 processed_pseudogene AC106806.1 1 OTTHUMG00000157834.1 pseudo_consens +50162 chr5 HAVANA gene 121671373 121671872 500.0 - 0 ENSG00000249600.1 processed_pseudogene AC106806.2 1 OTTHUMG00000162943.1 pseudo_consens +50163 chr5 HAVANA gene 121851955 121852833 879.0 + 0 ENSG00000181867.2 protein_coding FTMT 2 OTTHUMG00000128912.1 retrogene +50164 chr5 HAVANA gene 121961961 122075570 3111.0 + 0 ENSG00000151304.5 protein_coding SRFBP1 2 OTTHUMG00000162970.1 +50165 chr5 HAVANA gene 122063195 122078360 5547.0 - 0 ENSG00000113083.13 protein_coding LOX 2 OTTHUMG00000128914.2 +50166 chr5 HAVANA gene 122129513 122153571 2118.0 + 0 ENSG00000164185.5 protein_coding ZNF474 2 OTTHUMG00000128911.4 overlapping_locus +50167 chr5 HAVANA gene 122128762 122154856 731.0 - 0 ENSG00000247311.2 antisense AC010255.1 2 OTTHUMG00000162968.1 overlapping_locus +50168 chr5 HAVANA gene 122154496 122156015 428.0 - 0 ENSG00000249610.1 antisense AC010255.2 1 OTTHUMG00000162971.1 overlapping_locus +50169 chr5 HAVANA gene 122129622 122183949 3209.0 + 0 ENSG00000250803.6 protein_coding AC010255.3 2 OTTHUMG00000162972.2 overlapping_locus +50170 chr5 HAVANA gene 122311297 122311673 377.0 - 0 ENSG00000272139.1 antisense AC113349.2 2 OTTHUMG00000185556.1 +50171 chr5 HAVANA gene 122321291 122323358 583.0 - 0 ENSG00000249621.1 lincRNA AC113349.1 2 OTTHUMG00000162974.1 +50172 chr5 HAVANA gene 122369762 122383568 563.0 - 0 ENSG00000249916.1 antisense AC119150.1 2 OTTHUMG00000162969.1 +50173 chr5 HAVANA gene 122311354 122464219 7325.0 + 0 ENSG00000064692.18 protein_coding SNCAIP 1 OTTHUMG00000128915.6 +50174 chr5 HAVANA gene 122436497 122479087 2265.0 - 0 ENSG00000250328.5 antisense MGC32805 2 OTTHUMG00000162973.1 +50175 chr5 HAVANA gene 122675795 122676755 961.0 + 0 ENSG00000240058.3 processed_pseudogene ARGFXP1 2 OTTHUMG00000159399.3 +50176 chr5 HAVANA gene 122628952 122730685 2377.0 - 0 ENSG00000251538.6 lincRNA LINC02201 2 OTTHUMG00000162984.2 +50177 chr5 HAVANA gene 122774996 122830108 4254.0 + 0 ENSG00000205302.6 protein_coding SNX2 1 OTTHUMG00000163020.2 +50178 chr5 HAVANA gene 122832356 122834533 2178.0 + 0 ENSG00000260686.1 sense_overlapping AC008669.1 2 OTTHUMG00000173460.1 +50179 chr5 ENSEMBL gene 123022487 123022783 297.0 - 0 ENSG00000263432.2 misc_RNA RN7SL689P 3 +50180 chr5 HAVANA gene 122843439 123029354 3550.0 + 0 ENSG00000064652.10 protein_coding SNX24 2 OTTHUMG00000128913.2 +50181 chr5 HAVANA gene 123023250 123036741 2098.0 - 0 ENSG00000168938.5 protein_coding PPIC 2 OTTHUMG00000128921.2 +50182 chr5 HAVANA gene 123036271 123054667 561.0 + 0 ENSG00000249996.1 antisense AC106786.2 1 OTTHUMG00000162982.1 +50183 chr5 ENSEMBL gene 123070782 123071080 299.0 + 0 ENSG00000276047.1 misc_RNA RN7SL711P 3 +50184 chr5 HAVANA gene 123087248 123090299 1020.0 - 0 ENSG00000223652.2 antisense AC106786.1 2 OTTHUMG00000150470.2 +50185 chr5 HAVANA gene 123089121 123194266 9350.0 + 0 ENSG00000061455.10 protein_coding PRDM6 2 OTTHUMG00000150469.3 +50186 chr5 HAVANA gene 123236079 123236370 292.0 + 0 ENSG00000213655.4 processed_pseudogene AC010493.1 1 OTTHUMG00000162983.3 pseudo_consens +50187 chr5 HAVANA gene 123400922 123402344 1423.0 - 0 ENSG00000250539.1 processed_pseudogene KRT8P33 1 OTTHUMG00000162977.1 pseudo_consens,overlapping_locus +50188 chr5 HAVANA gene 123344885 123423592 6057.0 - 0 ENSG00000168944.15 protein_coding CEP120 1 OTTHUMG00000128922.6 overlapping_locus +50189 chr5 HAVANA gene 123468781 123469429 649.0 - 0 ENSG00000249400.1 processed_pseudogene HMGB3P17 1 OTTHUMG00000162975.2 pseudo_consens +50190 chr5 HAVANA gene 123508736 123509187 452.0 - 0 ENSG00000279772.1 TEC AC026422.1 2 OTTHUMG00000175452.1 +50191 chr5 HAVANA gene 123512099 123617045 5000.0 + 0 ENSG00000151292.17 protein_coding CSNK1G3 2 OTTHUMG00000128923.6 +50192 chr5 HAVANA gene 123636110 123637403 1294.0 + 0 ENSG00000235275.3 processed_pseudogene KRT18P16 1 OTTHUMG00000162976.2 pseudo_consens +50193 chr5 HAVANA gene 124220579 124221077 499.0 - 0 ENSG00000250862.1 processed_pseudogene HMGB1P29 1 OTTHUMG00000162979.2 pseudo_consens +50194 chr5 HAVANA gene 124395603 124400655 935.0 + 0 ENSG00000251421.2 lincRNA AC016556.1 2 OTTHUMG00000163244.2 overlapping_locus +50195 chr5 HAVANA gene 124059794 124405079 1011.0 - 0 ENSG00000253807.5 lincRNA LINC01170 2 OTTHUMG00000163624.2 +50196 chr5 HAVANA gene 124455373 124460098 608.0 + 0 ENSG00000248600.1 lincRNA AC025465.2 1 OTTHUMG00000163257.1 +50197 chr5 HAVANA gene 124459912 124460549 638.0 - 0 ENSG00000251214.1 lincRNA AC025465.4 2 OTTHUMG00000162990.1 +50198 chr5 HAVANA gene 124469591 124469901 311.0 + 0 ENSG00000250438.1 lincRNA AC025465.3 2 OTTHUMG00000162993.1 +50199 chr5 HAVANA gene 124492775 124536348 797.0 - 0 ENSG00000248296.1 lincRNA AC025465.1 2 OTTHUMG00000162996.1 +50200 chr5 HAVANA gene 124707827 124710737 832.0 + 0 ENSG00000249112.1 antisense AC112196.1 2 OTTHUMG00000162997.2 +50201 chr5 HAVANA gene 124734618 124735175 558.0 - 0 ENSG00000251456.1 sense_intronic AC113398.2 2 OTTHUMG00000163254.1 overlapping_locus +50202 chr5 HAVANA gene 124636913 124748807 6922.0 - 0 ENSG00000168916.15 protein_coding ZNF608 1 OTTHUMG00000162999.4 overlapping_locus +50203 chr5 HAVANA gene 124808828 124809233 406.0 - 0 ENSG00000242814.2 processed_pseudogene AC113398.1 1 OTTHUMG00000157837.2 pseudo_consens +50204 chr5 HAVANA gene 124829472 124830290 819.0 + 0 ENSG00000248443.1 lincRNA AC109464.1 2 OTTHUMG00000162998.1 +50205 chr5 HAVANA gene 124868972 124869914 943.0 - 0 ENSG00000249261.1 lincRNA AC109464.2 2 OTTHUMG00000162995.1 +50206 chr5 HAVANA gene 125074665 125074980 316.0 + 0 ENSG00000250194.1 processed_pseudogene AC109458.1 2 OTTHUMG00000162988.1 +50207 chr5 HAVANA gene 125265528 125265651 124.0 + 0 ENSG00000250721.1 processed_pseudogene HMGB1P22 1 OTTHUMG00000163013.1 pseudo_consens +50208 chr5 ENSEMBL gene 125350868 125351131 264.0 - 0 ENSG00000222107.1 misc_RNA RN7SKP117 3 +50209 chr5 HAVANA gene 125376828 125377439 612.0 - 0 ENSG00000250402.2 lincRNA AC109471.1 2 OTTHUMG00000163006.2 +50210 chr5 HAVANA gene 124808981 125602227 7412.0 + 0 ENSG00000260192.2 lincRNA LINC02240 2 OTTHUMG00000163260.3 +50211 chr5 HAVANA gene 125862746 125863193 448.0 - 0 ENSG00000249950.1 processed_pseudogene AC010587.2 1 OTTHUMG00000163007.1 pseudo_consens +50212 chr5 HAVANA gene 125886285 125886753 469.0 - 0 ENSG00000249904.1 processed_pseudogene AC010587.1 1 OTTHUMG00000163014.1 pseudo_consens +50213 chr5 HAVANA gene 125966777 125968085 821.0 - 0 ENSG00000241888.2 processed_pseudogene RPSAP37 1 OTTHUMG00000157839.3 pseudo_consens +50214 chr5 HAVANA gene 126179577 126193850 566.0 + 0 ENSG00000248107.1 lincRNA LINC02039 2 OTTHUMG00000163017.1 +50215 chr5 HAVANA gene 126076800 126279801 547.0 - 0 ENSG00000248752.1 lincRNA AC010235.1 2 OTTHUMG00000163018.2 +50216 chr5 HAVANA gene 126360132 126496494 5051.0 + 0 ENSG00000155324.9 protein_coding GRAMD2B 2 OTTHUMG00000128943.8 overlapping_locus +50217 chr5 HAVANA gene 126496279 126498604 2326.0 + 0 ENSG00000279118.1 TEC AC093535.2 2 OTTHUMG00000173432.1 overlapping_locus +50218 chr5 HAVANA gene 126372477 126509021 2878.0 - 0 ENSG00000250602.6 antisense AC093535.1 2 OTTHUMG00000163123.2 +50219 chr5 ENSEMBL gene 126553302 126553402 101.0 - 0 ENSG00000202082.2 snRNA RNU6-290P 3 +50220 chr5 HAVANA gene 126531200 126595418 17970.0 - 0 ENSG00000164904.17 protein_coding ALDH7A1 1 OTTHUMG00000128942.26 ncRNA_host +50221 chr5 HAVANA gene 126600268 126627252 4319.0 + 0 ENSG00000164902.13 protein_coding PHAX 2 OTTHUMG00000163273.1 +50222 chr5 HAVANA gene 126628019 126628319 301.0 - 0 ENSG00000230929.5 processed_pseudogene AC099513.1 1 OTTHUMG00000157841.2 pseudo_consens +50223 chr5 HAVANA gene 126631722 126636287 476.0 + 0 ENSG00000196900.4 protein_coding TEX43 2 OTTHUMG00000128944.2 +50224 chr5 HAVANA gene 126663337 126663568 232.0 - 0 ENSG00000213630.3 processed_pseudogene BOLA3P3 1 OTTHUMG00000163033.1 pseudo_consens +50225 chr5 HAVANA gene 126737438 126737995 558.0 - 0 ENSG00000249768.2 processed_pseudogene HSPE1P10 2 OTTHUMG00000163036.2 +50226 chr5 ENSEMBL gene 126755316 126755417 102.0 - 0 ENSG00000252185.1 snRNA RNU6-752P 3 +50227 chr5 HAVANA gene 126751963 126776486 914.0 - 0 ENSG00000251072.2 lincRNA LMNB1-DT 1 OTTHUMG00000163029.3 ncRNA_host +50228 chr5 HAVANA gene 126776623 126837020 3633.0 + 0 ENSG00000113368.11 protein_coding LMNB1 2 OTTHUMG00000128969.7 +50229 chr5 HAVANA gene 126867714 127030808 5179.0 - 0 ENSG00000173926.5 protein_coding MARCH3 2 OTTHUMG00000128968.3 +50230 chr5 HAVANA gene 127042558 127073492 7190.0 - 0 ENSG00000164241.13 protein_coding C5orf63 2 OTTHUMG00000163037.3 +50231 chr5 HAVANA gene 127073587 127075604 2018.0 + 0 ENSG00000279446.1 TEC AC005915.1 2 OTTHUMG00000173469.1 +50232 chr5 HAVANA gene 127143082 127143247 166.0 - 0 ENSG00000214743.4 processed_pseudogene MRPS5P3 1 OTTHUMG00000163027.1 pseudo_consens +50233 chr5 HAVANA gene 127170535 127172266 1732.0 - 0 ENSG00000250080.1 processed_pseudogene AC011416.1 1 OTTHUMG00000163025.1 pseudo_consens +50234 chr5 HAVANA gene 127176696 127177050 355.0 - 0 ENSG00000271585.1 processed_pseudogene SELENOTP2 1 OTTHUMG00000184309.1 pseudo_consens +50235 chr5 HAVANA gene 127179756 127179900 145.0 - 0 ENSG00000250956.1 processed_pseudogene AC011416.2 1 OTTHUMG00000163030.1 pseudo_consens +50236 chr5 HAVANA gene 127215159 127229809 2321.0 - 0 ENSG00000283897.1 lincRNA AC011416.3 2 OTTHUMG00000192000.1 +50237 chr5 HAVANA gene 127290831 127465737 9007.0 + 0 ENSG00000145794.16 protein_coding MEGF10 1 OTTHUMG00000128984.3 +50238 chr5 HAVANA gene 127465822 127466118 297.0 + 0 ENSG00000249577.1 processed_pseudogene AC010424.1 1 OTTHUMG00000163053.1 pseudo_consens +50239 chr5 HAVANA gene 127478295 127478737 443.0 + 0 ENSG00000271766.1 lincRNA AC010424.2 2 OTTHUMG00000185557.1 +50240 chr5 HAVANA gene 127511464 127512842 1379.0 - 0 ENSG00000250859.1 processed_pseudogene HNRNPKP1 1 OTTHUMG00000163051.1 pseudo_consens +50241 chr5 HAVANA gene 127517609 127555089 9064.0 + 0 ENSG00000164244.20 protein_coding PRRC1 2 OTTHUMG00000128982.5 +50242 chr5 HAVANA gene 127588746 127590710 1745.0 - 0 ENSG00000282925.1 lincRNA AC010424.3 2 OTTHUMG00000191607.1 +50243 chr5 HAVANA gene 127649044 127658630 2105.0 + 0 ENSG00000205279.8 protein_coding CTXN3 2 OTTHUMG00000163285.1 +50244 chr5 HAVANA gene 127651693 127664029 547.0 - 0 ENSG00000248799.1 antisense AC022118.1 2 OTTHUMG00000163287.1 +50245 chr5 HAVANA gene 127784618 127787042 2425.0 - 0 ENSG00000251032.1 processed_pseudogene CUL1P1 1 OTTHUMG00000163286.2 pseudo_consens +50246 chr5 HAVANA gene 127838486 127857804 388.0 - 0 ENSG00000250603.1 lincRNA AC068658.1 1 OTTHUMG00000163283.1 +50247 chr5 HAVANA gene 127703389 127941634 1901.0 + 0 ENSG00000230561.4 protein_coding CCDC192 1 OTTHUMG00000163284.4 +50248 chr5 HAVANA gene 127940426 128083172 6464.0 - 0 ENSG00000245937.7 lincRNA LINC01184 1 OTTHUMG00000163312.3 +50249 chr5 HAVANA gene 128109486 128110994 1509.0 + 0 ENSG00000250329.1 processed_pseudogene KDELC1P1 1 OTTHUMG00000163270.1 pseudo_consens,overlapping_locus +50250 chr5 HAVANA gene 128083766 128189688 10664.0 + 0 ENSG00000064651.13 protein_coding SLC12A2 2 OTTHUMG00000128983.3 overlapping_locus +50251 chr5 ENSEMBL gene 128371099 128371212 114.0 - 0 ENSG00000207290.1 misc_RNA RF00019 3 +50252 chr5 HAVANA gene 128257909 128659185 13196.0 - 0 ENSG00000138829.11 protein_coding FBN2 1 OTTHUMG00000163082.2 ncRNA_host +50253 chr5 HAVANA gene 128663978 128742829 462.0 + 0 ENSG00000248634.1 sense_intronic AC008588.1 2 OTTHUMG00000163145.1 overlapping_locus +50254 chr5 HAVANA gene 128538013 129033642 3493.0 + 0 ENSG00000113396.12 protein_coding SLC27A6 2 OTTHUMG00000128991.3 overlapping_locus +50255 chr5 ENSEMBL gene 129097688 129097766 79.0 + 0 ENSG00000264563.1 miRNA MIR4633 3 +50256 chr5 HAVANA gene 129094751 129114028 1940.0 + 0 ENSG00000066583.11 protein_coding ISOC1 1 OTTHUMG00000163144.2 ncRNA_host +50257 chr5 ENSEMBL gene 129397062 129397147 86.0 - 0 ENSG00000265691.1 miRNA MIR4460 3 +50258 chr5 HAVANA gene 129459559 129460689 786.0 - 0 ENSG00000249421.1 antisense ADAMTS19-AS1 1 OTTHUMG00000163040.1 +50259 chr5 HAVANA gene 129460265 129738683 5408.0 + 0 ENSG00000145808.9 protein_coding ADAMTS19 2 OTTHUMG00000128990.3 +50260 chr5 HAVANA gene 129748079 129766732 2354.0 + 0 ENSG00000186367.6 protein_coding KIAA1024L 1 OTTHUMG00000163041.2 +50261 chr5 HAVANA gene 129500361 129905917 881.0 - 0 ENSG00000251680.5 antisense AC008591.1 2 OTTHUMG00000163042.1 +50262 chr5 ENSEMBL gene 129974891 129975001 111.0 + 0 ENSG00000221562.1 snRNA RNU6ATAC10P 3 +50263 chr5 ENSEMBL gene 130114409 130114510 102.0 + 0 ENSG00000199455.1 rRNA_pseudogene RNA5SP191 3 +50264 chr5 HAVANA gene 130140031 130141950 1920.0 + 0 ENSG00000248610.1 processed_pseudogene HSPA8P4 1 OTTHUMG00000163044.1 pseudo_consens,overlapping_locus +50265 chr5 HAVANA gene 129904472 130186634 3938.0 + 0 ENSG00000198108.3 protein_coding CHSY3 2 OTTHUMG00000163043.1 ncRNA_host,overlapping_locus +50266 chr5 ENSEMBL gene 130386621 130386680 60.0 - 0 ENSG00000252514.1 snRNA RNU7-53P 3 +50267 chr5 HAVANA gene 130529419 130529889 471.0 + 0 ENSG00000249312.1 processed_pseudogene ARL2BPP4 1 OTTHUMG00000163039.1 pseudo_consens +50268 chr5 HAVANA gene 130598348 130598779 432.0 + 0 ENSG00000249418.2 processed_pseudogene AC005741.1 1 OTTHUMG00000163038.2 pseudo_consens +50269 chr5 HAVANA gene 130989897 130990428 532.0 + 0 ENSG00000244192.1 processed_pseudogene AC113367.1 1 OTTHUMG00000157843.1 pseudo_consens +50270 chr5 HAVANA gene 130994253 130996164 1912.0 + 0 ENSG00000250405.2 processed_pseudogene AC113367.3 1 OTTHUMG00000163045.2 pseudo_consens +50271 chr5 HAVANA gene 131008583 131008742 160.0 + 0 ENSG00000248955.1 processed_pseudogene AC113367.2 2 OTTHUMG00000163046.1 +50272 chr5 HAVANA gene 131159027 131171735 1936.0 - 0 ENSG00000169567.11 protein_coding HINT1 1 OTTHUMG00000128995.5 +50273 chr5 HAVANA gene 131170810 131205426 6351.0 + 0 ENSG00000186687.15 protein_coding LYRM7 1 OTTHUMG00000128994.3 +50274 chr5 HAVANA gene 131261321 131261607 287.0 - 0 ENSG00000279370.1 TEC AC004777.1 2 OTTHUMG00000162693.1 +50275 chr5 HAVANA gene 131245493 131398447 6024.0 + 0 ENSG00000158985.13 protein_coding CDC42SE2 1 OTTHUMG00000162692.2 +50276 chr5 ENSEMBL gene 131440031 131440196 166.0 - 0 ENSG00000275939.1 misc_RNA RF02271 3 +50277 chr5 HAVANA gene 131423921 131635236 11125.0 - 0 ENSG00000158987.20 protein_coding RAPGEF6 1 OTTHUMG00000162683.6 ncRNA_host,overlapping_locus +50278 chr5 HAVANA gene 131425891 131796983 6393.0 - 0 ENSG00000273217.1 protein_coding AC008695.1 2 OTTHUMG00000162686.2 ncRNA_host,overlapping_locus +50279 chr5 HAVANA gene 131641714 131797063 7942.0 - 0 ENSG00000217128.11 protein_coding FNIP1 1 OTTHUMG00000186338.1 overlapping_locus +50280 chr5 HAVANA gene 131797415 131797929 515.0 + 0 ENSG00000279584.1 TEC AC005593.1 2 OTTHUMG00000162685.1 +50281 chr5 HAVANA gene 131806993 131945698 1671.0 - 0 ENSG00000239642.5 protein_coding MEIKIN 2 OTTHUMG00000059633.7 overlapping_locus +50282 chr5 HAVANA gene 131944408 131968220 562.0 + 0 ENSG00000234758.1 antisense AC034228.3 2 OTTHUMG00000059641.2 +50283 chr5 HAVANA gene 131807143 131994278 3126.0 - 0 ENSG00000281938.1 protein_coding AC026398.1 2 OTTHUMG00000191412.1 overlapping_locus +50284 chr5 HAVANA gene 132003592 132007022 923.0 + 0 ENSG00000223548.1 antisense AC034228.1 1 OTTHUMG00000059638.1 +50285 chr5 HAVANA gene 131949973 132012243 13013.0 - 0 ENSG00000164398.12 protein_coding ACSL6 1 OTTHUMG00000150692.6 overlapping_locus +50286 chr5 HAVANA gene 132011448 132013199 459.0 + 0 ENSG00000231585.1 antisense AC034228.2 1 OTTHUMG00000059635.1 +50287 chr5 HAVANA gene 132060529 132063204 1050.0 + 0 ENSG00000164399.4 protein_coding IL3 2 OTTHUMG00000059640.1 +50288 chr5 HAVANA gene 132073790 132076170 787.0 + 0 ENSG00000164400.5 protein_coding CSF2 2 OTTHUMG00000059637.3 +50289 chr5 ENSEMBL gene 132080066 132080133 68.0 + 0 ENSG00000253067.1 snoRNA RF00285 3 +50290 chr5 HAVANA gene 132147491 132149559 329.0 - 0 ENSG00000227616.1 unprocessed_pseudogene AC063976.3 2 OTTHUMG00000059636.1 +50291 chr5 HAVANA gene 132163603 132163765 163.0 - 0 ENSG00000235775.1 unprocessed_pseudogene AC063976.4 2 OTTHUMG00000059639.1 +50292 chr5 HAVANA gene 132179234 132181128 381.0 - 0 ENSG00000224015.1 lincRNA AC063976.1 1 OTTHUMG00000059642.1 +50293 chr5 HAVANA gene 132184876 132192808 839.0 + 0 ENSG00000237714.1 antisense P4HA2-AS1 1 OTTHUMG00000059643.1 +50294 chr5 HAVANA gene 132199456 132203487 3556.0 + 0 ENSG00000224431.1 processed_pseudogene AC063976.2 1 OTTHUMG00000099425.1 pseudo_consens +50295 chr5 ENSEMBL gene 132217849 132217918 70.0 - 0 ENSG00000283678.1 miRNA MIR6830 3 +50296 chr5 HAVANA gene 132257671 132273454 3192.0 + 0 ENSG00000131435.12 protein_coding PDLIM4 1 OTTHUMG00000059645.7 +50297 chr5 HAVANA gene 132191838 132295315 8502.0 - 0 ENSG00000072682.18 protein_coding P4HA2 1 OTTHUMG00000059647.11 ncRNA_host +50298 chr5 HAVANA gene 132294443 132344206 2688.0 + 0 ENSG00000197208.5 protein_coding SLC22A4 2 OTTHUMG00000059648.6 +50299 chr5 ENSEMBL gene 132365490 132365599 110.0 - 0 ENSG00000263597.1 miRNA MIR3936 3 +50300 chr5 HAVANA gene 132311285 132369916 2857.0 - 0 ENSG00000233006.7 processed_transcript MIR3936HG 2 OTTHUMG00000059646.5 ncRNA_host +50301 chr5 HAVANA gene 132369752 132395614 12788.0 + 0 ENSG00000197375.12 protein_coding SLC22A5 2 OTTHUMG00000059634.14 +50302 chr5 HAVANA gene 132419416 132426714 999.0 - 0 ENSG00000238160.1 antisense AC116366.2 1 OTTHUMG00000059494.1 +50303 chr5 ENSEMBL gene 132468147 132468257 111.0 + 0 ENSG00000202533.1 misc_RNA RF00019 3 +50304 chr5 HAVANA gene 132468890 132473043 3730.0 - 0 ENSG00000234290.2 antisense AC116366.1 1 OTTHUMG00000192152.1 +50305 chr5 HAVANA gene 132410636 132488702 9728.0 + 0 ENSG00000197536.11 processed_transcript C5orf56 1 OTTHUMG00000059493.7 ncRNA_host,overlapping_locus +50306 chr5 HAVANA gene 132481609 132490798 7799.0 - 0 ENSG00000125347.13 protein_coding IRF1 2 OTTHUMG00000059497.16 +50307 chr5 HAVANA gene 132541444 132556838 1587.0 - 0 ENSG00000113525.9 protein_coding IL5 2 OTTHUMG00000059496.5 +50308 chr5 HAVANA gene 132410832 132646079 8961.0 + 0 ENSG00000283782.2 protein_coding AC116366.3 2 OTTHUMG00000059495.4 ncRNA_host,overlapping_locus +50309 chr5 HAVANA gene 132556019 132646344 9771.0 + 0 ENSG00000113522.13 protein_coding RAD50 1 OTTHUMG00000059613.12 overlapping_locus +50310 chr5 HAVANA gene 132656263 132661110 2887.0 + 0 ENSG00000169194.9 protein_coding IL13 2 OTTHUMG00000059723.2 +50311 chr5 HAVANA gene 132630589 132664272 1081.0 - 0 ENSG00000223442.1 antisense TH2LCRR 2 OTTHUMG00000059612.2 +50312 chr5 HAVANA gene 132673986 132682676 818.0 + 0 ENSG00000113520.10 protein_coding IL4 1 OTTHUMG00000059724.4 +50313 chr5 HAVANA gene 132688681 132723725 1789.0 + 0 ENSG00000230612.3 antisense AC004039.1 2 OTTHUMG00000059736.2 +50314 chr5 HAVANA gene 132692628 132737638 6860.0 - 0 ENSG00000131437.15 protein_coding KIF3A 2 OTTHUMG00000059725.18 +50315 chr5 HAVANA gene 132747445 132754403 3162.0 + 0 ENSG00000205089.7 protein_coding CCNI2 1 OTTHUMG00000059737.1 +50316 chr5 HAVANA gene 132750817 132807241 7711.0 - 0 ENSG00000164402.13 protein_coding SEPT8 1 OTTHUMG00000059735.14 +50317 chr5 HAVANA gene 132813587 132816797 3211.0 + 0 ENSG00000198944.5 protein_coding SOWAHA 2 OTTHUMG00000059844.2 retrogene +50318 chr5 HAVANA gene 132817248 132818000 753.0 - 0 ENSG00000272203.1 lincRNA AC004775.1 2 OTTHUMG00000185560.1 +50319 chr5 HAVANA gene 132822141 132830898 4420.0 - 0 ENSG00000164403.14 protein_coding SHROOM1 2 OTTHUMG00000059835.5 +50320 chr5 ENSEMBL gene 132848577 132848696 120.0 + 0 ENSG00000201274.1 rRNA_pseudogene RNA5SP192 3 +50321 chr5 HAVANA gene 132861181 132866884 3279.0 - 0 ENSG00000164404.8 protein_coding GDF9 2 OTTHUMG00000059842.3 +50322 chr5 HAVANA gene 132866560 132868031 1472.0 + 0 ENSG00000164405.10 protein_coding UQCRQ 2 OTTHUMG00000059836.2 +50323 chr5 HAVANA gene 132872322 132875046 2405.0 + 0 ENSG00000164406.7 protein_coding LEAP2 2 OTTHUMG00000059837.1 +50324 chr5 HAVANA gene 132942932 132945050 1205.0 + 0 ENSG00000235253.1 processed_pseudogene AC010240.2 1 OTTHUMG00000059841.1 pseudo_consens +50325 chr5 ENSEMBL gene 132945342 132945454 113.0 + 0 ENSG00000202417.1 misc_RNA RF00019 3 +50326 chr5 HAVANA gene 132948493 132948718 226.0 + 0 ENSG00000225364.1 processed_pseudogene ATP6V0E1P1 1 OTTHUMG00000059840.1 pseudo_consens +50327 chr5 HAVANA gene 132875379 132963634 11297.0 - 0 ENSG00000072364.12 protein_coding AFF4 2 OTTHUMG00000059838.9 +50328 chr5 HAVANA gene 132963770 132964164 395.0 + 0 ENSG00000272023.1 lincRNA AC010240.3 2 OTTHUMG00000185561.1 +50329 chr5 HAVANA gene 132987652 132988110 459.0 - 0 ENSG00000229738.1 processed_pseudogene AC010240.1 1 OTTHUMG00000059843.1 pseudo_consens +50330 chr5 ENSEMBL gene 132993099 132993200 102.0 - 0 ENSG00000199677.1 misc_RNA RF00019 3 +50331 chr5 HAVANA gene 133003119 133003365 247.0 + 0 ENSG00000248648.1 processed_pseudogene AC113410.1 1 OTTHUMG00000162707.1 pseudo_consens +50332 chr5 HAVANA gene 132996985 133026604 2559.0 - 0 ENSG00000155329.11 protein_coding ZCCHC10 1 OTTHUMG00000129013.3 +50333 chr5 HAVANA gene 133052769 133052971 203.0 + 0 ENSG00000279691.1 TEC AC113410.3 2 OTTHUMG00000162708.1 overlapping_locus +50334 chr5 HAVANA gene 133051962 133106449 5153.0 + 0 ENSG00000170606.14 protein_coding HSPA4 2 OTTHUMG00000129012.2 overlapping_locus +50335 chr5 HAVANA gene 133111055 133114475 678.0 - 0 ENSG00000251616.1 lincRNA AC113410.2 2 OTTHUMG00000162706.1 +50336 chr5 HAVANA gene 133172218 133173053 836.0 - 0 ENSG00000240611.1 processed_pseudogene AC010307.1 1 OTTHUMG00000157845.1 pseudo_consens +50337 chr5 HAVANA gene 133160438 133224413 816.0 + 0 ENSG00000248245.1 antisense AC010307.2 2 OTTHUMG00000162705.2 +50338 chr5 HAVANA gene 133243764 133248781 3279.0 + 0 ENSG00000249478.1 antisense AC010307.3 2 OTTHUMG00000162728.1 +50339 chr5 HAVANA gene 133256492 133275977 416.0 + 0 ENSG00000250244.5 antisense AC010307.4 2 OTTHUMG00000162723.1 +50340 chr5 HAVANA gene 133387773 133388549 275.0 + 0 ENSG00000250409.1 antisense AC010608.1 2 OTTHUMG00000162725.1 +50341 chr5 ENSEMBL gene 133427596 133427706 111.0 - 0 ENSG00000221287.1 miRNA MIR1289-2 3 +50342 chr5 HAVANA gene 133457805 133458331 527.0 + 0 ENSG00000280104.1 TEC AC010608.3 2 OTTHUMG00000162724.1 +50343 chr5 HAVANA gene 133574829 133575298 470.0 - 0 ENSG00000279197.1 TEC AC010608.2 2 OTTHUMG00000162726.1 overlapping_locus +50344 chr5 HAVANA gene 133196455 133612564 6734.0 - 0 ENSG00000053108.16 protein_coding FSTL4 2 OTTHUMG00000162729.3 ncRNA_host,overlapping_locus +50345 chr5 HAVANA gene 133720495 133720934 440.0 - 0 ENSG00000251243.1 processed_pseudogene AC005178.1 1 OTTHUMG00000162727.1 pseudo_consens +50346 chr5 HAVANA gene 133913677 133917269 683.0 + 0 ENSG00000249073.1 lincRNA WSPAR 1 OTTHUMG00000163048.1 +50347 chr5 HAVANA gene 133955502 133968787 2422.0 - 0 ENSG00000113583.7 protein_coding C5orf15 2 OTTHUMG00000129125.3 +50348 chr5 HAVANA gene 133971915 134005133 3163.0 - 0 ENSG00000213585.10 protein_coding VDAC1 2 OTTHUMG00000129118.3 +50349 chr5 HAVANA gene 134005147 134005562 416.0 + 0 ENSG00000271737.1 lincRNA AC008608.2 2 OTTHUMG00000185563.1 +50350 chr5 HAVANA gene 134081914 134082040 127.0 - 0 ENSG00000271128.1 processed_pseudogene AC008608.1 1 OTTHUMG00000184312.1 pseudo_consens +50351 chr5 HAVANA gene 134114711 134151865 10063.0 + 0 ENSG00000081059.19 protein_coding TCF7 1 OTTHUMG00000129124.4 +50352 chr5 HAVANA gene 134148935 134177038 12771.0 - 0 ENSG00000113558.18 protein_coding SKP1 2 OTTHUMG00000129117.6 overlapping_locus +50353 chr5 ENSEMBL gene 134225757 134225852 96.0 + 0 ENSG00000266751.1 miRNA MIR3661 3 +50354 chr5 HAVANA gene 134167170 134226071 483.0 - 0 ENSG00000272772.1 protein_coding AC104109.3 2 OTTHUMG00000186510.2 overlapping_locus +50355 chr5 HAVANA gene 134194334 134226142 5661.0 - 0 ENSG00000113575.9 protein_coding PPP2CA 1 OTTHUMG00000129119.5 overlapping_locus +50356 chr5 HAVANA gene 134226410 134227827 1418.0 + 0 ENSG00000270177.1 lincRNA AC104109.2 2 OTTHUMG00000184010.1 +50357 chr5 HAVANA gene 134267421 134267856 436.0 + 0 ENSG00000239615.1 processed_pseudogene AC104109.1 1 OTTHUMG00000157848.1 pseudo_consens +50358 chr5 HAVANA gene 134205614 134371044 1745.0 - 0 ENSG00000273345.5 processed_transcript AC104109.4 2 OTTHUMG00000164185.1 overlapping_locus +50359 chr5 HAVANA gene 134286350 134371047 3057.0 - 0 ENSG00000006837.11 protein_coding CDKL3 1 OTTHUMG00000186341.2 overlapping_locus +50360 chr5 HAVANA gene 134371179 134391992 3291.0 + 0 ENSG00000119048.7 protein_coding UBE2B 2 OTTHUMG00000129120.2 +50361 chr5 HAVANA gene 134394360 134395008 649.0 - 0 ENSG00000279469.1 TEC AC109454.4 2 OTTHUMG00000163067.1 +50362 chr5 HAVANA gene 134399495 134401921 520.0 + 0 ENSG00000248559.1 antisense AC109454.2 1 OTTHUMG00000163068.1 +50363 chr5 HAVANA gene 134402087 134411898 1757.0 - 0 ENSG00000237190.3 protein_coding CDKN2AIPNL 2 OTTHUMG00000129123.2 +50364 chr5 HAVANA gene 134422838 134423335 498.0 + 0 ENSG00000243648.1 processed_pseudogene AC109454.1 1 OTTHUMG00000157849.1 pseudo_consens +50365 chr5 HAVANA gene 134429051 134460615 669.0 - 0 ENSG00000250564.1 lincRNA AC109454.3 2 OTTHUMG00000163076.1 +50366 chr5 HAVANA gene 134436711 134492519 714.0 + 0 ENSG00000250994.1 lincRNA AC005355.1 2 OTTHUMG00000163069.1 +50367 chr5 ENSEMBL gene 134500178 134500284 107.0 - 0 ENSG00000207222.1 snRNA RNU6-456P 3 +50368 chr5 HAVANA gene 134506552 134509229 1107.0 + 0 ENSG00000251169.2 lincRNA LINC01843 1 OTTHUMG00000163059.2 +50369 chr5 ENSEMBL gene 134517810 134518092 283.0 + 0 ENSG00000240250.3 misc_RNA RN7SL541P 3 +50370 chr5 HAVANA gene 134522613 134523096 484.0 - 0 ENSG00000280420.1 TEC AC005355.2 2 OTTHUMG00000163058.1 +50371 chr5 HAVANA gene 134524312 134583230 9877.0 + 0 ENSG00000043143.20 protein_coding JADE2 1 OTTHUMG00000129122.5 +50372 chr5 ENSEMBL gene 134634839 134634945 107.0 - 0 ENSG00000207459.1 snRNA RNU6-1311P 3 +50373 chr5 HAVANA gene 134601144 134649271 10963.0 - 0 ENSG00000152700.13 protein_coding SAR1B 2 OTTHUMG00000129114.3 ncRNA_host +50374 chr5 ENSEMBL gene 134701172 134701278 107.0 - 0 ENSG00000201298.1 snRNA RNU6-1164P 3 +50375 chr5 ENSEMBL gene 134715483 134715582 100.0 + 0 ENSG00000222266.1 snRNA RNU6-757P 3 +50376 chr5 HAVANA gene 134648789 134727823 7201.0 + 0 ENSG00000113615.12 protein_coding SEC24A 2 OTTHUMG00000163064.1 ncRNA_host +50377 chr5 HAVANA gene 134738501 134752160 2221.0 + 0 ENSG00000164615.4 protein_coding CAMLG 1 OTTHUMG00000129116.3 +50378 chr5 HAVANA gene 134804778 134805132 355.0 - 0 ENSG00000241179.1 processed_pseudogene AC010301.1 1 OTTHUMG00000157852.1 pseudo_consens +50379 chr5 HAVANA gene 134758771 134855133 9222.0 + 0 ENSG00000145833.15 protein_coding DDX46 2 OTTHUMG00000163072.1 overlapping_locus +50380 chr5 HAVANA gene 134845680 134859737 5741.0 + 0 ENSG00000181904.8 protein_coding C5orf24 1 OTTHUMG00000129121.4 overlapping_locus +50381 chr5 HAVANA gene 134863091 134863433 343.0 - 0 ENSG00000270892.1 processed_pseudogene AC006077.1 1 OTTHUMG00000184320.1 pseudo_consens +50382 chr5 HAVANA gene 134873803 134901525 5265.0 + 0 ENSG00000113621.14 protein_coding TXNDC15 1 OTTHUMG00000129115.4 +50383 chr5 HAVANA gene 134905235 134905691 457.0 + 0 ENSG00000279799.1 TEC AC006077.2 2 OTTHUMG00000163060.1 overlapping_locus +50384 chr5 HAVANA gene 134923303 134924049 747.0 - 0 ENSG00000244921.2 processed_pseudogene MTCYBP18 2 OTTHUMG00000163073.1 +50385 chr5 HAVANA gene 134924123 134924644 522.0 + 0 ENSG00000249119.1 processed_pseudogene MTND6P4 2 OTTHUMG00000163065.1 overlapping_locus +50386 chr5 HAVANA gene 134924648 134926459 1812.0 - 0 ENSG00000248923.1 processed_pseudogene MTND5P11 2 OTTHUMG00000163063.1 +50387 chr5 HAVANA gene 134926660 134928036 1377.0 - 0 ENSG00000247627.2 processed_pseudogene MTND4P12 2 OTTHUMG00000163066.1 overlapping_locus +50388 chr5 ENSEMBL gene 134928039 134928112 74.0 + 0 ENSG00000263963.1 miRNA MIR4461 3 +50389 chr5 HAVANA gene 134928030 134928326 297.0 - 0 ENSG00000198868.3 processed_pseudogene MTND4LP30 2 OTTHUMG00000163074.1 overlapping_locus +50390 chr5 HAVANA gene 134928393 134928527 135.0 - 0 ENSG00000249192.1 processed_pseudogene MTND3P25 2 OTTHUMG00000163071.1 +50391 chr5 HAVANA gene 134904906 135007959 7171.0 + 0 ENSG00000132570.14 protein_coding PCBD2 2 OTTHUMG00000163070.1 ncRNA_host,overlapping_locus +50392 chr5 HAVANA gene 134967906 135011707 1581.0 + 0 ENSG00000152705.7 protein_coding CATSPER3 2 OTTHUMG00000129137.3 overlapping_locus +50393 chr5 HAVANA gene 135027735 135034813 3511.0 - 0 ENSG00000069011.15 protein_coding PITX1 2 OTTHUMG00000149983.5 +50394 chr5 HAVANA gene 135034521 135035894 1374.0 + 0 ENSG00000277619.1 antisense AC008406.3 2 OTTHUMG00000187902.1 overlapping_locus +50395 chr5 HAVANA gene 135038831 135040047 843.0 - 0 ENSG00000249082.2 lincRNA C5orf66-AS1 2 OTTHUMG00000163077.2 +50396 chr5 HAVANA gene 135124380 135131249 541.0 - 0 ENSG00000248482.1 lincRNA AC008406.1 2 OTTHUMG00000163061.1 +50397 chr5 HAVANA gene 135120526 135139681 532.0 + 0 ENSG00000248753.1 lincRNA AC008406.2 2 OTTHUMG00000163062.1 overlapping_locus +50398 chr5 HAVANA gene 135236234 135248179 2451.0 - 0 ENSG00000249647.2 lincRNA C5orf66-AS2 1 OTTHUMG00000163309.2 +50399 chr5 HAVANA gene 135033280 135358219 6650.0 + 0 ENSG00000224186.8 antisense C5orf66 1 OTTHUMG00000163075.3 overlapping_locus +50400 chr5 HAVANA gene 135333900 135399914 17730.0 - 0 ENSG00000113648.16 protein_coding H2AFY 1 OTTHUMG00000129141.3 +50401 chr5 HAVANA gene 135399280 135401296 2017.0 + 0 ENSG00000270021.1 antisense AC026691.1 2 OTTHUMG00000171136.2 +50402 chr5 HAVANA gene 135444214 135447348 3135.0 - 0 ENSG00000251380.3 protein_coding DCANP1 2 OTTHUMG00000163308.1 overlapping_locus +50403 chr5 HAVANA gene 135444218 135452399 5923.0 - 0 ENSG00000255833.1 protein_coding TIFAB 2 OTTHUMG00000129140.2 overlapping_locus +50404 chr5 HAVANA gene 135450613 135458697 504.0 + 0 ENSG00000249639.1 antisense AC022092.1 2 OTTHUMG00000163110.1 +50405 chr5 HAVANA gene 135534282 135535949 1668.0 - 0 ENSG00000181965.5 protein_coding NEUROG1 2 OTTHUMG00000129138.1 +50406 chr5 HAVANA gene 135570679 135579279 1975.0 - 0 ENSG00000145824.12 protein_coding CXCL14 2 OTTHUMG00000129139.4 +50407 chr5 HAVANA gene 135559577 135634874 887.0 + 0 ENSG00000250167.1 antisense AC034206.1 2 OTTHUMG00000163105.2 +50408 chr5 HAVANA gene 135648584 135653935 2141.0 - 0 ENSG00000251045.1 lincRNA LINC01959 2 OTTHUMG00000163111.2 +50409 chr5 HAVANA gene 135742462 135746356 230.0 - 0 ENSG00000223539.4 unprocessed_pseudogene AC011431.1 2 OTTHUMG00000163108.2 +50410 chr5 ENSEMBL gene 135802985 135803075 91.0 - 0 ENSG00000265924.1 miRNA MIR5692C1 3 +50411 chr5 HAVANA gene 135812667 135827546 2791.0 + 0 ENSG00000250378.3 processed_transcript AC114296.1 1 OTTHUMG00000163102.4 overlapping_locus +50412 chr5 HAVANA gene 135579202 135889770 8371.0 + 0 ENSG00000145832.14 protein_coding SLC25A48 1 OTTHUMG00000157007.5 overlapping_locus +50413 chr5 HAVANA gene 135892246 135895827 591.0 - 0 ENSG00000145839.1 protein_coding IL9 2 OTTHUMG00000129147.1 +50414 chr5 HAVANA gene 135897637 135900250 414.0 + 0 ENSG00000254239.1 lincRNA AC002428.2 1 OTTHUMG00000165055.2 +50415 chr5 HAVANA gene 135900353 135918161 771.0 - 0 ENSG00000253927.1 lincRNA AC002428.1 2 OTTHUMG00000165056.1 +50416 chr5 HAVANA gene 135930317 135951591 3872.0 + 0 ENSG00000164616.16 transcribed_unitary_pseudogene FBXL21 2 OTTHUMG00000155971.5 +50417 chr5 HAVANA gene 135922279 135955034 2175.0 - 0 ENSG00000145826.8 protein_coding LECT2 1 OTTHUMG00000129146.4 +50418 chr5 HAVANA gene 136028895 136063818 7810.0 + 0 ENSG00000120708.16 protein_coding TGFBI 1 OTTHUMG00000163213.4 +50419 chr5 ENSEMBL gene 136080497 136080597 101.0 - 0 ENSG00000278815.1 misc_RNA RF00006 3 +50420 chr5 HAVANA gene 136080470 136080597 128.0 - 0 ENSG00000270123.4 vaultRNA VTRNA2-1 2 OTTHUMG00000183992.2 +50421 chr5 ENSEMBL gene 136129516 136129781 266.0 + 0 ENSG00000277859.1 misc_RNA RF02173 3 +50422 chr5 ENSEMBL gene 136133696 136133826 131.0 + 0 ENSG00000275646.1 misc_RNA RF02174 3 +50423 chr5 ENSEMBL gene 136133912 136134035 124.0 + 0 ENSG00000277524.1 misc_RNA RF02175 3 +50424 chr5 ENSEMBL gene 136134082 136134248 167.0 + 0 ENSG00000274934.1 misc_RNA RF02176 3 +50425 chr5 HAVANA gene 136129507 136134890 1816.0 - 0 ENSG00000164621.5 antisense SMAD5-AS1 2 OTTHUMG00000163216.1 +50426 chr5 HAVANA gene 136132845 136188747 8779.0 + 0 ENSG00000113658.17 protein_coding SMAD5 2 OTTHUMG00000163212.7 ncRNA_host +50427 chr5 HAVANA gene 136191468 136193134 1667.0 - 0 ENSG00000271824.1 protein_coding SMIM32 2 OTTHUMG00000185564.2 +50428 chr5 HAVANA gene 136214048 136222159 460.0 + 0 ENSG00000248211.1 antisense TRPC7-AS1 2 OTTHUMG00000162034.1 +50429 chr5 HAVANA gene 136303757 136316100 706.0 + 0 ENSG00000250947.1 antisense TRPC7-AS2 1 OTTHUMG00000162036.1 +50430 chr5 HAVANA gene 136213320 136365545 3193.0 - 0 ENSG00000069018.18 protein_coding TRPC7 1 OTTHUMG00000189265.4 +50431 chr5 HAVANA gene 136381268 136381511 244.0 - 0 ENSG00000248351.1 processed_pseudogene HSPD1P18 1 OTTHUMG00000163218.1 pseudo_consens,overlapping_locus +50432 chr5 HAVANA gene 136376348 136397042 414.0 - 0 ENSG00000279240.1 lincRNA AC063980.1 1 OTTHUMG00000162035.4 +50433 chr5 HAVANA gene 136428892 136429854 963.0 + 0 ENSG00000213568.4 processed_pseudogene HNRNPA1P13 1 OTTHUMG00000163217.1 pseudo_consens +50434 chr5 HAVANA gene 136466677 136520298 800.0 + 0 ENSG00000249803.5 lincRNA AC112178.1 1 OTTHUMG00000163214.1 +50435 chr5 HAVANA gene 136734927 136763409 1786.0 + 0 ENSG00000250284.2 lincRNA AC109439.2 2 OTTHUMG00000163215.3 +50436 chr5 HAVANA gene 136857628 136858342 715.0 + 0 ENSG00000248616.1 processed_pseudogene AC109439.1 1 OTTHUMG00000163219.2 pseudo_consens +50437 chr5 ENSEMBL gene 136969200 136969306 107.0 - 0 ENSG00000222285.1 rRNA_pseudogene RNA5SP193 3 +50438 chr5 HAVANA gene 136975298 137598379 6222.0 - 0 ENSG00000152377.13 protein_coding SPOCK1 2 OTTHUMG00000129157.6 +50439 chr5 ENSEMBL gene 137647572 137647649 78.0 - 0 ENSG00000216009.3 miRNA MIR874 3 +50440 chr5 HAVANA gene 137617500 137736090 11854.0 - 0 ENSG00000146021.14 protein_coding KLHL3 1 OTTHUMG00000129155.13 ncRNA_host +50441 chr5 HAVANA gene 137745651 137754376 8726.0 - 0 ENSG00000177733.6 protein_coding HNRNPA0 2 OTTHUMG00000129156.2 retrogene +50442 chr5 HAVANA gene 137761546 137761936 391.0 + 0 ENSG00000270697.1 lincRNA AC106791.2 2 OTTHUMG00000184240.1 +50443 chr5 HAVANA gene 137801193 137810751 2988.0 + 0 ENSG00000226306.6 transcribed_processed_pseudogene NPY6R 2 OTTHUMG00000163236.2 +50444 chr5 HAVANA gene 137867791 137887851 2893.0 + 0 ENSG00000120729.9 protein_coding MYOT 1 OTTHUMG00000129154.5 +50445 chr5 HAVANA gene 137814333 137889336 1675.0 - 0 ENSG00000250159.6 antisense AC106791.1 2 OTTHUMG00000163307.2 +50446 chr5 HAVANA gene 137887968 137942747 4653.0 + 0 ENSG00000078795.16 protein_coding PKD2L2 1 OTTHUMG00000163306.5 +50447 chr5 HAVANA gene 138032774 138037266 1253.0 + 0 ENSG00000246323.2 antisense AC113382.1 2 OTTHUMG00000163222.1 +50448 chr5 HAVANA gene 138039199 138039979 646.0 + 0 ENSG00000250260.1 lincRNA AC113382.2 2 OTTHUMG00000163223.1 +50449 chr5 HAVANA gene 137937960 138051961 6808.0 - 0 ENSG00000031003.10 protein_coding FAM13B 2 OTTHUMG00000129202.8 +50450 chr5 ENSEMBL gene 138069355 138069458 104.0 - 0 ENSG00000222924.1 snRNA RNU6-1148P 3 +50451 chr5 HAVANA gene 138083892 138092365 2089.0 + 0 ENSG00000061492.11 protein_coding WNT8A 2 OTTHUMG00000129196.6 +50452 chr5 ENSEMBL gene 138116573 138116680 108.0 + 0 ENSG00000212460.1 snRNA RNU6-460P 3 +50453 chr5 ENSEMBL gene 138123011 138123111 101.0 - 0 ENSG00000199880.1 snRNA RNU6-888P 3 +50454 chr5 HAVANA gene 138115172 138139443 2392.0 - 0 ENSG00000112981.4 protein_coding NME5 2 OTTHUMG00000129207.3 ncRNA_host +50455 chr5 HAVANA gene 138139766 138178986 7046.0 - 0 ENSG00000112983.17 protein_coding BRD8 1 OTTHUMG00000129204.7 +50456 chr5 HAVANA gene 138178719 138187715 3958.0 + 0 ENSG00000112984.11 protein_coding KIF20A 2 OTTHUMG00000129195.3 +50457 chr5 HAVANA gene 138187648 138213343 4618.0 - 0 ENSG00000094880.10 protein_coding CDC23 1 OTTHUMG00000129198.6 +50458 chr5 HAVANA gene 138266996 138267757 459.0 - 0 ENSG00000249851.1 processed_pseudogene RPS27AP18 1 OTTHUMG00000163470.1 pseudo_consens,overlapping_locus +50459 chr5 HAVANA gene 138252379 138274671 2039.0 - 0 ENSG00000146013.10 protein_coding GFRA3 2 OTTHUMG00000129200.2 overlapping_locus +50460 chr5 HAVANA gene 138285265 138338355 3047.0 - 0 ENSG00000158402.19 protein_coding CDC25C 1 OTTHUMG00000129203.5 +50461 chr5 HAVANA gene 138347027 138349641 411.0 - 0 ENSG00000249971.1 antisense AC104116.1 2 OTTHUMG00000163471.1 +50462 chr5 HAVANA gene 138331935 138349729 7051.0 + 0 ENSG00000120709.10 protein_coding FAM53C 2 OTTHUMG00000129201.4 +50463 chr5 HAVANA gene 138352596 138437028 7961.0 + 0 ENSG00000120733.13 protein_coding KDM3B 2 OTTHUMG00000163469.1 +50464 chr5 HAVANA gene 138439017 138446969 3284.0 + 0 ENSG00000132563.15 protein_coding REEP2 1 OTTHUMG00000129205.5 +50465 chr5 HAVANA gene 138454540 138454732 193.0 - 0 ENSG00000271196.1 processed_pseudogene AC113403.1 1 OTTHUMG00000184358.1 pseudo_consens +50466 chr5 HAVANA gene 138465490 138469315 3138.0 + 0 ENSG00000120738.7 protein_coding EGR1 2 OTTHUMG00000129197.2 +50467 chr5 HAVANA gene 138473744 138474361 618.0 + 0 ENSG00000241458.1 processed_pseudogene RPL7P19 1 OTTHUMG00000157864.1 pseudo_consens +50468 chr5 HAVANA gene 138506095 138543300 4601.0 - 0 ENSG00000120705.12 protein_coding ETF1 1 OTTHUMG00000129199.5 +50469 chr5 ENSEMBL gene 138558970 138559039 70.0 - 0 ENSG00000222937.1 snoRNA RF00154 3 +50470 chr5 ENSEMBL gene 138561043 138561110 68.0 - 0 ENSG00000206989.1 snoRNA SNORD63 3 +50471 chr5 HAVANA gene 138553756 138575724 8254.0 - 0 ENSG00000113013.13 protein_coding HSPA9 2 OTTHUMG00000129206.5 ncRNA_host +50472 chr5 HAVANA gene 138620329 138620964 636.0 + 0 ENSG00000232174.3 processed_pseudogene AC113340.1 1 OTTHUMG00000157865.1 pseudo_consens,overlapping_locus +50473 chr5 ENSEMBL gene 138623479 138623582 104.0 + 0 ENSG00000238745.1 snoRNA RF01210 3 +50474 chr5 HAVANA gene 138744434 138753309 587.0 - 0 ENSG00000253404.1 antisense AC034243.1 2 OTTHUMG00000163503.1 +50475 chr5 HAVANA gene 138868923 138875368 6095.0 - 0 ENSG00000146006.7 protein_coding LRRTM2 1 OTTHUMG00000163535.3 +50476 chr5 HAVANA gene 138610967 138935034 8830.0 + 0 ENSG00000044115.20 protein_coding CTNNA1 1 OTTHUMG00000163502.4 ncRNA_host,overlapping_locus +50477 chr5 ENSEMBL gene 139012329 139012441 113.0 + 0 ENSG00000285956.1 rRNA_pseudogene AC011405.2 3 +50478 chr5 ENSEMBL gene 139012329 139012441 113.0 + 0 ENSG00000201532.1 rRNA RNA5SP194 3 +50479 chr5 HAVANA gene 139035148 139035987 518.0 - 0 ENSG00000242683.1 processed_pseudogene RPL12P21 1 OTTHUMG00000157868.1 pseudo_consens,overlapping_locus +50480 chr5 HAVANA gene 139012647 139051203 2380.0 + 0 ENSG00000249593.6 antisense AC011405.1 2 OTTHUMG00000163387.2 +50481 chr5 ENSEMBL gene 139221758 139221837 80.0 + 0 ENSG00000252533.1 snRNA RNU6-572P 3 +50482 chr5 ENSEMBL gene 139276180 139276320 141.0 + 0 ENSG00000252213.1 snoRNA SNORA74D 3 +50483 chr5 ENSEMBL gene 139278781 139278978 198.0 + 0 ENSG00000200959.1 snoRNA SNORA74A 3 +50484 chr5 HAVANA gene 139274102 139284899 4469.0 + 0 ENSG00000281398.4 lincRNA SNHG4 2 OTTHUMG00000189582.3 ncRNA_host,overlapping_locus +50485 chr5 HAVANA gene 138946720 139293557 4011.0 - 0 ENSG00000120725.12 protein_coding SIL1 2 OTTHUMG00000129226.3 overlapping_locus +50486 chr5 ENSEMBL gene 139299852 139299968 117.0 + 0 ENSG00000199545.1 rRNA_pseudogene RNA5SP195 3 +50487 chr5 HAVANA gene 139273752 139331671 6355.0 + 0 ENSG00000280987.4 protein_coding MATR3 2 OTTHUMG00000189583.4 ncRNA_host,overlapping_locus +50488 chr5 HAVANA gene 139293648 139331677 12090.0 + 0 ENSG00000015479.18 protein_coding MATR3 1 OTTHUMG00000129229.6 overlapping_locus +50489 chr5 ENSEMBL gene 139333038 139333365 328.0 - 0 ENSG00000253015.1 misc_RNA RN7SKP64 3 +50490 chr5 HAVANA gene 139364677 139369717 664.0 - 0 ENSG00000272742.1 antisense AC135457.1 2 OTTHUMG00000186242.1 overlapping_locus +50491 chr5 HAVANA gene 139341587 139369720 3158.0 + 0 ENSG00000120727.12 protein_coding PAIP2 1 OTTHUMG00000129227.5 +50492 chr5 HAVANA gene 139367196 139384553 3203.0 - 0 ENSG00000170482.16 protein_coding SLC23A1 2 OTTHUMG00000129228.5 overlapping_locus +50493 chr5 HAVANA gene 139387480 139390081 2273.0 - 0 ENSG00000170476.15 protein_coding MZB1 1 OTTHUMG00000163390.1 +50494 chr5 HAVANA gene 139390592 139395713 5122.0 - 0 ENSG00000228672.3 protein_coding PROB1 2 OTTHUMG00000185568.1 +50495 chr5 HAVANA gene 139396563 139404088 1204.0 - 0 ENSG00000170469.10 protein_coding SPATA24 2 OTTHUMG00000163388.3 +50496 chr5 HAVANA gene 139408588 139444491 6499.0 - 0 ENSG00000170464.9 protein_coding DNAJC18 1 OTTHUMG00000129225.5 overlapping_locus +50497 chr5 ENSEMBL gene 139447907 139448017 111.0 + 0 ENSG00000200378.1 snRNA RNU5B-4P 3 +50498 chr5 HAVANA gene 139442316 139462707 1002.0 - 0 ENSG00000279686.1 protein_coding AC142391.1 2 OTTHUMG00000189234.1 overlapping_locus +50499 chr5 HAVANA gene 139448556 139462743 1035.0 - 0 ENSG00000249751.3 protein_coding ECSCR 2 OTTHUMG00000163240.3 overlapping_locus +50500 chr5 HAVANA gene 139470778 139474772 2594.0 + 0 ENSG00000283288.1 protein_coding SMIM33 2 OTTHUMG00000191731.1 +50501 chr5 HAVANA gene 139475534 139482935 3850.0 - 0 ENSG00000184584.12 protein_coding TMEM173 1 OTTHUMG00000129239.8 +50502 chr5 HAVANA gene 139492538 139493105 568.0 + 0 ENSG00000249689.1 processed_pseudogene AC138517.1 1 OTTHUMG00000163241.1 pseudo_consens +50503 chr5 HAVANA gene 139494256 139496116 1861.0 + 0 ENSG00000249215.1 processed_pseudogene NCOA4P4 1 OTTHUMG00000163242.1 pseudo_consens +50504 chr5 ENSEMBL gene 139554900 139555001 102.0 - 0 ENSG00000207020.1 misc_RNA RF00019 3 +50505 chr5 HAVANA gene 139612002 139612363 362.0 - 0 ENSG00000275506.1 processed_pseudogene AC010378.1 1 OTTHUMG00000187602.1 pseudo_consens +50506 chr5 HAVANA gene 139526431 139628433 3556.0 + 0 ENSG00000131508.15 protein_coding UBE2D2 2 OTTHUMG00000163282.5 +50507 chr5 HAVANA gene 139644460 139645002 543.0 - 0 ENSG00000272255.1 lincRNA AC113361.1 2 OTTHUMG00000185579.1 +50508 chr5 HAVANA gene 139648999 139649728 577.0 - 0 ENSG00000250635.1 lincRNA CXXC5-AS1 2 OTTHUMG00000163330.1 +50509 chr5 HAVANA gene 139647299 139683882 3852.0 + 0 ENSG00000171604.11 protein_coding CXXC5 2 OTTHUMG00000163331.4 +50510 chr5 ENSEMBL gene 139717985 139718090 106.0 - 0 ENSG00000200756.1 snRNA RNU6-236P 3 +50511 chr5 HAVANA gene 139684645 139745010 568.0 + 0 ENSG00000249526.1 lincRNA AC008667.1 2 OTTHUMG00000163333.1 +50512 chr5 HAVANA gene 139741349 139746223 412.0 - 0 ENSG00000249131.1 lincRNA PSD2-AS1 2 OTTHUMG00000163335.2 +50513 chr5 HAVANA gene 139772528 139775406 553.0 - 0 ENSG00000251387.1 lincRNA AC008667.3 2 OTTHUMG00000163334.1 +50514 chr5 HAVANA gene 139775305 139775472 168.0 + 0 ENSG00000271792.1 lincRNA AC008667.4 2 OTTHUMG00000185580.1 +50515 chr5 HAVANA gene 139795821 139844466 4513.0 + 0 ENSG00000146005.3 protein_coding PSD2 2 OTTHUMG00000129240.1 +50516 chr5 HAVANA gene 139848290 139856389 469.0 + 0 ENSG00000250692.1 antisense AC008667.2 2 OTTHUMG00000163348.1 +50517 chr5 ENSEMBL gene 140019492 140019592 101.0 + 0 ENSG00000207317.1 misc_RNA RF00019 3 +50518 chr5 HAVANA gene 139846779 140043299 4520.0 - 0 ENSG00000158458.19 protein_coding NRG2 2 OTTHUMG00000129241.7 +50519 chr5 HAVANA gene 140072857 140108630 3439.0 - 0 ENSG00000245146.6 antisense MALINC1 2 OTTHUMG00000163537.2 +50520 chr5 HAVANA gene 140107777 140125619 12185.0 + 0 ENSG00000185129.5 protein_coding PURA 1 OTTHUMG00000129242.3 +50521 chr5 HAVANA gene 140125935 140129392 3458.0 + 0 ENSG00000182700.4 protein_coding IGIP 2 OTTHUMG00000163359.1 +50522 chr5 HAVANA gene 140157319 140173051 6140.0 + 0 ENSG00000254363.6 processed_transcript AC011379.2 2 OTTHUMG00000163536.2 +50523 chr5 HAVANA gene 140200163 140203187 3025.0 + 0 ENSG00000250069.1 sense_intronic AC011379.1 2 OTTHUMG00000163412.1 overlapping_locus +50524 chr5 HAVANA gene 140174642 140282052 2371.0 + 0 ENSG00000120306.10 protein_coding CYSTM1 1 OTTHUMG00000129243.5 overlapping_locus +50525 chr5 HAVANA gene 140245039 140303121 2156.0 - 0 ENSG00000113068.9 protein_coding PFDN1 2 OTTHUMG00000129249.4 +50526 chr5 HAVANA gene 140332843 140346631 3018.0 - 0 ENSG00000113070.7 protein_coding HBEGF 2 OTTHUMG00000129496.4 +50527 chr5 HAVANA gene 140348484 140357794 570.0 - 0 ENSG00000253965.1 antisense AC008438.2 2 OTTHUMG00000163574.1 +50528 chr5 HAVANA gene 140360202 140375143 3635.0 + 0 ENSG00000113073.14 protein_coding SLC4A9 2 OTTHUMG00000163352.3 +50529 chr5 ENSEMBL gene 140397323 140397444 122.0 - 0 ENSG00000222790.1 snRNA RNU4-14P 3 +50530 chr5 HAVANA gene 140370891 140401367 549.0 - 0 ENSG00000249637.1 antisense AC008438.1 1 OTTHUMG00000163370.1 ncRNA_host +50531 chr5 ENSEMBL gene 140527352 140527428 77.0 - 0 ENSG00000200051.1 snoRNA RF00279 3 +50532 chr5 HAVANA gene 140401814 140539856 11124.0 + 0 ENSG00000131503.20 protein_coding ANKHD1 1 OTTHUMG00000161610.3 overlapping_locus +50533 chr5 HAVANA gene 140401908 140549569 11385.0 + 0 ENSG00000254996.5 protein_coding ANKHD1-EIF4EBP3 2 OTTHUMG00000166212.1 overlapping_locus +50534 chr5 HAVANA gene 140547666 140549578 691.0 + 0 ENSG00000243056.1 protein_coding EIF4EBP3 2 OTTHUMG00000129498.2 overlapping_locus +50535 chr5 HAVANA gene 140537340 140558252 3396.0 - 0 ENSG00000213523.10 protein_coding SRA1 1 OTTHUMG00000163569.4 overlapping_locus +50536 chr5 ENSEMBL gene 140563671 140563751 81.0 - 0 ENSG00000283717.1 miRNA MIR6831 3 +50537 chr5 HAVANA gene 140558268 140564781 3660.0 - 0 ENSG00000113108.19 protein_coding APBB3 1 OTTHUMG00000191657.1 ncRNA_host,overlapping_locus +50538 chr5 HAVANA gene 140564456 140569103 4023.0 + 0 ENSG00000176087.14 protein_coding SLC35A4 2 OTTHUMG00000129495.5 +50539 chr5 ENSEMBL gene 140579667 140579792 126.0 + 0 ENSG00000200235.1 snoRNA RF00443 3 +50540 chr5 HAVANA gene 140581504 140582335 832.0 + 0 ENSG00000251453.1 processed_pseudogene HAUS1P1 1 OTTHUMG00000163364.1 pseudo_consens +50541 chr5 HAVANA gene 140562443 140592123 1108.0 - 0 ENSG00000283155.1 processed_transcript AC116353.4 2 OTTHUMG00000129504.7 ncRNA_host,overlapping_locus +50542 chr5 HAVANA gene 140569962 140594570 2089.0 - 0 ENSG00000283602.1 transcribed_unitary_pseudogene AC116353.5 2 OTTHUMG00000191771.1 overlapping_locus +50543 chr5 HAVANA gene 140609085 140609400 316.0 + 0 ENSG00000240518.2 processed_pseudogene AC116353.1 2 OTTHUMG00000157871.2 +50544 chr5 HAVANA gene 140631728 140633701 1886.0 - 0 ENSG00000170458.13 protein_coding CD14 1 OTTHUMG00000129507.4 +50545 chr5 HAVANA gene 140639427 140645408 3502.0 + 0 ENSG00000113119.12 protein_coding TMCO6 1 OTTHUMG00000129497.6 +50546 chr5 HAVANA gene 140638740 140647785 1488.0 - 0 ENSG00000131495.8 protein_coding NDUFA2 1 OTTHUMG00000129505.2 +50547 chr5 ENSEMBL gene 140647844 140647926 83.0 + 0 ENSG00000284325.1 miRNA MIR3655 3 +50548 chr5 HAVANA gene 140647058 140662479 4095.0 + 0 ENSG00000113141.17 protein_coding IK 1 OTTHUMG00000163374.4 ncRNA_host +50549 chr5 HAVANA gene 140670794 140673586 1605.0 - 0 ENSG00000256453.1 protein_coding DND1 2 OTTHUMG00000129499.2 overlapping_locus +50550 chr5 HAVANA gene 140664676 140674124 7675.0 + 0 ENSG00000120314.18 protein_coding WDR55 2 OTTHUMG00000129506.4 +50551 chr5 HAVANA gene 140673904 140691862 7853.0 - 0 ENSG00000170445.13 protein_coding HARS 2 OTTHUMG00000129502.11 overlapping_locus +50552 chr5 HAVANA gene 140691426 140699318 3736.0 + 0 ENSG00000112855.15 protein_coding HARS2 2 OTTHUMG00000129500.18 overlapping_locus +50553 chr5 HAVANA gene 140698680 140706676 1812.0 + 0 ENSG00000146007.10 protein_coding ZMAT2 1 OTTHUMG00000129503.8 overlapping_locus +50554 chr5 ENSEMBL gene 140711275 140711373 99.0 + 0 ENSG00000199990.1 misc_RNA VTRNA1-1 3 +50555 chr5 ENSEMBL gene 140718925 140719013 89.0 + 0 ENSG00000202111.1 misc_RNA VTRNA1-2 3 +50556 chr5 ENSEMBL gene 140726158 140726246 89.0 + 0 ENSG00000202515.1 misc_RNA VTRNA1-3 3 +50557 chr5 HAVANA gene 140732290 140732863 249.0 - 0 ENSG00000250515.1 processed_pseudogene AC116353.3 2 OTTHUMG00000163362.1 +50558 chr5 HAVANA gene 140764110 140764821 712.0 + 0 ENSG00000248106.2 processed_pseudogene AC116353.2 2 OTTHUMG00000163361.2 +50559 chr5 HAVANA gene 140788457 140822193 1523.0 - 0 ENSG00000279726.1 antisense AC005609.5 2 OTTHUMG00000189135.1 +50560 chr5 HAVANA gene 140849105 140849696 592.0 - 0 ENSG00000278907.1 antisense AC005609.2 2 OTTHUMG00000189136.1 +50561 chr5 HAVANA gene 140861224 140863521 2298.0 + 0 ENSG00000249504.3 transcribed_unprocessed_pseudogene PCDHA14 2 OTTHUMG00000163355.4 overlapping_locus +50562 chr5 HAVANA gene 140867513 140867959 447.0 - 0 ENSG00000278946.1 antisense AC005609.4 2 OTTHUMG00000189137.1 +50563 chr5 HAVANA gene 140875346 140875922 577.0 - 0 ENSG00000278915.1 antisense AC005609.3 2 OTTHUMG00000189138.1 +50564 chr5 HAVANA gene 140878073 140882642 617.0 - 0 ENSG00000278901.1 antisense AC005609.1 2 OTTHUMG00000189139.1 +50565 chr5 HAVANA gene 140966212 140966490 279.0 - 0 ENSG00000279028.1 antisense AC010223.1 2 OTTHUMG00000189140.1 +50566 chr5 HAVANA gene 140966235 141012344 6318.0 + 0 ENSG00000243232.4 protein_coding PCDHAC2 2 OTTHUMG00000129607.5 overlapping_locus +50567 chr5 HAVANA gene 140827958 141012344 6133.0 + 0 ENSG00000081842.17 protein_coding PCDHA6 2 OTTHUMG00000163353.4 overlapping_locus +50568 chr5 HAVANA gene 140834248 141012344 5788.0 + 0 ENSG00000204963.5 protein_coding PCDHA7 2 OTTHUMG00000163371.3 overlapping_locus +50569 chr5 HAVANA gene 140821604 141012344 7114.0 + 0 ENSG00000204965.8 protein_coding PCDHA5 2 OTTHUMG00000163367.3 overlapping_locus +50570 chr5 HAVANA gene 140868183 141012344 6284.0 + 0 ENSG00000249158.6 protein_coding PCDHA11 2 OTTHUMG00000163369.3 overlapping_locus +50571 chr5 HAVANA gene 140801028 141012344 7460.0 + 0 ENSG00000255408.3 protein_coding PCDHA3 2 OTTHUMG00000163357.3 overlapping_locus +50572 chr5 HAVANA gene 140875302 141012344 5454.0 + 0 ENSG00000251664.3 protein_coding PCDHA12 2 OTTHUMG00000163366.3 overlapping_locus +50573 chr5 HAVANA gene 140882208 141012344 5354.0 + 0 ENSG00000239389.7 protein_coding PCDHA13 1 OTTHUMG00000129614.3 overlapping_locus +50574 chr5 HAVANA gene 140926369 141012344 6943.0 + 0 ENSG00000248383.4 protein_coding PCDHAC1 2 OTTHUMG00000129603.3 overlapping_locus +50575 chr5 HAVANA gene 140794852 141012344 6054.0 + 0 ENSG00000204969.6 protein_coding PCDHA2 1 OTTHUMG00000163363.4 overlapping_locus +50576 chr5 HAVANA gene 140806929 141012344 13440.0 + 0 ENSG00000204967.10 protein_coding PCDHA4 2 OTTHUMG00000163360.3 overlapping_locus +50577 chr5 HAVANA gene 140841187 141012344 5482.0 + 0 ENSG00000204962.5 protein_coding PCDHA8 2 OTTHUMG00000163354.3 overlapping_locus +50578 chr5 HAVANA gene 140847463 141012344 10075.0 + 0 ENSG00000204961.6 protein_coding PCDHA9 2 OTTHUMG00000163373.3 overlapping_locus +50579 chr5 HAVANA gene 140855883 141012344 15224.0 + 0 ENSG00000250120.6 protein_coding PCDHA10 2 OTTHUMG00000163372.3 overlapping_locus +50580 chr5 HAVANA gene 140786136 141012347 5595.0 + 0 ENSG00000204970.9 protein_coding PCDHA1 2 OTTHUMG00000163368.3 overlapping_locus +50581 chr5 HAVANA gene 141051135 141059344 8210.0 + 0 ENSG00000171815.5 protein_coding PCDHB1 2 OTTHUMG00000129627.5 +50582 chr5 HAVANA gene 141078076 141084481 434.0 + 0 ENSG00000279558.1 lincRNA AC244517.9 2 OTTHUMG00000189122.1 +50583 chr5 HAVANA gene 141046260 141096402 1698.0 - 0 ENSG00000279047.3 antisense AC244517.5 2 OTTHUMG00000189121.1 +50584 chr5 HAVANA gene 141094578 141098703 4126.0 + 0 ENSG00000112852.6 protein_coding PCDHB2 2 OTTHUMG00000129606.5 +50585 chr5 HAVANA gene 141100473 141103827 3355.0 + 0 ENSG00000113205.5 protein_coding PCDHB3 2 OTTHUMG00000129622.5 +50586 chr5 HAVANA gene 141118680 141120765 2086.0 + 0 ENSG00000272108.1 lincRNA AC244517.1 2 OTTHUMG00000185595.1 +50587 chr5 HAVANA gene 141121799 141125623 3825.0 + 0 ENSG00000081818.3 protein_coding PCDHB4 2 OTTHUMG00000129617.4 +50588 chr5 HAVANA gene 141135218 141138625 3408.0 + 0 ENSG00000113209.8 protein_coding PCDHB5 2 OTTHUMG00000129616.5 +50589 chr5 HAVANA gene 141150022 141153287 3266.0 + 0 ENSG00000113211.5 protein_coding PCDHB6 2 OTTHUMG00000129623.5 +50590 chr5 HAVANA gene 141155996 141159061 3066.0 + 0 ENSG00000255622.3 transcribed_unprocessed_pseudogene PCDHB17P 2 OTTHUMG00000187247.3 +50591 chr5 HAVANA gene 141168231 141168893 663.0 + 0 ENSG00000280336.1 lincRNA AC244517.12 2 OTTHUMG00000189124.1 +50592 chr5 HAVANA gene 141100242 141174391 1059.0 - 0 ENSG00000272154.4 antisense AC244517.2 2 OTTHUMG00000185311.2 +50593 chr5 HAVANA gene 141172619 141176383 3765.0 + 0 ENSG00000113212.6 protein_coding PCDHB7 2 OTTHUMG00000129608.3 +50594 chr5 HAVANA gene 141177790 141180529 2740.0 + 0 ENSG00000120322.3 protein_coding PCDHB8 2 OTTHUMG00000129621.4 overlapping_locus +50595 chr5 HAVANA gene 141177849 141182369 467.0 + 0 ENSG00000279472.1 processed_transcript AC244517.8 2 OTTHUMG00000189125.1 overlapping_locus +50596 chr5 HAVANA gene 141181399 141186399 5001.0 + 0 ENSG00000272674.3 protein_coding PCDHB16 2 OTTHUMG00000188325.4 overlapping_locus +50597 chr5 HAVANA gene 141182409 141188582 631.0 + 0 ENSG00000279068.1 processed_transcript AC244517.6 2 OTTHUMG00000189126.1 overlapping_locus +50598 chr5 HAVANA gene 141187127 141191541 4415.0 + 0 ENSG00000177839.6 protein_coding PCDHB9 2 OTTHUMG00000188326.4 overlapping_locus +50599 chr5 HAVANA gene 141191599 141194088 398.0 - 0 ENSG00000279375.1 antisense AC244517.7 2 OTTHUMG00000189128.1 +50600 chr5 HAVANA gene 141192353 141195642 3290.0 + 0 ENSG00000120324.8 protein_coding PCDHB10 2 OTTHUMG00000129626.2 +50601 chr5 HAVANA gene 141183401 141201396 946.0 - 0 ENSG00000278936.1 antisense AC244517.4 2 OTTHUMG00000189127.1 +50602 chr5 HAVANA gene 141199582 141203779 4198.0 + 0 ENSG00000197479.6 protein_coding PCDHB11 2 OTTHUMG00000129618.2 +50603 chr5 HAVANA gene 141208697 141212571 3875.0 + 0 ENSG00000120328.6 protein_coding PCDHB12 2 OTTHUMG00000129620.3 +50604 chr5 HAVANA gene 141213919 141218979 5061.0 + 0 ENSG00000187372.11 protein_coding PCDHB13 2 OTTHUMG00000129615.2 +50605 chr5 HAVANA gene 141222932 141227759 4828.0 + 0 ENSG00000120327.6 protein_coding PCDHB14 2 OTTHUMG00000129619.4 overlapping_locus +50606 chr5 HAVANA gene 141234333 141237529 3197.0 + 0 ENSG00000146001.5 transcribed_unprocessed_pseudogene PCDHB18P 2 OTTHUMG00000167484.3 +50607 chr5 HAVANA gene 141239923 141243034 3112.0 + 0 ENSG00000262096.2 transcribed_unprocessed_pseudogene PCDHB19P 2 OTTHUMG00000177851.3 +50608 chr5 HAVANA gene 141136683 141245380 1528.0 - 0 ENSG00000280029.3 antisense AC244517.11 2 OTTHUMG00000189123.3 +50609 chr5 HAVANA gene 141223372 141245861 548.0 + 0 ENSG00000279983.1 protein_coding AC244517.10 2 OTTHUMG00000189134.1 overlapping_locus +50610 chr5 HAVANA gene 141245349 141249365 4017.0 + 0 ENSG00000113248.5 protein_coding PCDHB15 2 OTTHUMG00000129609.5 overlapping_locus +50611 chr5 HAVANA gene 141259235 141261364 1235.0 + 0 ENSG00000277795.1 processed_pseudogene AC244517.3 2 OTTHUMG00000187632.1 +50612 chr5 HAVANA gene 141302629 141304045 1417.0 - 0 ENSG00000120329.6 protein_coding SLC25A2 2 OTTHUMG00000129604.4 retrogene +50613 chr5 HAVANA gene 141260225 141320821 2723.0 - 0 ENSG00000178913.7 protein_coding TAF7 2 OTTHUMG00000129628.6 retrogene +50614 chr5 HAVANA gene 141326210 141329357 3148.0 + 0 ENSG00000272070.1 lincRNA AC005618.1 2 OTTHUMG00000185596.1 +50615 chr5 HAVANA gene 141350109 141350662 554.0 - 0 ENSG00000280026.1 antisense AC005618.3 2 OTTHUMG00000189141.1 +50616 chr5 HAVANA gene 141427295 141427752 458.0 - 0 ENSG00000279855.1 antisense AC005618.2 2 OTTHUMG00000189142.1 +50617 chr5 HAVANA gene 141426286 141429158 2873.0 + 0 ENSG00000248449.2 transcribed_unitary_pseudogene PCDHGB8P 2 OTTHUMG00000154974.2 overlapping_locus +50618 chr5 HAVANA gene 141439853 141442449 2297.0 + 0 ENSG00000276545.1 unprocessed_pseudogene PCDHGB9P 2 OTTHUMG00000188233.1 +50619 chr5 HAVANA gene 141468465 141471528 335.0 + 0 ENSG00000273557.1 sense_intronic AC008781.3 2 OTTHUMG00000188234.1 +50620 chr5 ENSEMBL gene 141479316 141479625 310.0 + 0 ENSG00000242020.3 misc_RNA RN7SL68P 3 +50621 chr5 HAVANA gene 141355025 141512979 4887.0 + 0 ENSG00000262576.2 protein_coding PCDHGA4 2 OTTHUMG00000177593.3 ncRNA_host,overlapping_locus +50622 chr5 HAVANA gene 141373914 141512979 7910.0 + 0 ENSG00000253731.2 protein_coding PCDHGA6 2 OTTHUMG00000163684.2 ncRNA_host,overlapping_locus +50623 chr5 HAVANA gene 141338760 141512979 6724.0 + 0 ENSG00000081853.14 protein_coding PCDHGA2 2 OTTHUMG00000163679.3 ncRNA_host,overlapping_locus +50624 chr5 HAVANA gene 141382739 141512979 5443.0 + 0 ENSG00000253537.2 protein_coding PCDHGA7 2 OTTHUMG00000163685.2 ncRNA_host,overlapping_locus +50625 chr5 HAVANA gene 141402932 141512979 4749.0 + 0 ENSG00000261934.2 protein_coding PCDHGA9 2 OTTHUMG00000177473.2 ncRNA_host,overlapping_locus +50626 chr5 HAVANA gene 141360042 141512979 4769.0 + 0 ENSG00000253910.2 protein_coding PCDHGB2 2 OTTHUMG00000163682.2 ncRNA_host,overlapping_locus +50627 chr5 HAVANA gene 141430589 141512979 4815.0 + 0 ENSG00000253159.2 protein_coding PCDHGA12 2 OTTHUMG00000129611.5 ncRNA_host,overlapping_locus +50628 chr5 HAVANA gene 141421047 141512979 5814.0 + 0 ENSG00000253873.5 protein_coding PCDHGA11 2 OTTHUMG00000164055.2 ncRNA_host,overlapping_locus +50629 chr5 HAVANA gene 141397987 141512979 4851.0 + 0 ENSG00000276547.1 protein_coding PCDHGB5 2 OTTHUMG00000188231.2 ncRNA_host,overlapping_locus +50630 chr5 HAVANA gene 141408021 141512979 6782.0 + 0 ENSG00000253305.2 protein_coding PCDHGB6 2 OTTHUMG00000163687.2 ncRNA_host,overlapping_locus +50631 chr5 HAVANA gene 141364232 141512979 5733.0 + 0 ENSG00000253485.2 protein_coding PCDHGA5 2 OTTHUMG00000163683.2 ncRNA_host,overlapping_locus +50632 chr5 HAVANA gene 141370264 141512979 4757.0 + 0 ENSG00000262209.2 protein_coding PCDHGB3 2 OTTHUMG00000177471.4 ncRNA_host,overlapping_locus +50633 chr5 HAVANA gene 141343829 141512979 4876.0 + 0 ENSG00000254245.2 protein_coding PCDHGA3 2 OTTHUMG00000163680.4 ncRNA_host,overlapping_locus +50634 chr5 HAVANA gene 141412987 141512979 6643.0 + 0 ENSG00000253846.2 protein_coding PCDHGA10 2 OTTHUMG00000163688.2 ncRNA_host,overlapping_locus +50635 chr5 HAVANA gene 141350102 141512979 4773.0 + 0 ENSG00000254221.2 protein_coding PCDHGB1 2 OTTHUMG00000163681.4 ncRNA_host,overlapping_locus +50636 chr5 HAVANA gene 141417645 141512979 4966.0 + 0 ENSG00000254122.2 protein_coding PCDHGB7 2 OTTHUMG00000164054.2 ncRNA_host,overlapping_locus +50637 chr5 HAVANA gene 141387698 141512979 6906.0 + 0 ENSG00000253953.2 protein_coding PCDHGB4 2 OTTHUMG00000163686.2 ncRNA_host,overlapping_locus +50638 chr5 HAVANA gene 141484997 141512979 4974.0 + 0 ENSG00000242419.5 protein_coding PCDHGC4 2 OTTHUMG00000129625.4 overlapping_locus +50639 chr5 HAVANA gene 141390157 141512979 8661.0 + 0 ENSG00000253767.2 protein_coding PCDHGA8 2 OTTHUMG00000164053.2 ncRNA_host,overlapping_locus +50640 chr5 HAVANA gene 141489121 141512979 4990.0 + 0 ENSG00000240764.3 protein_coding PCDHGC5 2 OTTHUMG00000129624.2 overlapping_locus +50641 chr5 HAVANA gene 141475947 141512979 5432.0 + 0 ENSG00000240184.6 protein_coding PCDHGC3 2 OTTHUMG00000129613.7 ncRNA_host,overlapping_locus +50642 chr5 HAVANA gene 141330571 141512981 6252.0 + 0 ENSG00000204956.5 protein_coding PCDHGA1 2 OTTHUMG00000163678.4 ncRNA_host,overlapping_locus +50643 chr5 HAVANA gene 141558311 141565263 2480.0 + 0 ENSG00000246422.2 antisense AC008781.2 1 OTTHUMG00000164151.1 +50644 chr5 HAVANA gene 141588935 141589142 208.0 + 0 ENSG00000240974.1 processed_pseudogene RPS27AP10 1 OTTHUMG00000157873.1 pseudo_consens +50645 chr5 HAVANA gene 141515016 141619055 7082.0 - 0 ENSG00000131504.16 protein_coding DIAPH1 2 OTTHUMG00000149893.17 +50646 chr5 HAVANA gene 141618414 141626481 621.0 + 0 ENSG00000228737.2 antisense AC008781.1 2 OTTHUMG00000150501.2 +50647 chr5 HAVANA gene 141620876 141636870 4631.0 - 0 ENSG00000171720.9 protein_coding HDAC3 2 OTTHUMG00000129629.5 +50648 chr5 HAVANA gene 141636950 141641077 2596.0 + 0 ENSG00000164620.8 protein_coding RELL2 2 OTTHUMG00000129612.4 +50649 chr5 HAVANA gene 141639302 141651419 6073.0 - 0 ENSG00000197948.10 protein_coding FCHSD1 1 OTTHUMG00000163762.4 +50650 chr5 HAVANA gene 141653401 141682221 6186.0 - 0 ENSG00000120318.15 protein_coding ARAP3 1 OTTHUMG00000129610.6 +50651 chr5 HAVANA gene 141825708 141826325 618.0 - 0 ENSG00000278925.1 lincRNA AC005753.1 2 OTTHUMG00000162830.1 +50652 chr5 HAVANA gene 141853111 141879246 5903.0 - 0 ENSG00000156453.13 protein_coding PCDH1 1 OTTHUMG00000129661.6 +50653 chr5 HAVANA gene 141896168 141896689 522.0 - 0 ENSG00000226040.3 processed_pseudogene AC005740.1 1 OTTHUMG00000162831.1 pseudo_consens +50654 chr5 HAVANA gene 141923808 141942047 6047.0 + 0 ENSG00000081791.8 protein_coding DELE1 1 OTTHUMG00000129662.5 +50655 chr5 HAVANA gene 141952419 141953375 957.0 + 0 ENSG00000271871.1 antisense AC005740.4 2 OTTHUMG00000185597.1 +50656 chr5 HAVANA gene 141943585 141969741 6820.0 - 0 ENSG00000113555.5 protein_coding PCDH12 2 OTTHUMG00000129658.5 +50657 chr5 HAVANA gene 141970637 141982687 344.0 - 0 ENSG00000254099.1 antisense AC005740.3 2 OTTHUMG00000165057.1 +50658 chr5 HAVANA gene 141958328 141990291 4987.0 + 0 ENSG00000013561.17 protein_coding RNF14 1 OTTHUMG00000129660.7 +50659 chr5 HAVANA gene 141991749 142013041 3961.0 - 0 ENSG00000113552.15 protein_coding GNPDA1 1 OTTHUMG00000129657.4 +50660 chr5 HAVANA gene 142036707 142037125 419.0 - 0 ENSG00000250347.1 processed_pseudogene AC005740.2 1 OTTHUMG00000162832.1 pseudo_consens +50661 chr5 HAVANA gene 142108505 142154443 6024.0 + 0 ENSG00000131507.10 protein_coding NDFIP1 2 OTTHUMG00000129659.4 +50662 chr5 HAVANA gene 142165767 142168387 2621.0 + 0 ENSG00000280047.1 TEC AC091825.1 2 OTTHUMG00000162829.1 +50663 chr5 ENSEMBL gene 142317830 142317920 91.0 + 0 ENSG00000277968.1 misc_RNA RF02038 3 +50664 chr5 ENSEMBL gene 142318047 142318167 121.0 + 0 ENSG00000274721.1 misc_RNA RF02039 3 +50665 chr5 HAVANA gene 142310427 142326455 5930.0 - 0 ENSG00000187678.9 protein_coding SPRY4 2 OTTHUMG00000129663.5 +50666 chr5 HAVANA gene 142566700 142567076 377.0 + 0 ENSG00000225147.1 processed_pseudogene RPS12P10 1 OTTHUMG00000102185.1 pseudo_consens,overlapping_locus +50667 chr5 HAVANA gene 142325293 142672001 1811.0 + 0 ENSG00000231185.6 antisense SPRY4-AS1 2 OTTHUMG00000133693.3 overlapping_locus +50668 chr5 HAVANA gene 142592178 142698070 5275.0 - 0 ENSG00000113578.17 protein_coding FGF1 1 OTTHUMG00000059703.9 +50669 chr5 HAVANA gene 142703782 142705421 1640.0 + 0 ENSG00000261757.1 lincRNA AC005592.1 2 OTTHUMG00000173470.1 +50670 chr5 HAVANA gene 142745600 142760998 2237.0 + 0 ENSG00000236714.1 lincRNA LINC01844 2 OTTHUMG00000059704.1 +50671 chr5 HAVANA gene 142859604 142868922 990.0 - 0 ENSG00000226272.5 antisense ARHGAP26-AS1 2 OTTHUMG00000059702.2 +50672 chr5 HAVANA gene 142946569 142947105 537.0 - 0 ENSG00000285366.1 TEC AC008533.1 2 OTTHUMG00000192463.1 +50673 chr5 HAVANA gene 143192500 143194166 388.0 + 0 ENSG00000230789.1 sense_intronic ARHGAP26-IT1 1 OTTHUMG00000067192.1 overlapping_locus +50674 chr5 HAVANA gene 142770377 143229011 17158.0 + 0 ENSG00000145819.16 protein_coding ARHGAP26 1 OTTHUMG00000059705.14 overlapping_locus +50675 chr5 HAVANA gene 143332605 143333239 635.0 + 0 ENSG00000231579.3 processed_pseudogene RPL7P21 1 OTTHUMG00000157888.2 pseudo_consens +50676 chr5 HAVANA gene 143375628 143375883 256.0 - 0 ENSG00000279679.1 TEC AC091925.2 2 OTTHUMG00000188122.1 +50677 chr5 HAVANA gene 143406959 143407420 462.0 + 0 ENSG00000279130.1 TEC AC091925.1 2 OTTHUMG00000188121.1 +50678 chr5 HAVANA gene 143277931 143435512 9172.0 - 0 ENSG00000113580.14 protein_coding NR3C1 2 OTTHUMG00000129677.3 overlapping_locus +50679 chr5 HAVANA gene 143489855 143531350 560.0 - 0 ENSG00000249429.1 lincRNA AC016598.1 2 OTTHUMG00000163174.1 +50680 chr5 ENSEMBL gene 143542514 143542587 74.0 - 0 ENSG00000253023.1 snRNA RNU7-156P 3 +50681 chr5 HAVANA gene 143559219 143562548 525.0 + 0 ENSG00000251205.2 lincRNA AC016598.2 2 OTTHUMG00000163170.2 +50682 chr5 ENSEMBL gene 143679860 143679971 112.0 + 0 ENSG00000266478.1 miRNA MIR5197 3 +50683 chr5 HAVANA gene 143752090 143752704 615.0 - 0 ENSG00000225869.4 processed_pseudogene AC008696.1 1 OTTHUMG00000163169.2 pseudo_consens +50684 chr5 HAVANA gene 143812161 143820719 384.0 + 0 ENSG00000158497.3 protein_coding HMHB1 2 OTTHUMG00000163173.1 overlapping_locus +50685 chr5 HAVANA gene 143605628 143828772 825.0 + 0 ENSG00000249881.1 sense_overlapping AC008696.2 2 OTTHUMG00000163171.1 ncRNA_host,overlapping_locus +50686 chr5 ENSEMBL gene 144140879 144141166 288.0 + 0 ENSG00000239390.3 misc_RNA RN7SL87P 3 +50687 chr5 HAVANA gene 144158159 144170714 3701.0 - 0 ENSG00000145817.16 protein_coding YIPF5 2 OTTHUMG00000129679.5 +50688 chr5 HAVANA gene 144369334 144385310 469.0 + 0 ENSG00000249605.1 sense_intronic AC008652.1 2 OTTHUMG00000163168.1 overlapping_locus +50689 chr5 HAVANA gene 144439206 144439478 273.0 + 0 ENSG00000250972.1 processed_pseudogene CKS1BP5 1 OTTHUMG00000163167.1 pseudo_consens,overlapping_locus +50690 chr5 HAVANA gene 144439204 144468471 1317.0 - 0 ENSG00000285605.1 lincRNA AC109441.1 2 OTTHUMG00000193253.1 +50691 chr5 HAVANA gene 144170832 144485686 14294.0 + 0 ENSG00000183775.10 protein_coding KCTD16 2 OTTHUMG00000163172.4 overlapping_locus +50692 chr5 HAVANA gene 144522140 144522988 513.0 + 0 ENSG00000213488.4 processed_pseudogene AC008716.1 1 OTTHUMG00000163177.1 pseudo_consens +50693 chr5 ENSEMBL gene 144535354 144535670 317.0 - 0 ENSG00000201423.1 misc_RNA RN7SKP246 3 +50694 chr5 HAVANA gene 145001853 145005789 1115.0 - 0 ENSG00000249229.2 processed_pseudogene NAMPTP2 1 OTTHUMG00000163347.2 pseudo_consens +50695 chr5 HAVANA gene 145222610 145228982 493.0 - 0 ENSG00000251031.1 lincRNA AC132803.1 2 OTTHUMG00000163345.1 +50696 chr5 HAVANA gene 145228811 145230054 1244.0 + 0 ENSG00000215325.4 processed_pseudogene ASS1P10 1 OTTHUMG00000163346.1 pseudo_consens +50697 chr5 HAVANA gene 145337932 145381670 530.0 - 0 ENSG00000250842.1 lincRNA AC137770.1 2 OTTHUMG00000163476.1 +50698 chr5 HAVANA gene 145429868 145451099 1099.0 + 0 ENSG00000248125.1 lincRNA AC008700.1 2 OTTHUMG00000163385.2 +50699 chr5 HAVANA gene 145728360 145729349 876.0 - 0 ENSG00000249363.1 processed_pseudogene AC011411.1 1 OTTHUMG00000163386.2 pseudo_consens,overlapping_locus +50700 chr5 HAVANA gene 145471799 145835369 5375.0 - 0 ENSG00000186314.11 protein_coding PRELID2 1 OTTHUMG00000163384.4 overlapping_locus +50701 chr5 HAVANA gene 145858521 145937126 2191.0 - 0 ENSG00000204928.2 protein_coding GRXCR2 2 OTTHUMG00000163417.4 +50702 chr5 HAVANA gene 145997218 145998003 786.0 + 0 ENSG00000248493.1 processed_pseudogene AC005351.1 1 OTTHUMG00000163416.1 pseudo_consens,overlapping_locus +50703 chr5 HAVANA gene 145936579 146081791 7232.0 + 0 ENSG00000156463.17 protein_coding SH3RF2 2 OTTHUMG00000129685.5 overlapping_locus +50704 chr5 HAVANA gene 146084386 146104369 656.0 - 0 ENSG00000173261.8 protein_coding PLAC8L1 2 OTTHUMG00000163418.2 +50705 chr5 HAVANA gene 146099406 146120412 439.0 + 0 ENSG00000251556.1 antisense AC091887.1 2 OTTHUMG00000163443.1 +50706 chr5 HAVANA gene 146137755 146138381 321.0 + 0 ENSG00000239602.1 processed_pseudogene AC091959.2 1 OTTHUMG00000157894.1 pseudo_consens +50707 chr5 HAVANA gene 146138771 146139008 238.0 + 0 ENSG00000239317.1 processed_pseudogene AC091959.1 1 OTTHUMG00000157895.1 pseudo_consens +50708 chr5 HAVANA gene 146113038 146182660 8118.0 - 0 ENSG00000133706.17 protein_coding LARS 2 OTTHUMG00000163429.2 +50709 chr5 ENSEMBL gene 146245191 146245253 63.0 - 0 ENSG00000238374.1 snRNA RNU7-180P 3 +50710 chr5 HAVANA gene 146203600 146289132 6578.0 + 0 ENSG00000091009.7 protein_coding RBM27 2 OTTHUMG00000163436.4 overlapping_locus +50711 chr5 HAVANA gene 146203550 146339251 3311.0 + 0 ENSG00000275740.1 protein_coding AC091959.3 2 OTTHUMG00000188625.1 +50712 chr5 HAVANA gene 146338839 146341722 2569.0 + 0 ENSG00000091010.5 protein_coding POU4F3 2 OTTHUMG00000129684.3 overlapping_locus +50713 chr5 HAVANA gene 146375591 146376219 512.0 - 0 ENSG00000271724.1 sense_intronic AC011396.3 2 OTTHUMG00000163435.1 overlapping_locus +50714 chr5 HAVANA gene 146307098 146376963 874.0 - 0 ENSG00000250025.2 antisense AC011396.2 1 OTTHUMG00000185377.1 overlapping_locus +50715 chr5 HAVANA gene 146400981 146407359 312.0 + 0 ENSG00000248842.1 lincRNA AC011396.1 1 OTTHUMG00000163475.1 +50716 chr5 ENSEMBL gene 146510116 146510271 156.0 + 0 ENSG00000277568.1 misc_RNA RF02271 3 +50717 chr5 HAVANA gene 146447311 146511961 8714.0 + 0 ENSG00000113649.11 protein_coding TCERG1 2 OTTHUMG00000129683.4 ncRNA_host +50718 chr5 HAVANA gene 146513103 146516190 3088.0 - 0 ENSG00000173250.2 protein_coding GPR151 2 OTTHUMG00000163444.1 +50719 chr5 ENSEMBL gene 146586099 146586200 102.0 - 0 ENSG00000280646.2 rRNA_pseudogene RNA5SP196 3 +50720 chr5 HAVANA gene 146563226 146617004 691.0 + 0 ENSG00000250407.1 antisense AC008728.1 2 OTTHUMG00000163449.1 +50721 chr5 ENSEMBL gene 146656401 146656695 295.0 - 0 ENSG00000241291.3 misc_RNA RN7SL791P 3 +50722 chr5 HAVANA gene 146706381 146707600 1220.0 - 0 ENSG00000248568.1 processed_pseudogene KRT8P48 1 OTTHUMG00000163409.1 pseudo_consens,overlapping_locus +50723 chr5 HAVANA gene 146914207 146919506 447.0 - 0 ENSG00000249553.1 sense_intronic PPP2R2B-IT1 2 OTTHUMG00000129687.3 overlapping_locus +50724 chr5 HAVANA gene 146581146 147084784 13206.0 - 0 ENSG00000156475.18 protein_coding PPP2R2B 1 OTTHUMG00000163381.10 ncRNA_host,overlapping_locus +50725 chr5 HAVANA gene 147180204 147234859 863.0 - 0 ENSG00000250343.1 antisense STK32A-AS1 2 OTTHUMG00000163410.1 +50726 chr5 HAVANA gene 147234963 147387852 7776.0 + 0 ENSG00000169302.15 protein_coding STK32A 1 OTTHUMG00000163411.5 +50727 chr5 HAVANA gene 147401760 147401996 237.0 + 0 ENSG00000272239.1 antisense AC011373.1 2 OTTHUMG00000185600.1 +50728 chr5 HAVANA gene 147390811 147510056 7164.0 - 0 ENSG00000113657.12 protein_coding DPYSL3 2 OTTHUMG00000163437.3 +50729 chr5 HAVANA gene 147559994 147662009 2106.0 + 0 ENSG00000280780.2 antisense JAKMIP2-AS1 2 OTTHUMG00000189513.1 +50730 chr5 HAVANA gene 147585439 147782848 9275.0 - 0 ENSG00000176049.15 protein_coding JAKMIP2 2 OTTHUMG00000129731.2 +50731 chr5 HAVANA gene 147824568 147831786 1480.0 - 0 ENSG00000164266.10 protein_coding SPINK1 2 OTTHUMG00000129730.3 +50732 chr5 HAVANA gene 147851644 147852659 1016.0 - 0 ENSG00000249518.1 processed_pseudogene AC011352.2 2 OTTHUMG00000163423.1 +50733 chr5 HAVANA gene 147870682 147882191 1075.0 + 0 ENSG00000164265.8 protein_coding SCGB3A2 2 OTTHUMG00000129729.2 +50734 chr5 HAVANA gene 147886086 147886878 793.0 - 0 ENSG00000248362.1 antisense AC011352.1 2 OTTHUMG00000163422.1 overlapping_locus +50735 chr5 HAVANA gene 147887112 147887704 593.0 + 0 ENSG00000251320.1 antisense AC011352.3 2 OTTHUMG00000163419.1 +50736 chr5 HAVANA gene 147880726 147906538 1232.0 - 0 ENSG00000178776.4 protein_coding C5orf46 2 OTTHUMG00000163420.1 overlapping_locus +50737 chr5 HAVANA gene 147922179 147923421 1243.0 + 0 ENSG00000250346.1 processed_pseudogene EEF1GP2 1 OTTHUMG00000163421.1 pseudo_consens +50738 chr5 HAVANA gene 148025683 148137289 4381.0 + 0 ENSG00000133710.15 protein_coding SPINK5 2 OTTHUMG00000134305.8 +50739 chr5 HAVANA gene 148169733 148175398 294.0 + 0 ENSG00000196800.6 protein_coding SPINK14 2 OTTHUMG00000129732.3 +50740 chr5 HAVANA gene 148202794 148215137 733.0 + 0 ENSG00000178172.6 protein_coding SPINK6 2 OTTHUMG00000163425.2 +50741 chr5 HAVANA gene 148221360 148221642 283.0 - 0 ENSG00000249503.1 processed_pseudogene HMGN1P16 2 OTTHUMG00000163428.1 +50742 chr5 HAVANA gene 148221650 148243580 1799.0 + 0 ENSG00000248109.2 protein_coding MARCOL 2 OTTHUMG00000163424.4 +50743 chr5 HAVANA gene 148268180 148286254 1174.0 + 0 ENSG00000214510.9 protein_coding SPINK13 2 OTTHUMG00000163426.3 +50744 chr5 HAVANA gene 148307298 148308258 581.0 + 0 ENSG00000249834.3 processed_pseudogene PGBD4P3 2 OTTHUMG00000163432.3 +50745 chr5 HAVANA gene 148312419 148315922 1545.0 + 0 ENSG00000145879.10 protein_coding SPINK7 2 OTTHUMG00000163522.5 +50746 chr5 HAVANA gene 148321203 148339849 841.0 + 0 ENSG00000204909.7 protein_coding SPINK9 2 OTTHUMG00000163431.2 +50747 chr5 HAVANA gene 148362777 148372152 279.0 + 0 ENSG00000283653.1 unprocessed_pseudogene AC091948.2 2 OTTHUMG00000191783.1 +50748 chr5 HAVANA gene 148268307 148383783 2033.0 - 0 ENSG00000247199.4 antisense AC091948.1 2 OTTHUMG00000163558.3 +50749 chr5 ENSEMBL gene 148389748 148390029 282.0 + 0 ENSG00000274799.1 misc_RNA RF00017 3 +50750 chr5 HAVANA gene 148430159 148430807 514.0 - 0 ENSG00000251330.3 antisense AC114939.1 2 OTTHUMG00000163560.2 +50751 chr5 HAVANA gene 148383935 148442836 8722.0 + 0 ENSG00000145868.16 protein_coding FBXO38 2 OTTHUMG00000129929.5 ncRNA_host +50752 chr5 HAVANA gene 148644687 148646390 1704.0 - 0 ENSG00000253297.1 sense_intronic AC008627.1 2 OTTHUMG00000163564.1 overlapping_locus +50753 chr5 HAVANA gene 148451032 148677235 7045.0 - 0 ENSG00000164270.17 protein_coding HTR4 1 OTTHUMG00000129931.8 overlapping_locus +50754 chr5 HAVANA gene 148825245 148828687 3443.0 + 0 ENSG00000169252.5 protein_coding ADRB2 2 OTTHUMG00000129933.1 +50755 chr5 HAVANA gene 148970340 148970653 314.0 + 0 ENSG00000272411.1 antisense AC116312.1 2 OTTHUMG00000185601.1 +50756 chr5 ENSEMBL gene 149057554 149057656 103.0 - 0 ENSG00000251842.1 snRNA RNU6-732P 3 +50757 chr5 ENSEMBL gene 149062313 149062409 97.0 - 0 ENSG00000207714.3 miRNA MIR584 3 +50758 chr5 HAVANA gene 148923639 149063163 15047.0 - 0 ENSG00000169247.12 protein_coding SH3TC2 1 OTTHUMG00000129930.5 ncRNA_host +50759 chr5 HAVANA gene 149063317 149109787 4313.0 + 0 ENSG00000250072.5 lincRNA SH3TC2-DT 2 OTTHUMG00000163433.1 +50760 chr5 ENSEMBL gene 149116178 149116480 303.0 - 0 ENSG00000200161.1 misc_RNA RN7SKP145 3 +50761 chr5 HAVANA gene 149141483 149260542 7225.0 + 0 ENSG00000173210.19 protein_coding ABLIM3 2 OTTHUMG00000129932.3 +50762 chr5 HAVANA gene 149163955 149276776 738.0 - 0 ENSG00000248647.2 antisense AC012613.1 2 OTTHUMG00000163434.2 overlapping_locus +50763 chr5 HAVANA gene 149216523 149276805 4533.0 - 0 ENSG00000253406.1 antisense AC012613.2 2 OTTHUMG00000163504.1 overlapping_locus +50764 chr5 HAVANA gene 149271871 149341802 4721.0 + 0 ENSG00000157510.13 protein_coding AFAP1L1 2 OTTHUMG00000163441.3 +50765 chr5 HAVANA gene 149324220 149345333 857.0 - 0 ENSG00000285736.1 bidirectional_promoter_lncRNA AC131025.3 2 OTTHUMG00000193171.1 +50766 chr5 HAVANA gene 149345430 149354583 4419.0 + 0 ENSG00000164284.14 protein_coding GRPEL2 1 OTTHUMG00000130048.2 +50767 chr5 HAVANA gene 149348116 149357642 401.0 - 0 ENSG00000253618.1 antisense GRPEL2-AS1 1 OTTHUMG00000165071.1 +50768 chr5 HAVANA gene 149358007 149369653 6069.0 + 0 ENSG00000145882.10 protein_coding PCYOX1L 2 OTTHUMG00000130052.4 +50769 chr5 HAVANA gene 149372174 149375116 588.0 + 0 ENSG00000253865.1 antisense AC131025.1 1 OTTHUMG00000165070.1 +50770 chr5 HAVANA gene 149371324 149404202 1211.0 - 0 ENSG00000127743.5 protein_coding IL17B 2 OTTHUMG00000130051.3 +50771 chr5 HAVANA gene 149425771 149428289 422.0 - 0 ENSG00000275871.1 lincRNA AC131025.2 2 OTTHUMG00000187188.1 +50772 chr5 ENSEMBL gene 149428918 149429023 106.0 + 0 ENSG00000284182.1 miRNA MIR143 3 +50773 chr5 ENSEMBL gene 149430646 149430733 88.0 + 0 ENSG00000276365.1 miRNA MIR145 3 +50774 chr5 HAVANA gene 149406689 149432835 17988.0 + 0 ENSG00000249669.9 lincRNA CARMN 2 OTTHUMG00000163464.8 ncRNA_host +50775 chr5 HAVANA gene 149494314 149504670 8636.0 - 0 ENSG00000230551.4 processed_transcript AC021078.1 2 OTTHUMG00000163462.2 overlapping_locus +50776 chr5 HAVANA gene 149545383 149545810 428.0 - 0 ENSG00000241112.1 processed_pseudogene RPL29P14 1 OTTHUMG00000157900.1 pseudo_consens,overlapping_locus +50777 chr5 HAVANA gene 149492197 149551552 7714.0 - 0 ENSG00000113712.17 protein_coding CSNK1A1 2 OTTHUMG00000163463.5 overlapping_locus +50778 chr5 ENSEMBL gene 149606637 149606741 105.0 - 0 ENSG00000222213.1 snRNA RNU6-588P 3 +50779 chr5 HAVANA gene 149551947 149634968 5324.0 + 0 ENSG00000183111.11 protein_coding ARHGEF37 2 OTTHUMG00000163491.2 +50780 chr5 ENSEMBL gene 149695748 149695959 212.0 - 0 ENSG00000221043.2 snoRNA RF00012 3 +50781 chr5 ENSEMBL gene 149722070 149722372 303.0 + 0 ENSG00000242928.3 misc_RNA RN7SL868P 3 +50782 chr5 ENSEMBL gene 149732825 149732890 66.0 + 0 ENSG00000199047.3 miRNA MIR378A 3 +50783 chr5 HAVANA gene 149730298 149855022 12889.0 + 0 ENSG00000155846.16 protein_coding PPARGC1B 1 OTTHUMG00000130055.2 ncRNA_host +50784 chr5 HAVANA gene 149932014 149932668 655.0 - 0 ENSG00000251583.1 processed_pseudogene AC008427.1 1 OTTHUMG00000163492.1 pseudo_consens,overlapping_locus +50785 chr5 ENSEMBL gene 149940030 149940131 102.0 - 0 ENSG00000200334.1 misc_RNA RF00019 3 +50786 chr5 HAVANA gene 149857955 149944793 7415.0 - 0 ENSG00000132915.10 protein_coding PDE6A 2 OTTHUMG00000130047.2 ncRNA_host,overlapping_locus +50787 chr5 HAVANA gene 149960737 149993455 8606.0 + 0 ENSG00000155850.7 protein_coding SLC26A2 1 OTTHUMG00000130054.4 +50788 chr5 HAVANA gene 149993118 150001167 4640.0 - 0 ENSG00000164296.6 protein_coding TIGD6 2 OTTHUMG00000130045.4 +50789 chr5 HAVANA gene 150014785 150015154 370.0 - 0 ENSG00000248696.1 processed_pseudogene AC011406.1 1 OTTHUMG00000163494.1 pseudo_consens +50790 chr5 HAVANA gene 150021567 150021921 355.0 - 0 ENSG00000241907.1 processed_pseudogene RPS20P4 1 OTTHUMG00000157903.1 pseudo_consens +50791 chr5 HAVANA gene 150000046 150053142 6263.0 + 0 ENSG00000113716.12 protein_coding HMGXB3 2 OTTHUMG00000163493.1 +50792 chr5 HAVANA gene 150094302 150095048 747.0 + 0 ENSG00000214485.6 processed_pseudogene RPL7P1 2 OTTHUMG00000157906.1 +50793 chr5 ENSEMBL gene 150098406 150098506 101.0 + 0 ENSG00000199409.1 misc_RNA RF00019 3 +50794 chr5 HAVANA gene 150053291 150113372 5151.0 - 0 ENSG00000182578.13 protein_coding CSF1R 2 OTTHUMG00000130050.4 +50795 chr5 HAVANA gene 150113837 150155872 7137.0 - 0 ENSG00000113721.13 protein_coding PDGFRB 1 OTTHUMG00000130053.4 +50796 chr5 HAVANA gene 150166795 150184558 1758.0 + 0 ENSG00000113722.16 protein_coding CDX1 2 OTTHUMG00000169772.10 +50797 chr5 HAVANA gene 150189957 150222788 4391.0 + 0 ENSG00000011083.8 protein_coding SLC6A7 1 OTTHUMG00000130046.3 +50798 chr5 HAVANA gene 150219491 150290291 6150.0 - 0 ENSG00000070808.15 protein_coding CAMK2A 2 OTTHUMG00000134281.6 +50799 chr5 HAVANA gene 150296343 150339307 3269.0 - 0 ENSG00000183876.8 protein_coding ARSI 2 OTTHUMG00000163479.3 retrogene +50800 chr5 HAVANA gene 150357629 150400308 11439.0 + 0 ENSG00000070814.19 protein_coding TCOF1 1 OTTHUMG00000130081.16 +50801 chr5 HAVANA gene 150401637 150412929 3184.0 - 0 ENSG00000019582.14 protein_coding CD74 2 OTTHUMG00000163559.3 +50802 chr5 HAVANA gene 150442635 150449756 5099.0 - 0 ENSG00000164587.12 protein_coding RPS14 2 OTTHUMG00000130080.6 +50803 chr5 HAVANA gene 150475531 150485968 368.0 - 0 ENSG00000254333.1 lincRNA NDST1-AS1 2 OTTHUMG00000163588.1 +50804 chr5 HAVANA gene 150485818 150558211 9529.0 + 0 ENSG00000070614.14 protein_coding NDST1 1 OTTHUMG00000163572.5 +50805 chr5 HAVANA gene 150608428 150615354 617.0 - 0 ENSG00000253852.1 antisense AC011383.1 1 OTTHUMG00000165096.1 +50806 chr5 HAVANA gene 150601080 150659220 10258.0 + 0 ENSG00000171992.12 protein_coding SYNPO 2 OTTHUMG00000130078.2 +50807 chr5 HAVANA gene 150670658 150672390 425.0 - 0 ENSG00000250309.2 antisense AC008453.1 1 OTTHUMG00000165097.1 +50808 chr5 HAVANA gene 150660874 150679365 6037.0 + 0 ENSG00000164591.13 protein_coding MYOZ3 2 OTTHUMG00000130077.3 +50809 chr5 HAVANA gene 150690794 150701107 3615.0 - 0 ENSG00000086589.11 protein_coding RBM22 2 OTTHUMG00000163589.4 +50810 chr5 HAVANA gene 150708440 150759109 6417.0 - 0 ENSG00000132912.12 protein_coding DCTN4 2 OTTHUMG00000130079.5 +50811 chr5 HAVANA gene 150777946 150796734 2332.0 + 0 ENSG00000256235.2 protein_coding SMIM3 2 OTTHUMG00000163646.4 +50812 chr5 HAVANA gene 150846523 150900736 2271.0 + 0 ENSG00000237693.4 protein_coding IRGM 2 OTTHUMG00000163647.3 +50813 chr5 HAVANA gene 150894392 150904983 4411.0 - 0 ENSG00000145908.12 protein_coding ZNF300 2 OTTHUMG00000130076.2 +50814 chr5 HAVANA gene 150930645 150946289 3127.0 - 0 ENSG00000197083.11 transcribed_unprocessed_pseudogene ZNF300P1 1 OTTHUMG00000154830.2 pseudo_consens +50815 chr5 HAVANA gene 150950109 150952460 766.0 - 0 ENSG00000274235.1 unprocessed_pseudogene AC022106.1 2 OTTHUMG00000187637.1 +50816 chr5 HAVANA gene 150978419 150979175 757.0 + 0 ENSG00000277866.1 unprocessed_pseudogene AC022106.2 2 OTTHUMG00000187642.1 +50817 chr5 HAVANA gene 151020438 151028993 3163.0 + 0 ENSG00000211445.11 protein_coding GPX3 1 OTTHUMG00000163693.3 +50818 chr5 HAVANA gene 151029945 151093577 5793.0 - 0 ENSG00000145901.15 protein_coding TNIP1 1 OTTHUMG00000163722.7 +50819 chr5 HAVANA gene 151100712 151157882 5427.0 - 0 ENSG00000197043.13 protein_coding ANXA6 1 OTTHUMG00000164179.6 +50820 chr5 HAVANA gene 151158106 151158462 248.0 - 0 ENSG00000254298.1 lincRNA AC008641.1 2 OTTHUMG00000164977.1 +50821 chr5 HAVANA gene 151173981 151180617 888.0 + 0 ENSG00000285420.1 unitary_pseudogene AC011342.1 2 OTTHUMG00000192467.1 +50822 chr5 HAVANA gene 151181052 151224145 4993.0 - 0 ENSG00000198624.12 protein_coding CCDC69 2 OTTHUMG00000130127.2 +50823 chr5 HAVANA gene 151212150 151270440 4479.0 + 0 ENSG00000196743.8 protein_coding GM2A 2 OTTHUMG00000130124.3 +50824 chr5 HAVANA gene 151276762 151303766 4575.0 - 0 ENSG00000186334.9 protein_coding SLC36A3 2 OTTHUMG00000130128.2 +50825 chr5 HAVANA gene 151319422 151319776 355.0 + 0 ENSG00000270904.1 processed_pseudogene AC008385.1 1 OTTHUMG00000184553.1 pseudo_consens +50826 chr5 HAVANA gene 151314978 151347590 4263.0 - 0 ENSG00000186335.8 protein_coding SLC36A2 2 OTTHUMG00000130129.2 +50827 chr5 HAVANA gene 151378003 151378640 638.0 - 0 ENSG00000253472.1 processed_pseudogene AC034205.1 1 OTTHUMG00000163501.1 pseudo_consens,overlapping_locus +50828 chr5 HAVANA gene 151380341 151382381 1376.0 + 0 ENSG00000271494.1 processed_pseudogene AC034205.3 1 OTTHUMG00000184562.1 pseudo_consens +50829 chr5 HAVANA gene 151366299 151436953 2058.0 - 0 ENSG00000253897.2 transcribed_unprocessed_pseudogene AC034205.2 1 OTTHUMG00000163498.2 pseudo_consens,overlapping_locus +50830 chr5 ENSEMBL gene 151477459 151477577 119.0 - 0 ENSG00000200227.1 rRNA_pseudogene RNA5SP197 3 +50831 chr5 HAVANA gene 151437046 151492381 6980.0 + 0 ENSG00000123643.12 protein_coding SLC36A1 1 OTTHUMG00000130125.4 +50832 chr5 HAVANA gene 151509453 151512769 3317.0 + 0 ENSG00000271795.1 antisense AC011337.1 2 OTTHUMG00000185605.1 +50833 chr5 ENSEMBL gene 151522087 151522148 62.0 - 0 ENSG00000276622.1 miRNA MIR6499 3 +50834 chr5 HAVANA gene 151504093 151568944 14537.0 - 0 ENSG00000086570.12 protein_coding FAT2 1 OTTHUMG00000130126.2 ncRNA_host +50835 chr5 HAVANA gene 151652275 151655449 1567.0 + 0 ENSG00000260581.1 antisense AC011374.1 2 OTTHUMG00000175434.1 +50836 chr5 HAVANA gene 151661096 151687165 4831.0 - 0 ENSG00000113140.10 protein_coding SPARC 1 OTTHUMG00000130122.4 +50837 chr5 ENSEMBL gene 151704289 151704578 290.0 - 0 ENSG00000222102.1 misc_RNA RN7SKP232 3 +50838 chr5 HAVANA gene 151676945 151724782 2191.0 + 0 ENSG00000249035.6 antisense CLMAT3 2 OTTHUMG00000163500.2 +50839 chr5 HAVANA gene 151724831 151725356 526.0 - 0 ENSG00000272112.1 lincRNA AC011374.2 2 OTTHUMG00000185606.1 +50840 chr5 HAVANA gene 151765859 151766378 520.0 - 0 ENSG00000213433.5 transcribed_processed_pseudogene RPLP1P6 1 OTTHUMG00000157909.2 pseudo_consens,overlapping_locus +50841 chr5 HAVANA gene 151753992 151767247 570.0 + 0 ENSG00000253921.1 antisense AC091982.1 2 OTTHUMG00000163524.1 +50842 chr5 HAVANA gene 151770242 151771508 726.0 - 0 ENSG00000275765.5 lincRNA AC091982.3 2 OTTHUMG00000189272.1 overlapping_locus +50843 chr5 HAVANA gene 151742316 151772532 5239.0 - 0 ENSG00000177556.11 protein_coding ATOX1 2 OTTHUMG00000163499.3 overlapping_locus +50844 chr5 HAVANA gene 151771045 151812785 12406.0 + 0 ENSG00000145907.14 protein_coding G3BP1 2 OTTHUMG00000130123.3 +50845 chr5 HAVANA gene 151848886 151850791 1115.0 + 0 ENSG00000270978.1 processed_pseudogene AC091982.2 1 OTTHUMG00000184548.1 pseudo_consens +50846 chr5 ENSEMBL gene 151875566 151875692 127.0 - 0 ENSG00000222308.1 rRNA_pseudogene RNA5SP198 3 +50847 chr5 HAVANA gene 151822513 151924842 2434.0 - 0 ENSG00000145888.10 protein_coding GLRA1 2 OTTHUMG00000130121.2 +50848 chr5 HAVANA gene 151949571 152270448 3745.0 + 0 ENSG00000254226.5 lincRNA LINC01933 2 OTTHUMG00000163523.1 +50849 chr5 HAVANA gene 152391532 152433368 2345.0 - 0 ENSG00000132911.4 protein_coding NMUR2 2 OTTHUMG00000130131.2 +50850 chr5 HAVANA gene 152495718 152496017 300.0 - 0 ENSG00000242080.1 processed_pseudogene AC008571.1 1 OTTHUMG00000157910.1 pseudo_consens +50851 chr5 HAVANA gene 152618965 153223543 3409.0 - 0 ENSG00000249484.8 lincRNA LINC01470 2 OTTHUMG00000163486.3 +50852 chr5 ENSEMBL gene 153755382 153755680 299.0 + 0 ENSG00000242976.3 misc_RNA RN7SL177P 3 +50853 chr5 HAVANA gene 153489615 153813869 7636.0 + 0 ENSG00000155511.17 protein_coding GRIA1 1 OTTHUMG00000130148.6 ncRNA_host +50854 chr5 HAVANA gene 153887428 153898987 537.0 - 0 ENSG00000251183.1 lincRNA LINC01861 2 OTTHUMG00000163488.1 +50855 chr5 HAVANA gene 153901459 153903223 1765.0 + 0 ENSG00000261382.1 lincRNA AC091962.1 2 OTTHUMG00000175437.2 +50856 chr5 HAVANA gene 153990128 154038936 6543.0 - 0 ENSG00000055147.18 protein_coding FAM114A2 2 OTTHUMG00000130147.14 +50857 chr5 HAVANA gene 154038906 154220478 4792.0 + 0 ENSG00000037749.12 protein_coding MFAP3 2 OTTHUMG00000130149.4 overlapping_locus +50858 chr5 HAVANA gene 154337471 154338452 982.0 - 0 ENSG00000253119.1 processed_pseudogene HNRNPA3P7 1 OTTHUMG00000163603.1 pseudo_consens,overlapping_locus +50859 chr5 ENSEMBL gene 154347106 154347247 142.0 + 0 ENSG00000221430.1 miRNA MIR1294 3 +50860 chr5 ENSEMBL gene 154349428 154349725 298.0 + 0 ENSG00000241963.3 misc_RNA RN7SL655P 3 +50861 chr5 HAVANA gene 154190730 154420984 10496.0 + 0 ENSG00000164574.15 protein_coding GALNT10 2 OTTHUMG00000130145.4 ncRNA_host,overlapping_locus +50862 chr5 HAVANA gene 154329437 154445850 1972.0 - 0 ENSG00000245275.7 antisense SAP30L-AS1 2 OTTHUMG00000163570.2 overlapping_locus +50863 chr5 HAVANA gene 154445957 154461054 6755.0 + 0 ENSG00000164576.11 protein_coding SAP30L 2 OTTHUMG00000130146.6 +50864 chr5 HAVANA gene 154474972 154478264 1738.0 - 0 ENSG00000113196.2 protein_coding HAND1 2 OTTHUMG00000130193.1 +50865 chr5 HAVANA gene 154483917 154486150 1865.0 - 0 ENSG00000254293.1 lincRNA AC026688.2 2 OTTHUMG00000163601.1 +50866 chr5 HAVANA gene 154493576 154494743 1168.0 + 0 ENSG00000253886.1 processed_pseudogene AC026688.1 1 OTTHUMG00000163602.2 pseudo_consens +50867 chr5 HAVANA gene 154559308 154560440 1133.0 - 0 ENSG00000253146.1 processed_pseudogene CIR1P1 1 OTTHUMG00000164140.1 pseudo_consens +50868 chr5 ENSEMBL gene 154596012 154596072 61.0 - 0 ENSG00000264760.1 miRNA MIR3141 3 +50869 chr5 ENSEMBL gene 154685776 154685861 86.0 + 0 ENSG00000221552.1 miRNA MIR1303 3 +50870 chr5 ENSEMBL gene 154705626 154705727 102.0 + 0 ENSG00000274472.1 misc_RNA RF00019 3 +50871 chr5 ENSEMBL gene 154718383 154718689 307.0 - 0 ENSG00000272197.2 misc_RNA RN7SL803P 3 +50872 chr5 HAVANA gene 154729231 154729694 464.0 + 0 ENSG00000241187.1 processed_pseudogene AC008379.1 1 OTTHUMG00000157914.1 pseudo_consens,overlapping_locus +50873 chr5 HAVANA gene 154712902 154817607 8492.0 + 0 ENSG00000155506.16 protein_coding LARP1 1 OTTHUMG00000130191.3 overlapping_locus +50874 chr5 ENSEMBL gene 154821943 154822258 316.0 + 0 ENSG00000277039.1 misc_RNA RF00017 3 +50875 chr5 ENSEMBL gene 154829458 154829540 83.0 + 0 ENSG00000263361.1 miRNA MIR378H 3 +50876 chr5 HAVANA gene 154818491 154859252 7222.0 - 0 ENSG00000170271.10 protein_coding FAXDC2 1 OTTHUMG00000164141.2 +50877 chr5 HAVANA gene 154857553 154876793 3930.0 + 0 ENSG00000155508.13 protein_coding CNOT8 1 OTTHUMG00000130192.3 +50878 chr5 HAVANA gene 154887416 154938209 5637.0 - 0 ENSG00000082516.8 protein_coding GEMIN5 2 OTTHUMG00000130189.2 +50879 chr5 HAVANA gene 154941070 154969411 5267.0 + 0 ENSG00000082515.17 protein_coding MRPL22 2 OTTHUMG00000130190.2 +50880 chr5 HAVANA gene 154993598 154994445 339.0 + 0 ENSG00000253261.1 processed_pseudogene AC008410.1 1 OTTHUMG00000164142.1 pseudo_consens +50881 chr5 HAVANA gene 155013755 155018132 4378.0 + 0 ENSG00000226650.5 protein_coding KIF4B 2 OTTHUMG00000164143.1 retrogene +50882 chr5 HAVANA gene 155111184 155112324 851.0 - 0 ENSG00000253646.1 processed_pseudogene AC010476.1 1 OTTHUMG00000164144.1 pseudo_consens +50883 chr5 HAVANA gene 155397291 155398353 649.0 + 0 ENSG00000271477.1 processed_pseudogene AC010591.1 1 OTTHUMG00000184554.2 pseudo_consens +50884 chr5 HAVANA gene 155491336 155493598 2263.0 + 0 ENSG00000270442.1 processed_pseudogene AC008725.1 1 OTTHUMG00000184569.1 pseudo_consens +50885 chr5 ENSEMBL gene 155845437 155845528 92.0 + 0 ENSG00000200275.1 rRNA_pseudogene RNA5SP199 3 +50886 chr5 HAVANA gene 156458398 156458507 110.0 - 0 ENSG00000253370.2 unprocessed_pseudogene AC027308.1 2 OTTHUMG00000163451.2 +50887 chr5 HAVANA gene 156704058 156739812 460.0 - 0 ENSG00000254163.1 antisense AC025434.1 1 OTTHUMG00000163450.1 +50888 chr5 HAVANA gene 155870344 156767788 10584.0 + 0 ENSG00000170624.13 protein_coding SGCD 2 OTTHUMG00000163445.4 +50889 chr5 ENSEMBL gene 156814130 156814234 105.0 + 0 ENSG00000199468.1 snRNA RNU6-556P 3 +50890 chr5 HAVANA gene 156850538 156852528 1991.0 + 0 ENSG00000231989.4 protein_coding PPP1R2B 2 OTTHUMG00000163467.3 retrogene +50891 chr5 HAVANA gene 156924119 156924710 592.0 + 0 ENSG00000270560.1 processed_pseudogene APOOP1 1 OTTHUMG00000184530.1 pseudo_consens +50892 chr5 HAVANA gene 156919282 156963255 1555.0 - 0 ENSG00000145850.8 protein_coding TIMD4 2 OTTHUMG00000130244.2 +50893 chr5 HAVANA gene 157029413 157059119 2151.0 - 0 ENSG00000113249.12 protein_coding HAVCR1 2 OTTHUMG00000163466.3 +50894 chr5 HAVANA gene 157104788 157114900 275.0 + 0 ENSG00000254246.1 antisense AC011377.1 1 OTTHUMG00000163482.1 +50895 chr5 HAVANA gene 157085832 157142869 3804.0 - 0 ENSG00000135077.8 protein_coding HAVCR2 2 OTTHUMG00000130249.3 overlapping_locus +50896 chr5 HAVANA gene 157137412 157159019 2913.0 - 0 ENSG00000155868.7 protein_coding MED7 2 OTTHUMG00000130243.4 overlapping_locus +50897 chr5 HAVANA gene 157161846 157166264 2515.0 - 0 ENSG00000170613.4 protein_coding FAM71B 2 OTTHUMG00000130246.2 +50898 chr5 HAVANA gene 157199242 157224380 569.0 - 0 ENSG00000253980.1 antisense AC010609.1 2 OTTHUMG00000163481.1 +50899 chr5 HAVANA gene 157142933 157255191 8604.0 + 0 ENSG00000113263.12 protein_coding ITK 2 OTTHUMG00000130245.4 +50900 chr5 HAVANA gene 157260122 157266625 911.0 - 0 ENSG00000253653.1 antisense AC009185.1 1 OTTHUMG00000163496.1 +50901 chr5 HAVANA gene 157341600 157345721 2285.0 - 0 ENSG00000172568.4 protein_coding FNDC9 2 OTTHUMG00000130248.4 overlapping_locus +50902 chr5 HAVANA gene 157363382 157365501 1992.0 - 0 ENSG00000251405.3 sense_overlapping AC016571.1 1 OTTHUMG00000163480.3 overlapping_locus +50903 chr5 HAVANA gene 157375741 157384950 2078.0 - 0 ENSG00000248544.2 antisense AC008676.1 1 OTTHUMG00000163483.2 overlapping_locus +50904 chr5 HAVANA gene 157266079 157395595 10498.0 + 0 ENSG00000055163.19 protein_coding CYFIP2 1 OTTHUMG00000163484.6 +50905 chr5 HAVANA gene 157422439 157422873 435.0 + 0 ENSG00000253155.1 processed_pseudogene AC008676.2 1 OTTHUMG00000157917.1 pseudo_consens +50906 chr5 HAVANA gene 157341596 157460100 4266.0 - 0 ENSG00000285868.1 protein_coding AC008676.3 2 OTTHUMG00000193404.1 +50907 chr5 HAVANA gene 157460019 157474717 4208.0 + 0 ENSG00000172548.14 protein_coding NIPAL4 2 OTTHUMG00000163497.1 +50908 chr5 HAVANA gene 157565964 157569098 1845.0 + 0 ENSG00000253519.1 antisense AC106801.1 2 OTTHUMG00000163509.1 +50909 chr5 HAVANA gene 157395534 157575775 7704.0 - 0 ENSG00000135074.15 protein_coding ADAM19 2 OTTHUMG00000130242.2 overlapping_locus +50910 chr5 ENSEMBL gene 157579497 157579599 103.0 + 0 ENSG00000252068.1 snRNA RNU6-390P 3 +50911 chr5 HAVANA gene 157604707 157605637 306.0 - 0 ENSG00000254336.1 processed_pseudogene AC008694.2 1 OTTHUMG00000163510.1 pseudo_consens +50912 chr5 HAVANA gene 157625679 157671480 3471.0 - 0 ENSG00000039600.10 protein_coding SOX30 2 OTTHUMG00000130247.2 +50913 chr5 HAVANA gene 157671553 157680143 686.0 + 0 ENSG00000187658.6 protein_coding C5orf52 2 OTTHUMG00000154518.1 +50914 chr5 HAVANA gene 157682985 157690878 1040.0 - 0 ENSG00000253798.2 transcribed_unprocessed_pseudogene AC008694.1 2 OTTHUMG00000163511.2 +50915 chr5 HAVANA gene 157731197 157741448 3220.0 + 0 ENSG00000113272.13 protein_coding THG1L 2 OTTHUMG00000130254.4 +50916 chr5 HAVANA gene 157747504 157747707 204.0 - 0 ENSG00000253630.1 unprocessed_pseudogene AC026407.1 2 OTTHUMG00000163528.1 +50917 chr5 HAVANA gene 157743695 157760709 6584.0 + 0 ENSG00000155858.5 protein_coding LSM11 2 OTTHUMG00000130255.2 +50918 chr5 ENSEMBL gene 157809098 157809204 107.0 + 0 ENSG00000206819.1 snRNA RNU6-260P 3 +50919 chr5 HAVANA gene 157785743 157859175 6368.0 - 0 ENSG00000113282.13 protein_coding CLINT1 1 OTTHUMG00000163527.3 +50920 chr5 HAVANA gene 157931258 157931563 306.0 - 0 ENSG00000244331.1 processed_pseudogene AC008677.2 1 OTTHUMG00000157920.1 pseudo_consens +50921 chr5 ENSEMBL gene 157976766 157976956 191.0 - 0 ENSG00000222626.1 snRNA RNU2-48P 3 +50922 chr5 HAVANA gene 157986146 157987706 1561.0 - 0 ENSG00000213414.3 processed_pseudogene AC008677.1 1 OTTHUMG00000163566.1 pseudo_consens,overlapping_locus +50923 chr5 HAVANA gene 157984658 157989990 1670.0 - 0 ENSG00000253743.1 unprocessed_pseudogene MARK2P11 1 OTTHUMG00000163529.3 pseudo_consens,overlapping_locus +50924 chr5 HAVANA gene 158078099 158078764 666.0 - 0 ENSG00000253422.1 processed_pseudogene AC008677.3 1 OTTHUMG00000163533.1 pseudo_consens +50925 chr5 HAVANA gene 158173601 158176422 314.0 - 0 ENSG00000253792.1 lincRNA AC025437.5 2 OTTHUMG00000163534.1 +50926 chr5 HAVANA gene 158188977 158189911 935.0 - 0 ENSG00000254047.2 processed_pseudogene AC025437.6 1 OTTHUMG00000163532.2 pseudo_consens +50927 chr5 HAVANA gene 158175396 158200016 681.0 + 0 ENSG00000253673.1 lincRNA AC025437.4 2 OTTHUMG00000163515.1 +50928 chr5 HAVANA gene 158225352 158234376 771.0 - 0 ENSG00000253449.1 lincRNA AC025437.3 2 OTTHUMG00000163530.1 +50929 chr5 HAVANA gene 158256137 158258436 548.0 + 0 ENSG00000253424.1 lincRNA AC025437.2 2 OTTHUMG00000163521.1 +50930 chr5 HAVANA gene 158275711 158278813 346.0 + 0 ENSG00000253134.1 lincRNA AC025437.1 2 OTTHUMG00000163517.1 +50931 chr5 HAVANA gene 158320683 158409773 3748.0 - 0 ENSG00000276778.1 lincRNA LINC02227 2 OTTHUMG00000186522.1 +50932 chr5 HAVANA gene 158424585 158452758 706.0 + 0 ENSG00000254350.1 lincRNA AC091979.1 2 OTTHUMG00000163518.1 +50933 chr5 HAVANA gene 158464465 158464678 214.0 + 0 ENSG00000272085.1 lincRNA AC091979.2 2 OTTHUMG00000185607.1 +50934 chr5 HAVANA gene 158485190 158588546 1341.0 + 0 ENSG00000254135.2 lincRNA AC091939.1 2 OTTHUMG00000163519.2 +50935 chr5 HAVANA gene 158983006 158984789 563.0 + 0 ENSG00000253811.1 antisense AC136424.2 2 OTTHUMG00000163516.1 +50936 chr5 HAVANA gene 158985806 158987199 542.0 + 0 ENSG00000253456.1 antisense AC136424.1 2 OTTHUMG00000163514.1 +50937 chr5 HAVANA gene 158695916 159099761 6178.0 - 0 ENSG00000164330.16 protein_coding EBF1 1 OTTHUMG00000130304.4 +50938 chr5 HAVANA gene 159106380 159108617 2238.0 + 0 ENSG00000279204.1 TEC AC134043.2 2 OTTHUMG00000185339.1 overlapping_locus +50939 chr5 HAVANA gene 159100483 159117478 3214.0 + 0 ENSG00000245812.2 lincRNA LINC02202 1 OTTHUMG00000163513.1 overlapping_locus +50940 chr5 HAVANA gene 159157409 159210053 4614.0 - 0 ENSG00000145860.11 protein_coding RNF145 1 OTTHUMG00000130306.5 +50941 chr5 ENSEMBL gene 159230194 159230322 129.0 + 0 ENSG00000252458.1 snoRNA RF00263 3 +50942 chr5 HAVANA gene 159227715 159245127 573.0 + 0 ENSG00000253315.1 lincRNA LINC01932 2 OTTHUMG00000163520.1 ncRNA_host,overlapping_locus +50943 chr5 HAVANA gene 159209921 159248796 638.0 + 0 ENSG00000253256.1 antisense AC134043.1 2 OTTHUMG00000163512.1 ncRNA_host,overlapping_locus +50944 chr5 HAVANA gene 159263081 159286040 2676.0 + 0 ENSG00000164332.7 protein_coding UBLCP1 2 OTTHUMG00000130305.3 +50945 chr5 ENSEMBL gene 159318042 159318167 126.0 + 0 ENSG00000221601.1 snRNA RNU4ATAC2P 3 +50946 chr5 HAVANA gene 159314783 159330887 2761.0 - 0 ENSG00000113302.4 protein_coding IL12B 2 OTTHUMG00000130307.3 +50947 chr5 HAVANA gene 159448556 159466276 2012.0 - 0 ENSG00000253298.1 lincRNA LINC01845 2 OTTHUMG00000163542.2 +50948 chr5 HAVANA gene 159484130 159511687 1174.0 - 0 ENSG00000283413.1 lincRNA AC008703.1 2 OTTHUMG00000191707.1 +50949 chr5 HAVANA gene 159310745 159805536 13436.0 + 0 ENSG00000249738.10 antisense AC008691.1 2 OTTHUMG00000163541.5 ncRNA_host +50950 chr5 HAVANA gene 159698586 159937766 7553.0 - 0 ENSG00000253311.2 antisense LINC01847 2 OTTHUMG00000163543.3 +50951 chr5 HAVANA gene 159950493 159951498 1006.0 - 0 ENSG00000248626.1 processed_pseudogene GAPDHP40 1 OTTHUMG00000159985.1 pseudo_consens +50952 chr5 HAVANA gene 159865080 159972544 2687.0 + 0 ENSG00000170214.4 protein_coding ADRA1B 2 OTTHUMG00000130327.2 +50953 chr5 ENSEMBL gene 160008445 160008546 102.0 + 0 ENSG00000199398.1 misc_RNA RF00019 3 +50954 chr5 HAVANA gene 160023740 160024045 306.0 - 0 ENSG00000223908.5 processed_pseudogene AC068657.1 1 OTTHUMG00000163545.3 pseudo_consens +50955 chr5 HAVANA gene 160009113 160065543 1938.0 + 0 ENSG00000113312.10 protein_coding TTC1 1 OTTHUMG00000130326.4 +50956 chr5 HAVANA gene 160061801 160119423 6510.0 - 0 ENSG00000170234.12 protein_coding PWWP2A 1 OTTHUMG00000163546.3 +50957 chr5 HAVANA gene 160195744 160204826 2890.0 - 0 ENSG00000247699.2 antisense AC008609.1 1 OTTHUMG00000163565.1 +50958 chr5 HAVANA gene 160187367 160238735 1164.0 + 0 ENSG00000170231.15 protein_coding FABP6 2 OTTHUMG00000130329.6 +50959 chr5 HAVANA gene 160247517 160248217 701.0 + 0 ENSG00000253772.1 processed_pseudogene AC112191.1 1 OTTHUMG00000163539.1 pseudo_consens +50960 chr5 HAVANA gene 160258253 160258585 333.0 + 0 ENSG00000254373.1 processed_pseudogene AC112191.2 1 OTTHUMG00000163538.1 pseudo_consens +50961 chr5 HAVANA gene 160326693 160326969 277.0 + 0 ENSG00000270612.1 processed_pseudogene AC112191.3 1 OTTHUMG00000184574.1 pseudo_consens +50962 chr5 HAVANA gene 160249106 160345396 9209.0 - 0 ENSG00000135083.15 protein_coding CCNJL 1 OTTHUMG00000130325.6 +50963 chr5 HAVANA gene 160347751 160370641 2414.0 - 0 ENSG00000145861.7 protein_coding C1QTNF2 2 OTTHUMG00000130323.2 +50964 chr5 HAVANA gene 160393148 160400097 2925.0 - 0 ENSG00000221886.3 protein_coding ZBED8 2 OTTHUMG00000163554.1 +50965 chr5 HAVANA gene 160401641 160421711 5082.0 - 0 ENSG00000164609.9 protein_coding SLU7 2 OTTHUMG00000130324.3 +50966 chr5 HAVANA gene 160421822 160428744 2013.0 + 0 ENSG00000164611.12 protein_coding PTTG1 2 OTTHUMG00000130328.5 +50967 chr5 ENSEMBL gene 160474402 160474483 82.0 + 0 ENSG00000265237.1 miRNA MIR3142 3 +50968 chr5 ENSEMBL gene 160485352 160485450 99.0 + 0 ENSG00000283733.1 miRNA MIR146A 3 +50969 chr5 HAVANA gene 160438594 160487426 2377.0 + 0 ENSG00000253522.6 lincRNA MIR3142HG 2 OTTHUMG00000163553.2 ncRNA_host +50970 chr5 HAVANA gene 160613873 160639183 731.0 + 0 ENSG00000253687.1 antisense AC008456.1 2 OTTHUMG00000163561.1 +50971 chr5 HAVANA gene 160685351 160692889 458.0 + 0 ENSG00000254391.1 antisense AC011363.1 2 OTTHUMG00000163552.1 +50972 chr5 HAVANA gene 160563120 160852214 11310.0 - 0 ENSG00000118322.13 protein_coding ATP10B 1 OTTHUMG00000163551.3 +50973 chr5 HAVANA gene 160931778 160938626 2323.0 - 0 ENSG00000253417.5 lincRNA LINC02159 2 OTTHUMG00000163562.1 +50974 chr5 HAVANA gene 161288429 161549044 10002.0 - 0 ENSG00000145864.12 protein_coding GABRB2 2 OTTHUMG00000130349.2 +50975 chr5 HAVANA gene 161687347 161689408 449.0 - 0 ENSG00000253403.1 antisense AC091944.1 1 OTTHUMG00000163585.1 +50976 chr5 HAVANA gene 161547063 161702593 3738.0 + 0 ENSG00000145863.10 protein_coding GABRA6 1 OTTHUMG00000130351.4 +50977 chr5 HAVANA gene 161751448 161751768 321.0 - 0 ENSG00000118990.5 processed_pseudogene GLRXP3 1 OTTHUMG00000157505.1 pseudo_consens +50978 chr5 HAVANA gene 161847063 161899981 6935.0 + 0 ENSG00000022355.16 protein_coding GABRA1 2 OTTHUMG00000163586.9 +50979 chr5 HAVANA gene 161910252 162001196 907.0 - 0 ENSG00000280776.1 lincRNA LINC01202 2 OTTHUMG00000189552.1 +50980 chr5 HAVANA gene 162000057 162162977 22914.0 + 0 ENSG00000113327.16 protein_coding GABRG2 2 OTTHUMG00000130350.8 +50981 chr5 ENSEMBL gene 162477891 162477993 103.0 + 0 ENSG00000201474.1 snRNA RNU6-164P 3 +50982 chr5 HAVANA gene 162761833 162762313 481.0 + 0 ENSG00000254351.1 processed_pseudogene ARL2BPP5 1 OTTHUMG00000163550.1 pseudo_consens +50983 chr5 HAVANA gene 163039291 163039599 309.0 + 0 ENSG00000249449.1 processed_pseudogene MRPL57P6 2 OTTHUMG00000163327.1 +50984 chr5 HAVANA gene 163416525 163416731 207.0 + 0 ENSG00000250114.1 unprocessed_pseudogene AC008723.1 2 OTTHUMG00000163375.1 +50985 chr5 HAVANA gene 162424042 163437326 8161.0 - 0 ENSG00000254186.2 antisense AC113414.1 2 OTTHUMG00000163326.3 +50986 chr5 HAVANA gene 163437569 163446151 3096.0 + 0 ENSG00000113328.18 protein_coding CCNG1 1 OTTHUMG00000130380.8 +50987 chr5 HAVANA gene 163446526 163460140 8847.0 - 0 ENSG00000170584.10 protein_coding NUDCD2 2 OTTHUMG00000130378.3 +50988 chr5 HAVANA gene 163460203 163491945 3936.0 + 0 ENSG00000072571.19 protein_coding HMMR 2 OTTHUMG00000130381.7 +50989 chr5 HAVANA gene 163483065 163494058 957.0 - 0 ENSG00000251018.2 antisense HMMR-AS1 2 OTTHUMG00000163557.1 +50990 chr5 HAVANA gene 163503114 163519336 5153.0 + 0 ENSG00000038274.16 protein_coding MAT2B 2 OTTHUMG00000130379.6 +50991 chr5 HAVANA gene 163597352 163612516 545.0 - 0 ENSG00000285590.1 lincRNA AC010291.1 2 OTTHUMG00000192780.1 +50992 chr5 HAVANA gene 163709210 163709514 305.0 - 0 ENSG00000224012.3 processed_pseudogene AC116917.1 1 OTTHUMG00000162875.1 pseudo_consens +50993 chr5 ENSEMBL gene 163796065 163796165 101.0 - 0 ENSG00000251998.1 snRNA RNU6-168P 3 +50994 chr5 HAVANA gene 163855140 163856642 1320.0 - 0 ENSG00000273569.1 processed_pseudogene AC008432.1 2 OTTHUMG00000187644.1 +50995 chr5 HAVANA gene 163887506 163887827 322.0 - 0 ENSG00000271679.1 processed_pseudogene LSM1P2 1 OTTHUMG00000184369.1 pseudo_consens +50996 chr5 HAVANA gene 164209631 164211892 389.0 + 0 ENSG00000253538.1 lincRNA AC008662.2 2 OTTHUMG00000162874.1 +50997 chr5 HAVANA gene 164119098 164234097 674.0 - 0 ENSG00000253331.1 lincRNA AC008662.1 2 OTTHUMG00000162876.1 +50998 chr5 HAVANA gene 164448422 164467402 520.0 - 0 ENSG00000253236.1 lincRNA LINC02143 2 OTTHUMG00000162886.1 +50999 chr5 HAVANA gene 164601002 164601452 451.0 - 0 ENSG00000253600.1 processed_pseudogene AC008446.1 1 OTTHUMG00000157923.1 pseudo_consens +51000 chr5 ENSEMBL gene 164935162 164935268 107.0 - 0 ENSG00000206845.1 snRNA RNU6-209P 3 +51001 chr5 HAVANA gene 165129307 165153014 1197.0 - 0 ENSG00000285549.1 lincRNA AC091973.1 2 OTTHUMG00000193065.1 +51002 chr5 HAVANA gene 164296696 165171643 6294.0 + 0 ENSG00000241956.9 antisense AC109466.1 2 OTTHUMG00000162877.7 +51003 chr5 HAVANA gene 165220577 165241752 1947.0 - 0 ENSG00000254066.1 lincRNA LINC01938 2 OTTHUMG00000163861.1 +51004 chr5 ENSEMBL gene 165609441 165609679 239.0 + 0 ENSG00000252794.1 misc_RNA RN7SKP60 3 +51005 chr5 HAVANA gene 165349030 165778689 734.0 + 0 ENSG00000253693.1 lincRNA AC008415.1 2 OTTHUMG00000163870.1 ncRNA_host +51006 chr5 HAVANA gene 165782805 165783134 330.0 - 0 ENSG00000253512.1 processed_pseudogene AC008562.1 1 OTTHUMG00000162894.1 pseudo_consens +51007 chr5 HAVANA gene 165905126 165905608 483.0 + 0 ENSG00000253946.1 processed_pseudogene AC008489.1 1 OTTHUMG00000157926.2 pseudo_consens +51008 chr5 HAVANA gene 166028567 166029311 745.0 - 0 ENSG00000254252.1 processed_pseudogene RPL7P20 1 OTTHUMG00000157934.2 pseudo_consens +51009 chr5 HAVANA gene 166128498 166155439 533.0 + 0 ENSG00000254171.1 lincRNA AC114321.1 1 OTTHUMG00000163917.1 +51010 chr5 HAVANA gene 166382305 166382599 295.0 + 0 ENSG00000229119.3 processed_pseudogene AC026403.1 1 OTTHUMG00000162895.1 pseudo_consens +51011 chr5 HAVANA gene 166905222 166926370 566.0 - 0 ENSG00000254130.1 lincRNA LINC01947 2 OTTHUMG00000162904.1 +51012 chr5 HAVANA gene 167116318 167119585 490.0 - 0 ENSG00000253713.1 lincRNA AC091819.2 1 OTTHUMG00000163871.1 +51013 chr5 HAVANA gene 167164934 167168401 630.0 - 0 ENSG00000253469.1 lincRNA AC091819.1 2 OTTHUMG00000162918.1 +51014 chr5 HAVANA gene 167287320 167294273 523.0 - 0 ENSG00000254365.1 antisense AC091820.2 2 OTTHUMG00000163873.1 +51015 chr5 HAVANA gene 167296234 167303372 648.0 - 0 ENSG00000254297.1 antisense AC091820.1 1 OTTHUMG00000162917.1 +51016 chr5 HAVANA gene 167306273 167309870 527.0 - 0 ENSG00000253527.1 antisense AC008601.1 1 OTTHUMG00000162919.1 +51017 chr5 HAVANA gene 167653228 167660481 1124.0 - 0 ENSG00000254187.1 antisense AC008708.2 2 OTTHUMG00000162925.1 +51018 chr5 HAVANA gene 167721363 167729124 474.0 + 0 ENSG00000253357.1 sense_intronic AC008708.1 2 OTTHUMG00000163874.1 overlapping_locus +51019 chr5 HAVANA gene 167937717 167953469 663.0 - 0 ENSG00000253660.1 antisense AC008464.1 2 OTTHUMG00000162966.1 +51020 chr5 HAVANA gene 167965187 167967086 489.0 - 0 ENSG00000253947.1 antisense AC008705.1 2 OTTHUMG00000162965.1 +51021 chr5 ENSEMBL gene 168033091 168033205 115.0 - 0 ENSG00000253065.1 snoRNA RF00561 3 +51022 chr5 HAVANA gene 168128856 168130422 1567.0 + 0 ENSG00000279739.1 TEC AC011369.2 2 OTTHUMG00000163875.1 overlapping_locus +51023 chr5 HAVANA gene 168085329 168187719 2181.0 - 0 ENSG00000253925.1 antisense AC011369.1 2 OTTHUMG00000162967.1 +51024 chr5 HAVANA gene 168229583 168232357 503.0 - 0 ENSG00000253978.1 antisense CTB-178M22.2 1 OTTHUMG00000162964.1 +51025 chr5 HAVANA gene 167284799 168264157 11042.0 + 0 ENSG00000145934.16 protein_coding TENM2 1 OTTHUMG00000162928.4 overlapping_locus +51026 chr5 HAVANA gene 168291651 168472303 10076.0 + 0 ENSG00000113645.14 protein_coding WWC1 1 OTTHUMG00000130408.4 +51027 chr5 HAVANA gene 168486445 168519299 3421.0 + 0 ENSG00000113643.8 protein_coding RARS 2 OTTHUMG00000130411.3 +51028 chr5 HAVANA gene 168529116 168530634 1519.0 + 0 ENSG00000188573.7 protein_coding FBLL1 2 OTTHUMG00000157012.4 retrogene +51029 chr5 HAVANA gene 168552277 168553727 1451.0 - 0 ENSG00000253861.1 processed_pseudogene SLC2A3P1 2 OTTHUMG00000163047.1 overlapping_locus +51030 chr5 ENSEMBL gene 168560904 168560965 62.0 + 0 ENSG00000283612.1 miRNA MIR103B1 3 +51031 chr5 ENSEMBL gene 168560896 168560973 78.0 - 0 ENSG00000199035.2 miRNA MIR103A1 3 +51032 chr5 HAVANA gene 168548495 168579600 10580.0 - 0 ENSG00000120137.6 protein_coding PANK3 2 OTTHUMG00000130410.3 ncRNA_host,overlapping_locus +51033 chr5 HAVANA gene 168616352 168616996 645.0 + 0 ENSG00000233913.7 processed_pseudogene RPL10P9 2 OTTHUMG00000157935.1 +51034 chr5 HAVANA gene 168654513 168667761 810.0 + 0 ENSG00000254192.1 antisense AC011365.2 1 OTTHUMG00000163057.1 +51035 chr5 HAVANA gene 168706567 168720884 3478.0 + 0 ENSG00000254042.1 antisense AC011365.1 1 OTTHUMG00000163055.2 +51036 chr5 ENSEMBL gene 168768146 168768255 110.0 - 0 ENSG00000207739.1 miRNA MIR218-2 3 +51037 chr5 ENSEMBL gene 168791498 168791610 113.0 + 0 ENSG00000202345.1 misc_RNA RF00019 3 +51038 chr5 HAVANA gene 168993000 168995677 365.0 + 0 ENSG00000248965.1 antisense AC011389.2 1 OTTHUMG00000163056.1 +51039 chr5 HAVANA gene 169012148 169013146 999.0 - 0 ENSG00000279752.1 TEC AC011389.3 2 OTTHUMG00000163878.1 overlapping_locus +51040 chr5 HAVANA gene 169013227 169037998 3124.0 + 0 ENSG00000248222.5 antisense AC011389.1 1 OTTHUMG00000163054.3 +51041 chr5 ENSEMBL gene 169263601 169263694 94.0 - 0 ENSG00000207619.1 miRNA MIR585 3 +51042 chr5 HAVANA gene 168661733 169301129 14260.0 - 0 ENSG00000184347.14 protein_coding SLIT3 2 OTTHUMG00000130409.4 ncRNA_host,overlapping_locus +51043 chr5 ENSEMBL gene 169552449 169552555 107.0 + 0 ENSG00000206614.1 snRNA RNU6-477P 3 +51044 chr5 HAVANA gene 169583634 169604778 4777.0 + 0 ENSG00000040275.16 protein_coding SPDL1 1 OTTHUMG00000130438.6 +51045 chr5 HAVANA gene 169772966 169779365 283.0 - 0 ENSG00000253269.1 antisense AC008680.1 1 OTTHUMG00000163084.2 +51046 chr5 HAVANA gene 169864264 169980740 2999.0 - 0 ENSG00000204767.3 protein_coding INSYN2B 2 OTTHUMG00000163083.1 +51047 chr5 ENSEMBL gene 170028488 170028566 79.0 + 0 ENSG00000263831.1 miRNA MIR378E 3 +51048 chr5 HAVANA gene 169637247 170083382 12890.0 + 0 ENSG00000134516.16 protein_coding DOCK2 1 OTTHUMG00000130437.7 ncRNA_host +51049 chr5 HAVANA gene 170105897 170109725 2312.0 + 0 ENSG00000168269.9 protein_coding FOXI1 2 OTTHUMG00000130436.4 +51050 chr5 HAVANA gene 170140664 170141940 1277.0 - 0 ENSG00000253219.1 processed_pseudogene KRT18P41 1 OTTHUMG00000163085.1 pseudo_consens +51051 chr5 HAVANA gene 170191579 170199141 2314.0 - 0 ENSG00000249601.2 lincRNA LINC01187 2 OTTHUMG00000163086.1 +51052 chr5 HAVANA gene 170232447 170252575 3191.0 + 0 ENSG00000234511.9 protein_coding C5orf58 1 OTTHUMG00000163122.5 +51053 chr5 HAVANA gene 170246237 170298227 7244.0 - 0 ENSG00000043462.11 protein_coding LCP2 2 OTTHUMG00000163121.3 +51054 chr5 HAVANA gene 170308701 170312716 2182.0 - 0 ENSG00000250274.1 lincRNA AC034199.1 2 OTTHUMG00000163119.1 +51055 chr5 HAVANA gene 170331429 170333879 985.0 + 0 ENSG00000235172.7 lincRNA LINC01366 1 OTTHUMG00000163120.1 +51056 chr5 HAVANA gene 170374671 170389677 6079.0 - 0 ENSG00000145936.8 protein_coding KCNMB1 2 OTTHUMG00000130439.3 +51057 chr5 HAVANA gene 170389493 170422844 1215.0 + 0 ENSG00000253647.1 antisense CTD-2270F17.1 2 OTTHUMG00000163147.1 overlapping_locus +51058 chr5 HAVANA gene 170483806 170486407 567.0 - 0 ENSG00000253858.1 antisense AC008619.1 1 OTTHUMG00000163146.1 +51059 chr5 HAVANA gene 170639158 170681437 1571.0 - 0 ENSG00000253591.1 antisense AC027312.1 2 OTTHUMG00000163148.2 +51060 chr5 HAVANA gene 170353487 170736632 3351.0 + 0 ENSG00000182132.13 protein_coding KCNIP1 1 OTTHUMG00000130442.5 overlapping_locus +51061 chr5 HAVANA gene 170747047 170788650 1191.0 - 0 ENSG00000253348.1 antisense AC008514.1 1 OTTHUMG00000163164.2 +51062 chr5 HAVANA gene 170763350 170814047 4621.0 + 0 ENSG00000094755.16 protein_coding GABRP 1 OTTHUMG00000130443.4 +51063 chr5 ENSEMBL gene 170866835 170867144 310.0 + 0 ENSG00000244501.3 misc_RNA RN7SL623P 3 +51064 chr5 HAVANA gene 170896929 170904461 1337.0 + 0 ENSG00000253966.1 processed_pseudogene AC008514.2 1 OTTHUMG00000163204.1 pseudo_consens,overlapping_locus +51065 chr5 HAVANA gene 171251866 171252982 1117.0 + 0 ENSG00000253213.1 processed_pseudogene AC010306.1 1 OTTHUMG00000163202.1 pseudo_consens,overlapping_locus +51066 chr5 HAVANA gene 170861870 171300015 10965.0 + 0 ENSG00000204764.13 protein_coding RANBP17 1 OTTHUMG00000163203.4 ncRNA_host,overlapping_locus +51067 chr5 HAVANA gene 171305980 171309777 3056.0 - 0 ENSG00000275038.2 antisense AC091980.2 2 OTTHUMG00000166260.4 +51068 chr5 HAVANA gene 171309284 171312134 1493.0 + 0 ENSG00000164438.5 protein_coding TLX3 1 OTTHUMG00000163207.3 +51069 chr5 HAVANA gene 171345343 171345630 288.0 - 0 ENSG00000213393.5 processed_pseudogene AC091980.1 1 OTTHUMG00000157938.1 pseudo_consens +51070 chr5 ENSEMBL gene 171359117 171359412 296.0 + 0 ENSG00000265740.2 misc_RNA RN7SL339P 3 +51071 chr5 ENSEMBL gene 171366118 171366252 135.0 + 0 ENSG00000206909.1 snoRNA SNORA70J 3 +51072 chr5 HAVANA gene 171366299 171366611 313.0 + 0 ENSG00000254012.1 processed_pseudogene RPL10P8 1 OTTHUMG00000163205.1 pseudo_consens,overlapping_locus +51073 chr5 HAVANA gene 171365595 171367693 872.0 + 0 ENSG00000254256.1 processed_pseudogene RPSAP71 1 OTTHUMG00000163206.1 pseudo_consens,overlapping_locus +51074 chr5 ENSEMBL gene 171386656 171386760 105.0 - 0 ENSG00000264249.1 miRNA MIR3912 3 +51075 chr5 HAVANA gene 171387116 171411137 3828.0 + 0 ENSG00000181163.13 protein_coding NPM1 1 OTTHUMG00000130465.4 +51076 chr5 HAVANA gene 171419656 171457623 1986.0 + 0 ENSG00000156427.7 protein_coding FGF18 2 OTTHUMG00000130464.2 +51077 chr5 HAVANA gene 171724575 171737519 2752.0 - 0 ENSG00000285914.1 lincRNA AC022440.1 2 OTTHUMG00000192769.1 +51078 chr5 HAVANA gene 171773652 171774739 705.0 + 0 ENSG00000253110.1 lincRNA AC011410.1 1 OTTHUMG00000163264.1 +51079 chr5 HAVANA gene 171782432 171796126 1647.0 + 0 ENSG00000185662.9 protein_coding SMIM23 2 OTTHUMG00000163266.5 +51080 chr5 HAVANA gene 171861549 172006873 5577.0 - 0 ENSG00000072803.17 protein_coding FBXW11 2 OTTHUMG00000163267.3 +51081 chr5 HAVANA gene 172042073 172188386 9083.0 - 0 ENSG00000072786.12 protein_coding STK10 1 OTTHUMG00000163265.3 +51082 chr5 HAVANA gene 172194172 172203452 702.0 + 0 ENSG00000214360.4 protein_coding EFCAB9 2 OTTHUMG00000163271.1 +51083 chr5 ENSEMBL gene 172252334 172252478 145.0 - 0 ENSG00000212529.1 snoRNA RF00191 3 +51084 chr5 HAVANA gene 172254418 172255439 1022.0 - 0 ENSG00000253218.1 processed_pseudogene KLF3P1 2 OTTHUMG00000163278.1 overlapping_locus +51085 chr5 HAVANA gene 172209640 172284071 3301.0 - 0 ENSG00000168246.5 protein_coding UBTD2 2 OTTHUMG00000130519.1 ncRNA_host,overlapping_locus +51086 chr5 HAVANA gene 172325000 172454523 8242.0 - 0 ENSG00000174705.12 protein_coding SH3PXD2B 1 OTTHUMG00000163280.4 +51087 chr5 HAVANA gene 172557392 172559014 416.0 - 0 ENSG00000254299.1 lincRNA LINC01944 1 OTTHUMG00000163279.2 +51088 chr5 HAVANA gene 172609094 172609444 351.0 - 0 ENSG00000280318.1 TEC AC027309.3 2 OTTHUMG00000187257.1 +51089 chr5 HAVANA gene 172656522 172656713 192.0 - 0 ENSG00000253683.1 processed_pseudogene AC027309.2 2 OTTHUMG00000163291.1 +51090 chr5 ENSEMBL gene 172662165 172662263 99.0 + 0 ENSG00000265160.1 miRNA MIR5003 3 +51091 chr5 HAVANA gene 172641266 172691540 6424.0 + 0 ENSG00000214357.8 protein_coding NEURL1B 1 OTTHUMG00000163281.3 ncRNA_host +51092 chr5 HAVANA gene 172690454 172697720 528.0 - 0 ENSG00000253445.1 antisense AC027309.1 1 OTTHUMG00000163289.1 +51093 chr5 HAVANA gene 172758226 172762556 472.0 + 0 ENSG00000253295.1 antisense AC022217.2 2 OTTHUMG00000163290.1 +51094 chr5 HAVANA gene 172762521 172763258 738.0 - 0 ENSG00000213386.3 processed_pseudogene AC022217.1 1 OTTHUMG00000163292.1 pseudo_consens +51095 chr5 HAVANA gene 172768090 172771195 2019.0 - 0 ENSG00000120129.5 protein_coding DUSP1 2 OTTHUMG00000130523.3 +51096 chr5 ENSEMBL gene 172779982 172780094 113.0 - 0 ENSG00000206741.1 misc_RNA RF00019 3 +51097 chr5 HAVANA gene 172762980 172782334 837.0 + 0 ENSG00000253736.2 antisense AC022217.3 1 OTTHUMG00000163303.2 +51098 chr5 HAVANA gene 172785262 172785424 163.0 - 0 ENSG00000270243.1 processed_pseudogene AC022217.4 1 OTTHUMG00000184363.1 pseudo_consens +51099 chr5 HAVANA gene 172816621 172819958 582.0 + 0 ENSG00000253628.1 lincRNA AC110011.1 1 OTTHUMG00000163302.1 +51100 chr5 HAVANA gene 172834275 172952685 14139.0 + 0 ENSG00000113719.15 protein_coding ERGIC1 1 OTTHUMG00000130520.8 +51101 chr5 HAVANA gene 172954907 172957162 489.0 + 0 ENSG00000254295.1 lincRNA AC008429.3 1 OTTHUMG00000163301.1 +51102 chr5 HAVANA gene 172954786 172959392 2780.0 - 0 ENSG00000204758.7 antisense AC008429.1 2 OTTHUMG00000163304.1 +51103 chr5 HAVANA gene 172958729 172969771 1164.0 + 0 ENSG00000037241.7 protein_coding RPL26L1 2 OTTHUMG00000130517.5 +51104 chr5 HAVANA gene 172975511 172976374 864.0 + 0 ENSG00000253785.1 processed_pseudogene AC008429.2 1 OTTHUMG00000163310.1 pseudo_consens +51105 chr5 HAVANA gene 172986680 172987198 182.0 + 0 ENSG00000254328.1 processed_pseudogene AC008429.4 2 OTTHUMG00000163323.1 overlapping_locus +51106 chr5 ENSEMBL gene 173020728 173020928 201.0 + 0 ENSG00000212402.1 snoRNA SNORA74B 3 +51107 chr5 HAVANA gene 172983757 173035445 1623.0 + 0 ENSG00000113732.8 protein_coding ATP6V0E1 2 OTTHUMG00000130518.3 ncRNA_host,overlapping_locus +51108 chr5 ENSEMBL gene 173052452 173052555 104.0 - 0 ENSG00000207210.1 misc_RNA RF00019 3 +51109 chr5 HAVANA gene 173085342 173086210 553.0 - 0 ENSG00000253439.1 processed_pseudogene CDC42P5 1 OTTHUMG00000163321.1 pseudo_consens +51110 chr5 HAVANA gene 173056352 173139284 12333.0 + 0 ENSG00000164463.12 protein_coding CREBRF 1 OTTHUMG00000163322.3 +51111 chr5 HAVANA gene 173144162 173145039 496.0 - 0 ENSG00000253172.1 antisense AC008378.1 2 OTTHUMG00000163320.1 +51112 chr5 HAVANA gene 173144442 173164387 2440.0 + 0 ENSG00000113734.17 protein_coding BNIP1 1 OTTHUMG00000130521.4 +51113 chr5 HAVANA gene 173225836 173226423 588.0 - 0 ENSG00000254200.1 processed_pseudogene RPL7AP33 1 OTTHUMG00000157942.1 pseudo_consens +51114 chr5 HAVANA gene 173232109 173235357 2094.0 - 0 ENSG00000183072.9 protein_coding NKX2-5 1 OTTHUMG00000130522.5 +51115 chr5 ENSEMBL gene 173254190 173254290 101.0 - 0 ENSG00000201277.1 misc_RNA RF00019 3 +51116 chr5 ENSEMBL gene 173292517 173292619 103.0 - 0 ENSG00000252169.1 rRNA_pseudogene RNA5SP200 3 +51117 chr5 HAVANA gene 173314713 173329503 6128.0 - 0 ENSG00000113739.10 protein_coding STC2 1 OTTHUMG00000130542.4 +51118 chr5 ENSEMBL gene 173347455 173347536 82.0 + 0 ENSG00000274994.1 miRNA MIR8056 3 +51119 chr5 ENSEMBL gene 173362134 173362240 107.0 - 0 ENSG00000199219.1 snRNA RNU6-500P 3 +51120 chr5 HAVANA gene 173414035 173451165 539.0 + 0 ENSG00000253968.1 lincRNA AC016573.1 2 OTTHUMG00000163340.1 +51121 chr5 HAVANA gene 173463500 173484584 1169.0 + 0 ENSG00000253141.1 lincRNA AC008632.1 1 OTTHUMG00000163325.1 +51122 chr5 HAVANA gene 173562478 173573199 455.0 + 0 ENSG00000253768.1 lincRNA AC008663.1 2 OTTHUMG00000163338.1 +51123 chr5 HAVANA gene 173574938 173576275 457.0 + 0 ENSG00000254164.1 lincRNA AC008663.3 1 OTTHUMG00000163341.1 +51124 chr5 HAVANA gene 173579643 173585068 3014.0 + 0 ENSG00000253955.1 antisense AC008663.2 2 OTTHUMG00000163342.1 +51125 chr5 HAVANA gene 173607514 173616660 2018.0 - 0 ENSG00000145919.10 protein_coding BOD1 1 OTTHUMG00000130540.4 +51126 chr5 HAVANA gene 173642519 173658194 494.0 + 0 ENSG00000253959.1 lincRNA LINC01863 1 OTTHUMG00000163339.1 +51127 chr5 HAVANA gene 173689459 173705849 513.0 + 0 ENSG00000253428.1 lincRNA LINC01942 1 OTTHUMG00000163336.1 +51128 chr5 HAVANA gene 173707614 173746211 2815.0 - 0 ENSG00000253686.1 lincRNA LINC01484 1 OTTHUMG00000163343.1 +51129 chr5 HAVANA gene 173786790 173809039 1839.0 - 0 ENSG00000254211.5 lincRNA LINC01485 1 OTTHUMG00000163337.2 +51130 chr5 HAVANA gene 173888280 173961976 10272.0 + 0 ENSG00000113742.12 protein_coding CPEB4 1 OTTHUMG00000130541.5 +51131 chr5 HAVANA gene 173973779 174006140 2758.0 + 0 ENSG00000185056.9 protein_coding C5orf47 2 OTTHUMG00000163349.2 +51132 chr5 HAVANA gene 174039751 174040240 490.0 - 0 ENSG00000253109.1 processed_pseudogene RPL12P22 1 OTTHUMG00000157945.1 pseudo_consens +51133 chr5 HAVANA gene 174056060 174056585 289.0 - 0 ENSG00000253244.1 antisense AC113423.1 1 OTTHUMG00000163446.1 +51134 chr5 HAVANA gene 174081506 174086618 880.0 - 0 ENSG00000253447.6 antisense AC113423.2 2 OTTHUMG00000163447.2 +51135 chr5 HAVANA gene 174173101 174181814 436.0 + 0 ENSG00000254011.1 sense_intronic AC011333.1 1 OTTHUMG00000163130.1 overlapping_locus +51136 chr5 HAVANA gene 174045604 174243501 3946.0 + 0 ENSG00000170091.10 protein_coding NSG2 2 OTTHUMG00000130543.7 overlapping_locus +51137 chr5 HAVANA gene 174329612 174330503 558.0 + 0 ENSG00000249722.1 lincRNA AC025752.1 2 OTTHUMG00000163124.1 +51138 chr5 HAVANA gene 174513305 174514307 1003.0 + 0 ENSG00000213376.4 processed_pseudogene GAPDHP71 1 OTTHUMG00000159984.1 pseudo_consens,overlapping_locus +51139 chr5 HAVANA gene 174336295 174532457 3800.0 + 0 ENSG00000249306.5 lincRNA LINC01411 2 OTTHUMG00000163128.3 overlapping_locus +51140 chr5 HAVANA gene 174561776 174562063 288.0 + 0 ENSG00000249031.1 processed_pseudogene SUMO2P6 1 OTTHUMG00000163126.1 pseudo_consens +51141 chr5 HAVANA gene 174618164 174625775 659.0 + 0 ENSG00000250256.1 lincRNA AC108112.1 2 OTTHUMG00000163137.1 +51142 chr5 HAVANA gene 174632932 174633209 278.0 + 0 ENSG00000248929.1 processed_pseudogene HIGD1AP3 1 OTTHUMG00000163131.1 pseudo_consens +51143 chr5 HAVANA gene 174724533 174730893 2270.0 + 0 ENSG00000120149.8 protein_coding MSX2 1 OTTHUMG00000130556.5 +51144 chr5 ENSEMBL gene 174751734 174751787 54.0 + 0 ENSG00000266890.1 miRNA MIR4634 3 +51145 chr5 HAVANA gene 174820027 174826324 287.0 + 0 ENSG00000251144.1 lincRNA AC113346.1 1 OTTHUMG00000163136.1 overlapping_locus +51146 chr5 HAVANA gene 174751304 174850725 457.0 + 0 ENSG00000251670.1 lincRNA AC113346.2 2 OTTHUMG00000163129.1 ncRNA_host,overlapping_locus +51147 chr5 HAVANA gene 174923090 174923945 856.0 + 0 ENSG00000251122.1 processed_pseudogene NIFKP2 1 OTTHUMG00000163127.1 pseudo_consens +51148 chr5 HAVANA gene 174926541 174926717 177.0 + 0 ENSG00000248293.1 unprocessed_pseudogene AC008413.1 2 OTTHUMG00000163134.1 +51149 chr5 HAVANA gene 174986295 174987050 342.0 + 0 ENSG00000249403.1 lincRNA AC008413.2 2 OTTHUMG00000163132.1 +51150 chr5 HAVANA gene 174919082 174995513 1925.0 - 0 ENSG00000204754.3 lincRNA LINC01951 2 OTTHUMG00000163125.1 +51151 chr5 HAVANA gene 175290731 175291252 439.0 + 0 ENSG00000248355.1 processed_pseudogene ARL2BPP6 1 OTTHUMG00000163133.1 pseudo_consens +51152 chr5 HAVANA gene 175440039 175444208 4054.0 - 0 ENSG00000184845.3 protein_coding DRD1 2 OTTHUMG00000130557.2 +51153 chr5 HAVANA gene 175483595 175484192 598.0 - 0 ENSG00000270839.1 processed_pseudogene AC091393.1 1 OTTHUMG00000184371.1 pseudo_consens +51154 chr5 HAVANA gene 175477062 175529742 7572.0 + 0 ENSG00000164466.12 protein_coding SFXN1 2 OTTHUMG00000130555.5 +51155 chr5 ENSEMBL gene 175628188 175628462 275.0 + 0 ENSG00000222111.1 misc_RNA RN7SKP148 3 +51156 chr5 ENSEMBL gene 175703898 175704004 107.0 + 0 ENSG00000200648.1 snRNA RNU6-226P 3 +51157 chr5 HAVANA gene 175658030 175710756 5679.0 + 0 ENSG00000113749.7 protein_coding HRH2 2 OTTHUMG00000130660.4 ncRNA_host +51158 chr5 HAVANA gene 175796310 175884020 7099.0 + 0 ENSG00000145920.14 protein_coding CPLX2 2 OTTHUMG00000130665.3 +51159 chr5 HAVANA gene 175903874 175904371 498.0 - 0 ENSG00000280068.1 TEC AC138965.3 2 OTTHUMG00000163183.1 +51160 chr5 HAVANA gene 175906939 175958538 568.0 - 0 ENSG00000250820.1 sense_overlapping AC138965.2 2 OTTHUMG00000185647.1 overlapping_locus +51161 chr5 HAVANA gene 175972611 175985856 793.0 + 0 ENSG00000250801.1 antisense AC138965.1 2 OTTHUMG00000163180.1 +51162 chr5 HAVANA gene 176006145 176007387 931.0 + 0 ENSG00000272494.1 unprocessed_pseudogene OR1X1P 1 OTTHUMG00000185807.1 pseudo_consens +51163 chr5 HAVANA gene 175917873 176034680 3453.0 - 0 ENSG00000051596.9 protein_coding THOC3 2 OTTHUMG00000130658.2 overlapping_locus +51164 chr5 HAVANA gene 176040744 176042878 684.0 + 0 ENSG00000250992.1 antisense AC139491.3 2 OTTHUMG00000163179.1 +51165 chr5 HAVANA gene 176049678 176062021 1516.0 - 0 ENSG00000248469.1 antisense AC139491.1 2 OTTHUMG00000163185.2 +51166 chr5 HAVANA gene 176060689 176116015 5332.0 + 0 ENSG00000182230.12 protein_coding FAM153B 2 OTTHUMG00000163181.5 overlapping_locus +51167 chr5 HAVANA gene 176063748 176126959 4334.0 + 0 ENSG00000285476.1 protein_coding AC139491.7 2 OTTHUMG00000192424.1 overlapping_locus +51168 chr5 HAVANA gene 176124210 176131461 354.0 - 0 ENSG00000251458.1 lincRNA AC139491.4 2 OTTHUMG00000163189.1 +51169 chr5 HAVANA gene 176119545 176156937 4745.0 + 0 ENSG00000251623.2 transcribed_processed_pseudogene AC139491.5 2 OTTHUMG00000192425.1 semi_processed,overlapping_locus +51170 chr5 HAVANA gene 176143450 176156989 2254.0 - 0 ENSG00000283559.1 transcribed_unprocessed_pseudogene AC139491.6 2 OTTHUMG00000191787.1 overlapping_locus +51171 chr5 HAVANA gene 176143085 176185155 4206.0 - 0 ENSG00000248596.7 processed_transcript AC139491.2 2 OTTHUMG00000163191.3 overlapping_locus +51172 chr5 HAVANA gene 176173345 176199295 2436.0 - 0 ENSG00000283235.1 processed_transcript AC139493.2 2 OTTHUMG00000191788.1 overlapping_locus +51173 chr5 HAVANA gene 176203314 176203710 397.0 - 0 ENSG00000270989.1 processed_pseudogene AC139493.1 1 OTTHUMG00000184563.1 pseudo_consens +51174 chr5 HAVANA gene 176308063 176309013 951.0 + 0 ENSG00000251667.1 processed_pseudogene BRCC3P1 1 OTTHUMG00000163184.1 pseudo_consens,overlapping_locus +51175 chr5 HAVANA gene 176238367 176345991 5536.0 + 0 ENSG00000170085.17 protein_coding SIMC1 2 OTTHUMG00000130663.4 overlapping_locus +51176 chr5 HAVANA gene 176347941 176353584 504.0 + 0 ENSG00000250909.1 antisense AC138956.1 2 OTTHUMG00000163187.1 +51177 chr5 HAVANA gene 176354206 176356168 528.0 + 0 ENSG00000251414.1 antisense AC138956.2 2 OTTHUMG00000163188.1 +51178 chr5 HAVANA gene 176346061 176361968 3973.0 - 0 ENSG00000122203.14 protein_coding KIAA1191 2 OTTHUMG00000130656.4 +51179 chr5 ENSEMBL gene 176367946 176368031 86.0 + 0 ENSG00000221464.1 miRNA MIR1271 3 +51180 chr5 HAVANA gene 176383938 176388975 2862.0 - 0 ENSG00000048162.20 protein_coding NOP16 1 OTTHUMG00000163186.5 +51181 chr5 HAVANA gene 176388747 176389771 668.0 + 0 ENSG00000146066.2 protein_coding HIGD2A 2 OTTHUMG00000130657.1 overlapping_locus +51182 chr5 HAVANA gene 176365468 176401865 11459.0 + 0 ENSG00000175414.6 protein_coding ARL10 2 OTTHUMG00000130655.2 ncRNA_host,overlapping_locus +51183 chr5 HAVANA gene 176392455 176416569 2039.0 - 0 ENSG00000175416.12 protein_coding CLTB 2 OTTHUMG00000130662.3 +51184 chr5 HAVANA gene 176439090 176439238 149.0 + 0 ENSG00000280139.1 TEC AC010297.1 2 OTTHUMG00000173425.1 +51185 chr5 HAVANA gene 176447628 176510074 5954.0 + 0 ENSG00000113194.12 protein_coding FAF2 2 OTTHUMG00000163228.2 +51186 chr5 HAVANA gene 176526697 176538025 5660.0 - 0 ENSG00000146083.11 protein_coding RNF44 2 OTTHUMG00000130664.3 +51187 chr5 ENSEMBL gene 176547433 176547726 294.0 - 0 ENSG00000243959.3 misc_RNA RN7SL684P 3 +51188 chr5 ENSEMBL gene 176556704 176556805 102.0 + 0 ENSG00000207420.1 misc_RNA RF00019 3 +51189 chr5 HAVANA gene 176542511 176595974 5348.0 + 0 ENSG00000074276.10 protein_coding CDHR2 2 OTTHUMG00000163229.1 ncRNA_host +51190 chr5 HAVANA gene 176595802 176610133 4211.0 - 0 ENSG00000169258.6 protein_coding GPRIN1 2 OTTHUMG00000130659.1 +51191 chr5 ENSEMBL gene 176629439 176629500 62.0 - 0 ENSG00000266329.1 miRNA MIR4281 3 +51192 chr5 HAVANA gene 176620084 176630556 2006.0 - 0 ENSG00000074317.10 protein_coding SNCB 2 OTTHUMG00000130661.2 ncRNA_host +51193 chr5 HAVANA gene 176630618 176646641 3506.0 + 0 ENSG00000175766.12 protein_coding EIF4E1B 2 OTTHUMG00000163227.4 +51194 chr5 HAVANA gene 176647387 176659054 5215.0 + 0 ENSG00000048140.17 protein_coding TSPAN17 1 OTTHUMG00000163230.2 +51195 chr5 HAVANA gene 176707356 176726243 578.0 - 0 ENSG00000248484.1 lincRNA AC113391.1 2 OTTHUMG00000163224.1 +51196 chr5 HAVANA gene 176726942 176739458 553.0 - 0 ENSG00000251446.1 lincRNA AC113391.2 2 OTTHUMG00000163226.1 +51197 chr5 HAVANA gene 176743205 176743871 560.0 + 0 ENSG00000248859.2 lincRNA LINC01574 2 OTTHUMG00000163231.2 +51198 chr5 HAVANA gene 176810477 176880898 4359.0 + 0 ENSG00000113763.11 protein_coding UNC5A 1 OTTHUMG00000163225.3 +51199 chr5 HAVANA gene 176880869 176899332 3290.0 - 0 ENSG00000160883.10 protein_coding HK3 1 OTTHUMG00000130855.3 +51200 chr5 HAVANA gene 176905005 177022633 4739.0 - 0 ENSG00000087206.16 protein_coding UIMC1 2 OTTHUMG00000130852.4 +51201 chr5 HAVANA gene 177051714 177052963 745.0 + 0 ENSG00000251666.1 sense_intronic ZNF346-IT1 1 OTTHUMG00000163314.1 overlapping_locus +51202 chr5 HAVANA gene 177022696 177081189 4686.0 + 0 ENSG00000113761.11 protein_coding ZNF346 1 OTTHUMG00000130848.2 overlapping_locus +51203 chr5 HAVANA gene 177086886 177098144 4829.0 + 0 ENSG00000160867.14 protein_coding FGFR4 2 OTTHUMG00000151523.5 +51204 chr5 HAVANA gene 177264766 177265241 476.0 + 0 ENSG00000240729.1 processed_pseudogene AC146507.2 1 OTTHUMG00000157950.1 pseudo_consens,overlapping_locus +51205 chr5 HAVANA gene 177265580 177266588 1009.0 - 0 ENSG00000270706.1 processed_pseudogene PRMT1P1 1 OTTHUMG00000184564.1 pseudo_consens +51206 chr5 HAVANA gene 177133025 177300215 15242.0 + 0 ENSG00000165671.20 protein_coding NSD1 1 OTTHUMG00000130846.6 overlapping_locus +51207 chr5 HAVANA gene 177301198 177303744 2065.0 - 0 ENSG00000169228.13 protein_coding RAB24 2 OTTHUMG00000130849.5 overlapping_locus +51208 chr5 HAVANA gene 177303774 177306959 1875.0 + 0 ENSG00000169230.9 protein_coding PRELID1 1 OTTHUMG00000130847.3 +51209 chr5 HAVANA gene 177301461 177312757 5154.0 - 0 ENSG00000213347.10 protein_coding MXD3 2 OTTHUMG00000130854.3 overlapping_locus +51210 chr5 HAVANA gene 177346073 177346426 354.0 + 0 ENSG00000239393.1 processed_pseudogene AC146507.1 1 OTTHUMG00000157947.1 pseudo_consens +51211 chr5 HAVANA gene 177331562 177351852 2357.0 - 0 ENSG00000169223.14 protein_coding LMAN2 1 OTTHUMG00000130860.3 +51212 chr5 HAVANA gene 177357837 177372601 3797.0 + 0 ENSG00000169220.17 protein_coding RGS14 2 OTTHUMG00000163324.1 +51213 chr5 HAVANA gene 177379235 177398848 4529.0 + 0 ENSG00000131183.10 protein_coding SLC34A1 1 OTTHUMG00000130857.3 +51214 chr5 HAVANA gene 177400107 177400636 530.0 - 0 ENSG00000196570.2 protein_coding PFN3 2 OTTHUMG00000163408.1 +51215 chr5 HAVANA gene 177402140 177409576 2769.0 - 0 ENSG00000131187.9 protein_coding F12 2 OTTHUMG00000163403.1 +51216 chr5 HAVANA gene 177403204 177442901 4355.0 + 0 ENSG00000198055.10 protein_coding GRK6 1 OTTHUMG00000163401.4 +51217 chr5 HAVANA gene 177438503 177447699 1701.0 - 0 ENSG00000246334.2 antisense PRR7-AS1 2 OTTHUMG00000163400.1 +51218 chr5 HAVANA gene 177446445 177456286 1772.0 + 0 ENSG00000131188.11 protein_coding PRR7 2 OTTHUMG00000130861.4 +51219 chr5 HAVANA gene 177456608 177474401 5119.0 - 0 ENSG00000113758.13 protein_coding DBN1 1 OTTHUMG00000130856.7 +51220 chr5 HAVANA gene 177476631 177479656 3026.0 - 0 ENSG00000279821.1 TEC AC145098.2 2 OTTHUMG00000163397.1 +51221 chr5 HAVANA gene 177483394 177497606 4407.0 - 0 ENSG00000196923.13 protein_coding PDLIM7 2 OTTHUMG00000130853.10 +51222 chr5 HAVANA gene 177494995 177503647 434.0 + 0 ENSG00000248996.1 antisense AC145098.1 1 OTTHUMG00000163398.1 +51223 chr5 HAVANA gene 177501907 177511274 4821.0 - 0 ENSG00000146094.14 protein_coding DOK3 1 OTTHUMG00000130850.7 +51224 chr5 HAVANA gene 177511577 177517469 4536.0 - 0 ENSG00000183258.11 protein_coding DDX41 2 OTTHUMG00000130858.2 +51225 chr5 HAVANA gene 177519788 177554541 5804.0 - 0 ENSG00000146067.15 protein_coding FAM193B 1 OTTHUMG00000163396.5 +51226 chr5 HAVANA gene 177554824 177555364 541.0 + 0 ENSG00000272459.1 lincRNA AC139795.3 2 OTTHUMG00000185636.1 +51227 chr5 HAVANA gene 177592158 177596124 2440.0 + 0 ENSG00000184840.11 protein_coding TMED9 2 OTTHUMG00000130859.2 +51228 chr5 HAVANA gene 177600100 177610347 4927.0 + 0 ENSG00000027847.13 protein_coding B4GALT7 1 OTTHUMG00000130851.3 +51229 chr5 HAVANA gene 177611253 177619754 1751.0 + 0 ENSG00000247679.2 antisense AC139795.2 2 OTTHUMG00000163407.1 +51230 chr5 HAVANA gene 177619059 177672209 1691.0 - 0 ENSG00000246596.7 transcribed_unprocessed_pseudogene AC139795.1 2 OTTHUMG00000163399.2 +51231 chr5 HAVANA gene 177682294 177713969 431.0 + 0 ENSG00000249849.1 antisense AC138819.1 2 OTTHUMG00000163405.1 +51232 chr5 HAVANA gene 177707981 177783398 8528.0 - 0 ENSG00000170074.19 protein_coding FAM153A 2 OTTHUMG00000163394.4 +51233 chr5 HAVANA gene 177782197 177794396 1517.0 + 0 ENSG00000249109.1 antisense AC140125.2 2 OTTHUMG00000163404.1 +51234 chr5 HAVANA gene 177801204 177803344 684.0 - 0 ENSG00000248943.1 lincRNA AC140125.1 2 OTTHUMG00000163395.1 +51235 chr5 HAVANA gene 177836434 177837646 894.0 - 0 ENSG00000214351.5 unprocessed_pseudogene OR1X5P 2 OTTHUMG00000154337.1 +51236 chr5 HAVANA gene 177857945 177871194 793.0 - 0 ENSG00000249186.1 antisense AC140125.3 2 OTTHUMG00000163461.1 +51237 chr5 HAVANA gene 177809407 177950732 3852.0 + 0 ENSG00000170089.15 transcribed_unprocessed_pseudogene AC106795.1 2 OTTHUMG00000163406.3 overlapping_locus +51238 chr5 HAVANA gene 177950335 177963960 1421.0 + 0 ENSG00000249684.5 antisense AC106795.2 2 OTTHUMG00000163453.1 overlapping_locus +51239 chr5 HAVANA gene 177967004 177967457 454.0 + 0 ENSG00000280207.1 lincRNA AC106795.5 2 OTTHUMG00000163454.1 overlapping_locus +51240 chr5 HAVANA gene 177971316 177972281 966.0 + 0 ENSG00000249129.1 processed_pseudogene SUDS3P1 1 OTTHUMG00000163458.2 pseudo_consens,overlapping_locus +51241 chr5 HAVANA gene 177939622 177983054 547.0 + 0 ENSG00000250101.1 lincRNA AC106795.3 2 OTTHUMG00000163457.1 overlapping_locus +51242 chr5 HAVANA gene 177992235 177996242 1464.0 - 0 ENSG00000175325.2 protein_coding PROP1 2 OTTHUMG00000130887.1 +51243 chr5 HAVANA gene 178006405 178055559 4285.0 + 0 ENSG00000204677.10 protein_coding FAM153C 2 OTTHUMG00000163459.2 +51244 chr5 HAVANA gene 178055604 178056194 591.0 + 0 ENSG00000218227.3 processed_pseudogene AC136632.1 1 OTTHUMG00000157953.1 pseudo_consens +51245 chr5 HAVANA gene 178113443 178126087 6080.0 + 0 ENSG00000145911.5 protein_coding N4BP3 2 OTTHUMG00000163456.2 +51246 chr5 HAVANA gene 178130996 178150565 7701.0 + 0 ENSG00000145916.18 protein_coding RMND5B 2 OTTHUMG00000130897.3 +51247 chr5 HAVANA gene 178149460 178153967 1510.0 - 0 ENSG00000145912.8 protein_coding NHP2 2 OTTHUMG00000130886.5 +51248 chr5 HAVANA gene 178165702 178166562 861.0 + 0 ENSG00000251211.1 processed_pseudogene AC136632.2 1 OTTHUMG00000163455.1 pseudo_consens +51249 chr5 HAVANA gene 178184503 178187432 2930.0 - 0 ENSG00000244234.2 protein_coding GMCL2 2 OTTHUMG00000130894.5 retrogene +51250 chr5 HAVANA gene 178204507 178211163 2144.0 + 0 ENSG00000197451.11 protein_coding HNRNPAB 2 OTTHUMG00000163452.1 +51251 chr5 HAVANA gene 178208497 178232791 8402.0 - 0 ENSG00000175309.14 protein_coding PHYKPL 1 OTTHUMG00000130892.5 +51252 chr5 HAVANA gene 178344843 178345316 474.0 + 0 ENSG00000271681.1 processed_pseudogene AC136601.2 1 OTTHUMG00000184528.1 pseudo_consens +51253 chr5 HAVANA gene 178350867 178352250 666.0 + 0 ENSG00000253698.1 antisense AC136601.1 1 OTTHUMG00000163571.1 +51254 chr5 ENSEMBL gene 178377924 178378220 297.0 + 0 ENSG00000242341.3 misc_RNA RN7SL646P 3 +51255 chr5 HAVANA gene 178438681 178443094 1458.0 - 0 ENSG00000245688.1 sense_intronic AC008659.1 1 OTTHUMG00000163611.1 overlapping_locus +51256 chr5 HAVANA gene 178237618 178590555 3586.0 - 0 ENSG00000050767.16 protein_coding COL23A1 1 OTTHUMG00000130890.4 overlapping_locus +51257 chr5 ENSEMBL gene 178619728 178619998 271.0 - 0 ENSG00000252464.1 misc_RNA RN7SKP70 3 +51258 chr5 HAVANA gene 178602664 178630615 7924.0 - 0 ENSG00000113240.12 protein_coding CLK4 2 OTTHUMG00000130893.3 ncRNA_host +51259 chr5 HAVANA gene 178694605 178697695 850.0 - 0 ENSG00000285891.1 protein_coding AC113348.1 2 OTTHUMG00000192652.1 overlapping_locus +51260 chr5 HAVANA gene 178694605 178729335 1653.0 - 0 ENSG00000285978.1 protein_coding AC113348.2 2 OTTHUMG00000130895.4 overlapping_locus +51261 chr5 HAVANA gene 178711592 178730702 2947.0 - 0 ENSG00000169131.12 protein_coding ZNF354A 2 OTTHUMG00000192653.1 overlapping_locus +51262 chr5 HAVANA gene 178764861 178818435 3380.0 - 0 ENSG00000250420.8 transcribed_unprocessed_pseudogene AACSP1 2 OTTHUMG00000163584.3 +51263 chr5 HAVANA gene 178825382 178825571 190.0 + 0 ENSG00000274813.1 unprocessed_pseudogene AC126915.2 2 OTTHUMG00000187645.1 +51264 chr5 HAVANA gene 178840097 178841134 1038.0 + 0 ENSG00000253725.1 processed_pseudogene AC126915.1 1 OTTHUMG00000163581.1 pseudo_consens +51265 chr5 HAVANA gene 178842028 178842235 208.0 - 0 ENSG00000278441.1 processed_pseudogene AC126915.3 2 OTTHUMG00000187646.1 +51266 chr5 ENSEMBL gene 178884715 178884879 165.0 + 0 ENSG00000206624.1 snRNA RNU1-39P 3 +51267 chr5 HAVANA gene 178859953 178888122 3750.0 + 0 ENSG00000178338.10 protein_coding ZNF354B 1 OTTHUMG00000130896.4 ncRNA_host +51268 chr5 HAVANA gene 178909710 178910609 900.0 - 0 ENSG00000213328.3 processed_pseudogene AC104117.1 1 OTTHUMG00000163583.1 pseudo_consens +51269 chr5 HAVANA gene 178922064 178922716 653.0 + 0 ENSG00000253869.1 processed_pseudogene PIGFP1 1 OTTHUMG00000163582.1 pseudo_consens,overlapping_locus +51270 chr5 HAVANA gene 178895894 178933212 2641.0 + 0 ENSG00000198939.7 protein_coding ZFP2 2 OTTHUMG00000130885.5 overlapping_locus +51271 chr5 HAVANA gene 178938677 178939223 547.0 - 0 ENSG00000272431.1 lincRNA AC104117.5 2 OTTHUMG00000185637.1 +51272 chr5 HAVANA gene 178941191 178966433 2662.0 + 0 ENSG00000178187.7 protein_coding ZNF454 2 OTTHUMG00000130891.2 +51273 chr5 HAVANA gene 178969390 178990116 674.0 + 0 ENSG00000254035.1 antisense AC104117.3 1 OTTHUMG00000163579.1 +51274 chr5 HAVANA gene 178977587 178996206 8282.0 - 0 ENSG00000113262.15 protein_coding GRM6 2 OTTHUMG00000130889.5 +51275 chr5 HAVANA gene 178997969 178998815 847.0 - 0 ENSG00000254158.1 processed_pseudogene AC104117.4 1 OTTHUMG00000163578.1 pseudo_consens +51276 chr5 HAVANA gene 179023752 179035064 3883.0 + 0 ENSG00000234284.6 protein_coding ZNF879 1 OTTHUMG00000163596.2 +51277 chr5 HAVANA gene 179082680 179083194 515.0 - 0 ENSG00000253144.1 processed_pseudogene AC104117.2 2 OTTHUMG00000163598.2 +51278 chr5 HAVANA gene 179060415 179083537 5411.0 + 0 ENSG00000177932.6 protein_coding ZNF354C 2 OTTHUMG00000130888.2 +51279 chr5 HAVANA gene 179110851 179345430 8726.0 - 0 ENSG00000087116.15 protein_coding ADAMTS2 2 OTTHUMG00000130915.6 +51280 chr5 HAVANA gene 179377531 179378761 624.0 - 0 ENSG00000253163.1 lincRNA AC109479.1 1 OTTHUMG00000163595.1 +51281 chr5 HAVANA gene 179377505 179378865 360.0 + 0 ENSG00000253979.1 lincRNA AC109479.3 2 OTTHUMG00000163594.1 +51282 chr5 HAVANA gene 179385819 179385992 174.0 - 0 ENSG00000253617.2 processed_pseudogene AC109479.2 2 OTTHUMG00000163597.2 +51283 chr5 HAVANA gene 179455415 179456095 561.0 + 0 ENSG00000250674.1 lincRNA AC136628.1 2 OTTHUMG00000163201.1 +51284 chr5 ENSEMBL gene 179492076 179492157 82.0 - 0 ENSG00000274716.1 snRNA RF00015 3 +51285 chr5 HAVANA gene 179503322 179515579 535.0 - 0 ENSG00000253652.1 lincRNA AC136628.4 1 OTTHUMG00000163567.1 +51286 chr5 HAVANA gene 179522457 179525074 1142.0 + 0 ENSG00000251545.2 unprocessed_pseudogene AC136628.2 2 OTTHUMG00000163210.2 +51287 chr5 HAVANA gene 179527224 179527513 290.0 - 0 ENSG00000253520.1 processed_pseudogene AC136628.3 1 OTTHUMG00000163568.1 pseudo_consens +51288 chr5 HAVANA gene 179572156 179572741 586.0 + 0 ENSG00000249140.1 processed_pseudogene PRDX2P3 1 OTTHUMG00000163176.2 pseudo_consens,overlapping_locus +51289 chr5 HAVANA gene 179595904 179603741 1966.0 - 0 ENSG00000244945.1 antisense AC136604.2 2 OTTHUMG00000163175.1 +51290 chr5 HAVANA gene 179550558 179610026 5911.0 + 0 ENSG00000176783.14 protein_coding RUFY1 1 OTTHUMG00000130913.10 overlapping_locus +51291 chr5 ENSEMBL gene 179629151 179629410 260.0 + 0 ENSG00000273549.1 misc_RNA RF00017 3 +51292 chr5 HAVANA gene 179614178 179634784 9480.0 - 0 ENSG00000169045.17 protein_coding HNRNPH1 1 OTTHUMG00000130908.43 +51293 chr5 HAVANA gene 179641544 179645046 3284.0 - 0 ENSG00000204661.9 protein_coding C5orf60 2 OTTHUMG00000163221.5 +51294 chr5 HAVANA gene 179651284 179652457 951.0 + 0 ENSG00000228259.3 unprocessed_pseudogene AC136604.1 2 OTTHUMG00000187266.2 +51295 chr5 HAVANA gene 179657762 179664432 821.0 + 0 ENSG00000250999.1 antisense AC136604.3 2 OTTHUMG00000163211.3 +51296 chr5 HAVANA gene 179678583 179680974 785.0 - 0 ENSG00000204659.4 protein_coding CBY3 2 OTTHUMG00000163163.2 +51297 chr5 HAVANA gene 179679032 179694768 825.0 + 0 ENSG00000225051.5 transcribed_processed_pseudogene HMGB3P22 1 OTTHUMG00000163166.2 pseudo_consens,overlapping_locus +51298 chr5 HAVANA gene 179678628 179730925 6235.0 + 0 ENSG00000127022.14 protein_coding CANX 1 OTTHUMG00000130910.12 overlapping_locus +51299 chr5 HAVANA gene 179732850 179777286 5942.0 + 0 ENSG00000161021.12 protein_coding MAML1 2 OTTHUMG00000163237.3 overlapping_locus +51300 chr5 HAVANA gene 179793980 179796647 1192.0 + 0 ENSG00000213316.9 protein_coding LTC4S 1 OTTHUMG00000150314.5 overlapping_locus +51301 chr5 ENSEMBL gene 179798278 179798346 69.0 - 0 ENSG00000221394.1 miRNA MIR1229 3 +51302 chr5 HAVANA gene 179797597 179806952 5495.0 - 0 ENSG00000161013.16 protein_coding MGAT4B 1 OTTHUMG00000130912.6 ncRNA_host +51303 chr5 HAVANA gene 179806398 179838078 7654.0 + 0 ENSG00000161011.19 protein_coding SQSTM1 2 OTTHUMG00000150643.79 +51304 chr5 ENSEMBL gene 179845832 179846152 321.0 + 0 ENSG00000222448.1 misc_RNA RN7SKP150 3 +51305 chr5 ENSEMBL gene 179847035 179847130 96.0 - 0 ENSG00000252202.1 misc_RNA RF00019 3 +51306 chr5 HAVANA gene 179859013 179861283 1454.0 + 0 ENSG00000245317.2 lincRNA AC008393.1 1 OTTHUMG00000163262.1 +51307 chr5 HAVANA gene 179835133 179862173 8496.0 - 0 ENSG00000161010.14 protein_coding MRNIP 2 OTTHUMG00000163490.7 ncRNA_host,overlapping_locus +51308 chr5 HAVANA gene 179862066 179907859 11473.0 - 0 ENSG00000197226.12 protein_coding TBC1D9B 2 OTTHUMG00000130911.9 overlapping_locus +51309 chr5 HAVANA gene 179933805 179934196 392.0 - 0 ENSG00000242979.1 processed_pseudogene RPS15AP18 1 OTTHUMG00000157956.1 pseudo_consens,overlapping_locus +51310 chr5 HAVANA gene 179939457 179940132 676.0 - 0 ENSG00000249876.1 processed_pseudogene AC010285.2 1 OTTHUMG00000163489.1 pseudo_consens,overlapping_locus +51311 chr5 HAVANA gene 179963615 179964419 569.0 + 0 ENSG00000249412.1 antisense AC010285.1 1 OTTHUMG00000163263.1 +51312 chr5 HAVANA gene 179974584 179980186 2015.0 + 0 ENSG00000285865.1 antisense AC010285.3 2 OTTHUMG00000192713.1 +51313 chr5 ENSEMBL gene 180015303 180015397 95.0 - 0 ENSG00000198995.3 miRNA MIR340 3 +51314 chr5 HAVANA gene 179911651 180072118 12822.0 - 0 ENSG00000113269.13 protein_coding RNF130 1 OTTHUMG00000130909.6 ncRNA_host,overlapping_locus +51315 chr5 HAVANA gene 180078357 180081691 3335.0 - 0 ENSG00000278965.1 TEC AC122713.2 2 OTTHUMG00000173433.1 +51316 chr5 HAVANA gene 180085717 180087038 1015.0 - 0 ENSG00000253480.1 processed_pseudogene AC122713.1 1 OTTHUMG00000163507.1 pseudo_consens +51317 chr5 HAVANA gene 180100791 180209153 2961.0 - 0 ENSG00000146090.15 protein_coding RASGEF1C 2 OTTHUMG00000130914.7 +51318 chr5 HAVANA gene 180226378 180227000 623.0 - 0 ENSG00000229721.3 processed_pseudogene AC104115.1 1 OTTHUMG00000157961.1 pseudo_consens +51319 chr5 HAVANA gene 180257680 180258366 687.0 + 0 ENSG00000253908.1 processed_pseudogene AC104115.2 2 OTTHUMG00000163508.1 +51320 chr5 HAVANA gene 180233143 180292099 8955.0 - 0 ENSG00000050748.17 protein_coding MAPK9 1 OTTHUMG00000130934.9 +51321 chr5 HAVANA gene 180293245 180295253 393.0 + 0 ENSG00000248367.1 antisense AC008610.1 1 OTTHUMG00000163311.1 +51322 chr5 HAVANA gene 180300690 180353387 4780.0 - 0 ENSG00000131459.12 protein_coding GFPT2 2 OTTHUMG00000163442.5 +51323 chr5 HAVANA gene 180441559 180443238 806.0 + 0 ENSG00000250509.1 lincRNA AC034213.1 2 OTTHUMG00000163288.1 +51324 chr5 ENSEMBL gene 180444509 180444612 104.0 + 0 ENSG00000200555.1 snRNA RNU6-525P 3 +51325 chr5 HAVANA gene 180534184 180534642 459.0 - 0 ENSG00000250749.1 processed_pseudogene AC122714.1 1 OTTHUMG00000163293.1 pseudo_consens +51326 chr5 HAVANA gene 180494412 180578405 6586.0 + 0 ENSG00000113300.11 protein_coding CNOT6 1 OTTHUMG00000130935.3 +51327 chr5 HAVANA gene 180590103 180591540 846.0 - 0 ENSG00000161055.3 protein_coding SCGB3A1 2 OTTHUMG00000130936.3 +51328 chr5 HAVANA gene 180601506 180649624 8852.0 - 0 ENSG00000037280.15 protein_coding FLT4 2 OTTHUMG00000130931.7 +51329 chr5 HAVANA gene 180671892 180672598 707.0 - 0 ENSG00000251352.1 processed_pseudogene AC122714.2 2 OTTHUMG00000163294.1 +51330 chr5 HAVANA gene 180684766 180686546 1039.0 + 0 ENSG00000248717.1 lincRNA LINC02222 1 OTTHUMG00000163295.1 +51331 chr5 HAVANA gene 180692832 180693763 932.0 - 0 ENSG00000236791.2 unprocessed_pseudogene OR2AI1P 2 OTTHUMG00000163300.1 +51332 chr5 ENSEMBL gene 180729586 180729737 152.0 + 0 ENSG00000199892.2 snRNA RNU1-17P 3 +51333 chr5 HAVANA gene 180739042 180740099 1058.0 - 0 ENSG00000174339.2 protein_coding OR2Y1 2 OTTHUMG00000162237.2 +51334 chr5 HAVANA gene 180810401 180811384 984.0 + 0 ENSG00000280161.1 TEC AC022413.1 2 OTTHUMG00000162253.1 +51335 chr5 HAVANA gene 180784782 180815652 11576.0 - 0 ENSG00000131446.16 protein_coding MGAT1 1 OTTHUMG00000130937.6 retrogene +51336 chr5 HAVANA gene 180829954 180831605 1652.0 - 0 ENSG00000278970.1 TEC HEIH 2 OTTHUMG00000162271.1 +51337 chr5 HAVANA gene 180830957 180835726 2453.0 + 0 ENSG00000245060.6 lincRNA LINC00847 1 OTTHUMG00000162270.2 +51338 chr5 HAVANA gene 180847611 180861285 4197.0 - 0 ENSG00000196670.13 protein_coding ZFP62 2 OTTHUMG00000162273.4 +51339 chr5 ENSEMBL gene 180909838 180909927 90.0 + 0 ENSG00000222852.1 misc_RNA RF00019 3 +51340 chr5 HAVANA gene 180945756 180945907 152.0 + 0 ENSG00000243664.1 processed_pseudogene RPS29P12 1 OTTHUMG00000157973.1 pseudo_consens,overlapping_locus +51341 chr5 HAVANA gene 180899077 180950906 3924.0 + 0 ENSG00000113303.11 protein_coding BTNL8 2 OTTHUMG00000130932.2 ncRNA_host,overlapping_locus +51342 chr5 HAVANA gene 180967848 180968567 720.0 + 0 ENSG00000248761.1 processed_pseudogene AC091874.2 1 OTTHUMG00000162082.2 pseudo_consens +51343 chr5 HAVANA gene 180967189 180970762 1195.0 - 0 ENSG00000249287.1 processed_pseudogene AC091874.3 1 OTTHUMG00000162083.1 pseudo_consens +51344 chr5 HAVANA gene 180982273 180982611 339.0 + 0 ENSG00000231228.4 processed_pseudogene AC091874.1 1 OTTHUMG00000162090.1 pseudo_consens +51345 chr5 HAVANA gene 180988845 181006727 2440.0 + 0 ENSG00000168903.8 protein_coding BTNL3 2 OTTHUMG00000162091.2 +51346 chr5 ENSEMBL gene 181007281 181007384 104.0 + 0 ENSG00000206686.1 snRNA RNU6-1036P 3 +51347 chr5 ENSEMBL gene 181043403 181043484 82.0 - 0 ENSG00000277912.1 miRNA MIR8089 3 +51348 chr5 HAVANA gene 181040225 181061523 5565.0 + 0 ENSG00000165810.16 protein_coding BTNL9 1 OTTHUMG00000133152.4 +51349 chr5 HAVANA gene 181065086 181065677 592.0 + 0 ENSG00000241870.1 processed_pseudogene AC008620.1 1 OTTHUMG00000157968.1 pseudo_consens +51350 chr5 HAVANA gene 181099140 181100666 1527.0 - 0 ENSG00000214295.4 processed_pseudogene FOXO1B 1 OTTHUMG00000162117.2 pseudo_consens +51351 chr5 HAVANA gene 181114106 181115674 1569.0 + 0 ENSG00000248560.1 processed_pseudogene AC008620.2 1 OTTHUMG00000162100.1 pseudo_consens +51352 chr5 HAVANA gene 181123122 181131169 2785.0 - 0 ENSG00000185372.3 protein_coding OR2V1 2 OTTHUMG00000162118.4 +51353 chr5 HAVANA gene 181147586 181159285 4777.0 + 0 ENSG00000182613.2 protein_coding OR2V2 2 OTTHUMG00000130933.3 +51354 chr5 HAVANA gene 181191046 181191852 411.0 - 0 ENSG00000248473.1 lincRNA LINC01962 1 OTTHUMG00000162379.1 +51355 chr5 HAVANA gene 181191924 181194429 486.0 + 0 ENSG00000250222.1 antisense AC008443.4 1 OTTHUMG00000163004.1 +51356 chr5 HAVANA gene 181195496 181203103 1484.0 + 0 ENSG00000250900.6 antisense AC008443.5 1 OTTHUMG00000163005.3 +51357 chr5 HAVANA gene 181193924 181205293 7338.0 - 0 ENSG00000146054.17 protein_coding TRIM7 2 OTTHUMG00000130963.7 +51358 chr5 HAVANA gene 181205361 181206120 456.0 - 0 ENSG00000248514.1 antisense AC008443.3 1 OTTHUMG00000162378.1 +51359 chr5 ENSEMBL gene 181222566 181222633 68.0 - 0 ENSG00000264732.1 miRNA MIR4638 3 +51360 chr5 HAVANA gene 181224646 181230685 566.0 - 0 ENSG00000247049.2 antisense AC008443.1 2 OTTHUMG00000163016.1 +51361 chr5 HAVANA gene 181222499 181235809 12803.0 + 0 ENSG00000146063.19 protein_coding TRIM41 1 OTTHUMG00000130965.9 +51362 chr5 ENSEMBL gene 181241814 181241892 79.0 - 0 ENSG00000272296.1 snoRNA SNORD96A 3 +51363 chr5 ENSEMBL gene 181243312 181243379 68.0 - 0 ENSG00000264549.1 snoRNA SNORD95 3 +51364 chr5 HAVANA gene 181236909 181248096 5990.0 - 0 ENSG00000204628.11 protein_coding RACK1 1 OTTHUMG00000163380.14 ncRNA_host +51365 chr5 HAVANA gene 181254417 181261139 6562.0 - 0 ENSG00000183718.5 protein_coding TRIM52 1 OTTHUMG00000130964.7 +51366 chr5 HAVANA gene 181246523 181272167 3312.0 + 0 ENSG00000233937.6 processed_transcript CTC-338M12.4 1 OTTHUMG00000163003.3 overlapping_locus +51367 chr5 HAVANA gene 181261212 181272307 1316.0 + 0 ENSG00000248275.1 processed_transcript TRIM52-AS1 1 OTTHUMG00000163002.4 overlapping_locus +51368 chr5 HAVANA gene 181281375 181283652 549.0 + 0 ENSG00000248103.1 lincRNA AC008443.2 1 OTTHUMG00000163377.1 +51369 chr5 HAVANA gene 181291673 181295572 246.0 + 0 ENSG00000274525.1 unprocessed_pseudogene AC008443.6 1 OTTHUMG00000187650.1 pseudo_consens +51370 chr5 ENSEMBL gene 181301967 181302070 104.0 + 0 ENSG00000222533.1 snRNA RNU6-705P 3 +51371 chr5 HAVANA gene 181306502 181324685 1838.0 + 0 ENSG00000238035.8 lincRNA AC138035.1 2 OTTHUMG00000184458.1 +51372 chr5 HAVANA gene 181329049 181331839 2791.0 - 0 ENSG00000274553.1 processed_pseudogene AC138035.3 1 OTTHUMG00000187652.1 pseudo_consens +51373 chr5 HAVANA gene 181329241 181342213 727.0 + 0 ENSG00000250765.6 lincRNA AC138035.2 2 OTTHUMG00000162985.1 +51374 chr5 HAVANA gene 181367268 181368262 995.0 + 0 ENSG00000230178.1 protein_coding OR4F3 2 OTTHUMG00000162081.1 +51375 chr5 HAVANA gene 181378695 181379038 344.0 - 0 ENSG00000251035.1 processed_pseudogene WBP1LP4 1 OTTHUMG00000162075.1 pseudo_consens +51376 chr5 HAVANA gene 181471963 181472430 468.0 + 0 ENSG00000213285.4 processed_pseudogene RPL23AP45 1 OTTHUMG00000157971.1 pseudo_consens +51377 chr6 HAVANA gene 95124 95454 331.0 + 0 ENSG00000271530.1 processed_pseudogene WBP1LP12 1 OTTHUMG00000184610.1 pseudo_consens +51378 chr6 HAVANA gene 105919 106856 938.0 - 0 ENSG00000220212.1 unprocessed_pseudogene OR4F1P 2 OTTHUMG00000014107.1 +51379 chr6 HAVANA gene 131910 145083 3189.0 - 0 ENSG00000217929.4 transcribed_processed_pseudogene CICP18 2 OTTHUMG00000014108.4 +51380 chr6 HAVANA gene 167607 170631 709.0 - 0 ENSG00000218577.1 unprocessed_pseudogene AL035696.2 2 OTTHUMG00000014112.1 +51381 chr6 HAVANA gene 184339 186899 2427.0 + 0 ENSG00000285578.1 lincRNA AL035696.4 2 OTTHUMG00000192927.1 +51382 chr6 HAVANA gene 181466 205484 2050.0 - 0 ENSG00000263667.1 lincRNA AL035696.3 2 OTTHUMG00000179310.1 +51383 chr6 HAVANA gene 203313 206392 2007.0 + 0 ENSG00000205653.2 lincRNA AL035696.1 2 OTTHUMG00000179311.2 +51384 chr6 HAVANA gene 291630 351355 5686.0 + 0 ENSG00000112679.14 protein_coding DUSP22 2 OTTHUMG00000014113.4 +51385 chr6 HAVANA gene 391739 411447 5898.0 + 0 ENSG00000137265.14 protein_coding IRF4 2 OTTHUMG00000016294.4 +51386 chr6 HAVANA gene 524171 525581 851.0 + 0 ENSG00000230433.1 antisense AL031770.1 2 OTTHUMG00000014117.2 +51387 chr6 HAVANA gene 655939 656963 1025.0 - 0 ENSG00000188996.4 protein_coding HUS1B 2 OTTHUMG00000090059.2 overlapping_locus,retrogene +51388 chr6 HAVANA gene 669081 670307 1227.0 - 0 ENSG00000219712.1 processed_pseudogene AL357054.1 1 OTTHUMG00000014116.1 pseudo_consens,overlapping_locus +51389 chr6 HAVANA gene 485133 693111 4983.0 - 0 ENSG00000112685.13 protein_coding EXOC2 2 OTTHUMG00000137437.3 overlapping_locus +51390 chr6 HAVANA gene 708592 711405 2814.0 - 0 ENSG00000272463.1 lincRNA AL357054.4 2 OTTHUMG00000185335.1 +51391 chr6 HAVANA gene 711533 750729 423.0 + 0 ENSG00000271727.1 lincRNA AL357054.2 2 OTTHUMG00000185336.1 +51392 chr6 HAVANA gene 774747 780214 2436.0 - 0 ENSG00000272485.1 lincRNA AL392183.1 2 OTTHUMG00000185338.1 +51393 chr6 HAVANA gene 761675 780648 2055.0 + 0 ENSG00000271911.1 lincRNA AL357054.3 2 OTTHUMG00000185337.1 +51394 chr6 HAVANA gene 905445 909006 1965.0 - 0 ENSG00000276687.1 lincRNA AL356130.1 2 OTTHUMG00000175868.2 +51395 chr6 HAVANA gene 958324 962272 404.0 - 0 ENSG00000278343.1 lincRNA AL356130.2 2 OTTHUMG00000014118.2 +51396 chr6 HAVANA gene 1026494 1027225 732.0 - 0 ENSG00000270937.1 lincRNA AL033381.2 2 OTTHUMG00000185141.1 +51397 chr6 HAVANA gene 1079929 1104946 3435.0 + 0 ENSG00000176515.1 lincRNA AL033381.1 2 OTTHUMG00000187086.1 +51398 chr6 HAVANA gene 1312440 1314748 2309.0 + 0 ENSG00000164379.6 protein_coding FOXQ1 2 OTTHUMG00000016160.2 +51399 chr6 HAVANA gene 1321698 1324022 413.0 - 0 ENSG00000281809.1 lincRNA LINC01394 2 OTTHUMG00000189510.1 +51400 chr6 HAVANA gene 1383790 1385066 1277.0 - 0 ENSG00000261730.1 antisense AL034346.1 2 OTTHUMG00000175869.1 +51401 chr6 ENSEMBL gene 1390314 1390411 98.0 - 0 ENSG00000275859.1 miRNA MIR6720 3 +51402 chr6 HAVANA gene 1389576 1395603 2451.0 + 0 ENSG00000137273.5 protein_coding FOXF2 2 OTTHUMG00000016243.3 +51403 chr6 ENSEMBL gene 1507322 1507598 277.0 + 0 ENSG00000243439.3 misc_RNA RN7SL352P 3 +51404 chr6 HAVANA gene 1513698 1515289 1592.0 - 0 ENSG00000218027.2 processed_pseudogene AL512329.1 1 OTTHUMG00000014119.2 pseudo_consens +51405 chr6 HAVANA gene 1528364 1528911 548.0 - 0 ENSG00000272279.1 lincRNA AL512329.2 2 OTTHUMG00000185644.1 +51406 chr6 HAVANA gene 1605531 1606079 333.0 + 0 ENSG00000280916.1 lincRNA FOXCUT 2 OTTHUMG00000189532.1 +51407 chr6 HAVANA gene 1609972 1613897 3926.0 + 0 ENSG00000054598.7 protein_coding FOXC1 2 OTTHUMG00000016182.2 +51408 chr6 HAVANA gene 2227803 2230261 808.0 + 0 ENSG00000285603.1 antisense AL035693.1 2 OTTHUMG00000193230.1 +51409 chr6 HAVANA gene 1623806 2245692 4304.0 - 0 ENSG00000112699.10 protein_coding GMDS 1 OTTHUMG00000016143.5 +51410 chr6 HAVANA gene 2341450 2341711 262.0 + 0 ENSG00000236086.4 processed_pseudogene HMGN2P28 2 OTTHUMG00000185340.1 overlapping_locus +51411 chr6 HAVANA gene 2437549 2438249 701.0 + 0 ENSG00000272465.1 lincRNA AL031768.1 2 OTTHUMG00000185650.1 overlapping_locus +51412 chr6 HAVANA gene 2245748 2482022 13177.0 + 0 ENSG00000250903.8 lincRNA GMDS-DT 1 OTTHUMG00000014120.4 overlapping_locus +51413 chr6 HAVANA gene 2561947 2564143 2197.0 + 0 ENSG00000280423.1 TEC AL359852.1 2 OTTHUMG00000175882.1 +51414 chr6 HAVANA gene 2621913 2634603 2434.0 - 0 ENSG00000164385.8 lincRNA LINC01600 2 OTTHUMG00000014122.1 +51415 chr6 HAVANA gene 2617144 2640001 1831.0 + 0 ENSG00000228718.2 lincRNA LINC02521 2 OTTHUMG00000014123.2 +51416 chr6 HAVANA gene 2663629 2750966 6059.0 - 0 ENSG00000145949.10 protein_coding MYLK4 2 OTTHUMG00000014121.4 +51417 chr6 HAVANA gene 2765414 2786952 3877.0 + 0 ENSG00000124535.15 protein_coding WRNIP1 2 OTTHUMG00000014126.3 +51418 chr6 HAVANA gene 2832332 2842006 3094.0 - 0 ENSG00000021355.12 protein_coding SERPINB1 2 OTTHUMG00000014124.1 +51419 chr6 ENSEMBL gene 2854031 2854107 77.0 - 0 ENSG00000266750.1 miRNA MIR4645 3 +51420 chr6 HAVANA gene 2854657 2881407 1460.0 - 0 ENSG00000230438.6 lincRNA SERPINB9P1 1 OTTHUMG00000014127.4 +51421 chr6 HAVANA gene 2887266 2903280 4118.0 - 0 ENSG00000170542.5 protein_coding SERPINB9 2 OTTHUMG00000014131.1 +51422 chr6 HAVANA gene 2910613 2912113 193.0 - 0 ENSG00000232999.1 unprocessed_pseudogene AL133351.3 2 OTTHUMG00000155040.1 +51423 chr6 HAVANA gene 2916894 2917733 484.0 + 0 ENSG00000228365.1 lincRNA AL133351.2 1 OTTHUMG00000014132.1 +51424 chr6 HAVANA gene 2948159 2972165 4729.0 - 0 ENSG00000124570.19 protein_coding SERPINB6 2 OTTHUMG00000016170.12 +51425 chr6 HAVANA gene 2987967 2991173 2811.0 + 0 ENSG00000244041.7 lincRNA LINC01011 1 OTTHUMG00000014128.5 overlapping_locus +51426 chr6 HAVANA gene 2989722 2999134 539.0 - 0 ENSG00000224846.2 antisense AL133351.1 1 OTTHUMG00000014129.2 +51427 chr6 HAVANA gene 3023142 3023772 631.0 - 0 ENSG00000271361.1 processed_pseudogene HTATSF1P2 2 OTTHUMG00000184550.1 +51428 chr6 HAVANA gene 2987987 3028869 11558.0 + 0 ENSG00000124588.19 protein_coding NQO2 2 OTTHUMG00000014130.14 overlapping_locus +51429 chr6 HAVANA gene 3033183 3033288 106.0 + 0 ENSG00000274855.1 processed_pseudogene AL133351.4 2 OTTHUMG00000187593.1 +51430 chr6 HAVANA gene 3045384 3045800 417.0 + 0 ENSG00000232654.1 processed_pseudogene FAM136BP 1 OTTHUMG00000014137.5 pseudo_consens +51431 chr6 HAVANA gene 3048835 3049211 377.0 + 0 ENSG00000217707.2 unprocessed_pseudogene SERPINB8P1 2 OTTHUMG00000014133.2 +51432 chr6 HAVANA gene 3055849 3057357 1032.0 + 0 ENSG00000229282.2 lincRNA AL031963.2 2 OTTHUMG00000014139.2 +51433 chr6 HAVANA gene 3068045 3068894 850.0 - 0 ENSG00000272277.1 antisense AL031963.3 2 OTTHUMG00000185651.1 +51434 chr6 ENSEMBL gene 3088686 3088809 124.0 - 0 ENSG00000222248.1 rRNA_pseudogene RNA5SP201 3 +51435 chr6 HAVANA gene 3063991 3115187 4231.0 + 0 ENSG00000137275.13 protein_coding RIPK1 2 OTTHUMG00000014134.2 +51436 chr6 HAVANA gene 3138394 3153062 695.0 - 0 ENSG00000228170.1 antisense AL031963.1 2 OTTHUMG00000156977.1 +51437 chr6 HAVANA gene 3118374 3153578 5780.0 + 0 ENSG00000137274.12 protein_coding BPHL 1 OTTHUMG00000014140.6 +51438 chr6 HAVANA gene 3153669 3157526 1727.0 - 0 ENSG00000137267.5 protein_coding TUBB2A 2 OTTHUMG00000014135.1 +51439 chr6 HAVANA gene 3177044 3179764 871.0 - 0 ENSG00000216819.1 unprocessed_pseudogene TUBB2BP1 2 OTTHUMG00000014136.1 +51440 chr6 HAVANA gene 3182744 3195756 1505.0 - 0 ENSG00000230269.6 lincRNA LINC02525 2 OTTHUMG00000014141.2 +51441 chr6 HAVANA gene 3224261 3231730 2194.0 - 0 ENSG00000137285.9 protein_coding TUBB2B 2 OTTHUMG00000014143.2 +51442 chr6 HAVANA gene 3231403 3303373 10418.0 + 0 ENSG00000180822.11 protein_coding PSMG4 1 OTTHUMG00000014142.4 +51443 chr6 HAVANA gene 3311662 3313650 1989.0 + 0 ENSG00000272320.1 antisense AL445309.1 2 OTTHUMG00000185652.1 +51444 chr6 HAVANA gene 3268962 3457022 8898.0 - 0 ENSG00000137266.14 protein_coding SLC22A23 1 OTTHUMG00000014144.4 +51445 chr6 HAVANA gene 3594247 3624747 789.0 - 0 ENSG00000228793.1 lincRNA AL138881.1 1 OTTHUMG00000014145.1 +51446 chr6 HAVANA gene 3693923 3694075 153.0 - 0 ENSG00000270477.1 processed_pseudogene AL033523.1 1 OTTHUMG00000184551.1 pseudo_consens +51447 chr6 HAVANA gene 3722614 3752026 2474.0 - 0 ENSG00000168994.13 protein_coding PXDC1 2 OTTHUMG00000014146.2 +51448 chr6 HAVANA gene 3751111 3753871 2761.0 + 0 ENSG00000270504.1 antisense AL391422.4 2 OTTHUMG00000185108.1 +51449 chr6 HAVANA gene 3754099 3754840 436.0 + 0 ENSG00000219992.2 processed_pseudogene AL391422.1 1 OTTHUMG00000014148.2 pseudo_consens +51450 chr6 HAVANA gene 3849373 3851320 1948.0 + 0 ENSG00000145945.6 protein_coding FAM50B 2 OTTHUMG00000014147.3 overlapping_locus,retrogene +51451 chr6 HAVANA gene 3831933 3855737 629.0 + 0 ENSG00000238158.6 sense_overlapping AL391422.3 1 OTTHUMG00000014149.2 overlapping_locus +51452 chr6 HAVANA gene 3831936 3894292 995.0 + 0 ENSG00000233068.3 lincRNA AL391422.2 2 OTTHUMG00000014150.4 overlapping_locus +51453 chr6 HAVANA gene 3904920 3911979 7060.0 - 0 ENSG00000260604.2 lincRNA AL590004.3 2 OTTHUMG00000175886.3 +51454 chr6 HAVANA gene 3913922 3914292 371.0 - 0 ENSG00000218472.2 processed_pseudogene AL590004.2 1 OTTHUMG00000014151.2 pseudo_consens +51455 chr6 HAVANA gene 3921847 3922146 300.0 + 0 ENSG00000217135.2 processed_pseudogene AL590004.1 2 OTTHUMG00000014152.2 +51456 chr6 HAVANA gene 3941282 3941801 520.0 + 0 ENSG00000217566.2 processed_pseudogene TDGF1P4 1 OTTHUMG00000014153.2 pseudo_consens +51457 chr6 HAVANA gene 3978062 3979099 1038.0 + 0 ENSG00000216657.1 processed_pseudogene GLRX3P2 1 OTTHUMG00000014155.1 pseudo_consens +51458 chr6 HAVANA gene 3982673 3984130 1458.0 + 0 ENSG00000279926.1 TEC AL138831.3 2 OTTHUMG00000187087.1 +51459 chr6 HAVANA gene 4018713 4019202 490.0 + 0 ENSG00000272248.1 lincRNA AL138831.2 2 OTTHUMG00000185653.1 +51460 chr6 HAVANA gene 4018843 4021215 209.0 - 0 ENSG00000230648.1 antisense AL138831.1 2 OTTHUMG00000014156.1 +51461 chr6 HAVANA gene 4021267 4064983 7859.0 + 0 ENSG00000112739.16 protein_coding PRPF4B 2 OTTHUMG00000014157.6 +51462 chr6 HAVANA gene 4049434 4087344 3138.0 - 0 ENSG00000145975.14 protein_coding FAM217A 2 OTTHUMG00000014159.7 +51463 chr6 HAVANA gene 4079206 4130951 3322.0 + 0 ENSG00000185689.16 protein_coding C6orf201 1 OTTHUMG00000014160.6 +51464 chr6 HAVANA gene 4115689 4135597 4579.0 - 0 ENSG00000198721.12 protein_coding ECI2 1 OTTHUMG00000014158.8 +51465 chr6 HAVANA gene 4135423 4146053 640.0 + 0 ENSG00000254821.1 antisense AL136309.4 2 OTTHUMG00000166289.1 overlapping_locus +51466 chr6 HAVANA gene 4136072 4157385 2277.0 + 0 ENSG00000234817.2 lincRNA AL136309.2 2 OTTHUMG00000014161.2 overlapping_locus +51467 chr6 HAVANA gene 4186624 4188109 266.0 - 0 ENSG00000237716.1 lincRNA AL136309.3 1 OTTHUMG00000014163.1 +51468 chr6 HAVANA gene 4189116 4189806 691.0 + 0 ENSG00000216307.2 processed_pseudogene AL136309.1 1 OTTHUMG00000014162.2 pseudo_consens +51469 chr6 HAVANA gene 4345743 4347037 329.0 - 0 ENSG00000231811.2 lincRNA AL159166.1 2 OTTHUMG00000014165.2 +51470 chr6 ENSEMBL gene 4427963 4428081 119.0 + 0 ENSG00000201185.1 rRNA_pseudogene RNA5SP202 3 +51471 chr6 HAVANA gene 4449392 4468181 1805.0 + 0 ENSG00000285694.1 lincRNA AL162718.2 2 OTTHUMG00000193163.1 +51472 chr6 HAVANA gene 4491807 4495769 2272.0 + 0 ENSG00000260239.1 lincRNA LINC02533 2 OTTHUMG00000175890.2 +51473 chr6 HAVANA gene 4529722 4530008 287.0 + 0 ENSG00000270695.1 processed_pseudogene AL133393.1 1 OTTHUMG00000184547.1 pseudo_consens +51474 chr6 HAVANA gene 4304942 4583871 3989.0 - 0 ENSG00000285424.1 lincRNA AL162718.1 2 OTTHUMG00000192590.2 +51475 chr6 HAVANA gene 4599287 4602420 573.0 - 0 ENSG00000260673.1 lincRNA AL034376.1 2 OTTHUMG00000175892.1 +51476 chr6 HAVANA gene 4610612 4611919 1143.0 + 0 ENSG00000205444.3 lincRNA KU-MEL-3 2 OTTHUMG00000014166.2 +51477 chr6 HAVANA gene 4702463 4703779 1317.0 + 0 ENSG00000217385.1 processed_pseudogene PSMC1P11 1 OTTHUMG00000014167.1 pseudo_consens +51478 chr6 HAVANA gene 4714098 4724885 1354.0 - 0 ENSG00000284823.1 antisense AL356747.1 2 OTTHUMG00000192591.1 +51479 chr6 HAVANA gene 4774526 4775408 369.0 - 0 ENSG00000236336.1 antisense AL022725.1 1 OTTHUMG00000156967.1 +51480 chr6 HAVANA gene 4706159 4955551 4531.0 + 0 ENSG00000153046.17 protein_coding CDYL 2 OTTHUMG00000014170.5 +51481 chr6 HAVANA gene 4979072 4979494 423.0 + 0 ENSG00000217030.1 processed_pseudogene AL359643.1 1 OTTHUMG00000014169.1 pseudo_consens +51482 chr6 HAVANA gene 4994732 5004063 1962.0 - 0 ENSG00000124787.13 protein_coding RPP40 1 OTTHUMG00000014168.4 +51483 chr6 HAVANA gene 5029972 5043449 1489.0 + 0 ENSG00000272142.1 lincRNA LYRM4-AS1 2 OTTHUMG00000185668.1 +51484 chr6 HAVANA gene 5031756 5054423 3273.0 - 0 ENSG00000271978.1 lincRNA AL359643.2 2 OTTHUMG00000185669.1 +51485 chr6 HAVANA gene 5065795 5066982 1188.0 - 0 ENSG00000220685.3 processed_pseudogene AL139094.1 1 OTTHUMG00000014171.1 pseudo_consens +51486 chr6 HAVANA gene 5084581 5089487 4907.0 + 0 ENSG00000219607.3 protein_coding PPP1R3G 2 OTTHUMG00000014172.4 +51487 chr6 ENSEMBL gene 5148233 5148322 90.0 - 0 ENSG00000265083.1 miRNA MIR3691 3 +51488 chr6 HAVANA gene 5102593 5260939 9443.0 - 0 ENSG00000214113.10 protein_coding LYRM4 1 OTTHUMG00000014173.6 ncRNA_host +51489 chr6 HAVANA gene 5291030 5291388 359.0 - 0 ENSG00000220446.2 processed_pseudogene AL121978.1 1 OTTHUMG00000014175.2 pseudo_consens +51490 chr6 HAVANA gene 5451683 5458075 1333.0 - 0 ENSG00000269985.1 antisense AL021328.1 2 OTTHUMG00000184022.1 +51491 chr6 HAVANA gene 5609227 5610195 969.0 - 0 ENSG00000218574.1 processed_pseudogene HNRNPA1P37 1 OTTHUMG00000014177.1 pseudo_consens +51492 chr6 HAVANA gene 5664985 5695272 806.0 - 0 ENSG00000270174.1 antisense AL022097.1 2 OTTHUMG00000184023.1 +51493 chr6 HAVANA gene 5788346 5788699 354.0 - 0 ENSG00000217239.3 processed_pseudogene AL136968.2 1 OTTHUMG00000014180.1 pseudo_consens +51494 chr6 HAVANA gene 5817421 5818366 946.0 - 0 ENSG00000216360.1 processed_pseudogene AL136968.1 1 OTTHUMG00000014181.1 pseudo_consens +51495 chr6 HAVANA gene 5261044 5829192 4835.0 + 0 ENSG00000145982.12 protein_coding FARS2 2 OTTHUMG00000014178.6 +51496 chr6 HAVANA gene 5851506 5870220 411.0 + 0 ENSG00000233064.2 lincRNA AL136307.1 2 OTTHUMG00000014182.2 +51497 chr6 ENSEMBL gene 5918564 5918844 281.0 - 0 ENSG00000239472.3 misc_RNA RN7SL221P 3 +51498 chr6 HAVANA gene 5972412 5974012 1601.0 + 0 ENSG00000215057.4 processed_pseudogene PKMP5 1 OTTHUMG00000014183.2 pseudo_consens +51499 chr6 HAVANA gene 5997999 6007605 2328.0 - 0 ENSG00000124785.8 protein_coding NRN1 2 OTTHUMG00000014184.1 +51500 chr6 ENSEMBL gene 6169334 6169409 76.0 + 0 ENSG00000283616.1 miRNA MIR5683 3 +51501 chr6 ENSEMBL gene 6169304 6169435 132.0 - 0 ENSG00000263572.2 miRNA MIR7853 3 +51502 chr6 HAVANA gene 6144085 6321013 4690.0 - 0 ENSG00000124491.15 protein_coding F13A1 1 OTTHUMG00000014186.6 ncRNA_host +51503 chr6 HAVANA gene 6347081 6347381 301.0 - 0 ENSG00000241216.1 transcribed_processed_pseudogene SNAPC5P1 1 OTTHUMG00000014187.1 pseudo_consens,overlapping_locus +51504 chr6 HAVANA gene 6450356 6507443 2521.0 + 0 ENSG00000285717.1 lincRNA AL162719.1 2 OTTHUMG00000192697.1 +51505 chr6 HAVANA gene 6534697 6535631 935.0 + 0 ENSG00000218868.1 processed_pseudogene CNN3P1 1 OTTHUMG00000014189.1 pseudo_consens +51506 chr6 HAVANA gene 6346465 6622771 5603.0 - 0 ENSG00000216863.9 antisense LY86-AS1 2 OTTHUMG00000014192.3 overlapping_locus +51507 chr6 HAVANA gene 6588108 6654983 1254.0 + 0 ENSG00000112799.8 protein_coding LY86 2 OTTHUMG00000014190.2 +51508 chr6 HAVANA gene 6680309 6683633 3325.0 - 0 ENSG00000261211.1 lincRNA AL031123.2 2 OTTHUMG00000175893.1 +51509 chr6 HAVANA gene 6685148 6686984 1837.0 + 0 ENSG00000279368.1 TEC AL031123.3 2 OTTHUMG00000175895.1 +51510 chr6 HAVANA gene 6692744 6739030 1317.0 - 0 ENSG00000226281.3 lincRNA AL031123.1 1 OTTHUMG00000014191.3 +51511 chr6 HAVANA gene 6758276 6759291 506.0 - 0 ENSG00000224532.2 lincRNA AL136361.1 1 OTTHUMG00000014193.2 +51512 chr6 HAVANA gene 6794915 6795402 488.0 - 0 ENSG00000219986.2 processed_pseudogene BTF3P7 1 OTTHUMG00000014194.4 pseudo_consens +51513 chr6 HAVANA gene 6901022 6918715 933.0 - 0 ENSG00000223342.2 lincRNA AL158817.1 1 OTTHUMG00000014195.2 +51514 chr6 ENSEMBL gene 6938606 6938897 292.0 - 0 ENSG00000240936.3 misc_RNA RN7SL554P 3 +51515 chr6 HAVANA gene 6993191 6995554 517.0 + 0 ENSG00000203498.2 lincRNA AL139390.1 1 OTTHUMG00000014196.1 +51516 chr6 HAVANA gene 7183083 7185287 1676.0 + 0 ENSG00000225092.2 sense_intronic AL355336.1 2 OTTHUMG00000014197.2 overlapping_locus +51517 chr6 ENSEMBL gene 7187582 7187686 105.0 - 0 ENSG00000201483.1 misc_RNA RF00019 3 +51518 chr6 HAVANA gene 7107597 7251980 17254.0 + 0 ENSG00000124782.19 protein_coding RREB1 2 OTTHUMG00000014201.5 overlapping_locus +51519 chr6 HAVANA gene 7258910 7261993 1185.0 - 0 ENSG00000285771.1 lincRNA AL139095.5 2 OTTHUMG00000193018.1 +51520 chr6 HAVANA gene 7276031 7298872 500.0 + 0 ENSG00000238221.1 antisense AL139095.4 2 OTTHUMG00000014204.1 +51521 chr6 HAVANA gene 7331286 7331676 391.0 - 0 ENSG00000219375.1 processed_pseudogene AL139095.1 1 OTTHUMG00000014203.1 pseudo_consens,overlapping_locus +51522 chr6 HAVANA gene 7338839 7339568 730.0 - 0 ENSG00000220472.1 processed_pseudogene AL139095.2 1 OTTHUMG00000014205.1 pseudo_consens,overlapping_locus +51523 chr6 HAVANA gene 7340854 7342056 1203.0 - 0 ENSG00000230570.1 processed_pseudogene AL139095.3 1 OTTHUMG00000014206.1 pseudo_consens,overlapping_locus +51524 chr6 HAVANA gene 7268306 7347446 11349.0 - 0 ENSG00000124783.13 protein_coding SSR1 1 OTTHUMG00000014202.5 overlapping_locus +51525 chr6 HAVANA gene 7326656 7389743 3512.0 - 0 ENSG00000164304.15 protein_coding CAGE1 1 OTTHUMG00000014200.4 overlapping_locus +51526 chr6 HAVANA gene 7389496 7418037 3237.0 + 0 ENSG00000124784.8 protein_coding RIOK1 2 OTTHUMG00000014207.2 +51527 chr6 HAVANA gene 7481094 7482594 1501.0 - 0 ENSG00000233503.1 processed_pseudogene HNRNPLP1 1 OTTHUMG00000014208.1 pseudo_consens +51528 chr6 HAVANA gene 7506203 7506549 347.0 + 0 ENSG00000219993.1 processed_pseudogene AL138878.1 1 OTTHUMG00000014209.1 pseudo_consens +51529 chr6 HAVANA gene 7516600 7517840 1241.0 - 0 ENSG00000234115.2 processed_pseudogene AL138878.2 1 OTTHUMG00000014210.2 pseudo_consens +51530 chr6 HAVANA gene 7540451 7541338 888.0 - 0 ENSG00000261189.1 antisense AL031058.1 2 OTTHUMG00000175897.1 +51531 chr6 HAVANA gene 7541575 7586717 10093.0 + 0 ENSG00000096696.13 protein_coding DSP 2 OTTHUMG00000014212.4 +51532 chr6 HAVANA gene 7590199 7611967 5836.0 + 0 ENSG00000168566.12 protein_coding SNRNP48 2 OTTHUMG00000014213.4 +51533 chr6 HAVANA gene 7620422 7620878 457.0 + 0 ENSG00000236512.1 processed_pseudogene AL390026.1 1 OTTHUMG00000014215.2 pseudo_consens +51534 chr6 HAVANA gene 7726797 7881422 2780.0 + 0 ENSG00000153162.8 protein_coding BMP6 2 OTTHUMG00000014217.1 +51535 chr6 HAVANA gene 7881517 7910814 4387.0 - 0 ENSG00000239264.8 protein_coding TXNDC5 2 OTTHUMG00000014216.3 overlapping_locus +51536 chr6 HAVANA gene 7938430 7939322 893.0 - 0 ENSG00000217746.1 processed_pseudogene AL096800.1 2 OTTHUMG00000014218.1 overlapping_locus +51537 chr6 HAVANA gene 7986537 7988192 1656.0 + 0 ENSG00000219294.6 processed_pseudogene PIP5K1P1 1 OTTHUMG00000014219.1 pseudo_consens +51538 chr6 HAVANA gene 7881522 8064364 3030.0 - 0 ENSG00000259040.5 protein_coding BLOC1S5-TXNDC5 2 OTTHUMG00000171453.1 overlapping_locus +51539 chr6 HAVANA gene 8013567 8064414 3315.0 - 0 ENSG00000188428.19 protein_coding BLOC1S5 2 OTTHUMG00000014220.5 overlapping_locus +51540 chr6 HAVANA gene 8015726 8102530 768.0 - 0 ENSG00000265818.1 protein_coding EEF1E1-BLOC1S5 2 OTTHUMG00000179299.1 overlapping_locus +51541 chr6 HAVANA gene 8073360 8102578 2107.0 - 0 ENSG00000124802.11 protein_coding EEF1E1 1 OTTHUMG00000014221.4 overlapping_locus +51542 chr6 HAVANA gene 8341937 8343021 746.0 - 0 ENSG00000234763.1 lincRNA AL359378.1 2 OTTHUMG00000014223.1 +51543 chr6 HAVANA gene 8102711 8343139 4624.0 + 0 ENSG00000232234.3 bidirectional_promoter_lncRNA AL355499.1 2 OTTHUMG00000192537.3 overlapping_locus +51544 chr6 HAVANA gene 8411463 8435611 2828.0 - 0 ENSG00000124786.11 protein_coding SLC35B3 2 OTTHUMG00000014224.3 +51545 chr6 ENSEMBL gene 8653558 8653797 240.0 + 0 ENSG00000276019.1 misc_RNA RF02101 3 +51546 chr6 HAVANA gene 8158162 8760447 866.0 + 0 ENSG00000285216.1 bidirectional_promoter_lncRNA AL355499.2 2 OTTHUMG00000192538.2 ncRNA_host,overlapping_locus +51547 chr6 HAVANA gene 9124221 9161777 661.0 - 0 ENSG00000225775.1 lincRNA AL137220.1 2 OTTHUMG00000014226.1 +51548 chr6 HAVANA gene 8435568 9294133 48393.0 + 0 ENSG00000285219.1 bidirectional_promoter_lncRNA AL591485.1 2 OTTHUMG00000160417.14 ncRNA_host,overlapping_locus +51549 chr6 HAVANA gene 10118452 10119253 802.0 + 0 ENSG00000216368.2 processed_pseudogene AL136226.1 1 OTTHUMG00000014227.2 pseudo_consens +51550 chr6 HAVANA gene 9596110 10211608 4807.0 - 0 ENSG00000181355.21 transcribed_unitary_pseudogene OFCC1 2 OTTHUMG00000159104.9 +51551 chr6 HAVANA gene 10213881 10214362 482.0 - 0 ENSG00000229765.2 processed_pseudogene AL354868.1 1 OTTHUMG00000014228.2 pseudo_consens +51552 chr6 ENSEMBL gene 10222036 10222161 126.0 + 0 ENSG00000221583.1 snRNA RNU6ATAC21P 3 +51553 chr6 HAVANA gene 10365593 10366582 675.0 - 0 ENSG00000216781.2 processed_pseudogene AL138885.1 1 OTTHUMG00000014229.2 pseudo_consens +51554 chr6 HAVANA gene 10404502 10407928 3427.0 + 0 ENSG00000285278.1 antisense TFAP2A-AS2 2 OTTHUMG00000192394.1 +51555 chr6 HAVANA gene 10409340 10416446 1692.0 + 0 ENSG00000229950.1 antisense TFAP2A-AS1 2 OTTHUMG00000014233.1 +51556 chr6 HAVANA gene 10393186 10419659 8245.0 - 0 ENSG00000137203.11 protein_coding TFAP2A 1 OTTHUMG00000014235.5 +51557 chr6 HAVANA gene 10423140 10426176 539.0 - 0 ENSG00000228478.1 lincRNA AL138885.2 1 OTTHUMG00000014230.1 +51558 chr6 HAVANA gene 10426623 10429110 608.0 + 0 ENSG00000285759.1 lincRNA AL138885.3 2 OTTHUMG00000193130.1 +51559 chr6 HAVANA gene 10429255 10434874 1895.0 - 0 ENSG00000183674.11 lincRNA LINC00518 2 OTTHUMG00000159175.1 +51560 chr6 ENSEMBL gene 10439717 10439794 78.0 + 0 ENSG00000263705.1 miRNA MIR5689 3 +51561 chr6 HAVANA gene 10434316 10456781 860.0 + 0 ENSG00000229401.1 lincRNA MIR5689HG 1 OTTHUMG00000014234.1 ncRNA_host +51562 chr6 HAVANA gene 10459906 10460541 636.0 - 0 ENSG00000238076.1 processed_pseudogene MRPL48P1 1 OTTHUMG00000014231.2 pseudo_consens +51563 chr6 HAVANA gene 10474500 10478502 256.0 - 0 ENSG00000231056.1 lincRNA LINC02522 1 OTTHUMG00000014232.1 +51564 chr6 HAVANA gene 10511036 10514546 1475.0 - 0 ENSG00000237685.1 antisense AL139039.3 2 OTTHUMG00000014238.1 +51565 chr6 HAVANA gene 10514282 10514973 692.0 + 0 ENSG00000216359.1 processed_pseudogene AL139039.1 2 OTTHUMG00000014236.1 +51566 chr6 HAVANA gene 10574749 10575227 479.0 - 0 ENSG00000217181.1 processed_pseudogene AL139039.2 1 OTTHUMG00000014239.1 pseudo_consens +51567 chr6 HAVANA gene 10492223 10629368 9072.0 + 0 ENSG00000111846.17 protein_coding GCNT2 2 OTTHUMG00000014244.6 +51568 chr6 HAVANA gene 10633762 10634695 934.0 + 0 ENSG00000205318.5 processed_pseudogene GCNT2P 2 OTTHUMG00000014243.2 +51569 chr6 ENSEMBL gene 10674658 10674768 111.0 - 0 ENSG00000201048.1 misc_RNA RF00019 3 +51570 chr6 HAVANA gene 10659498 10692860 3467.0 + 0 ENSG00000285763.1 antisense AL358777.1 2 OTTHUMG00000192782.1 +51571 chr6 HAVANA gene 10671418 10694797 884.0 - 0 ENSG00000137434.11 protein_coding C6orf52 1 OTTHUMG00000014240.3 ncRNA_host +51572 chr6 HAVANA gene 10694695 10709782 1800.0 + 0 ENSG00000111845.4 protein_coding PAK1IP1 2 OTTHUMG00000014245.1 +51573 chr6 HAVANA gene 10722915 10731129 1321.0 + 0 ENSG00000111843.13 protein_coding TMEM14C 2 OTTHUMG00000014242.1 +51574 chr6 HAVANA gene 10743324 10747663 1471.0 - 0 ENSG00000272097.1 lincRNA AL024498.1 2 OTTHUMG00000185674.1 +51575 chr6 ENSEMBL gene 10752791 10752926 136.0 - 0 ENSG00000222383.1 rRNA_pseudogene RNA5SP203 3 +51576 chr6 HAVANA gene 10762723 10838555 4226.0 - 0 ENSG00000111837.11 protein_coding MAK 2 OTTHUMG00000014247.3 +51577 chr6 HAVANA gene 10747759 10852753 4815.0 + 0 ENSG00000137210.13 protein_coding TMEM14B 2 OTTHUMG00000014246.3 overlapping_locus +51578 chr6 HAVANA gene 10873223 10881941 2441.0 - 0 ENSG00000124827.6 protein_coding GCM2 2 OTTHUMG00000014249.1 +51579 chr6 HAVANA gene 10881780 10884349 666.0 + 0 ENSG00000235051.3 antisense AL357497.1 2 OTTHUMG00000014248.3 overlapping_locus +51580 chr6 HAVANA gene 10747794 10930423 1589.0 + 0 ENSG00000272162.1 protein_coding AL024498.2 2 OTTHUMG00000185388.1 overlapping_locus +51581 chr6 HAVANA gene 10886831 10979320 3962.0 + 0 ENSG00000153157.12 protein_coding SYCP2L 2 OTTHUMG00000014250.3 overlapping_locus +51582 chr6 HAVANA gene 11015586 11015888 303.0 + 0 ENSG00000274541.1 processed_pseudogene AL121955.1 2 OTTHUMG00000187594.1 +51583 chr6 HAVANA gene 10980759 11044314 3997.0 - 0 ENSG00000197977.3 protein_coding ELOVL2 2 OTTHUMG00000014252.1 +51584 chr6 HAVANA gene 11043524 11078226 1587.0 + 0 ENSG00000230314.6 antisense ELOVL2-AS1 2 OTTHUMG00000014251.2 +51585 chr6 HAVANA gene 11102489 11111732 3242.0 - 0 ENSG00000244476.2 protein_coding ERVFRD-1 2 OTTHUMG00000159193.1 +51586 chr6 HAVANA gene 11094033 11138733 4688.0 + 0 ENSG00000224531.5 protein_coding SMIM13 2 OTTHUMG00000014253.5 +51587 chr6 HAVANA gene 11154929 11155150 222.0 - 0 ENSG00000271245.1 processed_pseudogene AL136139.1 1 OTTHUMG00000184552.1 pseudo_consens +51588 chr6 HAVANA gene 11173452 11259099 704.0 + 0 ENSG00000247925.2 antisense AL139807.1 2 OTTHUMG00000162157.1 +51589 chr6 HAVANA gene 11183298 11382348 10359.0 - 0 ENSG00000111859.16 protein_coding NEDD9 2 OTTHUMG00000014255.7 +51590 chr6 HAVANA gene 11417350 11481239 699.0 + 0 ENSG00000233656.1 lincRNA AL445430.1 2 OTTHUMG00000014256.1 +51591 chr6 ENSEMBL gene 11503509 11503671 163.0 - 0 ENSG00000202313.1 snRNA RNU1-64P 3 +51592 chr6 HAVANA gene 11487226 11515710 686.0 + 0 ENSG00000242753.1 lincRNA AL445430.2 2 OTTHUMG00000014257.1 overlapping_locus +51593 chr6 HAVANA gene 11514192 11516466 2275.0 + 0 ENSG00000218020.3 transcribed_processed_pseudogene THAP12P5 1 OTTHUMG00000014258.1 pseudo_consens,overlapping_locus +51594 chr6 HAVANA gene 11538278 11583524 8362.0 + 0 ENSG00000205269.5 protein_coding TMEM170B 1 OTTHUMG00000014259.1 +51595 chr6 HAVANA gene 11607552 11607981 430.0 + 0 ENSG00000271897.1 lincRNA AL357518.1 2 OTTHUMG00000185675.1 +51596 chr6 ENSEMBL gene 11644067 11644343 277.0 + 0 ENSG00000277473.1 misc_RNA RF00017 3 +51597 chr6 ENSEMBL gene 11709819 11709960 142.0 + 0 ENSG00000207419.1 snoRNA RF00272 3 +51598 chr6 HAVANA gene 11712054 11807046 4150.0 - 0 ENSG00000111863.12 protein_coding ADTRP 2 OTTHUMG00000014260.4 +51599 chr6 HAVANA gene 11810602 11811248 554.0 + 0 ENSG00000234427.1 lincRNA AL022724.1 2 OTTHUMG00000014261.1 +51600 chr6 HAVANA gene 11861626 11862970 1345.0 - 0 ENSG00000215124.2 processed_pseudogene AMD1P4 1 OTTHUMG00000014262.1 pseudo_consens +51601 chr6 HAVANA gene 11990343 11992012 276.0 - 0 ENSG00000225102.1 antisense AL157373.1 2 OTTHUMG00000014263.1 +51602 chr6 HAVANA gene 12007670 12008856 855.0 + 0 ENSG00000229896.2 lincRNA AL157373.2 2 OTTHUMG00000014264.2 overlapping_locus +51603 chr6 HAVANA gene 12008762 12164999 10979.0 + 0 ENSG00000095951.16 protein_coding HIVEP1 1 OTTHUMG00000014265.4 overlapping_locus +51604 chr6 HAVANA gene 12290363 12297194 2033.0 + 0 ENSG00000078401.6 protein_coding EDN1 2 OTTHUMG00000014266.1 +51605 chr6 HAVANA gene 12319453 12319592 140.0 + 0 ENSG00000218893.1 processed_pseudogene SUMO2P12 1 OTTHUMG00000014267.1 pseudo_consens +51606 chr6 ENSEMBL gene 12406486 12406781 296.0 - 0 ENSG00000223321.1 misc_RNA RN7SKP293 3 +51607 chr6 HAVANA gene 12514110 12514724 615.0 + 0 ENSG00000212802.4 processed_pseudogene RPL15P3 2 OTTHUMG00000014268.2 +51608 chr6 HAVANA gene 12582915 12585404 894.0 - 0 ENSG00000234015.1 lincRNA LINC02530 2 OTTHUMG00000014269.1 +51609 chr6 ENSEMBL gene 13214056 13214219 164.0 + 0 ENSG00000206702.1 snRNA RNU1-11P 3 +51610 chr6 HAVANA gene 12716805 13290484 11198.0 + 0 ENSG00000112137.17 protein_coding PHACTR1 2 OTTHUMG00000014270.3 ncRNA_host +51611 chr6 HAVANA gene 13290018 13290490 473.0 - 0 ENSG00000272379.1 lincRNA AL008729.2 2 OTTHUMG00000185350.3 overlapping_locus +51612 chr6 HAVANA gene 13264861 13295586 3115.0 - 0 ENSG00000215022.7 antisense AL008729.1 2 OTTHUMG00000014271.3 overlapping_locus +51613 chr6 HAVANA gene 13266542 13328583 8300.0 - 0 ENSG00000145979.17 protein_coding TBC1D7 2 OTTHUMG00000014272.5 overlapping_locus +51614 chr6 HAVANA gene 13486294 13486852 332.0 + 0 ENSG00000237786.1 antisense GFOD1-AS1 1 OTTHUMG00000014274.1 +51615 chr6 HAVANA gene 13357830 13487662 10686.0 - 0 ENSG00000145990.10 protein_coding GFOD1 2 OTTHUMG00000014276.2 +51616 chr6 HAVANA gene 13521266 13522045 780.0 + 0 ENSG00000218265.1 processed_pseudogene RPS4XP7 1 OTTHUMG00000014275.1 pseudo_consens +51617 chr6 ENSEMBL gene 13547704 13548013 310.0 + 0 ENSG00000202351.1 misc_RNA RN7SKP204 3 +51618 chr6 HAVANA gene 13614111 13615155 1045.0 - 0 ENSG00000261071.1 antisense AL441883.1 2 OTTHUMG00000175899.1 +51619 chr6 HAVANA gene 13574529 13615158 6507.0 + 0 ENSG00000124523.15 protein_coding SIRT5 2 OTTHUMG00000014278.3 +51620 chr6 HAVANA gene 13615327 13632739 1865.0 + 0 ENSG00000225921.6 protein_coding NOL7 2 OTTHUMG00000014277.1 +51621 chr6 HAVANA gene 13621498 13711564 3347.0 - 0 ENSG00000010017.12 protein_coding RANBP9 2 OTTHUMG00000015642.1 +51622 chr6 HAVANA gene 13786557 13814568 6057.0 - 0 ENSG00000050393.11 protein_coding MCUR1 2 OTTHUMG00000014279.3 +51623 chr6 HAVANA gene 13825432 13826574 1143.0 + 0 ENSG00000272209.1 lincRNA AL023583.1 2 OTTHUMG00000185343.1 +51624 chr6 HAVANA gene 13949095 13949666 572.0 + 0 ENSG00000220868.2 processed_pseudogene MRPL35P1 1 OTTHUMG00000014281.2 pseudo_consens,overlapping_locus +51625 chr6 HAVANA gene 13924446 13980302 4090.0 + 0 ENSG00000180537.12 protein_coding RNF182 2 OTTHUMG00000014280.3 overlapping_locus +51626 chr6 HAVANA gene 14004920 14006901 386.0 + 0 ENSG00000233981.1 lincRNA AL022396.1 2 OTTHUMG00000014282.1 +51627 chr6 HAVANA gene 14117256 14136918 2515.0 + 0 ENSG00000112149.9 protein_coding CD83 2 OTTHUMG00000014283.1 +51628 chr6 ENSEMBL gene 14156462 14156523 62.0 + 0 ENSG00000238987.1 snRNA RNU7-133P 3 +51629 chr6 HAVANA gene 14152196 14211186 2621.0 - 0 ENSG00000285639.1 lincRNA AL133259.1 2 OTTHUMG00000192663.1 +51630 chr6 HAVANA gene 14229775 14231570 470.0 - 0 ENSG00000230631.1 lincRNA AL353152.1 2 OTTHUMG00000014284.1 +51631 chr6 HAVANA gene 14280127 14285454 3697.0 - 0 ENSG00000226673.2 lincRNA LINC01108 1 OTTHUMG00000014285.2 +51632 chr6 HAVANA gene 14391231 14393288 489.0 - 0 ENSG00000237346.1 lincRNA AL080313.2 2 OTTHUMG00000014287.1 +51633 chr6 HAVANA gene 14394326 14404289 405.0 + 0 ENSG00000234540.1 lincRNA AL080313.1 2 OTTHUMG00000014286.1 +51634 chr6 HAVANA gene 14597514 14599690 146.0 - 0 ENSG00000229646.2 lincRNA AL109914.1 2 OTTHUMG00000014288.2 +51635 chr6 ENSEMBL gene 14646535 14646638 104.0 + 0 ENSG00000206960.1 snRNA RNU6-793P 3 +51636 chr6 HAVANA gene 14661829 15090003 1735.0 - 0 ENSG00000234261.3 lincRNA AL138720.1 2 OTTHUMG00000014290.2 +51637 chr6 HAVANA gene 15102946 15104130 869.0 - 0 ENSG00000216754.2 processed_pseudogene AL050335.1 1 OTTHUMG00000014291.2 pseudo_consens +51638 chr6 ENSEMBL gene 15112968 15113221 254.0 + 0 ENSG00000242989.3 misc_RNA RN7SL332P 3 +51639 chr6 HAVANA gene 15243923 15245000 1078.0 - 0 ENSG00000271888.1 lincRNA AL136162.1 2 OTTHUMG00000185676.1 +51640 chr6 HAVANA gene 15247815 15248634 455.0 - 0 ENSG00000235488.1 antisense JARID2-AS1 1 OTTHUMG00000014292.1 +51641 chr6 ENSEMBL gene 15314920 15315026 107.0 + 0 ENSG00000201367.1 snRNA RNU6-522P 3 +51642 chr6 ENSEMBL gene 15324367 15324472 106.0 - 0 ENSG00000201519.1 snRNA RNU6-645P 3 +51643 chr6 HAVANA gene 15246296 15522040 6015.0 + 0 ENSG00000008083.13 protein_coding JARID2 2 OTTHUMG00000014293.1 ncRNA_host +51644 chr6 ENSEMBL gene 15522195 15522300 106.0 - 0 ENSG00000277411.1 rRNA RF00001 3 +51645 chr6 HAVANA gene 15522801 15663058 3052.0 - 0 ENSG00000047579.19 protein_coding DTNBP1 2 OTTHUMG00000014295.6 +51646 chr6 HAVANA gene 15934782 15935315 534.0 + 0 ENSG00000214027.3 processed_pseudogene ARPC3P5 1 OTTHUMG00000014296.1 pseudo_consens +51647 chr6 HAVANA gene 15994944 15999797 845.0 + 0 ENSG00000232947.1 lincRNA LINC02543 2 OTTHUMG00000014297.1 +51648 chr6 HAVANA gene 16041381 16041614 234.0 - 0 ENSG00000274212.1 processed_pseudogene AL365265.1 2 OTTHUMG00000187595.1 +51649 chr6 HAVANA gene 16107622 16108593 972.0 + 0 ENSG00000217585.1 processed_pseudogene AL021407.2 1 OTTHUMG00000014301.1 pseudo_consens +51650 chr6 ENSEMBL gene 16141556 16141624 69.0 + 0 ENSG00000263712.1 miRNA MIR4639 3 +51651 chr6 HAVANA gene 16129125 16148248 3033.0 + 0 ENSG00000007944.14 protein_coding MYLIP 2 OTTHUMG00000016405.2 ncRNA_host +51652 chr6 HAVANA gene 16160926 16161411 486.0 + 0 ENSG00000218073.1 processed_pseudogene AL021407.3 1 OTTHUMG00000014299.1 pseudo_consens +51653 chr6 HAVANA gene 16163377 16163762 386.0 - 0 ENSG00000217078.1 processed_pseudogene AL021407.1 2 OTTHUMG00000014300.1 +51654 chr6 HAVANA gene 16171606 16172031 426.0 + 0 ENSG00000216364.1 processed_pseudogene MRPL42P2 1 OTTHUMG00000014298.1 pseudo_consens +51655 chr6 ENSEMBL gene 16205014 16205120 107.0 + 0 ENSG00000251831.1 snRNA RNU6-1114P 3 +51656 chr6 ENSEMBL gene 16232231 16232330 100.0 - 0 ENSG00000207193.1 misc_RNA RF00019 3 +51657 chr6 HAVANA gene 16259101 16264553 1667.0 - 0 ENSG00000282024.1 antisense AL009031.1 2 OTTHUMG00000191399.1 +51658 chr6 HAVANA gene 16238580 16295549 2232.0 + 0 ENSG00000137198.9 protein_coding GMPR 2 OTTHUMG00000014302.3 +51659 chr6 HAVANA gene 16299112 16761491 16487.0 - 0 ENSG00000124788.18 protein_coding ATXN1 2 OTTHUMG00000014303.5 +51660 chr6 HAVANA gene 16761138 16762652 698.0 + 0 ENSG00000229931.1 antisense AL137003.1 2 OTTHUMG00000153136.1 +51661 chr6 HAVANA gene 16764346 16766883 2538.0 + 0 ENSG00000272341.1 lincRNA AL137003.2 2 OTTHUMG00000185677.1 +51662 chr6 HAVANA gene 17102258 17131372 2882.0 + 0 ENSG00000230873.8 protein_coding STMND1 2 OTTHUMG00000014304.4 +51663 chr6 HAVANA gene 17281346 17293875 3444.0 + 0 ENSG00000112183.14 protein_coding RBM24 2 OTTHUMG00000014306.4 +51664 chr6 HAVANA gene 17381367 17382120 754.0 + 0 ENSG00000219314.1 processed_pseudogene AL034372.1 1 OTTHUMG00000014307.1 pseudo_consens +51665 chr6 HAVANA gene 17530899 17531652 754.0 - 0 ENSG00000184612.8 processed_pseudogene RPL7P26 1 OTTHUMG00000014308.2 pseudo_consens +51666 chr6 HAVANA gene 17393216 17557792 3637.0 + 0 ENSG00000112186.11 protein_coding CAP2 2 OTTHUMG00000014311.2 +51667 chr6 HAVANA gene 17582034 17582305 272.0 + 0 ENSG00000218359.1 processed_pseudogene SUMO2P13 1 OTTHUMG00000014310.1 pseudo_consens +51668 chr6 HAVANA gene 17600355 17611719 4677.0 + 0 ENSG00000137414.5 protein_coding FAM8A1 2 OTTHUMG00000014309.1 +51669 chr6 ENSEMBL gene 17619533 17619634 102.0 + 0 ENSG00000206881.1 snRNA RNU6-190P 3 +51670 chr6 HAVANA gene 17615035 17706834 6030.0 - 0 ENSG00000124789.11 protein_coding NUP153 2 OTTHUMG00000014312.1 +51671 chr6 HAVANA gene 17706257 17707344 1088.0 + 0 ENSG00000272269.1 antisense AL138724.1 2 OTTHUMG00000185678.1 +51672 chr6 ENSEMBL gene 17721786 17721903 118.0 - 0 ENSG00000201415.1 rRNA_pseudogene RNA5SP204 3 +51673 chr6 ENSEMBL gene 17737458 17737556 99.0 - 0 ENSG00000201442.2 misc_RNA RF00019 3 +51674 chr6 HAVANA gene 17953572 17953930 359.0 + 0 ENSG00000220920.1 unprocessed_pseudogene AL023807.1 1 OTTHUMG00000014314.1 pseudo_consens +51675 chr6 HAVANA gene 17759183 17987623 11126.0 - 0 ENSG00000137177.19 protein_coding KIF13A 1 OTTHUMG00000014313.8 +51676 chr6 HAVANA gene 18120440 18122687 2248.0 - 0 ENSG00000187566.5 protein_coding NHLRC1 2 OTTHUMG00000014315.3 +51677 chr6 HAVANA gene 18128311 18155074 3181.0 - 0 ENSG00000137364.4 protein_coding TPMT 2 OTTHUMG00000014317.1 +51678 chr6 HAVANA gene 18155329 18223853 4595.0 + 0 ENSG00000165097.14 protein_coding KDM1B 2 OTTHUMG00000014316.5 +51679 chr6 HAVANA gene 18223868 18264823 4361.0 - 0 ENSG00000124795.15 protein_coding DEK 1 OTTHUMG00000014319.7 +51680 chr6 ENSEMBL gene 18273165 18273266 102.0 - 0 ENSG00000199715.1 misc_RNA RF00019 3 +51681 chr6 HAVANA gene 18304854 18305045 192.0 - 0 ENSG00000278102.1 processed_pseudogene AL138825.1 2 OTTHUMG00000187596.1 +51682 chr6 ENSEMBL gene 18306973 18307079 107.0 - 0 ENSG00000200681.1 snRNA RNU6-263P 3 +51683 chr6 HAVANA gene 18363417 18365423 2007.0 - 0 ENSG00000217414.2 processed_pseudogene DDX18P3 1 OTTHUMG00000014321.2 pseudo_consens +51684 chr6 HAVANA gene 18366736 18368644 1314.0 - 0 ENSG00000218976.2 unprocessed_pseudogene AL138725.1 1 OTTHUMG00000014320.2 pseudo_consens +51685 chr6 HAVANA gene 18387350 18468874 5175.0 + 0 ENSG00000137393.9 protein_coding RNF144B 2 OTTHUMG00000014322.2 +51686 chr6 ENSEMBL gene 18571784 18571880 97.0 + 0 ENSG00000207775.1 miRNA MIR548A1 3 +51687 chr6 HAVANA gene 18522739 18674001 1022.0 + 0 ENSG00000283408.1 lincRNA MIR548A1HG 2 OTTHUMG00000191865.1 ncRNA_host +51688 chr6 HAVANA gene 19143695 19144160 466.0 + 0 ENSG00000217379.2 processed_pseudogene AL589647.1 1 OTTHUMG00000014324.2 pseudo_consens +51689 chr6 HAVANA gene 19290319 19321021 381.0 - 0 ENSG00000231662.1 lincRNA AL357052.1 2 OTTHUMG00000014325.1 +51690 chr6 HAVANA gene 19348181 19349076 896.0 + 0 ENSG00000218643.2 processed_pseudogene RPL5P20 1 OTTHUMG00000014326.2 pseudo_consens +51691 chr6 ENSEMBL gene 19438283 19438418 136.0 + 0 ENSG00000201523.1 rRNA_pseudogene RNA5SP205 3 +51692 chr6 HAVANA gene 19612755 19614036 1282.0 + 0 ENSG00000214012.4 processed_pseudogene KRT18P38 1 OTTHUMG00000014327.2 pseudo_consens +51693 chr6 HAVANA gene 19638040 19638808 385.0 - 0 ENSG00000217314.2 processed_pseudogene UQCRFS1P3 1 OTTHUMG00000014328.2 pseudo_consens,overlapping_locus +51694 chr6 ENSEMBL gene 19642425 19642529 105.0 - 0 ENSG00000200957.1 snRNA RNU6-801P 3 +51695 chr6 HAVANA gene 19324988 19839080 5471.0 - 0 ENSG00000228412.8 antisense AL022068.1 1 OTTHUMG00000014330.4 ncRNA_host,overlapping_locus +51696 chr6 HAVANA gene 19837386 19840684 2344.0 + 0 ENSG00000172201.11 protein_coding ID4 2 OTTHUMG00000014333.1 +51697 chr6 HAVANA gene 20042455 20042940 486.0 - 0 ENSG00000229700.1 processed_pseudogene AL008627.1 1 OTTHUMG00000016195.1 pseudo_consens +51698 chr6 HAVANA gene 20102145 20212399 1794.0 - 0 ENSG00000172197.10 protein_coding MBOAT1 2 OTTHUMG00000014334.1 +51699 chr6 HAVANA gene 20212087 20317739 380.0 + 0 ENSG00000227803.2 antisense AL158198.1 2 OTTHUMG00000014335.2 +51700 chr6 ENSEMBL gene 20421583 20421887 305.0 - 0 ENSG00000240869.3 misc_RNA RN7SL128P 3 +51701 chr6 HAVANA gene 20437821 20440178 400.0 + 0 ENSG00000224707.1 sense_intronic E2F3-IT1 1 OTTHUMG00000014337.1 overlapping_locus +51702 chr6 ENSEMBL gene 20452369 20452473 105.0 - 0 ENSG00000222431.1 snRNA RNU6-141P 3 +51703 chr6 HAVANA gene 20401906 20493715 5164.0 + 0 ENSG00000112242.14 protein_coding E2F3 2 OTTHUMG00000016389.2 overlapping_locus +51704 chr6 ENSEMBL gene 20500175 20500276 102.0 + 0 ENSG00000201683.1 misc_RNA RF00019 3 +51705 chr6 HAVANA gene 20722328 20723655 332.0 - 0 ENSG00000225832.1 processed_pseudogene AL035090.1 1 OTTHUMG00000014338.1 pseudo_consens +51706 chr6 HAVANA gene 20756103 20800694 614.0 - 0 ENSG00000233848.1 antisense AL513188.1 2 OTTHUMG00000014339.1 +51707 chr6 ENSEMBL gene 20993474 20993568 95.0 - 0 ENSG00000252046.1 snRNA RNU6-150P 3 +51708 chr6 HAVANA gene 20534457 21232404 4602.0 + 0 ENSG00000145996.11 protein_coding CDKAL1 2 OTTHUMG00000014340.1 +51709 chr6 HAVANA gene 21354411 21355296 386.0 - 0 ENSG00000227089.2 lincRNA AL031767.1 2 OTTHUMG00000014341.2 +51710 chr6 HAVANA gene 21486061 21511895 990.0 - 0 ENSG00000280989.1 lincRNA LINC00581 2 OTTHUMG00000189558.1 +51711 chr6 HAVANA gene 21521678 21523783 2106.0 - 0 ENSG00000231754.2 lincRNA AL512380.1 2 OTTHUMG00000014342.2 +51712 chr6 HAVANA gene 21528739 21595593 1780.0 - 0 ENSG00000283480.1 antisense AL512380.2 2 OTTHUMG00000191690.1 +51713 chr6 HAVANA gene 21592768 21598619 5852.0 + 0 ENSG00000124766.6 protein_coding SOX4 2 OTTHUMG00000016101.2 retrogene +51714 chr6 HAVANA gene 21602128 21602383 256.0 + 0 ENSG00000220771.2 processed_pseudogene BOLA2P3 1 OTTHUMG00000014343.2 pseudo_consens +51715 chr6 HAVANA gene 21822536 21822737 202.0 + 0 ENSG00000280443.1 TEC AL136313.1 2 OTTHUMG00000175901.1 overlapping_locus +51716 chr6 ENSEMBL gene 22085544 22085918 375.0 + 0 ENSG00000222515.1 misc_RNA RN7SKP240 3 +51717 chr6 HAVANA gene 22134957 22147193 1940.0 - 0 ENSG00000260455.1 lincRNA NBAT1 2 OTTHUMG00000175902.1 +51718 chr6 HAVANA gene 22213306 22214237 604.0 - 0 ENSG00000219404.2 processed_pseudogene AL359694.1 1 OTTHUMG00000014346.3 pseudo_consens +51719 chr6 HAVANA gene 22220781 22222395 1615.0 + 0 ENSG00000261568.1 lincRNA AL359694.2 2 OTTHUMG00000175903.1 +51720 chr6 HAVANA gene 22287244 22297501 1364.0 - 0 ENSG00000172179.11 protein_coding PRL 2 OTTHUMG00000016111.1 +51721 chr6 HAVANA gene 21664772 22368328 13289.0 + 0 ENSG00000272168.6 lincRNA CASC15 2 OTTHUMG00000014345.5 ncRNA_host,overlapping_locus +51722 chr6 HAVANA gene 22569493 22571666 2174.0 + 0 ENSG00000112273.6 protein_coding HDGFL1 2 OTTHUMG00000016206.1 retrogene +51723 chr6 HAVANA gene 22589137 22593833 743.0 - 0 ENSG00000228772.2 lincRNA AL033539.1 2 OTTHUMG00000014347.2 +51724 chr6 HAVANA gene 22744395 23031780 871.0 - 0 ENSG00000233358.2 lincRNA AL035401.1 2 OTTHUMG00000014348.2 +51725 chr6 HAVANA gene 23102680 23103546 867.0 + 0 ENSG00000218476.2 processed_pseudogene AL591416.1 1 OTTHUMG00000014349.2 pseudo_consens +51726 chr6 ENSEMBL gene 23124981 23125087 107.0 - 0 ENSG00000207394.1 snRNA RNU6-1060P 3 +51727 chr6 HAVANA gene 23337711 23346560 312.0 + 0 ENSG00000235743.1 lincRNA AL139231.1 2 OTTHUMG00000014350.1 +51728 chr6 HAVANA gene 23649496 23649774 279.0 + 0 ENSG00000219453.1 processed_pseudogene AL133270.1 2 OTTHUMG00000014351.1 +51729 chr6 HAVANA gene 23854444 23855457 1014.0 + 0 ENSG00000278128.1 processed_pseudogene AL139093.1 2 OTTHUMG00000187598.1 +51730 chr6 HAVANA gene 23856698 23856818 121.0 - 0 ENSG00000218512.2 processed_pseudogene SPTLC1P2 1 OTTHUMG00000014352.2 pseudo_consens +51731 chr6 HAVANA gene 23971879 23972941 1063.0 + 0 ENSG00000220748.2 processed_pseudogene AL032822.1 1 OTTHUMG00000016113.3 pseudo_consens +51732 chr6 HAVANA gene 24001824 24002433 610.0 + 0 ENSG00000219582.3 processed_pseudogene HNRNPA1P58 1 OTTHUMG00000014353.3 pseudo_consens +51733 chr6 HAVANA gene 24126122 24154900 4185.0 + 0 ENSG00000152954.11 protein_coding NRSN1 2 OTTHUMG00000016406.3 +51734 chr6 ENSEMBL gene 24166273 24166374 102.0 + 0 ENSG00000251830.1 snoRNA RF00218 3 +51735 chr6 HAVANA gene 24171756 24358052 4996.0 - 0 ENSG00000146038.11 protein_coding DCDC2 2 OTTHUMG00000016275.1 +51736 chr6 HAVANA gene 24356903 24358284 1382.0 + 0 ENSG00000146049.1 protein_coding KAAG1 2 OTTHUMG00000014354.1 +51737 chr6 ENSEMBL gene 24365651 24365754 104.0 + 0 ENSG00000202050.1 snRNA RNU6-391P 3 +51738 chr6 HAVANA gene 24402908 24426194 5133.0 + 0 ENSG00000124532.14 protein_coding MRS2 2 OTTHUMG00000014355.2 +51739 chr6 HAVANA gene 24424565 24495205 4919.0 - 0 ENSG00000112293.14 protein_coding GPLD1 2 OTTHUMG00000016104.2 +51740 chr6 HAVANA gene 24494852 24537207 5525.0 + 0 ENSG00000112294.12 protein_coding ALDH5A1 1 OTTHUMG00000014356.2 +51741 chr6 HAVANA gene 24598012 24599790 1458.0 + 0 ENSG00000218186.2 processed_pseudogene KRT8P43 1 OTTHUMG00000014357.2 pseudo_consens +51742 chr6 HAVANA gene 24544104 24646155 7172.0 - 0 ENSG00000137261.13 protein_coding KIAA0319 2 OTTHUMG00000014358.1 +51743 chr6 HAVANA gene 24649977 24667033 3082.0 - 0 ENSG00000111802.13 protein_coding TDP2 2 OTTHUMG00000014360.1 +51744 chr6 HAVANA gene 24700907 24701793 887.0 - 0 ENSG00000272345.1 antisense AL031775.1 2 OTTHUMG00000185688.1 +51745 chr6 HAVANA gene 24667035 24705065 4394.0 + 0 ENSG00000112304.10 protein_coding ACOT13 2 OTTHUMG00000014359.2 +51746 chr6 HAVANA gene 24706747 24707151 405.0 + 0 ENSG00000272402.1 antisense AL031775.2 2 OTTHUMG00000185689.1 +51747 chr6 HAVANA gene 24704861 24720836 4134.0 - 0 ENSG00000112308.12 protein_coding C6orf62 2 OTTHUMG00000014361.1 +51748 chr6 HAVANA gene 24750671 24751625 562.0 - 0 ENSG00000218806.2 processed_pseudogene AL133264.1 1 OTTHUMG00000014362.4 pseudo_consens +51749 chr6 HAVANA gene 24742302 24751921 557.0 + 0 ENSG00000224164.1 lincRNA AL133264.2 1 OTTHUMG00000153468.1 +51750 chr6 HAVANA gene 24774931 24786099 2476.0 + 0 ENSG00000112312.9 protein_coding GMNN 2 OTTHUMG00000014363.4 +51751 chr6 HAVANA gene 24797321 24798889 814.0 - 0 ENSG00000260286.3 protein_coding ARMH2 2 OTTHUMG00000177257.2 overlapping_locus +51752 chr6 HAVANA gene 24797373 24809798 654.0 - 0 ENSG00000282804.1 protein_coding AL512428.1 2 OTTHUMG00000014375.3 overlapping_locus +51753 chr6 HAVANA gene 24947880 24948344 465.0 + 0 ENSG00000217083.1 processed_pseudogene MTCO2P33 2 OTTHUMG00000014376.1 +51754 chr6 HAVANA gene 24976419 24976982 499.0 + 0 ENSG00000214975.4 processed_pseudogene PPIAP29 1 OTTHUMG00000014377.2 pseudo_consens +51755 chr6 HAVANA gene 25023247 25024483 1237.0 - 0 ENSG00000220517.2 processed_pseudogene ASS1P1 1 OTTHUMG00000014378.2 pseudo_consens,overlapping_locus +51756 chr6 ENSEMBL gene 25031009 25031287 279.0 - 0 ENSG00000244618.3 misc_RNA RN7SL334P 3 +51757 chr6 HAVANA gene 24804281 25042170 9536.0 - 0 ENSG00000111913.18 protein_coding RIPOR2 2 OTTHUMG00000191459.13 ncRNA_host,overlapping_locus +51758 chr6 HAVANA gene 25041839 25056664 577.0 + 0 ENSG00000229313.1 antisense AL133268.3 2 OTTHUMG00000014382.1 +51759 chr6 HAVANA gene 25053627 25057073 430.0 - 0 ENSG00000223623.1 lincRNA AL133268.2 2 OTTHUMG00000014379.1 +51760 chr6 HAVANA gene 25061796 25134971 919.0 + 0 ENSG00000285801.1 antisense AL133268.4 2 OTTHUMG00000193142.1 +51761 chr6 HAVANA gene 25140003 25141403 1401.0 + 0 ENSG00000219682.4 processed_pseudogene AL133268.1 1 OTTHUMG00000014381.2 pseudo_consens +51762 chr6 HAVANA gene 25152547 25152883 337.0 + 0 ENSG00000262400.1 processed_pseudogene AL590084.3 1 OTTHUMG00000014383.2 pseudo_consens +51763 chr6 HAVANA gene 25181359 25181745 387.0 + 0 ENSG00000217805.2 processed_pseudogene AL590084.1 1 OTTHUMG00000014384.2 pseudo_consens +51764 chr6 HAVANA gene 25218688 25219069 382.0 + 0 ENSG00000219681.2 processed_pseudogene AL590084.2 1 OTTHUMG00000014386.2 pseudo_consens +51765 chr6 HAVANA gene 25248263 25248779 517.0 + 0 ENSG00000271108.1 processed_pseudogene KATNBL1P5 1 OTTHUMG00000184546.1 pseudo_consens +51766 chr6 HAVANA gene 25261239 25261731 493.0 + 0 ENSG00000216718.7 processed_pseudogene AL024509.2 1 OTTHUMG00000014387.2 pseudo_consens +51767 chr6 HAVANA gene 25272200 25273751 927.0 - 0 ENSG00000213972.3 processed_pseudogene AL024509.1 1 OTTHUMG00000014388.2 pseudo_consens +51768 chr6 ENSEMBL gene 25287432 25287533 102.0 - 0 ENSG00000207286.1 misc_RNA RF00019 3 +51769 chr6 ENSEMBL gene 25383599 25383702 104.0 + 0 ENSG00000207490.1 snRNA RNU6-987P 3 +51770 chr6 HAVANA gene 25061626 25452263 8477.0 - 0 ENSG00000168405.17 transcribed_unitary_pseudogene CMAHP 2 OTTHUMG00000016099.6 +51771 chr6 HAVANA gene 25279078 25620530 6799.0 + 0 ENSG00000079691.17 protein_coding CARMIL1 1 OTTHUMG00000014393.5 ncRNA_host +51772 chr6 HAVANA gene 25678769 25679164 396.0 - 0 ENSG00000217408.2 processed_pseudogene PRELID1P2 1 OTTHUMG00000014392.2 pseudo_consens +51773 chr6 HAVANA gene 25652201 25701783 1482.0 + 0 ENSG00000079689.13 protein_coding SCGN 2 OTTHUMG00000014409.1 +51774 chr6 HAVANA gene 25726132 25726527 396.0 - 0 ENSG00000164508.4 protein_coding HIST1H2AA 2 OTTHUMG00000014407.2 +51775 chr6 HAVANA gene 25726777 25727292 516.0 + 0 ENSG00000146047.6 protein_coding HIST1H2BA 2 OTTHUMG00000014408.3 +51776 chr6 HAVANA gene 25731782 25732091 310.0 - 0 ENSG00000178762.4 unprocessed_pseudogene HIST1H2BPS1 2 OTTHUMG00000014406.2 +51777 chr6 HAVANA gene 25732497 25732827 331.0 + 0 ENSG00000216436.2 unprocessed_pseudogene HIST1H2APS1 2 OTTHUMG00000014405.2 +51778 chr6 HAVANA gene 25754699 25781191 4633.0 + 0 ENSG00000146039.10 protein_coding SLC17A4 2 OTTHUMG00000014410.1 +51779 chr6 HAVANA gene 25782897 25832059 2044.0 - 0 ENSG00000124568.10 protein_coding SLC17A1 2 OTTHUMG00000016297.3 +51780 chr6 HAVANA gene 25833066 25882286 3594.0 - 0 ENSG00000124564.17 protein_coding SLC17A3 2 OTTHUMG00000014412.6 overlapping_locus +51781 chr6 HAVANA gene 25882026 25882395 370.0 - 0 ENSG00000242387.1 transcribed_processed_pseudogene HIST1H2APS2 2 OTTHUMG00000187599.1 +51782 chr6 HAVANA gene 25885419 25885751 333.0 + 0 ENSG00000277410.1 processed_pseudogene AL138726.1 2 OTTHUMG00000014411.2 +51783 chr6 HAVANA gene 25912754 25930726 2568.0 - 0 ENSG00000112337.10 protein_coding SLC17A2 2 OTTHUMG00000014413.1 +51784 chr6 HAVANA gene 25962802 25991226 9413.0 + 0 ENSG00000112343.10 protein_coding TRIM38 2 OTTHUMG00000014414.4 +51785 chr6 HAVANA gene 25983812 25999167 354.0 - 0 ENSG00000272558.1 antisense U91328.2 2 OTTHUMG00000185899.1 +51786 chr6 HAVANA gene 25992662 26001775 4130.0 + 0 ENSG00000272462.2 lincRNA U91328.1 2 OTTHUMG00000185699.2 +51787 chr6 HAVANA gene 26013241 26013757 517.0 + 0 ENSG00000272810.1 lincRNA U91328.3 2 OTTHUMG00000185901.1 +51788 chr6 HAVANA gene 26016379 26016601 223.0 + 0 ENSG00000224447.1 unprocessed_pseudogene HIST1H1PS2 2 OTTHUMG00000036301.1 +51789 chr6 HAVANA gene 26017085 26017732 648.0 - 0 ENSG00000124610.4 protein_coding HIST1H1A 2 OTTHUMG00000016413.2 +51790 chr6 HAVANA gene 26020490 26020900 411.0 + 0 ENSG00000275714.1 protein_coding HIST1H3A 2 OTTHUMG00000014418.2 +51791 chr6 HAVANA gene 26021679 26021990 312.0 + 0 ENSG00000278637.1 protein_coding HIST1H4A 2 OTTHUMG00000014419.2 +51792 chr6 HAVANA gene 26026815 26027252 438.0 - 0 ENSG00000278705.1 protein_coding HIST1H4B 2 OTTHUMG00000014417.2 +51793 chr6 HAVANA gene 26031650 26032060 411.0 - 0 ENSG00000274267.1 protein_coding HIST1H3B 2 OTTHUMG00000014415.2 +51794 chr6 HAVANA gene 26033176 26033568 393.0 - 0 ENSG00000278463.1 protein_coding HIST1H2AB 2 OTTHUMG00000014420.2 +51795 chr6 HAVANA gene 26043277 26043657 381.0 - 0 ENSG00000276410.3 protein_coding HIST1H2BB 2 OTTHUMG00000014421.2 +51796 chr6 HAVANA gene 26043989 26044357 369.0 + 0 ENSG00000234816.2 unprocessed_pseudogene HIST1H2APS5 2 OTTHUMG00000037055.1 +51797 chr6 HAVANA gene 26045411 26045821 411.0 + 0 ENSG00000278272.1 protein_coding HIST1H3C 2 OTTHUMG00000014416.2 +51798 chr6 HAVANA gene 26055787 26056428 642.0 - 0 ENSG00000187837.3 protein_coding HIST1H1C 2 OTTHUMG00000016140.2 +51799 chr6 HAVANA gene 26087281 26098343 5675.0 + 0 ENSG00000010704.18 protein_coding HFE 1 OTTHUMG00000016348.3 +51800 chr6 HAVANA gene 26103876 26104310 435.0 + 0 ENSG00000197061.4 protein_coding HIST1H4C 2 OTTHUMG00000014429.2 +51801 chr6 HAVANA gene 26107419 26108136 718.0 - 0 ENSG00000187475.5 protein_coding HIST1H1T 2 OTTHUMG00000014430.2 +51802 chr6 HAVANA gene 26114873 26123926 834.0 - 0 ENSG00000180596.7 protein_coding HIST1H2BC 2 OTTHUMG00000014425.4 +51803 chr6 HAVANA gene 26124145 26139116 1668.0 + 0 ENSG00000180573.9 protein_coding HIST1H2AC 2 OTTHUMG00000014428.2 +51804 chr6 HAVANA gene 26156354 26157107 754.0 + 0 ENSG00000168298.6 protein_coding HIST1H1E 2 OTTHUMG00000014422.3 +51805 chr6 HAVANA gene 26164072 26164363 292.0 + 0 ENSG00000217159.2 processed_pseudogene LARP1P1 1 OTTHUMG00000014424.2 pseudo_consens,overlapping_locus +51806 chr6 HAVANA gene 26158146 26171349 871.0 + 0 ENSG00000158373.8 protein_coding HIST1H2BD 2 OTTHUMG00000014426.1 overlapping_locus +51807 chr6 HAVANA gene 26160765 26172802 1578.0 - 0 ENSG00000283064.1 antisense AL353759.1 2 OTTHUMG00000191593.1 +51808 chr6 HAVANA gene 26172059 26184655 2585.0 + 0 ENSG00000274290.2 protein_coding HIST1H2BE 2 OTTHUMG00000014427.2 +51809 chr6 HAVANA gene 26188765 26189076 312.0 - 0 ENSG00000277157.1 protein_coding HIST1H4D 2 OTTHUMG00000014423.2 +51810 chr6 HAVANA gene 26195554 26196633 574.0 + 0 ENSG00000216331.2 unprocessed_pseudogene HIST1H1PS1 2 OTTHUMG00000014431.3 +51811 chr6 HAVANA gene 26196840 26197250 411.0 - 0 ENSG00000197409.7 protein_coding HIST1H3D 2 OTTHUMG00000014433.2 overlapping_locus +51812 chr6 HAVANA gene 26198851 26199243 393.0 - 0 ENSG00000196866.2 protein_coding HIST1H2AD 2 OTTHUMG00000014437.2 overlapping_locus +51813 chr6 HAVANA gene 26195595 26199293 1637.0 - 0 ENSG00000282988.2 protein_coding AL031777.3 2 OTTHUMG00000191594.3 overlapping_locus +51814 chr6 HAVANA gene 26199520 26200715 1196.0 + 0 ENSG00000277224.2 protein_coding HIST1H2BF 2 OTTHUMG00000014445.3 +51815 chr6 HAVANA gene 26202156 26202654 499.0 + 0 ENSG00000217275.2 processed_pseudogene AL031777.1 1 OTTHUMG00000014442.2 pseudo_consens +51816 chr6 HAVANA gene 26204552 26206038 1487.0 + 0 ENSG00000276966.2 protein_coding HIST1H4E 2 OTTHUMG00000014441.3 +51817 chr6 HAVANA gene 26215159 26216692 1534.0 - 0 ENSG00000273802.2 protein_coding HIST1H2BG 2 OTTHUMG00000014446.3 +51818 chr6 HAVANA gene 26216975 26217483 509.0 + 0 ENSG00000277075.2 protein_coding HIST1H2AE 2 OTTHUMG00000014440.3 +51819 chr6 HAVANA gene 26219045 26219240 196.0 + 0 ENSG00000277720.1 unprocessed_pseudogene AL031777.2 2 OTTHUMG00000187721.1 +51820 chr6 HAVANA gene 26224199 26227473 2679.0 + 0 ENSG00000274750.2 protein_coding HIST1H3E 2 OTTHUMG00000014434.3 +51821 chr6 HAVANA gene 26233122 26233255 134.0 + 0 ENSG00000218281.1 unprocessed_pseudogene HIST1H2APS3 2 OTTHUMG00000014439.1 +51822 chr6 HAVANA gene 26234268 26234933 666.0 - 0 ENSG00000124575.6 protein_coding HIST1H1D 2 OTTHUMG00000014432.2 +51823 chr6 HAVANA gene 26240426 26240737 312.0 + 0 ENSG00000274618.1 protein_coding HIST1H4F 2 OTTHUMG00000014443.2 +51824 chr6 HAVANA gene 26246681 26246977 297.0 - 0 ENSG00000275663.1 protein_coding HIST1H4G 2 OTTHUMG00000014444.2 +51825 chr6 HAVANA gene 26250195 26250605 411.0 - 0 ENSG00000277775.1 protein_coding HIST1H3F 2 OTTHUMG00000014435.2 +51826 chr6 HAVANA gene 26251651 26253710 2060.0 + 0 ENSG00000275713.2 protein_coding HIST1H2BH 2 OTTHUMG00000014447.3 +51827 chr6 HAVANA gene 26269405 26271815 2411.0 - 0 ENSG00000273983.1 protein_coding HIST1H3G 2 OTTHUMG00000014436.2 +51828 chr6 HAVANA gene 26272021 26272701 681.0 - 0 ENSG00000218690.2 transcribed_unprocessed_pseudogene HIST1H2APS4 1 OTTHUMG00000014438.3 pseudo_consens +51829 chr6 HAVANA gene 26272976 26273356 381.0 + 0 ENSG00000278588.1 protein_coding HIST1H2BI 2 OTTHUMG00000014448.2 +51830 chr6 HAVANA gene 26277609 26285638 2163.0 - 0 ENSG00000158406.4 protein_coding HIST1H4H 2 OTTHUMG00000014454.2 +51831 chr6 HAVANA gene 26321876 26322292 417.0 - 0 ENSG00000220875.1 processed_pseudogene HIST1H3PS1 1 OTTHUMG00000014455.1 pseudo_consens +51832 chr6 HAVANA gene 26365159 26378320 7042.0 + 0 ENSG00000186470.13 protein_coding BTN3A2 2 OTTHUMG00000014450.6 +51833 chr6 HAVANA gene 26383096 26394874 6398.0 + 0 ENSG00000124508.16 protein_coding BTN2A2 1 OTTHUMG00000014452.4 +51834 chr6 HAVANA gene 26402237 26415216 5547.0 + 0 ENSG00000026950.16 protein_coding BTN3A1 2 OTTHUMG00000014449.5 +51835 chr6 HAVANA gene 26421391 26432383 4177.0 + 0 ENSG00000124549.14 transcribed_unprocessed_pseudogene BTN2A3P 2 OTTHUMG00000014453.5 +51836 chr6 HAVANA gene 26440472 26453415 5658.0 + 0 ENSG00000111801.15 protein_coding BTN3A3 2 OTTHUMG00000014451.5 +51837 chr6 HAVANA gene 26457904 26476621 3787.0 + 0 ENSG00000112763.16 protein_coding BTN2A1 1 OTTHUMG00000014457.5 +51838 chr6 HAVANA gene 26477872 26478533 662.0 + 0 ENSG00000284688.1 unprocessed_pseudogene AL121936.2 2 OTTHUMG00000192353.1 +51839 chr6 HAVANA gene 26501221 26510422 2895.0 + 0 ENSG00000124557.12 protein_coding BTN1A1 2 OTTHUMG00000016358.1 +51840 chr6 ENSEMBL gene 26519351 26519458 108.0 - 0 ENSG00000199289.1 snRNA RNU6-502P 3 +51841 chr6 HAVANA gene 26521709 26527404 5696.0 + 0 ENSG00000228223.3 lincRNA HCG11 2 OTTHUMG00000014456.4 +51842 chr6 HAVANA gene 26538405 26546254 1274.0 + 0 ENSG00000182952.4 protein_coding HMGN4 2 OTTHUMG00000014458.2 retrogene +51843 chr6 HAVANA gene 26569324 26574698 2884.0 + 0 ENSG00000284607.1 lincRNA AL121936.1 2 OTTHUMG00000192354.1 +51844 chr6 HAVANA gene 26596952 26600744 2949.0 + 0 ENSG00000146109.4 protein_coding ABT1 2 OTTHUMG00000016319.2 +51845 chr6 HAVANA gene 26602733 26606661 3929.0 + 0 ENSG00000275846.1 lincRNA AL513548.3 2 OTTHUMG00000188367.1 +51846 chr6 HAVANA gene 26611903 26613109 1207.0 - 0 ENSG00000271071.1 processed_pseudogene AL513548.2 1 OTTHUMG00000184609.1 pseudo_consens +51847 chr6 HAVANA gene 26634383 26659752 5059.0 - 0 ENSG00000181315.10 protein_coding ZNF322 2 OTTHUMG00000014460.4 overlapping_locus +51848 chr6 HAVANA gene 26677003 26683211 1114.0 + 0 ENSG00000285571.1 lincRNA AL513548.4 2 OTTHUMG00000193220.1 +51849 chr6 HAVANA gene 26686241 26687964 1724.0 + 0 ENSG00000261584.1 lincRNA AL513548.1 2 OTTHUMG00000175906.2 +51850 chr6 HAVANA gene 26896952 26898777 1826.0 + 0 ENSG00000243307.2 processed_pseudogene POM121L6P 2 OTTHUMG00000150352.2 +51851 chr6 HAVANA gene 26871484 26956554 2071.0 - 0 ENSG00000241549.8 transcribed_unprocessed_pseudogene GUSBP2 2 OTTHUMG00000014462.5 +51852 chr6 HAVANA gene 27001208 27001648 441.0 - 0 ENSG00000272312.1 lincRNA AL133255.1 2 OTTHUMG00000185708.1 +51853 chr6 HAVANA gene 26956992 27023924 6481.0 + 0 ENSG00000224843.6 lincRNA LINC00240 2 OTTHUMG00000014466.2 +51854 chr6 HAVANA gene 27033435 27034310 876.0 - 0 ENSG00000220581.1 unitary_pseudogene VN1R12P 2 OTTHUMG00000014465.1 +51855 chr6 HAVANA gene 27060365 27061249 885.0 - 0 ENSG00000216762.1 processed_pseudogene VN1R13P 2 OTTHUMG00000014467.1 +51856 chr6 HAVANA gene 27083280 27084147 868.0 + 0 ENSG00000219770.1 unitary_pseudogene VN1R11P 2 OTTHUMG00000014472.1 +51857 chr6 ENSEMBL gene 27109790 27109980 191.0 - 0 ENSG00000222800.1 snRNA RNU2-62P 3 +51858 chr6 HAVANA gene 27122657 27123221 565.0 - 0 ENSG00000272468.1 lincRNA AL021807.1 2 OTTHUMG00000185709.1 +51859 chr6 HAVANA gene 27125897 27132750 950.0 - 0 ENSG00000124635.8 protein_coding HIST1H2BJ 2 OTTHUMG00000014470.4 +51860 chr6 HAVANA gene 27133042 27135291 2250.0 + 0 ENSG00000196787.3 protein_coding HIST1H2AG 2 OTTHUMG00000014469.1 +51861 chr6 HAVANA gene 27138588 27139881 1294.0 + 0 ENSG00000276180.1 protein_coding HIST1H4I 2 OTTHUMG00000014471.1 +51862 chr6 HAVANA gene 27146418 27146798 381.0 - 0 ENSG00000197903.7 protein_coding HIST1H2BK 2 OTTHUMG00000014473.2 +51863 chr6 HAVANA gene 27147129 27147515 387.0 + 0 ENSG00000274997.1 protein_coding HIST1H2AH 2 OTTHUMG00000014468.2 +51864 chr6 ENSEMBL gene 27147626 27147688 63.0 + 0 ENSG00000265565.1 miRNA MIR3143 3 +51865 chr6 HAVANA gene 27211244 27211913 670.0 + 0 ENSG00000174572.3 processed_pseudogene RPL10P2 1 OTTHUMG00000014474.2 pseudo_consens +51866 chr6 HAVANA gene 27247701 27256624 5290.0 + 0 ENSG00000112812.15 protein_coding PRSS16 1 OTTHUMG00000016167.4 +51867 chr6 HAVANA gene 27268113 27269229 1117.0 + 0 ENSG00000270935.1 processed_pseudogene AL021808.1 1 OTTHUMG00000184545.1 pseudo_consens +51868 chr6 HAVANA gene 27285903 27312170 3354.0 - 0 ENSG00000158553.4 protein_coding POM121L2 1 OTTHUMG00000014475.3 retrogene +51869 chr6 HAVANA gene 27324894 27325768 875.0 + 0 ENSG00000220758.4 unprocessed_pseudogene VN1R10P 2 OTTHUMG00000016326.1 +51870 chr6 HAVANA gene 27357825 27360221 2397.0 - 0 ENSG00000204789.4 processed_pseudogene ZNF204P 2 OTTHUMG00000016415.1 +51871 chr6 HAVANA gene 27374615 27403904 4834.0 + 0 ENSG00000124613.8 protein_coding ZNF391 2 OTTHUMG00000014477.5 +51872 chr6 HAVANA gene 27404010 27406964 2955.0 - 0 ENSG00000271755.1 lincRNA AL031118.1 2 OTTHUMG00000185710.1 +51873 chr6 HAVANA gene 27407697 27407996 300.0 + 0 ENSG00000237154.2 processed_pseudogene MCFD2P1 1 OTTHUMG00000014476.2 pseudo_consens +51874 chr6 HAVANA gene 27454568 27457575 1591.0 + 0 ENSG00000285849.1 antisense AL021918.4 2 OTTHUMG00000192917.1 +51875 chr6 HAVANA gene 27450743 27473118 3122.0 - 0 ENSG00000096654.15 protein_coding ZNF184 2 OTTHUMG00000014478.1 +51876 chr6 HAVANA gene 27510501 27510694 194.0 + 0 ENSG00000278332.1 processed_pseudogene AL021918.2 2 OTTHUMG00000187603.1 +51877 chr6 HAVANA gene 27515039 27515274 236.0 - 0 ENSG00000270666.1 processed_pseudogene AL021918.1 1 OTTHUMG00000184605.2 pseudo_consens +51878 chr6 HAVANA gene 27491422 27519435 524.0 - 0 ENSG00000285703.1 lincRNA AL021918.3 2 OTTHUMG00000192823.1 +51879 chr6 HAVANA gene 27523076 27524339 944.0 + 0 ENSG00000218347.2 processed_pseudogene HNRNPA1P1 1 OTTHUMG00000014479.2 pseudo_consens +51880 chr6 HAVANA gene 27560822 27561744 572.0 - 0 ENSG00000219738.2 processed_pseudogene CD83P1 2 OTTHUMG00000014480.2 +51881 chr6 ENSEMBL gene 27596412 27596517 106.0 + 0 ENSG00000206671.1 snRNA RNU6-471P 3 +51882 chr6 HAVANA gene 27652602 27652825 224.0 - 0 ENSG00000216676.2 processed_pseudogene AL031229.1 1 OTTHUMG00000016339.2 pseudo_consens +51883 chr6 HAVANA gene 27694035 27710222 3490.0 + 0 ENSG00000281706.2 lincRNA LINC01012 2 OTTHUMG00000189539.1 +51884 chr6 HAVANA gene 27737000 27738494 1495.0 - 0 ENSG00000216915.2 processed_pseudogene GPR89P 1 OTTHUMG00000014481.2 pseudo_consens +51885 chr6 HAVANA gene 27780619 27781111 493.0 - 0 ENSG00000218069.2 processed_pseudogene RSL24D1P1 1 OTTHUMG00000014482.2 pseudo_consens +51886 chr6 HAVANA gene 27807075 27807339 265.0 + 0 ENSG00000217862.2 processed_pseudogene HIST1H4PS1 2 OTTHUMG00000016429.2 +51887 chr6 HAVANA gene 27807444 27807931 488.0 - 0 ENSG00000185130.5 protein_coding HIST1H2BL 2 OTTHUMG00000014485.1 +51888 chr6 HAVANA gene 27808199 27808701 503.0 + 0 ENSG00000196747.4 protein_coding HIST1H2AI 2 OTTHUMG00000014484.1 +51889 chr6 HAVANA gene 27810064 27811300 1237.0 + 0 ENSG00000278828.1 protein_coding HIST1H3H 2 OTTHUMG00000014483.1 +51890 chr6 HAVANA gene 27814354 27814740 387.0 - 0 ENSG00000276368.1 protein_coding HIST1H2AJ 2 OTTHUMG00000014486.2 +51891 chr6 HAVANA gene 27815044 27815424 381.0 + 0 ENSG00000273703.1 protein_coding HIST1H2BM 2 OTTHUMG00000014489.2 +51892 chr6 HAVANA gene 27824108 27824480 373.0 + 0 ENSG00000197238.4 protein_coding HIST1H4J 2 OTTHUMG00000014487.1 +51893 chr6 HAVANA gene 27831216 27831527 312.0 - 0 ENSG00000273542.1 protein_coding HIST1H4K 2 OTTHUMG00000014488.2 +51894 chr6 HAVANA gene 27837947 27838339 393.0 - 0 ENSG00000275221.1 protein_coding HIST1H2AK 2 OTTHUMG00000016382.2 +51895 chr6 HAVANA gene 27864062 27864401 340.0 - 0 ENSG00000217646.1 processed_pseudogene HIST1H2BPS2 2 OTTHUMG00000014491.1 +51896 chr6 HAVANA gene 27865355 27865747 393.0 + 0 ENSG00000276903.1 protein_coding HIST1H2AL 2 OTTHUMG00000014492.2 +51897 chr6 HAVANA gene 27837760 27865798 5477.0 + 0 ENSG00000233822.4 protein_coding HIST1H2BN 2 OTTHUMG00000016397.2 +51898 chr6 HAVANA gene 27866849 27867529 681.0 - 0 ENSG00000184357.4 protein_coding HIST1H1B 2 OTTHUMG00000016139.2 +51899 chr6 HAVANA gene 27871905 27872315 411.0 - 0 ENSG00000275379.1 protein_coding HIST1H3I 2 OTTHUMG00000016184.2 +51900 chr6 HAVANA gene 27873199 27873510 312.0 - 0 ENSG00000275126.1 protein_coding HIST1H4L 2 OTTHUMG00000016211.2 +51901 chr6 HAVANA gene 27890382 27893106 775.0 - 0 ENSG00000197153.4 protein_coding HIST1H3J 1 OTTHUMG00000016185.3 overlapping_locus +51902 chr6 HAVANA gene 27892757 27893149 393.0 - 0 ENSG00000278677.1 protein_coding HIST1H2AM 2 OTTHUMG00000014494.2 overlapping_locus +51903 chr6 HAVANA gene 27893463 27893843 381.0 + 0 ENSG00000274641.1 protein_coding HIST1H2BO 2 OTTHUMG00000014493.2 +51904 chr6 ENSEMBL gene 27897504 27897566 63.0 - 0 ENSG00000238610.1 snRNA RNU7-26P 3 +51905 chr6 HAVANA gene 27911185 27912396 1212.0 - 0 ENSG00000168131.4 protein_coding OR2B2 2 OTTHUMG00000014495.2 +51906 chr6 HAVANA gene 27937465 27938403 939.0 + 0 ENSG00000168126.3 unprocessed_pseudogene OR2W6P 2 OTTHUMG00000014496.1 +51907 chr6 HAVANA gene 27957241 27958182 942.0 + 0 ENSG00000124657.1 protein_coding OR2B6 2 OTTHUMG00000014497.2 +51908 chr6 HAVANA gene 27965175 27965514 340.0 + 0 ENSG00000214374.2 processed_pseudogene RPLP2P1 1 OTTHUMG00000014498.2 pseudo_consens +51909 chr6 HAVANA gene 27977150 27978075 926.0 + 0 ENSG00000216629.1 unprocessed_pseudogene OR2W4P 2 OTTHUMG00000014499.1 +51910 chr6 HAVANA gene 28010723 28012355 1633.0 + 0 ENSG00000217539.2 processed_pseudogene IQCB2P 1 OTTHUMG00000014501.2 pseudo_consens +51911 chr6 ENSEMBL gene 28015568 28015777 210.0 + 0 ENSG00000199851.2 snoRNA RF00012 3 +51912 chr6 HAVANA gene 28033947 28034855 909.0 + 0 ENSG00000217315.1 unprocessed_pseudogene OR2W2P 2 OTTHUMG00000014500.1 +51913 chr6 HAVANA gene 28046434 28047367 934.0 + 0 ENSG00000187763.3 unprocessed_pseudogene OR2B7P 2 OTTHUMG00000014504.1 +51914 chr6 HAVANA gene 28053228 28054165 938.0 - 0 ENSG00000182477.5 unprocessed_pseudogene OR2B8P 2 OTTHUMG00000014507.1 +51915 chr6 HAVANA gene 28073316 28074260 945.0 + 0 ENSG00000220721.2 unprocessed_pseudogene OR1F12 2 OTTHUMG00000014506.3 +51916 chr6 HAVANA gene 28078792 28081130 686.0 - 0 ENSG00000272009.1 antisense AL121944.1 2 OTTHUMG00000185713.1 +51917 chr6 HAVANA gene 28080975 28089563 2107.0 + 0 ENSG00000197279.3 protein_coding ZNF165 2 OTTHUMG00000014505.1 +51918 chr6 HAVANA gene 28091154 28093664 1657.0 + 0 ENSG00000219891.2 transcribed_unprocessed_pseudogene ZSCAN12P1 2 OTTHUMG00000014502.2 +51919 chr6 HAVANA gene 28115628 28116551 924.0 + 0 ENSG00000219392.1 unprocessed_pseudogene ZNF602P 2 OTTHUMG00000014508.1 +51920 chr6 HAVANA gene 28124560 28130082 1328.0 + 0 ENSG00000196812.4 protein_coding ZSCAN16 2 OTTHUMG00000014509.1 +51921 chr6 HAVANA gene 28121795 28137293 2163.0 - 0 ENSG00000269293.2 antisense ZSCAN16-AS1 2 OTTHUMG00000184041.1 +51922 chr6 HAVANA gene 28136849 28139678 2830.0 + 0 ENSG00000261839.1 lincRNA AL358933.1 2 OTTHUMG00000175907.1 +51923 chr6 HAVANA gene 28141910 28159472 7565.0 + 0 ENSG00000198315.10 protein_coding ZKSCAN8 2 OTTHUMG00000014510.2 +51924 chr6 HAVANA gene 28161769 28169594 2547.0 + 0 ENSG00000226314.8 transcribed_unprocessed_pseudogene ZNF192P1 2 OTTHUMG00000014513.3 +51925 chr6 HAVANA gene 28170845 28172521 1677.0 + 0 ENSG00000280107.1 TEC AL022393.1 2 OTTHUMG00000175908.1 +51926 chr6 HAVANA gene 28176188 28176674 487.0 + 0 ENSG00000216901.1 unprocessed_pseudogene ZNF603P 2 OTTHUMG00000014516.1 +51927 chr6 HAVANA gene 28188050 28189432 1383.0 + 0 ENSG00000218016.2 unprocessed_pseudogene ZNF192P2 2 OTTHUMG00000014514.2 +51928 chr6 HAVANA gene 28217643 28218634 992.0 - 0 ENSG00000176933.5 processed_pseudogene TOB2P1 1 OTTHUMG00000014512.1 pseudo_consens +51929 chr6 HAVANA gene 28224886 28233482 3705.0 + 0 ENSG00000137185.12 protein_coding ZSCAN9 1 OTTHUMG00000014515.6 +51930 chr6 HAVANA gene 28244623 28252224 2375.0 - 0 ENSG00000187626.8 protein_coding ZKSCAN4 2 OTTHUMG00000014511.1 +51931 chr6 HAVANA gene 28259320 28260958 1639.0 + 0 ENSG00000189134.3 protein_coding NKAPL 2 OTTHUMG00000014517.1 retrogene +51932 chr6 HAVANA gene 28267010 28278224 2933.0 + 0 ENSG00000197062.11 protein_coding ZSCAN26 2 OTTHUMG00000014519.5 +51933 chr6 HAVANA gene 28267121 28281580 557.0 + 0 ENSG00000276302.1 protein_coding AL021997.3 2 OTTHUMG00000188236.1 overlapping_locus +51934 chr6 HAVANA gene 28281572 28302549 3100.0 + 0 ENSG00000137338.5 protein_coding PGBD1 2 OTTHUMG00000014520.2 +51935 chr6 HAVANA gene 28315613 28315883 271.0 - 0 ENSG00000273712.1 processed_pseudogene AL021997.2 2 OTTHUMG00000187604.1 +51936 chr6 HAVANA gene 28319660 28319852 193.0 - 0 ENSG00000270326.1 processed_pseudogene AL021997.1 1 OTTHUMG00000184600.1 pseudo_consens +51937 chr6 HAVANA gene 28324693 28356271 4957.0 - 0 ENSG00000235109.7 protein_coding ZSCAN31 1 OTTHUMG00000014518.5 +51938 chr6 HAVANA gene 28349914 28369177 4842.0 + 0 ENSG00000189298.13 protein_coding ZKSCAN3 2 OTTHUMG00000014521.3 +51939 chr6 HAVANA gene 28378955 28399734 5495.0 - 0 ENSG00000158691.14 protein_coding ZSCAN12 2 OTTHUMG00000014522.1 +51940 chr6 ENSEMBL gene 28410270 28410456 187.0 + 0 ENSG00000251877.1 snRNA RNU2-45P 3 +51941 chr6 HAVANA gene 28431930 28443502 3283.0 - 0 ENSG00000187987.9 protein_coding ZSCAN23 2 OTTHUMG00000016346.3 +51942 chr6 HAVANA gene 28446973 28447807 835.0 + 0 ENSG00000231162.4 processed_pseudogene COX11P1 1 OTTHUMG00000014524.1 pseudo_consens +51943 chr6 HAVANA gene 28455648 28456141 494.0 - 0 ENSG00000219262.1 unprocessed_pseudogene OR2E1P 2 OTTHUMG00000014523.1 +51944 chr6 HAVANA gene 28503296 28528215 2018.0 - 0 ENSG00000198704.9 protein_coding GPX6 1 OTTHUMG00000044828.6 +51945 chr6 HAVANA gene 28525925 28534952 2002.0 + 0 ENSG00000224586.6 protein_coding GPX5 2 OTTHUMG00000016307.2 +51946 chr6 HAVANA gene 28587378 28591747 2874.0 + 0 ENSG00000246350.1 antisense AL049543.1 2 OTTHUMG00000166291.1 +51947 chr6 HAVANA gene 28570535 28616212 8198.0 - 0 ENSG00000232040.3 protein_coding ZBED9 1 OTTHUMG00000016237.6 +51948 chr6 HAVANA gene 28633381 28633594 214.0 - 0 ENSG00000271440.1 processed_pseudogene AL121932.1 1 OTTHUMG00000184592.1 pseudo_consens +51949 chr6 HAVANA gene 28648286 28649066 537.0 - 0 ENSG00000235570.1 lincRNA LINC00533 1 OTTHUMG00000016245.1 +51950 chr6 HAVANA gene 28732017 28732904 888.0 + 0 ENSG00000237425.1 processed_pseudogene RPSAP2 1 OTTHUMG00000147353.2 pseudo_consens +51951 chr6 HAVANA gene 28783633 28784004 372.0 - 0 ENSG00000235559.1 processed_pseudogene NOP56P1 2 OTTHUMG00000031045.3 +51952 chr6 HAVANA gene 28837869 28839006 709.0 - 0 ENSG00000225173.1 lincRNA AL662890.1 1 OTTHUMG00000084883.1 +51953 chr6 HAVANA gene 28861416 28862047 632.0 + 0 ENSG00000213916.2 processed_pseudogene RPL13P 1 OTTHUMG00000031243.2 pseudo_consens +51954 chr6 HAVANA gene 28859625 28864630 3098.0 - 0 ENSG00000225595.2 lincRNA LINC01623 2 OTTHUMG00000084882.2 +51955 chr6 HAVANA gene 28888832 28889906 1075.0 - 0 ENSG00000233366.1 processed_pseudogene ZNF90P2 2 OTTHUMG00000031240.2 +51956 chr6 HAVANA gene 28896530 28897322 413.0 + 0 ENSG00000224157.1 antisense HCG14 1 OTTHUMG00000031281.1 +51957 chr6 ENSEMBL gene 28915645 28915744 100.0 + 0 ENSG00000212240.1 snRNA RNU6-930P 3 +51958 chr6 HAVANA gene 28903002 28923989 7986.0 - 0 ENSG00000204713.10 protein_coding TRIM27 2 OTTHUMG00000031215.2 +51959 chr6 HAVANA gene 28943877 28944537 466.0 + 0 ENSG00000204709.4 lincRNA LINC01556 2 OTTHUMG00000031148.1 +51960 chr6 HAVANA gene 28969130 28970460 1331.0 - 0 ENSG00000228666.1 processed_pseudogene KRT18P1 1 OTTHUMG00000031205.2 pseudo_consens +51961 chr6 ENSEMBL gene 28977475 28977773 299.0 + 0 ENSG00000263426.2 misc_RNA RN7SL471P 3 +51962 chr6 HAVANA gene 28986203 28987484 1032.0 + 0 ENSG00000227214.2 antisense HCG15 2 OTTHUMG00000031267.1 overlapping_locus +51963 chr6 HAVANA gene 28986800 28988536 317.0 + 0 ENSG00000244349.1 antisense AL662791.1 1 OTTHUMG00000031270.1 overlapping_locus +51964 chr6 HAVANA gene 28994785 29005316 3176.0 - 0 ENSG00000197935.6 protein_coding ZNF311 2 OTTHUMG00000031292.3 +51965 chr6 HAVANA gene 29026680 29027607 928.0 - 0 ENSG00000223677.1 unprocessed_pseudogene OR2AD1P 2 OTTHUMG00000031262.1 +51966 chr6 HAVANA gene 29044213 29045240 1028.0 - 0 ENSG00000204704.2 protein_coding OR2W1 2 OTTHUMG00000031048.4 +51967 chr6 HAVANA gene 29071824 29072599 776.0 - 0 ENSG00000236909.1 unprocessed_pseudogene OR2P1P 2 OTTHUMG00000031042.3 +51968 chr6 HAVANA gene 29036021 29076524 876.0 + 0 ENSG00000277661.4 antisense AL662791.2 2 OTTHUMG00000189247.1 +51969 chr6 HAVANA gene 29076573 29077168 596.0 - 0 ENSG00000228364.1 processed_pseudogene SAR1AP1 1 OTTHUMG00000031279.1 pseudo_consens +51970 chr6 HAVANA gene 29086208 29087313 1106.0 - 0 ENSG00000204703.5 protein_coding OR2B3 2 OTTHUMG00000031226.5 +51971 chr6 HAVANA gene 29099657 29102701 2295.0 + 0 ENSG00000204702.5 protein_coding OR2J1 2 OTTHUMG00000031280.5 +51972 chr6 HAVANA gene 29108059 29114770 3820.0 + 0 ENSG00000204701.2 protein_coding OR2J3 2 OTTHUMG00000031092.4 +51973 chr6 HAVANA gene 29124210 29128908 389.0 + 0 ENSG00000227206.1 lincRNA AL645937.2 2 OTTHUMG00000085915.1 +51974 chr6 HAVANA gene 29137410 29142934 1652.0 - 0 ENSG00000203492.4 transcribed_unprocessed_pseudogene AL645937.1 2 OTTHUMG00000031224.2 +51975 chr6 HAVANA gene 29162475 29166201 3727.0 - 0 ENSG00000284656.1 lincRNA AL645937.4 2 OTTHUMG00000192348.1 +51976 chr6 HAVANA gene 29170907 29175811 2708.0 + 0 ENSG00000204700.5 protein_coding OR2J2 2 OTTHUMG00000031091.5 +51977 chr6 HAVANA gene 29181510 29182445 936.0 + 0 ENSG00000224233.1 unprocessed_pseudogene OR2J4P 2 OTTHUMG00000031062.1 +51978 chr6 HAVANA gene 29212886 29216933 1883.0 + 0 ENSG00000230598.2 transcribed_unprocessed_pseudogene AL645937.3 2 OTTHUMG00000031233.3 +51979 chr6 HAVANA gene 29229227 29230157 931.0 - 0 ENSG00000213911.2 unprocessed_pseudogene OR2G1P 2 OTTHUMG00000031115.2 +51980 chr6 HAVANA gene 29262703 29264079 879.0 - 0 ENSG00000204697.3 unprocessed_pseudogene OR2U1P 2 OTTHUMG00000031040.2 +51981 chr6 HAVANA gene 29268462 29269421 960.0 - 0 ENSG00000242524.1 unprocessed_pseudogene OR2U2P 2 OTTHUMG00000031055.1 +51982 chr6 HAVANA gene 29223973 29292963 3544.0 + 0 ENSG00000197171.6 transcribed_unprocessed_pseudogene AL672167.1 2 OTTHUMG00000031195.3 +51983 chr6 HAVANA gene 29301701 29313017 6479.0 + 0 ENSG00000204695.4 protein_coding OR14J1 2 OTTHUMG00000031184.4 +51984 chr6 HAVANA gene 29329626 29331061 1436.0 - 0 ENSG00000230056.1 processed_pseudogene DDX6P1 1 OTTHUMG00000031293.2 pseudo_consens +51985 chr6 HAVANA gene 29373423 29375291 1869.0 - 0 ENSG00000112462.8 protein_coding OR12D3 2 OTTHUMG00000031051.3 +51986 chr6 HAVANA gene 29395631 29398008 1639.0 + 0 ENSG00000280236.3 protein_coding OR12D2 2 OTTHUMG00000031049.4 +51987 chr6 HAVANA gene 29414928 29418905 1712.0 + 0 ENSG00000251608.2 polymorphic_pseudogene OR12D1 2 OTTHUMG00000031141.6 +51988 chr6 HAVANA gene 29353749 29431967 2981.0 - 0 ENSG00000243729.4 protein_coding OR5V1 2 OTTHUMG00000031199.5 overlapping_locus +51989 chr6 HAVANA gene 29439306 29440977 1672.0 + 0 ENSG00000206474.8 protein_coding OR10C1 2 OTTHUMG00000031207.5 +51990 chr6 HAVANA gene 29450210 29450558 349.0 + 0 ENSG00000277881.1 processed_pseudogene AL645927.1 2 OTTHUMG00000187605.1 +51991 chr6 HAVANA gene 29425504 29457071 2864.0 - 0 ENSG00000204694.11 protein_coding OR11A1 2 OTTHUMG00000031225.3 overlapping_locus +51992 chr6 HAVANA gene 29457181 29464328 3708.0 + 0 ENSG00000204688.9 protein_coding OR2H1 2 OTTHUMG00000031050.4 +51993 chr6 HAVANA gene 29464596 29469806 382.0 - 0 ENSG00000225797.2 unprocessed_pseudogene UBDP1 2 OTTHUMG00000031258.3 +51994 chr6 HAVANA gene 29475025 29476071 1047.0 - 0 ENSG00000230164.1 unprocessed_pseudogene MAS1LP1 2 OTTHUMG00000086553.1 +51995 chr6 HAVANA gene 29486697 29487956 1260.0 - 0 ENSG00000204687.4 protein_coding MAS1L 2 OTTHUMG00000031089.2 +51996 chr6 HAVANA gene 29489271 29489676 406.0 - 0 ENSG00000213900.2 processed_pseudogene RPS17P1 1 OTTHUMG00000031086.1 pseudo_consens +51997 chr6 HAVANA gene 29497509 29510556 877.0 + 0 ENSG00000229274.1 lincRNA AL662860.1 2 OTTHUMG00000086581.1 +51998 chr6 HAVANA gene 29528750 29533665 4277.0 + 0 ENSG00000224582.6 processed_transcript LINC01015 2 OTTHUMG00000065812.5 +51999 chr6 HAVANA gene 29537704 29538787 1084.0 - 0 ENSG00000229281.1 unprocessed_pseudogene GPR53P 2 OTTHUMG00000031126.4 +52000 chr6 HAVANA gene 29550407 29557721 5365.0 + 0 ENSG00000237988.5 protein_coding OR2I1P 2 OTTHUMG00000031230.4 +52001 chr6 HAVANA gene 29555515 29559925 1087.0 - 0 ENSG00000213886.3 protein_coding UBD 2 OTTHUMG00000031289.3 overlapping_locus +52002 chr6 HAVANA gene 29573909 29574836 928.0 + 0 ENSG00000232173.2 unprocessed_pseudogene OR2H5P 2 OTTHUMG00000031261.1 +52003 chr6 HAVANA gene 29577459 29577748 290.0 + 0 ENSG00000227609.2 processed_pseudogene TMEM183AP1 1 OTTHUMG00000086663.1 pseudo_consens +52004 chr6 ENSEMBL gene 29582249 29582332 84.0 + 0 ENSG00000201330.1 snoRNA SNORD32B 3 +52005 chr6 HAVANA gene 29582508 29583025 518.0 + 0 ENSG00000231301.1 processed_pseudogene RPL13AP 1 OTTHUMG00000031039.1 pseudo_consens +52006 chr6 HAVANA gene 29585121 29590500 3276.0 + 0 ENSG00000204657.4 protein_coding OR2H2 2 OTTHUMG00000031052.3 +52007 chr6 HAVANA gene 29555629 29633976 8470.0 - 0 ENSG00000204681.10 protein_coding GABBR1 2 OTTHUMG00000031095.8 overlapping_locus +52008 chr6 HAVANA gene 29636060 29636343 284.0 - 0 ENSG00000235238.1 processed_pseudogene SUMO2P1 1 OTTHUMG00000031140.1 pseudo_consens +52009 chr6 HAVANA gene 29656981 29672372 3196.0 + 0 ENSG00000204655.11 protein_coding MOG 2 OTTHUMG00000031099.6 +52010 chr6 HAVANA gene 29672392 29681110 2149.0 - 0 ENSG00000204644.9 protein_coding ZFP57 2 OTTHUMG00000031158.4 +52011 chr6 HAVANA gene 29708125 29708547 423.0 - 0 ENSG00000233916.1 processed_pseudogene ZDHHC20P1 1 OTTHUMG00000086707.1 pseudo_consens +52012 chr6 HAVANA gene 29722981 29723971 991.0 - 0 ENSG00000225864.1 unprocessed_pseudogene AL645939.1 2 OTTHUMG00000130503.1 +52013 chr6 HAVANA gene 29726669 29727139 471.0 - 0 ENSG00000239257.1 transcribed_processed_pseudogene RPL23AP1 1 OTTHUMG00000031098.2 pseudo_consens,overlapping_locus +52014 chr6 HAVANA gene 29722775 29738528 4342.0 + 0 ENSG00000204642.13 protein_coding HLA-F 2 OTTHUMG00000031156.5 +52015 chr6 HAVANA gene 29748289 29748513 225.0 + 0 ENSG00000227758.1 unprocessed_pseudogene AL645939.2 2 OTTHUMG00000031159.2 +52016 chr6 HAVANA gene 29741731 29748969 1157.0 - 0 ENSG00000273340.1 transcribed_unprocessed_pseudogene MICE 2 OTTHUMG00000031084.4 overlapping_locus +52017 chr6 HAVANA gene 29726601 29749049 4179.0 - 0 ENSG00000214922.9 processed_transcript HLA-F-AS1 2 OTTHUMG00000185970.1 overlapping_locus +52018 chr6 ENSEMBL gene 29750371 29750472 102.0 + 0 ENSG00000199290.1 misc_RNA RF00019 3 +52019 chr6 HAVANA gene 29750729 29751148 420.0 - 0 ENSG00000235821.1 processed_pseudogene IFITM4P 1 OTTHUMG00000031097.2 pseudo_consens +52020 chr6 HAVANA gene 29751965 29752207 243.0 - 0 ENSG00000272236.1 lincRNA AL645939.4 2 OTTHUMG00000185717.1 +52021 chr6 HAVANA gene 29752573 29763295 1877.0 + 0 ENSG00000285761.1 lincRNA AL645939.5 2 OTTHUMG00000192694.1 +52022 chr6 HAVANA gene 29763258 29763392 135.0 - 0 ENSG00000270896.1 processed_pseudogene AL645939.3 2 OTTHUMG00000184571.1 +52023 chr6 HAVANA gene 29791753 29792750 998.0 - 0 ENSG00000176998.4 unprocessed_pseudogene HCG4 2 OTTHUMG00000035423.2 +52024 chr6 HAVANA gene 29790954 29797811 5662.0 + 0 ENSG00000181126.13 transcribed_unprocessed_pseudogene HLA-V 2 OTTHUMG00000031277.4 +52025 chr6 HAVANA gene 29800415 29802425 747.0 + 0 ENSG00000261548.1 unprocessed_pseudogene HLA-P 2 OTTHUMG00000172781.1 +52026 chr6 HAVANA gene 29803195 29803991 797.0 - 0 ENSG00000213880.3 processed_pseudogene RPL7AP7 1 OTTHUMG00000031297.2 pseudo_consens +52027 chr6 HAVANA gene 29812565 29812696 132.0 - 0 ENSG00000237042.1 unprocessed_pseudogene MICG 2 OTTHUMG00000031087.2 +52028 chr6 HAVANA gene 29827385 29828364 980.0 - 0 ENSG00000229142.1 unprocessed_pseudogene HCG4P8 2 OTTHUMG00000130505.1 +52029 chr6 HAVANA gene 29826967 29831125 1763.0 + 0 ENSG00000204632.11 protein_coding HLA-G 2 OTTHUMG00000031157.7 +52030 chr6 HAVANA gene 29871895 29873783 1889.0 - 0 ENSG00000281831.1 lincRNA HCP5B 2 OTTHUMG00000189541.1 +52031 chr6 HAVANA gene 29849550 29885615 3405.0 - 0 ENSG00000285799.1 transcribed_unprocessed_pseudogene AL645929.2 2 OTTHUMG00000031085.3 +52032 chr6 HAVANA gene 29887294 29888268 975.0 - 0 ENSG00000230521.1 unprocessed_pseudogene AL645929.1 2 OTTHUMG00000130509.1 +52033 chr6 HAVANA gene 29887752 29890482 1096.0 + 0 ENSG00000206341.7 unprocessed_pseudogene HLA-H 2 OTTHUMG00000031160.2 +52034 chr6 HAVANA gene 29896654 29897786 450.0 + 0 ENSG00000231130.1 unprocessed_pseudogene HLA-T 2 OTTHUMG00000031232.2 +52035 chr6 HAVANA gene 29906543 29906909 192.0 + 0 ENSG00000233677.1 unprocessed_pseudogene DDX39BP1 2 OTTHUMG00000130504.1 +52036 chr6 HAVANA gene 29907783 29908645 328.0 - 0 ENSG00000235963.1 unprocessed_pseudogene MCCD1P1 2 OTTHUMG00000130506.1 +52037 chr6 HAVANA gene 29925983 29926973 991.0 - 0 ENSG00000227262.3 unprocessed_pseudogene HCG4B 2 OTTHUMG00000031188.3 +52038 chr6 HAVANA gene 29926459 29929232 1046.0 + 0 ENSG00000230795.3 unprocessed_pseudogene HLA-K 2 OTTHUMG00000031162.3 +52039 chr6 HAVANA gene 29934101 29934286 186.0 + 0 ENSG00000228078.1 unprocessed_pseudogene HLA-U 2 OTTHUMG00000031245.2 +52040 chr6 HAVANA gene 29942075 29943067 993.0 - 0 ENSG00000227766.1 unprocessed_pseudogene AL671277.1 2 OTTHUMG00000031152.2 +52041 chr6 HAVANA gene 29941260 29945884 2710.0 + 0 ENSG00000206503.12 protein_coding HLA-A 2 OTTHUMG00000130501.1 +52042 chr6 HAVANA gene 29956596 29958570 771.0 + 0 ENSG00000235290.1 unprocessed_pseudogene HLA-W 2 OTTHUMG00000031242.3 +52043 chr6 HAVANA gene 29970801 29972464 813.0 - 0 ENSG00000229390.1 unprocessed_pseudogene MICD 2 OTTHUMG00000031082.2 +52044 chr6 HAVANA gene 29975112 29978410 700.0 + 0 ENSG00000204625.10 lincRNA HCG9 2 OTTHUMG00000031119.5 +52045 chr6 HAVANA gene 29993209 29993605 258.0 + 0 ENSG00000238024.1 unprocessed_pseudogene DDX39BP2 2 OTTHUMG00000130507.1 +52046 chr6 HAVANA gene 29994437 29995314 335.0 - 0 ENSG00000224312.1 unprocessed_pseudogene MCCD1P2 2 OTTHUMG00000130500.1 +52047 chr6 HAVANA gene 30006121 30007116 996.0 - 0 ENSG00000237669.1 unprocessed_pseudogene AL671277.2 2 OTTHUMG00000130502.1 +52048 chr6 HAVANA gene 30005971 30009956 1946.0 + 0 ENSG00000204622.11 transcribed_unprocessed_pseudogene HLA-J 2 OTTHUMG00000031161.4 +52049 chr6 HAVANA gene 30031713 30033003 984.0 + 0 ENSG00000232757.1 processed_pseudogene ETF1P1 1 OTTHUMG00000031163.2 pseudo_consens +52050 chr6 ENSEMBL gene 30035916 30035983 68.0 + 0 ENSG00000278104.1 misc_RNA RF02218 3 +52051 chr6 ENSEMBL gene 30058115 30058190 76.0 + 0 ENSG00000275856.1 misc_RNA RF02219 3 +52052 chr6 ENSEMBL gene 30061080 30061183 104.0 + 0 ENSG00000278773.1 misc_RNA RF02220 3 +52053 chr6 HAVANA gene 30001011 30061640 17538.0 - 0 ENSG00000204623.9 transcribed_unitary_pseudogene ZNRD1ASP 1 OTTHUMG00000191729.2 +52054 chr6 HAVANA gene 30058899 30064909 3672.0 + 0 ENSG00000066379.14 protein_coding ZNRD1 2 OTTHUMG00000031149.2 ncRNA_host +52055 chr6 HAVANA gene 30066709 30070333 2538.0 + 0 ENSG00000204619.7 protein_coding PPP1R11 2 OTTHUMG00000031260.3 +52056 chr6 HAVANA gene 30070266 30075887 2206.0 - 0 ENSG00000204618.8 protein_coding RNF39 2 OTTHUMG00000031288.3 +52057 chr6 HAVANA gene 30102897 30113106 3535.0 - 0 ENSG00000204616.10 protein_coding TRIM31 2 OTTHUMG00000031064.2 +52058 chr6 HAVANA gene 30105240 30114724 549.0 + 0 ENSG00000231226.1 antisense TRIM31-AS1 2 OTTHUMG00000130787.1 +52059 chr6 ENSEMBL gene 30132805 30132966 162.0 - 0 ENSG00000252228.1 snoRNA RF00554 3 +52060 chr6 HAVANA gene 30136108 30148735 2497.0 + 0 ENSG00000204614.8 protein_coding TRIM40 2 OTTHUMG00000031083.2 +52061 chr6 HAVANA gene 30151945 30160934 3546.0 - 0 ENSG00000204613.10 protein_coding TRIM10 2 OTTHUMG00000031295.1 +52062 chr6 HAVANA gene 30163206 30172696 2515.0 + 0 ENSG00000204610.12 protein_coding TRIM15 2 OTTHUMG00000031031.3 +52063 chr6 HAVANA gene 30186798 30188614 1203.0 - 0 ENSG00000233892.1 processed_pseudogene PAIP1P1 1 OTTHUMG00000034813.2 pseudo_consens,overlapping_locus +52064 chr6 HAVANA gene 30184455 30213427 4377.0 - 0 ENSG00000234127.8 protein_coding TRIM26 2 OTTHUMG00000031041.4 overlapping_locus +52065 chr6 HAVANA gene 30238301 30242279 753.0 + 0 ENSG00000236475.1 unprocessed_pseudogene TRIM26BP 2 OTTHUMG00000031283.2 +52066 chr6 HAVANA gene 30282349 30286054 3706.0 - 0 ENSG00000280128.1 TEC AL662795.2 2 OTTHUMG00000184109.1 overlapping_locus +52067 chr6 HAVANA gene 30259584 30293014 5505.0 + 0 ENSG00000243753.5 transcribed_unprocessed_pseudogene HLA-L 2 OTTHUMG00000031164.4 +52068 chr6 HAVANA gene 30234039 30326134 759.0 - 0 ENSG00000270604.5 lincRNA HCG17 2 OTTHUMG00000031114.2 overlapping_locus +52069 chr6 HAVANA gene 30287397 30327150 13918.0 - 0 ENSG00000231074.8 antisense HCG18 1 OTTHUMG00000031138.4 overlapping_locus +52070 chr6 HAVANA gene 30326479 30343729 4226.0 + 0 ENSG00000204599.14 protein_coding TRIM39 2 OTTHUMG00000031066.4 overlapping_locus +52071 chr6 HAVANA gene 30328907 30346854 1698.0 + 0 ENSG00000248167.7 protein_coding TRIM39-RPP21 2 OTTHUMG00000161144.2 overlapping_locus +52072 chr6 HAVANA gene 30345131 30346884 1606.0 + 0 ENSG00000241370.5 protein_coding RPP21 2 OTTHUMG00000031220.3 overlapping_locus +52073 chr6 HAVANA gene 30351416 30351550 135.0 + 0 ENSG00000224372.1 unprocessed_pseudogene HLA-N 2 OTTHUMG00000031167.2 +52074 chr6 HAVANA gene 30359278 30359911 634.0 - 0 ENSG00000224486.1 processed_pseudogene AL662795.1 2 OTTHUMG00000031057.4 +52075 chr6 HAVANA gene 30363112 30364280 1169.0 - 0 ENSG00000236405.1 processed_pseudogene UBQLN1P1 1 OTTHUMG00000031134.2 pseudo_consens +52076 chr6 HAVANA gene 30414715 30419319 1055.0 + 0 ENSG00000226577.1 unprocessed_pseudogene MICC 2 OTTHUMG00000031078.3 +52077 chr6 HAVANA gene 30466452 30467994 1267.0 + 0 ENSG00000229068.1 processed_pseudogene TMPOP1 1 OTTHUMG00000031218.2 pseudo_consens +52078 chr6 HAVANA gene 30468882 30470251 1370.0 + 0 ENSG00000224936.1 processed_pseudogene SUCLA2P1 1 OTTHUMG00000031145.2 pseudo_consens +52079 chr6 HAVANA gene 30485940 30486590 651.0 + 0 ENSG00000236603.2 processed_pseudogene RANP1 1 OTTHUMG00000031142.1 pseudo_consens +52080 chr6 HAVANA gene 30489467 30494205 2975.0 + 0 ENSG00000204592.8 protein_coding HLA-E 2 OTTHUMG00000031155.2 +52081 chr6 HAVANA gene 30516266 30519217 851.0 + 0 ENSG00000235781.1 antisense LINC02569 1 OTTHUMG00000132773.1 +52082 chr6 HAVANA gene 30541377 30557174 8646.0 - 0 ENSG00000204590.12 protein_coding GNL1 2 OTTHUMG00000031137.3 +52083 chr6 HAVANA gene 30556886 30563723 4281.0 + 0 ENSG00000204576.11 protein_coding PRR3 2 OTTHUMG00000031037.2 +52084 chr6 ENSEMBL gene 30584332 30584417 86.0 + 0 ENSG00000216101.3 miRNA MIR877 3 +52085 chr6 HAVANA gene 30571376 30597179 4523.0 + 0 ENSG00000204574.12 protein_coding ABCF1 1 OTTHUMG00000031094.7 ncRNA_host +52086 chr6 HAVANA gene 30600400 30618612 5215.0 - 0 ENSG00000204569.9 protein_coding PPP1R10 2 OTTHUMG00000031259.2 +52087 chr6 HAVANA gene 30617709 30626395 1888.0 + 0 ENSG00000204568.11 protein_coding MRPS18B 2 OTTHUMG00000031268.2 +52088 chr6 HAVANA gene 30633632 30633956 325.0 + 0 ENSG00000228415.3 processed_pseudogene PTMAP1 2 OTTHUMG00000031235.3 overlapping_locus +52089 chr6 HAVANA gene 30626842 30646823 4035.0 + 0 ENSG00000137343.17 protein_coding ATAT1 2 OTTHUMG00000031219.2 overlapping_locus +52090 chr6 HAVANA gene 30647039 30653210 2118.0 + 0 ENSG00000204564.11 protein_coding C6orf136 1 OTTHUMG00000031221.7 +52091 chr6 HAVANA gene 30653119 30673037 4008.0 - 0 ENSG00000204560.9 protein_coding DHX16 2 OTTHUMG00000031060.3 +52092 chr6 HAVANA gene 30676389 30687895 4599.0 - 0 ENSG00000146112.11 protein_coding PPP1R18 2 OTTHUMG00000031237.3 +52093 chr6 HAVANA gene 30688047 30691420 2045.0 - 0 ENSG00000137404.14 protein_coding NRM 2 OTTHUMG00000031223.3 +52094 chr6 HAVANA gene 30696806 30697535 730.0 - 0 ENSG00000230449.1 processed_pseudogene RPL7P4 1 OTTHUMG00000031255.2 pseudo_consens +52095 chr6 HAVANA gene 30703067 30713184 738.0 + 0 ENSG00000224328.1 antisense MDC1-AS1 2 OTTHUMG00000133551.1 +52096 chr6 HAVANA gene 30699807 30717889 8064.0 - 0 ENSG00000137337.14 protein_coding MDC1 2 OTTHUMG00000031075.3 +52097 chr6 HAVANA gene 30723105 30723877 773.0 - 0 ENSG00000272540.1 antisense AL662797.1 2 OTTHUMG00000185724.1 +52098 chr6 HAVANA gene 30720201 30725426 3359.0 + 0 ENSG00000196230.12 protein_coding TUBB 2 OTTHUMG00000031059.2 +52099 chr6 ENSEMBL gene 30736304 30736414 111.0 - 0 ENSG00000201988.2 misc_RNA RF00019 3 +52100 chr6 HAVANA gene 30727709 30742733 3186.0 - 0 ENSG00000137312.14 protein_coding FLOT1 2 OTTHUMG00000031151.9 ncRNA_host +52101 chr6 HAVANA gene 30742929 30743592 527.0 + 0 ENSG00000272273.1 antisense IER3-AS1 2 OTTHUMG00000185725.1 +52102 chr6 HAVANA gene 30743199 30744554 1356.0 - 0 ENSG00000137331.11 protein_coding IER3 2 OTTHUMG00000031265.2 +52103 chr6 ENSEMBL gene 30751038 30751289 252.0 + 0 ENSG00000263608.2 misc_RNA RN7SL353P 3 +52104 chr6 HAVANA gene 30766825 30792250 1371.0 + 0 ENSG00000228022.5 lincRNA HCG20 1 OTTHUMG00000031193.2 +52105 chr6 HAVANA gene 30798654 30830659 2171.0 - 0 ENSG00000214894.6 lincRNA LINC00243 1 OTTHUMG00000031239.3 +52106 chr6 HAVANA gene 30839526 30848159 799.0 - 0 ENSG00000237923.1 lincRNA LINC02570 2 OTTHUMG00000133550.1 +52107 chr6 ENSEMBL gene 30864250 30864552 303.0 + 0 ENSG00000202241.1 misc_RNA RN7SKP186 3 +52108 chr6 HAVANA gene 30866982 30875918 3994.0 - 0 ENSG00000237775.1 antisense DDR1-DT 2 OTTHUMG00000031229.3 +52109 chr6 ENSEMBL gene 30890883 30890972 90.0 + 0 ENSG00000284370.1 miRNA MIR4640 3 +52110 chr6 HAVANA gene 30876421 30900156 9122.0 + 0 ENSG00000204580.13 protein_coding DDR1 1 OTTHUMG00000031236.13 ncRNA_host +52111 chr6 HAVANA gene 30908184 30914106 2353.0 + 0 ENSG00000213780.10 protein_coding GTF2H4 2 OTTHUMG00000031043.4 overlapping_locus +52112 chr6 HAVANA gene 30908242 30926459 8448.0 + 0 ENSG00000137411.17 protein_coding VARS2 2 OTTHUMG00000031263.3 overlapping_locus +52113 chr6 ENSEMBL gene 30932618 30932709 92.0 - 0 ENSG00000252761.1 misc_RNA RF00019 3 +52114 chr6 HAVANA gene 30934523 30954221 5682.0 + 0 ENSG00000168631.12 protein_coding MUCL3 2 OTTHUMG00000031104.4 +52115 chr6 HAVANA gene 30945979 30954862 605.0 - 0 ENSG00000233529.1 antisense HCG21 2 OTTHUMG00000031182.1 overlapping_locus +52116 chr6 HAVANA gene 30931353 30955636 1204.0 - 0 ENSG00000196260.4 protein_coding SFTA2 2 OTTHUMG00000031183.3 ncRNA_host,overlapping_locus +52117 chr6 HAVANA gene 30961403 30962396 656.0 - 0 ENSG00000275906.1 processed_pseudogene NAPGP2 1 OTTHUMG00000187607.1 pseudo_consens +52118 chr6 HAVANA gene 30983718 30989903 3793.0 + 0 ENSG00000204544.5 protein_coding MUC21 1 OTTHUMG00000031216.5 +52119 chr6 HAVANA gene 31010474 31035402 6019.0 + 0 ENSG00000261272.1 protein_coding MUC22 1 OTTHUMG00000133673.2 +52120 chr6 HAVANA gene 31053450 31059890 2211.0 + 0 ENSG00000228789.7 lincRNA HCG22 1 OTTHUMG00000031179.8 +52121 chr6 ENSEMBL gene 31083010 31083109 100.0 + 0 ENSG00000222895.1 snRNA RNU6-1133P 3 +52122 chr6 HAVANA gene 31111223 31112559 1140.0 - 0 ENSG00000204542.2 protein_coding C6orf15 2 OTTHUMG00000031111.2 +52123 chr6 HAVANA gene 31115090 31120446 2552.0 - 0 ENSG00000204539.3 protein_coding CDSN 2 OTTHUMG00000031150.2 +52124 chr6 HAVANA gene 31137536 31139350 1150.0 - 0 ENSG00000204538.3 protein_coding PSORS1C2 2 OTTHUMG00000031081.3 +52125 chr6 HAVANA gene 31114750 31140092 5781.0 + 0 ENSG00000204540.10 protein_coding PSORS1C1 1 OTTHUMG00000031077.5 +52126 chr6 HAVANA gene 31140727 31140913 187.0 + 0 ENSG00000238211.1 processed_pseudogene POLR2LP1 1 OTTHUMG00000031249.2 pseudo_consens +52127 chr6 HAVANA gene 31142439 31158238 5086.0 - 0 ENSG00000204536.13 protein_coding CCHCR1 2 OTTHUMG00000031112.8 +52128 chr6 HAVANA gene 31158542 31167159 3538.0 + 0 ENSG00000137310.11 protein_coding TCF19 2 OTTHUMG00000031274.3 +52129 chr6 HAVANA gene 31173735 31177899 593.0 - 0 ENSG00000204528.3 sense_intronic PSORS1C3 2 OTTHUMG00000031054.4 overlapping_locus +52130 chr6 HAVANA gene 31164337 31180731 2896.0 - 0 ENSG00000204531.17 protein_coding POU5F1 1 OTTHUMG00000031206.9 overlapping_locus +52131 chr6 HAVANA gene 31195200 31198037 2838.0 - 0 ENSG00000272501.1 antisense AL662844.4 2 OTTHUMG00000185726.1 +52132 chr6 HAVANA gene 31200165 31201918 517.0 - 0 ENSG00000271821.1 lincRNA AL662844.3 2 OTTHUMG00000133706.1 +52133 chr6 HAVANA gene 31197760 31203968 2592.0 + 0 ENSG00000206344.7 lincRNA HCG27 1 OTTHUMG00000031248.5 +52134 chr6 HAVANA gene 31222913 31223093 181.0 + 0 ENSG00000255726.1 unprocessed_pseudogene AL662844.1 2 OTTHUMG00000168868.1 +52135 chr6 HAVANA gene 31224342 31225058 284.0 - 0 ENSG00000255899.1 unprocessed_pseudogene AL662844.2 2 OTTHUMG00000168869.1 +52136 chr6 HAVANA gene 31268749 31272130 2507.0 - 0 ENSG00000204525.16 protein_coding HLA-C 2 OTTHUMG00000031154.8 +52137 chr6 HAVANA gene 31275572 31278754 3183.0 + 0 ENSG00000214892.4 processed_pseudogene USP8P1 1 OTTHUMG00000031047.2 pseudo_consens +52138 chr6 HAVANA gene 31280317 31281519 1203.0 + 0 ENSG00000227939.1 processed_pseudogene RPL3P2 1 OTTHUMG00000031035.2 pseudo_consens +52139 chr6 HAVANA gene 31287510 31288964 1455.0 - 0 ENSG00000231402.1 processed_pseudogene WASF5P 1 OTTHUMG00000031266.3 pseudo_consens +52140 chr6 HAVANA gene 31293908 31301642 536.0 - 0 ENSG00000256166.1 lincRNA LINC02571 2 OTTHUMG00000168870.1 +52141 chr6 HAVANA gene 31307815 31308549 306.0 - 0 ENSG00000229836.1 unprocessed_pseudogene AL671883.1 2 OTTHUMG00000133741.1 +52142 chr6 ENSEMBL gene 31355224 31355316 93.0 - 0 ENSG00000277402.1 miRNA MIR6891 3 +52143 chr6 HAVANA gene 31269491 31357188 3051.0 - 0 ENSG00000234745.10 protein_coding HLA-B 2 OTTHUMG00000031153.6 ncRNA_host +52144 chr6 HAVANA gene 31356647 31357637 991.0 + 0 ENSG00000271581.1 unprocessed_pseudogene AL671883.2 2 OTTHUMG00000184567.1 +52145 chr6 HAVANA gene 31366352 31366898 547.0 - 0 ENSG00000228432.1 processed_pseudogene DHFRP2 1 OTTHUMG00000031113.2 pseudo_consens +52146 chr6 ENSEMBL gene 31370134 31370240 107.0 + 0 ENSG00000201658.1 snRNA RNU6-283P 3 +52147 chr6 HAVANA gene 31367057 31376088 1480.0 + 0 ENSG00000285647.1 lincRNA AL671883.3 2 OTTHUMG00000192641.1 ncRNA_host +52148 chr6 HAVANA gene 31377419 31378019 601.0 + 0 ENSG00000230994.1 processed_pseudogene FGFR3P1 2 OTTHUMG00000031234.2 +52149 chr6 HAVANA gene 31380411 31380839 429.0 + 0 ENSG00000223702.1 processed_pseudogene ZDHHC20P2 1 OTTHUMG00000133740.1 pseudo_consens +52150 chr6 HAVANA gene 31382074 31382288 53.0 - 0 ENSG00000225851.1 unprocessed_pseudogene HLA-S 2 OTTHUMG00000031178.2 +52151 chr6 HAVANA gene 31394289 31395495 1207.0 - 0 ENSG00000272221.1 lincRNA AL645933.2 2 OTTHUMG00000185727.1 +52152 chr6 ENSEMBL gene 31402152 31402250 99.0 - 0 ENSG00000199332.1 misc_RNA RF00019 3 +52153 chr6 HAVANA gene 31399784 31415315 2386.0 + 0 ENSG00000204520.12 protein_coding MICA 1 OTTHUMG00000031073.8 overlapping_locus +52154 chr6 HAVANA gene 31441667 31446973 2141.0 + 0 ENSG00000230174.1 lincRNA LINC01149 2 OTTHUMG00000133747.1 overlapping_locus +52155 chr6 HAVANA gene 31462728 31463336 609.0 - 0 ENSG00000233902.1 unprocessed_pseudogene AL645933.1 2 OTTHUMG00000152935.1 +52156 chr6 HAVANA gene 31400702 31477506 3138.0 + 0 ENSG00000206337.10 sense_overlapping HCP5 1 OTTHUMG00000031282.4 overlapping_locus +52157 chr6 ENSEMBL gene 31496689 31496790 102.0 - 0 ENSG00000201680.1 misc_RNA RF00019 3 +52158 chr6 HAVANA gene 31494881 31511124 2798.0 + 0 ENSG00000204516.9 protein_coding MICB 2 OTTHUMG00000031074.3 +52159 chr6 HAVANA gene 31515979 31516211 233.0 + 0 ENSG00000256851.1 unprocessed_pseudogene AL663061.1 2 OTTHUMG00000168974.1 +52160 chr6 HAVANA gene 31519480 31520291 498.0 - 0 ENSG00000219797.2 processed_pseudogene PPIAP9 1 OTTHUMG00000031290.4 pseudo_consens +52161 chr6 HAVANA gene 31528114 31528693 580.0 + 0 ENSG00000225499.1 processed_pseudogene RPL15P4 1 OTTHUMG00000031122.2 pseudo_consens +52162 chr6 HAVANA gene 31528717 31530232 955.0 + 0 ENSG00000204511.2 protein_coding MCCD1 2 OTTHUMG00000134292.1 +52163 chr6 ENSEMBL gene 31536374 31536449 76.0 - 0 ENSG00000201785.1 snoRNA SNORD117 3 +52164 chr6 ENSEMBL gene 31541101 31541178 78.0 - 0 ENSG00000265236.1 snoRNA SNORD84 3 +52165 chr6 HAVANA gene 31530219 31542448 7007.0 - 0 ENSG00000198563.13 protein_coding DDX39B 2 OTTHUMG00000031165.9 ncRNA_host,overlapping_locus +52166 chr6 HAVANA gene 31542304 31543138 527.0 + 0 ENSG00000234006.1 antisense DDX39B-AS1 2 OTTHUMG00000134293.1 +52167 chr6 HAVANA gene 31530219 31546608 2372.0 - 0 ENSG00000254870.5 protein_coding ATP6V1G2-DDX39B 2 OTTHUMG00000031200.4 ncRNA_host,overlapping_locus +52168 chr6 HAVANA gene 31544462 31548427 2147.0 - 0 ENSG00000213760.10 protein_coding ATP6V1G2 1 OTTHUMG00000166618.1 overlapping_locus +52169 chr6 HAVANA gene 31546870 31558829 1779.0 + 0 ENSG00000204498.10 protein_coding NFKBIL1 2 OTTHUMG00000031038.4 +52170 chr6 HAVANA gene 31572054 31574324 1737.0 + 0 ENSG00000226979.8 protein_coding LTA 2 OTTHUMG00000031135.2 +52171 chr6 HAVANA gene 31575567 31578336 1676.0 + 0 ENSG00000232810.3 protein_coding TNF 2 OTTHUMG00000031194.2 +52172 chr6 HAVANA gene 31580525 31582522 1535.0 - 0 ENSG00000227507.2 protein_coding LTB 2 OTTHUMG00000031136.5 +52173 chr6 HAVANA gene 31586124 31588909 2281.0 + 0 ENSG00000204482.10 protein_coding LST1 1 OTTHUMG00000031264.7 +52174 chr6 HAVANA gene 31588895 31592985 1212.0 - 0 ENSG00000204475.9 protein_coding NCR3 2 OTTHUMG00000031123.3 +52175 chr6 HAVANA gene 31611083 31611356 274.0 - 0 ENSG00000230622.1 processed_pseudogene UQCRHP1 1 OTTHUMG00000031291.3 pseudo_consens +52176 chr6 HAVANA gene 31615184 31617021 1276.0 + 0 ENSG00000204472.12 protein_coding AIF1 2 OTTHUMG00000031246.4 +52177 chr6 ENSEMBL gene 31623079 31623210 132.0 + 0 ENSG00000200816.1 snoRNA SNORA38 3 +52178 chr6 ENSEMBL gene 31633787 31633858 72.0 + 0 ENSG00000274494.1 miRNA MIR6832 3 +52179 chr6 HAVANA gene 31620720 31637771 9115.0 + 0 ENSG00000204469.12 protein_coding PRRC2A 2 OTTHUMG00000031168.2 ncRNA_host +52180 chr6 HAVANA gene 31639028 31652705 5310.0 - 0 ENSG00000204463.12 protein_coding BAG6 2 OTTHUMG00000031171.11 +52181 chr6 HAVANA gene 31652416 31658210 1660.0 + 0 ENSG00000204444.10 protein_coding APOM 2 OTTHUMG00000031250.4 +52182 chr6 HAVANA gene 31658329 31660721 673.0 + 0 ENSG00000227198.1 antisense C6orf47-AS1 2 OTTHUMG00000057503.2 +52183 chr6 HAVANA gene 31658298 31660772 2475.0 - 0 ENSG00000204439.3 protein_coding C6orf47 2 OTTHUMG00000031172.1 +52184 chr6 ENSEMBL gene 31663288 31663401 114.0 + 0 ENSG00000201207.1 misc_RNA RF00019 3 +52185 chr6 HAVANA gene 31661229 31666283 3528.0 - 0 ENSG00000204438.10 protein_coding GPANK1 2 OTTHUMG00000031174.10 +52186 chr6 HAVANA gene 31665236 31670343 2933.0 + 0 ENSG00000204435.13 protein_coding CSNK2B 1 OTTHUMG00000177888.1 overlapping_locus +52187 chr6 HAVANA gene 31666102 31673546 2524.0 + 0 ENSG00000263020.6 protein_coding AL662899.2 2 OTTHUMG00000031056.16 overlapping_locus +52188 chr6 HAVANA gene 31670167 31673776 3031.0 + 0 ENSG00000240053.8 protein_coding LY6G5B 2 OTTHUMG00000031227.9 overlapping_locus +52189 chr6 HAVANA gene 31676684 31684040 2621.0 - 0 ENSG00000204428.12 protein_coding LY6G5C 1 OTTHUMG00000031228.9 +52190 chr6 ENSEMBL gene 31701029 31701091 63.0 - 0 ENSG00000266776.1 miRNA MIR4646 3 +52191 chr6 HAVANA gene 31686949 31703444 4153.0 - 0 ENSG00000204427.11 protein_coding ABHD16A 1 OTTHUMG00000031177.7 ncRNA_host,overlapping_locus +52192 chr6 HAVANA gene 31706885 31710595 920.0 + 0 ENSG00000204424.9 protein_coding LY6G6F 2 OTTHUMG00000031252.5 overlapping_locus +52193 chr6 HAVANA gene 31711771 31714065 1104.0 - 0 ENSG00000255552.7 protein_coding LY6G6E 2 OTTHUMG00000166419.1 overlapping_locus +52194 chr6 HAVANA gene 31686962 31714072 2332.0 - 0 ENSG00000204422.7 protein_coding AL662899.1 2 OTTHUMG00000031253.7 ncRNA_host,overlapping_locus +52195 chr6 HAVANA gene 31715356 31717804 614.0 + 0 ENSG00000244355.7 protein_coding LY6G6D 2 OTTHUMG00000137370.5 overlapping_locus +52196 chr6 HAVANA gene 31706904 31717918 1266.0 + 0 ENSG00000250641.1 protein_coding LY6G6F-LY6G6D 1 OTTHUMG00000162247.1 overlapping_locus +52197 chr6 HAVANA gene 31718648 31721845 1103.0 - 0 ENSG00000204421.2 protein_coding LY6G6C 2 OTTHUMG00000031251.3 +52198 chr6 HAVANA gene 31718594 31726714 2937.0 + 0 ENSG00000204420.9 protein_coding MPIG6B 2 OTTHUMG00000031130.8 +52199 chr6 HAVANA gene 31727038 31730617 2538.0 - 0 ENSG00000213722.8 protein_coding DDAH2 2 OTTHUMG00000031212.6 overlapping_locus +52200 chr6 HAVANA gene 31730581 31739763 1942.0 - 0 ENSG00000213719.8 protein_coding CLIC1 2 OTTHUMG00000031103.3 overlapping_locus +52201 chr6 ENSEMBL gene 31756951 31757053 103.0 - 0 ENSG00000252743.1 snRNA RNU6-850P 3 +52202 chr6 HAVANA gene 31739948 31762834 6234.0 + 0 ENSG00000204410.14 protein_coding MSH5 2 OTTHUMG00000167551.2 overlapping_locus +52203 chr6 HAVANA gene 31762799 31764851 1557.0 + 0 ENSG00000228727.8 protein_coding SAPCD1 2 OTTHUMG00000031131.5 overlapping_locus +52204 chr6 HAVANA gene 31740020 31764851 4140.0 + 0 ENSG00000255152.8 protein_coding MSH5-SAPCD1 2 OTTHUMG00000031139.11 overlapping_locus +52205 chr6 HAVANA gene 31764310 31765588 461.0 - 0 ENSG00000235663.1 antisense SAPCD1-AS1 2 OTTHUMG00000137389.1 +52206 chr6 HAVANA gene 31765590 31777294 3638.0 - 0 ENSG00000204396.10 protein_coding VWA7 2 OTTHUMG00000031132.2 +52207 chr6 ENSEMBL gene 31778817 31778905 89.0 - 0 ENSG00000201555.1 misc_RNA RF00019 3 +52208 chr6 HAVANA gene 31777518 31795953 6081.0 - 0 ENSG00000204394.12 protein_coding VARS 1 OTTHUMG00000031286.4 ncRNA_host +52209 chr6 HAVANA gene 31797396 31806984 1077.0 - 0 ENSG00000204392.10 protein_coding LSM2 2 OTTHUMG00000031121.2 +52210 chr6 HAVANA gene 31809619 31815065 2544.0 - 0 ENSG00000204390.9 protein_coding HSPA1L 2 OTTHUMG00000031208.2 retrogene +52211 chr6 HAVANA gene 31815464 31817946 2483.0 + 0 ENSG00000204389.9 protein_coding HSPA1A 2 OTTHUMG00000031201.3 retrogene +52212 chr6 HAVANA gene 31827735 31830255 2521.0 + 0 ENSG00000204388.6 protein_coding HSPA1B 2 OTTHUMG00000031202.2 retrogene +52213 chr6 ENSEMBL gene 31835263 31835326 64.0 + 0 ENSG00000201823.1 snoRNA SNORD48 3 +52214 chr6 ENSEMBL gene 31837076 31837142 67.0 + 0 ENSG00000201754.1 snoRNA SNORD52 3 +52215 chr6 HAVANA gene 31828834 31839719 1338.0 + 0 ENSG00000285565.1 processed_transcript AL671762.1 2 OTTHUMG00000193357.1 ncRNA_host +52216 chr6 HAVANA gene 31834608 31839766 1801.0 + 0 ENSG00000204387.13 protein_coding C6orf48 2 OTTHUMG00000031175.4 ncRNA_host +52217 chr6 HAVANA gene 31857659 31862906 4822.0 - 0 ENSG00000204386.10 protein_coding NEU1 2 OTTHUMG00000031284.4 +52218 chr6 HAVANA gene 31863192 31879046 3369.0 - 0 ENSG00000204385.11 protein_coding SLC44A4 1 OTTHUMG00000031133.13 +52219 chr6 HAVANA gene 31877808 31884204 2571.0 + 0 ENSG00000237080.3 antisense EHMT2-AS1 2 OTTHUMG00000057535.3 +52220 chr6 HAVANA gene 31879759 31897687 7289.0 - 0 ENSG00000204371.11 protein_coding EHMT2 2 OTTHUMG00000031180.6 +52221 chr6 HAVANA gene 31899607 31901992 1875.0 - 0 ENSG00000204366.3 protein_coding ZBTB12 2 OTTHUMG00000031169.2 +52222 chr6 HAVANA gene 31934474 31941724 762.0 - 0 ENSG00000281756.1 antisense C2-AS1 2 OTTHUMG00000189556.1 +52223 chr6 HAVANA gene 31897785 31945672 5536.0 + 0 ENSG00000166278.14 protein_coding C2 1 OTTHUMG00000031190.14 overlapping_locus +52224 chr6 HAVANA gene 31927698 31952048 4069.0 + 0 ENSG00000244255.5 protein_coding AL645922.1 1 OTTHUMG00000159600.2 overlapping_locus +52225 chr6 HAVANA gene 31945650 31952084 4997.0 + 0 ENSG00000243649.8 protein_coding CFB 1 OTTHUMG00000031198.4 overlapping_locus +52226 chr6 ENSEMBL gene 31956839 31956940 102.0 - 0 ENSG00000284446.1 miRNA MIR1236 3 +52227 chr6 HAVANA gene 31952087 31959110 2719.0 - 0 ENSG00000204356.13 protein_coding NELFE 1 OTTHUMG00000031046.5 ncRNA_host +52228 chr6 HAVANA gene 31959080 31969755 5565.0 + 0 ENSG00000204351.11 protein_coding SKIV2L 2 OTTHUMG00000031146.4 +52229 chr6 HAVANA gene 31969810 31972292 2483.0 - 0 ENSG00000204348.9 protein_coding DXO 2 OTTHUMG00000031272.3 +52230 chr6 HAVANA gene 31971091 31982821 3954.0 + 0 ENSG00000204344.14 protein_coding STK19 2 OTTHUMG00000166424.2 overlapping_locus +52231 chr6 HAVANA gene 31982024 32002681 7191.0 + 0 ENSG00000244731.7 protein_coding C4A 2 OTTHUMG00000031186.5 overlapping_locus +52232 chr6 HAVANA gene 31999976 32003521 2095.0 - 0 ENSG00000233627.2 antisense C4A-AS1 2 OTTHUMG00000137496.2 +52233 chr6 HAVANA gene 32005636 32008451 1971.0 + 0 ENSG00000204338.8 transcribed_unprocessed_pseudogene CYP21A1P 2 OTTHUMG00000031026.3 +52234 chr6 HAVANA gene 32008614 32012472 2038.0 - 0 ENSG00000248290.1 unprocessed_pseudogene TNXA 2 OTTHUMG00000031024.2 +52235 chr6 HAVANA gene 32013270 32013787 211.0 + 0 ENSG00000250535.1 unprocessed_pseudogene STK19B 2 OTTHUMG00000031025.2 +52236 chr6 HAVANA gene 32014795 32035418 7174.0 + 0 ENSG00000224389.9 protein_coding C4B 2 OTTHUMG00000031187.6 +52237 chr6 HAVANA gene 32032713 32036258 2095.0 - 0 ENSG00000229776.1 antisense C4B-AS1 2 OTTHUMG00000137467.3 +52238 chr6 HAVANA gene 32038265 32041670 2909.0 + 0 ENSG00000231852.7 protein_coding CYP21A2 2 OTTHUMG00000031069.5 +52239 chr6 ENSEMBL gene 32078508 32078628 121.0 - 0 ENSG00000252512.1 rRNA_pseudogene RNA5SP206 3 +52240 chr6 HAVANA gene 32041153 32115334 15909.0 - 0 ENSG00000168477.19 protein_coding TNXB 1 OTTHUMG00000031088.12 overlapping_locus +52241 chr6 HAVANA gene 32098176 32117610 320.0 - 0 ENSG00000284829.1 processed_transcript AL662884.2 2 OTTHUMG00000031296.4 overlapping_locus +52242 chr6 HAVANA gene 32115264 32128253 3629.0 - 0 ENSG00000213676.12 protein_coding ATF6B 2 OTTHUMG00000192589.3 overlapping_locus +52243 chr6 HAVANA gene 32128707 32130291 1345.0 - 0 ENSG00000204315.3 protein_coding FKBPL 2 OTTHUMG00000031129.2 +52244 chr6 HAVANA gene 32148359 32153083 3139.0 - 0 ENSG00000204314.11 protein_coding PRRT1 1 OTTHUMG00000031144.3 overlapping_locus +52245 chr6 HAVANA gene 32152802 32154365 1060.0 - 0 ENSG00000284954.1 bidirectional_promoter_lncRNA AL662884.3 2 OTTHUMG00000192427.1 overlapping_locus +52246 chr6 HAVANA gene 32150495 32154373 936.0 - 0 ENSG00000285085.1 protein_coding AL662884.4 2 OTTHUMG00000192426.1 overlapping_locus +52247 chr6 HAVANA gene 32153441 32163680 2940.0 + 0 ENSG00000221988.12 protein_coding PPT2 2 OTTHUMG00000031257.18 overlapping_locus +52248 chr6 HAVANA gene 32164583 32168281 2621.0 + 0 ENSG00000241404.6 protein_coding EGFL8 2 OTTHUMG00000031222.14 overlapping_locus +52249 chr6 ENSEMBL gene 32170030 32170116 87.0 - 0 ENSG00000284469.1 miRNA MIR6721 3 +52250 chr6 HAVANA gene 32153845 32171978 5512.0 + 0 ENSG00000258388.7 protein_coding PPT2-EGFL8 2 OTTHUMG00000171245.3 overlapping_locus +52251 chr6 HAVANA gene 32168212 32178096 3631.0 - 0 ENSG00000204310.12 protein_coding AGPAT1 2 OTTHUMG00000031210.2 ncRNA_host +52252 chr6 ENSEMBL gene 32179816 32179876 61.0 + 0 ENSG00000277264.1 miRNA MIR6833 3 +52253 chr6 HAVANA gene 32178354 32180793 1178.0 + 0 ENSG00000204308.7 protein_coding RNF5 2 OTTHUMG00000031093.2 ncRNA_host +52254 chr6 HAVANA gene 32180968 32184324 2077.0 - 0 ENSG00000204305.13 protein_coding AGER 2 OTTHUMG00000031120.3 +52255 chr6 HAVANA gene 32184733 32185882 662.0 - 0 ENSG00000273333.2 3prime_overlapping_ncRNA AL662884.1 2 OTTHUMG00000185990.2 overlapping_locus +52256 chr6 HAVANA gene 32184741 32190186 4344.0 - 0 ENSG00000204304.11 protein_coding PBX2 2 OTTHUMG00000031116.5 overlapping_locus +52257 chr6 HAVANA gene 32190766 32195523 1854.0 - 0 ENSG00000213654.9 protein_coding GPSM3 2 OTTHUMG00000031244.3 overlapping_locus +52258 chr6 HAVANA gene 32194843 32224067 9748.0 - 0 ENSG00000204301.6 protein_coding NOTCH4 2 OTTHUMG00000031044.2 overlapping_locus +52259 chr6 HAVANA gene 32325219 32326178 960.0 + 0 ENSG00000237285.1 processed_pseudogene HNRNPA1P2 1 OTTHUMG00000031294.3 pseudo_consens +52260 chr6 ENSEMBL gene 32352877 32352983 107.0 + 0 ENSG00000223335.1 snRNA RNU6-603P 3 +52261 chr6 HAVANA gene 32288526 32371912 2474.0 - 0 ENSG00000204296.11 protein_coding C6orf10 1 OTTHUMG00000031107.5 +52262 chr6 HAVANA gene 32393963 32407128 1468.0 - 0 ENSG00000204290.10 protein_coding BTNL2 2 OTTHUMG00000031102.5 +52263 chr6 HAVANA gene 32254640 32407763 8816.0 + 0 ENSG00000225914.2 antisense HCG23 1 OTTHUMG00000031217.3 ncRNA_host +52264 chr6 HAVANA gene 32439842 32445046 1280.0 + 0 ENSG00000204287.13 protein_coding HLA-DRA 1 OTTHUMG00000031269.3 +52265 chr6 HAVANA gene 32459821 32473500 343.0 - 0 ENSG00000196301.3 unprocessed_pseudogene HLA-DRB9 2 OTTHUMG00000031197.4 +52266 chr6 HAVANA gene 32517343 32530287 1260.0 - 0 ENSG00000198502.5 protein_coding HLA-DRB5 2 OTTHUMG00000031027.3 +52267 chr6 ENSEMBL gene 32549940 32550090 151.0 - 0 ENSG00000251916.1 snRNA RNU1-61P 3 +52268 chr6 HAVANA gene 32552713 32560022 1326.0 - 0 ENSG00000229391.7 transcribed_unprocessed_pseudogene HLA-DRB6 2 OTTHUMG00000031028.4 +52269 chr6 HAVANA gene 32578769 32589848 1229.0 - 0 ENSG00000196126.11 protein_coding HLA-DRB1 2 OTTHUMG00000031196.4 +52270 chr6 HAVANA gene 32628179 32647062 6927.0 + 0 ENSG00000196735.11 protein_coding HLA-DQA1 1 OTTHUMG00000031106.7 +52271 chr6 HAVANA gene 32659880 32660729 552.0 + 0 ENSG00000223534.1 antisense HLA-DQB1-AS1 2 OTTHUMG00000140101.2 +52272 chr6 HAVANA gene 32659467 32668383 4904.0 - 0 ENSG00000179344.16 protein_coding HLA-DQB1 1 OTTHUMG00000031124.4 overlapping_locus +52273 chr6 HAVANA gene 32706124 32706955 832.0 - 0 ENSG00000235040.1 unprocessed_pseudogene MTCO3P1 2 OTTHUMG00000031271.3 +52274 chr6 HAVANA gene 32718005 32719170 1017.0 + 0 ENSG00000232080.5 processed_transcript AL662789.1 2 OTTHUMG00000140119.4 +52275 chr6 HAVANA gene 32730758 32731695 356.0 - 0 ENSG00000226030.1 unprocessed_pseudogene HLA-DQB3 2 OTTHUMG00000031127.2 +52276 chr6 HAVANA gene 32741342 32747215 1524.0 + 0 ENSG00000237541.3 protein_coding HLA-DQA2 2 OTTHUMG00000031108.2 +52277 chr6 ENSEMBL gene 32749912 32749979 68.0 - 0 ENSG00000263649.1 miRNA MIR3135B 3 +52278 chr6 HAVANA gene 32756098 32763534 2028.0 - 0 ENSG00000232629.8 protein_coding HLA-DQB2 2 OTTHUMG00000031125.3 +52279 chr6 HAVANA gene 32812763 32820466 2014.0 - 0 ENSG00000241106.7 protein_coding HLA-DOB 2 OTTHUMG00000031213.6 overlapping_locus +52280 chr6 HAVANA gene 32821833 32838780 6390.0 - 0 ENSG00000204267.13 protein_coding TAP2 2 OTTHUMG00000031068.2 overlapping_locus +52281 chr6 HAVANA gene 32813767 32838822 2705.0 - 0 ENSG00000250264.1 protein_coding AL669918.1 1 OTTHUMG00000160697.2 overlapping_locus +52282 chr6 HAVANA gene 32840717 32844703 2006.0 - 0 ENSG00000204264.9 protein_coding PSMB8 2 OTTHUMG00000031285.4 +52283 chr6 HAVANA gene 32844086 32846495 1951.0 + 0 ENSG00000204261.8 lincRNA PSMB8-AS1 2 OTTHUMG00000140123.1 overlapping_locus +52284 chr6 HAVANA gene 32845209 32853978 4578.0 - 0 ENSG00000168394.11 protein_coding TAP1 2 OTTHUMG00000031067.4 +52285 chr6 HAVANA gene 32844136 32859585 3072.0 + 0 ENSG00000240065.7 protein_coding PSMB9 2 OTTHUMG00000031287.6 overlapping_locus +52286 chr6 HAVANA gene 32879171 32879848 678.0 - 0 ENSG00000234515.1 transcribed_processed_pseudogene PPP1R2P1 1 OTTHUMG00000031273.2 pseudo_consens +52287 chr6 HAVANA gene 32896416 32896490 75.0 + 0 ENSG00000235301.1 unprocessed_pseudogene HLA-Z 2 OTTHUMG00000031189.2 +52288 chr6 HAVANA gene 32934629 32941070 4655.0 - 0 ENSG00000242574.8 protein_coding HLA-DMB 2 OTTHUMG00000031176.3 overlapping_locus +52289 chr6 HAVANA gene 32937364 32953122 612.0 - 0 ENSG00000248993.1 protein_coding AL645941.2 2 OTTHUMG00000162160.2 overlapping_locus +52290 chr6 HAVANA gene 32948613 32969094 2534.0 - 0 ENSG00000204257.14 protein_coding HLA-DMA 2 OTTHUMG00000031173.8 overlapping_locus +52291 chr6 HAVANA gene 32970232 32970886 338.0 + 0 ENSG00000223837.2 sense_intronic AL645941.1 2 OTTHUMG00000140321.2 overlapping_locus +52292 chr6 HAVANA gene 32972065 32972853 577.0 - 0 ENSG00000263756.1 antisense AL645941.3 2 OTTHUMG00000178528.1 +52293 chr6 HAVANA gene 32968660 32981505 7337.0 + 0 ENSG00000204256.12 protein_coding BRD2 1 OTTHUMG00000031241.7 overlapping_locus +52294 chr6 HAVANA gene 33004178 33009612 4012.0 - 0 ENSG00000204252.13 protein_coding HLA-DOA 2 OTTHUMG00000031211.3 +52295 chr6 HAVANA gene 33079451 33079860 410.0 + 0 ENSG00000224796.1 processed_pseudogene RPL32P1 1 OTTHUMG00000031191.2 pseudo_consens,overlapping_locus +52296 chr6 HAVANA gene 33064569 33080775 5748.0 - 0 ENSG00000231389.7 protein_coding HLA-DPA1 2 OTTHUMG00000031058.7 +52297 chr6 HAVANA gene 33075926 33087201 2791.0 + 0 ENSG00000223865.10 protein_coding HLA-DPB1 2 OTTHUMG00000031076.6 overlapping_locus +52298 chr6 HAVANA gene 33091753 33097295 733.0 - 0 ENSG00000231461.1 unprocessed_pseudogene HLA-DPA2 2 OTTHUMG00000031061.2 +52299 chr6 HAVANA gene 33103794 33107330 676.0 - 0 ENSG00000228688.1 unprocessed_pseudogene COL11A2P1 2 OTTHUMG00000031065.2 +52300 chr6 HAVANA gene 33112451 33129084 1600.0 + 0 ENSG00000224557.7 transcribed_unprocessed_pseudogene HLA-DPB2 2 OTTHUMG00000031080.2 +52301 chr6 HAVANA gene 33131216 33143325 229.0 - 0 ENSG00000237398.1 unprocessed_pseudogene HLA-DPA3 2 OTTHUMG00000031063.2 +52302 chr6 HAVANA gene 33144783 33147767 717.0 + 0 ENSG00000230313.1 antisense HCG24 1 OTTHUMG00000031166.2 +52303 chr6 HAVANA gene 33162681 33192499 6740.0 - 0 ENSG00000204248.10 protein_coding COL11A2 2 OTTHUMG00000031036.10 +52304 chr6 ENSEMBL gene 33199601 33199696 96.0 + 0 ENSG00000202441.2 misc_RNA RNY4P10 3 +52305 chr6 HAVANA gene 33193588 33200688 3920.0 - 0 ENSG00000204231.10 protein_coding RXRB 2 OTTHUMG00000031298.4 +52306 chr6 HAVANA gene 33200445 33204439 2845.0 + 0 ENSG00000112473.17 protein_coding SLC39A7 2 OTTHUMG00000031238.5 +52307 chr6 HAVANA gene 33204642 33206831 1171.0 + 0 ENSG00000204228.3 protein_coding HSD17B8 2 OTTHUMG00000031117.2 +52308 chr6 ENSEMBL gene 33207835 33207944 110.0 + 0 ENSG00000199036.1 miRNA MIR219A1 3 +52309 chr6 HAVANA gene 33208495 33212722 1818.0 + 0 ENSG00000204227.4 protein_coding RING1 2 OTTHUMG00000031278.2 +52310 chr6 HAVANA gene 33215705 33216328 624.0 + 0 ENSG00000225463.1 processed_pseudogene ZNF70P1 2 OTTHUMG00000031147.2 +52311 chr6 HAVANA gene 33237799 33239690 984.0 + 0 ENSG00000223457.1 processed_pseudogene HTATSF1P1 1 OTTHUMG00000031101.2 pseudo_consens +52312 chr6 HAVANA gene 33246075 33246856 594.0 - 0 ENSG00000272217.1 lincRNA AL645940.1 2 OTTHUMG00000185732.1 +52313 chr6 HAVANA gene 33249534 33254989 1374.0 + 0 ENSG00000232940.5 antisense HCG25 1 OTTHUMG00000031170.3 +52314 chr6 HAVANA gene 33250272 33272047 4503.0 - 0 ENSG00000223501.8 protein_coding VPS52 2 OTTHUMG00000031276.8 +52315 chr6 HAVANA gene 33272010 33276510 1898.0 + 0 ENSG00000231500.6 protein_coding RPS18 2 OTTHUMG00000031053.3 +52316 chr6 HAVANA gene 33277132 33284832 2356.0 + 0 ENSG00000235863.3 protein_coding B3GALT4 2 OTTHUMG00000031100.3 +52317 chr6 ENSEMBL gene 33287227 33287289 63.0 - 0 ENSG00000284517.1 miRNA MIR6873 3 +52318 chr6 HAVANA gene 33279108 33289527 3115.0 - 0 ENSG00000227057.9 protein_coding WDR46 2 OTTHUMG00000031192.4 ncRNA_host +52319 chr6 ENSEMBL gene 33290245 33290325 81.0 + 0 ENSG00000284064.1 miRNA MIR6834 3 +52320 chr6 HAVANA gene 33289302 33298401 2953.0 + 0 ENSG00000204220.11 protein_coding PFDN6 2 OTTHUMG00000031247.4 ncRNA_host +52321 chr6 HAVANA gene 33291654 33299324 4541.0 - 0 ENSG00000237441.9 protein_coding RGL2 2 OTTHUMG00000031072.4 +52322 chr6 HAVANA gene 33299694 33314387 5056.0 - 0 ENSG00000231925.11 protein_coding TAPBP 1 OTTHUMG00000031090.5 +52323 chr6 HAVANA gene 33314406 33317942 2728.0 - 0 ENSG00000236104.2 protein_coding ZBTB22 2 OTTHUMG00000031110.4 +52324 chr6 HAVANA gene 33318558 33323016 3084.0 - 0 ENSG00000204209.12 protein_coding DAXX 2 OTTHUMG00000192544.1 overlapping_locus +52325 chr6 HAVANA gene 33321386 33329286 1041.0 - 0 ENSG00000285064.1 protein_coding AL662820.1 2 OTTHUMG00000031203.6 overlapping_locus +52326 chr6 HAVANA gene 33338978 33339495 518.0 + 0 ENSG00000229596.3 processed_pseudogene MYL8P 1 OTTHUMG00000031181.2 pseudo_consens +52327 chr6 HAVANA gene 33365548 33366243 696.0 - 0 ENSG00000228285.2 processed_pseudogene LYPLA2P1 1 OTTHUMG00000031128.2 pseudo_consens +52328 chr6 HAVANA gene 33389374 33389475 102.0 - 0 ENSG00000225644.1 processed_pseudogene RPL35AP4 1 OTTHUMG00000140156.1 pseudo_consens +52329 chr6 HAVANA gene 33400059 33400556 498.0 - 0 ENSG00000204194.1 processed_pseudogene RPL12P1 2 OTTHUMG00000031256.3 +52330 chr6 HAVANA gene 33391536 33409924 3345.0 + 0 ENSG00000237649.7 protein_coding KIFC1 2 OTTHUMG00000031209.4 +52331 chr6 HAVANA gene 33410399 33416453 3596.0 + 0 ENSG00000112511.17 protein_coding PHF1 2 OTTHUMG00000031105.11 +52332 chr6 HAVANA gene 33416442 33418317 1876.0 - 0 ENSG00000112514.15 protein_coding CUTA 2 OTTHUMG00000031254.7 +52333 chr6 ENSEMBL gene 33438331 33438437 107.0 + 0 ENSG00000284256.1 miRNA MIR5004 3 +52334 chr6 HAVANA gene 33437363 33454453 779.0 - 0 ENSG00000274259.2 antisense SYNGAP1-AS1 2 OTTHUMG00000188147.2 +52335 chr6 HAVANA gene 33419661 33457541 12124.0 + 0 ENSG00000197283.16 protein_coding SYNGAP1 1 OTTHUMG00000031096.18 ncRNA_host,overlapping_locus +52336 chr6 HAVANA gene 33453970 33457548 3014.0 + 0 ENSG00000213588.5 protein_coding ZBTB9 2 OTTHUMG00000140180.4 overlapping_locus +52337 chr6 ENSEMBL gene 33540694 33541000 307.0 + 0 ENSG00000242014.3 misc_RNA RN7SL26P 3 +52338 chr6 ENSEMBL gene 33562880 33563130 251.0 - 0 ENSG00000276746.1 misc_RNA RF00017 3 +52339 chr6 HAVANA gene 33572547 33580293 2212.0 - 0 ENSG00000030110.12 protein_coding BAK1 2 OTTHUMG00000014530.3 +52340 chr6 HAVANA gene 33540046 33589026 1737.0 + 0 ENSG00000204188.7 transcribed_unitary_pseudogene GGNBP1 2 OTTHUMG00000187092.3 +52341 chr6 HAVANA gene 33586106 33593338 2107.0 - 0 ENSG00000197251.3 lincRNA LINC00336 2 OTTHUMG00000159733.1 +52342 chr6 HAVANA gene 33620365 33696574 9870.0 + 0 ENSG00000096433.10 protein_coding ITPR3 2 OTTHUMG00000014532.2 +52343 chr6 ENSEMBL gene 33698128 33698234 107.0 + 0 ENSG00000266509.1 miRNA MIR3934 3 +52344 chr6 HAVANA gene 33694293 33711727 4689.0 - 0 ENSG00000137288.9 protein_coding UQCC2 2 OTTHUMG00000014534.2 +52345 chr6 HAVANA gene 33721670 33746905 2785.0 - 0 ENSG00000161896.11 protein_coding IP6K3 2 OTTHUMG00000014531.4 +52346 chr6 HAVANA gene 33771202 33789136 6788.0 - 0 ENSG00000161904.11 protein_coding LEMD2 1 OTTHUMG00000014535.7 +52347 chr6 HAVANA gene 33794673 33804011 566.0 - 0 ENSG00000096395.10 protein_coding MLN 1 OTTHUMG00000014536.4 +52348 chr6 HAVANA gene 33883170 33883411 242.0 + 0 ENSG00000271362.1 processed_pseudogene AL138889.2 1 OTTHUMG00000184544.1 pseudo_consens +52349 chr6 HAVANA gene 33867506 33896914 3796.0 - 0 ENSG00000249346.6 lincRNA LINC01016 2 OTTHUMG00000166297.4 +52350 chr6 ENSEMBL gene 33899135 33899200 66.0 + 0 ENSG00000276824.1 miRNA MIR7159 3 +52351 chr6 HAVANA gene 33893323 33927631 10366.0 + 0 ENSG00000233183.2 lincRNA AL138889.1 2 OTTHUMG00000014537.3 ncRNA_host +52352 chr6 ENSEMBL gene 33999972 34000051 80.0 - 0 ENSG00000221697.1 miRNA MIR1275 3 +52353 chr6 HAVANA gene 34018645 34155622 16300.0 - 0 ENSG00000124493.13 protein_coding GRM4 2 OTTHUMG00000014538.3 +52354 chr6 HAVANA gene 34189780 34191079 1300.0 + 0 ENSG00000271231.1 processed_pseudogene KRT18P9 1 OTTHUMG00000184543.1 pseudo_consens +52355 chr6 HAVANA gene 34219439 34220066 311.0 + 0 ENSG00000214810.4 processed_pseudogene CYCSP55 1 OTTHUMG00000014540.2 pseudo_consens +52356 chr6 ENSEMBL gene 34240673 34240736 64.0 + 0 ENSG00000276404.1 miRNA MIR6835 3 +52357 chr6 HAVANA gene 34236873 34246231 2327.0 + 0 ENSG00000137309.19 protein_coding HMGA1 2 OTTHUMG00000014539.3 ncRNA_host +52358 chr6 HAVANA gene 34246380 34249470 2229.0 - 0 ENSG00000186577.13 protein_coding SMIM29 2 OTTHUMG00000159754.4 +52359 chr6 HAVANA gene 34263311 34263673 363.0 - 0 ENSG00000220583.1 processed_pseudogene RPL35P2 1 OTTHUMG00000014541.1 pseudo_consens +52360 chr6 HAVANA gene 34248568 34286768 8287.0 + 0 ENSG00000225339.3 processed_transcript AL354740.1 2 OTTHUMG00000014542.4 +52361 chr6 HAVANA gene 34279679 34392674 9905.0 - 0 ENSG00000272325.1 protein_coding NUDT3 2 OTTHUMG00000014545.2 overlapping_locus +52362 chr6 HAVANA gene 34284887 34426071 5018.0 - 0 ENSG00000270800.3 protein_coding RPS10-NUDT3 2 OTTHUMG00000185089.4 overlapping_locus +52363 chr6 HAVANA gene 34417454 34426125 1642.0 - 0 ENSG00000124614.15 protein_coding RPS10 2 OTTHUMG00000014546.3 overlapping_locus +52364 chr6 HAVANA gene 34466061 34535231 4807.0 + 0 ENSG00000124507.10 protein_coding PACSIN1 2 OTTHUMG00000014547.4 +52365 chr6 HAVANA gene 34537802 34556333 1914.0 - 0 ENSG00000124664.10 protein_coding SPDEF 2 OTTHUMG00000014548.1 +52366 chr6 HAVANA gene 34576258 34576656 399.0 - 0 ENSG00000196114.3 processed_pseudogene AL031577.1 1 OTTHUMG00000014551.1 pseudo_consens +52367 chr6 HAVANA gene 34616538 34617258 721.0 + 0 ENSG00000216636.1 processed_pseudogene RPL7P25 1 OTTHUMG00000014550.1 pseudo_consens +52368 chr6 ENSEMBL gene 34685355 34685642 288.0 - 0 ENSG00000265123.2 misc_RNA RN7SL200P 3 +52369 chr6 HAVANA gene 34686602 34687106 280.0 + 0 ENSG00000220643.1 processed_pseudogene AL031577.2 1 OTTHUMG00000014549.2 pseudo_consens +52370 chr6 HAVANA gene 34587288 34696859 4551.0 - 0 ENSG00000196821.9 protein_coding C6orf106 2 OTTHUMG00000014553.1 ncRNA_host +52371 chr6 HAVANA gene 34696317 34697470 771.0 + 0 ENSG00000272288.5 antisense AL451165.2 2 OTTHUMG00000185742.1 +52372 chr6 HAVANA gene 34715613 34715940 328.0 + 0 ENSG00000186328.4 processed_pseudogene AL451165.1 1 OTTHUMG00000014552.1 pseudo_consens +52373 chr6 HAVANA gene 34744176 34744673 498.0 + 0 ENSG00000217130.1 processed_pseudogene AL139100.1 1 OTTHUMG00000014554.1 pseudo_consens +52374 chr6 HAVANA gene 34757406 34773794 1277.0 + 0 ENSG00000124562.9 protein_coding SNRPC 2 OTTHUMG00000014555.2 +52375 chr6 ENSEMBL gene 34821445 34821542 98.0 + 0 ENSG00000206717.1 misc_RNA RF00019 3 +52376 chr6 ENSEMBL gene 34873831 34873927 97.0 + 0 ENSG00000252106.2 misc_RNA RNY3P15 3 +52377 chr6 HAVANA gene 34792015 34883138 9908.0 + 0 ENSG00000065060.16 protein_coding UHRF1BP1 2 OTTHUMG00000014557.1 ncRNA_host +52378 chr6 HAVANA gene 34877462 34888089 2007.0 - 0 ENSG00000064995.17 protein_coding TAF11 2 OTTHUMG00000014556.3 +52379 chr6 HAVANA gene 35023522 35023831 310.0 + 0 ENSG00000187762.5 processed_pseudogene HSPE1P11 1 OTTHUMG00000014558.2 pseudo_consens,overlapping_locus +52380 chr6 HAVANA gene 35070871 35071049 179.0 - 0 ENSG00000273870.1 processed_pseudogene AL138721.1 1 OTTHUMG00000187612.1 pseudo_consens +52381 chr6 HAVANA gene 34889265 35091413 6777.0 + 0 ENSG00000064999.14 protein_coding ANKS1A 2 OTTHUMG00000014559.3 overlapping_locus +52382 chr6 HAVANA gene 35118071 35148610 3306.0 - 0 ENSG00000124678.17 protein_coding TCP11 1 OTTHUMG00000014560.6 +52383 chr6 HAVANA gene 35220370 35224630 4261.0 - 0 ENSG00000272374.1 lincRNA Z97832.2 2 OTTHUMG00000185743.1 +52384 chr6 HAVANA gene 35214419 35253079 7356.0 + 0 ENSG00000146197.8 protein_coding SCUBE3 2 OTTHUMG00000014562.1 +52385 chr6 HAVANA gene 35279177 35279819 328.0 - 0 ENSG00000217004.1 unprocessed_pseudogene Z97832.1 1 OTTHUMG00000014561.1 pseudo_consens +52386 chr6 HAVANA gene 35258909 35295985 6789.0 + 0 ENSG00000065029.14 protein_coding ZNF76 2 OTTHUMG00000014564.4 +52387 chr6 HAVANA gene 35297852 35321771 2545.0 + 0 ENSG00000023892.10 protein_coding DEF6 2 OTTHUMG00000014563.2 +52388 chr6 HAVANA gene 35342558 35428191 4457.0 + 0 ENSG00000112033.13 protein_coding PPARD 2 OTTHUMG00000014567.1 +52389 chr6 HAVANA gene 35443044 35449847 731.0 + 0 ENSG00000227154.4 unprocessed_pseudogene AL022721.1 2 OTTHUMG00000014568.2 +52390 chr6 HAVANA gene 35452356 35467103 2692.0 + 0 ENSG00000112039.4 protein_coding FANCE 2 OTTHUMG00000014565.3 +52391 chr6 ENSEMBL gene 35470508 35470579 72.0 + 0 ENSG00000276712.1 miRNA MIR7111 3 +52392 chr6 HAVANA gene 35468408 35470785 1501.0 + 0 ENSG00000198755.10 protein_coding RPL10A 2 OTTHUMG00000014566.1 ncRNA_host +52393 chr6 HAVANA gene 35473597 35497076 3046.0 - 0 ENSG00000007866.20 protein_coding TEAD3 2 OTTHUMG00000014571.5 +52394 chr6 HAVANA gene 35497874 35512938 2958.0 - 0 ENSG00000112041.12 protein_coding TULP1 2 OTTHUMG00000014575.4 +52395 chr6 HAVANA gene 35544632 35545669 595.0 + 0 ENSG00000228559.1 lincRNA AL033519.3 1 OTTHUMG00000014573.1 +52396 chr6 HAVANA gene 35555873 35556264 392.0 + 0 ENSG00000219023.1 processed_pseudogene AL033519.2 1 OTTHUMG00000014572.1 pseudo_consens +52397 chr6 HAVANA gene 35607628 35607934 307.0 + 0 ENSG00000218749.1 processed_pseudogene AL033519.1 1 OTTHUMG00000014574.1 pseudo_consens +52398 chr6 ENSEMBL gene 35651818 35651945 128.0 + 0 ENSG00000212579.1 snoRNA RF00561 3 +52399 chr6 ENSEMBL gene 35664717 35664789 73.0 - 0 ENSG00000265527.1 miRNA MIR5690 3 +52400 chr6 HAVANA gene 35573585 35728583 10628.0 - 0 ENSG00000096060.14 protein_coding FKBP5 2 OTTHUMG00000014576.2 ncRNA_host +52401 chr6 HAVANA gene 35733867 35736947 669.0 - 0 ENSG00000232909.1 antisense AL157823.2 2 OTTHUMG00000014580.1 +52402 chr6 HAVANA gene 35737032 35749079 1418.0 + 0 ENSG00000157343.8 protein_coding ARMC12 2 OTTHUMG00000014577.3 +52403 chr6 HAVANA gene 35765908 35766927 628.0 + 0 ENSG00000220734.1 processed_pseudogene AL157823.1 1 OTTHUMG00000014579.1 pseudo_consens +52404 chr6 HAVANA gene 35776594 35779552 611.0 + 0 ENSG00000196748.9 protein_coding CLPSL2 2 OTTHUMG00000014581.3 +52405 chr6 HAVANA gene 35781017 35793675 790.0 + 0 ENSG00000204140.9 protein_coding CLPSL1 2 OTTHUMG00000014582.2 +52406 chr6 HAVANA gene 35794982 35797344 601.0 - 0 ENSG00000137392.9 protein_coding CLPS 2 OTTHUMG00000014578.1 +52407 chr6 HAVANA gene 35805293 35833874 2961.0 + 0 ENSG00000197753.9 protein_coding LHFPL5 2 OTTHUMG00000014584.3 +52408 chr6 HAVANA gene 35832966 35921342 6692.0 - 0 ENSG00000096063.15 protein_coding SRPK1 1 OTTHUMG00000014583.6 +52409 chr6 HAVANA gene 35989515 35991374 891.0 - 0 ENSG00000271304.2 transcribed_processed_pseudogene DPRXP2 2 OTTHUMG00000185252.2 overlapping_locus +52410 chr6 HAVANA gene 35943514 36024868 6036.0 - 0 ENSG00000112053.13 protein_coding SLC26A8 2 OTTHUMG00000014586.4 overlapping_locus +52411 chr6 HAVANA gene 36091991 36092646 656.0 - 0 ENSG00000237719.1 processed_pseudogene Z95152.1 1 OTTHUMG00000014585.1 pseudo_consens +52412 chr6 HAVANA gene 36027677 36111236 6860.0 + 0 ENSG00000112062.10 protein_coding MAPK14 1 OTTHUMG00000159806.3 +52413 chr6 HAVANA gene 36127809 36144524 7197.0 + 0 ENSG00000156711.16 protein_coding MAPK13 2 OTTHUMG00000014587.1 +52414 chr6 HAVANA gene 36146698 36197205 1463.0 - 0 ENSG00000246982.6 antisense Z84485.1 1 OTTHUMG00000166301.1 +52415 chr6 HAVANA gene 36196744 36232790 6613.0 + 0 ENSG00000096070.19 protein_coding BRPF3 1 OTTHUMG00000014589.8 +52416 chr6 HAVANA gene 36243203 36312229 3034.0 + 0 ENSG00000180316.12 protein_coding PNPLA1 1 OTTHUMG00000014590.7 +52417 chr6 HAVANA gene 36315757 36336885 3736.0 - 0 ENSG00000189325.6 protein_coding C6orf222 2 OTTHUMG00000014591.2 +52418 chr6 HAVANA gene 36354091 36387800 2374.0 - 0 ENSG00000010030.13 protein_coding ETV7 2 OTTHUMG00000014594.2 +52419 chr6 HAVANA gene 36386831 36393462 361.0 + 0 ENSG00000224666.3 antisense Z84484.1 1 OTTHUMG00000014592.1 +52420 chr6 HAVANA gene 36390551 36442889 2108.0 - 0 ENSG00000179165.10 protein_coding PXT1 1 OTTHUMG00000159815.3 +52421 chr6 ENSEMBL gene 36450912 36451201 290.0 - 0 ENSG00000240733.3 misc_RNA RN7SL502P 3 +52422 chr6 HAVANA gene 36442767 36491143 6239.0 + 0 ENSG00000112078.13 protein_coding KCTD20 2 OTTHUMG00000014597.3 +52423 chr6 ENSEMBL gene 36522191 36522501 311.0 + 0 ENSG00000239964.3 misc_RNA RN7SL748P 3 +52424 chr6 HAVANA gene 36493892 36547470 3576.0 - 0 ENSG00000112079.8 protein_coding STK38 2 OTTHUMG00000014598.1 +52425 chr6 HAVANA gene 36594353 36605600 7118.0 + 0 ENSG00000112081.16 protein_coding SRSF3 2 OTTHUMG00000014599.7 +52426 chr6 ENSEMBL gene 36622436 36622512 77.0 - 0 ENSG00000263894.1 miRNA MIR3925 3 +52427 chr6 ENSEMBL gene 36639545 36639672 128.0 - 0 ENSG00000238554.1 snRNA RNU1-88P 3 +52428 chr6 ENSEMBL gene 36672838 36672944 107.0 + 0 ENSG00000251864.1 misc_RNA RF00019 3 +52429 chr6 HAVANA gene 36673621 36675126 1506.0 - 0 ENSG00000281450.1 lincRNA PANDAR 2 OTTHUMG00000189732.1 overlapping_locus +52430 chr6 HAVANA gene 36673817 36675270 1454.0 + 0 ENSG00000213500.3 processed_pseudogene LAP3P2 1 OTTHUMG00000014600.1 pseudo_consens +52431 chr6 HAVANA gene 36677609 36678559 951.0 - 0 ENSG00000285244.1 bidirectional_promoter_lncRNA DINOL 2 OTTHUMG00000192391.1 +52432 chr6 HAVANA gene 36676460 36687339 3050.0 + 0 ENSG00000124762.13 protein_coding CDKN1A 2 OTTHUMG00000014603.4 +52433 chr6 HAVANA gene 36697810 36733183 4274.0 + 0 ENSG00000255587.8 protein_coding RAB44 2 OTTHUMG00000016308.5 +52434 chr6 HAVANA gene 36737050 36737986 937.0 + 0 ENSG00000220349.4 processed_pseudogene Z85996.1 2 OTTHUMG00000014601.1 +52435 chr6 HAVANA gene 36768485 36774651 1644.0 + 0 ENSG00000285888.1 lincRNA Z85996.2 2 OTTHUMG00000192752.1 +52436 chr6 HAVANA gene 36740775 36840002 6330.0 - 0 ENSG00000124772.11 protein_coding CPNE5 2 OTTHUMG00000014602.4 +52437 chr6 HAVANA gene 36854827 36875024 1810.0 - 0 ENSG00000137168.7 protein_coding PPIL1 2 OTTHUMG00000014612.1 +52438 chr6 HAVANA gene 36871870 36928964 7340.0 + 0 ENSG00000198663.16 protein_coding C6orf89 2 OTTHUMG00000014613.3 +52439 chr6 HAVANA gene 36940071 36944675 497.0 - 0 ENSG00000232598.2 lincRNA AL122034.1 2 OTTHUMG00000014610.2 +52440 chr6 HAVANA gene 36948263 36964837 2332.0 + 0 ENSG00000164530.14 protein_coding PI16 2 OTTHUMG00000014611.3 +52441 chr6 HAVANA gene 36968141 36986298 3126.0 - 0 ENSG00000137409.19 protein_coding MTCH1 2 OTTHUMG00000014614.3 +52442 chr6 HAVANA gene 37005646 37029070 10167.0 + 0 ENSG00000146192.14 protein_coding FGD2 2 OTTHUMG00000014616.2 +52443 chr6 HAVANA gene 37044860 37045189 330.0 + 0 ENSG00000226976.3 processed_pseudogene COX6A1P2 2 OTTHUMG00000014615.2 +52444 chr6 HAVANA gene 37091314 37091806 493.0 + 0 ENSG00000216412.4 processed_pseudogene RPL12P2 1 OTTHUMG00000014617.2 pseudo_consens +52445 chr6 HAVANA gene 37170203 37175426 2977.0 + 0 ENSG00000137193.13 protein_coding PIM1 2 OTTHUMG00000016426.1 +52446 chr6 HAVANA gene 37212180 37258155 2737.0 - 0 ENSG00000172738.11 protein_coding TMEM217 2 OTTHUMG00000014618.3 +52447 chr6 HAVANA gene 37295584 37295742 159.0 - 0 ENSG00000275550.1 processed_pseudogene AL096712.1 2 OTTHUMG00000187614.1 +52448 chr6 HAVANA gene 37257772 37332970 3462.0 + 0 ENSG00000065491.8 protein_coding TBC1D22B 2 OTTHUMG00000014619.1 +52449 chr6 ENSEMBL gene 37361185 37361483 299.0 + 0 ENSG00000239953.3 misc_RNA RN7SL273P 3 +52450 chr6 HAVANA gene 37353972 37394738 6575.0 + 0 ENSG00000112130.16 protein_coding RNF8 2 OTTHUMG00000014620.4 ncRNA_host +52451 chr6 HAVANA gene 37433219 37482827 5274.0 + 0 ENSG00000137200.12 protein_coding CMTR1 2 OTTHUMG00000014624.4 +52452 chr6 HAVANA gene 37482920 37499922 619.0 - 0 ENSG00000198937.8 protein_coding CCDC167 2 OTTHUMG00000014625.1 +52453 chr6 HAVANA gene 37507348 37535616 537.0 + 0 ENSG00000204110.6 lincRNA LINC02520 2 OTTHUMG00000177812.2 +52454 chr6 HAVANA gene 37543553 37547280 943.0 - 0 ENSG00000229559.2 transcribed_processed_pseudogene AL353597.2 1 OTTHUMG00000014621.2 pseudo_consens +52455 chr6 HAVANA gene 37545145 37550860 998.0 + 0 ENSG00000227920.2 lincRNA AL353597.1 1 OTTHUMG00000014623.2 +52456 chr6 ENSEMBL gene 37555365 37555422 58.0 - 0 ENSG00000263926.1 miRNA MIR4462 3 +52457 chr6 HAVANA gene 37567716 37571460 3745.0 + 0 ENSG00000279942.1 TEC AL353597.3 2 OTTHUMG00000175913.1 +52458 chr6 HAVANA gene 37630679 37699306 14187.0 - 0 ENSG00000112139.15 protein_coding MDGA1 1 OTTHUMG00000014626.7 +52459 chr6 HAVANA gene 37815777 37819218 419.0 - 0 ENSG00000225945.1 antisense AL121574.1 2 OTTHUMG00000014627.1 +52460 chr6 ENSEMBL gene 37832922 37833185 264.0 - 0 ENSG00000243313.2 misc_RNA RN7SL285P 3 +52461 chr6 ENSEMBL gene 37915573 37915742 170.0 + 0 ENSG00000200597.1 snRNA RNU1-87P 3 +52462 chr6 HAVANA gene 38002832 38003313 482.0 - 0 ENSG00000218521.1 processed_pseudogene AL589655.1 1 OTTHUMG00000014628.1 pseudo_consens +52463 chr6 HAVANA gene 37819499 38154624 4036.0 + 0 ENSG00000156639.11 protein_coding ZFAND3 1 OTTHUMG00000014629.6 ncRNA_host +52464 chr6 ENSEMBL gene 38207274 38207345 72.0 + 0 ENSG00000200706.1 snoRNA RF00279 3 +52465 chr6 HAVANA gene 38481692 38482531 560.0 + 0 ENSG00000226533.1 antisense BTBD9-AS1 1 OTTHUMG00000014632.1 +52466 chr6 ENSEMBL gene 38565950 38566055 106.0 + 0 ENSG00000199938.1 misc_RNA RF00019 3 +52467 chr6 HAVANA gene 38587323 38588529 1207.0 + 0 ENSG00000217227.1 processed_pseudogene AL079341.1 1 OTTHUMG00000014633.1 pseudo_consens +52468 chr6 HAVANA gene 38168451 38640148 9537.0 - 0 ENSG00000183826.17 protein_coding BTBD9 1 OTTHUMG00000014634.9 +52469 chr6 HAVANA gene 38675925 38703141 2352.0 - 0 ENSG00000124767.6 protein_coding GLO1 2 OTTHUMG00000014636.2 +52470 chr6 HAVANA gene 38714051 38715217 400.0 - 0 ENSG00000236355.2 lincRNA AL391415.1 2 OTTHUMG00000014635.2 +52471 chr6 ENSEMBL gene 38744086 38744386 301.0 + 0 ENSG00000244297.3 misc_RNA RN7SL465P 3 +52472 chr6 HAVANA gene 38762905 38764694 1790.0 + 0 ENSG00000219273.1 processed_pseudogene AL035555.1 1 OTTHUMG00000016180.1 pseudo_consens,overlapping_locus +52473 chr6 ENSEMBL gene 38822307 38822404 98.0 - 0 ENSG00000212586.1 snoRNA RF00393 3 +52474 chr6 HAVANA gene 38928031 38928153 123.0 + 0 ENSG00000220076.1 processed_pseudogene AL034345.1 2 OTTHUMG00000016233.1 overlapping_locus +52475 chr6 HAVANA gene 38923029 38953099 1213.0 - 0 ENSG00000231150.5 antisense AL034345.2 2 OTTHUMG00000014637.1 +52476 chr6 HAVANA gene 38715341 39030529 15055.0 + 0 ENSG00000124721.17 protein_coding DNAH8 1 OTTHUMG00000016253.5 ncRNA_host,overlapping_locus +52477 chr6 HAVANA gene 39039603 39039985 383.0 - 0 ENSG00000220556.4 processed_pseudogene AL035690.1 1 OTTHUMG00000014639.1 pseudo_consens +52478 chr6 HAVANA gene 39048798 39087743 3105.0 + 0 ENSG00000112164.5 protein_coding GLP1R 2 OTTHUMG00000014638.1 +52479 chr6 HAVANA gene 39110321 39112952 2632.0 + 0 ENSG00000217165.1 processed_pseudogene ANKRD18EP 1 OTTHUMG00000014640.1 pseudo_consens +52480 chr6 HAVANA gene 39104064 39115189 2925.0 - 0 ENSG00000112167.9 protein_coding SAYSD1 2 OTTHUMG00000014641.1 +52481 chr6 HAVANA gene 39188973 39229450 3756.0 - 0 ENSG00000164626.8 protein_coding KCNK5 2 OTTHUMG00000014642.1 +52482 chr6 HAVANA gene 39299001 39314553 2172.0 - 0 ENSG00000124780.13 protein_coding KCNK17 2 OTTHUMG00000014646.2 +52483 chr6 HAVANA gene 39314698 39322968 1860.0 - 0 ENSG00000095981.10 protein_coding KCNK16 2 OTTHUMG00000014645.3 +52484 chr6 HAVANA gene 39353747 39354172 426.0 + 0 ENSG00000218986.1 processed_pseudogene AL136087.1 1 OTTHUMG00000014644.1 pseudo_consens +52485 chr6 HAVANA gene 39553811 39554943 1133.0 + 0 ENSG00000231276.2 processed_pseudogene E2F4P1 1 OTTHUMG00000014650.3 pseudo_consens +52486 chr6 ENSEMBL gene 39620345 39620464 120.0 - 0 ENSG00000252990.1 snRNA RNU1-54P 3 +52487 chr6 HAVANA gene 39329990 39725405 11868.0 - 0 ENSG00000164627.17 protein_coding KIF6 2 OTTHUMG00000014648.4 ncRNA_host +52488 chr6 HAVANA gene 39818751 39823227 4477.0 + 0 ENSG00000281969.1 TEC AL592158.1 2 OTTHUMG00000191456.1 +52489 chr6 HAVANA gene 39881804 39900071 6854.0 - 0 ENSG00000235033.7 antisense AL590999.1 2 OTTHUMG00000014652.2 overlapping_locus +52490 chr6 HAVANA gene 39792298 39904877 12955.0 + 0 ENSG00000146122.16 protein_coding DAAM2 2 OTTHUMG00000014653.4 +52491 chr6 HAVANA gene 39899578 39934551 5174.0 - 0 ENSG00000124615.19 protein_coding MOCS1 2 OTTHUMG00000014656.7 overlapping_locus +52492 chr6 HAVANA gene 39958414 39958833 420.0 - 0 ENSG00000180211.5 processed_pseudogene FO393411.1 1 OTTHUMG00000014654.1 pseudo_consens +52493 chr6 HAVANA gene 39934595 40000527 1708.0 + 0 ENSG00000220586.2 transcribed_processed_pseudogene TUBBP9 1 OTTHUMG00000014655.2 pseudo_consens +52494 chr6 HAVANA gene 40271566 40276237 539.0 - 0 ENSG00000227131.1 lincRNA AL139275.2 1 OTTHUMG00000014657.1 +52495 chr6 HAVANA gene 40344344 40346151 554.0 - 0 ENSG00000204092.2 lincRNA LINC00951 1 OTTHUMG00000014658.1 +52496 chr6 HAVANA gene 40358744 40369474 824.0 - 0 ENSG00000226070.1 lincRNA AL139275.1 2 OTTHUMG00000014659.1 +52497 chr6 HAVANA gene 40334954 40379887 1617.0 + 0 ENSG00000204091.7 antisense TDRG1 2 OTTHUMG00000014660.2 +52498 chr6 ENSEMBL gene 40407853 40407955 103.0 + 0 ENSG00000252767.1 snRNA RNU6-250P 3 +52499 chr6 HAVANA gene 40501631 40502393 292.0 - 0 ENSG00000236075.1 sense_intronic AL359475.1 1 OTTHUMG00000014661.1 overlapping_locus +52500 chr6 HAVANA gene 40505507 40523963 1342.0 - 0 ENSG00000226454.2 processed_transcript AL033380.1 1 OTTHUMG00000014663.3 overlapping_locus +52501 chr6 HAVANA gene 40391586 40587465 3270.0 - 0 ENSG00000156564.8 protein_coding LRFN2 2 OTTHUMG00000014662.1 overlapping_locus +52502 chr6 HAVANA gene 40713411 40715363 613.0 - 0 ENSG00000237947.1 lincRNA AL583854.1 2 OTTHUMG00000014664.1 +52503 chr6 HAVANA gene 41026911 41039217 3136.0 - 0 ENSG00000124602.9 protein_coding UNC5CL 2 OTTHUMG00000014665.1 overlapping_locus +52504 chr6 HAVANA gene 41042554 41044337 988.0 + 0 ENSG00000112212.11 protein_coding TSPO2 1 OTTHUMG00000014666.2 +52505 chr6 HAVANA gene 41053304 41064511 1151.0 + 0 ENSG00000124701.5 protein_coding APOBEC2 2 OTTHUMG00000014670.1 +52506 chr6 HAVANA gene 41033627 41097787 6523.0 - 0 ENSG00000124596.16 protein_coding OARD1 1 OTTHUMG00000014667.4 overlapping_locus +52507 chr6 HAVANA gene 41072945 41099976 3811.0 + 0 ENSG00000001167.14 protein_coding NFYA 2 OTTHUMG00000014669.1 +52508 chr6 HAVANA gene 41101022 41140835 5741.0 + 0 ENSG00000161912.18 transcribed_unprocessed_pseudogene ADCY10P1 2 OTTHUMG00000014668.5 +52509 chr6 HAVANA gene 41149342 41154337 1483.0 - 0 ENSG00000161911.11 protein_coding TREML1 2 OTTHUMG00000016231.3 +52510 chr6 HAVANA gene 41158506 41163186 1095.0 - 0 ENSG00000095970.16 protein_coding TREM2 2 OTTHUMG00000014671.2 +52511 chr6 HAVANA gene 41190277 41201194 3302.0 - 0 ENSG00000112195.8 protein_coding TREML2 2 OTTHUMG00000016349.3 +52512 chr6 HAVANA gene 41208713 41217947 978.0 - 0 ENSG00000184106.8 transcribed_unprocessed_pseudogene TREML3P 2 OTTHUMG00000177313.1 +52513 chr6 HAVANA gene 41228324 41238882 2712.0 + 0 ENSG00000188056.11 protein_coding TREML4 2 OTTHUMG00000016408.2 +52514 chr6 ENSEMBL gene 41239520 41239626 107.0 - 0 ENSG00000212176.1 rRNA_pseudogene RNA5SP207 3 +52515 chr6 HAVANA gene 41247369 41249649 576.0 + 0 ENSG00000225690.1 unprocessed_pseudogene TREML5P 2 OTTHUMG00000154701.1 +52516 chr6 HAVANA gene 41250851 41251097 247.0 + 0 ENSG00000274256.1 processed_pseudogene AL391903.2 2 OTTHUMG00000187617.1 +52517 chr6 HAVANA gene 41252696 41252858 163.0 + 0 ENSG00000278745.1 processed_pseudogene AL391903.3 2 OTTHUMG00000187619.1 +52518 chr6 HAVANA gene 41269875 41270239 365.0 - 0 ENSG00000218809.1 unprocessed_pseudogene AL391903.1 2 OTTHUMG00000014676.1 overlapping_locus +52519 chr6 HAVANA gene 41267926 41286719 4329.0 - 0 ENSG00000124731.12 protein_coding TREM1 1 OTTHUMG00000014674.2 overlapping_locus +52520 chr6 ENSEMBL gene 41302466 41302572 107.0 - 0 ENSG00000206745.1 snRNA RNU6-643P 3 +52521 chr6 HAVANA gene 41308166 41308565 400.0 - 0 ENSG00000213461.3 processed_pseudogene AL672212.1 1 OTTHUMG00000014677.1 pseudo_consens +52522 chr6 HAVANA gene 41335655 41350887 1219.0 + 0 ENSG00000096264.13 protein_coding NCR2 2 OTTHUMG00000014678.5 +52523 chr6 HAVANA gene 41381392 41381832 441.0 - 0 ENSG00000279284.1 TEC AL136967.1 2 OTTHUMG00000046223.1 +52524 chr6 HAVANA gene 41405819 41406561 743.0 + 0 ENSG00000280371.1 TEC AL136967.2 2 OTTHUMG00000046224.1 +52525 chr6 HAVANA gene 41502444 41519852 999.0 + 0 ENSG00000226917.5 lincRNA LINC01276 2 OTTHUMG00000067927.3 +52526 chr6 HAVANA gene 41494853 41548621 934.0 - 0 ENSG00000234753.5 antisense FOXP4-AS1 2 OTTHUMG00000014680.3 +52527 chr6 ENSEMBL gene 41598723 41598788 66.0 + 0 ENSG00000266494.1 miRNA MIR4641 3 +52528 chr6 HAVANA gene 41546426 41602384 6170.0 + 0 ENSG00000137166.14 protein_coding FOXP4 2 OTTHUMG00000014679.8 ncRNA_host +52529 chr6 HAVANA gene 41636882 41654246 2523.0 + 0 ENSG00000112559.13 protein_coding MDFI 2 OTTHUMG00000014681.6 +52530 chr6 HAVANA gene 41666906 41667649 744.0 + 0 ENSG00000230913.1 processed_pseudogene NPM1P51 1 OTTHUMG00000014682.2 pseudo_consens +52531 chr6 HAVANA gene 41720396 41734032 408.0 + 0 ENSG00000231102.1 antisense AL035588.1 2 OTTHUMG00000046284.2 +52532 chr6 HAVANA gene 41683978 41736259 5648.0 - 0 ENSG00000112561.17 protein_coding TFEB 2 OTTHUMG00000014684.13 +52533 chr6 HAVANA gene 41736711 41754109 2025.0 - 0 ENSG00000096088.16 protein_coding PGC 1 OTTHUMG00000014683.7 +52534 chr6 HAVANA gene 41764292 41764460 169.0 - 0 ENSG00000269387.1 lincRNA AL365205.3 2 OTTHUMG00000183011.1 +52535 chr6 HAVANA gene 41770176 41786542 2858.0 - 0 ENSG00000137218.10 protein_coding FRS3 2 OTTHUMG00000014686.6 +52536 chr6 HAVANA gene 41780762 41787372 2205.0 + 0 ENSG00000278224.6 protein_coding PRICKLE4 2 OTTHUMG00000188149.3 overlapping_locus +52537 chr6 HAVANA gene 41787662 41789898 637.0 + 0 ENSG00000214736.7 protein_coding TOMM6 2 OTTHUMG00000137505.1 overlapping_locus +52538 chr6 HAVANA gene 41780349 41790141 4479.0 + 0 ENSG00000124593.16 protein_coding AL365205.1 2 OTTHUMG00000014685.9 overlapping_locus +52539 chr6 HAVANA gene 41791410 41791477 68.0 + 0 ENSG00000268745.1 antisense AL365205.2 2 OTTHUMG00000183012.1 +52540 chr6 ENSEMBL gene 41832854 41832993 140.0 + 0 ENSG00000206977.1 snoRNA RF00393 3 +52541 chr6 HAVANA gene 41868622 41869731 403.0 + 0 ENSG00000227516.1 lincRNA AL160163.1 2 OTTHUMG00000046310.1 +52542 chr6 HAVANA gene 41789896 41895361 10921.0 - 0 ENSG00000164663.14 protein_coding USP49 2 OTTHUMG00000014688.10 +52543 chr6 ENSEMBL gene 41917416 41917526 111.0 - 0 ENSG00000207371.1 misc_RNA RF00019 3 +52544 chr6 HAVANA gene 41905354 41921139 3278.0 - 0 ENSG00000124641.15 protein_coding MED20 2 OTTHUMG00000014689.6 ncRNA_host +52545 chr6 HAVANA gene 41921188 41933046 2248.0 + 0 ENSG00000112578.9 protein_coding BYSL 2 OTTHUMG00000014687.2 +52546 chr6 ENSEMBL gene 42018408 42018514 107.0 - 0 ENSG00000206875.1 snRNA RNU6-761P 3 +52547 chr6 HAVANA gene 42030053 42031382 161.0 + 0 ENSG00000223946.1 lincRNA AL513008.1 2 OTTHUMG00000014691.1 +52548 chr6 HAVANA gene 41934933 42050357 5802.0 - 0 ENSG00000112576.12 protein_coding CCND3 2 OTTHUMG00000014690.8 ncRNA_host +52549 chr6 HAVANA gene 42050513 42087461 9286.0 + 0 ENSG00000137413.15 protein_coding TAF8 1 OTTHUMG00000014692.3 +52550 chr6 HAVANA gene 42092233 42094259 2027.0 - 0 ENSG00000261068.2 lincRNA AL512274.1 2 OTTHUMG00000175914.2 +52551 chr6 HAVANA gene 42101118 42142619 6852.0 - 0 ENSG00000188112.8 protein_coding C6orf132 1 OTTHUMG00000014695.3 +52552 chr6 HAVANA gene 42155426 42163439 688.0 + 0 ENSG00000214732.2 protein_coding AL096814.1 2 OTTHUMG00000014693.3 overlapping_locus +52553 chr6 HAVANA gene 42155406 42180056 2341.0 + 0 ENSG00000048545.13 protein_coding GUCA1A 2 OTTHUMG00000014696.3 overlapping_locus +52554 chr6 HAVANA gene 42184401 42194916 1113.0 - 0 ENSG00000112599.8 protein_coding GUCA1B 2 OTTHUMG00000014697.1 +52555 chr6 HAVANA gene 42206801 42217865 2110.0 - 0 ENSG00000048544.5 protein_coding MRPS10 2 OTTHUMG00000014694.1 +52556 chr6 HAVANA gene 42224931 42452051 7732.0 - 0 ENSG00000124496.12 protein_coding TRERF1 2 OTTHUMG00000014698.2 +52557 chr6 HAVANA gene 42499710 42500022 313.0 + 0 ENSG00000237107.3 processed_pseudogene AL591473.1 1 OTTHUMG00000014699.2 pseudo_consens +52558 chr6 ENSEMBL gene 42664162 42664268 107.0 + 0 ENSG00000206848.1 snRNA RNU6-890P 3 +52559 chr6 HAVANA gene 42564062 42693504 8840.0 + 0 ENSG00000024048.10 protein_coding UBR2 2 OTTHUMG00000014703.2 ncRNA_host +52560 chr6 HAVANA gene 42696600 42722574 2976.0 - 0 ENSG00000112619.7 protein_coding PRPH2 2 OTTHUMG00000014701.2 +52561 chr6 HAVANA gene 42727234 42727700 467.0 + 0 ENSG00000213435.3 processed_pseudogene ATP6V0CP3 1 OTTHUMG00000014702.1 pseudo_consens +52562 chr6 HAVANA gene 42744481 42746096 1616.0 - 0 ENSG00000124659.6 protein_coding TBCC 2 OTTHUMG00000014704.1 +52563 chr6 HAVANA gene 42746958 42868560 6843.0 + 0 ENSG00000112624.12 protein_coding BICRAL 2 OTTHUMG00000014706.3 +52564 chr6 HAVANA gene 42879618 42889925 7809.0 + 0 ENSG00000146223.14 protein_coding RPL7L1 2 OTTHUMG00000014710.4 +52565 chr6 HAVANA gene 42890265 42890816 552.0 - 0 ENSG00000221821.3 protein_coding C6orf226 2 OTTHUMG00000156926.1 +52566 chr6 HAVANA gene 42915989 42925835 1168.0 + 0 ENSG00000171611.9 protein_coding PTCRA 2 OTTHUMG00000014709.2 +52567 chr6 HAVANA gene 42929192 42939287 1712.0 + 0 ENSG00000137161.16 protein_coding CNPY3 2 OTTHUMG00000014708.1 +52568 chr6 HAVANA gene 42940364 42948360 1490.0 + 0 ENSG00000231113.2 antisense AL035587.1 2 OTTHUMG00000014707.3 +52569 chr6 HAVANA gene 42956345 42956765 421.0 - 0 ENSG00000181524.6 processed_pseudogene RPL24P4 1 OTTHUMG00000014711.2 pseudo_consens +52570 chr6 HAVANA gene 42960758 42963880 1072.0 + 0 ENSG00000124713.5 protein_coding GNMT 2 OTTHUMG00000014712.1 +52571 chr6 HAVANA gene 42963870 42979220 3499.0 - 0 ENSG00000124587.13 protein_coding PEX6 2 OTTHUMG00000014713.1 +52572 chr6 HAVANA gene 42984499 43012342 3314.0 + 0 ENSG00000112640.14 protein_coding PPP2R5D 1 OTTHUMG00000014716.4 +52573 chr6 HAVANA gene 43011143 43016868 3017.0 - 0 ENSG00000124733.4 protein_coding MEA1 2 OTTHUMG00000014717.3 +52574 chr6 HAVANA gene 43014103 43021298 2019.0 + 0 ENSG00000124702.17 protein_coding KLHDC3 2 OTTHUMG00000014714.2 +52575 chr6 HAVANA gene 43021645 43034156 2212.0 + 0 ENSG00000124541.6 protein_coding RRP36 2 OTTHUMG00000014715.2 +52576 chr6 HAVANA gene 43033897 43034405 509.0 - 0 ENSG00000272223.1 antisense AL136304.1 2 OTTHUMG00000185747.1 +52577 chr6 ENSEMBL gene 43036196 43036500 305.0 - 0 ENSG00000240625.3 misc_RNA RN7SL403P 3 +52578 chr6 HAVANA gene 43037617 43053945 5628.0 - 0 ENSG00000044090.8 protein_coding CUL7 2 OTTHUMG00000014718.1 +52579 chr6 HAVANA gene 43054029 43059806 2539.0 - 0 ENSG00000112651.11 protein_coding MRPL2 1 OTTHUMG00000014719.2 +52580 chr6 HAVANA gene 43074331 43074739 409.0 - 0 ENSG00000272170.1 antisense AL355385.1 2 OTTHUMG00000185748.1 +52581 chr6 HAVANA gene 43040777 43075099 6421.0 + 0 ENSG00000137171.14 protein_coding KLC4 1 OTTHUMG00000014720.7 +52582 chr6 HAVANA gene 43076268 43161719 9024.0 + 0 ENSG00000112655.15 protein_coding PTK7 2 OTTHUMG00000014721.4 +52583 chr6 HAVANA gene 43171299 43181507 4202.0 + 0 ENSG00000112658.7 protein_coding SRF 2 OTTHUMG00000014722.2 +52584 chr6 HAVANA gene 43213801 43223860 980.0 - 0 ENSG00000245261.1 antisense AL133375.1 2 OTTHUMG00000159928.1 +52585 chr6 HAVANA gene 43182175 43224587 12251.0 + 0 ENSG00000112659.13 protein_coding CUL9 1 OTTHUMG00000014723.3 +52586 chr6 HAVANA gene 43225629 43229484 1250.0 - 0 ENSG00000112667.12 protein_coding DNPH1 2 OTTHUMG00000014724.2 +52587 chr6 HAVANA gene 43243680 43288259 7503.0 + 0 ENSG00000146216.12 protein_coding TTBK1 1 OTTHUMG00000014725.6 +52588 chr6 HAVANA gene 43295694 43305538 3527.0 + 0 ENSG00000137204.14 protein_coding SLC22A7 2 OTTHUMG00000014726.7 +52589 chr6 HAVANA gene 43299710 43308797 2453.0 - 0 ENSG00000146215.13 protein_coding CRIP3 2 OTTHUMG00000014727.2 overlapping_locus +52590 chr6 HAVANA gene 43310231 43310357 127.0 + 0 ENSG00000219222.1 processed_pseudogene RPL12P47 2 OTTHUMG00000014728.1 +52591 chr6 HAVANA gene 43328134 43328476 343.0 + 0 ENSG00000220614.1 processed_pseudogene AL583834.1 1 OTTHUMG00000014729.1 pseudo_consens +52592 chr6 HAVANA gene 43363479 43364219 741.0 + 0 ENSG00000179157.4 processed_pseudogene RPS2P28 1 OTTHUMG00000014730.1 pseudo_consens +52593 chr6 HAVANA gene 43364220 43364294 75.0 + 0 ENSG00000226558.1 processed_pseudogene AL590383.1 1 OTTHUMG00000014731.1 pseudo_consens +52594 chr6 HAVANA gene 43307134 43369478 9559.0 - 0 ENSG00000171467.15 protein_coding ZNF318 2 OTTHUMG00000014732.3 overlapping_locus +52595 chr6 ENSEMBL gene 43434542 43434620 79.0 + 0 ENSG00000276770.1 miRNA MIR6780B 3 +52596 chr6 HAVANA gene 43427366 43450430 8083.0 + 0 ENSG00000124574.14 protein_coding ABCC10 2 OTTHUMG00000014733.4 ncRNA_host +52597 chr6 HAVANA gene 43450352 43456632 2236.0 - 0 ENSG00000171462.14 protein_coding DLK2 2 OTTHUMG00000014735.2 +52598 chr6 ENSEMBL gene 43474186 43474292 107.0 + 0 ENSG00000207076.1 snRNA RNU6-1113P 3 +52599 chr6 HAVANA gene 43477523 43506556 6741.0 + 0 ENSG00000137221.14 protein_coding TJAP1 2 OTTHUMG00000014736.8 +52600 chr6 HAVANA gene 43506969 43510686 2121.0 - 0 ENSG00000204052.4 protein_coding LRRC73 2 OTTHUMG00000014737.1 +52601 chr6 HAVANA gene 43511827 43516990 3053.0 - 0 ENSG00000137207.11 protein_coding YIPF3 1 OTTHUMG00000014738.5 +52602 chr6 HAVANA gene 43519180 43519724 545.0 - 0 ENSG00000271754.1 antisense AL355802.2 2 OTTHUMG00000185749.1 +52603 chr6 HAVANA gene 43538822 43539703 882.0 - 0 ENSG00000219470.1 processed_pseudogene AL355802.1 1 OTTHUMG00000014740.1 pseudo_consens,overlapping_locus +52604 chr6 ENSEMBL gene 43544144 43544270 127.0 + 0 ENSG00000252218.1 scaRNA RF00426 3 +52605 chr6 HAVANA gene 43509702 43562419 5550.0 + 0 ENSG00000171453.18 protein_coding POLR1C 2 OTTHUMG00000014739.12 ncRNA_host +52606 chr6 HAVANA gene 43522330 43576075 8522.0 - 0 ENSG00000124571.17 protein_coding XPO5 2 OTTHUMG00000014742.10 overlapping_locus +52607 chr6 HAVANA gene 43588230 43591362 990.0 - 0 ENSG00000203362.2 antisense POLH-AS1 2 OTTHUMG00000014741.1 +52608 chr6 HAVANA gene 43576150 43615660 3540.0 + 0 ENSG00000170734.11 protein_coding POLH 2 OTTHUMG00000014743.2 +52609 chr6 HAVANA gene 43605316 43629162 4624.0 - 0 ENSG00000172432.18 protein_coding GTPBP2 2 OTTHUMG00000014744.12 +52610 chr6 HAVANA gene 43629540 43640952 1880.0 + 0 ENSG00000124688.13 protein_coding MAD2L1BP 2 OTTHUMG00000014747.2 +52611 chr6 HAVANA gene 43645046 43672599 2631.0 + 0 ENSG00000172426.15 protein_coding RSPH9 2 OTTHUMG00000014746.1 +52612 chr6 HAVANA gene 43671303 43687791 1284.0 - 0 ENSG00000096080.11 protein_coding MRPS18A 2 OTTHUMG00000014750.3 +52613 chr6 HAVANA gene 43705949 43706751 803.0 - 0 ENSG00000218107.1 processed_pseudogene AL136131.1 1 OTTHUMG00000014748.1 pseudo_consens +52614 chr6 HAVANA gene 43722786 43737834 348.0 - 0 ENSG00000236961.1 lincRNA AL136131.2 2 OTTHUMG00000014749.1 +52615 chr6 HAVANA gene 43770429 43770616 188.0 - 0 ENSG00000272114.1 antisense AL136131.3 2 OTTHUMG00000185751.1 +52616 chr6 HAVANA gene 43770184 43786487 14431.0 + 0 ENSG00000112715.21 protein_coding VEGFA 2 OTTHUMG00000014745.13 +52617 chr6 HAVANA gene 43803193 43842625 480.0 + 0 ENSG00000283573.1 lincRNA AL157371.2 2 OTTHUMG00000191624.1 +52618 chr6 HAVANA gene 43844878 43852317 1367.0 - 0 ENSG00000283215.2 lincRNA LINC02537 2 OTTHUMG00000191625.2 +52619 chr6 HAVANA gene 43851757 43852333 394.0 - 0 ENSG00000223469.1 lincRNA AL157371.1 2 OTTHUMG00000014751.1 +52620 chr6 HAVANA gene 44000580 44005958 3917.0 + 0 ENSG00000181577.15 protein_coding C6orf223 1 OTTHUMG00000014753.4 +52621 chr6 HAVANA gene 43995723 44074652 2296.0 - 0 ENSG00000237686.6 antisense AL109615.3 2 OTTHUMG00000014752.2 +52622 chr6 HAVANA gene 44073913 44077952 1608.0 + 0 ENSG00000231881.1 lincRNA AL109615.2 2 OTTHUMG00000014754.1 +52623 chr6 HAVANA gene 44089242 44089696 455.0 - 0 ENSG00000183239.5 processed_pseudogene AL109615.1 1 OTTHUMG00000014755.1 pseudo_consens +52624 chr6 HAVANA gene 44113454 44127457 959.0 - 0 ENSG00000180992.6 protein_coding MRPL14 2 OTTHUMG00000014756.2 +52625 chr6 HAVANA gene 44126914 44155519 4425.0 + 0 ENSG00000137216.18 protein_coding TMEM63B 2 OTTHUMG00000014757.3 +52626 chr6 HAVANA gene 44158811 44184402 3549.0 + 0 ENSG00000137225.12 protein_coding CAPN11 1 OTTHUMG00000014758.4 +52627 chr6 ENSEMBL gene 44209766 44210063 298.0 + 0 ENSG00000265439.2 misc_RNA RN7SL811P 3 +52628 chr6 HAVANA gene 44216939 44218236 843.0 + 0 ENSG00000262179.2 protein_coding MYMX 2 OTTHUMG00000177883.3 +52629 chr6 HAVANA gene 44219505 44234151 3333.0 + 0 ENSG00000112759.17 protein_coding SLC29A1 2 OTTHUMG00000014759.3 +52630 chr6 HAVANA gene 44246166 44253888 2980.0 + 0 ENSG00000096384.19 protein_coding HSP90AB1 2 OTTHUMG00000014761.7 +52631 chr6 ENSEMBL gene 44254206 44254285 80.0 - 0 ENSG00000284427.1 miRNA MIR4647 3 +52632 chr6 HAVANA gene 44254096 44257890 2363.0 - 0 ENSG00000157593.18 protein_coding SLC35B2 1 OTTHUMG00000014760.2 ncRNA_host +52633 chr6 HAVANA gene 44258166 44265788 2581.0 - 0 ENSG00000146232.16 protein_coding NFKBIE 2 OTTHUMG00000014762.8 +52634 chr6 HAVANA gene 44278743 44297688 3067.0 - 0 ENSG00000146221.9 protein_coding TCTE1 2 OTTHUMG00000014763.1 +52635 chr6 HAVANA gene 44270466 44307506 5459.0 + 0 ENSG00000178233.17 protein_coding TMEM151B 2 OTTHUMG00000014765.4 overlapping_locus +52636 chr6 HAVANA gene 44299654 44313326 4298.0 - 0 ENSG00000124608.4 protein_coding AARS2 2 OTTHUMG00000014766.3 +52637 chr6 HAVANA gene 44342660 44377167 1569.0 + 0 ENSG00000249481.6 protein_coding SPATS1 1 OTTHUMG00000014764.5 overlapping_locus +52638 chr6 HAVANA gene 44273194 44378957 3513.0 + 0 ENSG00000272442.2 protein_coding AL353588.1 2 OTTHUMG00000185389.1 overlapping_locus +52639 chr6 ENSEMBL gene 44435641 44435722 82.0 + 0 ENSG00000266619.1 miRNA MIR4642 3 +52640 chr6 HAVANA gene 44387525 44450426 6423.0 + 0 ENSG00000096401.7 protein_coding CDC5L 2 OTTHUMG00000014767.1 ncRNA_host +52641 chr6 HAVANA gene 44525259 44526754 473.0 + 0 ENSG00000237530.1 lincRNA AL136140.1 2 OTTHUMG00000014768.1 +52642 chr6 HAVANA gene 44551577 44553281 1705.0 + 0 ENSG00000279076.1 TEC AL136140.2 2 OTTHUMG00000175916.1 +52643 chr6 HAVANA gene 44898711 44899295 585.0 + 0 ENSG00000270900.1 processed_pseudogene NUDT19P4 1 OTTHUMG00000184541.1 pseudo_consens +52644 chr6 HAVANA gene 45097496 45097976 239.0 + 0 ENSG00000276156.1 unprocessed_pseudogene AL138880.2 2 OTTHUMG00000187622.1 +52645 chr6 HAVANA gene 45098021 45099260 1240.0 + 0 ENSG00000277769.1 processed_pseudogene RBM22P4 2 OTTHUMG00000187623.1 +52646 chr6 HAVANA gene 45158870 45159511 642.0 + 0 ENSG00000219384.1 processed_pseudogene AL138880.1 1 OTTHUMG00000014770.1 pseudo_consens +52647 chr6 ENSEMBL gene 45197674 45197770 97.0 - 0 ENSG00000207769.1 miRNA MIR586 3 +52648 chr6 HAVANA gene 44809317 45377953 3194.0 - 0 ENSG00000196284.15 protein_coding SUPT3H 2 OTTHUMG00000014773.5 ncRNA_host +52649 chr6 HAVANA gene 45421079 45422005 927.0 - 0 ENSG00000271857.1 antisense AL096865.1 2 OTTHUMG00000185755.1 +52650 chr6 HAVANA gene 45573346 45576770 1513.0 - 0 ENSG00000261080.1 lincRNA RUNX2-AS1 2 OTTHUMG00000175917.1 +52651 chr6 HAVANA gene 45328157 45664349 8192.0 + 0 ENSG00000124813.21 protein_coding RUNX2 2 OTTHUMG00000014774.9 +52652 chr6 ENSEMBL gene 46018745 46018851 107.0 + 0 ENSG00000212468.1 snRNA RNU6-754P 3 +52653 chr6 HAVANA gene 45880827 46080348 9395.0 - 0 ENSG00000112782.16 protein_coding CLIC5 2 OTTHUMG00000014775.8 +52654 chr6 HAVANA gene 46097093 46129706 739.0 - 0 ENSG00000231769.2 antisense AL035701.1 2 OTTHUMG00000014778.2 +52655 chr6 HAVANA gene 46129993 46146699 4651.0 + 0 ENSG00000001561.6 protein_coding ENPP4 2 OTTHUMG00000014779.2 +52656 chr6 HAVANA gene 46159187 46170971 4264.0 - 0 ENSG00000112796.9 protein_coding ENPP5 2 OTTHUMG00000014781.2 +52657 chr6 HAVANA gene 46204729 46207386 2658.0 + 0 ENSG00000229349.2 processed_pseudogene ACTG1P9 1 OTTHUMG00000014780.1 pseudo_consens +52658 chr6 HAVANA gene 46438310 46438619 310.0 + 0 ENSG00000226541.1 processed_pseudogene AL359633.1 1 OTTHUMG00000157123.1 pseudo_consens +52659 chr6 HAVANA gene 46220736 46491972 3712.0 - 0 ENSG00000172348.14 protein_coding RCAN2 2 OTTHUMG00000014782.2 +52660 chr6 HAVANA gene 46492052 46532758 622.0 + 0 ENSG00000236466.1 antisense AL359633.2 2 OTTHUMG00000014783.1 +52661 chr6 HAVANA gene 46549580 46652830 3111.0 - 0 ENSG00000146233.7 protein_coding CYP39A1 2 OTTHUMG00000014785.1 +52662 chr6 HAVANA gene 46652915 46678193 3288.0 + 0 ENSG00000153291.15 protein_coding SLC25A27 2 OTTHUMG00000014786.6 +52663 chr6 HAVANA gene 46670444 46688165 575.0 - 0 ENSG00000242973.6 antisense AL591242.1 1 OTTHUMG00000014787.2 +52664 chr6 HAVANA gene 46687875 46704319 9041.0 + 0 ENSG00000180113.15 protein_coding TDRD6 2 OTTHUMG00000014788.1 +52665 chr6 HAVANA gene 46704201 46735693 2026.0 - 0 ENSG00000146070.16 protein_coding PLA2G7 2 OTTHUMG00000014789.1 +52666 chr6 HAVANA gene 46746917 46759506 3692.0 + 0 ENSG00000230062.5 protein_coding ANKRD66 1 OTTHUMG00000014791.2 +52667 chr6 HAVANA gene 46758296 46761158 761.0 - 0 ENSG00000236164.1 lincRNA AL161618.1 1 OTTHUMG00000014792.1 +52668 chr6 HAVANA gene 46793390 46839782 2980.0 + 0 ENSG00000112818.9 protein_coding MEP1A 2 OTTHUMG00000014790.1 +52669 chr6 HAVANA gene 46903471 46909078 781.0 + 0 ENSG00000225730.1 antisense AL096772.1 2 OTTHUMG00000014794.1 +52670 chr6 HAVANA gene 46852512 46954943 6650.0 - 0 ENSG00000069122.18 protein_coding ADGRF5 2 OTTHUMG00000014793.2 +52671 chr6 HAVANA gene 46997703 47042363 12401.0 - 0 ENSG00000153292.15 protein_coding ADGRF1 2 OTTHUMG00000014795.2 +52672 chr6 HAVANA gene 47231532 47309905 3595.0 - 0 ENSG00000146072.6 protein_coding TNFRSF21 2 OTTHUMG00000014796.1 +52673 chr6 HAVANA gene 47368943 47369230 288.0 + 0 ENSG00000271328.1 processed_pseudogene B3GNTL1P2 1 OTTHUMG00000184538.1 pseudo_consens +52674 chr6 HAVANA gene 47477243 47477572 330.0 - 0 ENSG00000270761.1 lincRNA AL355353.1 2 OTTHUMG00000185189.1 +52675 chr6 ENSEMBL gene 47489067 47489170 104.0 + 0 ENSG00000199762.1 misc_RNA RF00019 3 +52676 chr6 HAVANA gene 47562622 47563018 397.0 + 0 ENSG00000216813.1 processed_pseudogene AL358178.1 1 OTTHUMG00000014798.1 pseudo_consens,overlapping_locus +52677 chr6 HAVANA gene 47477789 47627263 6751.0 + 0 ENSG00000198087.7 protein_coding CD2AP 2 OTTHUMG00000014799.2 ncRNA_host,overlapping_locus +52678 chr6 HAVANA gene 47656436 47697797 6395.0 + 0 ENSG00000164393.8 protein_coding ADGRF2 2 OTTHUMG00000046168.4 overlapping_locus +52679 chr6 ENSEMBL gene 47715283 47715601 319.0 + 0 ENSG00000252711.1 misc_RNA RN7SKP116 3 +52680 chr6 HAVANA gene 47685864 47722021 3391.0 + 0 ENSG00000153294.11 protein_coding ADGRF4 2 OTTHUMG00000014800.2 ncRNA_host,overlapping_locus +52681 chr6 HAVANA gene 47729827 47740741 197.0 - 0 ENSG00000226594.1 lincRNA AL356421.2 2 OTTHUMG00000014802.1 +52682 chr6 HAVANA gene 47752828 47753240 413.0 - 0 ENSG00000216616.1 processed_pseudogene AL356421.1 1 OTTHUMG00000014801.1 pseudo_consens +52683 chr6 ENSEMBL gene 47823390 47823550 161.0 + 0 ENSG00000200340.1 snRNA RNU1-105P 3 +52684 chr6 HAVANA gene 47781982 47832780 5084.0 + 0 ENSG00000124818.15 protein_coding OPN5 2 OTTHUMG00000014803.2 ncRNA_host +52685 chr6 HAVANA gene 47878028 48068689 5177.0 - 0 ENSG00000244694.7 protein_coding PTCHD4 2 OTTHUMG00000150404.2 +52686 chr6 HAVANA gene 48149203 48150005 803.0 - 0 ENSG00000226068.1 processed_pseudogene HNRNPA3P4 1 OTTHUMG00000014806.1 pseudo_consens +52687 chr6 HAVANA gene 48213604 48214794 1191.0 - 0 ENSG00000216835.3 processed_pseudogene RBMXP1 1 OTTHUMG00000014807.1 pseudo_consens +52688 chr6 HAVANA gene 48701491 48701872 382.0 - 0 ENSG00000278736.1 processed_pseudogene FO393412.1 2 OTTHUMG00000187628.2 +52689 chr6 HAVANA gene 48952070 48952781 712.0 - 0 ENSG00000271162.1 processed_pseudogene AL022099.1 1 OTTHUMG00000184591.1 pseudo_consens +52690 chr6 HAVANA gene 49077712 49078051 340.0 - 0 ENSG00000218337.1 processed_pseudogene AL589994.1 1 OTTHUMG00000014808.1 pseudo_consens +52691 chr6 HAVANA gene 49115537 49116115 579.0 + 0 ENSG00000274867.1 processed_pseudogene AL589994.2 2 OTTHUMG00000187629.1 +52692 chr6 HAVANA gene 49273600 49273794 195.0 + 0 ENSG00000217631.1 processed_pseudogene FO393413.1 1 OTTHUMG00000014810.1 pseudo_consens +52693 chr6 ENSEMBL gene 49344800 49344861 62.0 - 0 ENSG00000252457.1 snRNA RNU7-65P 3 +52694 chr6 HAVANA gene 49358185 49360420 1331.0 - 0 ENSG00000277043.1 processed_pseudogene EEF1A1P42 1 OTTHUMG00000014809.2 pseudo_consens +52695 chr6 HAVANA gene 49430360 49463191 3749.0 - 0 ENSG00000146085.7 protein_coding MUT 2 OTTHUMG00000014814.1 +52696 chr6 HAVANA gene 49463378 49493107 1733.0 + 0 ENSG00000031691.6 protein_coding CENPQ 2 OTTHUMG00000014815.2 +52697 chr6 HAVANA gene 49499958 49527047 1124.0 + 0 ENSG00000203972.9 protein_coding GLYATL3 2 OTTHUMG00000014818.4 +52698 chr6 HAVANA gene 49550646 49561907 2940.0 + 0 ENSG00000197261.11 protein_coding C6orf141 1 OTTHUMG00000014820.6 +52699 chr6 HAVANA gene 49565924 49580166 1173.0 - 0 ENSG00000216998.1 unitary_pseudogene CYP2AC1P 2 OTTHUMG00000014821.1 +52700 chr6 HAVANA gene 49605158 49636884 2691.0 - 0 ENSG00000112077.16 protein_coding RHAG 2 OTTHUMG00000016377.5 +52701 chr6 HAVANA gene 49692358 49713590 1518.0 - 0 ENSG00000124490.13 protein_coding CRISP2 2 OTTHUMG00000014822.2 +52702 chr6 HAVANA gene 49721931 49724007 2077.0 + 0 ENSG00000279127.1 TEC AL121950.1 2 OTTHUMG00000175918.1 +52703 chr6 HAVANA gene 49727384 49744437 2247.0 - 0 ENSG00000096006.11 protein_coding CRISP3 2 OTTHUMG00000014823.3 +52704 chr6 HAVANA gene 49785651 49787307 1657.0 - 0 ENSG00000170950.5 protein_coding PGK2 2 OTTHUMG00000014824.3 retrogene +52705 chr6 HAVANA gene 49817430 49820442 377.0 + 0 ENSG00000235122.3 antisense AL121974.1 2 OTTHUMG00000014826.2 +52706 chr6 HAVANA gene 49823712 49824782 400.0 - 0 ENSG00000226707.1 lincRNA AL359458.1 2 OTTHUMG00000014828.1 +52707 chr6 HAVANA gene 49834257 49877096 2000.0 - 0 ENSG00000124812.14 protein_coding CRISP1 2 OTTHUMG00000014827.2 +52708 chr6 HAVANA gene 49946021 49950265 609.0 - 0 ENSG00000214643.6 protein_coding DEFB133 2 OTTHUMG00000187384.3 reference_genome_error +52709 chr6 HAVANA gene 49960249 49964105 253.0 - 0 ENSG00000177684.3 protein_coding DEFB114 2 OTTHUMG00000160209.1 +52710 chr6 HAVANA gene 49968677 49969625 249.0 - 0 ENSG00000214642.1 protein_coding DEFB113 2 OTTHUMG00000160210.2 +52711 chr6 HAVANA gene 50009138 50021981 518.0 - 0 ENSG00000203970.3 protein_coding DEFB110 2 OTTHUMG00000160208.2 +52712 chr6 HAVANA gene 50043575 50048651 342.0 - 0 ENSG00000180872.4 protein_coding DEFB112 2 OTTHUMG00000160215.2 +52713 chr6 HAVANA gene 50093610 50181007 1490.0 + 0 ENSG00000226733.3 lincRNA AL138826.1 2 OTTHUMG00000014829.3 +52714 chr6 HAVANA gene 50514035 50521104 285.0 + 0 ENSG00000233470.1 lincRNA AL360175.1 1 OTTHUMG00000014830.1 +52715 chr6 HAVANA gene 50587607 50637205 826.0 - 0 ENSG00000230472.5 lincRNA AL135908.1 2 OTTHUMG00000014831.1 +52716 chr6 HAVANA gene 50713828 50772988 1856.0 + 0 ENSG00000008197.4 protein_coding TFAP2D 2 OTTHUMG00000014832.1 +52717 chr6 HAVANA gene 50818723 50847613 6149.0 + 0 ENSG00000008196.12 protein_coding TFAP2B 2 OTTHUMG00000014836.4 +52718 chr6 HAVANA gene 50857255 50857662 408.0 - 0 ENSG00000060303.5 processed_pseudogene RPS17P5 1 OTTHUMG00000014833.3 pseudo_consens +52719 chr6 HAVANA gene 50897615 50898225 611.0 - 0 ENSG00000216913.2 processed_pseudogene AL049693.1 1 OTTHUMG00000014834.2 pseudo_consens +52720 chr6 HAVANA gene 50912712 50913256 545.0 - 0 ENSG00000230204.1 processed_pseudogene FTH1P5 1 OTTHUMG00000014835.1 pseudo_consens +52721 chr6 HAVANA gene 51385282 51385849 568.0 - 0 ENSG00000270306.1 processed_pseudogene AL158050.2 1 OTTHUMG00000184589.1 pseudo_consens +52722 chr6 HAVANA gene 51410081 51410537 457.0 - 0 ENSG00000232702.3 processed_pseudogene AL158050.1 1 OTTHUMG00000014837.1 pseudo_consens +52723 chr6 ENSEMBL gene 51464690 51464765 76.0 + 0 ENSG00000212532.1 snoRNA RF00572 3 +52724 chr6 HAVANA gene 51537155 51537543 389.0 - 0 ENSG00000214641.3 processed_pseudogene AL445529.1 1 OTTHUMG00000014838.2 pseudo_consens +52725 chr6 HAVANA gene 51599723 51623428 2211.0 + 0 ENSG00000228689.8 antisense AL355997.1 2 OTTHUMG00000014839.6 +52726 chr6 ENSEMBL gene 51975673 51975959 287.0 + 0 ENSG00000240641.3 misc_RNA RN7SL580P 3 +52727 chr6 HAVANA gene 51615300 52087625 17454.0 - 0 ENSG00000170927.14 protein_coding PKHD1 2 OTTHUMG00000014841.1 +52728 chr6 ENSEMBL gene 52144349 52144434 86.0 + 0 ENSG00000207604.3 miRNA MIR206 3 +52729 chr6 ENSEMBL gene 52148923 52149041 119.0 + 0 ENSG00000199080.1 miRNA MIR133B 3 +52730 chr6 HAVANA gene 52146814 52151119 462.0 - 0 ENSG00000225613.2 lincRNA LINCMD1 2 OTTHUMG00000014842.1 +52731 chr6 HAVANA gene 52186375 52190638 1871.0 + 0 ENSG00000112115.6 protein_coding IL17A 2 OTTHUMG00000014840.2 +52732 chr6 HAVANA gene 52236681 52244537 1067.0 - 0 ENSG00000112116.9 protein_coding IL17F 2 OTTHUMG00000014845.3 +52733 chr6 HAVANA gene 52246460 52247362 903.0 + 0 ENSG00000218363.1 processed_pseudogene SLC25A20P1 1 OTTHUMG00000014843.1 pseudo_consens +52734 chr6 HAVANA gene 52264009 52284881 3650.0 - 0 ENSG00000112118.18 protein_coding MCM3 1 OTTHUMG00000014844.4 +52735 chr6 HAVANA gene 52361421 52407777 5057.0 + 0 ENSG00000170915.8 protein_coding PAQR8 2 OTTHUMG00000014846.3 retrogene +52736 chr6 HAVANA gene 52362123 52529886 22736.0 + 0 ENSG00000096093.15 protein_coding EFHC1 2 OTTHUMG00000014848.13 +52737 chr6 HAVANA gene 52497402 52576915 6908.0 - 0 ENSG00000065308.4 protein_coding TRAM2 2 OTTHUMG00000014850.1 +52738 chr6 HAVANA gene 52577307 52583993 2546.0 + 0 ENSG00000225791.6 lincRNA TRAM2-AS1 2 OTTHUMG00000014849.4 +52739 chr6 HAVANA gene 52657373 52657651 279.0 + 0 ENSG00000270382.1 processed_pseudogene AL109918.2 1 OTTHUMG00000184537.1 pseudo_consens +52740 chr6 HAVANA gene 52664366 52669155 3821.0 + 0 ENSG00000216775.3 transcribed_unprocessed_pseudogene AL109918.1 2 OTTHUMG00000014854.3 +52741 chr6 HAVANA gene 52671109 52686588 992.0 + 0 ENSG00000096092.5 protein_coding TMEM14A 2 OTTHUMG00000014856.1 +52742 chr6 HAVANA gene 52688661 52688998 338.0 + 0 ENSG00000271227.1 processed_pseudogene AL109918.3 2 OTTHUMG00000184535.1 +52743 chr6 HAVANA gene 52687930 52703825 637.0 - 0 ENSG00000220377.1 unprocessed_pseudogene GSTA8P 2 OTTHUMG00000014853.1 +52744 chr6 HAVANA gene 52739590 52744656 448.0 - 0 ENSG00000237674.1 unprocessed_pseudogene GSTA7P 2 OTTHUMG00000014855.1 +52745 chr6 HAVANA gene 52750089 52763569 1313.0 - 0 ENSG00000244067.2 protein_coding GSTA2 2 OTTHUMG00000016263.2 +52746 chr6 HAVANA gene 52765280 52778347 508.0 - 0 ENSG00000217228.1 unprocessed_pseudogene GSTA12P 2 OTTHUMG00000014852.1 +52747 chr6 HAVANA gene 52791664 52803910 1019.0 - 0 ENSG00000243955.5 protein_coding GSTA1 2 OTTHUMG00000014861.1 +52748 chr6 HAVANA gene 52805613 52813460 582.0 - 0 ENSG00000223622.2 unprocessed_pseudogene GSTA6P 2 OTTHUMG00000014858.2 +52749 chr6 HAVANA gene 52831655 52846095 932.0 - 0 ENSG00000182793.11 protein_coding GSTA5 2 OTTHUMG00000014857.1 +52750 chr6 HAVANA gene 52847910 52870329 669.0 - 0 ENSG00000230375.1 unprocessed_pseudogene GSTA11P 2 OTTHUMG00000014859.1 +52751 chr6 HAVANA gene 52873014 52879940 576.0 - 0 ENSG00000230845.1 unprocessed_pseudogene GSTA10P 2 OTTHUMG00000014860.1 +52752 chr6 HAVANA gene 52896639 52909685 902.0 - 0 ENSG00000174156.14 protein_coding GSTA3 2 OTTHUMG00000014865.3 +52753 chr6 HAVANA gene 52939726 52957521 889.0 - 0 ENSG00000243236.6 transcribed_unprocessed_pseudogene GSTA9P 2 OTTHUMG00000014863.2 +52754 chr6 HAVANA gene 52977948 52995378 2175.0 - 0 ENSG00000170899.10 protein_coding GSTA4 2 OTTHUMG00000014868.3 +52755 chr6 HAVANA gene 52995621 52995948 328.0 + 0 ENSG00000283293.1 snRNA RN7SK 2 OTTHUMG00000191875.1 +52756 chr6 ENSEMBL gene 52995620 52995950 331.0 + 0 ENSG00000202198.1 misc_RNA RF00100 3 +52757 chr6 HAVANA gene 53001279 53061802 6259.0 - 0 ENSG00000112144.15 protein_coding ICK 2 OTTHUMG00000014870.1 +52758 chr6 ENSEMBL gene 53090961 53091257 297.0 + 0 ENSG00000242865.3 misc_RNA RN7SL244P 3 +52759 chr6 HAVANA gene 53051991 53100873 8164.0 + 0 ENSG00000112146.16 protein_coding FBXO9 1 OTTHUMG00000014869.9 ncRNA_host +52760 chr6 HAVANA gene 53125644 53126146 503.0 - 0 ENSG00000261745.2 sense_overlapping AL512347.1 2 OTTHUMG00000175919.2 +52761 chr6 HAVANA gene 53126964 53148829 2765.0 - 0 ENSG00000137270.10 protein_coding GCM1 2 OTTHUMG00000014871.1 +52762 chr6 ENSEMBL gene 53153795 53153898 104.0 - 0 ENSG00000253026.1 snRNA RNU6-464P 3 +52763 chr6 HAVANA gene 53196720 53197159 440.0 - 0 ENSG00000219074.1 processed_pseudogene SOD1P1 1 OTTHUMG00000014872.1 pseudo_consens +52764 chr6 HAVANA gene 53206598 53208697 2100.0 - 0 ENSG00000218713.1 processed_pseudogene AL512378.1 1 OTTHUMG00000014873.1 pseudo_consens +52765 chr6 ENSEMBL gene 53219261 53219424 164.0 + 0 ENSG00000206908.1 snRNA RNU1-136P 3 +52766 chr6 HAVANA gene 53235621 53236297 677.0 - 0 ENSG00000219163.2 processed_pseudogene HMGB1P20 1 OTTHUMG00000014874.2 pseudo_consens +52767 chr6 ENSEMBL gene 53276993 53277071 79.0 + 0 ENSG00000264056.1 miRNA MIR5685 3 +52768 chr6 HAVANA gene 53336943 53337346 404.0 - 0 ENSG00000217527.1 transcribed_processed_pseudogene RPS16P5 1 OTTHUMG00000014875.1 pseudo_consens,overlapping_locus +52769 chr6 HAVANA gene 53267398 53349179 3813.0 - 0 ENSG00000012660.13 protein_coding ELOVL5 2 OTTHUMG00000016249.1 overlapping_locus +52770 chr6 HAVANA gene 53350158 53350705 548.0 + 0 ENSG00000271367.1 lincRNA AL034374.1 2 OTTHUMG00000185190.1 +52771 chr6 HAVANA gene 53354715 53355065 351.0 + 0 ENSG00000219863.5 processed_pseudogene RPL31P28 1 OTTHUMG00000016250.1 pseudo_consens +52772 chr6 HAVANA gene 53368670 53369009 340.0 + 0 ENSG00000218049.1 processed_pseudogene RPL31P33 1 OTTHUMG00000014877.1 pseudo_consens +52773 chr6 HAVANA gene 53378503 53378861 359.0 + 0 ENSG00000218261.1 processed_pseudogene AL591034.1 1 OTTHUMG00000014876.2 pseudo_consens +52774 chr6 HAVANA gene 53381519 53382203 685.0 + 0 ENSG00000271338.1 processed_pseudogene AL591034.2 1 OTTHUMG00000184572.1 pseudo_consens +52775 chr6 ENSEMBL gene 53415294 53415607 314.0 - 0 ENSG00000253010.1 misc_RNA RN7SKP256 3 +52776 chr6 HAVANA gene 53418452 53418737 286.0 - 0 ENSG00000271373.1 processed_pseudogene NANOGP3 1 OTTHUMG00000184573.2 pseudo_consens +52777 chr6 HAVANA gene 53503185 53506919 547.0 + 0 ENSG00000249379.1 antisense AL033397.2 2 OTTHUMG00000160263.1 +52778 chr6 HAVANA gene 53497341 53616970 8463.0 - 0 ENSG00000001084.12 protein_coding GCLC 1 OTTHUMG00000160220.13 overlapping_locus +52779 chr6 HAVANA gene 53561289 53617171 3994.0 - 0 ENSG00000231683.6 lincRNA AL033397.1 2 OTTHUMG00000014879.2 overlapping_locus +52780 chr6 HAVANA gene 53628380 53631394 566.0 + 0 ENSG00000235899.1 antisense LINC01564 1 OTTHUMG00000014881.1 +52781 chr6 HAVANA gene 53647901 53665708 5743.0 - 0 ENSG00000124743.5 protein_coding KLHL31 2 OTTHUMG00000014882.2 +52782 chr6 HAVANA gene 53740749 53794274 2374.0 - 0 ENSG00000227885.2 processed_transcript AL590652.1 1 OTTHUMG00000014883.3 +52783 chr6 HAVANA gene 53918974 53920788 456.0 - 0 ENSG00000271218.1 antisense AL033384.2 2 OTTHUMG00000185145.1 +52784 chr6 HAVANA gene 53794497 53924121 4897.0 + 0 ENSG00000137269.14 protein_coding LRRC1 2 OTTHUMG00000014885.4 +52785 chr6 HAVANA gene 53930022 53997667 3227.0 + 0 ENSG00000236740.6 lincRNA AL033384.1 2 OTTHUMG00000014887.3 overlapping_locus +52786 chr6 HAVANA gene 53998890 54007152 643.0 + 0 ENSG00000236996.1 sense_intronic MLIP-IT1 2 OTTHUMG00000014890.1 overlapping_locus +52787 chr6 HAVANA gene 54016479 54016777 299.0 - 0 ENSG00000218143.2 processed_pseudogene ERHP2 1 OTTHUMG00000014888.2 pseudo_consens +52788 chr6 HAVANA gene 53978549 54079726 4032.0 - 0 ENSG00000235050.6 antisense MLIP-AS1 2 OTTHUMG00000014889.5 +52789 chr6 HAVANA gene 53929982 54266280 7293.0 + 0 ENSG00000146147.14 protein_coding MLIP 1 OTTHUMG00000014891.8 overlapping_locus +52790 chr6 HAVANA gene 54365335 54369971 420.0 - 0 ENSG00000228231.2 antisense AL589946.1 1 OTTHUMG00000014892.2 +52791 chr6 HAVANA gene 54307859 54390152 2155.0 + 0 ENSG00000137251.15 protein_coding TINAG 2 OTTHUMG00000014893.1 +52792 chr6 HAVANA gene 54485169 54485850 682.0 - 0 ENSG00000213335.4 processed_pseudogene CLNS1AP1 1 OTTHUMG00000014894.2 pseudo_consens +52793 chr6 HAVANA gene 54602487 54603150 664.0 - 0 ENSG00000216347.1 processed_pseudogene RPL10P10 1 OTTHUMG00000014896.1 pseudo_consens +52794 chr6 HAVANA gene 54624605 54625488 884.0 + 0 ENSG00000220773.1 processed_pseudogene RPSAP44 1 OTTHUMG00000014895.1 pseudo_consens +52795 chr6 HAVANA gene 54770583 54771134 552.0 + 0 ENSG00000220635.2 processed_pseudogene KRASP1 1 OTTHUMG00000014897.2 pseudo_consens +52796 chr6 ENSEMBL gene 54786387 54786492 106.0 + 0 ENSG00000251946.1 snRNA RNU6-1023P 3 +52797 chr6 HAVANA gene 54840118 54840855 586.0 - 0 ENSG00000224984.1 antisense AL512363.1 2 OTTHUMG00000014898.1 +52798 chr6 HAVANA gene 54846771 54942022 3167.0 + 0 ENSG00000168143.8 protein_coding FAM83B 2 OTTHUMG00000014899.1 +52799 chr6 HAVANA gene 54943167 54945099 1933.0 + 0 ENSG00000261116.1 sense_overlapping AL049555.1 2 OTTHUMG00000175921.1 +52800 chr6 HAVANA gene 55106460 55282620 1964.0 + 0 ENSG00000137252.9 protein_coding HCRTR2 2 OTTHUMG00000016150.1 +52801 chr6 HAVANA gene 55327469 55402493 1911.0 + 0 ENSG00000187871.2 protein_coding GFRAL 2 OTTHUMG00000014900.2 +52802 chr6 HAVANA gene 55434369 55579214 4800.0 - 0 ENSG00000146151.13 protein_coding HMGCLL1 2 OTTHUMG00000014902.6 +52803 chr6 HAVANA gene 55680642 55681021 380.0 - 0 ENSG00000220725.1 processed_pseudogene AL590290.1 1 OTTHUMG00000014901.1 pseudo_consens +52804 chr6 HAVANA gene 55753645 55875564 3952.0 - 0 ENSG00000112175.7 protein_coding BMP5 2 OTTHUMG00000014903.1 +52805 chr6 HAVANA gene 55939790 55940624 835.0 - 0 ENSG00000214604.3 processed_pseudogene NPM1P36 1 OTTHUMG00000014904.1 pseudo_consens +52806 chr6 HAVANA gene 56276529 56276796 268.0 - 0 ENSG00000219095.1 processed_pseudogene DHFRP6 1 OTTHUMG00000014905.1 pseudo_consens,overlapping_locus +52807 chr6 HAVANA gene 56331788 56332117 330.0 - 0 ENSG00000227602.1 sense_intronic AL031779.1 2 OTTHUMG00000014906.1 overlapping_locus +52808 chr6 HAVANA gene 56056590 56394094 7078.0 - 0 ENSG00000124749.16 protein_coding COL21A1 2 OTTHUMG00000014907.5 overlapping_locus +52809 chr6 HAVANA gene 56431950 56433213 1264.0 - 0 ENSG00000220666.2 processed_pseudogene RCC2P7 1 OTTHUMG00000014908.2 pseudo_consens +52810 chr6 HAVANA gene 56844002 56864078 551.0 + 0 ENSG00000231441.1 antisense AL512422.1 2 OTTHUMG00000014909.1 +52811 chr6 HAVANA gene 56871191 56871743 553.0 + 0 ENSG00000216854.2 processed_pseudogene RPL17P26 1 OTTHUMG00000014910.2 pseudo_consens +52812 chr6 ENSEMBL gene 56945730 56945836 107.0 + 0 ENSG00000200224.2 snRNA RNU6-626P 3 +52813 chr6 HAVANA gene 56457987 56954628 42341.0 - 0 ENSG00000151914.19 protein_coding DST 1 OTTHUMG00000014913.19 +52814 chr6 HAVANA gene 56975606 56976062 457.0 - 0 ENSG00000219790.3 processed_pseudogene OSTCP6 1 OTTHUMG00000014911.3 pseudo_consens +52815 chr6 HAVANA gene 57004520 57004799 280.0 + 0 ENSG00000218980.2 processed_pseudogene FTH1P15 1 OTTHUMG00000014912.2 pseudo_consens,overlapping_locus +52816 chr6 HAVANA gene 56955126 57027342 5588.0 + 0 ENSG00000151917.17 protein_coding BEND6 2 OTTHUMG00000014914.7 overlapping_locus +52817 chr6 HAVANA gene 57029521 57029988 468.0 + 0 ENSG00000276576.1 processed_pseudogene MRPL30P1 1 OTTHUMG00000187630.1 pseudo_consens +52818 chr6 HAVANA gene 57046532 57055239 3109.0 + 0 ENSG00000168116.13 protein_coding KIAA1586 2 OTTHUMG00000014915.1 +52819 chr6 HAVANA gene 57086844 57170307 16416.0 + 0 ENSG00000112200.16 protein_coding ZNF451 2 OTTHUMG00000014916.10 +52820 chr6 HAVANA gene 57114894 57174236 4918.0 - 0 ENSG00000226803.8 antisense ZNF451-AS1 2 OTTHUMG00000014917.5 +52821 chr6 HAVANA gene 57172326 57189833 6651.0 + 0 ENSG00000112208.11 protein_coding BAG2 2 OTTHUMG00000014919.3 +52822 chr6 HAVANA gene 57186992 57222314 4926.0 - 0 ENSG00000112210.11 protein_coding RAB23 2 OTTHUMG00000014918.2 +52823 chr6 ENSEMBL gene 57390132 57390212 81.0 + 0 ENSG00000212017.2 miRNA MIR548U 3 +52824 chr6 HAVANA gene 57493855 57497691 345.0 + 0 ENSG00000266579.1 lincRNA FO680682.1 2 OTTHUMG00000178859.2 overlapping_locus +52825 chr6 HAVANA gene 57314805 57646849 4667.0 + 0 ENSG00000146143.17 protein_coding PRIM2 2 OTTHUMG00000016190.6 ncRNA_host,overlapping_locus +52826 chr6 HAVANA gene 57855891 57856468 578.0 - 0 ENSG00000272541.1 lincRNA AL021368.3 2 OTTHUMG00000185765.1 +52827 chr6 HAVANA gene 57902609 57903148 540.0 - 0 ENSG00000271761.1 lincRNA AL021368.1 2 OTTHUMG00000185766.1 +52828 chr6 HAVANA gene 57908560 57913911 5352.0 - 0 ENSG00000272316.1 lincRNA AL021368.2 2 OTTHUMG00000185767.1 +52829 chr6 HAVANA gene 57919784 57930291 672.0 - 0 ENSG00000239650.4 transcribed_unprocessed_pseudogene GUSBP4 1 OTTHUMG00000014924.1 pseudo_consens +52830 chr6 HAVANA gene 57937458 57939015 1558.0 + 0 ENSG00000218189.4 processed_pseudogene POM121L14P 1 OTTHUMG00000014926.2 pseudo_consens +52831 chr6 HAVANA gene 57919912 57961382 675.0 - 0 ENSG00000283352.1 processed_transcript LINC00680-GUSBP4 2 OTTHUMG00000191655.1 overlapping_locus +52832 chr6 HAVANA gene 57946074 57961501 2969.0 - 0 ENSG00000215190.9 transcribed_unprocessed_pseudogene LINC00680 2 OTTHUMG00000014928.2 +52833 chr6 HAVANA gene 57967687 57968661 975.0 - 0 ENSG00000214563.2 processed_pseudogene GAPDHP15 1 OTTHUMG00000014927.1 pseudo_consens +52834 chr6 HAVANA gene 58071720 58073134 1415.0 - 0 ENSG00000216687.2 processed_pseudogene AL390237.1 1 OTTHUMG00000014932.2 pseudo_consens +52835 chr6 HAVANA gene 58119741 58121029 1289.0 - 0 ENSG00000214561.3 processed_pseudogene RBBP4P4 1 OTTHUMG00000014931.1 pseudo_consens +52836 chr6 HAVANA gene 58386799 58386961 163.0 + 0 ENSG00000275046.1 processed_pseudogene AL603755.1 1 OTTHUMG00000187631.1 pseudo_consens +52837 chr6 HAVANA gene 57961438 58438364 6798.0 + 0 ENSG00000225096.2 lincRNA AL445250.1 2 OTTHUMG00000014930.2 +52838 chr6 HAVANA gene 60281444 60546660 3018.0 + 0 ENSG00000283453.2 transcribed_unprocessed_pseudogene AC244258.1 1 OTTHUMG00000191639.2 pseudo_consens +52839 chr6 HAVANA gene 60719222 60720196 975.0 - 0 ENSG00000277172.1 processed_pseudogene GAPDHP41 1 OTTHUMG00000188334.1 pseudo_consens +52840 chr6 HAVANA gene 60723148 60723898 315.0 + 0 ENSG00000275773.1 lincRNA AL590227.1 2 OTTHUMG00000188335.1 +52841 chr6 HAVANA gene 60826185 60826533 349.0 - 0 ENSG00000274844.1 processed_pseudogene AL512427.1 1 OTTHUMG00000188336.1 pseudo_consens +52842 chr6 HAVANA gene 60873360 60874642 1283.0 - 0 ENSG00000276290.1 processed_pseudogene RBBP4P3 1 OTTHUMG00000188337.1 pseudo_consens +52843 chr6 HAVANA gene 61240898 61241311 414.0 + 0 ENSG00000220030.1 processed_pseudogene AL356131.1 1 OTTHUMG00000014934.1 pseudo_consens +52844 chr6 HAVANA gene 61574328 61574402 75.0 + 0 ENSG00000255633.5 processed_pseudogene MTRNR2L9 2 OTTHUMG00000177605.3 +52845 chr6 HAVANA gene 61630233 61681049 673.0 - 0 ENSG00000250686.2 3prime_overlapping_ncRNA KHDRBS2-OT 2 OTTHUMG00000014935.2 overlapping_locus +52846 chr6 HAVANA gene 61679960 62286227 2332.0 - 0 ENSG00000112232.8 protein_coding KHDRBS2 2 OTTHUMG00000014936.2 overlapping_locus +52847 chr6 HAVANA gene 62460940 62461503 564.0 - 0 ENSG00000216859.1 processed_pseudogene DHFRP5 1 OTTHUMG00000014937.2 pseudo_consens +52848 chr6 HAVANA gene 62547427 62548272 392.0 + 0 ENSG00000217067.2 unprocessed_pseudogene AL355375.1 1 OTTHUMG00000014938.2 pseudo_consens +52849 chr6 HAVANA gene 62611153 62611327 175.0 - 0 ENSG00000262566.1 processed_pseudogene AL355375.2 2 OTTHUMG00000177323.1 +52850 chr6 HAVANA gene 63193072 63193630 559.0 - 0 ENSG00000217477.2 processed_pseudogene AL450346.1 1 OTTHUMG00000014939.2 pseudo_consens +52851 chr6 HAVANA gene 63211446 63213024 1579.0 + 0 ENSG00000198225.5 protein_coding FKBP1C 2 OTTHUMG00000014940.1 retrogene +52852 chr6 HAVANA gene 63227485 63227743 259.0 + 0 ENSG00000219940.2 processed_pseudogene SPTLC1P3 1 OTTHUMG00000014941.2 pseudo_consens +52853 chr6 HAVANA gene 63229087 63230110 1024.0 - 0 ENSG00000218520.5 processed_pseudogene AL450346.2 2 OTTHUMG00000014942.2 +52854 chr6 HAVANA gene 63275951 63319977 5823.0 - 0 ENSG00000146166.16 protein_coding LGSN 2 OTTHUMG00000014946.5 +52855 chr6 HAVANA gene 63392222 63392606 385.0 + 0 ENSG00000218617.1 processed_pseudogene AL121949.3 2 OTTHUMG00000014943.1 +52856 chr6 HAVANA gene 63395007 63397106 1548.0 - 0 ENSG00000218274.2 unprocessed_pseudogene AL121949.2 2 OTTHUMG00000014944.2 +52857 chr6 HAVANA gene 63440766 63443580 968.0 + 0 ENSG00000218048.2 unprocessed_pseudogene AL121949.1 1 OTTHUMG00000014945.2 pseudo_consens +52858 chr6 HAVANA gene 63480134 63481876 548.0 + 0 ENSG00000225121.2 unprocessed_pseudogene EEF1B2P5 1 OTTHUMG00000014947.2 pseudo_consens +52859 chr6 HAVANA gene 63548708 63549508 801.0 - 0 ENSG00000213312.3 processed_pseudogene RPL7AP34 1 OTTHUMG00000014948.1 pseudo_consens +52860 chr6 HAVANA gene 63571005 63572408 1404.0 - 0 ENSG00000266680.1 antisense AL135905.1 2 OTTHUMG00000179475.1 +52861 chr6 HAVANA gene 63521746 63583377 5281.0 + 0 ENSG00000112245.11 protein_coding PTP4A1 2 OTTHUMG00000014949.5 overlapping_locus +52862 chr6 HAVANA gene 63572012 63583587 5088.0 + 0 ENSG00000285976.1 protein_coding AL135905.2 2 OTTHUMG00000193382.1 overlapping_locus +52863 chr6 HAVANA gene 63612761 63612903 143.0 - 0 ENSG00000262651.1 processed_pseudogene AL513043.1 1 OTTHUMG00000177325.1 pseudo_consens +52864 chr6 HAVANA gene 63615827 63616361 535.0 - 0 ENSG00000213309.3 processed_pseudogene RPL9P18 1 OTTHUMG00000014950.1 pseudo_consens +52865 chr6 HAVANA gene 63635820 63779336 10378.0 + 0 ENSG00000118482.11 protein_coding PHF3 1 OTTHUMG00000014952.3 +52866 chr6 HAVANA gene 63797189 63798031 843.0 + 0 ENSG00000218813.1 processed_pseudogene AL354719.1 1 OTTHUMG00000014955.1 pseudo_consens +52867 chr6 HAVANA gene 63806836 63822642 1454.0 + 0 ENSG00000236345.1 antisense AL354719.2 2 OTTHUMG00000014954.1 +52868 chr6 HAVANA gene 63857441 63857769 329.0 + 0 ENSG00000219653.1 processed_pseudogene GCNT1P4 2 OTTHUMG00000014956.2 +52869 chr6 HAVANA gene 64377795 64412779 525.0 + 0 ENSG00000232120.1 antisense AL357375.1 2 OTTHUMG00000014957.1 +52870 chr6 HAVANA gene 64631205 64631682 478.0 - 0 ENSG00000217811.1 processed_pseudogene HNRNPDP2 1 OTTHUMG00000014959.1 pseudo_consens,overlapping_locus +52871 chr6 HAVANA gene 64728837 64733837 1041.0 - 0 ENSG00000243828.2 transcribed_processed_pseudogene AL355357.1 1 OTTHUMG00000014961.2 pseudo_consens,overlapping_locus +52872 chr6 HAVANA gene 65302522 65304957 2436.0 + 0 ENSG00000214558.4 processed_pseudogene AL365217.1 1 OTTHUMG00000014968.1 pseudo_consens +52873 chr6 HAVANA gene 63719980 65707225 17070.0 - 0 ENSG00000188107.14 protein_coding EYS 1 OTTHUMG00000014971.10 overlapping_locus +52874 chr6 HAVANA gene 65788417 65789287 871.0 + 0 ENSG00000220483.4 processed_pseudogene SLC25A51P1 1 OTTHUMG00000014975.1 pseudo_consens +52875 chr6 HAVANA gene 65836930 65838039 1110.0 - 0 ENSG00000233859.2 processed_pseudogene ADH5P4 2 OTTHUMG00000014976.3 +52876 chr6 HAVANA gene 66093431 66094909 1479.0 - 0 ENSG00000218890.1 processed_pseudogene NUFIP1P 2 OTTHUMG00000014977.1 +52877 chr6 HAVANA gene 66710242 66710827 586.0 - 0 ENSG00000270521.1 processed_pseudogene AL450336.1 1 OTTHUMG00000184588.2 pseudo_consens +52878 chr6 ENSEMBL gene 66728843 66728904 62.0 - 0 ENSG00000238949.1 snRNA RNU7-66P 3 +52879 chr6 ENSEMBL gene 67210408 67210480 73.0 - 0 ENSG00000212229.1 snoRNA RF00571 3 +52880 chr6 HAVANA gene 67456346 67457250 905.0 - 0 ENSG00000271111.1 processed_pseudogene AL365503.1 1 OTTHUMG00000184586.1 pseudo_consens +52881 chr6 ENSEMBL gene 67467231 67467308 78.0 - 0 ENSG00000251965.1 rRNA_pseudogene RNA5SP208 3 +52882 chr6 ENSEMBL gene 67546651 67546754 104.0 + 0 ENSG00000201015.1 snRNA RNU6-280P 3 +52883 chr6 ENSEMBL gene 67625356 67625464 109.0 + 0 ENSG00000206672.1 misc_RNA RF00019 3 +52884 chr6 HAVANA gene 67887646 67889339 1605.0 - 0 ENSG00000227706.3 lincRNA AL713998.1 2 OTTHUMG00000184002.1 +52885 chr6 HAVANA gene 67933485 67934682 1198.0 + 0 ENSG00000270509.1 processed_pseudogene AL713998.2 1 OTTHUMG00000184409.1 pseudo_consens +52886 chr6 HAVANA gene 68055351 68060502 492.0 + 0 ENSG00000223504.1 lincRNA AL646090.1 1 OTTHUMG00000014978.1 overlapping_locus +52887 chr6 HAVANA gene 68040290 68083574 1433.0 + 0 ENSG00000285838.1 lincRNA AL646090.2 2 OTTHUMG00000192720.1 overlapping_locus +52888 chr6 HAVANA gene 68226972 68329899 674.0 - 0 ENSG00000226497.1 lincRNA LINC02549 2 OTTHUMG00000014979.1 +52889 chr6 HAVANA gene 68598204 68598393 190.0 - 0 ENSG00000218834.1 processed_pseudogene AL606923.1 2 OTTHUMG00000014980.1 +52890 chr6 HAVANA gene 68628117 68635161 5924.0 - 0 ENSG00000230910.3 processed_transcript AL391807.1 1 OTTHUMG00000014981.3 +52891 chr6 HAVANA gene 68635367 69389511 6490.0 + 0 ENSG00000135298.13 protein_coding ADGRB3 1 OTTHUMG00000014982.3 +52892 chr6 HAVANA gene 69705287 69706160 874.0 - 0 ENSG00000219085.1 processed_pseudogene NPM1P37 1 OTTHUMG00000014983.1 pseudo_consens,overlapping_locus +52893 chr6 HAVANA gene 69745871 69746851 981.0 + 0 ENSG00000219881.1 processed_pseudogene GAPDHP42 1 OTTHUMG00000014984.1 pseudo_consens +52894 chr6 HAVANA gene 69675793 69867236 8791.0 - 0 ENSG00000168216.11 protein_coding LMBRD1 2 OTTHUMG00000014985.29 +52895 chr6 HAVANA gene 70098390 70098676 287.0 - 0 ENSG00000216365.2 processed_pseudogene RPL37P15 1 OTTHUMG00000014986.2 pseudo_consens +52896 chr6 HAVANA gene 69866571 70209976 8511.0 + 0 ENSG00000082293.12 protein_coding COL19A1 2 OTTHUMG00000014987.4 +52897 chr6 HAVANA gene 70222758 70242156 254.0 + 0 ENSG00000253809.1 antisense AL160262.1 2 OTTHUMG00000163723.1 +52898 chr6 HAVANA gene 70215061 70303083 7059.0 - 0 ENSG00000112280.16 protein_coding COL9A1 2 OTTHUMG00000014988.8 +52899 chr6 HAVANA gene 70394887 70399417 397.0 + 0 ENSG00000237643.1 lincRNA AL365226.2 2 OTTHUMG00000014989.1 +52900 chr6 HAVANA gene 70412828 70413950 349.0 - 0 ENSG00000224349.2 antisense AL365226.1 2 OTTHUMG00000014990.3 +52901 chr6 ENSEMBL gene 70513294 70513356 63.0 + 0 ENSG00000238386.1 snRNA RNU7-48P 3 +52902 chr6 HAVANA gene 70412941 70561174 10589.0 + 0 ENSG00000082269.16 protein_coding FAM135A 1 OTTHUMG00000014991.4 ncRNA_host +52903 chr6 HAVANA gene 70566917 70589569 1440.0 + 0 ENSG00000154079.5 protein_coding SDHAF4 2 OTTHUMG00000014992.1 +52904 chr6 HAVANA gene 70596438 70596980 543.0 + 0 ENSG00000271967.1 lincRNA AL583856.2 2 OTTHUMG00000185770.1 +52905 chr6 HAVANA gene 70608234 70609334 1101.0 - 0 ENSG00000232389.1 processed_pseudogene AL583856.1 1 OTTHUMG00000014993.1 pseudo_consens +52906 chr6 HAVANA gene 70663502 70664279 778.0 - 0 ENSG00000218870.1 processed_pseudogene SLC25A6P6 1 OTTHUMG00000014994.1 pseudo_consens +52907 chr6 HAVANA gene 70693839 70694619 781.0 + 0 ENSG00000262803.1 processed_pseudogene AL354943.1 2 OTTHUMG00000177328.2 overlapping_locus +52908 chr6 HAVANA gene 70734503 70734962 460.0 + 0 ENSG00000217767.2 processed_pseudogene NDUFAB1P1 1 OTTHUMG00000014995.2 pseudo_consens,overlapping_locus +52909 chr6 HAVANA gene 70667776 70862015 4161.0 + 0 ENSG00000112305.14 protein_coding SMAP1 2 OTTHUMG00000014996.1 overlapping_locus +52910 chr6 HAVANA gene 70856679 70957038 6565.0 - 0 ENSG00000112309.10 protein_coding B3GAT2 2 OTTHUMG00000014997.2 +52911 chr6 HAVANA gene 71075564 71076375 812.0 + 0 ENSG00000219669.1 processed_pseudogene BECN1P2 1 OTTHUMG00000014998.1 pseudo_consens +52912 chr6 ENSEMBL gene 71126893 71127105 213.0 - 0 ENSG00000221345.2 snoRNA RF00012 3 +52913 chr6 HAVANA gene 71165076 71165770 695.0 + 0 ENSG00000218350.1 processed_pseudogene LYPLA1P3 1 OTTHUMG00000014999.1 pseudo_consens +52914 chr6 ENSEMBL gene 71182612 71182718 107.0 + 0 ENSG00000207180.1 snRNA RNU6-411P 3 +52915 chr6 HAVANA gene 71251758 71252988 1231.0 + 0 ENSG00000276127.1 processed_pseudogene AL589935.2 1 OTTHUMG00000187633.1 pseudo_consens +52916 chr6 HAVANA gene 71288803 71308950 9051.0 + 0 ENSG00000119900.8 protein_coding OGFRL1 2 OTTHUMG00000015000.4 +52917 chr6 HAVANA gene 71221457 71328228 5169.0 - 0 ENSG00000232295.7 processed_transcript AL589935.1 2 OTTHUMG00000015003.5 overlapping_locus +52918 chr6 HAVANA gene 71328942 71329806 352.0 + 0 ENSG00000230597.1 lincRNA AL136164.1 2 OTTHUMG00000015002.1 +52919 chr6 HAVANA gene 71373253 71375387 2135.0 - 0 ENSG00000279312.1 TEC AL136164.4 2 OTTHUMG00000184052.1 overlapping_locus +52920 chr6 ENSEMBL gene 71376960 71377031 72.0 - 0 ENSG00000199094.3 miRNA MIR30C2 3 +52921 chr6 HAVANA gene 71386852 71390829 3978.0 - 0 ENSG00000279289.1 TEC AL136164.3 2 OTTHUMG00000184053.1 overlapping_locus +52922 chr6 ENSEMBL gene 71403551 71403621 71.0 - 0 ENSG00000207827.1 miRNA MIR30A 3 +52923 chr6 HAVANA gene 71295173 71417436 732.0 - 0 ENSG00000269966.1 lincRNA AL136164.2 2 OTTHUMG00000184051.1 ncRNA_host,overlapping_locus +52924 chr6 HAVANA gene 71344344 71420769 3443.0 - 0 ENSG00000233237.6 lincRNA LINC00472 2 OTTHUMG00000015006.3 ncRNA_host,overlapping_locus +52925 chr6 HAVANA gene 71450834 71458874 452.0 + 0 ENSG00000223765.2 lincRNA LINC01626 1 OTTHUMG00000015005.2 +52926 chr6 HAVANA gene 71532070 71534715 1959.0 + 0 ENSG00000285963.1 lincRNA AL035467.2 2 OTTHUMG00000192661.1 +52927 chr6 HAVANA gene 71550958 71551643 686.0 - 0 ENSG00000219575.1 processed_pseudogene AL035467.1 1 OTTHUMG00000015004.2 pseudo_consens +52928 chr6 HAVANA gene 71584721 71585906 1186.0 + 0 ENSG00000218014.1 processed_pseudogene KRT19P1 1 OTTHUMG00000015007.1 pseudo_consens +52929 chr6 ENSEMBL gene 71652474 71652611 138.0 - 0 ENSG00000202069.1 snRNA RNU4-66P 3 +52930 chr6 HAVANA gene 72316599 72317436 838.0 - 0 ENSG00000218732.1 processed_pseudogene AL035633.1 2 OTTHUMG00000015008.1 +52931 chr6 HAVANA gene 71886703 72403143 12788.0 + 0 ENSG00000079841.18 protein_coding RIMS1 1 OTTHUMG00000015009.12 +52932 chr6 HAVANA gene 72522641 72523238 598.0 + 0 ENSG00000217483.1 processed_pseudogene FO393414.2 1 OTTHUMG00000015011.1 pseudo_consens +52933 chr6 HAVANA gene 72598451 72599634 1184.0 - 0 ENSG00000181514.6 processed_pseudogene FO393414.1 1 OTTHUMG00000015012.3 pseudo_consens +52934 chr6 HAVANA gene 72614386 72622073 3938.0 - 0 ENSG00000285844.1 bidirectional_promoter_lncRNA FO393414.3 2 OTTHUMG00000193011.1 +52935 chr6 HAVANA gene 72630495 72678558 563.0 + 0 ENSG00000233844.1 sense_intronic KCNQ5-IT1 2 OTTHUMG00000015014.2 overlapping_locus +52936 chr6 ENSEMBL gene 72967687 72967753 67.0 - 0 ENSG00000266180.1 miRNA MIR4282 3 +52937 chr6 HAVANA gene 72986313 72987750 1438.0 + 0 ENSG00000232422.1 processed_pseudogene KNOP1P4 1 OTTHUMG00000015016.2 pseudo_consens,overlapping_locus +52938 chr6 HAVANA gene 73055097 73055857 761.0 + 0 ENSG00000220515.2 processed_pseudogene PGAM1P10 1 OTTHUMG00000015017.2 pseudo_consens,overlapping_locus +52939 chr6 HAVANA gene 73134803 73143514 1101.0 - 0 ENSG00000229154.1 antisense KCNQ5-AS1 2 OTTHUMG00000015018.2 +52940 chr6 HAVANA gene 73157517 73158139 623.0 - 0 ENSG00000234025.1 processed_pseudogene RBPMS2P1 1 OTTHUMG00000015019.3 pseudo_consens +52941 chr6 HAVANA gene 72621792 73198851 7570.0 + 0 ENSG00000185760.15 protein_coding KCNQ5 1 OTTHUMG00000015020.7 overlapping_locus +52942 chr6 HAVANA gene 73209083 73210080 508.0 - 0 ENSG00000251360.2 transcribed_unprocessed_pseudogene KHDC1P1 2 OTTHUMG00000132475.2 overlapping_locus +52943 chr6 HAVANA gene 73223544 73225770 953.0 - 0 ENSG00000256980.4 protein_coding KHDC1L 2 OTTHUMG00000132474.1 overlapping_locus +52944 chr6 HAVANA gene 73209746 73263196 1636.0 - 0 ENSG00000243501.5 protein_coding AL365232.1 2 OTTHUMG00000168294.2 overlapping_locus +52945 chr6 HAVANA gene 73290403 73291262 860.0 + 0 ENSG00000239626.1 processed_pseudogene RPSAP41 1 OTTHUMG00000086817.1 pseudo_consens,overlapping_locus +52946 chr6 HAVANA gene 73291962 73293277 1316.0 + 0 ENSG00000234882.1 processed_pseudogene EIF3EP1 1 OTTHUMG00000015029.2 pseudo_consens,overlapping_locus +52947 chr6 HAVANA gene 73263215 73301401 6660.0 + 0 ENSG00000229852.2 antisense AC019205.1 2 OTTHUMG00000047278.4 overlapping_locus +52948 chr6 HAVANA gene 73241314 73310365 3350.0 - 0 ENSG00000135314.12 protein_coding KHDC1 2 OTTHUMG00000015030.15 overlapping_locus +52949 chr6 HAVANA gene 73322837 73323450 614.0 + 0 ENSG00000223389.1 processed_pseudogene SDCBP2P1 1 OTTHUMG00000015027.2 pseudo_consens +52950 chr6 HAVANA gene 73327524 73329017 1168.0 + 0 ENSG00000226840.1 processed_pseudogene PAICSP3 1 OTTHUMG00000015026.2 pseudo_consens +52951 chr6 HAVANA gene 73353062 73354295 679.0 - 0 ENSG00000203909.3 protein_coding DPPA5 2 OTTHUMG00000015025.3 +52952 chr6 HAVANA gene 73362677 73364171 1018.0 + 0 ENSG00000203908.3 protein_coding KHDC3L 2 OTTHUMG00000015024.3 +52953 chr6 HAVANA gene 73373108 73373263 156.0 - 0 ENSG00000235174.1 processed_pseudogene RPL39P3 2 OTTHUMG00000015023.2 overlapping_locus +52954 chr6 HAVANA gene 73369704 73387717 463.0 + 0 ENSG00000231332.2 antisense OOEP-AS1 2 OTTHUMG00000015022.4 +52955 chr6 HAVANA gene 73391038 73391767 730.0 - 0 ENSG00000224221.1 processed_pseudogene RPS6P8 1 OTTHUMG00000015021.2 pseudo_consens,overlapping_locus +52956 chr6 HAVANA gene 73368555 73395133 1467.0 - 0 ENSG00000203907.9 protein_coding OOEP 1 OTTHUMG00000150057.4 overlapping_locus +52957 chr6 HAVANA gene 73394748 73417569 2807.0 + 0 ENSG00000080007.7 protein_coding DDX43 2 OTTHUMG00000015033.4 +52958 chr6 HAVANA gene 73413515 73452276 4155.0 - 0 ENSG00000164430.15 protein_coding CGAS 2 OTTHUMG00000015034.6 +52959 chr6 ENSEMBL gene 73464073 73464177 105.0 + 0 ENSG00000207023.1 snRNA RNU6-975P 3 +52960 chr6 ENSEMBL gene 73487590 73487877 288.0 - 0 ENSG00000271986.2 misc_RNA RN7SL827P 3 +52961 chr6 HAVANA gene 73492025 73492742 370.0 - 0 ENSG00000223821.1 antisense AL603910.1 2 OTTHUMG00000058065.1 +52962 chr6 HAVANA gene 73461578 73509236 12071.0 + 0 ENSG00000135297.15 protein_coding MTO1 2 OTTHUMG00000015032.16 ncRNA_host +52963 chr6 HAVANA gene 73515750 73523797 5948.0 - 0 ENSG00000156508.17 protein_coding EEF1A1 2 OTTHUMG00000015031.6 +52964 chr6 HAVANA gene 73526744 73526879 136.0 - 0 ENSG00000223967.1 processed_pseudogene AL603910.2 2 OTTHUMG00000015035.2 +52965 chr6 HAVANA gene 73523618 73570596 804.0 + 0 ENSG00000229862.5 antisense AL121972.1 2 OTTHUMG00000150059.2 +52966 chr6 HAVANA gene 73618346 73618597 252.0 + 0 ENSG00000218459.1 processed_pseudogene RPS27P15 1 OTTHUMG00000015037.1 pseudo_consens +52967 chr6 HAVANA gene 73593379 73654155 3604.0 - 0 ENSG00000119899.12 protein_coding SLC17A5 2 OTTHUMG00000015039.1 +52968 chr6 HAVANA gene 73693903 73696131 1973.0 - 0 ENSG00000231652.2 antisense AL590428.1 2 OTTHUMG00000015038.2 +52969 chr6 HAVANA gene 73695785 73828316 9563.0 + 0 ENSG00000156535.14 protein_coding CD109 2 OTTHUMG00000015040.5 +52970 chr6 HAVANA gene 73971346 73973115 1770.0 + 0 ENSG00000279790.1 TEC AL590552.1 2 OTTHUMG00000175922.1 +52971 chr6 HAVANA gene 74004520 74004812 293.0 - 0 ENSG00000217268.1 processed_pseudogene TXNP7 1 OTTHUMG00000015041.1 pseudo_consens +52972 chr6 HAVANA gene 74282266 74282660 395.0 + 0 ENSG00000217178.1 processed_pseudogene AL357563.1 1 OTTHUMG00000015042.1 pseudo_consens,overlapping_locus +52973 chr6 HAVANA gene 74610449 74610715 267.0 - 0 ENSG00000218483.1 processed_pseudogene AL356277.1 1 OTTHUMG00000015044.1 pseudo_consens,overlapping_locus +52974 chr6 HAVANA gene 74642384 74652002 441.0 + 0 ENSG00000224583.1 lincRNA AL356277.2 2 OTTHUMG00000015045.1 overlapping_locus +52975 chr6 HAVANA gene 74069451 74690727 669.0 + 0 ENSG00000223786.1 lincRNA AL357507.1 2 OTTHUMG00000015043.1 overlapping_locus +52976 chr6 HAVANA gene 74530248 74734279 1264.0 - 0 ENSG00000272243.5 lincRNA AL356277.3 2 OTTHUMG00000185194.2 overlapping_locus +52977 chr6 HAVANA gene 74849077 74850484 1408.0 - 0 ENSG00000219736.1 processed_pseudogene AL356473.1 1 OTTHUMG00000015047.1 pseudo_consens +52978 chr6 HAVANA gene 75084326 75206051 12481.0 - 0 ENSG00000111799.20 protein_coding COL12A1 1 OTTHUMG00000015051.7 +52979 chr6 HAVANA gene 75237675 75250323 1922.0 - 0 ENSG00000112695.11 protein_coding COX7A2 1 OTTHUMG00000015049.8 +52980 chr6 HAVANA gene 75252924 75284968 5123.0 - 0 ENSG00000112697.15 protein_coding TMEM30A 2 OTTHUMG00000015050.5 +52981 chr6 HAVANA gene 75285014 75297003 1519.0 + 0 ENSG00000225793.2 lincRNA AL080250.1 2 OTTHUMG00000015048.2 +52982 chr6 HAVANA gene 75319101 75319980 880.0 - 0 ENSG00000203489.3 processed_pseudogene HMGB1P39 1 OTTHUMG00000015052.1 pseudo_consens,overlapping_locus +52983 chr6 ENSEMBL gene 75398860 75399067 208.0 - 0 ENSG00000221332.2 snoRNA RF00012 3 +52984 chr6 HAVANA gene 75357214 75399300 2237.0 + 0 ENSG00000237174.7 antisense AL445465.1 2 OTTHUMG00000015054.4 +52985 chr6 ENSEMBL gene 75428407 75428473 67.0 + 0 ENSG00000263533.1 miRNA MIR4463 3 +52986 chr6 HAVANA gene 75454944 75458900 461.0 + 0 ENSG00000238156.1 lincRNA AL445465.2 2 OTTHUMG00000015055.2 +52987 chr6 HAVANA gene 75465123 75465570 448.0 + 0 ENSG00000217680.1 processed_pseudogene UBE2V1P15 1 OTTHUMG00000015053.1 pseudo_consens +52988 chr6 ENSEMBL gene 75473738 75473894 157.0 - 0 ENSG00000201291.1 snRNA RNU1-34P 3 +52989 chr6 HAVANA gene 75291859 75493738 8906.0 - 0 ENSG00000118407.14 protein_coding FILIP1 2 OTTHUMG00000015056.3 ncRNA_host,overlapping_locus +52990 chr6 HAVANA gene 75499705 75500136 432.0 + 0 ENSG00000219722.1 processed_pseudogene RPL26P20 1 OTTHUMG00000015057.1 pseudo_consens +52991 chr6 HAVANA gene 75586122 75586461 340.0 + 0 ENSG00000220730.2 processed_pseudogene AL356057.2 1 OTTHUMG00000015058.2 pseudo_consens +52992 chr6 ENSEMBL gene 75593055 75593145 91.0 + 0 ENSG00000252137.1 snRNA RNU6-1338P 3 +52993 chr6 HAVANA gene 75610958 75611945 988.0 - 0 ENSG00000217488.2 transcribed_processed_pseudogene AL356057.1 1 OTTHUMG00000015059.2 pseudo_consens +52994 chr6 ENSEMBL gene 75644084 75644177 94.0 + 0 ENSG00000252498.1 snRNA RNU6-1016P 3 +52995 chr6 ENSEMBL gene 75654970 75655299 330.0 - 0 ENSG00000200091.1 misc_RNA RN7SKP163 3 +52996 chr6 HAVANA gene 75601509 75718278 11414.0 + 0 ENSG00000112701.17 protein_coding SENP6 2 OTTHUMG00000015060.4 ncRNA_host +52997 chr6 HAVANA gene 75744275 75744840 566.0 + 0 ENSG00000285401.1 processed_pseudogene AL109897.1 2 OTTHUMG00000192603.1 +52998 chr6 ENSEMBL gene 75768059 75768158 100.0 - 0 ENSG00000252156.1 snRNA RNU6-155P 3 +52999 chr6 ENSEMBL gene 75865239 75865335 97.0 - 0 ENSG00000223169.1 rRNA_pseudogene RNA5SP209 3 +53000 chr6 HAVANA gene 75749192 75919537 8785.0 + 0 ENSG00000196586.13 protein_coding MYO6 2 OTTHUMG00000015061.4 +53001 chr6 ENSEMBL gene 75928513 75928625 113.0 + 0 ENSG00000200040.1 misc_RNA RF00019 3 +53002 chr6 HAVANA gene 75921115 76072678 3801.0 - 0 ENSG00000112706.11 protein_coding IMPG1 2 OTTHUMG00000015063.1 +53003 chr6 ENSEMBL gene 76092834 76092940 107.0 + 0 ENSG00000222652.1 snRNA RNU6-248P 3 +53004 chr6 ENSEMBL gene 76446988 76447089 102.0 - 0 ENSG00000238697.1 snRNA RNU6-261P 3 +53005 chr6 ENSEMBL gene 76557653 76557754 102.0 - 0 ENSG00000272445.1 snRNA RNU6-84P 3 +53006 chr6 HAVANA gene 76561328 76562590 627.0 + 0 ENSG00000280511.1 lincRNA AL591030.1 2 OTTHUMG00000189754.1 +53007 chr6 HAVANA gene 76522451 76593623 570.0 - 0 ENSG00000236635.2 lincRNA LINC02540 2 OTTHUMG00000015064.2 ncRNA_host +53008 chr6 HAVANA gene 76660486 76662770 2285.0 + 0 ENSG00000231762.1 processed_pseudogene AL590426.1 1 OTTHUMG00000015065.1 pseudo_consens +53009 chr6 HAVANA gene 76774983 76775860 786.0 + 0 ENSG00000271945.1 lincRNA AL590426.2 2 OTTHUMG00000185778.1 +53010 chr6 HAVANA gene 77343557 77343654 98.0 + 0 ENSG00000276064.1 processed_pseudogene AL365222.1 1 OTTHUMG00000187634.1 pseudo_consens +53011 chr6 HAVANA gene 77461753 77463773 2021.0 - 0 ENSG00000135312.6 protein_coding HTR1B 2 OTTHUMG00000015066.2 retrogene +53012 chr6 HAVANA gene 77496119 77496671 553.0 + 0 ENSG00000219253.1 processed_pseudogene RPS6P7 1 OTTHUMG00000015067.1 pseudo_consens +53013 chr6 HAVANA gene 77650274 77927028 5290.0 + 0 ENSG00000269964.3 protein_coding MEI4 2 OTTHUMG00000153472.4 +53014 chr6 HAVANA gene 78604467 78606036 387.0 - 0 ENSG00000230309.1 lincRNA AL121718.1 1 OTTHUMG00000015068.1 +53015 chr6 HAVANA gene 78809715 78813303 2632.0 - 0 ENSG00000229495.1 lincRNA AL450327.1 2 OTTHUMG00000015069.1 +53016 chr6 HAVANA gene 78867472 78946440 7542.0 + 0 ENSG00000146243.13 protein_coding IRAK1BP1 2 OTTHUMG00000015070.2 +53017 chr6 HAVANA gene 79067692 79068138 447.0 - 0 ENSG00000217512.1 processed_pseudogene AL356776.1 1 OTTHUMG00000015072.1 pseudo_consens,overlapping_locus +53018 chr6 HAVANA gene 78935867 79078236 13252.0 - 0 ENSG00000146247.13 protein_coding PHIP 2 OTTHUMG00000015071.2 overlapping_locus +53019 chr6 HAVANA gene 79201245 79234738 1014.0 - 0 ENSG00000118418.14 protein_coding HMGN3 2 OTTHUMG00000015073.1 +53020 chr6 HAVANA gene 79233718 79236797 2946.0 + 0 ENSG00000270362.1 antisense HMGN3-AS1 2 OTTHUMG00000185118.1 +53021 chr6 HAVANA gene 79278105 79278427 323.0 - 0 ENSG00000220154.2 processed_pseudogene AL355796.1 1 OTTHUMG00000015074.2 pseudo_consens +53022 chr6 ENSEMBL gene 79301963 79302066 104.0 - 0 ENSG00000201464.1 misc_RNA RF00019 3 +53023 chr6 HAVANA gene 79326568 79327207 640.0 - 0 ENSG00000217786.1 processed_pseudogene AL355379.1 1 OTTHUMG00000015076.1 pseudo_consens +53024 chr6 HAVANA gene 79354443 79354713 271.0 - 0 ENSG00000218029.3 processed_pseudogene AL078601.1 2 OTTHUMG00000015078.1 +53025 chr6 HAVANA gene 79406240 79406774 535.0 - 0 ENSG00000262048.1 processed_pseudogene AL078601.3 1 OTTHUMG00000177330.1 pseudo_consens +53026 chr6 HAVANA gene 79420297 79421305 474.0 + 0 ENSG00000231533.1 lincRNA AL078601.2 2 OTTHUMG00000015079.1 +53027 chr6 HAVANA gene 79436908 79437167 260.0 - 0 ENSG00000218748.1 processed_pseudogene DBIP1 1 OTTHUMG00000015077.1 pseudo_consens +53028 chr6 HAVANA gene 79484991 79537458 5964.0 - 0 ENSG00000135338.13 protein_coding LCA5 2 OTTHUMG00000015080.5 +53029 chr6 HAVANA gene 79552794 79553160 367.0 + 0 ENSG00000261970.1 processed_pseudogene AL391840.1 1 OTTHUMG00000177331.1 pseudo_consens +53030 chr6 HAVANA gene 79561132 79561602 471.0 + 0 ENSG00000272137.1 lincRNA AL451064.1 2 OTTHUMG00000185791.1 +53031 chr6 HAVANA gene 79573877 79575530 1654.0 + 0 ENSG00000279659.1 TEC AL451064.2 2 OTTHUMG00000175923.1 +53032 chr6 HAVANA gene 79631283 79703659 4653.0 + 0 ENSG00000198478.7 protein_coding SH3BGRL2 2 OTTHUMG00000015081.2 +53033 chr6 HAVANA gene 79803583 79807225 481.0 - 0 ENSG00000235357.1 lincRNA LINC01621 2 OTTHUMG00000015082.1 +53034 chr6 HAVANA gene 79854684 79855632 949.0 + 0 ENSG00000220918.1 processed_pseudogene AL132875.1 1 OTTHUMG00000015083.2 pseudo_consens +53035 chr6 HAVANA gene 79868402 79870483 1283.0 + 0 ENSG00000285586.1 lincRNA AL132875.3 2 OTTHUMG00000192674.1 +53036 chr6 HAVANA gene 79871873 79874610 325.0 + 0 ENSG00000233835.1 lincRNA AL132875.2 2 OTTHUMG00000015084.1 +53037 chr6 HAVANA gene 79914812 79947580 3042.0 - 0 ENSG00000118402.5 protein_coding ELOVL4 2 OTTHUMG00000015087.1 +53038 chr6 HAVANA gene 79953005 79954011 1007.0 - 0 ENSG00000218582.2 processed_pseudogene GAPDHP63 1 OTTHUMG00000015085.2 pseudo_consens +53039 chr6 HAVANA gene 79964215 79964519 305.0 + 0 ENSG00000220311.1 processed_pseudogene RPL35AP18 1 OTTHUMG00000015086.1 pseudo_consens +53040 chr6 HAVANA gene 80003887 80042527 4579.0 + 0 ENSG00000112742.9 protein_coding TTK 1 OTTHUMG00000015088.4 +53041 chr6 HAVANA gene 80064286 80070199 5914.0 - 0 ENSG00000218418.2 processed_pseudogene AL591135.1 1 OTTHUMG00000015089.2 pseudo_consens +53042 chr6 HAVANA gene 80077729 80078362 634.0 - 0 ENSG00000217377.1 processed_pseudogene AK4P5 1 OTTHUMG00000015090.1 pseudo_consens +53043 chr6 HAVANA gene 80106647 80346270 4071.0 + 0 ENSG00000083123.14 protein_coding BCKDHB 2 OTTHUMG00000016430.2 +53044 chr6 HAVANA gene 80355424 80356859 1436.0 + 0 ENSG00000272129.1 lincRNA AL359715.3 2 OTTHUMG00000185792.1 +53045 chr6 HAVANA gene 80374015 80374569 555.0 - 0 ENSG00000219547.1 processed_pseudogene RPL17P25 1 OTTHUMG00000015091.1 pseudo_consens +53046 chr6 HAVANA gene 80440730 80441172 443.0 + 0 ENSG00000279022.1 TEC AL359715.4 2 OTTHUMG00000175924.1 +53047 chr6 HAVANA gene 80443344 80465927 935.0 + 0 ENSG00000233967.6 lincRNA AL359715.1 2 OTTHUMG00000015092.2 +53048 chr6 HAVANA gene 80466958 80469080 2123.0 + 0 ENSG00000260645.2 lincRNA AL359715.2 2 OTTHUMG00000175925.2 +53049 chr6 HAVANA gene 80470071 80470428 358.0 - 0 ENSG00000219361.1 processed_pseudogene RPSAP72 1 OTTHUMG00000015093.1 pseudo_consens +53050 chr6 HAVANA gene 80499196 80499392 197.0 - 0 ENSG00000181705.2 processed_pseudogene AL596028.1 2 OTTHUMG00000015094.1 +53051 chr6 HAVANA gene 80555841 80557189 1349.0 - 0 ENSG00000216352.1 processed_pseudogene AL590824.1 1 OTTHUMG00000015095.1 pseudo_consens +53052 chr6 HAVANA gene 81527102 81534915 786.0 - 0 ENSG00000226089.2 sense_intronic AL122017.1 1 OTTHUMG00000015096.2 overlapping_locus +53053 chr6 HAVANA gene 81551686 81554092 2407.0 + 0 ENSG00000277797.1 lincRNA AL359693.1 2 OTTHUMG00000187096.1 +53054 chr6 ENSEMBL gene 81622200 81622319 120.0 + 0 ENSG00000212336.1 rRNA_pseudogene RNA5SP210 3 +53055 chr6 HAVANA gene 81724722 81736353 471.0 - 0 ENSG00000232031.1 sense_intronic AL078599.2 2 OTTHUMG00000015100.1 overlapping_locus +53056 chr6 HAVANA gene 81491439 81752774 6053.0 - 0 ENSG00000112773.15 protein_coding TENT5A 2 OTTHUMG00000015097.1 overlapping_locus +53057 chr6 ENSEMBL gene 81764024 81764156 133.0 + 0 ENSG00000206886.1 snoRNA RF00156 3 +53058 chr6 HAVANA gene 81764211 81764503 293.0 + 0 ENSG00000219702.1 processed_pseudogene AL078599.1 2 OTTHUMG00000015098.1 +53059 chr6 HAVANA gene 81813286 81814157 520.0 - 0 ENSG00000224995.1 lincRNA LINC01526 1 OTTHUMG00000015099.1 +53060 chr6 HAVANA gene 81845185 81933480 822.0 - 0 ENSG00000226453.1 lincRNA LINC02542 2 OTTHUMG00000015101.1 +53061 chr6 HAVANA gene 81969453 81969539 87.0 - 0 ENSG00000260574.1 lincRNA AL360157.1 2 OTTHUMG00000175926.1 +53062 chr6 ENSEMBL gene 82210338 82210440 103.0 - 0 ENSG00000223044.1 snRNA RNU6-130P 3 +53063 chr6 HAVANA gene 82169983 82247754 8722.0 - 0 ENSG00000005700.14 protein_coding IBTK 2 OTTHUMG00000015102.2 ncRNA_host +53064 chr6 HAVANA gene 82263996 82264974 979.0 - 0 ENSG00000220537.1 processed_pseudogene AL121977.1 1 OTTHUMG00000015104.1 pseudo_consens +53065 chr6 HAVANA gene 82363206 82370828 6904.0 + 0 ENSG00000146242.8 protein_coding TPBG 2 OTTHUMG00000015103.1 +53066 chr6 HAVANA gene 82924829 82925122 294.0 - 0 ENSG00000220091.2 processed_pseudogene LAP3P1 2 OTTHUMG00000015105.2 overlapping_locus +53067 chr6 HAVANA gene 82932601 82938677 480.0 + 0 ENSG00000227215.1 antisense AL355613.1 2 OTTHUMG00000015106.1 +53068 chr6 HAVANA gene 82892398 83065841 6394.0 - 0 ENSG00000118420.16 protein_coding UBE3D 2 OTTHUMG00000015108.7 overlapping_locus +53069 chr6 HAVANA gene 83067666 83171350 10045.0 + 0 ENSG00000083097.14 protein_coding DOP1A 2 OTTHUMG00000016365.4 +53070 chr6 HAVANA gene 83161150 83193936 7335.0 - 0 ENSG00000013375.15 protein_coding PGM3 1 OTTHUMG00000015110.7 +53071 chr6 HAVANA gene 83193379 83198932 3744.0 + 0 ENSG00000013392.7 protein_coding RWDD2A 2 OTTHUMG00000015109.2 +53072 chr6 HAVANA gene 83392416 83393409 994.0 + 0 ENSG00000219951.4 processed_pseudogene AL391416.1 1 OTTHUMG00000015112.2 pseudo_consens +53073 chr6 HAVANA gene 83210389 83431071 3371.0 - 0 ENSG00000065833.8 protein_coding ME1 2 OTTHUMG00000015111.2 +53074 chr6 HAVANA gene 83512538 83525704 2440.0 + 0 ENSG00000146250.6 protein_coding PRSS35 2 OTTHUMG00000015113.1 +53075 chr6 HAVANA gene 83552880 83709691 6651.0 - 0 ENSG00000065609.14 protein_coding SNAP91 2 OTTHUMG00000015114.10 +53076 chr6 HAVANA gene 83728055 83736525 351.0 + 0 ENSG00000237874.2 lincRNA AL136972.1 2 OTTHUMG00000015116.2 +53077 chr6 HAVANA gene 83853266 83857515 4172.0 + 0 ENSG00000203877.8 protein_coding RIPPLY2 2 OTTHUMG00000015117.2 +53078 chr6 HAVANA gene 83859643 83967424 9635.0 + 0 ENSG00000065615.13 protein_coding CYB5R4 2 OTTHUMG00000015118.5 +53079 chr6 HAVANA gene 83983728 84007323 835.0 + 0 ENSG00000228679.1 lincRNA AL034347.1 2 OTTHUMG00000015119.1 +53080 chr6 HAVANA gene 84019204 84026100 2300.0 + 0 ENSG00000230852.2 lincRNA AL161621.1 2 OTTHUMG00000015120.3 +53081 chr6 HAVANA gene 84033756 84090881 2153.0 + 0 ENSG00000135324.5 protein_coding MRAP2 2 OTTHUMG00000015121.1 +53082 chr6 HAVANA gene 84124241 84227635 5474.0 - 0 ENSG00000135315.11 protein_coding CEP162 2 OTTHUMG00000015123.2 +53083 chr6 HAVANA gene 84429584 84430802 1219.0 - 0 ENSG00000226309.1 processed_pseudogene SMARCE1P2 1 OTTHUMG00000015124.1 pseudo_consens,overlapping_locus +53084 chr6 HAVANA gene 84421028 84556152 741.0 - 0 ENSG00000231776.5 lincRNA LINC01611 2 OTTHUMG00000015125.1 overlapping_locus +53085 chr6 HAVANA gene 84689292 84689429 138.0 - 0 ENSG00000219604.1 processed_pseudogene AL590143.1 2 OTTHUMG00000015127.1 overlapping_locus +53086 chr6 HAVANA gene 84687712 84709578 2076.0 + 0 ENSG00000228290.6 antisense TBX18-AS1 2 OTTHUMG00000015128.4 +53087 chr6 HAVANA gene 84687351 84764519 8469.0 - 0 ENSG00000112837.16 protein_coding TBX18 2 OTTHUMG00000015129.4 overlapping_locus +53088 chr6 HAVANA gene 84966397 84966625 229.0 - 0 ENSG00000216523.1 processed_pseudogene AL109941.1 2 OTTHUMG00000015130.1 +53089 chr6 HAVANA gene 85155667 85167749 1002.0 + 0 ENSG00000220291.1 unprocessed_pseudogene AL139806.1 2 OTTHUMG00000015131.1 +53090 chr6 HAVANA gene 85257328 85257694 367.0 + 0 ENSG00000216902.3 processed_pseudogene AL122016.1 1 OTTHUMG00000015132.1 pseudo_consens +53091 chr6 HAVANA gene 85287789 85289007 1219.0 + 0 ENSG00000213211.2 processed_pseudogene KRT18P64 1 OTTHUMG00000015134.1 pseudo_consens,overlapping_locus +53092 chr6 HAVANA gene 85286076 85290849 1590.0 + 0 ENSG00000217060.1 unprocessed_pseudogene AL135903.1 1 OTTHUMG00000015133.1 pseudo_consens,overlapping_locus +53093 chr6 HAVANA gene 85387219 85390186 2513.0 - 0 ENSG00000234155.1 lincRNA LINC02535 2 OTTHUMG00000015137.1 +53094 chr6 HAVANA gene 85426657 85427125 469.0 - 0 ENSG00000216439.1 processed_pseudogene DUTP5 1 OTTHUMG00000015136.1 pseudo_consens +53095 chr6 HAVANA gene 85427453 85427966 514.0 - 0 ENSG00000214460.3 processed_pseudogene TPT1P6 1 OTTHUMG00000015135.1 pseudo_consens +53096 chr6 HAVANA gene 85449584 85495791 4533.0 + 0 ENSG00000135318.11 protein_coding NT5E 2 OTTHUMG00000015139.2 +53097 chr6 HAVANA gene 85498441 85499058 618.0 - 0 ENSG00000280232.1 TEC AL589666.2 2 OTTHUMG00000175927.1 +53098 chr6 HAVANA gene 85505496 85594156 7105.0 - 0 ENSG00000135317.12 protein_coding SNX14 2 OTTHUMG00000015140.6 overlapping_locus +53099 chr6 HAVANA gene 85557978 85615234 835.0 - 0 ENSG00000271793.1 protein_coding AL589666.1 2 OTTHUMG00000185329.1 overlapping_locus +53100 chr6 HAVANA gene 85607785 85643792 8205.0 - 0 ENSG00000135316.17 protein_coding SYNCRIP 2 OTTHUMG00000015141.4 overlapping_locus +53101 chr6 HAVANA gene 85659892 85660606 715.0 - 0 ENSG00000220563.1 processed_pseudogene PKMP3 1 OTTHUMG00000015143.1 pseudo_consens +53102 chr6 ENSEMBL gene 85677589 85677658 70.0 - 0 ENSG00000275072.1 snoRNA SNORD50B 3 +53103 chr6 HAVANA gene 85660950 85678748 2806.0 - 0 ENSG00000203875.11 processed_transcript SNHG5 2 OTTHUMG00000015144.6 ncRNA_host +53104 chr6 HAVANA gene 85731371 85732011 641.0 + 0 ENSG00000217334.1 processed_pseudogene AL355615.1 1 OTTHUMG00000015145.1 pseudo_consens +53105 chr6 HAVANA gene 85735744 85735921 178.0 - 0 ENSG00000198738.4 processed_pseudogene SMIM11P1 1 OTTHUMG00000015146.2 pseudo_consens +53106 chr6 ENSEMBL gene 85751581 85751753 173.0 + 0 ENSG00000222686.1 snRNA RNU4-72P 3 +53107 chr6 ENSEMBL gene 85777639 85777755 117.0 - 0 ENSG00000200427.1 misc_RNA RF00019 3 +53108 chr6 HAVANA gene 85868953 85869464 512.0 + 0 ENSG00000218766.1 processed_pseudogene AL450338.1 1 OTTHUMG00000015147.1 pseudo_consens +53109 chr6 ENSEMBL gene 85993021 85993159 139.0 - 0 ENSG00000202103.1 snRNA RNU4-12P 3 +53110 chr6 HAVANA gene 86086415 86087134 720.0 - 0 ENSG00000220069.1 processed_pseudogene RPL7P27 1 OTTHUMG00000015148.1 pseudo_consens +53111 chr6 HAVANA gene 86170447 86171018 572.0 - 0 ENSG00000217272.1 processed_pseudogene AL049545.1 1 OTTHUMG00000015149.1 pseudo_consens +53112 chr6 HAVANA gene 86214237 86214576 340.0 - 0 ENSG00000220831.4 processed_pseudogene NDUFA5P9 1 OTTHUMG00000015150.2 pseudo_consens +53113 chr6 HAVANA gene 86432244 86432669 426.0 + 0 ENSG00000219500.1 processed_pseudogene AL391417.1 1 OTTHUMG00000015151.1 pseudo_consens +53114 chr6 ENSEMBL gene 86435848 86436138 291.0 + 0 ENSG00000243124.3 misc_RNA RN7SL643P 3 +53115 chr6 HAVANA gene 86729708 86730108 401.0 - 0 ENSG00000218561.1 processed_pseudogene AL353133.1 1 OTTHUMG00000015152.2 pseudo_consens +53116 chr6 HAVANA gene 86768522 86768932 411.0 - 0 ENSG00000219190.1 processed_pseudogene AL353133.2 1 OTTHUMG00000015153.2 pseudo_consens +53117 chr6 HAVANA gene 86897118 86897421 304.0 + 0 ENSG00000217769.4 processed_pseudogene AL157777.1 1 OTTHUMG00000015156.1 pseudo_consens +53118 chr6 HAVANA gene 86897547 86897683 137.0 + 0 ENSG00000220240.1 unprocessed_pseudogene AL157777.2 1 OTTHUMG00000015159.1 pseudo_consens +53119 chr6 HAVANA gene 86970466 86971193 728.0 + 0 ENSG00000214457.3 processed_pseudogene RPL7P29 1 OTTHUMG00000015157.1 pseudo_consens,overlapping_locus +53120 chr6 HAVANA gene 87000045 87000291 247.0 - 0 ENSG00000217169.2 processed_pseudogene MTHFD2P2 1 OTTHUMG00000015158.3 pseudo_consens +53121 chr6 HAVANA gene 86937306 87016683 2052.0 + 0 ENSG00000168830.7 protein_coding HTR1E 2 OTTHUMG00000015154.5 overlapping_locus +53122 chr6 HAVANA gene 87070156 87070461 306.0 - 0 ENSG00000217776.1 processed_pseudogene AL138827.1 1 OTTHUMG00000015160.1 pseudo_consens +53123 chr6 ENSEMBL gene 87083233 87083536 304.0 + 0 ENSG00000252697.1 misc_RNA RN7SKP209 3 +53124 chr6 HAVANA gene 87085498 87095406 2284.0 - 0 ENSG00000135346.8 protein_coding CGA 2 OTTHUMG00000015161.4 +53125 chr6 HAVANA gene 87121693 87122688 996.0 - 0 ENSG00000215477.2 processed_pseudogene RCN1P1 1 OTTHUMG00000015162.1 pseudo_consens +53126 chr6 HAVANA gene 87151159 87155285 4127.0 - 0 ENSG00000272008.1 antisense AL139274.2 2 OTTHUMG00000185794.1 +53127 chr6 HAVANA gene 87173368 87174303 936.0 - 0 ENSG00000218313.1 processed_pseudogene AL139274.1 1 OTTHUMG00000015163.2 pseudo_consens +53128 chr6 HAVANA gene 87152833 87264196 13128.0 + 0 ENSG00000188994.12 protein_coding ZNF292 1 OTTHUMG00000015164.6 +53129 chr6 HAVANA gene 87298772 87300447 1676.0 + 0 ENSG00000216990.2 processed_pseudogene HSPD1P10 1 OTTHUMG00000015167.2 pseudo_consens +53130 chr6 HAVANA gene 87282978 87329278 2729.0 - 0 ENSG00000164411.11 protein_coding GJB7 2 OTTHUMG00000015166.5 +53131 chr6 HAVANA gene 87356831 87358605 1775.0 + 0 ENSG00000279616.1 TEC AL096817.1 2 OTTHUMG00000186244.1 overlapping_locus +53132 chr6 HAVANA gene 87344849 87365463 2884.0 + 0 ENSG00000203872.6 protein_coding C6orf163 1 OTTHUMG00000015169.3 overlapping_locus +53133 chr6 HAVANA gene 87322583 87399749 8749.0 + 0 ENSG00000111850.10 protein_coding SMIM8 1 OTTHUMG00000015168.6 overlapping_locus +53134 chr6 HAVANA gene 87425795 87426088 294.0 - 0 ENSG00000216324.1 processed_pseudogene AL049697.2 2 OTTHUMG00000015174.1 +53135 chr6 HAVANA gene 87441165 87442146 982.0 - 0 ENSG00000218793.1 processed_pseudogene AL049697.3 1 OTTHUMG00000015175.1 pseudo_consens +53136 chr6 HAVANA gene 87444395 87445175 781.0 - 0 ENSG00000218698.1 processed_pseudogene ST13P16 1 OTTHUMG00000015176.1 pseudo_consens +53137 chr6 HAVANA gene 87407983 87464465 3613.0 + 0 ENSG00000272514.5 protein_coding CFAP206 2 OTTHUMG00000015173.3 overlapping_locus +53138 chr6 ENSEMBL gene 87488445 87488552 108.0 + 0 ENSG00000206715.1 snRNA RNU6-444P 3 +53139 chr6 HAVANA gene 87408012 87511634 3530.0 + 0 ENSG00000213204.8 protein_coding AL049697.1 2 OTTHUMG00000185391.1 ncRNA_host,overlapping_locus +53140 chr6 HAVANA gene 87470623 87512336 1994.0 + 0 ENSG00000164414.17 protein_coding SLC35A1 2 OTTHUMG00000015177.1 ncRNA_host,overlapping_locus +53141 chr6 HAVANA gene 87514378 87590003 2545.0 - 0 ENSG00000146282.17 protein_coding RARS2 2 OTTHUMG00000015178.3 +53142 chr6 HAVANA gene 87590067 87667453 3689.0 + 0 ENSG00000135336.14 protein_coding ORC3 2 OTTHUMG00000015179.5 +53143 chr6 HAVANA gene 87675072 87702209 1999.0 - 0 ENSG00000135334.8 protein_coding AKIRIN2 2 OTTHUMG00000015180.2 +53144 chr6 ENSEMBL gene 87720915 87721018 104.0 + 0 ENSG00000238628.1 snoRNA RF01210 3 +53145 chr6 ENSEMBL gene 87826173 87826285 113.0 - 0 ENSG00000207131.1 misc_RNA RF00019 3 +53146 chr6 ENSEMBL gene 87845650 87845947 298.0 + 0 ENSG00000240997.3 misc_RNA RN7SL183P 3 +53147 chr6 HAVANA gene 87891424 87891869 446.0 + 0 ENSG00000271114.1 processed_pseudogene AL590392.1 1 OTTHUMG00000184532.1 pseudo_consens +53148 chr6 HAVANA gene 88047789 88066832 1710.0 + 0 ENSG00000118434.8 protein_coding SPACA1 2 OTTHUMG00000015183.1 +53149 chr6 HAVANA gene 88139864 88166359 6357.0 - 0 ENSG00000118432.12 protein_coding CNR1 2 OTTHUMG00000015184.5 +53150 chr6 HAVANA gene 88172261 88175762 3502.0 + 0 ENSG00000279565.1 TEC AL121835.2 2 OTTHUMG00000175928.1 +53151 chr6 HAVANA gene 88265158 88265511 354.0 + 0 ENSG00000220131.1 processed_pseudogene AL121835.1 1 OTTHUMG00000015185.1 pseudo_consens +53152 chr6 HAVANA gene 88275882 88276989 1108.0 - 0 ENSG00000220267.1 processed_pseudogene ACTBP8 1 OTTHUMG00000015186.1 pseudo_consens +53153 chr6 HAVANA gene 88177804 88421033 1687.0 - 0 ENSG00000234426.2 lincRNA AL139042.1 2 OTTHUMG00000015187.2 +53154 chr6 ENSEMBL gene 88714242 88714430 189.0 - 0 ENSG00000222145.1 snoRNA RF00045 3 +53155 chr6 HAVANA gene 88610272 88963721 4916.0 - 0 ENSG00000111880.15 protein_coding RNGTT 2 OTTHUMG00000015190.4 ncRNA_host +53156 chr6 HAVANA gene 88964527 88966587 2061.0 + 0 ENSG00000280277.1 TEC AL079342.3 2 OTTHUMG00000187097.1 +53157 chr6 HAVANA gene 89001548 89001814 267.0 + 0 ENSG00000220130.1 processed_pseudogene AL079342.1 2 OTTHUMG00000015189.1 +53158 chr6 HAVANA gene 89059628 89060109 482.0 + 0 ENSG00000220960.1 processed_pseudogene AL079342.2 1 OTTHUMG00000015188.1 pseudo_consens +53159 chr6 ENSEMBL gene 89063500 89063690 191.0 - 0 ENSG00000223001.1 snRNA RNU2-61P 3 +53160 chr6 HAVANA gene 89080164 89080667 504.0 - 0 ENSG00000271931.1 antisense AL353135.1 2 OTTHUMG00000185795.1 +53161 chr6 HAVANA gene 89080751 89085160 2992.0 + 0 ENSG00000146278.10 protein_coding PNRC1 1 OTTHUMG00000015191.2 +53162 chr6 ENSEMBL gene 89090946 89091242 297.0 + 0 ENSG00000264017.2 misc_RNA RN7SL336P 3 +53163 chr6 HAVANA gene 89095959 89118081 4548.0 - 0 ENSG00000154548.8 protein_coding SRSF12 2 OTTHUMG00000015192.2 +53164 chr6 HAVANA gene 89146050 89165565 4708.0 + 0 ENSG00000146281.5 protein_coding PM20D2 2 OTTHUMG00000015193.1 +53165 chr6 HAVANA gene 89177501 89231278 3778.0 - 0 ENSG00000146276.11 protein_coding GABRR1 2 OTTHUMG00000015195.2 +53166 chr6 HAVANA gene 89301783 89303114 1332.0 + 0 ENSG00000220418.1 processed_pseudogene TUBB3P1 1 OTTHUMG00000015197.1 pseudo_consens +53167 chr6 HAVANA gene 89257208 89315299 2230.0 - 0 ENSG00000111886.10 protein_coding GABRR2 2 OTTHUMG00000015198.3 +53168 chr6 HAVANA gene 89326625 89352848 4290.0 - 0 ENSG00000198833.6 protein_coding UBE2J1 2 OTTHUMG00000016337.2 +53169 chr6 HAVANA gene 89364636 89412270 5072.0 - 0 ENSG00000025039.14 protein_coding RRAGD 2 OTTHUMG00000015200.2 +53170 chr6 HAVANA gene 89422099 89423048 609.0 - 0 ENSG00000218965.1 processed_pseudogene NACAP7 1 OTTHUMG00000015201.1 pseudo_consens +53171 chr6 ENSEMBL gene 89478141 89478433 293.0 + 0 ENSG00000239316.3 misc_RNA RN7SL11P 3 +53172 chr6 HAVANA gene 89560875 89567044 1171.0 - 0 ENSG00000237027.1 antisense AL159174.1 2 OTTHUMG00000046174.1 +53173 chr6 HAVANA gene 89433170 89633834 8329.0 + 0 ENSG00000135299.16 protein_coding ANKRD6 1 OTTHUMG00000015202.6 ncRNA_host +53174 chr6 HAVANA gene 89568144 89638753 8679.0 - 0 ENSG00000083099.10 protein_coding LYRM2 1 OTTHUMG00000015203.2 +53175 chr6 HAVANA gene 89673469 89675783 472.0 + 0 ENSG00000228124.1 antisense AL096678.1 1 OTTHUMG00000015204.1 +53176 chr6 HAVANA gene 89797598 89797877 280.0 + 0 ENSG00000220871.1 processed_pseudogene DNAJC19P6 1 OTTHUMG00000015206.1 pseudo_consens +53177 chr6 HAVANA gene 89814709 89815463 755.0 + 0 ENSG00000217653.1 processed_pseudogene AL353692.1 1 OTTHUMG00000015207.1 pseudo_consens +53178 chr6 HAVANA gene 89642499 89819723 18602.0 - 0 ENSG00000112159.11 protein_coding MDN1 2 OTTHUMG00000015213.3 +53179 chr6 ENSEMBL gene 89841329 89841424 96.0 + 0 ENSG00000199630.1 misc_RNA RF00019 3 +53180 chr6 HAVANA gene 89829894 89874436 8171.0 + 0 ENSG00000118412.12 protein_coding CASP8AP2 2 OTTHUMG00000015212.7 ncRNA_host,reference_genome_error +53181 chr6 HAVANA gene 89876544 89876878 335.0 + 0 ENSG00000218300.1 processed_pseudogene RPL22P14 1 OTTHUMG00000015208.1 pseudo_consens +53182 chr6 HAVANA gene 89886156 89887848 1396.0 + 0 ENSG00000219240.2 processed_pseudogene AL353692.2 1 OTTHUMG00000015209.2 pseudo_consens +53183 chr6 ENSEMBL gene 89898283 89898392 110.0 - 0 ENSG00000252891.1 misc_RNA RF00019 3 +53184 chr6 HAVANA gene 89894469 89921760 2408.0 + 0 ENSG00000135355.4 protein_coding GJA10 2 OTTHUMG00000015210.2 +53185 chr6 HAVANA gene 89950116 89953186 935.0 + 0 ENSG00000226455.1 antisense AL121787.1 1 OTTHUMG00000015214.1 +53186 chr6 ENSEMBL gene 90001222 90001506 285.0 - 0 ENSG00000222078.1 misc_RNA RN7SKP110 3 +53187 chr6 HAVANA gene 90116700 90117105 406.0 - 0 ENSG00000218730.1 processed_pseudogene AL117342.1 1 OTTHUMG00000015215.1 pseudo_consens,overlapping_locus +53188 chr6 HAVANA gene 89926529 90296908 9786.0 - 0 ENSG00000112182.14 protein_coding BACH2 2 OTTHUMG00000015216.4 ncRNA_host,overlapping_locus +53189 chr6 ENSEMBL gene 90312742 90312833 92.0 + 0 ENSG00000266760.1 miRNA MIR4464 3 +53190 chr6 HAVANA gene 90320443 90362632 2086.0 + 0 ENSG00000260271.2 lincRNA AL132996.1 2 OTTHUMG00000175929.2 +53191 chr6 HAVANA gene 90513573 90587045 7227.0 - 0 ENSG00000135341.17 protein_coding MAP3K7 2 OTTHUMG00000015217.1 +53192 chr6 HAVANA gene 91390313 91393000 442.0 - 0 ENSG00000224605.1 lincRNA AL080284.1 2 OTTHUMG00000015218.1 +53193 chr6 ENSEMBL gene 91521660 91521737 78.0 + 0 ENSG00000263734.1 miRNA MIR4643 3 +53194 chr6 HAVANA gene 91629915 91690428 733.0 - 0 ENSG00000224944.1 lincRNA CASC6 2 OTTHUMG00000015221.1 +53195 chr6 HAVANA gene 91726810 91727070 261.0 + 0 ENSG00000262095.1 processed_pseudogene MTATP6P25 2 OTTHUMG00000177315.1 +53196 chr6 HAVANA gene 91727159 91727324 166.0 + 0 ENSG00000219087.2 processed_pseudogene MTND4LP19 2 OTTHUMG00000015220.2 +53197 chr6 HAVANA gene 91727282 91727505 224.0 - 0 ENSG00000220340.1 processed_pseudogene MTCO1P56 2 OTTHUMG00000015219.1 +53198 chr6 ENSEMBL gene 91739609 91739897 289.0 + 0 ENSG00000240961.3 misc_RNA RN7SL415P 3 +53199 chr6 HAVANA gene 91815843 91816428 586.0 - 0 ENSG00000219867.1 processed_pseudogene AL590635.1 1 OTTHUMG00000015222.1 pseudo_consens +53200 chr6 HAVANA gene 92013842 92014734 893.0 + 0 ENSG00000220553.1 processed_pseudogene RPL5P19 1 OTTHUMG00000015223.1 pseudo_consens +53201 chr6 ENSEMBL gene 92119423 92119633 211.0 + 0 ENSG00000200492.2 snoRNA RF00012 3 +53202 chr6 HAVANA gene 92002610 92180156 2720.0 - 0 ENSG00000285961.1 lincRNA AL590814.1 2 OTTHUMG00000192738.1 +53203 chr6 HAVANA gene 92387841 92388827 987.0 - 0 ENSG00000261038.1 lincRNA AL133457.1 2 OTTHUMG00000175930.1 +53204 chr6 HAVANA gene 92723003 92723829 593.0 - 0 ENSG00000220908.2 lincRNA LINC02531 1 OTTHUMG00000015224.1 +53205 chr6 ENSEMBL gene 92790453 92790665 213.0 + 0 ENSG00000221455.2 snoRNA RF00012 3 +53206 chr6 HAVANA gene 92887251 92888581 927.0 - 0 ENSG00000219387.2 processed_pseudogene ATF1P1 1 OTTHUMG00000015225.2 pseudo_consens +53207 chr6 HAVANA gene 93091976 93092760 785.0 - 0 ENSG00000213187.3 processed_pseudogene COPS5P1 1 OTTHUMG00000015226.1 pseudo_consens +53208 chr6 HAVANA gene 93070387 93103384 739.0 + 0 ENSG00000235099.1 lincRNA AL138731.1 2 OTTHUMG00000015227.1 +53209 chr6 HAVANA gene 93240020 93419547 7456.0 - 0 ENSG00000135333.13 protein_coding EPHA7 2 OTTHUMG00000015228.1 +53210 chr6 HAVANA gene 93811825 93813036 1212.0 + 0 ENSG00000280451.1 TEC AL356094.1 2 OTTHUMG00000175931.1 +53211 chr6 ENSEMBL gene 93879106 93879229 124.0 + 0 ENSG00000252249.1 snoRNA RF00425 3 +53212 chr6 HAVANA gene 93886900 93889410 484.0 + 0 ENSG00000229600.1 lincRNA AL391336.1 1 OTTHUMG00000015229.1 +53213 chr6 HAVANA gene 94163920 94194658 265.0 + 0 ENSG00000231143.1 lincRNA AL157378.1 2 OTTHUMG00000015230.1 +53214 chr6 HAVANA gene 94344737 94344962 226.0 + 0 ENSG00000220370.1 processed_pseudogene AL078595.1 2 OTTHUMG00000015232.1 +53215 chr6 HAVANA gene 94397664 94398829 1166.0 + 0 ENSG00000279403.1 TEC AL078595.3 2 OTTHUMG00000175932.1 +53216 chr6 HAVANA gene 94442030 94443809 1780.0 - 0 ENSG00000270484.1 processed_pseudogene AL078595.2 1 OTTHUMG00000184583.1 pseudo_consens +53217 chr6 HAVANA gene 94446740 94447179 440.0 - 0 ENSG00000216853.1 processed_pseudogene MTCYBP36 2 OTTHUMG00000015231.1 +53218 chr6 HAVANA gene 95504182 95504496 315.0 + 0 ENSG00000219627.1 processed_pseudogene CYCSP17 1 OTTHUMG00000015233.1 pseudo_consens +53219 chr6 HAVANA gene 95575183 95577450 2268.0 - 0 ENSG00000261366.1 antisense MANEA-DT 2 OTTHUMG00000175933.1 +53220 chr6 HAVANA gene 95577543 95609457 5187.0 + 0 ENSG00000172469.15 protein_coding MANEA 2 OTTHUMG00000016296.1 +53221 chr6 HAVANA gene 95630115 95632929 499.0 - 0 ENSG00000219549.1 processed_pseudogene AL607077.1 1 OTTHUMG00000015234.1 pseudo_consens +53222 chr6 HAVANA gene 95991107 95992349 1243.0 + 0 ENSG00000219941.1 processed_pseudogene KRT18P50 1 OTTHUMG00000015235.1 pseudo_consens +53223 chr6 HAVANA gene 96015984 96215612 13719.0 + 0 ENSG00000172461.10 protein_coding FUT9 2 OTTHUMG00000015236.2 +53224 chr6 ENSEMBL gene 96282567 96282863 297.0 + 0 ENSG00000242560.3 misc_RNA RN7SL797P 3 +53225 chr6 HAVANA gene 96358374 96521669 548.0 - 0 ENSG00000233797.1 antisense UFL1-AS1 2 OTTHUMG00000015237.1 +53226 chr6 HAVANA gene 96521595 96555276 4539.0 + 0 ENSG00000014123.9 protein_coding UFL1 2 OTTHUMG00000015238.1 +53227 chr6 HAVANA gene 96562548 96616636 2135.0 + 0 ENSG00000112214.10 protein_coding FHL5 2 OTTHUMG00000015239.2 +53228 chr6 HAVANA gene 96648489 96649069 581.0 - 0 ENSG00000213183.3 processed_pseudogene RPS7P8 1 OTTHUMG00000015240.1 pseudo_consens +53229 chr6 ENSEMBL gene 96649453 96649591 139.0 - 0 ENSG00000207309.1 snRNA RNU4-70P 3 +53230 chr6 HAVANA gene 96653274 96654142 869.0 + 0 ENSG00000219139.1 processed_pseudogene TYMSP1 1 OTTHUMG00000015241.1 pseudo_consens +53231 chr6 HAVANA gene 96672129 96672969 841.0 - 0 ENSG00000217331.1 processed_pseudogene AL355143.1 1 OTTHUMG00000015242.1 pseudo_consens +53232 chr6 HAVANA gene 96750824 96751728 905.0 + 0 ENSG00000216518.1 processed_pseudogene EEF1GP6 1 OTTHUMG00000015243.1 pseudo_consens +53233 chr6 HAVANA gene 96785137 96795821 481.0 + 0 ENSG00000224384.1 antisense AL033379.1 2 OTTHUMG00000015244.1 +53234 chr6 HAVANA gene 96794126 96837463 5952.0 - 0 ENSG00000112218.8 protein_coding GPR63 2 OTTHUMG00000015245.2 +53235 chr6 HAVANA gene 96889313 96897881 2540.0 - 0 ENSG00000123545.5 protein_coding NDUFAF4 2 OTTHUMG00000015246.1 +53236 chr6 ENSEMBL gene 96914699 96914995 297.0 - 0 ENSG00000263479.2 misc_RNA RN7SL509P 3 +53237 chr6 HAVANA gene 96924620 97140754 4124.0 + 0 ENSG00000186231.16 protein_coding KLHL32 2 OTTHUMG00000015247.1 +53238 chr6 HAVANA gene 97142161 97283217 21793.0 - 0 ENSG00000146263.11 protein_coding MMS22L 1 OTTHUMG00000015248.4 +53239 chr6 HAVANA gene 97710953 97717197 499.0 - 0 ENSG00000226207.1 lincRNA AL080316.1 2 OTTHUMG00000015252.1 +53240 chr6 ENSEMBL gene 98024531 98024621 91.0 + 0 ENSG00000238367.1 miRNA MIR2113 3 +53241 chr6 HAVANA gene 98179499 98179832 334.0 - 0 ENSG00000220505.2 processed_pseudogene EIF4EBP2P3 1 OTTHUMG00000015253.2 pseudo_consens +53242 chr6 HAVANA gene 98210020 98214683 771.0 - 0 ENSG00000236920.2 lincRNA AL590727.1 2 OTTHUMG00000015254.2 +53243 chr6 HAVANA gene 97283303 98399872 6012.0 + 0 ENSG00000271860.6 lincRNA AL589740.1 2 OTTHUMG00000015255.5 ncRNA_host +53244 chr6 HAVANA gene 98780257 98780505 249.0 - 0 ENSG00000187472.4 processed_pseudogene AL589826.1 1 OTTHUMG00000015257.3 pseudo_consens +53245 chr6 HAVANA gene 98829967 98832508 993.0 - 0 ENSG00000283010.1 lincRNA AL589826.2 2 OTTHUMG00000191489.1 +53246 chr6 HAVANA gene 98834592 98839470 4879.0 + 0 ENSG00000184486.9 protein_coding POU3F2 2 OTTHUMG00000015258.3 retrogene +53247 chr6 HAVANA gene 98868538 98948006 8115.0 - 0 ENSG00000112234.8 protein_coding FBXL4 2 OTTHUMG00000015259.3 +53248 chr6 HAVANA gene 99082449 99082761 313.0 + 0 ENSG00000271042.1 processed_pseudogene AL078603.1 1 OTTHUMG00000184408.1 pseudo_consens +53249 chr6 ENSEMBL gene 99124609 99124696 88.0 + 0 ENSG00000265226.1 miRNA MIR548AI 3 +53250 chr6 HAVANA gene 99174744 99175479 736.0 + 0 ENSG00000232699.3 processed_pseudogene BDH2P1 2 OTTHUMG00000015260.2 +53251 chr6 HAVANA gene 99271169 99350062 11662.0 - 0 ENSG00000146267.11 protein_coding FAXC 2 OTTHUMG00000015261.4 +53252 chr6 HAVANA gene 99369400 99394204 1458.0 - 0 ENSG00000132423.11 protein_coding COQ3 2 OTTHUMG00000015264.1 +53253 chr6 HAVANA gene 99398051 99425331 10870.0 - 0 ENSG00000132424.15 protein_coding PNISR 2 OTTHUMG00000015262.6 +53254 chr6 HAVANA gene 99424922 99431373 1638.0 + 0 ENSG00000228506.1 antisense AL513550.1 1 OTTHUMG00000015263.1 +53255 chr6 HAVANA gene 99432379 99521728 8051.0 - 0 ENSG00000123552.17 protein_coding USP45 2 OTTHUMG00000015267.7 +53256 chr6 ENSEMBL gene 99526097 99526205 109.0 + 0 ENSG00000274603.1 misc_RNA RF00019 3 +53257 chr6 HAVANA gene 99520693 99531918 962.0 + 0 ENSG00000228439.5 protein_coding TSTD3 2 OTTHUMG00000015265.3 ncRNA_host +53258 chr6 HAVANA gene 99542380 99568973 5765.0 - 0 ENSG00000112237.12 protein_coding CCNC 1 OTTHUMG00000015268.4 +53259 chr6 HAVANA gene 99568097 99569096 1000.0 + 0 ENSG00000272017.1 antisense AL137784.2 2 OTTHUMG00000185800.1 +53260 chr6 HAVANA gene 99575712 99576456 745.0 + 0 ENSG00000219755.1 processed_pseudogene AL137784.1 1 OTTHUMG00000015266.1 pseudo_consens +53261 chr6 HAVANA gene 99587611 99589898 2288.0 + 0 ENSG00000279170.1 TEC AL137784.3 2 OTTHUMG00000175934.1 +53262 chr6 HAVANA gene 99606730 99615578 3276.0 + 0 ENSG00000112238.11 protein_coding PRDM13 2 OTTHUMG00000015269.4 +53263 chr6 ENSEMBL gene 99642237 99642347 111.0 - 0 ENSG00000199303.1 misc_RNA RF00019 3 +53264 chr6 HAVANA gene 99919910 99994247 2392.0 - 0 ENSG00000152034.10 protein_coding MCHR2 2 OTTHUMG00000015270.2 +53265 chr6 HAVANA gene 100050372 100051236 865.0 - 0 ENSG00000219257.2 processed_pseudogene NPM1P38 1 OTTHUMG00000015272.2 pseudo_consens +53266 chr6 HAVANA gene 99993944 100076413 1268.0 + 0 ENSG00000229315.6 antisense MCHR2-AS1 2 OTTHUMG00000015271.3 +53267 chr6 HAVANA gene 100093311 100093768 458.0 - 0 ENSG00000275716.1 processed_pseudogene AL080285.2 1 OTTHUMG00000187635.1 pseudo_consens +53268 chr6 HAVANA gene 100136064 100136663 600.0 + 0 ENSG00000213177.3 processed_pseudogene PRDX2P4 1 OTTHUMG00000015274.1 pseudo_consens +53269 chr6 HAVANA gene 100177209 100178192 984.0 + 0 ENSG00000216378.1 processed_pseudogene AL080285.1 1 OTTHUMG00000015273.1 pseudo_consens +53270 chr6 HAVANA gene 100427118 100437484 380.0 + 0 ENSG00000228082.1 antisense Z86062.2 2 OTTHUMG00000015276.1 +53271 chr6 HAVANA gene 100385015 100464929 9274.0 - 0 ENSG00000112246.9 protein_coding SIM1 2 OTTHUMG00000015275.3 +53272 chr6 HAVANA gene 100530276 100531052 777.0 + 0 ENSG00000220695.1 processed_pseudogene Z86062.1 1 OTTHUMG00000015277.2 pseudo_consens +53273 chr6 HAVANA gene 100508194 100881372 11731.0 - 0 ENSG00000112249.13 protein_coding ASCC3 2 OTTHUMG00000015279.3 +53274 chr6 HAVANA gene 100881471 100882987 1517.0 + 0 ENSG00000260000.2 antisense AL133338.1 2 OTTHUMG00000175935.2 +53275 chr6 HAVANA gene 100889603 100890338 736.0 + 0 ENSG00000270987.1 processed_pseudogene AL133338.2 1 OTTHUMG00000184407.1 pseudo_consens +53276 chr6 HAVANA gene 101430411 101431553 1143.0 - 0 ENSG00000218475.2 processed_pseudogene ACTG1P18 1 OTTHUMG00000015280.2 pseudo_consens +53277 chr6 HAVANA gene 101181257 102070083 7585.0 + 0 ENSG00000164418.20 protein_coding GRIK2 2 OTTHUMG00000016328.7 +53278 chr6 HAVANA gene 102078872 102079555 684.0 + 0 ENSG00000218536.1 processed_pseudogene AP002530.1 2 OTTHUMG00000015281.1 +53279 chr6 HAVANA gene 102453367 102453792 426.0 - 0 ENSG00000219757.1 processed_pseudogene AL357139.1 1 OTTHUMG00000015282.1 pseudo_consens +53280 chr6 HAVANA gene 103002514 103003897 1384.0 + 0 ENSG00000217120.1 processed_pseudogene Z98755.1 2 OTTHUMG00000015283.1 +53281 chr6 ENSEMBL gene 103583135 103583268 134.0 + 0 ENSG00000202283.1 snoRNA RF00438 3 +53282 chr6 HAVANA gene 104017633 104019748 2116.0 - 0 ENSG00000216817.1 processed_pseudogene R3HDM2P2 1 OTTHUMG00000015285.1 pseudo_consens +53283 chr6 HAVANA gene 104025540 104026763 865.0 - 0 ENSG00000214428.3 processed_pseudogene NPM1P10 1 OTTHUMG00000015284.2 pseudo_consens +53284 chr6 HAVANA gene 104687241 104687671 431.0 + 0 ENSG00000218173.1 processed_pseudogene AL356967.1 2 OTTHUMG00000015286.1 +53285 chr6 ENSEMBL gene 104766822 104766926 105.0 + 0 ENSG00000252944.1 snRNA RNU6-897P 3 +53286 chr6 HAVANA gene 104831129 104845820 254.0 - 0 ENSG00000227535.2 sense_overlapping AL357315.1 2 OTTHUMG00000015288.2 overlapping_locus +53287 chr6 HAVANA gene 104728093 104859919 9238.0 - 0 ENSG00000085382.11 protein_coding HACE1 2 OTTHUMG00000015287.4 overlapping_locus +53288 chr6 HAVANA gene 104860449 104862123 1675.0 + 0 ENSG00000271099.1 processed_pseudogene AL357315.2 1 OTTHUMG00000184406.1 pseudo_consens +53289 chr6 HAVANA gene 104864464 104941447 2860.0 - 0 ENSG00000203809.6 lincRNA LIN28B-AS1 2 OTTHUMG00000015289.3 +53290 chr6 ENSEMBL gene 105045562 105045668 107.0 - 0 ENSG00000212147.1 snRNA RNU6-1106P 3 +53291 chr6 HAVANA gene 104936616 105083332 6002.0 + 0 ENSG00000187772.7 protein_coding LIN28B 2 OTTHUMG00000015290.3 +53292 chr6 HAVANA gene 105096822 105137174 5808.0 - 0 ENSG00000112276.13 protein_coding BVES 2 OTTHUMG00000015291.2 +53293 chr6 HAVANA gene 105136308 105169945 2347.0 + 0 ENSG00000203808.11 antisense BVES-AS1 2 OTTHUMG00000015292.3 +53294 chr6 HAVANA gene 105158280 105179995 1881.0 - 0 ENSG00000132429.9 protein_coding POPDC3 2 OTTHUMG00000015293.2 +53295 chr6 HAVANA gene 105273220 105273760 541.0 - 0 ENSG00000272102.1 lincRNA AL133406.3 2 OTTHUMG00000185802.1 +53296 chr6 HAVANA gene 105279016 105281755 1198.0 + 0 ENSG00000231628.1 antisense AL133406.2 2 OTTHUMG00000015296.1 +53297 chr6 HAVANA gene 105298149 105298895 747.0 + 0 ENSG00000216639.1 processed_pseudogene AL133406.1 1 OTTHUMG00000015295.1 pseudo_consens +53298 chr6 HAVANA gene 105302453 105302823 371.0 - 0 ENSG00000219902.1 processed_pseudogene RPL35P3 1 OTTHUMG00000015294.1 pseudo_consens,overlapping_locus +53299 chr6 HAVANA gene 105277565 105403084 3762.0 - 0 ENSG00000085377.13 protein_coding PREP 2 OTTHUMG00000015297.1 overlapping_locus +53300 chr6 HAVANA gene 105612667 105632196 589.0 - 0 ENSG00000237567.1 lincRNA Z97206.2 2 OTTHUMG00000015298.1 +53301 chr6 HAVANA gene 105666326 105667998 1673.0 + 0 ENSG00000219088.1 processed_pseudogene Z97206.1 1 OTTHUMG00000016419.1 pseudo_consens +53302 chr6 HAVANA gene 105679378 105893041 905.0 - 0 ENSG00000284999.1 lincRNA AL591518.1 2 OTTHUMG00000192606.1 +53303 chr6 ENSEMBL gene 105904373 105904687 315.0 + 0 ENSG00000200198.1 misc_RNA RN7SKP211 3 +53304 chr6 HAVANA gene 106100140 106100593 454.0 + 0 ENSG00000269919.1 sense_intronic AL022067.1 2 OTTHUMG00000184068.1 overlapping_locus +53305 chr6 HAVANA gene 106086320 106109939 6369.0 + 0 ENSG00000057657.16 protein_coding PRDM1 1 OTTHUMG00000015299.6 overlapping_locus +53306 chr6 ENSEMBL gene 106271634 106271720 87.0 + 0 ENSG00000273744.1 snRNA RF00015 3 +53307 chr6 ENSEMBL gene 106283413 106283711 299.0 - 0 ENSG00000244710.3 misc_RNA RN7SL47P 3 +53308 chr6 ENSEMBL gene 106304176 106304286 111.0 + 0 ENSG00000252444.1 snRNA RNU6-344P 3 +53309 chr6 HAVANA gene 106045423 106325791 5517.0 - 0 ENSG00000057663.15 protein_coding ATG5 2 OTTHUMG00000016193.5 ncRNA_host +53310 chr6 HAVANA gene 106358566 106359717 414.0 - 0 ENSG00000233941.1 antisense AL356859.1 2 OTTHUMG00000015300.1 +53311 chr6 ENSEMBL gene 106420706 106420807 102.0 + 0 ENSG00000207499.1 misc_RNA RF00019 3 +53312 chr6 ENSEMBL gene 106449381 106449497 117.0 + 0 ENSG00000202386.1 rRNA_pseudogene RNA5SP211 3 +53313 chr6 ENSEMBL gene 106454828 106454929 102.0 + 0 ENSG00000200314.1 misc_RNA RF00019 3 +53314 chr6 HAVANA gene 106451496 106457248 415.0 - 0 ENSG00000282408.1 antisense AL109920.1 2 OTTHUMG00000191159.1 +53315 chr6 HAVANA gene 106360808 106571978 10374.0 + 0 ENSG00000112297.14 protein_coding CRYBG1 2 OTTHUMG00000015302.3 ncRNA_host +53316 chr6 ENSEMBL gene 106607716 106607819 104.0 + 0 ENSG00000200295.1 snRNA RNU6-527P 3 +53317 chr6 HAVANA gene 106571971 106629487 1974.0 - 0 ENSG00000130347.12 protein_coding RTN4IP1 2 OTTHUMG00000015304.1 +53318 chr6 HAVANA gene 106642463 106642928 466.0 + 0 ENSG00000216977.1 processed_pseudogene RPL21P65 1 OTTHUMG00000015303.1 pseudo_consens,overlapping_locus +53319 chr6 HAVANA gene 106629578 106668417 5453.0 + 0 ENSG00000130348.11 protein_coding QRSL1 2 OTTHUMG00000015301.1 overlapping_locus +53320 chr6 HAVANA gene 106695535 106699994 419.0 + 0 ENSG00000229654.1 lincRNA LINC02526 2 OTTHUMG00000015306.1 +53321 chr6 ENSEMBL gene 106738948 106739054 107.0 - 0 ENSG00000202285.1 snRNA RNU6-117P 3 +53322 chr6 ENSEMBL gene 106784125 106784220 96.0 + 0 ENSG00000207577.1 miRNA MIR587 3 +53323 chr6 HAVANA gene 106717452 106787541 6610.0 - 0 ENSG00000235142.8 lincRNA LINC02532 2 OTTHUMG00000015305.5 ncRNA_host +53324 chr6 HAVANA gene 106969831 106975627 3097.0 - 0 ENSG00000272398.5 protein_coding CD24 2 OTTHUMG00000188439.1 +53325 chr6 HAVANA gene 107028213 107051342 2036.0 + 0 ENSG00000130349.9 protein_coding C6orf203 2 OTTHUMG00000015307.3 +53326 chr6 HAVANA gene 107065182 107115269 6839.0 - 0 ENSG00000178409.13 protein_coding BEND3 2 OTTHUMG00000015308.1 +53327 chr6 ENSEMBL gene 107133071 107133170 100.0 + 0 ENSG00000252125.1 snRNA RNU6-1299P 3 +53328 chr6 HAVANA gene 107192300 107192573 274.0 + 0 ENSG00000276620.1 processed_pseudogene AL591516.1 2 OTTHUMG00000187636.1 +53329 chr6 HAVANA gene 107229759 107230152 394.0 + 0 ENSG00000220237.1 processed_pseudogene RPS24P12 1 OTTHUMG00000015309.1 pseudo_consens +53330 chr6 HAVANA gene 107152557 107459564 3926.0 - 0 ENSG00000164494.11 protein_coding PDSS2 2 OTTHUMG00000059359.2 +53331 chr6 HAVANA gene 107509803 107511721 604.0 - 0 ENSG00000234206.5 antisense AL121957.1 2 OTTHUMG00000015310.1 +53332 chr6 HAVANA gene 107489958 107660167 6904.0 + 0 ENSG00000112320.11 protein_coding SOBP 2 OTTHUMG00000015312.3 +53333 chr6 HAVANA gene 107697299 107700218 2920.0 - 0 ENSG00000280135.1 TEC AL096816.1 2 OTTHUMG00000175936.1 +53334 chr6 HAVANA gene 107704104 107824317 7116.0 - 0 ENSG00000146285.13 protein_coding SCML4 1 OTTHUMG00000015313.5 +53335 chr6 ENSEMBL gene 107930088 107930182 95.0 + 0 ENSG00000238420.1 snRNA RNU6-437P 3 +53336 chr6 HAVANA gene 107931800 107932254 455.0 + 0 ENSG00000232778.1 processed_pseudogene RPL23AP50 1 OTTHUMG00000015314.2 pseudo_consens +53337 chr6 HAVANA gene 107867756 107958189 8587.0 - 0 ENSG00000025796.13 protein_coding SEC63 1 OTTHUMG00000015316.6 +53338 chr6 HAVANA gene 107957413 107959986 2574.0 + 0 ENSG00000272476.1 antisense AL024507.2 2 OTTHUMG00000185803.1 +53339 chr6 HAVANA gene 107985089 107985690 274.0 - 0 ENSG00000224987.1 processed_pseudogene AL024507.1 2 OTTHUMG00000048758.1 +53340 chr6 ENSEMBL gene 107985659 107985773 115.0 - 0 ENSG00000253090.2 snoRNA RF00045 3 +53341 chr6 HAVANA gene 107985811 107986031 221.0 - 0 ENSG00000231112.1 processed_pseudogene MTHFD2P3 1 OTTHUMG00000015315.2 pseudo_consens +53342 chr6 HAVANA gene 108004357 108005568 1212.0 - 0 ENSG00000225093.1 processed_pseudogene RPL3P7 1 OTTHUMG00000015318.2 pseudo_consens +53343 chr6 HAVANA gene 108030249 108030718 470.0 - 0 ENSG00000271734.1 lincRNA Z98200.1 2 OTTHUMG00000185804.1 +53344 chr6 ENSEMBL gene 108060818 108060930 113.0 + 0 ENSG00000238490.1 misc_RNA RF00019 3 +53345 chr6 HAVANA gene 108123515 108159392 3452.0 + 0 ENSG00000225174.1 lincRNA OSTM1-AS1 2 OTTHUMG00000015320.2 +53346 chr6 HAVANA gene 108041409 108165854 5325.0 - 0 ENSG00000081087.14 protein_coding OSTM1 2 OTTHUMG00000015317.6 +53347 chr6 HAVANA gene 108178871 108179317 447.0 + 0 ENSG00000279398.1 TEC AL078596.1 2 OTTHUMG00000150108.1 overlapping_locus +53348 chr6 HAVANA gene 108166058 108188809 3733.0 + 0 ENSG00000112333.11 protein_coding NR2E1 1 OTTHUMG00000015319.5 overlapping_locus +53349 chr6 HAVANA gene 108252214 108252400 187.0 + 0 ENSG00000233511.1 processed_pseudogene Z98742.2 2 OTTHUMG00000055218.1 +53350 chr6 ENSEMBL gene 108252401 108252507 107.0 + 0 ENSG00000212525.1 rRNA_pseudogene RNA5SP212 3 +53351 chr6 HAVANA gene 108211222 108261260 1842.0 - 0 ENSG00000112335.14 protein_coding SNX3 2 OTTHUMG00000015323.4 +53352 chr6 HAVANA gene 108275642 108276546 632.0 + 0 ENSG00000230248.1 lincRNA Z98742.1 2 OTTHUMG00000015322.2 +53353 chr6 ENSEMBL gene 108292766 108292869 104.0 + 0 ENSG00000206974.1 snRNA RNU6-1144P 3 +53354 chr6 HAVANA gene 108318079 108318404 326.0 + 0 ENSG00000238055.1 processed_pseudogene Z98742.3 1 OTTHUMG00000102191.1 pseudo_consens,overlapping_locus +53355 chr6 HAVANA gene 108359084 108359863 780.0 - 0 ENSG00000279498.1 TEC AL356121.2 2 OTTHUMG00000150107.1 +53356 chr6 HAVANA gene 108372772 108372927 156.0 - 0 ENSG00000238079.1 processed_pseudogene AL356121.1 1 OTTHUMG00000102192.2 pseudo_consens +53357 chr6 HAVANA gene 108387512 108388080 494.0 + 0 ENSG00000227072.1 processed_pseudogene AL353706.1 2 OTTHUMG00000102193.1 overlapping_locus +53358 chr6 ENSEMBL gene 108392073 108392177 105.0 + 0 ENSG00000200799.1 snRNA RNU6-770P 3 +53359 chr6 HAVANA gene 108294894 108526796 8450.0 + 0 ENSG00000135537.16 protein_coding AFG1L 1 OTTHUMG00000015324.7 ncRNA_host,overlapping_locus +53360 chr6 HAVANA gene 108551018 108551207 190.0 - 0 ENSG00000271608.1 processed_pseudogene AL391646.1 1 OTTHUMG00000184582.1 pseudo_consens +53361 chr6 HAVANA gene 108618000 108618285 286.0 - 0 ENSG00000228976.1 processed_pseudogene SUMO2P8 1 OTTHUMG00000015326.2 pseudo_consens +53362 chr6 HAVANA gene 108559835 108684774 7721.0 + 0 ENSG00000118689.14 protein_coding FOXO3 2 OTTHUMG00000015327.2 +53363 chr6 HAVANA gene 108751654 108769942 3311.0 + 0 ENSG00000203801.8 lincRNA LINC00222 2 OTTHUMG00000015330.2 +53364 chr6 HAVANA gene 108782126 108787053 4928.0 - 0 ENSG00000219565.2 transcribed_processed_pseudogene ZNF259P1 1 OTTHUMG00000016136.2 pseudo_consens +53365 chr6 HAVANA gene 108817680 108817926 247.0 + 0 ENSG00000231559.1 processed_pseudogene Z95118.1 1 OTTHUMG00000157125.1 pseudo_consens +53366 chr6 HAVANA gene 108856400 108856737 338.0 - 0 ENSG00000218872.1 processed_pseudogene AL445189.1 1 OTTHUMG00000015332.1 pseudo_consens +53367 chr6 HAVANA gene 108907615 108907873 259.0 - 0 ENSG00000228834.1 processed_pseudogene AL445189.2 1 OTTHUMG00000015333.2 pseudo_consens +53368 chr6 HAVANA gene 108922976 108924103 112.0 - 0 ENSG00000230290.1 antisense ARMC2-AS1 2 OTTHUMG00000015334.1 +53369 chr6 HAVANA gene 108848416 108974472 4250.0 + 0 ENSG00000118690.12 protein_coding ARMC2 1 OTTHUMG00000015335.4 +53370 chr6 HAVANA gene 108998482 108999125 644.0 + 0 ENSG00000271730.1 antisense AL390208.1 2 OTTHUMG00000185805.1 +53371 chr6 ENSEMBL gene 109059509 109059614 106.0 - 0 ENSG00000199944.1 snRNA RNU6-653P 3 +53372 chr6 HAVANA gene 108986437 109094819 5121.0 - 0 ENSG00000080546.13 protein_coding SESN1 2 OTTHUMG00000015338.6 ncRNA_host +53373 chr6 HAVANA gene 109095110 109163932 6432.0 + 0 ENSG00000183137.14 protein_coding CEP57L1 1 OTTHUMG00000015336.8 +53374 chr6 HAVANA gene 109288440 109288562 123.0 + 0 ENSG00000233908.1 processed_pseudogene AL359711.1 1 OTTHUMG00000015340.2 pseudo_consens,overlapping_locus +53375 chr6 HAVANA gene 109288571 109290503 906.0 - 0 ENSG00000219700.1 processed_pseudogene PTCHD3P3 2 OTTHUMG00000015341.1 +53376 chr6 ENSEMBL gene 109305494 109305595 102.0 + 0 ENSG00000201023.1 misc_RNA RNY3P11 3 +53377 chr6 HAVANA gene 109327175 109327914 740.0 - 0 ENSG00000218632.3 processed_pseudogene RPL7P28 1 OTTHUMG00000015343.2 pseudo_consens +53378 chr6 HAVANA gene 109165831 109355063 10012.0 + 0 ENSG00000203799.12 transcribed_unitary_pseudogene CCDC162P 1 OTTHUMG00000015342.8 pseudo_consens,overlapping_locus +53379 chr6 HAVANA gene 109366514 109382812 7206.0 - 0 ENSG00000135535.16 protein_coding CD164 2 OTTHUMG00000015339.3 +53380 chr6 HAVANA gene 109382795 109383666 872.0 + 0 ENSG00000260273.1 antisense AL359711.2 2 OTTHUMG00000175937.1 +53381 chr6 HAVANA gene 109390215 109441171 4481.0 - 0 ENSG00000185250.15 protein_coding PPIL6 2 OTTHUMG00000036593.6 +53382 chr6 HAVANA gene 109440763 109443919 2014.0 + 0 ENSG00000135587.8 protein_coding SMPD2 2 OTTHUMG00000015348.3 +53383 chr6 HAVANA gene 109444062 109465968 7056.0 - 0 ENSG00000135596.17 protein_coding MICAL1 1 OTTHUMG00000015350.8 overlapping_locus +53384 chr6 HAVANA gene 109462594 109483237 5519.0 - 0 ENSG00000112365.4 protein_coding ZBTB24 2 OTTHUMG00000015349.1 overlapping_locus +53385 chr6 HAVANA gene 109487906 109506800 382.0 + 0 ENSG00000223537.2 antisense AL109947.1 2 OTTHUMG00000015347.1 +53386 chr6 HAVANA gene 109492856 109691217 10098.0 - 0 ENSG00000155085.15 protein_coding AK9 1 OTTHUMG00000157658.8 +53387 chr6 HAVANA gene 109691312 109825428 3592.0 + 0 ENSG00000112367.10 protein_coding FIG4 2 OTTHUMG00000015352.6 +53388 chr6 HAVANA gene 109826522 109828785 465.0 + 0 ENSG00000232311.1 lincRNA AL512303.1 1 OTTHUMG00000015353.1 +53389 chr6 HAVANA gene 109978256 109980718 1945.0 + 0 ENSG00000146360.8 protein_coding GPR6 2 OTTHUMG00000015354.2 +53390 chr6 HAVANA gene 110099819 110180004 3260.0 - 0 ENSG00000112290.12 protein_coding WASF1 2 OTTHUMG00000015357.3 +53391 chr6 HAVANA gene 110180141 110254275 5946.0 + 0 ENSG00000168438.14 protein_coding CDC40 2 OTTHUMG00000015358.5 +53392 chr6 HAVANA gene 110245928 110358272 1774.0 - 0 ENSG00000053328.8 protein_coding METTL24 1 OTTHUMG00000015359.1 +53393 chr6 HAVANA gene 110391771 110415562 2130.0 - 0 ENSG00000203797.9 protein_coding DDO 2 OTTHUMG00000015360.3 +53394 chr6 ENSEMBL gene 110439996 110440303 308.0 - 0 ENSG00000241162.3 misc_RNA RN7SL617P 3 +53395 chr6 HAVANA gene 110424687 110476641 3907.0 - 0 ENSG00000004809.13 protein_coding SLC22A16 2 OTTHUMG00000016171.4 ncRNA_host +53396 chr6 HAVANA gene 110477907 110479436 1530.0 + 0 ENSG00000260188.1 antisense AC002464.1 2 OTTHUMG00000175938.1 +53397 chr6 HAVANA gene 110562175 110562615 441.0 - 0 ENSG00000219559.1 processed_pseudogene AL512430.3 1 OTTHUMG00000015363.1 pseudo_consens +53398 chr6 HAVANA gene 110598093 110598705 613.0 + 0 ENSG00000270934.1 processed_pseudogene AL512430.4 1 OTTHUMG00000184405.1 pseudo_consens +53399 chr6 HAVANA gene 110645699 110646558 860.0 + 0 ENSG00000213150.2 processed_pseudogene AL512430.1 1 OTTHUMG00000015362.1 pseudo_consens +53400 chr6 HAVANA gene 110700562 110700900 339.0 + 0 ENSG00000217041.1 processed_pseudogene AL512430.2 1 OTTHUMG00000015361.1 pseudo_consens +53401 chr6 HAVANA gene 110706362 110706882 204.0 - 0 ENSG00000219150.2 processed_pseudogene AL603914.1 1 OTTHUMG00000015364.3 pseudo_consens,overlapping_locus +53402 chr6 ENSEMBL gene 110722250 110722348 99.0 - 0 ENSG00000200522.1 snRNA RNU6-957P 3 +53403 chr6 HAVANA gene 110609978 110815958 7492.0 - 0 ENSG00000155111.14 protein_coding CDK19 2 OTTHUMG00000015365.6 ncRNA_host,overlapping_locus +53404 chr6 ENSEMBL gene 110848546 110848673 128.0 + 0 ENSG00000212587.1 snoRNA SNORA40C 3 +53405 chr6 ENSEMBL gene 110856417 110856522 106.0 + 0 ENSG00000199360.1 snRNA RNU6-1115P 3 +53406 chr6 HAVANA gene 110858239 110859147 909.0 + 0 ENSG00000213149.3 processed_pseudogene CNN2P9 1 OTTHUMG00000016267.1 pseudo_consens +53407 chr6 HAVANA gene 110863860 110864451 311.0 + 0 ENSG00000271607.1 processed_pseudogene Z84480.1 1 OTTHUMG00000184403.1 pseudo_consens +53408 chr6 HAVANA gene 110874770 110895713 7027.0 + 0 ENSG00000123505.15 protein_coding AMD1 2 OTTHUMG00000015369.5 +53409 chr6 HAVANA gene 110923566 110924107 542.0 + 0 ENSG00000219329.1 processed_pseudogene AL357515.1 1 OTTHUMG00000015366.1 pseudo_consens +53410 chr6 HAVANA gene 110958560 110967890 1067.0 + 0 ENSG00000155115.6 protein_coding GTF3C6 2 OTTHUMG00000015370.1 +53411 chr6 HAVANA gene 110982015 111028263 3922.0 + 0 ENSG00000197498.12 protein_coding RPF2 1 OTTHUMG00000015368.2 +53412 chr6 HAVANA gene 111046868 111047521 654.0 - 0 ENSG00000218803.1 processed_pseudogene GSTM2P1 1 OTTHUMG00000015367.1 pseudo_consens +53413 chr6 ENSEMBL gene 111091213 111091332 120.0 - 0 ENSG00000200926.1 snRNA RNU6-960P 3 +53414 chr6 HAVANA gene 111087503 111231194 11237.0 + 0 ENSG00000112394.16 protein_coding SLC16A10 2 OTTHUMG00000015371.4 +53415 chr6 HAVANA gene 111227747 111259034 433.0 - 0 ENSG00000231046.1 antisense AL360227.1 2 OTTHUMG00000015375.1 +53416 chr6 HAVANA gene 111259348 111271167 5958.0 + 0 ENSG00000173214.5 protein_coding MFSD4B 2 OTTHUMG00000015372.1 +53417 chr6 HAVANA gene 111277932 111278742 557.0 + 0 ENSG00000230177.1 antisense AL080317.1 2 OTTHUMG00000015374.1 +53418 chr6 HAVANA gene 111297126 111298510 1385.0 + 0 ENSG00000271789.1 lincRNA AL080317.2 2 OTTHUMG00000185815.1 +53419 chr6 HAVANA gene 111309203 111313517 4315.0 + 0 ENSG00000272356.1 antisense AL080317.3 2 OTTHUMG00000185816.1 +53420 chr6 HAVANA gene 111353702 111354183 482.0 + 0 ENSG00000220392.1 processed_pseudogene FCF1P5 1 OTTHUMG00000015373.1 pseudo_consens +53421 chr6 HAVANA gene 111360641 111361607 382.0 - 0 ENSG00000229276.1 sense_intronic REV3L-IT1 2 OTTHUMG00000046182.1 overlapping_locus +53422 chr6 HAVANA gene 111430260 111431781 1522.0 + 0 ENSG00000218676.1 processed_pseudogene BRD7P4 1 OTTHUMG00000015376.1 pseudo_consens +53423 chr6 HAVANA gene 111299028 111483715 12425.0 - 0 ENSG00000009413.15 protein_coding REV3L 2 OTTHUMG00000016318.4 overlapping_locus +53424 chr6 HAVANA gene 111494991 111495713 654.0 - 0 ENSG00000220506.2 processed_pseudogene AL136310.1 2 OTTHUMG00000015377.2 +53425 chr6 HAVANA gene 111483511 111598302 4819.0 + 0 ENSG00000231889.7 antisense TRAF3IP2-AS1 2 OTTHUMG00000015378.4 +53426 chr6 HAVANA gene 111599875 111602295 2421.0 + 0 ENSG00000255389.1 antisense Z97989.1 2 OTTHUMG00000165195.2 +53427 chr6 HAVANA gene 111556454 111606278 6553.0 - 0 ENSG00000056972.18 protein_coding TRAF3IP2 1 OTTHUMG00000015379.4 +53428 chr6 HAVANA gene 111660332 111873452 7411.0 - 0 ENSG00000010810.17 protein_coding FYN 2 OTTHUMG00000016305.10 +53429 chr6 HAVANA gene 111900489 111901851 762.0 - 0 ENSG00000227012.2 lincRNA LINC02527 1 OTTHUMG00000015381.2 +53430 chr6 HAVANA gene 112054072 112070969 3202.0 + 0 ENSG00000112761.20 protein_coding WISP3 1 OTTHUMG00000185101.2 +53431 chr6 HAVANA gene 112070777 112087529 6973.0 - 0 ENSG00000074935.13 protein_coding TUBE1 2 OTTHUMG00000015382.2 +53432 chr6 HAVANA gene 112087599 112102790 2543.0 + 0 ENSG00000203778.7 protein_coding FAM229B 2 OTTHUMG00000015383.3 +53433 chr6 HAVANA gene 112154765 112166476 1509.0 + 0 ENSG00000237234.7 antisense Z99289.1 2 OTTHUMG00000015384.4 +53434 chr6 ENSEMBL gene 112196440 112196546 107.0 - 0 ENSG00000207044.1 snRNA RNU6-1226P 3 +53435 chr6 HAVANA gene 112217640 112219570 1931.0 - 0 ENSG00000270661.1 lincRNA Z99289.2 2 OTTHUMG00000185109.1 overlapping_locus +53436 chr6 HAVANA gene 112234165 112234758 594.0 - 0 ENSG00000271208.1 lincRNA Z99289.3 2 OTTHUMG00000185110.1 overlapping_locus +53437 chr6 HAVANA gene 112108760 112254939 11575.0 - 0 ENSG00000112769.18 protein_coding LAMA4 1 OTTHUMG00000015386.8 ncRNA_host,overlapping_locus +53438 chr6 HAVANA gene 112236093 112307009 4132.0 + 0 ENSG00000226440.7 antisense AL365214.2 2 OTTHUMG00000015392.6 overlapping_locus +53439 chr6 HAVANA gene 112325753 112326749 997.0 - 0 ENSG00000216663.3 processed_pseudogene AL365214.1 1 OTTHUMG00000015391.1 pseudo_consens +53440 chr6 HAVANA gene 112236806 112350094 1511.0 + 0 ENSG00000281613.2 protein_coding AL365214.3 2 OTTHUMG00000189714.3 overlapping_locus +53441 chr6 HAVANA gene 112347330 112351296 1900.0 + 0 ENSG00000251258.1 protein_coding RFPL4B 2 OTTHUMG00000015390.2 overlapping_locus +53442 chr6 HAVANA gene 112355841 112356714 874.0 - 0 ENSG00000219773.1 processed_pseudogene RPSAP45 1 OTTHUMG00000015389.1 pseudo_consens +53443 chr6 HAVANA gene 112361437 112362722 1286.0 - 0 ENSG00000215807.4 processed_pseudogene KRT18P65 1 OTTHUMG00000015388.1 pseudo_consens +53444 chr6 HAVANA gene 112365704 112367444 1741.0 - 0 ENSG00000217770.1 processed_pseudogene FEM1AP3 2 OTTHUMG00000015387.1 +53445 chr6 HAVANA gene 112476538 112481636 488.0 - 0 ENSG00000232299.1 lincRNA AL357514.1 2 OTTHUMG00000015393.1 +53446 chr6 HAVANA gene 112616703 112617880 1178.0 - 0 ENSG00000225580.2 processed_pseudogene AL358942.1 1 OTTHUMG00000015394.1 pseudo_consens +53447 chr6 HAVANA gene 112825939 112826470 532.0 + 0 ENSG00000271498.1 processed_pseudogene AL360085.1 2 OTTHUMG00000184400.1 +53448 chr6 ENSEMBL gene 112971493 112971599 107.0 + 0 ENSG00000201386.1 snRNA RNU6-1163P 3 +53449 chr6 HAVANA gene 113010937 113011415 479.0 + 0 ENSG00000218490.1 processed_pseudogene FCF1P10 1 OTTHUMG00000015395.1 pseudo_consens +53450 chr6 HAVANA gene 113222166 113224072 1586.0 + 0 ENSG00000216904.2 processed_pseudogene SOCS5P5 1 OTTHUMG00000015396.2 pseudo_consens +53451 chr6 HAVANA gene 113357003 113367944 507.0 - 0 ENSG00000223811.1 lincRNA AL589684.1 2 OTTHUMG00000015398.1 +53452 chr6 HAVANA gene 113428540 113433421 607.0 - 0 ENSG00000232316.1 lincRNA LINC02518 1 OTTHUMG00000015399.1 +53453 chr6 HAVANA gene 113531118 113543793 597.0 + 0 ENSG00000236347.1 lincRNA AL513123.1 1 OTTHUMG00000015400.1 +53454 chr6 HAVANA gene 113581501 113581947 447.0 + 0 ENSG00000218208.1 processed_pseudogene RPS27AP11 1 OTTHUMG00000015402.1 pseudo_consens +53455 chr6 HAVANA gene 113616927 113650090 2145.0 - 0 ENSG00000230943.2 lincRNA LINC02541 1 OTTHUMG00000015401.2 +53456 chr6 HAVANA gene 113791829 113837368 375.0 - 0 ENSG00000231912.2 lincRNA FO393415.2 2 OTTHUMG00000015403.2 +53457 chr6 HAVANA gene 113839279 113839621 343.0 + 0 ENSG00000219758.6 processed_pseudogene FO393415.1 1 OTTHUMG00000015404.1 pseudo_consens +53458 chr6 HAVANA gene 113857362 113863471 4275.0 + 0 ENSG00000277443.2 protein_coding MARCKS 2 OTTHUMG00000188327.1 +53459 chr6 HAVANA gene 113868013 113873351 2755.0 - 0 ENSG00000227502.2 lincRNA LINC01268 2 OTTHUMG00000015405.3 +53460 chr6 HAVANA gene 113904138 113921642 2255.0 + 0 ENSG00000175967.3 antisense FLJ34503 2 OTTHUMG00000133566.1 +53461 chr6 HAVANA gene 113933028 114011308 15461.0 - 0 ENSG00000196591.11 protein_coding HDAC2 1 OTTHUMG00000015411.4 +53462 chr6 HAVANA gene 114019621 114020483 555.0 - 0 ENSG00000216723.1 processed_pseudogene NUDT19P3 1 OTTHUMG00000015410.1 pseudo_consens +53463 chr6 HAVANA gene 114084168 114084792 625.0 - 0 ENSG00000216471.3 processed_pseudogene RPSAP43 1 OTTHUMG00000015413.1 pseudo_consens,overlapping_locus +53464 chr6 ENSEMBL gene 114220681 114220786 106.0 - 0 ENSG00000212333.1 rRNA_pseudogene RNA5SP213 3 +53465 chr6 HAVANA gene 114055586 114343045 4104.0 - 0 ENSG00000249853.7 protein_coding HS3ST5 1 OTTHUMG00000015412.3 overlapping_locus +53466 chr6 HAVANA gene 114349483 114350648 1166.0 - 0 ENSG00000218089.1 processed_pseudogene DNAJA1P4 1 OTTHUMG00000016197.1 pseudo_consens +53467 chr6 HAVANA gene 113969701 114471705 8063.0 + 0 ENSG00000228624.7 antisense HDAC2-AS2 2 OTTHUMG00000164691.5 +53468 chr6 HAVANA gene 114477350 114488752 943.0 - 0 ENSG00000232395.1 lincRNA AL138830.2 1 OTTHUMG00000015418.1 +53469 chr6 HAVANA gene 114523451 114535875 402.0 - 0 ENSG00000226079.1 lincRNA AL138830.1 1 OTTHUMG00000015419.1 +53470 chr6 ENSEMBL gene 114866873 114866976 104.0 - 0 ENSG00000251882.1 snRNA RNU6-475P 3 +53471 chr6 HAVANA gene 115358498 115358752 255.0 - 0 ENSG00000219619.2 processed_pseudogene AL606845.1 2 OTTHUMG00000015420.2 +53472 chr6 HAVANA gene 115633542 115634191 283.0 - 0 ENSG00000228777.1 lincRNA LINC02534 2 OTTHUMG00000015421.1 +53473 chr6 HAVANA gene 116038756 116039495 740.0 + 0 ENSG00000186743.2 processed_pseudogene TPI1P3 1 OTTHUMG00000015423.1 pseudo_consens +53474 chr6 HAVANA gene 115931149 116060758 13230.0 - 0 ENSG00000111816.7 protein_coding FRK 2 OTTHUMG00000015424.2 +53475 chr6 HAVANA gene 116137058 116137572 515.0 - 0 ENSG00000218428.1 processed_pseudogene NIP7P3 1 OTTHUMG00000015425.1 pseudo_consens,overlapping_locus +53476 chr6 HAVANA gene 116118923 116158747 3816.0 - 0 ENSG00000123500.9 protein_coding COL10A1 2 OTTHUMG00000015426.3 overlapping_locus +53477 chr6 HAVANA gene 116244187 116244728 421.0 - 0 ENSG00000236326.1 antisense AL050331.2 2 OTTHUMG00000015431.1 +53478 chr6 HAVANA gene 116100849 116249497 7309.0 + 0 ENSG00000178425.13 protein_coding NT5DC1 2 OTTHUMG00000015428.7 +53479 chr6 HAVANA gene 116249961 116254140 4180.0 - 0 ENSG00000187189.10 protein_coding TSPYL4 2 OTTHUMG00000015429.2 retrogene +53480 chr6 HAVANA gene 116258493 116259115 623.0 - 0 ENSG00000233558.1 processed_pseudogene AL050331.1 1 OTTHUMG00000015430.1 pseudo_consens +53481 chr6 HAVANA gene 116276578 116279903 3326.0 - 0 ENSG00000189241.6 protein_coding TSPYL1 2 OTTHUMG00000015427.1 retrogene +53482 chr6 HAVANA gene 116254173 116444860 15016.0 + 0 ENSG00000111817.17 protein_coding DSE 2 OTTHUMG00000015434.15 +53483 chr6 HAVANA gene 116453014 116453565 552.0 - 0 ENSG00000217241.1 processed_pseudogene CBX3P9 1 OTTHUMG00000015436.1 pseudo_consens +53484 chr6 HAVANA gene 116457323 116458669 1347.0 - 0 ENSG00000218153.2 processed_pseudogene KRT18P22 1 OTTHUMG00000015437.2 pseudo_consens +53485 chr6 HAVANA gene 116460739 116463692 530.0 - 0 ENSG00000244158.1 antisense Z84488.1 1 OTTHUMG00000159342.1 +53486 chr6 HAVANA gene 116399395 116463696 1180.0 + 0 ENSG00000285446.1 protein_coding Z84488.2 2 OTTHUMG00000192618.1 overlapping_locus +53487 chr6 HAVANA gene 116461370 116463779 1194.0 + 0 ENSG00000188820.12 protein_coding CALHM6 2 OTTHUMG00000015438.2 +53488 chr6 HAVANA gene 116492297 116497099 737.0 + 0 ENSG00000234117.2 antisense AL445224.1 2 OTTHUMG00000015439.2 +53489 chr6 HAVANA gene 116511646 116524792 9784.0 + 0 ENSG00000178033.5 protein_coding CALHM5 2 OTTHUMG00000015442.1 +53490 chr6 HAVANA gene 116494989 116545610 2757.0 - 0 ENSG00000173626.9 protein_coding TRAPPC3L 2 OTTHUMG00000015440.3 +53491 chr6 HAVANA gene 116529013 116558868 1932.0 + 0 ENSG00000164451.13 protein_coding CALHM4 2 OTTHUMG00000015443.6 +53492 chr6 HAVANA gene 116571367 116597675 5909.0 + 0 ENSG00000111832.12 protein_coding RWDD1 2 OTTHUMG00000015441.4 +53493 chr6 HAVANA gene 116616479 116632985 2840.0 + 0 ENSG00000111834.12 protein_coding RSPH4A 2 OTTHUMG00000015444.2 +53494 chr6 HAVANA gene 116635618 116668794 2656.0 - 0 ENSG00000153975.9 protein_coding ZUP1 2 OTTHUMG00000015445.1 +53495 chr6 HAVANA gene 116681187 116741866 11417.0 + 0 ENSG00000196911.10 protein_coding KPNA5 2 OTTHUMG00000015448.4 +53496 chr6 HAVANA gene 116752197 116765723 1036.0 - 0 ENSG00000183807.7 protein_coding FAM162B 2 OTTHUMG00000015446.2 +53497 chr6 HAVANA gene 116792085 116829037 2862.0 - 0 ENSG00000173612.9 protein_coding GPRC6A 2 OTTHUMG00000015447.2 +53498 chr6 HAVANA gene 116877212 116932163 4093.0 + 0 ENSG00000185002.9 protein_coding RFX6 2 OTTHUMG00000015449.4 +53499 chr6 HAVANA gene 117048670 117048838 169.0 - 0 ENSG00000217089.1 processed_pseudogene RPS29P13 1 OTTHUMG00000015450.1 pseudo_consens +53500 chr6 ENSEMBL gene 117060682 117060799 118.0 + 0 ENSG00000200248.1 rRNA_pseudogene RNA5SP214 3 +53501 chr6 HAVANA gene 117265558 117273565 2231.0 + 0 ENSG00000170162.13 protein_coding VGLL2 2 OTTHUMG00000015451.2 +53502 chr6 ENSEMBL gene 117299364 117299638 275.0 + 0 ENSG00000251814.1 misc_RNA RN7SKP18 3 +53503 chr6 ENSEMBL gene 117301455 117301758 304.0 + 0 ENSG00000222713.1 misc_RNA RN7SKP51 3 +53504 chr6 HAVANA gene 117288300 117425855 7856.0 - 0 ENSG00000047936.10 protein_coding ROS1 2 OTTHUMG00000016188.1 overlapping_locus +53505 chr6 HAVANA gene 117431591 117432442 549.0 + 0 ENSG00000219703.1 processed_pseudogene RAP1BP3 1 OTTHUMG00000015452.2 pseudo_consens +53506 chr6 HAVANA gene 117451130 117453525 308.0 - 0 ENSG00000226181.1 antisense AL132671.1 1 OTTHUMG00000015453.1 overlapping_locus +53507 chr6 ENSEMBL gene 117457734 117457838 105.0 - 0 ENSG00000207461.1 snRNA RNU6-253P 3 +53508 chr6 HAVANA gene 117453817 117569858 6819.0 + 0 ENSG00000164465.18 protein_coding DCBLD1 2 OTTHUMG00000015455.3 +53509 chr6 HAVANA gene 117318211 117573571 930.0 - 0 ENSG00000282218.1 protein_coding AL132671.2 2 OTTHUMG00000190739.2 ncRNA_host,overlapping_locus +53510 chr6 HAVANA gene 117560269 117602542 4628.0 - 0 ENSG00000047932.13 protein_coding GOPC 2 OTTHUMG00000015457.2 overlapping_locus +53511 chr6 HAVANA gene 117633706 117645087 1371.0 + 0 ENSG00000218233.1 unitary_pseudogene NEPNP 2 OTTHUMG00000015456.1 +53512 chr6 HAVANA gene 117675502 117710640 4676.0 + 0 ENSG00000153989.7 protein_coding NUS1 2 OTTHUMG00000015458.1 +53513 chr6 HAVANA gene 117998975 117999448 474.0 + 0 ENSG00000230202.1 processed_pseudogene AL450405.1 2 OTTHUMG00000015459.2 overlapping_locus +53514 chr6 HAVANA gene 117907526 118317676 4855.0 + 0 ENSG00000196376.10 protein_coding SLC35F1 2 OTTHUMG00000015460.2 overlapping_locus +53515 chr6 HAVANA gene 118452469 118454992 2524.0 - 0 ENSG00000216809.1 processed_pseudogene AL589993.1 1 OTTHUMG00000015461.1 pseudo_consens +53516 chr6 HAVANA gene 118501430 118502906 1477.0 + 0 ENSG00000169075.7 processed_pseudogene Z99496.1 1 OTTHUMG00000015463.1 pseudo_consens +53517 chr6 HAVANA gene 118548298 118560730 2001.0 + 0 ENSG00000198523.5 protein_coding PLN 2 OTTHUMG00000015462.1 +53518 chr6 HAVANA gene 118589070 118589634 565.0 + 0 ENSG00000217330.1 processed_pseudogene SSXP10 2 OTTHUMG00000016373.1 +53519 chr6 HAVANA gene 118460772 118710075 9462.0 - 0 ENSG00000111860.13 protein_coding CEP85L 1 OTTHUMG00000015465.5 +53520 chr6 HAVANA gene 118757518 118783420 1179.0 + 0 ENSG00000225549.3 transcribed_processed_pseudogene SELENOKP3 1 OTTHUMG00000015466.2 pseudo_consens +53521 chr6 HAVANA gene 118894220 118909167 2517.0 + 0 ENSG00000111875.7 protein_coding ASF1A 2 OTTHUMG00000015470.3 +53522 chr6 HAVANA gene 118813442 118935162 12496.0 - 0 ENSG00000111877.17 protein_coding MCM9 1 OTTHUMG00000015468.6 +53523 chr6 ENSEMBL gene 119057880 119057974 95.0 + 0 ENSG00000222649.1 misc_RNA RF00019 3 +53524 chr6 ENSEMBL gene 119069047 119069143 97.0 - 0 ENSG00000207982.1 miRNA MIR548B 3 +53525 chr6 HAVANA gene 118959763 119149387 7791.0 - 0 ENSG00000111879.19 protein_coding FAM184A 1 OTTHUMG00000015471.7 ncRNA_host +53526 chr6 HAVANA gene 119159297 119159476 180.0 + 0 ENSG00000220139.1 processed_pseudogene AL022722.2 2 OTTHUMG00000016148.1 +53527 chr6 HAVANA gene 118934770 119182745 1812.0 + 0 ENSG00000253194.2 antisense AL137009.1 2 OTTHUMG00000164916.3 ncRNA_host +53528 chr6 HAVANA gene 119269133 119269714 582.0 - 0 ENSG00000216316.1 processed_pseudogene AL022722.1 1 OTTHUMG00000016149.1 pseudo_consens,overlapping_locus +53529 chr6 ENSEMBL gene 119327281 119327385 105.0 + 0 ENSG00000200732.1 snRNA RNU6-194P 3 +53530 chr6 HAVANA gene 119177209 119349761 5014.0 - 0 ENSG00000111885.6 protein_coding MAN1A1 2 OTTHUMG00000015472.1 overlapping_locus +53531 chr6 ENSEMBL gene 120015179 120015257 79.0 + 0 ENSG00000265725.1 miRNA MIR3144 3 +53532 chr6 ENSEMBL gene 120526294 120526400 107.0 - 0 ENSG00000206857.1 snRNA RNU6-214P 3 +53533 chr6 ENSEMBL gene 120686621 120686742 122.0 + 0 ENSG00000200310.1 rRNA_pseudogene RNA5SP215 3 +53534 chr6 HAVANA gene 120781220 120781512 293.0 + 0 ENSG00000216710.1 processed_pseudogene COX6A1P3 1 OTTHUMG00000015473.1 pseudo_consens +53535 chr6 HAVANA gene 121079494 121334745 6912.0 - 0 ENSG00000146350.13 protein_coding TBC1D32 2 OTTHUMG00000015474.5 +53536 chr6 ENSEMBL gene 121354354 121354460 107.0 + 0 ENSG00000206598.1 snRNA RNU6-1286P 3 +53537 chr6 ENSEMBL gene 121378797 121378898 102.0 - 0 ENSG00000207403.1 misc_RNA RF00019 3 +53538 chr6 HAVANA gene 121381472 121381860 389.0 + 0 ENSG00000220447.1 processed_pseudogene AL139098.1 1 OTTHUMG00000015477.2 pseudo_consens +53539 chr6 HAVANA gene 121389324 121390357 381.0 + 0 ENSG00000272714.1 transcribed_unprocessed_pseudogene AL139098.2 2 OTTHUMG00000015478.2 +53540 chr6 HAVANA gene 121435577 121449727 3413.0 + 0 ENSG00000152661.8 protein_coding GJA1 2 OTTHUMG00000015479.2 +53541 chr6 ENSEMBL gene 121453981 121454121 141.0 - 0 ENSG00000199458.1 snRNA RNU4-35P 3 +53542 chr6 HAVANA gene 121478273 121479908 664.0 - 0 ENSG00000219784.2 processed_pseudogene AL138729.1 2 OTTHUMG00000015480.2 +53543 chr6 ENSEMBL gene 121542486 121542626 141.0 - 0 ENSG00000201379.1 snRNA RNU4-76P 3 +53544 chr6 ENSEMBL gene 121580332 121580521 190.0 - 0 ENSG00000222659.1 snRNA RNU2-8P 3 +53545 chr6 HAVANA gene 121641009 121641221 213.0 - 0 ENSG00000220326.2 processed_pseudogene AL603865.2 1 OTTHUMG00000015481.2 pseudo_consens +53546 chr6 HAVANA gene 121653795 121654690 896.0 + 0 ENSG00000218180.2 processed_pseudogene SLC25A5P7 1 OTTHUMG00000015482.2 pseudo_consens +53547 chr6 HAVANA gene 121679972 121680459 488.0 - 0 ENSG00000219135.1 processed_pseudogene RPL23AP48 1 OTTHUMG00000015483.2 pseudo_consens +53548 chr6 HAVANA gene 121682925 121684272 1348.0 + 0 ENSG00000217139.2 processed_pseudogene AL603865.1 1 OTTHUMG00000015484.2 pseudo_consens +53549 chr6 HAVANA gene 121858179 121858768 590.0 - 0 ENSG00000220184.2 processed_pseudogene HMGB3P18 1 OTTHUMG00000015485.2 pseudo_consens +53550 chr6 ENSEMBL gene 122211648 122211811 164.0 + 0 ENSG00000199932.1 snRNA RNU1-18P 3 +53551 chr6 HAVANA gene 122399546 122433119 2702.0 + 0 ENSG00000025156.12 protein_coding HSF2 2 OTTHUMG00000016216.3 +53552 chr6 HAVANA gene 122436789 122439223 2435.0 - 0 ENSG00000279453.1 TEC Z99129.4 2 OTTHUMG00000175939.1 +53553 chr6 HAVANA gene 122454358 122454612 255.0 + 0 ENSG00000275339.1 processed_pseudogene Z99129.1 2 OTTHUMG00000187638.1 +53554 chr6 HAVANA gene 122443354 122471822 3137.0 - 0 ENSG00000111897.6 protein_coding SERINC1 2 OTTHUMG00000015487.2 +53555 chr6 HAVANA gene 122471923 122484161 6430.0 + 0 ENSG00000279114.1 TEC Z99129.3 2 OTTHUMG00000185408.1 overlapping_locus +53556 chr6 HAVANA gene 122531123 122531436 314.0 - 0 ENSG00000277408.1 processed_pseudogene Z99129.2 1 OTTHUMG00000187639.1 pseudo_consens +53557 chr6 HAVANA gene 122643388 122644771 1384.0 + 0 ENSG00000272472.1 sense_intronic AL512283.1 2 OTTHUMG00000185409.1 overlapping_locus +53558 chr6 HAVANA gene 122471917 122726373 3432.0 + 0 ENSG00000135549.14 protein_coding PKIB 2 OTTHUMG00000015488.4 overlapping_locus +53559 chr6 ENSEMBL gene 122745280 122745529 250.0 + 0 ENSG00000240606.3 misc_RNA RN7SL564P 3 +53560 chr6 HAVANA gene 122779475 122784074 2728.0 + 0 ENSG00000164434.11 protein_coding FABP7 2 OTTHUMG00000015489.1 +53561 chr6 HAVANA gene 122789049 122809720 2349.0 + 0 ENSG00000172594.12 protein_coding SMPDL3A 2 OTTHUMG00000015490.1 +53562 chr6 HAVANA gene 122859678 122859988 311.0 - 0 ENSG00000232362.1 processed_pseudogene ATP5MGP2 1 OTTHUMG00000015491.1 pseudo_consens +53563 chr6 HAVANA gene 122975198 122996061 4140.0 - 0 ENSG00000285652.1 bidirectional_promoter_lncRNA AL591428.1 2 OTTHUMG00000192860.1 +53564 chr6 HAVANA gene 122995971 123072927 11485.0 + 0 ENSG00000146352.12 protein_coding CLVS2 2 OTTHUMG00000015495.3 +53565 chr6 HAVANA gene 123389421 123510241 5197.0 + 0 ENSG00000235535.7 antisense TRDN-AS1 2 OTTHUMG00000015496.6 +53566 chr6 HAVANA gene 123519697 123557670 860.0 + 0 ENSG00000285691.1 antisense AL445259.1 2 OTTHUMG00000192926.1 +53567 chr6 HAVANA gene 123216339 123637093 6700.0 - 0 ENSG00000186439.12 protein_coding TRDN 2 OTTHUMG00000015497.2 +53568 chr6 HAVANA gene 123589711 123685323 1362.0 + 0 ENSG00000285941.1 antisense AL133257.1 2 OTTHUMG00000193070.1 +53569 chr6 HAVANA gene 123823240 123829285 649.0 + 0 ENSG00000237321.1 sense_intronic AL354936.1 2 OTTHUMG00000015498.1 overlapping_locus +53570 chr6 HAVANA gene 123804141 124825657 4197.0 + 0 ENSG00000188580.14 protein_coding NKAIN2 2 OTTHUMG00000015500.2 overlapping_locus +53571 chr6 HAVANA gene 124909093 124963039 4507.0 - 0 ENSG00000236548.1 antisense RNF217-AS1 2 OTTHUMG00000015501.1 +53572 chr6 HAVANA gene 124962545 125092633 12779.0 + 0 ENSG00000146373.16 protein_coding RNF217 2 OTTHUMG00000015504.6 +53573 chr6 HAVANA gene 125119049 125264407 7595.0 + 0 ENSG00000111907.20 protein_coding TPD52L1 1 OTTHUMG00000015505.5 +53574 chr6 HAVANA gene 125219962 125302078 5888.0 - 0 ENSG00000111906.17 protein_coding HDDC2 2 OTTHUMG00000015506.3 +53575 chr6 HAVANA gene 125370034 125445183 1586.0 - 0 ENSG00000226409.2 lincRNA AL450332.1 2 OTTHUMG00000015507.2 +53576 chr6 HAVANA gene 125674353 125720218 2963.0 + 0 ENSG00000224506.2 lincRNA LINC02523 2 OTTHUMG00000015509.2 +53577 chr6 HAVANA gene 125578558 125749190 3098.0 - 0 ENSG00000237742.6 antisense AL365259.1 2 OTTHUMG00000015511.2 +53578 chr6 HAVANA gene 125747664 125761269 2741.0 + 0 ENSG00000135547.8 protein_coding HEY2 2 OTTHUMG00000015512.1 +53579 chr6 HAVANA gene 125797856 125818858 501.0 - 0 ENSG00000232131.1 antisense NCOA7-AS1 2 OTTHUMG00000015510.1 +53580 chr6 ENSEMBL gene 125875168 125875498 331.0 + 0 ENSG00000222445.1 misc_RNA RN7SKP56 3 +53581 chr6 HAVANA gene 125781161 125932030 7820.0 + 0 ENSG00000111912.19 protein_coding NCOA7 2 OTTHUMG00000015513.6 ncRNA_host +53582 chr6 ENSEMBL gene 125979812 125979934 123.0 - 0 ENSG00000251920.1 rRNA_pseudogene RNA5SP216 3 +53583 chr6 HAVANA gene 125956781 125980244 3314.0 + 0 ENSG00000111911.6 protein_coding HINT3 2 OTTHUMG00000015514.2 +53584 chr6 HAVANA gene 125986430 126203817 5771.0 + 0 ENSG00000066651.19 protein_coding TRMT11 2 OTTHUMG00000015515.13 +53585 chr6 HAVANA gene 126257921 126258355 435.0 - 0 ENSG00000213133.4 processed_pseudogene PPP1R14BP5 1 OTTHUMG00000015517.2 pseudo_consens +53586 chr6 HAVANA gene 126340174 126348875 795.0 + 0 ENSG00000203760.8 protein_coding CENPW 2 OTTHUMG00000015518.1 +53587 chr6 ENSEMBL gene 126484631 126484713 83.0 + 0 ENSG00000207632.1 miRNA MIR588 3 +53588 chr6 ENSEMBL gene 126590287 126590393 107.0 - 0 ENSG00000201613.1 snRNA RNU6-200P 3 +53589 chr6 HAVANA gene 126602356 126603649 1294.0 - 0 ENSG00000220548.3 processed_pseudogene VIM2P 1 OTTHUMG00000015519.3 pseudo_consens +53590 chr6 HAVANA gene 126627484 126628570 1087.0 - 0 ENSG00000275953.1 processed_pseudogene AL359535.1 1 OTTHUMG00000187640.1 pseudo_consens +53591 chr6 HAVANA gene 126643488 126644390 903.0 + 0 ENSG00000217325.2 transcribed_processed_pseudogene PRELID1P1 1 OTTHUMG00000015520.2 pseudo_consens +53592 chr6 HAVANA gene 126683036 126683847 780.0 + 0 ENSG00000217404.2 processed_pseudogene RPS4XP9 1 OTTHUMG00000016146.2 pseudo_consens +53593 chr6 HAVANA gene 127118604 127197765 3179.0 + 0 ENSG00000146374.13 protein_coding RSPO3 2 OTTHUMG00000015521.1 +53594 chr6 HAVANA gene 127266610 127288567 3508.0 + 0 ENSG00000118518.15 protein_coding RNF146 2 OTTHUMG00000015522.3 +53595 chr6 ENSEMBL gene 127317883 127317973 91.0 - 0 ENSG00000251768.1 rRNA_pseudogene RNA5SP217 3 +53596 chr6 HAVANA gene 127288710 127343609 5678.0 - 0 ENSG00000093144.18 protein_coding ECHDC1 1 OTTHUMG00000015523.5 +53597 chr6 HAVANA gene 127355756 127356789 708.0 + 0 ENSG00000213131.3 processed_pseudogene YWHAZP4 1 OTTHUMG00000015524.2 pseudo_consens +53598 chr6 HAVANA gene 127362513 127363403 891.0 + 0 ENSG00000220744.1 processed_pseudogene RPL5P18 1 OTTHUMG00000015525.1 pseudo_consens +53599 chr6 HAVANA gene 127416535 127416952 418.0 - 0 ENSG00000220522.2 processed_pseudogene AL590002.1 1 OTTHUMG00000015526.2 pseudo_consens +53600 chr6 HAVANA gene 127435636 127436189 554.0 + 0 ENSG00000220694.2 processed_pseudogene AL096711.1 1 OTTHUMG00000015527.2 pseudo_consens +53601 chr6 HAVANA gene 127440343 127459391 7229.0 - 0 ENSG00000189367.14 protein_coding KIAA0408 1 OTTHUMG00000166439.3 overlapping_locus +53602 chr6 HAVANA gene 127438406 127519001 11464.0 - 0 ENSG00000255330.9 protein_coding AL096711.2 1 OTTHUMG00000015528.7 overlapping_locus +53603 chr6 HAVANA gene 127472794 127519191 4325.0 - 0 ENSG00000214338.10 protein_coding SOGA3 2 OTTHUMG00000166438.2 overlapping_locus +53604 chr6 HAVANA gene 127519455 127591817 1530.0 + 0 ENSG00000184530.8 protein_coding C6orf58 2 OTTHUMG00000015530.1 +53605 chr6 HAVANA gene 127632958 127635321 352.0 - 0 ENSG00000219284.2 unprocessed_pseudogene AL592291.1 2 OTTHUMG00000015531.2 +53606 chr6 HAVANA gene 127654860 127655278 419.0 - 0 ENSG00000218187.2 processed_pseudogene AL356432.1 2 OTTHUMG00000015532.2 +53607 chr6 HAVANA gene 127659424 127660338 465.0 + 0 ENSG00000260212.1 unprocessed_pseudogene AL356432.3 2 OTTHUMG00000177314.1 +53608 chr6 HAVANA gene 127659690 127660579 422.0 - 0 ENSG00000219699.2 unprocessed_pseudogene AL356432.2 1 OTTHUMG00000015533.2 pseudo_consens +53609 chr6 HAVANA gene 127664554 127681555 625.0 + 0 ENSG00000281248.1 lincRNA LINC02536 2 OTTHUMG00000190264.1 +53610 chr6 HAVANA gene 127909833 127910052 220.0 + 0 ENSG00000274493.1 processed_pseudogene MRPS17P5 2 OTTHUMG00000187641.1 +53611 chr6 HAVANA gene 127708072 127918631 4309.0 - 0 ENSG00000172673.10 protein_coding THEMIS 2 OTTHUMG00000015534.4 +53612 chr6 HAVANA gene 128027886 128085248 752.0 + 0 ENSG00000227945.1 antisense AL590006.1 2 OTTHUMG00000015535.1 +53613 chr6 HAVANA gene 128500527 128501176 549.0 + 0 ENSG00000224733.1 antisense AL034349.1 2 OTTHUMG00000015540.1 +53614 chr6 HAVANA gene 127968779 128520674 9000.0 - 0 ENSG00000152894.14 protein_coding PTPRK 2 OTTHUMG00000015536.10 overlapping_locus +53615 chr6 HAVANA gene 128580113 128580884 772.0 - 0 ENSG00000213130.3 processed_pseudogene EEF1DP5 1 OTTHUMG00000015541.1 pseudo_consens +53616 chr6 ENSEMBL gene 128584390 128584491 102.0 + 0 ENSG00000206982.1 misc_RNA RF00019 3 +53617 chr6 HAVANA gene 128639188 128639653 466.0 - 0 ENSG00000220110.1 processed_pseudogene AL080315.1 1 OTTHUMG00000015542.1 pseudo_consens +53618 chr6 ENSEMBL gene 128761717 128761808 92.0 - 0 ENSG00000202200.1 misc_RNA RF00019 3 +53619 chr6 HAVANA gene 128928995 128929988 994.0 - 0 ENSG00000220884.2 processed_pseudogene MESTP1 1 OTTHUMG00000015543.2 pseudo_consens +53620 chr6 HAVANA gene 129157523 129159120 1598.0 - 0 ENSG00000219642.2 processed_pseudogene BMPR1AP1 1 OTTHUMG00000015544.2 pseudo_consens +53621 chr6 ENSEMBL gene 129436875 129436980 106.0 - 0 ENSG00000252554.1 snRNA RNU6-861P 3 +53622 chr6 HAVANA gene 129479615 129481410 391.0 - 0 ENSG00000233351.1 antisense AL356124.2 1 OTTHUMG00000015546.1 +53623 chr6 HAVANA gene 128883141 129516569 10094.0 + 0 ENSG00000196569.12 protein_coding LAMA2 2 OTTHUMG00000015545.2 +53624 chr6 HAVANA gene 129526626 129552587 864.0 - 0 ENSG00000226149.5 lincRNA AL356124.1 2 OTTHUMG00000015548.1 +53625 chr6 HAVANA gene 129576132 129710225 4640.0 - 0 ENSG00000146376.10 protein_coding ARHGAP18 2 OTTHUMG00000015547.2 +53626 chr6 HAVANA gene 129756298 129757112 815.0 - 0 ENSG00000218689.2 processed_pseudogene RPL5P21 1 OTTHUMG00000015549.2 pseudo_consens +53627 chr6 HAVANA gene 129783769 129784045 277.0 - 0 ENSG00000219666.2 processed_pseudogene AL451046.2 1 OTTHUMG00000015550.3 pseudo_consens +53628 chr6 HAVANA gene 129800908 129802214 1295.0 + 0 ENSG00000218725.2 processed_pseudogene B3GALNT2P1 1 OTTHUMG00000015551.2 pseudo_consens +53629 chr6 HAVANA gene 129819637 129820170 534.0 - 0 ENSG00000219302.2 processed_pseudogene AL451046.1 1 OTTHUMG00000015552.2 pseudo_consens +53630 chr6 HAVANA gene 129831244 129861547 670.0 - 0 ENSG00000203756.7 protein_coding TMEM244 2 OTTHUMG00000015553.1 +53631 chr6 HAVANA gene 130013699 130141451 5113.0 + 0 ENSG00000198945.7 protein_coding L3MBTL3 2 OTTHUMG00000015554.5 +53632 chr6 HAVANA gene 130133410 130146179 2906.0 - 0 ENSG00000227678.7 antisense AL355581.1 1 OTTHUMG00000015555.4 overlapping_locus +53633 chr6 HAVANA gene 130144315 130365425 6903.0 - 0 ENSG00000164483.16 protein_coding SAMD3 1 OTTHUMG00000015556.7 overlapping_locus +53634 chr6 HAVANA gene 130365734 130443063 6137.0 + 0 ENSG00000164484.11 protein_coding TMEM200A 2 OTTHUMG00000015557.1 +53635 chr6 ENSEMBL gene 130573996 130574112 117.0 - 0 ENSG00000202438.1 misc_RNA RF00019 3 +53636 chr6 HAVANA gene 130697312 130697778 334.0 + 0 ENSG00000229923.2 lincRNA AL583803.1 2 OTTHUMG00000015558.2 +53637 chr6 HAVANA gene 130827406 130837135 2512.0 + 0 ENSG00000256162.2 protein_coding SMLR1 1 OTTHUMG00000176259.1 +53638 chr6 HAVANA gene 130839347 131063322 10320.0 - 0 ENSG00000079819.18 protein_coding EPB41L2 1 OTTHUMG00000015560.11 +53639 chr6 HAVANA gene 131184325 131185486 1162.0 - 0 ENSG00000218857.1 processed_pseudogene AL137222.1 1 OTTHUMG00000015562.1 pseudo_consens +53640 chr6 HAVANA gene 131135666 131283535 4394.0 + 0 ENSG00000118507.16 protein_coding AKAP7 2 OTTHUMG00000015563.5 +53641 chr6 HAVANA gene 131469059 131469536 478.0 + 0 ENSG00000219776.2 processed_pseudogene RPL21P67 1 OTTHUMG00000015564.2 pseudo_consens +53642 chr6 HAVANA gene 131573144 131584332 1965.0 + 0 ENSG00000118520.14 protein_coding ARG1 2 OTTHUMG00000015566.2 +53643 chr6 HAVANA gene 131573966 131628229 7412.0 - 0 ENSG00000112282.17 protein_coding MED23 2 OTTHUMG00000015565.2 +53644 chr6 ENSEMBL gene 131642818 131642966 149.0 - 0 ENSG00000252560.1 snRNA RNU4-18P 3 +53645 chr6 HAVANA gene 131699644 131701401 1758.0 - 0 ENSG00000180658.4 protein_coding OR2A4 2 OTTHUMG00000016316.4 +53646 chr6 HAVANA gene 131708684 131711017 2334.0 - 0 ENSG00000236761.5 protein_coding CTAGE9 2 OTTHUMG00000047966.2 retrogene +53647 chr6 HAVANA gene 131628442 131747418 3885.0 + 0 ENSG00000154269.14 protein_coding ENPP3 2 OTTHUMG00000016292.6 +53648 chr6 HAVANA gene 131780721 131781312 592.0 - 0 ENSG00000216917.2 processed_pseudogene AC005587.1 1 OTTHUMG00000015567.3 pseudo_consens +53649 chr6 ENSEMBL gene 131792172 131792231 60.0 + 0 ENSG00000266807.1 miRNA MIR548H5 3 +53650 chr6 HAVANA gene 131819803 131820091 289.0 - 0 ENSG00000219532.2 processed_pseudogene SELENOKP2 1 OTTHUMG00000015570.2 pseudo_consens +53651 chr6 ENSEMBL gene 131820334 131820653 320.0 + 0 ENSG00000200895.1 misc_RNA RN7SKP245 3 +53652 chr6 HAVANA gene 131825981 131828413 2433.0 - 0 ENSG00000237115.2 processed_pseudogene AL139805.1 1 OTTHUMG00000015571.2 pseudo_consens +53653 chr6 HAVANA gene 131808016 131895155 8294.0 + 0 ENSG00000197594.12 protein_coding ENPP1 2 OTTHUMG00000015572.6 ncRNA_host +53654 chr6 HAVANA gene 131910191 131911527 1337.0 + 0 ENSG00000280058.1 TEC AL117378.2 2 OTTHUMG00000185359.1 overlapping_locus +53655 chr6 HAVANA gene 131901963 131920565 3017.0 + 0 ENSG00000236673.5 lincRNA AL117378.1 2 OTTHUMG00000055854.2 overlapping_locus +53656 chr6 HAVANA gene 131948176 131951373 2339.0 - 0 ENSG00000118523.5 protein_coding CTGF 2 OTTHUMG00000015573.2 +53657 chr6 HAVANA gene 131950946 132077393 495.0 + 0 ENSG00000227220.1 antisense AL133346.1 2 OTTHUMG00000150056.1 +53658 chr6 HAVANA gene 132085084 132099279 746.0 + 0 ENSG00000236166.1 lincRNA AL021408.1 1 OTTHUMG00000055852.2 +53659 chr6 ENSEMBL gene 132115192 132115263 72.0 - 0 ENSG00000265669.1 miRNA MIR548AJ1 3 +53660 chr6 HAVANA gene 132130252 132131795 1544.0 - 0 ENSG00000280155.1 TEC AL021408.2 2 OTTHUMG00000175941.1 +53661 chr6 HAVANA gene 132131915 132169374 4206.0 + 0 ENSG00000228495.1 lincRNA LINC01013 1 OTTHUMG00000015574.3 +53662 chr6 HAVANA gene 132271982 132273332 1351.0 + 0 ENSG00000223912.1 processed_pseudogene EEF1A1P36 1 OTTHUMG00000016340.2 pseudo_consens +53663 chr6 HAVANA gene 132296055 132401545 5293.0 - 0 ENSG00000079931.14 protein_coding MOXD1 1 OTTHUMG00000055853.4 +53664 chr6 HAVANA gene 132445867 132513198 16387.0 - 0 ENSG00000079950.13 protein_coding STX7 2 OTTHUMG00000015577.2 +53665 chr6 HAVANA gene 132518830 132519295 466.0 - 0 ENSG00000225343.1 processed_pseudogene RPL21P66 1 OTTHUMG00000015580.2 pseudo_consens +53666 chr6 HAVANA gene 132538290 132539336 1047.0 + 0 ENSG00000237110.2 protein_coding TAAR9 2 OTTHUMG00000015578.5 +53667 chr6 HAVANA gene 132552693 132553721 1029.0 + 0 ENSG00000146385.1 protein_coding TAAR8 2 OTTHUMG00000015586.2 +53668 chr6 HAVANA gene 132559024 132559265 242.0 + 0 ENSG00000235998.1 unprocessed_pseudogene TAAR7P 2 OTTHUMG00000154716.1 +53669 chr6 HAVANA gene 132570322 132571359 1038.0 + 0 ENSG00000146383.7 protein_coding TAAR6 2 OTTHUMG00000015579.2 +53670 chr6 HAVANA gene 132588673 132589686 1014.0 - 0 ENSG00000135569.4 protein_coding TAAR5 2 OTTHUMG00000015581.2 +53671 chr6 HAVANA gene 132594398 132595436 1039.0 - 0 ENSG00000237449.1 unprocessed_pseudogene TAAR4P 2 OTTHUMG00000015582.1 +53672 chr6 HAVANA gene 132608225 132609302 1078.0 - 0 ENSG00000179073.6 transcribed_unprocessed_pseudogene TAAR3P 2 OTTHUMG00000015584.3 +53673 chr6 HAVANA gene 132617022 132624275 1217.0 - 0 ENSG00000146378.6 protein_coding TAAR2 2 OTTHUMG00000015585.3 +53674 chr6 HAVANA gene 132644984 132646003 1020.0 - 0 ENSG00000146399.1 protein_coding TAAR1 2 OTTHUMG00000015583.2 +53675 chr6 HAVANA gene 132674885 132675383 499.0 + 0 ENSG00000218194.1 processed_pseudogene HLFP1 1 OTTHUMG00000015590.1 pseudo_consens +53676 chr6 HAVANA gene 132698783 132699667 885.0 + 0 ENSG00000218991.1 processed_pseudogene CCNG1P1 1 OTTHUMG00000015591.1 pseudo_consens +53677 chr6 HAVANA gene 132681590 132714049 3106.0 - 0 ENSG00000112299.7 protein_coding VNN1 2 OTTHUMG00000015587.1 +53678 chr6 HAVANA gene 132722787 132734765 3846.0 - 0 ENSG00000093134.14 protein_coding VNN3 1 OTTHUMG00000015589.7 +53679 chr6 HAVANA gene 132752675 132753951 581.0 + 0 ENSG00000234484.1 antisense AL032821.1 2 OTTHUMG00000015592.1 +53680 chr6 HAVANA gene 132743870 132763459 2633.0 - 0 ENSG00000112303.13 protein_coding VNN2 2 OTTHUMG00000015588.6 +53681 chr6 HAVANA gene 132764660 132765458 799.0 + 0 ENSG00000271488.1 processed_pseudogene RBM11P1 1 OTTHUMG00000184398.1 pseudo_consens +53682 chr6 HAVANA gene 132769370 132813339 2760.0 - 0 ENSG00000146409.11 protein_coding SLC18B1 2 OTTHUMG00000015595.5 +53683 chr6 ENSEMBL gene 132815307 132815379 73.0 + 0 ENSG00000206754.1 snoRNA SNORD101 3 +53684 chr6 ENSEMBL gene 132816802 132816877 76.0 + 0 ENSG00000221500.1 snoRNA SNORD100 3 +53685 chr6 ENSEMBL gene 132817219 132817348 130.0 + 0 ENSG00000200534.1 snoRNA SNORA33 3 +53686 chr6 HAVANA gene 132814441 132817564 767.0 + 0 ENSG00000112306.7 protein_coding RPS12 2 OTTHUMG00000015593.3 ncRNA_host +53687 chr6 HAVANA gene 132868218 132868859 642.0 - 0 ENSG00000220557.1 processed_pseudogene HMGB1P13 1 OTTHUMG00000015594.1 pseudo_consens +53688 chr6 HAVANA gene 132891924 132893819 1896.0 + 0 ENSG00000279960.1 TEC AL137783.1 2 OTTHUMG00000175942.1 +53689 chr6 HAVANA gene 132997551 132998040 490.0 - 0 ENSG00000213122.4 processed_pseudogene RPL23AP46 1 OTTHUMG00000015596.2 pseudo_consens +53690 chr6 HAVANA gene 133088080 133106578 2515.0 + 0 ENSG00000231023.6 lincRNA LINC00326 2 OTTHUMG00000015597.2 +53691 chr6 HAVANA gene 133150568 133150816 249.0 + 0 ENSG00000220113.2 processed_pseudogene MTCYBP4 2 OTTHUMG00000015598.2 +53692 chr6 HAVANA gene 133435077 133439464 631.0 - 0 ENSG00000223542.1 antisense AL024497.1 1 OTTHUMG00000015601.1 +53693 chr6 HAVANA gene 133452857 133456605 317.0 - 0 ENSG00000234567.1 antisense AL024497.2 2 OTTHUMG00000015600.1 +53694 chr6 HAVANA gene 133510386 133510693 308.0 - 0 ENSG00000238059.1 processed_pseudogene HSPE1P21 1 OTTHUMG00000015603.1 pseudo_consens,overlapping_locus +53695 chr6 HAVANA gene 133240598 133532120 8968.0 + 0 ENSG00000112319.18 protein_coding EYA4 1 OTTHUMG00000015602.7 +53696 chr6 HAVANA gene 133540784 133541174 391.0 + 0 ENSG00000272428.1 lincRNA AL450270.1 2 OTTHUMG00000185821.1 +53697 chr6 HAVANA gene 133676729 133677429 701.0 - 0 ENSG00000218213.1 processed_pseudogene FTH1P26 1 OTTHUMG00000015605.1 pseudo_consens,overlapping_locus +53698 chr6 HAVANA gene 133821147 133851800 1364.0 + 0 ENSG00000223586.5 lincRNA LINC01312 2 OTTHUMG00000015606.1 +53699 chr6 HAVANA gene 133502252 133892802 7862.0 - 0 ENSG00000227954.6 antisense TARID 2 OTTHUMG00000015607.3 overlapping_locus +53700 chr6 HAVANA gene 133889138 133895553 4551.0 + 0 ENSG00000118526.6 protein_coding TCF21 2 OTTHUMG00000015608.2 +53701 chr6 HAVANA gene 133952170 133990432 5039.0 + 0 ENSG00000028839.9 protein_coding TBPL1 2 OTTHUMG00000015609.5 +53702 chr6 HAVANA gene 134009033 134009218 186.0 + 0 ENSG00000278744.1 processed_pseudogene AL449363.1 1 OTTHUMG00000187662.1 pseudo_consens +53703 chr6 HAVANA gene 133988697 134052636 4468.0 - 0 ENSG00000146411.5 protein_coding SLC2A12 2 OTTHUMG00000015611.1 +53704 chr6 HAVANA gene 134115235 134115736 502.0 - 0 ENSG00000216753.3 processed_pseudogene HMGA1P7 2 OTTHUMG00000015610.3 +53705 chr6 ENSEMBL gene 134133573 134133868 296.0 + 0 ENSG00000266875.2 misc_RNA RN7SL408P 3 +53706 chr6 HAVANA gene 134211450 134211527 78.0 + 0 ENSG00000276703.1 processed_pseudogene RPS29P32 1 OTTHUMG00000187663.1 pseudo_consens +53707 chr6 ENSEMBL gene 134257035 134257143 109.0 + 0 ENSG00000200058.1 rRNA_pseudogene RNA5SP218 3 +53708 chr6 ENSEMBL gene 134283092 134283193 102.0 + 0 ENSG00000201309.1 misc_RNA RF00019 3 +53709 chr6 HAVANA gene 134296997 134298695 1399.0 - 0 ENSG00000220378.3 processed_pseudogene KRT8P42 1 OTTHUMG00000015612.3 pseudo_consens,overlapping_locus +53710 chr6 HAVANA gene 134169246 134318112 9992.0 - 0 ENSG00000118515.11 protein_coding SGK1 2 OTTHUMG00000015613.5 overlapping_locus +53711 chr6 HAVANA gene 134393142 134393900 434.0 - 0 ENSG00000213118.4 processed_pseudogene CHCHD2P4 1 OTTHUMG00000015614.2 pseudo_consens +53712 chr6 HAVANA gene 134437716 134504581 2583.0 + 0 ENSG00000236700.5 lincRNA LINC01010 2 OTTHUMG00000015616.1 +53713 chr6 HAVANA gene 134428240 134520585 1731.0 - 0 ENSG00000231971.5 lincRNA AL078590.2 2 OTTHUMG00000015617.1 overlapping_locus +53714 chr6 HAVANA gene 134603564 134604698 1135.0 - 0 ENSG00000218772.2 processed_pseudogene FAM8A6P 1 OTTHUMG00000015615.3 pseudo_consens,overlapping_locus +53715 chr6 HAVANA gene 134606299 134609437 479.0 - 0 ENSG00000229722.1 lincRNA AL078590.1 1 OTTHUMG00000015618.1 overlapping_locus +53716 chr6 HAVANA gene 134636489 134642495 370.0 + 0 ENSG00000227723.1 lincRNA AL596188.1 1 OTTHUMG00000015619.1 +53717 chr6 HAVANA gene 134520163 134673960 3342.0 - 0 ENSG00000232310.7 lincRNA AL078590.3 2 OTTHUMG00000015620.4 overlapping_locus +53718 chr6 HAVANA gene 134706060 134707349 929.0 - 0 ENSG00000236389.1 lincRNA AL121970.1 2 OTTHUMG00000015621.1 +53719 chr6 HAVANA gene 134897874 134898759 886.0 + 0 ENSG00000213117.4 processed_pseudogene AL021939.1 1 OTTHUMG00000015622.2 pseudo_consens +53720 chr6 HAVANA gene 134941392 134942450 288.0 + 0 ENSG00000240056.2 antisense AL445190.1 2 OTTHUMG00000015624.2 +53721 chr6 HAVANA gene 134917390 134950122 2868.0 - 0 ENSG00000118514.13 protein_coding ALDH8A1 1 OTTHUMG00000015623.4 +53722 chr6 ENSEMBL gene 134979338 134979432 95.0 - 0 ENSG00000283409.1 miRNA MIR3662 3 +53723 chr6 HAVANA gene 135055033 135060550 790.0 + 0 ENSG00000232876.1 antisense AL353596.1 1 OTTHUMG00000015625.1 +53724 chr6 HAVANA gene 134960378 135103056 11099.0 - 0 ENSG00000112339.14 protein_coding HBS1L 1 OTTHUMG00000015626.5 ncRNA_host +53725 chr6 HAVANA gene 135195083 135195995 449.0 - 0 ENSG00000236703.1 antisense MYB-AS1 2 OTTHUMG00000015627.2 +53726 chr6 HAVANA gene 135181315 135219173 5493.0 + 0 ENSG00000118513.18 protein_coding MYB 1 OTTHUMG00000015629.10 +53727 chr6 ENSEMBL gene 135239160 135239256 97.0 + 0 ENSG00000207689.1 miRNA MIR548A2 3 +53728 chr6 HAVANA gene 135259996 135260933 216.0 + 0 ENSG00000224374.1 antisense AL023693.1 2 OTTHUMG00000015628.1 +53729 chr6 HAVANA gene 135301568 135307158 577.0 + 0 ENSG00000234084.1 antisense AL049552.1 2 OTTHUMG00000015630.2 +53730 chr6 ENSEMBL gene 135474504 135474609 106.0 - 0 ENSG00000201012.1 misc_RNA RF00019 3 +53731 chr6 HAVANA gene 135283532 135497776 8705.0 - 0 ENSG00000135541.20 protein_coding AHI1 1 OTTHUMG00000015631.8 ncRNA_host +53732 chr6 HAVANA gene 135619165 135620171 1007.0 - 0 ENSG00000226540.2 processed_pseudogene GAPDHP73 1 OTTHUMG00000015633.2 pseudo_consens +53733 chr6 HAVANA gene 135628789 135634681 1158.0 - 0 ENSG00000233534.2 lincRNA AL035604.1 1 OTTHUMG00000015634.2 +53734 chr6 HAVANA gene 135636086 135636713 628.0 - 0 ENSG00000217482.2 processed_pseudogene HMGB1P17 1 OTTHUMG00000015635.2 pseudo_consens +53735 chr6 HAVANA gene 135497801 135716055 3825.0 + 0 ENSG00000231028.8 lincRNA LINC00271 2 OTTHUMG00000015632.2 +53736 chr6 HAVANA gene 135807148 135808466 777.0 - 0 ENSG00000236378.1 lincRNA AL133319.1 1 OTTHUMG00000015637.1 +53737 chr6 HAVANA gene 136034553 136034886 334.0 - 0 ENSG00000213111.5 transcribed_processed_pseudogene COX5BP2 1 OTTHUMG00000015638.3 pseudo_consens,overlapping_locus +53738 chr6 HAVANA gene 135851696 136195574 5946.0 + 0 ENSG00000171408.13 protein_coding PDE7B 2 OTTHUMG00000015641.1 +53739 chr6 HAVANA gene 136206478 136206860 383.0 + 0 ENSG00000277973.1 processed_pseudogene AL138828.2 1 OTTHUMG00000187643.1 pseudo_consens +53740 chr6 HAVANA gene 135991936 136225751 6585.0 - 0 ENSG00000237596.6 antisense AL138828.1 2 OTTHUMG00000015640.5 overlapping_locus +53741 chr6 HAVANA gene 136231024 136250335 2450.0 - 0 ENSG00000146410.11 protein_coding MTFR2 2 OTTHUMG00000015643.4 +53742 chr6 HAVANA gene 136256627 136289851 9533.0 - 0 ENSG00000029363.16 protein_coding BCLAF1 1 OTTHUMG00000033323.7 +53743 chr6 HAVANA gene 136317961 136318236 276.0 + 0 ENSG00000216519.2 processed_pseudogene AL023284.1 1 OTTHUMG00000016407.2 pseudo_consens +53744 chr6 HAVANA gene 136335714 136336087 374.0 - 0 ENSG00000260418.1 lincRNA AL023284.4 2 OTTHUMG00000175943.1 +53745 chr6 HAVANA gene 136364129 136365079 833.0 + 0 ENSG00000220660.2 transcribed_processed_pseudogene AL023284.3 1 OTTHUMG00000016410.2 pseudo_consens +53746 chr6 HAVANA gene 136419847 136420425 579.0 - 0 ENSG00000216613.2 processed_pseudogene AL023284.2 1 OTTHUMG00000015644.3 pseudo_consens,overlapping_locus +53747 chr6 HAVANA gene 136475862 136476150 289.0 - 0 ENSG00000218424.2 processed_pseudogene NDUFS5P1 1 OTTHUMG00000016412.2 pseudo_consens,overlapping_locus +53748 chr6 ENSEMBL gene 136545192 136545492 301.0 + 0 ENSG00000271765.1 misc_RNA RN7SKP299 3 +53749 chr6 HAVANA gene 136342281 136550819 5447.0 - 0 ENSG00000135525.18 protein_coding MAP7 2 OTTHUMG00000015646.3 overlapping_locus +53750 chr6 HAVANA gene 136550661 136552554 1894.0 + 0 ENSG00000272189.1 antisense AL024508.2 2 OTTHUMG00000185823.1 +53751 chr6 ENSEMBL gene 136630243 136630355 113.0 + 0 ENSG00000212242.1 rRNA_pseudogene RNA5SP219 3 +53752 chr6 HAVANA gene 136629172 136647999 505.0 + 0 ENSG00000234263.1 antisense AL024508.1 2 OTTHUMG00000015645.1 +53753 chr6 HAVANA gene 136557047 136792518 5303.0 - 0 ENSG00000197442.9 protein_coding MAP3K5 2 OTTHUMG00000015647.1 +53754 chr6 ENSEMBL gene 136855698 136855831 134.0 - 0 ENSG00000201807.1 snoRNA RF00443 3 +53755 chr6 HAVANA gene 136900233 136901529 1297.0 - 0 ENSG00000213109.4 transcribed_processed_pseudogene AL365223.1 1 OTTHUMG00000015648.2 pseudo_consens +53756 chr6 HAVANA gene 136822564 136913937 1835.0 + 0 ENSG00000112357.12 protein_coding PEX7 2 OTTHUMG00000015650.2 +53757 chr6 HAVANA gene 136922264 136925639 2359.0 + 0 ENSG00000182747.4 protein_coding SLC35D3 2 OTTHUMG00000015651.2 +53758 chr6 ENSEMBL gene 136934765 136934866 102.0 + 0 ENSG00000207247.1 misc_RNA RF00019 3 +53759 chr6 HAVANA gene 136973930 136974217 288.0 - 0 ENSG00000230350.1 processed_pseudogene RPL35AP3 1 OTTHUMG00000015649.2 pseudo_consens +53760 chr6 HAVANA gene 136982165 136993234 1357.0 - 0 ENSG00000225391.5 lincRNA NHEG1 2 OTTHUMG00000015652.1 +53761 chr6 HAVANA gene 136995170 136999504 384.0 + 0 ENSG00000235399.1 antisense AL135902.1 2 OTTHUMG00000015653.1 +53762 chr6 HAVANA gene 136999971 137045180 4730.0 - 0 ENSG00000016402.13 protein_coding IL20RA 2 OTTHUMG00000015654.2 +53763 chr6 HAVANA gene 137143820 137173648 2897.0 - 0 ENSG00000164485.14 protein_coding IL22RA2 2 OTTHUMG00000015655.2 +53764 chr6 HAVANA gene 137197484 137219449 2571.0 - 0 ENSG00000027697.14 protein_coding IFNGR1 2 OTTHUMG00000015656.4 +53765 chr6 HAVANA gene 137492202 137494250 2049.0 - 0 ENSG00000177468.6 protein_coding OLIG3 2 OTTHUMG00000015657.1 +53766 chr6 HAVANA gene 137543897 137544372 476.0 - 0 ENSG00000213108.3 processed_pseudogene BTF3L4P3 1 OTTHUMG00000015658.1 pseudo_consens +53767 chr6 HAVANA gene 137693068 137700415 1160.0 + 0 ENSG00000283265.1 lincRNA AL356234.3 2 OTTHUMG00000191626.1 +53768 chr6 HAVANA gene 137705423 137707201 1779.0 - 0 ENSG00000220412.1 processed_pseudogene AL356234.1 1 OTTHUMG00000015660.1 pseudo_consens +53769 chr6 HAVANA gene 137657998 137763984 2312.0 + 0 ENSG00000230533.3 lincRNA AL356234.2 1 OTTHUMG00000015659.3 +53770 chr6 ENSEMBL gene 137784374 137784486 113.0 + 0 ENSG00000207300.1 misc_RNA RF00019 3 +53771 chr6 HAVANA gene 137730170 137792835 950.0 - 0 ENSG00000234956.6 lincRNA LINC02539 1 OTTHUMG00000015661.2 +53772 chr6 HAVANA gene 137823673 137868233 4088.0 - 0 ENSG00000237499.6 antisense AL357060.1 1 OTTHUMG00000015663.3 +53773 chr6 HAVANA gene 137867188 137883312 5051.0 + 0 ENSG00000118503.14 protein_coding TNFAIP3 2 OTTHUMG00000015664.2 +53774 chr6 HAVANA gene 137943079 137945802 573.0 - 0 ENSG00000226004.1 lincRNA AL591468.1 1 OTTHUMG00000015665.1 +53775 chr6 HAVANA gene 137945366 137972522 815.0 + 0 ENSG00000229922.5 lincRNA LINC02528 2 OTTHUMG00000015667.1 +53776 chr6 HAVANA gene 137995270 137996147 878.0 + 0 ENSG00000219463.1 processed_pseudogene RPSAP42 1 OTTHUMG00000015666.1 pseudo_consens +53777 chr6 HAVANA gene 138088505 138107511 4290.0 - 0 ENSG00000112378.11 protein_coding PERP 2 OTTHUMG00000015668.2 +53778 chr6 HAVANA gene 138215986 138218491 2506.0 - 0 ENSG00000254440.3 protein_coding PBOV1 2 OTTHUMG00000167040.1 +53779 chr6 HAVANA gene 138161921 138344663 14877.0 + 0 ENSG00000112379.8 protein_coding ARFGEF3 2 OTTHUMG00000015670.4 +53780 chr6 HAVANA gene 138377905 138383075 855.0 + 0 ENSG00000262543.1 protein_coding SMIM28 2 OTTHUMG00000172823.2 +53781 chr6 HAVANA gene 138393373 138393544 172.0 + 0 ENSG00000218499.1 processed_pseudogene AL031003.1 1 OTTHUMG00000015673.1 pseudo_consens +53782 chr6 HAVANA gene 138402585 138403560 976.0 - 0 ENSG00000215878.3 processed_pseudogene MARCKSL1P2 1 OTTHUMG00000015672.2 pseudo_consens +53783 chr6 HAVANA gene 138403531 138422197 10356.0 + 0 ENSG00000051620.10 protein_coding HEBP2 2 OTTHUMG00000015671.3 +53784 chr6 ENSEMBL gene 138435213 138435294 82.0 - 0 ENSG00000266555.1 miRNA MIR3145 3 +53785 chr6 HAVANA gene 138464099 138464383 285.0 + 0 ENSG00000274594.1 processed_pseudogene AL391669.1 1 OTTHUMG00000187661.1 pseudo_consens +53786 chr6 HAVANA gene 138650226 138650973 748.0 - 0 ENSG00000216802.1 processed_pseudogene AL590617.1 1 OTTHUMG00000015675.1 pseudo_consens,overlapping_locus +53787 chr6 HAVANA gene 138422043 138692571 8741.0 - 0 ENSG00000135540.11 protein_coding NHSL1 1 OTTHUMG00000016321.3 ncRNA_host,overlapping_locus +53788 chr6 HAVANA gene 138692548 138697288 1220.0 + 0 ENSG00000225177.5 antisense FLJ46906 2 OTTHUMG00000015677.1 +53789 chr6 HAVANA gene 138725211 138773652 2993.0 - 0 ENSG00000279968.2 protein_coding GVQW2 2 OTTHUMG00000189248.2 +53790 chr6 HAVANA gene 138773509 138793319 1507.0 + 0 ENSG00000024862.17 protein_coding CCDC28A 2 OTTHUMG00000015683.3 +53791 chr6 HAVANA gene 138822747 138823799 1053.0 + 0 ENSG00000225415.2 processed_pseudogene CCRL1P1 2 OTTHUMG00000015678.1 overlapping_locus +53792 chr6 HAVANA gene 138878899 138879407 509.0 - 0 ENSG00000220600.2 transcribed_processed_pseudogene AL121834.1 1 OTTHUMG00000015681.2 pseudo_consens +53793 chr6 HAVANA gene 138795926 138904070 4624.0 + 0 ENSG00000203734.11 protein_coding ECT2L 2 OTTHUMG00000015679.7 overlapping_locus +53794 chr6 HAVANA gene 138903493 138988261 9602.0 - 0 ENSG00000135597.18 protein_coding REPS1 1 OTTHUMG00000015685.6 +53795 chr6 HAVANA gene 139028682 139043302 1200.0 + 0 ENSG00000146386.7 protein_coding ABRACL 2 OTTHUMG00000015684.1 +53796 chr6 HAVANA gene 139135112 139180802 5614.0 + 0 ENSG00000112406.4 protein_coding HECA 2 OTTHUMG00000015686.1 +53797 chr6 HAVANA gene 139144204 139239653 4685.0 - 0 ENSG00000231329.8 processed_transcript AL031772.1 2 OTTHUMG00000015687.4 overlapping_locus +53798 chr6 HAVANA gene 139159157 139277181 1894.0 - 0 ENSG00000272446.5 processed_transcript AL158850.1 2 OTTHUMG00000185399.2 overlapping_locus +53799 chr6 HAVANA gene 139240061 139292139 4937.0 - 0 ENSG00000164440.14 protein_coding TXLNB 2 OTTHUMG00000015688.2 overlapping_locus +53800 chr6 HAVANA gene 139338018 139339580 1473.0 + 0 ENSG00000218565.2 processed_pseudogene AL592429.1 1 OTTHUMG00000015692.3 pseudo_consens +53801 chr6 HAVANA gene 139371807 139374620 2535.0 - 0 ENSG00000164442.9 protein_coding CITED2 2 OTTHUMG00000015691.2 +53802 chr6 HAVANA gene 139468995 139474596 1690.0 - 0 ENSG00000238099.2 lincRNA LINC01625 2 OTTHUMG00000015693.2 +53803 chr6 HAVANA gene 139614438 139615204 767.0 - 0 ENSG00000219806.1 processed_pseudogene ATP5PBP6 1 OTTHUMG00000015695.1 pseudo_consens +53804 chr6 HAVANA gene 139659928 139661513 1586.0 + 0 ENSG00000205695.3 processed_pseudogene AL390205.1 1 OTTHUMG00000015696.2 pseudo_consens +53805 chr6 HAVANA gene 139271362 139667284 4851.0 + 0 ENSG00000226571.2 antisense AL592429.2 2 OTTHUMG00000015689.2 +53806 chr6 HAVANA gene 139677639 139860476 1912.0 + 0 ENSG00000231426.6 lincRNA FILNC1 2 OTTHUMG00000015697.2 +53807 chr6 HAVANA gene 139856104 139877391 786.0 - 0 ENSG00000225148.1 lincRNA AL050338.1 2 OTTHUMG00000015698.1 +53808 chr6 HAVANA gene 139976352 140093721 2137.0 + 0 ENSG00000236013.6 lincRNA AL357146.1 2 OTTHUMG00000015699.2 +53809 chr6 ENSEMBL gene 140158591 140158694 104.0 - 0 ENSG00000252107.1 rRNA_pseudogene RNA5SP220 3 +53810 chr6 ENSEMBL gene 140205252 140205326 75.0 + 0 ENSG00000263514.1 miRNA MIR3668 3 +53811 chr6 ENSEMBL gene 140683814 140683883 70.0 + 0 ENSG00000264390.1 miRNA MIR4465 3 +53812 chr6 HAVANA gene 140761529 140762262 734.0 + 0 ENSG00000217684.2 processed_pseudogene RPS3AP24 1 OTTHUMG00000015701.2 pseudo_consens +53813 chr6 HAVANA gene 140845958 140852924 453.0 - 0 ENSG00000234147.1 lincRNA AL035446.1 2 OTTHUMG00000015700.1 overlapping_locus +53814 chr6 HAVANA gene 140575788 140898381 1235.0 - 0 ENSG00000285875.1 lincRNA AL035446.2 2 OTTHUMG00000193223.1 overlapping_locus +53815 chr6 HAVANA gene 140922457 140922910 454.0 - 0 ENSG00000216548.2 processed_pseudogene AL357084.1 1 OTTHUMG00000015702.2 pseudo_consens +53816 chr6 HAVANA gene 141019788 141020026 239.0 - 0 ENSG00000275138.1 processed_pseudogene AL357080.1 1 OTTHUMG00000187723.1 pseudo_consens +53817 chr6 HAVANA gene 141447011 141451006 3996.0 + 0 ENSG00000259828.1 lincRNA AL355596.1 2 OTTHUMG00000175944.1 +53818 chr6 ENSEMBL gene 141486141 141486412 272.0 - 0 ENSG00000222764.1 misc_RNA RN7SKP106 3 +53819 chr6 HAVANA gene 141635650 141636503 854.0 - 0 ENSG00000218351.2 transcribed_processed_pseudogene RPS3AP23 1 OTTHUMG00000015703.2 pseudo_consens +53820 chr6 HAVANA gene 142062717 142063053 337.0 + 0 ENSG00000270983.1 processed_pseudogene AL589674.1 1 OTTHUMG00000184389.1 pseudo_consens +53821 chr6 HAVANA gene 142058330 142088799 1576.0 - 0 ENSG00000135577.4 protein_coding NMBR 2 OTTHUMG00000015704.1 +53822 chr6 HAVANA gene 142088233 142089219 222.0 + 0 ENSG00000236822.1 antisense NMBR-AS1 2 OTTHUMG00000015705.1 +53823 chr6 HAVANA gene 142133090 142135151 916.0 + 0 ENSG00000203733.5 protein_coding GJE1 2 OTTHUMG00000015706.2 +53824 chr6 HAVANA gene 142147162 142224689 7262.0 + 0 ENSG00000009844.15 protein_coding VTA1 2 OTTHUMG00000015707.3 +53825 chr6 HAVANA gene 142251847 142259632 349.0 - 0 ENSG00000237494.1 lincRNA AL360007.1 2 OTTHUMG00000015708.1 +53826 chr6 HAVANA gene 142301854 142446266 8473.0 + 0 ENSG00000112414.14 protein_coding ADGRG6 2 OTTHUMG00000015709.5 +53827 chr6 HAVANA gene 142526455 142637889 2530.0 - 0 ENSG00000236366.2 lincRNA AL359313.1 2 OTTHUMG00000015712.2 +53828 chr6 HAVANA gene 142748443 142753759 349.0 + 0 ENSG00000233138.1 antisense AL023584.1 2 OTTHUMG00000015715.1 +53829 chr6 HAVANA gene 142788123 142794086 444.0 + 0 ENSG00000237851.1 lincRNA AL023584.2 2 OTTHUMG00000015714.1 +53830 chr6 HAVANA gene 142950211 142956646 554.0 + 0 ENSG00000232618.1 lincRNA AL355304.1 2 OTTHUMG00000015716.1 +53831 chr6 HAVANA gene 142751467 142956698 10682.0 - 0 ENSG00000010818.9 protein_coding HIVEP2 2 OTTHUMG00000015713.2 +53832 chr6 HAVANA gene 142966421 143038077 2484.0 - 0 ENSG00000229017.6 lincRNA LINC01277 2 OTTHUMG00000015718.2 +53833 chr6 HAVANA gene 143039425 143042324 552.0 - 0 ENSG00000227192.1 lincRNA AL023581.2 1 OTTHUMG00000015720.1 +53834 chr6 HAVANA gene 143094034 143099645 455.0 - 0 ENSG00000225752.1 antisense AL023581.1 1 OTTHUMG00000015719.1 +53835 chr6 HAVANA gene 143298770 143299554 785.0 - 0 ENSG00000217495.2 processed_pseudogene AL136116.2 1 OTTHUMG00000015722.2 pseudo_consens +53836 chr6 HAVANA gene 143327275 143327655 381.0 + 0 ENSG00000216642.1 processed_pseudogene AL136116.1 1 OTTHUMG00000015723.2 pseudo_consens,overlapping_locus +53837 chr6 HAVANA gene 143060496 143340304 6016.0 + 0 ENSG00000146416.18 protein_coding AIG1 2 OTTHUMG00000015721.8 overlapping_locus +53838 chr6 HAVANA gene 143342246 143343383 1138.0 + 0 ENSG00000217648.1 processed_pseudogene AL136116.3 1 OTTHUMG00000015724.1 pseudo_consens +53839 chr6 HAVANA gene 143386581 143387409 357.0 + 0 ENSG00000270655.1 processed_pseudogene AL031320.1 2 OTTHUMG00000184388.1 +53840 chr6 HAVANA gene 143436216 143436710 495.0 + 0 ENSG00000218896.1 processed_pseudogene TUBB8P2 2 OTTHUMG00000015726.1 +53841 chr6 ENSEMBL gene 143449809 143449911 103.0 + 0 ENSG00000223203.1 rRNA_pseudogene RNA5SP221 3 +53842 chr6 HAVANA gene 143422832 143450673 7175.0 - 0 ENSG00000189007.15 protein_coding ADAT2 2 OTTHUMG00000015725.2 +53843 chr6 HAVANA gene 143450807 143490010 2222.0 + 0 ENSG00000034693.14 protein_coding PEX3 1 OTTHUMG00000015730.3 overlapping_locus +53844 chr6 HAVANA gene 143490424 143506406 5136.0 + 0 ENSG00000229036.7 transcribed_processed_pseudogene VDAC1P8 1 OTTHUMG00000015727.2 pseudo_consens,overlapping_locus +53845 chr6 HAVANA gene 143484979 143507327 2079.0 + 0 ENSG00000278206.1 processed_transcript AL031320.2 2 OTTHUMG00000188641.1 overlapping_locus +53846 chr6 HAVANA gene 143494811 143511690 2793.0 - 0 ENSG00000001036.13 protein_coding FUCA2 2 OTTHUMG00000015728.2 +53847 chr6 HAVANA gene 143554325 143562031 1699.0 - 0 ENSG00000235740.1 antisense PHACTR2-AS1 2 OTTHUMG00000015731.1 +53848 chr6 HAVANA gene 143536845 143831185 11224.0 + 0 ENSG00000112419.14 protein_coding PHACTR2 1 OTTHUMG00000015732.4 overlapping_locus +53849 chr6 HAVANA gene 143807092 143844617 762.0 + 0 ENSG00000257065.1 protein_coding AL049844.1 2 OTTHUMG00000167907.1 overlapping_locus +53850 chr6 HAVANA gene 143858062 143858689 628.0 - 0 ENSG00000270890.1 processed_pseudogene AL049844.2 1 OTTHUMG00000184579.1 pseudo_consens +53851 chr6 HAVANA gene 143843344 143863812 1847.0 + 0 ENSG00000135521.8 protein_coding LTV1 2 OTTHUMG00000015733.1 overlapping_locus +53852 chr6 HAVANA gene 143864436 143938356 1085.0 + 0 ENSG00000118491.9 protein_coding ZC2HC1B 2 OTTHUMG00000015734.2 overlapping_locus +53853 chr6 HAVANA gene 143857318 143938471 1496.0 + 0 ENSG00000280148.1 protein_coding AL049844.3 2 OTTHUMG00000189261.1 overlapping_locus +53854 chr6 ENSEMBL gene 144007227 144007464 238.0 + 0 ENSG00000276680.1 misc_RNA RF02143 3 +53855 chr6 HAVANA gene 144004916 144008262 3347.0 - 0 ENSG00000283122.1 sense_overlapping HYMAI 2 OTTHUMG00000189750.2 overlapping_locus +53856 chr6 HAVANA gene 144036618 144037704 649.0 + 0 ENSG00000217231.2 processed_pseudogene AL109755.1 1 OTTHUMG00000015735.3 pseudo_consens +53857 chr6 HAVANA gene 143940300 144064599 8719.0 - 0 ENSG00000118495.19 protein_coding PLAGL1 2 OTTHUMG00000015738.5 overlapping_locus +53858 chr6 HAVANA gene 144094881 144095573 693.0 - 0 ENSG00000169976.6 protein_coding SF3B5 2 OTTHUMG00000015737.1 +53859 chr6 HAVANA gene 144136450 144136775 326.0 + 0 ENSG00000219297.1 processed_pseudogene MRPL42P3 1 OTTHUMG00000015736.1 pseudo_consens +53860 chr6 HAVANA gene 144150526 144188370 1926.0 + 0 ENSG00000135604.9 protein_coding STX11 2 OTTHUMG00000015739.1 +53861 chr6 HAVANA gene 144200447 144200965 519.0 - 0 ENSG00000217027.1 processed_pseudogene TPT1P4 1 OTTHUMG00000015740.1 pseudo_consens +53862 chr6 HAVANA gene 144257034 144257624 591.0 - 0 ENSG00000216475.1 processed_pseudogene AL024474.1 1 OTTHUMG00000015741.1 pseudo_consens +53863 chr6 HAVANA gene 144311699 144333301 501.0 - 0 ENSG00000225311.1 antisense AL024474.2 2 OTTHUMG00000015742.1 +53864 chr6 HAVANA gene 144397959 144398752 794.0 + 0 ENSG00000219409.2 processed_pseudogene AL590704.1 1 OTTHUMG00000015743.3 pseudo_consens,overlapping_locus +53865 chr6 HAVANA gene 144706733 144707047 315.0 - 0 ENSG00000217195.1 processed_pseudogene AL513475.1 2 OTTHUMG00000015744.1 +53866 chr6 HAVANA gene 144708106 144708497 392.0 - 0 ENSG00000220739.2 processed_pseudogene AL513475.2 1 OTTHUMG00000015745.2 pseudo_consens +53867 chr6 HAVANA gene 144285701 144853034 14604.0 + 0 ENSG00000152818.18 protein_coding UTRN 2 OTTHUMG00000015746.6 overlapping_locus +53868 chr6 HAVANA gene 145296545 145311092 3847.0 + 0 ENSG00000285598.1 lincRNA AL023283.1 2 OTTHUMG00000192799.1 +53869 chr6 ENSEMBL gene 145463238 145463399 162.0 - 0 ENSG00000201119.1 snRNA RNU1-33P 3 +53870 chr6 HAVANA gene 145489630 145492092 1879.0 - 0 ENSG00000217612.2 processed_pseudogene AL031119.1 2 OTTHUMG00000016100.2 +53871 chr6 HAVANA gene 145382535 145736023 18617.0 - 0 ENSG00000112425.14 protein_coding EPM2A 2 OTTHUMG00000015747.8 ncRNA_host +53872 chr6 HAVANA gene 145736911 145737173 263.0 - 0 ENSG00000270828.1 lincRNA AL023806.2 2 OTTHUMG00000184941.1 +53873 chr6 HAVANA gene 145735570 145737218 1649.0 + 0 ENSG00000270638.1 lincRNA AL023806.1 2 OTTHUMG00000184940.1 +53874 chr6 HAVANA gene 145789270 145791973 2704.0 - 0 ENSG00000280184.2 TEC AL023806.3 2 OTTHUMG00000192184.1 +53875 chr6 HAVANA gene 145793502 145814753 9009.0 - 0 ENSG00000118496.4 protein_coding FBXO30 2 OTTHUMG00000015749.2 +53876 chr6 HAVANA gene 145799409 145886585 6116.0 + 0 ENSG00000235652.7 antisense AL356599.1 2 OTTHUMG00000015748.4 +53877 chr6 HAVANA gene 145864245 145964423 17637.0 - 0 ENSG00000146414.15 protein_coding SHPRH 2 OTTHUMG00000015750.3 +53878 chr6 HAVANA gene 146171315 146171847 533.0 + 0 ENSG00000187103.3 processed_pseudogene FUNDC2P3 1 OTTHUMG00000015751.3 pseudo_consens,overlapping_locus +53879 chr6 ENSEMBL gene 146340420 146340524 105.0 + 0 ENSG00000222971.1 rRNA_pseudogene RNA5SP222 3 +53880 chr6 HAVANA gene 146364931 146365494 564.0 - 0 ENSG00000216811.2 processed_pseudogene AL035698.1 1 OTTHUMG00000015754.2 pseudo_consens +53881 chr6 HAVANA gene 146027646 146437598 7272.0 + 0 ENSG00000152822.13 protein_coding GRM1 2 OTTHUMG00000015752.3 overlapping_locus +53882 chr6 HAVANA gene 146543693 146554965 1217.0 + 0 ENSG00000118508.4 protein_coding RAB32 2 OTTHUMG00000015755.1 +53883 chr6 HAVANA gene 146594516 146598931 2190.0 - 0 ENSG00000237468.2 lincRNA AL359547.1 2 OTTHUMG00000015756.2 +53884 chr6 HAVANA gene 146638844 146639261 418.0 - 0 ENSG00000273719.1 processed_pseudogene AL359547.2 2 OTTHUMG00000187647.1 +53885 chr6 ENSEMBL gene 146639700 146639769 70.0 + 0 ENSG00000207431.2 snRNA RNU6-906P 3 +53886 chr6 HAVANA gene 146802359 146803824 1466.0 - 0 ENSG00000228283.3 transcribed_processed_pseudogene KATNBL1P6 1 OTTHUMG00000015759.3 pseudo_consens +53887 chr6 HAVANA gene 146598965 146815462 7773.0 + 0 ENSG00000118492.16 protein_coding ADGB 1 OTTHUMG00000015758.11 ncRNA_host +53888 chr6 HAVANA gene 146859181 146863081 455.0 + 0 ENSG00000227748.1 lincRNA AL138916.1 1 OTTHUMG00000015760.1 +53889 chr6 HAVANA gene 146948528 146951159 2144.0 - 0 ENSG00000272397.1 lincRNA AL138916.2 2 OTTHUMG00000185358.1 overlapping_locus +53890 chr6 HAVANA gene 147158925 147180992 453.0 + 0 ENSG00000196634.3 lincRNA LUADT1 2 OTTHUMG00000015761.1 +53891 chr6 HAVANA gene 146841901 147204614 6011.0 - 0 ENSG00000233452.6 antisense STXBP5-AS1 2 OTTHUMG00000015762.4 overlapping_locus +53892 chr6 HAVANA gene 147204425 147390476 10504.0 + 0 ENSG00000164506.14 protein_coding STXBP5 2 OTTHUMG00000015766.4 +53893 chr6 HAVANA gene 147406531 147406824 294.0 + 0 ENSG00000273997.1 processed_pseudogene AL355365.1 2 OTTHUMG00000187648.1 +53894 chr6 HAVANA gene 147406889 147408281 1393.0 + 0 ENSG00000220494.4 processed_pseudogene YAP1P1 1 OTTHUMG00000015765.2 pseudo_consens +53895 chr6 HAVANA gene 147508927 147737547 6320.0 + 0 ENSG00000203727.3 protein_coding SAMD5 2 OTTHUMG00000015767.2 overlapping_locus +53896 chr6 HAVANA gene 147741434 147743324 603.0 - 0 ENSG00000226249.1 lincRNA AL365271.1 2 OTTHUMG00000015768.1 +53897 chr6 HAVANA gene 147660703 147953937 1267.0 + 0 ENSG00000227681.5 lincRNA AL033504.1 2 OTTHUMG00000015769.1 overlapping_locus +53898 chr6 HAVANA gene 148017422 148020974 446.0 - 0 ENSG00000234675.1 lincRNA AL445123.1 2 OTTHUMG00000015770.1 +53899 chr6 HAVANA gene 148133809 148137404 426.0 - 0 ENSG00000230205.1 lincRNA AL359382.1 1 OTTHUMG00000015771.1 +53900 chr6 ENSEMBL gene 148278672 148278778 107.0 + 0 ENSG00000207345.1 snRNA RNU6-1222P 3 +53901 chr6 HAVANA gene 148237585 148283408 311.0 - 0 ENSG00000224658.1 antisense AL513164.1 2 OTTHUMG00000015772.1 +53902 chr6 HAVANA gene 148478693 148480763 1428.0 + 0 ENSG00000215223.3 processed_pseudogene CYP51A1P3 1 OTTHUMG00000015774.2 pseudo_consens +53903 chr6 HAVANA gene 148272304 148552050 11143.0 + 0 ENSG00000111961.17 protein_coding SASH1 2 OTTHUMG00000015773.3 ncRNA_host +53904 chr6 HAVANA gene 148567378 148567654 277.0 - 0 ENSG00000217824.1 processed_pseudogene SNRPEP6 1 OTTHUMG00000015775.1 pseudo_consens +53905 chr6 HAVANA gene 148647707 148648597 891.0 - 0 ENSG00000231368.1 processed_pseudogene RPSAP40 1 OTTHUMG00000015776.2 pseudo_consens +53906 chr6 HAVANA gene 148955628 148964684 714.0 - 0 ENSG00000227660.1 antisense UST-AS1 2 OTTHUMG00000015777.1 +53907 chr6 HAVANA gene 149027700 149032573 130.0 - 0 ENSG00000236591.1 antisense AL357992.1 2 OTTHUMG00000015778.1 +53908 chr6 HAVANA gene 148747328 149076990 4563.0 + 0 ENSG00000111962.7 protein_coding UST 2 OTTHUMG00000016135.1 +53909 chr6 HAVANA gene 149112009 149112672 664.0 - 0 ENSG00000219487.2 processed_pseudogene AL603766.1 1 OTTHUMG00000015779.2 pseudo_consens +53910 chr6 HAVANA gene 149217926 149245554 2853.0 + 0 ENSG00000228408.6 lincRNA AL031056.1 2 OTTHUMG00000015782.2 overlapping_locus +53911 chr6 HAVANA gene 149246095 149255415 1217.0 + 0 ENSG00000283608.1 lincRNA AL031056.2 2 OTTHUMG00000191684.1 +53912 chr6 HAVANA gene 149243299 149257551 1364.0 - 0 ENSG00000225924.2 lincRNA TAB2-AS1 2 OTTHUMG00000191683.1 +53913 chr6 ENSEMBL gene 149291352 149291646 295.0 + 0 ENSG00000241391.3 misc_RNA RN7SL234P 3 +53914 chr6 HAVANA gene 149304107 149304428 322.0 - 0 ENSG00000216265.1 processed_pseudogene FABP12P1 2 OTTHUMG00000015780.1 +53915 chr6 HAVANA gene 149400227 149401292 1066.0 + 0 ENSG00000177688.6 protein_coding SUMO4 2 OTTHUMG00000015785.1 overlapping_locus,retrogene +53916 chr6 HAVANA gene 149218641 149411613 6010.0 + 0 ENSG00000055208.18 protein_coding TAB2 1 OTTHUMG00000015783.7 ncRNA_host,overlapping_locus +53917 chr6 HAVANA gene 149446795 149485061 6733.0 - 0 ENSG00000178199.13 protein_coding ZC3H12D 1 OTTHUMG00000015786.5 +53918 chr6 HAVANA gene 149491567 149492289 723.0 - 0 ENSG00000219553.2 processed_pseudogene AL031133.1 1 OTTHUMG00000015784.2 pseudo_consens +53919 chr6 ENSEMBL gene 149516956 149517017 62.0 + 0 ENSG00000252244.1 snRNA RNU7-3P 3 +53920 chr6 HAVANA gene 149504733 149546038 2646.0 - 0 ENSG00000131013.3 protein_coding PPIL4 2 OTTHUMG00000015788.1 +53921 chr6 HAVANA gene 149561152 149563949 378.0 + 0 ENSG00000235168.1 lincRNA AL078581.2 1 OTTHUMG00000015791.1 +53922 chr6 HAVANA gene 149576089 149590864 744.0 - 0 ENSG00000281021.1 antisense AL078581.3 2 OTTHUMG00000189715.1 +53923 chr6 HAVANA gene 149566294 149591748 2248.0 + 0 ENSG00000055211.13 protein_coding GINM1 2 OTTHUMG00000015789.2 +53924 chr6 HAVANA gene 149591755 149592663 340.0 - 0 ENSG00000233330.1 antisense AL078581.1 2 OTTHUMG00000015793.1 +53925 chr6 ENSEMBL gene 149594625 149594759 135.0 + 0 ENSG00000202343.1 snoRNA RF00410 3 +53926 chr6 HAVANA gene 149592687 149601878 1725.0 + 0 ENSG00000220848.5 transcribed_processed_pseudogene RPS18P9 1 OTTHUMG00000015790.2 pseudo_consens +53927 chr6 ENSEMBL gene 149631437 149631549 113.0 + 0 ENSG00000207292.1 misc_RNA RF00019 3 +53928 chr6 HAVANA gene 149594873 149648972 2308.0 - 0 ENSG00000186625.13 protein_coding KATNA1 2 OTTHUMG00000015787.3 +53929 chr6 HAVANA gene 149658153 149718256 8643.0 - 0 ENSG00000131023.12 protein_coding LATS1 1 OTTHUMG00000016437.6 +53930 chr6 HAVANA gene 149717621 149718888 1268.0 + 0 ENSG00000278899.1 antisense AL358852.1 2 OTTHUMG00000192185.1 +53931 chr6 HAVANA gene 149724315 149749665 4432.0 - 0 ENSG00000120253.13 protein_coding NUP43 1 OTTHUMG00000015795.6 +53932 chr6 HAVANA gene 149794763 149795746 676.0 + 0 ENSG00000219433.2 processed_pseudogene BTBD10P2 1 OTTHUMG00000015797.2 pseudo_consens,overlapping_locus +53933 chr6 HAVANA gene 149796151 149799150 2117.0 - 0 ENSG00000231760.5 antisense AL355312.2 2 OTTHUMG00000193423.1 +53934 chr6 HAVANA gene 149749443 149811420 2832.0 + 0 ENSG00000120265.17 protein_coding PCMT1 1 OTTHUMG00000015794.5 overlapping_locus +53935 chr6 HAVANA gene 149797317 149826294 876.0 - 0 ENSG00000285889.1 processed_transcript AL355312.4 2 OTTHUMG00000015798.4 overlapping_locus +53936 chr6 HAVANA gene 149852462 149853192 312.0 + 0 ENSG00000273132.1 antisense AL355312.3 2 OTTHUMG00000186262.1 +53937 chr6 HAVANA gene 149818798 149864026 5652.0 - 0 ENSG00000120256.10 protein_coding LRP11 2 OTTHUMG00000015801.2 overlapping_locus +53938 chr6 HAVANA gene 149879962 149881572 1611.0 + 0 ENSG00000217733.2 processed_pseudogene CCT7P1 1 OTTHUMG00000015799.2 pseudo_consens,overlapping_locus +53939 chr6 HAVANA gene 149817937 149896011 5065.0 - 0 ENSG00000285991.1 protein_coding AL355312.5 2 OTTHUMG00000193392.1 overlapping_locus +53940 chr6 HAVANA gene 149883375 149898102 3004.0 - 0 ENSG00000164520.11 protein_coding RAET1E 2 OTTHUMG00000015796.4 overlapping_locus +53941 chr6 HAVANA gene 149904243 149906418 2176.0 + 0 ENSG00000216906.2 processed_pseudogene AL355312.1 1 OTTHUMG00000015800.2 pseudo_consens,overlapping_locus +53942 chr6 HAVANA gene 149863494 149919507 1210.0 + 0 ENSG00000268592.3 antisense RAET1E-AS1 2 OTTHUMG00000185354.1 overlapping_locus +53943 chr6 HAVANA gene 149884431 149919508 605.0 + 0 ENSG00000223701.3 antisense RAET1E-AS1 2 OTTHUMG00000015804.3 overlapping_locus +53944 chr6 HAVANA gene 149916878 149923121 1486.0 - 0 ENSG00000203722.7 protein_coding RAET1G 2 OTTHUMG00000015802.2 +53945 chr6 HAVANA gene 149934527 149936782 1284.0 + 0 ENSG00000216621.8 transcribed_processed_pseudogene AL583835.2 1 OTTHUMG00000015807.3 pseudo_consens +53946 chr6 HAVANA gene 149942000 149949235 1349.0 + 0 ENSG00000131015.4 protein_coding ULBP2 2 OTTHUMG00000015803.1 +53947 chr6 HAVANA gene 149951833 149952239 407.0 + 0 ENSG00000215094.3 processed_pseudogene AL583835.1 2 OTTHUMG00000015808.2 +53948 chr6 HAVANA gene 149964007 149973710 3142.0 + 0 ENSG00000111981.4 protein_coding ULBP1 2 OTTHUMG00000015810.2 +53949 chr6 HAVANA gene 149977922 149978416 495.0 + 0 ENSG00000231120.3 processed_pseudogene BTF3P10 1 OTTHUMG00000015813.1 pseudo_consens,overlapping_locus +53950 chr6 HAVANA gene 149977471 149979105 551.0 + 0 ENSG00000219298.1 processed_pseudogene AL355497.1 1 OTTHUMG00000015814.1 pseudo_consens,overlapping_locus +53951 chr6 HAVANA gene 149998019 150005157 1896.0 - 0 ENSG00000218358.2 transcribed_unprocessed_pseudogene RAET1K 2 OTTHUMG00000015815.2 +53952 chr6 HAVANA gene 150018334 150025532 1346.0 - 0 ENSG00000155918.7 protein_coding RAET1L 2 OTTHUMG00000015809.1 +53953 chr6 HAVANA gene 150032769 150033566 596.0 + 0 ENSG00000216444.1 processed_pseudogene RAET1M 2 OTTHUMG00000015816.1 +53954 chr6 HAVANA gene 150040547 150042033 880.0 - 0 ENSG00000235972.1 lincRNA AL355497.2 2 OTTHUMG00000015812.1 +53955 chr6 HAVANA gene 150042546 150043353 808.0 + 0 ENSG00000213091.2 processed_pseudogene PHBP1 1 OTTHUMG00000015817.3 pseudo_consens +53956 chr6 HAVANA gene 150063150 150069095 988.0 - 0 ENSG00000131019.10 protein_coding ULBP3 2 OTTHUMG00000015811.2 +53957 chr6 ENSEMBL gene 150164584 150164686 103.0 + 0 ENSG00000238594.1 snoRNA RF01210 3 +53958 chr6 HAVANA gene 150143076 150250357 2152.0 + 0 ENSG00000198729.4 protein_coding PPP1R14C 2 OTTHUMG00000015818.1 ncRNA_host +53959 chr6 ENSEMBL gene 150326623 150326763 141.0 - 0 ENSG00000201628.1 snRNA RNU4-7P 3 +53960 chr6 HAVANA gene 150384307 150385120 814.0 - 0 ENSG00000220598.1 processed_pseudogene SSR1P1 1 OTTHUMG00000015819.1 pseudo_consens +53961 chr6 HAVANA gene 150368892 150405969 10362.0 + 0 ENSG00000009765.14 protein_coding IYD 2 OTTHUMG00000016347.4 +53962 chr6 HAVANA gene 150504811 150510300 862.0 - 0 ENSG00000219622.1 processed_pseudogene AL451061.1 1 OTTHUMG00000015820.1 pseudo_consens +53963 chr6 HAVANA gene 150600834 150605850 378.0 + 0 ENSG00000232891.1 sense_intronic AL450344.3 2 OTTHUMG00000015821.1 overlapping_locus +53964 chr6 HAVANA gene 150624677 150626086 639.0 + 0 ENSG00000224029.1 sense_intronic AL450344.1 2 OTTHUMG00000015822.1 overlapping_locus +53965 chr6 HAVANA gene 150650772 150652025 614.0 - 0 ENSG00000226599.1 lincRNA AL450344.2 2 OTTHUMG00000015823.1 +53966 chr6 HAVANA gene 150827663 150828384 722.0 + 0 ENSG00000213089.4 processed_pseudogene PDCL3P5 1 OTTHUMG00000015825.2 pseudo_consens,overlapping_locus +53967 chr6 HAVANA gene 150599883 150843665 7378.0 + 0 ENSG00000120278.16 protein_coding PLEKHG1 2 OTTHUMG00000015824.7 overlapping_locus +53968 chr6 HAVANA gene 150934968 150935566 599.0 + 0 ENSG00000218996.1 processed_pseudogene ARL4AP5 1 OTTHUMG00000015826.1 pseudo_consens,overlapping_locus +53969 chr6 ENSEMBL gene 150939222 150939328 107.0 + 0 ENSG00000202119.1 snRNA RNU6-302P 3 +53970 chr6 HAVANA gene 151054897 151056057 396.0 - 0 ENSG00000232290.1 antisense AL133260.2 2 OTTHUMG00000015829.1 +53971 chr6 HAVANA gene 151099529 151099933 405.0 + 0 ENSG00000219747.1 processed_pseudogene AL133260.1 1 OTTHUMG00000015827.1 pseudo_consens,overlapping_locus +53972 chr6 HAVANA gene 150865549 151101887 5021.0 + 0 ENSG00000120254.15 protein_coding MTHFD1L 2 OTTHUMG00000015828.4 ncRNA_host,overlapping_locus +53973 chr6 HAVANA gene 151196681 151197638 804.0 - 0 ENSG00000231883.1 lincRNA AL138733.2 2 OTTHUMG00000015830.1 overlapping_locus +53974 chr6 ENSEMBL gene 151201341 151201444 104.0 + 0 ENSG00000238616.1 snRNA RNU6-300P 3 +53975 chr6 HAVANA gene 151225550 151225947 398.0 - 0 ENSG00000213087.3 processed_pseudogene AL356535.1 1 OTTHUMG00000015832.1 pseudo_consens,overlapping_locus +53976 chr6 HAVANA gene 151088103 151228447 853.0 - 0 ENSG00000223598.1 antisense AL138733.1 2 OTTHUMG00000015831.1 overlapping_locus +53977 chr6 ENSEMBL gene 151280515 151280612 98.0 - 0 ENSG00000252431.1 snRNA RNU6-1247P 3 +53978 chr6 ENSEMBL gene 151298841 151298933 93.0 - 0 ENSG00000252487.1 misc_RNA RNY4P20 3 +53979 chr6 ENSEMBL gene 151319635 151319950 316.0 + 0 ENSG00000223039.1 misc_RNA RN7SKP268 3 +53980 chr6 HAVANA gene 151239999 151358557 8741.0 + 0 ENSG00000131016.16 protein_coding AKAP12 2 OTTHUMG00000015833.1 ncRNA_host +53981 chr6 ENSEMBL gene 151378000 151378099 100.0 - 0 ENSG00000252615.1 misc_RNA RF00019 3 +53982 chr6 HAVANA gene 151364117 151391548 3090.0 - 0 ENSG00000181472.4 protein_coding ZBTB2 2 OTTHUMG00000015834.1 ncRNA_host +53983 chr6 HAVANA gene 151411259 151413945 786.0 - 0 ENSG00000219395.2 processed_pseudogene HSPA8P15 1 OTTHUMG00000015835.2 pseudo_consens,overlapping_locus +53984 chr6 HAVANA gene 151404762 151452181 4747.0 - 0 ENSG00000155906.17 protein_coding RMND1 2 OTTHUMG00000015837.8 overlapping_locus +53985 chr6 HAVANA gene 151452258 151470101 2819.0 + 0 ENSG00000146476.10 protein_coding ARMT1 2 OTTHUMG00000015838.4 +53986 chr6 ENSEMBL gene 151615773 151615879 107.0 - 0 ENSG00000207422.1 snRNA RNU6-813P 3 +53987 chr6 HAVANA gene 151494030 151621193 5419.0 + 0 ENSG00000120262.9 protein_coding CCDC170 2 OTTHUMG00000015839.2 +53988 chr6 HAVANA gene 151813276 151814179 258.0 - 0 ENSG00000233823.1 antisense AL356311.1 2 OTTHUMG00000016436.1 +53989 chr6 HAVANA gene 152112759 152118397 511.0 + 0 ENSG00000284615.1 sense_intronic AL078582.1 2 OTTHUMG00000192213.1 +53990 chr6 HAVANA gene 151656691 152129619 13629.0 + 0 ENSG00000091831.23 protein_coding ESR1 2 OTTHUMG00000016103.7 +53991 chr6 HAVANA gene 152380546 152381564 553.0 + 0 ENSG00000234577.1 antisense SYNE1-AS1 2 OTTHUMG00000015843.1 +53992 chr6 HAVANA gene 152402398 152404966 385.0 + 0 ENSG00000226193.1 antisense AL049548.1 1 OTTHUMG00000015845.1 +53993 chr6 ENSEMBL gene 152410275 152410394 120.0 + 0 ENSG00000202044.1 rRNA_pseudogene RNA5SP223 3 +53994 chr6 HAVANA gene 152545930 152546984 727.0 + 0 ENSG00000233464.2 antisense NANOGP11 2 OTTHUMG00000015847.2 +53995 chr6 HAVANA gene 152121684 152637801 46064.0 - 0 ENSG00000131018.22 protein_coding SYNE1 1 OTTHUMG00000015841.12 +53996 chr6 HAVANA gene 152705735 152706128 394.0 + 0 ENSG00000218792.2 processed_pseudogene HSPD1P16 1 OTTHUMG00000015849.2 pseudo_consens,overlapping_locus +53997 chr6 HAVANA gene 152697895 152724567 3030.0 + 0 ENSG00000120279.6 protein_coding MYCT1 2 OTTHUMG00000015850.4 overlapping_locus +53998 chr6 HAVANA gene 152750798 152759765 1584.0 + 0 ENSG00000146469.12 protein_coding VIP 2 OTTHUMG00000015851.1 +53999 chr6 HAVANA gene 152794496 152831913 563.0 - 0 ENSG00000224893.5 lincRNA AL160162.1 2 OTTHUMG00000015852.1 +54000 chr6 HAVANA gene 152898047 152899280 1234.0 + 0 ENSG00000217372.2 processed_pseudogene TUBB4BP7 1 OTTHUMG00000015853.2 pseudo_consens +54001 chr6 HAVANA gene 152959359 152959605 247.0 - 0 ENSG00000220745.2 processed_pseudogene AL080276.1 1 OTTHUMG00000015855.2 pseudo_consens +54002 chr6 HAVANA gene 152970519 152983579 3833.0 - 0 ENSG00000112029.9 protein_coding FBXO5 2 OTTHUMG00000015854.2 +54003 chr6 HAVANA gene 152983331 152990541 2146.0 + 0 ENSG00000227627.2 antisense AL080276.2 2 OTTHUMG00000015856.2 +54004 chr6 HAVANA gene 152987362 153002685 4273.0 - 0 ENSG00000112031.15 protein_coding MTRF1L 2 OTTHUMG00000015857.3 +54005 chr6 HAVANA gene 153004459 153131249 7899.0 - 0 ENSG00000091844.7 protein_coding RGS17 2 OTTHUMG00000015858.2 +54006 chr6 ENSEMBL gene 153159220 153159345 126.0 - 0 ENSG00000201939.1 rRNA_pseudogene RNA5SP224 3 +54007 chr6 HAVANA gene 153282287 153282733 447.0 - 0 ENSG00000218426.5 processed_pseudogene AL590867.2 2 OTTHUMG00000015859.2 +54008 chr6 HAVANA gene 153304595 153308982 438.0 - 0 ENSG00000237312.1 lincRNA AL590867.3 2 OTTHUMG00000015860.1 +54009 chr6 HAVANA gene 153231320 153347488 1212.0 + 0 ENSG00000213121.2 lincRNA AL590867.1 2 OTTHUMG00000187100.1 +54010 chr6 ENSEMBL gene 153420438 153420572 135.0 + 0 ENSG00000222806.1 rRNA_pseudogene RNA5SP225 3 +54011 chr6 HAVANA gene 153665707 153666390 684.0 + 0 ENSG00000217160.2 processed_pseudogene MTCO2P31 2 OTTHUMG00000015861.2 +54012 chr6 HAVANA gene 153666466 153666666 201.0 + 0 ENSG00000242246.2 processed_pseudogene AL603908.1 2 OTTHUMG00000015862.2 overlapping_locus +54013 chr6 HAVANA gene 153666627 153667318 692.0 + 0 ENSG00000218776.4 processed_pseudogene MTATP6P31 2 OTTHUMG00000015863.2 overlapping_locus +54014 chr6 HAVANA gene 153667318 153668106 789.0 + 0 ENSG00000217044.1 processed_pseudogene MTCO3P31 2 OTTHUMG00000015864.1 +54015 chr6 HAVANA gene 153668177 153668362 186.0 + 0 ENSG00000220733.1 processed_pseudogene MTND3P20 2 OTTHUMG00000015865.1 +54016 chr6 HAVANA gene 153668589 153668858 270.0 + 0 ENSG00000220514.1 processed_pseudogene MTND4LP20 2 OTTHUMG00000015866.1 +54017 chr6 HAVANA gene 153668879 153669901 1023.0 + 0 ENSG00000216713.1 processed_pseudogene MTND4P13 2 OTTHUMG00000015867.1 +54018 chr6 ENSEMBL gene 153681447 153681553 107.0 + 0 ENSG00000199246.1 snRNA RNU6-896P 3 +54019 chr6 HAVANA gene 153938433 153938992 560.0 - 0 ENSG00000217085.2 processed_pseudogene HMGB3P19 1 OTTHUMG00000015868.2 pseudo_consens +54020 chr6 HAVANA gene 154216931 154217489 559.0 + 0 ENSG00000237593.1 processed_pseudogene AL445220.1 1 OTTHUMG00000015871.1 pseudo_consens,overlapping_locus +54021 chr6 HAVANA gene 154010496 154246867 8135.0 + 0 ENSG00000112038.17 protein_coding OPRM1 1 OTTHUMG00000015870.7 overlapping_locus +54022 chr6 HAVANA gene 154154496 154356792 8474.0 - 0 ENSG00000074706.13 protein_coding IPCEF1 1 OTTHUMG00000015872.5 +54023 chr6 HAVANA gene 154387504 154510659 21564.0 - 0 ENSG00000153721.18 protein_coding CNKSR3 1 OTTHUMG00000015873.6 +54024 chr6 HAVANA gene 154542552 154542740 189.0 + 0 ENSG00000275419.1 processed_pseudogene AL357075.2 2 OTTHUMG00000187649.1 +54025 chr6 HAVANA gene 154549517 154550242 726.0 + 0 ENSG00000220181.1 processed_pseudogene AL357075.1 1 OTTHUMG00000015874.1 pseudo_consens +54026 chr6 HAVANA gene 154576309 154577079 771.0 + 0 ENSG00000219146.1 processed_pseudogene RPS4XP8 1 OTTHUMG00000015875.1 pseudo_consens +54027 chr6 HAVANA gene 154605616 154605954 339.0 - 0 ENSG00000231316.1 processed_pseudogene AL591419.1 1 OTTHUMG00000157130.1 pseudo_consens +54028 chr6 HAVANA gene 154706643 154707795 1153.0 + 0 ENSG00000205625.2 processed_pseudogene AL591499.1 1 OTTHUMG00000015876.1 pseudo_consens +54029 chr6 ENSEMBL gene 154825176 154825279 104.0 - 0 ENSG00000200594.1 snRNA RNU6-824P 3 +54030 chr6 HAVANA gene 154733325 154834244 5481.0 + 0 ENSG00000213079.9 protein_coding SCAF8 2 OTTHUMG00000015877.2 overlapping_locus +54031 chr6 HAVANA gene 154845074 154845620 547.0 - 0 ENSG00000218757.1 processed_pseudogene AL121952.1 1 OTTHUMG00000015878.1 pseudo_consens +54032 chr6 ENSEMBL gene 154853360 154853436 77.0 + 0 ENSG00000264814.1 miRNA MIR1273C 3 +54033 chr6 ENSEMBL gene 154905076 154905206 131.0 - 0 ENSG00000238963.2 snoRNA RF00096 3 +54034 chr6 HAVANA gene 155004835 155005318 319.0 - 0 ENSG00000274451.1 unprocessed_pseudogene AL136228.1 2 OTTHUMG00000187651.1 +54035 chr6 HAVANA gene 155253139 155256724 3088.0 - 0 ENSG00000235381.1 antisense AL596202.1 1 OTTHUMG00000015879.1 +54036 chr6 HAVANA gene 154832697 155257723 11532.0 + 0 ENSG00000146426.18 protein_coding TIAM2 1 OTTHUMG00000015880.12 ncRNA_host,overlapping_locus +54037 chr6 HAVANA gene 155264013 155276548 1209.0 + 0 ENSG00000171217.5 protein_coding CLDN20 2 OTTHUMG00000015882.1 +54038 chr6 HAVANA gene 155257509 155314493 2736.0 - 0 ENSG00000029639.10 protein_coding TFB1M 2 OTTHUMG00000015881.1 +54039 chr6 HAVANA gene 155380511 155381183 554.0 - 0 ENSG00000232529.1 lincRNA AL031773.1 2 OTTHUMG00000015884.1 +54040 chr6 HAVANA gene 155395370 155455903 2042.0 - 0 ENSG00000074771.3 protein_coding NOX3 2 OTTHUMG00000015883.1 +54041 chr6 ENSEMBL gene 155654963 155655026 64.0 - 0 ENSG00000238789.1 snRNA RNU7-152P 3 +54042 chr6 ENSEMBL gene 155946797 155946879 83.0 + 0 ENSG00000221456.1 miRNA MIR1202 3 +54043 chr6 ENSEMBL gene 156378750 156378824 75.0 + 0 ENSG00000212295.1 snoRNA SNORD28B 3 +54044 chr6 HAVANA gene 156350579 156390246 2004.0 + 0 ENSG00000285797.1 lincRNA AL512658.2 2 OTTHUMG00000192841.1 ncRNA_host +54045 chr6 HAVANA gene 156493226 156499771 811.0 - 0 ENSG00000227360.1 lincRNA AL512658.1 2 OTTHUMG00000015885.1 +54046 chr6 HAVANA gene 156662050 156662437 388.0 + 0 ENSG00000220347.1 processed_pseudogene AL355297.1 1 OTTHUMG00000015886.1 pseudo_consens +54047 chr6 HAVANA gene 156774217 156774662 446.0 - 0 ENSG00000271265.1 lincRNA AL355297.3 2 OTTHUMG00000185138.1 +54048 chr6 HAVANA gene 156776360 156778422 1249.0 - 0 ENSG00000271551.2 antisense AL355297.4 2 OTTHUMG00000185117.2 +54049 chr6 ENSEMBL gene 156779678 156779731 54.0 - 0 ENSG00000271899.1 miRNA MIR4466 3 +54050 chr6 HAVANA gene 156780327 156780455 129.0 - 0 ENSG00000270487.1 antisense AL355297.2 2 OTTHUMG00000185139.1 +54051 chr6 HAVANA gene 156976294 156977072 378.0 + 0 ENSG00000218596.2 processed_pseudogene AL162578.1 1 OTTHUMG00000015888.2 pseudo_consens,overlapping_locus +54052 chr6 HAVANA gene 157107727 157119706 423.0 - 0 ENSG00000233044.1 antisense AL049820.1 2 OTTHUMG00000015889.1 +54053 chr6 HAVANA gene 156776020 157210779 44677.0 + 0 ENSG00000049618.23 protein_coding ARID1B 1 OTTHUMG00000015890.11 overlapping_locus +54054 chr6 HAVANA gene 157299045 157300126 1082.0 - 0 ENSG00000217783.2 processed_pseudogene LDHAL6FP 1 OTTHUMG00000015891.2 pseudo_consens,overlapping_locus +54055 chr6 HAVANA gene 157289386 157323601 4644.0 - 0 ENSG00000215712.10 protein_coding TMEM242 2 OTTHUMG00000015893.3 overlapping_locus +54056 chr6 HAVANA gene 157323964 157324477 514.0 + 0 ENSG00000271040.1 lincRNA AL390955.2 2 OTTHUMG00000185283.1 +54057 chr6 HAVANA gene 157365990 157366923 934.0 - 0 ENSG00000213078.3 processed_pseudogene AL390955.1 1 OTTHUMG00000015892.1 pseudo_consens +54058 chr6 HAVANA gene 157372556 157373171 616.0 - 0 ENSG00000218631.1 processed_pseudogene AL117344.1 1 OTTHUMG00000015894.1 pseudo_consens +54059 chr6 ENSEMBL gene 157529132 157529200 69.0 + 0 ENSG00000266617.1 miRNA MIR3692 3 +54060 chr6 HAVANA gene 157381133 157678146 11121.0 + 0 ENSG00000175048.16 protein_coding ZDHHC14 2 OTTHUMG00000015896.6 ncRNA_host +54061 chr6 HAVANA gene 157829143 157830573 681.0 - 0 ENSG00000234361.1 antisense AL391863.2 1 OTTHUMG00000015898.1 +54062 chr6 HAVANA gene 157872571 157875210 1019.0 - 0 ENSG00000229502.5 antisense AL391863.1 2 OTTHUMG00000015897.1 +54063 chr6 HAVANA gene 157885114 157892786 372.0 - 0 ENSG00000236324.1 antisense AL035634.1 2 OTTHUMG00000015900.1 +54064 chr6 HAVANA gene 157924402 157924676 275.0 + 0 ENSG00000220867.1 processed_pseudogene HSPE1P26 1 OTTHUMG00000015899.1 pseudo_consens,overlapping_locus +54065 chr6 ENSEMBL gene 157934168 157934257 90.0 + 0 ENSG00000252658.1 snRNA RNU6-786P 3 +54066 chr6 HAVANA gene 157700387 157945077 4637.0 + 0 ENSG00000130340.15 protein_coding SNX9 2 OTTHUMG00000015903.3 ncRNA_host,overlapping_locus +54067 chr6 HAVANA gene 158000109 158000749 264.0 - 0 ENSG00000285642.1 lincRNA AL139330.1 2 OTTHUMG00000193324.1 +54068 chr6 HAVANA gene 158001107 158002383 599.0 + 0 ENSG00000233496.1 sense_intronic SYNJ2-IT1 2 OTTHUMG00000015901.1 overlapping_locus +54069 chr6 HAVANA gene 157981887 158099176 12493.0 + 0 ENSG00000078269.14 protein_coding SYNJ2 2 OTTHUMG00000015904.5 overlapping_locus +54070 chr6 HAVANA gene 158109515 158168280 11007.0 - 0 ENSG00000122335.15 protein_coding SERAC1 2 OTTHUMG00000015905.8 +54071 chr6 HAVANA gene 158168350 158199344 7565.0 + 0 ENSG00000272047.2 protein_coding GTF2H5 2 OTTHUMG00000015906.4 +54072 chr6 HAVANA gene 158237336 158242797 1979.0 - 0 ENSG00000188451.8 processed_pseudogene SRP72P2 1 OTTHUMG00000015907.1 pseudo_consens +54073 chr6 HAVANA gene 158397885 158398561 143.0 - 0 ENSG00000238019.1 antisense AL360169.1 2 OTTHUMG00000015908.1 +54074 chr6 HAVANA gene 158282841 158428379 561.0 + 0 ENSG00000274023.1 sense_overlapping AL360169.2 2 OTTHUMG00000187510.1 overlapping_locus +54075 chr6 ENSEMBL gene 158437797 158438088 292.0 + 0 ENSG00000243373.3 misc_RNA RN7SL173P 3 +54076 chr6 HAVANA gene 158232236 158511828 12285.0 + 0 ENSG00000130338.12 protein_coding TULP4 2 OTTHUMG00000015910.2 ncRNA_host,overlapping_locus +54077 chr6 HAVANA gene 158515605 158516229 625.0 - 0 ENSG00000219188.1 processed_pseudogene CACYBPP3 1 OTTHUMG00000015911.1 pseudo_consens +54078 chr6 ENSEMBL gene 158609707 158609790 84.0 + 0 ENSG00000278571.1 miRNA MIR7161 3 +54079 chr6 HAVANA gene 158609706 158621636 2226.0 - 0 ENSG00000218226.1 processed_pseudogene TATDN2P2 1 OTTHUMG00000015912.1 pseudo_consens +54080 chr6 HAVANA gene 158536436 158635428 5390.0 + 0 ENSG00000146433.8 protein_coding TMEM181 2 OTTHUMG00000015913.1 ncRNA_host +54081 chr6 HAVANA gene 158636474 158644739 2949.0 - 0 ENSG00000146425.10 protein_coding DYNLT1 2 OTTHUMG00000015918.2 +54082 chr6 HAVANA gene 158725747 158726803 1057.0 - 0 ENSG00000219249.2 processed_pseudogene AMZ2P2 1 OTTHUMG00000015914.2 pseudo_consens +54083 chr6 ENSEMBL gene 158764661 158764753 93.0 - 0 ENSG00000265558.1 miRNA MIR3918 3 +54084 chr6 HAVANA gene 158650014 158764876 2896.0 + 0 ENSG00000164674.15 protein_coding SYTL3 2 OTTHUMG00000015916.1 +54085 chr6 HAVANA gene 158765741 158819412 3342.0 - 0 ENSG00000092820.17 protein_coding EZR 2 OTTHUMG00000015917.1 +54086 chr6 HAVANA gene 158817979 158822252 362.0 + 0 ENSG00000233893.2 antisense EZR-AS1 2 OTTHUMG00000015915.2 +54087 chr6 HAVANA gene 158841117 158857632 1226.0 - 0 ENSG00000243775.2 transcribed_processed_pseudogene OSTCP1 1 OTTHUMG00000015919.2 pseudo_consens +54088 chr6 HAVANA gene 158853588 158864502 2687.0 + 0 ENSG00000285159.1 lincRNA AL627422.2 2 OTTHUMG00000192607.1 +54089 chr6 HAVANA gene 158869939 158919105 1614.0 + 0 ENSG00000203711.13 lincRNA C6orf99 2 OTTHUMG00000015921.6 +54090 chr6 HAVANA gene 158921271 158922150 580.0 - 0 ENSG00000213076.3 processed_pseudogene AL627422.1 1 OTTHUMG00000015920.1 pseudo_consens +54091 chr6 ENSEMBL gene 158926466 158926571 106.0 - 0 ENSG00000223191.1 snRNA RNU6-293P 3 +54092 chr6 HAVANA gene 158972871 159000187 6561.0 - 0 ENSG00000130363.11 protein_coding RSPH3 2 OTTHUMG00000015924.2 +54093 chr6 HAVANA gene 159034468 159045152 4089.0 - 0 ENSG00000164691.17 protein_coding TAGAP 2 OTTHUMG00000015923.3 +54094 chr6 HAVANA gene 158988178 159088114 5659.0 + 0 ENSG00000271913.6 antisense AL035530.2 2 OTTHUMG00000185830.2 +54095 chr6 HAVANA gene 159042192 159095823 567.0 - 0 ENSG00000226032.2 processed_transcript AL035530.1 1 OTTHUMG00000192608.1 overlapping_locus +54096 chr6 HAVANA gene 159094093 159116254 1632.0 + 0 ENSG00000224478.2 lincRNA AL356417.1 2 OTTHUMG00000015925.2 +54097 chr6 HAVANA gene 159051674 159121495 14874.0 - 0 ENSG00000285492.1 lincRNA AL356417.3 2 OTTHUMG00000015922.2 +54098 chr6 HAVANA gene 159165899 159170007 822.0 - 0 ENSG00000233682.3 antisense AL356417.2 1 OTTHUMG00000015926.3 +54099 chr6 HAVANA gene 159240786 159243329 516.0 + 0 ENSG00000235086.1 sense_intronic FNDC1-IT1 1 OTTHUMG00000015929.1 overlapping_locus +54100 chr6 HAVANA gene 159169397 159272109 6854.0 + 0 ENSG00000164694.16 protein_coding FNDC1 2 OTTHUMG00000015927.4 overlapping_locus +54101 chr6 HAVANA gene 159353922 159383339 1042.0 - 0 ENSG00000231178.2 lincRNA AL357832.1 1 OTTHUMG00000015930.3 +54102 chr6 HAVANA gene 159383443 159401146 1155.0 + 0 ENSG00000234777.2 lincRNA LINC02529 2 OTTHUMG00000015931.2 +54103 chr6 HAVANA gene 159526062 159526527 466.0 - 0 ENSG00000216480.2 processed_pseudogene AL078604.1 1 OTTHUMG00000015932.2 pseudo_consens +54104 chr6 HAVANA gene 159555964 159556174 211.0 + 0 ENSG00000276413.1 processed_pseudogene AL078604.3 1 OTTHUMG00000187653.1 pseudo_consens +54105 chr6 HAVANA gene 159586955 159589169 2002.0 - 0 ENSG00000237927.1 lincRNA AL078604.2 2 OTTHUMG00000141283.1 +54106 chr6 HAVANA gene 159712801 159713985 1185.0 - 0 ENSG00000220305.1 processed_pseudogene HNRNPH1P1 1 OTTHUMG00000015938.1 pseudo_consens,overlapping_locus +54107 chr6 ENSEMBL gene 159720415 159720540 126.0 - 0 ENSG00000251988.1 snRNA RNU4ATAC18P 3 +54108 chr6 HAVANA gene 159669057 159745186 16493.0 - 0 ENSG00000112096.17 protein_coding SOD2 1 OTTHUMG00000015940.4 ncRNA_host,overlapping_locus +54109 chr6 HAVANA gene 159725585 159756319 5830.0 + 0 ENSG00000146457.15 protein_coding WTAP 2 OTTHUMG00000015933.5 +54110 chr6 HAVANA gene 159760258 159762332 1718.0 - 0 ENSG00000285427.1 lincRNA SOD2-OT1 2 OTTHUMG00000192417.1 overlapping_locus +54111 chr6 HAVANA gene 159679119 159762529 2558.0 - 0 ENSG00000285441.1 protein_coding SOD2 2 OTTHUMG00000192416.1 ncRNA_host,overlapping_locus +54112 chr6 HAVANA gene 159760328 159779055 4299.0 + 0 ENSG00000120437.8 protein_coding ACAT2 2 OTTHUMG00000015935.1 +54113 chr6 ENSEMBL gene 159780250 159780381 132.0 - 0 ENSG00000207392.1 snoRNA SNORA20 3 +54114 chr6 ENSEMBL gene 159785594 159785733 140.0 - 0 ENSG00000206910.1 snoRNA SNORA29 3 +54115 chr6 HAVANA gene 159778498 159789749 4929.0 - 0 ENSG00000120438.11 protein_coding TCP1 2 OTTHUMG00000015937.5 ncRNA_host +54116 chr6 HAVANA gene 159789812 159798436 1375.0 + 0 ENSG00000112110.9 protein_coding MRPL18 2 OTTHUMG00000015942.1 +54117 chr6 HAVANA gene 159800249 159820704 2206.0 + 0 ENSG00000146453.12 protein_coding PNLDC1 2 OTTHUMG00000015941.3 +54118 chr6 HAVANA gene 159899186 159902510 595.0 + 0 ENSG00000236823.1 lincRNA AL035691.1 1 OTTHUMG00000015943.2 +54119 chr6 HAVANA gene 159906690 159916530 9841.0 + 0 ENSG00000130368.5 protein_coding MAS1 2 OTTHUMG00000015944.2 +54120 chr6 HAVANA gene 160003291 160007664 4374.0 - 0 ENSG00000268257.2 antisense AIRN 2 OTTHUMG00000183173.2 +54121 chr6 HAVANA gene 160093082 160096212 3131.0 + 0 ENSG00000213073.4 transcribed_processed_pseudogene AL353625.1 1 OTTHUMG00000015946.2 pseudo_consens,overlapping_locus +54122 chr6 HAVANA gene 159969099 160113507 14911.0 + 0 ENSG00000197081.13 protein_coding IGF2R 2 OTTHUMG00000015945.4 overlapping_locus +54123 chr6 HAVANA gene 160121789 160158718 2312.0 + 0 ENSG00000175003.13 protein_coding SLC22A1 1 OTTHUMG00000015947.5 +54124 chr6 HAVANA gene 160163539 160163755 217.0 - 0 ENSG00000216516.1 processed_pseudogene AL645733.1 1 OTTHUMG00000015948.1 pseudo_consens +54125 chr6 HAVANA gene 160272617 160276130 467.0 + 0 ENSG00000230234.1 lincRNA AL162582.1 1 OTTHUMG00000015949.1 +54126 chr6 HAVANA gene 160171061 160277638 6171.0 - 0 ENSG00000112499.12 protein_coding SLC22A2 2 OTTHUMG00000015950.1 +54127 chr6 HAVANA gene 160348268 160452581 3348.0 + 0 ENSG00000146477.5 protein_coding SLC22A3 2 OTTHUMG00000015953.1 +54128 chr6 HAVANA gene 160453428 160520269 4749.0 - 0 ENSG00000213071.11 transcribed_unprocessed_pseudogene LPAL2 2 OTTHUMG00000015952.5 +54129 chr6 HAVANA gene 160531483 160664259 6419.0 - 0 ENSG00000198670.11 protein_coding LPA 2 OTTHUMG00000015956.2 +54130 chr6 HAVANA gene 160666228 160676523 260.0 - 0 ENSG00000243831.1 unprocessed_pseudogene AL109933.2 2 OTTHUMG00000015955.1 +54131 chr6 HAVANA gene 160698288 160700632 327.0 + 0 ENSG00000224477.5 lincRNA AL109933.1 1 OTTHUMG00000015954.1 +54132 chr6 HAVANA gene 160702238 160753315 6380.0 + 0 ENSG00000122194.18 protein_coding PLG 1 OTTHUMG00000015957.4 +54133 chr6 HAVANA gene 160755398 160757518 157.0 - 0 ENSG00000276960.1 unprocessed_pseudogene AL109933.4 2 OTTHUMG00000187655.1 +54134 chr6 HAVANA gene 160773988 160783214 188.0 + 0 ENSG00000274903.1 unprocessed_pseudogene AL109933.3 2 OTTHUMG00000187657.1 +54135 chr6 HAVANA gene 160905770 160913638 489.0 + 0 ENSG00000220913.1 unprocessed_pseudogene AL391361.1 2 OTTHUMG00000015960.1 +54136 chr6 HAVANA gene 160872888 160926204 891.0 - 0 ENSG00000224371.6 lincRNA AL391361.2 2 OTTHUMG00000015959.2 +54137 chr6 HAVANA gene 160926369 160927162 379.0 + 0 ENSG00000233342.1 lincRNA AL391361.3 2 OTTHUMG00000015961.1 +54138 chr6 HAVANA gene 160931080 160969771 573.0 + 0 ENSG00000231863.1 antisense AL139393.1 2 OTTHUMG00000015962.1 +54139 chr6 HAVANA gene 160990318 160992342 2025.0 - 0 ENSG00000272841.1 antisense AL139393.2 2 OTTHUMG00000185865.1 +54140 chr6 HAVANA gene 160991727 161117385 7522.0 + 0 ENSG00000085511.19 protein_coding MAP3K4 2 OTTHUMG00000015968.4 +54141 chr6 HAVANA gene 161160105 161161982 1878.0 - 0 ENSG00000279355.1 TEC AGPAT4-IT1 2 OTTHUMG00000152859.1 overlapping_locus +54142 chr6 HAVANA gene 161129979 161274061 8769.0 - 0 ENSG00000026652.13 protein_coding AGPAT4 2 OTTHUMG00000015966.3 overlapping_locus +54143 chr6 HAVANA gene 162568379 162569728 1350.0 + 0 ENSG00000227913.1 processed_pseudogene KRT8P44 1 OTTHUMG00000015969.1 pseudo_consens +54144 chr6 HAVANA gene 161347420 162727771 4899.0 - 0 ENSG00000185345.20 protein_coding PRKN 2 OTTHUMG00000015970.8 +54145 chr6 HAVANA gene 162957258 162957548 291.0 - 0 ENSG00000217557.1 processed_pseudogene AL590286.1 1 OTTHUMG00000015972.2 pseudo_consens +54146 chr6 HAVANA gene 162969050 162975007 1424.0 - 0 ENSG00000285610.1 antisense AL590286.2 2 OTTHUMG00000192995.1 +54147 chr6 HAVANA gene 163042557 163054161 1542.0 - 0 ENSG00000225437.5 antisense PACRG-AS2 2 OTTHUMG00000015973.1 +54148 chr6 HAVANA gene 163115691 163137775 1704.0 - 0 ENSG00000285553.1 lincRNA AL137182.1 2 OTTHUMG00000192733.1 +54149 chr6 HAVANA gene 163165414 163192002 4466.0 - 0 ENSG00000225683.5 antisense PACRG-AS3 2 OTTHUMG00000187105.2 +54150 chr6 HAVANA gene 162727132 163315492 2612.0 + 0 ENSG00000112530.11 protein_coding PACRG 2 OTTHUMG00000016116.2 +54151 chr6 HAVANA gene 163309985 163324530 2192.0 - 0 ENSG00000281692.1 antisense PACRG-AS1 2 OTTHUMG00000189584.1 +54152 chr6 HAVANA gene 163338394 163346744 4616.0 - 0 ENSG00000285564.1 lincRNA DKFZp451B082 2 OTTHUMG00000192844.1 +54153 chr6 HAVANA gene 163348019 163353220 2227.0 - 0 ENSG00000285726.1 lincRNA AL031121.2 2 OTTHUMG00000192756.1 +54154 chr6 HAVANA gene 163363210 163363463 254.0 + 0 ENSG00000217514.1 processed_pseudogene AL031121.1 1 OTTHUMG00000015974.1 pseudo_consens +54155 chr6 HAVANA gene 163413065 163413960 896.0 - 0 ENSG00000270419.1 lincRNA CAHM 2 OTTHUMG00000175945.2 +54156 chr6 HAVANA gene 163414000 163578596 17368.0 + 0 ENSG00000112531.16 protein_coding QKI 2 OTTHUMG00000015977.5 +54157 chr6 HAVANA gene 163586583 163588165 602.0 - 0 ENSG00000228692.2 lincRNA AL445307.1 2 OTTHUMG00000015978.2 +54158 chr6 HAVANA gene 163705937 163714306 1251.0 - 0 ENSG00000285858.1 lincRNA AL137005.2 2 OTTHUMG00000193173.1 +54159 chr6 HAVANA gene 163703904 163759841 719.0 + 0 ENSG00000235538.1 lincRNA AL137005.1 2 OTTHUMG00000015979.1 +54160 chr6 ENSEMBL gene 163840561 163840852 292.0 + 0 ENSG00000266128.2 misc_RNA RN7SL366P 3 +54161 chr6 HAVANA gene 164084023 164085661 1639.0 - 0 ENSG00000260422.1 lincRNA Z97205.2 2 OTTHUMG00000175946.1 +54162 chr6 HAVANA gene 164108620 164109694 448.0 - 0 ENSG00000230627.1 lincRNA Z97205.1 2 OTTHUMG00000015980.1 +54163 chr6 HAVANA gene 164346489 164348644 466.0 - 0 ENSG00000226739.1 lincRNA AL358972.1 2 OTTHUMG00000015981.1 +54164 chr6 HAVANA gene 164827750 164831630 3881.0 + 0 ENSG00000227455.2 lincRNA AL450345.1 1 OTTHUMG00000015982.2 +54165 chr6 HAVANA gene 165117195 165117524 330.0 - 0 ENSG00000217878.2 processed_pseudogene AL136100.1 2 OTTHUMG00000015983.2 +54166 chr6 HAVANA gene 165279664 165309607 2240.0 - 0 ENSG00000112539.14 protein_coding C6orf118 2 OTTHUMG00000015984.2 +54167 chr6 ENSEMBL gene 165409562 165409676 115.0 + 0 ENSG00000199523.1 rRNA_pseudogene RNA5SP226 3 +54168 chr6 ENSEMBL gene 165718235 165718338 104.0 - 0 ENSG00000206681.1 snRNA RNU6-730P 3 +54169 chr6 HAVANA gene 165773201 165775186 359.0 - 0 ENSG00000223942.1 sense_intronic AL590302.1 2 OTTHUMG00000015989.1 overlapping_locus +54170 chr6 HAVANA gene 165754189 165775780 1122.0 + 0 ENSG00000236627.1 antisense AL590302.2 2 OTTHUMG00000015988.1 +54171 chr6 HAVANA gene 165327287 165988078 22022.0 - 0 ENSG00000112541.14 protein_coding PDE10A 2 OTTHUMG00000015986.4 ncRNA_host +54172 chr6 HAVANA gene 165987551 165989615 2065.0 + 0 ENSG00000281832.1 lincRNA LINC00602 2 OTTHUMG00000189549.1 +54173 chr6 HAVANA gene 166058505 166066028 2169.0 + 0 ENSG00000216624.3 transcribed_processed_pseudogene GAPDHP72 1 OTTHUMG00000015992.3 pseudo_consens +54174 chr6 ENSEMBL gene 166099853 166099924 72.0 + 0 ENSG00000276643.1 snoRNA RF00279 3 +54175 chr6 HAVANA gene 166099665 166113273 1035.0 + 0 ENSG00000231297.3 lincRNA AL627443.1 2 OTTHUMG00000015993.1 ncRNA_host +54176 chr6 HAVANA gene 166157656 166168700 2629.0 - 0 ENSG00000164458.9 protein_coding TBXT 2 OTTHUMG00000015991.3 +54177 chr6 ENSEMBL gene 166209403 166209506 104.0 + 0 ENSG00000201292.1 snRNA RNU6-153P 3 +54178 chr6 HAVANA gene 166229334 166229554 221.0 + 0 ENSG00000280991.1 unprocessed_pseudogene AL121956.5 2 OTTHUMG00000190283.1 +54179 chr6 HAVANA gene 166240290 166240493 204.0 - 0 ENSG00000213536.2 processed_pseudogene GNG5P1 1 OTTHUMG00000015996.1 pseudo_consens +54180 chr6 HAVANA gene 166236969 166256947 1548.0 + 0 ENSG00000233365.2 lincRNA AL121956.1 2 OTTHUMG00000015997.2 +54181 chr6 HAVANA gene 166275462 166277077 581.0 - 0 ENSG00000280850.1 lincRNA AL121956.4 2 OTTHUMG00000190284.1 +54182 chr6 HAVANA gene 166305300 166308448 3149.0 - 0 ENSG00000176381.5 protein_coding PRR18 2 OTTHUMG00000167034.5 +54183 chr6 HAVANA gene 166334568 166335471 904.0 + 0 ENSG00000233231.1 processed_pseudogene HNRNPA1P49 1 OTTHUMG00000015995.1 pseudo_consens +54184 chr6 HAVANA gene 166319728 166342591 3104.0 - 0 ENSG00000198818.9 protein_coding SFT2D1 2 OTTHUMG00000016001.2 +54185 chr6 HAVANA gene 166364919 166383013 1546.0 - 0 ENSG00000060762.18 protein_coding MPC1 2 OTTHUMG00000015999.2 +54186 chr6 HAVANA gene 166383189 166384824 1636.0 + 0 ENSG00000261420.1 antisense AL022069.1 2 OTTHUMG00000175947.1 +54187 chr6 HAVANA gene 166388136 166389920 1785.0 + 0 ENSG00000280057.1 TEC AL022069.2 2 OTTHUMG00000175948.1 +54188 chr6 HAVANA gene 166460663 166465383 579.0 - 0 ENSG00000232082.1 sense_intronic RPS6KA2-IT1 2 OTTHUMG00000046164.1 overlapping_locus +54189 chr6 ENSEMBL gene 166509354 166509433 80.0 - 0 ENSG00000222958.1 miRNA MIR1913 3 +54190 chr6 HAVANA gene 166585604 166587594 1991.0 - 0 ENSG00000235272.2 protein_coding RAMACL 2 OTTHUMG00000016003.4 overlapping_locus,retrogene +54191 chr6 HAVANA gene 166701094 166702839 1746.0 - 0 ENSG00000235008.1 processed_pseudogene AL023775.1 1 OTTHUMG00000016004.1 pseudo_consens,overlapping_locus +54192 chr6 HAVANA gene 166903698 166904835 627.0 + 0 ENSG00000231654.1 antisense RPS6KA2-AS1 1 OTTHUMG00000016006.1 +54193 chr6 HAVANA gene 166409364 166906451 8243.0 - 0 ENSG00000071242.11 protein_coding RPS6KA2 1 OTTHUMG00000016007.9 ncRNA_host,overlapping_locus +54194 chr6 HAVANA gene 166858094 166956124 600.0 - 0 ENSG00000249141.1 protein_coding AL159163.1 2 OTTHUMG00000160910.1 overlapping_locus +54195 chr6 HAVANA gene 166929504 166957191 7643.0 - 0 ENSG00000026297.15 protein_coding RNASET2 2 OTTHUMG00000016009.8 overlapping_locus +54196 chr6 ENSEMBL gene 166997807 166997912 106.0 - 0 ENSG00000265828.1 miRNA MIR3939 3 +54197 chr6 HAVANA gene 166969626 166999065 385.0 - 0 ENSG00000227598.1 bidirectional_promoter_lncRNA Z94721.1 2 OTTHUMG00000016010.1 ncRNA_host +54198 chr6 HAVANA gene 166995735 166999511 1002.0 - 0 ENSG00000285730.1 bidirectional_promoter_lncRNA Z94721.3 2 OTTHUMG00000193024.1 ncRNA_host +54199 chr6 HAVANA gene 166999182 167094789 16016.0 + 0 ENSG00000213066.12 protein_coding FGFR1OP 2 OTTHUMG00000016011.3 overlapping_locus +54200 chr6 HAVANA gene 167114957 167121527 1749.0 - 0 ENSG00000284825.1 lincRNA AL121935.1 2 OTTHUMG00000192610.1 +54201 chr6 HAVANA gene 167126223 167131572 1072.0 - 0 ENSG00000284914.1 lincRNA AL121935.2 2 OTTHUMG00000192611.1 +54202 chr6 HAVANA gene 166999405 167139141 5310.0 + 0 ENSG00000272980.4 processed_transcript Z94721.2 2 OTTHUMG00000185866.1 overlapping_locus +54203 chr6 HAVANA gene 167111807 167139696 4226.0 + 0 ENSG00000112486.16 protein_coding CCR6 2 OTTHUMG00000016015.2 overlapping_locus +54204 chr6 HAVANA gene 167156271 167158329 2059.0 - 0 ENSG00000120436.3 protein_coding GPR31 2 OTTHUMG00000016013.1 +54205 chr6 HAVANA gene 167146414 167196913 4332.0 + 0 ENSG00000166984.11 protein_coding TCP10L2 2 OTTHUMG00000016014.8 +54206 chr6 HAVANA gene 167208631 167208897 267.0 - 0 ENSG00000216966.1 processed_pseudogene AL353747.1 2 OTTHUMG00000016018.1 +54207 chr6 HAVANA gene 167228300 167237511 985.0 + 0 ENSG00000280707.2 lincRNA HPAT5 2 OTTHUMG00000189751.1 +54208 chr6 HAVANA gene 167237508 167240480 579.0 - 0 ENSG00000231720.1 lincRNA AL353747.3 1 OTTHUMG00000016020.1 +54209 chr6 HAVANA gene 167241891 167245916 205.0 + 0 ENSG00000228648.1 lincRNA AL353747.2 2 OTTHUMG00000016019.1 +54210 chr6 HAVANA gene 167271169 167316019 2699.0 + 0 ENSG00000112494.9 protein_coding UNC93A 2 OTTHUMG00000016021.3 +54211 chr6 HAVANA gene 167347472 167348053 582.0 + 0 ENSG00000217447.1 processed_pseudogene AL021331.1 1 OTTHUMG00000016311.1 pseudo_consens,overlapping_locus +54212 chr6 HAVANA gene 167325071 167359503 3088.0 + 0 ENSG00000120440.14 protein_coding TTLL2 2 OTTHUMG00000016023.5 overlapping_locus +54213 chr6 HAVANA gene 167357031 167384510 7697.0 - 0 ENSG00000203690.12 protein_coding TCP10 2 OTTHUMG00000016026.9 +54214 chr6 HAVANA gene 167666840 167679270 4569.0 - 0 ENSG00000272549.1 lincRNA LINC02538 2 OTTHUMG00000185869.1 +54215 chr6 HAVANA gene 167679626 167696290 3867.0 - 0 ENSG00000203688.5 lincRNA LINC02487 2 OTTHUMG00000016027.2 +54216 chr6 HAVANA gene 167767083 167768568 1486.0 - 0 ENSG00000213065.2 processed_pseudogene AL009178.1 1 OTTHUMG00000016028.1 pseudo_consens +54217 chr6 HAVANA gene 167784537 167796859 2146.0 - 0 ENSG00000146521.9 lincRNA LINC01558 2 OTTHUMG00000016030.4 +54218 chr6 HAVANA gene 167795530 167798248 2719.0 + 0 ENSG00000269155.2 lincRNA AL009178.2 2 OTTHUMG00000187112.1 +54219 chr6 HAVANA gene 167796647 167825145 821.0 + 0 ENSG00000285212.1 lincRNA AL009178.3 2 OTTHUMG00000192530.1 +54220 chr6 HAVANA gene 167823876 167826709 2362.0 - 0 ENSG00000198221.8 lincRNA AFDN-DT 2 OTTHUMG00000016029.2 +54221 chr6 HAVANA gene 167826922 167972023 13720.0 + 0 ENSG00000130396.20 protein_coding AFDN 1 OTTHUMG00000016031.9 +54222 chr6 HAVANA gene 167975924 167979776 1539.0 - 0 ENSG00000235994.4 processed_transcript HGC6.3 2 OTTHUMG00000016038.3 +54223 chr6 HAVANA gene 167992822 167997077 3088.0 - 0 ENSG00000229921.6 lincRNA KIF25-AS1 2 OTTHUMG00000016036.2 +54224 chr6 HAVANA gene 167996241 168045089 2797.0 + 0 ENSG00000125337.17 protein_coding KIF25 2 OTTHUMG00000016035.5 +54225 chr6 HAVANA gene 168053166 168101511 8801.0 - 0 ENSG00000153303.17 protein_coding FRMD1 2 OTTHUMG00000016037.9 +54226 chr6 HAVANA gene 168194358 168204501 449.0 + 0 ENSG00000234768.1 lincRNA AL611929.1 1 OTTHUMG00000016040.1 +54227 chr6 HAVANA gene 168225279 168226517 455.0 - 0 ENSG00000237987.1 lincRNA AL606970.4 2 OTTHUMG00000016041.1 +54228 chr6 HAVANA gene 168229732 168240715 470.0 + 0 ENSG00000228361.2 lincRNA AL606970.2 2 OTTHUMG00000016042.2 +54229 chr6 HAVANA gene 168242938 168262581 2624.0 + 0 ENSG00000234647.2 lincRNA AL606970.3 2 OTTHUMG00000016043.2 +54230 chr6 HAVANA gene 168286905 168289350 2446.0 - 0 ENSG00000230711.2 processed_pseudogene CTAGE13P 1 OTTHUMG00000016044.1 pseudo_consens +54231 chr6 HAVANA gene 168298069 168302114 2559.0 - 0 ENSG00000224417.2 sense_intronic AL606970.1 2 OTTHUMG00000016045.2 overlapping_locus +54232 chr6 HAVANA gene 168292830 168319754 4223.0 - 0 ENSG00000164488.11 protein_coding DACT2 2 OTTHUMG00000016046.2 overlapping_locus +54233 chr6 HAVANA gene 168374697 168375355 659.0 + 0 ENSG00000260771.1 lincRNA AL138918.1 2 OTTHUMG00000175949.1 +54234 chr6 HAVANA gene 168441151 168673445 4032.0 + 0 ENSG00000112562.18 protein_coding SMOC2 2 OTTHUMG00000016050.5 +54235 chr6 HAVANA gene 168716606 168723495 557.0 + 0 ENSG00000235815.1 lincRNA AL136099.1 2 OTTHUMG00000016049.2 +54236 chr6 HAVANA gene 168820423 168820656 234.0 + 0 ENSG00000280665.1 TEC AL513210.1 2 OTTHUMG00000190292.1 +54237 chr6 HAVANA gene 168962610 168964341 914.0 - 0 ENSG00000225879.1 lincRNA AL109924.1 1 OTTHUMG00000016053.1 +54238 chr6 HAVANA gene 168999401 169000527 762.0 - 0 ENSG00000285917.1 lincRNA AL109924.5 2 OTTHUMG00000193266.1 +54239 chr6 HAVANA gene 169033381 169034050 670.0 + 0 ENSG00000279810.1 TEC AL109924.4 2 OTTHUMG00000175950.1 +54240 chr6 HAVANA gene 169034197 169035642 934.0 - 0 ENSG00000229720.1 lincRNA AL109924.2 1 OTTHUMG00000016052.1 +54241 chr6 HAVANA gene 169067818 169069424 401.0 + 0 ENSG00000234519.1 lincRNA AL109924.3 1 OTTHUMG00000016051.1 +54242 chr6 HAVANA gene 169158092 169162924 1054.0 - 0 ENSG00000223485.2 lincRNA LINC01615 1 OTTHUMG00000016054.3 +54243 chr6 HAVANA gene 169175304 169182740 544.0 - 0 ENSG00000261039.2 lincRNA LINC02544 2 OTTHUMG00000175951.3 +54244 chr6 HAVANA gene 169213254 169239565 980.0 + 0 ENSG00000226445.1 antisense BX322234.1 2 OTTHUMG00000045405.1 +54245 chr6 HAVANA gene 169215780 169254044 6397.0 - 0 ENSG00000186340.15 protein_coding THBS2 2 OTTHUMG00000045408.4 +54246 chr6 HAVANA gene 169286534 169289216 746.0 - 0 ENSG00000233085.5 lincRNA BX322234.2 2 OTTHUMG00000045406.1 +54247 chr6 HAVANA gene 169296471 169297959 866.0 - 0 ENSG00000224999.1 processed_pseudogene VTA1P1 1 OTTHUMG00000045407.1 pseudo_consens +54248 chr6 HAVANA gene 169369998 169388385 2685.0 - 0 ENSG00000226194.5 lincRNA LINC02519 1 OTTHUMG00000016055.1 +54249 chr6 HAVANA gene 169419004 169425156 4158.0 - 0 ENSG00000285887.1 lincRNA AL009176.1 2 OTTHUMG00000192626.1 overlapping_locus +54250 chr6 HAVANA gene 169426420 169452475 4107.0 - 0 ENSG00000272848.2 lincRNA AL135910.1 2 OTTHUMG00000185870.2 overlapping_locus +54251 chr6 HAVANA gene 169419969 169702047 4233.0 - 0 ENSG00000285733.1 protein_coding AL031315.1 2 OTTHUMG00000192627.3 overlapping_locus +54252 chr6 HAVANA gene 169457212 169702067 12610.0 - 0 ENSG00000184465.16 protein_coding WDR27 2 OTTHUMG00000016061.12 +54253 chr6 HAVANA gene 169702190 169704856 2667.0 + 0 ENSG00000185127.6 protein_coding C6orf120 2 OTTHUMG00000016057.1 +54254 chr6 HAVANA gene 169703905 169725566 5534.0 - 0 ENSG00000130024.14 protein_coding PHF10 2 OTTHUMG00000016058.3 +54255 chr6 HAVANA gene 169725091 169725854 403.0 - 0 ENSG00000232640.1 antisense AL354892.2 2 OTTHUMG00000016062.1 +54256 chr6 HAVANA gene 169725504 169738992 335.0 + 0 ENSG00000227704.1 antisense AL354892.1 2 OTTHUMG00000016063.1 +54257 chr6 HAVANA gene 169740114 169751587 2626.0 - 0 ENSG00000184786.5 protein_coding TCTE3 2 OTTHUMG00000016068.2 +54258 chr6 HAVANA gene 169770413 169772042 1630.0 + 0 ENSG00000266896.1 sense_intronic AL354892.3 2 OTTHUMG00000180499.1 overlapping_locus +54259 chr6 HAVANA gene 169751622 169781584 4251.0 + 0 ENSG00000130023.15 protein_coding ERMARD 1 OTTHUMG00000016067.5 overlapping_locus +54260 chr6 HAVANA gene 169788790 169799549 4496.0 - 0 ENSG00000229214.2 lincRNA LINC00242 2 OTTHUMG00000016064.3 +54261 chr6 HAVANA gene 169790321 169802873 2318.0 + 0 ENSG00000231690.2 lincRNA LINC00574 2 OTTHUMG00000016071.2 +54262 chr6 HAVANA gene 169809318 169810102 694.0 - 0 ENSG00000236173.1 lincRNA AL049612.1 2 OTTHUMG00000016072.1 +54263 chr6 HAVANA gene 170162517 170163027 429.0 + 0 ENSG00000232197.1 antisense AL596442.1 2 OTTHUMG00000016073.1 +54264 chr6 HAVANA gene 170178681 170179660 980.0 + 0 ENSG00000273100.1 lincRNA AL596442.2 2 OTTHUMG00000185871.2 +54265 chr6 HAVANA gene 170199769 170200258 490.0 + 0 ENSG00000218716.1 processed_pseudogene RPL12P23 1 OTTHUMG00000016074.1 pseudo_consens +54266 chr6 HAVANA gene 170254334 170262569 1330.0 - 0 ENSG00000230960.1 antisense AL109910.1 2 OTTHUMG00000016075.1 +54267 chr6 HAVANA gene 170266669 170276762 1953.0 - 0 ENSG00000271820.1 lincRNA AL109910.2 2 OTTHUMG00000185351.1 +54268 chr6 HAVANA gene 170272474 170279887 3611.0 + 0 ENSG00000227508.6 lincRNA LINC01624 2 OTTHUMG00000016077.2 +54269 chr6 HAVANA gene 170297876 170298375 500.0 - 0 ENSG00000271234.1 lincRNA AL078605.1 2 OTTHUMG00000185240.1 +54270 chr6 HAVANA gene 170282206 170306565 3226.0 - 0 ENSG00000198719.8 protein_coding DLL1 2 OTTHUMG00000016078.3 +54271 chr6 ENSEMBL gene 170330761 170330844 84.0 + 0 ENSG00000266245.1 miRNA MIR4644 3 +54272 chr6 HAVANA gene 170290703 170407065 6029.0 + 0 ENSG00000112584.13 protein_coding FAM120B 2 OTTHUMG00000016080.5 ncRNA_host +54273 chr6 HAVANA gene 170414139 170419325 5187.0 + 0 ENSG00000261003.1 sense_overlapping AL008628.1 2 OTTHUMG00000175952.1 +54274 chr6 HAVANA gene 170535117 170553341 2256.0 - 0 ENSG00000008018.8 protein_coding PSMB1 2 OTTHUMG00000016087.2 +54275 chr6 HAVANA gene 170554302 170572870 2318.0 + 0 ENSG00000112592.13 protein_coding TBP 1 OTTHUMG00000016084.4 +54276 chr6 HAVANA gene 170575295 170584692 6476.0 - 0 ENSG00000071994.10 protein_coding PDCD2 1 OTTHUMG00000016083.6 +54277 chr6 HAVANA gene 170639606 170640536 931.0 + 0 ENSG00000217874.2 unprocessed_pseudogene OR4F7P 2 OTTHUMG00000016086.2 +54278 chr6 HAVANA gene 170651012 170651338 327.0 - 0 ENSG00000273640.1 processed_pseudogene WBP1LP8 1 OTTHUMG00000187659.1 pseudo_consens +54279 chr6 HAVANA gene 170695313 170696950 806.0 + 0 ENSG00000234986.1 lincRNA AL731661.2 2 OTTHUMG00000016088.1 +54280 chr6 HAVANA gene 170725197 170728488 758.0 + 0 ENSG00000213863.2 lincRNA AL731661.1 2 OTTHUMG00000016089.1 +54281 chr6 HAVANA gene 170735751 170736545 333.0 + 0 ENSG00000230423.1 lincRNA AL731684.2 2 OTTHUMG00000016090.1 +54282 chr6 HAVANA gene 170736173 170737777 439.0 - 0 ENSG00000225532.1 lincRNA AL731684.1 2 OTTHUMG00000016092.1 +54283 chr6 HAVANA gene 170745518 170745977 460.0 + 0 ENSG00000219814.2 processed_pseudogene RPL23AP47 1 OTTHUMG00000016091.2 pseudo_consens +54284 chr7 HAVANA gene 12704 27234 441.0 + 0 ENSG00000283061.1 lincRNA AC215522.3 2 OTTHUMG00000191512.1 +54285 chr7 HAVANA gene 19018 35489 1556.0 - 0 ENSG00000282572.2 processed_transcript AC215522.2 2 OTTHUMG00000190454.2 +54286 chr7 HAVANA gene 37032 37477 446.0 + 0 ENSG00000273644.1 processed_pseudogene AC215522.1 1 OTTHUMG00000187654.1 pseudo_consens +54287 chr7 HAVANA gene 77038 81178 1365.0 + 0 ENSG00000242611.2 lincRNA AC093627.6 2 OTTHUMG00000151400.2 +54288 chr7 HAVANA gene 70972 95683 877.0 - 0 ENSG00000232325.4 lincRNA AC093627.1 2 OTTHUMG00000151403.2 +54289 chr7 HAVANA gene 135853 149466 1766.0 - 0 ENSG00000242474.2 lincRNA AC093627.5 2 OTTHUMG00000151405.2 +54290 chr7 HAVANA gene 149571 155465 5175.0 + 0 ENSG00000240859.2 lincRNA AC093627.4 1 OTTHUMG00000151398.2 +54291 chr7 HAVANA gene 161765 164972 3208.0 - 0 ENSG00000261795.1 lincRNA AC093627.7 2 OTTHUMG00000173363.1 +54292 chr7 HAVANA gene 174920 176013 568.0 + 0 ENSG00000239715.1 lincRNA AC093627.2 1 OTTHUMG00000151402.1 +54293 chr7 HAVANA gene 182935 194180 574.0 - 0 ENSG00000240093.1 antisense AC093627.3 1 OTTHUMG00000151397.1 +54294 chr7 HAVANA gene 227554 229557 2004.0 - 0 ENSG00000249852.1 TEC AC145676.1 2 OTTHUMG00000160234.1 +54295 chr7 HAVANA gene 192969 260745 4629.0 + 0 ENSG00000177706.8 protein_coding FAM20C 1 OTTHUMG00000151401.4 +54296 chr7 HAVANA gene 290170 294422 1087.0 + 0 ENSG00000248767.2 protein_coding AC187653.1 2 OTTHUMG00000160232.2 +54297 chr7 HAVANA gene 379359 382712 2146.0 + 0 ENSG00000249574.1 lincRNA AC226118.1 2 OTTHUMG00000160233.1 +54298 chr7 HAVANA gene 484107 496118 420.0 - 0 ENSG00000234471.1 lincRNA AC147651.2 1 OTTHUMG00000151413.1 +54299 chr7 HAVANA gene 497258 520296 4151.0 - 0 ENSG00000197461.13 protein_coding PDGFA 1 OTTHUMG00000151412.6 +54300 chr7 HAVANA gene 520391 525232 3506.0 + 0 ENSG00000223855.1 lincRNA HRAT92 2 OTTHUMG00000151410.1 +54301 chr7 HAVANA gene 561958 565619 572.0 + 0 ENSG00000229380.1 antisense AC147651.1 2 OTTHUMG00000151415.1 +54302 chr7 HAVANA gene 603185 608482 731.0 + 0 ENSG00000237181.1 antisense AC147651.3 1 OTTHUMG00000151414.1 +54303 chr7 HAVANA gene 549197 727650 4491.0 - 0 ENSG00000188191.14 protein_coding PRKAR1B 1 OTTHUMG00000151411.5 +54304 chr7 HAVANA gene 726701 786475 7137.0 + 0 ENSG00000164818.15 protein_coding DNAAF5 1 OTTHUMG00000151416.3 +54305 chr7 HAVANA gene 879790 886547 6758.0 - 0 ENSG00000273151.1 antisense AC073957.3 2 OTTHUMG00000185874.1 +54306 chr7 HAVANA gene 816615 896435 11811.0 + 0 ENSG00000164828.17 protein_coding SUN1 1 OTTHUMG00000151426.9 overlapping_locus +54307 chr7 HAVANA gene 876552 896436 5392.0 + 0 ENSG00000239857.6 protein_coding GET4 1 OTTHUMG00000112459.12 overlapping_locus +54308 chr7 HAVANA gene 897901 955407 5062.0 - 0 ENSG00000105963.14 protein_coding ADAP1 1 OTTHUMG00000023380.15 overlapping_locus +54309 chr7 HAVANA gene 898778 975599 5542.0 - 0 ENSG00000240230.5 protein_coding COX19 2 OTTHUMG00000151476.1 overlapping_locus +54310 chr7 HAVANA gene 983199 989640 2773.0 + 0 ENSG00000073067.13 protein_coding CYP2W1 2 OTTHUMG00000074071.3 +54311 chr7 ENSEMBL gene 1022933 1023026 94.0 - 0 ENSG00000199023.3 miRNA MIR339 3 +54312 chr7 HAVANA gene 1029025 1043891 535.0 + 0 ENSG00000225146.1 antisense AC073957.1 2 OTTHUMG00000151482.1 +54313 chr7 HAVANA gene 1055360 1059261 1562.0 - 0 ENSG00000257607.1 antisense AC073957.2 2 OTTHUMG00000169520.1 overlapping_locus +54314 chr7 HAVANA gene 1044576 1059261 3160.0 + 0 ENSG00000164849.9 protein_coding GPR146 1 OTTHUMG00000023934.7 +54315 chr7 HAVANA gene 1074450 1078036 869.0 + 0 ENSG00000224079.1 antisense AC091729.1 2 OTTHUMG00000151481.1 +54316 chr7 HAVANA gene 1080863 1082178 302.0 + 0 ENSG00000226291.1 antisense AC091729.2 2 OTTHUMG00000151483.1 +54317 chr7 HAVANA gene 1082208 1093815 3149.0 + 0 ENSG00000164850.14 protein_coding GPER1 2 OTTHUMG00000023680.4 retrogene +54318 chr7 HAVANA gene 996986 1138260 4961.0 - 0 ENSG00000146540.14 protein_coding C7orf50 2 OTTHUMG00000151477.6 ncRNA_host,overlapping_locus +54319 chr7 HAVANA gene 1152071 1160759 2281.0 - 0 ENSG00000178381.11 protein_coding ZFAND2A 1 OTTHUMG00000119019.4 +54320 chr7 HAVANA gene 1160374 1165267 2002.0 + 0 ENSG00000229043.2 antisense AC091729.3 2 OTTHUMG00000151480.1 +54321 chr7 HAVANA gene 1232907 1237318 2048.0 + 0 ENSG00000164853.8 protein_coding UNCX 2 OTTHUMG00000152022.2 +54322 chr7 HAVANA gene 1267353 1269267 433.0 + 0 ENSG00000233082.1 lincRNA AC073094.1 1 OTTHUMG00000152023.1 +54323 chr7 HAVANA gene 1428465 1459502 8843.0 - 0 ENSG00000164877.18 protein_coding MICALL2 2 OTTHUMG00000119021.5 +54324 chr7 HAVANA gene 1459937 1464008 498.0 + 0 ENSG00000225981.1 antisense AC102953.1 1 OTTHUMG00000151454.1 +54325 chr7 HAVANA gene 1464497 1467522 3026.0 - 0 ENSG00000273230.1 lincRNA AC102953.2 2 OTTHUMG00000185875.1 +54326 chr7 HAVANA gene 1470277 1504367 9062.0 - 0 ENSG00000164880.15 protein_coding INTS1 1 OTTHUMG00000151449.4 +54327 chr7 HAVANA gene 1508655 1509427 242.0 - 0 ENSG00000231927.1 antisense AC093734.1 2 OTTHUMG00000151728.1 +54328 chr7 HAVANA gene 1530714 1543043 4458.0 + 0 ENSG00000198517.9 protein_coding MAFK 2 OTTHUMG00000151453.2 +54329 chr7 HAVANA gene 1542235 1560821 7805.0 - 0 ENSG00000164855.15 protein_coding TMEM184A 2 OTTHUMG00000119025.12 +54330 chr7 HAVANA gene 1567330 1571005 1960.0 - 0 ENSG00000157778.8 protein_coding PSMG3 1 OTTHUMG00000119043.2 +54331 chr7 HAVANA gene 1570073 1589626 6355.0 + 0 ENSG00000230487.7 lincRNA PSMG3-AS1 1 OTTHUMG00000151452.3 +54332 chr7 HAVANA gene 1614590 1615325 736.0 + 0 ENSG00000230444.1 processed_pseudogene TFAMP1 1 OTTHUMG00000151494.1 pseudo_consens +54333 chr7 HAVANA gene 1620654 1621405 437.0 + 0 ENSG00000231476.1 lincRNA AC074389.2 1 OTTHUMG00000151498.1 +54334 chr7 HAVANA gene 1691906 1692450 454.0 - 0 ENSG00000234977.1 lincRNA AC074389.3 2 OTTHUMG00000151492.1 +54335 chr7 HAVANA gene 1692810 1694357 1455.0 - 0 ENSG00000205971.3 lincRNA AC074389.1 2 OTTHUMG00000151500.2 +54336 chr7 HAVANA gene 1738630 1742291 989.0 - 0 ENSG00000236081.1 lincRNA ELFN1-AS1 2 OTTHUMG00000151496.1 +54337 chr7 HAVANA gene 1688119 1747954 3845.0 + 0 ENSG00000225968.7 protein_coding ELFN1 2 OTTHUMG00000151495.2 +54338 chr7 ENSEMBL gene 1844180 1844253 74.0 - 0 ENSG00000265089.1 miRNA MIR4655 3 +54339 chr7 HAVANA gene 1838586 1849931 4764.0 + 0 ENSG00000176349.11 antisense AC104129.1 1 OTTHUMG00000151497.1 +54340 chr7 HAVANA gene 1815793 2233243 7230.0 - 0 ENSG00000002822.15 protein_coding MAD1L1 1 OTTHUMG00000151493.6 ncRNA_host +54341 chr7 HAVANA gene 2234231 2242198 2843.0 - 0 ENSG00000122687.17 protein_coding MRM2 2 OTTHUMG00000023866.6 +54342 chr7 HAVANA gene 2242222 2251146 2093.0 + 0 ENSG00000106268.15 protein_coding NUDT1 2 OTTHUMG00000023072.6 +54343 chr7 ENSEMBL gene 2257515 2257577 63.0 - 0 ENSG00000284047.1 miRNA MIR6836 3 +54344 chr7 HAVANA gene 2287915 2288428 224.0 + 0 ENSG00000271098.1 processed_pseudogene IMMP1LP3 1 OTTHUMG00000184490.1 pseudo_consens +54345 chr7 HAVANA gene 2251770 2354318 5773.0 - 0 ENSG00000106266.10 protein_coding SNX8 1 OTTHUMG00000151512.4 ncRNA_host +54346 chr7 HAVANA gene 2354086 2380745 8998.0 + 0 ENSG00000106263.17 protein_coding EIF3B 2 OTTHUMG00000022839.5 +54347 chr7 HAVANA gene 2383698 2388652 748.0 + 0 ENSG00000230914.3 transcribed_unitary_pseudogene AC004840.1 2 OTTHUMG00000151516.2 +54348 chr7 HAVANA gene 2393847 2394131 285.0 - 0 ENSG00000271163.1 processed_pseudogene AC004840.2 1 OTTHUMG00000184629.1 pseudo_consens +54349 chr7 HAVANA gene 2403560 2448483 16143.0 + 0 ENSG00000136213.9 protein_coding CHST12 2 OTTHUMG00000023849.7 +54350 chr7 HAVANA gene 2474844 2476894 870.0 - 0 ENSG00000275572.1 protein_coding GRIFIN 2 OTTHUMG00000152042.4 +54351 chr7 ENSEMBL gene 2527074 2527145 72.0 + 0 ENSG00000264357.1 miRNA MIR4648 3 +54352 chr7 HAVANA gene 2512529 2529177 3418.0 + 0 ENSG00000106003.12 protein_coding LFNG 1 OTTHUMG00000152043.1 ncRNA_host +54353 chr7 HAVANA gene 2537877 2555727 6639.0 - 0 ENSG00000106009.15 protein_coding BRAT1 2 OTTHUMG00000119091.4 +54354 chr7 HAVANA gene 2558972 2614734 9240.0 + 0 ENSG00000106012.17 protein_coding IQCE 1 OTTHUMG00000152047.8 +54355 chr7 HAVANA gene 2631951 2664802 6129.0 + 0 ENSG00000136295.14 protein_coding TTYH3 2 OTTHUMG00000152050.3 +54356 chr7 HAVANA gene 2679522 2775500 7011.0 + 0 ENSG00000174945.13 protein_coding AMZ1 1 OTTHUMG00000152111.2 +54357 chr7 HAVANA gene 2835621 2836022 402.0 + 0 ENSG00000231357.1 processed_pseudogene AC006028.1 1 OTTHUMG00000152109.1 pseudo_consens +54358 chr7 HAVANA gene 2728112 2844324 6120.0 - 0 ENSG00000146535.13 protein_coding GNA12 1 OTTHUMG00000023064.5 +54359 chr7 HAVANA gene 2944035 2947091 969.0 + 0 ENSG00000237286.1 antisense AC004906.1 1 OTTHUMG00000152115.2 +54360 chr7 ENSEMBL gene 2999094 2999394 301.0 + 0 ENSG00000201794.1 misc_RNA RN7SKP130 3 +54361 chr7 HAVANA gene 2906141 3043945 4707.0 - 0 ENSG00000198286.9 protein_coding CARD11 2 OTTHUMG00000023023.6 +54362 chr7 HAVANA gene 3083252 3086421 437.0 - 0 ENSG00000228334.1 lincRNA AC024028.1 1 OTTHUMG00000152116.1 +54363 chr7 HAVANA gene 3140234 3174654 1725.0 - 0 ENSG00000217455.8 lincRNA AC073316.1 1 OTTHUMG00000152117.1 +54364 chr7 HAVANA gene 3196626 3198256 418.0 - 0 ENSG00000231892.1 lincRNA AC073316.2 2 OTTHUMG00000151735.1 +54365 chr7 HAVANA gene 3264032 3302452 982.0 - 0 ENSG00000236708.1 antisense AC073316.3 2 OTTHUMG00000151736.1 +54366 chr7 HAVANA gene 3337889 3338601 713.0 + 0 ENSG00000224593.1 transcribed_processed_pseudogene AC092427.1 1 OTTHUMG00000157132.2 pseudo_consens,overlapping_locus +54367 chr7 HAVANA gene 3642815 3643784 856.0 - 0 ENSG00000236510.1 antisense AC011284.1 2 OTTHUMG00000151734.1 +54368 chr7 HAVANA gene 4130181 4134837 578.0 - 0 ENSG00000283991.1 antisense AC017000.1 2 OTTHUMG00000191991.1 +54369 chr7 HAVANA gene 3301448 4269000 12062.0 + 0 ENSG00000146555.18 protein_coding SDK1 1 OTTHUMG00000151733.3 overlapping_locus +54370 chr7 HAVANA gene 4511959 4512033 75.0 - 0 ENSG00000261809.1 processed_pseudogene CYP3A54P 2 OTTHUMG00000172693.1 +54371 chr7 HAVANA gene 4682309 4771443 13093.0 + 0 ENSG00000164916.10 protein_coding FOXK1 2 OTTHUMG00000151739.4 +54372 chr7 ENSEMBL gene 4788565 4788639 75.0 - 0 ENSG00000264474.1 miRNA MIR4656 3 +54373 chr7 HAVANA gene 4775615 4794395 8396.0 + 0 ENSG00000242802.7 protein_coding AP5Z1 2 OTTHUMG00000151754.10 +54374 chr7 ENSEMBL gene 4811188 4811289 102.0 - 0 ENSG00000206895.1 misc_RNA RF00019 3 +54375 chr7 HAVANA gene 4857733 4861994 4262.0 - 0 ENSG00000218823.1 protein_coding PAPOLB 2 OTTHUMG00000151759.2 overlapping_locus,retrogene +54376 chr7 HAVANA gene 4865432 4865804 373.0 - 0 ENSG00000213935.3 processed_pseudogene RPL22P16 1 OTTHUMG00000151757.1 pseudo_consens,overlapping_locus +54377 chr7 HAVANA gene 4797055 4883719 6516.0 - 0 ENSG00000157927.16 protein_coding RADIL 2 OTTHUMG00000151753.3 ncRNA_host,overlapping_locus +54378 chr7 HAVANA gene 4905989 4959213 2466.0 - 0 ENSG00000136297.14 protein_coding MMD2 2 OTTHUMG00000151844.2 +54379 chr7 HAVANA gene 5009164 5009328 165.0 - 0 ENSG00000270822.1 processed_pseudogene AC092032.1 2 OTTHUMG00000184646.1 +54380 chr7 HAVANA gene 5031608 5037831 713.0 - 0 ENSG00000275328.1 unprocessed_pseudogene SPDYE19P 2 OTTHUMG00000187656.1 +54381 chr7 HAVANA gene 4973988 5040675 5510.0 + 0 ENSG00000196204.11 transcribed_unprocessed_pseudogene RNF216P1 2 OTTHUMG00000151797.12 overlapping_locus +54382 chr7 HAVANA gene 5045821 5069488 6960.0 + 0 ENSG00000146587.17 protein_coding RBAK 1 OTTHUMG00000121155.2 overlapping_locus +54383 chr7 HAVANA gene 4983718 5073221 1049.0 + 0 ENSG00000272968.5 protein_coding RBAK-RBAKDN 2 OTTHUMG00000186010.2 overlapping_locus +54384 chr7 HAVANA gene 5072125 5073223 514.0 + 0 ENSG00000273313.1 lincRNA RBAKDN 2 OTTHUMG00000186012.1 overlapping_locus +54385 chr7 HAVANA gene 5103719 5120245 3551.0 + 0 ENSG00000272595.2 transcribed_unprocessed_pseudogene OR10AH1P 2 OTTHUMG00000185863.2 +54386 chr7 HAVANA gene 5121239 5144546 1737.0 - 0 ENSG00000159904.11 transcribed_unprocessed_pseudogene ZNF890P 2 OTTHUMG00000166790.1 +54387 chr7 ENSEMBL gene 5180061 5180162 102.0 + 0 ENSG00000202039.1 snRNA RNU6-215P 3 +54388 chr7 HAVANA gene 5190188 5233826 8977.0 + 0 ENSG00000157954.14 protein_coding WIPI2 2 OTTHUMG00000121179.4 +54389 chr7 HAVANA gene 5274369 5306870 5811.0 + 0 ENSG00000164638.10 protein_coding SLC29A4 2 OTTHUMG00000023797.7 +54390 chr7 HAVANA gene 5419827 5420767 583.0 + 0 ENSG00000241269.1 antisense AC093620.1 2 OTTHUMG00000151804.1 overlapping_locus +54391 chr7 HAVANA gene 5419846 5423122 753.0 + 0 ENSG00000188365.3 antisense AC092171.1 1 OTTHUMG00000151810.1 overlapping_locus +54392 chr7 HAVANA gene 5306790 5425414 12572.0 - 0 ENSG00000182095.14 protein_coding TNRC18 1 OTTHUMG00000151831.8 +54393 chr7 HAVANA gene 5425770 5426401 632.0 + 0 ENSG00000272953.1 lincRNA AC092171.4 2 OTTHUMG00000186130.1 +54394 chr7 HAVANA gene 5426277 5428927 2651.0 - 0 ENSG00000234432.4 lincRNA AC092171.3 2 OTTHUMG00000186131.1 +54395 chr7 HAVANA gene 5428731 5429672 942.0 + 0 ENSG00000273084.1 lincRNA AC092171.5 2 OTTHUMG00000186132.1 +54396 chr7 HAVANA gene 5475804 5479811 3251.0 + 0 ENSG00000230733.2 lincRNA AC092171.2 2 OTTHUMG00000151833.2 +54397 chr7 ENSEMBL gene 5495819 5495917 99.0 - 0 ENSG00000207973.1 miRNA MIR589 3 +54398 chr7 HAVANA gene 5431335 5513798 5088.0 - 0 ENSG00000155034.18 protein_coding FBXL18 2 OTTHUMG00000151832.1 ncRNA_host +54399 chr7 HAVANA gene 5556731 5557245 515.0 + 0 ENSG00000272719.1 antisense AC006483.2 2 OTTHUMG00000186133.1 +54400 chr7 HAVANA gene 5560743 5561055 313.0 + 0 ENSG00000228974.5 processed_pseudogene AC006483.1 1 OTTHUMG00000151811.1 pseudo_consens +54401 chr7 HAVANA gene 5527147 5563784 3519.0 - 0 ENSG00000075624.14 protein_coding ACTB 2 OTTHUMG00000023268.11 +54402 chr7 HAVANA gene 5592823 5606655 3692.0 + 0 ENSG00000075618.17 protein_coding FSCN1 1 OTTHUMG00000090599.5 +54403 chr7 HAVANA gene 5662432 5680461 337.0 - 0 ENSG00000237738.1 sense_intronic RNF216-IT1 2 OTTHUMG00000155498.1 overlapping_locus +54404 chr7 ENSEMBL gene 5711840 5711910 71.0 - 0 ENSG00000283419.1 miRNA MIR6874 3 +54405 chr7 HAVANA gene 5620047 5781739 7619.0 - 0 ENSG00000011275.18 protein_coding RNF216 2 OTTHUMG00000155500.4 ncRNA_host,overlapping_locus +54406 chr7 HAVANA gene 5823160 5854365 2302.0 + 0 ENSG00000235944.8 transcribed_unprocessed_pseudogene ZNF815P 2 OTTHUMG00000155501.3 +54407 chr7 ENSEMBL gene 5871753 5872050 298.0 - 0 ENSG00000277265.1 misc_RNA RN7SL556P 3 +54408 chr7 HAVANA gene 5879827 5886362 832.0 + 0 ENSG00000122543.10 protein_coding OCM 2 OTTHUMG00000155499.1 +54409 chr7 HAVANA gene 5898725 5926550 6431.0 + 0 ENSG00000122674.11 protein_coding CCZ1 2 OTTHUMG00000155502.1 +54410 chr7 HAVANA gene 5925550 5970683 4993.0 - 0 ENSG00000155026.16 protein_coding RSPH10B 2 OTTHUMG00000152378.7 +54411 chr7 ENSEMBL gene 6004283 6004385 103.0 - 0 ENSG00000201990.1 misc_RNA RF00019 3 +54412 chr7 HAVANA gene 5973239 6009125 3936.0 - 0 ENSG00000122512.15 protein_coding PMS2 2 OTTHUMG00000023135.9 ncRNA_host +54413 chr7 ENSEMBL gene 6016877 6017011 135.0 + 0 ENSG00000207217.1 snoRNA SNORA80D 3 +54414 chr7 HAVANA gene 6009245 6023834 1838.0 + 0 ENSG00000106305.9 protein_coding AIMP2 1 OTTHUMG00000122077.4 ncRNA_host +54415 chr7 HAVANA gene 6031376 6036386 1257.0 + 0 ENSG00000157999.5 protein_coding ANKRD61 1 OTTHUMG00000154561.2 +54416 chr7 ENSEMBL gene 6047721 6048023 303.0 - 0 ENSG00000240718.3 misc_RNA RN7SL851P 3 +54417 chr7 ENSEMBL gene 6057500 6057604 105.0 + 0 ENSG00000252929.1 snRNA RNU6-218P 3 +54418 chr7 HAVANA gene 6022244 6059230 5550.0 - 0 ENSG00000086232.12 protein_coding EIF2AK1 1 OTTHUMG00000090689.14 ncRNA_host +54419 chr7 HAVANA gene 6081103 6093085 820.0 + 0 ENSG00000231704.5 lincRNA AC004895.1 2 OTTHUMG00000151887.1 +54420 chr7 HAVANA gene 6104884 6161564 7072.0 + 0 ENSG00000106346.11 protein_coding USP42 1 OTTHUMG00000151888.4 +54421 chr7 ENSEMBL gene 6212638 6212740 103.0 - 0 ENSG00000202273.1 misc_RNA RF00019 3 +54422 chr7 HAVANA gene 6161776 6272644 5808.0 - 0 ENSG00000008256.15 protein_coding CYTH3 2 OTTHUMG00000023440.3 ncRNA_host +54423 chr7 HAVANA gene 6329409 6348981 2395.0 - 0 ENSG00000178397.12 protein_coding FAM220A 2 OTTHUMG00000122091.6 +54424 chr7 HAVANA gene 6365441 6365770 330.0 + 0 ENSG00000274319.1 processed_pseudogene RPSAP73 2 OTTHUMG00000187658.1 +54425 chr7 HAVANA gene 6374523 6403977 3114.0 + 0 ENSG00000136238.17 protein_coding RAC1 2 OTTHUMG00000023540.4 +54426 chr7 HAVANA gene 6409126 6484190 5756.0 - 0 ENSG00000164535.14 protein_coding DAGLB 1 OTTHUMG00000125513.4 overlapping_locus +54427 chr7 HAVANA gene 6445953 6484242 3990.0 - 0 ENSG00000136240.9 protein_coding KDELR2 2 OTTHUMG00000023103.4 overlapping_locus +54428 chr7 HAVANA gene 6490793 6491098 306.0 - 0 ENSG00000231359.3 processed_pseudogene AC072052.1 1 OTTHUMG00000155529.1 pseudo_consens +54429 chr7 HAVANA gene 6497462 6551436 4134.0 - 0 ENSG00000215045.8 protein_coding GRID2IP 1 OTTHUMG00000155531.2 +54430 chr7 HAVANA gene 6578565 6588974 357.0 - 0 ENSG00000232581.1 antisense AC079742.1 2 OTTHUMG00000151848.1 +54431 chr7 HAVANA gene 6577434 6589374 3557.0 + 0 ENSG00000136247.14 protein_coding ZDHHC4 2 OTTHUMG00000023579.5 +54432 chr7 HAVANA gene 6590017 6608726 2728.0 + 0 ENSG00000146576.12 protein_coding C7orf26 2 OTTHUMG00000125517.2 +54433 chr7 HAVANA gene 6615617 6624290 3857.0 + 0 ENSG00000236609.3 protein_coding ZNF853 1 OTTHUMG00000151853.3 +54434 chr7 HAVANA gene 6637322 6656432 5811.0 + 0 ENSG00000205903.6 protein_coding ZNF316 2 OTTHUMG00000151854.4 +54435 chr7 HAVANA gene 6673494 6676366 651.0 + 0 ENSG00000198580.7 unprocessed_pseudogene AC073343.1 2 OTTHUMG00000187157.1 overlapping_locus +54436 chr7 HAVANA gene 6688433 6706923 5297.0 - 0 ENSG00000164631.18 protein_coding ZNF12 1 OTTHUMG00000151910.3 +54437 chr7 HAVANA gene 6663974 6708901 1374.0 + 0 ENSG00000228010.5 antisense AC073343.2 1 OTTHUMG00000152372.1 overlapping_locus +54438 chr7 HAVANA gene 6715630 6720982 632.0 - 0 ENSG00000277327.1 unprocessed_pseudogene SPDYE20P 2 OTTHUMG00000187660.1 +54439 chr7 HAVANA gene 6710128 6753862 3879.0 + 0 ENSG00000187953.10 transcribed_unprocessed_pseudogene PMS2CL 2 OTTHUMG00000151857.1 +54440 chr7 HAVANA gene 6754109 6799365 4992.0 + 0 ENSG00000169402.15 protein_coding RSPH10B2 2 OTTHUMG00000151856.8 +54441 chr7 HAVANA gene 6794134 6826770 7316.0 - 0 ENSG00000146574.15 protein_coding CCZ1B 2 OTTHUMG00000152441.3 +54442 chr7 HAVANA gene 6835420 6835794 375.0 - 0 ENSG00000273252.1 unprocessed_pseudogene OR7E39P 2 OTTHUMG00000185867.1 +54443 chr7 HAVANA gene 6855485 6859830 730.0 - 0 ENSG00000155070.8 processed_pseudogene UNC93B2 2 OTTHUMG00000151911.1 +54444 chr7 HAVANA gene 6866658 6867672 1015.0 - 0 ENSG00000205897.5 unprocessed_pseudogene OR7E136P 1 OTTHUMG00000158488.1 pseudo_consens +54445 chr7 HAVANA gene 6879627 6880626 1000.0 - 0 ENSG00000250561.2 unprocessed_pseudogene OR7E59P 1 OTTHUMG00000158490.2 pseudo_consens +54446 chr7 HAVANA gene 6900424 6900623 200.0 - 0 ENSG00000243531.1 processed_pseudogene AC079804.2 2 OTTHUMG00000158494.1 +54447 chr7 HAVANA gene 6924078 6924513 436.0 - 0 ENSG00000241539.1 processed_pseudogene AC079804.1 2 OTTHUMG00000158491.1 +54448 chr7 HAVANA gene 6923804 6930835 771.0 + 0 ENSG00000226943.3 unprocessed_pseudogene ALG1L5P 2 OTTHUMG00000158492.1 +54449 chr7 HAVANA gene 6931684 6939603 853.0 - 0 ENSG00000242731.3 unprocessed_pseudogene FAM86LP 2 OTTHUMG00000158493.1 +54450 chr7 ENSEMBL gene 7066964 7067045 82.0 - 0 ENSG00000266287.1 miRNA MIR3683 3 +54451 chr7 HAVANA gene 7078302 7079742 1441.0 - 0 ENSG00000239696.3 processed_pseudogene AC092104.1 2 OTTHUMG00000158489.2 +54452 chr7 ENSEMBL gene 7102573 7102681 109.0 - 0 ENSG00000201218.1 misc_RNA RF00019 3 +54453 chr7 HAVANA gene 7177952 7178324 373.0 + 0 ENSG00000244167.1 processed_pseudogene AC005532.2 1 OTTHUMG00000158487.1 pseudo_consens,overlapping_locus +54454 chr7 HAVANA gene 7156934 7248651 7805.0 + 0 ENSG00000106392.10 protein_coding C1GALT1 2 OTTHUMG00000151912.4 overlapping_locus +54455 chr7 HAVANA gene 7255154 7277779 1237.0 + 0 ENSG00000230825.1 processed_transcript AC005532.1 1 OTTHUMG00000151907.1 +54456 chr7 HAVANA gene 7293508 7293880 373.0 + 0 ENSG00000236712.1 processed_pseudogene AC079448.1 1 OTTHUMG00000152425.1 pseudo_consens +54457 chr7 HAVANA gene 7356203 7535853 6619.0 - 0 ENSG00000215018.9 protein_coding COL28A1 1 OTTHUMG00000150034.2 +54458 chr7 HAVANA gene 7550104 7552440 1655.0 - 0 ENSG00000272732.1 lincRNA AC004982.1 2 OTTHUMG00000186148.1 +54459 chr7 HAVANA gene 7552462 7566996 1730.0 - 0 ENSG00000272894.5 lincRNA AC004982.2 2 OTTHUMG00000186149.1 +54460 chr7 HAVANA gene 7566872 7608929 6714.0 + 0 ENSG00000164654.15 protein_coding MIOS 2 OTTHUMG00000152440.3 +54461 chr7 HAVANA gene 7619872 7620543 672.0 + 0 ENSG00000272745.1 lincRNA AC004948.1 2 OTTHUMG00000186159.1 +54462 chr7 HAVANA gene 7636518 7718607 3232.0 - 0 ENSG00000106399.11 protein_coding RPA3 2 OTTHUMG00000023748.5 +54463 chr7 HAVANA gene 7735743 7736851 1109.0 - 0 ENSG00000270314.1 processed_pseudogene AC007161.2 1 OTTHUMG00000184637.1 pseudo_consens +54464 chr7 HAVANA gene 7738524 7742574 1496.0 - 0 ENSG00000234718.7 transcribed_processed_pseudogene AC007161.1 1 OTTHUMG00000152016.7 pseudo_consens +54465 chr7 ENSEMBL gene 7906519 7906624 106.0 + 0 ENSG00000201747.1 snRNA RNU6-534P 3 +54466 chr7 HAVANA gene 7909300 7910449 1150.0 - 0 ENSG00000214998.2 processed_pseudogene CCNB2P1 1 OTTHUMG00000152021.1 pseudo_consens +54467 chr7 HAVANA gene 7949853 7950709 692.0 - 0 ENSG00000234141.1 antisense AC006042.4 2 OTTHUMG00000152026.1 +54468 chr7 HAVANA gene 7640711 7968020 3752.0 + 0 ENSG00000219545.11 protein_coding UMAD1 2 OTTHUMG00000152007.5 ncRNA_host,overlapping_locus +54469 chr7 HAVANA gene 7958183 7969903 568.0 - 0 ENSG00000233108.1 antisense AC006042.2 1 OTTHUMG00000152017.1 +54470 chr7 HAVANA gene 7980312 7982228 1469.0 + 0 ENSG00000233264.2 processed_pseudogene AC006042.3 1 OTTHUMG00000152027.1 pseudo_consens,overlapping_locus +54471 chr7 HAVANA gene 7640752 8004053 637.0 + 0 ENSG00000283549.1 processed_transcript AC007161.3 2 OTTHUMG00000191761.1 ncRNA_host +54472 chr7 HAVANA gene 7968794 8094272 6885.0 + 0 ENSG00000106415.12 protein_coding GLCCI1 2 OTTHUMG00000151984.4 overlapping_locus +54473 chr7 HAVANA gene 8114025 8116561 524.0 + 0 ENSG00000227719.1 antisense AC006042.1 1 OTTHUMG00000152019.1 +54474 chr7 HAVANA gene 8113184 8262687 4891.0 - 0 ENSG00000003147.18 protein_coding ICA1 2 OTTHUMG00000152008.10 +54475 chr7 HAVANA gene 8262233 8262821 429.0 + 0 ENSG00000244239.1 antisense AC007009.1 2 OTTHUMG00000152018.1 overlapping_locus +54476 chr7 HAVANA gene 8303741 8341343 916.0 + 0 ENSG00000272328.1 lincRNA AC007128.2 2 OTTHUMG00000151948.3 overlapping_locus +54477 chr7 HAVANA gene 8262264 8344516 1853.0 + 0 ENSG00000229970.3 antisense AC007128.1 2 OTTHUMG00000185587.1 overlapping_locus +54478 chr7 HAVANA gene 8433955 8752963 3430.0 + 0 ENSG00000122584.12 protein_coding NXPH1 2 OTTHUMG00000151941.3 +54479 chr7 HAVANA gene 8938787 8939369 583.0 + 0 ENSG00000236748.1 processed_pseudogene AC009500.1 1 OTTHUMG00000152006.1 pseudo_consens +54480 chr7 HAVANA gene 9084022 9084175 154.0 + 0 ENSG00000271526.1 processed_pseudogene AC004852.1 1 OTTHUMG00000184488.1 pseudo_consens +54481 chr7 HAVANA gene 9170948 9171273 326.0 - 0 ENSG00000278446.1 processed_pseudogene AC004852.3 2 OTTHUMG00000187664.1 +54482 chr7 HAVANA gene 9082557 9189857 3362.0 - 0 ENSG00000278254.4 lincRNA AC004852.2 2 OTTHUMG00000189027.1 +54483 chr7 HAVANA gene 9614978 9615985 1008.0 + 0 ENSG00000233876.2 processed_pseudogene GAPDHP68 1 OTTHUMG00000151930.2 pseudo_consens +54484 chr7 HAVANA gene 9634270 9635703 829.0 + 0 ENSG00000271077.1 processed_pseudogene PER4 1 OTTHUMG00000151929.2 pseudo_consens +54485 chr7 HAVANA gene 9726241 9728272 2032.0 + 0 ENSG00000197320.5 processed_pseudogene AC060834.1 1 OTTHUMG00000151926.1 pseudo_consens +54486 chr7 HAVANA gene 9737322 9769513 618.0 + 0 ENSG00000234710.1 lincRNA AC060834.2 2 OTTHUMG00000151925.1 +54487 chr7 HAVANA gene 9850924 9851386 463.0 + 0 ENSG00000270611.1 processed_pseudogene AC006363.1 1 OTTHUMG00000184487.1 pseudo_consens +54488 chr7 HAVANA gene 9961024 9981817 361.0 + 0 ENSG00000235431.1 lincRNA AC004936.1 2 OTTHUMG00000151921.1 +54489 chr7 ENSEMBL gene 10222797 10223011 215.0 + 0 ENSG00000212422.2 snoRNA RF00012 3 +54490 chr7 HAVANA gene 10451311 10453252 1942.0 + 0 ENSG00000229091.3 processed_pseudogene HSPA8P8 1 OTTHUMG00000151920.2 pseudo_consens +54491 chr7 HAVANA gene 10476581 10476878 298.0 + 0 ENSG00000234356.1 processed_pseudogene AC009945.1 1 OTTHUMG00000151924.1 pseudo_consens +54492 chr7 HAVANA gene 10702676 10707406 449.0 + 0 ENSG00000236414.1 lincRNA AC004415.1 1 OTTHUMG00000151923.1 +54493 chr7 HAVANA gene 10449820 10779944 3118.0 - 0 ENSG00000283117.1 lincRNA AC004949.1 2 OTTHUMG00000191550.2 +54494 chr7 ENSEMBL gene 10901978 10902074 97.0 + 0 ENSG00000201774.1 misc_RNA RF00019 3 +54495 chr7 HAVANA gene 10931951 10940256 3556.0 - 0 ENSG00000189043.9 protein_coding NDUFA4 2 OTTHUMG00000023880.5 +54496 chr7 HAVANA gene 10940423 10940735 313.0 + 0 ENSG00000271185.1 lincRNA AC007029.1 2 OTTHUMG00000185253.1 +54497 chr7 HAVANA gene 11006399 11006876 478.0 - 0 ENSG00000230370.1 processed_pseudogene RPL23AP52 1 OTTHUMG00000152347.1 pseudo_consens +54498 chr7 HAVANA gene 10973336 11169630 14051.0 + 0 ENSG00000106443.16 protein_coding PHF14 2 OTTHUMG00000150463.5 +54499 chr7 HAVANA gene 11257681 11258535 855.0 - 0 ENSG00000226827.1 processed_pseudogene NPM1P11 1 OTTHUMG00000152312.1 pseudo_consens +54500 chr7 HAVANA gene 11406955 11414078 563.0 + 0 ENSG00000230435.1 antisense AC004160.2 1 OTTHUMG00000152344.1 overlapping_locus +54501 chr7 HAVANA gene 11180902 11520175 5660.0 + 0 ENSG00000230333.6 processed_transcript AC004160.1 2 OTTHUMG00000152311.6 overlapping_locus +54502 chr7 HAVANA gene 11820317 11821294 978.0 - 0 ENSG00000235920.1 processed_pseudogene AC073109.1 1 OTTHUMG00000152345.1 pseudo_consens,overlapping_locus +54503 chr7 HAVANA gene 11370357 11832198 10929.0 - 0 ENSG00000005108.15 protein_coding THSD7A 2 OTTHUMG00000152346.4 overlapping_locus +54504 chr7 HAVANA gene 12211241 12243367 13867.0 + 0 ENSG00000106460.18 protein_coding TMEM106B 2 OTTHUMG00000125537.7 +54505 chr7 HAVANA gene 12330885 12403941 6490.0 - 0 ENSG00000146530.13 protein_coding VWDE 2 OTTHUMG00000152315.8 +54506 chr7 HAVANA gene 12439419 12440404 986.0 - 0 ENSG00000274970.1 processed_pseudogene AC013470.4 1 OTTHUMG00000187665.1 pseudo_consens +54507 chr7 HAVANA gene 12471352 12472545 1194.0 + 0 ENSG00000236048.2 processed_pseudogene AC013470.3 1 OTTHUMG00000152382.1 pseudo_consens +54508 chr7 HAVANA gene 12491095 12492004 910.0 + 0 ENSG00000203523.3 processed_pseudogene TAS2R2P 2 OTTHUMG00000152381.1 +54509 chr7 HAVANA gene 12506007 12507478 462.0 + 0 ENSG00000224667.1 processed_pseudogene AC013470.1 1 OTTHUMG00000152380.2 pseudo_consens,overlapping_locus +54510 chr7 HAVANA gene 12469621 12542222 3737.0 + 0 ENSG00000226690.8 protein_coding AC013470.2 2 OTTHUMG00000152383.5 overlapping_locus +54511 chr7 HAVANA gene 12570125 12571392 911.0 - 0 ENSG00000225606.1 antisense AC005281.1 2 OTTHUMG00000152384.1 +54512 chr7 HAVANA gene 12654179 12654985 432.0 + 0 ENSG00000229233.1 sense_overlapping AC011891.1 1 OTTHUMG00000190259.1 +54513 chr7 HAVANA gene 12570577 12660179 11623.0 + 0 ENSG00000006747.14 protein_coding SCIN 1 OTTHUMG00000152385.4 +54514 chr7 HAVANA gene 12685637 12686033 397.0 + 0 ENSG00000271253.1 processed_pseudogene AC011891.2 1 OTTHUMG00000184480.1 pseudo_consens +54515 chr7 HAVANA gene 12686856 12690934 3561.0 + 0 ENSG00000122644.12 protein_coding ARL4A 2 OTTHUMG00000023374.5 +54516 chr7 ENSEMBL gene 12700758 12700889 132.0 - 0 ENSG00000199470.1 snoRNA RF00264 3 +54517 chr7 ENSEMBL gene 12876684 12876946 263.0 + 0 ENSG00000222974.1 misc_RNA RN7SKP228 3 +54518 chr7 HAVANA gene 12922545 12922920 376.0 - 0 ENSG00000230879.1 processed_pseudogene RBMX2P4 1 OTTHUMG00000152351.1 pseudo_consens +54519 chr7 HAVANA gene 13339201 13365049 842.0 - 0 ENSG00000237713.1 lincRNA AC011287.2 2 OTTHUMG00000152350.1 +54520 chr7 HAVANA gene 12726152 13751920 5389.0 + 0 ENSG00000229618.2 lincRNA AC011287.1 2 OTTHUMG00000152349.3 ncRNA_host +54521 chr7 HAVANA gene 13854355 13859025 359.0 - 0 ENSG00000224330.1 lincRNA AC005019.2 1 OTTHUMG00000152366.1 +54522 chr7 HAVANA gene 13871856 13872513 431.0 + 0 ENSG00000213875.3 processed_pseudogene AC005019.1 1 OTTHUMG00000152365.1 pseudo_consens +54523 chr7 HAVANA gene 13891228 13991425 9616.0 - 0 ENSG00000006468.13 protein_coding ETV1 1 OTTHUMG00000152403.6 +54524 chr7 ENSEMBL gene 14010669 14010763 95.0 - 0 ENSG00000252374.1 misc_RNA RF00019 3 +54525 chr7 HAVANA gene 14070535 14071380 846.0 - 0 ENSG00000223445.1 processed_pseudogene RPL6P21 1 OTTHUMG00000152410.2 pseudo_consens +54526 chr7 HAVANA gene 14190795 14192157 1363.0 + 0 ENSG00000233167.1 processed_pseudogene EEF1A1P26 1 OTTHUMG00000152411.1 pseudo_consens +54527 chr7 HAVANA gene 14814131 14816565 263.0 + 0 ENSG00000226323.1 antisense AC006150.1 1 OTTHUMG00000152476.1 +54528 chr7 HAVANA gene 14145049 14974777 9491.0 - 0 ENSG00000136267.13 protein_coding DGKB 2 OTTHUMG00000152477.3 +54529 chr7 HAVANA gene 14985378 14986074 697.0 - 0 ENSG00000225816.1 processed_pseudogene GTF3AP5 2 OTTHUMG00000152478.1 +54530 chr7 HAVANA gene 15066207 15068651 653.0 + 0 ENSG00000227489.1 lincRNA AC006458.1 2 OTTHUMG00000152389.1 +54531 chr7 HAVANA gene 15200318 15562015 3587.0 - 0 ENSG00000187546.13 protein_coding AGMO 1 OTTHUMG00000152387.4 +54532 chr7 HAVANA gene 15667947 15681980 3743.0 + 0 ENSG00000237070.1 antisense AC005550.2 2 OTTHUMG00000152391.1 +54533 chr7 HAVANA gene 15611212 15686812 2500.0 - 0 ENSG00000106511.5 protein_coding MEOX2 2 OTTHUMG00000152390.2 +54534 chr7 HAVANA gene 15689075 15690854 312.0 - 0 ENSG00000225974.1 lincRNA AC005550.1 1 OTTHUMG00000152392.1 +54535 chr7 HAVANA gene 15688378 15695491 697.0 + 0 ENSG00000229108.1 lincRNA LINC02587 1 OTTHUMG00000152388.1 +54536 chr7 HAVANA gene 15701435 15701752 318.0 - 0 ENSG00000235828.5 processed_pseudogene RPL36AP26 1 OTTHUMG00000152393.1 pseudo_consens +54537 chr7 HAVANA gene 15841297 15842360 328.0 - 0 ENSG00000229379.1 lincRNA AC006041.1 2 OTTHUMG00000152394.1 +54538 chr7 HAVANA gene 16208945 16209265 321.0 + 0 ENSG00000224683.1 processed_pseudogene RPL36AP29 1 OTTHUMG00000152449.1 pseudo_consens +54539 chr7 HAVANA gene 16210488 16270604 2772.0 + 0 ENSG00000229688.7 antisense ISPD-AS1 2 OTTHUMG00000152466.2 +54540 chr7 HAVANA gene 16087527 16421322 6309.0 - 0 ENSG00000214960.9 protein_coding ISPD 2 OTTHUMG00000152447.5 +54541 chr7 HAVANA gene 16471184 16471373 190.0 + 0 ENSG00000272537.1 lincRNA AC005014.3 2 OTTHUMG00000185323.1 +54542 chr7 HAVANA gene 16461481 16530580 2473.0 - 0 ENSG00000171243.7 protein_coding SOSTDC1 1 OTTHUMG00000090807.1 +54543 chr7 HAVANA gene 16526880 16581568 1386.0 + 0 ENSG00000205858.9 protein_coding LRRC72 2 OTTHUMG00000152446.2 +54544 chr7 HAVANA gene 16583782 16586757 2976.0 - 0 ENSG00000224280.1 processed_pseudogene AC005014.1 1 OTTHUMG00000152445.1 pseudo_consens +54545 chr7 HAVANA gene 16593626 16594224 599.0 - 0 ENSG00000272361.2 lincRNA AC005014.2 2 OTTHUMG00000185324.2 +54546 chr7 HAVANA gene 16599776 16645817 2854.0 - 0 ENSG00000106524.8 protein_coding ANKMY2 2 OTTHUMG00000090806.2 +54547 chr7 HAVANA gene 16646131 16706523 3662.0 + 0 ENSG00000136261.14 protein_coding BZW2 2 OTTHUMG00000130755.6 +54548 chr7 HAVANA gene 16695871 16719898 648.0 - 0 ENSG00000235837.1 antisense AC073333.1 1 OTTHUMG00000152479.1 +54549 chr7 HAVANA gene 16753535 16784536 2224.0 + 0 ENSG00000106537.7 protein_coding TSPAN13 2 OTTHUMG00000022968.5 +54550 chr7 HAVANA gene 16791811 16833433 2845.0 - 0 ENSG00000106541.11 protein_coding AGR2 1 OTTHUMG00000023446.4 +54551 chr7 HAVANA gene 16849957 16850725 769.0 - 0 ENSG00000270593.1 processed_pseudogene AC073333.2 1 OTTHUMG00000184654.1 pseudo_consens +54552 chr7 HAVANA gene 16864267 16866308 2042.0 - 0 ENSG00000232400.1 processed_pseudogene RAD17P1 1 OTTHUMG00000152462.2 pseudo_consens,overlapping_locus +54553 chr7 HAVANA gene 16859405 16881987 1160.0 - 0 ENSG00000173467.8 protein_coding AGR3 2 OTTHUMG00000128411.3 overlapping_locus +54554 chr7 HAVANA gene 16888621 16888885 265.0 + 0 ENSG00000227965.1 processed_pseudogene AC098592.2 1 OTTHUMG00000152465.1 pseudo_consens +54555 chr7 HAVANA gene 16938225 16938557 333.0 + 0 ENSG00000223867.1 processed_pseudogene AC098592.1 1 OTTHUMG00000152464.1 pseudo_consens +54556 chr7 HAVANA gene 17033089 17033478 390.0 - 0 ENSG00000232841.1 processed_pseudogene BRWD1P3 1 OTTHUMG00000152463.1 pseudo_consens +54557 chr7 ENSEMBL gene 17205652 17205928 277.0 + 0 ENSG00000278569.1 misc_RNA RF00017 3 +54558 chr7 HAVANA gene 16970320 17299357 3957.0 - 0 ENSG00000237773.6 antisense AC073332.1 2 OTTHUMG00000152468.2 +54559 chr7 HAVANA gene 16916359 17346152 8081.0 + 0 ENSG00000106546.13 protein_coding AHR 2 OTTHUMG00000149967.4 ncRNA_host +54560 chr7 ENSEMBL gene 17373201 17373326 126.0 - 0 ENSG00000199473.1 snoRNA RF00092 3 +54561 chr7 HAVANA gene 17299295 17467234 3523.0 + 0 ENSG00000283321.1 protein_coding AC019117.2 2 OTTHUMG00000191686.1 +54562 chr7 HAVANA gene 17374867 17467256 1957.0 + 0 ENSG00000236318.2 lincRNA KCCAT333 2 OTTHUMG00000152729.2 +54563 chr7 HAVANA gene 17405479 17558909 2232.0 - 0 ENSG00000236039.2 lincRNA AC019117.1 2 OTTHUMG00000152731.2 +54564 chr7 HAVANA gene 17679549 17680659 273.0 + 0 ENSG00000228675.1 lincRNA AC006482.1 1 OTTHUMG00000152728.1 +54565 chr7 HAVANA gene 17790761 17940501 16418.0 - 0 ENSG00000071189.21 protein_coding SNX13 1 OTTHUMG00000152730.5 +54566 chr7 HAVANA gene 17940503 17942922 2420.0 + 0 ENSG00000279048.1 TEC AC080080.1 2 OTTHUMG00000173367.1 +54567 chr7 HAVANA gene 17962079 17963029 951.0 + 0 ENSG00000236195.1 processed_pseudogene RNMTL1P2 1 OTTHUMG00000152741.1 pseudo_consens +54568 chr7 HAVANA gene 18000290 18000879 590.0 - 0 ENSG00000280340.1 TEC AC080080.2 2 OTTHUMG00000173136.1 +54569 chr7 HAVANA gene 18026774 18027863 1090.0 - 0 ENSG00000229937.6 protein_coding PRPS1L1 2 OTTHUMG00000152742.1 retrogene +54570 chr7 ENSEMBL gene 18127220 18127309 90.0 - 0 ENSG00000221393.1 miRNA MIR1302-6 3 +54571 chr7 HAVANA gene 18429062 18430738 546.0 - 0 ENSG00000225000.1 antisense AC010082.1 2 OTTHUMG00000152508.1 +54572 chr7 ENSEMBL gene 18807993 18808279 287.0 - 0 ENSG00000222164.1 misc_RNA RN7SKP266 3 +54573 chr7 HAVANA gene 18892096 18899433 313.0 - 0 ENSG00000226522.1 antisense AC004994.1 2 OTTHUMG00000152543.1 +54574 chr7 HAVANA gene 18948898 18949762 865.0 - 0 ENSG00000232492.1 processed_pseudogene NPM1P13 1 OTTHUMG00000152542.1 pseudo_consens +54575 chr7 HAVANA gene 18086949 19002416 16827.0 + 0 ENSG00000048052.21 protein_coding HDAC9 1 OTTHUMG00000152487.8 +54576 chr7 HAVANA gene 19112474 19114271 1711.0 + 0 ENSG00000232821.1 antisense AC003986.2 2 OTTHUMG00000152496.1 +54577 chr7 HAVANA gene 19020991 19117672 2033.0 - 0 ENSG00000122691.12 protein_coding TWIST1 2 OTTHUMG00000090821.3 +54578 chr7 HAVANA gene 19119933 19121916 692.0 + 0 ENSG00000236536.1 antisense AC003986.3 2 OTTHUMG00000152498.1 +54579 chr7 HAVANA gene 19144782 19145421 640.0 - 0 ENSG00000146618.3 protein_coding FERD3L 2 OTTHUMG00000090823.1 +54580 chr7 HAVANA gene 19144293 19146253 1526.0 + 0 ENSG00000229533.1 antisense AC003986.1 2 OTTHUMG00000152490.1 +54581 chr7 HAVANA gene 19353534 19578606 566.0 + 0 ENSG00000223838.1 lincRNA AC007091.1 2 OTTHUMG00000152489.1 +54582 chr7 ENSEMBL gene 19705358 19705436 79.0 - 0 ENSG00000265932.1 miRNA MIR3146 3 +54583 chr7 HAVANA gene 19695462 19709087 3997.0 - 0 ENSG00000105849.5 protein_coding TWISTNB 2 OTTHUMG00000152497.1 ncRNA_host +54584 chr7 HAVANA gene 19719310 19773598 4087.0 - 0 ENSG00000173452.13 protein_coding TMEM196 2 OTTHUMG00000152504.3 +54585 chr7 HAVANA gene 19813685 19818090 369.0 - 0 ENSG00000237921.2 lincRNA AC004543.1 2 OTTHUMG00000152511.1 +54586 chr7 HAVANA gene 20002765 20003247 483.0 + 0 ENSG00000213860.4 processed_pseudogene RPL21P75 2 OTTHUMG00000152536.1 +54587 chr7 HAVANA gene 20096137 20130475 670.0 + 0 ENSG00000267055.1 lincRNA AC007001.1 2 OTTHUMG00000182356.1 +54588 chr7 HAVANA gene 19918981 20140453 2564.0 - 0 ENSG00000243004.5 sense_overlapping AC005062.1 1 OTTHUMG00000152535.1 overlapping_locus +54589 chr7 HAVANA gene 20141916 20153531 639.0 + 0 ENSG00000228598.1 antisense MACC1-AS1 2 OTTHUMG00000152534.1 +54590 chr7 HAVANA gene 20134655 20217404 9898.0 - 0 ENSG00000183742.12 protein_coding MACC1 2 OTTHUMG00000128415.5 overlapping_locus +54591 chr7 HAVANA gene 20217577 20221700 901.0 + 0 ENSG00000233834.6 processed_transcript AC005083.1 2 OTTHUMG00000152503.1 +54592 chr7 HAVANA gene 20296708 20311712 1477.0 + 0 ENSG00000226097.5 lincRNA AC099342.1 2 OTTHUMG00000152502.1 +54593 chr7 HAVANA gene 20328299 20331747 896.0 - 0 ENSG00000271133.5 antisense AC004130.1 2 OTTHUMG00000185140.1 +54594 chr7 ENSEMBL gene 20377331 20377401 71.0 + 0 ENSG00000200753.1 snoRNA RF00275 3 +54595 chr7 HAVANA gene 20330702 20415754 15156.0 + 0 ENSG00000105855.9 protein_coding ITGB8 2 OTTHUMG00000023594.5 ncRNA_host +54596 chr7 HAVANA gene 20582072 20583206 1135.0 + 0 ENSG00000179460.5 processed_pseudogene EEF1A1P27 1 OTTHUMG00000152499.1 pseudo_consens +54597 chr7 HAVANA gene 20588990 20590085 590.0 + 0 ENSG00000231525.1 processed_pseudogene AC002486.2 1 OTTHUMG00000152500.1 pseudo_consens +54598 chr7 HAVANA gene 20641558 20641948 391.0 - 0 ENSG00000223866.1 processed_pseudogene AC002486.1 1 OTTHUMG00000152588.1 pseudo_consens +54599 chr7 HAVANA gene 20615207 20777038 9257.0 + 0 ENSG00000004846.16 protein_coding ABCB5 1 OTTHUMG00000094789.7 +54600 chr7 HAVANA gene 20782283 20786886 3718.0 - 0 ENSG00000164651.16 protein_coding SP8 2 OTTHUMG00000094788.4 +54601 chr7 HAVANA gene 20827326 20827753 428.0 + 0 ENSG00000219451.3 processed_pseudogene RPL23P8 1 OTTHUMG00000152587.1 pseudo_consens +54602 chr7 HAVANA gene 20843627 20843961 335.0 + 0 ENSG00000234839.1 processed_pseudogene RPS26P30 1 OTTHUMG00000152586.1 pseudo_consens,overlapping_locus +54603 chr7 HAVANA gene 20835431 21023148 447.0 + 0 ENSG00000232790.2 lincRNA LINC01162 2 OTTHUMG00000152589.2 overlapping_locus +54604 chr7 HAVANA gene 20959391 21028813 923.0 - 0 ENSG00000285592.1 lincRNA AC080068.1 2 OTTHUMG00000193113.1 +54605 chr7 ENSEMBL gene 21215537 21215830 294.0 - 0 ENSG00000243633.3 misc_RNA RN7SL542P 3 +54606 chr7 HAVANA gene 21220213 21221428 1216.0 - 0 ENSG00000225308.2 processed_pseudogene ASS1P11 1 OTTHUMG00000152549.1 pseudo_consens +54607 chr7 ENSEMBL gene 21381363 21381506 144.0 + 0 ENSG00000195024.2 snRNA RNU1-15P 3 +54608 chr7 HAVANA gene 21400920 21401613 368.0 - 0 ENSG00000229949.1 processed_pseudogene AC005094.1 1 OTTHUMG00000152550.2 pseudo_consens +54609 chr7 ENSEMBL gene 21471058 21471146 89.0 + 0 ENSG00000221783.1 miRNA MIR1183 3 +54610 chr7 HAVANA gene 21428034 21514822 6234.0 + 0 ENSG00000105866.14 protein_coding SP4 2 OTTHUMG00000094801.7 ncRNA_host +54611 chr7 HAVANA gene 21543215 21901839 15998.0 + 0 ENSG00000105877.17 protein_coding DNAH11 1 OTTHUMG00000152524.8 +54612 chr7 HAVANA gene 21900900 21946084 4074.0 - 0 ENSG00000164649.19 protein_coding CDCA7L 1 OTTHUMG00000128429.7 +54613 chr7 ENSEMBL gene 22298594 22298706 113.0 + 0 ENSG00000251993.1 rRNA_pseudogene RNA5SP227 3 +54614 chr7 HAVANA gene 22118238 22357144 10245.0 - 0 ENSG00000136237.18 protein_coding RAPGEF5 2 OTTHUMG00000152525.8 +54615 chr7 HAVANA gene 22510616 22511999 1384.0 - 0 ENSG00000233476.3 processed_pseudogene EEF1A1P6 1 OTTHUMG00000152528.1 pseudo_consens,overlapping_locus +54616 chr7 HAVANA gene 22563337 22573996 2432.0 + 0 ENSG00000232759.1 antisense AC002480.1 2 OTTHUMG00000152530.1 +54617 chr7 HAVANA gene 22589705 22591622 557.0 + 0 ENSG00000232949.1 antisense AC002480.2 1 OTTHUMG00000152531.1 +54618 chr7 HAVANA gene 22419444 22727613 6478.0 - 0 ENSG00000105889.15 protein_coding STEAP1B 2 OTTHUMG00000193419.2 +54619 chr7 HAVANA gene 22725395 22727620 1364.0 - 0 ENSG00000179428.2 antisense AC073072.1 2 OTTHUMG00000152547.1 +54620 chr7 HAVANA gene 22725884 22732002 2069.0 + 0 ENSG00000136244.11 protein_coding IL6 2 OTTHUMG00000023178.5 +54621 chr7 HAVANA gene 22747675 22748804 1130.0 - 0 ENSG00000228803.1 processed_pseudogene MTCYBP42 1 OTTHUMG00000152545.1 pseudo_consens +54622 chr7 HAVANA gene 22773646 22773993 348.0 - 0 ENSG00000234513.1 processed_pseudogene AC073072.2 2 OTTHUMG00000152546.1 +54623 chr7 HAVANA gene 22812628 22822852 1751.0 - 0 ENSG00000196683.10 protein_coding TOMM7 1 OTTHUMG00000094805.3 +54624 chr7 ENSEMBL gene 22856613 22856686 74.0 + 0 ENSG00000221740.1 snoRNA SNORD93 3 +54625 chr7 HAVANA gene 22854178 22861579 2627.0 + 0 ENSG00000228649.8 processed_transcript SNHG26 2 OTTHUMG00000152563.5 ncRNA_host +54626 chr7 HAVANA gene 22863874 22881350 1467.0 - 0 ENSG00000226329.2 unprocessed_pseudogene AC005682.1 2 OTTHUMG00000152564.2 +54627 chr7 HAVANA gene 22881893 22882390 498.0 + 0 ENSG00000226279.2 processed_pseudogene RPL12P10 1 OTTHUMG00000152581.1 pseudo_consens +54628 chr7 HAVANA gene 22889371 23014130 14499.0 - 0 ENSG00000122591.11 protein_coding FAM126A 1 OTTHUMG00000128435.3 +54629 chr7 HAVANA gene 23101228 23105703 2564.0 - 0 ENSG00000230658.1 lincRNA KLHL7-DT 2 OTTHUMG00000152580.1 +54630 chr7 HAVANA gene 23129178 23129841 664.0 + 0 ENSG00000230042.1 processed_pseudogene AK3P3 1 OTTHUMG00000152600.1 pseudo_consens,overlapping_locus +54631 chr7 HAVANA gene 23105758 23177914 7066.0 + 0 ENSG00000122550.17 protein_coding KLHL7 1 OTTHUMG00000094813.9 overlapping_locus +54632 chr7 HAVANA gene 23181827 23201011 4366.0 + 0 ENSG00000136243.16 protein_coding NUPL2 1 OTTHUMG00000096955.5 +54633 chr7 HAVANA gene 23200131 23206059 948.0 - 0 ENSG00000285926.1 antisense AC005082.2 2 OTTHUMG00000193039.1 +54634 chr7 HAVANA gene 23205787 23208045 2259.0 + 0 ENSG00000226816.3 lincRNA AC005082.1 2 OTTHUMG00000152653.3 +54635 chr7 HAVANA gene 23235967 23275108 5956.0 + 0 ENSG00000136235.16 protein_coding GPNMB 2 OTTHUMG00000022811.7 +54636 chr7 HAVANA gene 23298739 23311729 3851.0 + 0 ENSG00000156928.4 protein_coding MALSU1 1 OTTHUMG00000128443.2 +54637 chr7 HAVANA gene 23365618 23365976 359.0 + 0 ENSG00000232627.1 processed_pseudogene AC021876.1 2 OTTHUMG00000152680.1 +54638 chr7 ENSEMBL gene 23396446 23396516 71.0 + 0 ENSG00000212264.1 snoRNA SNORD65C 3 +54639 chr7 ENSEMBL gene 23450658 23450722 65.0 + 0 ENSG00000252590.1 snRNA RNU7-143P 3 +54640 chr7 HAVANA gene 23310209 23470467 8511.0 - 0 ENSG00000136231.13 protein_coding IGF2BP3 2 OTTHUMG00000128445.6 +54641 chr7 HAVANA gene 23480753 23480959 207.0 + 0 ENSG00000236654.2 processed_pseudogene AC079780.1 1 OTTHUMG00000152682.1 pseudo_consens +54642 chr7 HAVANA gene 23490473 23491364 892.0 + 0 ENSG00000232818.2 processed_pseudogene RPS2P32 1 OTTHUMG00000152681.1 pseudo_consens +54643 chr7 ENSEMBL gene 23491792 23491893 102.0 - 0 ENSG00000200847.1 misc_RNA RF00019 3 +54644 chr7 HAVANA gene 23504780 23532041 3516.0 - 0 ENSG00000164548.10 protein_coding TRA2A 2 OTTHUMG00000128459.3 +54645 chr7 HAVANA gene 23562459 23564261 1803.0 - 0 ENSG00000224785.1 processed_pseudogene AC006026.1 1 OTTHUMG00000152683.1 pseudo_consens +54646 chr7 HAVANA gene 23585062 23586355 1294.0 - 0 ENSG00000232553.3 processed_pseudogene CLK2P1 1 OTTHUMG00000152684.2 pseudo_consens +54647 chr7 HAVANA gene 23619333 23622826 571.0 + 0 ENSG00000227436.1 processed_pseudogene FCF1P1 1 OTTHUMG00000152690.1 pseudo_consens,overlapping_locus +54648 chr7 HAVANA gene 23597379 23644708 3550.0 + 0 ENSG00000169193.11 protein_coding CCDC126 1 OTTHUMG00000128461.6 overlapping_locus +54649 chr7 HAVANA gene 23655682 23655861 180.0 + 0 ENSG00000228953.1 processed_pseudogene AC006026.2 1 OTTHUMG00000152692.1 pseudo_consens +54650 chr7 HAVANA gene 23680195 23680786 143.0 - 0 ENSG00000234286.1 antisense AC006026.3 2 OTTHUMG00000152691.1 +54651 chr7 HAVANA gene 23680130 23703249 7458.0 + 0 ENSG00000188732.10 protein_coding FAM221A 1 OTTHUMG00000128463.3 +54652 chr7 HAVANA gene 23721311 23721782 472.0 - 0 ENSG00000234800.2 processed_pseudogene PCMTD1P3 1 OTTHUMG00000152551.1 pseudo_consens +54653 chr7 HAVANA gene 23811144 23811660 517.0 - 0 ENSG00000231328.1 processed_pseudogene TPT1P7 1 OTTHUMG00000152552.2 pseudo_consens +54654 chr7 HAVANA gene 23710167 23832513 6183.0 + 0 ENSG00000196335.12 protein_coding STK31 2 OTTHUMG00000023053.9 +54655 chr7 HAVANA gene 23891704 23897335 499.0 - 0 ENSG00000227930.1 lincRNA AC003087.1 1 OTTHUMG00000152555.1 +54656 chr7 ENSEMBL gene 24132705 24132837 133.0 + 0 ENSG00000252041.1 rRNA_pseudogene RNA5SP228 3 +54657 chr7 HAVANA gene 24196662 24255719 527.0 - 0 ENSG00000228944.1 antisense AC004485.1 2 OTTHUMG00000152567.1 +54658 chr7 HAVANA gene 24284163 24291865 921.0 + 0 ENSG00000122585.7 protein_coding NPY 2 OTTHUMG00000022973.4 +54659 chr7 ENSEMBL gene 24537332 24537438 107.0 + 0 ENSG00000206877.1 snRNA RNU6-1103P 3 +54660 chr7 HAVANA gene 24589115 24589407 293.0 - 0 ENSG00000271096.1 processed_pseudogene SUMO2P14 1 OTTHUMG00000184657.1 pseudo_consens +54661 chr7 HAVANA gene 24674309 24674612 304.0 - 0 ENSG00000271330.1 processed_pseudogene AC005084.1 1 OTTHUMG00000184658.1 pseudo_consens +54662 chr7 HAVANA gene 24573268 24694193 9369.0 + 0 ENSG00000105926.15 protein_coding MPP6 2 OTTHUMG00000023507.11 +54663 chr7 HAVANA gene 24698351 24758113 8843.0 - 0 ENSG00000105928.14 protein_coding GSDME 1 OTTHUMG00000023237.9 +54664 chr7 HAVANA gene 24906135 24906594 460.0 - 0 ENSG00000234999.1 processed_pseudogene SNRPCP19 2 OTTHUMG00000152583.1 overlapping_locus +54665 chr7 HAVANA gene 24796539 24981634 8100.0 - 0 ENSG00000070882.12 protein_coding OSBPL3 2 OTTHUMG00000023277.7 overlapping_locus +54666 chr7 HAVANA gene 25120091 25125361 4457.0 - 0 ENSG00000172115.8 protein_coding CYCS 2 OTTHUMG00000128495.3 +54667 chr7 HAVANA gene 25134697 25180356 3837.0 - 0 ENSG00000153790.11 protein_coding C7orf31 2 OTTHUMG00000128497.3 +54668 chr7 HAVANA gene 25185623 25188724 287.0 + 0 ENSG00000234406.1 processed_pseudogene AC004129.2 2 OTTHUMG00000152598.1 +54669 chr7 HAVANA gene 25212170 25212965 796.0 - 0 ENSG00000213798.3 processed_pseudogene AC004129.1 1 OTTHUMG00000152595.2 pseudo_consens +54670 chr7 HAVANA gene 25224570 25228486 1190.0 - 0 ENSG00000105954.2 protein_coding NPVF 2 OTTHUMG00000128509.2 +54671 chr7 HAVANA gene 25254965 25257129 1792.0 - 0 ENSG00000285716.1 lincRNA AC004129.3 2 OTTHUMG00000192958.1 +54672 chr7 ENSEMBL gene 25264656 25264882 227.0 + 0 ENSG00000202233.2 snoRNA RF00012 3 +54673 chr7 HAVANA gene 25265924 25266290 367.0 - 0 ENSG00000234922.1 processed_pseudogene TSEN15P3 1 OTTHUMG00000152597.1 pseudo_consens +54674 chr7 HAVANA gene 25321302 25326815 362.0 - 0 ENSG00000233824.1 lincRNA AC003985.1 1 OTTHUMG00000152596.1 +54675 chr7 HAVANA gene 25358240 25359908 1669.0 - 0 ENSG00000260951.1 lincRNA AC003985.2 2 OTTHUMG00000173196.1 +54676 chr7 HAVANA gene 25431980 25500443 1379.0 + 0 ENSG00000285960.1 lincRNA AC005100.1 2 OTTHUMG00000192990.1 +54677 chr7 HAVANA gene 25547762 25551062 209.0 - 0 ENSG00000227386.1 lincRNA AC091705.1 2 OTTHUMG00000152593.1 +54678 chr7 HAVANA gene 25689580 25689959 380.0 - 0 ENSG00000239622.1 processed_pseudogene AC005165.2 1 OTTHUMG00000157986.1 pseudo_consens,overlapping_locus +54679 chr7 HAVANA gene 25593351 25750994 2968.0 - 0 ENSG00000223561.6 lincRNA AC005165.1 2 OTTHUMG00000152594.1 overlapping_locus +54680 chr7 HAVANA gene 25948657 25949403 747.0 - 0 ENSG00000270933.1 lincRNA AC010719.1 2 OTTHUMG00000185220.1 +54681 chr7 ENSEMBL gene 25949919 25949986 68.0 - 0 ENSG00000199085.3 miRNA MIR148A 3 +54682 chr7 HAVANA gene 26152240 26187125 4249.0 + 0 ENSG00000050344.8 protein_coding NFE2L3 2 OTTHUMG00000023882.4 +54683 chr7 HAVANA gene 26173057 26201529 9267.0 - 0 ENSG00000122566.21 protein_coding HNRNPA2B1 2 OTTHUMG00000023471.4 +54684 chr7 HAVANA gene 26201162 26213356 4641.0 + 0 ENSG00000122565.18 protein_coding CBX3 2 OTTHUMG00000022911.5 +54685 chr7 HAVANA gene 26226413 26254709 697.0 - 0 ENSG00000285860.1 lincRNA AC010677.2 2 OTTHUMG00000193386.1 +54686 chr7 HAVANA gene 26276195 26276606 412.0 + 0 ENSG00000232383.1 processed_pseudogene AC010677.1 1 OTTHUMG00000152802.1 pseudo_consens +54687 chr7 HAVANA gene 26291895 26374329 3518.0 + 0 ENSG00000086300.15 protein_coding SNX10 2 OTTHUMG00000023650.5 +54688 chr7 HAVANA gene 26372144 26376701 882.0 - 0 ENSG00000225792.1 antisense AC004540.2 2 OTTHUMG00000152805.2 +54689 chr7 HAVANA gene 26398593 26494256 1702.0 + 0 ENSG00000214870.8 lincRNA AC004540.1 2 OTTHUMG00000152806.2 +54690 chr7 HAVANA gene 26533121 26538788 4283.0 - 0 ENSG00000122548.5 lincRNA KIAA0087 2 OTTHUMG00000023321.2 +54691 chr7 HAVANA gene 26538378 26541048 2671.0 + 0 ENSG00000280255.1 TEC AC004947.2 2 OTTHUMG00000172768.2 +54692 chr7 HAVANA gene 26551822 26557200 2781.0 + 0 ENSG00000233760.1 lincRNA AC004947.1 2 OTTHUMG00000152862.1 +54693 chr7 HAVANA gene 26637871 26647305 2029.0 + 0 ENSG00000222004.7 lincRNA C7orf71 2 OTTHUMG00000152860.1 +54694 chr7 HAVANA gene 26922110 26922912 803.0 + 0 ENSG00000213787.3 processed_pseudogene RPL7AP38 1 OTTHUMG00000033538.2 pseudo_consens +54695 chr7 HAVANA gene 26982768 26983367 600.0 - 0 ENSG00000226059.2 processed_pseudogene HMGB3P20 1 OTTHUMG00000033539.2 pseudo_consens,overlapping_locus +54696 chr7 HAVANA gene 26667062 26995239 5520.0 - 0 ENSG00000005020.12 protein_coding SKAP2 2 OTTHUMG00000023495.4 overlapping_locus +54697 chr7 HAVANA gene 27023737 27024907 755.0 + 0 ENSG00000214869.5 processed_pseudogene TPM3P4 1 OTTHUMG00000033540.4 pseudo_consens +54698 chr7 HAVANA gene 27048169 27048628 460.0 + 0 ENSG00000213786.3 processed_pseudogene NHP2P2 1 OTTHUMG00000033542.2 pseudo_consens +54699 chr7 HAVANA gene 27092993 27095996 2539.0 - 0 ENSG00000105991.8 protein_coding HOXA1 1 OTTHUMG00000023207.5 +54700 chr7 ENSEMBL gene 27096124 27096248 125.0 + 0 ENSG00000276528.1 misc_RNA RF01975 3 +54701 chr7 ENSEMBL gene 27098900 27099114 215.0 + 0 ENSG00000276771.1 misc_RNA RF01976 3 +54702 chr7 ENSEMBL gene 27099778 27099836 59.0 + 0 ENSG00000274864.1 misc_RNA RF01977 3 +54703 chr7 ENSEMBL gene 27099856 27099957 102.0 + 0 ENSG00000274396.1 misc_RNA RF01978 3 +54704 chr7 ENSEMBL gene 27099967 27100111 145.0 + 0 ENSG00000277694.1 misc_RNA RF01979 3 +54705 chr7 HAVANA gene 27095647 27100265 1496.0 + 0 ENSG00000233429.9 antisense HOTAIRM1 1 OTTHUMG00000158089.4 ncRNA_host +54706 chr7 HAVANA gene 27100354 27102811 2458.0 - 0 ENSG00000105996.6 protein_coding HOXA2 2 OTTHUMG00000023208.6 +54707 chr7 HAVANA gene 27128507 27130799 1747.0 - 0 ENSG00000197576.13 protein_coding HOXA4 1 OTTHUMG00000023213.7 overlapping_locus +54708 chr7 HAVANA gene 27107777 27134302 5281.0 + 0 ENSG00000253552.7 antisense HOXA-AS2 1 OTTHUMG00000063274.5 overlapping_locus +54709 chr7 HAVANA gene 27141052 27143668 1707.0 - 0 ENSG00000106004.4 protein_coding HOXA5 2 OTTHUMG00000023214.3 overlapping_locus +54710 chr7 HAVANA gene 27145396 27150603 1285.0 - 0 ENSG00000106006.6 protein_coding HOXA6 1 OTTHUMG00000023216.7 overlapping_locus +54711 chr7 HAVANA gene 27128969 27152561 919.0 - 0 ENSG00000273433.1 processed_transcript AC004080.6 2 OTTHUMG00000186384.1 overlapping_locus +54712 chr7 HAVANA gene 27106184 27152581 4306.0 - 0 ENSG00000105997.22 protein_coding HOXA3 2 OTTHUMG00000023209.11 overlapping_locus +54713 chr7 HAVANA gene 27147366 27152598 368.0 - 0 ENSG00000272801.1 processed_transcript AC004080.5 2 OTTHUMG00000186385.1 overlapping_locus +54714 chr7 HAVANA gene 27129977 27155928 5967.0 + 0 ENSG00000254369.6 antisense HOXA-AS3 2 OTTHUMG00000158092.4 overlapping_locus +54715 chr7 HAVANA gene 27153716 27157936 2411.0 - 0 ENSG00000122592.7 protein_coding HOXA7 2 OTTHUMG00000023217.8 +54716 chr7 HAVANA gene 27158344 27158976 633.0 + 0 ENSG00000270182.1 sense_intronic AC004080.4 2 OTTHUMG00000189080.1 overlapping_locus +54717 chr7 ENSEMBL gene 27169480 27169563 84.0 - 0 ENSG00000283745.1 miRNA MIR196B 3 +54718 chr7 HAVANA gene 27168619 27171915 1654.0 + 0 ENSG00000253187.2 antisense HOXA10-AS 1 OTTHUMG00000158203.3 +54719 chr7 HAVANA gene 27162435 27175180 3029.0 - 0 ENSG00000078399.17 protein_coding HOXA9 1 OTTHUMG00000023220.8 ncRNA_host,overlapping_locus +54720 chr7 HAVANA gene 27163535 27180013 765.0 - 0 ENSG00000257184.3 protein_coding AC004080.3 2 OTTHUMG00000170193.2 ncRNA_host,overlapping_locus +54721 chr7 HAVANA gene 27170591 27180261 3707.0 - 0 ENSG00000253293.4 protein_coding HOXA10 1 OTTHUMG00000023436.6 overlapping_locus +54722 chr7 HAVANA gene 27181510 27185223 2307.0 - 0 ENSG00000005073.5 protein_coding HOXA11 1 OTTHUMG00000023437.6 +54723 chr7 ENSEMBL gene 27185433 27185530 98.0 + 0 ENSG00000273961.1 misc_RNA RF02137 3 +54724 chr7 ENSEMBL gene 27185832 27186018 187.0 + 0 ENSG00000278334.1 misc_RNA RF02138 3 +54725 chr7 ENSEMBL gene 27186166 27186263 98.0 + 0 ENSG00000276496.1 misc_RNA RF02139 3 +54726 chr7 ENSEMBL gene 27186892 27187124 233.0 + 0 ENSG00000277966.1 misc_RNA RF02140 3 +54727 chr7 ENSEMBL gene 27187819 27188021 203.0 + 0 ENSG00000278592.1 misc_RNA RF02141 3 +54728 chr7 ENSEMBL gene 27188816 27188994 179.0 + 0 ENSG00000278020.1 misc_RNA RF02142 3 +54729 chr7 HAVANA gene 27184507 27189298 3128.0 + 0 ENSG00000240990.10 antisense HOXA11-AS 1 OTTHUMG00000158205.4 ncRNA_host +54730 chr7 HAVANA gene 27186573 27193448 556.0 - 0 ENSG00000253508.1 lincRNA AC004080.2 2 OTTHUMG00000170067.1 +54731 chr7 HAVANA gene 27193503 27200106 5086.0 - 0 ENSG00000106031.8 protein_coding HOXA13 2 OTTHUMG00000023438.9 +54732 chr7 ENSEMBL gene 27200465 27200521 57.0 + 0 ENSG00000276609.1 misc_RNA RF02040 3 +54733 chr7 ENSEMBL gene 27201844 27202219 376.0 + 0 ENSG00000278708.1 misc_RNA RF02041 3 +54734 chr7 ENSEMBL gene 27202302 27202638 337.0 + 0 ENSG00000277469.1 misc_RNA RF02042 3 +54735 chr7 ENSEMBL gene 27206139 27206303 165.0 + 0 ENSG00000277553.1 misc_RNA RF02043 3 +54736 chr7 HAVANA gene 27198575 27207259 5016.0 + 0 ENSG00000243766.8 antisense HOTTIP 2 OTTHUMG00000063751.8 ncRNA_host +54737 chr7 HAVANA gene 27239243 27241228 757.0 - 0 ENSG00000253308.2 lincRNA AC004080.1 2 OTTHUMG00000159990.3 +54738 chr7 HAVANA gene 27241429 27247229 1361.0 - 0 ENSG00000253405.1 antisense EVX1-AS 1 OTTHUMG00000159991.1 +54739 chr7 HAVANA gene 27242700 27250493 3353.0 + 0 ENSG00000106038.12 protein_coding EVX1 2 OTTHUMG00000023093.11 +54740 chr7 HAVANA gene 27269357 27269678 322.0 - 0 ENSG00000213783.4 processed_pseudogene RPL35P4 1 OTTHUMG00000033372.3 pseudo_consens +54741 chr7 HAVANA gene 27328607 27329534 928.0 - 0 ENSG00000236569.3 processed_pseudogene HNRNPA1P73 1 OTTHUMG00000033395.4 pseudo_consens +54742 chr7 HAVANA gene 27380562 27381206 645.0 + 0 ENSG00000279655.1 TEC AC004009.3 2 OTTHUMG00000065294.1 overlapping_locus +54743 chr7 HAVANA gene 27361843 27409938 567.0 + 0 ENSG00000224322.1 lincRNA AC004009.1 2 OTTHUMG00000133703.1 overlapping_locus +54744 chr7 HAVANA gene 27412164 27412891 728.0 + 0 ENSG00000279429.1 TEC AC004009.2 2 OTTHUMG00000064693.1 +54745 chr7 HAVANA gene 27458163 27458849 687.0 - 0 ENSG00000233830.2 processed_pseudogene EIF4HP1 1 OTTHUMG00000152711.1 pseudo_consens +54746 chr7 HAVANA gene 27461766 27462969 1204.0 + 0 ENSG00000213781.3 processed_pseudogene PSMC1P2 1 OTTHUMG00000152713.1 pseudo_consens +54747 chr7 HAVANA gene 27491682 27492765 1084.0 - 0 ENSG00000235574.1 processed_pseudogene AC073150.1 1 OTTHUMG00000152712.1 pseudo_consens +54748 chr7 HAVANA gene 27525442 27662995 2323.0 - 0 ENSG00000106049.8 protein_coding HIBADH 1 OTTHUMG00000097035.4 +54749 chr7 HAVANA gene 27733064 27740395 1190.0 - 0 ENSG00000229893.2 antisense AC005091.1 2 OTTHUMG00000152710.2 +54750 chr7 HAVANA gene 27739331 27844564 9165.0 + 0 ENSG00000106052.13 protein_coding TAX1BP1 1 OTTHUMG00000023377.9 +54751 chr7 ENSEMBL gene 28118113 28118219 107.0 - 0 ENSG00000206623.1 snRNA RNU6-979P 3 +54752 chr7 HAVANA gene 27830573 28180743 4020.0 - 0 ENSG00000153814.12 protein_coding JAZF1 1 OTTHUMG00000128545.7 ncRNA_host +54753 chr7 HAVANA gene 28180322 28243917 4092.0 + 0 ENSG00000234336.6 antisense JAZF1-AS1 2 OTTHUMG00000152771.2 +54754 chr7 HAVANA gene 28279211 28279700 490.0 - 0 ENSG00000174495.12 processed_pseudogene PPIAP80 1 OTTHUMG00000152781.1 pseudo_consens +54755 chr7 HAVANA gene 28615097 28615888 792.0 - 0 ENSG00000225286.1 processed_pseudogene AC005105.1 1 OTTHUMG00000152816.1 pseudo_consens +54756 chr7 HAVANA gene 28299321 28825894 11674.0 + 0 ENSG00000146592.16 protein_coding CREB5 2 OTTHUMG00000097081.10 +54757 chr7 HAVANA gene 28953358 28958292 4935.0 - 0 ENSG00000255690.2 protein_coding TRIL 2 OTTHUMG00000152829.5 +54758 chr7 HAVANA gene 28957667 28959345 588.0 + 0 ENSG00000228421.2 lincRNA AC005013.1 1 OTTHUMG00000152794.3 +54759 chr7 HAVANA gene 28987028 28988899 578.0 + 0 ENSG00000233517.1 antisense AC005162.2 2 OTTHUMG00000152858.1 overlapping_locus +54760 chr7 HAVANA gene 28979967 29013367 4916.0 + 0 ENSG00000272568.5 antisense AC005162.3 2 OTTHUMG00000186196.1 overlapping_locus +54761 chr7 HAVANA gene 29080284 29082527 389.0 + 0 ENSG00000229452.1 antisense AC005162.1 1 OTTHUMG00000152828.1 +54762 chr7 HAVANA gene 29122274 29128172 1142.0 + 0 ENSG00000285412.1 antisense AC005232.1 2 OTTHUMG00000192440.1 overlapping_locus +54763 chr7 HAVANA gene 29191582 29194109 2528.0 - 0 ENSG00000285081.1 sense_intronic AC004593.2 2 OTTHUMG00000192442.1 +54764 chr7 HAVANA gene 28995231 29195451 3340.0 - 0 ENSG00000106066.14 protein_coding CPVL 1 OTTHUMG00000023669.7 +54765 chr7 HAVANA gene 29199540 29208970 798.0 - 0 ENSG00000235669.1 antisense AC004593.1 2 OTTHUMG00000152748.1 +54766 chr7 HAVANA gene 29212302 29213214 913.0 + 0 ENSG00000237065.2 transcribed_processed_pseudogene NANOGP4 1 OTTHUMG00000152732.2 pseudo_consens,overlapping_locus +54767 chr7 HAVANA gene 29146569 29514328 8801.0 + 0 ENSG00000106069.22 protein_coding CHN2 1 OTTHUMG00000023063.12 overlapping_locus +54768 chr7 HAVANA gene 29122340 29514667 5049.0 + 0 ENSG00000285162.1 protein_coding AC004593.3 2 OTTHUMG00000192441.1 overlapping_locus +54769 chr7 HAVANA gene 29551521 29552151 631.0 + 0 ENSG00000270196.1 processed_pseudogene AC007255.2 1 OTTHUMG00000184479.1 pseudo_consens +54770 chr7 HAVANA gene 29514225 29563670 1440.0 - 0 ENSG00000223813.2 antisense AC007255.1 2 OTTHUMG00000152753.2 +54771 chr7 HAVANA gene 29563811 29567295 1982.0 + 0 ENSG00000176532.3 protein_coding PRR15 2 OTTHUMG00000128555.3 +54772 chr7 HAVANA gene 29625870 29625983 114.0 + 0 ENSG00000223437.1 processed_pseudogene TMSB4XP3 1 OTTHUMG00000152734.1 pseudo_consens +54773 chr7 ENSEMBL gene 29680734 29680828 95.0 - 0 ENSG00000212024.2 miRNA MIR550A3 3 +54774 chr7 HAVANA gene 29598795 29685255 887.0 - 0 ENSG00000225264.3 transcribed_processed_pseudogene ZNRF2P2 2 OTTHUMG00000152750.1 +54775 chr7 HAVANA gene 29650227 29742594 4263.0 + 0 ENSG00000227855.3 transcribed_unprocessed_pseudogene DPY19L2P3 2 OTTHUMG00000152749.3 +54776 chr7 ENSEMBL gene 29912528 29912632 105.0 + 0 ENSG00000238906.1 snoRNA RF01210 3 +54777 chr7 HAVANA gene 29806486 29917066 6065.0 + 0 ENSG00000122574.10 protein_coding WIPF3 1 OTTHUMG00000152761.1 ncRNA_host +54778 chr7 HAVANA gene 29920103 29990289 6046.0 - 0 ENSG00000136193.16 protein_coding SCRN1 2 OTTHUMG00000097093.5 +54779 chr7 HAVANA gene 30010587 30026684 5326.0 - 0 ENSG00000106080.10 protein_coding FKBP14 2 OTTHUMG00000023442.3 +54780 chr7 HAVANA gene 29988600 30027543 2836.0 + 0 ENSG00000227014.6 antisense AC007285.1 2 OTTHUMG00000152760.3 overlapping_locus +54781 chr7 HAVANA gene 30069658 30075115 518.0 - 0 ENSG00000231519.1 antisense AC007285.2 2 OTTHUMG00000152763.1 +54782 chr7 ENSEMBL gene 30115845 30115994 150.0 - 0 ENSG00000283618.1 sRNA RF01699 3 +54783 chr7 HAVANA gene 30027404 30130483 10572.0 + 0 ENSG00000106086.19 protein_coding PLEKHA8 2 OTTHUMG00000097751.6 +54784 chr7 HAVANA gene 30140870 30141417 437.0 + 0 ENSG00000230751.1 sense_intronic AC007036.2 2 OTTHUMG00000152764.1 overlapping_locus +54785 chr7 HAVANA gene 30157531 30159534 614.0 + 0 ENSG00000251660.1 sense_overlapping AC007036.3 2 OTTHUMG00000152759.1 overlapping_locus +54786 chr7 HAVANA gene 30134810 30162762 6532.0 + 0 ENSG00000180354.15 protein_coding MTURN 1 OTTHUMG00000128559.4 overlapping_locus +54787 chr7 HAVANA gene 30167804 30168004 201.0 + 0 ENSG00000225907.1 processed_pseudogene RPS27P16 1 OTTHUMG00000157133.1 pseudo_consens +54788 chr7 HAVANA gene 30176387 30179014 674.0 - 0 ENSG00000227017.1 lincRNA AC007036.1 1 OTTHUMG00000152762.1 +54789 chr7 ENSEMBL gene 30289794 30289890 97.0 - 0 ENSG00000283237.1 miRNA MIR550B1 3 +54790 chr7 ENSEMBL gene 30289794 30289890 97.0 + 0 ENSG00000207771.1 miRNA MIR550A1 3 +54791 chr7 HAVANA gene 30284307 30367692 3696.0 + 0 ENSG00000180233.10 protein_coding ZNRF2 2 OTTHUMG00000097759.3 ncRNA_host,overlapping_locus +54792 chr7 HAVANA gene 30371508 30372741 1234.0 + 0 ENSG00000235859.5 processed_pseudogene AC006978.1 1 OTTHUMG00000152767.1 pseudo_consens,overlapping_locus +54793 chr7 HAVANA gene 30390885 30412375 818.0 + 0 ENSG00000281404.1 lincRNA LINC01176 2 OTTHUMG00000189554.1 overlapping_locus +54794 chr7 HAVANA gene 30362400 30412502 666.0 + 0 ENSG00000281593.1 protein_coding AC006978.2 2 OTTHUMG00000189555.1 overlapping_locus +54795 chr7 HAVANA gene 30424672 30425412 741.0 + 0 ENSG00000272638.1 antisense AC006027.1 2 OTTHUMG00000186204.1 +54796 chr7 HAVANA gene 30424527 30478784 6820.0 - 0 ENSG00000106100.10 protein_coding NOD1 2 OTTHUMG00000023923.4 +54797 chr7 HAVANA gene 30496621 30504844 1597.0 - 0 ENSG00000006625.17 protein_coding GGCT 1 OTTHUMG00000128593.3 overlapping_locus +54798 chr7 HAVANA gene 30523143 30524535 1393.0 - 0 ENSG00000244480.1 transcribed_processed_pseudogene AC005154.2 2 OTTHUMG00000152790.2 overlapping_locus +54799 chr7 HAVANA gene 30525731 30533613 368.0 + 0 ENSG00000264520.1 lincRNA AC005154.4 2 OTTHUMG00000179702.1 +54800 chr7 HAVANA gene 30544053 30544431 379.0 + 0 ENSG00000226874.1 processed_pseudogene AC005154.1 1 OTTHUMG00000152803.2 pseudo_consens +54801 chr7 HAVANA gene 30497077 30550761 687.0 - 0 ENSG00000281039.1 protein_coding AC005154.5 2 OTTHUMG00000189706.1 overlapping_locus +54802 chr7 HAVANA gene 30550217 30551569 427.0 + 0 ENSG00000263683.1 lincRNA AC005154.3 2 OTTHUMG00000179701.1 +54803 chr7 HAVANA gene 30516309 30594809 22965.0 - 0 ENSG00000196295.11 processed_transcript GARS-DT 2 OTTHUMG00000152788.10 overlapping_locus +54804 chr7 HAVANA gene 30594681 30634033 4152.0 + 0 ENSG00000106105.13 protein_coding GARS 2 OTTHUMG00000152769.1 +54805 chr7 HAVANA gene 30651943 30700129 3984.0 - 0 ENSG00000106113.18 protein_coding CRHR2 2 OTTHUMG00000023218.5 +54806 chr7 HAVANA gene 30742431 30742818 388.0 - 0 ENSG00000223419.1 processed_pseudogene AC006022.1 2 OTTHUMG00000152777.1 +54807 chr7 HAVANA gene 30697985 30757602 3376.0 + 0 ENSG00000241644.2 protein_coding INMT 2 OTTHUMG00000167163.2 overlapping_locus +54808 chr7 HAVANA gene 30796691 30803410 547.0 - 0 ENSG00000229263.1 antisense AC004691.1 2 OTTHUMG00000152799.1 +54809 chr7 HAVANA gene 30752137 30892081 2880.0 + 0 ENSG00000254959.6 protein_coding INMT-MINDY4 2 OTTHUMG00000022897.8 overlapping_locus +54810 chr7 HAVANA gene 30771417 30892387 7336.0 + 0 ENSG00000106125.14 protein_coding MINDY4 2 OTTHUMG00000152800.6 overlapping_locus +54811 chr7 HAVANA gene 30852273 30923812 1531.0 + 0 ENSG00000250424.4 protein_coding AC004691.2 2 OTTHUMG00000162387.2 overlapping_locus +54812 chr7 HAVANA gene 30911694 30925516 3435.0 + 0 ENSG00000240583.11 protein_coding AQP1 1 OTTHUMG00000023944.5 overlapping_locus +54813 chr7 HAVANA gene 30938669 30993254 3064.0 + 0 ENSG00000106128.18 protein_coding GHRHR 1 OTTHUMG00000152801.3 +54814 chr7 HAVANA gene 31052461 31111479 6832.0 + 0 ENSG00000078549.14 protein_coding ADCYAP1R1 2 OTTHUMG00000023884.6 +54815 chr7 HAVANA gene 31119284 31119572 289.0 - 0 ENSG00000232887.1 processed_pseudogene AC006466.1 1 OTTHUMG00000152818.1 pseudo_consens +54816 chr7 HAVANA gene 31330711 31330896 186.0 + 0 ENSG00000271027.1 processed_pseudogene AC006380.1 1 OTTHUMG00000184478.1 pseudo_consens +54817 chr7 HAVANA gene 31337461 31340894 2131.0 - 0 ENSG00000164600.6 protein_coding NEUROD6 2 OTTHUMG00000022865.3 +54818 chr7 HAVANA gene 31414645 31421286 575.0 - 0 ENSG00000231418.1 lincRNA AC005090.1 2 OTTHUMG00000152878.1 +54819 chr7 HAVANA gene 31514071 31658720 7246.0 + 0 ENSG00000180347.13 protein_coding ITPRID1 1 OTTHUMG00000128611.5 +54820 chr7 HAVANA gene 31686715 31708455 2384.0 + 0 ENSG00000106341.10 protein_coding PPP1R17 1 OTTHUMG00000128629.2 +54821 chr7 HAVANA gene 31941261 31941583 323.0 + 0 ENSG00000236460.1 processed_pseudogene SNX2P2 1 OTTHUMG00000152897.1 pseudo_consens +54822 chr7 HAVANA gene 31751179 32299329 13821.0 - 0 ENSG00000154678.16 protein_coding PDE1C 1 OTTHUMG00000023836.7 +54823 chr7 HAVANA gene 32427901 32431804 687.0 + 0 ENSG00000284839.1 lincRNA AC018637.1 2 OTTHUMG00000192555.1 +54824 chr7 HAVANA gene 32456963 32457758 796.0 - 0 ENSG00000226468.2 processed_pseudogene AC018641.1 1 OTTHUMG00000152895.1 pseudo_consens +54825 chr7 HAVANA gene 32471513 32472409 897.0 + 0 ENSG00000226421.1 processed_pseudogene SLC25A5P5 1 OTTHUMG00000152896.1 pseudo_consens +54826 chr7 HAVANA gene 32485332 32495283 4701.0 - 0 ENSG00000106355.9 protein_coding LSM5 2 OTTHUMG00000022913.4 +54827 chr7 HAVANA gene 32495426 32588721 14757.0 + 0 ENSG00000105778.18 protein_coding AVL9 1 OTTHUMG00000152929.1 +54828 chr7 ENSEMBL gene 32732981 32733077 97.0 + 0 ENSG00000207573.1 miRNA MIR550A2 3 +54829 chr7 ENSEMBL gene 32732981 32733077 97.0 - 0 ENSG00000283461.1 miRNA MIR550B2 3 +54830 chr7 HAVANA gene 32728569 32753744 982.0 + 0 ENSG00000237004.4 transcribed_processed_pseudogene ZNRF2P1 2 OTTHUMG00000152982.2 +54831 chr7 HAVANA gene 32758882 32759353 472.0 + 0 ENSG00000273014.1 lincRNA AC018645.2 2 OTTHUMG00000186213.3 +54832 chr7 HAVANA gene 32580949 32761787 2594.0 - 0 ENSG00000229358.3 unprocessed_pseudogene DPY19L1P1 2 OTTHUMG00000152928.3 +54833 chr7 HAVANA gene 32760279 32762924 2646.0 + 0 ENSG00000281332.1 lincRNA LINC00997 2 OTTHUMG00000189740.1 +54834 chr7 HAVANA gene 32788334 32788442 109.0 + 0 ENSG00000250756.1 unprocessed_pseudogene AC018645.1 1 OTTHUMG00000161062.1 pseudo_consens +54835 chr7 ENSEMBL gene 32791814 32791946 133.0 + 0 ENSG00000251999.1 snoRNA RF00322 3 +54836 chr7 HAVANA gene 32812757 32838570 915.0 + 0 ENSG00000231952.3 unprocessed_pseudogene DPY19L1P2 2 OTTHUMG00000152927.2 +54837 chr7 HAVANA gene 32845394 32846061 668.0 + 0 ENSG00000272905.1 lincRNA AC018648.1 2 OTTHUMG00000186216.1 +54838 chr7 HAVANA gene 32868172 32894131 4987.0 - 0 ENSG00000170852.10 protein_coding KBTBD2 2 OTTHUMG00000152984.4 +54839 chr7 HAVANA gene 32916815 32943176 1433.0 - 0 ENSG00000205763.13 transcribed_unprocessed_pseudogene RP9P 2 OTTHUMG00000097855.3 +54840 chr7 HAVANA gene 32951426 32951656 231.0 + 0 ENSG00000224573.1 processed_pseudogene AC083863.1 2 OTTHUMG00000152985.1 +54841 chr7 ENSEMBL gene 33001950 33002054 105.0 - 0 ENSG00000252821.1 snRNA RNU6-388P 3 +54842 chr7 HAVANA gene 32957404 33006931 5170.0 + 0 ENSG00000122642.10 protein_coding FKBP9 1 OTTHUMG00000097847.3 +54843 chr7 HAVANA gene 33036212 33036382 171.0 - 0 ENSG00000229054.1 processed_pseudogene RPS29P14 1 OTTHUMG00000152987.1 pseudo_consens +54844 chr7 ENSEMBL gene 33045798 33046090 293.0 - 0 ENSG00000241420.3 misc_RNA RN7SL505P 3 +54845 chr7 HAVANA gene 33014113 33062797 3495.0 - 0 ENSG00000122643.19 protein_coding NT5C3A 2 OTTHUMG00000152983.9 ncRNA_host +54846 chr7 HAVANA gene 33094797 33109401 1898.0 - 0 ENSG00000164610.8 protein_coding RP9 2 OTTHUMG00000152988.2 +54847 chr7 HAVANA gene 33128988 33129143 156.0 - 0 ENSG00000228015.1 processed_pseudogene AC074338.1 2 OTTHUMG00000153034.1 +54848 chr7 ENSEMBL gene 33177740 33177838 99.0 + 0 ENSG00000222741.1 rRNA_pseudogene RNA5SP229 3 +54849 chr7 HAVANA gene 33276834 33277091 258.0 - 0 ENSG00000224946.1 processed_pseudogene AC007312.1 2 OTTHUMG00000153033.1 +54850 chr7 HAVANA gene 33379964 33380886 923.0 + 0 ENSG00000238090.1 processed_pseudogene AC006195.1 1 OTTHUMG00000153035.1 pseudo_consens,overlapping_locus +54851 chr7 HAVANA gene 33129244 33606068 6195.0 + 0 ENSG00000122507.20 protein_coding BBS9 1 OTTHUMG00000128659.5 overlapping_locus +54852 chr7 HAVANA gene 33725981 33728456 1058.0 + 0 ENSG00000173862.3 lincRNA AC008080.1 1 OTTHUMG00000156245.1 +54853 chr7 HAVANA gene 33730292 33732064 577.0 - 0 ENSG00000227481.1 antisense AC008080.2 1 OTTHUMG00000156242.1 +54854 chr7 HAVANA gene 33793168 33803156 2385.0 - 0 ENSG00000236494.1 lincRNA AC008080.4 1 OTTHUMG00000156244.1 +54855 chr7 HAVANA gene 33868501 33874231 380.0 - 0 ENSG00000233219.1 lincRNA AC008080.3 1 OTTHUMG00000156243.1 +54856 chr7 HAVANA gene 33904308 34156356 7919.0 + 0 ENSG00000164619.9 protein_coding BMPER 2 OTTHUMG00000128675.22 +54857 chr7 HAVANA gene 34209526 34256343 510.0 + 0 ENSG00000236212.1 lincRNA AC009262.1 2 OTTHUMG00000153006.1 +54858 chr7 ENSEMBL gene 34297496 34297598 103.0 - 0 ENSG00000202431.1 snRNA RNU6-438P 3 +54859 chr7 HAVANA gene 34710757 34711480 724.0 + 0 ENSG00000235379.1 processed_pseudogene RPL7P31 1 OTTHUMG00000153021.1 pseudo_consens,overlapping_locus +54860 chr7 HAVANA gene 34750253 34752053 1801.0 - 0 ENSG00000230356.1 processed_pseudogene NCAPD2P1 1 OTTHUMG00000153020.1 pseudo_consens,overlapping_locus +54861 chr7 ENSEMBL gene 34753424 34753719 296.0 + 0 ENSG00000242653.3 misc_RNA RN7SL132P 3 +54862 chr7 HAVANA gene 34346512 34871582 7106.0 - 0 ENSG00000197085.11 processed_transcript NPSR1-AS1 2 OTTHUMG00000153007.5 overlapping_locus +54863 chr7 HAVANA gene 34658239 34878332 2674.0 + 0 ENSG00000187258.13 protein_coding NPSR1 1 OTTHUMG00000099383.4 ncRNA_host,overlapping_locus +54864 chr7 ENSEMBL gene 34892417 34892549 133.0 + 0 ENSG00000251802.1 snoRNA RF00322 3 +54865 chr7 ENSEMBL gene 34940760 34940834 75.0 - 0 ENSG00000221669.1 miRNA MIR548N 3 +54866 chr7 HAVANA gene 34928876 35038271 6278.0 - 0 ENSG00000173852.14 protein_coding DPY19L1 2 OTTHUMG00000154888.4 ncRNA_host +54867 chr7 HAVANA gene 35169224 35169535 312.0 + 0 ENSG00000236592.5 processed_pseudogene S100A11P2 1 OTTHUMG00000155025.1 pseudo_consens +54868 chr7 HAVANA gene 35079989 35186041 8272.0 - 0 ENSG00000189212.12 transcribed_unprocessed_pseudogene DPY19L2P1 2 OTTHUMG00000155026.1 +54869 chr7 HAVANA gene 35202430 35254147 1875.0 - 0 ENSG00000164532.10 protein_coding TBX20 2 OTTHUMG00000099411.4 +54870 chr7 HAVANA gene 35258381 35259729 580.0 - 0 ENSG00000226063.1 lincRNA AC009531.1 1 OTTHUMG00000155027.1 +54871 chr7 HAVANA gene 35496021 35510263 562.0 - 0 ENSG00000235464.1 lincRNA AC007652.1 2 OTTHUMG00000155024.1 +54872 chr7 HAVANA gene 35632659 35695571 3246.0 - 0 ENSG00000122557.9 protein_coding HERPUD2 1 OTTHUMG00000128687.10 +54873 chr7 HAVANA gene 35695214 35699413 4200.0 + 0 ENSG00000271122.1 antisense AC018647.2 2 OTTHUMG00000185082.1 +54874 chr7 HAVANA gene 35715034 35734887 2849.0 + 0 ENSG00000227544.8 lincRNA AC018647.1 1 OTTHUMG00000155058.5 +54875 chr7 HAVANA gene 35768122 35768640 519.0 - 0 ENSG00000232736.1 processed_pseudogene AC007551.1 1 OTTHUMG00000155060.1 pseudo_consens,overlapping_locus +54876 chr7 HAVANA gene 35751856 35800616 4051.0 - 0 ENSG00000228878.7 lincRNA SEPT7-AS1 2 OTTHUMG00000155061.3 overlapping_locus +54877 chr7 HAVANA gene 35847038 35847426 389.0 - 0 ENSG00000274328.1 processed_pseudogene AC007551.2 2 OTTHUMG00000187666.1 +54878 chr7 HAVANA gene 35800932 35907105 10906.0 + 0 ENSG00000122545.19 protein_coding SEPT7 2 OTTHUMG00000155063.5 +54879 chr7 ENSEMBL gene 35930158 35930264 107.0 - 0 ENSG00000200446.1 snRNA RNU6-1085P 3 +54880 chr7 HAVANA gene 35933888 35934569 682.0 + 0 ENSG00000273580.1 unprocessed_pseudogene AC087072.2 2 OTTHUMG00000187667.1 +54881 chr7 HAVANA gene 35971147 35971567 421.0 - 0 ENSG00000270889.1 processed_pseudogene AC087072.1 1 OTTHUMG00000184662.1 pseudo_consens +54882 chr7 HAVANA gene 35946294 35972587 621.0 + 0 ENSG00000226102.3 unprocessed_pseudogene SEPT7P3 1 OTTHUMG00000155062.1 pseudo_consens +54883 chr7 HAVANA gene 36029611 36055431 482.0 + 0 ENSG00000232930.1 lincRNA AC083864.2 1 OTTHUMG00000155064.1 +54884 chr7 HAVANA gene 36064715 36066679 974.0 + 0 ENSG00000285573.1 lincRNA AC083864.4 2 OTTHUMG00000193106.1 +54885 chr7 HAVANA gene 36079084 36085736 1497.0 + 0 ENSG00000205745.2 lincRNA AC083864.1 1 OTTHUMG00000155057.2 +54886 chr7 HAVANA gene 36095272 36100653 1893.0 + 0 ENSG00000261184.2 lincRNA AC083864.3 2 OTTHUMG00000173329.2 +54887 chr7 HAVANA gene 36109024 36110872 1849.0 - 0 ENSG00000228815.1 processed_pseudogene MARK2P13 1 OTTHUMG00000155059.1 pseudo_consens +54888 chr7 HAVANA gene 36146842 36148024 1183.0 + 0 ENSG00000271117.1 processed_pseudogene AC078841.1 1 OTTHUMG00000184476.1 pseudo_consens +54889 chr7 HAVANA gene 36228621 36228884 264.0 - 0 ENSG00000228770.1 processed_pseudogene AC007327.1 2 OTTHUMG00000154937.1 +54890 chr7 HAVANA gene 36229280 36231107 457.0 - 0 ENSG00000229679.1 antisense AC007327.2 1 OTTHUMG00000154941.1 +54891 chr7 HAVANA gene 36153149 36301543 4847.0 + 0 ENSG00000122547.10 protein_coding EEPD1 2 OTTHUMG00000154904.1 +54892 chr7 HAVANA gene 36305631 36305904 153.0 + 0 ENSG00000234457.1 processed_pseudogene AC006960.1 2 OTTHUMG00000154942.1 +54893 chr7 HAVANA gene 36319775 36320479 705.0 + 0 ENSG00000260070.1 antisense AC006960.3 2 OTTHUMG00000173154.1 +54894 chr7 ENSEMBL gene 36337667 36337778 112.0 - 0 ENSG00000201432.1 misc_RNA RF00019 3 +54895 chr7 HAVANA gene 36324221 36390125 6728.0 - 0 ENSG00000164542.12 protein_coding KIAA0895 1 OTTHUMG00000154939.3 ncRNA_host +54896 chr7 HAVANA gene 36389806 36453791 6012.0 + 0 ENSG00000011426.10 protein_coding ANLN 1 OTTHUMG00000023143.7 +54897 chr7 HAVANA gene 36463023 36504513 531.0 + 0 ENSG00000237400.1 antisense AC006960.2 2 OTTHUMG00000154940.1 +54898 chr7 HAVANA gene 36597834 36600120 573.0 - 0 ENSG00000230539.1 sense_intronic AOAH-IT1 2 OTTHUMG00000154938.1 overlapping_locus +54899 chr7 HAVANA gene 36512949 36724549 3510.0 - 0 ENSG00000136250.11 protein_coding AOAH 1 OTTHUMG00000023566.7 overlapping_locus +54900 chr7 HAVANA gene 36734004 36734535 532.0 - 0 ENSG00000272984.1 lincRNA AC007349.4 2 OTTHUMG00000186220.1 +54901 chr7 HAVANA gene 36750687 36763081 587.0 + 0 ENSG00000229424.1 lincRNA AC007349.1 1 OTTHUMG00000154946.1 +54902 chr7 HAVANA gene 36781008 36782789 872.0 + 0 ENSG00000235728.1 lincRNA AC007349.3 2 OTTHUMG00000154944.1 +54903 chr7 HAVANA gene 36818959 36819690 732.0 + 0 ENSG00000225739.1 processed_pseudogene NPM1P18 1 OTTHUMG00000154947.1 pseudo_consens +54904 chr7 HAVANA gene 36838972 36841373 553.0 + 0 ENSG00000230831.1 antisense AC007349.2 2 OTTHUMG00000154945.1 +54905 chr7 ENSEMBL gene 36919357 36919432 76.0 - 0 ENSG00000221325.1 miRNA MIR1200 3 +54906 chr7 HAVANA gene 36997796 37013630 528.0 + 0 ENSG00000224101.1 antisense ELMO1-AS1 2 OTTHUMG00000154988.1 +54907 chr7 HAVANA gene 37116779 37117185 407.0 + 0 ENSG00000224706.1 processed_pseudogene RPS17P13 1 OTTHUMG00000154989.1 pseudo_consens +54908 chr7 ENSEMBL gene 37351143 37351242 100.0 + 0 ENSG00000222869.1 snRNA RNU6-565P 3 +54909 chr7 HAVANA gene 37375522 37376023 502.0 + 0 ENSG00000213744.3 processed_pseudogene RPS10P14 1 OTTHUMG00000154987.1 pseudo_consens +54910 chr7 ENSEMBL gene 37419628 37419767 140.0 + 0 ENSG00000200113.1 snoRNA RF00432 3 +54911 chr7 ENSEMBL gene 37435115 37435216 102.0 + 0 ENSG00000201566.1 misc_RNA RF00019 3 +54912 chr7 HAVANA gene 36854361 37449249 9570.0 - 0 ENSG00000155849.15 protein_coding ELMO1 1 OTTHUMG00000023701.8 ncRNA_host +54913 chr7 HAVANA gene 37585500 37586329 830.0 - 0 ENSG00000178503.6 processed_pseudogene NECAP1P1 1 OTTHUMG00000154990.1 pseudo_consens +54914 chr7 HAVANA gene 37796058 37796888 831.0 + 0 ENSG00000283444.1 unitary_pseudogene GPR141BP 2 OTTHUMG00000191699.1 +54915 chr7 HAVANA gene 37821210 37821610 401.0 + 0 ENSG00000225314.1 processed_pseudogene AC018634.1 1 OTTHUMG00000155020.2 pseudo_consens,overlapping_locus +54916 chr7 HAVANA gene 37683796 37833788 2312.0 + 0 ENSG00000187037.8 protein_coding GPR141 2 OTTHUMG00000102105.4 overlapping_locus +54917 chr7 HAVANA gene 37848597 37900401 2439.0 + 0 ENSG00000086288.11 protein_coding NME8 2 OTTHUMG00000023716.5 overlapping_locus +54918 chr7 HAVANA gene 37683843 37951941 2864.0 + 0 ENSG00000086289.11 protein_coding EPDR1 1 OTTHUMG00000102187.4 overlapping_locus +54919 chr7 HAVANA gene 37905932 38025695 3606.0 - 0 ENSG00000106483.11 protein_coding SFRP4 2 OTTHUMG00000023026.7 +54920 chr7 HAVANA gene 38178222 38230671 4348.0 + 0 ENSG00000010270.13 protein_coding STARD3NL 2 OTTHUMG00000023659.11 +54921 chr7 HAVANA gene 38239580 38249572 1013.0 - 0 ENSG00000227191.8 TR_C_gene TRGC2 2 OTTHUMG00000155215.2 +54922 chr7 HAVANA gene 38253380 38253429 50.0 - 0 ENSG00000211687.1 TR_J_gene TRGJ2 2 OTTHUMG00000155217.4 +54923 chr7 HAVANA gene 38256337 38256396 60.0 - 0 ENSG00000211688.1 TR_J_gene TRGJP2 2 OTTHUMG00000155222.4 +54924 chr7 HAVANA gene 38257879 38265678 2730.0 - 0 ENSG00000211689.7 TR_C_gene TRGC1 2 OTTHUMG00000155219.3 +54925 chr7 HAVANA gene 38269491 38269540 50.0 - 0 ENSG00000211690.1 TR_J_gene TRGJ1 2 OTTHUMG00000155214.3 +54926 chr7 HAVANA gene 38273587 38273647 61.0 - 0 ENSG00000211691.2 TR_J_gene TRGJP 2 OTTHUMG00000155220.2 +54927 chr7 HAVANA gene 38276259 38276318 60.0 - 0 ENSG00000211692.1 TR_J_gene TRGJP1 2 OTTHUMG00000155226.3 +54928 chr7 HAVANA gene 38291616 38292078 463.0 - 0 ENSG00000211693.2 TR_V_gene TRGV11 2 OTTHUMG00000155221.3 +54929 chr7 HAVANA gene 38295763 38296233 471.0 - 0 ENSG00000231202.1 TR_V_pseudogene TRGVB 2 OTTHUMG00000155216.2 +54930 chr7 HAVANA gene 38299811 38300322 512.0 - 0 ENSG00000211694.2 TR_V_gene TRGV10 2 OTTHUMG00000155223.6 +54931 chr7 HAVANA gene 38311383 38311808 426.0 + 0 ENSG00000231916.1 processed_pseudogene AC006033.1 1 OTTHUMG00000155225.1 pseudo_consens +54932 chr7 HAVANA gene 38317017 38318861 1735.0 - 0 ENSG00000211695.2 TR_V_gene TRGV9 2 OTTHUMG00000155218.4 +54933 chr7 HAVANA gene 38322446 38322730 285.0 - 0 ENSG00000225992.1 TR_V_pseudogene TRGVA 2 OTTHUMG00000155224.1 +54934 chr7 HAVANA gene 38326070 38329643 1968.0 - 0 ENSG00000272908.1 lincRNA AC006033.2 2 OTTHUMG00000186227.1 +54935 chr7 HAVANA gene 38330343 38330935 468.0 - 0 ENSG00000211696.2 TR_V_gene TRGV8 2 OTTHUMG00000155098.5 +54936 chr7 HAVANA gene 38335041 38335514 353.0 - 0 ENSG00000249978.1 TR_V_pseudogene TRGV7 2 OTTHUMG00000155100.3 +54937 chr7 HAVANA gene 38340700 38340998 299.0 - 0 ENSG00000226212.2 TR_V_pseudogene TRGV6 2 OTTHUMG00000155096.3 +54938 chr7 HAVANA gene 38345030 38345499 354.0 - 0 ENSG00000228668.1 TR_V_pseudogene TRGV5P 2 OTTHUMG00000155095.3 +54939 chr7 HAVANA gene 38349355 38350022 552.0 - 0 ENSG00000211697.4 TR_V_gene TRGV5 2 OTTHUMG00000155101.5 +54940 chr7 HAVANA gene 38353715 38354517 688.0 - 0 ENSG00000211698.2 TR_V_gene TRGV4 2 OTTHUMG00000155099.5 +54941 chr7 HAVANA gene 38358512 38359162 537.0 - 0 ENSG00000211699.2 TR_V_gene TRGV3 2 OTTHUMG00000155102.4 +54942 chr7 HAVANA gene 38362864 38363518 544.0 - 0 ENSG00000233306.2 TR_V_gene TRGV2 2 OTTHUMG00000155105.5 +54943 chr7 HAVANA gene 38367586 38368169 465.0 - 0 ENSG00000211701.2 TR_V_gene TRGV1 2 OTTHUMG00000155097.5 +54944 chr7 HAVANA gene 38341577 38378804 4130.0 + 0 ENSG00000281103.1 antisense TRG-AS1 2 OTTHUMG00000189585.1 +54945 chr7 ENSEMBL gene 38531042 38531338 297.0 - 0 ENSG00000241756.3 misc_RNA RN7SL83P 3 +54946 chr7 HAVANA gene 38383704 38631567 5636.0 - 0 ENSG00000078053.16 protein_coding AMPH 2 OTTHUMG00000023725.5 ncRNA_host +54947 chr7 HAVANA gene 38655205 38656613 1409.0 + 0 ENSG00000227404.1 processed_pseudogene KRT8P20 1 OTTHUMG00000155103.1 pseudo_consens +54948 chr7 HAVANA gene 38685346 38687037 1595.0 - 0 ENSG00000164556.7 processed_pseudogene FAM183BP 1 OTTHUMG00000153653.1 pseudo_consens +54949 chr7 HAVANA gene 38722963 38932394 7801.0 - 0 ENSG00000006715.15 protein_coding VPS41 1 OTTHUMG00000023629.7 +54950 chr7 HAVANA gene 38984243 39013551 514.0 - 0 ENSG00000233854.1 antisense POU6F2-AS2 2 OTTHUMG00000155276.1 +54951 chr7 ENSEMBL gene 39329003 39329134 132.0 - 0 ENSG00000206947.1 snoRNA SNORA20B 3 +54952 chr7 HAVANA gene 39404598 39406346 381.0 - 0 ENSG00000224122.1 antisense POU6F2-AS1 2 OTTHUMG00000155277.1 +54953 chr7 HAVANA gene 38977998 39493095 8231.0 + 0 ENSG00000106536.19 protein_coding POU6F2 1 OTTHUMG00000150803.8 +54954 chr7 HAVANA gene 39545646 39566239 414.0 - 0 ENSG00000227172.2 antisense AC011290.1 2 OTTHUMG00000155274.2 +54955 chr7 HAVANA gene 39569376 39570198 823.0 - 0 ENSG00000236015.1 processed_pseudogene AC011290.2 1 OTTHUMG00000155284.1 pseudo_consens +54956 chr7 HAVANA gene 39609717 39610280 564.0 + 0 ENSG00000106540.4 processed_pseudogene AC004837.1 2 OTTHUMG00000155283.1 overlapping_locus +54957 chr7 HAVANA gene 39609610 39610290 565.0 - 0 ENSG00000231951.1 antisense AC004837.3 2 OTTHUMG00000155272.1 +54958 chr7 HAVANA gene 39566376 39610320 2569.0 + 0 ENSG00000241127.7 protein_coding YAE1 1 OTTHUMG00000128689.3 overlapping_locus +54959 chr7 HAVANA gene 39700341 39703296 731.0 - 0 ENSG00000228554.1 antisense AC004837.2 1 OTTHUMG00000155278.1 +54960 chr7 HAVANA gene 39623483 39708124 3665.0 + 0 ENSG00000006451.7 protein_coding RALA 2 OTTHUMG00000128775.4 +54961 chr7 ENSEMBL gene 39768341 39768444 104.0 + 0 ENSG00000252480.1 snRNA RNU6-719P 3 +54962 chr7 HAVANA gene 39788967 39789304 338.0 - 0 ENSG00000270797.1 processed_pseudogene AC004987.4 1 OTTHUMG00000184664.1 pseudo_consens +54963 chr7 HAVANA gene 39733632 39793092 3115.0 + 0 ENSG00000188185.11 lincRNA LINC00265 2 OTTHUMG00000155273.1 ncRNA_host +54964 chr7 HAVANA gene 39796593 39797911 1319.0 - 0 ENSG00000226220.1 processed_pseudogene CICP22 1 OTTHUMG00000155281.1 pseudo_consens +54965 chr7 HAVANA gene 39833286 39833793 508.0 - 0 ENSG00000231198.1 processed_pseudogene AC004987.1 2 OTTHUMG00000155319.1 +54966 chr7 HAVANA gene 39833571 39834718 1148.0 + 0 ENSG00000233225.3 processed_pseudogene AC004987.2 1 OTTHUMG00000155275.1 pseudo_consens,overlapping_locus +54967 chr7 HAVANA gene 39854494 39855056 563.0 - 0 ENSG00000175741.5 processed_pseudogene RWDD4P2 1 OTTHUMG00000155282.1 pseudo_consens +54968 chr7 HAVANA gene 39816549 39868140 771.0 + 0 ENSG00000237251.2 unprocessed_pseudogene AC004987.3 1 OTTHUMG00000155279.1 pseudo_consens,overlapping_locus +54969 chr7 ENSEMBL gene 39888375 39888664 290.0 + 0 ENSG00000242855.3 misc_RNA RN7SL496P 3 +54970 chr7 HAVANA gene 39947522 39949755 2234.0 - 0 ENSG00000259826.1 antisense AC072061.1 2 OTTHUMG00000173374.1 +54971 chr7 HAVANA gene 39949646 40099580 25093.0 + 0 ENSG00000065883.15 protein_coding CDK13 2 OTTHUMG00000023726.7 +54972 chr7 HAVANA gene 40107288 40107454 167.0 + 0 ENSG00000273444.1 unprocessed_pseudogene AC006023.2 2 OTTHUMG00000186237.1 +54973 chr7 HAVANA gene 40115685 40115943 259.0 + 0 ENSG00000270577.1 processed_pseudogene AC006023.1 1 OTTHUMG00000184474.1 pseudo_consens +54974 chr7 ENSEMBL gene 40128121 40128232 112.0 - 0 ENSG00000199273.1 misc_RNA RF00019 3 +54975 chr7 HAVANA gene 40126023 40134652 7661.0 - 0 ENSG00000168303.7 protein_coding MPLKIP 2 OTTHUMG00000128797.4 ncRNA_host +54976 chr7 HAVANA gene 40151613 40154151 1480.0 + 0 ENSG00000248711.1 unprocessed_pseudogene THUMPD3P1 1 OTTHUMG00000155106.1 pseudo_consens,overlapping_locus +54977 chr7 HAVANA gene 40538127 40546928 1771.0 - 0 ENSG00000203446.2 antisense AC004988.1 2 OTTHUMG00000155092.1 +54978 chr7 HAVANA gene 40775558 40785217 381.0 + 0 ENSG00000227658.1 sense_intronic AC005160.1 2 OTTHUMG00000155093.1 overlapping_locus +54979 chr7 HAVANA gene 40134977 40860763 2857.0 + 0 ENSG00000175600.15 protein_coding SUGCT 1 OTTHUMG00000155094.6 overlapping_locus +54980 chr7 HAVANA gene 40964667 40979939 3263.0 - 0 ENSG00000232458.1 lincRNA LINC01450 2 OTTHUMG00000155113.1 +54981 chr7 HAVANA gene 41101604 41133507 1220.0 + 0 ENSG00000224017.1 lincRNA LINC01449 2 OTTHUMG00000155115.1 +54982 chr7 HAVANA gene 41667168 41705834 8302.0 - 0 ENSG00000122641.10 protein_coding INHBA 2 OTTHUMG00000023574.4 overlapping_locus +54983 chr7 HAVANA gene 41693916 41779388 5417.0 + 0 ENSG00000224116.6 antisense INHBA-AS1 2 OTTHUMG00000155114.2 +54984 chr7 HAVANA gene 42113365 42113620 256.0 + 0 ENSG00000213721.3 processed_pseudogene HMGN2P30 2 OTTHUMG00000155127.1 +54985 chr7 HAVANA gene 41960950 42237870 9239.0 - 0 ENSG00000106571.13 protein_coding GLI3 2 OTTHUMG00000023630.7 +54986 chr7 HAVANA gene 42661726 42706447 1171.0 - 0 ENSG00000238284.1 lincRNA LINC01448 2 OTTHUMG00000155126.1 +54987 chr7 HAVANA gene 42794906 42802494 1610.0 + 0 ENSG00000229161.2 unprocessed_pseudogene TCP1P1 1 OTTHUMG00000155181.1 pseudo_consens +54988 chr7 HAVANA gene 42829672 42844438 561.0 - 0 ENSG00000231539.1 lincRNA AC010132.1 2 OTTHUMG00000155178.1 +54989 chr7 HAVANA gene 42901272 42902639 1368.0 - 0 ENSG00000261019.1 lincRNA AC010132.4 2 OTTHUMG00000172765.1 +54990 chr7 HAVANA gene 42908726 42912305 3248.0 - 0 ENSG00000136197.12 protein_coding C7orf25 2 OTTHUMG00000128869.5 overlapping_locus +54991 chr7 HAVANA gene 42918741 42920084 1043.0 + 0 ENSG00000234983.1 processed_pseudogene AC010132.2 2 OTTHUMG00000155179.1 +54992 chr7 HAVANA gene 42909273 42932174 3068.0 - 0 ENSG00000256646.7 protein_coding AC010132.3 2 OTTHUMG00000168259.1 overlapping_locus +54993 chr7 HAVANA gene 42916857 42932223 5336.0 - 0 ENSG00000106588.10 protein_coding PSMA2 2 OTTHUMG00000023916.4 overlapping_locus +54994 chr7 HAVANA gene 42932200 42948958 3534.0 + 0 ENSG00000106591.3 protein_coding MRPL32 2 OTTHUMG00000155180.1 +54995 chr7 ENSEMBL gene 43096732 43096844 113.0 + 0 ENSG00000201933.1 misc_RNA RF00019 3 +54996 chr7 HAVANA gene 42954135 43113931 4520.0 - 0 ENSG00000232006.8 lincRNA AC005537.1 1 OTTHUMG00000155182.6 +54997 chr7 ENSEMBL gene 43150895 43150994 100.0 + 0 ENSG00000264069.3 miRNA MIR3943 3 +54998 chr7 HAVANA gene 43117896 43163187 1839.0 + 0 ENSG00000181211.1 sense_intronic HECW1-IT1 2 OTTHUMG00000155204.1 ncRNA_host,overlapping_locus +54999 chr7 ENSEMBL gene 43194421 43194482 62.0 + 0 ENSG00000252983.1 snRNA RNU7-35P 3 +55000 chr7 ENSEMBL gene 43207762 43207866 105.0 - 0 ENSG00000223258.1 snRNA RNU6-575P 3 +55001 chr7 HAVANA gene 43239066 43249268 1205.0 - 0 ENSG00000228680.1 antisense AC004692.2 1 OTTHUMG00000155205.1 +55002 chr7 HAVANA gene 43274159 43274582 424.0 + 0 ENSG00000213717.3 processed_pseudogene AC004692.1 1 OTTHUMG00000155207.2 pseudo_consens,overlapping_locus +55003 chr7 HAVANA gene 43508728 43522542 2916.0 - 0 ENSG00000231638.1 antisense LUARIS 2 OTTHUMG00000155206.1 +55004 chr7 HAVANA gene 43112599 43566001 13965.0 + 0 ENSG00000002746.14 protein_coding HECW1 1 OTTHUMG00000128917.5 ncRNA_host,overlapping_locus +55005 chr7 HAVANA gene 43582758 43650713 5099.0 + 0 ENSG00000164543.6 protein_coding STK17A 2 OTTHUMG00000022825.5 +55006 chr7 HAVANA gene 43608456 43729717 11820.0 - 0 ENSG00000106603.18 protein_coding COA1 2 OTTHUMG00000128949.10 +55007 chr7 HAVANA gene 43767290 43767599 310.0 + 0 ENSG00000229497.1 processed_pseudogene AC005189.1 1 OTTHUMG00000155246.2 pseudo_consens,overlapping_locus +55008 chr7 HAVANA gene 43758680 43807342 1821.0 + 0 ENSG00000106605.10 protein_coding BLVRA 2 OTTHUMG00000128953.5 overlapping_locus +55009 chr7 HAVANA gene 43866558 43869893 2613.0 - 0 ENSG00000062582.13 protein_coding MRPS24 2 OTTHUMG00000023175.4 overlapping_locus +55010 chr7 HAVANA gene 43866558 43906589 795.0 - 0 ENSG00000270617.1 protein_coding URGCP-MRPS24 2 OTTHUMG00000185136.1 overlapping_locus +55011 chr7 HAVANA gene 43918697 43920054 1358.0 + 0 ENSG00000237972.1 processed_pseudogene TUBG1P 1 OTTHUMG00000155247.1 pseudo_consens +55012 chr7 HAVANA gene 43875894 43926411 7830.0 - 0 ENSG00000106608.16 protein_coding URGCP 2 OTTHUMG00000155245.3 overlapping_locus +55013 chr7 HAVANA gene 43926438 43956136 4713.0 + 0 ENSG00000078967.12 protein_coding UBE2D4 2 OTTHUMG00000128971.6 +55014 chr7 HAVANA gene 43961590 43973323 1148.0 - 0 ENSG00000241057.2 transcribed_unprocessed_pseudogene AC004951.3 2 OTTHUMG00000155270.2 overlapping_locus +55015 chr7 HAVANA gene 43984995 43990207 793.0 - 0 ENSG00000239556.4 transcribed_unprocessed_pseudogene AC004951.2 2 OTTHUMG00000155269.4 overlapping_locus +55016 chr7 HAVANA gene 44004046 44007866 1866.0 - 0 ENSG00000228434.1 lincRNA AC004951.1 2 OTTHUMG00000155268.1 overlapping_locus +55017 chr7 HAVANA gene 44000889 44010122 2649.0 + 0 ENSG00000136206.3 protein_coding SPDYE1 2 OTTHUMG00000128985.1 +55018 chr7 HAVANA gene 43951910 44019151 2076.0 - 0 ENSG00000273432.1 processed_transcript AC004951.4 2 OTTHUMG00000186450.1 overlapping_locus +55019 chr7 HAVANA gene 44013562 44019170 1422.0 - 0 ENSG00000272655.2 transcribed_unprocessed_pseudogene POLR2J4 2 OTTHUMG00000155253.4 overlapping_locus +55020 chr7 HAVANA gene 43940895 44019175 6492.0 - 0 ENSG00000214783.9 processed_transcript POLR2J4 2 OTTHUMG00000186388.2 overlapping_locus +55021 chr7 HAVANA gene 44011882 44038978 2698.0 - 0 ENSG00000285596.1 processed_transcript AC017116.2 2 OTTHUMG00000193350.1 overlapping_locus +55022 chr7 HAVANA gene 44026951 44041892 4056.0 - 0 ENSG00000228903.7 transcribed_unprocessed_pseudogene RASA4CP 2 OTTHUMG00000155354.3 overlapping_locus +55023 chr7 HAVANA gene 44039171 44042306 2703.0 + 0 ENSG00000235314.1 lincRNA LINC00957 2 OTTHUMG00000155351.1 +55024 chr7 ENSEMBL gene 44051766 44051829 64.0 + 0 ENSG00000284067.1 miRNA MIR6837 3 +55025 chr7 HAVANA gene 44062727 44065587 857.0 - 0 ENSG00000164708.5 protein_coding PGAM2 2 OTTHUMG00000155355.1 +55026 chr7 HAVANA gene 44064908 44066079 708.0 + 0 ENSG00000239775.1 sense_overlapping AC017116.1 1 OTTHUMG00000155352.1 overlapping_locus +55027 chr7 HAVANA gene 44044640 44069456 12587.0 + 0 ENSG00000136279.20 protein_coding DBNL 1 OTTHUMG00000155350.5 ncRNA_host,overlapping_locus +55028 chr7 ENSEMBL gene 44073378 44073433 56.0 - 0 ENSG00000283969.1 miRNA MIR6838 3 +55029 chr7 HAVANA gene 44072247 44082540 4487.0 - 0 ENSG00000122678.16 protein_coding POLM 1 OTTHUMG00000155353.2 ncRNA_host +55030 chr7 ENSEMBL gene 44110849 44110912 64.0 + 0 ENSG00000284412.1 miRNA MIR4649 3 +55031 chr7 HAVANA gene 44104361 44114562 4955.0 + 0 ENSG00000106624.10 protein_coding AEBP1 1 OTTHUMG00000023362.20 ncRNA_host +55032 chr7 HAVANA gene 44114681 44124358 3695.0 - 0 ENSG00000106628.10 protein_coding POLD2 1 OTTHUMG00000022909.15 +55033 chr7 ENSEMBL gene 44125752 44125873 122.0 - 0 ENSG00000252848.1 rRNA_pseudogene RNA5SP230 3 +55034 chr7 HAVANA gene 44138864 44141332 1458.0 - 0 ENSG00000106631.8 protein_coding MYL7 1 OTTHUMG00000023125.7 +55035 chr7 HAVANA gene 44144271 44198170 4122.0 - 0 ENSG00000106633.15 protein_coding GCK 2 OTTHUMG00000022903.4 +55036 chr7 HAVANA gene 44200968 44214294 3707.0 + 0 ENSG00000106636.7 protein_coding YKT6 1 OTTHUMG00000129089.3 +55037 chr7 HAVANA gene 44217150 44334577 8159.0 - 0 ENSG00000058404.19 protein_coding CAMK2B 1 OTTHUMG00000023491.13 +55038 chr7 HAVANA gene 44367140 44369292 2153.0 - 0 ENSG00000279853.1 TEC AC004453.2 2 OTTHUMG00000173300.1 +55039 chr7 HAVANA gene 44467897 44468304 408.0 + 0 ENSG00000146677.7 processed_pseudogene AC004453.1 2 OTTHUMG00000155305.2 +55040 chr7 HAVANA gene 44379121 44490880 10113.0 - 0 ENSG00000015676.17 protein_coding NUDCD3 1 OTTHUMG00000129174.4 +55041 chr7 ENSEMBL gene 44503773 44503879 107.0 - 0 ENSG00000200456.1 snRNA RNU6-1097P 3 +55042 chr7 HAVANA gene 44511025 44511332 308.0 - 0 ENSG00000225443.1 processed_pseudogene AC004938.1 1 OTTHUMG00000155306.1 pseudo_consens +55043 chr7 HAVANA gene 44512535 44541315 5252.0 - 0 ENSG00000015520.14 protein_coding NPC1L1 1 OTTHUMG00000023691.3 +55044 chr7 HAVANA gene 44565417 44575051 4068.0 - 0 ENSG00000136271.10 protein_coding DDX56 1 OTTHUMG00000129211.3 +55045 chr7 HAVANA gene 44577894 44582287 3769.0 - 0 ENSG00000158604.14 protein_coding TMED4 1 OTTHUMG00000129210.2 +55046 chr7 HAVANA gene 44601032 44601487 456.0 + 0 ENSG00000271586.1 processed_pseudogene AC011894.1 1 OTTHUMG00000184473.1 pseudo_consens +55047 chr7 HAVANA gene 44606572 44709066 5210.0 + 0 ENSG00000105953.14 protein_coding OGDH 1 OTTHUMG00000155304.2 +55048 chr7 HAVANA gene 44748581 44769881 7339.0 + 0 ENSG00000122515.14 protein_coding ZMIZ2 2 OTTHUMG00000155817.3 +55049 chr7 HAVANA gene 44785050 44787340 422.0 - 0 ENSG00000228596.1 antisense AC013436.1 1 OTTHUMG00000155816.1 +55050 chr7 HAVANA gene 44796680 44824564 4432.0 + 0 ENSG00000196262.13 protein_coding PPIA 2 OTTHUMG00000023687.5 +55051 chr7 HAVANA gene 44826791 44848083 4749.0 - 0 ENSG00000105968.18 protein_coding H2AFV 2 OTTHUMG00000129217.4 +55052 chr7 HAVANA gene 44848416 44849568 362.0 + 0 ENSG00000234183.1 antisense LINC01952 2 OTTHUMG00000155819.1 +55053 chr7 ENSEMBL gene 44881748 44881800 53.0 - 0 ENSG00000284261.1 miRNA MIR4657 3 +55054 chr7 HAVANA gene 44876293 44885361 9069.0 - 0 ENSG00000146676.8 protein_coding PURB 2 OTTHUMG00000023578.4 ncRNA_host +55055 chr7 HAVANA gene 44884953 44886393 1441.0 + 0 ENSG00000272768.1 antisense AC004854.2 2 OTTHUMG00000186249.1 +55056 chr7 HAVANA gene 44919669 44920329 349.0 + 0 ENSG00000230160.1 processed_pseudogene AC004854.1 1 OTTHUMG00000155822.1 pseudo_consens +55057 chr7 HAVANA gene 44958999 44960909 1911.0 - 0 ENSG00000260997.1 sense_overlapping AC004847.1 2 OTTHUMG00000173373.1 +55058 chr7 HAVANA gene 44962662 44979098 8653.0 - 0 ENSG00000136286.15 protein_coding MYO1G 2 OTTHUMG00000155821.4 +55059 chr7 ENSEMBL gene 44985378 44985510 133.0 - 0 ENSG00000277184.1 snoRNA SNORA9 3 +55060 chr7 HAVANA gene 44983023 44986961 3647.0 - 0 ENSG00000232956.8 lincRNA SNHG15 2 OTTHUMG00000179544.2 ncRNA_host +55061 chr7 HAVANA gene 44999475 45076469 8196.0 + 0 ENSG00000136280.16 protein_coding CCM2 1 OTTHUMG00000129246.5 +55062 chr7 HAVANA gene 45080438 45088914 4917.0 - 0 ENSG00000136274.8 protein_coding NACAD 2 OTTHUMG00000159170.2 +55063 chr7 ENSEMBL gene 45104349 45104482 134.0 - 0 ENSG00000206838.1 snoRNA SNORA5A 3 +55064 chr7 ENSEMBL gene 45104906 45105042 137.0 - 0 ENSG00000201772.1 snoRNA SNORA5C 3 +55065 chr7 ENSEMBL gene 45105968 45106099 132.0 - 0 ENSG00000200656.1 snoRNA SNORA5B 3 +55066 chr7 HAVANA gene 45100100 45112047 5803.0 - 0 ENSG00000136270.13 protein_coding TBRG4 1 OTTHUMG00000129247.7 ncRNA_host +55067 chr7 HAVANA gene 45157791 45186302 1427.0 + 0 ENSG00000122679.8 protein_coding RAMP3 1 OTTHUMG00000023729.3 +55068 chr7 HAVANA gene 45303620 45304362 637.0 + 0 ENSG00000275295.1 processed_pseudogene AC073968.1 2 OTTHUMG00000187668.2 +55069 chr7 HAVANA gene 45391626 45392205 580.0 - 0 ENSG00000234359.3 processed_pseudogene ELK1P1 1 OTTHUMG00000159177.1 pseudo_consens +55070 chr7 HAVANA gene 45534523 45534681 159.0 - 0 ENSG00000226999.1 processed_pseudogene AC073325.2 2 OTTHUMG00000155421.2 +55071 chr7 HAVANA gene 45460712 45542182 542.0 + 0 ENSG00000225537.1 lincRNA AC073325.1 2 OTTHUMG00000155418.1 +55072 chr7 HAVANA gene 45574140 45723116 13530.0 + 0 ENSG00000164742.15 protein_coding ADCY1 1 OTTHUMG00000155420.3 +55073 chr7 HAVANA gene 45723780 45768985 4496.0 - 0 ENSG00000214765.8 transcribed_unprocessed_pseudogene SEPT7P2 2 OTTHUMG00000155423.1 +55074 chr7 ENSEMBL gene 45789585 45789688 104.0 + 0 ENSG00000212450.1 snRNA RNU6-241P 3 +55075 chr7 HAVANA gene 45769105 45815263 10334.0 + 0 ENSG00000272556.2 transcribed_unprocessed_pseudogene GTF2IP13 2 OTTHUMG00000155422.2 +55076 chr7 HAVANA gene 45816216 45819016 2801.0 - 0 ENSG00000235955.1 processed_pseudogene CICP20 1 OTTHUMG00000155427.1 pseudo_consens +55077 chr7 HAVANA gene 45818582 45819097 516.0 + 0 ENSG00000251378.1 unprocessed_pseudogene AC096582.2 2 OTTHUMG00000155417.1 overlapping_locus +55078 chr7 HAVANA gene 45816557 45821064 349.0 + 0 ENSG00000226838.1 unprocessed_pseudogene AC096582.1 2 OTTHUMG00000155425.1 overlapping_locus +55079 chr7 ENSEMBL gene 45843634 45843740 107.0 + 0 ENSG00000202350.1 snRNA RNU6-326P 3 +55080 chr7 HAVANA gene 45859994 45873082 3730.0 - 0 ENSG00000283247.2 protein_coding AC096582.3 2 OTTHUMG00000191722.2 +55081 chr7 HAVANA gene 45888357 45893668 1653.0 + 0 ENSG00000146678.9 protein_coding IGFBP1 1 OTTHUMG00000152343.3 +55082 chr7 HAVANA gene 45912245 45921874 4571.0 - 0 ENSG00000146674.14 protein_coding IGFBP3 1 OTTHUMG00000023769.9 +55083 chr7 HAVANA gene 45969657 45980191 555.0 + 0 ENSG00000237471.1 lincRNA AC073115.2 1 OTTHUMG00000155426.1 +55084 chr7 HAVANA gene 45997540 45998071 532.0 - 0 ENSG00000233952.1 processed_pseudogene FTLP15 1 OTTHUMG00000154754.1 pseudo_consens +55085 chr7 HAVANA gene 45999621 46000778 1158.0 - 0 ENSG00000221971.3 processed_pseudogene TTC4P1 1 OTTHUMG00000154753.1 pseudo_consens +55086 chr7 HAVANA gene 45990905 46000898 532.0 + 0 ENSG00000229628.1 lincRNA AC073115.1 1 OTTHUMG00000155428.1 +55087 chr7 HAVANA gene 46144937 46145688 752.0 + 0 ENSG00000224547.1 processed_pseudogene ZNF619P1 2 OTTHUMG00000155473.1 +55088 chr7 HAVANA gene 46261064 46294469 524.0 + 0 ENSG00000229459.1 lincRNA AC023669.1 2 OTTHUMG00000155424.1 +55089 chr7 HAVANA gene 46302120 46343621 239.0 + 0 ENSG00000237760.1 lincRNA AC023669.2 2 OTTHUMG00000155471.1 +55090 chr7 HAVANA gene 46476457 46477940 229.0 - 0 ENSG00000240355.1 lincRNA AC004869.2 2 OTTHUMG00000155472.1 overlapping_locus +55091 chr7 HAVANA gene 46477822 46481578 540.0 - 0 ENSG00000230680.2 lincRNA AC004869.1 1 OTTHUMG00000155475.1 overlapping_locus +55092 chr7 HAVANA gene 46634614 46634946 333.0 + 0 ENSG00000224519.1 processed_pseudogene HMGN1P19 1 OTTHUMG00000155468.1 pseudo_consens +55093 chr7 HAVANA gene 46673785 46759851 2791.0 - 0 ENSG00000233539.5 lincRNA AC011294.1 2 OTTHUMG00000155474.1 +55094 chr7 HAVANA gene 46781373 46783443 2071.0 + 0 ENSG00000242948.1 transcribed_processed_pseudogene EPS15P1 2 OTTHUMG00000155470.1 +55095 chr7 HAVANA gene 47026128 47026570 443.0 - 0 ENSG00000242552.1 processed_pseudogene MRPL42P4 1 OTTHUMG00000155552.1 pseudo_consens,overlapping_locus +55096 chr7 HAVANA gene 46969702 47027481 1537.0 + 0 ENSG00000223829.5 processed_transcript AC004870.2 2 OTTHUMG00000155553.1 +55097 chr7 HAVANA gene 46890625 47049678 661.0 - 0 ENSG00000232072.1 lincRNA AC004870.4 1 OTTHUMG00000155476.2 overlapping_locus +55098 chr7 HAVANA gene 47052793 47053674 882.0 + 0 ENSG00000214754.3 processed_pseudogene AC004870.1 1 OTTHUMG00000155551.1 pseudo_consens +55099 chr7 HAVANA gene 47000620 47079128 530.0 - 0 ENSG00000229192.6 lincRNA AC004870.3 2 OTTHUMG00000155549.1 overlapping_locus +55100 chr7 HAVANA gene 47275154 47582558 11797.0 - 0 ENSG00000136205.16 protein_coding TNS3 1 OTTHUMG00000074075.3 +55101 chr7 HAVANA gene 47621939 47629893 2761.0 + 0 ENSG00000236078.1 lincRNA LINC01447 2 OTTHUMG00000155554.1 +55102 chr7 HAVANA gene 47655244 47661648 2911.0 + 0 ENSG00000221845.4 lincRNA C7orf65 2 OTTHUMG00000155550.1 +55103 chr7 HAVANA gene 47761476 47766772 1188.0 + 0 ENSG00000146666.5 antisense LINC00525 2 OTTHUMG00000155644.1 +55104 chr7 HAVANA gene 47795291 47819847 808.0 + 0 ENSG00000136275.10 antisense C7orf69 2 OTTHUMG00000155648.3 +55105 chr7 HAVANA gene 47740202 47948491 10250.0 - 0 ENSG00000158683.8 protein_coding PKD1L1 2 OTTHUMG00000155649.2 overlapping_locus +55106 chr7 HAVANA gene 47956793 47957318 526.0 + 0 ENSG00000225507.1 processed_pseudogene AC069282.1 1 OTTHUMG00000155643.1 pseudo_consens +55107 chr7 HAVANA gene 47963288 47979553 4103.0 - 0 ENSG00000136273.12 protein_coding HUS1 2 OTTHUMG00000155645.4 overlapping_locus +55108 chr7 HAVANA gene 47987148 48029119 1732.0 - 0 ENSG00000164744.12 protein_coding SUN3 2 OTTHUMG00000155646.2 +55109 chr7 HAVANA gene 48035511 48061304 2275.0 + 0 ENSG00000164746.13 protein_coding C7orf57 1 OTTHUMG00000155808.1 +55110 chr7 HAVANA gene 48088628 48108733 4577.0 + 0 ENSG00000183696.13 protein_coding UPP1 2 OTTHUMG00000129253.3 +55111 chr7 HAVANA gene 48171458 48647496 19074.0 + 0 ENSG00000179869.14 protein_coding ABCA13 1 OTTHUMG00000155840.6 +55112 chr7 HAVANA gene 48660575 48663305 373.0 - 0 ENSG00000228173.1 lincRNA AC091770.1 2 OTTHUMG00000155841.1 +55113 chr7 HAVANA gene 48708327 48711582 923.0 + 0 ENSG00000285536.1 lincRNA AC091770.2 2 OTTHUMG00000193057.1 +55114 chr7 HAVANA gene 48847766 48851625 3860.0 + 0 ENSG00000279578.1 TEC AC004899.2 2 OTTHUMG00000187142.1 +55115 chr7 HAVANA gene 48846426 48852898 1714.0 - 0 ENSG00000225705.2 processed_pseudogene AC004899.1 1 OTTHUMG00000155843.1 pseudo_consens +55116 chr7 HAVANA gene 48902556 48903891 1336.0 - 0 ENSG00000229165.1 processed_pseudogene GDI2P1 1 OTTHUMG00000155842.1 pseudo_consens +55117 chr7 HAVANA gene 48919765 48927454 3115.0 + 0 ENSG00000218305.4 protein_coding CDC14C 2 OTTHUMG00000155844.2 retrogene +55118 chr7 HAVANA gene 49230137 49254816 692.0 + 0 ENSG00000234686.1 lincRNA AC091730.1 2 OTTHUMG00000155853.1 +55119 chr7 HAVANA gene 49258493 49259846 1354.0 - 0 ENSG00000270763.1 processed_pseudogene DDX43P2 1 OTTHUMG00000184669.1 pseudo_consens +55120 chr7 HAVANA gene 49760897 49762764 1868.0 - 0 ENSG00000279104.1 TEC AC093775.1 2 OTTHUMG00000173181.1 +55121 chr7 HAVANA gene 49773661 49921950 11299.0 + 0 ENSG00000188730.4 protein_coding VWC2 2 OTTHUMG00000129265.2 +55122 chr7 HAVANA gene 49942251 49944440 2190.0 - 0 ENSG00000223893.1 processed_pseudogene GNL2P1 1 OTTHUMG00000155879.1 pseudo_consens,overlapping_locus +55123 chr7 HAVANA gene 49850421 50121329 2643.0 - 0 ENSG00000042813.7 protein_coding ZPBP 1 OTTHUMG00000023528.4 overlapping_locus +55124 chr7 HAVANA gene 50141540 50142823 767.0 - 0 ENSG00000228005.1 antisense AC020743.1 2 OTTHUMG00000155880.1 +55125 chr7 HAVANA gene 50096036 50159830 2028.0 + 0 ENSG00000164500.6 protein_coding SPATA48 2 OTTHUMG00000155883.1 +55126 chr7 HAVANA gene 50202001 50262994 1426.0 - 0 ENSG00000231681.2 lincRNA AC020743.2 2 OTTHUMG00000155882.2 +55127 chr7 HAVANA gene 50274790 50275622 360.0 - 0 ENSG00000235620.1 lincRNA AC020743.3 1 OTTHUMG00000155881.1 +55128 chr7 HAVANA gene 50388489 50400097 380.0 - 0 ENSG00000285165.1 antisense AC124014.1 2 OTTHUMG00000192465.1 +55129 chr7 HAVANA gene 50304068 50405101 10930.0 + 0 ENSG00000185811.18 protein_coding IKZF1 2 OTTHUMG00000155907.6 +55130 chr7 ENSEMBL gene 50435380 50435486 107.0 + 0 ENSG00000200815.1 snRNA RNU6-1091P 3 +55131 chr7 HAVANA gene 50444128 50542535 5034.0 - 0 ENSG00000132436.11 protein_coding FIGNL1 2 OTTHUMG00000022866.5 +55132 chr7 HAVANA gene 50531759 50543463 1776.0 + 0 ENSG00000226122.1 antisense DDC-AS1 2 OTTHUMG00000155976.1 +55133 chr7 HAVANA gene 50458436 50565457 3136.0 - 0 ENSG00000132437.17 protein_coding DDC 1 OTTHUMG00000023353.6 +55134 chr7 HAVANA gene 50590063 50793462 9944.0 - 0 ENSG00000106070.18 protein_coding GRB10 2 OTTHUMG00000150622.20 +55135 chr7 HAVANA gene 50839363 50841992 482.0 - 0 ENSG00000236046.1 lincRNA AC004920.1 1 OTTHUMG00000155977.1 +55136 chr7 HAVANA gene 50843578 50843732 155.0 - 0 ENSG00000228085.1 processed_pseudogene AC009296.1 1 OTTHUMG00000155975.1 pseudo_consens +55137 chr7 ENSEMBL gene 50935350 50935493 144.0 - 0 ENSG00000201133.1 snoRNA RF00394 3 +55138 chr7 HAVANA gene 50866747 51022990 911.0 + 0 ENSG00000228204.2 antisense AC004830.1 2 OTTHUMG00000155997.3 +55139 chr7 HAVANA gene 51259429 51260167 739.0 - 0 ENSG00000231490.1 processed_pseudogene RPL7L1P2 1 OTTHUMG00000156002.1 pseudo_consens,overlapping_locus +55140 chr7 HAVANA gene 51016212 51316818 14349.0 - 0 ENSG00000106078.18 protein_coding COBL 2 OTTHUMG00000155999.6 overlapping_locus +55141 chr7 HAVANA gene 51382284 51384660 2377.0 + 0 ENSG00000227233.1 processed_pseudogene CICP17 1 OTTHUMG00000156000.1 pseudo_consens +55142 chr7 HAVANA gene 51386363 51387101 739.0 - 0 ENSG00000228897.1 processed_pseudogene AC012441.2 2 OTTHUMG00000155996.1 +55143 chr7 HAVANA gene 51388430 51389114 685.0 - 0 ENSG00000227080.2 processed_pseudogene AC012441.1 2 OTTHUMG00000156003.1 +55144 chr7 HAVANA gene 51600286 51600573 288.0 - 0 ENSG00000229478.1 processed_pseudogene ROBO2P1 2 OTTHUMG00000156001.1 +55145 chr7 HAVANA gene 51614251 51630870 588.0 + 0 ENSG00000229403.1 lincRNA AC005999.1 2 OTTHUMG00000155998.1 overlapping_locus +55146 chr7 ENSEMBL gene 51716657 51716922 266.0 + 0 ENSG00000242650.3 misc_RNA RN7SL292P 3 +55147 chr7 HAVANA gene 51471717 51729716 1564.0 + 0 ENSG00000285741.1 lincRNA AC005999.2 2 OTTHUMG00000192812.1 ncRNA_host,overlapping_locus +55148 chr7 HAVANA gene 52165235 52192913 738.0 - 0 ENSG00000233960.1 lincRNA AC079763.1 2 OTTHUMG00000156033.1 +55149 chr7 ENSEMBL gene 52269437 52269569 133.0 - 0 ENSG00000253028.1 snoRNA RF00322 3 +55150 chr7 HAVANA gene 52891837 52897807 1589.0 - 0 ENSG00000234304.2 processed_pseudogene SGO1P2 1 OTTHUMG00000155992.2 pseudo_consens +55151 chr7 HAVANA gene 53002420 53003429 1010.0 + 0 ENSG00000223970.1 processed_pseudogene AC074397.1 1 OTTHUMG00000155993.1 pseudo_consens +55152 chr7 HAVANA gene 53035642 53036924 1283.0 + 0 ENSG00000221900.5 protein_coding POM121L12 2 OTTHUMG00000155995.1 +55153 chr7 HAVANA gene 53187388 53188938 1551.0 + 0 ENSG00000227344.2 processed_pseudogene HAUS6P1 1 OTTHUMG00000155994.1 pseudo_consens +55154 chr7 HAVANA gene 53316149 53316740 592.0 + 0 ENSG00000271194.1 processed_pseudogene RNF138P2 1 OTTHUMG00000184469.1 pseudo_consens +55155 chr7 ENSEMBL gene 53366058 53366209 152.0 + 0 ENSG00000199629.1 snRNA RNU1-14P 3 +55156 chr7 ENSEMBL gene 53490148 53490439 292.0 - 0 ENSG00000222154.1 misc_RNA RN7SKP218 3 +55157 chr7 HAVANA gene 53514992 53517116 366.0 - 0 ENSG00000234105.1 lincRNA AC009468.2 1 OTTHUMG00000156043.1 +55158 chr7 HAVANA gene 53559214 53568249 437.0 - 0 ENSG00000228627.1 lincRNA AC009468.1 1 OTTHUMG00000156038.1 +55159 chr7 ENSEMBL gene 53776136 53776324 189.0 + 0 ENSG00000222355.1 snRNA RNU2-29P 3 +55160 chr7 HAVANA gene 53779783 53780263 392.0 + 0 ENSG00000271306.1 processed_pseudogene RAC1P9 1 OTTHUMG00000184468.1 pseudo_consens +55161 chr7 HAVANA gene 53787167 53787298 132.0 + 0 ENSG00000232418.1 processed_pseudogene AC074348.1 2 OTTHUMG00000156042.1 +55162 chr7 HAVANA gene 53655509 53811931 3484.0 - 0 ENSG00000205628.2 lincRNA LINC01446 2 OTTHUMG00000156039.1 +55163 chr7 HAVANA gene 53862233 53863339 1107.0 + 0 ENSG00000235454.1 processed_pseudogene HAUS6P3 1 OTTHUMG00000156040.1 pseudo_consens +55164 chr7 HAVANA gene 53926676 53947744 625.0 - 0 ENSG00000238131.1 lincRNA AC073521.1 1 OTTHUMG00000156041.1 +55165 chr7 HAVANA gene 54201224 54202421 1198.0 + 0 ENSG00000280920.1 lincRNA AC092848.1 2 OTTHUMG00000189727.1 +55166 chr7 HAVANA gene 54330697 54349849 1146.0 + 0 ENSG00000231427.5 lincRNA LINC01445 2 OTTHUMG00000156067.1 +55167 chr7 HAVANA gene 54419444 54420328 885.0 + 0 ENSG00000213673.3 processed_pseudogene SLC25A5P3 1 OTTHUMG00000156066.1 pseudo_consens +55168 chr7 HAVANA gene 54542325 54571080 5967.0 + 0 ENSG00000170419.10 protein_coding VSTM2A 1 OTTHUMG00000129271.3 overlapping_locus +55169 chr7 HAVANA gene 54556970 54571726 3031.0 + 0 ENSG00000224223.1 sense_overlapping VSTM2A-OT1 2 OTTHUMG00000156070.1 overlapping_locus +55170 chr7 HAVANA gene 54576052 54578794 757.0 - 0 ENSG00000228735.1 lincRNA AC011228.1 2 OTTHUMG00000156065.1 +55171 chr7 ENSEMBL gene 54621025 54621131 107.0 + 0 ENSG00000200471.1 snRNA RNU6-1125P 3 +55172 chr7 HAVANA gene 54656358 54656734 377.0 + 0 ENSG00000232612.1 processed_pseudogene RPL31P35 1 OTTHUMG00000156068.1 pseudo_consens +55173 chr7 HAVANA gene 54752250 54759974 1842.0 - 0 ENSG00000132432.13 protein_coding SEC61G 2 OTTHUMG00000023430.3 +55174 chr7 HAVANA gene 54759425 54804928 481.0 + 0 ENSG00000234707.2 antisense AC074351.1 2 OTTHUMG00000156071.2 +55175 chr7 HAVANA gene 54933699 54938184 4486.0 + 0 ENSG00000218586.3 processed_pseudogene AC006971.1 1 OTTHUMG00000156128.1 pseudo_consens +55176 chr7 HAVANA gene 55179750 55188934 2806.0 - 0 ENSG00000224057.1 antisense EGFR-AS1 2 OTTHUMG00000156126.1 +55177 chr7 HAVANA gene 55019021 55211628 12521.0 + 0 ENSG00000146648.17 protein_coding EGFR 1 OTTHUMG00000023661.4 +55178 chr7 HAVANA gene 55244247 55245681 1435.0 + 0 ENSG00000237210.1 processed_pseudogene AC073324.1 1 OTTHUMG00000156123.2 pseudo_consens +55179 chr7 HAVANA gene 55235965 55255635 2941.0 - 0 ENSG00000280890.1 lincRNA ELDR 2 OTTHUMG00000189565.1 +55180 chr7 HAVANA gene 55259809 55260256 448.0 - 0 ENSG00000230564.1 processed_pseudogene CALM1P2 1 OTTHUMG00000156129.1 pseudo_consens +55181 chr7 HAVANA gene 55342316 55344958 2643.0 + 0 ENSG00000230936.1 processed_pseudogene AC073347.1 1 OTTHUMG00000156118.1 pseudo_consens +55182 chr7 HAVANA gene 55365448 55433742 5235.0 + 0 ENSG00000132434.9 protein_coding LANCL2 2 OTTHUMG00000023779.4 +55183 chr7 HAVANA gene 55436056 55572988 5364.0 - 0 ENSG00000154978.12 protein_coding VOPP1 1 OTTHUMG00000156124.4 +55184 chr7 HAVANA gene 55573171 55588336 552.0 + 0 ENSG00000223475.1 antisense AC099681.1 1 OTTHUMG00000156119.1 +55185 chr7 HAVANA gene 55592074 55593193 939.0 + 0 ENSG00000233977.1 lincRNA AC099681.3 2 OTTHUMG00000156131.1 +55186 chr7 HAVANA gene 55593777 55595006 543.0 + 0 ENSG00000231394.1 lincRNA AC099681.2 1 OTTHUMG00000156122.1 +55187 chr7 HAVANA gene 55638274 55638842 569.0 - 0 ENSG00000234844.1 processed_pseudogene CDC42P2 1 OTTHUMG00000156120.1 pseudo_consens +55188 chr7 HAVANA gene 55645620 55646951 1332.0 + 0 ENSG00000235207.1 processed_pseudogene TUBBP6 1 OTTHUMG00000156117.1 pseudo_consens +55189 chr7 HAVANA gene 55656768 55678490 1948.0 - 0 ENSG00000231317.1 unprocessed_pseudogene AC091812.1 2 OTTHUMG00000156127.1 +55190 chr7 ENSEMBL gene 55685977 55686081 105.0 + 0 ENSG00000252857.1 snRNA RNU6-389P 3 +55191 chr7 HAVANA gene 55681074 55713252 3458.0 - 0 ENSG00000176826.15 transcribed_unprocessed_pseudogene FKBP9P1 2 OTTHUMG00000097835.3 +55192 chr7 ENSEMBL gene 55731100 55731403 304.0 + 0 ENSG00000275853.1 misc_RNA RF00017 3 +55193 chr7 HAVANA gene 55732144 55732431 288.0 + 0 ENSG00000224971.1 processed_pseudogene SUMO2P3 1 OTTHUMG00000156130.1 pseudo_consens +55194 chr7 HAVANA gene 55736779 55739605 2827.0 + 0 ENSG00000237799.2 processed_pseudogene CICP11 1 OTTHUMG00000156121.2 pseudo_consens +55195 chr7 HAVANA gene 55741525 55741869 345.0 + 0 ENSG00000275875.1 processed_pseudogene AC091812.3 2 OTTHUMG00000187669.1 +55196 chr7 HAVANA gene 55743073 55743457 385.0 + 0 ENSG00000273720.1 processed_pseudogene AC091812.2 2 OTTHUMG00000187670.1 +55197 chr7 HAVANA gene 55764797 55773288 261.0 + 0 ENSG00000226278.1 unprocessed_pseudogene PSPHP1 2 OTTHUMG00000156125.1 +55198 chr7 ENSEMBL gene 55789368 55789474 107.0 + 0 ENSG00000206729.1 snRNA RNU6-1126P 3 +55199 chr7 HAVANA gene 55797946 55798480 535.0 - 0 ENSG00000235738.1 processed_pseudogene AC092647.4 2 OTTHUMG00000156133.1 overlapping_locus +55200 chr7 HAVANA gene 55798034 55798876 843.0 + 0 ENSG00000225270.1 processed_pseudogene CICP12 1 OTTHUMG00000156173.1 pseudo_consens +55201 chr7 HAVANA gene 55810779 55811411 633.0 - 0 ENSG00000229762.1 processed_pseudogene AC092647.3 1 OTTHUMG00000156134.1 pseudo_consens,overlapping_locus +55202 chr7 HAVANA gene 55793544 55862789 3905.0 - 0 ENSG00000154997.8 protein_coding SEPT14 2 OTTHUMG00000129341.3 overlapping_locus +55203 chr7 HAVANA gene 55876738 55877024 287.0 - 0 ENSG00000225018.1 processed_pseudogene AC092647.1 1 OTTHUMG00000156174.1 pseudo_consens +55204 chr7 HAVANA gene 55877912 55878164 253.0 + 0 ENSG00000227499.1 processed_pseudogene AC092647.2 1 OTTHUMG00000156176.1 pseudo_consens +55205 chr7 HAVANA gene 55887475 55942530 6461.0 + 0 ENSG00000178665.15 protein_coding ZNF713 2 OTTHUMG00000156175.4 overlapping_locus +55206 chr7 HAVANA gene 55887277 55955239 1732.0 + 0 ENSG00000249773.3 protein_coding AC092647.5 1 OTTHUMG00000160988.1 overlapping_locus +55207 chr7 HAVANA gene 55951819 55956501 2159.0 + 0 ENSG00000239789.5 protein_coding MRPS17 2 OTTHUMG00000023153.5 overlapping_locus +55208 chr7 HAVANA gene 55951793 56000181 5651.0 + 0 ENSG00000146729.9 protein_coding NIPSNAP2 1 OTTHUMG00000022932.4 overlapping_locus +55209 chr7 HAVANA gene 56011051 56051604 2762.0 - 0 ENSG00000146733.13 protein_coding PSPH 2 OTTHUMG00000023441.10 +55210 chr7 ENSEMBL gene 56055365 56055502 138.0 + 0 ENSG00000206603.1 snoRNA SNORA22B 3 +55211 chr7 ENSEMBL gene 56060470 56060602 133.0 + 0 ENSG00000207168.1 snoRNA SNORA15 3 +55212 chr7 HAVANA gene 56051630 56063989 3901.0 + 0 ENSG00000146731.10 protein_coding CCT6A 2 OTTHUMG00000022842.3 ncRNA_host +55213 chr7 HAVANA gene 56064002 56080670 4101.0 + 0 ENSG00000129103.17 protein_coding SUMF2 1 OTTHUMG00000129373.9 +55214 chr7 HAVANA gene 56080283 56092996 2762.0 - 0 ENSG00000164776.9 protein_coding PHKG1 2 OTTHUMG00000023869.4 +55215 chr7 HAVANA gene 56101569 56106576 1132.0 - 0 ENSG00000106153.12 protein_coding CHCHD2 2 OTTHUMG00000129429.2 +55216 chr7 HAVANA gene 56114681 56116400 603.0 - 0 ENSG00000185290.3 protein_coding NUPR2 2 OTTHUMG00000156224.2 +55217 chr7 HAVANA gene 56163145 56163533 389.0 + 0 ENSG00000230191.1 processed_pseudogene AC006970.1 1 OTTHUMG00000156228.2 pseudo_consens +55218 chr7 HAVANA gene 56175634 56176412 779.0 + 0 ENSG00000233028.1 processed_pseudogene AC006970.2 1 OTTHUMG00000156223.1 pseudo_consens +55219 chr7 HAVANA gene 56214979 56220747 759.0 + 0 ENSG00000285670.1 lincRNA AC006970.3 2 OTTHUMG00000193122.1 +55220 chr7 HAVANA gene 56228634 56229782 1149.0 - 0 ENSG00000227491.1 processed_pseudogene CCNJP1 1 OTTHUMG00000156229.1 pseudo_consens +55221 chr7 HAVANA gene 56288230 56291425 2884.0 + 0 ENSG00000223559.1 processed_pseudogene AC073136.1 1 OTTHUMG00000156227.1 pseudo_consens +55222 chr7 HAVANA gene 56304678 56305526 849.0 - 0 ENSG00000224155.2 processed_pseudogene AC073136.2 1 OTTHUMG00000156230.1 pseudo_consens +55223 chr7 HAVANA gene 56322804 56323601 340.0 + 0 ENSG00000203462.2 unprocessed_pseudogene AC093392.1 2 OTTHUMG00000156222.1 +55224 chr7 ENSEMBL gene 56340231 56340337 107.0 - 0 ENSG00000202296.1 snRNA RNU6-1335P 3 +55225 chr7 HAVANA gene 56360362 56360541 180.0 - 0 ENSG00000231299.1 unprocessed_pseudogene SEPT14P24 2 OTTHUMG00000156225.1 +55226 chr7 HAVANA gene 56362458 56365270 2813.0 + 0 ENSG00000225371.1 processed_pseudogene CICP8 1 OTTHUMG00000156226.1 pseudo_consens +55227 chr7 HAVANA gene 56380976 56381312 337.0 + 0 ENSG00000224370.1 processed_pseudogene AC093392.2 1 OTTHUMG00000156221.1 pseudo_consens +55228 chr7 ENSEMBL gene 56402070 56402173 104.0 - 0 ENSG00000223330.1 snRNA RNU6-1052P 3 +55229 chr7 HAVANA gene 56408699 56409210 186.0 - 0 ENSG00000232944.1 processed_pseudogene AC092423.1 2 OTTHUMG00000156294.1 +55230 chr7 HAVANA gene 56421857 56448375 1835.0 - 0 ENSG00000237268.2 transcribed_unprocessed_pseudogene AC092447.7 2 OTTHUMG00000156291.1 +55231 chr7 HAVANA gene 56462536 56467771 1652.0 + 0 ENSG00000278205.1 unprocessed_pseudogene AC092447.10 2 OTTHUMG00000187671.1 +55232 chr7 HAVANA gene 56482105 56483295 673.0 - 0 ENSG00000225488.1 lincRNA AC092447.4 2 OTTHUMG00000156289.1 +55233 chr7 HAVANA gene 56490682 56491635 954.0 + 0 ENSG00000226485.1 processed_pseudogene RBM22P3 2 OTTHUMG00000156300.1 +55234 chr7 HAVANA gene 56493124 56497285 4162.0 + 0 ENSG00000261275.1 lincRNA AC092447.8 2 OTTHUMG00000173245.1 +55235 chr7 HAVANA gene 56502284 56503044 761.0 - 0 ENSG00000231504.1 processed_pseudogene NMD3P2 1 OTTHUMG00000156288.1 pseudo_consens +55236 chr7 HAVANA gene 56525428 56526113 686.0 - 0 ENSG00000223740.1 processed_pseudogene AC092447.3 2 OTTHUMG00000156298.1 +55237 chr7 HAVANA gene 56534230 56538130 2741.0 - 0 ENSG00000233288.1 lincRNA AC092447.5 2 OTTHUMG00000156290.1 +55238 chr7 HAVANA gene 56559221 56559958 738.0 + 0 ENSG00000224947.1 processed_pseudogene VN1R25P 2 OTTHUMG00000156299.1 +55239 chr7 HAVANA gene 56567906 56568858 669.0 - 0 ENSG00000213650.3 processed_pseudogene AC092447.2 1 OTTHUMG00000156297.1 pseudo_consens +55240 chr7 HAVANA gene 56577848 56578866 210.0 + 0 ENSG00000234716.1 processed_pseudogene AC092447.6 2 OTTHUMG00000156295.1 +55241 chr7 HAVANA gene 56597379 56598342 964.0 + 0 ENSG00000213067.2 processed_pseudogene AC092447.1 1 OTTHUMG00000156296.1 pseudo_consens +55242 chr7 HAVANA gene 56603410 56603553 144.0 + 0 ENSG00000271047.1 processed_pseudogene AC092447.9 1 OTTHUMG00000184467.1 pseudo_consens +55243 chr7 HAVANA gene 56631739 56632727 694.0 - 0 ENSG00000229909.1 processed_pseudogene TRIM60P16 2 OTTHUMG00000156293.1 +55244 chr7 HAVANA gene 56638943 56650696 1591.0 - 0 ENSG00000228303.1 unprocessed_pseudogene AC095038.1 2 OTTHUMG00000156287.1 +55245 chr7 HAVANA gene 56685036 56687366 1070.0 - 0 ENSG00000277174.1 unprocessed_pseudogene AC095038.2 2 OTTHUMG00000187672.1 +55246 chr7 HAVANA gene 56736396 56736590 195.0 - 0 ENSG00000282879.1 processed_pseudogene AC095038.3 2 OTTHUMG00000191510.1 +55247 chr7 HAVANA gene 56805336 56808148 2813.0 + 0 ENSG00000277253.1 processed_pseudogene AC118758.2 1 OTTHUMG00000187673.1 pseudo_consens +55248 chr7 HAVANA gene 56809214 56848800 24137.0 - 0 ENSG00000279072.1 lincRNA AC118758.3 2 OTTHUMG00000189377.1 +55249 chr7 HAVANA gene 56875385 56882146 610.0 - 0 ENSG00000233437.1 transcribed_unprocessed_pseudogene AC118758.1 2 OTTHUMG00000156292.1 +55250 chr7 HAVANA gene 56940341 56944353 544.0 - 0 ENSG00000225244.3 unprocessed_pseudogene AC069152.1 2 OTTHUMG00000156100.1 +55251 chr7 ENSEMBL gene 56955785 56955864 80.0 - 0 ENSG00000264426.1 miRNA MIR4283-1 3 +55252 chr7 HAVANA gene 56991888 57009149 2691.0 + 0 ENSG00000189166.6 unprocessed_pseudogene TNRC18P3 1 OTTHUMG00000156098.1 pseudo_consens +55253 chr7 HAVANA gene 57014285 57020273 971.0 - 0 ENSG00000214668.4 unprocessed_pseudogene SLC29A4P1 2 OTTHUMG00000156099.1 +55254 chr7 HAVANA gene 57060590 57061301 370.0 - 0 ENSG00000229508.2 unprocessed_pseudogene PHKG1P4 2 OTTHUMG00000156681.1 +55255 chr7 HAVANA gene 57067950 57074664 233.0 - 0 ENSG00000275061.2 unprocessed_pseudogene AC122133.1 2 OTTHUMG00000187674.2 +55256 chr7 HAVANA gene 57119614 57139864 2075.0 - 0 ENSG00000185177.12 protein_coding ZNF479 2 OTTHUMG00000156682.1 +55257 chr7 HAVANA gene 57147986 57150347 1980.0 - 0 ENSG00000235095.1 unprocessed_pseudogene AC099654.2 1 OTTHUMG00000156694.1 pseudo_consens +55258 chr7 HAVANA gene 57163168 57166024 2127.0 - 0 ENSG00000283431.1 unprocessed_pseudogene AC099654.6 2 OTTHUMG00000191810.1 +55259 chr7 HAVANA gene 57167039 57167245 207.0 + 0 ENSG00000284474.1 unprocessed_pseudogene AC099654.12 2 OTTHUMG00000192036.1 overlapping_locus +55260 chr7 HAVANA gene 57167200 57167880 681.0 + 0 ENSG00000283547.1 unprocessed_pseudogene AC099654.7 2 OTTHUMG00000191811.1 overlapping_locus +55261 chr7 HAVANA gene 57167880 57168651 772.0 + 0 ENSG00000231537.1 unprocessed_pseudogene MTCO3P10 2 OTTHUMG00000156676.1 +55262 chr7 HAVANA gene 57168725 57169074 350.0 + 0 ENSG00000283230.1 unprocessed_pseudogene AC099654.5 2 OTTHUMG00000191812.1 +55263 chr7 HAVANA gene 57169143 57169412 270.0 + 0 ENSG00000283481.1 unprocessed_pseudogene MTND4LP32 2 OTTHUMG00000191813.1 +55264 chr7 HAVANA gene 57169406 57170771 1366.0 + 0 ENSG00000225295.1 unprocessed_pseudogene MTND4P4 2 OTTHUMG00000156690.1 +55265 chr7 HAVANA gene 57170974 57172771 1798.0 + 0 ENSG00000228440.1 unprocessed_pseudogene MTND5P6 2 OTTHUMG00000156679.1 +55266 chr7 HAVANA gene 57172772 57173283 512.0 - 0 ENSG00000283311.1 unprocessed_pseudogene MTND6P29 2 OTTHUMG00000191725.1 +55267 chr7 HAVANA gene 57173357 57174362 1006.0 + 0 ENSG00000224880.1 unprocessed_pseudogene MTCYBP29 2 OTTHUMG00000156688.1 +55268 chr7 HAVANA gene 57177409 57180052 665.0 - 0 ENSG00000224723.1 unprocessed_pseudogene GUSBP10 2 OTTHUMG00000156683.1 +55269 chr7 HAVANA gene 57185788 57186202 415.0 + 0 ENSG00000230764.1 unprocessed_pseudogene MTND1P4 2 OTTHUMG00000156687.1 +55270 chr7 HAVANA gene 57186412 57187441 1030.0 + 0 ENSG00000237309.1 unprocessed_pseudogene MTND2P6 1 OTTHUMG00000156691.1 pseudo_consens +55271 chr7 HAVANA gene 57187892 57189437 1546.0 + 0 ENSG00000236692.2 unprocessed_pseudogene AC099654.3 2 OTTHUMG00000156693.2 +55272 chr7 HAVANA gene 57189578 57190226 649.0 + 0 ENSG00000284291.1 unprocessed_pseudogene AC099654.11 2 OTTHUMG00000192007.1 +55273 chr7 HAVANA gene 57190300 57190460 161.0 + 0 ENSG00000284098.1 unprocessed_pseudogene AC099654.9 2 OTTHUMG00000192008.1 +55274 chr7 HAVANA gene 57190461 57191138 678.0 + 0 ENSG00000283626.1 unprocessed_pseudogene AC099654.8 2 OTTHUMG00000191807.1 +55275 chr7 HAVANA gene 57191141 57191927 787.0 + 0 ENSG00000228851.1 unprocessed_pseudogene MTCO3P4 2 OTTHUMG00000156678.1 +55276 chr7 HAVANA gene 57191997 57192337 341.0 + 0 ENSG00000284558.1 unprocessed_pseudogene AC099654.13 2 OTTHUMG00000192009.1 +55277 chr7 HAVANA gene 57192405 57192698 294.0 + 0 ENSG00000284221.1 unprocessed_pseudogene AC099654.10 2 OTTHUMG00000192010.1 +55278 chr7 HAVANA gene 57192695 57194068 1374.0 + 0 ENSG00000227584.2 unprocessed_pseudogene MTND4P5 2 OTTHUMG00000156680.2 +55279 chr7 HAVANA gene 57194257 57196054 1798.0 + 0 ENSG00000230531.1 unprocessed_pseudogene MTND5P7 2 OTTHUMG00000156692.1 +55280 chr7 HAVANA gene 57196056 57196564 509.0 - 0 ENSG00000284572.1 unprocessed_pseudogene AC099654.14 2 OTTHUMG00000191908.1 +55281 chr7 HAVANA gene 57196638 57197772 1135.0 + 0 ENSG00000234671.1 unprocessed_pseudogene MTCYBP5 2 OTTHUMG00000156684.1 +55282 chr7 HAVANA gene 57200825 57203597 720.0 - 0 ENSG00000169325.10 unprocessed_pseudogene GUSBP12 2 OTTHUMG00000156685.1 +55283 chr7 HAVANA gene 57209865 57222174 835.0 - 0 ENSG00000234089.1 lincRNA AC099654.1 1 OTTHUMG00000156695.1 +55284 chr7 ENSEMBL gene 57227001 57227066 66.0 + 0 ENSG00000238431.1 snRNA RNU7-157P 3 +55285 chr7 HAVANA gene 57270839 57275197 1059.0 + 0 ENSG00000274299.1 unprocessed_pseudogene AC099654.4 2 OTTHUMG00000187675.1 +55286 chr7 HAVANA gene 57402181 57404717 2537.0 - 0 ENSG00000280225.1 TEC AC237221.2 2 OTTHUMG00000188289.1 +55287 chr7 ENSEMBL gene 57405025 57405090 66.0 + 0 ENSG00000266168.1 miRNA MIR3147 3 +55288 chr7 HAVANA gene 57404771 57416203 3154.0 + 0 ENSG00000260653.5 lincRNA AC237221.1 2 OTTHUMG00000175570.1 ncRNA_host +55289 chr7 HAVANA gene 57422830 57423725 896.0 - 0 ENSG00000227182.1 unitary_pseudogene VN1R28P 2 OTTHUMG00000154495.1 +55290 chr7 HAVANA gene 57424503 57425676 1174.0 + 0 ENSG00000235368.1 processed_pseudogene SAPCD2P2 1 OTTHUMG00000156686.2 pseudo_consens +55291 chr7 HAVANA gene 57450177 57473546 5197.0 + 0 ENSG00000182111.8 protein_coding ZNF716 2 OTTHUMG00000156689.1 +55292 chr7 HAVANA gene 57485166 57485895 200.0 + 0 ENSG00000270957.1 processed_pseudogene AC092175.1 2 OTTHUMG00000184463.1 +55293 chr7 HAVANA gene 57599794 57610104 303.0 + 0 ENSG00000233601.1 unprocessed_pseudogene NCOR1P3 2 OTTHUMG00000156081.1 +55294 chr7 HAVANA gene 57629285 57630151 867.0 + 0 ENSG00000270749.1 processed_pseudogene AC064862.7 1 OTTHUMG00000184462.1 pseudo_consens +55295 chr7 HAVANA gene 57638725 57639112 388.0 + 0 ENSG00000229627.2 processed_pseudogene BSNDP4 2 OTTHUMG00000156086.1 +55296 chr7 HAVANA gene 57628479 57645189 1022.0 - 0 ENSG00000243981.4 transcribed_processed_pseudogene AC064862.6 2 OTTHUMG00000156084.2 +55297 chr7 HAVANA gene 57650521 57650854 334.0 + 0 ENSG00000237639.2 unprocessed_pseudogene AC064862.5 2 OTTHUMG00000156089.1 +55298 chr7 HAVANA gene 57650381 57651119 201.0 - 0 ENSG00000230796.1 unprocessed_pseudogene AC064862.1 2 OTTHUMG00000156095.1 +55299 chr7 HAVANA gene 57652875 57653208 334.0 + 0 ENSG00000236261.1 unprocessed_pseudogene AC064862.4 2 OTTHUMG00000156087.1 +55300 chr7 HAVANA gene 57652736 57653459 196.0 - 0 ENSG00000233962.1 unprocessed_pseudogene AC064862.2 2 OTTHUMG00000156082.1 +55301 chr7 HAVANA gene 57654822 57655392 571.0 + 0 ENSG00000234085.1 unprocessed_pseudogene AC064862.3 2 OTTHUMG00000156092.1 +55302 chr7 HAVANA gene 57770619 57770946 328.0 - 0 ENSG00000227015.1 unprocessed_pseudogene AC023141.4 2 OTTHUMG00000156097.1 +55303 chr7 HAVANA gene 57770966 57771173 208.0 + 0 ENSG00000232161.1 unprocessed_pseudogene AC023141.8 2 OTTHUMG00000156094.1 +55304 chr7 HAVANA gene 57772584 57773199 616.0 - 0 ENSG00000230271.1 unprocessed_pseudogene AC023141.5 2 OTTHUMG00000156079.1 +55305 chr7 HAVANA gene 57773183 57773381 199.0 + 0 ENSG00000250923.1 unprocessed_pseudogene AC023141.12 2 OTTHUMG00000156077.1 +55306 chr7 HAVANA gene 57776972 57777521 550.0 - 0 ENSG00000224484.1 unprocessed_pseudogene AC023141.2 2 OTTHUMG00000156091.1 +55307 chr7 HAVANA gene 57817601 57818012 412.0 - 0 ENSG00000236907.1 unprocessed_pseudogene AC023141.9 2 OTTHUMG00000156078.1 +55308 chr7 HAVANA gene 57817996 57818197 202.0 + 0 ENSG00000250618.1 unprocessed_pseudogene AC023141.11 2 OTTHUMG00000156096.1 +55309 chr7 HAVANA gene 57820032 57820410 379.0 - 0 ENSG00000223836.1 unprocessed_pseudogene AC023141.1 2 OTTHUMG00000156085.1 +55310 chr7 HAVANA gene 57819819 57820627 278.0 + 0 ENSG00000224653.1 unprocessed_pseudogene AC023141.3 2 OTTHUMG00000156083.1 +55311 chr7 HAVANA gene 57822465 57822801 337.0 - 0 ENSG00000231232.4 unprocessed_pseudogene AC023141.6 2 OTTHUMG00000156093.1 +55312 chr7 HAVANA gene 57822201 57822942 200.0 + 0 ENSG00000237236.1 unprocessed_pseudogene AC023141.10 2 OTTHUMG00000156090.1 +55313 chr7 HAVANA gene 57835309 57836251 943.0 - 0 ENSG00000271696.1 processed_pseudogene AC023141.13 1 OTTHUMG00000184699.1 pseudo_consens +55314 chr7 HAVANA gene 57828331 57837046 407.0 + 0 ENSG00000231484.1 unprocessed_pseudogene AC023141.7 2 OTTHUMG00000156088.1 +55315 chr7 HAVANA gene 62275361 62275678 318.0 - 0 ENSG00000233918.1 processed_pseudogene AC128676.1 2 OTTHUMG00000156204.2 +55316 chr7 ENSEMBL gene 63011463 63011569 107.0 - 0 ENSG00000207443.1 snRNA RNU6-417P 3 +55317 chr7 HAVANA gene 63044827 63054431 419.0 - 0 ENSG00000227148.1 lincRNA AC069285.1 2 OTTHUMG00000156274.1 +55318 chr7 HAVANA gene 63057453 63060084 275.0 + 0 ENSG00000233454.1 unprocessed_pseudogene AC069285.2 2 OTTHUMG00000156261.1 +55319 chr7 HAVANA gene 63087070 63088261 1192.0 - 0 ENSG00000233782.1 processed_pseudogene ZNF90P3 2 OTTHUMG00000156264.2 +55320 chr7 HAVANA gene 63113635 63114805 1171.0 - 0 ENSG00000234312.1 processed_pseudogene SAPCD2P4 1 OTTHUMG00000156271.2 pseudo_consens +55321 chr7 HAVANA gene 63117501 63154934 648.0 - 0 ENSG00000231523.1 unprocessed_pseudogene SEPT14P1 2 OTTHUMG00000156275.1 +55322 chr7 ENSEMBL gene 63175940 63176019 80.0 - 0 ENSG00000199231.1 snoRNA RF00494 3 +55323 chr7 HAVANA gene 63209219 63211822 261.0 + 0 ENSG00000237572.1 unprocessed_pseudogene AC092001.1 2 OTTHUMG00000156260.1 +55324 chr7 HAVANA gene 63233035 63234245 614.0 - 0 ENSG00000226075.2 unprocessed_pseudogene PHKG1P1 2 OTTHUMG00000156263.1 overlapping_locus +55325 chr7 HAVANA gene 63233115 63241645 351.0 - 0 ENSG00000244550.1 processed_transcript AC006455.8 2 OTTHUMG00000156267.1 overlapping_locus +55326 chr7 HAVANA gene 63241590 63248321 306.0 - 0 ENSG00000240651.1 unprocessed_pseudogene SEPT7P4 2 OTTHUMG00000156262.3 overlapping_locus +55327 chr7 HAVANA gene 63263065 63263456 392.0 + 0 ENSG00000236638.1 processed_pseudogene AC006455.7 2 OTTHUMG00000156269.1 +55328 chr7 HAVANA gene 63291518 63304056 1641.0 - 0 ENSG00000185037.9 transcribed_unprocessed_pseudogene ZNF733P 2 OTTHUMG00000156270.1 +55329 chr7 HAVANA gene 63342711 63343200 490.0 + 0 ENSG00000227298.1 processed_pseudogene ARAFP3 1 OTTHUMG00000156266.1 pseudo_consens +55330 chr7 HAVANA gene 63345840 63346732 893.0 + 0 ENSG00000232165.1 processed_pseudogene AC006455.6 2 OTTHUMG00000156265.1 +55331 chr7 HAVANA gene 63349154 63350059 906.0 - 0 ENSG00000227545.1 processed_pseudogene AC006455.2 1 OTTHUMG00000156276.1 pseudo_consens,overlapping_locus +55332 chr7 HAVANA gene 63348861 63351774 2914.0 + 0 ENSG00000230000.2 processed_transcript AC006455.5 2 OTTHUMG00000187145.1 +55333 chr7 HAVANA gene 63326674 63354326 517.0 - 0 ENSG00000226587.1 lincRNA AC006455.1 2 OTTHUMG00000156272.1 overlapping_locus +55334 chr7 HAVANA gene 63354033 63354365 333.0 + 0 ENSG00000227923.1 processed_pseudogene AC006455.3 2 OTTHUMG00000156268.1 +55335 chr7 HAVANA gene 63354457 63359306 528.0 + 0 ENSG00000229301.1 lincRNA AC006455.4 2 OTTHUMG00000156273.1 +55336 chr7 HAVANA gene 63367427 63368156 730.0 - 0 ENSG00000236284.1 processed_pseudogene VN1R31P 2 OTTHUMG00000156377.1 +55337 chr7 HAVANA gene 63377329 63378233 905.0 + 0 ENSG00000230361.1 unitary_pseudogene VN1R32P 2 OTTHUMG00000154490.1 +55338 chr7 HAVANA gene 63380466 63385789 339.0 - 0 ENSG00000230600.1 lincRNA AC073188.3 2 OTTHUMG00000156385.1 +55339 chr7 HAVANA gene 63388808 63393657 528.0 - 0 ENSG00000232817.1 lincRNA AC073188.4 2 OTTHUMG00000156386.1 +55340 chr7 HAVANA gene 63393749 63394109 361.0 - 0 ENSG00000223889.1 processed_pseudogene AC073188.1 2 OTTHUMG00000156382.1 +55341 chr7 HAVANA gene 63394277 63395439 673.0 + 0 ENSG00000234387.1 lincRNA AC073188.5 2 OTTHUMG00000156380.1 overlapping_locus +55342 chr7 HAVANA gene 63398046 63398957 912.0 + 0 ENSG00000234467.1 processed_pseudogene SLC25A1P2 1 OTTHUMG00000156383.1 pseudo_consens,overlapping_locus +55343 chr7 HAVANA gene 63396341 63399250 2910.0 - 0 ENSG00000268181.3 processed_transcript AC073188.6 2 OTTHUMG00000188126.1 +55344 chr7 HAVANA gene 63401385 63402271 887.0 - 0 ENSG00000227426.1 unitary_pseudogene VN1R33P 2 OTTHUMG00000154474.1 +55345 chr7 HAVANA gene 63404842 63405400 559.0 - 0 ENSG00000224368.1 processed_pseudogene ARAFP2 1 OTTHUMG00000156379.1 pseudo_consens +55346 chr7 HAVANA gene 63393788 63422046 701.0 + 0 ENSG00000227305.1 lincRNA AC073188.2 2 OTTHUMG00000156378.1 overlapping_locus +55347 chr7 HAVANA gene 63449819 63456687 1534.0 + 0 ENSG00000197990.6 unprocessed_pseudogene ZNF734P 2 OTTHUMG00000156384.1 +55348 chr7 HAVANA gene 63480598 63480989 392.0 - 0 ENSG00000230132.1 processed_pseudogene AC006457.1 2 OTTHUMG00000156381.1 +55349 chr7 HAVANA gene 63495799 63502536 306.0 + 0 ENSG00000164740.5 processed_pseudogene SEPT7P5 2 OTTHUMG00000156390.1 +55350 chr7 HAVANA gene 63509303 63510165 863.0 + 0 ENSG00000228645.2 processed_pseudogene PHKG1P2 2 OTTHUMG00000156389.1 +55351 chr7 HAVANA gene 63556598 63562588 1089.0 + 0 ENSG00000214660.6 unprocessed_pseudogene SLC29A4P2 2 OTTHUMG00000156502.1 +55352 chr7 HAVANA gene 63567743 63585075 2714.0 - 0 ENSG00000223566.1 unprocessed_pseudogene TNRC18P2 2 OTTHUMG00000156501.1 +55353 chr7 ENSEMBL gene 63621090 63621169 80.0 + 0 ENSG00000265214.1 miRNA MIR4283-2 3 +55354 chr7 HAVANA gene 63632608 63636617 570.0 + 0 ENSG00000226401.3 unprocessed_pseudogene AC006015.1 2 OTTHUMG00000156503.1 +55355 chr7 HAVANA gene 63699390 63700441 223.0 + 0 ENSG00000226411.1 unprocessed_pseudogene AC079355.1 2 OTTHUMG00000156504.1 +55356 chr7 HAVANA gene 63768257 63771047 2705.0 - 0 ENSG00000271466.1 processed_pseudogene CICP24 1 OTTHUMG00000184703.1 pseudo_consens +55357 chr7 HAVANA gene 63789909 63790098 190.0 + 0 ENSG00000227397.1 processed_pseudogene AC079355.2 2 OTTHUMG00000156547.1 +55358 chr7 HAVANA gene 63843314 63843505 192.0 + 0 ENSG00000236574.1 processed_pseudogene AC092634.6 2 OTTHUMG00000156546.1 +55359 chr7 HAVANA gene 63876341 63877350 1010.0 + 0 ENSG00000225451.1 processed_pseudogene AC092634.2 2 OTTHUMG00000156549.1 +55360 chr7 HAVANA gene 63893286 63894641 1356.0 + 0 ENSG00000235720.1 processed_pseudogene GABPAP 1 OTTHUMG00000156550.1 pseudo_consens +55361 chr7 HAVANA gene 63888200 63900794 1856.0 - 0 ENSG00000236299.7 lincRNA AC092634.5 1 OTTHUMG00000156552.4 +55362 chr7 HAVANA gene 63908966 63910453 1488.0 - 0 ENSG00000226342.1 processed_pseudogene NMD3P1 1 OTTHUMG00000156544.1 pseudo_consens +55363 chr7 HAVANA gene 63900823 63917994 637.0 + 0 ENSG00000226581.1 lincRNA AC092634.3 2 OTTHUMG00000156551.1 +55364 chr7 HAVANA gene 63924787 63926306 876.0 - 0 ENSG00000227910.1 transcribed_processed_pseudogene AC092634.4 1 OTTHUMG00000156556.1 +55365 chr7 HAVANA gene 63931141 63931968 828.0 + 0 ENSG00000213645.2 processed_pseudogene SLC25A1P3 1 OTTHUMG00000156555.1 pseudo_consens +55366 chr7 HAVANA gene 63934449 63935331 883.0 - 0 ENSG00000233173.1 unitary_pseudogene VN1R34P 2 OTTHUMG00000154486.1 +55367 chr7 HAVANA gene 63937905 63938509 605.0 - 0 ENSG00000231264.1 processed_pseudogene ARAFP1 1 OTTHUMG00000188127.1 pseudo_consens +55368 chr7 HAVANA gene 63963431 63964123 693.0 - 0 ENSG00000228660.1 transcribed_unprocessed_pseudogene VN1R35P 2 OTTHUMG00000156545.1 overlapping_locus +55369 chr7 HAVANA gene 63965834 63966124 291.0 - 0 ENSG00000230639.1 unprocessed_pseudogene VN1R36P 2 OTTHUMG00000156548.1 +55370 chr7 HAVANA gene 63980385 63981477 199.0 - 0 ENSG00000176232.10 transcribed_unprocessed_pseudogene AC092634.1 2 OTTHUMG00000156553.2 overlapping_locus +55371 chr7 HAVANA gene 63959844 63981477 773.0 - 0 ENSG00000284534.1 processed_transcript AC092634.8 2 OTTHUMG00000192210.1 overlapping_locus +55372 chr7 HAVANA gene 63993904 63994006 103.0 + 0 ENSG00000278577.1 unprocessed_pseudogene AC092634.7 2 OTTHUMG00000187677.1 +55373 chr7 HAVANA gene 63998874 64016130 1453.0 + 0 ENSG00000241149.3 protein_coding AC115220.1 2 OTTHUMG00000156485.3 +55374 chr7 HAVANA gene 64024409 64030105 3508.0 - 0 ENSG00000228564.2 lincRNA LINC01005 1 OTTHUMG00000156482.2 +55375 chr7 HAVANA gene 64045443 64078549 1679.0 + 0 ENSG00000214652.5 protein_coding ZNF727 2 OTTHUMG00000156536.3 overlapping_locus +55376 chr7 HAVANA gene 64085560 64086576 719.0 + 0 ENSG00000223558.1 processed_pseudogene TRIM60P17 2 OTTHUMG00000156471.1 +55377 chr7 HAVANA gene 64104093 64105295 1203.0 - 0 ENSG00000248704.1 unprocessed_pseudogene MTND4P2 2 OTTHUMG00000156480.1 overlapping_locus +55378 chr7 HAVANA gene 64105292 64105576 285.0 - 0 ENSG00000248315.1 unprocessed_pseudogene MTND4LP2 2 OTTHUMG00000156473.1 overlapping_locus +55379 chr7 HAVANA gene 64105654 64105995 342.0 - 0 ENSG00000230052.1 unprocessed_pseudogene MTND3P2 2 OTTHUMG00000156478.1 +55380 chr7 HAVANA gene 64106065 64106819 755.0 - 0 ENSG00000233385.1 unprocessed_pseudogene MTCO3P8 2 OTTHUMG00000156470.1 +55381 chr7 HAVANA gene 64106822 64107572 673.0 - 0 ENSG00000227035.1 unprocessed_pseudogene MTATP6P18 2 OTTHUMG00000156484.1 +55382 chr7 HAVANA gene 64107829 64108486 658.0 - 0 ENSG00000234234.1 unprocessed_pseudogene MTCO2P8 2 OTTHUMG00000156476.1 +55383 chr7 HAVANA gene 64108625 64110147 1523.0 - 0 ENSG00000234700.1 unprocessed_pseudogene MTCO1P8 2 OTTHUMG00000156474.1 +55384 chr7 HAVANA gene 64110547 64111550 1004.0 - 0 ENSG00000230252.1 unprocessed_pseudogene MTND2P4 2 OTTHUMG00000156475.1 +55385 chr7 HAVANA gene 64111752 64112572 821.0 - 0 ENSG00000235646.1 unprocessed_pseudogene MTND1P2 2 OTTHUMG00000156488.1 +55386 chr7 HAVANA gene 64045429 64114556 1881.0 + 0 ENSG00000285544.1 processed_transcript AC115220.2 2 OTTHUMG00000193359.1 +55387 chr7 HAVANA gene 64141538 64142401 864.0 - 0 ENSG00000236976.1 processed_pseudogene AC091685.2 1 OTTHUMG00000156477.1 pseudo_consens +55388 chr7 HAVANA gene 64140495 64150058 448.0 + 0 ENSG00000229881.1 lincRNA AC091685.1 2 OTTHUMG00000156487.1 overlapping_locus +55389 chr7 HAVANA gene 64149685 64150432 748.0 - 0 ENSG00000213643.3 processed_pseudogene VN1R37P 2 OTTHUMG00000156479.1 +55390 chr7 HAVANA gene 64100305 64150721 1724.0 + 0 ENSG00000224458.3 transcribed_unprocessed_pseudogene GUSBP6 1 OTTHUMG00000156481.2 pseudo_consens,overlapping_locus +55391 chr7 HAVANA gene 64180006 64180892 887.0 - 0 ENSG00000235227.1 unitary_pseudogene VN1R38P 2 OTTHUMG00000154469.1 +55392 chr7 HAVANA gene 64181710 64182893 1184.0 + 0 ENSG00000213644.2 processed_pseudogene SAPCD2P1 1 OTTHUMG00000156472.1 pseudo_consens +55393 chr7 HAVANA gene 64207090 64220508 1570.0 + 0 ENSG00000223614.5 protein_coding ZNF735 2 OTTHUMG00000156539.2 +55394 chr7 HAVANA gene 64228474 64266931 1567.0 + 0 ENSG00000197123.9 protein_coding ZNF679 2 OTTHUMG00000156486.2 +55395 chr7 HAVANA gene 64307459 64354860 9409.0 + 0 ENSG00000234444.9 protein_coding ZNF736 1 OTTHUMG00000156537.4 +55396 chr7 HAVANA gene 64355078 64356199 828.0 + 0 ENSG00000227986.1 unprocessed_pseudogene TRIM60P18 2 OTTHUMG00000156540.1 +55397 chr7 HAVANA gene 64425623 64426334 211.0 - 0 ENSG00000276650.1 unprocessed_pseudogene AC022202.1 2 OTTHUMG00000187679.1 +55398 chr7 HAVANA gene 64433830 64434592 763.0 + 0 ENSG00000232727.2 processed_pseudogene YWHAEP1 1 OTTHUMG00000156252.1 pseudo_consens +55399 chr7 HAVANA gene 64443802 64444742 941.0 - 0 ENSG00000223845.1 unitary_pseudogene VN1R40P 2 OTTHUMG00000154491.1 +55400 chr7 HAVANA gene 64469185 64470653 1469.0 + 0 ENSG00000228014.1 processed_pseudogene ZNF680P1 2 OTTHUMG00000156541.1 +55401 chr7 HAVANA gene 64500825 64501729 905.0 + 0 ENSG00000228653.2 processed_pseudogene HNRNPCP7 1 OTTHUMG00000156253.1 pseudo_consens +55402 chr7 HAVANA gene 64551498 64552066 569.0 + 0 ENSG00000223974.1 processed_pseudogene BNIP3P42 1 OTTHUMG00000156543.1 pseudo_consens +55403 chr7 HAVANA gene 64519884 64563106 5586.0 - 0 ENSG00000173041.11 protein_coding ZNF680 1 OTTHUMG00000156542.2 +55404 chr7 HAVANA gene 64566814 64567443 315.0 - 0 ENSG00000235349.1 processed_pseudogene AC016769.3 1 OTTHUMG00000156535.1 pseudo_consens +55405 chr7 HAVANA gene 64569428 64570437 1010.0 - 0 ENSG00000213642.3 processed_pseudogene AC016769.1 2 OTTHUMG00000156538.1 +55406 chr7 HAVANA gene 64582733 64583207 475.0 + 0 ENSG00000224669.1 processed_pseudogene AC016769.2 1 OTTHUMG00000156251.1 pseudo_consens +55407 chr7 HAVANA gene 64590599 64591133 535.0 - 0 ENSG00000276475.1 processed_pseudogene AC016769.4 1 OTTHUMG00000187680.1 pseudo_consens +55408 chr7 ENSEMBL gene 64679064 64679176 113.0 + 0 ENSG00000275667.1 miRNA MIR6839 3 +55409 chr7 HAVANA gene 64678954 64687393 563.0 - 0 ENSG00000271550.1 processed_pseudogene BNIP3P11 1 OTTHUMG00000184529.1 pseudo_consens +55410 chr7 HAVANA gene 64666083 64711582 7162.0 + 0 ENSG00000196247.11 protein_coding ZNF107 2 OTTHUMG00000129433.3 ncRNA_host +55411 chr7 HAVANA gene 64735933 64736743 811.0 - 0 ENSG00000224172.1 processed_pseudogene AC091799.1 2 OTTHUMG00000156599.2 +55412 chr7 HAVANA gene 64768156 64769101 186.0 + 0 ENSG00000277206.1 unprocessed_pseudogene AC073349.3 2 OTTHUMG00000187681.1 +55413 chr7 HAVANA gene 64794388 64833681 2850.0 + 0 ENSG00000197008.9 protein_coding ZNF138 1 OTTHUMG00000156603.4 +55414 chr7 HAVANA gene 64835280 64836882 1603.0 - 0 ENSG00000234338.1 processed_pseudogene AC073349.2 2 OTTHUMG00000156601.1 +55415 chr7 HAVANA gene 64852397 64853354 958.0 - 0 ENSG00000182722.5 processed_pseudogene SEPHS1P1 1 OTTHUMG00000156602.1 pseudo_consens +55416 chr7 HAVANA gene 64862999 64864370 880.0 + 0 ENSG00000213640.3 processed_pseudogene EEF1DP4 1 OTTHUMG00000156600.1 pseudo_consens +55417 chr7 HAVANA gene 64888527 64890100 1062.0 - 0 ENSG00000189316.3 antisense AC073349.1 2 OTTHUMG00000156628.1 +55418 chr7 HAVANA gene 64870172 64930966 8652.0 + 0 ENSG00000198039.11 protein_coding ZNF273 1 OTTHUMG00000149837.3 +55419 chr7 HAVANA gene 64933273 64933616 344.0 + 0 ENSG00000223476.1 processed_pseudogene VN1R42P 2 OTTHUMG00000156629.1 +55420 chr7 HAVANA gene 64942143 64942926 784.0 - 0 ENSG00000270948.1 processed_pseudogene MTDHP1 1 OTTHUMG00000184712.1 pseudo_consens +55421 chr7 HAVANA gene 64971776 65006684 10691.0 - 0 ENSG00000152926.14 protein_coding ZNF117 2 OTTHUMG00000156631.15 overlapping_locus +55422 chr7 HAVANA gene 64990809 65006743 4574.0 - 0 ENSG00000213462.4 protein_coding ERV3-1 2 OTTHUMG00000165023.4 overlapping_locus +55423 chr7 ENSEMBL gene 65023204 65023310 107.0 - 0 ENSG00000201165.1 snRNA RNU6-1229P 3 +55424 chr7 HAVANA gene 65038372 65038565 194.0 + 0 ENSG00000239985.2 unprocessed_pseudogene AC073210.2 2 OTTHUMG00000156633.2 overlapping_locus +55425 chr7 ENSEMBL gene 65065999 65066132 134.0 + 0 ENSG00000207344.1 snoRNA SNORA22C 3 +55426 chr7 ENSEMBL gene 65070538 65070672 135.0 + 0 ENSG00000207062.1 snoRNA SNORA15B-1 3 +55427 chr7 HAVANA gene 65038354 65074713 3920.0 + 0 ENSG00000234585.6 transcribed_unprocessed_pseudogene CCT6P3 2 OTTHUMG00000156630.1 overlapping_locus +55428 chr7 HAVANA gene 65075023 65078780 232.0 + 0 ENSG00000227113.2 unprocessed_pseudogene AC073210.1 2 OTTHUMG00000156634.1 +55429 chr7 HAVANA gene 65084103 65100232 586.0 + 0 ENSG00000226002.1 unprocessed_pseudogene GTF2IP14 2 OTTHUMG00000156632.1 +55430 chr7 HAVANA gene 65141032 65234216 3905.0 + 0 ENSG00000164669.13 transcribed_unprocessed_pseudogene INTS4P1 1 OTTHUMG00000156510.5 pseudo_consens +55431 chr7 HAVANA gene 65235790 65236723 312.0 - 0 ENSG00000237026.1 processed_pseudogene AC104073.2 2 OTTHUMG00000156728.1 +55432 chr7 HAVANA gene 65247608 65247758 151.0 - 0 ENSG00000229064.1 processed_pseudogene AC104073.1 2 OTTHUMG00000156729.1 +55433 chr7 HAVANA gene 65290429 65292776 955.0 + 0 ENSG00000277544.1 unprocessed_pseudogene AC104073.3 2 OTTHUMG00000187683.2 overlapping_locus +55434 chr7 HAVANA gene 65269374 65306238 598.0 + 0 ENSG00000282381.1 lincRNA AC104073.4 2 OTTHUMG00000191393.1 overlapping_locus +55435 chr7 HAVANA gene 65335174 65335668 495.0 - 0 ENSG00000231556.1 processed_pseudogene RSL24D1P3 1 OTTHUMG00000156562.1 pseudo_consens +55436 chr7 HAVANA gene 65355934 65357176 1243.0 + 0 ENSG00000232906.1 processed_pseudogene AC092685.1 2 OTTHUMG00000156561.1 +55437 chr7 HAVANA gene 65373799 65401135 3512.0 + 0 ENSG00000146757.13 protein_coding ZNF92 1 OTTHUMG00000156557.2 +55438 chr7 HAVANA gene 65463071 65463438 164.0 + 0 ENSG00000238124.1 lincRNA AC114501.3 2 OTTHUMG00000156731.1 +55439 chr7 HAVANA gene 65508773 65508944 172.0 - 0 ENSG00000226767.1 processed_pseudogene AC114501.1 2 OTTHUMG00000156744.1 +55440 chr7 HAVANA gene 65525629 65554744 535.0 - 0 ENSG00000235421.1 unprocessed_pseudogene AC114501.2 2 OTTHUMG00000156560.2 +55441 chr7 HAVANA gene 65617082 65619153 428.0 + 0 ENSG00000230386.5 unprocessed_pseudogene AC104057.1 2 OTTHUMG00000156730.2 +55442 chr7 HAVANA gene 65647823 65718688 2019.0 + 0 ENSG00000273024.6 transcribed_unprocessed_pseudogene INTS4P2 1 OTTHUMG00000156558.7 pseudo_consens +55443 chr7 ENSEMBL gene 65755526 65755659 134.0 + 0 ENSG00000206634.1 snoRNA SNORA22 3 +55444 chr7 ENSEMBL gene 65760052 65760186 135.0 + 0 ENSG00000206785.1 snoRNA SNORA15B-2 3 +55445 chr7 HAVANA gene 65751142 65763354 1670.0 + 0 ENSG00000228409.6 transcribed_unprocessed_pseudogene CCT6P1 2 OTTHUMG00000156733.2 +55446 chr7 HAVANA gene 65764535 65768306 238.0 + 0 ENSG00000275833.1 unprocessed_pseudogene AC073107.2 2 OTTHUMG00000187684.1 +55447 chr7 HAVANA gene 65647010 65770810 1962.0 - 0 ENSG00000272693.4 transcribed_unprocessed_pseudogene AC073107.1 2 OTTHUMG00000191429.2 +55448 chr7 HAVANA gene 65773620 65802067 731.0 + 0 ENSG00000224316.1 unprocessed_pseudogene GTF2IP5 1 OTTHUMG00000156734.1 pseudo_consens +55449 chr7 ENSEMBL gene 65814672 65814775 104.0 + 0 ENSG00000200670.1 snRNA RNU6-912P 3 +55450 chr7 HAVANA gene 65840212 65840596 385.0 + 0 ENSG00000236529.1 processed_pseudogene AC093582.1 2 OTTHUMG00000156742.1 +55451 chr7 ENSEMBL gene 65859660 65859766 107.0 - 0 ENSG00000201560.1 snRNA RNU6-973P 3 +55452 chr7 HAVANA gene 65873166 65959563 6000.0 + 0 ENSG00000196715.6 protein_coding VKORC1L1 2 OTTHUMG00000129449.4 +55453 chr7 HAVANA gene 65960684 65982314 3992.0 - 0 ENSG00000169919.16 protein_coding GUSB 1 OTTHUMG00000023735.4 +55454 chr7 HAVANA gene 66004017 66004137 121.0 + 0 ENSG00000224365.1 processed_pseudogene AC073261.1 2 OTTHUMG00000156656.1 +55455 chr7 HAVANA gene 66025126 66031544 306.0 - 0 ENSG00000229886.1 processed_pseudogene AC068533.2 2 OTTHUMG00000156741.1 +55456 chr7 HAVANA gene 66070904 66071318 415.0 - 0 ENSG00000205596.4 processed_pseudogene AC068533.1 1 OTTHUMG00000156743.1 pseudo_consens +55457 chr7 HAVANA gene 66075798 66093558 3195.0 + 0 ENSG00000126522.16 protein_coding ASL 1 OTTHUMG00000022876.4 overlapping_locus +55458 chr7 HAVANA gene 66087761 66152277 922.0 + 0 ENSG00000249319.2 protein_coding AC068533.4 2 OTTHUMG00000160818.3 overlapping_locus +55459 chr7 HAVANA gene 66114604 66154568 3540.0 + 0 ENSG00000241258.6 protein_coding CRCP 1 OTTHUMG00000129519.3 overlapping_locus +55460 chr7 HAVANA gene 66119603 66165011 404.0 - 0 ENSG00000234185.2 antisense AC068533.3 2 OTTHUMG00000156655.2 +55461 chr7 ENSEMBL gene 66344303 66344414 112.0 + 0 ENSG00000252126.2 snRNA RNU6-313P 3 +55462 chr7 HAVANA gene 66407288 66409239 301.0 - 0 ENSG00000251451.1 transcribed_unprocessed_pseudogene GTF2IP9 2 OTTHUMG00000156592.1 overlapping_locus +55463 chr7 HAVANA gene 66205199 66420543 2871.0 + 0 ENSG00000169902.14 protein_coding TPST1 2 OTTHUMG00000023871.7 ncRNA_host +55464 chr7 HAVANA gene 66423405 66423893 489.0 - 0 ENSG00000231234.2 transcribed_processed_pseudogene SKP1P1 1 OTTHUMG00000156598.1 pseudo_consens,overlapping_locus +55465 chr7 HAVANA gene 66434634 66435154 521.0 - 0 ENSG00000236928.3 processed_pseudogene AC008267.4 1 OTTHUMG00000156597.1 pseudo_consens,overlapping_locus +55466 chr7 HAVANA gene 66427949 66453634 981.0 - 0 ENSG00000230189.7 transcribed_unprocessed_pseudogene AC008267.2 1 OTTHUMG00000192174.1 pseudo_consens,overlapping_locus +55467 chr7 HAVANA gene 66474556 66475749 1194.0 + 0 ENSG00000279785.1 TEC AC008267.7 2 OTTHUMG00000188119.1 +55468 chr7 HAVANA gene 66485095 66486532 139.0 - 0 ENSG00000244657.1 transcribed_unprocessed_pseudogene AC008267.6 2 OTTHUMG00000156594.1 overlapping_locus +55469 chr7 HAVANA gene 66480394 66490108 265.0 - 0 ENSG00000244510.2 transcribed_unprocessed_pseudogene AC008267.5 2 OTTHUMG00000156591.2 overlapping_locus +55470 chr7 HAVANA gene 66376044 66493566 11354.0 - 0 ENSG00000179406.7 processed_transcript LINC00174 2 OTTHUMG00000156595.2 overlapping_locus +55471 chr7 HAVANA gene 66493706 66495474 540.0 + 0 ENSG00000237310.1 lincRNA GS1-124K5.4 2 OTTHUMG00000156593.1 +55472 chr7 HAVANA gene 66505155 66506223 1069.0 - 0 ENSG00000179342.4 processed_pseudogene AC008267.1 1 OTTHUMG00000156757.1 pseudo_consens +55473 chr7 HAVANA gene 66511556 66545066 712.0 + 0 ENSG00000234500.1 unprocessed_pseudogene AC008267.3 2 OTTHUMG00000156756.1 +55474 chr7 HAVANA gene 66553805 66554199 395.0 - 0 ENSG00000275400.1 processed_pseudogene AC006001.4 1 OTTHUMG00000187685.1 pseudo_consens +55475 chr7 HAVANA gene 66556216 66557065 850.0 + 0 ENSG00000232491.1 processed_pseudogene SAPCD2P3 1 OTTHUMG00000156755.1 pseudo_consens +55476 chr7 HAVANA gene 66556889 66557362 474.0 - 0 ENSG00000177418.2 processed_pseudogene AC006001.1 2 OTTHUMG00000186628.1 overlapping_locus +55477 chr7 HAVANA gene 66526088 66592397 9983.0 - 0 ENSG00000229180.7 transcribed_unprocessed_pseudogene AC006001.3 2 OTTHUMG00000156758.3 +55478 chr7 HAVANA gene 66606738 66607107 370.0 - 0 ENSG00000225573.4 processed_pseudogene RPL35P5 1 OTTHUMG00000156759.1 pseudo_consens +55479 chr7 HAVANA gene 66628767 66649067 7565.0 + 0 ENSG00000243335.9 protein_coding KCTD7 1 OTTHUMG00000129543.7 overlapping_locus +55480 chr7 HAVANA gene 66654538 66669855 938.0 + 0 ENSG00000226824.6 sense_intronic AC006001.2 2 OTTHUMG00000156753.1 overlapping_locus +55481 chr7 HAVANA gene 66739829 66740385 557.0 - 0 ENSG00000272831.1 antisense AC027644.3 2 OTTHUMG00000186261.2 +55482 chr7 HAVANA gene 66748838 66749077 240.0 - 0 ENSG00000271064.1 processed_pseudogene AC027644.2 1 OTTHUMG00000184516.1 pseudo_consens +55483 chr7 HAVANA gene 66628958 66811189 4139.0 + 0 ENSG00000284461.2 protein_coding AC027644.4 2 OTTHUMG00000192208.3 overlapping_locus +55484 chr7 HAVANA gene 66682164 66811464 5508.0 + 0 ENSG00000154710.17 protein_coding RABGEF1 2 OTTHUMG00000129547.8 overlapping_locus +55485 chr7 HAVANA gene 66809993 66844882 3265.0 - 0 ENSG00000230583.7 transcribed_unprocessed_pseudogene GTF2IRD1P1 2 OTTHUMG00000156927.3 +55486 chr7 HAVANA gene 66848496 66858136 298.0 + 0 ENSG00000232546.1 unprocessed_pseudogene AC027644.1 2 OTTHUMG00000156907.1 +55487 chr7 HAVANA gene 66880708 66882981 351.0 + 0 ENSG00000230295.1 unprocessed_pseudogene GTF2IP23 2 OTTHUMG00000156905.1 +55488 chr7 ENSEMBL gene 66891188 66891291 104.0 + 0 ENSG00000212568.1 snRNA RNU6-1254P 3 +55489 chr7 HAVANA gene 66902857 66906297 3441.0 + 0 ENSG00000273142.1 lincRNA AC073335.2 2 OTTHUMG00000186265.1 +55490 chr7 HAVANA gene 66914581 66914943 363.0 + 0 ENSG00000179131.7 processed_pseudogene AC073335.1 1 OTTHUMG00000156904.2 pseudo_consens +55491 chr7 ENSEMBL gene 66915063 66915334 272.0 - 0 ENSG00000274135.1 misc_RNA RF00017 3 +55492 chr7 HAVANA gene 66921225 66958551 5086.0 + 0 ENSG00000106609.16 protein_coding TMEM248 2 OTTHUMG00000129553.6 +55493 chr7 ENSEMBL gene 66980120 66980410 291.0 + 0 ENSG00000275878.1 misc_RNA RN7SL43P 3 +55494 chr7 HAVANA gene 66987677 66995601 1732.0 - 0 ENSG00000126524.9 protein_coding SBDS 2 OTTHUMG00000023165.3 +55495 chr7 HAVANA gene 67089257 67089470 214.0 - 0 ENSG00000233383.1 processed_pseudogene AC073089.1 1 OTTHUMG00000156925.1 pseudo_consens +55496 chr7 ENSEMBL gene 67114322 67114397 76.0 - 0 ENSG00000266525.1 miRNA MIR4650-1 3 +55497 chr7 HAVANA gene 66995173 67239519 3890.0 + 0 ENSG00000198874.12 protein_coding TYW1 2 OTTHUMG00000129723.4 +55498 chr7 HAVANA gene 67279778 67286230 827.0 + 0 ENSG00000230358.3 unprocessed_pseudogene SPDYE21P 2 OTTHUMG00000156921.1 +55499 chr7 ENSEMBL gene 67297653 67297754 102.0 - 0 ENSG00000201565.1 misc_RNA RF00019 3 +55500 chr7 HAVANA gene 67295608 67302907 1060.0 - 0 ENSG00000067601.7 transcribed_unprocessed_pseudogene PMS2P4 2 OTTHUMG00000156923.1 +55501 chr7 HAVANA gene 67307605 67308356 378.0 - 0 ENSG00000228019.1 unprocessed_pseudogene AC006480.1 1 OTTHUMG00000156919.1 pseudo_consens +55502 chr7 HAVANA gene 67333047 67334383 1337.0 + 0 ENSG00000273448.1 lincRNA AC006480.2 2 OTTHUMG00000186266.1 overlapping_locus +55503 chr7 HAVANA gene 67302621 67362950 3192.0 + 0 ENSG00000106610.15 transcribed_unprocessed_pseudogene STAG3L4 2 OTTHUMG00000156920.3 +55504 chr7 HAVANA gene 67627831 67628019 189.0 + 0 ENSG00000226392.1 unprocessed_pseudogene MTATP6P21 2 OTTHUMG00000156572.1 +55505 chr7 HAVANA gene 67628022 67628349 328.0 + 0 ENSG00000237466.1 unprocessed_pseudogene MTCO3P41 2 OTTHUMG00000156573.1 +55506 chr7 HAVANA gene 67691058 67697029 575.0 - 0 ENSG00000233423.1 lincRNA AC005482.1 1 OTTHUMG00000156571.1 +55507 chr7 HAVANA gene 67769629 67770468 423.0 - 0 ENSG00000223948.1 processed_pseudogene AC092648.1 2 OTTHUMG00000156570.1 +55508 chr7 HAVANA gene 68020253 68032690 510.0 + 0 ENSG00000225209.1 lincRNA AC092637.1 1 OTTHUMG00000156569.1 +55509 chr7 HAVANA gene 68097737 68098250 261.0 + 0 ENSG00000232975.1 unprocessed_pseudogene MTCO1P57 2 OTTHUMG00000156581.1 overlapping_locus +55510 chr7 HAVANA gene 68091223 68119209 758.0 + 0 ENSG00000236531.2 lincRNA AC006013.1 2 OTTHUMG00000156583.2 overlapping_locus +55511 chr7 HAVANA gene 68241637 68242267 631.0 + 0 ENSG00000237754.1 processed_pseudogene AC093655.2 2 OTTHUMG00000156584.1 +55512 chr7 HAVANA gene 68266319 68266859 541.0 - 0 ENSG00000225959.1 unprocessed_pseudogene MTND4P3 2 OTTHUMG00000156580.2 overlapping_locus +55513 chr7 HAVANA gene 68150283 68288233 641.0 - 0 ENSG00000226829.1 lincRNA AC093655.1 2 OTTHUMG00000156582.2 overlapping_locus +55514 chr7 HAVANA gene 68640798 68641584 787.0 + 0 ENSG00000228429.1 processed_pseudogene AC004910.1 1 OTTHUMG00000156587.2 pseudo_consens +55515 chr7 ENSEMBL gene 68723911 68724048 138.0 - 0 ENSG00000222428.1 rRNA_pseudogene RNA5SP231 3 +55516 chr7 HAVANA gene 69040152 69046803 419.0 + 0 ENSG00000233689.1 lincRNA AC104688.1 1 OTTHUMG00000156611.1 +55517 chr7 ENSEMBL gene 69125270 69125376 107.0 + 0 ENSG00000200189.1 snRNA RNU6-832P 3 +55518 chr7 HAVANA gene 69187833 69189318 439.0 - 0 ENSG00000236839.1 lincRNA AC069280.1 2 OTTHUMG00000156608.1 +55519 chr7 HAVANA gene 69330698 69331378 681.0 - 0 ENSG00000230654.1 unprocessed_pseudogene MTCO2P25 2 OTTHUMG00000156610.1 overlapping_locus +55520 chr7 HAVANA gene 69331835 69333633 1799.0 - 0 ENSG00000229031.1 unprocessed_pseudogene MTCO1P25 2 OTTHUMG00000156609.1 overlapping_locus +55521 chr7 ENSEMBL gene 69401202 69401303 102.0 - 0 ENSG00000252423.1 snRNA RNU6-229P 3 +55522 chr7 HAVANA gene 69224696 69430923 1530.0 - 0 ENSG00000225718.1 lincRNA AC092100.1 1 OTTHUMG00000156607.2 ncRNA_host,overlapping_locus +55523 chr7 ENSEMBL gene 69507510 69507622 113.0 - 0 ENSG00000200857.1 misc_RNA RF00019 3 +55524 chr7 HAVANA gene 69595958 69597448 691.0 - 0 ENSG00000234215.2 lincRNA AC006012.1 2 OTTHUMG00000156644.2 +55525 chr7 HAVANA gene 69598296 70793495 24197.0 + 0 ENSG00000158321.16 protein_coding AUTS2 2 OTTHUMG00000023865.10 +55526 chr7 HAVANA gene 70837738 70838013 276.0 + 0 ENSG00000236978.1 processed_pseudogene AC073873.1 2 OTTHUMG00000156645.2 +55527 chr7 ENSEMBL gene 71307674 71307768 95.0 + 0 ENSG00000283278.1 miRNA MIR3914-2 3 +55528 chr7 ENSEMBL gene 71307672 71307770 99.0 - 0 ENSG00000265878.2 miRNA MIR3914-1 3 +55529 chr7 ENSEMBL gene 71685452 71685747 296.0 - 0 ENSG00000199940.1 misc_RNA RN7SKP75 3 +55530 chr7 HAVANA gene 71132169 71713600 4870.0 + 0 ENSG00000185274.11 protein_coding GALNT17 2 OTTHUMG00000129783.4 ncRNA_host +55531 chr7 ENSEMBL gene 71913738 71913856 119.0 - 0 ENSG00000201014.1 rRNA_pseudogene RNA5SP232 3 +55532 chr7 HAVANA gene 71942259 71942468 210.0 + 0 ENSG00000235581.1 processed_pseudogene AC005011.1 1 OTTHUMG00000156670.2 pseudo_consens +55533 chr7 HAVANA gene 72103181 72104209 296.0 + 0 ENSG00000228769.1 unprocessed_pseudogene ABCF2P2 2 OTTHUMG00000156669.1 +55534 chr7 HAVANA gene 71779491 72447151 10032.0 - 0 ENSG00000183166.10 protein_coding CALN1 2 OTTHUMG00000023787.9 +55535 chr7 ENSEMBL gene 72697903 72697978 76.0 + 0 ENSG00000264494.1 miRNA MIR4650-2 3 +55536 chr7 HAVANA gene 72722885 72723089 205.0 + 0 ENSG00000270694.1 processed_pseudogene AC211469.2 1 OTTHUMG00000184450.2 pseudo_consens +55537 chr7 HAVANA gene 72768798 72769191 394.0 + 0 ENSG00000270555.1 processed_pseudogene AC211469.1 1 OTTHUMG00000184448.2 pseudo_consens +55538 chr7 ENSEMBL gene 72822894 72823171 278.0 - 0 ENSG00000266569.2 misc_RNA RN7SL377P 3 +55539 chr7 HAVANA gene 72558744 72828198 3258.0 - 0 ENSG00000277149.4 protein_coding TYW1B 2 OTTHUMG00000157067.5 ncRNA_host +55540 chr7 HAVANA gene 72829425 72836701 1239.0 + 0 ENSG00000225648.5 transcribed_unprocessed_pseudogene SBDSP1 2 OTTHUMG00000157063.3 +55541 chr7 ENSEMBL gene 72841437 72841727 291.0 - 0 ENSG00000274656.1 misc_RNA RN7SL625P 3 +55542 chr7 HAVANA gene 72862757 72870510 1262.0 - 0 ENSG00000179994.10 transcribed_unprocessed_pseudogene SPDYE7P 2 OTTHUMG00000150526.1 +55543 chr7 HAVANA gene 72924418 72925125 708.0 - 0 ENSG00000272843.1 antisense AC211476.2 2 OTTHUMG00000186270.1 +55544 chr7 HAVANA gene 72879365 72951440 9822.0 + 0 ENSG00000196313.11 protein_coding POM121 2 OTTHUMG00000023527.5 +55545 chr7 HAVANA gene 72947581 72954790 2576.0 - 0 ENSG00000106133.17 transcribed_unprocessed_pseudogene NSUN5P2 2 OTTHUMG00000129829.6 +55546 chr7 HAVANA gene 72954797 72957106 2085.0 + 0 ENSG00000285886.1 lincRNA AC211476.6 2 OTTHUMG00000192847.1 +55547 chr7 HAVANA gene 72959485 72969466 1471.0 - 0 ENSG00000155428.12 protein_coding TRIM74 2 OTTHUMG00000129851.1 +55548 chr7 HAVANA gene 72969814 72971727 468.0 + 0 ENSG00000205584.6 unprocessed_pseudogene AC211476.1 2 OTTHUMG00000150519.1 +55549 chr7 ENSEMBL gene 72983360 72983461 102.0 - 0 ENSG00000276178.1 misc_RNA RF00019 3 +55550 chr7 HAVANA gene 72969696 73005922 3644.0 - 0 ENSG00000174353.17 transcribed_unprocessed_pseudogene STAG3L3 2 OTTHUMG00000157064.4 +55551 chr7 ENSEMBL gene 73011144 73011245 102.0 + 0 ENSG00000201282.1 misc_RNA RF00019 3 +55552 chr7 HAVANA gene 73005541 73021103 1336.0 + 0 ENSG00000229018.5 unprocessed_pseudogene PMS2P7 2 OTTHUMG00000157065.3 +55553 chr7 HAVANA gene 73020338 73029766 2281.0 - 0 ENSG00000273520.4 transcribed_unprocessed_pseudogene SPDYE8P 2 OTTHUMG00000188238.2 +55554 chr7 ENSEMBL gene 73039085 73039186 102.0 + 0 ENSG00000273927.1 misc_RNA RF00019 3 +55555 chr7 HAVANA gene 73037371 73049246 715.0 + 0 ENSG00000273897.1 unprocessed_pseudogene AC211476.3 2 OTTHUMG00000188239.1 overlapping_locus +55556 chr7 HAVANA gene 73048055 73057911 2984.0 - 0 ENSG00000275976.4 transcribed_unprocessed_pseudogene SPDYE11 2 OTTHUMG00000188240.2 +55557 chr7 ENSEMBL gene 73067231 73067332 102.0 + 0 ENSG00000274984.1 misc_RNA RF00019 3 +55558 chr7 HAVANA gene 73039696 73069506 858.0 + 0 ENSG00000285702.1 processed_transcript AC211476.5 2 OTTHUMG00000193351.1 ncRNA_host,overlapping_locus +55559 chr7 HAVANA gene 73065529 73077353 699.0 + 0 ENSG00000277125.1 unprocessed_pseudogene AC211476.4 2 OTTHUMG00000188241.2 overlapping_locus +55560 chr7 HAVANA gene 73076165 73086038 2948.0 - 0 ENSG00000262461.5 transcribed_unprocessed_pseudogene SPDYE9P 2 OTTHUMG00000150524.3 +55561 chr7 ENSEMBL gene 73095357 73095458 102.0 + 0 ENSG00000199913.1 misc_RNA RF00019 3 +55562 chr7 HAVANA gene 73093657 73105389 710.0 + 0 ENSG00000174384.9 unprocessed_pseudogene PMS2P6 2 OTTHUMG00000157066.2 +55563 chr7 HAVANA gene 73104201 73111140 2240.0 - 0 ENSG00000274570.4 transcribed_unprocessed_pseudogene SPDYE10P 2 OTTHUMG00000150525.3 +55564 chr7 HAVANA gene 73187969 73188736 768.0 - 0 ENSG00000233523.1 processed_pseudogene PHBP5 1 OTTHUMG00000156703.1 pseudo_consens +55565 chr7 HAVANA gene 73154938 73207283 3609.0 + 0 ENSG00000233369.7 transcribed_processed_pseudogene GTF2IP4 2 OTTHUMG00000156702.3 +55566 chr7 HAVANA gene 73220624 73235945 1902.0 + 0 ENSG00000182487.12 transcribed_unprocessed_pseudogene NCF1B 2 OTTHUMG00000156804.1 +55567 chr7 HAVANA gene 73242751 73280119 3528.0 - 0 ENSG00000214544.7 transcribed_unprocessed_pseudogene GTF2IRD2P1 1 OTTHUMG00000156803.4 pseudo_consens +55568 chr7 HAVANA gene 73293497 73301161 2487.0 + 0 ENSG00000205578.5 unprocessed_pseudogene POM121B 2 OTTHUMG00000156802.2 +55569 chr7 HAVANA gene 73302517 73308867 3414.0 - 0 ENSG00000130305.16 protein_coding NSUN5 2 OTTHUMG00000129869.3 +55570 chr7 HAVANA gene 73314107 73315213 1107.0 + 0 ENSG00000225005.1 processed_pseudogene AC211485.1 1 OTTHUMG00000156801.2 pseudo_consens +55571 chr7 HAVANA gene 73312539 73328082 2490.0 - 0 ENSG00000146755.10 protein_coding TRIM50 2 OTTHUMG00000156805.2 +55572 chr7 ENSEMBL gene 73339094 73339200 107.0 - 0 ENSG00000206709.1 snRNA RNU6-1080P 3 +55573 chr7 HAVANA gene 73328164 73358637 2469.0 + 0 ENSG00000077800.12 protein_coding FKBP6 1 OTTHUMG00000150520.12 +55574 chr7 ENSEMBL gene 73403788 73403889 102.0 - 0 ENSG00000202035.1 misc_RNA RF00019 3 +55575 chr7 HAVANA gene 73433783 73436120 2338.0 + 0 ENSG00000188763.4 protein_coding FZD9 2 OTTHUMG00000023051.2 +55576 chr7 ENSEMBL gene 73507208 73507274 67.0 + 0 ENSG00000252713.1 snRNA RNU6-1198P 3 +55577 chr7 HAVANA gene 73440398 73522278 7053.0 - 0 ENSG00000009954.10 protein_coding BAZ1B 2 OTTHUMG00000023847.5 +55578 chr7 HAVANA gene 73536356 73558002 3542.0 - 0 ENSG00000106635.7 protein_coding BCL7B 2 OTTHUMG00000023412.4 +55579 chr7 HAVANA gene 73567533 73578791 6466.0 - 0 ENSG00000106638.16 protein_coding TBL2 2 OTTHUMG00000023427.8 +55580 chr7 HAVANA gene 73609262 73611502 2241.0 - 0 ENSG00000274080.1 sense_intronic AC005089.1 2 OTTHUMG00000188576.1 overlapping_locus +55581 chr7 HAVANA gene 73593194 73624543 4815.0 - 0 ENSG00000009950.15 protein_coding MLXIPL 1 OTTHUMG00000129995.7 overlapping_locus +55582 chr7 HAVANA gene 73667825 73672112 1626.0 + 0 ENSG00000176428.5 protein_coding VPS37D 2 OTTHUMG00000157227.1 +55583 chr7 HAVANA gene 73680969 73683453 2485.0 - 0 ENSG00000176410.7 protein_coding DNAJC30 2 OTTHUMG00000023290.3 +55584 chr7 HAVANA gene 73683025 73705161 7944.0 + 0 ENSG00000071462.11 protein_coding BUD23 2 OTTHUMG00000023306.4 +55585 chr7 ENSEMBL gene 73711317 73711397 81.0 + 0 ENSG00000265724.1 miRNA MIR4284 3 +55586 chr7 HAVANA gene 73699206 73719672 3693.0 - 0 ENSG00000106089.11 protein_coding STX1A 1 OTTHUMG00000137422.3 +55587 chr7 ENSEMBL gene 73732569 73732868 300.0 - 0 ENSG00000241709.3 misc_RNA RN7SL265P 3 +55588 chr7 HAVANA gene 73735038 73736158 662.0 + 0 ENSG00000225969.2 transcribed_unitary_pseudogene ABHD11-AS1 2 OTTHUMG00000153263.2 +55589 chr7 HAVANA gene 73736094 73738867 2289.0 - 0 ENSG00000106077.18 protein_coding ABHD11 1 OTTHUMG00000130029.4 +55590 chr7 HAVANA gene 73768997 73770270 1274.0 - 0 ENSG00000165215.6 protein_coding CLDN3 2 OTTHUMG00000023424.2 retrogene +55591 chr7 HAVANA gene 73799542 73832693 4702.0 + 0 ENSG00000189143.9 protein_coding CLDN4 1 OTTHUMG00000023425.4 retrogene +55592 chr7 HAVANA gene 73834590 73842535 1469.0 - 0 ENSG00000165171.10 protein_coding METTL27 2 OTTHUMG00000130033.2 +55593 chr7 HAVANA gene 73861159 73865893 977.0 + 0 ENSG00000175877.3 protein_coding TMEM270 2 OTTHUMG00000157243.1 +55594 chr7 HAVANA gene 73985992 73988767 2776.0 + 0 ENSG00000261467.2 lincRNA AC099398.1 2 OTTHUMG00000173182.1 +55595 chr7 HAVANA gene 74059576 74062284 532.0 - 0 ENSG00000232415.1 antisense ELN-AS1 2 OTTHUMG00000157272.1 +55596 chr7 HAVANA gene 74027789 74069907 6542.0 + 0 ENSG00000049540.16 protein_coding ELN 2 OTTHUMG00000150229.13 +55597 chr7 HAVANA gene 74082933 74122525 6902.0 + 0 ENSG00000106683.14 protein_coding LIMK1 1 OTTHUMG00000023448.5 +55598 chr7 ENSEMBL gene 74191198 74191294 97.0 + 0 ENSG00000207741.1 miRNA MIR590 3 +55599 chr7 HAVANA gene 74174245 74197101 3191.0 + 0 ENSG00000106682.14 protein_coding EIF4H 2 OTTHUMG00000023025.4 ncRNA_host +55600 chr7 HAVANA gene 74199652 74229834 4545.0 + 0 ENSG00000086730.16 protein_coding LAT2 2 OTTHUMG00000130151.10 +55601 chr7 HAVANA gene 74231499 74254458 2211.0 - 0 ENSG00000049541.10 protein_coding RFC2 2 OTTHUMG00000023239.7 +55602 chr7 HAVANA gene 74289475 74405943 7315.0 + 0 ENSG00000106665.15 protein_coding CLIP2 1 OTTHUMG00000022980.4 +55603 chr7 ENSEMBL gene 74487428 74487540 113.0 - 0 ENSG00000238391.1 rRNA_pseudogene RNA5SP233 3 +55604 chr7 HAVANA gene 74453790 74602604 6498.0 + 0 ENSG00000006704.10 protein_coding GTF2IRD1 1 OTTHUMG00000023782.4 +55605 chr7 HAVANA gene 74606913 74607299 387.0 + 0 ENSG00000273069.1 lincRNA AC211433.2 2 OTTHUMG00000186274.1 +55606 chr7 HAVANA gene 74633510 74633884 375.0 - 0 ENSG00000279005.1 TEC AC211433.3 2 OTTHUMG00000173280.2 +55607 chr7 HAVANA gene 74688939 74729001 2847.0 - 0 ENSG00000232729.7 processed_transcript AC211433.1 2 OTTHUMG00000156239.5 +55608 chr7 HAVANA gene 74741457 74742121 665.0 - 0 ENSG00000262648.1 processed_pseudogene PHBP15 1 OTTHUMG00000188290.1 pseudo_consens +55609 chr7 HAVANA gene 74657667 74760692 10438.0 + 0 ENSG00000263001.5 protein_coding GTF2I 2 OTTHUMG00000156237.6 +55610 chr7 HAVANA gene 74773962 74789315 3462.0 + 0 ENSG00000158517.13 protein_coding NCF1 2 OTTHUMG00000149965.12 +55611 chr7 HAVANA gene 74796144 74851551 7549.0 - 0 ENSG00000196275.13 protein_coding GTF2IRD2 2 OTTHUMG00000181527.3 +55612 chr7 HAVANA gene 74882163 74890610 2694.0 - 0 ENSG00000277072.4 transcribed_unprocessed_pseudogene STAG3L2 2 OTTHUMG00000156216.5 +55613 chr7 ENSEMBL gene 74895816 74895917 102.0 + 0 ENSG00000239069.1 misc_RNA RF00019 3 +55614 chr7 HAVANA gene 74894116 74897835 516.0 + 0 ENSG00000123965.13 unprocessed_pseudogene PMS2P5 2 OTTHUMG00000156014.4 +55615 chr7 HAVANA gene 74906673 74913256 771.0 - 0 ENSG00000184616.8 unprocessed_pseudogene SPDYE12P 2 OTTHUMG00000156994.3 +55616 chr7 HAVANA gene 74964818 75024798 1363.0 + 0 ENSG00000274070.1 protein_coding CASTOR2 2 OTTHUMG00000181541.2 overlapping_locus +55617 chr7 ENSEMBL gene 75057877 75058188 312.0 + 0 ENSG00000277127.1 misc_RNA RF00017 3 +55618 chr7 HAVANA gene 75027122 75074228 4196.0 - 0 ENSG00000274523.4 protein_coding RCC1L 2 OTTHUMG00000130373.5 +55619 chr7 HAVANA gene 75092573 75149817 5672.0 + 0 ENSG00000174428.16 protein_coding GTF2IRD2B 2 OTTHUMG00000181534.2 +55620 chr7 HAVANA gene 75156639 75172044 1427.0 - 0 ENSG00000165178.9 unprocessed_pseudogene NCF1C 2 OTTHUMG00000149964.4 +55621 chr7 HAVANA gene 75203926 75204711 786.0 + 0 ENSG00000276592.1 processed_pseudogene PHBP6 1 OTTHUMG00000188296.1 pseudo_consens +55622 chr7 HAVANA gene 75232928 75233924 280.0 + 0 ENSG00000263081.1 antisense AC211486.2 2 OTTHUMG00000162597.2 overlapping_locus +55623 chr7 HAVANA gene 75225433 75234310 775.0 + 0 ENSG00000277675.1 antisense AC211486.5 2 OTTHUMG00000165163.2 overlapping_locus +55624 chr7 HAVANA gene 75237293 75237405 113.0 - 0 ENSG00000275121.1 processed_pseudogene AC211486.4 2 OTTHUMG00000182945.1 overlapping_locus +55625 chr7 HAVANA gene 75185385 75237696 7453.0 - 0 ENSG00000277053.4 transcribed_unprocessed_pseudogene GTF2IP1 2 OTTHUMG00000181536.2 overlapping_locus +55626 chr7 HAVANA gene 75281267 75287118 798.0 + 0 ENSG00000274959.1 unprocessed_pseudogene SPDYE13P 2 OTTHUMG00000182946.2 +55627 chr7 ENSEMBL gene 75297990 75298091 102.0 - 0 ENSG00000267828.1 misc_RNA RF00019 3 +55628 chr7 HAVANA gene 75288120 75299795 612.0 - 0 ENSG00000276840.1 unprocessed_pseudogene PMS2P10 2 OTTHUMG00000182947.2 +55629 chr7 HAVANA gene 75309144 75315046 822.0 + 0 ENSG00000278807.1 unprocessed_pseudogene SPDYE14P 2 OTTHUMG00000182948.2 +55630 chr7 ENSEMBL gene 75325959 75326060 102.0 - 0 ENSG00000202021.1 misc_RNA RF00019 3 +55631 chr7 HAVANA gene 75316048 75327765 621.0 - 0 ENSG00000273598.1 unprocessed_pseudogene AC211486.3 2 OTTHUMG00000182949.2 +55632 chr7 HAVANA gene 75337162 75343013 909.0 + 0 ENSG00000278080.1 unprocessed_pseudogene SPDYE15P 2 OTTHUMG00000182950.1 +55633 chr7 ENSEMBL gene 75353885 75353986 102.0 - 0 ENSG00000199870.1 misc_RNA RF00019 3 +55634 chr7 HAVANA gene 75344015 75359550 1128.0 - 0 ENSG00000278416.1 unprocessed_pseudogene PMS2P2 2 OTTHUMG00000182951.2 +55635 chr7 ENSEMBL gene 75381638 75381739 102.0 + 0 ENSG00000275930.1 misc_RNA RF00019 3 +55636 chr7 HAVANA gene 75359194 75395383 2094.0 + 0 ENSG00000205583.13 transcribed_unprocessed_pseudogene STAG3L1 2 OTTHUMG00000155940.8 overlapping_locus +55637 chr7 HAVANA gene 75391955 75395434 1122.0 - 0 ENSG00000146722.11 transcribed_unprocessed_pseudogene AC211486.1 2 OTTHUMG00000150518.2 +55638 chr7 HAVANA gene 75395063 75410996 5544.0 + 0 ENSG00000178809.11 protein_coding TRIM73 2 OTTHUMG00000156075.7 overlapping_locus +55639 chr7 HAVANA gene 75410322 75416787 4822.0 + 0 ENSG00000223705.9 transcribed_unprocessed_pseudogene NSUN5P1 2 OTTHUMG00000156108.10 overlapping_locus +55640 chr7 HAVANA gene 75474707 75486108 523.0 - 0 ENSG00000242073.2 transcribed_unprocessed_pseudogene AC211429.1 2 OTTHUMG00000156219.3 overlapping_locus +55641 chr7 HAVANA gene 75416787 75486271 8767.0 - 0 ENSG00000272391.5 protein_coding POM121C 2 OTTHUMG00000156238.10 overlapping_locus +55642 chr7 HAVANA gene 75493625 75504304 3325.0 + 0 ENSG00000170092.14 protein_coding SPDYE5 2 OTTHUMG00000156138.6 +55643 chr7 ENSEMBL gene 75513025 75513126 102.0 - 0 ENSG00000200874.1 misc_RNA RF00019 3 +55644 chr7 HAVANA gene 75502930 75528148 1727.0 - 0 ENSG00000127957.17 transcribed_unprocessed_pseudogene PMS2P3 2 OTTHUMG00000156049.45 +55645 chr7 HAVANA gene 75625089 75626970 1882.0 - 0 ENSG00000279996.1 TEC AC004491.1 2 OTTHUMG00000188597.1 +55646 chr7 HAVANA gene 75533300 75738962 8953.0 - 0 ENSG00000127946.16 protein_coding HIP1 1 OTTHUMG00000156050.5 +55647 chr7 HAVANA gene 75769533 75789896 706.0 - 0 ENSG00000006606.8 protein_coding CCL26 2 OTTHUMG00000130403.2 +55648 chr7 HAVANA gene 75811665 75823356 617.0 - 0 ENSG00000106178.6 protein_coding CCL24 2 OTTHUMG00000156635.1 +55649 chr7 HAVANA gene 75835663 75836141 479.0 + 0 ENSG00000219039.2 processed_pseudogene AC005102.1 1 OTTHUMG00000156319.1 pseudo_consens +55650 chr7 HAVANA gene 75842602 75888926 2441.0 + 0 ENSG00000005486.16 protein_coding RHBDD2 1 OTTHUMG00000156435.4 +55651 chr7 ENSEMBL gene 75915197 75915269 73.0 + 0 ENSG00000284334.1 miRNA MIR4651 3 +55652 chr7 HAVANA gene 75922755 75923443 689.0 + 0 ENSG00000235090.1 processed_pseudogene RPL7L1P3 1 OTTHUMG00000156434.1 pseudo_consens,overlapping_locus +55653 chr7 ENSEMBL gene 75943782 75943916 135.0 + 0 ENSG00000201643.1 snoRNA SNORA14A 3 +55654 chr7 HAVANA gene 75899200 75986855 6112.0 + 0 ENSG00000127948.15 protein_coding POR 2 OTTHUMG00000130413.33 ncRNA_host,overlapping_locus +55655 chr7 HAVANA gene 75986837 75994659 1997.0 - 0 ENSG00000189077.10 protein_coding TMEM120A 2 OTTHUMG00000156620.8 +55656 chr7 HAVANA gene 76043977 76045963 1987.0 - 0 ENSG00000280388.1 TEC AC006330.1 2 OTTHUMG00000188599.1 +55657 chr7 HAVANA gene 75996338 76048004 2028.0 - 0 ENSG00000127952.16 protein_coding STYXL1 1 OTTHUMG00000130459.4 +55658 chr7 HAVANA gene 76048051 76067508 3641.0 + 0 ENSG00000146701.11 protein_coding MDH2 1 OTTHUMG00000023827.6 +55659 chr7 HAVANA gene 76071469 76074963 3495.0 - 0 ENSG00000230882.1 processed_pseudogene AC005077.4 2 OTTHUMG00000156621.2 +55660 chr7 ENSEMBL gene 76087444 76087547 104.0 + 0 ENSG00000251798.1 snRNA RNU6-863P 3 +55661 chr7 HAVANA gene 76090431 76108779 2574.0 - 0 ENSG00000227038.3 transcribed_unprocessed_pseudogene GTF2IP7 2 OTTHUMG00000156626.2 overlapping_locus +55662 chr7 HAVANA gene 76113026 76113400 375.0 - 0 ENSG00000213549.3 processed_pseudogene AC005077.1 1 OTTHUMG00000156623.1 pseudo_consens +55663 chr7 HAVANA gene 76108434 76132187 690.0 - 0 ENSG00000224273.2 transcribed_unprocessed_pseudogene AC005077.2 1 OTTHUMG00000156622.2 pseudo_consens,overlapping_locus +55664 chr7 HAVANA gene 76173733 76177205 370.0 + 0 ENSG00000228829.1 transcribed_unprocessed_pseudogene AC005077.3 2 OTTHUMG00000156436.3 +55665 chr7 HAVANA gene 76201900 76287288 6873.0 + 0 ENSG00000177679.15 protein_coding SRRM3 2 OTTHUMG00000130489.5 +55666 chr7 HAVANA gene 76302544 76304295 1634.0 + 0 ENSG00000106211.8 protein_coding HSPB1 2 OTTHUMG00000023228.3 +55667 chr7 HAVANA gene 76326794 76359031 3750.0 - 0 ENSG00000170027.6 protein_coding YWHAG 2 OTTHUMG00000022862.3 retrogene +55668 chr7 HAVANA gene 76361768 76362113 346.0 + 0 ENSG00000213548.3 processed_pseudogene PPIAP81 1 OTTHUMG00000155726.1 pseudo_consens +55669 chr7 HAVANA gene 76389334 76409695 2819.0 - 0 ENSG00000146700.8 protein_coding SSC4D 2 OTTHUMG00000022864.7 +55670 chr7 HAVANA gene 76397518 76442071 2716.0 + 0 ENSG00000188372.14 protein_coding ZP3 2 OTTHUMG00000130575.3 +55671 chr7 HAVANA gene 76470162 76471058 897.0 - 0 ENSG00000233980.1 processed_pseudogene FDPSP2 1 OTTHUMG00000155850.1 pseudo_consens +55672 chr7 HAVANA gene 76474587 76478856 453.0 - 0 ENSG00000250614.1 antisense AC005522.1 2 OTTHUMG00000022872.7 +55673 chr7 HAVANA gene 76461676 76505995 5042.0 + 0 ENSG00000091073.19 protein_coding DTX2 1 OTTHUMG00000162594.3 +55674 chr7 HAVANA gene 76510428 76516521 2660.0 + 0 ENSG00000243566.6 protein_coding UPK3B 2 OTTHUMG00000149929.3 +55675 chr7 HAVANA gene 76521611 76522074 203.0 + 0 ENSG00000250778.1 unprocessed_pseudogene AC004980.4 2 OTTHUMG00000155723.2 +55676 chr7 ENSEMBL gene 76523605 76523706 102.0 + 0 ENSG00000238560.1 misc_RNA RF00019 3 +55677 chr7 HAVANA gene 76524515 76532692 365.0 + 0 ENSG00000230305.2 unprocessed_pseudogene AC004980.3 2 OTTHUMG00000155727.2 +55678 chr7 HAVANA gene 76531319 76541459 3611.0 - 0 ENSG00000185040.13 protein_coding SPDYE16 2 OTTHUMG00000155814.3 +55679 chr7 HAVANA gene 76609986 76627261 1861.0 - 0 ENSG00000146707.14 protein_coding POMZP3 2 OTTHUMG00000023514.22 +55680 chr7 HAVANA gene 76549360 76627982 3110.0 + 0 ENSG00000205485.13 transcribed_unprocessed_pseudogene AC004980.1 2 OTTHUMG00000155724.2 +55681 chr7 HAVANA gene 76650401 76650897 497.0 - 0 ENSG00000214243.3 processed_pseudogene AC004980.2 2 OTTHUMG00000155815.1 +55682 chr7 HAVANA gene 76818377 76903041 1155.0 - 0 ENSG00000285666.1 lincRNA AC006972.1 2 OTTHUMG00000193265.1 +55683 chr7 HAVANA gene 76902491 76919191 971.0 + 0 ENSG00000231183.3 processed_transcript AC007003.1 2 OTTHUMG00000155614.2 +55684 chr7 HAVANA gene 76968346 76968518 173.0 + 0 ENSG00000236280.1 processed_pseudogene AC114737.2 2 OTTHUMG00000156642.1 +55685 chr7 HAVANA gene 76968197 76969250 1054.0 - 0 ENSG00000231087.2 processed_pseudogene FDPSP7 1 OTTHUMG00000155799.1 pseudo_consens +55686 chr7 HAVANA gene 76972679 76976961 453.0 - 0 ENSG00000225703.1 lincRNA AC114737.1 2 OTTHUMG00000155798.1 +55687 chr7 HAVANA gene 76960571 76978658 570.0 + 0 ENSG00000283398.1 processed_transcript AC114737.3 2 OTTHUMG00000155661.3 overlapping_locus +55688 chr7 HAVANA gene 76978617 77004308 1633.0 + 0 ENSG00000186704.9 transcribed_unprocessed_pseudogene DTX2P1 2 OTTHUMG00000191765.1 overlapping_locus +55689 chr7 HAVANA gene 77004662 77005774 509.0 + 0 ENSG00000242435.1 transcribed_unprocessed_pseudogene UPK3BP1 2 OTTHUMG00000155728.1 overlapping_locus +55690 chr7 ENSEMBL gene 77013583 77013684 102.0 + 0 ENSG00000201885.1 misc_RNA RF00019 3 +55691 chr7 HAVANA gene 77011551 77015853 574.0 + 0 ENSG00000241350.1 transcribed_unprocessed_pseudogene PMS2P11 2 OTTHUMG00000155730.1 overlapping_locus +55692 chr7 HAVANA gene 77024691 77030572 783.0 - 0 ENSG00000186645.7 unprocessed_pseudogene SPDYE17 1 OTTHUMG00000155797.1 pseudo_consens +55693 chr7 ENSEMBL gene 77041647 77041748 102.0 + 0 ENSG00000201959.1 misc_RNA RF00019 3 +55694 chr7 HAVANA gene 76959835 77043775 5053.0 + 0 ENSG00000265479.6 processed_transcript DTX2P1-UPK3BP1-PMS2P11 2 OTTHUMG00000179528.3 ncRNA_host,overlapping_locus +55695 chr7 HAVANA gene 77039944 77043776 515.0 + 0 ENSG00000233448.2 transcribed_unprocessed_pseudogene PMS2P9 2 OTTHUMG00000155739.1 overlapping_locus +55696 chr7 HAVANA gene 77052785 77060512 1050.0 - 0 ENSG00000205482.9 unprocessed_pseudogene SPDYE18 2 OTTHUMG00000155796.2 +55697 chr7 HAVANA gene 77071751 77072237 487.0 - 0 ENSG00000225726.1 processed_pseudogene AC007000.2 1 OTTHUMG00000155783.1 pseudo_consens +55698 chr7 HAVANA gene 77115399 77116192 794.0 - 0 ENSG00000213542.3 processed_pseudogene AC007000.1 1 OTTHUMG00000157250.1 pseudo_consens,overlapping_locus +55699 chr7 HAVANA gene 77083787 77122116 1284.0 - 0 ENSG00000214439.4 transcribed_unprocessed_pseudogene FAM185BP 1 OTTHUMG00000154141.2 pseudo_consens,overlapping_locus +55700 chr7 HAVANA gene 77043721 77198626 617.0 + 0 ENSG00000259628.1 processed_transcript AC007000.3 2 OTTHUMG00000186397.1 overlapping_locus +55701 chr7 HAVANA gene 77193371 77199848 4604.0 - 0 ENSG00000127951.6 protein_coding FGL2 2 OTTHUMG00000130681.2 retrogene +55702 chr7 HAVANA gene 77246340 77258123 570.0 - 0 ENSG00000250990.1 antisense AC098851.1 2 OTTHUMG00000155740.16 +55703 chr7 HAVANA gene 77122434 77329533 4457.0 + 0 ENSG00000135205.14 protein_coding CCDC146 2 OTTHUMG00000162595.2 overlapping_locus +55704 chr7 HAVANA gene 77310751 77416400 9001.0 - 0 ENSG00000186088.15 protein_coding GSAP 2 OTTHUMG00000150504.6 +55705 chr7 HAVANA gene 77416673 77425443 733.0 + 0 ENSG00000273341.1 lincRNA AC004921.1 2 OTTHUMG00000186279.1 +55706 chr7 HAVANA gene 77461458 77462139 682.0 + 0 ENSG00000237620.1 processed_pseudogene GCNT1P5 2 OTTHUMG00000155782.1 +55707 chr7 HAVANA gene 77537275 77640071 5547.0 + 0 ENSG00000127947.15 protein_coding PTPN12 1 OTTHUMG00000023501.9 +55708 chr7 HAVANA gene 77657660 77696265 3100.0 - 0 ENSG00000214293.8 lincRNA APTR 1 OTTHUMG00000162596.1 +55709 chr7 HAVANA gene 77696443 77783022 7206.0 + 0 ENSG00000187257.15 protein_coding RSBN1L 1 OTTHUMG00000155517.7 +55710 chr7 HAVANA gene 77793728 77798580 1023.0 - 0 ENSG00000135211.5 protein_coding TMEM60 2 OTTHUMG00000130689.2 +55711 chr7 ENSEMBL gene 77895880 77895992 113.0 + 0 ENSG00000222432.1 misc_RNA RF00019 3 +55712 chr7 HAVANA gene 77798792 77957503 8646.0 + 0 ENSG00000006576.16 protein_coding PHTF2 2 OTTHUMG00000155557.3 ncRNA_host +55713 chr7 HAVANA gene 77990384 77995171 2298.0 + 0 ENSG00000232756.1 antisense AC004990.1 1 OTTHUMG00000156495.1 +55714 chr7 HAVANA gene 78134079 78134851 773.0 + 0 ENSG00000281008.1 TEC AC004808.2 2 OTTHUMG00000189690.1 +55715 chr7 HAVANA gene 78170195 78170915 721.0 + 0 ENSG00000280958.1 TEC AC004808.1 2 OTTHUMG00000189691.1 +55716 chr7 HAVANA gene 78347142 78359458 2170.0 + 0 ENSG00000231322.5 transcribed_processed_pseudogene RPL13AP17 1 OTTHUMG00000155514.2 pseudo_consens +55717 chr7 HAVANA gene 78392626 78448999 1077.0 - 0 ENSG00000285892.1 sense_intronic AC006043.1 2 OTTHUMG00000193205.1 +55718 chr7 HAVANA gene 78486530 78487028 499.0 + 0 ENSG00000226230.1 processed_pseudogene AC007237.1 1 OTTHUMG00000155515.1 pseudo_consens +55719 chr7 HAVANA gene 78939850 78940895 472.0 + 0 ENSG00000251276.1 antisense MAGI2-AS1 2 OTTHUMG00000155510.1 +55720 chr7 HAVANA gene 79008988 79012277 476.0 + 0 ENSG00000226978.1 antisense MAGI2-AS2 1 OTTHUMG00000155511.2 +55721 chr7 ENSEMBL gene 79030240 79030345 106.0 + 0 ENSG00000212545.1 snRNA RNU6-337P 3 +55722 chr7 HAVANA gene 79124739 79125750 1012.0 + 0 ENSG00000229110.1 processed_pseudogene AC006355.1 1 OTTHUMG00000155513.2 pseudo_consens +55723 chr7 HAVANA gene 79139829 79177210 317.0 + 0 ENSG00000281120.1 antisense AC006355.2 2 OTTHUMG00000189692.1 +55724 chr7 ENSEMBL gene 79343266 79343372 107.0 - 0 ENSG00000212482.1 snRNA RNU6-530P 3 +55725 chr7 HAVANA gene 79353410 79354392 983.0 + 0 ENSG00000222024.2 processed_pseudogene AC004945.1 1 OTTHUMG00000155464.1 pseudo_consens +55726 chr7 HAVANA gene 78017057 79453574 31529.0 - 0 ENSG00000187391.20 protein_coding MAGI2 1 OTTHUMG00000130697.18 ncRNA_host +55727 chr7 HAVANA gene 79452877 79471208 11625.0 + 0 ENSG00000234456.7 processed_transcript MAGI2-AS3 2 OTTHUMG00000155465.4 +55728 chr7 HAVANA gene 79543911 79544853 943.0 - 0 ENSG00000226285.1 processed_pseudogene NUP35P2 1 OTTHUMG00000155463.1 pseudo_consens +55729 chr7 ENSEMBL gene 79654109 79654227 119.0 + 0 ENSG00000200786.1 rRNA_pseudogene RNA5SP234 3 +55730 chr7 ENSEMBL gene 79912104 79912208 105.0 - 0 ENSG00000206818.1 snRNA RNU6-849P 3 +55731 chr7 HAVANA gene 80096600 80097215 616.0 - 0 ENSG00000230853.1 processed_pseudogene RPL10P11 1 OTTHUMG00000156444.1 pseudo_consens +55732 chr7 HAVANA gene 79768028 80226181 24206.0 + 0 ENSG00000127955.16 protein_coding GNAI1 2 OTTHUMG00000023523.16 +55733 chr7 ENSEMBL gene 80245926 80246225 300.0 + 0 ENSG00000244392.3 misc_RNA RN7SL869P 3 +55734 chr7 HAVANA gene 80246409 80312456 578.0 - 0 ENSG00000234223.2 lincRNA AC003988.1 2 OTTHUMG00000156443.2 +55735 chr7 ENSEMBL gene 80318253 80318544 292.0 + 0 ENSG00000240347.3 misc_RNA RN7SL35P 3 +55736 chr7 HAVANA gene 80377554 80377835 282.0 - 0 ENSG00000223550.1 processed_pseudogene SNRPBP1 2 OTTHUMG00000155381.1 overlapping_locus +55737 chr7 HAVANA gene 80312574 80391474 3819.0 - 0 ENSG00000232667.10 antisense AC004862.1 2 OTTHUMG00000155382.7 overlapping_locus +55738 chr7 HAVANA gene 80458671 80512020 1159.0 - 0 ENSG00000214415.3 protein_coding GNAT3 2 OTTHUMG00000155401.4 +55739 chr7 HAVANA gene 80662331 80662585 255.0 - 0 ENSG00000229436.1 processed_pseudogene AC073850.1 1 OTTHUMG00000156433.1 pseudo_consens +55740 chr7 HAVANA gene 80369575 80679277 10115.0 + 0 ENSG00000135218.18 protein_coding CD36 1 OTTHUMG00000155383.22 +55741 chr7 HAVANA gene 80742538 80922359 6268.0 - 0 ENSG00000075223.13 protein_coding SEMA3C 1 OTTHUMG00000023447.5 +55742 chr7 HAVANA gene 80972516 80974724 2209.0 - 0 ENSG00000279326.1 TEC AC004972.1 2 OTTHUMG00000173137.1 +55743 chr7 HAVANA gene 81191398 81192009 612.0 + 0 ENSG00000226671.1 processed_pseudogene AC005008.1 1 OTTHUMG00000156704.1 pseudo_consens,overlapping_locus +55744 chr7 HAVANA gene 81175508 81199115 942.0 + 0 ENSG00000237896.6 lincRNA AC005008.2 1 OTTHUMG00000156705.2 overlapping_locus +55745 chr7 HAVANA gene 81335106 81335183 78.0 + 0 ENSG00000223514.1 processed_pseudogene AC004866.1 2 OTTHUMG00000156706.1 +55746 chr7 HAVANA gene 81431731 81432796 481.0 + 0 ENSG00000224134.1 unprocessed_pseudogene AC004866.2 1 OTTHUMG00000155402.2 pseudo_consens +55747 chr7 HAVANA gene 81463036 81463613 578.0 - 0 ENSG00000232968.1 processed_pseudogene EIF4EP4 1 OTTHUMG00000155411.1 pseudo_consens +55748 chr7 HAVANA gene 81610884 81611326 443.0 - 0 ENSG00000230196.1 processed_pseudogene DDX43P3 1 OTTHUMG00000155404.1 pseudo_consens,overlapping_locus +55749 chr7 HAVANA gene 81489204 81691406 7429.0 - 0 ENSG00000233491.8 transcribed_unitary_pseudogene AC008163.1 2 OTTHUMG00000155403.7 +55750 chr7 HAVANA gene 81699008 81770438 9817.0 - 0 ENSG00000019991.16 protein_coding HGF 2 OTTHUMG00000023804.9 +55751 chr7 HAVANA gene 82009177 82029955 2651.0 + 0 ENSG00000223770.5 antisense AC006145.1 2 OTTHUMG00000154779.1 +55752 chr7 HAVANA gene 81946444 82443798 9010.0 - 0 ENSG00000153956.15 protein_coding CACNA2D1 1 OTTHUMG00000023622.10 +55753 chr7 HAVANA gene 82589848 82590691 844.0 - 0 ENSG00000213530.3 processed_pseudogene MTHFD2P5 1 OTTHUMG00000154816.2 pseudo_consens +55754 chr7 HAVANA gene 82657035 82657411 377.0 + 0 ENSG00000228711.1 processed_pseudogene AC004006.1 1 OTTHUMG00000154815.3 pseudo_consens +55755 chr7 ENSEMBL gene 83017898 83018011 114.0 + 0 ENSG00000202281.1 rRNA_pseudogene RNA5SP235 3 +55756 chr7 HAVANA gene 82754013 83162930 22873.0 - 0 ENSG00000186472.19 protein_coding PCLO 1 OTTHUMG00000154853.14 +55757 chr7 HAVANA gene 83355154 83362266 331.0 + 0 ENSG00000235503.2 antisense AC079799.1 2 OTTHUMG00000154683.2 +55758 chr7 HAVANA gene 83372652 83373096 445.0 - 0 ENSG00000285398.1 TEC AC079799.2 2 OTTHUMG00000192574.1 +55759 chr7 HAVANA gene 83424880 83425002 123.0 + 0 ENSG00000230617.1 processed_pseudogene AC079987.1 2 OTTHUMG00000154685.1 +55760 chr7 HAVANA gene 83363238 83649113 8424.0 - 0 ENSG00000170381.13 protein_coding SEMA3E 2 OTTHUMG00000154693.6 +55761 chr7 HAVANA gene 83663419 83664625 1207.0 + 0 ENSG00000230244.1 processed_pseudogene RAD23BP2 1 OTTHUMG00000154684.1 pseudo_consens +55762 chr7 HAVANA gene 83955777 84492724 9371.0 - 0 ENSG00000075213.10 protein_coding SEMA3A 2 OTTHUMG00000023443.15 +55763 chr7 HAVANA gene 84528122 84528830 709.0 - 0 ENSG00000227982.1 processed_pseudogene RPL7P30 1 OTTHUMG00000154720.2 pseudo_consens +55764 chr7 HAVANA gene 84532476 84584322 4276.0 + 0 ENSG00000235139.2 lincRNA AC003984.1 1 OTTHUMG00000154603.3 +55765 chr7 HAVANA gene 84847877 84848253 377.0 - 0 ENSG00000235243.1 processed_pseudogene AC093716.1 2 OTTHUMG00000154642.1 +55766 chr7 HAVANA gene 84876554 84876956 403.0 + 0 ENSG00000232605.2 processed_pseudogene HMGN2P11 2 OTTHUMG00000154605.1 +55767 chr7 HAVANA gene 84939349 84940245 782.0 - 0 ENSG00000232019.1 lincRNA AC074183.1 2 OTTHUMG00000154628.1 overlapping_locus +55768 chr7 HAVANA gene 84939335 84940256 922.0 - 0 ENSG00000280325.1 TEC AC074183.2 2 OTTHUMG00000154637.1 overlapping_locus +55769 chr7 HAVANA gene 84983556 84984506 951.0 + 0 ENSG00000229251.3 processed_pseudogene HNRNPA1P8 1 OTTHUMG00000154606.1 pseudo_consens +55770 chr7 HAVANA gene 85027828 85029692 1865.0 + 0 ENSG00000224059.1 processed_pseudogene HSPA8P16 1 OTTHUMG00000154604.1 pseudo_consens +55771 chr7 HAVANA gene 84995553 85186855 8062.0 - 0 ENSG00000153993.13 protein_coding SEMA3D 1 OTTHUMG00000154569.4 +55772 chr7 HAVANA gene 85381118 85381375 258.0 - 0 ENSG00000230614.3 processed_pseudogene DYNLL1P7 1 OTTHUMG00000154586.1 pseudo_consens +55773 chr7 HAVANA gene 85421122 85489293 813.0 + 0 ENSG00000225128.1 lincRNA LINC00972 2 OTTHUMG00000154585.2 +55774 chr7 HAVANA gene 85636013 85636344 332.0 - 0 ENSG00000227785.1 processed_pseudogene AC092013.1 1 OTTHUMG00000154619.1 pseudo_consens +55775 chr7 HAVANA gene 86216785 86217733 949.0 - 0 ENSG00000236610.1 processed_pseudogene SOCS5P1 2 OTTHUMG00000154618.1 +55776 chr7 HAVANA gene 86775081 86776022 269.0 - 0 ENSG00000231255.1 antisense AC005009.1 2 OTTHUMG00000153976.1 +55777 chr7 HAVANA gene 86784226 86786670 924.0 - 0 ENSG00000233073.1 antisense AC005009.2 1 OTTHUMG00000153975.1 +55778 chr7 HAVANA gene 86643914 86864884 4474.0 + 0 ENSG00000198822.10 protein_coding GRM3 2 OTTHUMG00000022884.6 +55779 chr7 HAVANA gene 86876906 87059699 8115.0 - 0 ENSG00000164659.14 protein_coding KIAA1324L 1 OTTHUMG00000153995.58 +55780 chr7 HAVANA gene 87109539 87111282 1744.0 + 0 ENSG00000261462.1 lincRNA AC004023.1 2 OTTHUMG00000173164.1 +55781 chr7 HAVANA gene 87151423 87152420 888.0 - 0 ENSG00000224046.1 antisense AC005076.1 2 OTTHUMG00000154197.1 +55782 chr7 ENSEMBL gene 87184849 87185020 172.0 + 0 ENSG00000278236.1 misc_RNA RF02271 3 +55783 chr7 HAVANA gene 87152361 87196337 9417.0 + 0 ENSG00000135164.18 protein_coding DMTF1 1 OTTHUMG00000154135.66 ncRNA_host +55784 chr7 ENSEMBL gene 87218611 87218712 102.0 - 0 ENSG00000200397.1 misc_RNA RF00019 3 +55785 chr7 HAVANA gene 87196160 87220587 3271.0 - 0 ENSG00000135185.11 protein_coding TMEM243 2 OTTHUMG00000130823.7 ncRNA_host +55786 chr7 ENSEMBL gene 87345082 87345233 152.0 + 0 ENSG00000273623.1 misc_RNA RF02195 3 +55787 chr7 ENSEMBL gene 87345305 87345486 182.0 + 0 ENSG00000276185.1 misc_RNA RF02196 3 +55788 chr7 HAVANA gene 87325225 87345515 1023.0 - 0 ENSG00000182165.17 lincRNA TP53TG1 2 OTTHUMG00000130822.5 +55789 chr7 HAVANA gene 87345681 87399795 4979.0 + 0 ENSG00000005469.11 protein_coding CROT 1 OTTHUMG00000023653.5 +55790 chr7 HAVANA gene 87401697 87480435 7494.0 - 0 ENSG00000005471.17 protein_coding ABCB4 2 OTTHUMG00000023396.20 +55791 chr7 HAVANA gene 87521461 87522410 950.0 + 0 ENSG00000231956.1 processed_pseudogene HNRNPA1P9 1 OTTHUMG00000154450.1 pseudo_consens +55792 chr7 HAVANA gene 87503633 87713323 5806.0 - 0 ENSG00000085563.14 protein_coding ABCB1 1 OTTHUMG00000023393.26 +55793 chr7 HAVANA gene 87627548 87832296 4710.0 + 0 ENSG00000105784.15 protein_coding RUNDC3B 2 OTTHUMG00000131035.4 +55794 chr7 HAVANA gene 87833568 87876357 5081.0 - 0 ENSG00000075303.12 protein_coding SLC25A40 2 OTTHUMG00000131033.12 +55795 chr7 HAVANA gene 87876216 87909541 4583.0 + 0 ENSG00000006634.7 protein_coding DBF4 2 OTTHUMG00000131034.6 +55796 chr7 HAVANA gene 87934143 88202889 12199.0 + 0 ENSG00000008277.14 protein_coding ADAM22 1 OTTHUMG00000137417.10 +55797 chr7 HAVANA gene 88216660 88219226 576.0 + 0 ENSG00000254003.1 antisense AC003991.2 1 OTTHUMG00000164017.1 +55798 chr7 HAVANA gene 88205118 88226993 4237.0 - 0 ENSG00000075142.13 protein_coding SRI 2 OTTHUMG00000157267.4 +55799 chr7 HAVANA gene 88219359 88304367 4838.0 + 0 ENSG00000228113.7 antisense AC003991.1 1 OTTHUMG00000153895.6 +55800 chr7 HAVANA gene 88270892 88306891 11245.0 - 0 ENSG00000127954.12 protein_coding STEAP4 2 OTTHUMG00000153853.7 +55801 chr7 HAVANA gene 88448788 88449017 230.0 - 0 ENSG00000225701.1 processed_pseudogene EIF4A1P13 1 OTTHUMG00000154432.1 pseudo_consens +55802 chr7 ENSEMBL gene 88449092 88449231 140.0 - 0 ENSG00000207094.1 snoRNA RF00272 3 +55803 chr7 HAVANA gene 88455309 88456191 883.0 + 0 ENSG00000270812.1 processed_pseudogene AC002069.2 1 OTTHUMG00000184446.1 pseudo_consens +55804 chr7 HAVANA gene 88512029 88513187 1159.0 - 0 ENSG00000235639.1 processed_pseudogene AC002069.1 1 OTTHUMG00000154429.1 pseudo_consens +55805 chr7 HAVANA gene 88564793 88566281 1489.0 - 0 ENSG00000228928.1 processed_pseudogene KPNA2P2 1 OTTHUMG00000154417.2 pseudo_consens +55806 chr7 HAVANA gene 88610241 88610669 429.0 - 0 ENSG00000231763.1 processed_pseudogene PQLC1P1 1 OTTHUMG00000154430.1 pseudo_consens +55807 chr7 HAVANA gene 88639014 88640416 1403.0 + 0 ENSG00000237709.1 processed_pseudogene EEF1A1P28 1 OTTHUMG00000154431.1 pseudo_consens +55808 chr7 HAVANA gene 88749470 88749694 225.0 + 0 ENSG00000227979.1 processed_pseudogene AC002127.1 2 OTTHUMG00000153858.1 overlapping_locus +55809 chr7 HAVANA gene 88710631 88756725 792.0 + 0 ENSG00000233420.1 lincRNA AC002127.2 2 OTTHUMG00000153893.1 overlapping_locus +55810 chr7 HAVANA gene 88794106 88795721 1023.0 - 0 ENSG00000164645.2 protein_coding TEX47 2 OTTHUMG00000153859.1 +55811 chr7 HAVANA gene 88759368 89337057 4685.0 + 0 ENSG00000182348.6 protein_coding ZNF804B 2 OTTHUMG00000131037.3 +55812 chr7 HAVANA gene 89443974 89494262 671.0 + 0 ENSG00000227863.2 lincRNA AC002383.1 2 OTTHUMG00000153911.2 +55813 chr7 ENSEMBL gene 89754620 89754726 107.0 - 0 ENSG00000239075.1 snRNA RNU6-274P 3 +55814 chr7 HAVANA gene 90119299 90122890 578.0 - 0 ENSG00000238358.2 lincRNA AC004969.1 2 OTTHUMG00000158345.1 overlapping_locus +55815 chr7 HAVANA gene 90119400 90125600 2018.0 + 0 ENSG00000235436.10 transcribed_unprocessed_pseudogene DPY19L2P4 2 OTTHUMG00000158346.1 +55816 chr7 HAVANA gene 90154375 90164829 1625.0 + 0 ENSG00000164647.8 protein_coding STEAP1 2 OTTHUMG00000023006.6 +55817 chr7 HAVANA gene 89882353 90211635 1208.0 - 0 ENSG00000227646.7 processed_transcript STEAP2-AS1 2 OTTHUMG00000065036.5 overlapping_locus +55818 chr7 HAVANA gene 90167590 90238137 8715.0 + 0 ENSG00000157214.13 protein_coding STEAP2 1 OTTHUMG00000023341.11 +55819 chr7 ENSEMBL gene 90251923 90252020 98.0 + 0 ENSG00000207488.1 misc_RNA RF00019 3 +55820 chr7 HAVANA gene 90266034 90270216 289.0 - 0 ENSG00000234459.1 antisense AC002064.2 2 OTTHUMG00000063537.2 +55821 chr7 HAVANA gene 90245174 90311063 9139.0 + 0 ENSG00000105792.19 protein_coding CFAP69 2 OTTHUMG00000023434.9 ncRNA_host +55822 chr7 HAVANA gene 90316503 90321308 3877.0 - 0 ENSG00000283267.1 protein_coding FAM237B 2 OTTHUMG00000191757.1 +55823 chr7 HAVANA gene 90312496 90322592 733.0 + 0 ENSG00000225498.1 lincRNA AC002064.1 2 OTTHUMG00000063284.1 +55824 chr7 HAVANA gene 90345873 90346218 346.0 - 0 ENSG00000280440.1 TEC AC002064.3 2 OTTHUMG00000065234.1 +55825 chr7 HAVANA gene 90335223 90391455 10436.0 + 0 ENSG00000105793.15 protein_coding GTPBP10 1 OTTHUMG00000023655.10 overlapping_locus +55826 chr7 HAVANA gene 90469787 90488964 380.0 + 0 ENSG00000251154.1 unprocessed_pseudogene AC002456.2 2 OTTHUMG00000022900.6 overlapping_locus +55827 chr7 HAVANA gene 90403434 90513391 371.0 + 0 ENSG00000273299.1 processed_transcript AC006153.1 2 OTTHUMG00000186370.1 overlapping_locus +55828 chr7 HAVANA gene 90383721 90513402 6741.0 + 0 ENSG00000157224.15 protein_coding CLDN12 2 OTTHUMG00000156612.6 overlapping_locus +55829 chr7 HAVANA gene 90590619 90597353 616.0 - 0 ENSG00000223969.5 antisense AC002456.1 1 OTTHUMG00000063906.3 +55830 chr7 HAVANA gene 90631906 90632568 639.0 + 0 ENSG00000223584.1 processed_pseudogene TVP23CP1 1 OTTHUMG00000033493.2 pseudo_consens,overlapping_locus +55831 chr7 HAVANA gene 91107374 91107793 420.0 + 0 ENSG00000226254.1 processed_pseudogene PTP4A1P3 1 OTTHUMG00000033517.2 pseudo_consens,overlapping_locus +55832 chr7 HAVANA gene 90466424 91210590 6841.0 + 0 ENSG00000058091.16 protein_coding CDK14 2 OTTHUMG00000023649.10 overlapping_locus +55833 chr7 HAVANA gene 91264364 91271326 6963.0 + 0 ENSG00000157240.3 protein_coding FZD1 2 OTTHUMG00000023046.3 +55834 chr7 HAVANA gene 91320128 91321103 976.0 - 0 ENSG00000225843.1 processed_pseudogene NIPA2P1 1 OTTHUMG00000156061.1 pseudo_consens +55835 chr7 HAVANA gene 91311368 91515409 1162.0 + 0 ENSG00000243144.6 lincRNA AC079760.2 1 OTTHUMG00000156059.3 +55836 chr7 HAVANA gene 91380778 91556848 202.0 - 0 ENSG00000235450.1 lincRNA AC079760.1 2 OTTHUMG00000156060.1 +55837 chr7 HAVANA gene 91638847 91643512 536.0 - 0 ENSG00000223665.1 lincRNA AC000058.1 2 OTTHUMG00000156062.1 +55838 chr7 HAVANA gene 91692008 91880720 4890.0 - 0 ENSG00000127989.13 protein_coding MTERF1 2 OTTHUMG00000156057.2 +55839 chr7 HAVANA gene 91940867 92110673 18210.0 + 0 ENSG00000127914.16 protein_coding AKAP9 1 OTTHUMG00000131127.5 +55840 chr7 HAVANA gene 92112151 92134803 3584.0 - 0 ENSG00000001630.16 protein_coding CYP51A1 1 OTTHUMG00000193420.1 overlapping_locus +55841 chr7 HAVANA gene 92112159 92179511 4001.0 - 0 ENSG00000285772.1 protein_coding AC000120.2 2 OTTHUMG00000131131.6 overlapping_locus +55842 chr7 HAVANA gene 92141643 92179531 4450.0 - 0 ENSG00000240720.8 protein_coding LRRD1 2 OTTHUMG00000155861.5 overlapping_locus +55843 chr7 HAVANA gene 92134604 92180725 2957.0 + 0 ENSG00000188693.7 antisense CYP51A1-AS1 1 OTTHUMG00000156056.1 +55844 chr7 ENSEMBL gene 92202243 92202334 92.0 - 0 ENSG00000200769.1 misc_RNA RF00019 3 +55845 chr7 ENSEMBL gene 92204015 92204098 84.0 - 0 ENSG00000221520.1 miRNA MIR1285-1 3 +55846 chr7 HAVANA gene 92200014 92206857 1589.0 - 0 ENSG00000243107.1 sense_overlapping AC000120.1 2 OTTHUMG00000155860.1 ncRNA_host,overlapping_locus +55847 chr7 HAVANA gene 92131774 92245924 2642.0 - 0 ENSG00000285953.1 protein_coding AC000120.3 2 OTTHUMG00000193355.1 ncRNA_host,overlapping_locus +55848 chr7 HAVANA gene 92198969 92246166 6204.0 - 0 ENSG00000001631.15 protein_coding KRIT1 2 OTTHUMG00000131187.10 ncRNA_host,overlapping_locus +55849 chr7 HAVANA gene 92246234 92401384 7130.0 + 0 ENSG00000001629.9 protein_coding ANKIB1 2 OTTHUMG00000155859.2 +55850 chr7 HAVANA gene 92442077 92442489 413.0 + 0 ENSG00000270453.1 processed_pseudogene AC007566.2 1 OTTHUMG00000184444.1 pseudo_consens +55851 chr7 HAVANA gene 92412550 92447813 2037.0 - 0 ENSG00000230927.3 transcribed_unitary_pseudogene TMBIM7P 2 OTTHUMG00000155903.2 +55852 chr7 HAVANA gene 92447448 92459432 5728.0 + 0 ENSG00000157259.7 protein_coding GATAD1 2 OTTHUMG00000131201.3 overlapping_locus +55853 chr7 HAVANA gene 92468380 92477986 6130.0 - 0 ENSG00000242950.6 protein_coding ERVW-1 2 OTTHUMG00000131249.2 +55854 chr7 HAVANA gene 92457564 92491610 701.0 + 0 ENSG00000244055.1 antisense AC007566.1 1 OTTHUMG00000155862.2 overlapping_locus +55855 chr7 HAVANA gene 92487020 92528531 7849.0 - 0 ENSG00000127980.15 protein_coding PEX1 1 OTTHUMG00000023926.6 +55856 chr7 HAVANA gene 92528773 92538005 4353.0 + 0 ENSG00000127993.15 protein_coding RBM48 1 OTTHUMG00000159535.3 +55857 chr7 HAVANA gene 92540268 92557877 573.0 - 0 ENSG00000278819.1 unprocessed_pseudogene AC005156.1 2 OTTHUMG00000187687.1 +55858 chr7 HAVANA gene 92560793 92590394 4462.0 - 0 ENSG00000234545.7 protein_coding FAM133B 2 OTTHUMG00000155863.9 +55859 chr7 ENSEMBL gene 92701708 92701814 107.0 - 0 ENSG00000206763.1 snRNA RNU6-10P 3 +55860 chr7 HAVANA gene 92604921 92836594 12260.0 - 0 ENSG00000105810.9 protein_coding CDK6 2 OTTHUMG00000131697.3 ncRNA_host +55861 chr7 HAVANA gene 92836483 92917187 667.0 + 0 ENSG00000237819.5 antisense AC002454.1 2 OTTHUMG00000155818.1 +55862 chr7 ENSEMBL gene 92971002 92971299 298.0 - 0 ENSG00000266794.2 misc_RNA RN7SL7P 3 +55863 chr7 HAVANA gene 93099513 93118023 6855.0 - 0 ENSG00000205413.7 protein_coding SAMD9 2 OTTHUMG00000155809.3 +55864 chr7 HAVANA gene 93130055 93148369 7135.0 - 0 ENSG00000177409.11 protein_coding SAMD9L 2 OTTHUMG00000155807.3 +55865 chr7 HAVANA gene 93188586 93226524 2483.0 - 0 ENSG00000188175.9 protein_coding HEPACAM2 2 OTTHUMG00000131732.3 +55866 chr7 HAVANA gene 93232340 93361121 9454.0 + 0 ENSG00000004766.16 protein_coding VPS50 2 OTTHUMG00000131733.5 +55867 chr7 ENSEMBL gene 93482760 93482855 96.0 - 0 ENSG00000208014.1 miRNA MIR653 3 +55868 chr7 ENSEMBL gene 93483936 93484019 84.0 - 0 ENSG00000207656.1 miRNA MIR489 3 +55869 chr7 HAVANA gene 93424487 93574730 4042.0 - 0 ENSG00000004948.14 protein_coding CALCR 2 OTTHUMG00000023599.7 ncRNA_host +55870 chr7 HAVANA gene 93669826 93670077 252.0 - 0 ENSG00000237729.2 processed_pseudogene AC002075.2 2 OTTHUMG00000155773.1 +55871 chr7 ENSEMBL gene 93716928 93717005 78.0 + 0 ENSG00000265423.1 miRNA MIR4652 3 +55872 chr7 HAVANA gene 93777839 93778514 676.0 + 0 ENSG00000225898.1 processed_pseudogene AC002075.1 1 OTTHUMG00000155774.1 pseudo_consens,overlapping_locus +55873 chr7 HAVANA gene 93844789 93845308 520.0 + 0 ENSG00000213483.4 processed_pseudogene NDUFAF4P2 1 OTTHUMG00000155771.1 pseudo_consens,overlapping_locus +55874 chr7 HAVANA gene 93885396 93890991 2682.0 - 0 ENSG00000105825.12 protein_coding TFPI2 1 OTTHUMG00000022963.4 +55875 chr7 HAVANA gene 93890913 93893601 527.0 + 0 ENSG00000234695.1 antisense AC002076.1 1 OTTHUMG00000155770.1 overlapping_locus +55876 chr7 HAVANA gene 93591573 93911265 2361.0 + 0 ENSG00000127928.12 protein_coding GNGT1 2 OTTHUMG00000022908.4 ncRNA_host,overlapping_locus +55877 chr7 HAVANA gene 93914987 93915108 122.0 + 0 ENSG00000278388.1 unprocessed_pseudogene AC002076.2 2 OTTHUMG00000187688.1 +55878 chr7 HAVANA gene 93921699 93928610 3055.0 + 0 ENSG00000127920.5 protein_coding GNG11 2 OTTHUMG00000023411.4 +55879 chr7 HAVANA gene 93954044 93956519 2476.0 - 0 ENSG00000278959.1 TEC AC006378.2 2 OTTHUMG00000173369.1 +55880 chr7 HAVANA gene 93962762 94004382 5247.0 - 0 ENSG00000105829.12 protein_coding BET1 2 OTTHUMG00000023487.5 +55881 chr7 HAVANA gene 93969442 94011113 636.0 + 0 ENSG00000236861.6 antisense AC006378.1 2 OTTHUMG00000155775.2 +55882 chr7 HAVANA gene 94022833 94066661 1064.0 + 0 ENSG00000236453.5 lincRNA AC003092.1 2 OTTHUMG00000155746.2 +55883 chr7 HAVANA gene 94071759 94077157 446.0 - 0 ENSG00000236938.1 lincRNA AC003092.2 1 OTTHUMG00000155769.1 +55884 chr7 HAVANA gene 94311138 94347063 680.0 + 0 ENSG00000285964.1 processed_transcript AC002074.2 2 OTTHUMG00000193028.1 +55885 chr7 HAVANA gene 94278680 94395608 1095.0 - 0 ENSG00000285090.1 antisense AC002074.1 2 OTTHUMG00000192620.1 +55886 chr7 HAVANA gene 94394561 94431232 11156.0 + 0 ENSG00000164692.17 protein_coding COL1A2 2 OTTHUMG00000148675.2 +55887 chr7 ENSEMBL gene 94495299 94495404 106.0 + 0 ENSG00000222870.1 snRNA RNU6-1328P 3 +55888 chr7 HAVANA gene 94509219 94557019 5271.0 + 0 ENSG00000127995.16 protein_coding CASD1 2 OTTHUMG00000023356.5 +55889 chr7 HAVANA gene 94524204 94656572 20884.0 - 0 ENSG00000127990.17 protein_coding SGCE 2 OTTHUMG00000022828.18 +55890 chr7 HAVANA gene 94656325 94669695 6689.0 + 0 ENSG00000242265.5 protein_coding PEG10 2 OTTHUMG00000155578.5 +55891 chr7 HAVANA gene 94695027 94695819 793.0 - 0 ENSG00000232385.2 processed_pseudogene RPS3AP25 1 OTTHUMG00000155577.1 pseudo_consens +55892 chr7 ENSEMBL gene 94712409 94712511 103.0 + 0 ENSG00000239030.1 snRNA RNU6-956P 3 +55893 chr7 HAVANA gene 94738652 94739411 760.0 + 0 ENSG00000214342.2 processed_pseudogene ATP5PBP2 1 OTTHUMG00000155560.1 pseudo_consens +55894 chr7 HAVANA gene 94782886 94783525 640.0 + 0 ENSG00000230682.1 processed_pseudogene GRPEL2P3 1 OTTHUMG00000155561.2 pseudo_consens +55895 chr7 ENSEMBL gene 94801514 94801812 299.0 + 0 ENSG00000222220.1 misc_RNA RN7SKP129 3 +55896 chr7 HAVANA gene 94833904 94834447 544.0 + 0 ENSG00000219807.2 processed_pseudogene ARF1P1 1 OTTHUMG00000155563.1 pseudo_consens +55897 chr7 HAVANA gene 95018163 95018397 235.0 - 0 ENSG00000271159.1 processed_pseudogene HINT1P2 1 OTTHUMG00000184514.1 pseudo_consens +55898 chr7 HAVANA gene 95018407 95018554 148.0 + 0 ENSG00000231153.1 processed_pseudogene AC002429.1 2 OTTHUMG00000155564.1 overlapping_locus +55899 chr7 ENSEMBL gene 95098227 95098367 141.0 + 0 ENSG00000201607.1 snRNA RNU4-16P 3 +55900 chr7 HAVANA gene 95035731 95214332 4025.0 - 0 ENSG00000236197.3 antisense AC002429.2 2 OTTHUMG00000155562.3 +55901 chr7 HAVANA gene 94907202 95296415 11151.0 + 0 ENSG00000158528.11 protein_coding PPP1R9A 1 OTTHUMG00000155566.3 ncRNA_host,overlapping_locus +55902 chr7 HAVANA gene 95297676 95324707 2832.0 - 0 ENSG00000005421.8 protein_coding PON1 2 OTTHUMG00000153894.3 +55903 chr7 HAVANA gene 95348718 95348910 193.0 - 0 ENSG00000237160.2 processed_pseudogene AC004022.2 2 OTTHUMG00000154136.2 +55904 chr7 HAVANA gene 95350164 95351229 1066.0 + 0 ENSG00000228751.1 processed_pseudogene AC004022.1 2 OTTHUMG00000154137.2 +55905 chr7 HAVANA gene 95359944 95396368 4040.0 - 0 ENSG00000105852.10 protein_coding PON3 2 OTTHUMG00000153917.4 +55906 chr7 HAVANA gene 95416108 95416462 355.0 + 0 ENSG00000273138.1 antisense AC005021.1 2 OTTHUMG00000186281.1 +55907 chr7 HAVANA gene 95404863 95435329 3843.0 - 0 ENSG00000105854.12 protein_coding PON2 2 OTTHUMG00000153948.8 +55908 chr7 HAVANA gene 95471835 95473998 534.0 + 0 ENSG00000233942.1 lincRNA AC004012.1 2 OTTHUMG00000154143.1 +55909 chr7 HAVANA gene 95478444 95540232 4605.0 + 0 ENSG00000005981.12 protein_coding ASB4 2 OTTHUMG00000153960.7 +55910 chr7 HAVANA gene 95542145 95544542 2398.0 + 0 ENSG00000279525.1 TEC AC002451.2 2 OTTHUMG00000187152.1 +55911 chr7 HAVANA gene 95583499 95596491 4519.0 - 0 ENSG00000004799.7 protein_coding PDK4 2 OTTHUMG00000153977.2 +55912 chr7 HAVANA gene 95596682 95613719 1043.0 + 0 ENSG00000231170.5 antisense AC002451.1 1 OTTHUMG00000154145.1 +55913 chr7 HAVANA gene 95772506 96110322 4568.0 + 0 ENSG00000158560.14 protein_coding DYNC1I1 1 OTTHUMG00000153983.6 +55914 chr7 HAVANA gene 96118647 96119995 1349.0 + 0 ENSG00000279067.1 TEC AC002540.1 2 OTTHUMG00000173262.1 +55915 chr7 ENSEMBL gene 96219662 96219756 95.0 - 0 ENSG00000208025.1 miRNA MIR591 3 +55916 chr7 HAVANA gene 96283357 96283804 448.0 + 0 ENSG00000237551.1 processed_pseudogene AC096775.1 1 OTTHUMG00000154144.1 pseudo_consens +55917 chr7 HAVANA gene 96306810 96306874 65.0 + 0 ENSG00000275834.1 processed_pseudogene AC084368.1 2 OTTHUMG00000187689.1 +55918 chr7 HAVANA gene 96120220 96322147 3710.0 - 0 ENSG00000004864.13 protein_coding SLC25A13 2 OTTHUMG00000023074.5 ncRNA_host +55919 chr7 ENSEMBL gene 96330638 96330744 107.0 + 0 ENSG00000207045.1 snRNA RNU6-532P 3 +55920 chr7 ENSEMBL gene 96341140 96341246 107.0 + 0 ENSG00000207115.1 snRNA RNU6-364P 3 +55921 chr7 ENSEMBL gene 96377857 96377920 64.0 + 0 ENSG00000252872.1 snRNA RNU7-188P 3 +55922 chr7 HAVANA gene 96481626 96709891 11490.0 - 0 ENSG00000127922.9 protein_coding SEM1 2 OTTHUMG00000150680.8 +55923 chr7 HAVANA gene 96858182 96859618 1437.0 + 0 ENSG00000227284.2 processed_pseudogene MARK2P10 1 OTTHUMG00000154199.1 pseudo_consens +55924 chr7 ENSEMBL gene 96940068 96940364 297.0 - 0 ENSG00000244318.3 misc_RNA RN7SL252P 3 +55925 chr7 ENSEMBL gene 96965302 96965481 180.0 + 0 ENSG00000274409.1 misc_RNA RF01887 3 +55926 chr7 ENSEMBL gene 96965489 96965695 207.0 + 0 ENSG00000277124.1 misc_RNA RF01888 3 +55927 chr7 HAVANA gene 97005548 97011039 3449.0 + 0 ENSG00000006377.10 protein_coding DLX6 2 OTTHUMG00000154201.6 +55928 chr7 HAVANA gene 96955141 97014065 16633.0 - 0 ENSG00000231764.8 antisense DLX6-AS1 2 OTTHUMG00000154198.8 +55929 chr7 ENSEMBL gene 97013925 97014066 142.0 - 0 ENSG00000274709.1 misc_RNA RF01778 3 +55930 chr7 HAVANA gene 97020392 97024950 1748.0 - 0 ENSG00000105880.6 protein_coding DLX5 2 OTTHUMG00000154200.6 +55931 chr7 HAVANA gene 97135015 97135561 547.0 - 0 ENSG00000224551.1 processed_pseudogene HMGB3P21 2 OTTHUMG00000154299.1 +55932 chr7 HAVANA gene 97116590 97181763 2303.0 + 0 ENSG00000196636.7 protein_coding SDHAF3 1 OTTHUMG00000154064.6 +55933 chr7 HAVANA gene 97200708 97201483 776.0 - 0 ENSG00000224475.1 processed_pseudogene AC073900.1 1 OTTHUMG00000154124.1 pseudo_consens +55934 chr7 HAVANA gene 97437518 97437896 379.0 + 0 ENSG00000226046.1 processed_pseudogene AP1S2P1 1 OTTHUMG00000154127.1 pseudo_consens +55935 chr7 ENSEMBL gene 97598933 97599260 328.0 - 0 ENSG00000199475.1 misc_RNA RN7SKP104 3 +55936 chr7 HAVANA gene 97731908 97740472 1888.0 + 0 ENSG00000006128.11 protein_coding TAC1 2 OTTHUMG00000154069.3 +55937 chr7 HAVANA gene 97870167 97870289 123.0 + 0 ENSG00000226744.1 processed_pseudogene AC005326.1 2 OTTHUMG00000154123.1 +55938 chr7 HAVANA gene 97852118 97872542 4455.0 - 0 ENSG00000070669.16 protein_coding ASNS 1 OTTHUMG00000022892.13 +55939 chr7 HAVANA gene 97885868 97886074 207.0 + 0 ENSG00000231812.1 processed_pseudogene SNRPCP9 2 OTTHUMG00000154122.1 +55940 chr7 HAVANA gene 97898347 97899115 769.0 - 0 ENSG00000237818.1 processed_pseudogene RPS3AP29 1 OTTHUMG00000154184.2 pseudo_consens +55941 chr7 HAVANA gene 97906429 97906822 394.0 + 0 ENSG00000231859.1 processed_pseudogene AC079781.1 2 OTTHUMG00000154164.1 +55942 chr7 HAVANA gene 97908256 97908424 169.0 + 0 ENSG00000232032.1 processed_pseudogene AC079781.2 1 OTTHUMG00000154163.1 pseudo_consens +55943 chr7 HAVANA gene 97928082 97928300 219.0 - 0 ENSG00000284627.1 transcribed_unprocessed_pseudogene AC079781.4 1 OTTHUMG00000192224.1 pseudo_consens,overlapping_locus +55944 chr7 HAVANA gene 97938439 97938794 356.0 - 0 ENSG00000232097.1 processed_pseudogene AC079781.3 1 OTTHUMG00000154187.1 pseudo_consens +55945 chr7 HAVANA gene 97946987 97947998 1012.0 - 0 ENSG00000238228.1 unprocessed_pseudogene OR7E7P 1 OTTHUMG00000154185.1 pseudo_consens +55946 chr7 ENSEMBL gene 97963658 97963726 69.0 + 0 ENSG00000266318.1 miRNA MIR5692A1 3 +55947 chr7 ENSEMBL gene 97964405 97964481 77.0 - 0 ENSG00000266668.1 miRNA MIR5692C2 3 +55948 chr7 HAVANA gene 97966090 97967074 985.0 - 0 ENSG00000183444.10 unprocessed_pseudogene OR7E38P 2 OTTHUMG00000154186.2 overlapping_locus +55949 chr7 HAVANA gene 97966377 97970404 1910.0 - 0 ENSG00000285725.1 processed_transcript AC004967.2 2 OTTHUMG00000193353.1 overlapping_locus +55950 chr7 HAVANA gene 97969005 97972254 447.0 - 0 ENSG00000243554.1 transcribed_unprocessed_pseudogene AC004967.1 2 OTTHUMG00000154182.3 overlapping_locus +55951 chr7 HAVANA gene 97851688 97972985 4295.0 - 0 ENSG00000284707.1 processed_transcript AC079781.5 2 OTTHUMG00000192223.1 ncRNA_host,overlapping_locus +55952 chr7 HAVANA gene 97984684 97991169 833.0 - 0 ENSG00000135175.5 protein_coding OCM2 2 OTTHUMG00000154162.3 +55953 chr7 ENSEMBL gene 97998325 97998622 298.0 + 0 ENSG00000277946.1 misc_RNA RN7SL478P 3 +55954 chr7 HAVANA gene 98106885 98209633 9139.0 + 0 ENSG00000164715.5 protein_coding LMTK2 2 OTTHUMG00000154256.3 +55955 chr7 HAVANA gene 98211427 98212979 798.0 + 0 ENSG00000180535.3 protein_coding BHLHA15 2 OTTHUMG00000154289.2 +55956 chr7 HAVANA gene 98214624 98252251 9066.0 - 0 ENSG00000205356.9 protein_coding TECPR1 2 OTTHUMG00000154273.6 +55957 chr7 HAVANA gene 98252379 98310441 5139.0 + 0 ENSG00000164713.9 protein_coding BRI3 2 OTTHUMG00000154275.4 +55958 chr7 HAVANA gene 98322853 98323430 578.0 + 0 ENSG00000272950.1 antisense AC093799.1 2 OTTHUMG00000186295.1 +55959 chr7 HAVANA gene 98385801 98386584 784.0 - 0 ENSG00000214389.2 processed_pseudogene RPS3AP26 1 OTTHUMG00000154287.1 pseudo_consens,overlapping_locus +55960 chr7 HAVANA gene 98291651 98401068 4798.0 - 0 ENSG00000006453.13 protein_coding BAIAP2L1 2 OTTHUMG00000165117.1 overlapping_locus +55961 chr7 HAVANA gene 98454119 98454617 499.0 - 0 ENSG00000213455.3 processed_pseudogene PPIAP82 1 OTTHUMG00000154288.1 pseudo_consens +55962 chr7 HAVANA gene 98478551 98479225 348.0 - 0 ENSG00000223402.1 processed_pseudogene AC074121.1 1 OTTHUMG00000154370.2 pseudo_consens +55963 chr7 HAVANA gene 98617297 98629868 3016.0 + 0 ENSG00000106236.3 protein_coding NPTX2 2 OTTHUMG00000154369.1 +55964 chr7 ENSEMBL gene 98794718 98794824 107.0 - 0 ENSG00000207204.1 snRNA RNU6-393P 3 +55965 chr7 HAVANA gene 98846488 98870771 4663.0 - 0 ENSG00000166448.14 protein_coding TMEM130 1 OTTHUMG00000154419.7 +55966 chr7 ENSEMBL gene 98881650 98881729 80.0 + 0 ENSG00000266019.1 miRNA MIR3609 3 +55967 chr7 HAVANA gene 98998538 98999930 1393.0 - 0 ENSG00000238109.1 processed_pseudogene AC004893.1 1 OTTHUMG00000154418.1 pseudo_consens +55968 chr7 HAVANA gene 99032894 99032940 47.0 + 0 ENSG00000284840.1 transcribed_unprocessed_pseudogene AC004893.2 2 OTTHUMG00000192511.1 overlapping_locus +55969 chr7 HAVANA gene 98877933 99050831 19972.0 + 0 ENSG00000196367.13 protein_coding TRRAP 1 OTTHUMG00000150403.5 ncRNA_host,overlapping_locus +55970 chr7 HAVANA gene 99027438 99144100 6276.0 - 0 ENSG00000198742.9 protein_coding SMURF1 2 OTTHUMG00000150272.3 +55971 chr7 HAVANA gene 99173574 99207506 1725.0 - 0 ENSG00000185467.7 protein_coding KPNA7 2 OTTHUMG00000154412.1 +55972 chr7 HAVANA gene 99238829 99311130 6307.0 + 0 ENSG00000002079.14 transcribed_unitary_pseudogene MYH16 1 OTTHUMG00000154426.5 pseudo_consens +55973 chr7 HAVANA gene 99252452 99325826 4408.0 - 0 ENSG00000284523.1 antisense AC004834.1 2 OTTHUMG00000192203.1 +55974 chr7 HAVANA gene 99325910 99366262 2053.0 + 0 ENSG00000241685.9 protein_coding ARPC1A 2 OTTHUMG00000192204.1 overlapping_locus +55975 chr7 HAVANA gene 99325879 99394653 2705.0 + 0 ENSG00000284292.1 protein_coding AC004922.1 2 OTTHUMG00000154553.3 overlapping_locus +55976 chr7 HAVANA gene 99374249 99394816 3988.0 + 0 ENSG00000130429.14 protein_coding ARPC1B 2 OTTHUMG00000154552.34 overlapping_locus +55977 chr7 HAVANA gene 99392048 99408829 2854.0 - 0 ENSG00000106244.12 protein_coding PDAP1 2 OTTHUMG00000154629.2 +55978 chr7 HAVANA gene 99408641 99419616 2374.0 + 0 ENSG00000106245.10 protein_coding BUD31 1 OTTHUMG00000154602.3 +55979 chr7 HAVANA gene 99442890 99443496 607.0 - 0 ENSG00000228335.1 processed_pseudogene AC073063.1 1 OTTHUMG00000154658.1 pseudo_consens,overlapping_locus +55980 chr7 HAVANA gene 99438922 99457371 4250.0 + 0 ENSG00000160917.14 protein_coding CPSF4 1 OTTHUMG00000154599.23 +55981 chr7 HAVANA gene 99416739 99466163 5805.0 - 0 ENSG00000106246.17 protein_coding PTCD1 2 OTTHUMG00000154600.7 overlapping_locus +55982 chr7 HAVANA gene 99419749 99466197 2859.0 - 0 ENSG00000248919.7 protein_coding ATP5MF-PTCD1 1 OTTHUMG00000160779.2 overlapping_locus +55983 chr7 HAVANA gene 99448475 99466331 2275.0 - 0 ENSG00000241468.7 protein_coding ATP5MF 2 OTTHUMG00000154609.7 overlapping_locus +55984 chr7 HAVANA gene 99486519 99500324 3505.0 - 0 ENSG00000160908.14 protein_coding ZNF394 1 OTTHUMG00000154660.1 +55985 chr7 HAVANA gene 99472841 99503650 6683.0 + 0 ENSG00000198556.13 protein_coding ZNF789 1 OTTHUMG00000154601.4 +55986 chr7 HAVANA gene 99504651 99534700 6056.0 + 0 ENSG00000196652.11 protein_coding ZKSCAN5 2 OTTHUMG00000156749.1 +55987 chr7 HAVANA gene 99546308 99558536 2717.0 - 0 ENSG00000221909.2 protein_coding FAM200A 2 OTTHUMG00000156723.2 +55988 chr7 HAVANA gene 99558406 99576453 8401.0 + 0 ENSG00000197343.10 protein_coding ZNF655 1 OTTHUMG00000185968.2 overlapping_locus +55989 chr7 HAVANA gene 99558695 99607810 830.0 + 0 ENSG00000272647.3 protein_coding AC005020.2 2 OTTHUMG00000191587.1 overlapping_locus +55990 chr7 HAVANA gene 99598066 99610813 1410.0 + 0 ENSG00000244219.6 protein_coding TMEM225B 2 OTTHUMG00000156636.2 overlapping_locus +55991 chr7 HAVANA gene 99616946 99632407 7094.0 + 0 ENSG00000197037.10 protein_coding ZSCAN25 2 OTTHUMG00000074055.6 +55992 chr7 HAVANA gene 99638242 99638767 526.0 - 0 ENSG00000224448.1 processed_pseudogene AC005020.1 1 OTTHUMG00000156727.1 pseudo_consens +55993 chr7 HAVANA gene 99648194 99680026 6759.0 - 0 ENSG00000106258.14 protein_coding CYP3A5 2 OTTHUMG00000156724.3 +55994 chr7 HAVANA gene 99685145 99700034 256.0 - 0 ENSG00000282277.1 unprocessed_pseudogene CYP3A51P 2 OTTHUMG00000191416.1 overlapping_locus +55995 chr7 HAVANA gene 99685226 99735093 1608.0 - 0 ENSG00000282301.2 protein_coding CYP3A7-CYP3A51P 2 OTTHUMG00000191417.2 overlapping_locus +55996 chr7 HAVANA gene 99684957 99735196 3810.0 - 0 ENSG00000160870.13 protein_coding CYP3A7 2 OTTHUMG00000156726.2 overlapping_locus +55997 chr7 HAVANA gene 99766543 99766892 350.0 + 0 ENSG00000273407.1 antisense AC069294.1 2 OTTHUMG00000186290.1 +55998 chr7 HAVANA gene 99756960 99784265 3141.0 - 0 ENSG00000160868.14 protein_coding CYP3A4 1 OTTHUMG00000156651.2 +55999 chr7 HAVANA gene 99820018 99820086 69.0 + 0 ENSG00000261511.1 unprocessed_pseudogene CYP3A137P 2 OTTHUMG00000172706.1 +56000 chr7 HAVANA gene 99828013 99866102 2637.0 + 0 ENSG00000021461.16 protein_coding CYP3A43 2 OTTHUMG00000156498.3 +56001 chr7 HAVANA gene 99869841 99869894 54.0 + 0 ENSG00000260445.1 unprocessed_pseudogene AC011904.1 2 OTTHUMG00000172691.1 +56002 chr7 HAVANA gene 99872168 99872258 91.0 + 0 ENSG00000260524.1 unprocessed_pseudogene CYP3A52P 2 OTTHUMG00000172692.1 +56003 chr7 HAVANA gene 99875987 99877057 1071.0 - 0 ENSG00000244623.1 protein_coding OR2AE1 2 OTTHUMG00000156650.1 overlapping_locus +56004 chr7 HAVANA gene 99876958 99919600 4891.0 - 0 ENSG00000146833.15 protein_coding TRIM4 1 OTTHUMG00000156648.1 overlapping_locus +56005 chr7 HAVANA gene 99923269 99929620 1116.0 - 0 ENSG00000176402.5 protein_coding GJC3 2 OTTHUMG00000156649.1 +56006 chr7 ENSEMBL gene 99936610 99936711 102.0 + 0 ENSG00000199711.1 misc_RNA RF00019 3 +56007 chr7 HAVANA gene 99929392 99948620 680.0 + 0 ENSG00000237640.1 antisense AC004522.2 1 OTTHUMG00000156511.1 ncRNA_host +56008 chr7 ENSEMBL gene 99952033 99952158 126.0 + 0 ENSG00000222966.1 snoRNA RF00561 3 +56009 chr7 HAVANA gene 99966720 99976157 2699.0 - 0 ENSG00000160862.12 protein_coding AZGP1 2 OTTHUMG00000023066.4 +56010 chr7 HAVANA gene 99980762 99987535 1735.0 + 0 ENSG00000214313.8 transcribed_unprocessed_pseudogene AZGP1P1 2 OTTHUMG00000156513.2 +56011 chr7 HAVANA gene 99992397 99993050 654.0 + 0 ENSG00000235713.1 unprocessed_pseudogene AC004522.1 2 OTTHUMG00000156512.1 +56012 chr7 HAVANA gene 100015572 100041689 10319.0 + 0 ENSG00000106261.16 protein_coding ZKSCAN1 2 OTTHUMG00000156534.3 +56013 chr7 HAVANA gene 100049774 100065038 2140.0 + 0 ENSG00000166529.14 protein_coding ZSCAN21 2 OTTHUMG00000154583.6 +56014 chr7 HAVANA gene 100064033 100082548 5424.0 - 0 ENSG00000166526.16 protein_coding ZNF3 1 OTTHUMG00000154596.75 +56015 chr7 HAVANA gene 100088954 100092200 2807.0 + 0 ENSG00000168090.9 protein_coding COPS6 2 OTTHUMG00000154632.8 +56016 chr7 ENSEMBL gene 100093560 100093643 84.0 - 0 ENSG00000207547.1 miRNA MIR25 3 +56017 chr7 ENSEMBL gene 100093768 100093847 80.0 - 0 ENSG00000207757.1 miRNA MIR93 3 +56018 chr7 ENSEMBL gene 100093993 100094074 82.0 - 0 ENSG00000208036.1 miRNA MIR106B 3 +56019 chr7 HAVANA gene 100092728 100101940 4386.0 - 0 ENSG00000166508.17 protein_coding MCM7 2 OTTHUMG00000154671.9 ncRNA_host +56020 chr7 HAVANA gene 100101549 100110345 4722.0 + 0 ENSG00000221838.9 protein_coding AP4M1 1 OTTHUMG00000154722.107 +56021 chr7 HAVANA gene 100107070 100119841 4086.0 - 0 ENSG00000106290.14 protein_coding TAF6 1 OTTHUMG00000154771.11 overlapping_locus +56022 chr7 HAVANA gene 100119613 100125511 2475.0 + 0 ENSG00000166997.7 protein_coding CNPY4 2 OTTHUMG00000154817.7 +56023 chr7 HAVANA gene 100115214 100127139 572.0 - 0 ENSG00000242798.1 antisense AC073842.2 2 OTTHUMG00000159264.1 overlapping_locus +56024 chr7 HAVANA gene 100126694 100128498 1571.0 + 0 ENSG00000214309.4 protein_coding MBLAC1 2 OTTHUMG00000154846.5 +56025 chr7 HAVANA gene 100130964 100140439 342.0 + 0 ENSG00000235077.1 antisense AC073842.1 2 OTTHUMG00000154845.1 +56026 chr7 HAVANA gene 100139629 100140682 735.0 - 0 ENSG00000214142.2 processed_pseudogene RPL7P60 1 OTTHUMG00000154844.1 pseudo_consens +56027 chr7 HAVANA gene 100148907 100155944 1936.0 + 0 ENSG00000188186.10 protein_coding LAMTOR4 2 OTTHUMG00000154854.8 +56028 chr7 ENSEMBL gene 100156605 100156669 65.0 - 0 ENSG00000284518.1 miRNA MIR4658 3 +56029 chr7 HAVANA gene 100154420 100158715 3255.0 - 0 ENSG00000146826.16 protein_coding C7orf43 2 OTTHUMG00000154862.6 ncRNA_host +56030 chr7 HAVANA gene 100159244 100168750 3397.0 - 0 ENSG00000197093.10 protein_coding GAL3ST4 2 OTTHUMG00000154885.5 +56031 chr7 HAVANA gene 100169606 100177372 3828.0 - 0 ENSG00000213420.7 protein_coding GPC2 2 OTTHUMG00000154894.4 +56032 chr7 HAVANA gene 100177563 100221488 8583.0 + 0 ENSG00000066923.17 protein_coding STAG3 2 OTTHUMG00000155183.16 overlapping_locus +56033 chr7 HAVANA gene 100218241 100221490 1984.0 + 0 ENSG00000213413.2 protein_coding PVRIG 2 OTTHUMG00000156798.3 overlapping_locus +56034 chr7 HAVANA gene 100200653 100272232 4874.0 - 0 ENSG00000239521.8 protein_coding CASTOR3 1 OTTHUMG00000155289.7 +56035 chr7 HAVANA gene 100307702 100322196 4131.0 + 0 ENSG00000214300.7 protein_coding SPDYE3 2 OTTHUMG00000155462.3 +56036 chr7 ENSEMBL gene 100330777 100330877 101.0 - 0 ENSG00000201913.1 misc_RNA RF00019 3 +56037 chr7 HAVANA gene 100320992 100341908 1228.0 - 0 ENSG00000078319.9 unprocessed_pseudogene PMS2P1 2 OTTHUMG00000156885.2 +56038 chr7 HAVANA gene 100336079 100351900 2804.0 + 0 ENSG00000242294.6 transcribed_unprocessed_pseudogene STAG3L5P 2 OTTHUMG00000156884.1 overlapping_locus +56039 chr7 HAVANA gene 100352360 100353692 978.0 + 0 ENSG00000235333.3 transcribed_unprocessed_pseudogene PVRIG2P 2 OTTHUMG00000156886.1 overlapping_locus +56040 chr7 ENSEMBL gene 100356651 100356721 71.0 + 0 ENSG00000284012.1 miRNA MIR6840 3 +56041 chr7 HAVANA gene 100352176 100367733 5764.0 + 0 ENSG00000121716.20 protein_coding PILRB 2 OTTHUMG00000155363.11 ncRNA_host,overlapping_locus +56042 chr7 HAVANA gene 100336104 100367831 3816.0 + 0 ENSG00000272752.6 processed_transcript STAG3L5P-PVRIG2P-PILRB 2 OTTHUMG00000186252.1 ncRNA_host,overlapping_locus +56043 chr7 HAVANA gene 100367530 100400099 2006.0 + 0 ENSG00000085514.15 protein_coding PILRA 2 OTTHUMG00000155248.6 overlapping_locus +56044 chr7 HAVANA gene 100400826 100428992 3318.0 - 0 ENSG00000078487.17 protein_coding ZCWPW1 1 OTTHUMG00000159537.2 +56045 chr7 HAVANA gene 100428790 100434126 3420.0 + 0 ENSG00000146834.13 protein_coding MEPCE 1 OTTHUMG00000155255.3 +56046 chr7 HAVANA gene 100435257 100436510 333.0 + 0 ENSG00000241357.1 antisense AC092849.2 2 OTTHUMG00000159538.1 overlapping_locus +56047 chr7 HAVANA gene 100435282 100436565 1187.0 - 0 ENSG00000160813.6 protein_coding PPP1R35 2 OTTHUMG00000159540.2 +56048 chr7 HAVANA gene 100436204 100438504 303.0 + 0 ENSG00000240211.1 antisense AC092849.1 2 OTTHUMG00000159539.1 overlapping_locus +56049 chr7 HAVANA gene 100456615 100464271 1191.0 - 0 ENSG00000185955.4 protein_coding C7orf61 2 OTTHUMG00000150234.3 overlapping_locus +56050 chr7 HAVANA gene 100463359 100479279 3715.0 - 0 ENSG00000166925.8 protein_coding TSC22D4 1 OTTHUMG00000150233.2 overlapping_locus +56051 chr7 HAVANA gene 100483927 100494799 3586.0 + 0 ENSG00000166924.8 protein_coding NYAP1 2 OTTHUMG00000155290.3 +56052 chr7 HAVANA gene 100509717 100519926 570.0 + 0 ENSG00000225807.1 lincRNA AC069281.1 2 OTTHUMG00000156028.1 +56053 chr7 ENSEMBL gene 100530362 100530659 298.0 - 0 ENSG00000242101.3 misc_RNA RN7SL416P 3 +56054 chr7 HAVANA gene 100539211 100568219 5478.0 + 0 ENSG00000106351.12 protein_coding AGFG2 2 OTTHUMG00000156029.1 +56055 chr7 HAVANA gene 100570131 100571136 1006.0 + 0 ENSG00000184414.2 processed_pseudogene IRS3P 2 OTTHUMG00000156030.1 +56056 chr7 HAVANA gene 100572228 100573820 1388.0 - 0 ENSG00000205307.11 protein_coding SAP25 2 OTTHUMG00000187472.3 overlapping_locus +56057 chr7 HAVANA gene 100572232 100578700 4401.0 - 0 ENSG00000274272.1 processed_transcript AC069281.2 2 OTTHUMG00000187473.1 overlapping_locus +56058 chr7 HAVANA gene 100574011 100586153 6838.0 - 0 ENSG00000077454.15 protein_coding LRCH4 1 OTTHUMG00000159544.1 overlapping_locus +56059 chr7 HAVANA gene 100583982 100601117 3353.0 + 0 ENSG00000106336.12 protein_coding FBXO24 1 OTTHUMG00000159543.4 +56060 chr7 HAVANA gene 100589402 100604206 2705.0 - 0 ENSG00000224729.5 antisense PCOLCE-AS1 1 OTTHUMG00000156674.2 +56061 chr7 HAVANA gene 100602177 100608175 3532.0 + 0 ENSG00000106333.12 protein_coding PCOLCE 2 OTTHUMG00000156675.1 +56062 chr7 HAVANA gene 100612102 100615384 1726.0 + 0 ENSG00000106330.11 protein_coding MOSPD3 2 OTTHUMG00000159599.2 +56063 chr7 HAVANA gene 100620416 100642779 5065.0 - 0 ENSG00000106327.12 protein_coding TFR2 2 OTTHUMG00000159598.4 +56064 chr7 HAVANA gene 100643097 100656461 2389.0 - 0 ENSG00000077080.9 protein_coding ACTL6B 1 OTTHUMG00000159661.3 +56065 chr7 HAVANA gene 100673531 100679174 2857.0 + 0 ENSG00000172354.9 protein_coding GNB2 2 OTTHUMG00000137419.5 +56066 chr7 HAVANA gene 100679507 100694037 6917.0 - 0 ENSG00000146830.10 protein_coding GIGYF1 2 OTTHUMG00000157036.4 +56067 chr7 HAVANA gene 100706053 100707495 988.0 + 0 ENSG00000172336.4 protein_coding POP7 2 OTTHUMG00000044311.3 +56068 chr7 HAVANA gene 100720800 100723700 1330.0 + 0 ENSG00000130427.2 protein_coding EPO 2 OTTHUMG00000152121.1 +56069 chr7 HAVANA gene 100733626 100797797 8841.0 + 0 ENSG00000146839.18 protein_coding ZAN 2 OTTHUMG00000157037.5 +56070 chr7 ENSEMBL gene 100821027 100821264 238.0 - 0 ENSG00000263672.2 misc_RNA RN7SL750P 3 +56071 chr7 HAVANA gene 100802565 100827521 6435.0 - 0 ENSG00000196411.9 protein_coding EPHB4 2 OTTHUMG00000157040.1 ncRNA_host +56072 chr7 HAVANA gene 100837314 100852616 369.0 - 0 ENSG00000236305.1 antisense SLC12A9-AS1 2 OTTHUMG00000157041.1 +56073 chr7 HAVANA gene 100826820 100867009 8894.0 + 0 ENSG00000146828.17 protein_coding SLC12A9 1 OTTHUMG00000156045.3 +56074 chr7 ENSEMBL gene 100868036 100868107 72.0 + 0 ENSG00000283821.1 miRNA MIR6875 3 +56075 chr7 HAVANA gene 100867138 100873454 2802.0 + 0 ENSG00000087077.13 protein_coding TRIP6 2 OTTHUMG00000157029.4 ncRNA_host +56076 chr7 HAVANA gene 100875111 100888664 4588.0 + 0 ENSG00000087087.19 protein_coding SRRT 1 OTTHUMG00000157031.6 +56077 chr7 HAVANA gene 100888723 100889718 996.0 - 0 ENSG00000176125.4 protein_coding UFSP1 2 OTTHUMG00000159662.1 +56078 chr7 HAVANA gene 100889994 100896974 3731.0 - 0 ENSG00000087085.14 protein_coding ACHE 2 OTTHUMG00000157033.7 +56079 chr7 ENSEMBL gene 100906291 100906572 282.0 - 0 ENSG00000239825.3 misc_RNA RN7SL549P 3 +56080 chr7 HAVANA gene 100928370 100928540 171.0 + 0 ENSG00000235926.1 processed_pseudogene RPS29P15 1 OTTHUMG00000157035.1 pseudo_consens +56081 chr7 HAVANA gene 100963828 100968124 2555.0 - 0 ENSG00000274993.1 antisense AC254629.1 2 OTTHUMG00000157043.3 +56082 chr7 HAVANA gene 100949555 100968346 11374.0 + 0 ENSG00000169894.17 protein_coding MUC3A 2 OTTHUMG00000157038.5 +56083 chr7 HAVANA gene 101014320 101017608 407.0 - 0 ENSG00000227053.1 antisense AC105446.1 1 OTTHUMG00000157034.1 +56084 chr7 HAVANA gene 100969623 101018949 17130.0 + 0 ENSG00000205277.9 protein_coding MUC12 2 OTTHUMG00000157042.1 +56085 chr7 ENSEMBL gene 101058299 101058567 269.0 + 0 ENSG00000222636.1 misc_RNA RN7SKP54 3 +56086 chr7 HAVANA gene 101020072 101058745 14579.0 + 0 ENSG00000169876.13 protein_coding MUC17 2 OTTHUMG00000157030.2 ncRNA_host +56087 chr7 HAVANA gene 101085439 101097967 11173.0 + 0 ENSG00000169871.12 protein_coding TRIM56 2 OTTHUMG00000157032.3 +56088 chr7 HAVANA gene 101127089 101139266 3190.0 + 0 ENSG00000106366.8 protein_coding SERPINE1 1 OTTHUMG00000157107.2 +56089 chr7 ENSEMBL gene 101159473 101159555 83.0 + 0 ENSG00000264425.1 miRNA MIR4653 3 +56090 chr7 HAVANA gene 101154400 101161596 1756.0 + 0 ENSG00000106367.14 protein_coding AP1S1 1 OTTHUMG00000157103.4 ncRNA_host +56091 chr7 HAVANA gene 101162509 101165593 2704.0 - 0 ENSG00000128564.6 protein_coding VGF 2 OTTHUMG00000157109.2 +56092 chr7 HAVANA gene 101170493 101180276 3871.0 - 0 ENSG00000167011.8 protein_coding NAT16 2 OTTHUMG00000157110.2 +56093 chr7 HAVANA gene 101195007 101201038 2436.0 - 0 ENSG00000106384.11 protein_coding MOGAT3 2 OTTHUMG00000023328.4 +56094 chr7 HAVANA gene 101201809 101203526 744.0 - 0 ENSG00000205267.5 unprocessed_pseudogene DGAT2L7P 2 OTTHUMG00000183892.1 +56095 chr7 HAVANA gene 101203614 101204495 882.0 - 0 ENSG00000213394.3 processed_pseudogene RPSAP46 1 OTTHUMG00000157104.3 pseudo_consens +56096 chr7 HAVANA gene 101205977 101218420 5671.0 - 0 ENSG00000106397.11 protein_coding PLOD3 2 OTTHUMG00000157111.4 +56097 chr7 HAVANA gene 101217668 101224190 5510.0 + 0 ENSG00000106400.11 protein_coding ZNHIT1 2 OTTHUMG00000157113.1 +56098 chr7 HAVANA gene 101232092 101238820 2893.0 - 0 ENSG00000106404.13 protein_coding CLDN15 1 OTTHUMG00000150512.4 +56099 chr7 HAVANA gene 101239458 101252316 1795.0 - 0 ENSG00000214253.8 protein_coding FIS1 1 OTTHUMG00000157106.3 +56100 chr7 ENSEMBL gene 101269938 101270041 104.0 - 0 ENSG00000207454.1 snRNA RNU6-1104P 3 +56101 chr7 HAVANA gene 101273322 101273715 394.0 + 0 ENSG00000278683.1 unprocessed_pseudogene AC006329.2 2 OTTHUMG00000187690.1 +56102 chr7 HAVANA gene 101287482 101289771 345.0 - 0 ENSG00000214252.4 unprocessed_pseudogene AZGP1P2 2 OTTHUMG00000157108.1 +56103 chr7 HAVANA gene 101299578 101301346 867.0 + 0 ENSG00000232301.2 lincRNA LNCPRESS1 1 OTTHUMG00000157112.2 +56104 chr7 HAVANA gene 101308346 101310985 705.0 + 0 ENSG00000232445.1 antisense AC006329.1 2 OTTHUMG00000157105.1 +56105 chr7 HAVANA gene 101313367 101321823 4132.0 - 0 ENSG00000128581.15 protein_coding IFT22 2 OTTHUMG00000157136.2 +56106 chr7 HAVANA gene 101388868 101389080 213.0 - 0 ENSG00000233683.1 processed_pseudogene AC004965.1 2 OTTHUMG00000157138.1 +56107 chr7 HAVANA gene 101362820 101559024 3156.0 + 0 ENSG00000160963.13 protein_coding COL26A1 2 OTTHUMG00000150033.5 +56108 chr7 HAVANA gene 101562779 101569006 2641.0 - 0 ENSG00000233123.1 lincRNA LINC01007 2 OTTHUMG00000157139.2 +56109 chr7 HAVANA gene 101613325 101629296 1009.0 - 0 ENSG00000106436.6 protein_coding MYL10 2 OTTHUMG00000157137.3 +56110 chr7 HAVANA gene 101822247 101824729 622.0 - 0 ENSG00000259294.1 antisense AC005096.1 2 OTTHUMG00000172408.1 +56111 chr7 HAVANA gene 101960116 101961894 1779.0 + 0 ENSG00000272219.1 sense_intronic AC005072.1 2 OTTHUMG00000185570.1 overlapping_locus +56112 chr7 HAVANA gene 102153355 102154463 801.0 - 0 ENSG00000261535.1 antisense AC005086.1 2 OTTHUMG00000174510.1 +56113 chr7 ENSEMBL gene 102161120 102161337 213.0 - 0 ENSG00000280404.1 pseudogene AC005086.4 3 +56114 chr7 ENSEMBL gene 102186819 102187039 219.0 - 0 ENSG00000280004.1 pseudogene AC005086.3 3 +56115 chr7 ENSEMBL gene 102188599 102188828 228.0 - 0 ENSG00000279724.1 pseudogene AC005086.2 3 +56116 chr7 ENSEMBL gene 102194076 102194164 89.0 - 0 ENSG00000252824.1 snoRNA RF00554 3 +56117 chr7 HAVANA gene 102264706 102264979 274.0 - 0 ENSG00000278586.1 processed_pseudogene AC005088.1 2 OTTHUMG00000187691.1 +56118 chr7 HAVANA gene 101815904 102283958 17789.0 + 0 ENSG00000257923.10 protein_coding CUX1 1 OTTHUMG00000157129.13 overlapping_locus +56119 chr7 ENSEMBL gene 102293103 102293187 85.0 + 0 ENSG00000264675.1 miRNA MIR4285 3 +56120 chr7 HAVANA gene 102285091 102321711 2384.0 + 0 ENSG00000160999.10 protein_coding SH2B2 2 OTTHUMG00000150652.7 ncRNA_host +56121 chr7 HAVANA gene 102327256 102329530 331.0 - 0 ENSG00000170409.7 unprocessed_pseudogene AC091390.1 2 OTTHUMG00000157127.2 +56122 chr7 ENSEMBL gene 102336869 102336970 102.0 + 0 ENSG00000200552.1 misc_RNA RF00019 3 +56123 chr7 HAVANA gene 102337316 102339115 374.0 + 0 ENSG00000228546.2 unprocessed_pseudogene AC091390.2 2 OTTHUMG00000157128.1 +56124 chr7 HAVANA gene 102347206 102356444 1691.0 - 0 ENSG00000260097.2 protein_coding SPDYE6 2 OTTHUMG00000157126.3 +56125 chr7 HAVANA gene 102364162 102380633 740.0 + 0 ENSG00000239969.5 transcribed_unprocessed_pseudogene AC091390.4 2 OTTHUMG00000157721.1 overlapping_locus +56126 chr7 HAVANA gene 102380465 102382737 338.0 - 0 ENSG00000239486.1 unprocessed_pseudogene AC091390.3 2 OTTHUMG00000157265.2 +56127 chr7 ENSEMBL gene 102405742 102405855 114.0 - 0 ENSG00000221510.1 miRNA MIR548O 3 +56128 chr7 HAVANA gene 102363872 102426676 3696.0 + 0 ENSG00000128563.13 protein_coding PRKRIP1 1 OTTHUMG00000157717.1 overlapping_locus +56129 chr7 HAVANA gene 102426818 102434780 541.0 - 0 ENSG00000239480.1 antisense AC073517.1 1 OTTHUMG00000157724.1 +56130 chr7 HAVANA gene 102433106 102456821 11103.0 + 0 ENSG00000160991.15 protein_coding ORAI2 2 OTTHUMG00000157722.3 +56131 chr7 HAVANA gene 102456238 102464876 2312.0 - 0 ENSG00000160993.3 protein_coding ALKBH4 2 OTTHUMG00000157720.1 +56132 chr7 ENSEMBL gene 102465742 102465826 85.0 + 0 ENSG00000284176.1 miRNA MIR5090 3 +56133 chr7 ENSEMBL gene 102471469 102471531 63.0 + 0 ENSG00000284596.1 miRNA MIR4467 3 +56134 chr7 HAVANA gene 102464929 102473168 5926.0 + 0 ENSG00000161036.12 protein_coding LRWD1 2 OTTHUMG00000157718.16 ncRNA_host +56135 chr7 HAVANA gene 102473118 102478907 1355.0 - 0 ENSG00000005075.15 protein_coding POLR2J 2 OTTHUMG00000150387.1 +56136 chr7 HAVANA gene 102482445 102517781 4840.0 - 0 ENSG00000170667.14 protein_coding RASA4B 2 OTTHUMG00000022944.11 overlapping_locus +56137 chr7 HAVANA gene 102483344 102543764 3569.0 - 0 ENSG00000272949.1 protein_coding AC093668.2 2 OTTHUMG00000186380.2 overlapping_locus +56138 chr7 HAVANA gene 102538417 102543849 1005.0 - 0 ENSG00000284981.1 protein_coding AC093668.3 2 OTTHUMG00000192388.1 +56139 chr7 HAVANA gene 102551232 102562308 2072.0 + 0 ENSG00000205238.9 protein_coding SPDYE2 2 OTTHUMG00000150385.3 +56140 chr7 HAVANA gene 102562133 102572583 7195.0 - 0 ENSG00000285437.1 protein_coding POLR2J3 2 OTTHUMG00000192387.1 overlapping_locus +56141 chr7 HAVANA gene 102537918 102572653 3190.0 - 0 ENSG00000168255.20 protein_coding POLR2J3 2 OTTHUMG00000150384.11 overlapping_locus +56142 chr7 HAVANA gene 102541501 102592444 911.0 - 0 ENSG00000270249.1 protein_coding AC093668.1 2 OTTHUMG00000185154.3 overlapping_locus +56143 chr7 HAVANA gene 102573807 102616757 8077.0 - 0 ENSG00000105808.17 protein_coding RASA4 2 OTTHUMG00000150383.6 overlapping_locus +56144 chr7 HAVANA gene 102637025 102642791 1342.0 - 0 ENSG00000267368.1 protein_coding UPK3BL1 2 OTTHUMG00000165036.2 overlapping_locus +56145 chr7 HAVANA gene 102582523 102642869 3569.0 - 0 ENSG00000205236.6 protein_coding AC105052.1 2 OTTHUMG00000180800.1 overlapping_locus +56146 chr7 HAVANA gene 102650325 102661398 2072.0 + 0 ENSG00000173678.14 protein_coding SPDYE2B 2 OTTHUMG00000158393.3 +56147 chr7 HAVANA gene 102665368 102671629 2065.0 - 0 ENSG00000228049.7 protein_coding POLR2J2 2 OTTHUMG00000150388.6 overlapping_locus +56148 chr7 HAVANA gene 102637049 102671641 1598.0 - 0 ENSG00000267645.5 protein_coding AC105052.3 2 OTTHUMG00000180801.1 overlapping_locus +56149 chr7 HAVANA gene 102579104 102679295 1241.0 - 0 ENSG00000279168.2 sense_overlapping AC105052.4 2 OTTHUMG00000192193.1 overlapping_locus +56150 chr7 HAVANA gene 102681836 102690469 1199.0 - 0 ENSG00000233297.4 unprocessed_pseudogene RASA4DP 2 OTTHUMG00000157719.2 +56151 chr7 HAVANA gene 102755146 102755939 794.0 + 0 ENSG00000213385.3 processed_pseudogene AC105052.2 1 OTTHUMG00000157259.1 pseudo_consens,overlapping_locus +56152 chr7 HAVANA gene 102748971 102809225 2729.0 + 0 ENSG00000222011.8 protein_coding FAM185A 2 OTTHUMG00000154140.3 overlapping_locus +56153 chr7 ENSEMBL gene 102834605 102834708 104.0 + 0 ENSG00000252643.1 snRNA RNU6-1136P 3 +56154 chr7 ENSEMBL gene 102857450 102857755 306.0 + 0 ENSG00000238324.1 misc_RNA RN7SKP198 3 +56155 chr7 HAVANA gene 102912991 102944949 2674.0 + 0 ENSG00000128606.12 protein_coding LRRC17 1 OTTHUMG00000157210.3 +56156 chr7 HAVANA gene 102973437 102988856 1644.0 + 0 ENSG00000230257.2 protein_coding NFE4 2 OTTHUMG00000157208.3 +56157 chr7 HAVANA gene 103030104 103031354 333.0 + 0 ENSG00000236226.1 antisense AC073127.1 2 OTTHUMG00000157223.1 +56158 chr7 HAVANA gene 102813230 103074843 4009.0 - 0 ENSG00000161040.16 protein_coding FBXL13 1 OTTHUMG00000157224.3 +56159 chr7 HAVANA gene 103088664 103089610 947.0 - 0 ENSG00000233025.1 processed_pseudogene CRYZP1 1 OTTHUMG00000157207.1 pseudo_consens +56160 chr7 HAVANA gene 103074881 103099764 4580.0 + 0 ENSG00000170632.13 protein_coding ARMC10 2 OTTHUMG00000157201.3 +56161 chr7 HAVANA gene 103141349 103141939 591.0 - 0 ENSG00000224415.1 processed_pseudogene AC007683.1 1 OTTHUMG00000157209.1 pseudo_consens,overlapping_locus +56162 chr7 HAVANA gene 103099776 103149560 7561.0 - 0 ENSG00000161048.11 protein_coding NAPEPLD 2 OTTHUMG00000157204.2 overlapping_locus +56163 chr7 HAVANA gene 103152007 103152325 265.0 - 0 ENSG00000236848.2 processed_pseudogene RPL23AP95 1 OTTHUMG00000157203.1 pseudo_consens +56164 chr7 HAVANA gene 103161947 103162660 714.0 - 0 ENSG00000279482.1 TEC AC007683.2 2 OTTHUMG00000173140.1 +56165 chr7 HAVANA gene 103262000 103262311 312.0 + 0 ENSG00000237632.3 processed_pseudogene S100A11P1 1 OTTHUMG00000157211.1 pseudo_consens +56166 chr7 HAVANA gene 103175133 103280410 5580.0 - 0 ENSG00000170629.14 transcribed_unprocessed_pseudogene DPY19L2P2 2 OTTHUMG00000157200.1 +56167 chr7 HAVANA gene 103297422 103329511 4835.0 + 0 ENSG00000105819.13 protein_coding PMPCB 2 OTTHUMG00000157205.1 +56168 chr7 HAVANA gene 103312474 103344873 6564.0 - 0 ENSG00000105821.14 protein_coding DNAJC2 2 OTTHUMG00000157202.3 +56169 chr7 HAVANA gene 103348601 103348771 171.0 + 0 ENSG00000235354.1 processed_pseudogene RPS29P16 1 OTTHUMG00000157199.1 pseudo_consens,overlapping_locus +56170 chr7 HAVANA gene 103344254 103369395 3547.0 + 0 ENSG00000161057.11 protein_coding PSMC2 2 OTTHUMG00000157206.2 overlapping_locus +56171 chr7 ENSEMBL gene 103433461 103433561 101.0 - 0 ENSG00000251852.1 misc_RNA RF00019 3 +56172 chr7 ENSEMBL gene 103434994 103435092 99.0 - 0 ENSG00000252047.1 misc_RNA RF00019 3 +56173 chr7 HAVANA gene 103352730 103446177 3377.0 - 0 ENSG00000170615.14 protein_coding SLC26A5 1 OTTHUMG00000149911.2 ncRNA_host +56174 chr7 ENSEMBL gene 103484208 103484539 332.0 - 0 ENSG00000222386.1 misc_RNA RN7SKP86 3 +56175 chr7 HAVANA gene 103445207 103514007 2725.0 + 0 ENSG00000234715.1 antisense AC005064.1 2 OTTHUMG00000157225.1 +56176 chr7 HAVANA gene 103471784 103989516 12642.0 - 0 ENSG00000189056.13 protein_coding RELN 2 OTTHUMG00000157247.1 ncRNA_host +56177 chr7 HAVANA gene 104126341 104208047 3724.0 - 0 ENSG00000164815.10 protein_coding ORC5 2 OTTHUMG00000157275.1 +56178 chr7 HAVANA gene 104667749 104669576 1828.0 + 0 ENSG00000197258.5 processed_pseudogene EIF4BP6 1 OTTHUMG00000157274.1 pseudo_consens,overlapping_locus +56179 chr7 HAVANA gene 104738597 104804107 3039.0 - 0 ENSG00000226869.6 processed_transcript LHFPL3-AS1 2 OTTHUMG00000157276.2 +56180 chr7 HAVANA gene 104826336 104826796 461.0 + 0 ENSG00000237606.2 processed_pseudogene AC091286.1 1 OTTHUMG00000157281.1 pseudo_consens,overlapping_locus +56181 chr7 HAVANA gene 104328656 104907232 1900.0 + 0 ENSG00000187416.11 protein_coding LHFPL3 2 OTTHUMG00000157273.1 overlapping_locus +56182 chr7 ENSEMBL gene 104911928 104912193 266.0 + 0 ENSG00000243352.3 misc_RNA RN7SL8P 3 +56183 chr7 HAVANA gene 104894628 104926645 2375.0 - 0 ENSG00000225329.3 processed_transcript LHFPL3-AS2 2 OTTHUMG00000157279.2 +56184 chr7 HAVANA gene 104941063 104962334 1034.0 + 0 ENSG00000237513.1 lincRNA AC007384.1 1 OTTHUMG00000157277.1 +56185 chr7 HAVANA gene 104950315 105013044 1131.0 - 0 ENSG00000228393.3 antisense LINC01004 1 OTTHUMG00000157278.1 +56186 chr7 HAVANA gene 105013425 105014321 736.0 - 0 ENSG00000239569.3 antisense KMT2E-AS1 2 OTTHUMG00000157280.1 +56187 chr7 HAVANA gene 105102838 105105483 2646.0 - 0 ENSG00000272918.1 antisense AC005070.3 2 OTTHUMG00000186296.1 +56188 chr7 HAVANA gene 105014179 105114361 9231.0 + 0 ENSG00000005483.20 protein_coding KMT2E 2 OTTHUMG00000157403.4 +56189 chr7 HAVANA gene 105189190 105189814 365.0 + 0 ENSG00000270764.1 processed_pseudogene AC005070.1 1 OTTHUMG00000184442.1 pseudo_consens +56190 chr7 HAVANA gene 105204600 105204859 260.0 + 0 ENSG00000271482.1 processed_pseudogene AC005070.2 1 OTTHUMG00000184440.1 pseudo_consens +56191 chr7 HAVANA gene 105244652 105244970 319.0 + 0 ENSG00000213361.2 processed_pseudogene AC004884.1 1 OTTHUMG00000157260.1 pseudo_consens +56192 chr7 HAVANA gene 105301522 105302086 565.0 + 0 ENSG00000244490.1 processed_pseudogene RWDD4P1 1 OTTHUMG00000157404.1 pseudo_consens +56193 chr7 HAVANA gene 105304277 105306642 546.0 + 0 ENSG00000242154.1 antisense AC004884.2 1 OTTHUMG00000157398.1 +56194 chr7 ENSEMBL gene 105332790 105332896 107.0 + 0 ENSG00000201179.1 snRNA RNU6-1322P 3 +56195 chr7 HAVANA gene 105110704 105399308 6341.0 - 0 ENSG00000135250.16 protein_coding SRPK2 2 OTTHUMG00000157405.2 +56196 chr7 HAVANA gene 105439661 105522267 4421.0 - 0 ENSG00000091127.13 protein_coding PUS7 2 OTTHUMG00000157399.2 +56197 chr7 HAVANA gene 105530209 105530671 463.0 + 0 ENSG00000223886.3 processed_pseudogene AC073073.1 1 OTTHUMG00000157402.1 pseudo_consens +56198 chr7 HAVANA gene 105532085 105567677 3655.0 + 0 ENSG00000135249.7 protein_coding RINT1 1 OTTHUMG00000157400.2 +56199 chr7 HAVANA gene 105571083 105573660 2578.0 + 0 ENSG00000272604.1 antisense AC073073.2 2 OTTHUMG00000186297.1 +56200 chr7 HAVANA gene 105582258 105583256 999.0 - 0 ENSG00000231167.3 processed_pseudogene YBX1P2 1 OTTHUMG00000157401.1 pseudo_consens,overlapping_locus +56201 chr7 HAVANA gene 105565120 105600875 2578.0 - 0 ENSG00000185055.10 protein_coding EFCAB10 2 OTTHUMG00000157397.2 overlapping_locus +56202 chr7 HAVANA gene 105819492 105820101 610.0 + 0 ENSG00000226624.1 processed_pseudogene AC005099.1 1 OTTHUMG00000157261.1 pseudo_consens +56203 chr7 HAVANA gene 105605067 105876604 8295.0 - 0 ENSG00000146776.14 protein_coding ATXN7L1 1 OTTHUMG00000157521.3 +56204 chr7 HAVANA gene 105876796 106033773 7087.0 + 0 ENSG00000128536.15 protein_coding CDHR3 2 OTTHUMG00000157520.2 +56205 chr7 HAVANA gene 106035798 106036431 634.0 + 0 ENSG00000280439.1 TEC AC004836.1 2 OTTHUMG00000157519.1 +56206 chr7 HAVANA gene 106090503 106112576 2804.0 - 0 ENSG00000008282.8 protein_coding SYPL1 1 OTTHUMG00000157587.2 +56207 chr7 HAVANA gene 106125371 106126700 1330.0 + 0 ENSG00000242562.1 processed_pseudogene DCAF13P1 1 OTTHUMG00000157588.1 pseudo_consens +56208 chr7 ENSEMBL gene 106208167 106208267 101.0 + 0 ENSG00000201796.1 snRNA RNU6-392P 3 +56209 chr7 HAVANA gene 106285480 106286326 847.0 + 0 ENSG00000273320.1 antisense AC007032.1 2 OTTHUMG00000186298.1 +56210 chr7 HAVANA gene 106248285 106286326 9049.0 - 0 ENSG00000105835.11 protein_coding NAMPT 2 OTTHUMG00000140388.4 +56211 chr7 HAVANA gene 106315225 106315743 519.0 + 0 ENSG00000243438.1 processed_pseudogene LARP1BP2 1 OTTHUMG00000157589.1 pseudo_consens +56212 chr7 HAVANA gene 106569876 106598908 1770.0 - 0 ENSG00000267052.2 lincRNA AC005050.1 2 OTTHUMG00000182225.2 overlapping_locus +56213 chr7 HAVANA gene 106656765 106660996 4232.0 - 0 ENSG00000253276.2 protein_coding CCDC71L 2 OTTHUMG00000164150.1 overlapping_locus +56214 chr7 HAVANA gene 106372251 106770207 2082.0 - 0 ENSG00000243797.6 sense_overlapping AC004917.1 2 OTTHUMG00000157591.2 overlapping_locus +56215 chr7 ENSEMBL gene 106781600 106781715 116.0 - 0 ENSG00000251978.1 rRNA_pseudogene RNA5SP236 3 +56216 chr7 HAVANA gene 106774955 106838480 4271.0 + 0 ENSG00000228742.10 lincRNA LINC02577 2 OTTHUMG00000157590.5 +56217 chr7 HAVANA gene 106865278 106907145 5930.0 + 0 ENSG00000105851.10 protein_coding PIK3CG 2 OTTHUMG00000157641.3 +56218 chr7 HAVANA gene 107066591 107133733 2190.0 - 0 ENSG00000243193.4 processed_transcript AC006387.1 2 OTTHUMG00000157643.3 +56219 chr7 HAVANA gene 107044649 107161811 4318.0 + 0 ENSG00000005249.12 protein_coding PRKAR2B 2 OTTHUMG00000137418.1 +56220 chr7 HAVANA gene 107192559 107193300 742.0 - 0 ENSG00000272072.1 antisense AC004492.1 2 OTTHUMG00000185707.1 +56221 chr7 HAVANA gene 107168961 107202529 6351.0 + 0 ENSG00000105856.13 protein_coding HBP1 2 OTTHUMG00000157642.4 +56222 chr7 HAVANA gene 107450083 107450362 280.0 + 0 ENSG00000228341.1 processed_pseudogene AC002381.1 1 OTTHUMG00000157262.1 pseudo_consens +56223 chr7 HAVANA gene 107470018 107475659 3683.0 + 0 ENSG00000172209.5 protein_coding GPR22 2 OTTHUMG00000154902.2 +56224 chr7 HAVANA gene 107201555 107564514 8467.0 - 0 ENSG00000164597.13 protein_coding COG5 2 OTTHUMG00000023895.5 +56225 chr7 HAVANA gene 107563484 107578464 5439.0 + 0 ENSG00000105865.10 protein_coding DUS4L 2 OTTHUMG00000154763.4 +56226 chr7 HAVANA gene 107579557 107580057 501.0 - 0 ENSG00000272854.1 antisense AC004839.1 2 OTTHUMG00000186299.1 +56227 chr7 ENSEMBL gene 107603363 107603507 145.0 + 0 ENSG00000238832.1 snoRNA RF01233 3 +56228 chr7 HAVANA gene 107579977 107629170 8409.0 + 0 ENSG00000075790.10 protein_coding BCAP29 1 OTTHUMG00000154770.15 ncRNA_host,overlapping_locus +56229 chr7 HAVANA gene 107628553 107629550 998.0 + 0 ENSG00000250474.2 processed_pseudogene WBP1LP2 1 OTTHUMG00000154776.2 pseudo_consens,overlapping_locus +56230 chr7 HAVANA gene 107642765 107643023 259.0 - 0 ENSG00000225935.1 processed_pseudogene BANF1P5 1 OTTHUMG00000154778.1 pseudo_consens +56231 chr7 HAVANA gene 107653968 107662151 5029.0 - 0 ENSG00000233705.6 antisense SLC26A4-AS1 2 OTTHUMG00000154777.4 +56232 chr7 HAVANA gene 107660635 107717809 5800.0 + 0 ENSG00000091137.12 protein_coding SLC26A4 2 OTTHUMG00000154807.5 +56233 chr7 HAVANA gene 107742817 107744581 984.0 - 0 ENSG00000241764.3 antisense AC002467.1 2 OTTHUMG00000154805.3 +56234 chr7 HAVANA gene 107743697 107761667 5481.0 + 0 ENSG00000105879.11 protein_coding CBLL1 1 OTTHUMG00000154809.13 +56235 chr7 HAVANA gene 107765467 107803225 3382.0 - 0 ENSG00000091138.12 protein_coding SLC26A3 2 OTTHUMG00000154812.2 +56236 chr7 HAVANA gene 107808734 107809568 835.0 + 0 ENSG00000229626.1 processed_pseudogene PIGCP2 2 OTTHUMG00000154814.1 +56237 chr7 HAVANA gene 107890970 107931730 5299.0 + 0 ENSG00000091140.13 protein_coding DLD 2 OTTHUMG00000154813.3 +56238 chr7 HAVANA gene 107942116 107942740 625.0 + 0 ENSG00000273055.1 antisense AC005046.1 2 OTTHUMG00000186301.1 +56239 chr7 ENSEMBL gene 107999791 107999982 192.0 - 0 ENSG00000238297.2 snoRNA RF00012 3 +56240 chr7 HAVANA gene 107923799 108003255 8140.0 - 0 ENSG00000091136.13 protein_coding LAMB1 1 OTTHUMG00000149966.3 ncRNA_host +56241 chr7 HAVANA gene 108023548 108130356 7016.0 - 0 ENSG00000091128.12 protein_coding LAMB4 2 OTTHUMG00000154874.5 +56242 chr7 HAVANA gene 108147623 108456717 8193.0 - 0 ENSG00000091129.19 protein_coding NRCAM 1 OTTHUMG00000154973.9 +56243 chr7 HAVANA gene 108510233 108510976 744.0 + 0 ENSG00000231006.1 processed_pseudogene RPL7P32 2 OTTHUMG00000157146.1 +56244 chr7 HAVANA gene 108470422 108569666 5668.0 - 0 ENSG00000135241.16 protein_coding PNPLA8 1 OTTHUMG00000154870.8 overlapping_locus +56245 chr7 HAVANA gene 108554543 108569750 4961.0 - 0 ENSG00000177683.13 protein_coding THAP5 1 OTTHUMG00000154951.2 overlapping_locus +56246 chr7 HAVANA gene 108569568 108574850 2837.0 + 0 ENSG00000128590.4 protein_coding DNAJB9 1 OTTHUMG00000154866.1 +56247 chr7 HAVANA gene 108598375 108614267 665.0 + 0 ENSG00000225647.1 lincRNA AC005487.1 2 OTTHUMG00000154871.1 +56248 chr7 HAVANA gene 108720608 108721601 994.0 - 0 ENSG00000270425.1 processed_pseudogene AC002487.1 1 OTTHUMG00000184512.1 pseudo_consens +56249 chr7 HAVANA gene 108883975 108884587 435.0 - 0 ENSG00000205174.4 lincRNA C7orf66 2 OTTHUMG00000154867.2 +56250 chr7 HAVANA gene 108900105 108905226 5122.0 - 0 ENSG00000279043.1 TEC AC004014.2 2 OTTHUMG00000187392.1 +56251 chr7 HAVANA gene 108909453 108952666 538.0 + 0 ENSG00000229603.1 lincRNA AC004014.1 2 OTTHUMG00000154865.1 +56252 chr7 HAVANA gene 108994031 108995029 999.0 - 0 ENSG00000227968.1 processed_pseudogene BUB3P1 1 OTTHUMG00000154869.1 pseudo_consens +56253 chr7 HAVANA gene 109322320 109326315 398.0 - 0 ENSG00000230941.1 lincRNA AC002386.1 2 OTTHUMG00000155012.1 +56254 chr7 HAVANA gene 109521981 109597166 388.0 - 0 ENSG00000234273.1 lincRNA AC073071.1 2 OTTHUMG00000155014.1 +56255 chr7 HAVANA gene 109660094 109660802 709.0 + 0 ENSG00000230192.1 processed_pseudogene AC073387.1 1 OTTHUMG00000155013.2 pseudo_consens +56256 chr7 HAVANA gene 109763574 109764357 784.0 + 0 ENSG00000271368.1 processed_pseudogene AC073387.2 1 OTTHUMG00000184438.1 pseudo_consens +56257 chr7 HAVANA gene 109959218 109960184 967.0 - 0 ENSG00000237064.1 processed_pseudogene EIF3IP1 1 OTTHUMG00000155015.1 pseudo_consens +56258 chr7 HAVANA gene 109998434 109999624 1191.0 - 0 ENSG00000232199.1 processed_pseudogene RPL3P8 1 OTTHUMG00000155017.1 pseudo_consens +56259 chr7 HAVANA gene 110215891 110216380 490.0 + 0 ENSG00000278424.1 unprocessed_pseudogene AC073114.1 2 OTTHUMG00000187692.1 +56260 chr7 HAVANA gene 110432239 110534754 495.0 - 0 ENSG00000226965.1 lincRNA AC092167.1 2 OTTHUMG00000155021.1 +56261 chr7 HAVANA gene 110724159 110725825 557.0 - 0 ENSG00000228540.1 sense_intronic AC073326.1 2 OTTHUMG00000155459.1 overlapping_locus +56262 chr7 HAVANA gene 111091006 111125454 3875.0 + 0 ENSG00000173114.12 protein_coding LRRN3 1 OTTHUMG00000155039.3 +56263 chr7 HAVANA gene 111394875 111395043 169.0 + 0 ENSG00000243621.1 processed_pseudogene AC003989.2 2 OTTHUMG00000155038.1 +56264 chr7 HAVANA gene 111411319 111411883 565.0 + 0 ENSG00000227948.4 processed_pseudogene AC003989.1 1 OTTHUMG00000155037.1 pseudo_consens +56265 chr7 HAVANA gene 110663051 111562517 3411.0 - 0 ENSG00000184903.9 protein_coding IMMP2L 1 OTTHUMG00000155023.8 overlapping_locus +56266 chr7 HAVANA gene 111808516 111821773 2494.0 + 0 ENSG00000225572.1 antisense DOCK4-AS1 2 OTTHUMG00000155078.2 +56267 chr7 ENSEMBL gene 111953653 111953765 113.0 - 0 ENSG00000222346.1 rRNA_pseudogene RNA5SP237 3 +56268 chr7 HAVANA gene 111971222 111971988 767.0 - 0 ENSG00000234358.1 processed_pseudogene AC003080.1 1 OTTHUMG00000155258.1 pseudo_consens,overlapping_locus +56269 chr7 HAVANA gene 111726110 112206411 11499.0 - 0 ENSG00000128512.20 protein_coding DOCK4 1 OTTHUMG00000155077.7 overlapping_locus +56270 chr7 ENSEMBL gene 112288623 112288952 330.0 + 0 ENSG00000202406.1 misc_RNA RN7SKP187 3 +56271 chr7 HAVANA gene 112206588 112343096 4014.0 + 0 ENSG00000198839.9 protein_coding ZNF277 2 OTTHUMG00000150209.4 ncRNA_host +56272 chr7 HAVANA gene 112372647 112373729 1083.0 + 0 ENSG00000230999.1 unprocessed_pseudogene MTND5P8 2 OTTHUMG00000155121.1 +56273 chr7 HAVANA gene 112373733 112374250 518.0 - 0 ENSG00000232922.1 unprocessed_pseudogene MTND6P24 2 OTTHUMG00000155123.1 overlapping_locus +56274 chr7 HAVANA gene 112374324 112375429 1106.0 + 0 ENSG00000236232.1 unprocessed_pseudogene MTCYBP24 2 OTTHUMG00000155120.1 +56275 chr7 HAVANA gene 112328189 112409623 707.0 - 0 ENSG00000226851.1 antisense AC004112.1 2 OTTHUMG00000155122.1 overlapping_locus +56276 chr7 HAVANA gene 112446164 112446375 212.0 - 0 ENSG00000180019.5 processed_pseudogene AC079741.1 1 OTTHUMG00000155191.1 pseudo_consens +56277 chr7 HAVANA gene 112422968 112481017 7489.0 + 0 ENSG00000006652.13 protein_coding IFRD1 1 OTTHUMG00000155124.7 overlapping_locus +56278 chr7 HAVANA gene 112480853 112491062 2592.0 + 0 ENSG00000181016.9 protein_coding LSMEM1 2 OTTHUMG00000155190.2 overlapping_locus +56279 chr7 HAVANA gene 112520488 112521670 866.0 + 0 ENSG00000182965.6 processed_pseudogene NPM1P14 1 OTTHUMG00000155193.1 pseudo_consens +56280 chr7 HAVANA gene 112622378 112708080 1188.0 + 0 ENSG00000223646.1 lincRNA AC002463.1 2 OTTHUMG00000155194.1 +56281 chr7 HAVANA gene 112735166 112738693 2027.0 - 0 ENSG00000225358.1 processed_pseudogene MIPEPP1 1 OTTHUMG00000155189.2 pseudo_consens +56282 chr7 HAVANA gene 112762382 112790592 7995.0 - 0 ENSG00000146802.12 protein_coding TMEM168 1 OTTHUMG00000155188.7 +56283 chr7 HAVANA gene 112819147 112939916 4138.0 - 0 ENSG00000164603.11 protein_coding BMT2 2 OTTHUMG00000155233.1 +56284 chr7 HAVANA gene 112954646 112995634 1001.0 - 0 ENSG00000234520.5 lincRNA HRAT17 2 OTTHUMG00000155236.1 +56285 chr7 HAVANA gene 113075124 113077181 2058.0 - 0 ENSG00000279288.1 TEC AC073346.2 2 OTTHUMG00000173364.1 +56286 chr7 HAVANA gene 113078331 113087778 7396.0 - 0 ENSG00000164604.12 protein_coding GPR85 2 OTTHUMG00000156933.4 +56287 chr7 HAVANA gene 113116718 113118613 1896.0 - 0 ENSG00000214194.8 protein_coding SMIM30 2 OTTHUMG00000154780.3 +56288 chr7 HAVANA gene 113100663 113146330 1084.0 + 0 ENSG00000225457.1 processed_transcript AC073346.1 1 OTTHUMG00000156934.1 +56289 chr7 HAVANA gene 113415689 113416322 634.0 + 0 ENSG00000270997.1 processed_pseudogene AC073137.1 1 OTTHUMG00000184435.1 pseudo_consens +56290 chr7 HAVANA gene 113451072 113451402 331.0 + 0 ENSG00000278894.1 TEC AC073348.1 2 OTTHUMG00000187174.1 +56291 chr7 HAVANA gene 113876777 114075920 4679.0 - 0 ENSG00000154415.7 protein_coding PPP1R3A 2 OTTHUMG00000156944.2 +56292 chr7 HAVANA gene 114297114 114297429 316.0 - 0 ENSG00000236580.1 processed_pseudogene AC073626.2 1 OTTHUMG00000156954.1 pseudo_consens +56293 chr7 HAVANA gene 114414244 114419875 582.0 - 0 ENSG00000224595.1 antisense AC073626.1 2 OTTHUMG00000133704.1 +56294 chr7 HAVANA gene 114560961 114561517 557.0 + 0 ENSG00000282859.1 sense_intronic AC003992.1 2 OTTHUMG00000191570.1 +56295 chr7 ENSEMBL gene 114613787 114613906 120.0 - 0 ENSG00000202334.1 rRNA_pseudogene RNA5SP238 3 +56296 chr7 ENSEMBL gene 114653345 114653455 111.0 + 0 ENSG00000272230.1 miRNA MIR3666 3 +56297 chr7 HAVANA gene 114086327 114693772 16152.0 + 0 ENSG00000128573.24 protein_coding FOXP2 2 OTTHUMG00000023131.17 ncRNA_host +56298 chr7 HAVANA gene 114922154 115019202 5252.0 + 0 ENSG00000135272.10 protein_coding MDFIC 2 OTTHUMG00000023647.9 +56299 chr7 HAVANA gene 115078958 115126314 1830.0 + 0 ENSG00000225535.6 lincRNA LINC01393 2 OTTHUMG00000065346.3 +56300 chr7 HAVANA gene 115136475 115137220 575.0 - 0 ENSG00000226962.1 processed_pseudogene RAC1P6 1 OTTHUMG00000065374.1 pseudo_consens,overlapping_locus +56301 chr7 ENSEMBL gene 115207894 115207996 103.0 - 0 ENSG00000199764.1 misc_RNA RF00019 3 +56302 chr7 HAVANA gene 115061537 115231355 565.0 - 0 ENSG00000233607.1 lincRNA LINC01392 2 OTTHUMG00000133696.1 ncRNA_host,overlapping_locus +56303 chr7 HAVANA gene 115503367 115504081 408.0 + 0 ENSG00000244565.1 processed_pseudogene AC073901.1 1 OTTHUMG00000158442.1 pseudo_consens +56304 chr7 ENSEMBL gene 115581315 115581442 128.0 - 0 ENSG00000202377.1 snoRNA SNORA25B 3 +56305 chr7 HAVANA gene 115647461 115676329 737.0 - 0 ENSG00000242072.1 lincRNA AC092590.1 2 OTTHUMG00000158448.1 +56306 chr7 HAVANA gene 115679345 115682618 1257.0 - 0 ENSG00000240973.1 lincRNA AC093714.1 2 OTTHUMG00000158447.1 +56307 chr7 HAVANA gene 115789729 115791049 763.0 + 0 ENSG00000243345.1 lincRNA AC093714.2 2 OTTHUMG00000158446.1 +56308 chr7 ENSEMBL gene 115833273 115833373 101.0 - 0 ENSG00000199224.1 misc_RNA RF00019 3 +56309 chr7 HAVANA gene 115935148 116159896 8644.0 - 0 ENSG00000105967.15 protein_coding TFEC 2 OTTHUMG00000023518.6 +56310 chr7 HAVANA gene 116209234 116211511 2278.0 - 0 ENSG00000279086.1 TEC AC073130.3 2 OTTHUMG00000158457.1 +56311 chr7 HAVANA gene 116210493 116258783 4280.0 + 0 ENSG00000135269.17 protein_coding TES 2 OTTHUMG00000023092.9 +56312 chr7 HAVANA gene 116275606 116286734 2560.0 - 0 ENSG00000237870.6 processed_transcript AC073130.1 2 OTTHUMG00000066051.2 overlapping_locus +56313 chr7 ENSEMBL gene 116320751 116321031 281.0 + 0 ENSG00000213167.3 misc_RNA RF00017 3 +56314 chr7 HAVANA gene 116237929 116327896 917.0 - 0 ENSG00000243243.5 antisense AC073130.2 2 OTTHUMG00000066049.3 overlapping_locus +56315 chr7 HAVANA gene 116238260 116499465 1213.0 - 0 ENSG00000237813.3 antisense AC002066.1 1 OTTHUMG00000066052.4 overlapping_locus +56316 chr7 HAVANA gene 116287380 116508541 6926.0 + 0 ENSG00000105971.14 protein_coding CAV2 1 OTTHUMG00000023414.11 ncRNA_host +56317 chr7 HAVANA gene 116542718 116551969 386.0 - 0 ENSG00000235427.1 antisense AC006159.1 2 OTTHUMG00000066050.1 +56318 chr7 HAVANA gene 116524785 116561184 4082.0 + 0 ENSG00000105974.11 protein_coding CAV1 1 OTTHUMG00000023413.8 +56319 chr7 HAVANA gene 116563594 116571234 692.0 - 0 ENSG00000243220.1 antisense AC006159.2 1 OTTHUMG00000066048.2 overlapping_locus +56320 chr7 HAVANA gene 116563594 116663829 1691.0 - 0 ENSG00000231210.3 lincRNA LINC01510 2 OTTHUMG00000064097.5 overlapping_locus +56321 chr7 HAVANA gene 116672390 116798386 7039.0 + 0 ENSG00000105976.14 protein_coding MET 1 OTTHUMG00000023299.9 +56322 chr7 HAVANA gene 116873454 116876376 1954.0 - 0 ENSG00000235945.1 processed_pseudogene AC002543.1 1 OTTHUMG00000033983.2 pseudo_consens +56323 chr7 ENSEMBL gene 116909877 116909964 88.0 - 0 ENSG00000252115.1 misc_RNA RF00019 3 +56324 chr7 HAVANA gene 116811070 116922049 8425.0 + 0 ENSG00000198898.13 protein_coding CAPZA2 2 OTTHUMG00000023185.14 +56325 chr7 ENSEMBL gene 116944286 116944414 129.0 - 0 ENSG00000222150.1 rRNA_pseudogene RNA5SP239 3 +56326 chr7 ENSEMBL gene 116952698 116952813 116.0 + 0 ENSG00000275359.1 misc_RNA RF02179 3 +56327 chr7 ENSEMBL gene 116953214 116953324 111.0 + 0 ENSG00000277583.1 misc_RNA RF02180 3 +56328 chr7 HAVANA gene 116952446 116954334 1889.0 - 0 ENSG00000227199.1 antisense ST7-AS1 2 OTTHUMG00000039524.1 +56329 chr7 ENSEMBL gene 116954480 116954679 200.0 + 0 ENSG00000273596.1 misc_RNA RF02187 3 +56330 chr7 ENSEMBL gene 116954983 116955154 172.0 + 0 ENSG00000273571.1 misc_RNA RF02188 3 +56331 chr7 ENSEMBL gene 116956431 116956723 293.0 + 0 ENSG00000276100.1 misc_RNA RF02189 3 +56332 chr7 ENSEMBL gene 116959593 116959805 213.0 + 0 ENSG00000274606.1 misc_RNA RF02190 3 +56333 chr7 HAVANA gene 116965846 116967472 459.0 - 0 ENSG00000228368.1 antisense AC106873.1 2 OTTHUMG00000150015.1 +56334 chr7 HAVANA gene 116972165 116972911 747.0 - 0 ENSG00000213050.5 processed_pseudogene TPM3P1 1 OTTHUMG00000033986.2 pseudo_consens +56335 chr7 ENSEMBL gene 117020211 117020319 109.0 + 0 ENSG00000283923.1 miRNA MIR6132 3 +56336 chr7 HAVANA gene 116953899 117098806 2664.0 + 0 ENSG00000214188.9 sense_intronic ST7-OT4 1 OTTHUMG00000063631.5 ncRNA_host,overlapping_locus +56337 chr7 ENSEMBL gene 117117912 117117983 72.0 + 0 ENSG00000274344.1 misc_RNA RF02181 3 +56338 chr7 HAVANA gene 117072072 117146480 2866.0 - 0 ENSG00000226367.5 antisense ST7-AS2 2 OTTHUMG00000039525.4 +56339 chr7 ENSEMBL gene 117184126 117184199 74.0 + 0 ENSG00000275054.1 misc_RNA RF02183 3 +56340 chr7 HAVANA gene 117187548 117187740 193.0 - 0 ENSG00000227532.1 processed_pseudogene AC002542.1 2 OTTHUMG00000132299.1 +56341 chr7 ENSEMBL gene 117190133 117190269 137.0 + 0 ENSG00000278526.1 misc_RNA RF02184 3 +56342 chr7 ENSEMBL gene 117191647 117191761 115.0 + 0 ENSG00000278482.1 misc_RNA RF02185 3 +56343 chr7 HAVANA gene 116953238 117230103 6742.0 + 0 ENSG00000004866.20 protein_coding ST7 1 OTTHUMG00000023888.24 ncRNA_host,overlapping_locus +56344 chr7 HAVANA gene 117263917 117264388 472.0 + 0 ENSG00000224042.2 processed_pseudogene MTND4P6 2 OTTHUMG00000033990.3 +56345 chr7 HAVANA gene 117264393 117264530 138.0 - 0 ENSG00000230605.1 processed_pseudogene MTCYBP6 1 OTTHUMG00000119095.1 pseudo_consens,overlapping_locus +56346 chr7 HAVANA gene 117262918 117264888 787.0 - 0 ENSG00000230785.2 processed_pseudogene AC006326.1 1 OTTHUMG00000063430.3 pseudo_consens,overlapping_locus +56347 chr7 HAVANA gene 117300861 117322236 349.0 + 0 ENSG00000238202.1 antisense AC002465.1 1 OTTHUMG00000066355.1 +56348 chr7 HAVANA gene 117275451 117323289 4497.0 - 0 ENSG00000105989.9 protein_coding WNT2 1 OTTHUMG00000023428.7 +56349 chr7 HAVANA gene 117363222 117428123 3065.0 - 0 ENSG00000154438.7 protein_coding ASZ1 2 OTTHUMG00000064565.10 +56350 chr7 HAVANA gene 117439982 117440780 713.0 - 0 ENSG00000214684.2 processed_pseudogene AC003045.1 2 OTTHUMG00000066357.2 +56351 chr7 HAVANA gene 117487737 117487929 193.0 + 0 ENSG00000237974.1 processed_pseudogene AC000111.2 2 OTTHUMG00000099407.1 overlapping_locus +56352 chr7 HAVANA gene 117560733 117564676 221.0 - 0 ENSG00000232661.1 antisense CFTR-AS1 2 OTTHUMG00000066356.1 +56353 chr7 HAVANA gene 117586207 117586416 210.0 - 0 ENSG00000234001.1 processed_pseudogene AC000111.1 2 OTTHUMG00000128465.1 +56354 chr7 HAVANA gene 117604791 117647415 376.0 - 0 ENSG00000083622.8 antisense AC000061.1 2 OTTHUMG00000133661.3 +56355 chr7 HAVANA gene 117465784 117715971 8517.0 + 0 ENSG00000001626.15 protein_coding CFTR 1 OTTHUMG00000023076.16 overlapping_locus +56356 chr7 HAVANA gene 117710651 117874139 7035.0 - 0 ENSG00000077063.10 protein_coding CTTNBP2 1 OTTHUMG00000022880.12 +56357 chr7 HAVANA gene 117882859 117883675 471.0 + 0 ENSG00000224136.1 processed_pseudogene AC007568.1 1 OTTHUMG00000034031.3 pseudo_consens +56358 chr7 HAVANA gene 117998858 118004045 435.0 - 0 ENSG00000234826.1 lincRNA AC003084.1 1 OTTHUMG00000150172.1 +56359 chr7 HAVANA gene 118184032 118192824 6210.0 + 0 ENSG00000128534.7 protein_coding LSM8 2 OTTHUMG00000156956.4 +56360 chr7 HAVANA gene 118214669 118496171 3043.0 + 0 ENSG00000106013.14 protein_coding ANKRD7 2 OTTHUMG00000156960.3 +56361 chr7 HAVANA gene 118880103 118881288 986.0 - 0 ENSG00000229982.1 processed_pseudogene GTF3AP6 2 OTTHUMG00000156949.1 +56362 chr7 HAVANA gene 118950386 118951259 874.0 - 0 ENSG00000230520.1 processed_pseudogene AC092098.1 1 OTTHUMG00000156950.1 pseudo_consens +56363 chr7 HAVANA gene 119178177 119179149 973.0 - 0 ENSG00000270516.1 processed_pseudogene AC079791.1 1 OTTHUMG00000184511.1 pseudo_consens +56364 chr7 HAVANA gene 119704556 119907375 1994.0 - 0 ENSG00000225546.5 lincRNA LINC02476 2 OTTHUMG00000156951.1 +56365 chr7 ENSEMBL gene 120005976 120006101 126.0 - 0 ENSG00000271739.1 snRNA RNU1-29P 3 +56366 chr7 HAVANA gene 120141016 120142996 469.0 - 0 ENSG00000233417.1 lincRNA AC004872.1 1 OTTHUMG00000156953.1 +56367 chr7 HAVANA gene 120168345 120186064 751.0 + 0 ENSG00000233969.1 lincRNA AC004946.1 1 OTTHUMG00000156952.1 +56368 chr7 ENSEMBL gene 120672871 120672975 105.0 + 0 ENSG00000252023.1 snRNA RNU6-581P 3 +56369 chr7 HAVANA gene 120273668 120750331 5555.0 + 0 ENSG00000184408.9 protein_coding KCND2 2 OTTHUMG00000156989.2 ncRNA_host +56370 chr7 HAVANA gene 120746738 120752514 547.0 - 0 ENSG00000231295.1 antisense AC004888.1 1 OTTHUMG00000156990.1 +56371 chr7 HAVANA gene 120787320 120858402 3368.0 - 0 ENSG00000106025.8 protein_coding TSPAN12 2 OTTHUMG00000156980.5 +56372 chr7 HAVANA gene 120950749 120977216 5214.0 + 0 ENSG00000071243.15 protein_coding ING3 2 OTTHUMG00000141270.3 +56373 chr7 ENSEMBL gene 120981426 120981553 128.0 - 0 ENSG00000202225.1 rRNA_pseudogene RNA5SP240 3 +56374 chr7 HAVANA gene 121050927 121051203 277.0 + 0 ENSG00000234927.1 processed_pseudogene HMGN1P18 1 OTTHUMG00000156981.1 pseudo_consens,overlapping_locus +56375 chr7 ENSEMBL gene 121083700 121083813 114.0 - 0 ENSG00000212628.1 rRNA_pseudogene RNA5SP241 3 +56376 chr7 ENSEMBL gene 121194948 121195057 110.0 - 0 ENSG00000207090.1 snRNA RNU6-517P 3 +56377 chr7 HAVANA gene 120988677 121297444 7705.0 + 0 ENSG00000106034.17 protein_coding CPED1 1 OTTHUMG00000156982.5 overlapping_locus +56378 chr7 HAVANA gene 121325367 121341104 3261.0 + 0 ENSG00000002745.12 protein_coding WNT16 2 OTTHUMG00000156963.1 +56379 chr7 HAVANA gene 121348851 121396364 3422.0 - 0 ENSG00000196937.10 protein_coding FAM3C 2 OTTHUMG00000156979.2 +56380 chr7 HAVANA gene 121398452 121398767 316.0 + 0 ENSG00000213310.3 processed_pseudogene CYCSP19 1 OTTHUMG00000157004.1 pseudo_consens +56381 chr7 HAVANA gene 121419072 121419845 418.0 + 0 ENSG00000227371.1 processed_pseudogene AC074085.1 1 OTTHUMG00000157003.1 pseudo_consens +56382 chr7 HAVANA gene 121440834 121441261 428.0 - 0 ENSG00000234985.2 processed_pseudogene AC074085.2 1 OTTHUMG00000157002.3 pseudo_consens +56383 chr7 HAVANA gene 121643334 121686363 655.0 - 0 ENSG00000227743.2 lincRNA AC004875.1 1 OTTHUMG00000157001.3 +56384 chr7 ENSEMBL gene 121736443 121736725 283.0 + 0 ENSG00000252704.1 misc_RNA RN7SKP277 3 +56385 chr7 HAVANA gene 121842368 121845131 2050.0 - 0 ENSG00000233272.1 processed_pseudogene PNPT1P2 1 OTTHUMG00000157056.1 pseudo_consens +56386 chr7 HAVANA gene 121873089 122062036 9917.0 + 0 ENSG00000106278.11 protein_coding PTPRZ1 1 OTTHUMG00000157057.1 +56387 chr7 ENSEMBL gene 122081720 122081781 62.0 + 0 ENSG00000252003.1 snRNA RNU7-154P 3 +56388 chr7 HAVANA gene 122075647 122144280 4591.0 - 0 ENSG00000008311.14 protein_coding AASS 2 OTTHUMG00000157058.1 +56389 chr7 HAVANA gene 122159300 122162243 1854.0 + 0 ENSG00000226636.1 processed_pseudogene AC006020.1 1 OTTHUMG00000157059.1 pseudo_consens +56390 chr7 HAVANA gene 122216347 122218437 472.0 + 0 ENSG00000234418.1 lincRNA AC015983.2 2 OTTHUMG00000157098.1 +56391 chr7 HAVANA gene 122234531 122234903 373.0 + 0 ENSG00000213302.3 processed_pseudogene AC015983.1 1 OTTHUMG00000157101.1 pseudo_consens +56392 chr7 HAVANA gene 122303658 122310077 3313.0 + 0 ENSG00000230316.6 antisense FEZF1-AS1 2 OTTHUMG00000157095.1 +56393 chr7 HAVANA gene 122301394 122310691 2612.0 - 0 ENSG00000128610.11 protein_coding FEZF1 2 OTTHUMG00000157091.3 +56394 chr7 HAVANA gene 122328469 122440388 3458.0 + 0 ENSG00000240499.7 antisense AC004594.1 2 OTTHUMG00000157094.7 +56395 chr7 HAVANA gene 122676580 122676811 232.0 + 0 ENSG00000225795.1 processed_pseudogene AC006463.1 2 OTTHUMG00000157096.1 +56396 chr7 HAVANA gene 122681315 122681662 348.0 + 0 ENSG00000235459.5 processed_pseudogene RPS26P31 2 OTTHUMG00000157100.1 +56397 chr7 HAVANA gene 122697712 122699156 1445.0 - 0 ENSG00000188050.2 protein_coding RNF133 2 OTTHUMG00000157092.1 overlapping_locus,retrogene +56398 chr7 HAVANA gene 122701664 122702967 1304.0 - 0 ENSG00000235631.1 protein_coding RNF148 1 OTTHUMG00000157099.1 overlapping_locus +56399 chr7 HAVANA gene 122849746 122850352 607.0 + 0 ENSG00000227573.2 processed_pseudogene AC004986.1 2 OTTHUMG00000157097.2 +56400 chr7 HAVANA gene 122318425 122886759 6351.0 - 0 ENSG00000081803.15 protein_coding CADPS2 2 OTTHUMG00000157093.2 overlapping_locus +56401 chr7 HAVANA gene 122994704 122995700 997.0 - 0 ENSG00000128519.3 protein_coding TAS2R16 2 OTTHUMG00000157090.1 +56402 chr7 HAVANA gene 123069249 123103589 505.0 - 0 ENSG00000226680.2 lincRNA AC073311.1 1 OTTHUMG00000157089.2 +56403 chr7 HAVANA gene 123113531 123199986 4415.0 - 0 ENSG00000081800.8 protein_coding SLC13A1 2 OTTHUMG00000157087.1 +56404 chr7 HAVANA gene 123230120 123230741 622.0 - 0 ENSG00000223595.1 processed_pseudogene LYPLA1P1 1 OTTHUMG00000157088.1 pseudo_consens +56405 chr7 ENSEMBL gene 123457988 123458094 107.0 - 0 ENSG00000207338.1 snRNA RNU6-296P 3 +56406 chr7 HAVANA gene 123456629 123459856 451.0 + 0 ENSG00000232524.1 antisense AC073323.1 1 OTTHUMG00000157116.1 +56407 chr7 HAVANA gene 123452400 123535077 5893.0 - 0 ENSG00000164675.10 protein_coding IQUB 2 OTTHUMG00000157347.1 ncRNA_host +56408 chr7 HAVANA gene 123536997 123558255 9851.0 - 0 ENSG00000128609.14 protein_coding NDUFA5 2 OTTHUMG00000157348.2 +56409 chr7 HAVANA gene 123584859 123624957 1727.0 - 0 ENSG00000230442.5 antisense AC006333.1 2 OTTHUMG00000157115.1 +56410 chr7 HAVANA gene 123567010 123639481 4879.0 + 0 ENSG00000146809.12 protein_coding ASB15 2 OTTHUMG00000157114.7 +56411 chr7 HAVANA gene 123655807 123664290 2731.0 + 0 ENSG00000170807.11 protein_coding LMOD2 2 OTTHUMG00000157149.2 +56412 chr7 HAVANA gene 123681935 123749067 4435.0 - 0 ENSG00000106299.7 protein_coding WASL 2 OTTHUMG00000157346.2 +56413 chr7 HAVANA gene 123749068 123751166 2099.0 + 0 ENSG00000272686.1 antisense AC006333.2 2 OTTHUMG00000186321.1 +56414 chr7 ENSEMBL gene 123790605 123790711 107.0 - 0 ENSG00000201104.1 snRNA RNU6-11P 3 +56415 chr7 HAVANA gene 123814139 123829252 1279.0 + 0 ENSG00000228211.2 unitary_pseudogene HYAL6P 2 OTTHUMG00000154764.1 overlapping_locus +56416 chr7 HAVANA gene 123828983 123877478 2738.0 + 0 ENSG00000106302.9 protein_coding HYAL4 2 OTTHUMG00000157349.3 overlapping_locus +56417 chr7 HAVANA gene 123932132 123932459 328.0 + 0 ENSG00000225583.1 processed_pseudogene AC004690.1 1 OTTHUMG00000157283.1 pseudo_consens,overlapping_locus +56418 chr7 HAVANA gene 123925237 123971414 3032.0 + 0 ENSG00000106304.15 protein_coding SPAM1 2 OTTHUMG00000157284.4 overlapping_locus +56419 chr7 HAVANA gene 123994622 124027659 2064.0 + 0 ENSG00000241345.1 antisense AC004690.2 2 OTTHUMG00000157317.1 +56420 chr7 HAVANA gene 124030916 124033023 2108.0 - 0 ENSG00000234224.2 protein_coding TMEM229A 2 OTTHUMG00000154762.3 +56421 chr7 HAVANA gene 124274679 124287544 650.0 - 0 ENSG00000243574.1 lincRNA AC006148.2 1 OTTHUMG00000157319.1 +56422 chr7 HAVANA gene 124337380 124349860 254.0 - 0 ENSG00000241324.1 lincRNA AC004930.1 2 OTTHUMG00000157320.1 +56423 chr7 HAVANA gene 124032205 124395118 4713.0 + 0 ENSG00000242593.5 antisense AC006148.1 2 OTTHUMG00000157321.1 +56424 chr7 HAVANA gene 124476371 124476955 585.0 + 0 ENSG00000230268.3 protein_coding SSU72P8 2 OTTHUMG00000157318.2 retrogene +56425 chr7 HAVANA gene 124480524 124481395 872.0 + 0 ENSG00000213296.4 processed_pseudogene AC005521.1 1 OTTHUMG00000157212.2 pseudo_consens +56426 chr7 ENSEMBL gene 124647719 124647822 104.0 + 0 ENSG00000207214.1 snRNA RNU6-102P 3 +56427 chr7 HAVANA gene 124742312 124745017 2706.0 - 0 ENSG00000279419.1 TEC AC004925.1 2 OTTHUMG00000173330.1 +56428 chr7 HAVANA gene 124745997 124765627 3021.0 - 0 ENSG00000170775.2 protein_coding GPR37 2 OTTHUMG00000157197.1 +56429 chr7 HAVANA gene 124777292 124790810 669.0 - 0 ENSG00000275356.4 protein_coding C7orf77 2 OTTHUMG00000189249.2 +56430 chr7 HAVANA gene 124822386 124929983 5897.0 - 0 ENSG00000128513.14 protein_coding POT1 2 OTTHUMG00000157194.7 +56431 chr7 HAVANA gene 125033453 125035301 1299.0 + 0 ENSG00000186676.3 processed_pseudogene EEF1GP1 1 OTTHUMG00000157167.1 pseudo_consens,overlapping_locus +56432 chr7 HAVANA gene 125151326 125153611 600.0 - 0 ENSG00000224899.1 lincRNA AC019155.3 2 OTTHUMG00000157196.1 +56433 chr7 HAVANA gene 125159974 125160547 574.0 - 0 ENSG00000205898.3 processed_pseudogene AC019155.1 1 OTTHUMG00000157198.1 pseudo_consens +56434 chr7 HAVANA gene 124929873 125179315 6304.0 + 0 ENSG00000224897.6 antisense POT1-AS1 2 OTTHUMG00000157170.1 overlapping_locus +56435 chr7 HAVANA gene 125229579 125264291 1918.0 - 0 ENSG00000219445.2 lincRNA AC019155.2 2 OTTHUMG00000157195.1 +56436 chr7 HAVANA gene 125300504 125300878 375.0 - 0 ENSG00000213291.3 processed_pseudogene AC010099.1 1 OTTHUMG00000157166.2 pseudo_consens +56437 chr7 HAVANA gene 125344969 125345377 409.0 + 0 ENSG00000234071.1 processed_pseudogene AC010099.3 1 OTTHUMG00000157165.1 pseudo_consens,overlapping_locus +56438 chr7 HAVANA gene 125345825 125346197 373.0 + 0 ENSG00000227847.1 processed_pseudogene AC010099.2 1 OTTHUMG00000157168.2 pseudo_consens,overlapping_locus +56439 chr7 HAVANA gene 125172218 125379321 1453.0 + 0 ENSG00000237764.2 lincRNA AC010099.4 2 OTTHUMG00000157169.2 overlapping_locus +56440 chr7 HAVANA gene 125431347 125466401 955.0 + 0 ENSG00000227869.1 lincRNA AC073486.1 2 OTTHUMG00000157154.1 +56441 chr7 HAVANA gene 125917871 125933832 837.0 + 0 ENSG00000197462.3 lincRNA AC003975.1 2 OTTHUMG00000157151.2 +56442 chr7 HAVANA gene 126378970 126424185 646.0 + 0 ENSG00000241921.1 antisense AC000372.1 2 OTTHUMG00000157729.2 +56443 chr7 HAVANA gene 126511135 126512879 1745.0 + 0 ENSG00000227249.1 processed_pseudogene AC000374.1 1 OTTHUMG00000066224.1 pseudo_consens +56444 chr7 HAVANA gene 126868767 126870532 1766.0 - 0 ENSG00000224981.1 processed_pseudogene AC000367.1 2 OTTHUMG00000128877.2 overlapping_locus +56445 chr7 HAVANA gene 126980967 126981778 425.0 + 0 ENSG00000230820.2 processed_pseudogene AC000362.1 1 OTTHUMG00000034029.2 pseudo_consens +56446 chr7 ENSEMBL gene 127058088 127058184 97.0 - 0 ENSG00000207692.3 miRNA MIR592 3 +56447 chr7 HAVANA gene 127215127 127229921 1912.0 + 0 ENSG00000236340.5 antisense AC000099.1 2 OTTHUMG00000063970.2 +56448 chr7 HAVANA gene 126438598 127253294 6457.0 - 0 ENSG00000179603.17 protein_coding GRM8 2 OTTHUMG00000022888.11 ncRNA_host,overlapping_locus +56449 chr7 HAVANA gene 127295620 127296203 584.0 + 0 ENSG00000236105.1 processed_pseudogene PRELID3BP10 1 OTTHUMG00000034030.2 pseudo_consens +56450 chr7 HAVANA gene 127349833 127350293 461.0 - 0 ENSG00000279265.1 TEC AC000123.2 2 OTTHUMG00000066283.1 overlapping_locus +56451 chr7 HAVANA gene 127350128 127351523 516.0 + 0 ENSG00000224138.1 antisense AC000123.1 2 OTTHUMG00000148663.1 +56452 chr7 HAVANA gene 127359785 127364759 4975.0 - 0 ENSG00000280347.1 TEC AC000123.3 2 OTTHUMG00000066284.1 overlapping_locus +56453 chr7 HAVANA gene 127346790 127431924 5793.0 - 0 ENSG00000048405.9 protein_coding ZNF800 2 OTTHUMG00000023456.6 overlapping_locus +56454 chr7 HAVANA gene 127476883 127485804 957.0 + 0 ENSG00000226770.1 lincRNA AC000124.1 2 OTTHUMG00000064344.2 +56455 chr7 HAVANA gene 127588345 127591705 1871.0 + 0 ENSG00000004059.10 protein_coding ARF5 2 OTTHUMG00000023246.6 overlapping_locus +56456 chr7 HAVANA gene 127580618 127593611 4987.0 - 0 ENSG00000179562.2 protein_coding GCC1 2 OTTHUMG00000023590.3 +56457 chr7 HAVANA gene 127591409 127602144 3214.0 + 0 ENSG00000106328.9 protein_coding FSCN3 2 OTTHUMG00000022935.6 overlapping_locus +56458 chr7 HAVANA gene 127610292 127618114 2974.0 - 0 ENSG00000106331.15 protein_coding PAX4 1 OTTHUMG00000157562.5 +56459 chr7 HAVANA gene 127644685 127652012 495.0 - 0 ENSG00000240790.1 antisense AC073934.1 2 OTTHUMG00000157565.1 +56460 chr7 HAVANA gene 127857852 127858488 637.0 - 0 ENSG00000240579.1 processed_pseudogene AC006529.1 1 OTTHUMG00000157561.1 pseudo_consens +56461 chr7 HAVANA gene 127997597 128000077 2481.0 + 0 ENSG00000279078.1 lincRNA SND1-IT1 2 OTTHUMG00000189460.1 overlapping_locus +56462 chr7 HAVANA gene 128027071 128032107 4036.0 - 0 ENSG00000128594.7 protein_coding LRRC4 1 OTTHUMG00000157563.3 +56463 chr7 ENSEMBL gene 128081861 128081960 100.0 + 0 ENSG00000207588.1 miRNA MIR593 3 +56464 chr7 HAVANA gene 127652180 128092609 6500.0 + 0 ENSG00000197157.10 protein_coding SND1 2 OTTHUMG00000157560.2 ncRNA_host +56465 chr7 ENSEMBL gene 128207872 128207943 72.0 + 0 ENSG00000207705.2 miRNA MIR129-1 3 +56466 chr7 HAVANA gene 128241284 128257628 3420.0 + 0 ENSG00000174697.4 protein_coding LEP 2 OTTHUMG00000157564.1 +56467 chr7 HAVANA gene 128264526 128264889 364.0 - 0 ENSG00000272915.1 lincRNA AC018635.2 2 OTTHUMG00000186322.1 +56468 chr7 HAVANA gene 128306649 128307678 1030.0 + 0 ENSG00000242261.1 processed_pseudogene AC018635.1 2 OTTHUMG00000157710.1 +56469 chr7 HAVANA gene 128297685 128343908 15866.0 - 0 ENSG00000106344.8 protein_coding RBM28 1 OTTHUMG00000157711.3 +56470 chr7 ENSEMBL gene 128344081 128344142 62.0 + 0 ENSG00000238750.1 snRNA RNU7-27P 3 +56471 chr7 HAVANA gene 128350325 128361685 3683.0 - 0 ENSG00000224940.8 protein_coding PRRT4 2 OTTHUMG00000157714.4 +56472 chr7 HAVANA gene 128392277 128410252 3662.0 - 0 ENSG00000106348.17 protein_coding IMPDH1 2 OTTHUMG00000157713.4 +56473 chr7 HAVANA gene 128433422 128433713 292.0 - 0 ENSG00000228700.1 processed_pseudogene AC010655.1 1 OTTHUMG00000157249.1 pseudo_consens +56474 chr7 ENSEMBL gene 128443449 128443510 62.0 - 0 ENSG00000238590.1 snRNA RNU7-54P 3 +56475 chr7 HAVANA gene 128455849 128458418 2070.0 + 0 ENSG00000135245.9 protein_coding HILPDA 2 OTTHUMG00000157712.1 overlapping_locus +56476 chr7 HAVANA gene 128466563 128469171 450.0 + 0 ENSG00000272601.1 transcribed_unprocessed_pseudogene AC010655.3 2 OTTHUMG00000157715.1 overlapping_locus +56477 chr7 HAVANA gene 128455937 128469197 662.0 + 0 ENSG00000240758.2 processed_transcript AC010655.2 2 OTTHUMG00000186396.1 overlapping_locus +56478 chr7 ENSEMBL gene 128483907 128484158 252.0 - 0 ENSG00000276988.1 misc_RNA RF00017 3 +56479 chr7 HAVANA gene 128455840 128493859 707.0 + 0 ENSG00000273184.1 processed_transcript AC010655.4 2 OTTHUMG00000186387.1 overlapping_locus +56480 chr7 HAVANA gene 128476729 128506602 6749.0 + 0 ENSG00000165055.15 protein_coding METTL2B 2 OTTHUMG00000143738.2 overlapping_locus +56481 chr7 HAVANA gene 128524016 128531069 7054.0 - 0 ENSG00000273270.1 lincRNA AC090114.2 2 OTTHUMG00000186328.1 +56482 chr7 HAVANA gene 128570241 128570688 448.0 - 0 ENSG00000213280.2 processed_pseudogene AC090114.1 1 OTTHUMG00000157248.1 pseudo_consens +56483 chr7 HAVANA gene 128533652 128615970 829.0 + 0 ENSG00000280828.1 unprocessed_pseudogene AC090114.3 2 OTTHUMG00000158229.2 overlapping_locus +56484 chr7 HAVANA gene 128617865 128625905 281.0 + 0 ENSG00000281896.1 transcribed_unprocessed_pseudogene AC018638.8 2 OTTHUMG00000189726.1 overlapping_locus +56485 chr7 HAVANA gene 128574751 128626473 1552.0 + 0 ENSG00000242588.6 processed_transcript AC108010.1 2 OTTHUMG00000189725.4 overlapping_locus +56486 chr7 ENSEMBL gene 128627172 128627275 104.0 + 0 ENSG00000223189.1 snRNA RNU6-177P 3 +56487 chr7 HAVANA gene 128651185 128652334 1150.0 + 0 ENSG00000243302.3 processed_pseudogene AC018638.4 2 OTTHUMG00000158227.1 +56488 chr7 HAVANA gene 128652841 128653243 403.0 + 0 ENSG00000230715.3 processed_pseudogene AC018638.2 2 OTTHUMG00000158226.1 +56489 chr7 HAVANA gene 128653690 128654019 330.0 - 0 ENSG00000229413.2 processed_pseudogene AC018638.1 2 OTTHUMG00000186795.1 +56490 chr7 HAVANA gene 128653969 128654722 754.0 + 0 ENSG00000243679.1 processed_pseudogene AC018638.5 2 OTTHUMG00000158228.1 +56491 chr7 HAVANA gene 128655962 128658791 2732.0 - 0 ENSG00000281490.1 processed_pseudogene CICP14 1 OTTHUMG00000184505.2 pseudo_consens +56492 chr7 HAVANA gene 128667043 128668156 1114.0 + 0 ENSG00000271553.1 lincRNA AC018638.7 2 OTTHUMG00000184226.1 +56493 chr7 HAVANA gene 128669087 128669892 132.0 - 0 ENSG00000241493.1 processed_pseudogene AC018638.3 2 OTTHUMG00000158272.1 +56494 chr7 HAVANA gene 128672288 128687872 5875.0 + 0 ENSG00000205085.11 protein_coding FAM71F2 2 OTTHUMG00000158275.3 +56495 chr7 HAVANA gene 128690451 128691717 1267.0 + 0 ENSG00000271344.1 lincRNA AC018638.6 2 OTTHUMG00000184225.1 +56496 chr7 HAVANA gene 128693450 128693924 475.0 + 0 ENSG00000239722.1 processed_pseudogene IMP3P2 2 OTTHUMG00000158273.2 +56497 chr7 ENSEMBL gene 128697439 128697556 118.0 + 0 ENSG00000201041.1 rRNA_pseudogene RNA5SP242 3 +56498 chr7 ENSEMBL gene 128697710 128697744 35.0 + 0 ENSG00000252866.1 rRNA_pseudogene RNA5SP243 3 +56499 chr7 HAVANA gene 128709061 128731743 2521.0 + 0 ENSG00000135248.15 protein_coding FAM71F1 1 OTTHUMG00000158276.4 +56500 chr7 ENSEMBL gene 128761338 128761598 261.0 + 0 ENSG00000244218.3 misc_RNA RN7SL81P 3 +56501 chr7 HAVANA gene 128739292 128771807 4537.0 + 0 ENSG00000128595.16 protein_coding CALU 2 OTTHUMG00000158274.3 ncRNA_host +56502 chr7 HAVANA gene 128772491 128775790 1096.0 - 0 ENSG00000128617.2 protein_coding OPN1SW 2 OTTHUMG00000158311.1 +56503 chr7 HAVANA gene 128790757 128822132 6188.0 + 0 ENSG00000128596.16 protein_coding CCDC136 1 OTTHUMG00000158310.3 +56504 chr7 HAVANA gene 128830377 128859274 9280.0 + 0 ENSG00000128591.15 protein_coding FLNC 2 OTTHUMG00000023627.3 +56505 chr7 HAVANA gene 128850162 128862626 559.0 - 0 ENSG00000242902.1 antisense FLNC-AS1 2 OTTHUMG00000158366.1 overlapping_locus +56506 chr7 HAVANA gene 128862826 128865844 789.0 + 0 ENSG00000128524.4 protein_coding ATP6V1F 1 OTTHUMG00000158365.1 +56507 chr7 HAVANA gene 128866308 128872044 3902.0 + 0 ENSG00000272899.3 protein_coding ATP6V1FNB 2 OTTHUMG00000158367.3 +56508 chr7 HAVANA gene 128862451 128910719 8259.0 - 0 ENSG00000135253.13 protein_coding KCP 2 OTTHUMG00000158363.6 overlapping_locus +56509 chr7 HAVANA gene 128912732 128914063 543.0 - 0 ENSG00000224163.4 unprocessed_pseudogene AC025594.1 2 OTTHUMG00000158408.1 +56510 chr7 HAVANA gene 128937612 128950035 4375.0 + 0 ENSG00000128604.19 protein_coding IRF5 2 OTTHUMG00000158410.4 +56511 chr7 HAVANA gene 128952527 128953316 790.0 - 0 ENSG00000275106.1 TEC AC025594.2 2 OTTHUMG00000186757.1 +56512 chr7 ENSEMBL gene 128970734 128971029 296.0 + 0 ENSG00000242241.3 misc_RNA RN7SL306P 3 +56513 chr7 HAVANA gene 129028889 129030527 1639.0 + 0 ENSG00000244556.1 processed_pseudogene ODCP 1 OTTHUMG00000158406.1 pseudo_consens +56514 chr7 HAVANA gene 128954180 129055173 4676.0 - 0 ENSG00000064419.13 protein_coding TNPO3 1 OTTHUMG00000158409.3 +56515 chr7 HAVANA gene 129055223 129057239 2017.0 + 0 ENSG00000230359.5 transcribed_processed_pseudogene TPI1P2 1 OTTHUMG00000158411.3 pseudo_consens +56516 chr7 HAVANA gene 129066021 129066462 442.0 - 0 ENSG00000242162.1 processed_pseudogene AC018639.1 1 OTTHUMG00000158407.1 pseudo_consens +56517 chr7 HAVANA gene 129095301 129095811 359.0 - 0 ENSG00000241102.1 processed_pseudogene AC011005.2 2 OTTHUMG00000158424.1 +56518 chr7 HAVANA gene 129096027 129096735 395.0 - 0 ENSG00000241573.1 processed_pseudogene AC011005.3 2 OTTHUMG00000158423.1 +56519 chr7 HAVANA gene 129117513 129117827 315.0 - 0 ENSG00000240416.1 processed_pseudogene CYCSP20 1 OTTHUMG00000158419.1 pseudo_consens +56520 chr7 HAVANA gene 129126518 129130793 1263.0 + 0 ENSG00000230626.4 protein_coding AC011005.1 2 OTTHUMG00000158418.2 retrogene +56521 chr7 ENSEMBL gene 129164849 129164961 113.0 + 0 ENSG00000200629.1 misc_RNA RNY1P11 3 +56522 chr7 HAVANA gene 129144892 129169697 2750.0 + 0 ENSG00000158457.5 protein_coding TSPAN33 2 OTTHUMG00000158420.3 ncRNA_host +56523 chr7 HAVANA gene 129209775 129213545 535.0 - 0 ENSG00000243230.1 antisense AC011005.4 2 OTTHUMG00000158425.1 +56524 chr7 HAVANA gene 129188872 129213545 4311.0 + 0 ENSG00000128602.9 protein_coding SMO 2 OTTHUMG00000158421.2 +56525 chr7 HAVANA gene 129410113 129410370 258.0 - 0 ENSG00000238072.1 processed_pseudogene AC009244.1 2 OTTHUMG00000157697.1 +56526 chr7 HAVANA gene 129225023 129430211 6858.0 + 0 ENSG00000158467.16 protein_coding AHCYL2 1 OTTHUMG00000157677.5 +56527 chr7 HAVANA gene 129477875 129478101 227.0 + 0 ENSG00000239919.1 processed_pseudogene SNRPGP3 1 OTTHUMG00000157694.1 pseudo_consens,overlapping_locus +56528 chr7 ENSEMBL gene 129484504 129484656 153.0 + 0 ENSG00000199846.1 snRNA RNU1-72P 3 +56529 chr7 HAVANA gene 129434433 129488399 5876.0 + 0 ENSG00000128578.9 protein_coding STRIP2 2 OTTHUMG00000157695.1 ncRNA_host,overlapping_locus +56530 chr7 HAVANA gene 129502479 129512932 1035.0 + 0 ENSG00000240204.2 protein_coding SMKR1 1 OTTHUMG00000157696.3 +56531 chr7 HAVANA gene 129604548 129611630 7083.0 - 0 ENSG00000273329.1 lincRNA AC078846.1 2 OTTHUMG00000186330.1 +56532 chr7 ENSEMBL gene 129756266 129756377 112.0 + 0 ENSG00000212238.1 rRNA_pseudogene RNA5SP244 3 +56533 chr7 HAVANA gene 129611714 129757082 4125.0 + 0 ENSG00000106459.14 protein_coding NRF1 2 OTTHUMG00000143736.2 +56534 chr7 ENSEMBL gene 129770383 129770492 110.0 - 0 ENSG00000207990.3 miRNA MIR182 3 +56535 chr7 ENSEMBL gene 129774692 129774769 78.0 - 0 ENSG00000199158.1 miRNA MIR96 3 +56536 chr7 ENSEMBL gene 129774905 129775014 110.0 - 0 ENSG00000207691.1 miRNA MIR183 3 +56537 chr7 HAVANA gene 129783370 129785185 305.0 - 0 ENSG00000242078.1 lincRNA AC084864.1 2 OTTHUMG00000157659.1 +56538 chr7 HAVANA gene 129830732 129952949 6392.0 - 0 ENSG00000186591.12 protein_coding UBE2H 1 OTTHUMG00000157650.6 +56539 chr7 ENSEMBL gene 129954693 129954794 102.0 + 0 ENSG00000199516.1 misc_RNA RF00019 3 +56540 chr7 HAVANA gene 129953234 130026989 1533.0 + 0 ENSG00000244036.3 antisense AC073320.1 1 OTTHUMG00000157652.3 ncRNA_host +56541 chr7 ENSEMBL gene 130027277 130027397 121.0 + 0 ENSG00000201109.1 rRNA_pseudogene RNA5SP245 3 +56542 chr7 HAVANA gene 130018286 130051451 3011.0 - 0 ENSG00000091732.16 protein_coding ZC3HC1 1 OTTHUMG00000157648.3 +56543 chr7 HAVANA gene 130070510 130135720 6622.0 + 0 ENSG00000128607.13 protein_coding KLHDC10 2 OTTHUMG00000157654.3 +56544 chr7 HAVANA gene 130141731 130142615 503.0 + 0 ENSG00000229196.3 antisense AC087071.1 2 OTTHUMG00000157651.1 +56545 chr7 HAVANA gene 130173718 130205361 575.0 + 0 ENSG00000240571.1 antisense AC087071.2 2 OTTHUMG00000157649.1 +56546 chr7 HAVANA gene 130164715 130207770 4759.0 - 0 ENSG00000146842.16 protein_coding TMEM209 2 OTTHUMG00000157653.2 +56547 chr7 HAVANA gene 130206344 130216844 1368.0 + 0 ENSG00000165120.4 protein_coding SSMEM1 2 OTTHUMG00000157844.3 +56548 chr7 HAVANA gene 130255902 130262770 432.0 + 0 ENSG00000270992.1 processed_pseudogene AC024085.1 1 OTTHUMG00000184430.1 pseudo_consens +56549 chr7 HAVANA gene 130266827 130289798 1829.0 + 0 ENSG00000158516.11 protein_coding CPA2 2 OTTHUMG00000157019.2 +56550 chr7 HAVANA gene 130293134 130324180 3958.0 + 0 ENSG00000128510.11 protein_coding CPA4 1 OTTHUMG00000157825.5 +56551 chr7 HAVANA gene 130344816 130368730 2965.0 + 0 ENSG00000158525.15 protein_coding CPA5 1 OTTHUMG00000157824.3 +56552 chr7 HAVANA gene 130380339 130388114 2921.0 + 0 ENSG00000091704.9 protein_coding CPA1 2 OTTHUMG00000157826.11 +56553 chr7 HAVANA gene 130393771 130442433 12566.0 - 0 ENSG00000106477.18 protein_coding CEP41 2 OTTHUMG00000157823.6 +56554 chr7 HAVANA gene 130481491 130484392 2902.0 - 0 ENSG00000259920.1 lincRNA AC007938.1 2 OTTHUMG00000173197.1 +56555 chr7 ENSEMBL gene 130487483 130487622 140.0 + 0 ENSG00000277269.1 misc_RNA RF02148 3 +56556 chr7 ENSEMBL gene 130488304 130488538 235.0 + 0 ENSG00000278055.1 misc_RNA RF02149 3 +56557 chr7 ENSEMBL gene 130489868 130489966 99.0 + 0 ENSG00000274500.1 misc_RNA RF02150 3 +56558 chr7 HAVANA gene 130486042 130491033 4118.0 - 0 ENSG00000272701.3 antisense MESTIT1 2 OTTHUMG00000186331.3 +56559 chr7 ENSEMBL gene 130496111 130496204 94.0 + 0 ENSG00000199043.1 miRNA MIR335 3 +56560 chr7 HAVANA gene 130495794 130498427 2634.0 - 0 ENSG00000270823.1 antisense AC007938.2 2 OTTHUMG00000185221.1 +56561 chr7 HAVANA gene 130486171 130506465 4794.0 + 0 ENSG00000106484.15 protein_coding MEST 1 OTTHUMG00000156661.26 ncRNA_host +56562 chr7 HAVANA gene 130507660 130508282 623.0 + 0 ENSG00000270953.1 antisense AC007938.3 2 OTTHUMG00000185222.1 +56563 chr7 ENSEMBL gene 130602795 130602913 119.0 - 0 ENSG00000239021.1 rRNA_pseudogene RNA5SP246 3 +56564 chr7 HAVANA gene 130645225 130645594 370.0 - 0 ENSG00000226045.1 processed_pseudogene AC234644.1 1 OTTHUMG00000155036.1 pseudo_consens,overlapping_locus +56565 chr7 HAVANA gene 130506238 130668748 4139.0 - 0 ENSG00000158623.14 protein_coding COPG2 2 OTTHUMG00000155364.4 overlapping_locus +56566 chr7 HAVANA gene 130668648 130687432 2259.0 - 0 ENSG00000213265.8 protein_coding TSGA13 2 OTTHUMG00000154999.39 overlapping_locus +56567 chr7 HAVANA gene 130731235 130734176 2942.0 - 0 ENSG00000266265.3 protein_coding KLF14 2 OTTHUMG00000188298.2 +56568 chr7 HAVANA gene 130790208 130791724 1517.0 + 0 ENSG00000271522.1 lincRNA AC016831.5 2 OTTHUMG00000185223.1 +56569 chr7 HAVANA gene 130822868 130823219 352.0 - 0 ENSG00000229858.2 processed_pseudogene AC016831.1 2 OTTHUMG00000155004.1 overlapping_locus +56570 chr7 HAVANA gene 130823205 130823511 307.0 - 0 ENSG00000240680.1 processed_pseudogene AC016831.3 2 OTTHUMG00000155003.1 overlapping_locus +56571 chr7 HAVANA gene 130840204 130843725 1723.0 - 0 ENSG00000232716.2 processed_pseudogene AC016831.2 2 OTTHUMG00000155011.3 +56572 chr7 ENSEMBL gene 130876747 130876810 64.0 - 0 ENSG00000284032.1 miRNA MIR29A 3 +56573 chr7 ENSEMBL gene 130877459 130877539 81.0 - 0 ENSG00000283797.1 miRNA MIR29B1 3 +56574 chr7 HAVANA gene 130876809 130913310 6619.0 - 0 ENSG00000226380.9 lincRNA LINC-PINT 2 OTTHUMG00000043895.7 ncRNA_host,overlapping_locus +56575 chr7 HAVANA gene 130853720 130928649 1616.0 + 0 ENSG00000233559.1 lincRNA LINC00513 2 OTTHUMG00000155022.1 +56576 chr7 HAVANA gene 130930209 130932206 1998.0 - 0 ENSG00000271204.1 lincRNA AC016831.4 2 OTTHUMG00000185224.1 +56577 chr7 HAVANA gene 130936464 130939661 3198.0 + 0 ENSG00000273319.1 lincRNA AC058791.1 2 OTTHUMG00000186335.1 +56578 chr7 ENSEMBL gene 131054886 131054992 107.0 - 0 ENSG00000199627.1 snRNA RNU6-1010P 3 +56579 chr7 HAVANA gene 130791264 131110161 11088.0 - 0 ENSG00000285106.1 lincRNA AC016831.6 2 OTTHUMG00000192464.1 ncRNA_host,overlapping_locus +56580 chr7 HAVANA gene 130938963 131110176 9030.0 - 0 ENSG00000231721.7 processed_transcript LINC-PINT 2 OTTHUMG00000155000.3 ncRNA_host,overlapping_locus +56581 chr7 HAVANA gene 131242590 131242995 406.0 + 0 ENSG00000233287.1 processed_pseudogene AC009362.1 1 OTTHUMG00000155005.1 pseudo_consens,overlapping_locus +56582 chr7 HAVANA gene 131309469 131328222 3043.0 - 0 ENSG00000236753.6 processed_transcript MKLN1-AS 1 OTTHUMG00000154998.4 +56583 chr7 HAVANA gene 131110096 131496636 12878.0 + 0 ENSG00000128585.17 protein_coding MKLN1 1 OTTHUMG00000154880.6 overlapping_locus +56584 chr7 HAVANA gene 131493964 131497694 3731.0 - 0 ENSG00000273489.1 antisense AC008264.2 2 OTTHUMG00000186336.1 +56585 chr7 HAVANA gene 131520137 131520503 367.0 + 0 ENSG00000224545.1 processed_pseudogene AC008264.1 1 OTTHUMG00000154919.1 pseudo_consens +56586 chr7 HAVANA gene 131500262 131558217 6874.0 - 0 ENSG00000128567.16 protein_coding PODXL 2 OTTHUMG00000154918.4 +56587 chr7 HAVANA gene 131661952 131662624 673.0 - 0 ENSG00000213261.3 processed_pseudogene EEF1B2P6 1 OTTHUMG00000155056.1 pseudo_consens +56588 chr7 HAVANA gene 131665507 131665858 352.0 + 0 ENSG00000236238.2 processed_pseudogene AC093106.1 1 OTTHUMG00000155052.2 pseudo_consens +56589 chr7 HAVANA gene 131702269 131702653 385.0 - 0 ENSG00000236395.1 processed_pseudogene AC093106.2 1 OTTHUMG00000155055.1 pseudo_consens +56590 chr7 HAVANA gene 131753746 131754252 507.0 - 0 ENSG00000236281.1 processed_pseudogene NDUFB9P2 1 OTTHUMG00000155054.1 pseudo_consens +56591 chr7 HAVANA gene 131892616 131893615 731.0 - 0 ENSG00000233263.1 processed_pseudogene AC009518.2 1 OTTHUMG00000155043.3 pseudo_consens +56592 chr7 HAVANA gene 131893822 131894074 253.0 + 0 ENSG00000236386.1 processed_pseudogene AC009518.3 1 OTTHUMG00000155042.2 pseudo_consens +56593 chr7 HAVANA gene 131897641 131948953 1601.0 + 0 ENSG00000224865.7 lincRNA AC009518.1 2 OTTHUMG00000155053.2 +56594 chr7 HAVANA gene 132086266 132087992 712.0 + 0 ENSG00000229532.1 processed_pseudogene AC105443.1 2 OTTHUMG00000155107.4 +56595 chr7 HAVANA gene 132264152 132271269 414.0 + 0 ENSG00000225144.2 antisense AC018643.1 2 OTTHUMG00000155196.2 +56596 chr7 HAVANA gene 132352334 132367976 526.0 + 0 ENSG00000223436.1 antisense AC011625.1 2 OTTHUMG00000155198.1 +56597 chr7 HAVANA gene 132123332 132648688 16372.0 - 0 ENSG00000221866.9 protein_coding PLXNA4 2 OTTHUMG00000155108.3 +56598 chr7 HAVANA gene 132648794 132728769 2442.0 + 0 ENSG00000183470.9 lincRNA FLJ40288 1 OTTHUMG00000150507.5 +56599 chr7 ENSEMBL gene 132753023 132753126 104.0 + 0 ENSG00000201009.1 snoRNA RF00218 3 +56600 chr7 HAVANA gene 132758970 132760632 751.0 + 0 ENSG00000225881.1 antisense AC009365.1 2 OTTHUMG00000155197.1 +56601 chr7 HAVANA gene 132830693 132849593 799.0 + 0 ENSG00000227197.1 antisense AC009365.2 2 OTTHUMG00000155195.1 +56602 chr7 ENSEMBL gene 133034860 133034915 56.0 - 0 ENSG00000284135.1 miRNA MIR3654 3 +56603 chr7 HAVANA gene 133034607 133035920 1314.0 - 0 ENSG00000283041.1 processed_pseudogene AC008038.1 2 OTTHUMG00000191511.1 overlapping_locus +56604 chr7 HAVANA gene 132784868 133082088 3718.0 - 0 ENSG00000106554.12 protein_coding CHCHD3 2 OTTHUMG00000155231.2 ncRNA_host,overlapping_locus +56605 chr7 ENSEMBL gene 133082829 133082932 104.0 + 0 ENSG00000272393.1 snRNA RNU6-92P 3 +56606 chr7 HAVANA gene 133169416 133170514 1099.0 - 0 ENSG00000237821.1 processed_pseudogene AC083873.1 1 OTTHUMG00000155200.1 pseudo_consens +56607 chr7 ENSEMBL gene 133290881 133290988 108.0 + 0 ENSG00000276137.1 miRNA MIR6133 3 +56608 chr7 HAVANA gene 133315009 133315413 405.0 - 0 ENSG00000235429.1 processed_pseudogene AC083875.1 1 OTTHUMG00000155232.1 pseudo_consens +56609 chr7 HAVANA gene 133727368 133727734 367.0 - 0 ENSG00000235967.1 processed_pseudogene COX5BP3 1 OTTHUMG00000155234.1 pseudo_consens +56610 chr7 HAVANA gene 133732493 133733595 782.0 - 0 ENSG00000226205.1 processed_pseudogene AC007790.1 1 OTTHUMG00000155265.3 pseudo_consens +56611 chr7 HAVANA gene 133253073 134066589 9466.0 + 0 ENSG00000131558.14 protein_coding EXOC4 2 OTTHUMG00000155259.4 ncRNA_host +56612 chr7 HAVANA gene 134127299 134264591 3249.0 + 0 ENSG00000155530.3 protein_coding LRGUK 2 OTTHUMG00000155320.3 +56613 chr7 HAVANA gene 134284500 134286055 414.0 + 0 ENSG00000231098.1 antisense AC008154.2 1 OTTHUMG00000155377.1 +56614 chr7 HAVANA gene 134289332 134317051 7109.0 - 0 ENSG00000205060.10 protein_coding SLC35B4 2 OTTHUMG00000155321.3 +56615 chr7 HAVANA gene 134346071 134350791 327.0 - 0 ENSG00000229177.1 lincRNA AC008154.1 1 OTTHUMG00000155590.1 +56616 chr7 HAVANA gene 134416290 134432453 1205.0 - 0 ENSG00000273297.1 lincRNA AC009275.1 2 OTTHUMG00000186342.1 +56617 chr7 HAVANA gene 134442350 134459284 3660.0 - 0 ENSG00000085662.13 protein_coding AKR1B1 2 OTTHUMG00000155322.5 +56618 chr7 HAVANA gene 134527592 134541408 1744.0 + 0 ENSG00000198074.9 protein_coding AKR1B10 2 OTTHUMG00000155356.3 +56619 chr7 HAVANA gene 134549136 134579875 3325.0 + 0 ENSG00000227471.8 protein_coding AKR1B15 2 OTTHUMG00000155376.2 +56620 chr7 HAVANA gene 134646808 134679813 2539.0 + 0 ENSG00000172331.11 protein_coding BPGM 2 OTTHUMG00000155380.2 +56621 chr7 HAVANA gene 134684144 134687990 253.0 + 0 ENSG00000224375.1 lincRNA AC009276.1 2 OTTHUMG00000155405.1 +56622 chr7 HAVANA gene 134734898 134735129 232.0 - 0 ENSG00000230101.5 processed_pseudogene TUBB3P2 2 OTTHUMG00000155458.1 +56623 chr7 HAVANA gene 134744252 134970728 9843.0 + 0 ENSG00000122786.19 protein_coding CALD1 2 OTTHUMG00000155407.9 +56624 chr7 HAVANA gene 135128444 135129685 1242.0 + 0 ENSG00000223500.1 processed_pseudogene AC083862.1 1 OTTHUMG00000155416.1 pseudo_consens,overlapping_locus +56625 chr7 HAVANA gene 134986508 135147963 7307.0 + 0 ENSG00000146856.14 protein_coding AGBL3 2 OTTHUMG00000155406.5 overlapping_locus +56626 chr7 HAVANA gene 135148072 135166215 2313.0 + 0 ENSG00000146859.6 protein_coding TMEM140 2 OTTHUMG00000155413.2 +56627 chr7 HAVANA gene 135168403 135169547 1145.0 + 0 ENSG00000272941.1 antisense AC083862.2 2 OTTHUMG00000186343.1 +56628 chr7 HAVANA gene 135092363 135170795 5321.0 - 0 ENSG00000122783.16 protein_coding CYREN 2 OTTHUMG00000155447.5 +56629 chr7 ENSEMBL gene 135206994 135207078 85.0 - 0 ENSG00000277138.1 miRNA MIR6509 3 +56630 chr7 HAVANA gene 135198401 135209837 2503.0 + 0 ENSG00000231794.5 antisense AC009542.1 2 OTTHUMG00000155446.4 +56631 chr7 HAVANA gene 135183839 135211534 6032.0 - 0 ENSG00000105875.13 protein_coding WDR91 1 OTTHUMG00000155414.3 ncRNA_host +56632 chr7 HAVANA gene 135231979 135258492 993.0 + 0 ENSG00000146857.3 protein_coding STRA8 2 OTTHUMG00000155415.2 +56633 chr7 HAVANA gene 135246113 135317752 2688.0 - 0 ENSG00000276067.2 transcribed_unprocessed_pseudogene AC009542.2 2 OTTHUMG00000187701.2 +56634 chr7 HAVANA gene 135444461 135444925 465.0 + 0 ENSG00000227073.1 processed_pseudogene SDHDP2 1 OTTHUMG00000155494.2 pseudo_consens +56635 chr7 HAVANA gene 135361795 135510127 6999.0 - 0 ENSG00000080802.18 protein_coding CNOT4 1 OTTHUMG00000155568.5 +56636 chr7 HAVANA gene 135557919 135648757 7619.0 + 0 ENSG00000155561.14 protein_coding NUP205 1 OTTHUMG00000155497.4 +56637 chr7 HAVANA gene 135650972 135651416 445.0 + 0 ENSG00000271414.1 processed_pseudogene AC093107.2 1 OTTHUMG00000184427.1 pseudo_consens +56638 chr7 HAVANA gene 135660039 135660647 609.0 + 0 ENSG00000223718.3 processed_pseudogene AC093107.1 1 OTTHUMG00000155496.1 pseudo_consens +56639 chr7 ENSEMBL gene 135665599 135665702 104.0 - 0 ENSG00000212303.1 snRNA RNU6-1154P 3 +56640 chr7 HAVANA gene 135662496 135693418 4930.0 + 0 ENSG00000243317.7 protein_coding STMP1 2 OTTHUMG00000155495.6 +56641 chr7 HAVANA gene 135704537 135704841 305.0 + 0 ENSG00000273219.1 antisense AC091736.1 2 OTTHUMG00000186345.1 +56642 chr7 HAVANA gene 135681237 135729258 8015.0 - 0 ENSG00000164707.15 protein_coding SLC13A4 2 OTTHUMG00000155539.3 overlapping_locus +56643 chr7 HAVANA gene 135728348 135748846 2526.0 - 0 ENSG00000189320.8 protein_coding FAM180A 2 OTTHUMG00000155537.3 overlapping_locus +56644 chr7 HAVANA gene 135927274 135927450 177.0 - 0 ENSG00000267697.1 protein_coding LUZP6 2 OTTHUMG00000180445.2 overlapping_locus +56645 chr7 HAVANA gene 135926455 135932881 804.0 + 0 ENSG00000224746.1 antisense AC015987.1 2 OTTHUMG00000155616.1 +56646 chr7 ENSEMBL gene 135960703 135960809 107.0 + 0 ENSG00000199700.1 snRNA RNU6-223P 3 +56647 chr7 HAVANA gene 135926761 135977353 3775.0 - 0 ENSG00000105887.10 protein_coding MTPN 2 OTTHUMG00000155627.1 overlapping_locus +56648 chr7 HAVANA gene 136025761 136084668 455.0 + 0 ENSG00000230649.2 lincRNA AC024084.1 2 OTTHUMG00000155617.2 +56649 chr7 ENSEMBL gene 136129980 136130081 102.0 - 0 ENSG00000206705.1 misc_RNA RF00019 3 +56650 chr7 HAVANA gene 136262558 136263017 460.0 - 0 ENSG00000236503.1 processed_pseudogene AC009784.1 1 OTTHUMG00000155626.1 pseudo_consens +56651 chr7 HAVANA gene 136092925 136437426 1285.0 + 0 ENSG00000232053.6 lincRNA AC078845.1 2 OTTHUMG00000155618.3 +56652 chr7 HAVANA gene 136485656 136488317 2662.0 + 0 ENSG00000226066.1 processed_pseudogene AC009541.1 2 OTTHUMG00000155635.1 +56653 chr7 HAVANA gene 136713871 136715188 1318.0 + 0 ENSG00000231244.1 processed_pseudogene PSMC1P3 1 OTTHUMG00000155634.1 pseudo_consens +56654 chr7 ENSEMBL gene 136903167 136903294 128.0 + 0 ENSG00000207597.1 miRNA MIR490 3 +56655 chr7 HAVANA gene 136938280 136938553 274.0 - 0 ENSG00000223657.2 processed_pseudogene KRT8P51 1 OTTHUMG00000155656.1 pseudo_consens,overlapping_locus +56656 chr7 HAVANA gene 136868669 137020255 8322.0 + 0 ENSG00000181072.11 protein_coding CHRM2 2 OTTHUMG00000155658.3 ncRNA_host +56657 chr7 HAVANA gene 137164043 137164612 570.0 + 0 ENSG00000224469.1 processed_pseudogene AC009517.1 1 OTTHUMG00000155655.1 pseudo_consens +56658 chr7 HAVANA gene 136685559 137182107 6913.0 - 0 ENSG00000234352.9 antisense AC009264.1 2 OTTHUMG00000155657.6 overlapping_locus +56659 chr7 ENSEMBL gene 137287687 137287762 76.0 + 0 ENSG00000202023.1 snoRNA RF00136 3 +56660 chr7 HAVANA gene 137318592 137326953 1890.0 + 0 ENSG00000231114.1 lincRNA AC078842.2 2 OTTHUMG00000155710.2 +56661 chr7 HAVANA gene 137227341 137343865 1713.0 - 0 ENSG00000105894.11 protein_coding PTN 1 OTTHUMG00000155709.2 +56662 chr7 HAVANA gene 137344930 137354483 553.0 - 0 ENSG00000228031.3 lincRNA AC078842.1 2 OTTHUMG00000155708.3 +56663 chr7 HAVANA gene 137513859 137513933 75.0 + 0 ENSG00000279483.2 processed_pseudogene AC090498.1 2 OTTHUMG00000192196.1 +56664 chr7 HAVANA gene 137721985 137722846 862.0 + 0 ENSG00000230383.1 processed_pseudogene AC009245.1 1 OTTHUMG00000155695.1 pseudo_consens +56665 chr7 HAVANA gene 137381037 137847092 15549.0 - 0 ENSG00000157680.15 protein_coding DGKI 2 OTTHUMG00000155697.5 +56666 chr7 HAVANA gene 137953348 137957966 577.0 + 0 ENSG00000237243.1 lincRNA AC022173.1 2 OTTHUMG00000155696.1 +56667 chr7 HAVANA gene 137874979 138002067 8788.0 - 0 ENSG00000182158.14 protein_coding CREB3L2 1 OTTHUMG00000155744.4 +56668 chr7 HAVANA gene 138022458 138024339 1239.0 + 0 ENSG00000234639.1 processed_pseudogene AC009263.1 1 OTTHUMG00000155741.2 pseudo_consens,overlapping_locus +56669 chr7 HAVANA gene 138046654 138047897 699.0 + 0 ENSG00000231923.1 processed_pseudogene AC024082.1 2 OTTHUMG00000155785.2 overlapping_locus +56670 chr7 HAVANA gene 138060056 138060293 238.0 + 0 ENSG00000231931.1 processed_pseudogene AC024082.2 1 OTTHUMG00000155788.2 pseudo_consens,overlapping_locus +56671 chr7 ENSEMBL gene 138091254 138091315 62.0 + 0 ENSG00000222514.1 misc_RNA RN7SKP223 3 +56672 chr7 HAVANA gene 138002324 138117986 3093.0 + 0 ENSG00000122787.14 protein_coding AKR1D1 1 OTTHUMG00000155787.6 ncRNA_host,overlapping_locus +56673 chr7 ENSEMBL gene 138123758 138123821 64.0 + 0 ENSG00000284028.1 miRNA MIR4468 3 +56674 chr7 HAVANA gene 138122202 138124595 1537.0 + 0 ENSG00000233951.3 processed_pseudogene RCC2P3 1 OTTHUMG00000155790.5 pseudo_consens +56675 chr7 HAVANA gene 138163440 138164637 457.0 + 0 ENSG00000225559.1 lincRNA AC083867.1 2 OTTHUMG00000155789.1 +56676 chr7 ENSEMBL gene 138175045 138175136 92.0 + 0 ENSG00000252820.1 misc_RNA RF00019 3 +56677 chr7 ENSEMBL gene 138187998 138188129 132.0 - 0 ENSG00000201465.1 snoRNA RF00432 3 +56678 chr7 HAVANA gene 138298088 138298484 397.0 - 0 ENSG00000213238.6 processed_pseudogene AC008155.2 1 OTTHUMG00000155875.2 pseudo_consens +56679 chr7 HAVANA gene 138404195 138404523 329.0 - 0 ENSG00000213237.4 processed_pseudogene AC008155.1 2 OTTHUMG00000155876.1 +56680 chr7 HAVANA gene 138440690 138442238 1549.0 + 0 ENSG00000214815.2 processed_pseudogene IMPDH1P3 1 OTTHUMG00000155791.1 pseudo_consens +56681 chr7 HAVANA gene 138490581 138491361 781.0 - 0 ENSG00000234995.1 processed_pseudogene AC013429.2 1 OTTHUMG00000155871.1 pseudo_consens +56682 chr7 HAVANA gene 138460334 138589993 9223.0 + 0 ENSG00000122779.17 protein_coding TRIM24 2 OTTHUMG00000155820.4 +56683 chr7 ENSEMBL gene 138625060 138625179 120.0 - 0 ENSG00000252188.1 snoRNA RF00561 3 +56684 chr7 HAVANA gene 138645671 138646448 422.0 - 0 ENSG00000234658.1 processed_pseudogene AC013429.1 1 OTTHUMG00000155874.3 pseudo_consens,overlapping_locus +56685 chr7 HAVANA gene 138688980 138689522 543.0 + 0 ENSG00000243099.1 processed_pseudogene AC020983.1 1 OTTHUMG00000155873.1 pseudo_consens +56686 chr7 HAVANA gene 138594285 138701352 6302.0 - 0 ENSG00000157703.15 protein_coding SVOPL 1 OTTHUMG00000155870.5 ncRNA_host,overlapping_locus +56687 chr7 HAVANA gene 138701607 138703062 722.0 + 0 ENSG00000223721.3 processed_pseudogene UQCRFS1P2 1 OTTHUMG00000155872.2 pseudo_consens +56688 chr7 HAVANA gene 138706294 138799560 4124.0 - 0 ENSG00000105929.16 protein_coding ATP6V0A4 2 OTTHUMG00000157122.6 +56689 chr7 HAVANA gene 138797952 138838101 4813.0 + 0 ENSG00000214128.10 protein_coding TMEM213 1 OTTHUMG00000157182.2 +56690 chr7 ENSEMBL gene 138876359 138876465 107.0 - 0 ENSG00000199646.1 snRNA RNU6-1272P 3 +56691 chr7 HAVANA gene 138831381 138981318 12427.0 - 0 ENSG00000122778.9 protein_coding KIAA1549 2 OTTHUMG00000157214.2 ncRNA_host +56692 chr7 HAVANA gene 139025706 139036029 1753.0 - 0 ENSG00000146858.7 protein_coding ZC3HAV1L 2 OTTHUMG00000157229.2 +56693 chr7 HAVANA gene 139049456 139050006 551.0 - 0 ENSG00000229677.1 processed_pseudogene AC018644.1 1 OTTHUMG00000157246.1 pseudo_consens,overlapping_locus +56694 chr7 HAVANA gene 139043520 139109719 8235.0 - 0 ENSG00000105939.12 protein_coding ZC3HAV1 2 OTTHUMG00000157471.1 overlapping_locus +56695 chr7 HAVANA gene 139172516 139174266 1751.0 - 0 ENSG00000239254.1 processed_pseudogene AC009220.2 1 OTTHUMG00000157624.1 pseudo_consens +56696 chr7 HAVANA gene 139133744 139191986 4999.0 + 0 ENSG00000105948.13 protein_coding TTC26 1 OTTHUMG00000157472.3 +56697 chr7 HAVANA gene 139198557 139199142 586.0 - 0 ENSG00000271537.1 processed_pseudogene AC009220.3 1 OTTHUMG00000184502.2 pseudo_consens +56698 chr7 HAVANA gene 139227537 139227828 275.0 - 0 ENSG00000228360.1 processed_pseudogene AC009220.1 1 OTTHUMG00000157245.1 pseudo_consens +56699 chr7 HAVANA gene 139228221 139228605 248.0 + 0 ENSG00000271404.1 processed_pseudogene MZT1P2 1 OTTHUMG00000184423.1 pseudo_consens +56700 chr7 HAVANA gene 139230356 139308236 16386.0 + 0 ENSG00000157741.14 protein_coding UBN2 1 OTTHUMG00000157623.5 +56701 chr7 ENSEMBL gene 139315291 139315394 104.0 - 0 ENSG00000206843.1 snRNA RNU6-206P 3 +56702 chr7 HAVANA gene 139339457 139346319 1524.0 + 0 ENSG00000164898.12 protein_coding FMC1 2 OTTHUMG00000151719.1 overlapping_locus +56703 chr7 HAVANA gene 139359032 139359566 535.0 - 0 ENSG00000273391.1 antisense AC083880.1 2 OTTHUMG00000186346.1 +56704 chr7 HAVANA gene 139341360 139422599 1661.0 + 0 ENSG00000269955.2 protein_coding C7orf55-LUC7L2 2 OTTHUMG00000151717.3 overlapping_locus +56705 chr7 HAVANA gene 139340359 139423457 6316.0 + 0 ENSG00000146963.17 protein_coding LUC7L2 1 OTTHUMG00000185163.2 overlapping_locus +56706 chr7 ENSEMBL gene 139448740 139448843 104.0 + 0 ENSG00000252332.1 snRNA RNU6-911P 3 +56707 chr7 HAVANA gene 139452690 139483712 2197.0 - 0 ENSG00000188883.4 protein_coding KLRG2 2 OTTHUMG00000157705.2 +56708 chr7 HAVANA gene 139502453 139503812 1360.0 + 0 ENSG00000253183.1 processed_pseudogene AC005531.1 1 OTTHUMG00000164899.2 pseudo_consens +56709 chr7 HAVANA gene 139534240 139534549 310.0 + 0 ENSG00000254270.1 processed_pseudogene ERHP1 1 OTTHUMG00000164901.1 pseudo_consens,overlapping_locus +56710 chr7 HAVANA gene 139523856 139544984 2527.0 + 0 ENSG00000236279.6 protein_coding CLEC2L 1 OTTHUMG00000164900.2 overlapping_locus +56711 chr7 HAVANA gene 139561570 139777778 15402.0 - 0 ENSG00000064393.15 protein_coding HIPK2 2 OTTHUMG00000157704.3 +56712 chr7 HAVANA gene 139777051 140020325 6200.0 + 0 ENSG00000059377.16 protein_coding TBXAS1 1 OTTHUMG00000157302.7 +56713 chr7 HAVANA gene 140023744 140063721 6285.0 - 0 ENSG00000059378.12 protein_coding PARP12 1 OTTHUMG00000157315.1 +56714 chr7 ENSEMBL gene 140094697 140094792 96.0 - 0 ENSG00000251728.1 misc_RNA RF00019 3 +56715 chr7 HAVANA gene 140084746 140177035 9430.0 - 0 ENSG00000006459.10 protein_coding KDM7A 2 OTTHUMG00000157327.1 ncRNA_host +56716 chr7 HAVANA gene 140177184 140179640 2457.0 + 0 ENSG00000260231.2 bidirectional_promoter_lncRNA KDM7A-DT 2 OTTHUMG00000173155.2 +56717 chr7 ENSEMBL gene 140209563 140209671 109.0 - 0 ENSG00000199971.1 snRNA RNU6-797P 3 +56718 chr7 ENSEMBL gene 140241870 140242032 163.0 + 0 ENSG00000199283.1 snRNA RNU1-58P 3 +56719 chr7 HAVANA gene 140282465 140282920 456.0 + 0 ENSG00000270512.1 processed_pseudogene AC005377.1 1 OTTHUMG00000184420.1 pseudo_consens +56720 chr7 HAVANA gene 140292752 140293339 588.0 + 0 ENSG00000241661.1 processed_pseudogene PPP1R2P6 1 OTTHUMG00000157342.1 pseudo_consens +56721 chr7 ENSEMBL gene 140370441 140370545 105.0 + 0 ENSG00000223113.1 rRNA_pseudogene RNA5SP247 3 +56722 chr7 ENSEMBL gene 140386781 140386907 127.0 - 0 ENSG00000202472.1 rRNA_pseudogene RNA5SP248 3 +56723 chr7 HAVANA gene 140293693 140404433 10588.0 - 0 ENSG00000157800.17 protein_coding SLC37A3 1 OTTHUMG00000157343.5 +56724 chr7 HAVANA gene 140404043 140426250 997.0 + 0 ENSG00000146955.10 protein_coding RAB19 2 OTTHUMG00000157410.2 +56725 chr7 HAVANA gene 140435316 140435787 472.0 - 0 ENSG00000103200.6 processed_pseudogene AC069335.1 1 OTTHUMG00000157408.2 pseudo_consens +56726 chr7 HAVANA gene 140453040 140479569 5869.0 - 0 ENSG00000133606.10 protein_coding MKRN1 1 OTTHUMG00000157412.5 +56727 chr7 ENSEMBL gene 140609847 140609955 109.0 + 0 ENSG00000201354.1 misc_RNA RF00019 3 +56728 chr7 ENSEMBL gene 140645829 140646126 298.0 + 0 ENSG00000240173.3 misc_RNA RN7SL771P 3 +56729 chr7 HAVANA gene 140640909 140669476 4071.0 + 0 ENSG00000285904.1 lincRNA AC006452.1 2 OTTHUMG00000192675.1 ncRNA_host +56730 chr7 HAVANA gene 140518420 140673993 5148.0 - 0 ENSG00000146966.12 protein_coding DENND2A 2 OTTHUMG00000157411.2 +56731 chr7 HAVANA gene 140673153 140696261 2913.0 + 0 ENSG00000133597.10 protein_coding ADCK2 2 OTTHUMG00000157409.1 overlapping_locus +56732 chr7 HAVANA gene 140695336 140697077 1648.0 - 0 ENSG00000240889.1 antisense NDUFB2-AS1 2 OTTHUMG00000157407.1 +56733 chr7 HAVANA gene 140690777 140722790 4447.0 + 0 ENSG00000090266.12 protein_coding NDUFB2 1 OTTHUMG00000157424.2 overlapping_locus +56734 chr7 ENSEMBL gene 140884072 140884178 107.0 + 0 ENSG00000271932.1 snRNA RNU6-85P 3 +56735 chr7 HAVANA gene 140719327 140924928 23432.0 - 0 ENSG00000157764.13 protein_coding BRAF 2 OTTHUMG00000157457.6 +56736 chr7 HAVANA gene 140934867 140935010 144.0 + 0 ENSG00000271611.1 processed_pseudogene AC006006.1 1 OTTHUMG00000184419.1 pseudo_consens +56737 chr7 HAVANA gene 140997952 140999800 1558.0 - 0 ENSG00000242703.1 processed_pseudogene CCT4P1 1 OTTHUMG00000157458.1 pseudo_consens +56738 chr7 HAVANA gene 141002610 141015228 5262.0 - 0 ENSG00000090263.15 protein_coding MRPS33 1 OTTHUMG00000157456.2 +56739 chr7 ENSEMBL gene 141052249 141052409 161.0 + 0 ENSG00000223212.1 snRNA RNU4-74P 3 +56740 chr7 HAVANA gene 141173043 141173216 174.0 - 0 ENSG00000261778.1 processed_pseudogene AC006362.1 2 OTTHUMG00000172759.1 +56741 chr7 HAVANA gene 141351977 141352768 478.0 + 0 ENSG00000261624.1 processed_pseudogene NDUFB10P2 1 OTTHUMG00000172760.1 pseudo_consens,overlapping_locus +56742 chr7 HAVANA gene 141392155 141396517 3445.0 - 0 ENSG00000285841.1 lincRNA AC005692.3 2 OTTHUMG00000192686.1 +56743 chr7 HAVANA gene 141414383 141416390 1439.0 - 0 ENSG00000204990.3 lincRNA AC005692.1 1 OTTHUMG00000157467.1 +56744 chr7 HAVANA gene 141429711 141431268 596.0 - 0 ENSG00000261629.1 antisense AC005692.2 2 OTTHUMG00000172761.1 +56745 chr7 HAVANA gene 141074232 141480380 10656.0 + 0 ENSG00000261115.5 protein_coding TMEM178B 2 OTTHUMG00000172737.10 overlapping_locus +56746 chr7 HAVANA gene 141512698 141513183 385.0 - 0 ENSG00000261797.1 lincRNA AC073878.2 2 OTTHUMG00000172762.1 +56747 chr7 HAVANA gene 141529203 141551304 631.0 - 0 ENSG00000261570.1 antisense AC073878.1 2 OTTHUMG00000172763.1 +56748 chr7 HAVANA gene 141551189 141655244 6547.0 + 0 ENSG00000006530.16 protein_coding AGK 2 OTTHUMG00000157499.2 +56749 chr7 HAVANA gene 141652381 141656810 770.0 - 0 ENSG00000244701.1 antisense AC004918.1 1 OTTHUMG00000157537.1 overlapping_locus +56750 chr7 HAVANA gene 141662922 141663846 925.0 - 0 ENSG00000270157.1 sense_intronic AC004918.3 2 OTTHUMG00000184086.1 overlapping_locus +56751 chr7 HAVANA gene 141656728 141702153 7356.0 - 0 ENSG00000257093.6 protein_coding KIAA1147 2 OTTHUMG00000157539.1 overlapping_locus +56752 chr7 ENSEMBL gene 141727984 141728148 165.0 + 0 ENSG00000212153.1 snRNA RNU1-82P 3 +56753 chr7 HAVANA gene 141708353 141731271 3061.0 + 0 ENSG00000214102.7 protein_coding WEE2 1 OTTHUMG00000157536.2 ncRNA_host +56754 chr7 HAVANA gene 141704338 141738346 3504.0 - 0 ENSG00000228775.7 antisense WEE2-AS1 2 OTTHUMG00000157538.1 +56755 chr7 HAVANA gene 141764097 141765197 1101.0 + 0 ENSG00000127362.2 protein_coding TAS2R3 2 OTTHUMG00000157637.1 overlapping_locus +56756 chr7 HAVANA gene 141778442 141780819 2378.0 + 0 ENSG00000127364.3 protein_coding TAS2R4 2 OTTHUMG00000157634.1 overlapping_locus +56757 chr7 HAVANA gene 141738321 141787922 4988.0 + 0 ENSG00000106028.10 protein_coding SSBP1 2 OTTHUMG00000157572.3 overlapping_locus +56758 chr7 HAVANA gene 141787815 141788640 826.0 + 0 ENSG00000270923.1 processed_pseudogene TAS2R6P 2 OTTHUMG00000184995.1 overlapping_locus +56759 chr7 HAVANA gene 141790217 141791367 1151.0 + 0 ENSG00000127366.5 protein_coding TAS2R5 2 OTTHUMG00000157632.1 +56760 chr7 HAVANA gene 141801315 141802059 745.0 - 0 ENSG00000241926.1 processed_pseudogene MTCO1P55 2 OTTHUMG00000157633.1 +56761 chr7 HAVANA gene 141802482 141803487 1006.0 - 0 ENSG00000224354.2 processed_pseudogene MTND2P5 2 OTTHUMG00000157636.1 +56762 chr7 HAVANA gene 141803701 141804652 952.0 - 0 ENSG00000239648.1 processed_pseudogene MTND1P3 2 OTTHUMG00000157635.1 +56763 chr7 HAVANA gene 141811805 141812257 453.0 + 0 ENSG00000240677.1 processed_pseudogene MYL6P4 1 OTTHUMG00000157638.1 pseudo_consens +56764 chr7 HAVANA gene 141836286 141841487 2203.0 - 0 ENSG00000165076.13 protein_coding PRSS37 2 OTTHUMG00000157174.1 +56765 chr7 HAVANA gene 141862860 141863737 878.0 + 0 ENSG00000240031.1 transcribed_unprocessed_pseudogene OR9A3P 2 OTTHUMG00000158371.3 +56766 chr7 HAVANA gene 141887148 141888092 945.0 + 0 ENSG00000237621.3 transcribed_unprocessed_pseudogene OR9A1P 2 OTTHUMG00000158540.2 +56767 chr7 HAVANA gene 141911217 141911943 727.0 + 0 ENSG00000244292.1 transcribed_unprocessed_pseudogene OR9N1P 2 OTTHUMG00000158369.3 +56768 chr7 HAVANA gene 141916399 141920625 2047.0 + 0 ENSG00000258083.2 protein_coding OR9A4 2 OTTHUMG00000158370.4 +56769 chr7 HAVANA gene 141927357 141947007 4129.0 - 0 ENSG00000258227.6 protein_coding CLEC5A 2 OTTHUMG00000157173.1 +56770 chr7 HAVANA gene 141972631 141973773 1143.0 - 0 ENSG00000257138.1 protein_coding TAS2R38 2 OTTHUMG00000158374.2 +56771 chr7 HAVANA gene 141907813 142106747 10767.0 + 0 ENSG00000257335.8 protein_coding MGAM 1 OTTHUMG00000158395.10 overlapping_locus +56772 chr7 HAVANA gene 142111749 142222324 8162.0 + 0 ENSG00000257743.8 protein_coding MGAM2 1 OTTHUMG00000158558.7 +56773 chr7 HAVANA gene 142240740 142247067 1590.0 - 0 ENSG00000240268.6 transcribed_unprocessed_pseudogene MOXD2P 2 OTTHUMG00000158566.3 +56774 chr7 HAVANA gene 142252143 142258058 1155.0 - 0 ENSG00000258223.6 protein_coding PRSS58 2 OTTHUMG00000158565.3 +56775 chr7 HAVANA gene 142265833 142272235 2319.0 - 0 ENSG00000186163.9 transcribed_unitary_pseudogene TRY2P 2 OTTHUMG00000154634.5 +56776 chr7 HAVANA gene 142285750 142288869 384.0 + 0 ENSG00000241881.1 lincRNA AC245088.1 2 OTTHUMG00000158567.3 +56777 chr7 HAVANA gene 142287251 142291597 983.0 - 0 ENSG00000277083.1 transcribed_unitary_pseudogene PRSS3P3 2 OTTHUMG00000158568.4 +56778 chr7 HAVANA gene 142299177 142299460 284.0 + 0 ENSG00000242736.1 TR_V_pseudogene TRBV1 2 OTTHUMG00000158515.1 +56779 chr7 HAVANA gene 142300924 142301432 421.0 + 0 ENSG00000226660.2 TR_V_gene TRBV2 2 OTTHUMG00000158532.5 +56780 chr7 HAVANA gene 142308542 142309048 391.0 + 0 ENSG00000237702.2 TR_V_gene TRBV3-1 2 OTTHUMG00000158526.2 +56781 chr7 HAVANA gene 142313184 142313666 373.0 + 0 ENSG00000211710.3 TR_V_gene TRBV4-1 2 OTTHUMG00000158522.4 +56782 chr7 HAVANA gene 142320677 142321544 652.0 + 0 ENSG00000211734.3 TR_V_gene TRBV5-1 2 OTTHUMG00000158520.2 +56783 chr7 HAVANA gene 142328297 142328786 401.0 + 0 ENSG00000211706.2 TR_V_gene TRBV6-1 2 OTTHUMG00000158531.2 +56784 chr7 HAVANA gene 142332182 142332701 380.0 + 0 ENSG00000211707.3 TR_V_gene TRBV7-1 2 OTTHUMG00000158529.2 +56785 chr7 HAVANA gene 142345421 142345985 455.0 + 0 ENSG00000211745.3 TR_V_gene TRBV4-2 2 OTTHUMG00000158525.2 +56786 chr7 HAVANA gene 142349152 142349664 424.0 + 0 ENSG00000283063.1 TR_V_gene TRBV6-2 2 OTTHUMG00000191598.2 +56787 chr7 HAVANA gene 142352819 142353358 394.0 + 0 ENSG00000282939.1 TR_V_gene TRBV7-2 2 OTTHUMG00000191599.2 +56788 chr7 HAVANA gene 142358639 142358917 279.0 + 0 ENSG00000243889.1 TR_V_pseudogene TRBV8-1 2 OTTHUMG00000158518.3 +56789 chr7 HAVANA gene 142372640 142372912 273.0 + 0 ENSG00000242771.1 TR_V_pseudogene TRBV5-2 2 OTTHUMG00000158537.3 +56790 chr7 HAVANA gene 142380806 142381261 365.0 + 0 ENSG00000211713.3 TR_V_gene TRBV6-4 2 OTTHUMG00000158533.3 +56791 chr7 HAVANA gene 142384329 142384841 397.0 + 0 ENSG00000211714.3 TR_V_gene TRBV7-3 2 OTTHUMG00000158528.4 +56792 chr7 HAVANA gene 142386378 142386647 270.0 + 0 ENSG00000239944.1 TR_V_pseudogene TRBV8-2 2 OTTHUMG00000158530.2 +56793 chr7 HAVANA gene 142389202 142389668 343.0 + 0 ENSG00000211715.1 TR_V_gene TRBV5-3 2 OTTHUMG00000158510.3 +56794 chr7 HAVANA gene 142391891 142392412 390.0 + 0 ENSG00000211716.2 TR_V_gene TRBV9 2 OTTHUMG00000158527.3 +56795 chr7 HAVANA gene 142399860 142400377 412.0 + 0 ENSG00000211717.3 TR_V_gene TRBV10-1 2 OTTHUMG00000158514.3 +56796 chr7 HAVANA gene 142407672 142408136 364.0 + 0 ENSG00000211720.3 TR_V_gene TRBV11-1 2 OTTHUMG00000158505.2 +56797 chr7 HAVANA gene 142415224 142415666 344.0 + 0 ENSG00000244661.1 TR_V_pseudogene TRBV12-1 2 OTTHUMG00000158507.1 +56798 chr7 HAVANA gene 142424965 142425465 395.0 + 0 ENSG00000229769.2 TR_V_gene TRBV10-2 2 OTTHUMG00000158535.3 +56799 chr7 HAVANA gene 142433895 142434394 408.0 + 0 ENSG00000241657.1 lincRNA TRBV11-2 2 OTTHUMG00000158536.3 +56800 chr7 HAVANA gene 142440883 142441325 344.0 + 0 ENSG00000211739.4 TR_V_pseudogene TRBV12-2 2 OTTHUMG00000158523.3 +56801 chr7 HAVANA gene 142450947 142451448 410.0 + 0 ENSG00000211721.2 TR_V_gene TRBV6-5 2 OTTHUMG00000158519.2 +56802 chr7 HAVANA gene 142455174 142455635 347.0 + 0 ENSG00000253409.1 TR_V_gene TRBV7-4 2 OTTHUMG00000158508.4 +56803 chr7 HAVANA gene 142462916 142463581 544.0 + 0 ENSG00000230099.2 TR_V_gene TRBV5-4 2 OTTHUMG00000158524.4 +56804 chr7 HAVANA gene 142469537 142470013 388.0 + 0 ENSG00000211724.3 TR_V_gene TRBV6-6 2 OTTHUMG00000158509.4 +56805 chr7 HAVANA gene 142474096 142474567 345.0 + 0 ENSG00000227550.2 TR_V_pseudogene TRBV7-5 2 OTTHUMG00000158506.2 +56806 chr7 HAVANA gene 142482548 142483019 350.0 + 0 ENSG00000211725.3 TR_V_gene TRBV5-5 2 OTTHUMG00000158512.4 +56807 chr7 HAVANA gene 142487863 142488295 344.0 + 0 ENSG00000253188.1 TR_V_gene TRBV6-7 2 OTTHUMG00000158511.4 +56808 chr7 HAVANA gene 142492132 142492673 392.0 + 0 ENSG00000211727.3 TR_V_gene TRBV7-6 2 OTTHUMG00000158882.4 +56809 chr7 HAVANA gene 142500028 142500534 384.0 + 0 ENSG00000211728.2 TR_V_gene TRBV5-6 2 OTTHUMG00000158873.2 +56810 chr7 HAVANA gene 142507382 142507810 341.0 + 0 ENSG00000253534.1 TR_V_gene TRBV6-8 2 OTTHUMG00000158916.4 +56811 chr7 HAVANA gene 142511626 142512127 347.0 + 0 ENSG00000253291.1 TR_V_gene TRBV7-7 2 OTTHUMG00000158872.2 +56812 chr7 HAVANA gene 142520090 142520556 343.0 + 0 ENSG00000211731.1 TR_V_gene TRBV5-7 2 OTTHUMG00000158897.2 +56813 chr7 HAVANA gene 142529290 142529762 347.0 + 0 ENSG00000278030.1 TR_V_gene TRBV7-9 2 OTTHUMG00000188552.2 +56814 chr7 HAVANA gene 142535809 142536292 374.0 + 0 ENSG00000276405.1 TR_V_gene TRBV13 2 OTTHUMG00000188553.2 +56815 chr7 HAVANA gene 142544212 142544685 368.0 + 0 ENSG00000275791.1 TR_V_gene TRBV10-3 2 OTTHUMG00000188554.2 +56816 chr7 HAVANA gene 142554836 142555318 392.0 + 0 ENSG00000276597.1 TR_V_gene TRBV11-3 2 OTTHUMG00000188555.2 +56817 chr7 HAVANA gene 142560423 142560931 409.0 + 0 ENSG00000274752.1 TR_V_gene TRBV12-3 2 OTTHUMG00000188556.2 +56818 chr7 HAVANA gene 142563740 142564245 406.0 + 0 ENSG00000276953.1 TR_V_gene TRBV12-4 2 OTTHUMG00000188557.2 +56819 chr7 HAVANA gene 142580917 142581427 411.0 + 0 ENSG00000275158.1 TR_V_gene TRBV12-5 2 OTTHUMG00000188558.2 +56820 chr7 HAVANA gene 142587868 142588359 406.0 + 0 ENSG00000275743.1 TR_V_gene TRBV14 2 OTTHUMG00000188559.2 +56821 chr7 HAVANA gene 142592928 142593473 421.0 + 0 ENSG00000276819.1 TR_V_gene TRBV15 2 OTTHUMG00000188560.2 +56822 chr7 HAVANA gene 142598016 142598469 347.0 + 0 ENSG00000275243.1 TR_V_gene TRBV16 2 OTTHUMG00000188561.2 +56823 chr7 HAVANA gene 142601628 142602360 344.0 + 0 ENSG00000277880.1 TR_V_gene TRBV17 2 OTTHUMG00000188562.2 +56824 chr7 HAVANA gene 142615716 142616415 428.0 + 0 ENSG00000276557.1 TR_V_gene TRBV18 2 OTTHUMG00000188563.2 +56825 chr7 HAVANA gene 142618849 142619532 552.0 + 0 ENSG00000211746.3 TR_V_gene TRBV19 2 OTTHUMG00000158877.4 +56826 chr7 HAVANA gene 142626649 142627399 413.0 + 0 ENSG00000211747.3 TR_V_gene TRBV20-1 2 OTTHUMG00000158899.3 +56827 chr7 HAVANA gene 142636924 142637384 348.0 + 0 ENSG00000251578.1 TR_V_pseudogene TRBV21-1 2 OTTHUMG00000158880.3 +56828 chr7 HAVANA gene 142641746 142642196 337.0 + 0 ENSG00000240578.1 TR_V_pseudogene TRBV22-1 2 OTTHUMG00000158895.1 +56829 chr7 HAVANA gene 142645961 142646467 347.0 + 0 ENSG00000211749.1 TR_V_gene TRBV23-1 2 OTTHUMG00000158920.2 +56830 chr7 HAVANA gene 142656701 142657213 381.0 + 0 ENSG00000211750.2 TR_V_gene TRBV24-1 2 OTTHUMG00000158889.3 +56831 chr7 HAVANA gene 142666272 142667718 1447.0 + 0 ENSG00000270672.1 protein_coding MTRNR2L6 2 OTTHUMG00000184977.2 +56832 chr7 HAVANA gene 142670740 142671244 381.0 + 0 ENSG00000282499.1 TR_V_gene TRBV25-1 2 OTTHUMG00000158868.4 +56833 chr7 HAVANA gene 142681415 142681869 316.0 + 0 ENSG00000239992.1 TR_V_pseudogene TRBVA 2 OTTHUMG00000158911.2 +56834 chr7 HAVANA gene 142695699 142696183 344.0 + 0 ENSG00000249912.1 TR_V_pseudogene TRBV26 2 OTTHUMG00000158928.3 +56835 chr7 HAVANA gene 142711384 142711924 408.0 + 0 ENSG00000241911.1 TR_V_pseudogene TRBVB 2 OTTHUMG00000158869.3 +56836 chr7 HAVANA gene 142715346 142715861 387.0 + 0 ENSG00000211752.3 TR_V_gene TRBV27 2 OTTHUMG00000158924.4 +56837 chr7 HAVANA gene 142720660 142721160 364.0 + 0 ENSG00000211753.4 TR_V_gene TRBV28 2 OTTHUMG00000158900.2 +56838 chr7 HAVANA gene 142722358 142722764 407.0 + 0 ENSG00000244273.1 processed_pseudogene PGBD4P1 2 OTTHUMG00000158890.3 +56839 chr7 HAVANA gene 142740206 142740894 402.0 + 0 ENSG00000232869.2 TR_V_gene TRBV29-1 2 OTTHUMG00000158898.2 +56840 chr7 HAVANA gene 142749468 142753076 1876.0 + 0 ENSG00000204983.13 protein_coding PRSS1 1 OTTHUMG00000158923.4 +56841 chr7 HAVANA gene 142760415 142763943 742.0 + 0 ENSG00000250591.3 unprocessed_pseudogene PRSS3P1 2 OTTHUMG00000158914.3 +56842 chr7 HAVANA gene 142760398 142774564 1259.0 + 0 ENSG00000275896.5 protein_coding PRSS2 2 OTTHUMG00000158904.8 +56843 chr7 HAVANA gene 142778642 142779537 896.0 - 0 ENSG00000243661.1 processed_pseudogene WBP1LP1 1 OTTHUMG00000158902.2 pseudo_consens +56844 chr7 HAVANA gene 142786213 142786224 12.0 + 0 ENSG00000282431.1 TR_D_gene TRBD1 2 OTTHUMG00000190602.2 +56845 chr7 HAVANA gene 142786880 142786927 48.0 + 0 ENSG00000282320.1 TR_J_gene TRBJ1-1 2 OTTHUMG00000190603.3 +56846 chr7 HAVANA gene 142787017 142787064 48.0 + 0 ENSG00000282420.1 TR_J_gene TRBJ1-2 2 OTTHUMG00000190604.3 +56847 chr7 HAVANA gene 142787630 142787679 50.0 + 0 ENSG00000282133.1 TR_J_gene TRBJ1-3 2 OTTHUMG00000190605.3 +56848 chr7 HAVANA gene 142788225 142788275 51.0 + 0 ENSG00000281958.1 TR_J_gene TRBJ1-4 2 OTTHUMG00000190606.3 +56849 chr7 HAVANA gene 142788498 142788547 50.0 + 0 ENSG00000282173.1 TR_J_gene TRBJ1-5 2 OTTHUMG00000190607.3 +56850 chr7 HAVANA gene 142788988 142789040 53.0 + 0 ENSG00000282780.1 TR_J_gene TRBJ1-6 2 OTTHUMG00000190608.3 +56851 chr7 HAVANA gene 142791694 142793368 760.0 + 0 ENSG00000211751.9 TR_C_gene TRBC1 2 OTTHUMG00000190609.1 +56852 chr7 HAVANA gene 142796365 142796414 50.0 + 0 ENSG00000211764.1 TR_J_gene TRBJ2-1 2 OTTHUMG00000158918.3 +56853 chr7 HAVANA gene 142796560 142796610 51.0 + 0 ENSG00000211765.1 TR_J_gene TRBJ2-2 2 OTTHUMG00000158870.3 +56854 chr7 HAVANA gene 142796697 142796742 46.0 + 0 ENSG00000211766.1 TR_J_gene TRBJ2-2P 2 OTTHUMG00000158876.2 +56855 chr7 HAVANA gene 142796847 142796895 49.0 + 0 ENSG00000211767.1 TR_J_gene TRBJ2-3 2 OTTHUMG00000158896.2 +56856 chr7 HAVANA gene 142796998 142797047 50.0 + 0 ENSG00000211768.1 TR_J_gene TRBJ2-4 2 OTTHUMG00000158888.3 +56857 chr7 HAVANA gene 142797119 142797166 48.0 + 0 ENSG00000211769.1 TR_J_gene TRBJ2-5 2 OTTHUMG00000158874.3 +56858 chr7 HAVANA gene 142797239 142797291 53.0 + 0 ENSG00000211770.1 TR_J_gene TRBJ2-6 2 OTTHUMG00000158913.3 +56859 chr7 HAVANA gene 142797456 142797502 47.0 + 0 ENSG00000211771.1 TR_J_gene TRBJ2-7 2 OTTHUMG00000158906.3 +56860 chr7 HAVANA gene 142801041 142802748 758.0 + 0 ENSG00000211772.11 TR_C_gene TRBC2 2 OTTHUMG00000158912.3 +56861 chr7 HAVANA gene 142812586 142813399 447.0 - 0 ENSG00000237254.2 TR_V_gene TRBV30 2 OTTHUMG00000158907.2 +56862 chr7 HAVANA gene 142855061 142871094 5325.0 + 0 ENSG00000106123.11 protein_coding EPHB6 2 OTTHUMG00000155707.4 +56863 chr7 HAVANA gene 142871203 142885762 11925.0 - 0 ENSG00000165125.19 protein_coding TRPV6 2 OTTHUMG00000157158.7 +56864 chr7 HAVANA gene 142875836 142892743 263.0 + 0 ENSG00000224970.2 antisense AC245427.1 1 OTTHUMG00000157156.2 +56865 chr7 HAVANA gene 142908101 142933808 3686.0 - 0 ENSG00000127412.6 protein_coding TRPV5 2 OTTHUMG00000157157.4 +56866 chr7 HAVANA gene 142939343 142940868 923.0 + 0 ENSG00000165131.6 protein_coding LLCFC1 2 OTTHUMG00000152664.1 +56867 chr7 HAVANA gene 142941114 142962681 3923.0 - 0 ENSG00000197993.8 protein_coding KEL 2 OTTHUMG00000157159.11 +56868 chr7 HAVANA gene 143026158 143027195 1038.0 - 0 ENSG00000179468.5 protein_coding OR9A2 2 OTTHUMG00000158386.1 +56869 chr7 HAVANA gene 143047213 143047580 281.0 - 0 ENSG00000239293.1 unprocessed_pseudogene OR9P1P 2 OTTHUMG00000154319.2 +56870 chr7 HAVANA gene 143052320 143053347 1028.0 + 0 ENSG00000225781.1 protein_coding OR6V1 2 OTTHUMG00000158385.1 +56871 chr7 HAVANA gene 143062330 143063585 1141.0 - 0 ENSG00000179420.11 transcribed_unprocessed_pseudogene OR6W1P 2 OTTHUMG00000158389.2 +56872 chr7 HAVANA gene 143132077 143139746 585.0 + 0 ENSG00000159763.3 protein_coding PIP 2 OTTHUMG00000152635.1 +56873 chr7 HAVANA gene 143183419 143184435 1017.0 + 0 ENSG00000236398.2 protein_coding TAS2R39 2 OTTHUMG00000152636.3 +56874 chr7 HAVANA gene 143220468 143222267 1800.0 - 0 ENSG00000268170.2 antisense AC073342.2 2 OTTHUMG00000187176.1 +56875 chr7 HAVANA gene 143222037 143223079 1043.0 + 0 ENSG00000221937.4 protein_coding TAS2R40 2 OTTHUMG00000152638.1 +56876 chr7 HAVANA gene 143224042 143224234 193.0 - 0 ENSG00000279223.1 TEC AC073342.3 2 OTTHUMG00000173153.1 +56877 chr7 HAVANA gene 143244093 143270854 4228.0 + 0 ENSG00000197448.13 protein_coding GSTK1 2 OTTHUMG00000152637.7 +56878 chr7 HAVANA gene 143255264 143287380 930.0 - 0 ENSG00000231840.1 antisense AC073342.1 2 OTTHUMG00000152673.1 +56879 chr7 HAVANA gene 143279957 143288048 2564.0 + 0 ENSG00000178826.10 protein_coding TMEM139 2 OTTHUMG00000152652.2 +56880 chr7 ENSEMBL gene 143290615 143290910 296.0 + 0 ENSG00000239419.3 misc_RNA RN7SL535P 3 +56881 chr7 ENSEMBL gene 143298516 143298814 299.0 + 0 ENSG00000240322.3 misc_RNA RN7SL481P 3 +56882 chr7 HAVANA gene 143288215 143307696 8020.0 + 0 ENSG00000106144.19 protein_coding CASP2 2 OTTHUMG00000023641.4 ncRNA_host +56883 chr7 HAVANA gene 143312684 143313061 378.0 - 0 ENSG00000231531.5 processed_pseudogene HINT1P1 1 OTTHUMG00000152696.1 pseudo_consens +56884 chr7 HAVANA gene 143316126 143352083 3306.0 + 0 ENSG00000188037.11 protein_coding CLCN1 2 OTTHUMG00000152695.2 +56885 chr7 HAVANA gene 143353400 143362770 6430.0 - 0 ENSG00000159784.17 protein_coding FAM131B 2 OTTHUMG00000152697.3 +56886 chr7 HAVANA gene 143363899 143364229 331.0 + 0 ENSG00000272619.1 lincRNA AC093673.2 2 OTTHUMG00000186356.1 +56887 chr7 HAVANA gene 143379692 143380495 648.0 - 0 ENSG00000232533.1 antisense AC093673.1 2 OTTHUMG00000152694.1 +56888 chr7 ENSEMBL gene 143382686 143382800 115.0 + 0 ENSG00000278449.1 miRNA MIR6892 3 +56889 chr7 HAVANA gene 143381080 143391111 3482.0 + 0 ENSG00000159840.15 protein_coding ZYX 1 OTTHUMG00000023822.10 ncRNA_host +56890 chr7 HAVANA gene 143390289 143408892 4733.0 - 0 ENSG00000146904.8 protein_coding EPHA1 1 OTTHUMG00000155894.2 +56891 chr7 HAVANA gene 143437034 143437973 940.0 + 0 ENSG00000234066.1 unitary_pseudogene TAS2R62P 2 OTTHUMG00000154892.1 overlapping_locus +56892 chr7 HAVANA gene 143443453 143444409 957.0 + 0 ENSG00000185899.1 protein_coding TAS2R60 2 OTTHUMG00000154891.2 overlapping_locus +56893 chr7 HAVANA gene 143477873 143478796 924.0 + 0 ENSG00000221855.1 protein_coding TAS2R41 2 OTTHUMG00000155892.2 overlapping_locus +56894 chr7 HAVANA gene 143488462 143489402 941.0 - 0 ENSG00000236853.2 unitary_pseudogene OR2R1P 2 OTTHUMG00000154318.2 +56895 chr7 HAVANA gene 143509256 143519469 2898.0 - 0 ENSG00000176510.5 polymorphic_pseudogene OR10AC1 2 OTTHUMG00000155896.4 +56896 chr7 HAVANA gene 143407813 143523449 5316.0 + 0 ENSG00000229153.5 antisense EPHA1-AS1 2 OTTHUMG00000155893.1 overlapping_locus +56897 chr7 HAVANA gene 143532749 143533164 416.0 - 0 ENSG00000229977.2 processed_pseudogene AC073264.1 1 OTTHUMG00000155891.1 pseudo_consens +56898 chr7 HAVANA gene 143545186 143546735 1217.0 - 0 ENSG00000229877.1 processed_pseudogene PAICSP5 1 OTTHUMG00000155897.2 pseudo_consens +56899 chr7 HAVANA gene 143571801 143574387 2587.0 + 0 ENSG00000271079.1 protein_coding CTAGE15 2 OTTHUMG00000153233.2 retrogene +56900 chr7 ENSEMBL gene 143574746 143574848 103.0 + 0 ENSG00000252037.1 snRNA RNU6-162P 3 +56901 chr7 HAVANA gene 143578907 143579072 166.0 + 0 ENSG00000230556.1 processed_pseudogene AC073264.2 2 OTTHUMG00000153234.1 +56902 chr7 HAVANA gene 143598039 143604839 2233.0 + 0 ENSG00000223459.6 unprocessed_pseudogene TCAF1P1 2 OTTHUMG00000022870.4 +56903 chr7 HAVANA gene 143620943 143645675 2579.0 + 0 ENSG00000283537.2 transcribed_unprocessed_pseudogene AC073264.3 2 OTTHUMG00000192563.1 +56904 chr7 HAVANA gene 143639230 143647646 2577.0 - 0 ENSG00000283528.2 protein_coding TCAF2C 2 OTTHUMG00000191659.1 +56905 chr7 HAVANA gene 143620952 143730409 6409.0 + 0 ENSG00000170379.20 protein_coding TCAF2 2 OTTHUMG00000153232.6 +56906 chr7 ENSEMBL gene 143754628 143754730 103.0 - 0 ENSG00000252523.1 snRNA RNU6-267P 3 +56907 chr7 HAVANA gene 143755089 143757696 2608.0 - 0 ENSG00000271321.1 protein_coding CTAGE6 2 OTTHUMG00000157770.2 +56908 chr7 HAVANA gene 143782667 143784284 1280.0 + 0 ENSG00000241136.1 processed_pseudogene PAICSP6 1 OTTHUMG00000157767.1 pseudo_consens +56909 chr7 HAVANA gene 143796295 143796720 426.0 + 0 ENSG00000232145.1 processed_pseudogene AC099548.1 1 OTTHUMG00000157244.1 pseudo_consens +56910 chr7 HAVANA gene 143800732 143817973 2421.0 + 0 ENSG00000159860.7 transcribed_unprocessed_pseudogene TCAF2P1 2 OTTHUMG00000153235.3 +56911 chr7 HAVANA gene 143761790 143836933 3625.0 - 0 ENSG00000253882.6 transcribed_unprocessed_pseudogene AC099548.2 2 OTTHUMG00000157769.1 +56912 chr7 HAVANA gene 143851375 143902198 6310.0 - 0 ENSG00000198420.9 protein_coding TCAF1 2 OTTHUMG00000157773.3 +56913 chr7 HAVANA gene 143935166 143936279 1114.0 + 0 ENSG00000221910.2 protein_coding OR2F2 2 OTTHUMG00000157768.1 +56914 chr7 HAVANA gene 143979121 143980225 698.0 - 0 ENSG00000270729.1 processed_pseudogene AC004853.1 1 OTTHUMG00000184500.1 pseudo_consens +56915 chr7 HAVANA gene 143980905 143981820 916.0 + 0 ENSG00000273377.1 unprocessed_pseudogene OR2Q1P 2 OTTHUMG00000059327.2 +56916 chr7 HAVANA gene 143985142 143986651 1510.0 + 0 ENSG00000242280.1 processed_pseudogene SLC16A1P1 1 OTTHUMG00000157772.1 pseudo_consens,overlapping_locus +56917 chr7 HAVANA gene 143954844 143997312 5109.0 + 0 ENSG00000213215.5 protein_coding OR2F1 2 OTTHUMG00000157771.2 +56918 chr7 HAVANA gene 144000320 144008793 5196.0 + 0 ENSG00000221813.4 protein_coding OR6B1 2 OTTHUMG00000157765.2 +56919 chr7 HAVANA gene 144048948 144058845 8681.0 + 0 ENSG00000221836.3 protein_coding OR2A5 2 OTTHUMG00000158006.2 +56920 chr7 HAVANA gene 144069811 144075870 1853.0 + 0 ENSG00000221933.3 protein_coding OR2A25 2 OTTHUMG00000158013.2 +56921 chr7 HAVANA gene 144077721 144077825 105.0 + 0 ENSG00000239967.1 unprocessed_pseudogene OR2A41P 2 OTTHUMG00000158014.1 +56922 chr7 HAVANA gene 144086278 144098953 4172.0 + 0 ENSG00000221858.3 protein_coding OR2A12 2 OTTHUMG00000157996.2 +56923 chr7 HAVANA gene 144109514 144110564 1051.0 + 0 ENSG00000221989.2 protein_coding OR2A2 2 OTTHUMG00000158001.1 +56924 chr7 HAVANA gene 144118461 144119360 900.0 - 0 ENSG00000239981.1 unprocessed_pseudogene OR2A15P 2 OTTHUMG00000157999.1 +56925 chr7 HAVANA gene 144123176 144131188 2220.0 + 0 ENSG00000221938.5 protein_coding OR2A14 2 OTTHUMG00000158003.2 +56926 chr7 HAVANA gene 144142009 144142938 930.0 + 0 ENSG00000273234.1 unprocessed_pseudogene OR2A13P 2 OTTHUMG00000154312.1 +56927 chr7 HAVANA gene 144153486 144158905 1776.0 + 0 ENSG00000183122.5 transcribed_unprocessed_pseudogene OR2A3P 2 OTTHUMG00000158011.2 +56928 chr7 HAVANA gene 144176740 144177142 403.0 + 0 ENSG00000240621.1 unprocessed_pseudogene OR2AO1P 2 OTTHUMG00000158012.1 +56929 chr7 HAVANA gene 144183466 144186053 2588.0 + 0 ENSG00000225932.3 protein_coding CTAGE4 2 OTTHUMG00000157997.1 retrogene +56930 chr7 HAVANA gene 144186083 144195655 2431.0 - 0 ENSG00000213214.4 protein_coding ARHGEF35 2 OTTHUMG00000158010.1 +56931 chr7 HAVANA gene 144228244 144239605 4946.0 - 0 ENSG00000212807.2 protein_coding OR2A42 2 OTTHUMG00000157995.3 +56932 chr7 HAVANA gene 144250045 144256244 3520.0 - 0 ENSG00000170356.9 transcribed_unprocessed_pseudogene OR2A20P 2 OTTHUMG00000158000.2 overlapping_locus +56933 chr7 HAVANA gene 144257663 144264792 2152.0 - 0 ENSG00000243896.4 protein_coding OR2A7 2 OTTHUMG00000158002.2 overlapping_locus +56934 chr7 HAVANA gene 144266701 144269288 2588.0 - 0 ENSG00000244693.1 protein_coding CTAGE8 2 OTTHUMG00000158009.1 overlapping_locus,retrogene +56935 chr7 HAVANA gene 144194858 144280547 2249.0 + 0 ENSG00000244198.6 antisense AC004889.1 2 OTTHUMG00000158007.2 +56936 chr7 HAVANA gene 144272445 144286966 4532.0 - 0 ENSG00000204959.4 unprocessed_pseudogene ARHGEF34P 2 OTTHUMG00000158008.1 overlapping_locus +56937 chr7 HAVANA gene 144294480 144300934 3337.0 + 0 ENSG00000228960.6 transcribed_unprocessed_pseudogene OR2A9P 2 OTTHUMG00000157998.2 +56938 chr7 HAVANA gene 144312464 144322668 4632.0 + 0 ENSG00000221970.2 protein_coding OR2A1 2 OTTHUMG00000158005.3 +56939 chr7 HAVANA gene 144251264 144355707 2187.0 - 0 ENSG00000284644.1 antisense AC074386.1 2 OTTHUMG00000192268.1 overlapping_locus +56940 chr7 HAVANA gene 144300395 144356181 2532.0 - 0 ENSG00000244479.7 antisense OR2A1-AS1 2 OTTHUMG00000158050.1 overlapping_locus +56941 chr7 HAVANA gene 144355288 144380632 5818.0 + 0 ENSG00000050327.14 protein_coding ARHGEF5 2 OTTHUMG00000158004.3 +56942 chr7 HAVANA gene 144397240 144410227 2076.0 - 0 ENSG00000106410.15 protein_coding NOBOX 1 OTTHUMG00000158051.4 +56943 chr7 HAVANA gene 144434826 144435314 489.0 - 0 ENSG00000242978.1 processed_pseudogene PPIAP83 1 OTTHUMG00000158052.1 pseudo_consens +56944 chr7 ENSEMBL gene 144451681 144451817 137.0 + 0 ENSG00000221507.1 snRNA RNU6ATAC40P 3 +56945 chr7 HAVANA gene 144647186 144648575 1390.0 - 0 ENSG00000243746.1 processed_pseudogene EEF1A1P10 1 OTTHUMG00000158061.1 pseudo_consens,overlapping_locus +56946 chr7 HAVANA gene 144451941 144836395 8442.0 - 0 ENSG00000196511.14 protein_coding TPK1 2 OTTHUMG00000152774.11 overlapping_locus +56947 chr7 ENSEMBL gene 144849755 144850084 330.0 - 0 ENSG00000200673.1 misc_RNA RN7SKP174 3 +56948 chr7 HAVANA gene 145005058 145006135 1078.0 + 0 ENSG00000236343.1 processed_pseudogene EI24P4 1 OTTHUMG00000152717.1 pseudo_consens +56949 chr7 HAVANA gene 145009961 145010993 1033.0 + 0 ENSG00000214035.3 processed_pseudogene AC073310.1 1 OTTHUMG00000152722.1 pseudo_consens +56950 chr7 HAVANA gene 145039999 145040941 943.0 - 0 ENSG00000225918.1 processed_pseudogene RPL7P59 1 OTTHUMG00000152721.1 pseudo_consens +56951 chr7 HAVANA gene 145269514 145270384 871.0 + 0 ENSG00000226592.1 processed_pseudogene AC004911.1 2 OTTHUMG00000152718.1 +56952 chr7 HAVANA gene 145583197 145584817 1621.0 + 0 ENSG00000231839.1 processed_pseudogene DPY19L4P2 1 OTTHUMG00000152720.1 pseudo_consens +56953 chr7 HAVANA gene 145675882 145681369 672.0 - 0 ENSG00000230746.1 lincRNA AC006007.1 2 OTTHUMG00000152719.1 +56954 chr7 HAVANA gene 146050062 146050366 305.0 + 0 ENSG00000280144.1 TEC AC073308.1 2 OTTHUMG00000173150.1 +56955 chr7 ENSEMBL gene 146208665 146208819 155.0 - 0 ENSG00000274127.1 misc_RNA RF02271 3 +56956 chr7 ENSEMBL gene 146311720 146311822 103.0 + 0 ENSG00000274118.1 misc_RNA RF00019 3 +56957 chr7 HAVANA gene 147080934 147097609 2145.0 - 0 ENSG00000236795.1 antisense AC006004.1 2 OTTHUMG00000152744.1 +56958 chr7 HAVANA gene 147146342 147146756 415.0 + 0 ENSG00000226857.1 transcribed_processed_pseudogene DUTP3 1 OTTHUMG00000152746.1 pseudo_consens,overlapping_locus +56959 chr7 HAVANA gene 147167344 147167572 229.0 + 0 ENSG00000232391.1 processed_pseudogene RANP2 1 OTTHUMG00000152745.1 pseudo_consens,overlapping_locus +56960 chr7 ENSEMBL gene 147378017 147378121 105.0 - 0 ENSG00000221442.1 miRNA MIR548F4 3 +56961 chr7 HAVANA gene 147671711 147673143 1116.0 + 0 ENSG00000230190.1 sense_intronic AC005518.1 2 OTTHUMG00000152747.1 overlapping_locus +56962 chr7 HAVANA gene 147704294 147704575 282.0 - 0 ENSG00000270634.1 processed_pseudogene AC005518.2 1 OTTHUMG00000184499.1 pseudo_consens +56963 chr7 ENSEMBL gene 147831770 147831877 108.0 + 0 ENSG00000207318.1 snRNA RNU6-1184P 3 +56964 chr7 ENSEMBL gene 147849884 147849982 99.0 + 0 ENSG00000251936.1 rRNA_pseudogene RNA5SP249 3 +56965 chr7 ENSEMBL gene 147940007 147940301 295.0 + 0 ENSG00000242266.3 misc_RNA RN7SL456P 3 +56966 chr7 ENSEMBL gene 148389645 148389859 215.0 + 0 ENSG00000199370.2 snoRNA RF00012 3 +56967 chr7 HAVANA gene 146116002 148420998 16668.0 + 0 ENSG00000174469.21 protein_coding CNTNAP2 1 OTTHUMG00000152743.10 ncRNA_host,overlapping_locus +56968 chr7 ENSEMBL gene 148438309 148438577 269.0 + 0 ENSG00000243374.3 misc_RNA RN7SL72P 3 +56969 chr7 HAVANA gene 148445786 148446299 514.0 + 0 ENSG00000274133.1 processed_pseudogene AC083849.1 2 OTTHUMG00000187706.1 +56970 chr7 HAVANA gene 148473599 148503458 1501.0 - 0 ENSG00000283504.1 lincRNA AC006974.1 2 OTTHUMG00000191687.1 +56971 chr7 HAVANA gene 148543677 148572177 1227.0 - 0 ENSG00000283648.1 lincRNA AC006974.2 2 OTTHUMG00000191688.1 +56972 chr7 HAVANA gene 148580401 148580799 399.0 + 0 ENSG00000213210.4 processed_pseudogene AC005229.2 1 OTTHUMG00000152755.1 pseudo_consens +56973 chr7 HAVANA gene 148590565 148615860 1354.0 + 0 ENSG00000170279.2 protein_coding C7orf33 2 OTTHUMG00000152756.1 +56974 chr7 HAVANA gene 148637179 148637587 409.0 + 0 ENSG00000213209.2 processed_pseudogene AC005229.1 1 OTTHUMG00000152775.1 pseudo_consens +56975 chr7 HAVANA gene 148649547 148650240 323.0 + 0 ENSG00000270200.1 processed_pseudogene AC005229.3 1 OTTHUMG00000184415.1 pseudo_consens +56976 chr7 HAVANA gene 148696467 148698664 2198.0 - 0 ENSG00000273314.1 antisense AC005229.4 2 OTTHUMG00000186357.1 +56977 chr7 HAVANA gene 148697914 148801036 3548.0 + 0 ENSG00000055130.15 protein_coding CUL1 2 OTTHUMG00000152776.3 +56978 chr7 ENSEMBL gene 148821012 148821073 62.0 + 0 ENSG00000251712.3 snRNA RNU7-20P 3 +56979 chr7 ENSEMBL gene 148876018 148876286 269.0 + 0 ENSG00000275586.1 misc_RNA RF00017 3 +56980 chr7 HAVANA gene 148807383 148884321 4522.0 - 0 ENSG00000106462.10 protein_coding EZH2 2 OTTHUMG00000158973.2 +56981 chr7 ENSEMBL gene 148890226 148890513 288.0 + 0 ENSG00000239468.3 misc_RNA RN7SL569P 3 +56982 chr7 ENSEMBL gene 148963315 148963410 96.0 + 0 ENSG00000252316.1 misc_RNA RNY4 3 +56983 chr7 ENSEMBL gene 148983755 148983856 102.0 + 0 ENSG00000202354.1 misc_RNA RNY3 3 +56984 chr7 ENSEMBL gene 148987136 148987248 113.0 - 0 ENSG00000201098.1 misc_RNA RNY1 3 +56985 chr7 HAVANA gene 148987527 148989432 1906.0 + 0 ENSG00000281189.1 lincRNA GHET1 2 OTTHUMG00000189524.1 +56986 chr7 HAVANA gene 149003062 149028641 3277.0 - 0 ENSG00000155660.10 protein_coding PDIA4 1 OTTHUMG00000150248.2 +56987 chr7 ENSEMBL gene 149033057 149033167 111.0 + 0 ENSG00000202528.1 snRNA RNU6-650P 3 +56988 chr7 HAVANA gene 149053961 149054173 213.0 + 0 ENSG00000234565.1 processed_pseudogene COX6B1P1 1 OTTHUMG00000151504.1 pseudo_consens +56989 chr7 HAVANA gene 149069643 149090782 3271.0 - 0 ENSG00000197362.14 protein_coding ZNF786 2 OTTHUMG00000158975.1 +56990 chr7 ENSEMBL gene 149125690 149125986 297.0 - 0 ENSG00000240877.3 misc_RNA RN7SL521P 3 +56991 chr7 HAVANA gene 149102784 149126346 3687.0 - 0 ENSG00000204947.8 protein_coding ZNF425 1 OTTHUMG00000158971.2 ncRNA_host +56992 chr7 HAVANA gene 149126416 149182802 6041.0 + 0 ENSG00000197024.8 protein_coding ZNF398 2 OTTHUMG00000158970.2 +56993 chr7 HAVANA gene 149191043 149191223 181.0 - 0 ENSG00000239719.1 processed_pseudogene AC004890.1 1 OTTHUMG00000158966.1 pseudo_consens +56994 chr7 HAVANA gene 149195485 149226248 3832.0 + 0 ENSG00000170265.11 protein_coding ZNF282 2 OTTHUMG00000158974.3 +56995 chr7 HAVANA gene 149239651 149255609 3182.0 + 0 ENSG00000170260.8 protein_coding ZNF212 2 OTTHUMG00000158968.2 +56996 chr7 HAVANA gene 149275619 149277992 1095.0 - 0 ENSG00000271664.1 unprocessed_pseudogene AC004890.3 1 OTTHUMG00000184497.1 pseudo_consens +56997 chr7 HAVANA gene 149262171 149297302 6726.0 + 0 ENSG00000204946.9 protein_coding ZNF783 2 OTTHUMG00000158969.2 overlapping_locus +56998 chr7 HAVANA gene 149285281 149297312 4271.0 + 0 ENSG00000244560.7 transcribed_unprocessed_pseudogene AC004890.2 2 OTTHUMG00000155009.5 overlapping_locus +56999 chr7 HAVANA gene 149321865 149322092 228.0 - 0 ENSG00000231397.1 processed_pseudogene AC004941.2 1 OTTHUMG00000151502.1 pseudo_consens +57000 chr7 HAVANA gene 149334024 149334857 834.0 + 0 ENSG00000215311.3 processed_pseudogene NPM1P12 1 OTTHUMG00000151505.1 pseudo_consens +57001 chr7 HAVANA gene 149398204 149401456 3120.0 + 0 ENSG00000228151.1 antisense AC004941.1 2 OTTHUMG00000151503.1 +57002 chr7 HAVANA gene 149422675 149424890 2216.0 + 0 ENSG00000261842.1 lincRNA AC073314.1 2 OTTHUMG00000173255.1 +57003 chr7 HAVANA gene 149431363 149461123 3233.0 - 0 ENSG00000196453.7 protein_coding ZNF777 2 OTTHUMG00000158967.1 +57004 chr7 HAVANA gene 149472696 149497817 8403.0 - 0 ENSG00000181220.16 protein_coding ZNF746 2 OTTHUMG00000158972.4 +57005 chr7 HAVANA gene 149547154 149624752 4012.0 - 0 ENSG00000133624.13 transcribed_unprocessed_pseudogene ZNF767P 2 OTTHUMG00000158976.2 +57006 chr7 HAVANA gene 149714781 149734575 5337.0 + 0 ENSG00000133619.17 protein_coding KRBA1 1 OTTHUMG00000157886.8 +57007 chr7 HAVANA gene 149764182 149773479 2734.0 - 0 ENSG00000181444.12 protein_coding ZNF467 2 OTTHUMG00000157883.1 +57008 chr7 HAVANA gene 149776042 149833979 21144.0 + 0 ENSG00000197558.11 protein_coding SSPO 2 OTTHUMG00000157884.6 reference_genome_error +57009 chr7 HAVANA gene 149851572 149852170 599.0 + 0 ENSG00000280149.1 TEC AC004877.2 2 OTTHUMG00000158096.1 overlapping_locus +57010 chr7 HAVANA gene 149858400 149862492 4093.0 - 0 ENSG00000273419.1 antisense AC004877.1 2 OTTHUMG00000186358.1 +57011 chr7 HAVANA gene 149838367 149867479 8430.0 + 0 ENSG00000106479.10 protein_coding ZNF862 1 OTTHUMG00000158093.3 overlapping_locus +57012 chr7 HAVANA gene 149867697 149880610 3291.0 - 0 ENSG00000204934.10 antisense ATP6V0E2-AS1 2 OTTHUMG00000158095.3 +57013 chr7 HAVANA gene 149881359 149881580 222.0 - 0 ENSG00000273293.1 lincRNA AC093458.1 2 OTTHUMG00000186371.1 +57014 chr7 HAVANA gene 149881477 149882105 629.0 + 0 ENSG00000279536.1 TEC AC093458.2 2 OTTHUMG00000173263.1 +57015 chr7 HAVANA gene 149872968 149891204 6751.0 + 0 ENSG00000171130.18 protein_coding ATP6V0E2 2 OTTHUMG00000158094.5 +57016 chr7 HAVANA gene 149890739 149891416 678.0 + 0 ENSG00000273011.1 lincRNA AC092681.3 2 OTTHUMG00000186372.1 +57017 chr7 HAVANA gene 149891191 149909704 291.0 - 0 ENSG00000224016.2 unprocessed_pseudogene AC092681.1 2 OTTHUMG00000158112.2 +57018 chr7 HAVANA gene 150000752 150005124 3044.0 + 0 ENSG00000260555.1 lincRNA AC092681.2 2 OTTHUMG00000173149.1 +57019 chr7 HAVANA gene 150047609 150047854 246.0 - 0 ENSG00000276538.1 unprocessed_pseudogene AC092666.2 2 OTTHUMG00000187707.1 +57020 chr7 HAVANA gene 150040521 150076655 1380.0 + 0 ENSG00000241449.5 lincRNA AC092666.1 2 OTTHUMG00000158149.1 +57021 chr7 HAVANA gene 150243916 150323725 6460.0 - 0 ENSG00000106526.10 protein_coding ACTR3C 2 OTTHUMG00000158323.4 +57022 chr7 HAVANA gene 150329789 150332721 2933.0 + 0 ENSG00000188707.5 protein_coding ZBED6CL 2 OTTHUMG00000158328.1 overlapping_locus +57023 chr7 HAVANA gene 150322639 150338150 2735.0 + 0 ENSG00000127399.14 protein_coding LRRC61 2 OTTHUMG00000158326.1 overlapping_locus +57024 chr7 HAVANA gene 150338317 150341674 1921.0 - 0 ENSG00000106538.9 protein_coding RARRES2 1 OTTHUMG00000158325.3 +57025 chr7 HAVANA gene 150337483 150343346 1693.0 + 0 ENSG00000261305.2 sense_overlapping AC005586.2 2 OTTHUMG00000173217.2 +57026 chr7 HAVANA gene 150363777 150372590 577.0 - 0 ENSG00000240449.1 antisense AC005586.1 1 OTTHUMG00000158322.1 +57027 chr7 HAVANA gene 150368189 150374044 4649.0 + 0 ENSG00000214022.11 protein_coding REPIN1 1 OTTHUMG00000158330.4 overlapping_locus +57028 chr7 HAVANA gene 150379854 150383885 420.0 - 0 ENSG00000239377.1 antisense AC073111.1 1 OTTHUMG00000158329.1 +57029 chr7 HAVANA gene 150368790 150396915 635.0 + 0 ENSG00000284041.1 protein_coding AC073111.3 2 OTTHUMG00000192212.1 overlapping_locus +57030 chr7 HAVANA gene 150379335 150398631 2385.0 + 0 ENSG00000196456.11 protein_coding ZNF775 1 OTTHUMG00000191597.1 overlapping_locus +57031 chr7 HAVANA gene 150379329 150410597 1623.0 + 0 ENSG00000284048.2 processed_transcript AC073111.4 2 OTTHUMG00000192067.1 overlapping_locus +57032 chr7 HAVANA gene 150400702 150412470 4333.0 + 0 ENSG00000284691.1 protein_coding AC073111.5 2 OTTHUMG00000158324.3 overlapping_locus +57033 chr7 HAVANA gene 150433654 150448140 2171.0 + 0 ENSG00000242258.1 lincRNA LINC00996 2 OTTHUMG00000158321.1 +57034 chr7 HAVANA gene 150450630 150479392 4184.0 + 0 ENSG00000171115.3 protein_coding GIMAP8 2 OTTHUMG00000158327.1 +57035 chr7 HAVANA gene 150484061 150485135 1075.0 - 0 ENSG00000271582.1 processed_pseudogene AC073111.2 1 OTTHUMG00000184495.1 pseudo_consens +57036 chr7 HAVANA gene 150512559 150513839 1281.0 - 0 ENSG00000213205.3 processed_pseudogene STRADBP1 1 OTTHUMG00000157619.1 pseudo_consens +57037 chr7 HAVANA gene 150514830 150521073 1256.0 + 0 ENSG00000179144.4 protein_coding GIMAP7 2 OTTHUMG00000157626.1 +57038 chr7 HAVANA gene 150541754 150542098 345.0 - 0 ENSG00000243853.1 processed_pseudogene ALDH7A1P3 1 OTTHUMG00000157476.1 pseudo_consens +57039 chr7 HAVANA gene 150567277 150573955 2193.0 + 0 ENSG00000133574.9 protein_coding GIMAP4 2 OTTHUMG00000157475.4 +57040 chr7 HAVANA gene 150603561 150604644 1084.0 - 0 ENSG00000271568.1 processed_pseudogene AC069304.3 1 OTTHUMG00000184493.1 pseudo_consens +57041 chr7 HAVANA gene 150614061 150614764 704.0 - 0 ENSG00000232361.3 processed_pseudogene AC069304.1 1 OTTHUMG00000157474.1 pseudo_consens +57042 chr7 HAVANA gene 150625375 150632648 3913.0 - 0 ENSG00000133561.15 protein_coding GIMAP6 2 OTTHUMG00000159137.3 +57043 chr7 HAVANA gene 150676833 150677918 435.0 - 0 ENSG00000270990.1 processed_pseudogene AC069304.2 1 OTTHUMG00000184491.2 pseudo_consens +57044 chr7 HAVANA gene 150685697 150693641 2097.0 + 0 ENSG00000106560.10 protein_coding GIMAP2 2 OTTHUMG00000157488.1 +57045 chr7 HAVANA gene 150716557 150724284 4846.0 + 0 ENSG00000213203.2 protein_coding GIMAP1 2 OTTHUMG00000157489.2 overlapping_locus +57046 chr7 HAVANA gene 150716668 150743646 2148.0 + 0 ENSG00000281887.3 protein_coding GIMAP1-GIMAP5 2 OTTHUMG00000189885.3 overlapping_locus +57047 chr7 HAVANA gene 150746893 150747728 836.0 - 0 ENSG00000177590.7 processed_pseudogene GIMAP3P 2 OTTHUMG00000158113.1 +57048 chr7 HAVANA gene 150722253 150750033 6031.0 + 0 ENSG00000196329.11 protein_coding GIMAP5 2 OTTHUMG00000157542.5 overlapping_locus +57049 chr7 HAVANA gene 150749736 150750094 359.0 + 0 ENSG00000241134.3 processed_pseudogene BET1P1 1 OTTHUMG00000157576.1 pseudo_consens,overlapping_locus +57050 chr7 HAVANA gene 150791285 150801360 1979.0 - 0 ENSG00000106565.17 protein_coding TMEM176B 1 OTTHUMG00000157577.2 +57051 chr7 HAVANA gene 150800403 150805120 3479.0 + 0 ENSG00000002933.8 protein_coding TMEM176A 2 OTTHUMG00000158114.5 +57052 chr7 HAVANA gene 150824627 150861504 3824.0 + 0 ENSG00000002726.20 protein_coding AOC1 2 OTTHUMG00000158306.2 +57053 chr7 HAVANA gene 150944961 150978315 5877.0 - 0 ENSG00000055118.14 protein_coding KCNH2 2 OTTHUMG00000158341.4 +57054 chr7 HAVANA gene 150990995 151014588 5953.0 + 0 ENSG00000164867.10 protein_coding NOS3 1 OTTHUMG00000158343.4 +57055 chr7 HAVANA gene 151012209 151024499 6391.0 - 0 ENSG00000181652.19 protein_coding ATG9B 1 OTTHUMG00000158634.9 +57056 chr7 HAVANA gene 151028781 151029754 511.0 - 0 ENSG00000243433.1 antisense AC010973.1 2 OTTHUMG00000158684.1 +57057 chr7 HAVANA gene 151028422 151047782 9336.0 + 0 ENSG00000197150.12 protein_coding ABCB8 1 OTTHUMG00000158686.4 +57058 chr7 HAVANA gene 151048292 151052756 2748.0 + 0 ENSG00000213199.7 protein_coding ASIC3 2 OTTHUMG00000158685.2 +57059 chr7 HAVANA gene 151053812 151058530 2938.0 - 0 ENSG00000164885.12 protein_coding CDK5 2 OTTHUMG00000158414.4 +57060 chr7 HAVANA gene 151057210 151076527 7590.0 + 0 ENSG00000164889.13 protein_coding SLC4A2 1 OTTHUMG00000158443.4 +57061 chr7 HAVANA gene 151074742 151076530 1230.0 - 0 ENSG00000244151.1 antisense AC010973.2 2 OTTHUMG00000158693.1 +57062 chr7 HAVANA gene 151076593 151080866 3805.0 - 0 ENSG00000164896.19 protein_coding FASTK 2 OTTHUMG00000158694.3 +57063 chr7 HAVANA gene 151081080 151083546 2005.0 - 0 ENSG00000164897.12 protein_coding TMUB1 2 OTTHUMG00000158621.2 +57064 chr7 HAVANA gene 151085831 151144436 11032.0 + 0 ENSG00000133612.18 protein_coding AGAP3 1 OTTHUMG00000158724.7 +57065 chr7 HAVANA gene 151148589 151174745 1467.0 - 0 ENSG00000164900.4 protein_coding GBX1 2 OTTHUMG00000158751.4 +57066 chr7 HAVANA gene 151175698 151187832 2375.0 - 0 ENSG00000146926.10 protein_coding ASB10 2 OTTHUMG00000157013.4 +57067 chr7 HAVANA gene 151190873 151205496 2826.0 - 0 ENSG00000278685.4 protein_coding IQCA1L 2 OTTHUMG00000156140.5 +57068 chr7 HAVANA gene 151207837 151210378 463.0 - 0 ENSG00000285480.1 protein_coding AC021097.3 2 OTTHUMG00000192397.1 overlapping_locus +57069 chr7 HAVANA gene 151207837 151227166 2185.0 - 0 ENSG00000285292.1 protein_coding AC021097.2 2 OTTHUMG00000154570.4 overlapping_locus +57070 chr7 HAVANA gene 151212490 151227230 4177.0 - 0 ENSG00000033050.8 protein_coding ABCF2 2 OTTHUMG00000192398.1 overlapping_locus +57071 chr7 ENSEMBL gene 151238421 151238538 118.0 + 0 ENSG00000284191.1 miRNA MIR671 3 +57072 chr7 HAVANA gene 151232489 151238827 4205.0 + 0 ENSG00000033100.16 protein_coding CHPF2 1 OTTHUMG00000157380.6 ncRNA_host +57073 chr7 HAVANA gene 151240399 151240972 574.0 + 0 ENSG00000272661.1 antisense AC021097.1 2 OTTHUMG00000186373.1 +57074 chr7 HAVANA gene 151249325 151254390 216.0 + 0 ENSG00000243018.1 antisense AC005486.1 2 OTTHUMG00000157379.1 +57075 chr7 HAVANA gene 151238764 151277896 5198.0 - 0 ENSG00000082014.16 protein_coding SMARCD3 2 OTTHUMG00000157431.7 +57076 chr7 HAVANA gene 151341699 151378449 5411.0 + 0 ENSG00000013374.16 protein_coding NUB1 2 OTTHUMG00000157365.5 +57077 chr7 HAVANA gene 151375909 151410727 4044.0 - 0 ENSG00000187260.15 protein_coding WDR86 1 OTTHUMG00000150764.5 +57078 chr7 HAVANA gene 151409161 151413354 1354.0 + 0 ENSG00000243836.5 processed_transcript WDR86-AS1 2 OTTHUMG00000157360.1 +57079 chr7 ENSEMBL gene 151433489 151433639 151.0 - 0 ENSG00000265810.1 miRNA MIR3907 3 +57080 chr7 HAVANA gene 151427683 151439124 564.0 + 0 ENSG00000241456.1 antisense AC005996.1 1 OTTHUMG00000157352.1 +57081 chr7 HAVANA gene 151428835 151440813 2716.0 - 0 ENSG00000127377.9 protein_coding CRYGN 2 OTTHUMG00000157353.3 ncRNA_host +57082 chr7 ENSEMBL gene 151464650 151464938 289.0 - 0 ENSG00000241959.3 misc_RNA RN7SL76P 3 +57083 chr7 HAVANA gene 151501878 151503463 1586.0 + 0 ENSG00000240132.1 processed_pseudogene ETF1P2 1 OTTHUMG00000157354.1 pseudo_consens +57084 chr7 HAVANA gene 151466012 151520120 3535.0 - 0 ENSG00000106615.9 protein_coding RHEB 2 OTTHUMG00000157330.3 +57085 chr7 HAVANA gene 151806490 151810820 2390.0 + 0 ENSG00000242048.3 processed_transcript AC093583.1 2 OTTHUMG00000157325.3 +57086 chr7 HAVANA gene 151556111 151877125 6740.0 - 0 ENSG00000106617.13 protein_coding PRKAG2 2 OTTHUMG00000157324.4 +57087 chr7 HAVANA gene 151877042 151879223 1163.0 + 0 ENSG00000239911.2 antisense PRKAG2-AS1 2 OTTHUMG00000157323.3 +57088 chr7 ENSEMBL gene 151900275 151900374 100.0 + 0 ENSG00000212219.1 snRNA RNU6-604P 3 +57089 chr7 ENSEMBL gene 151916331 151916418 88.0 + 0 ENSG00000222941.2 misc_RNA RF00019 3 +57090 chr7 HAVANA gene 151950386 151954985 585.0 - 0 ENSG00000227562.1 antisense AC074257.1 2 OTTHUMG00000157305.1 +57091 chr7 HAVANA gene 151956379 152019934 3325.0 + 0 ENSG00000106648.13 protein_coding GALNTL5 1 OTTHUMG00000157306.3 +57092 chr7 ENSEMBL gene 152025194 152025472 279.0 - 0 ENSG00000276213.1 misc_RNA RF00017 3 +57093 chr7 HAVANA gene 152120001 152121717 673.0 - 0 ENSG00000229591.1 antisense AC006017.1 1 OTTHUMG00000157258.1 +57094 chr7 HAVANA gene 152025674 152122347 8295.0 + 0 ENSG00000178234.12 protein_coding GALNT11 1 OTTHUMG00000157251.14 +57095 chr7 HAVANA gene 152128879 152129686 808.0 + 0 ENSG00000213188.3 processed_pseudogene YBX1P4 1 OTTHUMG00000157256.1 pseudo_consens +57096 chr7 HAVANA gene 152366763 152367015 253.0 + 0 ENSG00000270405.1 processed_pseudogene AC104692.2 2 OTTHUMG00000184413.1 +57097 chr7 HAVANA gene 152367171 152367260 90.0 + 0 ENSG00000204894.4 processed_pseudogene AC104692.1 1 OTTHUMG00000157524.1 pseudo_consens +57098 chr7 HAVANA gene 152367519 152368661 1143.0 + 0 ENSG00000241007.1 processed_pseudogene SEPT7P6 1 OTTHUMG00000157523.1 pseudo_consens +57099 chr7 ENSEMBL gene 152402780 152402893 114.0 + 0 ENSG00000253088.1 misc_RNA RF00019 3 +57100 chr7 HAVANA gene 152134922 152436005 20114.0 - 0 ENSG00000055609.17 protein_coding KMT2C 1 OTTHUMG00000150553.6 +57101 chr7 HAVANA gene 152435695 152443176 1637.0 + 0 ENSG00000241735.2 transcribed_processed_pseudogene FABP5P3 1 OTTHUMG00000157257.2 pseudo_consens +57102 chr7 HAVANA gene 152445477 152447150 1674.0 + 0 ENSG00000020219.9 processed_pseudogene CCT8L1P 2 OTTHUMG00000157297.2 +57103 chr7 HAVANA gene 152463786 152465549 1764.0 + 0 ENSG00000261455.1 lincRNA LINC01003 2 OTTHUMG00000173415.1 +57104 chr7 HAVANA gene 152590641 152590941 297.0 - 0 ENSG00000231139.1 unprocessed_pseudogene AC104843.2 1 OTTHUMG00000151468.1 pseudo_consens +57105 chr7 ENSEMBL gene 152592973 152593091 119.0 - 0 ENSG00000199404.1 rRNA RNA5SP250 3 +57106 chr7 ENSEMBL gene 152592973 152593091 119.0 - 0 ENSG00000285912.1 rRNA_pseudogene AC104843.3 3 +57107 chr7 HAVANA gene 152602213 152602892 319.0 - 0 ENSG00000225416.1 processed_pseudogene AC104843.1 1 OTTHUMG00000151469.2 pseudo_consens +57108 chr7 ENSEMBL gene 152609313 152609434 122.0 + 0 ENSG00000212590.1 snoRNA RF00568 3 +57109 chr7 HAVANA gene 152644779 152676165 4853.0 - 0 ENSG00000196584.2 protein_coding XRCC2 2 OTTHUMG00000151470.1 +57110 chr7 HAVANA gene 152749079 152749735 657.0 + 0 ENSG00000214003.2 processed_pseudogene ATP5PBP3 1 OTTHUMG00000151466.1 pseudo_consens +57111 chr7 ENSEMBL gene 152757662 152757951 290.0 + 0 ENSG00000244328.3 misc_RNA RN7SL845P 3 +57112 chr7 HAVANA gene 152759749 152855378 6024.0 + 0 ENSG00000133627.17 protein_coding ACTR3B 2 OTTHUMG00000151463.3 +57113 chr7 HAVANA gene 153144313 153144588 276.0 - 0 ENSG00000224104.1 processed_pseudogene AC079809.1 1 OTTHUMG00000151465.1 pseudo_consens +57114 chr7 HAVANA gene 153395484 153396921 993.0 + 0 ENSG00000285524.1 lincRNA AC073236.1 2 OTTHUMG00000192692.1 +57115 chr7 HAVANA gene 153355365 153413981 4987.0 - 0 ENSG00000234722.4 lincRNA LINC01287 2 OTTHUMG00000151464.4 +57116 chr7 HAVANA gene 153449429 153449875 447.0 + 0 ENSG00000233489.1 processed_pseudogene PAXBP1P1 1 OTTHUMG00000151475.1 pseudo_consens +57117 chr7 HAVANA gene 153968665 153968826 162.0 - 0 ENSG00000226509.1 processed_pseudogene AC005588.1 2 OTTHUMG00000151521.1 +57118 chr7 HAVANA gene 154026287 154038604 698.0 - 0 ENSG00000270114.1 antisense AC006019.3 2 OTTHUMG00000151520.1 +57119 chr7 HAVANA gene 154055585 154059561 2470.0 - 0 ENSG00000203335.4 antisense AC006019.1 2 OTTHUMG00000184017.1 +57120 chr7 HAVANA gene 154092201 154096043 3044.0 - 0 ENSG00000233363.1 antisense AC006019.2 2 OTTHUMG00000151522.1 +57121 chr7 HAVANA gene 154838388 154865483 664.0 - 0 ENSG00000236408.1 antisense AC073336.1 1 OTTHUMG00000157286.1 +57122 chr7 HAVANA gene 153887097 154894285 13574.0 + 0 ENSG00000130226.16 protein_coding DPP6 1 OTTHUMG00000151511.2 +57123 chr7 HAVANA gene 154951226 154952188 963.0 + 0 ENSG00000272760.1 antisense AC093726.1 2 OTTHUMG00000186374.1 +57124 chr7 HAVANA gene 154928485 154952188 7553.0 + 0 ENSG00000214106.8 antisense PAXIP1-AS2 2 OTTHUMG00000151324.3 +57125 chr7 HAVANA gene 154956429 154957107 679.0 + 0 ENSG00000273183.1 antisense AC093726.2 2 OTTHUMG00000186375.1 +57126 chr7 HAVANA gene 154943687 155003084 9643.0 - 0 ENSG00000157212.18 protein_coding PAXIP1 1 OTTHUMG00000151322.2 +57127 chr7 HAVANA gene 155003448 155005703 2256.0 + 0 ENSG00000273344.1 lincRNA PAXIP1-AS1 2 OTTHUMG00000186376.1 +57128 chr7 HAVANA gene 155067067 155071557 2730.0 - 0 ENSG00000220575.7 antisense HTR5A-AS1 1 OTTHUMG00000151326.1 +57129 chr7 HAVANA gene 155074599 155074748 150.0 + 0 ENSG00000283339.1 unprocessed_pseudogene AC093726.3 2 OTTHUMG00000191823.1 +57130 chr7 HAVANA gene 155070324 155087392 4901.0 + 0 ENSG00000157219.4 protein_coding HTR5A 2 OTTHUMG00000151327.2 +57131 chr7 HAVANA gene 155106062 155106400 339.0 - 0 ENSG00000274637.1 unprocessed_pseudogene AC092628.2 2 OTTHUMG00000187709.1 +57132 chr7 HAVANA gene 155106400 155106651 252.0 + 0 ENSG00000228806.1 unprocessed_pseudogene AC092628.1 2 OTTHUMG00000151329.1 +57133 chr7 ENSEMBL gene 155181881 155182184 304.0 + 0 ENSG00000201066.1 misc_RNA RN7SKP280 3 +57134 chr7 HAVANA gene 155196563 155198455 744.0 - 0 ENSG00000217825.2 lincRNA AC099552.1 1 OTTHUMG00000151325.1 +57135 chr7 HAVANA gene 155204147 155205189 367.0 + 0 ENSG00000228521.2 lincRNA AC099552.3 2 OTTHUMG00000151323.1 +57136 chr7 HAVANA gene 155222903 155223851 949.0 + 0 ENSG00000278998.1 TEC AC099552.4 2 OTTHUMG00000173309.1 +57137 chr7 HAVANA gene 155267299 155268052 456.0 + 0 ENSG00000225612.1 lincRNA AC099552.2 2 OTTHUMG00000151328.1 +57138 chr7 HAVANA gene 155295918 155297541 1624.0 - 0 ENSG00000273117.1 lincRNA AC144652.1 2 OTTHUMG00000186379.1 +57139 chr7 HAVANA gene 155297776 155310235 3650.0 + 0 ENSG00000186480.12 protein_coding INSIG1 1 OTTHUMG00000151330.5 +57140 chr7 HAVANA gene 155356985 155367934 2456.0 - 0 ENSG00000204960.6 lincRNA BLACE 1 OTTHUMG00000151351.1 +57141 chr7 HAVANA gene 155382076 155396356 1551.0 + 0 ENSG00000218672.1 lincRNA AC008060.1 1 OTTHUMG00000151350.1 +57142 chr7 HAVANA gene 155399922 155401782 1861.0 + 0 ENSG00000260426.1 sense_overlapping AC008060.4 2 OTTHUMG00000173317.1 +57143 chr7 HAVANA gene 155421206 155457099 534.0 - 0 ENSG00000236544.1 lincRNA AC008060.3 2 OTTHUMG00000151348.1 +57144 chr7 HAVANA gene 155458129 155464831 3395.0 + 0 ENSG00000164778.4 protein_coding EN2 2 OTTHUMG00000151354.1 +57145 chr7 HAVANA gene 155510283 155518623 468.0 + 0 ENSG00000227365.1 antisense AC008060.2 2 OTTHUMG00000151347.1 +57146 chr7 HAVANA gene 155474206 155555450 3615.0 - 0 ENSG00000146910.12 protein_coding CNPY1 2 OTTHUMG00000151353.3 overlapping_locus +57147 chr7 HAVANA gene 155474256 155644406 5436.0 - 0 ENSG00000283128.1 processed_transcript AC009403.2 2 OTTHUMG00000191755.1 overlapping_locus +57148 chr7 HAVANA gene 155611231 155645205 2031.0 - 0 ENSG00000216895.9 antisense AC009403.1 2 OTTHUMG00000151355.2 overlapping_locus +57149 chr7 HAVANA gene 155644451 155781485 13132.0 + 0 ENSG00000184863.10 protein_coding RBM33 1 OTTHUMG00000150260.7 +57150 chr7 HAVANA gene 155799986 155812273 5038.0 - 0 ENSG00000164690.7 protein_coding SHH 2 OTTHUMG00000151349.2 +57151 chr7 HAVANA gene 155962632 155966343 2536.0 + 0 ENSG00000204876.4 lincRNA AC021218.1 2 OTTHUMG00000151352.1 +57152 chr7 ENSEMBL gene 156186122 156186223 102.0 - 0 ENSG00000207061.1 misc_RNA RF00019 3 +57153 chr7 HAVANA gene 156263547 156263802 256.0 + 0 ENSG00000270584.1 processed_pseudogene AC093813.1 1 OTTHUMG00000184411.1 pseudo_consens +57154 chr7 HAVANA gene 156432523 156435833 432.0 - 0 ENSG00000228569.1 lincRNA AC073133.1 2 OTTHUMG00000151447.1 +57155 chr7 HAVANA gene 156437789 156445588 2698.0 - 0 ENSG00000233878.1 lincRNA AC073133.2 2 OTTHUMG00000151444.1 +57156 chr7 HAVANA gene 156540491 156541103 613.0 + 0 ENSG00000279418.1 lincRNA LINC00244 2 OTTHUMG00000189434.1 +57157 chr7 HAVANA gene 156633355 156633787 433.0 + 0 ENSG00000234450.1 processed_pseudogene AC005534.2 1 OTTHUMG00000151439.2 pseudo_consens +57158 chr7 HAVANA gene 156472196 156640654 3964.0 - 0 ENSG00000182648.11 lincRNA LINC01006 2 OTTHUMG00000157237.1 +57159 chr7 HAVANA gene 156654185 156657693 742.0 - 0 ENSG00000224903.1 antisense AC005534.1 2 OTTHUMG00000151509.1 +57160 chr7 HAVANA gene 156640281 156677130 4371.0 + 0 ENSG00000105982.16 protein_coding RNF32 2 OTTHUMG00000151440.3 +57161 chr7 ENSEMBL gene 156872078 156872218 141.0 + 0 ENSG00000206938.1 snRNA RNU4-31P 3 +57162 chr7 HAVANA gene 156668946 156893230 11819.0 - 0 ENSG00000105983.20 protein_coding LMBR1 2 OTTHUMG00000151510.7 +57163 chr7 HAVANA gene 156944721 156945645 531.0 + 0 ENSG00000230033.1 lincRNA AC006357.1 2 OTTHUMG00000157190.1 +57164 chr7 HAVANA gene 156949723 156973182 7788.0 + 0 ENSG00000146909.7 protein_coding NOM1 2 OTTHUMG00000152639.2 +57165 chr7 HAVANA gene 157006307 157007132 374.0 + 0 ENSG00000235029.1 antisense MNX1-AS2 2 OTTHUMG00000187957.1 +57166 chr7 HAVANA gene 156994051 157010651 4202.0 - 0 ENSG00000130675.14 protein_coding MNX1 1 OTTHUMG00000157181.4 +57167 chr7 HAVANA gene 157010805 157016426 1041.0 + 0 ENSG00000243479.3 lincRNA MNX1-AS1 2 OTTHUMG00000188695.1 +57168 chr7 HAVANA gene 157057709 157058514 432.0 - 0 ENSG00000236102.2 lincRNA AC006967.2 1 OTTHUMG00000157191.2 +57169 chr7 HAVANA gene 157087955 157088543 589.0 - 0 ENSG00000229365.3 processed_pseudogene AC006967.1 1 OTTHUMG00000157192.1 pseudo_consens +57170 chr7 HAVANA gene 157109980 157111072 1093.0 + 0 ENSG00000269446.2 lincRNA AC006967.3 2 OTTHUMG00000187178.1 +57171 chr7 HAVANA gene 157192368 157192832 465.0 + 0 ENSG00000225224.1 processed_pseudogene RPS27AP12 1 OTTHUMG00000157241.1 pseudo_consens,overlapping_locus +57172 chr7 HAVANA gene 157197600 157198511 766.0 - 0 ENSG00000236018.2 processed_pseudogene AC004898.1 1 OTTHUMG00000157180.1 pseudo_consens +57173 chr7 HAVANA gene 157263022 157263229 208.0 - 0 ENSG00000224629.1 processed_pseudogene AC004975.1 1 OTTHUMG00000157238.2 pseudo_consens +57174 chr7 HAVANA gene 157138913 157269372 9220.0 + 0 ENSG00000009335.17 protein_coding UBE3C 2 OTTHUMG00000157239.1 overlapping_locus +57175 chr7 HAVANA gene 157281536 157282686 565.0 - 0 ENSG00000229660.1 lincRNA AC004975.2 2 OTTHUMG00000157240.1 +57176 chr7 HAVANA gene 157335381 157417439 14981.0 + 0 ENSG00000105993.14 protein_coding DNAJB6 2 OTTHUMG00000157242.6 +57177 chr7 HAVANA gene 157466231 157499716 4049.0 + 0 ENSG00000234210.1 lincRNA AC006372.3 2 OTTHUMG00000152642.1 +57178 chr7 HAVANA gene 157501322 157503577 546.0 + 0 ENSG00000223872.1 lincRNA AC006372.1 2 OTTHUMG00000152645.1 +57179 chr7 HAVANA gene 157513294 157518658 1582.0 + 0 ENSG00000233191.2 processed_transcript AC006372.2 2 OTTHUMG00000152640.2 +57180 chr7 HAVANA gene 157525783 157527325 1543.0 + 0 ENSG00000280266.1 TEC AC006372.4 2 OTTHUMG00000187179.1 +57181 chr7 ENSEMBL gene 157574336 157574422 87.0 - 0 ENSG00000207960.1 miRNA MIR153-2 3 +57182 chr7 HAVANA gene 157614023 157618765 3456.0 + 0 ENSG00000222012.1 antisense AC005481.1 1 OTTHUMG00000152643.2 +57183 chr7 HAVANA gene 157739010 157740456 613.0 - 0 ENSG00000231515.1 sense_intronic AC006003.1 1 OTTHUMG00000153023.1 overlapping_locus +57184 chr7 HAVANA gene 157854529 157863011 1581.0 + 0 ENSG00000233038.6 antisense AC011899.2 2 OTTHUMG00000152644.2 +57185 chr7 HAVANA gene 157868538 157869154 617.0 + 0 ENSG00000272839.1 antisense AC011899.3 2 OTTHUMG00000186392.1 +57186 chr7 HAVANA gene 157987169 157989456 1462.0 + 0 ENSG00000285821.1 antisense AC011899.4 2 OTTHUMG00000193249.1 +57187 chr7 HAVANA gene 158027373 158031128 3600.0 + 0 ENSG00000231980.1 antisense AC011899.1 2 OTTHUMG00000152647.2 +57188 chr7 ENSEMBL gene 158532718 158532813 96.0 - 0 ENSG00000207637.1 miRNA MIR595 3 +57189 chr7 HAVANA gene 158537495 158539879 589.0 + 0 ENSG00000225365.1 antisense AC078942.1 1 OTTHUMG00000152641.1 +57190 chr7 HAVANA gene 157539056 158587788 4833.0 - 0 ENSG00000155093.18 protein_coding PTPRN2 2 OTTHUMG00000152646.4 ncRNA_host,overlapping_locus +57191 chr7 HAVANA gene 158590629 158591120 394.0 + 0 ENSG00000232715.1 antisense LINC01022 2 OTTHUMG00000152648.1 +57192 chr7 ENSEMBL gene 158591616 158591696 81.0 + 0 ENSG00000265598.1 miRNA MIR5707 3 +57193 chr7 HAVANA gene 158623188 158623449 262.0 - 0 ENSG00000224324.1 processed_pseudogene THAP5P1 1 OTTHUMG00000153022.1 pseudo_consens +57194 chr7 HAVANA gene 158631311 158704829 6988.0 - 0 ENSG00000146918.19 protein_coding NCAPG2 2 OTTHUMG00000151438.4 +57195 chr7 HAVANA gene 158719730 158720161 432.0 + 0 ENSG00000228030.2 processed_pseudogene AC019084.1 1 OTTHUMG00000151445.1 pseudo_consens +57196 chr7 HAVANA gene 158730995 158830253 7098.0 - 0 ENSG00000117868.15 protein_coding ESYT2 2 OTTHUMG00000151436.1 +57197 chr7 HAVANA gene 158856578 158956747 6667.0 + 0 ENSG00000126870.15 protein_coding WDR60 2 OTTHUMG00000151443.4 +57198 chr7 HAVANA gene 159006522 159030195 9158.0 + 0 ENSG00000231419.6 processed_transcript LINC00689 1 OTTHUMG00000151442.2 +57199 chr7 HAVANA gene 159028175 159144957 5222.0 - 0 ENSG00000106018.13 protein_coding VIPR2 1 OTTHUMG00000151446.3 +57200 chr7 HAVANA gene 159231435 159233377 1120.0 + 0 ENSG00000229435.2 unprocessed_pseudogene PIP5K1P2 1 OTTHUMG00000151313.1 pseudo_consens +57201 chr8 HAVANA gene 64091 64320 137.0 - 0 ENSG00000253620.2 processed_pseudogene AC144568.1 2 OTTHUMG00000163938.2 +57202 chr8 HAVANA gene 72601 79775 972.0 + 0 ENSG00000253896.3 lincRNA AC144568.2 2 OTTHUMG00000163939.3 +57203 chr8 HAVANA gene 150584 150728 145.0 - 0 ENSG00000254193.1 processed_pseudogene AC131281.2 2 OTTHUMG00000163942.1 +57204 chr8 HAVANA gene 155274 155481 208.0 + 0 ENSG00000253612.1 processed_pseudogene WBP1LP3 1 OTTHUMG00000163907.2 pseudo_consens +57205 chr8 HAVANA gene 166049 167043 995.0 - 0 ENSG00000176269.3 protein_coding OR4F21 2 OTTHUMG00000163908.1 +57206 chr8 HAVANA gene 200385 200562 178.0 - 0 ENSG00000255464.1 unprocessed_pseudogene SEPT14P8 2 OTTHUMG00000160541.5 overlapping_locus +57207 chr8 HAVANA gene 202660 202897 164.0 - 0 ENSG00000253166.2 unprocessed_pseudogene AC131281.1 2 OTTHUMG00000163919.2 +57208 chr8 HAVANA gene 213186 232231 1023.0 - 0 ENSG00000223508.5 transcribed_processed_pseudogene RPL23AP53 1 OTTHUMG00000163943.2 pseudo_consens +57209 chr8 HAVANA gene 233119 233692 574.0 + 0 ENSG00000272812.1 sense_intronic AC004908.2 2 OTTHUMG00000185884.1 overlapping_locus +57210 chr8 HAVANA gene 234347 234887 541.0 - 0 ENSG00000272240.1 antisense AC004908.1 2 OTTHUMG00000185392.1 +57211 chr8 HAVANA gene 237045 237669 625.0 + 0 ENSG00000273402.1 antisense AC004908.3 2 OTTHUMG00000185885.1 overlapping_locus +57212 chr8 HAVANA gene 264315 264672 358.0 + 0 ENSG00000254104.2 processed_pseudogene AC136777.2 2 OTTHUMG00000163921.2 +57213 chr8 HAVANA gene 232137 264703 6008.0 + 0 ENSG00000172748.13 protein_coding ZNF596 1 OTTHUMG00000086931.8 overlapping_locus +57214 chr8 HAVANA gene 311133 331026 369.0 - 0 ENSG00000249868.5 lincRNA AC136777.1 2 OTTHUMG00000163924.2 +57215 chr8 HAVANA gene 375931 383174 4531.0 - 0 ENSG00000182366.9 lincRNA FAM87A 2 OTTHUMG00000165513.3 +57216 chr8 HAVANA gene 450714 451343 630.0 - 0 ENSG00000272293.1 antisense AC083964.1 2 OTTHUMG00000185394.1 +57217 chr8 HAVANA gene 406428 477967 11438.0 + 0 ENSG00000147364.16 protein_coding FBXO25 2 OTTHUMG00000090341.8 +57218 chr8 HAVANA gene 486117 488512 2396.0 - 0 ENSG00000279852.1 TEC AC083964.2 2 OTTHUMG00000172751.1 +57219 chr8 HAVANA gene 489792 545781 3613.0 - 0 ENSG00000180190.11 protein_coding TDRP 2 OTTHUMG00000163593.2 +57220 chr8 HAVANA gene 725188 725877 316.0 - 0 ENSG00000254207.1 sense_intronic AC100797.1 1 OTTHUMG00000163707.1 overlapping_locus +57221 chr8 HAVANA gene 614746 738106 9726.0 - 0 ENSG00000104714.13 protein_coding ERICH1 1 OTTHUMG00000129163.4 overlapping_locus +57222 chr8 HAVANA gene 738548 740374 1827.0 + 0 ENSG00000282375.1 lincRNA AC100797.4 2 OTTHUMG00000190614.1 overlapping_locus +57223 chr8 HAVANA gene 891251 893112 470.0 - 0 ENSG00000282759.1 lincRNA AC026950.2 2 OTTHUMG00000191400.1 +57224 chr8 HAVANA gene 1018757 1019704 948.0 + 0 ENSG00000282692.1 lincRNA AC129915.3 2 OTTHUMG00000190599.1 +57225 chr8 HAVANA gene 1246789 1248760 446.0 - 0 ENSG00000254160.1 lincRNA AC110288.1 2 OTTHUMG00000163653.1 +57226 chr8 HAVANA gene 1296034 1302607 3049.0 - 0 ENSG00000275427.1 lincRNA AF067845.2 2 OTTHUMG00000163636.3 +57227 chr8 HAVANA gene 1368642 1369833 1192.0 - 0 ENSG00000260721.1 lincRNA AF067845.1 2 OTTHUMG00000173256.1 +57228 chr8 HAVANA gene 1377867 1380307 480.0 + 0 ENSG00000281961.1 lincRNA AF067845.4 2 OTTHUMG00000190601.1 overlapping_locus +57229 chr8 HAVANA gene 1373685 1381394 437.0 + 0 ENSG00000282160.1 lincRNA AF067845.5 2 OTTHUMG00000190600.1 overlapping_locus +57230 chr8 HAVANA gene 1565509 1622417 2062.0 - 0 ENSG00000253267.5 antisense DLGAP2-AS1 2 OTTHUMG00000163600.1 +57231 chr8 HAVANA gene 737596 1708474 15159.0 + 0 ENSG00000198010.12 protein_coding DLGAP2 2 OTTHUMG00000163599.5 +57232 chr8 HAVANA gene 1726273 1726557 285.0 + 0 ENSG00000283576.1 processed_pseudogene AC100810.6 2 OTTHUMG00000191778.1 +57233 chr8 HAVANA gene 1730206 1731452 927.0 + 0 ENSG00000254265.1 processed_pseudogene AC100810.2 1 OTTHUMG00000163657.1 pseudo_consens +57234 chr8 HAVANA gene 1758208 1760447 2240.0 - 0 ENSG00000282021.1 lincRNA AC100810.3 2 OTTHUMG00000190740.1 +57235 chr8 HAVANA gene 1761990 1764502 1322.0 - 0 ENSG00000253982.1 antisense AC100810.1 2 OTTHUMG00000163625.1 +57236 chr8 ENSEMBL gene 1801125 1801192 68.0 + 0 ENSG00000283858.1 miRNA MIR3674 3 +57237 chr8 HAVANA gene 1755778 1801711 9459.0 + 0 ENSG00000182372.9 protein_coding CLN8 2 OTTHUMG00000090343.9 ncRNA_host,overlapping_locus +57238 chr8 ENSEMBL gene 1817231 1817307 77.0 + 0 ENSG00000207826.1 miRNA MIR596 3 +57239 chr8 HAVANA gene 1763888 1958627 7139.0 + 0 ENSG00000283239.1 protein_coding KBTBD11-OT1 2 OTTHUMG00000191735.1 ncRNA_host,overlapping_locus +57240 chr8 HAVANA gene 1823976 1958641 10792.0 + 0 ENSG00000104728.15 protein_coding ARHGEF10 2 OTTHUMG00000163626.2 overlapping_locus +57241 chr8 HAVANA gene 1957921 1963131 2982.0 - 0 ENSG00000285957.1 antisense AC019257.7 2 OTTHUMG00000192765.1 +57242 chr8 HAVANA gene 1971181 1974637 2011.0 - 0 ENSG00000253764.2 lincRNA AC019257.1 2 OTTHUMG00000163628.2 +57243 chr8 HAVANA gene 1974818 1975314 497.0 + 0 ENSG00000270988.1 lincRNA AC019257.2 2 OTTHUMG00000185113.1 overlapping_locus +57244 chr8 HAVANA gene 1971397 1976478 815.0 + 0 ENSG00000253696.2 lincRNA KBTBD11-OT1 2 OTTHUMG00000163627.2 overlapping_locus +57245 chr8 HAVANA gene 1973878 2006936 6710.0 + 0 ENSG00000176595.3 protein_coding KBTBD11 2 OTTHUMG00000163629.1 overlapping_locus +57246 chr8 HAVANA gene 2033508 2035587 412.0 + 0 ENSG00000253805.1 lincRNA AC245164.1 2 OTTHUMG00000163630.2 +57247 chr8 ENSEMBL gene 2076589 2076640 52.0 + 0 ENSG00000273593.1 miRNA MIR7160 3 +57248 chr8 HAVANA gene 2045040 2165552 7062.0 + 0 ENSG00000036448.9 protein_coding MYOM2 2 OTTHUMG00000129175.7 ncRNA_host +57249 chr8 HAVANA gene 2495522 2499428 475.0 + 0 ENSG00000282686.1 lincRNA AC245519.2 2 OTTHUMG00000190744.1 +57250 chr8 HAVANA gene 2493876 2512580 512.0 - 0 ENSG00000253444.1 lincRNA AC245519.1 2 OTTHUMG00000163632.2 +57251 chr8 HAVANA gene 2518998 2522182 559.0 + 0 ENSG00000253855.1 lincRNA AC245187.1 2 OTTHUMG00000163633.1 +57252 chr8 HAVANA gene 2517898 2529710 475.0 - 0 ENSG00000282142.1 lincRNA AC245187.2 2 OTTHUMG00000190745.1 +57253 chr8 HAVANA gene 2589985 2623382 1722.0 - 0 ENSG00000277526.4 lincRNA AC245123.1 2 OTTHUMG00000163607.3 +57254 chr8 HAVANA gene 2666079 2728451 1674.0 - 0 ENSG00000254319.5 lincRNA AC246817.2 2 OTTHUMG00000163608.2 +57255 chr8 HAVANA gene 2727318 2822482 610.0 + 0 ENSG00000253853.1 lincRNA AC246817.1 2 OTTHUMG00000163609.1 +57256 chr8 HAVANA gene 3373353 3375226 463.0 - 0 ENSG00000253162.1 sense_intronic AC026991.1 1 OTTHUMG00000163650.1 overlapping_locus +57257 chr8 HAVANA gene 3409133 3426587 811.0 + 0 ENSG00000285861.1 antisense AC026991.2 2 OTTHUMG00000193241.1 +57258 chr8 ENSEMBL gene 3700492 3700628 137.0 + 0 ENSG00000222546.1 rRNA_pseudogene RNA5SP251 3 +57259 chr8 HAVANA gene 4633065 4635654 985.0 + 0 ENSG00000285977.1 antisense AC022068.1 2 OTTHUMG00000193203.1 +57260 chr8 HAVANA gene 4787332 4788584 1253.0 + 0 ENSG00000254244.1 processed_pseudogene PAICSP4 1 OTTHUMG00000163651.1 pseudo_consens +57261 chr8 HAVANA gene 2935353 4994972 18705.0 - 0 ENSG00000183117.18 protein_coding CSMD1 1 OTTHUMG00000163605.7 overlapping_locus +57262 chr8 HAVANA gene 5072645 5072869 225.0 - 0 ENSG00000253262.1 processed_pseudogene AC019176.1 1 OTTHUMG00000163696.1 pseudo_consens +57263 chr8 HAVANA gene 5127919 5128233 315.0 - 0 ENSG00000273876.1 unprocessed_pseudogene AC019176.2 2 OTTHUMG00000187693.1 +57264 chr8 ENSEMBL gene 5128279 5128412 134.0 - 0 ENSG00000206661.1 snoRNA RF00156 3 +57265 chr8 ENSEMBL gene 5142411 5142707 297.0 - 0 ENSG00000242079.1 misc_RNA RN7SL318P 3 +57266 chr8 HAVANA gene 5363371 5363650 280.0 + 0 ENSG00000278256.1 unprocessed_pseudogene AC007718.1 1 OTTHUMG00000187694.1 pseudo_consens +57267 chr8 HAVANA gene 5455218 5455665 448.0 - 0 ENSG00000271248.1 processed_pseudogene AC091193.1 1 OTTHUMG00000184705.1 pseudo_consens +57268 chr8 HAVANA gene 5476548 5476966 419.0 + 0 ENSG00000240486.2 processed_pseudogene RPL23AP54 1 OTTHUMG00000158103.3 pseudo_consens +57269 chr8 HAVANA gene 5506068 5509126 3059.0 - 0 ENSG00000253510.1 lincRNA AC004944.1 2 OTTHUMG00000163612.1 +57270 chr8 HAVANA gene 5659679 5670077 923.0 - 0 ENSG00000254007.1 lincRNA AC084768.1 1 OTTHUMG00000163613.1 +57271 chr8 HAVANA gene 5716584 5716804 221.0 + 0 ENSG00000275461.1 unprocessed_pseudogene AC084768.2 2 OTTHUMG00000187695.1 +57272 chr8 HAVANA gene 5848697 5849692 996.0 + 0 ENSG00000253571.1 processed_pseudogene AC087369.1 1 OTTHUMG00000163614.3 pseudo_consens +57273 chr8 ENSEMBL gene 5910945 5911236 292.0 - 0 ENSG00000222589.1 misc_RNA RN7SKP159 3 +57274 chr8 HAVANA gene 6036433 6036974 331.0 - 0 ENSG00000253189.1 lincRNA AC079054.1 2 OTTHUMG00000163615.1 +57275 chr8 HAVANA gene 6044353 6257537 574.0 - 0 ENSG00000253880.1 lincRNA AC009435.1 2 OTTHUMG00000163616.1 +57276 chr8 HAVANA gene 6403551 6407142 2934.0 - 0 ENSG00000246089.3 antisense AC016065.1 2 OTTHUMG00000163617.3 +57277 chr8 HAVANA gene 6473845 6474288 444.0 - 0 ENSG00000253550.1 processed_pseudogene AC016065.2 1 OTTHUMG00000163697.1 pseudo_consens +57278 chr8 HAVANA gene 6499651 6563409 6775.0 - 0 ENSG00000091879.13 protein_coding ANGPT2 2 OTTHUMG00000090365.3 +57279 chr8 HAVANA gene 6615604 6617198 1595.0 - 0 ENSG00000271743.1 lincRNA AF287957.1 2 OTTHUMG00000185396.1 +57280 chr8 ENSEMBL gene 6622124 6622220 97.0 - 0 ENSG00000276580.1 miRNA MIR8055 3 +57281 chr8 HAVANA gene 6406592 6648504 9775.0 + 0 ENSG00000147316.12 protein_coding MCPH1 2 OTTHUMG00000163618.5 +57282 chr8 HAVANA gene 6618475 6708209 3046.0 - 0 ENSG00000249898.7 antisense MCPH1-AS1 2 OTTHUMG00000163619.3 ncRNA_host +57283 chr8 ENSEMBL gene 6745168 6745240 73.0 - 0 ENSG00000283386.1 miRNA MIR4659B 3 +57284 chr8 ENSEMBL gene 6745164 6745244 81.0 + 0 ENSG00000266038.1 miRNA MIR4659A 3 +57285 chr8 HAVANA gene 6708357 6759666 4684.0 + 0 ENSG00000155189.11 protein_coding AGPAT5 1 OTTHUMG00000163656.4 ncRNA_host +57286 chr8 HAVANA gene 6808517 6835644 5031.0 - 0 ENSG00000275591.4 protein_coding XKR5 2 OTTHUMG00000153652.4 +57287 chr8 HAVANA gene 6870575 6878022 478.0 - 0 ENSG00000164825.3 protein_coding DEFB1 2 OTTHUMG00000090367.2 +57288 chr8 HAVANA gene 6835554 6885276 1433.0 + 0 ENSG00000245857.2 lincRNA GS1-24F4.2 2 OTTHUMG00000165210.1 +57289 chr8 HAVANA gene 6898878 6899468 591.0 - 0 ENSG00000250752.2 processed_pseudogene RPL23AP96 1 OTTHUMG00000160431.2 pseudo_consens +57290 chr8 HAVANA gene 6924693 6926076 469.0 - 0 ENSG00000164822.4 protein_coding DEFA6 2 OTTHUMG00000149984.1 +57291 chr8 HAVANA gene 6928608 6930473 401.0 + 0 ENSG00000254625.1 antisense AF233439.1 2 OTTHUMG00000165211.1 +57292 chr8 HAVANA gene 6935822 6938338 617.0 - 0 ENSG00000164821.4 protein_coding DEFA4 2 OTTHUMG00000090382.1 +57293 chr8 HAVANA gene 6950726 6951599 285.0 - 0 ENSG00000223629.1 unprocessed_pseudogene DEFA8P 2 OTTHUMG00000150024.1 +57294 chr8 HAVANA gene 6959289 6960161 285.0 - 0 ENSG00000233238.1 unprocessed_pseudogene DEFA9P 2 OTTHUMG00000150021.1 +57295 chr8 HAVANA gene 6968141 6969113 288.0 - 0 ENSG00000233531.1 unprocessed_pseudogene DEFA10P 2 OTTHUMG00000150022.1 +57296 chr8 HAVANA gene 6977649 6980080 486.0 - 0 ENSG00000206047.2 protein_coding DEFA1 2 OTTHUMG00000154594.1 +57297 chr8 HAVANA gene 6987178 6989721 496.0 - 0 ENSG00000215378.3 unprocessed_pseudogene DEFT1P 2 OTTHUMG00000149997.3 +57298 chr8 HAVANA gene 6996766 6999195 491.0 - 0 ENSG00000240247.7 protein_coding DEFA1B 2 OTTHUMG00000149850.3 +57299 chr8 HAVANA gene 7006293 7007389 421.0 - 0 ENSG00000232039.2 unprocessed_pseudogene DEFT1P2 2 OTTHUMG00000150570.1 +57300 chr8 HAVANA gene 7015869 7018301 498.0 - 0 ENSG00000239839.6 protein_coding DEFA3 2 OTTHUMG00000090381.2 +57301 chr8 HAVANA gene 7028641 7029489 261.0 - 0 ENSG00000234178.1 unprocessed_pseudogene DEFA11P 2 OTTHUMG00000150023.2 +57302 chr8 HAVANA gene 7038571 7039439 285.0 - 0 ENSG00000206042.1 unprocessed_pseudogene DEFA7P 2 OTTHUMG00000143737.1 +57303 chr8 HAVANA gene 7055304 7056734 449.0 - 0 ENSG00000164816.7 protein_coding DEFA5 2 OTTHUMG00000090383.2 +57304 chr8 HAVANA gene 7082971 7083328 358.0 + 0 ENSG00000255273.1 processed_pseudogene AF238378.1 1 OTTHUMG00000165380.1 pseudo_consens +57305 chr8 HAVANA gene 7112314 7113728 183.0 - 0 ENSG00000234120.1 processed_pseudogene AF228730.2 1 OTTHUMG00000150581.1 pseudo_consens +57306 chr8 HAVANA gene 7122857 7123704 848.0 + 0 ENSG00000228744.1 processed_pseudogene RPS3AP30 1 OTTHUMG00000150575.1 pseudo_consens +57307 chr8 HAVANA gene 7143632 7143841 210.0 - 0 ENSG00000254683.1 processed_pseudogene SNRPCP6 2 OTTHUMG00000165381.2 +57308 chr8 HAVANA gene 7170550 7170741 192.0 + 0 ENSG00000230106.1 processed_pseudogene SNRPCP15 2 OTTHUMG00000150580.2 +57309 chr8 HAVANA gene 7092102 7187316 2040.0 + 0 ENSG00000284620.2 transcribed_unprocessed_pseudogene AF228730.5 2 OTTHUMG00000192225.2 +57310 chr8 HAVANA gene 7190901 7191563 663.0 - 0 ENSG00000214268.2 processed_pseudogene RPS3AP33 1 OTTHUMG00000149981.2 pseudo_consens +57311 chr8 HAVANA gene 7200756 7200857 102.0 + 0 ENSG00000231930.1 processed_pseudogene AF228730.1 1 OTTHUMG00000150577.1 pseudo_consens +57312 chr8 HAVANA gene 7221713 7221930 218.0 - 0 ENSG00000284614.1 unprocessed_pseudogene AF228730.4 2 OTTHUMG00000192242.1 +57313 chr8 HAVANA gene 7227853 7228073 221.0 - 0 ENSG00000284728.1 unprocessed_pseudogene AF228730.6 2 OTTHUMG00000192243.1 +57314 chr8 HAVANA gene 7238286 7238631 346.0 - 0 ENSG00000255025.1 processed_pseudogene AF228730.3 1 OTTHUMG00000165382.2 pseudo_consens +57315 chr8 HAVANA gene 7246726 7247571 846.0 - 0 ENSG00000177306.4 unprocessed_pseudogene OR7E125P 1 OTTHUMG00000150380.1 pseudo_consens +57316 chr8 HAVANA gene 7256904 7259914 1395.0 + 0 ENSG00000230045.4 unprocessed_pseudogene FAM90A15P 2 OTTHUMG00000160360.1 +57317 chr8 HAVANA gene 7264526 7267536 1395.0 + 0 ENSG00000233132.4 unprocessed_pseudogene FAM90A3P 2 OTTHUMG00000160359.2 +57318 chr8 HAVANA gene 7272148 7275158 1395.0 + 0 ENSG00000249005.3 unprocessed_pseudogene FAM90A4P 2 OTTHUMG00000160358.2 +57319 chr8 HAVANA gene 7279770 7282780 1395.0 + 0 ENSG00000223885.4 unprocessed_pseudogene FAM90A13P 2 OTTHUMG00000165212.1 +57320 chr8 HAVANA gene 7287392 7290402 1395.0 + 0 ENSG00000215373.4 unprocessed_pseudogene FAM90A5P 2 OTTHUMG00000165213.1 +57321 chr8 HAVANA gene 7295014 7298024 1395.0 + 0 ENSG00000233295.3 unprocessed_pseudogene FAM90A20P 2 OTTHUMG00000165214.1 +57322 chr8 HAVANA gene 7312846 7319951 264.0 + 0 ENSG00000206034.1 unprocessed_pseudogene DEFB109B 2 OTTHUMG00000149982.2 +57323 chr8 HAVANA gene 7332387 7333979 1593.0 + 0 ENSG00000230549.3 protein_coding USP17L1 2 OTTHUMG00000150578.3 +57324 chr8 HAVANA gene 7337115 7338707 1593.0 + 0 ENSG00000236125.3 protein_coding USP17L4 2 OTTHUMG00000150574.3 +57325 chr8 HAVANA gene 7341826 7342942 1117.0 + 0 ENSG00000235778.1 unprocessed_pseudogene AC130360.1 1 OTTHUMG00000150576.1 pseudo_consens +57326 chr8 HAVANA gene 7301611 7355354 3339.0 - 0 ENSG00000215374.5 lincRNA FAM66B 2 OTTHUMG00000165383.2 +57327 chr8 HAVANA gene 7373114 7377500 252.0 + 0 ENSG00000215371.3 unprocessed_pseudogene DEFB108C 2 OTTHUMG00000143856.2 +57328 chr8 HAVANA gene 7355517 7385558 3644.0 - 0 ENSG00000215372.6 protein_coding ZNF705G 2 OTTHUMG00000165384.1 +57329 chr8 HAVANA gene 7414860 7416863 332.0 - 0 ENSG00000177257.2 protein_coding DEFB4B 2 OTTHUMG00000143857.3 +57330 chr8 HAVANA gene 7418991 7420546 1556.0 + 0 ENSG00000255128.1 processed_pseudogene HSPD1P3 1 OTTHUMG00000165385.1 pseudo_consens +57331 chr8 HAVANA gene 7428888 7430348 518.0 - 0 ENSG00000177243.3 protein_coding DEFB103B 2 OTTHUMG00000129313.2 +57332 chr8 HAVANA gene 7442684 7463674 1973.0 - 0 ENSG00000164871.17 protein_coding SPAG11B 2 OTTHUMG00000129219.4 +57333 chr8 HAVANA gene 7470308 7475082 281.0 - 0 ENSG00000177023.2 protein_coding DEFB104B 2 OTTHUMG00000149986.1 +57334 chr8 HAVANA gene 7482504 7486400 316.0 - 0 ENSG00000187082.2 protein_coding DEFB106B 2 OTTHUMG00000129312.1 +57335 chr8 HAVANA gene 7487669 7489593 331.0 + 0 ENSG00000186599.7 protein_coding DEFB105B 2 OTTHUMG00000129315.2 +57336 chr8 HAVANA gene 7495846 7509311 389.0 + 0 ENSG00000198129.2 protein_coding DEFB107B 2 OTTHUMG00000149987.1 +57337 chr8 HAVANA gene 7525143 7527297 838.0 + 0 ENSG00000285659.1 unprocessed_pseudogene AC134684.7 2 OTTHUMG00000193398.1 +57338 chr8 HAVANA gene 7539628 7542450 1587.0 + 0 ENSG00000255251.1 protein_coding PRR23D1 2 OTTHUMG00000165386.1 +57339 chr8 HAVANA gene 7544676 7545300 625.0 + 0 ENSG00000285927.1 unprocessed_pseudogene AC134684.10 2 OTTHUMG00000193399.1 +57340 chr8 HAVANA gene 7549053 7552062 1394.0 - 0 ENSG00000248944.1 unprocessed_pseudogene FAM90A6P 2 OTTHUMG00000150266.1 +57341 chr8 HAVANA gene 7556700 7559712 1395.0 - 0 ENSG00000285975.1 protein_coding AC134684.11 2 OTTHUMG00000150263.3 +57342 chr8 HAVANA gene 7564350 7567360 1396.0 - 0 ENSG00000234749.5 unprocessed_pseudogene FAM90A21P 2 OTTHUMG00000150264.1 +57343 chr8 HAVANA gene 7571995 7575006 1395.0 - 0 ENSG00000285687.1 protein_coding AC134684.8 2 OTTHUMG00000150262.3 +57344 chr8 HAVANA gene 7579644 7582653 1395.0 - 0 ENSG00000285765.1 protein_coding AC134684.9 2 OTTHUMG00000150265.4 +57345 chr8 HAVANA gene 7592006 7592916 911.0 + 0 ENSG00000233176.3 unprocessed_pseudogene OR7E157P 1 OTTHUMG00000150579.1 pseudo_consens +57346 chr8 HAVANA gene 7601004 7601267 264.0 + 0 ENSG00000254796.1 processed_pseudogene AC134684.1 1 OTTHUMG00000165387.2 pseudo_consens +57347 chr8 HAVANA gene 7611473 7611690 218.0 + 0 ENSG00000284617.1 unprocessed_pseudogene AC134684.6 2 OTTHUMG00000192235.1 +57348 chr8 HAVANA gene 7680309 7680526 218.0 - 0 ENSG00000284655.1 unprocessed_pseudogene AC084121.3 2 OTTHUMG00000192236.1 +57349 chr8 HAVANA gene 7686423 7686643 221.0 - 0 ENSG00000284698.1 unprocessed_pseudogene AC084121.4 2 OTTHUMG00000192237.1 +57350 chr8 HAVANA gene 7696830 7697093 264.0 - 0 ENSG00000254889.1 processed_pseudogene AC084121.2 1 OTTHUMG00000165388.2 pseudo_consens +57351 chr8 HAVANA gene 7705182 7706113 932.0 - 0 ENSG00000254715.3 unprocessed_pseudogene OR7E154P 1 OTTHUMG00000165389.1 pseudo_consens +57352 chr8 HAVANA gene 7715443 7718453 1395.0 + 0 ENSG00000285814.1 protein_coding AC084121.9 2 OTTHUMG00000165390.2 +57353 chr8 HAVANA gene 7723091 7726101 1395.0 + 0 ENSG00000285913.1 protein_coding AC084121.11 2 OTTHUMG00000165391.2 +57354 chr8 HAVANA gene 7730739 7733749 1395.0 + 0 ENSG00000285620.1 protein_coding AC084121.6 2 OTTHUMG00000165392.2 +57355 chr8 HAVANA gene 7738387 7741396 1395.0 + 0 ENSG00000285937.1 protein_coding AC084121.12 2 OTTHUMG00000165393.2 +57356 chr8 HAVANA gene 7746034 7749044 1395.0 + 0 ENSG00000285720.1 protein_coding AC084121.8 2 OTTHUMG00000165394.2 +57357 chr8 HAVANA gene 7753682 7756692 1395.0 + 0 ENSG00000285657.1 protein_coding AC084121.7 2 OTTHUMG00000165395.2 +57358 chr8 HAVANA gene 7761330 7764340 1395.0 + 0 ENSG00000285607.1 protein_coding AC084121.5 2 OTTHUMG00000165396.2 +57359 chr8 HAVANA gene 7768977 7771988 1395.0 + 0 ENSG00000285950.1 protein_coding AC084121.13 2 OTTHUMG00000165397.2 +57360 chr8 HAVANA gene 7775741 7776365 625.0 - 0 ENSG00000285862.1 unprocessed_pseudogene AC084121.10 2 OTTHUMG00000193400.1 +57361 chr8 HAVANA gene 7778591 7781413 1587.0 - 0 ENSG00000255378.1 protein_coding PRR23D2 2 OTTHUMG00000165398.1 +57362 chr8 HAVANA gene 7793716 7795870 835.0 - 0 ENSG00000254776.1 unprocessed_pseudogene AC084121.1 2 OTTHUMG00000165399.1 +57363 chr8 HAVANA gene 7811720 7815716 389.0 - 0 ENSG00000186572.2 protein_coding DEFB107A 2 OTTHUMG00000150013.1 +57364 chr8 HAVANA gene 7821966 7823889 330.0 - 0 ENSG00000186562.7 protein_coding DEFB105A 2 OTTHUMG00000150011.2 +57365 chr8 HAVANA gene 7825172 7829053 303.0 + 0 ENSG00000186579.2 protein_coding DEFB106A 2 OTTHUMG00000150012.1 +57366 chr8 HAVANA gene 7836471 7841242 281.0 + 0 ENSG00000176782.2 protein_coding DEFB104A 2 OTTHUMG00000150014.1 +57367 chr8 HAVANA gene 7847876 7868867 1973.0 + 0 ENSG00000178287.18 protein_coding SPAG11A 1 OTTHUMG00000162440.3 +57368 chr8 HAVANA gene 7881204 7882664 518.0 + 0 ENSG00000176797.3 protein_coding DEFB103A 2 OTTHUMG00000143855.2 +57369 chr8 HAVANA gene 7891003 7892555 1553.0 - 0 ENSG00000254543.1 processed_pseudogene HSPD1P2 1 OTTHUMG00000165400.1 pseudo_consens +57370 chr8 HAVANA gene 7894629 7896711 380.0 + 0 ENSG00000171711.2 protein_coding DEFB4A 2 OTTHUMG00000129314.1 +57371 chr8 HAVANA gene 7934412 7938770 222.0 - 0 ENSG00000229907.3 unprocessed_pseudogene DEFB108A 2 OTTHUMG00000165402.1 +57372 chr8 HAVANA gene 7926337 7952413 1207.0 + 0 ENSG00000215356.4 protein_coding ZNF705B 2 OTTHUMG00000165401.1 +57373 chr8 HAVANA gene 7967344 7968544 1201.0 - 0 ENSG00000255211.1 unprocessed_pseudogene AC130365.1 1 OTTHUMG00000165404.1 pseudo_consens +57374 chr8 HAVANA gene 7971661 7973253 1593.0 - 0 ENSG00000237038.5 protein_coding USP17L8 2 OTTHUMG00000165405.3 +57375 chr8 HAVANA gene 7976393 7977985 1593.0 - 0 ENSG00000225327.3 protein_coding USP17L3 2 OTTHUMG00000165406.3 +57376 chr8 HAVANA gene 7990415 7997521 264.0 - 0 ENSG00000205989.1 unprocessed_pseudogene DEFB109C 2 OTTHUMG00000150018.2 +57377 chr8 HAVANA gene 7955014 8008755 2841.0 + 0 ENSG00000225725.4 lincRNA FAM66E 2 OTTHUMG00000165403.3 +57378 chr8 HAVANA gene 8011782 8017011 2218.0 - 0 ENSG00000233115.4 unprocessed_pseudogene FAM90A11P 2 OTTHUMG00000163639.1 +57379 chr8 HAVANA gene 8019429 8024652 2379.0 - 0 ENSG00000215354.9 transcribed_unprocessed_pseudogene FAM90A24P 2 OTTHUMG00000163642.1 +57380 chr8 HAVANA gene 8027077 8032305 2375.0 - 0 ENSG00000254229.2 unprocessed_pseudogene FAM90A12P 2 OTTHUMG00000163643.1 +57381 chr8 HAVANA gene 8039978 8040953 976.0 + 0 ENSG00000227013.3 unprocessed_pseudogene OR7E96P 1 OTTHUMG00000165410.1 pseudo_consens +57382 chr8 HAVANA gene 8048919 8049267 349.0 + 0 ENSG00000253881.1 processed_pseudogene AC105233.2 1 OTTHUMG00000164248.2 pseudo_consens +57383 chr8 HAVANA gene 8059459 8059674 216.0 + 0 ENSG00000284603.1 transcribed_unprocessed_pseudogene AC105233.4 2 OTTHUMG00000192229.1 +57384 chr8 HAVANA gene 8065599 8065816 218.0 + 0 ENSG00000284661.1 transcribed_unprocessed_pseudogene AC105233.6 2 OTTHUMG00000192231.1 +57385 chr8 HAVANA gene 8086022 8086765 744.0 - 0 ENSG00000255459.1 processed_pseudogene AC105233.3 1 OTTHUMG00000165411.1 pseudo_consens +57386 chr8 ENSEMBL gene 8088941 8089089 149.0 - 0 ENSG00000221305.1 miRNA MIR548I3 3 +57387 chr8 HAVANA gene 8095946 8096726 781.0 + 0 ENSG00000244427.1 processed_pseudogene AC105233.1 1 OTTHUMG00000158109.1 pseudo_consens +57388 chr8 HAVANA gene 8116745 8116949 205.0 - 0 ENSG00000254311.1 processed_pseudogene SNRPCP17 2 OTTHUMG00000163645.1 +57389 chr8 HAVANA gene 8188535 8189195 661.0 - 0 ENSG00000268955.2 lincRNA AC068020.1 2 OTTHUMG00000187186.1 overlapping_locus +57390 chr8 HAVANA gene 8059572 8199973 7317.0 + 0 ENSG00000284606.1 processed_transcript AC105233.5 2 OTTHUMG00000192230.1 overlapping_locus +57391 chr8 HAVANA gene 8154308 8216916 999.0 + 0 ENSG00000249188.1 transcribed_unprocessed_pseudogene ENPP7P1 2 OTTHUMG00000160501.1 overlapping_locus +57392 chr8 HAVANA gene 8167819 8226614 792.0 - 0 ENSG00000253893.2 antisense FAM85B 2 OTTHUMG00000163729.2 overlapping_locus +57393 chr8 HAVANA gene 8236003 8244667 1447.0 - 0 ENSG00000253981.5 transcribed_unprocessed_pseudogene ALG1L13P 2 OTTHUMG00000163708.2 +57394 chr8 HAVANA gene 8228595 8244865 4870.0 + 0 ENSG00000173295.7 transcribed_unprocessed_pseudogene FAM86B3P 2 OTTHUMG00000163669.6 +57395 chr8 HAVANA gene 8317736 8386498 4904.0 - 0 ENSG00000275342.4 protein_coding PRAG1 2 OTTHUMG00000163709.3 +57396 chr8 HAVANA gene 8414205 8424640 1667.0 - 0 ENSG00000253505.2 lincRNA AC103957.1 2 OTTHUMG00000163730.3 +57397 chr8 HAVANA gene 8456909 8461337 510.0 - 0 ENSG00000254153.1 lincRNA AC103957.2 2 OTTHUMG00000163731.1 +57398 chr8 HAVANA gene 8555738 8560965 397.0 - 0 ENSG00000253343.1 lincRNA AC114550.2 2 OTTHUMG00000163671.1 +57399 chr8 HAVANA gene 8559894 8562124 579.0 + 0 ENSG00000253774.1 lincRNA AC114550.3 1 OTTHUMG00000163672.1 overlapping_locus +57400 chr8 HAVANA gene 8561391 8569688 1075.0 + 0 ENSG00000253130.1 lincRNA AC114550.1 1 OTTHUMG00000163673.2 overlapping_locus +57401 chr8 ENSEMBL gene 8582352 8582655 304.0 - 0 ENSG00000263616.2 misc_RNA RN7SL178P 3 +57402 chr8 HAVANA gene 8701938 8704106 2169.0 + 0 ENSG00000253958.1 protein_coding CLDN23 2 OTTHUMG00000163674.1 +57403 chr8 HAVANA gene 8714055 8719536 975.0 - 0 ENSG00000284717.1 unitary_pseudogene AC087269.2 2 OTTHUMG00000192251.1 +57404 chr8 HAVANA gene 8723693 8782479 925.0 - 0 ENSG00000254367.5 lincRNA AC087269.1 2 OTTHUMG00000163675.1 +57405 chr8 HAVANA gene 8783354 8893645 6883.0 - 0 ENSG00000147324.10 protein_coding MFHAS1 2 OTTHUMG00000163676.2 +57406 chr8 ENSEMBL gene 8895813 8895918 106.0 + 0 ENSG00000200713.1 snRNA RNU6-682P 3 +57407 chr8 HAVANA gene 8933721 8934006 286.0 - 0 ENSG00000270966.1 processed_pseudogene AC087763.1 1 OTTHUMG00000184741.1 pseudo_consens +57408 chr8 ENSEMBL gene 8961575 8961708 134.0 + 0 ENSG00000207244.1 snoRNA RF00156 3 +57409 chr8 HAVANA gene 8961200 8979025 1442.0 + 0 ENSG00000233609.3 transcribed_processed_pseudogene RPL10P19 2 OTTHUMG00000163695.1 +57410 chr8 ENSEMBL gene 9048445 9048518 74.0 + 0 ENSG00000263407.1 miRNA MIR4660 3 +57411 chr8 ENSEMBL gene 9072455 9072516 62.0 - 0 ENSG00000239078.1 snRNA RNU7-55P 3 +57412 chr8 ENSEMBL gene 9091240 9091508 269.0 + 0 ENSG00000197334.2 misc_RNA RF00017 3 +57413 chr8 HAVANA gene 9002147 9116746 6385.0 + 0 ENSG00000104626.14 protein_coding ERI1 2 OTTHUMG00000129328.5 ncRNA_host +57414 chr8 HAVANA gene 9141424 9145435 651.0 + 0 ENSG00000254340.1 antisense AC022784.5 1 OTTHUMG00000163659.2 +57415 chr8 HAVANA gene 9136255 9151574 5776.0 - 0 ENSG00000173281.4 protein_coding PPP1R3B 2 OTTHUMG00000129329.2 +57416 chr8 HAVANA gene 9158063 9158621 559.0 + 0 ENSG00000279949.1 lincRNA AC022784.6 2 OTTHUMG00000189230.1 overlapping_locus +57417 chr8 HAVANA gene 9180251 9182519 328.0 - 0 ENSG00000253252.2 lincRNA AC022784.2 2 OTTHUMG00000163664.2 +57418 chr8 HAVANA gene 9233013 9233449 437.0 + 0 ENSG00000254091.2 processed_pseudogene AC022784.4 1 OTTHUMG00000163732.2 pseudo_consens +57419 chr8 HAVANA gene 9255349 9260295 422.0 - 0 ENSG00000253887.1 lincRNA AC022784.3 1 OTTHUMG00000163666.1 +57420 chr8 ENSEMBL gene 9287472 9287578 107.0 - 0 ENSG00000207415.1 snRNA RNU6-1151P 3 +57421 chr8 HAVANA gene 9351238 9358441 563.0 - 0 ENSG00000253735.1 lincRNA AC021736.1 1 OTTHUMG00000163667.1 +57422 chr8 ENSEMBL gene 9371090 9371195 106.0 - 0 ENSG00000201815.1 snRNA RNU6-526P 3 +57423 chr8 HAVANA gene 9151695 9425524 17427.0 + 0 ENSG00000248538.7 lincRNA AC022784.1 2 OTTHUMG00000163665.9 +57424 chr8 HAVANA gene 9371970 9436205 1525.0 - 0 ENSG00000254237.5 lincRNA AC021242.2 1 OTTHUMG00000163668.1 +57425 chr8 HAVANA gene 9453698 9457418 2035.0 + 0 ENSG00000249050.1 processed_pseudogene AC021242.1 1 OTTHUMG00000160394.1 pseudo_consens +57426 chr8 HAVANA gene 9555144 9556520 1377.0 - 0 ENSG00000272267.2 antisense AC021242.3 2 OTTHUMG00000185402.2 +57427 chr8 HAVANA gene 9658295 9658438 144.0 - 0 ENSG00000253697.1 unprocessed_pseudogene AC103834.1 2 OTTHUMG00000163733.1 +57428 chr8 ENSEMBL gene 9741672 9741768 97.0 + 0 ENSG00000207701.1 miRNA MIR597 3 +57429 chr8 HAVANA gene 9555914 9782346 14186.0 + 0 ENSG00000173273.15 protein_coding TNKS 1 OTTHUMG00000090481.3 ncRNA_host +57430 chr8 ENSEMBL gene 9903388 9903472 85.0 - 0 ENSG00000284321.1 miRNA MIR124-1 3 +57431 chr8 HAVANA gene 9900064 9905366 4136.0 - 0 ENSG00000253230.8 lincRNA LINC00599 2 OTTHUMG00000163734.2 ncRNA_host +57432 chr8 HAVANA gene 10050485 10054254 3770.0 - 0 ENSG00000260093.1 antisense AC034111.1 2 OTTHUMG00000163777.1 +57433 chr8 HAVANA gene 10118005 10147423 2041.0 - 0 ENSG00000285675.1 antisense AC023385.1 2 OTTHUMG00000192723.1 +57434 chr8 HAVANA gene 10275499 10279737 1576.0 - 0 ENSG00000285606.1 antisense AC079200.1 2 OTTHUMG00000193157.1 +57435 chr8 HAVANA gene 10336782 10337677 575.0 - 0 ENSG00000249848.1 processed_pseudogene AC112673.1 1 OTTHUMG00000160435.1 pseudo_consens +57436 chr8 HAVANA gene 10054268 10428891 4162.0 + 0 ENSG00000175806.14 protein_coding MSRA 1 OTTHUMG00000090517.7 +57437 chr8 HAVANA gene 10433672 10438312 4641.0 + 0 ENSG00000261451.1 sense_overlapping AC104964.2 2 OTTHUMG00000163781.2 +57438 chr8 HAVANA gene 10474789 10475045 257.0 - 0 ENSG00000285237.1 unprocessed_pseudogene AC104964.4 2 OTTHUMG00000192423.1 +57439 chr8 ENSEMBL gene 10476223 10476329 107.0 + 0 ENSG00000207128.1 snRNA RNU6-729P 3 +57440 chr8 HAVANA gene 10476597 10479420 1496.0 - 0 ENSG00000253678.2 lincRNA AC104964.1 2 OTTHUMG00000163804.2 +57441 chr8 HAVANA gene 10474565 10481974 1271.0 + 0 ENSG00000253641.5 lincRNA LINCR-0001 2 OTTHUMG00000163782.1 ncRNA_host +57442 chr8 HAVANA gene 10486807 10489666 2860.0 + 0 ENSG00000272505.1 lincRNA AC104964.3 2 OTTHUMG00000185404.1 +57443 chr8 HAVANA gene 10482878 10547585 3036.0 - 0 ENSG00000253649.5 protein_coding PRSS51 2 OTTHUMG00000163805.5 +57444 chr8 HAVANA gene 10525546 10554166 3135.0 + 0 ENSG00000184647.10 protein_coding PRSS55 1 OTTHUMG00000129345.4 +57445 chr8 ENSEMBL gene 10666978 10667070 93.0 + 0 ENSG00000263762.1 miRNA MIR4286 3 +57446 chr8 ENSEMBL gene 10686569 10686687 119.0 + 0 ENSG00000212433.1 rRNA_pseudogene RNA5SP252 3 +57447 chr8 HAVANA gene 10672637 10700593 5346.0 + 0 ENSG00000171060.10 protein_coding C8orf74 1 OTTHUMG00000163807.2 +57448 chr8 HAVANA gene 10606349 10712187 8881.0 - 0 ENSG00000183638.5 protein_coding RP1L1 2 OTTHUMG00000163806.1 +57449 chr8 HAVANA gene 10723768 10730512 3216.0 - 0 ENSG00000171056.7 protein_coding SOX7 2 OTTHUMG00000090585.1 overlapping_locus +57450 chr8 HAVANA gene 10729314 10771392 1019.0 + 0 ENSG00000248896.2 antisense AC105001.1 2 OTTHUMG00000163821.1 +57451 chr8 ENSEMBL gene 10825373 10825443 71.0 - 0 ENSG00000283210.1 miRNA MIR1322 3 +57452 chr8 HAVANA gene 10725399 10839847 1753.0 - 0 ENSG00000258724.1 protein_coding PINX1 2 OTTHUMG00000171787.1 ncRNA_host,overlapping_locus +57453 chr8 HAVANA gene 10764963 10839884 2802.0 - 0 ENSG00000254093.8 protein_coding PINX1 2 OTTHUMG00000163808.4 ncRNA_host,overlapping_locus +57454 chr8 HAVANA gene 10840576 10846501 439.0 + 0 ENSG00000253695.1 antisense AC011008.1 2 OTTHUMG00000163822.1 +57455 chr8 HAVANA gene 10856085 10859436 3352.0 - 0 ENSG00000280294.1 TEC AC011008.2 2 OTTHUMG00000163823.1 +57456 chr8 ENSEMBL gene 11035206 11035302 97.0 - 0 ENSG00000207600.3 miRNA MIR598 3 +57457 chr8 HAVANA gene 11062647 11067089 639.0 - 0 ENSG00000254839.1 lincRNA AF131215.3 1 OTTHUMG00000165422.1 overlapping_locus +57458 chr8 HAVANA gene 11104691 11106704 2014.0 - 0 ENSG00000269918.1 sense_intronic AF131215.6 2 OTTHUMG00000184046.1 overlapping_locus +57459 chr8 HAVANA gene 11107788 11109726 1939.0 - 0 ENSG00000255310.2 sense_intronic AF131215.5 2 OTTHUMG00000165424.3 overlapping_locus +57460 chr8 HAVANA gene 11123381 11126064 1741.0 - 0 ENSG00000254936.4 sense_intronic AF131215.4 2 OTTHUMG00000165425.2 overlapping_locus +57461 chr8 HAVANA gene 11136898 11138607 1710.0 - 0 ENSG00000254556.1 sense_intronic AF131215.2 2 OTTHUMG00000165426.1 overlapping_locus +57462 chr8 HAVANA gene 11175051 11175570 520.0 + 0 ENSG00000231965.4 processed_pseudogene AF131215.1 1 OTTHUMG00000158111.2 pseudo_consens +57463 chr8 HAVANA gene 10896045 11201366 5209.0 - 0 ENSG00000171044.10 protein_coding XKR6 1 OTTHUMG00000129351.5 ncRNA_host,overlapping_locus +57464 chr8 HAVANA gene 11202965 11203671 707.0 + 0 ENSG00000270076.1 lincRNA AF131215.7 2 OTTHUMG00000183970.1 +57465 chr8 HAVANA gene 11256020 11256602 583.0 + 0 ENSG00000239315.4 processed_pseudogene RPL19P13 1 OTTHUMG00000158120.2 pseudo_consens +57466 chr8 HAVANA gene 11247626 11267865 241.0 - 0 ENSG00000236827.1 lincRNA LINC00529 1 OTTHUMG00000165427.2 +57467 chr8 HAVANA gene 11281364 11282501 564.0 - 0 ENSG00000249316.2 unprocessed_pseudogene AF131216.2 2 OTTHUMG00000160436.2 +57468 chr8 HAVANA gene 11283481 11285068 1588.0 - 0 ENSG00000280273.2 antisense AF131216.4 2 OTTHUMG00000192013.1 +57469 chr8 HAVANA gene 11315859 11325429 5856.0 - 0 ENSG00000246477.3 antisense AF131216.1 2 OTTHUMG00000165413.2 +57470 chr8 HAVANA gene 11284416 11328146 8804.0 + 0 ENSG00000104643.9 protein_coding MTMR9 1 OTTHUMG00000090647.3 +57471 chr8 HAVANA gene 11330888 11332208 1321.0 + 0 ENSG00000177710.5 protein_coding SLC35G5 2 OTTHUMG00000090653.2 retrogene +57472 chr8 HAVANA gene 11345748 11347502 1099.0 - 0 ENSG00000255020.1 antisense AF131216.3 1 OTTHUMG00000165414.1 +57473 chr8 HAVANA gene 11339637 11368452 2235.0 + 0 ENSG00000154316.16 transcribed_unitary_pseudogene TDH 2 OTTHUMG00000165365.6 overlapping_locus +57474 chr8 ENSEMBL gene 11379395 11379675 281.0 + 0 ENSG00000242483.3 misc_RNA RN7SL293P 3 +57475 chr8 ENSEMBL gene 11392411 11392517 107.0 - 0 ENSG00000199368.1 snRNA RNU6-1084P 3 +57476 chr8 HAVANA gene 11368402 11438658 1909.0 + 0 ENSG00000184608.8 antisense FAM167A-AS1 2 OTTHUMG00000165366.3 ncRNA_host,overlapping_locus +57477 chr8 HAVANA gene 11421463 11475908 5076.0 - 0 ENSG00000154319.15 protein_coding FAM167A 1 OTTHUMG00000129361.5 +57478 chr8 HAVANA gene 11479203 11481068 710.0 - 0 ENSG00000284957.1 lincRNA AF131216.5 2 OTTHUMG00000192612.1 +57479 chr8 HAVANA gene 11486894 11564604 5077.0 + 0 ENSG00000136573.13 protein_coding BLK 1 OTTHUMG00000090729.3 +57480 chr8 HAVANA gene 11552488 11564694 2594.0 - 0 ENSG00000269954.2 antisense AC022239.1 2 OTTHUMG00000165416.2 +57481 chr8 HAVANA gene 11576313 11581342 2150.0 + 0 ENSG00000170983.3 lincRNA LINC00208 2 OTTHUMG00000161738.2 +57482 chr8 HAVANA gene 11676959 11760002 4443.0 + 0 ENSG00000136574.17 protein_coding GATA4 1 OTTHUMG00000090800.4 +57483 chr8 HAVANA gene 11761256 11763223 1968.0 + 0 ENSG00000255394.4 lincRNA C8orf49 2 OTTHUMG00000165224.3 +57484 chr8 HAVANA gene 11769639 11787346 3367.0 + 0 ENSG00000154328.15 protein_coding NEIL2 2 OTTHUMG00000090753.5 +57485 chr8 HAVANA gene 11790005 11790386 382.0 + 0 ENSG00000227203.3 processed_pseudogene SUB1P1 1 OTTHUMG00000165367.1 pseudo_consens +57486 chr8 HAVANA gene 11797928 11802568 1091.0 - 0 ENSG00000255046.1 lincRNA AC069185.1 1 OTTHUMG00000165417.1 +57487 chr8 HAVANA gene 11795573 11839309 5202.0 + 0 ENSG00000079459.12 protein_coding FDFT1 1 OTTHUMG00000090801.6 +57488 chr8 HAVANA gene 11846154 11846391 238.0 - 0 ENSG00000269899.1 sense_intronic AC025857.2 2 OTTHUMG00000183972.1 overlapping_locus +57489 chr8 HAVANA gene 11842524 11869448 7428.0 - 0 ENSG00000164733.20 protein_coding CTSB 1 OTTHUMG00000090799.9 overlapping_locus +57490 chr8 HAVANA gene 11895850 11896870 377.0 - 0 ENSG00000255144.1 unprocessed_pseudogene AC025857.1 1 OTTHUMG00000165307.2 pseudo_consens +57491 chr8 HAVANA gene 11919900 11920809 910.0 - 0 ENSG00000254948.1 unprocessed_pseudogene OR7E158P 1 OTTHUMG00000165308.1 pseudo_consens +57492 chr8 HAVANA gene 11928597 11933203 1047.0 - 0 ENSG00000206014.7 transcribed_unprocessed_pseudogene OR7E161P 1 OTTHUMG00000165472.2 pseudo_consens +57493 chr8 HAVANA gene 11973937 11974599 237.0 - 0 ENSG00000205884.2 protein_coding DEFB136 2 OTTHUMG00000158720.2 +57494 chr8 HAVANA gene 11982321 11984590 234.0 + 0 ENSG00000205883.2 protein_coding DEFB135 2 OTTHUMG00000158719.2 +57495 chr8 HAVANA gene 11993174 11996312 1068.0 - 0 ENSG00000205882.8 protein_coding DEFB134 2 OTTHUMG00000158718.4 +57496 chr8 HAVANA gene 11999087 11999468 382.0 + 0 ENSG00000255174.1 processed_pseudogene AC107918.3 1 OTTHUMG00000165311.1 pseudo_consens +57497 chr8 HAVANA gene 12003400 12004082 683.0 - 0 ENSG00000254507.2 transcribed_processed_pseudogene DEFB131E 2 OTTHUMG00000165312.3 +57498 chr8 HAVANA gene 12006188 12015193 3141.0 - 0 ENSG00000284610.1 transcribed_unprocessed_pseudogene AC107918.4 1 OTTHUMG00000192239.2 pseudo_consens +57499 chr8 HAVANA gene 12025244 12025598 355.0 - 0 ENSG00000255016.1 processed_pseudogene AC107918.2 1 OTTHUMG00000165314.1 pseudo_consens +57500 chr8 HAVANA gene 12033646 12034612 967.0 - 0 ENSG00000254817.1 unprocessed_pseudogene AC107918.1 1 OTTHUMG00000165315.1 pseudo_consens +57501 chr8 HAVANA gene 12043506 12043670 165.0 - 0 ENSG00000254700.1 processed_pseudogene DEFB131C 2 OTTHUMG00000165473.3 +57502 chr8 HAVANA gene 12064389 12071747 240.0 - 0 ENSG00000233050.1 protein_coding DEFB130B 2 OTTHUMG00000158721.2 +57503 chr8 ENSEMBL gene 12087396 12087445 50.0 - 0 ENSG00000252029.1 rRNA_pseudogene RNA5SP253 3 +57504 chr8 HAVANA gene 12095176 12099536 222.0 - 0 ENSG00000255544.2 unprocessed_pseudogene DEFB108D 2 OTTHUMG00000165316.2 +57505 chr8 HAVANA gene 12104389 12115516 3377.0 + 0 ENSG00000215343.7 protein_coding ZNF705D 2 OTTHUMG00000165474.1 +57506 chr8 HAVANA gene 12128107 12129298 1192.0 - 0 ENSG00000254923.1 processed_pseudogene AC130366.1 1 OTTHUMG00000165293.1 pseudo_consens +57507 chr8 HAVANA gene 12132417 12134438 2022.0 - 0 ENSG00000226430.6 protein_coding USP17L7 2 OTTHUMG00000165294.6 retrogene +57508 chr8 HAVANA gene 12137168 12139077 1910.0 - 0 ENSG00000223443.2 protein_coding USP17L2 2 OTTHUMG00000165295.4 retrogene +57509 chr8 HAVANA gene 12150895 12151134 240.0 - 0 ENSG00000254866.2 processed_pseudogene DEFB109D 2 OTTHUMG00000165296.3 +57510 chr8 HAVANA gene 12172761 12175771 1395.0 - 0 ENSG00000205879.5 unprocessed_pseudogene FAM90A2P 2 OTTHUMG00000165297.2 +57511 chr8 HAVANA gene 12115782 12177550 918.0 + 0 ENSG00000255052.4 antisense FAM66D 2 OTTHUMG00000165269.4 +57512 chr8 HAVANA gene 12178697 12182719 450.0 + 0 ENSG00000249889.1 unprocessed_pseudogene ALG1L11P 2 OTTHUMG00000160503.3 +57513 chr8 HAVANA gene 12182096 12194133 4232.0 - 0 ENSG00000186523.14 protein_coding FAM86B1 2 OTTHUMG00000165298.5 +57514 chr8 HAVANA gene 12194467 12196280 1361.0 + 0 ENSG00000255495.1 antisense AC145124.1 2 OTTHUMG00000165272.3 +57515 chr8 HAVANA gene 12205759 12206389 631.0 - 0 ENSG00000254527.1 processed_pseudogene ENPP7P12 2 OTTHUMG00000165299.1 +57516 chr8 HAVANA gene 12290071 12296180 184.0 - 0 ENSG00000237215.3 unprocessed_pseudogene DEFB131D 2 OTTHUMG00000165455.2 +57517 chr8 HAVANA gene 12310962 12318316 240.0 - 0 ENSG00000232948.1 protein_coding DEFB130A 2 OTTHUMG00000158742.2 +57518 chr8 ENSEMBL gene 12333644 12333693 50.0 - 0 ENSG00000252535.1 rRNA_pseudogene RNA5SP254 3 +57519 chr8 HAVANA gene 12341426 12345776 240.0 - 0 ENSG00000254623.1 unprocessed_pseudogene DEFB108E 2 OTTHUMG00000165456.1 +57520 chr8 HAVANA gene 12356136 12359391 889.0 + 0 ENSG00000215339.3 unprocessed_pseudogene ZNF705CP 2 OTTHUMG00000165457.1 +57521 chr8 HAVANA gene 12374366 12375546 1181.0 - 0 ENSG00000254423.1 processed_pseudogene AC087203.1 1 OTTHUMG00000165459.2 pseudo_consens +57522 chr8 HAVANA gene 12378679 12380265 1587.0 - 0 ENSG00000255556.2 processed_pseudogene AC087203.2 1 OTTHUMG00000165460.2 pseudo_consens +57523 chr8 HAVANA gene 12362019 12388296 1222.0 + 0 ENSG00000227888.4 lincRNA FAM66A 2 OTTHUMG00000165458.2 +57524 chr8 HAVANA gene 12393209 12400366 265.0 - 0 ENSG00000242296.2 unprocessed_pseudogene DEFB109A 2 OTTHUMG00000158671.3 +57525 chr8 HAVANA gene 12412827 12414373 1547.0 + 0 ENSG00000270074.1 lincRNA AC087203.3 2 OTTHUMG00000183973.1 +57526 chr8 HAVANA gene 12415080 12418090 1395.0 - 0 ENSG00000251402.3 unprocessed_pseudogene FAM90A25P 2 OTTHUMG00000165461.2 +57527 chr8 HAVANA gene 12421032 12425000 434.0 + 0 ENSG00000250794.2 unprocessed_pseudogene ALG1L12P 2 OTTHUMG00000160507.2 +57528 chr8 HAVANA gene 12425614 12436343 1366.0 - 0 ENSG00000145002.12 protein_coding FAM86B2 2 OTTHUMG00000165462.2 +57529 chr8 HAVANA gene 12476462 12477122 661.0 + 0 ENSG00000270154.1 lincRNA AC130352.1 2 OTTHUMG00000183974.1 +57530 chr8 HAVANA gene 12448013 12511278 929.0 - 0 ENSG00000255549.2 transcribed_unprocessed_pseudogene ENPP7P6 2 OTTHUMG00000165463.2 overlapping_locus +57531 chr8 HAVANA gene 12570350 12571130 781.0 - 0 ENSG00000242607.1 processed_pseudogene RPS3AP34 1 OTTHUMG00000158124.1 pseudo_consens +57532 chr8 HAVANA gene 12580287 12581063 186.0 + 0 ENSG00000255122.1 processed_pseudogene AC068587.2 1 OTTHUMG00000165464.1 pseudo_consens +57533 chr8 HAVANA gene 12601158 12601376 219.0 - 0 ENSG00000284746.1 transcribed_unprocessed_pseudogene AC068587.8 2 OTTHUMG00000192219.1 overlapping_locus +57534 chr8 HAVANA gene 12607291 12607509 219.0 - 0 ENSG00000284663.1 transcribed_unprocessed_pseudogene AC068587.6 2 OTTHUMG00000192220.1 overlapping_locus +57535 chr8 HAVANA gene 12628476 12629256 781.0 - 0 ENSG00000244289.1 processed_pseudogene RPS3AP35 1 OTTHUMG00000158126.1 pseudo_consens +57536 chr8 HAVANA gene 12638428 12638602 175.0 + 0 ENSG00000255253.1 processed_pseudogene AC068587.3 1 OTTHUMG00000165465.1 pseudo_consens +57537 chr8 HAVANA gene 12659130 12659348 219.0 - 0 ENSG00000284724.1 transcribed_unprocessed_pseudogene AC068587.7 2 OTTHUMG00000192221.1 overlapping_locus +57538 chr8 HAVANA gene 12665278 12665495 218.0 - 0 ENSG00000284613.1 transcribed_unprocessed_pseudogene AC068587.5 2 OTTHUMG00000192222.1 overlapping_locus +57539 chr8 HAVANA gene 12467693 12665588 13920.0 - 0 ENSG00000283674.2 processed_transcript AC068587.4 2 OTTHUMG00000191723.2 overlapping_locus +57540 chr8 HAVANA gene 12676035 12676389 355.0 - 0 ENSG00000254581.1 processed_pseudogene AC068587.1 1 OTTHUMG00000165466.1 pseudo_consens +57541 chr8 HAVANA gene 12684154 12685153 1000.0 - 0 ENSG00000177400.6 unprocessed_pseudogene OR7E8P 1 OTTHUMG00000165467.1 pseudo_consens +57542 chr8 HAVANA gene 12696307 12697273 967.0 - 0 ENSG00000254917.1 unprocessed_pseudogene OR7E15P 2 OTTHUMG00000165468.1 +57543 chr8 HAVANA gene 12703066 12704056 991.0 - 0 ENSG00000254724.1 unprocessed_pseudogene OR7E10P 1 OTTHUMG00000165469.1 pseudo_consens +57544 chr8 ENSEMBL gene 12719132 12719190 59.0 + 0 ENSG00000264512.2 miRNA MIR5692A2 3 +57545 chr8 ENSEMBL gene 12727237 12727299 63.0 + 0 ENSG00000283523.1 miRNA MIR3926-2 3 +57546 chr8 ENSEMBL gene 12727232 12727304 73.0 - 0 ENSG00000266206.1 miRNA MIR3926-1 3 +57547 chr8 HAVANA gene 12721894 12756073 5685.0 - 0 ENSG00000154359.12 protein_coding LONRF1 2 OTTHUMG00000165475.2 ncRNA_host +57548 chr8 HAVANA gene 12765849 12811478 1259.0 - 0 ENSG00000254813.5 lincRNA AC123777.1 2 OTTHUMG00000165476.1 +57549 chr8 HAVANA gene 12794243 12818291 504.0 + 0 ENSG00000255494.1 lincRNA LINC00681 2 OTTHUMG00000129516.3 +57550 chr8 HAVANA gene 12958387 12962200 1418.0 + 0 ENSG00000251468.2 unprocessed_pseudogene AC135352.1 2 OTTHUMG00000160399.2 overlapping_locus +57551 chr8 HAVANA gene 12945642 13031503 14668.0 + 0 ENSG00000250305.8 protein_coding TRMT9B 1 OTTHUMG00000165477.4 overlapping_locus +57552 chr8 ENSEMBL gene 13044350 13044456 107.0 + 0 ENSG00000206996.1 snRNA RNU6-842P 3 +57553 chr8 ENSEMBL gene 13160178 13160279 102.0 + 0 ENSG00000200630.1 misc_RNA RF00019 3 +57554 chr8 HAVANA gene 13338574 13342754 3488.0 + 0 ENSG00000253932.1 antisense AC019270.1 2 OTTHUMG00000163950.1 +57555 chr8 HAVANA gene 13353401 13353530 130.0 - 0 ENSG00000253257.1 processed_pseudogene MTND4P7 2 OTTHUMG00000163951.1 overlapping_locus +57556 chr8 ENSEMBL gene 13536029 13536135 107.0 + 0 ENSG00000252179.1 rRNA_pseudogene RNA5SP255 3 +57557 chr8 HAVANA gene 13566843 13568287 1445.0 + 0 ENSG00000164743.4 protein_coding C8orf48 2 OTTHUMG00000165482.1 +57558 chr8 HAVANA gene 13583889 13584533 645.0 - 0 ENSG00000254491.1 processed_pseudogene AC022832.1 2 OTTHUMG00000165483.1 overlapping_locus +57559 chr8 HAVANA gene 13083361 13604610 12794.0 - 0 ENSG00000164741.14 protein_coding DLC1 1 OTTHUMG00000090825.11 overlapping_locus +57560 chr8 HAVANA gene 13695574 13705506 270.0 + 0 ENSG00000255457.1 processed_pseudogene AC022880.2 2 OTTHUMG00000165486.2 +57561 chr8 HAVANA gene 13741809 13742781 973.0 + 0 ENSG00000255413.1 processed_pseudogene AC022880.1 2 OTTHUMG00000165487.1 +57562 chr8 HAVANA gene 13844101 13849109 589.0 - 0 ENSG00000254753.1 lincRNA AC022690.2 1 OTTHUMG00000165488.1 +57563 chr8 HAVANA gene 13909231 13909780 550.0 - 0 ENSG00000254425.1 processed_pseudogene AC022690.1 1 OTTHUMG00000165489.1 pseudo_consens +57564 chr8 HAVANA gene 14022687 14023422 736.0 - 0 ENSG00000255437.1 processed_pseudogene AC023538.1 1 OTTHUMG00000165490.1 pseudo_consens +57565 chr8 HAVANA gene 14161297 14165359 488.0 + 0 ENSG00000254575.1 antisense AC022039.1 2 OTTHUMG00000165500.1 +57566 chr8 HAVANA gene 14309033 14309672 640.0 + 0 ENSG00000214366.4 processed_pseudogene EIF4EP5 1 OTTHUMG00000165492.1 pseudo_consens +57567 chr8 ENSEMBL gene 14319455 14319516 62.0 + 0 ENSG00000252264.1 snRNA RNU7-153P 3 +57568 chr8 ENSEMBL gene 14332555 14332663 109.0 + 0 ENSG00000206950.1 misc_RNA RF00019 3 +57569 chr8 ENSEMBL gene 14487776 14487879 104.0 - 0 ENSG00000252035.1 snRNA RNU6-397P 3 +57570 chr8 HAVANA gene 14690382 14690619 238.0 + 0 ENSG00000255365.1 processed_pseudogene AC040926.1 1 OTTHUMG00000165501.1 pseudo_consens +57571 chr8 ENSEMBL gene 14853438 14853510 73.0 - 0 ENSG00000199127.1 miRNA MIR383 3 +57572 chr8 HAVANA gene 14879057 14879819 312.0 - 0 ENSG00000255076.2 sense_intronic AC084838.1 2 OTTHUMG00000165502.2 overlapping_locus +57573 chr8 HAVANA gene 14089864 15238339 2234.0 - 0 ENSG00000185053.13 protein_coding SGCZ 2 OTTHUMG00000090827.3 ncRNA_host,overlapping_locus +57574 chr8 HAVANA gene 15325296 15325569 274.0 + 0 ENSG00000249368.1 processed_pseudogene AC103851.1 1 OTTHUMG00000161547.1 pseudo_consens +57575 chr8 HAVANA gene 15688914 15689562 649.0 - 0 ENSG00000248423.1 processed_pseudogene AC100850.1 1 OTTHUMG00000161572.1 pseudo_consens +57576 chr8 HAVANA gene 15417215 15766649 5190.0 + 0 ENSG00000104723.20 protein_coding TUSC3 2 OTTHUMG00000094803.3 +57577 chr8 HAVANA gene 15806149 15807283 1135.0 - 0 ENSG00000250483.1 processed_pseudogene PPM1AP1 1 OTTHUMG00000161571.1 pseudo_consens +57578 chr8 HAVANA gene 15943127 15943532 406.0 + 0 ENSG00000226836.5 processed_pseudogene AC018437.1 1 OTTHUMG00000158128.1 pseudo_consens +57579 chr8 HAVANA gene 15973315 16000324 389.0 + 0 ENSG00000253648.1 lincRNA AC018437.2 2 OTTHUMG00000163854.1 +57580 chr8 HAVANA gene 16275681 16276296 616.0 + 0 ENSG00000253951.1 processed_pseudogene AC087360.1 1 OTTHUMG00000163855.1 pseudo_consens +57581 chr8 HAVANA gene 16374618 16375082 465.0 + 0 ENSG00000253934.2 processed_pseudogene MRPL49P2 1 OTTHUMG00000163856.2 pseudo_consens +57582 chr8 HAVANA gene 16107878 16567490 7812.0 - 0 ENSG00000038945.14 protein_coding MSR1 1 OTTHUMG00000094809.5 +57583 chr8 HAVANA gene 16604255 16664879 458.0 + 0 ENSG00000253184.1 lincRNA AC011586.1 2 OTTHUMG00000163857.1 +57584 chr8 ENSEMBL gene 16863196 16863496 301.0 - 0 ENSG00000264092.2 misc_RNA RN7SL474P 3 +57585 chr8 HAVANA gene 16598758 16915044 1892.0 - 0 ENSG00000253496.3 lincRNA AC011586.2 2 OTTHUMG00000163858.4 ncRNA_host +57586 chr8 HAVANA gene 16992169 17002181 1688.0 - 0 ENSG00000078579.8 protein_coding FGF20 2 OTTHUMG00000096964.2 +57587 chr8 HAVANA gene 17027238 17122644 4606.0 + 0 ENSG00000155970.11 protein_coding MICU3 2 OTTHUMG00000096965.3 +57588 chr8 HAVANA gene 17131181 17149789 2292.0 + 0 ENSG00000249258.2 lincRNA AC079193.2 2 OTTHUMG00000163859.1 +57589 chr8 HAVANA gene 17150301 17150888 588.0 - 0 ENSG00000244113.1 processed_pseudogene AC079193.1 1 OTTHUMG00000158129.1 pseudo_consens +57590 chr8 HAVANA gene 17156029 17224799 6735.0 + 0 ENSG00000104219.12 protein_coding ZDHHC2 2 OTTHUMG00000163860.4 +57591 chr8 HAVANA gene 17224964 17246878 10943.0 - 0 ENSG00000198791.11 protein_coding CNOT7 1 OTTHUMG00000096971.4 +57592 chr8 HAVANA gene 17246571 17302427 6784.0 + 0 ENSG00000155975.9 protein_coding VPS37A 1 OTTHUMG00000130785.5 +57593 chr8 HAVANA gene 17298030 17413528 5692.0 - 0 ENSG00000003987.13 protein_coding MTMR7 2 OTTHUMG00000163771.3 +57594 chr8 HAVANA gene 17469518 17471618 2101.0 + 0 ENSG00000214607.2 unprocessed_pseudogene ADAM24P 1 OTTHUMG00000154893.2 pseudo_consens +57595 chr8 HAVANA gene 17498737 17499157 421.0 + 0 ENSG00000280453.1 TEC AP006248.5 2 OTTHUMG00000189203.1 +57596 chr8 HAVANA gene 17498647 17499238 592.0 - 0 ENSG00000279271.1 TEC AP006248.2 2 OTTHUMG00000189198.1 +57597 chr8 HAVANA gene 17500012 17500605 594.0 + 0 ENSG00000279903.1 TEC AP006248.3 2 OTTHUMG00000189204.1 +57598 chr8 HAVANA gene 17510613 17511300 688.0 + 0 ENSG00000279932.1 sense_intronic AP006248.4 2 OTTHUMG00000189199.1 +57599 chr8 HAVANA gene 17497088 17570573 7905.0 + 0 ENSG00000003989.17 protein_coding SLC7A2 2 OTTHUMG00000130819.5 +57600 chr8 HAVANA gene 17596312 17596378 67.0 - 0 ENSG00000277466.1 unprocessed_pseudogene AP006248.1 2 OTTHUMG00000187697.1 +57601 chr8 HAVANA gene 17576433 17644071 2409.0 + 0 ENSG00000104213.12 protein_coding PDGFRL 1 OTTHUMG00000130818.4 +57602 chr8 ENSEMBL gene 17681578 17681657 80.0 - 0 ENSG00000265520.1 miRNA MIR548V 3 +57603 chr8 HAVANA gene 17703988 17706187 735.0 + 0 ENSG00000253168.1 antisense AC124069.1 2 OTTHUMG00000163704.1 +57604 chr8 ENSEMBL gene 17748118 17748230 113.0 + 0 ENSG00000212280.1 rRNA_pseudogene RNA5SP256 3 +57605 chr8 HAVANA gene 17643795 17800917 12010.0 - 0 ENSG00000129422.14 protein_coding MTUS1 1 OTTHUMG00000163756.5 ncRNA_host +57606 chr8 HAVANA gene 17808941 17820868 1053.0 + 0 ENSG00000253671.2 processed_transcript AC027117.1 2 OTTHUMG00000163706.2 overlapping_locus +57607 chr8 HAVANA gene 17801345 17861069 510.0 + 0 ENSG00000253944.1 antisense AC027117.2 2 OTTHUMG00000163705.1 overlapping_locus +57608 chr8 HAVANA gene 17882043 17882661 529.0 + 0 ENSG00000253215.1 antisense AC087273.1 2 OTTHUMG00000163791.1 +57609 chr8 HAVANA gene 17905756 17907887 634.0 + 0 ENSG00000254054.2 lincRNA AC087273.2 2 OTTHUMG00000163792.1 +57610 chr8 HAVANA gene 17864380 17910365 3301.0 - 0 ENSG00000104760.16 protein_coding FGL1 1 OTTHUMG00000096989.4 +57611 chr8 HAVANA gene 17922840 18029944 14445.0 + 0 ENSG00000078674.17 protein_coding PCM1 1 OTTHUMG00000163699.7 +57612 chr8 HAVANA gene 18055992 18084998 15378.0 - 0 ENSG00000104763.18 protein_coding ASAH1 2 OTTHUMG00000096997.19 +57613 chr8 HAVANA gene 18088569 18089687 1119.0 - 0 ENSG00000253384.1 processed_pseudogene AC124242.2 1 OTTHUMG00000163818.1 pseudo_consens +57614 chr8 HAVANA gene 18084689 18096394 2013.0 + 0 ENSG00000245281.7 antisense AC124242.1 2 OTTHUMG00000163728.2 +57615 chr8 HAVANA gene 18200924 18201205 282.0 - 0 ENSG00000254015.1 processed_pseudogene MTND4LP26 2 OTTHUMG00000163793.1 +57616 chr8 HAVANA gene 18170477 18223689 3168.0 + 0 ENSG00000171428.13 protein_coding NAT1 2 OTTHUMG00000097001.5 +57617 chr8 HAVANA gene 18370607 18371484 878.0 + 0 ENSG00000253937.1 unprocessed_pseudogene NATP 2 OTTHUMG00000163710.1 +57618 chr8 HAVANA gene 18383274 18383917 644.0 - 0 ENSG00000244593.1 processed_pseudogene AC025062.1 1 OTTHUMG00000158573.1 pseudo_consens +57619 chr8 HAVANA gene 18387108 18387777 670.0 - 0 ENSG00000271654.1 processed_pseudogene AC025062.2 1 OTTHUMG00000184844.1 pseudo_consens +57620 chr8 HAVANA gene 18387268 18388319 344.0 + 0 ENSG00000285624.1 lincRNA AC025062.3 2 OTTHUMG00000193328.1 +57621 chr8 HAVANA gene 18391245 18401218 1322.0 + 0 ENSG00000156006.4 protein_coding NAT2 2 OTTHUMG00000130826.2 +57622 chr8 HAVANA gene 18720905 18734405 2054.0 + 0 ENSG00000187229.3 antisense AC100800.1 2 OTTHUMG00000163712.1 +57623 chr8 HAVANA gene 18774547 18774918 372.0 - 0 ENSG00000244018.1 processed_pseudogene RPL35P6 1 OTTHUMG00000158575.1 pseudo_consens,overlapping_locus +57624 chr8 HAVANA gene 18849258 18849707 450.0 + 0 ENSG00000283402.1 unprocessed_pseudogene AC087821.2 2 OTTHUMG00000191794.1 +57625 chr8 HAVANA gene 18864681 18865247 567.0 - 0 ENSG00000278886.1 TEC AC087821.1 2 OTTHUMG00000163713.1 overlapping_locus +57626 chr8 ENSEMBL gene 18979619 18979772 154.0 + 0 ENSG00000201157.1 snoRNA RF00091 3 +57627 chr8 HAVANA gene 18989279 19000952 545.0 + 0 ENSG00000253335.1 antisense AC009884.1 2 OTTHUMG00000163714.1 +57628 chr8 HAVANA gene 19001627 19001950 324.0 + 0 ENSG00000270255.1 processed_pseudogene AC009884.2 1 OTTHUMG00000184797.1 pseudo_consens +57629 chr8 HAVANA gene 18527301 19084730 15213.0 - 0 ENSG00000156011.16 protein_coding PSD3 2 OTTHUMG00000163711.2 overlapping_locus +57630 chr8 HAVANA gene 19091733 19115024 519.0 + 0 ENSG00000254242.1 lincRNA AC100849.2 2 OTTHUMG00000163716.1 +57631 chr8 HAVANA gene 19237737 19241912 2297.0 + 0 ENSG00000250316.1 unprocessed_pseudogene AC068880.1 1 OTTHUMG00000160400.2 pseudo_consens +57632 chr8 HAVANA gene 19246350 19249240 179.0 + 0 ENSG00000254201.1 lincRNA AC068880.3 2 OTTHUMG00000163717.1 +57633 chr8 HAVANA gene 19254241 19257334 362.0 - 0 ENSG00000253280.1 lincRNA AC068880.2 2 OTTHUMG00000163718.1 overlapping_locus +57634 chr8 HAVANA gene 19084992 19259469 1460.0 - 0 ENSG00000253557.5 lincRNA AC100849.1 2 OTTHUMG00000163715.1 overlapping_locus +57635 chr8 HAVANA gene 19277284 19277573 290.0 + 0 ENSG00000279919.1 TEC AC068880.5 2 OTTHUMG00000163719.1 +57636 chr8 HAVANA gene 19375128 19375622 495.0 - 0 ENSG00000279858.1 TEC AC068880.4 2 OTTHUMG00000163720.1 +57637 chr8 HAVANA gene 19313617 19396218 4148.0 + 0 ENSG00000104611.11 protein_coding SH2D4A 1 OTTHUMG00000097005.3 +57638 chr8 HAVANA gene 19678572 19688934 467.0 + 0 ENSG00000253270.1 lincRNA AC090541.1 1 OTTHUMG00000163754.1 +57639 chr8 HAVANA gene 19404161 19758029 6580.0 - 0 ENSG00000147408.14 protein_coding CSGALNACT1 1 OTTHUMG00000130827.5 +57640 chr8 HAVANA gene 19817140 19852083 6869.0 + 0 ENSG00000104613.11 protein_coding INTS10 1 OTTHUMG00000131065.4 +57641 chr8 HAVANA gene 19901717 19967259 4383.0 + 0 ENSG00000175445.15 protein_coding LPL 2 OTTHUMG00000036645.8 +57642 chr8 HAVANA gene 20113343 20113672 330.0 - 0 ENSG00000242709.1 processed_pseudogene RPL30P9 1 OTTHUMG00000158581.1 pseudo_consens +57643 chr8 HAVANA gene 20079114 20124857 1963.0 + 0 ENSG00000253775.2 lincRNA AC100802.1 2 OTTHUMG00000163744.3 +57644 chr8 HAVANA gene 20144855 20183206 3910.0 - 0 ENSG00000036565.14 protein_coding SLC18A1 2 OTTHUMG00000097017.4 +57645 chr8 HAVANA gene 20197367 20226819 7816.0 + 0 ENSG00000147416.10 protein_coding ATP6V1B2 2 OTTHUMG00000131073.2 +57646 chr8 ENSEMBL gene 20229779 20229877 99.0 + 0 ENSG00000222267.1 snRNA RNU6-892P 3 +57647 chr8 ENSEMBL gene 20290174 20290289 116.0 + 0 ENSG00000274467.1 rRNA_pseudogene RNA5SP257 3 +57648 chr8 HAVANA gene 20275773 20290458 892.0 + 0 ENSG00000253733.3 lincRNA LZTS1-AS1 1 OTTHUMG00000163745.1 +57649 chr8 HAVANA gene 20246165 20303963 5706.0 - 0 ENSG00000061337.15 protein_coding LZTS1 2 OTTHUMG00000097027.4 +57650 chr8 HAVANA gene 20350210 20372769 983.0 + 0 ENSG00000253164.5 lincRNA AC023403.1 2 OTTHUMG00000163746.1 +57651 chr8 HAVANA gene 20551201 20551405 205.0 + 0 ENSG00000253178.1 unprocessed_pseudogene AC022559.1 2 OTTHUMG00000163747.1 +57652 chr8 HAVANA gene 20655691 20700134 1153.0 - 0 ENSG00000253300.1 lincRNA AC018541.1 2 OTTHUMG00000163748.1 +57653 chr8 HAVANA gene 20934435 20934837 403.0 - 0 ENSG00000253866.1 processed_pseudogene TMEM97P2 1 OTTHUMG00000163890.1 pseudo_consens +57654 chr8 HAVANA gene 20941428 20950175 568.0 + 0 ENSG00000254260.1 lincRNA AC015468.4 2 OTTHUMG00000163757.1 +57655 chr8 HAVANA gene 20954012 20968904 550.0 + 0 ENSG00000254026.1 lincRNA AC015468.2 2 OTTHUMG00000163760.1 overlapping_locus +57656 chr8 HAVANA gene 20953127 20968904 1050.0 + 0 ENSG00000253147.5 lincRNA AC015468.1 2 OTTHUMG00000163759.1 overlapping_locus +57657 chr8 HAVANA gene 20952645 20973877 417.0 - 0 ENSG00000254092.1 lincRNA AC015468.3 1 OTTHUMG00000163758.1 +57658 chr8 HAVANA gene 20973797 20995119 2059.0 + 0 ENSG00000253199.1 lincRNA LINC02153 2 OTTHUMG00000163761.1 +57659 chr8 HAVANA gene 21023296 21029058 581.0 + 0 ENSG00000254040.1 lincRNA AC103719.1 2 OTTHUMG00000163891.1 +57660 chr8 HAVANA gene 21129990 21130100 111.0 - 0 ENSG00000280215.1 TEC AC021613.1 2 OTTHUMG00000163892.1 +57661 chr8 HAVANA gene 21298206 21309449 1882.0 + 0 ENSG00000254334.1 lincRNA AC021355.1 2 OTTHUMG00000163893.2 +57662 chr8 HAVANA gene 21797460 21797759 300.0 + 0 ENSG00000273484.1 unprocessed_pseudogene OR6R2P 2 OTTHUMG00000185882.1 +57663 chr8 HAVANA gene 21690403 21812357 5716.0 - 0 ENSG00000168546.10 protein_coding GFRA2 1 OTTHUMG00000163897.6 +57664 chr8 HAVANA gene 21908873 21913860 2211.0 - 0 ENSG00000147443.12 protein_coding DOK2 1 OTTHUMG00000131075.4 +57665 chr8 HAVANA gene 21919671 22006585 6909.0 + 0 ENSG00000130227.16 protein_coding XPO7 2 OTTHUMG00000163789.5 +57666 chr8 HAVANA gene 22024125 22036897 2063.0 + 0 ENSG00000158806.13 protein_coding NPM2 2 OTTHUMG00000131129.4 +57667 chr8 HAVANA gene 22042398 22048809 3287.0 + 0 ENSG00000158815.10 protein_coding FGF17 1 OTTHUMG00000097051.2 +57668 chr8 HAVANA gene 22048995 22082527 4473.0 + 0 ENSG00000158856.18 protein_coding DMTN 1 OTTHUMG00000097087.7 +57669 chr8 HAVANA gene 22089159 22104898 8278.0 + 0 ENSG00000158863.21 protein_coding FAM160B2 2 OTTHUMG00000097088.8 +57670 chr8 HAVANA gene 22106872 22109419 1756.0 - 0 ENSG00000275074.1 protein_coding NUDT18 2 OTTHUMG00000163774.5 +57671 chr8 HAVANA gene 22114415 22133384 8784.0 - 0 ENSG00000168453.14 protein_coding HR 2 OTTHUMG00000097089.4 +57672 chr8 HAVANA gene 22138020 22141951 2266.0 - 0 ENSG00000168476.11 protein_coding REEP4 1 OTTHUMG00000131491.5 +57673 chr8 HAVANA gene 22146825 22157084 4514.0 - 0 ENSG00000168481.8 protein_coding LGI3 2 OTTHUMG00000131599.4 +57674 chr8 HAVANA gene 22156913 22164479 3188.0 + 0 ENSG00000168484.12 protein_coding SFTPC 1 OTTHUMG00000163775.2 +57675 chr8 HAVANA gene 22169338 22171710 2373.0 + 0 ENSG00000177725.5 sense_overlapping AC105206.1 2 OTTHUMG00000186797.1 overlapping_locus +57676 chr8 HAVANA gene 22188369 22192578 1235.0 - 0 ENSG00000285881.1 antisense AC105206.3 2 OTTHUMG00000192967.1 +57677 chr8 HAVANA gene 22164736 22212326 7471.0 + 0 ENSG00000168487.18 protein_coding BMP1 2 OTTHUMG00000097761.8 overlapping_locus +57678 chr8 HAVANA gene 22219704 22232341 4170.0 - 0 ENSG00000168490.13 protein_coding PHYHIP 1 OTTHUMG00000163776.3 +57679 chr8 ENSEMBL gene 22244962 22245043 82.0 - 0 ENSG00000208037.1 miRNA MIR320A 3 +57680 chr8 HAVANA gene 22245104 22254600 5611.0 + 0 ENSG00000168495.12 protein_coding POLR3D 2 OTTHUMG00000163778.4 +57681 chr8 HAVANA gene 22254576 22275162 515.0 - 0 ENSG00000254064.1 antisense AC105206.2 1 OTTHUMG00000164269.1 +57682 chr8 HAVANA gene 22275297 22357563 5751.0 + 0 ENSG00000197181.11 protein_coding PIWIL2 1 OTTHUMG00000097767.2 +57683 chr8 HAVANA gene 22389865 22390655 483.0 - 0 ENSG00000241026.1 unprocessed_pseudogene AC105910.1 1 OTTHUMG00000158582.1 pseudo_consens +57684 chr8 HAVANA gene 22367249 22434129 6942.0 + 0 ENSG00000104635.13 protein_coding SLC39A14 1 OTTHUMG00000097791.6 +57685 chr8 ENSEMBL gene 22434391 22434497 107.0 + 0 ENSG00000201761.1 snRNA RNU6-336P 3 +57686 chr8 HAVANA gene 22492631 22493044 414.0 + 0 ENSG00000254272.1 processed_pseudogene AC087854.1 1 OTTHUMG00000163803.1 pseudo_consens,overlapping_locus +57687 chr8 HAVANA gene 22440819 22541142 2899.0 + 0 ENSG00000120910.14 protein_coding PPP3CC 1 OTTHUMG00000163802.4 overlapping_locus +57688 chr8 HAVANA gene 22540845 22545405 4076.0 - 0 ENSG00000251034.1 antisense AC037459.2 2 OTTHUMG00000163841.2 +57689 chr8 HAVANA gene 22565997 22567171 585.0 - 0 ENSG00000254230.1 antisense AC037459.4 2 OTTHUMG00000163842.1 +57690 chr8 HAVANA gene 22544986 22575788 6097.0 + 0 ENSG00000120896.13 protein_coding SORBS3 2 OTTHUMG00000131728.7 +57691 chr8 HAVANA gene 22578279 22598025 12388.0 + 0 ENSG00000120913.23 protein_coding PDLIM2 2 OTTHUMG00000164270.6 overlapping_locus +57692 chr8 HAVANA gene 22589274 22602084 1198.0 + 0 ENSG00000248235.6 protein_coding AC037459.1 1 OTTHUMG00000131729.12 overlapping_locus +57693 chr8 HAVANA gene 22599601 22604150 3317.0 + 0 ENSG00000241852.9 protein_coding C8orf58 1 OTTHUMG00000154160.6 overlapping_locus +57694 chr8 HAVANA gene 22613908 22616657 2750.0 - 0 ENSG00000253200.1 antisense AC037459.3 2 OTTHUMG00000163843.2 +57695 chr8 HAVANA gene 22604632 22621514 6534.0 + 0 ENSG00000158941.16 protein_coding CCAR2 2 OTTHUMG00000162249.3 +57696 chr8 HAVANA gene 22620418 22669148 5080.0 - 0 ENSG00000147439.12 protein_coding BIN3 2 OTTHUMG00000163844.1 +57697 chr8 HAVANA gene 22679013 22684009 4997.0 - 0 ENSG00000261026.1 sense_overlapping AC105046.1 2 OTTHUMG00000173366.1 +57698 chr8 HAVANA gene 22687659 22693302 4855.0 - 0 ENSG00000179388.8 protein_coding EGR3 1 OTTHUMG00000097825.2 +57699 chr8 HAVANA gene 22690150 22798616 2191.0 + 0 ENSG00000253125.1 processed_transcript AC055854.1 2 OTTHUMG00000163751.1 +57700 chr8 HAVANA gene 22877972 22888022 4023.0 + 0 ENSG00000248738.6 antisense AC037441.1 2 OTTHUMG00000163752.1 +57701 chr8 HAVANA gene 22895434 22897813 898.0 - 0 ENSG00000253142.1 sense_intronic AC037441.2 2 OTTHUMG00000163750.1 overlapping_locus +57702 chr8 ENSEMBL gene 22977877 22978127 251.0 + 0 ENSG00000240116.3 misc_RNA RN7SL303P 3 +57703 chr8 HAVANA gene 22713251 23000000 1329.0 - 0 ENSG00000134020.7 protein_coding PEBP4 2 OTTHUMG00000163749.5 overlapping_locus +57704 chr8 HAVANA gene 22984596 23019335 2268.0 - 0 ENSG00000245025.2 antisense AC107959.1 2 OTTHUMG00000163755.1 overlapping_locus +57705 chr8 HAVANA gene 22987417 23020199 6580.0 + 0 ENSG00000008853.16 protein_coding RHOBTB2 1 OTTHUMG00000097827.3 +57706 chr8 HAVANA gene 23020133 23069179 5158.0 - 0 ENSG00000120889.12 protein_coding TNFRSF10B 2 OTTHUMG00000097826.2 +57707 chr8 HAVANA gene 23071377 23074488 881.0 - 0 ENSG00000253616.5 antisense AC107959.3 2 OTTHUMG00000163772.1 +57708 chr8 HAVANA gene 23068229 23083619 2636.0 + 0 ENSG00000246130.1 antisense AC107959.2 2 OTTHUMG00000163763.1 +57709 chr8 HAVANA gene 23084355 23103558 1242.0 + 0 ENSG00000284948.1 lincRNA AC107959.4 2 OTTHUMG00000192449.1 overlapping_locus +57710 chr8 HAVANA gene 23084403 23115536 581.0 + 0 ENSG00000284956.1 protein_coding AC107959.5 2 OTTHUMG00000192450.1 overlapping_locus +57711 chr8 HAVANA gene 23102590 23117437 1868.0 + 0 ENSG00000173535.14 protein_coding TNFRSF10C 2 OTTHUMG00000097844.4 overlapping_locus +57712 chr8 HAVANA gene 23135588 23164030 3538.0 - 0 ENSG00000173530.5 protein_coding TNFRSF10D 2 OTTHUMG00000097845.1 +57713 chr8 HAVANA gene 23189279 23190675 637.0 + 0 ENSG00000253930.1 antisense TNFRSF10A-AS1 2 OTTHUMG00000163783.1 +57714 chr8 HAVANA gene 23206918 23207369 452.0 + 0 ENSG00000243265.1 processed_pseudogene RPL23AP55 1 OTTHUMG00000158583.2 pseudo_consens +57715 chr8 HAVANA gene 23190452 23225126 2951.0 - 0 ENSG00000104689.9 protein_coding TNFRSF10A 2 OTTHUMG00000097843.3 +57716 chr8 HAVANA gene 23225233 23230915 1125.0 - 0 ENSG00000250714.3 antisense AC100861.2 2 OTTHUMG00000163785.1 +57717 chr8 HAVANA gene 23224471 23230926 2445.0 + 0 ENSG00000246582.2 processed_transcript AC100861.1 2 OTTHUMG00000163784.1 +57718 chr8 HAVANA gene 23243637 23262000 4698.0 + 0 ENSG00000147457.13 protein_coding CHMP7 1 OTTHUMG00000131785.5 +57719 chr8 HAVANA gene 23270120 23296279 2630.0 + 0 ENSG00000104679.10 protein_coding R3HCC1 1 OTTHUMG00000163786.3 +57720 chr8 HAVANA gene 23336171 23366125 4798.0 + 0 ENSG00000253837.1 processed_transcript AC090197.1 2 OTTHUMG00000163787.1 +57721 chr8 HAVANA gene 23297189 23425328 5707.0 - 0 ENSG00000134013.15 protein_coding LOXL2 1 OTTHUMG00000163797.5 overlapping_locus +57722 chr8 HAVANA gene 23385783 23457695 7064.0 - 0 ENSG00000197217.12 protein_coding ENTPD4 1 OTTHUMG00000097852.4 overlapping_locus +57723 chr8 HAVANA gene 23483016 23483534 519.0 - 0 ENSG00000253483.1 processed_pseudogene AC104561.2 1 OTTHUMG00000163863.1 pseudo_consens +57724 chr8 HAVANA gene 23458601 23484971 630.0 + 0 ENSG00000253390.1 lincRNA AC104561.1 2 OTTHUMG00000163862.1 +57725 chr8 HAVANA gene 23493009 23494198 715.0 - 0 ENSG00000253986.1 lincRNA AC104561.3 1 OTTHUMG00000163864.1 +57726 chr8 HAVANA gene 23528805 23575463 8147.0 + 0 ENSG00000147454.13 protein_coding SLC25A37 1 OTTHUMG00000163865.1 +57727 chr8 ENSEMBL gene 23600026 23600138 113.0 - 0 ENSG00000252067.1 snRNA RNU4-71P 3 +57728 chr8 HAVANA gene 23634876 23635507 632.0 - 0 ENSG00000253488.1 processed_pseudogene SINHCAFP3 1 OTTHUMG00000163866.1 pseudo_consens +57729 chr8 HAVANA gene 23678693 23682927 3271.0 - 0 ENSG00000167034.9 protein_coding NKX3-1 2 OTTHUMG00000097851.3 +57730 chr8 HAVANA gene 23702451 23706598 906.0 - 0 ENSG00000180053.7 protein_coding NKX2-6 2 OTTHUMG00000163867.5 +57731 chr8 HAVANA gene 23726331 23743042 443.0 - 0 ENSG00000254002.1 lincRNA AC012574.2 1 OTTHUMG00000163869.1 +57732 chr8 HAVANA gene 23707141 23789487 252.0 + 0 ENSG00000253471.1 lincRNA AC012574.1 2 OTTHUMG00000163868.1 +57733 chr8 HAVANA gene 23805933 23806154 222.0 - 0 ENSG00000271118.1 processed_pseudogene AC012119.1 1 OTTHUMG00000184840.1 pseudo_consens +57734 chr8 ENSEMBL gene 23806229 23806377 149.0 - 0 ENSG00000207027.1 snoRNA RF00272 3 +57735 chr8 HAVANA gene 23841915 23854807 4149.0 - 0 ENSG00000159167.11 protein_coding STC1 1 OTTHUMG00000097853.2 +57736 chr8 ENSEMBL gene 24076997 24077158 162.0 - 0 ENSG00000207201.1 snRNA RNU1-148P 3 +57737 chr8 HAVANA gene 24169957 24177080 491.0 - 0 ENSG00000253891.1 lincRNA AC023202.1 1 OTTHUMG00000163779.1 +57738 chr8 HAVANA gene 24294040 24359018 9351.0 + 0 ENSG00000042980.12 protein_coding ADAM28 1 OTTHUMG00000163780.7 +57739 chr8 HAVANA gene 24384285 24406013 2438.0 + 0 ENSG00000134028.14 protein_coding ADAMDEC1 2 OTTHUMG00000097858.3 +57740 chr8 HAVANA gene 24490312 24514829 1240.0 - 0 ENSG00000253643.5 antisense AC024958.1 1 OTTHUMG00000163819.1 overlapping_locus +57741 chr8 HAVANA gene 24440930 24526970 4483.0 + 0 ENSG00000069206.15 protein_coding ADAM7 1 OTTHUMG00000097859.4 +57742 chr8 HAVANA gene 24295814 24912073 1341.0 - 0 ENSG00000253535.5 antisense AC120193.1 2 OTTHUMG00000163790.3 overlapping_locus +57743 chr8 HAVANA gene 24912165 24914717 2553.0 - 0 ENSG00000272163.1 antisense AF106564.1 2 OTTHUMG00000185424.2 +57744 chr8 HAVANA gene 24913012 24919098 4381.0 + 0 ENSG00000104722.13 protein_coding NEFM 1 OTTHUMG00000131990.7 +57745 chr8 ENSEMBL gene 24953796 24953867 72.0 - 0 ENSG00000283327.1 miRNA MIR6841 3 +57746 chr8 HAVANA gene 24956621 24957110 490.0 + 0 ENSG00000272157.1 antisense AC107373.2 2 OTTHUMG00000185425.1 +57747 chr8 HAVANA gene 24950955 24957110 4329.0 - 0 ENSG00000277586.2 protein_coding NEFL 2 OTTHUMG00000134284.9 ncRNA_host +57748 chr8 HAVANA gene 24992002 25009777 603.0 + 0 ENSG00000253832.1 lincRNA AC107373.1 2 OTTHUMG00000163846.1 +57749 chr8 HAVANA gene 25141394 25141968 575.0 - 0 ENSG00000253670.1 processed_pseudogene AC073581.1 1 OTTHUMG00000163827.1 pseudo_consens +57750 chr8 HAVANA gene 25276945 25277476 532.0 - 0 ENSG00000284858.1 processed_pseudogene AC091185.2 2 OTTHUMG00000192601.1 +57751 chr8 ENSEMBL gene 25345402 25345474 73.0 + 0 ENSG00000274988.1 miRNA MIR6876 3 +57752 chr8 HAVANA gene 25184723 25418082 15960.0 + 0 ENSG00000147459.17 protein_coding DOCK5 1 OTTHUMG00000131991.11 ncRNA_host +57753 chr8 HAVANA gene 25419260 25424654 1762.0 - 0 ENSG00000147437.9 protein_coding GNRH1 2 OTTHUMG00000163852.1 +57754 chr8 HAVANA gene 25425521 25426580 528.0 - 0 ENSG00000253476.1 lincRNA AC091185.1 2 OTTHUMG00000163853.1 +57755 chr8 HAVANA gene 25427847 25458476 4383.0 - 0 ENSG00000104756.15 protein_coding KCTD9 2 OTTHUMG00000099428.5 +57756 chr8 HAVANA gene 25458997 25507920 3908.0 + 0 ENSG00000184661.13 protein_coding CDCA2 1 OTTHUMG00000099429.6 +57757 chr8 HAVANA gene 25685798 25687524 1131.0 + 0 ENSG00000253100.1 lincRNA AC009623.1 1 OTTHUMG00000163835.1 +57758 chr8 HAVANA gene 25776679 25777456 465.0 + 0 ENSG00000253342.1 lincRNA AC009623.2 1 OTTHUMG00000163836.1 +57759 chr8 HAVANA gene 25820975 25833464 1382.0 - 0 ENSG00000285890.1 lincRNA AC009623.3 2 OTTHUMG00000193218.1 +57760 chr8 HAVANA gene 25834129 25840135 485.0 - 0 ENSG00000254178.1 lincRNA AC090103.1 1 OTTHUMG00000163837.1 +57761 chr8 HAVANA gene 25841730 26045397 7077.0 - 0 ENSG00000221818.8 protein_coding EBF2 2 OTTHUMG00000163838.2 +57762 chr8 ENSEMBL gene 26136880 26136998 119.0 + 0 ENSG00000199620.1 rRNA_pseudogene RNA5SP258 3 +57763 chr8 HAVANA gene 26254883 26256628 1399.0 - 0 ENSG00000249213.1 processed_pseudogene AC079097.1 1 OTTHUMG00000160437.1 pseudo_consens +57764 chr8 HAVANA gene 26291491 26372680 7865.0 + 0 ENSG00000221914.9 protein_coding PPP2R2A 2 OTTHUMG00000163850.13 +57765 chr8 HAVANA gene 26375913 26382953 3987.0 - 0 ENSG00000228451.4 transcribed_processed_pseudogene SDAD1P1 1 OTTHUMG00000163945.2 pseudo_consens +57766 chr8 HAVANA gene 26422593 26423929 508.0 + 0 ENSG00000253430.1 sense_intronic AC011726.2 2 OTTHUMG00000164014.1 overlapping_locus +57767 chr8 HAVANA gene 26433029 26434065 669.0 - 0 ENSG00000251203.1 processed_pseudogene AC011726.1 1 OTTHUMG00000160275.1 pseudo_consens +57768 chr8 HAVANA gene 26440491 26442595 568.0 + 0 ENSG00000254362.1 sense_intronic AC011726.3 2 OTTHUMG00000164015.1 overlapping_locus +57769 chr8 HAVANA gene 26382898 26505636 4307.0 + 0 ENSG00000104765.15 protein_coding BNIP3L 1 OTTHUMG00000099433.3 overlapping_locus +57770 chr8 HAVANA gene 26504686 26514092 5579.0 - 0 ENSG00000240694.8 protein_coding PNMA2 2 OTTHUMG00000163816.4 +57771 chr8 HAVANA gene 26547669 26548463 795.0 + 0 ENSG00000253208.1 processed_pseudogene AC015743.1 1 OTTHUMG00000163884.1 pseudo_consens,overlapping_locus +57772 chr8 HAVANA gene 26514022 26658178 7305.0 + 0 ENSG00000092964.17 protein_coding DPYSL2 1 OTTHUMG00000099439.7 overlapping_locus +57773 chr8 HAVANA gene 26771790 26772140 351.0 + 0 ENSG00000240519.1 processed_pseudogene AC091675.1 1 OTTHUMG00000158584.1 pseudo_consens +57774 chr8 HAVANA gene 26835817 26836300 484.0 - 0 ENSG00000253813.1 processed_pseudogene COX6B1P4 1 OTTHUMG00000163885.1 pseudo_consens,overlapping_locus +57775 chr8 HAVANA gene 26748150 26867273 5848.0 - 0 ENSG00000120907.17 protein_coding ADRA1A 1 OTTHUMG00000099459.2 overlapping_locus +57776 chr8 HAVANA gene 27010486 27010746 261.0 + 0 ENSG00000275115.1 unprocessed_pseudogene AC067904.3 1 OTTHUMG00000187700.1 pseudo_consens +57777 chr8 HAVANA gene 27011147 27012371 1225.0 - 0 ENSG00000215288.4 processed_pseudogene AC067904.1 2 OTTHUMG00000163886.1 +57778 chr8 ENSEMBL gene 27048853 27048963 111.0 - 0 ENSG00000221616.1 miRNA MIR548H4 3 +57779 chr8 HAVANA gene 27063996 27065278 1283.0 - 0 ENSG00000253899.1 processed_pseudogene AC067904.2 2 OTTHUMG00000163887.1 +57780 chr8 HAVANA gene 27086076 27087783 815.0 + 0 ENSG00000253903.2 lincRNA AC090150.2 1 OTTHUMG00000163848.2 +57781 chr8 HAVANA gene 27184321 27210494 585.0 + 0 ENSG00000253888.1 antisense AC090150.1 2 OTTHUMG00000163849.1 +57782 chr8 HAVANA gene 27235323 27258420 3294.0 - 0 ENSG00000015592.16 protein_coding STMN4 2 OTTHUMG00000099461.3 +57783 chr8 HAVANA gene 27284887 27311319 4269.0 - 0 ENSG00000104228.12 protein_coding TRIM35 1 OTTHUMG00000102047.2 +57784 chr8 ENSEMBL gene 27433370 27433434 65.0 + 0 ENSG00000273836.1 miRNA MIR6842 3 +57785 chr8 HAVANA gene 27311482 27459391 7933.0 + 0 ENSG00000120899.17 protein_coding PTK2B 1 OTTHUMG00000102082.8 ncRNA_host +57786 chr8 HAVANA gene 27459761 27479883 5062.0 - 0 ENSG00000120903.12 protein_coding CHRNA2 2 OTTHUMG00000102083.10 +57787 chr8 HAVANA gene 27490779 27545564 4473.0 + 0 ENSG00000120915.13 protein_coding EPHX2 1 OTTHUMG00000102115.6 +57788 chr8 HAVANA gene 27560274 27589073 748.0 + 0 ENSG00000234770.1 unitary_pseudogene GULOP 2 OTTHUMG00000154895.1 +57789 chr8 ENSEMBL gene 27610601 27610751 151.0 - 0 ENSG00000284280.1 miRNA MIR6843 3 +57790 chr8 HAVANA gene 27596917 27615031 6616.0 - 0 ENSG00000120885.21 protein_coding CLU 1 OTTHUMG00000102114.7 ncRNA_host +57791 chr8 HAVANA gene 27633868 27676776 4031.0 + 0 ENSG00000168077.13 protein_coding SCARA3 2 OTTHUMG00000163898.4 +57792 chr8 ENSEMBL gene 27679836 27679935 100.0 + 0 ENSG00000222862.2 snRNA RNU6-1086P 3 +57793 chr8 HAVANA gene 27697217 27697526 310.0 - 0 ENSG00000253560.1 processed_pseudogene AC013643.1 1 OTTHUMG00000163899.1 pseudo_consens +57794 chr8 ENSEMBL gene 27701677 27701759 83.0 + 0 ENSG00000284351.1 miRNA MIR3622A 3 +57795 chr8 ENSEMBL gene 27701673 27701767 95.0 - 0 ENSG00000265075.1 miRNA MIR3622B 3 +57796 chr8 HAVANA gene 27701194 27703789 2596.0 + 0 ENSG00000279302.3 TEC AC013643.3 2 OTTHUMG00000173423.1 ncRNA_host +57797 chr8 HAVANA gene 27733338 27756426 584.0 + 0 ENSG00000253875.1 antisense AC013643.2 2 OTTHUMG00000163900.1 +57798 chr8 HAVANA gene 27733311 27772653 4415.0 - 0 ENSG00000147419.17 protein_coding CCDC25 2 OTTHUMG00000132173.4 +57799 chr8 ENSEMBL gene 27773645 27773748 104.0 + 0 ENSG00000202242.1 snRNA RNU6-1276P 3 +57800 chr8 HAVANA gene 27771949 27812640 7973.0 + 0 ENSG00000171320.14 protein_coding ESCO2 2 OTTHUMG00000163901.2 ncRNA_host +57801 chr8 HAVANA gene 27809620 27838095 2165.0 - 0 ENSG00000168078.9 protein_coding PBK 1 OTTHUMG00000102113.5 +57802 chr8 HAVANA gene 27838477 27840382 717.0 + 0 ENSG00000253176.3 processed_pseudogene AC104997.1 1 OTTHUMG00000163902.3 pseudo_consens +57803 chr8 ENSEMBL gene 27886039 27886116 78.0 - 0 ENSG00000265847.1 miRNA MIR4287 3 +57804 chr8 HAVANA gene 27903229 27903495 267.0 - 0 ENSG00000253290.1 unprocessed_pseudogene AC069113.1 2 OTTHUMG00000163928.1 overlapping_locus +57805 chr8 HAVANA gene 27903566 27903715 150.0 + 0 ENSG00000253615.1 unprocessed_pseudogene AC069113.3 2 OTTHUMG00000163929.1 +57806 chr8 HAVANA gene 27904481 27910310 359.0 + 0 ENSG00000253397.1 antisense AC069113.2 1 OTTHUMG00000163927.1 +57807 chr8 HAVANA gene 27869882 27992727 4435.0 - 0 ENSG00000168079.16 protein_coding SCARA5 2 OTTHUMG00000132172.3 ncRNA_host,overlapping_locus +57808 chr8 HAVANA gene 28021964 28083871 3959.0 - 0 ENSG00000189233.11 protein_coding NUGGC 2 OTTHUMG00000155970.4 +57809 chr8 HAVANA gene 28089673 28191156 5390.0 + 0 ENSG00000134014.16 protein_coding ELP3 1 OTTHUMG00000102124.3 +57810 chr8 HAVANA gene 28225929 28227562 936.0 + 0 ENSG00000250516.1 processed_pseudogene AC021678.1 1 OTTHUMG00000160401.1 pseudo_consens +57811 chr8 HAVANA gene 28238430 28238905 476.0 + 0 ENSG00000253907.1 processed_pseudogene AC021678.3 1 OTTHUMG00000163903.1 pseudo_consens +57812 chr8 HAVANA gene 28299683 28300566 884.0 + 0 ENSG00000239198.1 processed_pseudogene RPL5P22 1 OTTHUMG00000158585.1 pseudo_consens +57813 chr8 HAVANA gene 28250063 28339255 887.0 - 0 ENSG00000253690.1 antisense AC021678.2 2 OTTHUMG00000163904.1 +57814 chr8 HAVANA gene 28316986 28343355 2126.0 + 0 ENSG00000168081.8 protein_coding PNOC 2 OTTHUMG00000102125.4 +57815 chr8 HAVANA gene 28345585 28402701 5819.0 - 0 ENSG00000186918.13 protein_coding ZNF395 2 OTTHUMG00000102137.4 overlapping_locus +57816 chr8 ENSEMBL gene 28416448 28416551 104.0 + 0 ENSG00000207361.1 snRNA RNU6-178P 3 +57817 chr8 HAVANA gene 28415524 28420055 511.0 - 0 ENSG00000254370.1 sense_intronic AC025871.2 2 OTTHUMG00000163905.1 overlapping_locus +57818 chr8 HAVANA gene 28447264 28455902 733.0 + 0 ENSG00000253567.1 antisense AC025871.1 2 OTTHUMG00000163906.1 +57819 chr8 HAVANA gene 28348287 28490318 3972.0 - 0 ENSG00000214050.7 protein_coding FBXO16 1 OTTHUMG00000102147.4 overlapping_locus +57820 chr8 ENSEMBL gene 28505116 28505182 67.0 - 0 ENSG00000265251.1 miRNA MIR4288 3 +57821 chr8 ENSEMBL gene 28530411 28530519 109.0 + 0 ENSG00000202411.1 rRNA_pseudogene RNA5SP259 3 +57822 chr8 HAVANA gene 28494205 28574268 13787.0 + 0 ENSG00000104290.10 protein_coding FZD3 2 OTTHUMG00000102145.5 +57823 chr8 HAVANA gene 28696198 28701464 4261.0 - 0 ENSG00000246339.5 antisense EXTL3-AS1 2 OTTHUMG00000164029.3 +57824 chr8 HAVANA gene 28600469 28755599 13220.0 + 0 ENSG00000012232.8 protein_coding EXTL3 1 OTTHUMG00000102146.4 +57825 chr8 HAVANA gene 28798142 28802085 2625.0 + 0 ENSG00000254034.2 antisense INTS9-AS1 2 OTTHUMG00000164031.2 +57826 chr8 HAVANA gene 28810103 28810418 316.0 + 0 ENSG00000242958.1 processed_pseudogene AC040975.1 1 OTTHUMG00000158588.2 pseudo_consens +57827 chr8 HAVANA gene 28767661 28890242 4905.0 - 0 ENSG00000104299.14 protein_coding INTS9 1 OTTHUMG00000164030.2 +57828 chr8 ENSEMBL gene 28915579 28915864 286.0 - 0 ENSG00000273710.1 misc_RNA RF00017 3 +57829 chr8 HAVANA gene 28949676 28955955 347.0 + 0 ENSG00000259196.1 sense_intronic HMBOX1-IT1 2 OTTHUMG00000132209.5 overlapping_locus +57830 chr8 ENSEMBL gene 29048494 29048604 111.0 - 0 ENSG00000200719.1 rRNA_pseudogene RNA5SP260 3 +57831 chr8 HAVANA gene 29055935 29056685 552.0 + 0 ENSG00000259366.1 sense_intronic AC108449.2 2 OTTHUMG00000172135.1 overlapping_locus +57832 chr8 HAVANA gene 28890394 29064764 6634.0 + 0 ENSG00000147421.17 protein_coding HMBOX1 1 OTTHUMG00000172138.3 overlapping_locus +57833 chr8 HAVANA gene 29067279 29068454 585.0 + 0 ENSG00000259607.1 antisense AC108449.3 2 OTTHUMG00000172136.1 +57834 chr8 HAVANA gene 29110573 29140729 694.0 + 0 ENSG00000254129.1 antisense AC108449.1 1 OTTHUMG00000164033.1 +57835 chr8 HAVANA gene 29218905 29219472 568.0 + 0 ENSG00000253770.1 processed_pseudogene HMGB1P23 1 OTTHUMG00000164034.1 pseudo_consens +57836 chr8 HAVANA gene 29067279 29263124 11112.0 - 0 ENSG00000197892.12 protein_coding KIF13B 2 OTTHUMG00000164032.1 +57837 chr8 HAVANA gene 29333064 29350668 7257.0 - 0 ENSG00000120875.8 protein_coding DUSP4 1 OTTHUMG00000133395.2 +57838 chr8 HAVANA gene 29352420 29353170 751.0 - 0 ENSG00000260253.1 sense_overlapping AC084262.1 2 OTTHUMG00000172754.1 +57839 chr8 HAVANA gene 29351292 29360222 3263.0 + 0 ENSG00000285601.1 bidirectional_promoter_lncRNA AC084262.2 2 OTTHUMG00000192785.1 +57840 chr8 HAVANA gene 29527312 29530323 642.0 + 0 ENSG00000253632.1 lincRNA AC084026.2 2 OTTHUMG00000163795.1 +57841 chr8 HAVANA gene 29548171 29564341 564.0 + 0 ENSG00000253182.1 lincRNA AC084026.1 2 OTTHUMG00000163796.1 +57842 chr8 HAVANA gene 29587001 29588426 1426.0 + 0 ENSG00000280147.1 TEC AC084026.3 2 OTTHUMG00000173472.1 +57843 chr8 HAVANA gene 29632091 29632644 554.0 + 0 ENSG00000243844.1 processed_pseudogene RPL17P33 1 OTTHUMG00000158589.1 pseudo_consens +57844 chr8 HAVANA gene 29673922 29748109 2074.0 - 0 ENSG00000251191.7 lincRNA LINC00589 1 OTTHUMG00000163800.3 +57845 chr8 HAVANA gene 29748309 29798492 5541.0 + 0 ENSG00000253490.5 lincRNA LINC02099 2 OTTHUMG00000163801.2 +57846 chr8 HAVANA gene 29815004 29854543 2074.0 - 0 ENSG00000248964.6 lincRNA AC131254.1 2 OTTHUMG00000163812.3 +57847 chr8 HAVANA gene 29864644 29871661 564.0 + 0 ENSG00000254086.1 lincRNA AC131254.3 2 OTTHUMG00000163813.1 +57848 chr8 HAVANA gene 29905735 29908956 550.0 + 0 ENSG00000253604.1 lincRNA AC131254.2 2 OTTHUMG00000163814.1 +57849 chr8 HAVANA gene 29921513 29953724 2957.0 + 0 ENSG00000253279.5 lincRNA LINC02209 2 OTTHUMG00000163817.1 +57850 chr8 ENSEMBL gene 29957272 29957348 77.0 - 0 ENSG00000264788.1 miRNA MIR3148 3 +57851 chr8 HAVANA gene 30027713 30028900 1188.0 + 0 ENSG00000254013.1 processed_pseudogene MAP2K1P1 1 OTTHUMG00000163815.1 pseudo_consens +57852 chr8 ENSEMBL gene 30043801 30043908 108.0 - 0 ENSG00000239175.1 snRNA RNU6-1218P 3 +57853 chr8 HAVANA gene 30063012 30083208 2990.0 - 0 ENSG00000133872.13 protein_coding SARAF 1 OTTHUMG00000133397.6 +57854 chr8 HAVANA gene 30082758 30083467 710.0 + 0 ENSG00000272256.1 antisense AC044849.1 2 OTTHUMG00000185429.1 +57855 chr8 HAVANA gene 30117384 30117779 396.0 - 0 ENSG00000241511.1 processed_pseudogene RPS15AP24 1 OTTHUMG00000158590.1 pseudo_consens +57856 chr8 HAVANA gene 30131824 30144686 1512.0 - 0 ENSG00000177669.3 protein_coding MBOAT4 2 OTTHUMG00000163824.1 +57857 chr8 HAVANA gene 30155830 30156232 403.0 - 0 ENSG00000271869.1 lincRNA AC026979.2 2 OTTHUMG00000185430.1 +57858 chr8 HAVANA gene 30095398 30177208 5421.0 + 0 ENSG00000104660.18 protein_coding LEPROTL1 1 OTTHUMG00000163820.6 overlapping_locus +57859 chr8 HAVANA gene 30176554 30180888 583.0 - 0 ENSG00000253708.1 antisense AC026979.1 2 OTTHUMG00000163830.1 +57860 chr8 HAVANA gene 30156297 30183640 1984.0 + 0 ENSG00000104671.7 protein_coding DCTN6 2 OTTHUMG00000163828.2 overlapping_locus +57861 chr8 HAVANA gene 30197404 30198048 645.0 + 0 ENSG00000272375.1 lincRNA AC026979.3 2 OTTHUMG00000185431.1 overlapping_locus +57862 chr8 HAVANA gene 30192429 30201332 4587.0 + 0 ENSG00000285669.1 lincRNA AC026979.4 2 OTTHUMG00000192824.1 overlapping_locus +57863 chr8 HAVANA gene 30237382 30240997 1898.0 + 0 ENSG00000248159.1 processed_pseudogene HSPA8P11 1 OTTHUMG00000160402.1 pseudo_consens +57864 chr8 HAVANA gene 30249502 30250092 591.0 - 0 ENSG00000254316.1 processed_pseudogene AC090820.1 1 OTTHUMG00000163831.1 pseudo_consens +57865 chr8 HAVANA gene 30331961 30332277 317.0 - 0 ENSG00000253346.1 processed_pseudogene AC109329.1 1 OTTHUMG00000163832.1 pseudo_consens +57866 chr8 HAVANA gene 30349866 30350347 482.0 - 0 ENSG00000254152.1 processed_pseudogene PPIAP84 1 OTTHUMG00000163833.1 pseudo_consens +57867 chr8 HAVANA gene 30351873 30353518 1646.0 + 0 ENSG00000127589.4 transcribed_processed_pseudogene TUBBP1 1 OTTHUMG00000163834.1 pseudo_consens +57868 chr8 HAVANA gene 30382119 30385401 1171.0 - 0 ENSG00000254109.5 antisense RBPMS-AS1 2 OTTHUMG00000163930.1 +57869 chr8 HAVANA gene 30552345 30553766 1422.0 + 0 ENSG00000279041.1 TEC AC102945.2 2 OTTHUMG00000163910.1 overlapping_locus +57870 chr8 HAVANA gene 30384479 30572261 8931.0 + 0 ENSG00000157110.15 protein_coding RBPMS 1 OTTHUMG00000163845.7 overlapping_locus +57871 chr8 HAVANA gene 30596914 30597532 407.0 + 0 ENSG00000253112.1 antisense AC102945.1 1 OTTHUMG00000163935.1 +57872 chr8 ENSEMBL gene 30643689 30643802 114.0 + 0 ENSG00000254172.1 snRNA RNU5A-3P 3 +57873 chr8 HAVANA gene 30638600 30646064 955.0 + 0 ENSG00000253457.2 protein_coding SMIM18 2 OTTHUMG00000163839.1 ncRNA_host +57874 chr8 HAVANA gene 30578318 30658251 2595.0 - 0 ENSG00000197265.8 protein_coding GTF2E2 2 OTTHUMG00000163934.3 +57875 chr8 HAVANA gene 30678061 30727999 3760.0 - 0 ENSG00000104687.13 protein_coding GSR 2 OTTHUMG00000163946.8 +57876 chr8 HAVANA gene 30754236 30754539 304.0 - 0 ENSG00000271081.1 processed_pseudogene AC009314.1 1 OTTHUMG00000184836.1 pseudo_consens +57877 chr8 HAVANA gene 30732247 30767006 3217.0 + 0 ENSG00000104691.14 protein_coding UBXN8 1 OTTHUMG00000163851.10 +57878 chr8 HAVANA gene 30774457 30814314 4516.0 - 0 ENSG00000104695.12 protein_coding PPP2CB 2 OTTHUMG00000163949.3 +57879 chr8 HAVANA gene 30831544 30913003 11864.0 - 0 ENSG00000133863.8 protein_coding TEX15 2 OTTHUMG00000163881.4 +57880 chr8 HAVANA gene 30921060 30921335 276.0 + 0 ENSG00000253204.1 processed_pseudogene AC090281.1 1 OTTHUMG00000163882.1 pseudo_consens +57881 chr8 HAVANA gene 30983459 30984321 863.0 - 0 ENSG00000253793.1 processed_pseudogene AC008066.1 2 OTTHUMG00000163912.1 +57882 chr8 HAVANA gene 30995802 31033715 3771.0 - 0 ENSG00000172733.11 protein_coding PURG 1 OTTHUMG00000157357.6 +57883 chr8 HAVANA gene 31131539 31131802 264.0 - 0 ENSG00000253579.1 processed_pseudogene SUMO2P16 1 OTTHUMG00000163895.2 pseudo_consens +57884 chr8 HAVANA gene 31033801 31173769 5634.0 + 0 ENSG00000165392.9 protein_coding WRN 2 OTTHUMG00000163894.2 +57885 chr8 HAVANA gene 31167078 31177167 758.0 - 0 ENSG00000253961.1 antisense AC009563.1 1 OTTHUMG00000163915.1 +57886 chr8 HAVANA gene 31219894 31220984 950.0 - 0 ENSG00000229211.3 processed_pseudogene KCTD9P6 1 OTTHUMG00000163896.1 pseudo_consens +57887 chr8 HAVANA gene 31339197 31346479 1228.0 + 0 ENSG00000254095.1 processed_transcript AC068672.3 1 OTTHUMG00000163913.1 overlapping_locus +57888 chr8 HAVANA gene 31275596 31384279 336.0 + 0 ENSG00000253377.1 lincRNA AC068672.2 2 OTTHUMG00000163916.1 overlapping_locus +57889 chr8 HAVANA gene 31497423 31498612 328.0 + 0 ENSG00000253275.1 lincRNA AC068672.1 2 OTTHUMG00000163914.1 +57890 chr8 ENSEMBL gene 31598099 31598204 106.0 - 0 ENSG00000222468.1 rRNA_pseudogene RNA5SP261 3 +57891 chr8 HAVANA gene 32026219 32139475 1695.0 + 0 ENSG00000253974.5 sense_intronic NRG1-IT1 2 OTTHUMG00000163966.2 overlapping_locus +57892 chr8 ENSEMBL gene 32192028 32192153 126.0 - 0 ENSG00000252261.1 rRNA_pseudogene RNA5SP262 3 +57893 chr8 ENSEMBL gene 32256496 32256623 128.0 + 0 ENSG00000200246.1 rRNA_pseudogene RNA5SP263 3 +57894 chr8 HAVANA gene 32440746 32442725 505.0 + 0 ENSG00000254049.1 sense_intronic NRG1-IT3 2 OTTHUMG00000164003.1 overlapping_locus +57895 chr8 HAVANA gene 31639386 32767959 11328.0 + 0 ENSG00000157168.18 protein_coding NRG1 2 OTTHUMG00000163918.11 overlapping_locus +57896 chr8 ENSEMBL gene 32911493 32911598 106.0 - 0 ENSG00000212407.1 snRNA RNU6-663P 3 +57897 chr8 HAVANA gene 33014081 33015026 946.0 + 0 ENSG00000254346.2 processed_pseudogene MTND1P6 2 OTTHUMG00000163931.2 overlapping_locus +57898 chr8 HAVANA gene 33015261 33017043 1038.0 + 0 ENSG00000254090.1 processed_pseudogene MTND2P32 2 OTTHUMG00000163932.3 overlapping_locus +57899 chr8 HAVANA gene 33039523 33039793 271.0 + 0 ENSG00000253393.1 processed_pseudogene RANP9 1 OTTHUMG00000163933.1 pseudo_consens,overlapping_locus +57900 chr8 HAVANA gene 32996178 33044855 765.0 + 0 ENSG00000247134.6 lincRNA AC090204.1 2 OTTHUMG00000163952.1 overlapping_locus +57901 chr8 HAVANA gene 33226848 33227147 300.0 - 0 ENSG00000253993.1 processed_pseudogene AC104027.1 1 OTTHUMG00000163953.1 pseudo_consens +57902 chr8 ENSEMBL gene 33338867 33338966 100.0 + 0 ENSG00000252735.1 snRNA RNU6-528P 3 +57903 chr8 HAVANA gene 33360839 33361415 577.0 - 0 ENSG00000272338.2 lincRNA AC067838.1 2 OTTHUMG00000185434.2 +57904 chr8 HAVANA gene 33436268 33436700 433.0 - 0 ENSG00000254061.1 processed_pseudogene AC091144.2 1 OTTHUMG00000163955.1 pseudo_consens,overlapping_locus +57905 chr8 HAVANA gene 33370824 33473422 5606.0 - 0 ENSG00000172728.15 protein_coding FUT10 1 OTTHUMG00000163954.2 overlapping_locus +57906 chr8 HAVANA gene 33484750 33501260 4846.0 + 0 ENSG00000198042.10 protein_coding MAK16 2 OTTHUMG00000163957.4 +57907 chr8 ENSEMBL gene 33513475 33513578 104.0 + 0 ENSG00000239039.1 snoRNA SNORD13 3 +57908 chr8 HAVANA gene 33473386 33513601 4222.0 - 0 ENSG00000129696.12 protein_coding TTI2 1 OTTHUMG00000163956.4 overlapping_locus +57909 chr8 HAVANA gene 33523154 33523291 138.0 + 0 ENSG00000253232.1 processed_pseudogene AC091144.1 1 OTTHUMG00000163979.1 pseudo_consens +57910 chr8 ENSEMBL gene 33540040 33540137 98.0 + 0 ENSG00000252505.1 snoRNA RF00156 3 +57911 chr8 HAVANA gene 33540185 33540493 309.0 + 0 ENSG00000253995.1 processed_pseudogene RPL10P18 2 OTTHUMG00000163959.1 +57912 chr8 HAVANA gene 33547755 33567125 1868.0 - 0 ENSG00000133874.1 protein_coding RNF122 2 OTTHUMG00000163960.1 +57913 chr8 ENSEMBL gene 33580210 33580508 299.0 - 0 ENSG00000240189.3 misc_RNA RN7SL621P 3 +57914 chr8 HAVANA gene 33591332 33600106 2052.0 - 0 ENSG00000133878.8 protein_coding DUSP26 2 OTTHUMG00000163961.4 +57915 chr8 HAVANA gene 33641581 33641939 359.0 - 0 ENSG00000253684.1 processed_pseudogene BUD31P1 1 OTTHUMG00000163963.1 pseudo_consens +57916 chr8 ENSEMBL gene 33715784 33716070 287.0 + 0 ENSG00000263794.2 misc_RNA RN7SL457P 3 +57917 chr8 HAVANA gene 33722305 33723079 775.0 - 0 ENSG00000253569.1 processed_pseudogene VENTXP5 1 OTTHUMG00000163947.1 pseudo_consens +57918 chr8 HAVANA gene 33859480 33860223 744.0 - 0 ENSG00000240738.1 processed_pseudogene AF279873.2 1 OTTHUMG00000158592.1 pseudo_consens +57919 chr8 HAVANA gene 33969567 33969879 313.0 - 0 ENSG00000188512.6 processed_pseudogene AF279873.1 2 OTTHUMG00000163948.1 +57920 chr8 HAVANA gene 33973701 34009595 511.0 - 0 ENSG00000254194.5 lincRNA AF279873.4 2 OTTHUMG00000163989.1 +57921 chr8 HAVANA gene 33604856 34039008 1418.0 + 0 ENSG00000253642.5 lincRNA AF279873.3 2 OTTHUMG00000163972.4 ncRNA_host +57922 chr8 HAVANA gene 34174886 34184895 537.0 + 0 ENSG00000254302.1 lincRNA AC087855.2 2 OTTHUMG00000163985.1 +57923 chr8 HAVANA gene 34229294 34248946 430.0 - 0 ENSG00000254033.1 lincRNA AC087855.1 1 OTTHUMG00000163991.1 +57924 chr8 HAVANA gene 34322992 34323642 651.0 - 0 ENSG00000215264.4 processed_pseudogene RPL10AP3 1 OTTHUMG00000158593.1 pseudo_consens +57925 chr8 HAVANA gene 34228439 34346731 582.0 + 0 ENSG00000253108.1 lincRNA AC090993.1 2 OTTHUMG00000163990.1 +57926 chr8 HAVANA gene 34784052 34864798 529.0 + 0 ENSG00000254344.2 lincRNA LINC01288 2 OTTHUMG00000163964.2 +57927 chr8 HAVANA gene 34874159 34874633 475.0 + 0 ENSG00000243181.2 processed_pseudogene AC087343.1 1 OTTHUMG00000158594.2 pseudo_consens +57928 chr8 HAVANA gene 35254344 35256605 2262.0 + 0 ENSG00000279099.1 TEC AC090740.1 2 OTTHUMG00000163984.1 overlapping_locus +57929 chr8 HAVANA gene 35525176 35525763 588.0 - 0 ENSG00000232024.2 processed_pseudogene LSM12P1 2 OTTHUMG00000157150.1 +57930 chr8 HAVANA gene 35235457 35796550 10816.0 + 0 ENSG00000156687.10 protein_coding UNC5D 1 OTTHUMG00000157145.2 overlapping_locus +57931 chr8 HAVANA gene 35862123 35970665 777.0 + 0 ENSG00000253452.5 lincRNA AC100818.1 2 OTTHUMG00000163986.1 +57932 chr8 HAVANA gene 36004316 36095046 442.0 - 0 ENSG00000253524.1 lincRNA AC124290.1 2 OTTHUMG00000163987.1 +57933 chr8 HAVANA gene 36121398 36121683 286.0 - 0 ENSG00000254309.1 processed_pseudogene AC124290.2 1 OTTHUMG00000163973.1 pseudo_consens +57934 chr8 HAVANA gene 36277763 36278886 1124.0 - 0 ENSG00000253504.1 unprocessed_pseudogene MTCYBP19 2 OTTHUMG00000163974.1 +57935 chr8 HAVANA gene 36278960 36279483 524.0 + 0 ENSG00000254384.1 unprocessed_pseudogene MTND6P19 2 OTTHUMG00000163975.1 +57936 chr8 HAVANA gene 36279491 36279696 206.0 - 0 ENSG00000253685.1 unprocessed_pseudogene MTND5P41 2 OTTHUMG00000163976.1 +57937 chr8 HAVANA gene 36308245 36308364 120.0 + 0 ENSG00000253610.1 processed_pseudogene AP006245.1 1 OTTHUMG00000163977.1 pseudo_consens +57938 chr8 ENSEMBL gene 36309584 36309690 107.0 - 0 ENSG00000206871.1 snRNA RNU6-533P 3 +57939 chr8 HAVANA gene 36321039 36321404 300.0 - 0 ENSG00000254320.1 processed_pseudogene AP006245.2 1 OTTHUMG00000163978.1 pseudo_consens +57940 chr8 HAVANA gene 36581180 36581591 412.0 - 0 ENSG00000244708.1 processed_pseudogene RPL23P10 1 OTTHUMG00000158595.2 pseudo_consens,overlapping_locus +57941 chr8 ENSEMBL gene 36764445 36764551 107.0 + 0 ENSG00000199985.1 rRNA_pseudogene RNA5SP264 3 +57942 chr8 HAVANA gene 36537391 36779164 673.0 - 0 ENSG00000253363.5 lincRNA AC090809.1 2 OTTHUMG00000163980.2 overlapping_locus +57943 chr8 HAVANA gene 36795255 36795862 608.0 - 0 ENSG00000274489.1 processed_pseudogene AC124076.1 1 OTTHUMG00000187704.1 pseudo_consens +57944 chr8 HAVANA gene 36888482 36889307 555.0 + 0 ENSG00000219491.6 unprocessed_pseudogene TPT1P8 1 OTTHUMG00000160404.3 pseudo_consens,overlapping_locus +57945 chr8 HAVANA gene 36784324 36936128 3969.0 + 0 ENSG00000215262.7 protein_coding KCNU1 1 OTTHUMG00000163981.2 overlapping_locus +57946 chr8 HAVANA gene 36987977 36988412 436.0 - 0 ENSG00000243503.2 processed_pseudogene AC090453.1 1 OTTHUMG00000158604.2 pseudo_consens +57947 chr8 HAVANA gene 37067441 37069418 639.0 - 0 ENSG00000254038.1 lincRNA AC092818.1 1 OTTHUMG00000163982.1 +57948 chr8 HAVANA gene 37095150 37095390 241.0 + 0 ENSG00000253650.1 processed_pseudogene SMARCE1P4 1 OTTHUMG00000163983.1 pseudo_consens +57949 chr8 HAVANA gene 37326575 37331984 4239.0 - 0 ENSG00000253123.3 processed_transcript AC091182.1 1 OTTHUMG00000163995.1 +57950 chr8 HAVANA gene 37405439 37406724 578.0 - 0 ENSG00000253746.1 lincRNA AC091182.2 2 OTTHUMG00000164278.1 +57951 chr8 HAVANA gene 37480089 37480809 169.0 + 0 ENSG00000253388.1 lincRNA AC124067.1 2 OTTHUMG00000163997.1 +57952 chr8 HAVANA gene 37516410 37517021 510.0 - 0 ENSG00000253414.2 sense_intronic AC124067.2 2 OTTHUMG00000164286.2 overlapping_locus +57953 chr8 HAVANA gene 37421341 37554183 1522.0 - 0 ENSG00000253161.5 lincRNA LINC01605 2 OTTHUMG00000163996.2 overlapping_locus +57954 chr8 HAVANA gene 37560366 37565377 847.0 + 0 ENSG00000254111.2 lincRNA AC124067.3 1 OTTHUMG00000164287.2 +57955 chr8 HAVANA gene 37597480 37599858 2379.0 - 0 ENSG00000254290.1 lincRNA AC124067.4 2 OTTHUMG00000163998.1 +57956 chr8 HAVANA gene 37600537 37625873 551.0 - 0 ENSG00000254306.1 lincRNA AC137579.2 2 OTTHUMG00000163999.1 +57957 chr8 ENSEMBL gene 37668898 37669005 108.0 + 0 ENSG00000223215.1 snRNA RNU6-607P 3 +57958 chr8 HAVANA gene 37626015 37674387 836.0 - 0 ENSG00000253344.1 antisense AC137579.1 2 OTTHUMG00000164000.1 +57959 chr8 HAVANA gene 37695751 37700021 3349.0 + 0 ENSG00000183779.6 protein_coding ZNF703 2 OTTHUMG00000164001.3 +57960 chr8 HAVANA gene 37717579 37733756 1228.0 + 0 ENSG00000253181.1 antisense AC138356.3 1 OTTHUMG00000164004.1 +57961 chr8 HAVANA gene 37734761 37737426 2086.0 - 0 ENSG00000183154.1 antisense AC138356.1 2 OTTHUMG00000164036.1 +57962 chr8 HAVANA gene 37747338 37748004 667.0 - 0 ENSG00000233170.4 processed_pseudogene AC138356.2 2 OTTHUMG00000164006.3 +57963 chr8 HAVANA gene 37736601 37759101 9415.0 + 0 ENSG00000147475.15 protein_coding ERLIN2 1 OTTHUMG00000164005.8 +57964 chr8 HAVANA gene 37762593 37779767 3428.0 + 0 ENSG00000147471.11 protein_coding PLPBP 1 OTTHUMG00000164024.4 +57965 chr8 HAVANA gene 37784191 37844896 7061.0 + 0 ENSG00000020181.17 protein_coding ADGRA2 2 OTTHUMG00000156182.5 +57966 chr8 HAVANA gene 37843268 37849904 2760.0 - 0 ENSG00000104221.12 protein_coding BRF2 2 OTTHUMG00000164025.2 +57967 chr8 HAVANA gene 37858949 37861333 2385.0 + 0 ENSG00000280064.1 TEC AC130304.1 2 OTTHUMG00000164037.2 +57968 chr8 HAVANA gene 37858618 37899467 9602.0 - 0 ENSG00000156675.15 protein_coding RAB11FIP1 2 OTTHUMG00000164026.3 +57969 chr8 ENSEMBL gene 37908738 37909037 300.0 + 0 ENSG00000241032.3 misc_RNA RN7SL709P 3 +57970 chr8 HAVANA gene 37934281 37940129 1589.0 - 0 ENSG00000169154.6 protein_coding GOT1L1 1 OTTHUMG00000164027.4 overlapping_locus +57971 chr8 HAVANA gene 37934340 37965953 1565.0 - 0 ENSG00000285880.1 protein_coding AC144573.1 2 OTTHUMG00000193361.1 +57972 chr8 HAVANA gene 37962991 37966965 3241.0 - 0 ENSG00000188778.5 protein_coding ADRB3 2 OTTHUMG00000164028.4 overlapping_locus,retrogene +57973 chr8 HAVANA gene 37983070 37983373 304.0 + 0 ENSG00000270865.1 processed_pseudogene RPL12P48 1 OTTHUMG00000184791.1 pseudo_consens +57974 chr8 HAVANA gene 38030341 38060365 1073.0 + 0 ENSG00000187840.4 protein_coding EIF4EBP1 2 OTTHUMG00000164012.1 +57975 chr8 HAVANA gene 38062881 38063791 911.0 + 0 ENSG00000260949.1 sense_overlapping AP006545.1 2 OTTHUMG00000164002.1 +57976 chr8 HAVANA gene 38099471 38099931 461.0 + 0 ENSG00000272128.1 lincRNA AP006545.2 2 OTTHUMG00000185441.1 +57977 chr8 ENSEMBL gene 38122374 38122480 107.0 + 0 ENSG00000253437.1 snRNA RNU6-988P 3 +57978 chr8 HAVANA gene 38123274 38124651 621.0 + 0 ENSG00000240015.2 antisense AC084024.1 2 OTTHUMG00000164042.1 overlapping_locus +57979 chr8 HAVANA gene 38105242 38144076 5910.0 + 0 ENSG00000129691.15 protein_coding ASH2L 1 OTTHUMG00000164016.7 ncRNA_host,overlapping_locus +57980 chr8 HAVANA gene 38143649 38151265 3767.0 - 0 ENSG00000147465.11 protein_coding STAR 1 OTTHUMG00000164058.7 +57981 chr8 HAVANA gene 38148741 38163772 562.0 + 0 ENSG00000253356.1 antisense AC084024.3 1 OTTHUMG00000164013.1 +57982 chr8 ENSEMBL gene 38166012 38166118 107.0 - 0 ENSG00000253739.1 snRNA RNU6-323P 3 +57983 chr8 HAVANA gene 38163321 38176730 1690.0 - 0 ENSG00000175324.9 protein_coding LSM1 1 OTTHUMG00000164051.1 ncRNA_host +57984 chr8 HAVANA gene 38201699 38204238 791.0 - 0 ENSG00000248585.2 processed_pseudogene AC084024.2 1 OTTHUMG00000160439.2 pseudo_consens +57985 chr8 HAVANA gene 38176533 38213301 4809.0 + 0 ENSG00000156735.10 protein_coding BAG4 2 OTTHUMG00000164064.2 +57986 chr8 HAVANA gene 38223957 38231695 1039.0 - 0 ENSG00000285632.1 bidirectional_promoter_lncRNA AC084024.4 2 OTTHUMG00000193104.1 +57987 chr8 HAVANA gene 38263130 38269243 4102.0 - 0 ENSG00000147535.16 protein_coding PLPP5 1 OTTHUMG00000165104.4 +57988 chr8 HAVANA gene 38225218 38275558 10686.0 + 0 ENSG00000085788.13 protein_coding DDHD2 1 OTTHUMG00000164095.6 +57989 chr8 HAVANA gene 38275888 38276680 256.0 + 0 ENSG00000255487.1 antisense AC087362.2 2 OTTHUMG00000165119.1 +57990 chr8 HAVANA gene 38335981 38337551 434.0 + 0 ENSG00000254898.1 antisense AC087362.1 1 OTTHUMG00000165103.2 +57991 chr8 HAVANA gene 38269697 38382272 15252.0 - 0 ENSG00000147548.16 protein_coding NSD3 2 OTTHUMG00000165115.9 +57992 chr8 HAVANA gene 38382364 38383461 1098.0 + 0 ENSG00000272092.1 lincRNA AC087623.2 2 OTTHUMG00000185445.1 +57993 chr8 HAVANA gene 38408048 38408742 695.0 - 0 ENSG00000272159.1 antisense AC087623.3 2 OTTHUMG00000185446.1 +57994 chr8 HAVANA gene 38386207 38409527 6114.0 + 0 ENSG00000165046.12 protein_coding LETM2 2 OTTHUMG00000165059.6 +57995 chr8 HAVANA gene 38421889 38426096 534.0 + 0 ENSG00000255201.1 antisense AC087623.1 2 OTTHUMG00000165120.1 +57996 chr8 HAVANA gene 38434347 38435664 1318.0 - 0 ENSG00000239218.2 transcribed_processed_pseudogene RPS20P22 1 OTTHUMG00000158605.2 pseudo_consens,overlapping_locus +57997 chr8 HAVANA gene 38400215 38468834 13842.0 - 0 ENSG00000077782.20 protein_coding FGFR1 1 OTTHUMG00000147366.14 overlapping_locus +57998 chr8 HAVANA gene 38543652 38560877 2145.0 - 0 ENSG00000253361.2 lincRNA AC069120.1 2 OTTHUMG00000163994.2 overlapping_locus +57999 chr8 HAVANA gene 38510834 38560939 2762.0 - 0 ENSG00000196166.4 protein_coding C8orf86 1 OTTHUMG00000163992.2 +58000 chr8 HAVANA gene 38600661 38601200 540.0 - 0 ENSG00000253570.1 processed_pseudogene RNF5P1 1 OTTHUMG00000163988.1 pseudo_consens +58001 chr8 HAVANA gene 38700626 38704855 735.0 - 0 ENSG00000254321.1 lincRNA AC016813.1 2 OTTHUMG00000164086.1 +58002 chr8 ENSEMBL gene 38744020 38744131 112.0 + 0 ENSG00000207258.1 misc_RNA RF00019 3 +58003 chr8 HAVANA gene 38799643 38802296 356.0 + 0 ENSG00000253586.1 sense_intronic AC067817.1 1 OTTHUMG00000164068.1 overlapping_locus +58004 chr8 HAVANA gene 38844866 38846439 387.0 - 0 ENSG00000253829.1 antisense AC067817.2 2 OTTHUMG00000164087.1 +58005 chr8 HAVANA gene 38728186 38853028 12609.0 + 0 ENSG00000147526.19 protein_coding TACC1 1 OTTHUMG00000164018.11 ncRNA_host,overlapping_locus +58006 chr8 HAVANA gene 38970360 38973011 650.0 - 0 ENSG00000253645.1 antisense AC108863.1 2 OTTHUMG00000164094.1 +58007 chr8 HAVANA gene 38901235 38973909 6325.0 + 0 ENSG00000169499.14 protein_coding PLEKHA2 1 OTTHUMG00000164069.8 +58008 chr8 HAVANA gene 38974164 38988662 2095.0 + 0 ENSG00000169495.4 protein_coding HTRA4 2 OTTHUMG00000164070.3 +58009 chr8 HAVANA gene 38988808 38996824 4459.0 - 0 ENSG00000169490.16 protein_coding TM2D2 2 OTTHUMG00000164098.3 +58010 chr8 ENSEMBL gene 39018615 39018683 69.0 - 0 ENSG00000207199.1 snoRNA RF00212 3 +58011 chr8 HAVANA gene 38996869 39105144 6913.0 + 0 ENSG00000168615.11 protein_coding ADAM9 1 OTTHUMG00000159783.4 +58012 chr8 HAVANA gene 39157538 39158701 1164.0 - 0 ENSG00000243095.1 processed_pseudogene RPL3P10 1 OTTHUMG00000158606.1 pseudo_consens +58013 chr8 HAVANA gene 39106990 39284911 10044.0 + 0 ENSG00000197140.14 protein_coding ADAM32 1 OTTHUMG00000164071.5 +58014 chr8 HAVANA gene 39309909 39310443 535.0 - 0 ENSG00000253160.1 processed_pseudogene AC105185.1 1 OTTHUMG00000164099.1 pseudo_consens +58015 chr8 HAVANA gene 39314591 39417378 2852.0 + 0 ENSG00000196115.13 transcribed_unitary_pseudogene ADAM5 2 OTTHUMG00000154982.4 +58016 chr8 HAVANA gene 39451045 39522852 2999.0 - 0 ENSG00000197475.11 transcribed_unitary_pseudogene ADAM3A 2 OTTHUMG00000154991.2 +58017 chr8 HAVANA gene 39522976 39580134 2023.0 + 0 ENSG00000254067.2 transcribed_unitary_pseudogene AC123767.1 1 OTTHUMG00000187708.2 +58018 chr8 HAVANA gene 39584489 39730064 3825.0 + 0 ENSG00000168619.15 protein_coding ADAM18 2 OTTHUMG00000164040.2 +58019 chr8 HAVANA gene 39743735 39838289 2905.0 - 0 ENSG00000104755.14 protein_coding ADAM2 1 OTTHUMG00000164041.3 +58020 chr8 HAVANA gene 39860219 39860525 307.0 + 0 ENSG00000253332.1 processed_pseudogene AP005902.2 2 OTTHUMG00000164056.1 +58021 chr8 HAVANA gene 39867436 39867812 186.0 - 0 ENSG00000253233.1 processed_pseudogene AP005902.1 2 OTTHUMG00000164721.1 +58022 chr8 HAVANA gene 39914229 39915721 102.0 + 0 ENSG00000253838.1 sense_intronic AC007991.2 2 OTTHUMG00000164188.1 overlapping_locus +58023 chr8 HAVANA gene 39918076 39920890 605.0 - 0 ENSG00000254287.1 antisense AC007991.4 2 OTTHUMG00000164193.1 overlapping_locus +58024 chr8 HAVANA gene 39902275 39928444 3261.0 + 0 ENSG00000131203.12 protein_coding IDO1 2 OTTHUMG00000164057.5 overlapping_locus +58025 chr8 HAVANA gene 39903775 39995248 502.0 - 0 ENSG00000253939.1 antisense AC007991.3 2 OTTHUMG00000164192.2 overlapping_locus +58026 chr8 HAVANA gene 39997869 39998499 631.0 - 0 ENSG00000253790.1 processed_pseudogene AC007991.1 1 OTTHUMG00000164194.1 pseudo_consens +58027 chr8 HAVANA gene 39934614 40016391 4444.0 + 0 ENSG00000188676.13 protein_coding IDO2 2 OTTHUMG00000141271.3 +58028 chr8 HAVANA gene 40104169 40107935 187.0 + 0 ENSG00000253381.1 lincRNA AC087518.1 2 OTTHUMG00000164043.1 +58029 chr8 HAVANA gene 40114651 40127468 739.0 + 0 ENSG00000253665.1 lincRNA AC022733.1 1 OTTHUMG00000164044.1 +58030 chr8 HAVANA gene 40153455 40155308 1854.0 + 0 ENSG00000176907.4 protein_coding TCIM 2 OTTHUMG00000164045.1 +58031 chr8 HAVANA gene 40161458 40172612 531.0 + 0 ENSG00000254143.1 lincRNA AC022733.2 2 OTTHUMG00000164046.1 +58032 chr8 HAVANA gene 40298741 40343402 1583.0 - 0 ENSG00000253802.1 lincRNA SIRLNT 2 OTTHUMG00000164047.1 +58033 chr8 HAVANA gene 40370028 40401848 473.0 + 0 ENSG00000253354.1 lincRNA AC105999.1 2 OTTHUMG00000164048.1 +58034 chr8 HAVANA gene 40519565 40520158 594.0 - 0 ENSG00000272479.1 lincRNA AC010857.1 2 OTTHUMG00000185447.1 +58035 chr8 HAVANA gene 40530590 40897833 3691.0 - 0 ENSG00000165061.14 protein_coding ZMAT4 2 OTTHUMG00000164049.2 +58036 chr8 HAVANA gene 40900016 40901854 494.0 - 0 ENSG00000254383.1 lincRNA AC048387.1 1 OTTHUMG00000164050.1 +58037 chr8 ENSEMBL gene 41032892 41032998 107.0 + 0 ENSG00000206867.1 snRNA RNU6-356P 3 +58038 chr8 ENSEMBL gene 41271048 41271143 96.0 - 0 ENSG00000263372.1 miRNA MIR548AO 3 +58039 chr8 HAVANA gene 41271431 41271566 136.0 + 0 ENSG00000239281.2 processed_pseudogene RPS29P2 1 OTTHUMG00000158607.2 pseudo_consens +58040 chr8 HAVANA gene 41275115 41277003 255.0 - 0 ENSG00000253509.1 sense_intronic AC104393.1 2 OTTHUMG00000164075.2 overlapping_locus +58041 chr8 ENSEMBL gene 41298163 41298265 103.0 + 0 ENSG00000206852.1 snRNA RNU6-895P 3 +58042 chr8 HAVANA gene 41261958 41309497 4761.0 - 0 ENSG00000104332.11 protein_coding SFRP1 1 OTTHUMG00000164074.2 ncRNA_host,overlapping_locus +58043 chr8 ENSEMBL gene 41426655 41426727 73.0 + 0 ENSG00000238936.1 snoRNA SNORD65B 3 +58044 chr8 HAVANA gene 41435298 41440419 523.0 + 0 ENSG00000253396.1 lincRNA AC016868.1 2 OTTHUMG00000164076.1 +58045 chr8 HAVANA gene 41490396 41510980 2474.0 + 0 ENSG00000147533.16 protein_coding GOLGA7 2 OTTHUMG00000164077.1 +58046 chr8 HAVANA gene 41511240 41512521 1282.0 + 0 ENSG00000253943.1 processed_pseudogene KRT18P37 1 OTTHUMG00000164078.1 pseudo_consens +58047 chr8 HAVANA gene 41540381 41545044 1189.0 - 0 ENSG00000253174.2 antisense AC009630.2 2 OTTHUMG00000164081.2 overlapping_locus +58048 chr8 HAVANA gene 41529206 41545046 5475.0 + 0 ENSG00000147536.11 protein_coding GINS4 2 OTTHUMG00000164079.2 +58049 chr8 HAVANA gene 41534155 41578368 559.0 - 0 ENSG00000253133.1 antisense AC009630.1 1 OTTHUMG00000164080.2 overlapping_locus +58050 chr8 HAVANA gene 41609692 41621502 729.0 - 0 ENSG00000264578.1 antisense AC009630.3 2 OTTHUMG00000179554.1 +58051 chr8 HAVANA gene 41577187 41625001 7939.0 + 0 ENSG00000158669.11 protein_coding GPAT4 1 OTTHUMG00000164082.4 +58052 chr8 HAVANA gene 41645178 41650669 2412.0 - 0 ENSG00000165066.12 protein_coding NKX6-3 1 OTTHUMG00000164083.3 +58053 chr8 ENSEMBL gene 41660444 41660507 64.0 + 0 ENSG00000283450.1 miRNA MIR486-2 3 +58054 chr8 ENSEMBL gene 41660441 41660508 68.0 - 0 ENSG00000274705.2 miRNA MIR486-1 3 +58055 chr8 HAVANA gene 41660991 41665566 1374.0 + 0 ENSG00000253389.2 antisense AC113133.1 1 OTTHUMG00000164084.2 +58056 chr8 ENSEMBL gene 41803349 41803450 102.0 + 0 ENSG00000207101.1 misc_RNA RF00019 3 +58057 chr8 HAVANA gene 41828165 41829934 1770.0 - 0 ENSG00000260588.1 lincRNA AC027702.1 2 OTTHUMG00000164085.2 overlapping_locus +58058 chr8 ENSEMBL gene 41840059 41840339 281.0 - 0 ENSG00000241834.3 misc_RNA RN7SL149P 3 +58059 chr8 HAVANA gene 41653220 41896762 10799.0 - 0 ENSG00000029534.20 protein_coding ANK1 1 OTTHUMG00000150281.8 ncRNA_host,overlapping_locus +58060 chr8 ENSEMBL gene 42043504 42043575 72.0 - 0 ENSG00000238966.1 snoRNA RF01169 3 +58061 chr8 HAVANA gene 41929479 42052026 24175.0 - 0 ENSG00000083168.10 protein_coding KAT6A 1 OTTHUMG00000150453.5 ncRNA_host +58062 chr8 HAVANA gene 42101318 42101836 519.0 + 0 ENSG00000244235.2 processed_pseudogene AC103724.1 1 OTTHUMG00000158608.2 pseudo_consens +58063 chr8 HAVANA gene 42128774 42129249 476.0 - 0 ENSG00000253135.1 processed_pseudogene AC103724.2 1 OTTHUMG00000164059.1 pseudo_consens +58064 chr8 HAVANA gene 42139461 42139752 292.0 - 0 ENSG00000271938.1 lincRNA AC103724.4 2 OTTHUMG00000185448.1 +58065 chr8 HAVANA gene 42151772 42152763 992.0 - 0 ENSG00000261449.1 antisense AC103724.3 2 OTTHUMG00000173375.1 +58066 chr8 HAVANA gene 42152946 42171673 6276.0 + 0 ENSG00000070718.11 protein_coding AP3M2 1 OTTHUMG00000164060.5 +58067 chr8 HAVANA gene 42175233 42207724 6618.0 - 0 ENSG00000104368.17 protein_coding PLAT 1 OTTHUMG00000164072.2 +58068 chr8 HAVANA gene 42233675 42271197 1762.0 - 0 ENSG00000253408.5 antisense AC083973.1 2 OTTHUMG00000164073.1 +58069 chr8 HAVANA gene 42271302 42332653 10239.0 + 0 ENSG00000104365.14 protein_coding IKBKB 2 OTTHUMG00000164092.7 +58070 chr8 HAVANA gene 42341767 42342634 868.0 - 0 ENSG00000240395.1 processed_pseudogene RPL5P23 1 OTTHUMG00000158609.1 pseudo_consens +58071 chr8 HAVANA gene 42338454 42371808 4106.0 + 0 ENSG00000070501.11 protein_coding POLB 1 OTTHUMG00000164093.5 +58072 chr8 HAVANA gene 42374068 42377232 894.0 - 0 ENSG00000104371.4 protein_coding DKK4 2 OTTHUMG00000164167.1 +58073 chr8 HAVANA gene 42391624 42405897 3141.0 + 0 ENSG00000078668.13 protein_coding VDAC3 1 OTTHUMG00000164168.3 +58074 chr8 HAVANA gene 42484600 42485019 420.0 + 0 ENSG00000254131.1 processed_pseudogene AC093367.1 2 OTTHUMG00000164170.1 +58075 chr8 HAVANA gene 42537529 42538304 708.0 - 0 ENSG00000254165.1 antisense AC090739.1 2 OTTHUMG00000164171.1 overlapping_locus +58076 chr8 HAVANA gene 42416475 42541926 6641.0 - 0 ENSG00000168575.9 protein_coding SLC20A2 2 OTTHUMG00000164169.3 overlapping_locus +58077 chr8 HAVANA gene 42541155 42555193 4056.0 + 0 ENSG00000176209.11 protein_coding SMIM19 2 OTTHUMG00000157060.6 +58078 chr8 HAVANA gene 42705583 42721946 682.0 - 0 ENSG00000255101.1 antisense AC103843.1 1 OTTHUMG00000165273.1 +58079 chr8 HAVANA gene 42725547 42726228 682.0 - 0 ENSG00000255361.1 processed_pseudogene AC103843.2 1 OTTHUMG00000165274.2 pseudo_consens +58080 chr8 HAVANA gene 42697376 42737407 2587.0 + 0 ENSG00000147432.6 protein_coding CHRNB3 1 OTTHUMG00000165262.4 +58081 chr8 HAVANA gene 42752620 42796392 2596.0 - 0 ENSG00000147434.8 protein_coding CHRNA6 1 OTTHUMG00000165275.2 +58082 chr8 HAVANA gene 42836674 42843325 2462.0 - 0 ENSG00000131931.8 protein_coding THAP1 2 OTTHUMG00000165276.2 +58083 chr8 ENSEMBL gene 42881236 42881517 282.0 + 0 ENSG00000242719.3 misc_RNA RN7SL806P 3 +58084 chr8 ENSEMBL gene 42896197 42896275 79.0 - 0 ENSG00000284062.1 miRNA MIR4469 3 +58085 chr8 HAVANA gene 42849637 42897290 6055.0 - 0 ENSG00000120925.15 protein_coding RNF170 2 OTTHUMG00000165277.2 ncRNA_host +58086 chr8 ENSEMBL gene 42949388 42949495 108.0 - 0 ENSG00000202514.1 misc_RNA RF00019 3 +58087 chr8 HAVANA gene 42896932 43030539 15250.0 + 0 ENSG00000168172.8 protein_coding HOOK3 1 OTTHUMG00000165278.4 overlapping_locus +58088 chr8 ENSEMBL gene 43073474 43073618 145.0 + 0 ENSG00000200731.1 snRNA RNU1-124P 3 +58089 chr8 HAVANA gene 43018424 43077334 623.0 + 0 ENSG00000254673.1 protein_coding AC110275.1 2 OTTHUMG00000165287.2 ncRNA_host,overlapping_locus +58090 chr8 HAVANA gene 43034194 43085788 9551.0 + 0 ENSG00000168522.12 protein_coding FNTA 1 OTTHUMG00000165279.4 ncRNA_host,overlapping_locus +58091 chr8 HAVANA gene 43093506 43123434 1877.0 + 0 ENSG00000185900.9 protein_coding POMK 1 OTTHUMG00000164100.3 +58092 chr8 HAVANA gene 43125995 43126397 403.0 - 0 ENSG00000254198.1 processed_pseudogene AC113191.1 1 OTTHUMG00000164101.1 pseudo_consens +58093 chr8 HAVANA gene 43140455 43202855 8943.0 + 0 ENSG00000165102.14 protein_coding HGSNAT 1 OTTHUMG00000164102.2 +58094 chr8 HAVANA gene 43219960 43220809 850.0 - 0 ENSG00000253611.1 processed_pseudogene VN1R46P 2 OTTHUMG00000164103.1 +58095 chr8 HAVANA gene 43246755 43246935 181.0 - 0 ENSG00000253884.1 processed_pseudogene AC022616.5 2 OTTHUMG00000164104.1 +58096 chr8 HAVANA gene 43247191 43247410 220.0 + 0 ENSG00000255166.1 processed_pseudogene AC022616.7 2 OTTHUMG00000165528.1 +58097 chr8 HAVANA gene 43251711 43251858 148.0 + 0 ENSG00000253312.1 processed_pseudogene AC022616.3 2 OTTHUMG00000164105.1 +58098 chr8 HAVANA gene 43253732 43254089 300.0 + 0 ENSG00000253186.2 unprocessed_pseudogene AC022616.2 2 OTTHUMG00000164106.2 +58099 chr8 HAVANA gene 43270198 43271960 1763.0 - 0 ENSG00000253606.2 processed_pseudogene AFG3L2P1 1 OTTHUMG00000164107.2 pseudo_consens +58100 chr8 HAVANA gene 43276270 43276823 554.0 - 0 ENSG00000234713.3 processed_pseudogene AC022616.1 1 OTTHUMG00000164109.1 pseudo_consens +58101 chr8 HAVANA gene 43284626 43284806 181.0 - 0 ENSG00000253707.1 processed_pseudogene AC022616.4 2 OTTHUMG00000164110.1 +58102 chr8 ENSEMBL gene 43303376 43303482 107.0 + 0 ENSG00000238509.1 snRNA RNU6-104P 3 +58103 chr8 HAVANA gene 43313948 43314200 253.0 + 0 ENSG00000255497.1 processed_pseudogene AC022616.8 2 OTTHUMG00000165529.1 overlapping_locus +58104 chr8 HAVANA gene 43292483 43363518 2268.0 + 0 ENSG00000188877.12 polymorphic_pseudogene POTEA 2 OTTHUMG00000164111.4 overlapping_locus +58105 chr8 HAVANA gene 43372559 43372677 119.0 + 0 ENSG00000254342.1 processed_pseudogene AC022616.6 2 OTTHUMG00000164112.1 +58106 chr8 ENSEMBL gene 43378297 43378510 214.0 + 0 ENSG00000201329.2 snoRNA RF00012 3 +58107 chr8 HAVANA gene 43442902 43452912 643.0 + 0 ENSG00000250637.2 unprocessed_pseudogene AC134698.1 2 OTTHUMG00000160408.2 +58108 chr8 HAVANA gene 43493937 43494762 826.0 + 0 ENSG00000254069.2 processed_pseudogene AC134698.4 2 OTTHUMG00000164113.2 +58109 chr8 HAVANA gene 43511820 43512033 214.0 - 0 ENSG00000253319.1 processed_pseudogene AC134698.3 2 OTTHUMG00000164114.1 +58110 chr8 HAVANA gene 43513643 43514421 779.0 + 0 ENSG00000253418.1 processed_pseudogene SNX18P27 1 OTTHUMG00000164115.1 pseudo_consens +58111 chr8 HAVANA gene 43539137 43539472 336.0 + 0 ENSG00000254145.1 processed_pseudogene AC134698.5 2 OTTHUMG00000164116.1 +58112 chr8 HAVANA gene 43539973 43540927 412.0 + 0 ENSG00000253748.2 unprocessed_pseudogene CYP4F44P 2 OTTHUMG00000164117.2 +58113 chr8 HAVANA gene 43542076 43544057 311.0 + 0 ENSG00000253195.2 unprocessed_pseudogene AC134698.2 2 OTTHUMG00000164118.2 +58114 chr8 HAVANA gene 43672823 43673075 253.0 + 0 ENSG00000253845.1 processed_pseudogene AC139365.2 2 OTTHUMG00000164119.1 +58115 chr8 HAVANA gene 43674270 43674591 322.0 - 0 ENSG00000253198.1 processed_pseudogene AC139365.1 1 OTTHUMG00000164120.1 pseudo_consens +58116 chr8 ENSEMBL gene 46028804 46028892 89.0 - 0 ENSG00000276685.1 misc_RNA RF01518 3 +58117 chr8 HAVANA gene 46549089 46550802 472.0 + 0 ENSG00000253425.2 unprocessed_pseudogene HSPA8P13 1 OTTHUMG00000164121.2 pseudo_consens +58118 chr8 HAVANA gene 46579213 46638886 2835.0 - 0 ENSG00000248498.4 transcribed_unprocessed_pseudogene ASNSP1 2 OTTHUMG00000165535.2 +58119 chr8 HAVANA gene 46671839 46671926 88.0 + 0 ENSG00000254070.1 processed_pseudogene AC104576.1 2 OTTHUMG00000164335.1 +58120 chr8 HAVANA gene 46697630 46698688 447.0 + 0 ENSG00000251470.1 unprocessed_pseudogene ASNSP4 2 OTTHUMG00000160508.1 +58121 chr8 HAVANA gene 46784800 46785928 1129.0 + 0 ENSG00000228984.3 processed_pseudogene AC021451.1 2 OTTHUMG00000164129.1 +58122 chr8 HAVANA gene 46792065 46793064 712.0 + 0 ENSG00000250857.3 processed_pseudogene TRIM60P15 2 OTTHUMG00000160410.3 +58123 chr8 HAVANA gene 46827228 46827894 667.0 - 0 ENSG00000253828.3 unprocessed_pseudogene MTND2P38 2 OTTHUMG00000164131.3 +58124 chr8 HAVANA gene 46828117 46828413 297.0 - 0 ENSG00000282321.1 unprocessed_pseudogene MTND1P7 2 OTTHUMG00000191367.1 +58125 chr8 ENSEMBL gene 46831050 46831156 107.0 + 0 ENSG00000252594.1 snRNA RNU6-656P 3 +58126 chr8 HAVANA gene 46837578 46838706 1129.0 - 0 ENSG00000254118.1 processed_pseudogene MTCYBP20 2 OTTHUMG00000164133.1 +58127 chr8 HAVANA gene 46838788 46839205 418.0 + 0 ENSG00000254156.1 transcribed_processed_pseudogene MTND6P20 2 OTTHUMG00000164134.1 overlapping_locus +58128 chr8 HAVANA gene 46822237 46854307 1914.0 + 0 ENSG00000253314.5 lincRNA LINC00293 2 OTTHUMG00000164130.2 ncRNA_host,overlapping_locus +58129 chr8 HAVANA gene 46870902 46872045 1144.0 - 0 ENSG00000253803.1 processed_pseudogene AC091163.3 2 OTTHUMG00000164135.1 +58130 chr8 HAVANA gene 46922561 46928832 605.0 + 0 ENSG00000253745.1 lincRNA AC091163.1 2 OTTHUMG00000164136.1 +58131 chr8 HAVANA gene 46930840 46934446 460.0 - 0 ENSG00000253782.1 lincRNA AC091163.2 1 OTTHUMG00000164137.1 +58132 chr8 HAVANA gene 46972476 46974617 2142.0 - 0 ENSG00000215179.5 processed_pseudogene MAPK6P4 1 OTTHUMG00000164138.2 pseudo_consens +58133 chr8 ENSEMBL gene 47068021 47068323 303.0 - 0 ENSG00000222099.1 misc_RNA RN7SKP32 3 +58134 chr8 ENSEMBL gene 47131781 47131887 107.0 - 0 ENSG00000200986.1 snRNA RNU6-819P 3 +58135 chr8 HAVANA gene 47129262 47132628 956.0 + 0 ENSG00000285992.1 lincRNA AC120036.5 2 OTTHUMG00000193052.1 +58136 chr8 HAVANA gene 47157118 47157771 654.0 + 0 ENSG00000188873.4 processed_pseudogene RPL10AP2 1 OTTHUMG00000158610.1 pseudo_consens +58137 chr8 HAVANA gene 47164870 47165524 343.0 + 0 ENSG00000248531.3 unprocessed_pseudogene NDUFA5P12 1 OTTHUMG00000160522.3 pseudo_consens +58138 chr8 HAVANA gene 47189305 47189560 256.0 + 0 ENSG00000254348.1 processed_pseudogene AC120036.3 2 OTTHUMG00000164146.1 +58139 chr8 HAVANA gene 47190772 47193262 2491.0 + 0 ENSG00000255366.1 lincRNA AC120036.4 2 OTTHUMG00000164145.2 +58140 chr8 HAVANA gene 47194002 47194347 346.0 - 0 ENSG00000253502.1 processed_pseudogene ATP6V1G1P2 1 OTTHUMG00000164147.1 pseudo_consens,overlapping_locus +58141 chr8 HAVANA gene 47198032 47198323 292.0 - 0 ENSG00000253817.1 processed_pseudogene AC120036.2 2 OTTHUMG00000164148.1 overlapping_locus +58142 chr8 HAVANA gene 47089572 47198861 1474.0 - 0 ENSG00000248347.3 unprocessed_pseudogene AC120036.1 1 OTTHUMG00000160446.3 pseudo_consens,overlapping_locus +58143 chr8 HAVANA gene 47202444 47202897 352.0 - 0 ENSG00000215177.3 IG_V_pseudogene IGLV8OR8-1 2 OTTHUMG00000164149.4 +58144 chr8 HAVANA gene 47511034 47512141 1108.0 - 0 ENSG00000253330.1 processed_pseudogene AC024451.2 1 OTTHUMG00000164177.1 pseudo_consens +58145 chr8 HAVANA gene 47527397 47528148 752.0 + 0 ENSG00000269924.1 sense_intronic AC024451.4 2 OTTHUMG00000183975.1 overlapping_locus +58146 chr8 HAVANA gene 47546804 47547926 779.0 - 0 ENSG00000251354.3 unprocessed_pseudogene AC024451.1 1 OTTHUMG00000160450.3 pseudo_consens +58147 chr8 HAVANA gene 47592147 47592609 463.0 - 0 ENSG00000254065.1 processed_pseudogene AC024451.3 1 OTTHUMG00000164178.1 pseudo_consens +58148 chr8 ENSEMBL gene 47667771 47667877 107.0 + 0 ENSG00000207369.1 snRNA RNU6-665P 3 +58149 chr8 HAVANA gene 47260575 47736306 7477.0 + 0 ENSG00000164808.16 protein_coding SPIDR 1 OTTHUMG00000164176.6 ncRNA_host,overlapping_locus +58150 chr8 HAVANA gene 47736909 47739086 2178.0 - 0 ENSG00000221869.4 protein_coding CEBPD 2 OTTHUMG00000162290.2 +58151 chr8 ENSEMBL gene 47805079 47805179 101.0 - 0 ENSG00000207450.1 misc_RNA RF00019 3 +58152 chr8 HAVANA gene 47773108 47960183 15417.0 - 0 ENSG00000253729.7 protein_coding PRKDC 1 OTTHUMG00000164239.6 ncRNA_host +58153 chr8 HAVANA gene 47960185 47978160 6824.0 + 0 ENSG00000104738.17 protein_coding MCM4 1 OTTHUMG00000164205.7 +58154 chr8 ENSEMBL gene 47979414 47979521 108.0 + 0 ENSG00000222522.1 snRNA RNU6-519P 3 +58155 chr8 HAVANA gene 48008400 48064708 6606.0 + 0 ENSG00000169139.11 protein_coding UBE2V2 1 OTTHUMG00000164206.5 +58156 chr8 HAVANA gene 48193850 48194627 778.0 - 0 ENSG00000253843.1 processed_pseudogene AC104989.1 1 OTTHUMG00000164241.1 pseudo_consens +58157 chr8 HAVANA gene 48294026 48294694 669.0 - 0 ENSG00000253654.2 processed_pseudogene AC105029.1 1 OTTHUMG00000164242.2 pseudo_consens +58158 chr8 ENSEMBL gene 48307927 48308030 104.0 - 0 ENSG00000252710.1 snRNA RNU6-295P 3 +58159 chr8 ENSEMBL gene 48316669 48316770 102.0 + 0 ENSG00000277418.1 rRNA RNA5SP531 3 +58160 chr8 HAVANA gene 48384590 48385049 460.0 + 0 ENSG00000224594.2 processed_pseudogene RPL29P19 1 OTTHUMG00000155292.2 pseudo_consens +58161 chr8 HAVANA gene 48428143 48431041 2899.0 - 0 ENSG00000279881.1 TEC AC041040.1 2 OTTHUMG00000173473.1 +58162 chr8 HAVANA gene 48515852 48517089 537.0 - 0 ENSG00000253140.1 lincRNA AC026904.1 2 OTTHUMG00000164197.1 +58163 chr8 HAVANA gene 48551527 48556441 1579.0 - 0 ENSG00000253688.2 lincRNA AC026904.2 1 OTTHUMG00000164199.2 +58164 chr8 HAVANA gene 48590401 48594621 3549.0 + 0 ENSG00000233858.4 lincRNA LINC02599 2 OTTHUMG00000141277.1 overlapping_locus +58165 chr8 HAVANA gene 48597458 48621018 559.0 - 0 ENSG00000253702.1 lincRNA AC026904.3 2 OTTHUMG00000164200.1 +58166 chr8 HAVANA gene 48620465 48623895 289.0 + 0 ENSG00000253455.1 lincRNA AC022915.1 1 OTTHUMG00000164201.1 overlapping_locus +58167 chr8 HAVANA gene 48657260 48658894 594.0 - 0 ENSG00000253892.1 lincRNA AC022915.3 1 OTTHUMG00000164202.1 +58168 chr8 HAVANA gene 48551567 48698510 2372.0 + 0 ENSG00000253608.1 antisense AC022915.2 2 OTTHUMG00000164198.1 overlapping_locus +58169 chr8 HAVANA gene 48710789 48735311 5805.0 - 0 ENSG00000034239.10 protein_coding EFCAB1 2 OTTHUMG00000164203.3 +58170 chr8 HAVANA gene 48913916 48914380 465.0 + 0 ENSG00000233109.4 processed_pseudogene AC013701.1 1 OTTHUMG00000164215.1 pseudo_consens +58171 chr8 HAVANA gene 48917604 48921740 3392.0 - 0 ENSG00000019549.11 protein_coding SNAI2 2 OTTHUMG00000149912.7 +58172 chr8 HAVANA gene 49054311 49076090 2059.0 + 0 ENSG00000168333.13 protein_coding PPDPFL 2 OTTHUMG00000164217.2 +58173 chr8 HAVANA gene 49168539 49228925 922.0 + 0 ENSG00000253474.1 lincRNA AC022568.1 1 OTTHUMG00000164208.1 +58174 chr8 ENSEMBL gene 49330210 49330547 338.0 + 0 ENSG00000199640.1 misc_RNA RN7SKP294 3 +58175 chr8 HAVANA gene 49352630 49352844 215.0 - 0 ENSG00000254268.1 processed_pseudogene RFPL4AP7 2 OTTHUMG00000164209.1 +58176 chr8 HAVANA gene 49496763 49512180 267.0 - 0 ENSG00000253380.1 lincRNA AC090155.2 2 OTTHUMG00000164210.1 +58177 chr8 HAVANA gene 49536386 49554414 407.0 - 0 ENSG00000253206.1 lincRNA AC090155.1 1 OTTHUMG00000164211.1 +58178 chr8 HAVANA gene 49740216 49741321 1106.0 - 0 ENSG00000253810.1 processed_pseudogene PSAT1P1 1 OTTHUMG00000164212.1 pseudo_consens +58179 chr8 HAVANA gene 49817586 49820944 412.0 - 0 ENSG00000253484.1 lincRNA AC113145.1 1 OTTHUMG00000164213.1 +58180 chr8 HAVANA gene 49906863 49907446 584.0 - 0 ENSG00000271148.1 lincRNA AC023762.1 2 OTTHUMG00000184920.1 +58181 chr8 HAVANA gene 50381015 50382275 434.0 + 0 ENSG00000253849.1 sense_intronic AC090539.1 2 OTTHUMG00000164258.1 overlapping_locus +58182 chr8 HAVANA gene 50490795 50491465 671.0 + 0 ENSG00000254392.1 processed_pseudogene AC090539.2 1 OTTHUMG00000164259.1 pseudo_consens,overlapping_locus +58183 chr8 HAVANA gene 50762460 50762798 339.0 - 0 ENSG00000254358.1 processed_pseudogene CYCSP22 1 OTTHUMG00000164260.1 pseudo_consens +58184 chr8 HAVANA gene 49909789 50796691 10599.0 + 0 ENSG00000147481.15 protein_coding SNTG1 2 OTTHUMG00000164257.16 overlapping_locus +58185 chr8 HAVANA gene 50859530 50860062 533.0 + 0 ENSG00000253340.1 processed_pseudogene AC087272.1 1 OTTHUMG00000164261.2 pseudo_consens +58186 chr8 ENSEMBL gene 51015021 51015165 145.0 + 0 ENSG00000201316.1 snoRNA RF00409 3 +58187 chr8 HAVANA gene 51257688 51321118 519.0 + 0 ENSG00000253664.1 antisense AC012413.1 2 OTTHUMG00000164243.1 +58188 chr8 HAVANA gene 51435602 51436509 908.0 + 0 ENSG00000254025.1 processed_pseudogene BRIX1P1 1 OTTHUMG00000164863.1 pseudo_consens +58189 chr8 HAVANA gene 51721670 51722164 495.0 - 0 ENSG00000254225.1 processed_pseudogene BTF3P1 1 OTTHUMG00000164245.1 pseudo_consens,overlapping_locus +58190 chr8 HAVANA gene 51319578 51809445 5238.0 - 0 ENSG00000147485.12 protein_coding PXDNL 2 OTTHUMG00000164244.1 overlapping_locus +58191 chr8 HAVANA gene 51810110 51810681 572.0 - 0 ENSG00000272076.1 lincRNA AC090186.1 2 OTTHUMG00000185455.1 +58192 chr8 HAVANA gene 51895957 51896374 283.0 - 0 ENSG00000253475.1 sense_intronic AC103769.1 2 OTTHUMG00000164254.1 overlapping_locus +58193 chr8 HAVANA gene 51817575 51899186 7323.0 - 0 ENSG00000168300.13 protein_coding PCMTD1 1 OTTHUMG00000164246.2 overlapping_locus +58194 chr8 HAVANA gene 51899325 51947173 2055.0 + 0 ENSG00000228801.5 antisense AC064807.1 2 OTTHUMG00000164247.2 +58195 chr8 HAVANA gene 51950284 51950690 407.0 + 0 ENSG00000272024.1 lincRNA AC064807.4 2 OTTHUMG00000185456.1 +58196 chr8 HAVANA gene 51996210 52008355 470.0 - 0 ENSG00000254136.1 lincRNA AC064807.3 2 OTTHUMG00000164267.1 +58197 chr8 HAVANA gene 51961458 52022974 672.0 + 0 ENSG00000253844.1 lincRNA AC064807.2 2 OTTHUMG00000164266.1 +58198 chr8 HAVANA gene 52150820 52154892 635.0 + 0 ENSG00000254314.1 antisense AC021915.2 1 OTTHUMG00000164250.1 +58199 chr8 HAVANA gene 52194362 52199580 824.0 + 0 ENSG00000253551.1 antisense AC021915.1 2 OTTHUMG00000164251.1 +58200 chr8 HAVANA gene 52294455 52301942 422.0 + 0 ENSG00000253924.1 lincRNA AC103831.1 1 OTTHUMG00000164252.1 +58201 chr8 HAVANA gene 52313154 52313500 347.0 - 0 ENSG00000240534.1 processed_pseudogene RPL34P17 1 OTTHUMG00000158611.2 pseudo_consens,overlapping_locus +58202 chr8 HAVANA gene 52110839 52460959 14396.0 - 0 ENSG00000147488.11 protein_coding ST18 1 OTTHUMG00000164233.3 overlapping_locus +58203 chr8 HAVANA gene 52534037 52565507 1217.0 - 0 ENSG00000196711.8 protein_coding ALKAL1 2 OTTHUMG00000164256.1 +58204 chr8 HAVANA gene 52722903 52723141 239.0 + 0 ENSG00000271555.1 sense_intronic AC113139.1 2 OTTHUMG00000185152.1 +58205 chr8 HAVANA gene 52622456 52745843 7615.0 - 0 ENSG00000023287.12 protein_coding RB1CC1 2 OTTHUMG00000164268.6 +58206 chr8 HAVANA gene 52938431 52941117 2687.0 + 0 ENSG00000183729.3 protein_coding NPBWR1 2 OTTHUMG00000164275.1 retrogene +58207 chr8 HAVANA gene 52975111 52976116 1006.0 - 0 ENSG00000248911.2 processed_pseudogene AC009800.1 1 OTTHUMG00000160451.2 pseudo_consens +58208 chr8 HAVANA gene 53162339 53162987 318.0 + 0 ENSG00000250494.1 processed_pseudogene AC009646.1 1 OTTHUMG00000160418.1 pseudo_consens +58209 chr8 HAVANA gene 53177571 53242683 842.0 + 0 ENSG00000254687.1 antisense AC009646.2 2 OTTHUMG00000165220.1 +58210 chr8 HAVANA gene 53225716 53251697 5738.0 - 0 ENSG00000082556.10 protein_coding OPRK1 1 OTTHUMG00000164276.1 +58211 chr8 HAVANA gene 53388701 53390872 2172.0 - 0 ENSG00000260484.1 lincRNA AC131902.2 2 OTTHUMG00000174462.1 +58212 chr8 HAVANA gene 53394215 53394795 581.0 + 0 ENSG00000274295.1 processed_pseudogene AC131902.3 1 OTTHUMG00000187714.1 pseudo_consens +58213 chr8 HAVANA gene 53395211 53395946 594.0 - 0 ENSG00000253369.1 lincRNA AC131902.1 2 OTTHUMG00000164263.1 +58214 chr8 HAVANA gene 53515170 53515905 469.0 + 0 ENSG00000254204.1 lincRNA AC022034.3 2 OTTHUMG00000164229.1 +58215 chr8 HAVANA gene 53515171 53523931 2387.0 - 0 ENSG00000237807.3 lincRNA AC022034.1 2 OTTHUMG00000164264.1 +58216 chr8 HAVANA gene 53532908 53533704 478.0 + 0 ENSG00000240919.1 processed_pseudogene AC022034.2 1 OTTHUMG00000158612.1 pseudo_consens +58217 chr8 HAVANA gene 53537060 53540300 2156.0 + 0 ENSG00000206144.5 processed_pseudogene MAPK6P1 1 OTTHUMG00000160523.2 pseudo_consens +58218 chr8 HAVANA gene 53712697 53712896 200.0 + 0 ENSG00000253668.1 processed_pseudogene AC103778.1 1 OTTHUMG00000164230.1 pseudo_consens +58219 chr8 HAVANA gene 53715557 53843558 5090.0 - 0 ENSG00000047249.17 protein_coding ATP6V1H 1 OTTHUMG00000164231.7 +58220 chr8 HAVANA gene 53876150 53876649 500.0 - 0 ENSG00000272457.1 antisense AC113194.1 2 OTTHUMG00000185457.1 +58221 chr8 HAVANA gene 53887008 53887244 237.0 - 0 ENSG00000244159.1 processed_pseudogene RPS27AP13 1 OTTHUMG00000158613.1 pseudo_consens +58222 chr8 ENSEMBL gene 53914719 53914824 106.0 + 0 ENSG00000200528.1 snRNA RNU6-1331P 3 +58223 chr8 HAVANA gene 53851808 53959303 3192.0 + 0 ENSG00000147509.13 protein_coding RGS20 2 OTTHUMG00000164750.2 ncRNA_host +58224 chr8 HAVANA gene 53971231 53974210 2479.0 + 0 ENSG00000253667.2 processed_pseudogene AC100821.1 1 OTTHUMG00000164312.2 pseudo_consens +58225 chr8 HAVANA gene 53966552 54022529 4415.0 - 0 ENSG00000187735.13 protein_coding TCEA1 2 OTTHUMG00000164262.2 +58226 chr8 HAVANA gene 54042989 54045629 440.0 - 0 ENSG00000260955.2 lincRNA AC100821.2 2 OTTHUMG00000172758.2 +58227 chr8 HAVANA gene 54073114 54073566 453.0 + 0 ENSG00000254274.1 processed_pseudogene TDGF1P5 1 OTTHUMG00000164314.2 pseudo_consens +58228 chr8 HAVANA gene 54046367 54102017 4694.0 - 0 ENSG00000120992.17 protein_coding LYPLA1 2 OTTHUMG00000164313.5 +58229 chr8 ENSEMBL gene 54130582 54130860 279.0 + 0 ENSG00000276353.1 misc_RNA RF00017 3 +58230 chr8 HAVANA gene 54135210 54147901 1191.0 + 0 ENSG00000137547.8 protein_coding MRPL15 2 OTTHUMG00000164315.4 +58231 chr8 ENSEMBL gene 54152807 54152882 76.0 - 0 ENSG00000251835.1 snRNA RNU6ATAC32P 3 +58232 chr8 HAVANA gene 54191582 54192035 454.0 - 0 ENSG00000270980.1 processed_pseudogene AC060764.1 1 OTTHUMG00000184843.1 pseudo_consens +58233 chr8 HAVANA gene 54247633 54247906 274.0 + 0 ENSG00000253840.1 processed_pseudogene AC044836.1 1 OTTHUMG00000164376.1 pseudo_consens +58234 chr8 ENSEMBL gene 54330687 54330895 209.0 + 0 ENSG00000199212.1 snoRNA RNU105C 3 +58235 chr8 HAVANA gene 54354168 54355118 951.0 + 0 ENSG00000276605.1 processed_pseudogene AC027250.1 1 OTTHUMG00000187718.1 pseudo_consens +58236 chr8 ENSEMBL gene 54420468 54420725 258.0 + 0 ENSG00000244107.3 misc_RNA RN7SL250P 3 +58237 chr8 HAVANA gene 54457935 54460888 2342.0 + 0 ENSG00000164736.5 protein_coding SOX17 2 OTTHUMG00000164377.2 +58238 chr8 HAVANA gene 54467208 54470609 619.0 + 0 ENSG00000274310.1 unprocessed_pseudogene AC091076.1 2 OTTHUMG00000187722.1 +58239 chr8 HAVANA gene 54479597 54479963 367.0 - 0 ENSG00000270275.1 processed_pseudogene TRMT112P7 1 OTTHUMG00000184845.1 pseudo_consens +58240 chr8 HAVANA gene 54522799 54523297 499.0 - 0 ENSG00000226098.4 processed_pseudogene SEC11B 1 OTTHUMG00000164378.1 pseudo_consens +58241 chr8 HAVANA gene 54696398 54697127 730.0 + 0 ENSG00000253114.2 processed_pseudogene AC090151.1 1 OTTHUMG00000164380.3 pseudo_consens,overlapping_locus +58242 chr8 HAVANA gene 54509422 54871720 15273.0 + 0 ENSG00000104237.9 protein_coding RP1 2 OTTHUMG00000164379.7 +58243 chr8 HAVANA gene 55135203 55142358 813.0 - 0 ENSG00000253976.1 lincRNA AC022679.2 1 OTTHUMG00000164289.1 +58244 chr8 HAVANA gene 55161483 55164727 772.0 + 0 ENSG00000253857.1 lincRNA AC022679.1 1 OTTHUMG00000164290.1 overlapping_locus +58245 chr8 HAVANA gene 55449509 55455139 5631.0 - 0 ENSG00000248522.1 processed_pseudogene SBF1P1 1 OTTHUMG00000160453.2 pseudo_consens +58246 chr8 HAVANA gene 55517240 55520977 590.0 - 0 ENSG00000254357.1 antisense AC090200.1 2 OTTHUMG00000164291.1 +58247 chr8 HAVANA gene 55102389 55542054 19885.0 + 0 ENSG00000206579.8 protein_coding XKR4 2 OTTHUMG00000164288.2 overlapping_locus +58248 chr8 ENSEMBL gene 55745232 55745342 111.0 + 0 ENSG00000222955.1 rRNA_pseudogene RNA5SP265 3 +58249 chr8 HAVANA gene 55696424 55773407 8574.0 - 0 ENSG00000167904.14 protein_coding TMEM68 1 OTTHUMG00000164293.4 +58250 chr8 HAVANA gene 55773142 55825448 3869.0 + 0 ENSG00000137574.10 protein_coding TGS1 2 OTTHUMG00000164294.1 +58251 chr8 HAVANA gene 55893595 55895739 673.0 + 0 ENSG00000254325.2 sense_intronic AC018607.1 2 OTTHUMG00000164295.2 overlapping_locus +58252 chr8 ENSEMBL gene 55902723 55902855 133.0 - 0 ENSG00000199405.1 snoRNA SNORA1B 3 +58253 chr8 ENSEMBL gene 55980240 55980540 301.0 - 0 ENSG00000240905.3 misc_RNA RN7SL798P 3 +58254 chr8 HAVANA gene 55879813 56014168 6185.0 + 0 ENSG00000254087.7 protein_coding LYN 2 OTTHUMG00000044345.5 overlapping_locus +58255 chr8 ENSEMBL gene 56022019 56022313 295.0 - 0 ENSG00000241997.3 misc_RNA RN7SL323P 3 +58256 chr8 HAVANA gene 56050038 56051207 1170.0 - 0 ENSG00000236814.1 processed_pseudogene AC046176.1 2 OTTHUMG00000164296.1 +58257 chr8 ENSEMBL gene 56073835 56073901 67.0 - 0 ENSG00000238650.1 snoRNA SNORD54 3 +58258 chr8 HAVANA gene 56067295 56074581 3002.0 - 0 ENSG00000008988.9 protein_coding RPS20 1 OTTHUMG00000164297.1 ncRNA_host +58259 chr8 HAVANA gene 56074592 56075274 557.0 + 0 ENSG00000253603.1 antisense CERNA3 2 OTTHUMG00000164298.1 +58260 chr8 HAVANA gene 56101199 56102267 762.0 - 0 ENSG00000248578.1 processed_pseudogene NPM1P21 1 OTTHUMG00000160268.1 pseudo_consens +58261 chr8 HAVANA gene 56112942 56113982 1041.0 - 0 ENSG00000172680.1 protein_coding MOS 2 OTTHUMG00000164299.2 +58262 chr8 ENSEMBL gene 56121242 56121352 111.0 - 0 ENSG00000221093.1 snoRNA RF00334 3 +58263 chr8 HAVANA gene 56160904 56211324 7833.0 - 0 ENSG00000181690.7 protein_coding PLAG1 2 OTTHUMG00000164310.2 +58264 chr8 HAVANA gene 56211686 56218798 5866.0 + 0 ENSG00000170791.17 protein_coding CHCHD7 2 OTTHUMG00000074081.4 +58265 chr8 HAVANA gene 56222688 56223173 486.0 + 0 ENSG00000272343.1 lincRNA AC107952.2 2 OTTHUMG00000185466.1 +58266 chr8 HAVANA gene 56252960 56253372 376.0 - 0 ENSG00000254216.1 processed_pseudogene AC107952.1 1 OTTHUMG00000164407.1 pseudo_consens +58267 chr8 HAVANA gene 56300010 56320776 3279.0 - 0 ENSG00000170786.12 protein_coding SDR16C5 1 OTTHUMG00000164311.1 +58268 chr8 HAVANA gene 56373064 56395365 1086.0 - 0 ENSG00000253542.7 transcribed_unitary_pseudogene SDR16C6P 2 OTTHUMG00000164408.4 +58269 chr8 HAVANA gene 56436674 56446734 3455.0 - 0 ENSG00000181195.10 protein_coding PENK 1 OTTHUMG00000164409.2 +58270 chr8 HAVANA gene 56476826 56477987 1162.0 - 0 ENSG00000253541.1 processed_pseudogene SEPT10P1 1 OTTHUMG00000164411.1 pseudo_consens +58271 chr8 HAVANA gene 56536758 56540497 861.0 - 0 ENSG00000253139.1 lincRNA AC013644.1 2 OTTHUMG00000164413.1 overlapping_locus +58272 chr8 HAVANA gene 56445807 56552067 3078.0 + 0 ENSG00000254254.5 antisense AC012349.1 2 OTTHUMG00000164410.1 +58273 chr8 HAVANA gene 56496246 56559823 2840.0 - 0 ENSG00000246430.6 lincRNA LINC00968 2 OTTHUMG00000164412.1 overlapping_locus +58274 chr8 HAVANA gene 56588385 56588787 403.0 + 0 ENSG00000241431.1 transcribed_processed_pseudogene RPL37P6 1 OTTHUMG00000158614.1 pseudo_consens +58275 chr8 HAVANA gene 56639901 56656465 584.0 - 0 ENSG00000254055.1 lincRNA AC009597.1 2 OTTHUMG00000164414.1 +58276 chr8 HAVANA gene 56776283 56776874 592.0 + 0 ENSG00000270328.1 processed_pseudogene AC009597.2 1 OTTHUMG00000184698.1 pseudo_consens +58277 chr8 ENSEMBL gene 56917084 56917190 107.0 + 0 ENSG00000206975.1 snRNA RNU6-13P 3 +58278 chr8 HAVANA gene 56957933 56993844 7594.0 - 0 ENSG00000104331.8 protein_coding IMPAD1 2 OTTHUMG00000164415.1 +58279 chr8 ENSEMBL gene 57126655 57126762 108.0 - 0 ENSG00000222205.1 rRNA_pseudogene RNA5SP266 3 +58280 chr8 HAVANA gene 57142689 57240298 4218.0 + 0 ENSG00000253301.5 lincRNA LINC01606 2 OTTHUMG00000164416.1 overlapping_locus +58281 chr8 HAVANA gene 57240057 57240541 324.0 + 0 ENSG00000251142.1 processed_pseudogene AC025674.1 2 OTTHUMG00000160419.1 overlapping_locus +58282 chr8 HAVANA gene 57261226 57266613 2971.0 + 0 ENSG00000253614.1 lincRNA AC025674.2 2 OTTHUMG00000164423.1 +58283 chr8 HAVANA gene 57279543 57284731 1875.0 + 0 ENSG00000215117.5 lincRNA LINC00588 2 OTTHUMG00000164424.1 +58284 chr8 ENSEMBL gene 57289552 57289649 98.0 + 0 ENSG00000202265.1 snRNA RNU6-596P 3 +58285 chr8 HAVANA gene 57343787 57364857 1865.0 + 0 ENSG00000253871.1 lincRNA AC068075.1 2 OTTHUMG00000164271.1 +58286 chr8 HAVANA gene 57392546 57392882 337.0 + 0 ENSG00000243050.1 processed_pseudogene RPL30P10 1 OTTHUMG00000158615.2 pseudo_consens +58287 chr8 HAVANA gene 57492884 57591559 647.0 + 0 ENSG00000253821.1 lincRNA AC090796.1 2 OTTHUMG00000164272.1 +58288 chr8 HAVANA gene 57746149 57750199 2461.0 + 0 ENSG00000254139.1 lincRNA AC104051.2 2 OTTHUMG00000164274.1 +58289 chr8 HAVANA gene 57594166 57805029 570.0 - 0 ENSG00000253322.1 lincRNA AC104051.1 2 OTTHUMG00000164273.1 +58290 chr8 HAVANA gene 57889576 57890809 780.0 - 0 ENSG00000253376.1 lincRNA AC012103.1 2 OTTHUMG00000164280.1 +58291 chr8 HAVANA gene 57855500 57984126 2435.0 + 0 ENSG00000205293.4 lincRNA LINC01602 2 OTTHUMG00000164281.2 +58292 chr8 HAVANA gene 58031334 58032682 877.0 - 0 ENSG00000253523.1 lincRNA AC104350.1 1 OTTHUMG00000164283.1 +58293 chr8 HAVANA gene 58091442 58106294 625.0 - 0 ENSG00000253116.1 lincRNA AC027698.1 2 OTTHUMG00000164284.1 +58294 chr8 HAVANA gene 58113189 58113622 434.0 - 0 ENSG00000242595.1 processed_pseudogene RPL26P26 1 OTTHUMG00000158617.1 pseudo_consens +58295 chr8 HAVANA gene 57994509 58204279 4943.0 + 0 ENSG00000169122.11 protein_coding FAM110B 2 OTTHUMG00000164282.2 +58296 chr8 HAVANA gene 58255771 58272119 1725.0 - 0 ENSG00000253281.6 processed_transcript AC092819.1 2 OTTHUMG00000164285.2 +58297 chr8 HAVANA gene 58424588 58426685 1779.0 - 0 ENSG00000250031.1 processed_pseudogene AC009927.1 1 OTTHUMG00000160264.1 pseudo_consens +58298 chr8 HAVANA gene 58411264 58451501 5390.0 + 0 ENSG00000215114.8 protein_coding UBXN2B 2 OTTHUMG00000164300.1 +58299 chr8 HAVANA gene 58490178 58500236 2950.0 - 0 ENSG00000167910.3 protein_coding CYP7A1 2 OTTHUMG00000164301.1 +58300 chr8 HAVANA gene 58503588 58504068 481.0 + 0 ENSG00000254103.1 processed_pseudogene PPIAP85 1 OTTHUMG00000164302.1 pseudo_consens +58301 chr8 HAVANA gene 58552924 58582860 4778.0 + 0 ENSG00000137575.11 protein_coding SDCBP 2 OTTHUMG00000164303.2 +58302 chr8 HAVANA gene 58588420 58588764 345.0 - 0 ENSG00000242970.2 processed_pseudogene AC068522.1 2 OTTHUMG00000164304.1 overlapping_locus +58303 chr8 HAVANA gene 58583504 58659844 6165.0 - 0 ENSG00000035681.8 protein_coding NSMAF 2 OTTHUMG00000164352.5 overlapping_locus +58304 chr8 ENSEMBL gene 58814412 58814552 141.0 - 0 ENSG00000201231.1 snRNA RNU4-50P 3 +58305 chr8 HAVANA gene 58991720 58992938 551.0 - 0 ENSG00000254048.1 sense_intronic AC105150.1 2 OTTHUMG00000164332.1 overlapping_locus +58306 chr8 HAVANA gene 58805418 59119208 4131.0 - 0 ENSG00000198846.5 protein_coding TOX 2 OTTHUMG00000164331.2 ncRNA_host,overlapping_locus +58307 chr8 HAVANA gene 59119040 59121346 1743.0 + 0 ENSG00000167912.5 antisense AC090152.1 2 OTTHUMG00000164333.1 +58308 chr8 ENSEMBL gene 59137372 59137502 131.0 - 0 ENSG00000206853.1 snoRNA RF00432 3 +58309 chr8 ENSEMBL gene 59455885 59456010 126.0 + 0 ENSG00000201763.1 rRNA_pseudogene RNA5SP267 3 +58310 chr8 HAVANA gene 59557528 59557855 328.0 - 0 ENSG00000254150.1 processed_pseudogene AC087664.3 1 OTTHUMG00000164305.1 pseudo_consens +58311 chr8 HAVANA gene 59561327 59593701 358.0 - 0 ENSG00000253260.1 lincRNA AC087664.1 2 OTTHUMG00000164306.1 +58312 chr8 HAVANA gene 59601378 59613775 1017.0 + 0 ENSG00000253879.1 lincRNA AC087664.2 1 OTTHUMG00000164307.1 +58313 chr8 HAVANA gene 59760047 59760263 217.0 + 0 ENSG00000253413.1 processed_pseudogene AC107934.1 2 OTTHUMG00000164308.1 +58314 chr8 HAVANA gene 59821124 59821433 310.0 + 0 ENSG00000253723.1 processed_pseudogene AC107934.2 1 OTTHUMG00000164309.2 pseudo_consens +58315 chr8 HAVANA gene 59893856 59893942 87.0 - 0 ENSG00000278428.1 unprocessed_pseudogene AC022709.1 2 OTTHUMG00000187724.1 +58316 chr8 HAVANA gene 60049587 60074715 433.0 + 0 ENSG00000254775.1 lincRNA AC021393.1 1 OTTHUMG00000165323.1 +58317 chr8 HAVANA gene 60141821 60142142 322.0 + 0 ENSG00000254954.1 processed_pseudogene SLC2A13P1 2 OTTHUMG00000165324.1 +58318 chr8 HAVANA gene 60187347 60281412 5783.0 - 0 ENSG00000178538.9 protein_coding CA8 2 OTTHUMG00000165325.1 +58319 chr8 HAVANA gene 60387262 60387995 734.0 + 0 ENSG00000226301.3 processed_pseudogene PDCL3P1 1 OTTHUMG00000165327.1 pseudo_consens +58320 chr8 HAVANA gene 60384588 60516795 4428.0 - 0 ENSG00000251396.6 lincRNA LINC01301 2 OTTHUMG00000165326.1 +58321 chr8 HAVANA gene 60551957 60553036 689.0 - 0 ENSG00000255321.1 antisense AC068389.3 2 OTTHUMG00000165328.1 +58322 chr8 HAVANA gene 60516857 60623627 5654.0 + 0 ENSG00000104388.14 protein_coding RAB2A 2 OTTHUMG00000134298.4 +58323 chr8 HAVANA gene 60629662 60653561 6063.0 - 0 ENSG00000228862.4 lincRNA AC068389.1 2 OTTHUMG00000165329.3 +58324 chr8 HAVANA gene 60660820 60664530 529.0 + 0 ENSG00000255289.1 lincRNA AC068389.2 1 OTTHUMG00000165331.1 +58325 chr8 HAVANA gene 60808735 60809606 301.0 - 0 ENSG00000254432.1 antisense AC113143.1 1 OTTHUMG00000165333.1 +58326 chr8 HAVANA gene 60678778 60868028 16982.0 + 0 ENSG00000171316.11 protein_coding CHD7 1 OTTHUMG00000165332.5 +58327 chr8 HAVANA gene 60906059 60906452 394.0 + 0 ENSG00000271377.1 processed_pseudogene AC113143.2 1 OTTHUMG00000184688.1 pseudo_consens +58328 chr8 HAVANA gene 60937705 60939871 2167.0 - 0 ENSG00000255397.1 processed_pseudogene AC022182.3 1 OTTHUMG00000165335.1 pseudo_consens +58329 chr8 HAVANA gene 60910053 60966557 1363.0 + 0 ENSG00000254777.5 lincRNA AC022182.1 2 OTTHUMG00000165334.1 +58330 chr8 HAVANA gene 60965802 60967775 859.0 - 0 ENSG00000254802.1 lincRNA AC022182.2 2 OTTHUMG00000165336.1 +58331 chr8 HAVANA gene 61202350 61203220 871.0 + 0 ENSG00000213881.3 processed_pseudogene NPM1P6 1 OTTHUMG00000164349.1 pseudo_consens,overlapping_locus +58332 chr8 HAVANA gene 61264624 61292039 387.0 - 0 ENSG00000254222.1 antisense AC023866.2 2 OTTHUMG00000164350.1 +58333 chr8 HAVANA gene 61300164 61301069 680.0 - 0 ENSG00000253711.1 antisense AC023866.1 1 OTTHUMG00000164351.1 +58334 chr8 HAVANA gene 61057158 61501645 7393.0 + 0 ENSG00000177182.10 protein_coding CLVS1 1 OTTHUMG00000164334.7 overlapping_locus +58335 chr8 HAVANA gene 61578220 61579668 1449.0 + 0 ENSG00000254285.3 processed_pseudogene KRT8P3 1 OTTHUMG00000164401.1 pseudo_consens +58336 chr8 ENSEMBL gene 61631680 61632012 333.0 - 0 ENSG00000222898.1 misc_RNA RN7SKP97 3 +58337 chr8 HAVANA gene 61500556 61714640 20047.0 - 0 ENSG00000198363.17 protein_coding ASPH 2 OTTHUMG00000164375.12 ncRNA_host +58338 chr8 ENSEMBL gene 61714788 61714859 72.0 + 0 ENSG00000264408.1 miRNA MIR4470 3 +58339 chr8 HAVANA gene 61759094 61765969 2750.0 - 0 ENSG00000251127.2 lincRNA AC091173.1 2 OTTHUMG00000164337.1 +58340 chr8 HAVANA gene 61821481 61825252 606.0 - 0 ENSG00000253834.1 lincRNA AC025524.1 2 OTTHUMG00000164338.1 +58341 chr8 HAVANA gene 61889839 61894206 407.0 + 0 ENSG00000254120.1 lincRNA LINC02155 2 OTTHUMG00000164340.1 overlapping_locus +58342 chr8 HAVANA gene 61909984 61910802 819.0 - 0 ENSG00000253544.1 processed_pseudogene C1GALT1P3 1 OTTHUMG00000164341.1 pseudo_consens +58343 chr8 HAVANA gene 61785047 61944180 3155.0 + 0 ENSG00000254119.5 lincRNA AC025524.2 2 OTTHUMG00000164339.2 overlapping_locus +58344 chr8 HAVANA gene 62110524 62119898 983.0 + 0 ENSG00000253789.1 transcribed_processed_pseudogene NARSP2 1 OTTHUMG00000164342.2 pseudo_consens +58345 chr8 HAVANA gene 62143311 62144769 1459.0 - 0 ENSG00000237810.3 processed_pseudogene AC104852.1 1 OTTHUMG00000164344.1 pseudo_consens +58346 chr8 HAVANA gene 62191088 62249879 2664.0 - 0 ENSG00000285971.1 lincRNA AC023095.1 2 OTTHUMG00000192680.1 +58347 chr8 HAVANA gene 62473217 62474269 513.0 - 0 ENSG00000254050.1 antisense AC018861.2 2 OTTHUMG00000164345.1 +58348 chr8 HAVANA gene 62482198 62483811 1614.0 - 0 ENSG00000253975.1 processed_pseudogene AC018861.1 1 OTTHUMG00000164346.1 pseudo_consens +58349 chr8 HAVANA gene 62855068 62857134 2067.0 - 0 ENSG00000253517.1 processed_pseudogene XRCC6P4 1 OTTHUMG00000164362.1 pseudo_consens +58350 chr8 HAVANA gene 62863082 62864181 1100.0 - 0 ENSG00000253431.1 processed_pseudogene SRPK2P 1 OTTHUMG00000164363.1 pseudo_consens +58351 chr8 HAVANA gene 62977861 62984900 7040.0 + 0 ENSG00000274956.2 lincRNA NKAIN3-IT1 2 OTTHUMG00000189279.1 +58352 chr8 HAVANA gene 62248591 62999652 2924.0 + 0 ENSG00000185942.11 protein_coding NKAIN3 2 OTTHUMG00000164361.4 +58353 chr8 HAVANA gene 63013068 63014681 550.0 + 0 ENSG00000240915.2 antisense AC120042.1 2 OTTHUMG00000164364.1 +58354 chr8 HAVANA gene 63024372 63025294 667.0 + 0 ENSG00000253121.1 antisense AC120042.2 2 OTTHUMG00000164366.1 +58355 chr8 HAVANA gene 63015079 63039171 3130.0 - 0 ENSG00000137563.11 protein_coding GGH 2 OTTHUMG00000164365.3 +58356 chr8 HAVANA gene 63048553 63086053 2389.0 - 0 ENSG00000137561.4 protein_coding TTPA 2 OTTHUMG00000164367.2 +58357 chr8 HAVANA gene 63136223 63138084 1406.0 - 0 ENSG00000253555.1 unprocessed_pseudogene AC011978.1 1 OTTHUMG00000164368.1 pseudo_consens +58358 chr8 HAVANA gene 63167725 63168442 718.0 - 0 ENSG00000270673.1 lincRNA YTHDF3-AS1 2 OTTHUMG00000185282.1 +58359 chr8 HAVANA gene 63168553 63212786 6163.0 + 0 ENSG00000185728.16 protein_coding YTHDF3 1 OTTHUMG00000164369.15 +58360 chr8 HAVANA gene 63215981 63218034 2054.0 + 0 ENSG00000261542.1 lincRNA AC011978.2 2 OTTHUMG00000173254.1 +58361 chr8 ENSEMBL gene 63234634 63234911 278.0 - 0 ENSG00000241964.3 misc_RNA RN7SL135P 3 +58362 chr8 HAVANA gene 63409064 63409457 394.0 + 0 ENSG00000215096.3 processed_pseudogene IFITM8P 1 OTTHUMG00000164395.1 pseudo_consens +58363 chr8 HAVANA gene 63384839 63470205 2927.0 - 0 ENSG00000253205.5 lincRNA AC011124.1 1 OTTHUMG00000164394.1 +58364 chr8 HAVANA gene 63465849 63475482 3795.0 + 0 ENSG00000253894.1 lincRNA AC011124.2 2 OTTHUMG00000164396.1 +58365 chr8 HAVANA gene 63586000 63589408 730.0 + 0 ENSG00000253583.1 lincRNA AC018953.1 2 OTTHUMG00000164397.1 +58366 chr8 ENSEMBL gene 63609354 63609600 247.0 - 0 ENSG00000252358.1 misc_RNA RN7SKP135 3 +58367 chr8 HAVANA gene 63704756 63751677 566.0 + 0 ENSG00000253762.1 lincRNA AC069133.1 2 OTTHUMG00000164398.1 +58368 chr8 HAVANA gene 63769430 63785501 3712.0 + 0 ENSG00000253734.1 lincRNA LINC01289 2 OTTHUMG00000164399.2 +58369 chr8 HAVANA gene 64331927 64332152 226.0 + 0 ENSG00000253231.1 processed_pseudogene COX6CP8 1 OTTHUMG00000164359.1 pseudo_consens +58370 chr8 HAVANA gene 63687179 64368558 1598.0 - 0 ENSG00000253554.6 lincRNA AC022639.1 2 OTTHUMG00000164358.3 +58371 chr8 ENSEMBL gene 64379149 64379257 109.0 + 0 ENSG00000207816.1 miRNA MIR124-2 3 +58372 chr8 HAVANA gene 64373328 64383787 3486.0 + 0 ENSG00000254377.5 lincRNA MIR124-2HG 1 OTTHUMG00000164360.2 ncRNA_host +58373 chr8 HAVANA gene 64554236 64554475 240.0 - 0 ENSG00000253750.1 processed_pseudogene AC090136.1 1 OTTHUMG00000164383.1 pseudo_consens +58374 chr8 HAVANA gene 64570913 64571332 420.0 - 0 ENSG00000253800.1 processed_pseudogene AC090136.2 1 OTTHUMG00000164384.1 pseudo_consens +58375 chr8 HAVANA gene 64574306 64581888 2875.0 - 0 ENSG00000254102.1 antisense AC090136.3 2 OTTHUMG00000164385.1 +58376 chr8 HAVANA gene 64580367 64583628 3262.0 + 0 ENSG00000180828.2 protein_coding BHLHE22 2 OTTHUMG00000164386.1 +58377 chr8 HAVANA gene 64703774 64734459 769.0 - 0 ENSG00000254330.1 sense_intronic AC104232.2 2 OTTHUMG00000164388.1 overlapping_locus +58378 chr8 HAVANA gene 64587763 64798761 2282.0 - 0 ENSG00000172817.3 protein_coding CYP7B1 2 OTTHUMG00000164387.2 overlapping_locus +58379 chr8 HAVANA gene 64801236 64817573 877.0 - 0 ENSG00000254006.5 lincRNA AC104232.1 2 OTTHUMG00000164389.1 +58380 chr8 HAVANA gene 64973488 64973848 361.0 - 0 ENSG00000253493.1 processed_pseudogene AC087808.1 1 OTTHUMG00000164370.1 pseudo_consens +58381 chr8 HAVANA gene 65155407 65155778 372.0 + 0 ENSG00000239261.1 processed_pseudogene RPL31P41 1 OTTHUMG00000158619.1 pseudo_consens +58382 chr8 HAVANA gene 65161145 65184210 2043.0 - 0 ENSG00000280725.2 lincRNA LINC00251 2 OTTHUMG00000189557.2 +58383 chr8 HAVANA gene 65377592 65378111 520.0 + 0 ENSG00000213873.4 processed_pseudogene PPIAP86 1 OTTHUMG00000164372.1 pseudo_consens +58384 chr8 HAVANA gene 65527008 65562780 2634.0 - 0 ENSG00000254081.1 lincRNA LINC01299 1 OTTHUMG00000164373.1 +58385 chr8 HAVANA gene 65591850 65592472 623.0 - 0 ENSG00000272010.1 lincRNA AC100814.1 2 OTTHUMG00000185471.1 +58386 chr8 ENSEMBL gene 65592731 65592820 90.0 + 0 ENSG00000200714.1 misc_RNA RF00019 3 +58387 chr8 HAVANA gene 65602456 65634217 3421.0 - 0 ENSG00000104442.9 protein_coding ARMC1 1 OTTHUMG00000164374.4 +58388 chr8 HAVANA gene 65714334 65714778 445.0 - 0 ENSG00000272155.1 antisense AC055822.1 2 OTTHUMG00000185472.1 +58389 chr8 HAVANA gene 65644734 65771261 4629.0 + 0 ENSG00000066855.15 protein_coding MTFR1 1 OTTHUMG00000164468.5 +58390 chr8 HAVANA gene 65717510 65842322 7425.0 - 0 ENSG00000205268.10 protein_coding PDE7A 2 OTTHUMG00000164469.3 +58391 chr8 HAVANA gene 65842752 65843331 580.0 + 0 ENSG00000272192.1 lincRNA AC100812.1 2 OTTHUMG00000185473.1 +58392 chr8 HAVANA gene 66021560 66100526 2937.0 + 0 ENSG00000147570.9 protein_coding DNAJC5B 2 OTTHUMG00000164470.3 +58393 chr8 HAVANA gene 66112667 66115207 1189.0 + 0 ENSG00000253190.3 lincRNA AC084082.1 1 OTTHUMG00000164472.3 +58394 chr8 HAVANA gene 66126896 66175487 3081.0 + 0 ENSG00000147573.16 protein_coding TRIM55 2 OTTHUMG00000164473.2 +58395 chr8 HAVANA gene 66176382 66178725 1543.0 - 0 ENSG00000147571.4 protein_coding CRH 2 OTTHUMG00000164474.2 +58396 chr8 HAVANA gene 66192093 66197315 2003.0 + 0 ENSG00000253138.5 lincRNA LINC00967 2 OTTHUMG00000164475.1 +58397 chr8 HAVANA gene 66419589 66428977 4366.0 - 0 ENSG00000246145.1 lincRNA RRS1-AS1 1 OTTHUMG00000164956.1 +58398 chr8 HAVANA gene 66429028 66430733 1706.0 + 0 ENSG00000179041.3 protein_coding RRS1 2 OTTHUMG00000164765.2 overlapping_locus +58399 chr8 HAVANA gene 66430185 66445324 557.0 + 0 ENSG00000285655.1 protein_coding AC009879.2 2 OTTHUMG00000150215.5 overlapping_locus +58400 chr8 HAVANA gene 66432486 66468907 3384.0 + 0 ENSG00000147576.16 protein_coding ADHFE1 2 OTTHUMG00000193427.1 overlapping_locus +58401 chr8 HAVANA gene 66480648 66481486 839.0 + 0 ENSG00000253623.1 processed_pseudogene AC009879.1 1 OTTHUMG00000164742.1 pseudo_consens,overlapping_locus +58402 chr8 ENSEMBL gene 66501205 66501311 107.0 - 0 ENSG00000206949.1 snRNA RNU6-1324P 3 +58403 chr8 HAVANA gene 66493208 66518524 5074.0 + 0 ENSG00000169085.12 protein_coding VXN 1 OTTHUMG00000156998.9 overlapping_locus +58404 chr8 HAVANA gene 66432486 66518524 4999.0 + 0 ENSG00000285791.1 protein_coding AC009879.3 2 OTTHUMG00000193364.1 overlapping_locus +58405 chr8 HAVANA gene 66562175 66614247 7239.0 - 0 ENSG00000185697.16 protein_coding MYBL1 1 OTTHUMG00000164559.5 +58406 chr8 ENSEMBL gene 66653469 66653576 108.0 + 0 ENSG00000201365.1 misc_RNA RF00019 3 +58407 chr8 HAVANA gene 66628487 66667217 9942.0 - 0 ENSG00000175073.7 protein_coding VCPIP1 2 OTTHUMG00000164560.1 +58408 chr8 HAVANA gene 66667615 66685564 2505.0 + 0 ENSG00000213865.7 protein_coding C8orf44 2 OTTHUMG00000164562.3 overlapping_locus +58409 chr8 HAVANA gene 66767400 66768005 606.0 - 0 ENSG00000213005.3 processed_pseudogene PTTG3P 1 OTTHUMG00000164788.1 pseudo_consens +58410 chr8 HAVANA gene 66667596 66862022 6474.0 + 0 ENSG00000104205.13 protein_coding SGK3 1 OTTHUMG00000164561.5 overlapping_locus +58411 chr8 HAVANA gene 66870749 66922048 6354.0 + 0 ENSG00000178460.17 protein_coding MCMDC2 2 OTTHUMG00000157068.3 +58412 chr8 ENSEMBL gene 66922467 66922555 89.0 - 0 ENSG00000254341.2 snoRNA SNORD87 3 +58413 chr8 HAVANA gene 66921684 66926398 1247.0 - 0 ENSG00000245910.8 processed_transcript SNHG6 2 OTTHUMG00000164743.4 ncRNA_host,overlapping_locus +58414 chr8 HAVANA gene 66946501 66962590 2589.0 - 0 ENSG00000261787.1 protein_coding TCF24 2 OTTHUMG00000177282.2 +58415 chr8 HAVANA gene 66984135 66986187 2053.0 - 0 ENSG00000253223.1 processed_pseudogene AC110998.1 1 OTTHUMG00000164746.1 pseudo_consens,overlapping_locus +58416 chr8 HAVANA gene 66964099 67056604 2250.0 - 0 ENSG00000178125.14 protein_coding PPP1R42 2 OTTHUMG00000164745.2 overlapping_locus +58417 chr8 HAVANA gene 67043079 67083783 7779.0 - 0 ENSG00000121022.13 protein_coding COPS5 1 OTTHUMG00000164563.5 overlapping_locus +58418 chr8 ENSEMBL gene 67099302 67099425 124.0 + 0 ENSG00000252637.1 rRNA_pseudogene RNA5SP268 3 +58419 chr8 HAVANA gene 67133554 67135911 1740.0 - 0 ENSG00000250869.2 unprocessed_pseudogene AC087359.1 2 OTTHUMG00000160461.2 +58420 chr8 HAVANA gene 67062426 67196263 7096.0 + 0 ENSG00000104218.14 protein_coding CSPP1 1 OTTHUMG00000164564.5 +58421 chr8 HAVANA gene 67173511 67343677 10964.0 - 0 ENSG00000066777.8 protein_coding ARFGEF1 1 OTTHUMG00000164626.7 +58422 chr8 HAVANA gene 67343975 67345087 1113.0 + 0 ENSG00000271966.1 lincRNA AC021321.1 2 OTTHUMG00000185478.1 +58423 chr8 HAVANA gene 67406515 67407072 558.0 + 0 ENSG00000241961.1 processed_pseudogene AC011037.1 1 OTTHUMG00000158620.1 pseudo_consens +58424 chr8 HAVANA gene 67569416 67570078 663.0 + 0 ENSG00000254253.1 processed_pseudogene NACAP10 1 OTTHUMG00000164627.1 pseudo_consens +58425 chr8 HAVANA gene 67732587 67735665 550.0 + 0 ENSG00000255130.1 antisense AC022874.1 1 OTTHUMG00000165216.1 +58426 chr8 HAVANA gene 67422038 67746385 2894.0 - 0 ENSG00000165078.12 protein_coding CPA6 2 OTTHUMG00000164575.6 +58427 chr8 HAVANA gene 67849044 67849338 295.0 + 0 ENSG00000255531.1 processed_pseudogene NDUFS5P6 1 OTTHUMG00000165217.1 pseudo_consens +58428 chr8 HAVANA gene 68082204 68095081 774.0 - 0 ENSG00000255206.1 antisense AC011853.2 1 OTTHUMG00000165218.1 +58429 chr8 HAVANA gene 68176768 68177221 454.0 + 0 ENSG00000254051.1 processed_pseudogene AC011853.1 1 OTTHUMG00000164403.1 pseudo_consens,overlapping_locus +58430 chr8 ENSEMBL gene 68223318 68223402 85.0 - 0 ENSG00000252210.1 misc_RNA RF00019 3 +58431 chr8 HAVANA gene 67952118 68237030 12058.0 + 0 ENSG00000046889.18 protein_coding PREX2 2 OTTHUMG00000164402.2 overlapping_locus +58432 chr8 HAVANA gene 68293446 68293818 373.0 - 0 ENSG00000253964.1 processed_pseudogene RPL31P40 1 OTTHUMG00000164404.2 pseudo_consens +58433 chr8 HAVANA gene 68303468 68331491 1674.0 - 0 ENSG00000248801.6 antisense C8orf34-AS1 1 OTTHUMG00000164449.2 +58434 chr8 HAVANA gene 68525517 68525906 390.0 - 0 ENSG00000236191.3 processed_pseudogene RPS15AP25 1 OTTHUMG00000158623.1 pseudo_consens +58435 chr8 ENSEMBL gene 68695643 68695779 137.0 + 0 ENSG00000239184.1 rRNA_pseudogene RNA5SP269 3 +58436 chr8 HAVANA gene 68330722 68819022 10499.0 + 0 ENSG00000165084.15 protein_coding C8orf34 2 OTTHUMG00000164438.3 +58437 chr8 HAVANA gene 68848742 68852763 515.0 - 0 ENSG00000254337.1 lincRNA AC083967.1 2 OTTHUMG00000164447.1 +58438 chr8 HAVANA gene 68911803 69104190 2840.0 - 0 ENSG00000253658.5 lincRNA LINC01592 2 OTTHUMG00000164460.1 +58439 chr8 ENSEMBL gene 69110513 69110574 62.0 - 0 ENSG00000238808.1 snRNA RNU7-102P 3 +58440 chr8 HAVANA gene 69129598 69130345 748.0 + 0 ENSG00000254332.1 processed_pseudogene AF201337.1 1 OTTHUMG00000164462.1 pseudo_consens +58441 chr8 HAVANA gene 69175579 69178189 453.0 - 0 ENSG00000253373.1 lincRNA AC021785.1 2 OTTHUMG00000164463.1 +58442 chr8 HAVANA gene 69446057 69446260 204.0 + 0 ENSG00000253216.1 processed_pseudogene AC022790.1 1 OTTHUMG00000164465.1 pseudo_consens +58443 chr8 HAVANA gene 69425035 69448244 1418.0 - 0 ENSG00000253479.5 lincRNA LINC01603 2 OTTHUMG00000165095.1 +58444 chr8 HAVANA gene 69466624 69660915 9404.0 + 0 ENSG00000137573.13 protein_coding SULF1 2 OTTHUMG00000164466.5 +58445 chr8 ENSEMBL gene 69700224 69700495 272.0 + 0 ENSG00000222889.1 misc_RNA RN7SKP29 3 +58446 chr8 HAVANA gene 69713390 69719722 552.0 + 0 ENSG00000254557.1 antisense AC091047.1 2 OTTHUMG00000165129.1 +58447 chr8 HAVANA gene 69794062 69794734 673.0 + 0 ENSG00000271113.1 processed_pseudogene AC079089.3 1 OTTHUMG00000184674.1 pseudo_consens +58448 chr8 HAVANA gene 69667047 69835064 9992.0 - 0 ENSG00000137571.10 protein_coding SLCO5A1 1 OTTHUMG00000165121.4 +58449 chr8 ENSEMBL gene 69851148 69851436 289.0 - 0 ENSG00000277740.1 misc_RNA RF00017 3 +58450 chr8 HAVANA gene 69834111 69854971 1967.0 + 0 ENSG00000246528.3 antisense AC079089.1 2 OTTHUMG00000165122.3 +58451 chr8 HAVANA gene 69859264 69860540 1277.0 - 0 ENSG00000255107.1 processed_pseudogene AC079089.2 1 OTTHUMG00000165123.1 pseudo_consens +58452 chr8 ENSEMBL gene 69922751 69923047 297.0 - 0 ENSG00000239580.3 misc_RNA RN7SL675P 3 +58453 chr8 ENSEMBL gene 69929905 69930022 118.0 + 0 ENSG00000223293.1 rRNA_pseudogene RNA5SP270 3 +58454 chr8 HAVANA gene 69938168 69938400 233.0 + 0 ENSG00000280393.1 TEC AC090574.1 2 OTTHUMG00000187190.1 +58455 chr8 HAVANA gene 69942948 69944648 885.0 + 0 ENSG00000247570.2 processed_pseudogene SDCBPP2 1 OTTHUMG00000160524.1 pseudo_consens +58456 chr8 HAVANA gene 69987415 69987697 283.0 - 0 ENSG00000253721.1 processed_pseudogene SUMO2P20 1 OTTHUMG00000164433.1 pseudo_consens +58457 chr8 HAVANA gene 70051651 70071693 2443.0 - 0 ENSG00000147596.3 protein_coding PRDM14 2 OTTHUMG00000150495.3 +58458 chr8 ENSEMBL gene 70077906 70078032 127.0 - 0 ENSG00000212473.1 snRNA RNU1-101P 3 +58459 chr8 HAVANA gene 70103798 70104179 382.0 - 0 ENSG00000253173.3 processed_pseudogene H2AFZP2 1 OTTHUMG00000164434.1 pseudo_consens +58460 chr8 HAVANA gene 70273369 70273837 469.0 + 0 ENSG00000213003.3 processed_pseudogene BTF3P12 1 OTTHUMG00000164435.1 pseudo_consens +58461 chr8 ENSEMBL gene 70357347 70357448 102.0 + 0 ENSG00000207036.1 misc_RNA RNY3P14 3 +58462 chr8 HAVANA gene 70109762 70403805 10026.0 - 0 ENSG00000140396.12 protein_coding NCOA2 2 OTTHUMG00000164671.3 +58463 chr8 HAVANA gene 70424125 70424576 452.0 - 0 ENSG00000241204.1 processed_pseudogene AC022730.2 1 OTTHUMG00000158624.1 pseudo_consens +58464 chr8 ENSEMBL gene 70480192 70480487 296.0 - 0 ENSG00000275128.1 misc_RNA RN7SL203P 3 +58465 chr8 HAVANA gene 70471112 70480623 736.0 - 0 ENSG00000253143.3 lincRNA AC022730.3 2 OTTHUMG00000164436.1 ncRNA_host +58466 chr8 HAVANA gene 70471134 70485687 2367.0 + 0 ENSG00000253967.1 lincRNA AC022730.4 2 OTTHUMG00000164437.1 +58467 chr8 HAVANA gene 70506251 70506818 568.0 - 0 ENSG00000241105.1 processed_pseudogene AC022730.1 1 OTTHUMG00000158625.1 pseudo_consens +58468 chr8 HAVANA gene 70573442 70608387 3878.0 - 0 ENSG00000067167.7 protein_coding TRAM1 2 OTTHUMG00000164428.2 +58469 chr8 ENSEMBL gene 70654578 70654883 306.0 - 0 ENSG00000243532.3 misc_RNA RN7SL19P 3 +58470 chr8 HAVANA gene 70608577 70663279 5450.0 + 0 ENSG00000246366.6 antisense LACTB2-AS1 1 OTTHUMG00000164429.2 +58471 chr8 HAVANA gene 70635318 70669174 1931.0 - 0 ENSG00000147592.8 protein_coding LACTB2 2 OTTHUMG00000164430.1 ncRNA_host +58472 chr8 ENSEMBL gene 70780914 70781008 95.0 - 0 ENSG00000223220.1 misc_RNA RF00019 3 +58473 chr8 HAVANA gene 70669365 70790371 3905.0 + 0 ENSG00000221947.7 protein_coding XKR9 2 OTTHUMG00000164431.3 overlapping_locus +58474 chr8 HAVANA gene 71155457 71204223 977.0 + 0 ENSG00000254031.5 antisense AC022858.1 2 OTTHUMG00000164432.2 overlapping_locus +58475 chr8 HAVANA gene 70669369 71228629 2597.0 + 0 ENSG00000285579.1 processed_transcript AC015687.1 2 OTTHUMG00000193365.1 overlapping_locus +58476 chr8 HAVANA gene 71448811 71449219 409.0 - 0 ENSG00000253124.1 processed_pseudogene TRAPPC2P2 1 OTTHUMG00000164467.1 pseudo_consens,overlapping_locus +58477 chr8 HAVANA gene 71197433 71592025 9418.0 - 0 ENSG00000104313.18 protein_coding EYA1 2 OTTHUMG00000149894.16 +58478 chr8 HAVANA gene 71675300 71702786 901.0 + 0 ENSG00000254277.1 lincRNA AC009446.1 2 OTTHUMG00000164487.1 +58479 chr8 HAVANA gene 71779605 71792875 719.0 - 0 ENSG00000253287.1 lincRNA AC104012.1 1 OTTHUMG00000164488.1 +58480 chr8 ENSEMBL gene 71815494 71815625 132.0 - 0 ENSG00000200191.1 snoRNA RF00096 3 +58481 chr8 HAVANA gene 71841549 71844468 2113.0 - 0 ENSG00000178860.8 protein_coding MSC 2 OTTHUMG00000164489.1 +58482 chr8 HAVANA gene 71895991 71896330 340.0 + 0 ENSG00000241942.2 processed_pseudogene RPS20P20 1 OTTHUMG00000158627.2 pseudo_consens,overlapping_locus +58483 chr8 HAVANA gene 72019917 72075617 6377.0 - 0 ENSG00000104321.10 protein_coding TRPA1 2 OTTHUMG00000164516.3 +58484 chr8 HAVANA gene 71828167 72118393 6284.0 + 0 ENSG00000235531.9 antisense MSC-AS1 1 OTTHUMG00000164497.3 overlapping_locus +58485 chr8 HAVANA gene 72196334 72202269 798.0 + 0 ENSG00000253317.1 lincRNA AC078906.1 1 OTTHUMG00000164458.1 +58486 chr8 HAVANA gene 72202751 72251565 3048.0 - 0 ENSG00000250979.1 unprocessed_pseudogene AC022905.1 2 OTTHUMG00000160469.1 +58487 chr8 ENSEMBL gene 72357728 72357815 88.0 + 0 ENSG00000252509.1 rRNA_pseudogene RNA5SP271 3 +58488 chr8 HAVANA gene 72429620 72430112 493.0 + 0 ENSG00000212989.3 processed_pseudogene AC124293.1 2 OTTHUMG00000165226.1 +58489 chr8 HAVANA gene 72462311 72470972 252.0 + 0 ENSG00000254347.1 lincRNA AC011131.1 2 OTTHUMG00000164459.1 +58490 chr8 HAVANA gene 72618722 72619383 662.0 - 0 ENSG00000253226.1 processed_pseudogene HAUS1P3 1 OTTHUMG00000164623.1 pseudo_consens +58491 chr8 HAVANA gene 72660584 72661470 603.0 - 0 ENSG00000278193.1 unprocessed_pseudogene AC013562.2 1 OTTHUMG00000187726.1 pseudo_consens +58492 chr8 HAVANA gene 72732045 72751843 1722.0 + 0 ENSG00000253726.1 sense_intronic AC013562.1 2 OTTHUMG00000164491.1 overlapping_locus +58493 chr8 HAVANA gene 72874859 72881740 488.0 - 0 ENSG00000253784.1 lincRNA AC090735.1 2 OTTHUMG00000164520.1 +58494 chr8 HAVANA gene 72537391 72938349 3582.0 + 0 ENSG00000182674.5 protein_coding KCNB2 2 OTTHUMG00000164498.2 overlapping_locus +58495 chr8 HAVANA gene 72947150 72950445 3296.0 + 0 ENSG00000260838.3 lincRNA AC022893.2 2 OTTHUMG00000164521.2 +58496 chr8 ENSEMBL gene 73018945 73019044 100.0 - 0 ENSG00000222488.1 snRNA RNU6-285P 3 +58497 chr8 HAVANA gene 73042910 73043346 437.0 - 0 ENSG00000272254.1 antisense AC022893.3 2 OTTHUMG00000185482.1 +58498 chr8 HAVANA gene 73008864 73048122 8831.0 + 0 ENSG00000147601.13 protein_coding TERF1 1 OTTHUMG00000164522.5 +58499 chr8 HAVANA gene 73052178 73063061 3549.0 + 0 ENSG00000253636.1 antisense AC022893.1 2 OTTHUMG00000164580.1 +58500 chr8 HAVANA gene 73083787 73085879 480.0 - 0 ENSG00000237061.1 sense_intronic AC100823.1 2 OTTHUMG00000157143.1 overlapping_locus +58501 chr8 HAVANA gene 73064540 73124088 4383.0 - 0 ENSG00000164764.10 protein_coding SBSPON 2 OTTHUMG00000157144.2 overlapping_locus +58502 chr8 HAVANA gene 73215929 73216627 699.0 - 0 ENSG00000253564.1 processed_pseudogene AC100823.2 1 OTTHUMG00000164624.1 pseudo_consens +58503 chr8 HAVANA gene 73241329 73259502 658.0 - 0 ENSG00000274443.4 protein_coding C8orf89 2 OTTHUMG00000189250.2 +58504 chr8 HAVANA gene 73277364 73278046 683.0 - 0 ENSG00000254213.2 processed_pseudogene FAM213AP2 1 OTTHUMG00000164917.2 pseudo_consens +58505 chr8 HAVANA gene 73290267 73295789 2907.0 - 0 ENSG00000147604.13 protein_coding RPL7 1 OTTHUMG00000134312.4 +58506 chr8 HAVANA gene 73294612 73325281 5321.0 + 0 ENSG00000121039.9 protein_coding RDH10 2 OTTHUMG00000164492.2 +58507 chr8 HAVANA gene 73297711 73356461 3801.0 - 0 ENSG00000250295.6 antisense RDH10-AS1 2 OTTHUMG00000164493.1 +58508 chr8 HAVANA gene 73358913 73362788 781.0 + 0 ENSG00000253339.1 lincRNA AC111149.2 2 OTTHUMG00000164494.1 +58509 chr8 HAVANA gene 73368770 73369295 343.0 - 0 ENSG00000253235.1 lincRNA AC111149.1 2 OTTHUMG00000164495.1 +58510 chr8 HAVANA gene 73420004 73441526 2279.0 + 0 ENSG00000253302.1 antisense STAU2-AS1 2 OTTHUMG00000164568.1 +58511 chr8 HAVANA gene 73511276 73511654 379.0 - 0 ENSG00000254273.1 processed_pseudogene AC018620.1 1 OTTHUMG00000164570.1 pseudo_consens,overlapping_locus +58512 chr8 HAVANA gene 73590574 73590883 310.0 + 0 ENSG00000253383.1 processed_pseudogene AC100784.1 1 OTTHUMG00000164571.1 pseudo_consens +58513 chr8 HAVANA gene 73651289 73651602 314.0 + 0 ENSG00000254105.1 processed_pseudogene VENTXP6 1 OTTHUMG00000164572.1 pseudo_consens +58514 chr8 HAVANA gene 73670441 73732897 707.0 + 0 ENSG00000254538.1 lincRNA AC027018.1 2 OTTHUMG00000165228.1 +58515 chr8 HAVANA gene 73420369 73747708 8998.0 - 0 ENSG00000040341.17 protein_coding STAU2 1 OTTHUMG00000164499.10 overlapping_locus +58516 chr8 HAVANA gene 73831143 73831947 805.0 + 0 ENSG00000253273.2 unprocessed_pseudogene AC022826.1 1 OTTHUMG00000164500.4 pseudo_consens +58517 chr8 ENSEMBL gene 73833773 73834042 270.0 - 0 ENSG00000272469.2 misc_RNA RN7SL760P 3 +58518 chr8 HAVANA gene 73688691 73878854 776.0 - 0 ENSG00000258677.2 protein_coding AC022826.2 2 OTTHUMG00000171407.2 ncRNA_host,overlapping_locus +58519 chr8 HAVANA gene 73780097 73878910 9090.0 - 0 ENSG00000104343.19 protein_coding UBE2W 2 OTTHUMG00000164517.5 ncRNA_host,overlapping_locus +58520 chr8 HAVANA gene 73905357 73915010 698.0 - 0 ENSG00000251633.3 unprocessed_pseudogene GYG1P1 1 OTTHUMG00000160472.4 pseudo_consens +58521 chr8 HAVANA gene 73939169 73972287 4934.0 - 0 ENSG00000154582.16 protein_coding ELOC 1 OTTHUMG00000164501.4 +58522 chr8 HAVANA gene 73982125 73982467 343.0 + 0 ENSG00000244295.2 processed_pseudogene RPS20P21 2 OTTHUMG00000158629.4 overlapping_locus +58523 chr8 HAVANA gene 73972437 73982783 2982.0 + 0 ENSG00000175606.10 protein_coding TMEM70 2 OTTHUMG00000164502.1 overlapping_locus +58524 chr8 HAVANA gene 73984493 73984883 391.0 + 0 ENSG00000253833.1 processed_pseudogene AC022868.1 1 OTTHUMG00000164503.2 pseudo_consens +58525 chr8 HAVANA gene 73991352 74029087 607.0 + 0 ENSG00000154589.6 protein_coding LY96 1 OTTHUMG00000164504.2 +58526 chr8 ENSEMBL gene 74048677 74048784 108.0 + 0 ENSG00000212348.1 snRNA RNU6-1300P 3 +58527 chr8 HAVANA gene 74055882 74056647 766.0 + 0 ENSG00000240047.2 processed_pseudogene RPS3AP32 1 OTTHUMG00000158628.3 pseudo_consens,overlapping_locus +58528 chr8 ENSEMBL gene 74079537 74079643 107.0 + 0 ENSG00000212485.1 snRNA RNU6-1197P 3 +58529 chr8 HAVANA gene 74052340 74099853 738.0 + 0 ENSG00000254288.1 lincRNA AC087672.2 2 OTTHUMG00000164505.1 ncRNA_host,overlapping_locus +58530 chr8 HAVANA gene 74103516 74106744 429.0 + 0 ENSG00000253115.1 lincRNA AC087672.1 2 OTTHUMG00000164519.1 +58531 chr8 HAVANA gene 74199396 74208441 993.0 + 0 ENSG00000253983.2 antisense AC087627.1 2 OTTHUMG00000164506.2 +58532 chr8 HAVANA gene 74234700 74321328 4378.0 - 0 ENSG00000104369.4 protein_coding JPH1 2 OTTHUMG00000164524.1 +58533 chr8 HAVANA gene 74347757 74350050 590.0 - 0 ENSG00000253596.1 antisense AC103952.1 1 OTTHUMG00000164510.1 +58534 chr8 ENSEMBL gene 74376687 74376793 107.0 + 0 ENSG00000207417.1 misc_RNA RF00019 3 +58535 chr8 HAVANA gene 74321130 74488872 4052.0 + 0 ENSG00000104381.12 protein_coding GDAP1 2 OTTHUMG00000164509.2 ncRNA_host +58536 chr8 ENSEMBL gene 74548550 74548609 60.0 - 0 ENSG00000283505.1 miRNA MIR5681B 3 +58537 chr8 ENSEMBL gene 74548543 74548617 75.0 + 0 ENSG00000266502.1 miRNA MIR5681A 3 +58538 chr8 HAVANA gene 74603244 74604244 1001.0 - 0 ENSG00000253341.1 processed_pseudogene AC115837.1 1 OTTHUMG00000164512.1 pseudo_consens +58539 chr8 HAVANA gene 74609698 74633320 677.0 - 0 ENSG00000254080.1 antisense AC115837.2 2 OTTHUMG00000164513.1 +58540 chr8 ENSEMBL gene 74705693 74705747 55.0 + 0 ENSG00000283188.1 miRNA MIR2052 3 +58541 chr8 HAVANA gene 74804287 74804811 525.0 - 0 ENSG00000253777.1 processed_pseudogene AC026616.1 2 OTTHUMG00000164515.2 overlapping_locus +58542 chr8 HAVANA gene 74599775 74823313 2906.0 + 0 ENSG00000254349.5 lincRNA MIR2052HG 1 OTTHUMG00000164511.2 ncRNA_host +58543 chr8 HAVANA gene 74824534 74855029 7159.0 + 0 ENSG00000137558.8 protein_coding PI15 2 OTTHUMG00000164528.3 +58544 chr8 HAVANA gene 74798784 74866939 3611.0 - 0 ENSG00000253706.5 antisense AC011632.1 2 OTTHUMG00000164543.1 overlapping_locus +58545 chr8 HAVANA gene 74891151 74896302 738.0 - 0 ENSG00000254043.1 lincRNA AC011632.2 2 OTTHUMG00000164544.1 +58546 chr8 HAVANA gene 75026428 75029460 590.0 - 0 ENSG00000254238.1 antisense AC100782.1 2 OTTHUMG00000164545.1 +58547 chr8 HAVANA gene 74984515 75034558 4543.0 + 0 ENSG00000121005.8 protein_coding CRISPLD1 1 OTTHUMG00000164529.2 +58548 chr8 HAVANA gene 75167704 75176656 490.0 - 0 ENSG00000253712.1 lincRNA AC022274.1 2 OTTHUMG00000164546.1 +58549 chr8 HAVANA gene 75302296 75302574 279.0 + 0 ENSG00000253229.1 processed_pseudogene HIGD1AP6 1 OTTHUMG00000164548.1 pseudo_consens +58550 chr8 HAVANA gene 75223404 75324741 1473.0 - 0 ENSG00000249395.2 lincRNA CASC9 2 OTTHUMG00000164547.1 +58551 chr8 HAVANA gene 75376709 75377014 306.0 + 0 ENSG00000254023.1 processed_pseudogene PKMP4 1 OTTHUMG00000164549.1 pseudo_consens +58552 chr8 HAVANA gene 75407914 75566843 4806.0 + 0 ENSG00000164749.11 protein_coding HNF4G 2 OTTHUMG00000149920.2 +58553 chr8 ENSEMBL gene 76265543 76265732 190.0 - 0 ENSG00000222231.1 snRNA RNU2-54P 3 +58554 chr8 HAVANA gene 76403998 76405091 1094.0 + 0 ENSG00000270866.1 lincRNA AC067773.1 2 OTTHUMG00000184924.1 overlapping_locus +58555 chr8 HAVANA gene 76404058 76407138 3081.0 + 0 ENSG00000271167.1 lincRNA LINC01109 2 OTTHUMG00000184925.1 overlapping_locus +58556 chr8 HAVANA gene 76406654 76524356 1663.0 + 0 ENSG00000254300.1 lincRNA LINC01111 2 OTTHUMG00000164553.1 overlapping_locus +58557 chr8 HAVANA gene 76576551 76579345 339.0 - 0 ENSG00000253681.1 sense_intronic AC013509.1 1 OTTHUMG00000164555.1 overlapping_locus +58558 chr8 HAVANA gene 76603240 76603852 613.0 - 0 ENSG00000254305.1 transcribed_processed_pseudogene MRPL9P1 1 OTTHUMG00000164556.1 pseudo_consens,overlapping_locus +58559 chr8 HAVANA gene 76491200 76683278 2251.0 - 0 ENSG00000253661.1 antisense ZFHX4-AS1 2 OTTHUMG00000164554.1 overlapping_locus +58560 chr8 ENSEMBL gene 76733302 76733476 175.0 - 0 ENSG00000276673.1 misc_RNA RF02271 3 +58561 chr8 HAVANA gene 76681219 76867285 15687.0 + 0 ENSG00000091656.16 protein_coding ZFHX4 2 OTTHUMG00000164557.5 +58562 chr8 HAVANA gene 76904591 76913399 651.0 + 0 ENSG00000253416.1 lincRNA AC023200.1 1 OTTHUMG00000164558.1 +58563 chr8 ENSEMBL gene 76966768 76966850 83.0 - 0 ENSG00000266712.3 miRNA MIR3149 3 +58564 chr8 HAVANA gene 76980258 77001044 4969.0 - 0 ENSG00000164751.14 protein_coding PEX2 2 OTTHUMG00000164530.3 +58565 chr8 HAVANA gene 77013751 77014028 278.0 - 0 ENSG00000253952.1 processed_pseudogene HIGD1AP18 1 OTTHUMG00000164625.1 pseudo_consens +58566 chr8 HAVANA gene 77399072 77537290 864.0 + 0 ENSG00000254366.6 lincRNA AC062004.1 2 OTTHUMG00000164531.1 +58567 chr8 HAVANA gene 78148101 78153913 690.0 + 0 ENSG00000254001.5 lincRNA AC084706.1 2 OTTHUMG00000164616.1 +58568 chr8 ENSEMBL gene 78398515 78398622 108.0 - 0 ENSG00000252935.1 snRNA RNU6-1220P 3 +58569 chr8 HAVANA gene 78426103 78558503 2656.0 - 0 ENSG00000254266.5 lincRNA PKIA-AS1 2 OTTHUMG00000164617.1 +58570 chr8 HAVANA gene 78516139 78605267 4216.0 + 0 ENSG00000171033.12 protein_coding PKIA 2 OTTHUMG00000164618.1 +58571 chr8 HAVANA gene 78605952 78609705 3754.0 + 0 ENSG00000260398.1 sense_overlapping AC068700.1 2 OTTHUMG00000173418.1 +58572 chr8 HAVANA gene 78666047 78719765 4181.0 + 0 ENSG00000104427.11 protein_coding ZC2HC1A 1 OTTHUMG00000164619.2 +58573 chr8 HAVANA gene 78723796 78724136 341.0 - 0 ENSG00000254352.1 processed_pseudogene AC100854.1 1 OTTHUMG00000164622.1 pseudo_consens,overlapping_locus +58574 chr8 HAVANA gene 78760142 78762431 2290.0 - 0 ENSG00000253919.1 processed_pseudogene THAP12P7 1 OTTHUMG00000164621.1 pseudo_consens,overlapping_locus +58575 chr8 HAVANA gene 78675743 78805523 3392.0 - 0 ENSG00000104432.13 protein_coding IL7 2 OTTHUMG00000164620.1 overlapping_locus +58576 chr8 HAVANA gene 78837529 78840522 2994.0 + 0 ENSG00000261618.1 lincRNA AC083837.1 2 OTTHUMG00000173421.1 overlapping_locus +58577 chr8 HAVANA gene 78805293 78956082 2921.0 + 0 ENSG00000285744.1 bidirectional_promoter_lncRNA AC083837.2 2 OTTHUMG00000192693.1 +58578 chr8 HAVANA gene 79297717 79314471 633.0 + 0 ENSG00000253659.1 lincRNA AC138646.1 2 OTTHUMG00000164525.1 +58579 chr8 HAVANA gene 79520145 79520649 505.0 + 0 ENSG00000253391.1 processed_pseudogene AC100870.1 2 OTTHUMG00000164526.1 +58580 chr8 HAVANA gene 79571153 79572335 1183.0 - 0 ENSG00000240540.2 processed_pseudogene RPL3P9 1 OTTHUMG00000158635.2 pseudo_consens +58581 chr8 HAVANA gene 79610814 79666175 2362.0 + 0 ENSG00000104435.13 protein_coding STMN2 1 OTTHUMG00000164610.3 +58582 chr8 HAVANA gene 79764010 79767863 3232.0 - 0 ENSG00000164683.16 protein_coding HEY1 1 OTTHUMG00000164641.3 +58583 chr8 ENSEMBL gene 79800133 79800195 63.0 - 0 ENSG00000238884.1 snRNA RNU7-85P 3 +58584 chr8 HAVANA gene 79768142 79802842 789.0 + 0 ENSG00000272138.1 lincRNA LINC01607 2 OTTHUMG00000185488.1 +58585 chr8 HAVANA gene 79769372 79871759 2455.0 - 0 ENSG00000249328.2 lincRNA AC036214.1 2 OTTHUMG00000164566.2 ncRNA_host +58586 chr8 HAVANA gene 79891595 79930832 1915.0 + 0 ENSG00000285758.1 antisense AC036214.4 2 OTTHUMG00000192744.1 +58587 chr8 HAVANA gene 79956465 79957381 917.0 - 0 ENSG00000272518.1 sense_intronic AC036214.2 2 OTTHUMG00000185346.1 overlapping_locus +58588 chr8 HAVANA gene 79918717 80030289 1817.0 - 0 ENSG00000147586.9 protein_coding MRPS28 1 OTTHUMG00000164642.6 overlapping_locus +58589 chr8 HAVANA gene 80032724 80033300 577.0 - 0 ENSG00000272264.1 lincRNA AC009686.2 2 OTTHUMG00000185496.1 overlapping_locus +58590 chr8 HAVANA gene 79918860 80080775 1527.0 - 0 ENSG00000276418.5 protein_coding AC036214.3 2 OTTHUMG00000186650.1 overlapping_locus +58591 chr8 HAVANA gene 80122852 80127670 364.0 + 0 ENSG00000254205.1 antisense AC009686.1 1 OTTHUMG00000164567.2 +58592 chr8 ENSEMBL gene 80204606 80204902 297.0 + 0 ENSG00000241550.3 misc_RNA RN7SL41P 3 +58593 chr8 HAVANA gene 80034745 80231232 8197.0 - 0 ENSG00000076554.15 protein_coding TPD52 1 OTTHUMG00000164565.13 overlapping_locus +58594 chr8 ENSEMBL gene 80241389 80241473 85.0 + 0 ENSG00000265588.1 miRNA MIR5708 3 +58595 chr8 HAVANA gene 80265528 80266155 628.0 - 0 ENSG00000241746.1 processed_pseudogene AC104212.2 1 OTTHUMG00000158636.1 pseudo_consens +58596 chr8 HAVANA gene 80300869 80301481 613.0 + 0 ENSG00000213791.4 processed_pseudogene AC104212.1 1 OTTHUMG00000158641.1 pseudo_consens,overlapping_locus +58597 chr8 ENSEMBL gene 80316939 80317069 131.0 - 0 ENSG00000206649.1 snoRNA RF00401 3 +58598 chr8 HAVANA gene 80351132 80351416 285.0 + 0 ENSG00000253237.2 processed_pseudogene AC034114.1 1 OTTHUMG00000164552.2 pseudo_consens +58599 chr8 ENSEMBL gene 80405516 80405609 94.0 + 0 ENSG00000252884.1 snRNA RNU6-1213P 3 +58600 chr8 HAVANA gene 80265927 80484316 1640.0 + 0 ENSG00000253238.2 lincRNA AC034114.2 2 OTTHUMG00000164551.2 ncRNA_host,overlapping_locus +58601 chr8 ENSEMBL gene 80484589 80484683 95.0 - 0 ENSG00000277604.1 misc_RNA RF00019 3 +58602 chr8 HAVANA gene 80484561 80486699 1672.0 - 0 ENSG00000251867.4 antisense AC009812.1 2 OTTHUMG00000185497.2 ncRNA_host +58603 chr8 HAVANA gene 80485619 80526265 10216.0 + 0 ENSG00000205189.11 protein_coding ZBTB10 1 OTTHUMG00000155016.6 +58604 chr8 HAVANA gene 80535006 80539135 3766.0 - 0 ENSG00000254162.1 lincRNA AC009812.3 2 OTTHUMG00000164576.1 +58605 chr8 HAVANA gene 80541300 80543104 1805.0 + 0 ENSG00000260317.1 lincRNA AC009812.4 2 OTTHUMG00000174444.1 +58606 chr8 HAVANA gene 80558870 80559757 888.0 + 0 ENSG00000188856.6 processed_pseudogene RPSAP47 2 OTTHUMG00000158642.1 +58607 chr8 ENSEMBL gene 80560567 80560625 59.0 + 0 ENSG00000252057.2 snRNA RNU7-174P 3 +58608 chr8 HAVANA gene 80568050 80568506 457.0 - 0 ENSG00000253760.1 processed_pseudogene AC009812.2 1 OTTHUMG00000164577.1 pseudo_consens +58609 chr8 ENSEMBL gene 80585585 80585773 189.0 - 0 ENSG00000223327.1 snRNA RNU2-71P 3 +58610 chr8 HAVANA gene 80594815 80595703 889.0 - 0 ENSG00000254181.1 processed_pseudogene SLC25A51P3 2 OTTHUMG00000164578.1 +58611 chr8 ENSEMBL gene 80613544 80613826 283.0 - 0 ENSG00000243424.2 misc_RNA RN7SL107P 3 +58612 chr8 HAVANA gene 80644939 80645173 235.0 - 0 ENSG00000254331.1 processed_pseudogene CKS1BP7 1 OTTHUMG00000164749.1 pseudo_consens,overlapping_locus +58613 chr8 ENSEMBL gene 80749561 80749693 133.0 - 0 ENSG00000212429.1 snRNA RNU11-6P 3 +58614 chr8 ENSEMBL gene 80776666 80776962 297.0 - 0 ENSG00000243951.1 misc_RNA RN7SL308P 3 +58615 chr8 HAVANA gene 80812142 80812581 440.0 - 0 ENSG00000253516.1 processed_pseudogene HMGB1P41 1 OTTHUMG00000164591.1 pseudo_consens,overlapping_locus +58616 chr8 HAVANA gene 80628451 80874781 15008.0 - 0 ENSG00000164684.13 protein_coding ZNF704 1 OTTHUMG00000164733.3 ncRNA_host,overlapping_locus +58617 chr8 HAVANA gene 81036964 81040831 545.0 + 0 ENSG00000254060.1 lincRNA AC022778.1 1 OTTHUMG00000164593.2 +58618 chr8 HAVANA gene 81058523 81067744 431.0 + 0 ENSG00000254177.1 lincRNA AC079209.2 2 OTTHUMG00000164594.1 +58619 chr8 HAVANA gene 80967810 81112068 11023.0 - 0 ENSG00000076641.4 protein_coding PAG1 2 OTTHUMG00000164592.3 +58620 chr8 HAVANA gene 81154279 81164599 1136.0 + 0 ENSG00000253214.1 lincRNA AC079209.1 2 OTTHUMG00000164595.1 +58621 chr8 HAVANA gene 81244156 81244338 183.0 + 0 ENSG00000254014.1 processed_pseudogene AC009902.1 1 OTTHUMG00000164596.1 pseudo_consens +58622 chr8 HAVANA gene 81254870 81255229 360.0 + 0 ENSG00000253677.1 processed_pseudogene UBE2HP1 1 OTTHUMG00000164597.1 pseudo_consens +58623 chr8 HAVANA gene 81275399 81277570 2172.0 - 0 ENSG00000272425.1 lincRNA AC009902.3 2 OTTHUMG00000185499.1 +58624 chr8 HAVANA gene 81279871 81281446 701.0 - 0 ENSG00000254027.1 antisense AC009902.2 2 OTTHUMG00000164598.1 +58625 chr8 HAVANA gene 81280363 81284777 2077.0 + 0 ENSG00000164687.10 protein_coding FABP5 1 OTTHUMG00000134313.1 +58626 chr8 HAVANA gene 81440326 81447523 3608.0 - 0 ENSG00000147588.6 protein_coding PMP2 1 OTTHUMG00000164600.1 +58627 chr8 HAVANA gene 81458341 81461579 497.0 - 0 ENSG00000205186.2 protein_coding FABP9 2 OTTHUMG00000164601.2 +58628 chr8 HAVANA gene 81478419 81483263 1396.0 - 0 ENSG00000170323.8 protein_coding FABP4 2 OTTHUMG00000164602.2 +58629 chr8 HAVANA gene 81439436 81521818 546.0 + 0 ENSG00000253859.2 antisense AC018616.1 1 OTTHUMG00000164599.2 overlapping_locus +58630 chr8 HAVANA gene 81521682 81522232 551.0 - 0 ENSG00000237264.4 processed_pseudogene FTH1P11 1 OTTHUMG00000164678.2 pseudo_consens +58631 chr8 HAVANA gene 81524981 81531378 613.0 - 0 ENSG00000197416.4 protein_coding FABP12 2 OTTHUMG00000164679.1 +58632 chr8 HAVANA gene 81521618 81533275 928.0 + 0 ENSG00000253374.5 antisense AC023644.1 2 OTTHUMG00000164677.1 overlapping_locus +58633 chr8 HAVANA gene 81617220 81618560 1341.0 - 0 ENSG00000254151.1 processed_pseudogene NIPA2P4 1 OTTHUMG00000164769.1 pseudo_consens,overlapping_locus +58634 chr8 HAVANA gene 81627269 81627617 349.0 + 0 ENSG00000240427.1 processed_pseudogene RPS26P34 1 OTTHUMG00000158661.1 pseudo_consens +58635 chr8 HAVANA gene 81605569 81631134 977.0 - 0 ENSG00000251521.2 transcribed_unprocessed_pseudogene IMPA1P1 1 OTTHUMG00000164680.1 pseudo_consens,overlapping_locus +58636 chr8 HAVANA gene 81634357 81635662 1306.0 - 0 ENSG00000205184.2 unprocessed_pseudogene SLC10A5P1 2 OTTHUMG00000164681.1 +58637 chr8 HAVANA gene 81657961 81686693 3720.0 - 0 ENSG00000133731.9 protein_coding IMPA1 2 OTTHUMG00000164682.3 +58638 chr8 HAVANA gene 81693607 81696174 2568.0 - 0 ENSG00000253598.1 protein_coding SLC10A5 2 OTTHUMG00000164683.1 +58639 chr8 HAVANA gene 81696368 81698694 2327.0 + 0 ENSG00000280193.1 TEC AC132219.2 2 OTTHUMG00000173431.1 +58640 chr8 HAVANA gene 81701334 81732903 4214.0 - 0 ENSG00000104231.10 protein_coding ZFAND1 2 OTTHUMG00000164684.5 +58641 chr8 HAVANA gene 81732434 81759515 1866.0 + 0 ENSG00000164695.4 protein_coding CHMP4C 2 OTTHUMG00000164726.1 +58642 chr8 HAVANA gene 81807772 81808726 955.0 + 0 ENSG00000231942.3 processed_pseudogene HNRNPA1P36 1 OTTHUMG00000164728.1 pseudo_consens,overlapping_locus +58643 chr8 HAVANA gene 81791823 81815714 478.0 + 0 ENSG00000253334.1 antisense AC132219.1 2 OTTHUMG00000164770.2 overlapping_locus +58644 chr8 HAVANA gene 81799581 81842866 4610.0 - 0 ENSG00000104497.13 protein_coding SNX16 2 OTTHUMG00000164727.4 +58645 chr8 HAVANA gene 81842618 81923199 1343.0 + 0 ENSG00000254689.2 bidirectional_promoter_lncRNA LINC02235 2 OTTHUMG00000165230.2 +58646 chr8 HAVANA gene 82098451 82160577 1164.0 - 0 ENSG00000254123.1 lincRNA AC027701.1 2 OTTHUMG00000164603.1 +58647 chr8 HAVANA gene 82291624 82292379 756.0 - 0 ENSG00000206228.4 processed_pseudogene HNRNPA1P4 1 OTTHUMG00000163344.1 pseudo_consens +58648 chr8 HAVANA gene 82514568 82677153 716.0 - 0 ENSG00000253503.5 lincRNA AC060765.1 2 OTTHUMG00000164855.1 +58649 chr8 HAVANA gene 82862779 82958696 814.0 - 0 ENSG00000253836.1 lincRNA AC105031.2 2 OTTHUMG00000164604.1 +58650 chr8 HAVANA gene 82912104 82961926 616.0 + 0 ENSG00000254394.1 lincRNA AC105031.3 2 OTTHUMG00000164605.1 +58651 chr8 HAVANA gene 82979411 82979886 476.0 + 0 ENSG00000253581.1 processed_pseudogene AC105031.1 1 OTTHUMG00000164606.1 pseudo_consens +58652 chr8 HAVANA gene 83099976 83100846 871.0 - 0 ENSG00000254189.1 processed_pseudogene AC090095.1 1 OTTHUMG00000164607.1 pseudo_consens +58653 chr8 HAVANA gene 83200952 83202431 1480.0 - 0 ENSG00000253423.1 processed_pseudogene AC090132.1 1 OTTHUMG00000164608.1 pseudo_consens +58654 chr8 HAVANA gene 83293925 83294271 347.0 - 0 ENSG00000274116.1 processed_pseudogene AC090132.2 2 OTTHUMG00000187729.1 +58655 chr8 HAVANA gene 83403758 83408900 1521.0 + 0 ENSG00000253898.1 lincRNA LINC01419 2 OTTHUMG00000164609.1 +58656 chr8 HAVANA gene 83912713 84140283 640.0 + 0 ENSG00000254202.1 lincRNA AC015522.1 2 OTTHUMG00000164613.1 +58657 chr8 HAVANA gene 84162118 84162471 354.0 + 0 ENSG00000254195.1 processed_pseudogene TPM3P3 1 OTTHUMG00000164614.1 pseudo_consens +58658 chr8 HAVANA gene 84163449 84164564 381.0 - 0 ENSG00000253362.1 unprocessed_pseudogene AC012400.1 2 OTTHUMG00000164845.1 +58659 chr8 ENSEMBL gene 84665759 84665865 107.0 - 0 ENSG00000206701.1 snRNA RNU6-1040P 3 +58660 chr8 HAVANA gene 84678798 84679842 1045.0 + 0 ENSG00000253137.1 processed_pseudogene AC092709.1 1 OTTHUMG00000164631.1 pseudo_consens,overlapping_locus +58661 chr8 HAVANA gene 84828573 84829479 541.0 - 0 ENSG00000248978.2 unprocessed_pseudogene AC009901.1 1 OTTHUMG00000160477.2 pseudo_consens +58662 chr8 HAVANA gene 84864668 84864907 240.0 - 0 ENSG00000254212.1 processed_pseudogene AC009901.2 1 OTTHUMG00000164856.1 pseudo_consens +58663 chr8 HAVANA gene 84182787 84921844 4538.0 + 0 ENSG00000184672.11 protein_coding RALYL 2 OTTHUMG00000164628.6 overlapping_locus +58664 chr8 HAVANA gene 84948585 84949674 1090.0 + 0 ENSG00000203413.3 processed_pseudogene ACTBP6 1 OTTHUMG00000164632.2 pseudo_consens +58665 chr8 HAVANA gene 84980073 84980547 475.0 - 0 ENSG00000253655.2 processed_pseudogene IGJP1 1 OTTHUMG00000164783.2 pseudo_consens +58666 chr8 HAVANA gene 85086615 85087186 572.0 + 0 ENSG00000253283.1 processed_pseudogene AC091175.1 2 OTTHUMG00000164633.1 +58667 chr8 HAVANA gene 85107147 85146076 5065.0 + 0 ENSG00000133739.15 protein_coding LRRCC1 2 OTTHUMG00000164784.1 +58668 chr8 HAVANA gene 85172077 85177062 1540.0 - 0 ENSG00000260493.1 antisense AC011773.4 2 OTTHUMG00000174465.1 +58669 chr8 HAVANA gene 85177522 85178150 468.0 - 0 ENSG00000254208.1 antisense AC011773.1 2 OTTHUMG00000164786.1 +58670 chr8 HAVANA gene 85177225 85217158 5928.0 + 0 ENSG00000133740.10 protein_coding E2F5 2 OTTHUMG00000164785.5 +58671 chr8 HAVANA gene 85214076 85220421 2514.0 - 0 ENSG00000176731.11 protein_coding C8orf59 2 OTTHUMG00000164787.9 +58672 chr8 HAVANA gene 85222446 85245717 1256.0 - 0 ENSG00000258256.1 antisense AC011773.3 1 OTTHUMG00000170116.1 +58673 chr8 HAVANA gene 85246295 85249848 285.0 - 0 ENSG00000257962.1 antisense AC011773.2 2 OTTHUMG00000170117.1 +58674 chr8 HAVANA gene 85220587 85284073 5528.0 + 0 ENSG00000185015.7 protein_coding CA13 2 OTTHUMG00000164940.1 +58675 chr8 HAVANA gene 85327608 85379014 4068.0 - 0 ENSG00000133742.13 protein_coding CA1 2 OTTHUMG00000164941.2 +58676 chr8 HAVANA gene 85373436 85449040 2310.0 + 0 ENSG00000164879.6 protein_coding CA3 2 OTTHUMG00000164942.2 +58677 chr8 HAVANA gene 85441851 85464915 1257.0 - 0 ENSG00000253549.5 antisense CA3-AS1 2 OTTHUMG00000164943.1 +58678 chr8 HAVANA gene 85463852 85481493 2123.0 + 0 ENSG00000104267.9 protein_coding CA2 2 OTTHUMG00000164944.2 +58679 chr8 HAVANA gene 85523899 85540511 677.0 + 0 ENSG00000254380.1 lincRNA AC093331.2 1 OTTHUMG00000164945.1 +58680 chr8 HAVANA gene 85617344 85617512 169.0 - 0 ENSG00000253680.1 processed_pseudogene AC093331.1 2 OTTHUMG00000164946.1 +58681 chr8 HAVANA gene 85642777 85646325 1897.0 - 0 ENSG00000270971.2 processed_pseudogene REXO1L8P 1 OTTHUMG00000184830.3 pseudo_consens +58682 chr8 HAVANA gene 85654684 85658514 1288.0 - 0 ENSG00000273567.1 processed_pseudogene REXO1L3P 1 OTTHUMG00000185912.4 pseudo_consens,overlapping_locus +58683 chr8 HAVANA gene 85656442 85663497 7056.0 - 0 ENSG00000205176.3 transcribed_processed_pseudogene REXO1L1P 1 OTTHUMG00000164949.4 pseudo_consens,overlapping_locus +58684 chr8 HAVANA gene 85714922 85715833 912.0 + 0 ENSG00000276006.1 processed_pseudogene REXO1L12P 1 OTTHUMG00000184581.3 pseudo_consens +58685 chr8 HAVANA gene 85733419 85737278 1927.0 + 0 ENSG00000275928.2 processed_pseudogene REXO1L11P 1 OTTHUMG00000187502.3 pseudo_consens +58686 chr8 HAVANA gene 85744543 85748373 1290.0 - 0 ENSG00000276540.1 processed_pseudogene REXO1L10P 1 OTTHUMG00000187503.3 pseudo_consens +58687 chr8 HAVANA gene 85762909 85766931 2108.0 - 0 ENSG00000271381.2 processed_pseudogene REXO1L9P 1 OTTHUMG00000184804.3 pseudo_consens +58688 chr8 HAVANA gene 85775106 85779090 2069.0 - 0 ENSG00000276998.1 processed_pseudogene REXO1L2P 1 OTTHUMG00000188058.1 pseudo_consens +58689 chr8 HAVANA gene 85790382 85794399 2099.0 - 0 ENSG00000274343.1 processed_pseudogene AC232323.1 1 OTTHUMG00000187500.2 pseudo_consens +58690 chr8 HAVANA gene 85802574 85806435 1937.0 - 0 ENSG00000270416.2 processed_pseudogene REXO1L4P 1 OTTHUMG00000187498.2 pseudo_consens +58691 chr8 HAVANA gene 85814767 85818783 2098.0 - 0 ENSG00000277436.1 processed_pseudogene REXO1L5P 1 OTTHUMG00000187497.2 pseudo_consens +58692 chr8 HAVANA gene 85826865 85828467 1603.0 - 0 ENSG00000277422.1 transcribed_processed_pseudogene REXO1L6P 1 OTTHUMG00000184704.3 pseudo_consens +58693 chr8 HAVANA gene 85851446 85861562 1661.0 - 0 ENSG00000285768.1 lincRNA AC232323.2 2 OTTHUMG00000192851.1 +58694 chr8 HAVANA gene 85833377 85951083 4740.0 + 0 ENSG00000253154.2 processed_transcript AC100801.1 2 OTTHUMG00000163604.3 +58695 chr8 HAVANA gene 86016819 86017126 308.0 + 0 ENSG00000227753.3 processed_pseudogene AC023194.1 1 OTTHUMG00000158662.1 pseudo_consens,overlapping_locus +58696 chr8 HAVANA gene 86043102 86043507 406.0 + 0 ENSG00000243761.1 processed_pseudogene AC023194.2 1 OTTHUMG00000158663.1 pseudo_consens,overlapping_locus +58697 chr8 HAVANA gene 86048373 86088621 1662.0 - 0 ENSG00000147613.7 protein_coding PSKH2 2 OTTHUMG00000163638.1 +58698 chr8 HAVANA gene 86098965 86154225 502.0 - 0 ENSG00000253675.1 antisense AC023194.3 1 OTTHUMG00000163648.2 +58699 chr8 HAVANA gene 85987323 86154228 3010.0 + 0 ENSG00000147614.3 protein_coding ATP6V0D2 2 OTTHUMG00000163637.5 overlapping_locus +58700 chr8 HAVANA gene 86180418 86212236 501.0 + 0 ENSG00000253699.1 antisense AC084128.1 2 OTTHUMG00000163662.1 +58701 chr8 HAVANA gene 86214052 86321146 2246.0 - 0 ENSG00000164893.8 protein_coding SLC7A13 2 OTTHUMG00000163663.1 +58702 chr8 HAVANA gene 86333274 86343314 1673.0 - 0 ENSG00000254231.2 processed_transcript AC103760.1 2 OTTHUMG00000163689.2 +58703 chr8 HAVANA gene 86342738 86478420 6336.0 + 0 ENSG00000123124.13 protein_coding WWP1 1 OTTHUMG00000163690.3 +58704 chr8 HAVANA gene 86481754 86483002 940.0 - 0 ENSG00000250569.1 processed_pseudogene NTAN1P2 1 OTTHUMG00000160478.1 pseudo_consens,overlapping_locus +58705 chr8 HAVANA gene 86503591 86505061 1471.0 + 0 ENSG00000254088.1 processed_pseudogene SLC2A3P4 1 OTTHUMG00000163721.1 pseudo_consens +58706 chr8 HAVANA gene 86468257 86514357 5646.0 - 0 ENSG00000176623.11 protein_coding RMDN1 1 OTTHUMG00000163692.5 overlapping_locus +58707 chr8 HAVANA gene 86514427 86561498 6745.0 + 0 ENSG00000085719.12 protein_coding CPNE3 2 OTTHUMG00000163725.6 +58708 chr8 HAVANA gene 86593755 86594589 835.0 - 0 ENSG00000253292.1 processed_pseudogene MIOXP1 1 OTTHUMG00000163739.1 pseudo_consens,overlapping_locus +58709 chr8 HAVANA gene 86657388 86660293 2906.0 - 0 ENSG00000205333.5 processed_pseudogene GOLGA2P1 1 OTTHUMG00000160480.2 pseudo_consens,overlapping_locus +58710 chr8 HAVANA gene 86660525 86661922 900.0 - 0 ENSG00000233915.4 processed_pseudogene UBE2Q2P10 1 OTTHUMG00000160482.2 pseudo_consens,overlapping_locus +58711 chr8 HAVANA gene 86553977 86743675 5025.0 - 0 ENSG00000170289.12 protein_coding CNGB3 1 OTTHUMG00000163738.2 overlapping_locus +58712 chr8 HAVANA gene 86707547 86765023 804.0 + 0 ENSG00000254115.1 antisense AC090572.3 1 OTTHUMG00000163740.1 +58713 chr8 HAVANA gene 86776479 86776638 160.0 - 0 ENSG00000253568.1 processed_pseudogene AC090572.1 2 OTTHUMG00000163742.1 +58714 chr8 HAVANA gene 86765935 86818558 761.0 + 0 ENSG00000253778.1 lincRNA AC090572.2 2 OTTHUMG00000163741.1 +58715 chr8 HAVANA gene 87575598 87576508 911.0 - 0 ENSG00000253401.1 processed_pseudogene VTA1P2 1 OTTHUMG00000163765.1 pseudo_consens,overlapping_locus +58716 chr8 HAVANA gene 87598462 87601634 3173.0 - 0 ENSG00000251563.1 processed_pseudogene IARS2P1 1 OTTHUMG00000160488.1 pseudo_consens,overlapping_locus +58717 chr8 HAVANA gene 86866442 87615219 2584.0 + 0 ENSG00000176571.11 protein_coding CNBD1 2 OTTHUMG00000163743.5 +58718 chr8 HAVANA gene 87540835 87755718 2910.0 - 0 ENSG00000253500.5 antisense AF121898.1 2 OTTHUMG00000163764.2 overlapping_locus +58719 chr8 HAVANA gene 87788562 87789688 1127.0 - 0 ENSG00000254376.2 processed_pseudogene SOX5P1 1 OTTHUMG00000163766.2 pseudo_consens +58720 chr8 HAVANA gene 87867601 87868607 1007.0 + 0 ENSG00000273978.1 unprocessed_pseudogene AC005066.1 2 OTTHUMG00000187730.1 +58721 chr8 HAVANA gene 87870743 87874068 3326.0 - 0 ENSG00000176566.4 protein_coding DCAF4L2 2 OTTHUMG00000163767.1 retrogene +58722 chr8 HAVANA gene 87974165 88019113 647.0 + 0 ENSG00000253171.1 antisense AC037450.1 2 OTTHUMG00000163768.1 +58723 chr8 HAVANA gene 88032009 88328025 12115.0 - 0 ENSG00000156103.15 protein_coding MMP16 2 OTTHUMG00000163769.4 +58724 chr8 ENSEMBL gene 88396437 88396547 111.0 - 0 ENSG00000251904.1 rRNA_pseudogene RNA5SP272 3 +58725 chr8 HAVANA gene 88485110 88486094 856.0 + 0 ENSG00000250962.1 processed_pseudogene AC090568.1 1 OTTHUMG00000160420.1 pseudo_consens,overlapping_locus +58726 chr8 HAVANA gene 88808318 88808908 591.0 - 0 ENSG00000271156.1 lincRNA AC090578.2 2 OTTHUMG00000185114.1 +58727 chr8 HAVANA gene 88326836 88887323 5465.0 + 0 ENSG00000253553.6 antisense AC090578.1 2 OTTHUMG00000163770.3 overlapping_locus +58728 chr8 HAVANA gene 89243401 89243793 393.0 - 0 ENSG00000253621.1 processed_pseudogene RPSAP74 1 OTTHUMG00000163773.1 pseudo_consens +58729 chr8 HAVANA gene 89412621 89415071 1454.0 - 0 ENSG00000248231.1 processed_pseudogene KRT8P4 1 OTTHUMG00000160489.1 pseudo_consens +58730 chr8 HAVANA gene 89609409 89757727 7481.0 - 0 ENSG00000251136.8 lincRNA AF117829.1 1 OTTHUMG00000163788.3 +58731 chr8 HAVANA gene 89757747 89791063 3117.0 + 0 ENSG00000104312.7 protein_coding RIPK2 2 OTTHUMG00000163809.2 +58732 chr8 HAVANA gene 89823548 89823802 255.0 - 0 ENSG00000253349.1 processed_pseudogene COX6B1P6 1 OTTHUMG00000163810.1 pseudo_consens +58733 chr8 HAVANA gene 89826593 89833564 361.0 + 0 ENSG00000275103.1 unprocessed_pseudogene AF117829.2 2 OTTHUMG00000187746.1 +58734 chr8 ENSEMBL gene 89900721 89900824 104.0 - 0 ENSG00000207359.1 snRNA RNU6-925P 3 +58735 chr8 HAVANA gene 89901849 89927888 4691.0 + 0 ENSG00000164823.10 protein_coding OSGIN2 2 OTTHUMG00000163811.3 +58736 chr8 HAVANA gene 89933336 90003228 6156.0 - 0 ENSG00000104320.13 protein_coding NBN 1 OTTHUMG00000153546.7 +58737 chr8 HAVANA gene 90001405 90052092 3507.0 + 0 ENSG00000104325.6 protein_coding DECR1 1 OTTHUMG00000163829.3 +58738 chr8 HAVANA gene 90058608 90095475 7138.0 - 0 ENSG00000104327.7 protein_coding CALB1 1 OTTHUMG00000134314.4 +58739 chr8 ENSEMBL gene 90511128 90511240 113.0 + 0 ENSG00000199354.1 rRNA_pseudogene RNA5SP273 3 +58740 chr8 HAVANA gene 90221488 90569318 1354.0 + 0 ENSG00000253394.5 lincRNA LINC00534 2 OTTHUMG00000163968.1 +58741 chr8 HAVANA gene 90592804 90606065 738.0 - 0 ENSG00000253799.1 lincRNA LINC01030 1 OTTHUMG00000163970.1 overlapping_locus +58742 chr8 HAVANA gene 90534611 90620070 578.0 - 0 ENSG00000254180.1 lincRNA AB015752.1 2 OTTHUMG00000163969.1 overlapping_locus +58743 chr8 HAVANA gene 90646441 90656598 3808.0 + 0 ENSG00000246792.2 antisense AC106038.1 1 OTTHUMG00000164007.1 +58744 chr8 HAVANA gene 90701082 90701876 568.0 + 0 ENSG00000254182.1 processed_pseudogene AC106038.2 1 OTTHUMG00000164008.1 pseudo_consens +58745 chr8 HAVANA gene 90621995 90791632 5870.0 - 0 ENSG00000180694.13 protein_coding TMEM64 2 OTTHUMG00000157185.5 +58746 chr8 HAVANA gene 90806474 90859240 833.0 - 0 ENSG00000254251.1 antisense AC103770.1 2 OTTHUMG00000164010.1 +58747 chr8 HAVANA gene 90791550 90959408 6408.0 + 0 ENSG00000123119.11 protein_coding NECAB1 2 OTTHUMG00000164009.1 +58748 chr8 HAVANA gene 90958637 90985257 894.0 - 0 ENSG00000253250.2 protein_coding C8orf88 1 OTTHUMG00000164011.2 +58749 chr8 HAVANA gene 91016588 91018655 398.0 + 0 ENSG00000253358.1 antisense AC087439.1 1 OTTHUMG00000164020.1 +58750 chr8 HAVANA gene 90993796 91041064 3066.0 - 0 ENSG00000155099.7 protein_coding PIP4P2 2 OTTHUMG00000164019.2 +58751 chr8 HAVANA gene 91042690 91044762 616.0 - 0 ENSG00000254219.1 processed_transcript AC087439.2 2 OTTHUMG00000164021.1 +58752 chr8 HAVANA gene 91059909 91070189 6009.0 - 0 ENSG00000253738.1 antisense OTUD6B-AS1 1 OTTHUMG00000164022.1 +58753 chr8 HAVANA gene 91070196 91087095 3977.0 + 0 ENSG00000155100.10 protein_coding OTUD6B 1 OTTHUMG00000150758.4 +58754 chr8 HAVANA gene 91157285 91158748 1464.0 + 0 ENSG00000253525.1 processed_pseudogene AC104966.1 1 OTTHUMG00000164061.1 pseudo_consens,overlapping_locus +58755 chr8 ENSEMBL gene 91205485 91205559 75.0 + 0 ENSG00000266194.1 miRNA MIR4661 3 +58756 chr8 HAVANA gene 91101832 91219236 3056.0 + 0 ENSG00000214954.8 protein_coding LRRC69 1 OTTHUMG00000164023.6 ncRNA_host,overlapping_locus +58757 chr8 HAVANA gene 91209494 91398152 6273.0 + 0 ENSG00000147606.8 protein_coding SLC26A7 2 OTTHUMG00000164062.2 overlapping_locus +58758 chr8 ENSEMBL gene 91594965 91595241 277.0 + 0 ENSG00000200151.1 misc_RNA RN7SKP231 3 +58759 chr8 HAVANA gene 91542924 91907619 834.0 - 0 ENSG00000253901.1 lincRNA AC103409.1 2 OTTHUMG00000164063.1 +58760 chr8 HAVANA gene 91909738 91910167 430.0 - 0 ENSG00000271202.1 processed_pseudogene PRR13P7 1 OTTHUMG00000184728.1 pseudo_consens +58761 chr8 HAVANA gene 91917507 91917918 412.0 + 0 ENSG00000229182.3 processed_pseudogene MRPS16P1 1 OTTHUMG00000164065.2 pseudo_consens +58762 chr8 HAVANA gene 91975908 91977418 410.0 + 0 ENSG00000253576.1 antisense AF181450.1 2 OTTHUMG00000164152.1 +58763 chr8 HAVANA gene 91954967 92103286 13535.0 - 0 ENSG00000079102.16 protein_coding RUNX1T1 2 OTTHUMG00000164066.6 +58764 chr8 HAVANA gene 92144088 92144435 348.0 - 0 ENSG00000233778.3 processed_pseudogene AC104339.1 1 OTTHUMG00000158664.1 pseudo_consens +58765 chr8 HAVANA gene 92351912 92352148 237.0 - 0 ENSG00000253118.1 processed_pseudogene AC022695.1 1 OTTHUMG00000164153.1 pseudo_consens +58766 chr8 HAVANA gene 92403545 92413645 768.0 - 0 ENSG00000253682.1 lincRNA AC022695.2 2 OTTHUMG00000164154.1 +58767 chr8 HAVANA gene 92420850 92421798 478.0 - 0 ENSG00000253749.1 lincRNA AC022695.3 1 OTTHUMG00000164155.1 +58768 chr8 HAVANA gene 92460539 92655569 2016.0 - 0 ENSG00000253634.2 lincRNA AC091096.1 2 OTTHUMG00000164157.2 +58769 chr8 HAVANA gene 92668836 92679594 1013.0 + 0 ENSG00000253177.1 lincRNA AC104211.1 1 OTTHUMG00000164158.1 +58770 chr8 HAVANA gene 92723024 92725111 270.0 - 0 ENSG00000254020.1 lincRNA AC104211.3 2 OTTHUMG00000164160.1 overlapping_locus +58771 chr8 HAVANA gene 92765702 92776451 436.0 + 0 ENSG00000253577.1 lincRNA AC104211.2 1 OTTHUMG00000164161.1 +58772 chr8 HAVANA gene 92699742 92879502 8071.0 - 0 ENSG00000248858.7 processed_transcript FLJ46284 2 OTTHUMG00000164159.1 overlapping_locus +58773 chr8 HAVANA gene 92882984 92965645 947.0 + 0 ENSG00000253197.5 antisense AC117834.1 2 OTTHUMG00000164195.1 +58774 chr8 HAVANA gene 92972575 92974738 2164.0 + 0 ENSG00000251347.2 processed_pseudogene IRF5P1 1 OTTHUMG00000160421.2 pseudo_consens +58775 chr8 HAVANA gene 92883530 93017673 6724.0 - 0 ENSG00000205133.11 protein_coding TRIQK 2 OTTHUMG00000164162.5 +58776 chr8 ENSEMBL gene 93029751 93029839 89.0 + 0 ENSG00000277063.1 miRNA MIR8084 3 +58777 chr8 HAVANA gene 93134095 93166850 649.0 - 0 ENSG00000279847.3 lincRNA C8orf87 2 OTTHUMG00000164196.1 +58778 chr8 HAVANA gene 93229659 93229916 258.0 + 0 ENSG00000268080.2 processed_pseudogene AC016885.3 2 OTTHUMG00000187193.1 +58779 chr8 HAVANA gene 93215925 93234878 532.0 - 0 ENSG00000253960.1 lincRNA AC016885.1 2 OTTHUMG00000164235.1 overlapping_locus +58780 chr8 HAVANA gene 93259667 93297976 261.0 + 0 ENSG00000254089.1 lincRNA AC016885.2 2 OTTHUMG00000164236.1 +58781 chr8 ENSEMBL gene 93441277 93441384 108.0 + 0 ENSG00000222416.1 rRNA_pseudogene RNA5SP274 3 +58782 chr8 HAVANA gene 93646066 93647092 1027.0 + 0 ENSG00000253781.1 processed_pseudogene ZNF317P1 2 OTTHUMG00000164237.1 +58783 chr8 HAVANA gene 93213302 93700433 2595.0 - 0 ENSG00000246662.6 antisense LINC00535 2 OTTHUMG00000164234.1 overlapping_locus +58784 chr8 HAVANA gene 93715378 93716113 736.0 - 0 ENSG00000271971.1 antisense AC120053.1 2 OTTHUMG00000185503.1 +58785 chr8 HAVANA gene 93719574 93721167 939.0 + 0 ENSG00000253854.1 antisense AC010834.3 2 OTTHUMG00000164316.1 overlapping_locus +58786 chr8 HAVANA gene 93698561 93731527 7423.0 + 0 ENSG00000188343.12 protein_coding FAM92A 1 OTTHUMG00000164238.5 overlapping_locus +58787 chr8 HAVANA gene 93733216 93734022 696.0 + 0 ENSG00000253722.1 antisense AC010834.1 2 OTTHUMG00000164318.1 +58788 chr8 HAVANA gene 93740121 93740773 653.0 + 0 ENSG00000279331.1 TEC RBM12B-AS1 2 OTTHUMG00000187194.1 +58789 chr8 HAVANA gene 93729356 93741017 7618.0 - 0 ENSG00000183808.11 protein_coding RBM12B 2 OTTHUMG00000164317.4 +58790 chr8 HAVANA gene 93741193 93744534 530.0 + 0 ENSG00000253848.1 antisense AC010834.2 1 OTTHUMG00000164319.1 +58791 chr8 HAVANA gene 93754844 93819234 8281.0 + 0 ENSG00000164953.15 protein_coding TMEM67 2 OTTHUMG00000153119.5 +58792 chr8 HAVANA gene 93834454 93846743 528.0 - 0 ENSG00000254057.1 lincRNA AC084346.1 2 OTTHUMG00000164354.1 +58793 chr8 HAVANA gene 93849561 93850075 515.0 + 0 ENSG00000254387.1 processed_pseudogene MYL12AP1 1 OTTHUMG00000164355.2 pseudo_consens +58794 chr8 ENSEMBL gene 93916022 93916119 98.0 - 0 ENSG00000284288.1 miRNA MIR378D2 3 +58795 chr8 HAVANA gene 93915734 93916682 949.0 - 0 ENSG00000264448.5 lincRNA AC084346.2 2 OTTHUMG00000185504.1 ncRNA_host +58796 chr8 HAVANA gene 93857807 93926066 5603.0 + 0 ENSG00000164951.15 protein_coding PDP1 2 OTTHUMG00000164356.4 +58797 chr8 HAVANA gene 93939364 93942877 686.0 - 0 ENSG00000251234.1 processed_pseudogene PSMA2P2 1 OTTHUMG00000160491.1 pseudo_consens +58798 chr8 HAVANA gene 93957338 93957691 354.0 - 0 ENSG00000240509.1 processed_pseudogene RPL34P18 1 OTTHUMG00000158665.1 pseudo_consens +58799 chr8 HAVANA gene 93974671 93974776 106.0 - 0 ENSG00000275386.1 unprocessed_pseudogene AC105081.1 2 OTTHUMG00000187747.1 +58800 chr8 HAVANA gene 94097764 94104322 668.0 - 0 ENSG00000253585.1 lincRNA AP003351.1 1 OTTHUMG00000164390.1 +58801 chr8 HAVANA gene 94201913 94203052 833.0 - 0 ENSG00000249510.1 processed_pseudogene AP003478.1 1 OTTHUMG00000160493.1 pseudo_consens,overlapping_locus +58802 chr8 HAVANA gene 94127171 94217303 3901.0 - 0 ENSG00000079112.9 protein_coding CDH17 1 OTTHUMG00000164391.2 overlapping_locus +58803 chr8 HAVANA gene 94249253 94262350 2648.0 - 0 ENSG00000164949.7 protein_coding GEM 2 OTTHUMG00000164392.4 +58804 chr8 HAVANA gene 94352923 94353653 731.0 + 0 ENSG00000244217.1 processed_pseudogene RPS4XP10 1 OTTHUMG00000158666.1 pseudo_consens +58805 chr8 HAVANA gene 94427712 94429888 2177.0 - 0 ENSG00000280123.1 TEC AC023632.6 2 OTTHUMG00000164425.1 overlapping_locus +58806 chr8 HAVANA gene 94372170 94436952 3597.0 - 0 ENSG00000265817.2 protein_coding FSBP 2 OTTHUMG00000178341.1 overlapping_locus +58807 chr8 HAVANA gene 94371960 94475109 5313.0 - 0 ENSG00000197275.13 protein_coding RAD54B 1 OTTHUMG00000133658.6 overlapping_locus +58808 chr8 HAVANA gene 94533628 94534391 491.0 + 0 ENSG00000254315.1 antisense AC023632.5 2 OTTHUMG00000164452.1 +58809 chr8 HAVANA gene 94487693 94553529 10771.0 - 0 ENSG00000164944.11 protein_coding VIRMA 1 OTTHUMG00000164426.2 +58810 chr8 HAVANA gene 94565036 94565715 375.0 + 0 ENSG00000253175.1 processed_pseudogene AC023632.1 1 OTTHUMG00000164454.1 pseudo_consens,overlapping_locus +58811 chr8 HAVANA gene 94553722 94569745 1789.0 + 0 ENSG00000253704.1 lincRNA AC023632.2 1 OTTHUMG00000164453.1 overlapping_locus +58812 chr8 HAVANA gene 94590115 94590259 145.0 + 0 ENSG00000254190.1 processed_pseudogene AC023632.3 2 OTTHUMG00000164455.1 +58813 chr8 HAVANA gene 94594411 94594601 191.0 + 0 ENSG00000254283.1 processed_pseudogene AC023632.4 1 OTTHUMG00000164456.1 pseudo_consens +58814 chr8 HAVANA gene 94637285 94639467 2183.0 - 0 ENSG00000261437.1 antisense AC108860.2 2 OTTHUMG00000173368.1 +58815 chr8 ENSEMBL gene 94655911 94656208 298.0 + 0 ENSG00000274701.1 misc_RNA RF00017 3 +58816 chr8 HAVANA gene 94688228 94688610 383.0 + 0 ENSG00000241003.1 processed_pseudogene AC108860.1 1 OTTHUMG00000158667.1 pseudo_consens,overlapping_locus +58817 chr8 HAVANA gene 94641074 94707466 4875.0 + 0 ENSG00000104413.16 protein_coding ESRP1 1 OTTHUMG00000164587.3 ncRNA_host,overlapping_locus +58818 chr8 HAVANA gene 94708952 94709244 293.0 - 0 ENSG00000253429.1 processed_pseudogene AP005660.1 1 OTTHUMG00000164588.1 pseudo_consens +58819 chr8 ENSEMBL gene 94713715 94713812 98.0 - 0 ENSG00000199701.1 misc_RNA RF00019 3 +58820 chr8 HAVANA gene 94791643 94793106 1091.0 - 0 ENSG00000254307.2 antisense AP003692.1 2 OTTHUMG00000164590.2 +58821 chr8 HAVANA gene 94719703 94793836 7136.0 + 0 ENSG00000156162.16 protein_coding DPY19L4 1 OTTHUMG00000164589.3 +58822 chr8 HAVANA gene 94813311 94881746 7866.0 + 0 ENSG00000164941.13 protein_coding INTS8 1 OTTHUMG00000164695.3 +58823 chr8 HAVANA gene 94884609 94885070 462.0 + 0 ENSG00000272509.1 antisense AC087752.4 2 OTTHUMG00000185506.1 +58824 chr8 HAVANA gene 94891239 94892107 558.0 + 0 ENSG00000243979.2 processed_pseudogene AC087752.1 1 OTTHUMG00000160422.1 pseudo_consens +58825 chr8 HAVANA gene 94879770 94896678 4397.0 - 0 ENSG00000175305.17 protein_coding CCNE2 2 OTTHUMG00000164696.1 +58826 chr8 HAVANA gene 94925972 94949411 5676.0 - 0 ENSG00000164938.13 protein_coding TP53INP1 2 OTTHUMG00000164697.1 +58827 chr8 HAVANA gene 94950037 94951396 709.0 + 0 ENSG00000253878.5 sense_intronic AC087752.3 2 OTTHUMG00000164729.1 overlapping_locus +58828 chr8 HAVANA gene 94974573 94974853 281.0 - 0 ENSG00000253528.2 processed_pseudogene AC087752.2 2 OTTHUMG00000164730.2 +58829 chr8 ENSEMBL gene 95055214 95055320 107.0 + 0 ENSG00000200525.1 snRNA RNU6-1209P 3 +58830 chr8 ENSEMBL gene 95072914 95072993 80.0 + 0 ENSG00000283522.1 miRNA MIR3150A 3 +58831 chr8 ENSEMBL gene 95072911 95072996 86.0 - 0 ENSG00000284147.1 miRNA MIR3150B 3 +58832 chr8 HAVANA gene 95066808 95073182 2886.0 - 0 ENSG00000245080.7 antisense MIR3150BHG 1 OTTHUMG00000164658.3 ncRNA_host,overlapping_locus +58833 chr8 HAVANA gene 95071732 95087924 794.0 - 0 ENSG00000254248.1 antisense AC068189.1 2 OTTHUMG00000164704.1 ncRNA_host,overlapping_locus +58834 chr8 HAVANA gene 94895767 95116455 6406.0 + 0 ENSG00000156170.12 protein_coding NDUFAF6 1 OTTHUMG00000150173.5 ncRNA_host,overlapping_locus +58835 chr8 HAVANA gene 95133804 95156684 3137.0 + 0 ENSG00000175895.3 protein_coding PLEKHF2 2 OTTHUMG00000164660.1 +58836 chr8 HAVANA gene 95207007 95216374 519.0 - 0 ENSG00000253351.1 lincRNA LINC01298 2 OTTHUMG00000164662.1 +58837 chr8 HAVANA gene 95244919 95269201 3334.0 - 0 ENSG00000156172.5 protein_coding C8orf37 2 OTTHUMG00000164663.1 +58838 chr8 HAVANA gene 95403802 95403894 93.0 + 0 ENSG00000253945.1 processed_pseudogene AC024995.1 1 OTTHUMG00000164664.1 pseudo_consens,overlapping_locus +58839 chr8 HAVANA gene 95505406 95527524 2125.0 + 0 ENSG00000253872.1 lincRNA AC083836.1 2 OTTHUMG00000164665.1 overlapping_locus +58840 chr8 ENSEMBL gene 95599114 95599219 106.0 + 0 ENSG00000202112.1 snRNA RNU6-690P 3 +58841 chr8 HAVANA gene 95204456 95810136 1445.0 + 0 ENSG00000253773.2 lincRNA C8orf37-AS1 2 OTTHUMG00000164661.1 ncRNA_host,overlapping_locus +58842 chr8 HAVANA gene 95947781 95948233 453.0 - 0 ENSG00000254079.1 processed_pseudogene AC012339.2 2 OTTHUMG00000164666.1 +58843 chr8 HAVANA gene 95986108 95993103 941.0 - 0 ENSG00000248762.2 lincRNA AC012339.1 2 OTTHUMG00000164667.1 +58844 chr8 HAVANA gene 96068729 96069681 953.0 - 0 ENSG00000183663.6 processed_pseudogene AC007992.1 1 OTTHUMG00000159992.1 pseudo_consens +58845 chr8 HAVANA gene 96126967 96127801 835.0 - 0 ENSG00000271349.1 processed_pseudogene AC007992.2 1 OTTHUMG00000184720.1 pseudo_consens +58846 chr8 HAVANA gene 96140572 96140944 373.0 - 0 ENSG00000270131.1 lincRNA AP003465.2 2 OTTHUMG00000184134.1 +58847 chr8 HAVANA gene 96142330 96160792 3701.0 - 0 ENSG00000156466.9 protein_coding GDF6 2 OTTHUMG00000164710.3 +58848 chr8 HAVANA gene 96225920 96235634 9715.0 - 0 ENSG00000156467.9 protein_coding UQCRB 1 OTTHUMG00000164711.2 +58849 chr8 HAVANA gene 96235427 96238034 382.0 + 0 ENSG00000254224.1 antisense AP003465.1 2 OTTHUMG00000164712.1 +58850 chr8 HAVANA gene 96239398 96261610 1801.0 - 0 ENSG00000156469.8 protein_coding MTERF3 1 OTTHUMG00000164713.2 +58851 chr8 ENSEMBL gene 96309221 96309322 102.0 - 0 ENSG00000199732.1 misc_RNA RF00019 3 +58852 chr8 HAVANA gene 96261715 96336995 6295.0 + 0 ENSG00000156471.12 protein_coding PTDSS1 2 OTTHUMG00000164687.2 +58853 chr8 HAVANA gene 96371865 96387438 1046.0 - 0 ENSG00000253105.5 lincRNA AP003548.1 1 OTTHUMG00000164715.1 +58854 chr8 ENSEMBL gene 96431054 96431160 107.0 - 0 ENSG00000202095.1 snRNA RNU6-1172P 3 +58855 chr8 HAVANA gene 96493351 96611780 4536.0 + 0 ENSG00000169439.11 protein_coding SDC2 1 OTTHUMG00000164689.5 +58856 chr8 HAVANA gene 97132835 97133379 545.0 - 0 ENSG00000272249.1 antisense AP003117.2 2 OTTHUMG00000185508.1 overlapping_locus +58857 chr8 HAVANA gene 97144170 97144723 554.0 + 0 ENSG00000270077.1 sense_intronic AP003117.1 2 OTTHUMG00000184092.1 overlapping_locus +58858 chr8 HAVANA gene 96645227 97149654 3457.0 + 0 ENSG00000104324.15 protein_coding CPQ 1 OTTHUMG00000164690.4 overlapping_locus +58859 chr8 HAVANA gene 97241742 97242204 463.0 - 0 ENSG00000260640.1 lincRNA AP003115.1 2 OTTHUMG00000174460.1 overlapping_locus +58860 chr8 HAVANA gene 97273474 97277964 4491.0 - 0 ENSG00000180543.4 protein_coding TSPYL5 2 OTTHUMG00000164857.3 overlapping_locus,retrogene +58861 chr8 ENSEMBL gene 97358265 97358478 214.0 + 0 ENSG00000207215.2 snoRNA SNORD3H 3 +58862 chr8 HAVANA gene 97624203 97625079 877.0 - 0 ENSG00000213750.4 processed_pseudogene AP002982.1 1 OTTHUMG00000158668.1 pseudo_consens +58863 chr8 HAVANA gene 97644179 97728770 6391.0 + 0 ENSG00000147649.9 protein_coding MTDH 1 OTTHUMG00000164692.5 +58864 chr8 ENSEMBL gene 97772313 97772425 113.0 + 0 ENSG00000202399.1 misc_RNA RF00019 3 +58865 chr8 HAVANA gene 97788210 97788357 148.0 - 0 ENSG00000270682.1 processed_pseudogene AP003357.1 1 OTTHUMG00000184717.1 pseudo_consens +58866 chr8 HAVANA gene 97775057 97853013 3197.0 + 0 ENSG00000104341.16 protein_coding LAPTM4B 2 OTTHUMG00000164740.4 +58867 chr8 HAVANA gene 97853021 97853253 233.0 - 0 ENSG00000270861.1 processed_pseudogene AP002906.1 1 OTTHUMG00000184709.1 pseudo_consens +58868 chr8 HAVANA gene 97858049 97858947 252.0 - 0 ENSG00000253639.1 processed_pseudogene SUMO2P18 1 OTTHUMG00000164741.1 pseudo_consens +58869 chr8 HAVANA gene 97865054 97865485 432.0 + 0 ENSG00000243504.1 processed_pseudogene RPS23P1 1 OTTHUMG00000158669.1 pseudo_consens +58870 chr8 HAVANA gene 97868840 98036716 6933.0 + 0 ENSG00000132561.13 protein_coding MATN2 1 OTTHUMG00000164795.3 +58871 chr8 ENSEMBL gene 98042086 98042217 132.0 - 0 ENSG00000207067.1 snoRNA SNORA72 3 +58872 chr8 HAVANA gene 98041726 98044121 1989.0 + 0 ENSG00000245970.2 antisense AP003352.1 2 OTTHUMG00000164797.1 +58873 chr8 HAVANA gene 98024851 98046469 4027.0 - 0 ENSG00000156482.10 protein_coding RPL30 2 OTTHUMG00000164796.4 ncRNA_host +58874 chr8 ENSEMBL gene 98048856 98048962 107.0 + 0 ENSG00000252755.1 snRNA RNU6-703P 3 +58875 chr8 HAVANA gene 98064311 98093610 1761.0 + 0 ENSG00000177459.10 protein_coding ERICH5 2 OTTHUMG00000164819.1 +58876 chr8 HAVANA gene 98102344 98117241 1567.0 - 0 ENSG00000132541.10 protein_coding RIDA 2 OTTHUMG00000164670.4 +58877 chr8 HAVANA gene 98117297 98159834 4852.0 + 0 ENSG00000104356.10 protein_coding POP1 2 OTTHUMG00000164635.2 +58878 chr8 ENSEMBL gene 98192205 98192313 109.0 - 0 ENSG00000252558.1 snRNA RNU6-914P 3 +58879 chr8 HAVANA gene 98189833 98294393 5599.0 - 0 ENSG00000104361.9 protein_coding NIPAL2 2 OTTHUMG00000164668.2 ncRNA_host +58880 chr8 HAVANA gene 98391401 98391514 114.0 - 0 ENSG00000278914.1 TEC AP003355.3 2 OTTHUMG00000173494.1 +58881 chr8 HAVANA gene 98412882 98413784 587.0 - 0 ENSG00000253468.1 processed_pseudogene AP003355.1 1 OTTHUMG00000164650.4 pseudo_consens,overlapping_locus +58882 chr8 HAVANA gene 98427022 98432848 5348.0 + 0 ENSG00000156486.7 protein_coding KCNS2 2 OTTHUMG00000044337.3 retrogene +58883 chr8 HAVANA gene 98436669 98439290 2622.0 + 0 ENSG00000272321.1 antisense AP003355.2 2 OTTHUMG00000185509.1 +58884 chr8 ENSEMBL gene 98462944 98463050 107.0 - 0 ENSG00000207378.1 snRNA RNU6-748P 3 +58885 chr8 HAVANA gene 98603253 98606340 301.0 + 0 ENSG00000253911.1 antisense AP003467.1 2 OTTHUMG00000164864.1 +58886 chr8 HAVANA gene 98633547 98633865 319.0 + 0 ENSG00000254112.1 processed_pseudogene AP003467.2 1 OTTHUMG00000164639.2 pseudo_consens +58887 chr8 HAVANA gene 98782055 98782628 574.0 + 0 ENSG00000240870.2 processed_pseudogene RPL19P14 1 OTTHUMG00000158670.2 pseudo_consens +58888 chr8 HAVANA gene 98904603 98905671 1069.0 - 0 ENSG00000253415.1 processed_pseudogene AC016877.2 1 OTTHUMG00000164652.3 pseudo_consens,overlapping_locus +58889 chr8 HAVANA gene 98906260 98906517 258.0 - 0 ENSG00000254312.1 processed_pseudogene MRPL57P7 2 OTTHUMG00000164653.2 overlapping_locus +58890 chr8 ENSEMBL gene 98921233 98921550 318.0 - 0 ENSG00000223281.1 misc_RNA RN7SKP85 3 +58891 chr8 HAVANA gene 98371228 98942827 12597.0 - 0 ENSG00000104375.16 protein_coding STK3 1 OTTHUMG00000164651.9 ncRNA_host,overlapping_locus +58892 chr8 HAVANA gene 98943595 98944098 504.0 + 0 ENSG00000271930.1 lincRNA AC016877.3 2 OTTHUMG00000185510.1 +58893 chr8 HAVANA gene 98944403 98952104 2930.0 + 0 ENSG00000164920.9 protein_coding OSR2 2 OTTHUMG00000164640.5 +58894 chr8 HAVANA gene 98961428 98968284 464.0 + 0 ENSG00000229625.3 lincRNA AC016877.1 2 OTTHUMG00000164654.1 +58895 chr8 HAVANA gene 99003407 99003842 436.0 - 0 ENSG00000253180.1 processed_pseudogene AC104986.1 1 OTTHUMG00000164698.2 pseudo_consens,overlapping_locus +58896 chr8 HAVANA gene 98996763 99013044 380.0 - 0 ENSG00000253948.1 lincRNA AC104986.2 2 OTTHUMG00000164865.1 overlapping_locus +58897 chr8 HAVANA gene 99091738 99094060 493.0 - 0 ENSG00000253562.1 antisense AC107909.2 1 OTTHUMG00000164699.1 +58898 chr8 HAVANA gene 99119352 99120581 595.0 + 0 ENSG00000253532.1 sense_intronic AC107909.1 1 OTTHUMG00000164700.1 overlapping_locus +58899 chr8 HAVANA gene 99233048 99234459 1412.0 - 0 ENSG00000236583.1 processed_pseudogene AP004290.1 1 OTTHUMG00000140386.1 pseudo_consens +58900 chr8 HAVANA gene 99340305 99341761 1457.0 - 0 ENSG00000237704.1 processed_pseudogene AP004289.2 1 OTTHUMG00000140384.1 pseudo_consens +58901 chr8 HAVANA gene 99346052 99348256 2205.0 - 0 ENSG00000225017.1 processed_pseudogene AP004289.1 1 OTTHUMG00000140387.1 pseudo_consens +58902 chr8 ENSEMBL gene 99527826 99527927 102.0 + 0 ENSG00000206699.1 misc_RNA RF00019 3 +58903 chr8 ENSEMBL gene 99536636 99536730 95.0 - 0 ENSG00000207804.1 miRNA MIR599 3 +58904 chr8 ENSEMBL gene 99536786 99536861 76.0 - 0 ENSG00000216069.1 miRNA MIR875 3 +58905 chr8 ENSEMBL gene 99613783 99614081 299.0 - 0 ENSG00000243254.3 misc_RNA RN7SL350P 3 +58906 chr8 HAVANA gene 99695957 99698017 2061.0 + 0 ENSG00000235683.1 processed_pseudogene AC018442.1 1 OTTHUMG00000140385.1 pseudo_consens,overlapping_locus +58907 chr8 HAVANA gene 99796615 99799187 648.0 - 0 ENSG00000253539.1 antisense AC018442.2 1 OTTHUMG00000164701.1 +58908 chr8 HAVANA gene 99804159 99804341 183.0 - 0 ENSG00000253912.1 processed_pseudogene AC018442.3 2 OTTHUMG00000164702.1 +58909 chr8 HAVANA gene 99013266 99877580 16716.0 + 0 ENSG00000132549.18 protein_coding VPS13B 2 OTTHUMG00000140383.3 ncRNA_host,overlapping_locus +58910 chr8 HAVANA gene 99873200 99894062 3066.0 - 0 ENSG00000164919.10 protein_coding COX6C 2 OTTHUMG00000164703.4 +58911 chr8 ENSEMBL gene 100004583 100004649 67.0 + 0 ENSG00000212414.1 snoRNA SNORD77B 3 +58912 chr8 ENSEMBL gene 100023982 100024084 103.0 - 0 ENSG00000221753.1 miRNA MIR1273A 3 +58913 chr8 HAVANA gene 99960936 100131268 6363.0 - 0 ENSG00000132554.19 protein_coding RGS22 1 OTTHUMG00000164802.6 ncRNA_host +58914 chr8 HAVANA gene 100133360 100145800 3950.0 - 0 ENSG00000156509.13 protein_coding FBXO43 2 OTTHUMG00000164803.2 +58915 chr8 HAVANA gene 100150584 100154002 1711.0 + 0 ENSG00000147669.10 protein_coding POLR2K 2 OTTHUMG00000164705.3 +58916 chr8 ENSEMBL gene 100158868 100158975 108.0 + 0 ENSG00000202310.1 misc_RNA RF00019 3 +58917 chr8 HAVANA gene 100165226 100165478 253.0 - 0 ENSG00000253299.1 processed_pseudogene AC025647.1 1 OTTHUMG00000164872.1 pseudo_consens +58918 chr8 ENSEMBL gene 100185138 100185239 102.0 + 0 ENSG00000199667.1 misc_RNA RF00019 3 +58919 chr8 HAVANA gene 100157906 100259278 5055.0 + 0 ENSG00000104450.12 protein_coding SPAG1 2 OTTHUMG00000164706.3 ncRNA_host +58920 chr8 HAVANA gene 100257060 100336218 6031.0 - 0 ENSG00000034677.12 protein_coding RNF19A 2 OTTHUMG00000164707.7 +58921 chr8 HAVANA gene 100337595 100350707 546.0 + 0 ENSG00000253217.1 lincRNA AP001574.1 2 OTTHUMG00000164738.1 +58922 chr8 ENSEMBL gene 100382763 100382845 83.0 + 0 ENSG00000265599.1 miRNA MIR4471 3 +58923 chr8 HAVANA gene 100381260 100414459 838.0 - 0 ENSG00000253824.1 lincRNA AP003472.1 2 OTTHUMG00000164708.1 +58924 chr8 HAVANA gene 100428834 100430997 743.0 - 0 ENSG00000253842.1 lincRNA AP003472.2 1 OTTHUMG00000164709.1 +58925 chr8 HAVANA gene 100492528 100493713 233.0 + 0 ENSG00000254364.1 antisense AP000424.2 1 OTTHUMG00000164723.1 overlapping_locus +58926 chr8 HAVANA gene 100475675 100501148 742.0 + 0 ENSG00000253666.1 antisense AP000424.1 1 OTTHUMG00000164722.1 overlapping_locus +58927 chr8 HAVANA gene 100550724 100551713 990.0 - 0 ENSG00000251013.1 processed_pseudogene GAPDHP62 1 OTTHUMG00000159995.1 pseudo_consens,overlapping_locus +58928 chr8 HAVANA gene 100509752 100559784 5820.0 - 0 ENSG00000186106.11 protein_coding ANKRD46 2 OTTHUMG00000164724.3 overlapping_locus +58929 chr8 HAVANA gene 100618581 100619993 449.0 + 0 ENSG00000253740.5 antisense AP001205.1 1 OTTHUMG00000164778.1 +58930 chr8 HAVANA gene 100572882 100663415 3149.0 - 0 ENSG00000174226.8 protein_coding SNX31 1 OTTHUMG00000164725.4 +58931 chr8 ENSEMBL gene 100683488 100683574 87.0 + 0 ENSG00000252764.1 snRNA RNU6-1092P 3 +58932 chr8 ENSEMBL gene 100702968 100703024 57.0 - 0 ENSG00000284570.1 miRNA MIR7705 3 +58933 chr8 HAVANA gene 100685816 100722809 4752.0 - 0 ENSG00000070756.15 protein_coding PABPC1 2 OTTHUMG00000164779.3 ncRNA_host +58934 chr8 ENSEMBL gene 100739802 100739927 126.0 - 0 ENSG00000221527.1 snRNA RNU6ATAC41P 3 +58935 chr8 ENSEMBL gene 100755099 100755195 97.0 - 0 ENSG00000202001.2 misc_RNA RF00019 3 +58936 chr8 HAVANA gene 100776512 100776865 354.0 - 0 ENSG00000242399.1 processed_pseudogene RPS20P23 1 OTTHUMG00000158672.2 pseudo_consens +58937 chr8 ENSEMBL gene 100831728 100831860 133.0 - 0 ENSG00000222795.1 snRNA RNU4-83P 3 +58938 chr8 HAVANA gene 100895771 100896118 348.0 + 0 ENSG00000212994.5 processed_pseudogene RPS26P6 2 OTTHUMG00000158673.1 +58939 chr8 ENSEMBL gene 100897853 100898136 284.0 - 0 ENSG00000275041.1 misc_RNA RF00017 3 +58940 chr8 HAVANA gene 100913247 100914388 1142.0 - 0 ENSG00000260368.1 sense_overlapping AC027373.1 2 OTTHUMG00000172766.2 +58941 chr8 HAVANA gene 100916525 100953388 8555.0 - 0 ENSG00000164924.17 protein_coding YWHAZ 1 OTTHUMG00000134291.7 +58942 chr8 ENSEMBL gene 100957883 100958180 298.0 + 0 ENSG00000242315.3 misc_RNA RN7SL685P 3 +58943 chr8 HAVANA gene 101052054 101076251 1948.0 + 0 ENSG00000248599.1 lincRNA FLJ42969 2 OTTHUMG00000164780.1 +58944 chr8 HAVANA gene 101122145 101126158 430.0 - 0 ENSG00000253395.1 lincRNA AP003469.2 1 OTTHUMG00000164820.1 +58945 chr8 HAVANA gene 101128987 101133486 602.0 + 0 ENSG00000253355.1 processed_transcript AP003469.1 1 OTTHUMG00000164821.1 +58946 chr8 ENSEMBL gene 101137959 101138313 355.0 + 0 ENSG00000202360.1 misc_RNA RN7SKP249 3 +58947 chr8 HAVANA gene 101139665 101140929 473.0 + 0 ENSG00000253737.1 lincRNA AP003469.3 2 OTTHUMG00000164822.1 +58948 chr8 HAVANA gene 101166805 101169629 2825.0 - 0 ENSG00000261087.1 lincRNA AP003469.4 2 OTTHUMG00000173422.1 +58949 chr8 HAVANA gene 101177878 101206193 7393.0 - 0 ENSG00000120963.11 protein_coding ZNF706 1 OTTHUMG00000164823.3 +58950 chr8 HAVANA gene 101208148 101208558 411.0 + 0 ENSG00000271882.1 lincRNA AP001330.5 2 OTTHUMG00000185511.1 +58951 chr8 HAVANA gene 101223941 101224573 633.0 - 0 ENSG00000253942.1 processed_pseudogene AP001330.3 1 OTTHUMG00000164824.1 pseudo_consens +58952 chr8 HAVANA gene 101261541 101262903 979.0 - 0 ENSG00000253679.1 lincRNA AP001330.2 2 OTTHUMG00000164827.1 +58953 chr8 HAVANA gene 101287445 101293783 731.0 + 0 ENSG00000253282.1 lincRNA AP001330.1 1 OTTHUMG00000164828.1 +58954 chr8 ENSEMBL gene 101307367 101307428 62.0 + 0 ENSG00000239115.1 snRNA RNU7-67P 3 +58955 chr8 HAVANA gene 101337496 101337649 154.0 + 0 ENSG00000271560.1 processed_pseudogene AP001330.4 1 OTTHUMG00000184694.1 pseudo_consens +58956 chr8 HAVANA gene 101366417 101367005 589.0 - 0 ENSG00000254063.2 unprocessed_pseudogene DUXAP2 1 OTTHUMG00000164830.2 pseudo_consens +58957 chr8 HAVANA gene 101361794 101372707 1555.0 + 0 ENSG00000228224.3 transcribed_processed_pseudogene NACA4P 1 OTTHUMG00000164829.1 pseudo_consens +58958 chr8 HAVANA gene 101387299 101393186 408.0 - 0 ENSG00000253644.1 lincRNA AP001208.1 2 OTTHUMG00000164831.1 +58959 chr8 ENSEMBL gene 101397636 101397933 298.0 - 0 ENSG00000239211.3 misc_RNA RN7SL563P 3 +58960 chr8 HAVANA gene 101411873 101452452 578.0 - 0 ENSG00000254084.1 lincRNA AP001208.2 2 OTTHUMG00000164832.1 +58961 chr8 HAVANA gene 101461177 101492499 491.0 - 0 ENSG00000254024.1 antisense AP001207.3 2 OTTHUMG00000164833.1 +58962 chr8 HAVANA gene 101528723 101529569 539.0 - 0 ENSG00000253991.1 processed_pseudogene AP001207.2 1 OTTHUMG00000164834.2 pseudo_consens +58963 chr8 HAVANA gene 101562008 101562488 481.0 - 0 ENSG00000253153.1 processed_pseudogene AP001207.1 1 OTTHUMG00000164835.2 pseudo_consens +58964 chr8 HAVANA gene 101492432 101669726 6060.0 + 0 ENSG00000083307.11 protein_coding GRHL2 2 OTTHUMG00000149915.5 +58965 chr8 HAVANA gene 101686547 101689093 361.0 + 0 ENSG00000253629.1 antisense AP000426.1 2 OTTHUMG00000164875.1 +58966 chr8 ENSEMBL gene 101847256 101847360 105.0 - 0 ENSG00000238372.1 snoRNA RF01210 3 +58967 chr8 HAVANA gene 101871830 101872549 720.0 - 0 ENSG00000282989.1 processed_pseudogene AP001206.1 1 OTTHUMG00000191513.1 pseudo_consens +58968 chr8 HAVANA gene 101686543 102124907 8042.0 - 0 ENSG00000104490.17 protein_coding NCALD 1 OTTHUMG00000164876.7 ncRNA_host +58969 chr8 ENSEMBL gene 102125432 102125515 84.0 + 0 ENSG00000266756.1 miRNA MIR5680 3 +58970 chr8 HAVANA gene 102154550 102154725 176.0 + 0 ENSG00000254492.1 processed_pseudogene AP001328.1 1 OTTHUMG00000165620.1 pseudo_consens +58971 chr8 HAVANA gene 102204502 102239118 5548.0 - 0 ENSG00000048392.11 protein_coding RRM2B 1 OTTHUMG00000164776.6 +58972 chr8 HAVANA gene 102242040 102242619 295.0 - 0 ENSG00000253328.2 unprocessed_pseudogene SUMO2P19 1 OTTHUMG00000164794.3 pseudo_consens +58973 chr8 HAVANA gene 102239394 102253333 2355.0 + 0 ENSG00000246263.2 antisense UBR5-AS1 2 OTTHUMG00000164878.1 +58974 chr8 HAVANA gene 102256392 102257821 1430.0 + 0 ENSG00000272037.1 antisense AP002907.1 2 OTTHUMG00000185512.1 +58975 chr8 HAVANA gene 102253012 102412841 13085.0 - 0 ENSG00000104517.12 protein_coding UBR5 1 OTTHUMG00000164755.4 +58976 chr8 HAVANA gene 102417979 102418953 975.0 + 0 ENSG00000253923.2 processed_pseudogene AP002981.1 1 OTTHUMG00000164718.3 pseudo_consens +58977 chr8 ENSEMBL gene 102421197 102421322 126.0 + 0 ENSG00000221387.1 snRNA RNU6ATAC8P 3 +58978 chr8 HAVANA gene 102451763 102452483 302.0 + 0 ENSG00000271612.1 processed_pseudogene HSPE1P14 1 OTTHUMG00000184578.1 pseudo_consens +58979 chr8 HAVANA gene 102503753 102504137 385.0 + 0 ENSG00000240724.2 processed_pseudogene RPS12P15 1 OTTHUMG00000158675.3 pseudo_consens +58980 chr8 ENSEMBL gene 102533241 102533339 99.0 - 0 ENSG00000252593.1 snRNA RNU6-1224P 3 +58981 chr8 HAVANA gene 102528740 102538668 1231.0 + 0 ENSG00000253633.1 lincRNA AP002852.1 1 OTTHUMG00000164777.1 +58982 chr8 HAVANA gene 102551572 102561017 1042.0 + 0 ENSG00000155087.3 protein_coding ODF1 2 OTTHUMG00000164719.2 +58983 chr8 HAVANA gene 102621509 102622331 823.0 - 0 ENSG00000253382.3 processed_pseudogene POU5F1P2 1 OTTHUMG00000164734.5 pseudo_consens +58984 chr8 HAVANA gene 102648779 102655902 4003.0 - 0 ENSG00000155090.14 protein_coding KLF10 2 OTTHUMG00000164735.1 +58985 chr8 HAVANA gene 102656464 102687118 2130.0 + 0 ENSG00000283959.1 bidirectional_promoter_lncRNA AP002851.1 2 OTTHUMG00000191992.1 +58986 chr8 HAVANA gene 102688317 102688906 429.0 - 0 ENSG00000250684.4 processed_pseudogene ADI1P2 1 OTTHUMG00000160496.4 pseudo_consens +58987 chr8 HAVANA gene 102805517 102809971 2829.0 + 0 ENSG00000253669.3 lincRNA GASAL1 1 OTTHUMG00000164736.2 +58988 chr8 HAVANA gene 102854455 102856075 770.0 + 0 ENSG00000253385.1 lincRNA AP003696.1 2 OTTHUMG00000164839.1 +58989 chr8 HAVANA gene 102891876 102893608 533.0 + 0 ENSG00000253263.1 lincRNA AP003354.1 2 OTTHUMG00000164836.1 overlapping_locus +58990 chr8 HAVANA gene 102826357 102893864 6426.0 - 0 ENSG00000155096.13 protein_coding AZIN1 1 OTTHUMG00000164766.8 +58991 chr8 HAVANA gene 102923371 102924255 885.0 - 0 ENSG00000244052.1 processed_pseudogene RPL5P24 1 OTTHUMG00000158676.1 pseudo_consens +58992 chr8 ENSEMBL gene 102950467 102950564 98.0 - 0 ENSG00000201216.1 misc_RNA RF00019 3 +58993 chr8 HAVANA gene 102864280 103001684 6686.0 + 0 ENSG00000253320.6 antisense AZIN1-AS1 1 OTTHUMG00000164825.4 overlapping_locus +58994 chr8 HAVANA gene 103016744 103017589 846.0 + 0 ENSG00000253663.1 processed_pseudogene NPM1P52 1 OTTHUMG00000164762.1 pseudo_consens +58995 chr8 HAVANA gene 103020187 103021428 414.0 - 0 ENSG00000254236.1 antisense AP003550.1 1 OTTHUMG00000164763.1 +58996 chr8 HAVANA gene 103021063 103073051 5851.0 + 0 ENSG00000155097.11 protein_coding ATP6V1C1 1 OTTHUMG00000164761.1 +58997 chr8 HAVANA gene 103085651 103086590 940.0 + 0 ENSG00000253795.1 processed_pseudogene MTND1P5 2 OTTHUMG00000164801.1 +58998 chr8 HAVANA gene 103088796 103090671 1409.0 + 0 ENSG00000253556.1 processed_pseudogene MTCO1P4 2 OTTHUMG00000164843.1 +58999 chr8 HAVANA gene 103091263 103091509 247.0 + 0 ENSG00000253977.1 processed_pseudogene MTCO2P4 2 OTTHUMG00000164844.1 +59000 chr8 HAVANA gene 103121032 103132966 556.0 + 0 ENSG00000250929.2 antisense LINC01181 1 OTTHUMG00000164764.1 +59001 chr8 HAVANA gene 103132963 103141475 513.0 - 0 ENSG00000236939.2 antisense BAALC-AS2 2 OTTHUMG00000164781.1 +59002 chr8 ENSEMBL gene 103154614 103154689 76.0 + 0 ENSG00000265657.1 miRNA MIR3151 3 +59003 chr8 HAVANA gene 103228425 103229314 583.0 - 0 ENSG00000253851.1 antisense AC025370.1 2 OTTHUMG00000164799.1 overlapping_locus +59004 chr8 HAVANA gene 103140710 103230305 3997.0 + 0 ENSG00000164929.16 protein_coding BAALC 2 OTTHUMG00000164782.2 ncRNA_host +59005 chr8 HAVANA gene 103156990 103298772 3877.0 - 0 ENSG00000247081.7 antisense BAALC-AS1 1 OTTHUMG00000164798.4 overlapping_locus +59006 chr8 HAVANA gene 103298433 103332866 4065.0 + 0 ENSG00000164930.11 protein_coding FZD6 2 OTTHUMG00000164840.1 +59007 chr8 HAVANA gene 103371515 103382997 1776.0 + 0 ENSG00000164932.12 protein_coding CTHRC1 1 OTTHUMG00000164887.1 +59008 chr8 HAVANA gene 103383078 103383854 777.0 - 0 ENSG00000266289.1 lincRNA AC012213.3 2 OTTHUMG00000178595.1 +59009 chr8 ENSEMBL gene 103384961 103385067 107.0 + 0 ENSG00000207399.1 snRNA RNU6-1011P 3 +59010 chr8 HAVANA gene 103398635 103415189 3654.0 - 0 ENSG00000164933.11 protein_coding SLC25A32 2 OTTHUMG00000164790.6 overlapping_locus +59011 chr8 HAVANA gene 103414714 103443453 9199.0 + 0 ENSG00000164934.13 protein_coding DCAF13 2 OTTHUMG00000164888.5 +59012 chr8 HAVANA gene 103464389 103468985 4597.0 + 0 ENSG00000261670.1 lincRNA AC012213.2 2 OTTHUMG00000173365.2 +59013 chr8 HAVANA gene 103481266 103481619 354.0 - 0 ENSG00000271830.1 lincRNA AC012213.4 2 OTTHUMG00000185513.1 overlapping_locus +59014 chr8 HAVANA gene 103483398 103501676 999.0 - 0 ENSG00000253477.5 antisense AC012213.1 1 OTTHUMG00000165035.1 overlapping_locus +59015 chr8 HAVANA gene 103398658 103501895 2879.0 - 0 ENSG00000285982.1 protein_coding AC012213.5 2 OTTHUMG00000193366.1 overlapping_locus +59016 chr8 HAVANA gene 103559099 103559389 291.0 - 0 ENSG00000255105.1 processed_pseudogene AC007751.2 2 OTTHUMG00000165288.1 +59017 chr8 HAVANA gene 103568603 103568978 376.0 - 0 ENSG00000254644.1 processed_pseudogene AC007751.1 1 OTTHUMG00000165289.1 pseudo_consens +59018 chr8 HAVANA gene 103768281 103769029 749.0 + 0 ENSG00000239344.1 processed_pseudogene AC090686.1 1 OTTHUMG00000158677.1 pseudo_consens,overlapping_locus +59019 chr8 HAVANA gene 103500748 104256094 13619.0 + 0 ENSG00000176406.22 protein_coding RIMS2 1 OTTHUMG00000162097.11 overlapping_locus +59020 chr8 HAVANA gene 104339087 104356689 2778.0 + 0 ENSG00000164935.6 protein_coding DCSTAMP 1 OTTHUMG00000164890.1 +59021 chr8 HAVANA gene 104419512 104421500 1989.0 - 0 ENSG00000179577.3 sense_intronic AP003471.1 2 OTTHUMG00000186799.1 overlapping_locus +59022 chr8 HAVANA gene 104330324 104467053 3818.0 - 0 ENSG00000147647.12 protein_coding DPYS 1 OTTHUMG00000164891.4 overlapping_locus +59023 chr8 HAVANA gene 104478539 104480783 2245.0 - 0 ENSG00000279138.1 TEC AP002847.1 2 OTTHUMG00000173419.1 +59024 chr8 ENSEMBL gene 104484369 104484465 97.0 - 0 ENSG00000208032.1 miRNA MIR548A3 3 +59025 chr8 HAVANA gene 104566086 104566429 344.0 + 0 ENSG00000253454.1 processed_pseudogene NDUFA5P2 1 OTTHUMG00000164813.1 pseudo_consens +59026 chr8 HAVANA gene 104489231 104589024 9777.0 - 0 ENSG00000147650.11 protein_coding LRP12 2 OTTHUMG00000164892.6 +59027 chr8 HAVANA gene 104699479 104703555 557.0 - 0 ENSG00000283157.1 antisense AC012564.1 2 OTTHUMG00000191623.1 +59028 chr8 HAVANA gene 104981164 104981579 416.0 - 0 ENSG00000243939.1 processed_pseudogene AC090142.2 1 OTTHUMG00000158678.1 pseudo_consens +59029 chr8 HAVANA gene 104990308 104990692 385.0 - 0 ENSG00000253997.1 processed_pseudogene AC090142.3 1 OTTHUMG00000164815.1 pseudo_consens +59030 chr8 HAVANA gene 105011107 105011568 462.0 + 0 ENSG00000240271.1 processed_pseudogene AC090142.1 1 OTTHUMG00000158679.1 pseudo_consens,overlapping_locus +59031 chr8 HAVANA gene 105142860 105188606 1031.0 - 0 ENSG00000254041.1 antisense AC021546.1 1 OTTHUMG00000164816.1 +59032 chr8 HAVANA gene 105194990 105196969 1980.0 - 0 ENSG00000253318.1 processed_pseudogene TMCC1P1 1 OTTHUMG00000164817.1 pseudo_consens +59033 chr8 HAVANA gene 105287830 105288365 536.0 - 0 ENSG00000243171.1 processed_pseudogene AC041039.1 1 OTTHUMG00000158680.1 pseudo_consens +59034 chr8 HAVANA gene 105669991 105679031 716.0 + 0 ENSG00000254141.1 sense_intronic AC103853.2 1 OTTHUMG00000164860.1 overlapping_locus +59035 chr8 HAVANA gene 105662352 105685765 649.0 - 0 ENSG00000253420.1 antisense AC103853.1 2 OTTHUMG00000164859.1 +59036 chr8 HAVANA gene 105737280 105737765 486.0 - 0 ENSG00000243601.1 processed_pseudogene RPL12P24 1 OTTHUMG00000158681.1 pseudo_consens +59037 chr8 HAVANA gene 104590733 105804532 7775.0 + 0 ENSG00000169946.13 protein_coding ZFPM2 2 OTTHUMG00000164818.4 overlapping_locus +59038 chr8 HAVANA gene 105826570 105834038 445.0 + 0 ENSG00000253526.1 lincRNA AC090802.1 1 OTTHUMG00000164862.1 +59039 chr8 ENSEMBL gene 105929126 105929238 113.0 - 0 ENSG00000201627.1 misc_RNA RF00019 3 +59040 chr8 HAVANA gene 105546089 106060524 2667.0 - 0 ENSG00000251003.8 processed_transcript ZFPM2-AS1 2 OTTHUMG00000164861.3 ncRNA_host +59041 chr8 HAVANA gene 106215763 106217218 1117.0 + 0 ENSG00000213708.6 unprocessed_pseudogene SLC16A14P1 1 OTTHUMG00000160423.3 pseudo_consens +59042 chr8 HAVANA gene 106265435 106268741 489.0 - 0 ENSG00000254021.1 lincRNA AC027031.1 2 OTTHUMG00000164806.1 +59043 chr8 HAVANA gene 106270144 106272899 1419.0 + 0 ENSG00000254615.2 lincRNA AC027031.2 2 OTTHUMG00000156320.6 +59044 chr8 HAVANA gene 106520474 106657548 504.0 - 0 ENSG00000253582.1 antisense AC090579.1 2 OTTHUMG00000164807.1 +59045 chr8 HAVANA gene 106697427 106698013 587.0 - 0 ENSG00000253676.1 processed_pseudogene TAGLN2P1 1 OTTHUMG00000164808.2 pseudo_consens +59046 chr8 ENSEMBL gene 106729795 106729856 62.0 - 0 ENSG00000251892.1 snRNA RNU7-84P 3 +59047 chr8 HAVANA gene 106359476 106752694 7079.0 + 0 ENSG00000164830.18 protein_coding OXR1 1 OTTHUMG00000167682.3 +59048 chr8 HAVANA gene 106759483 106770245 2755.0 - 0 ENSG00000174429.3 protein_coding ABRA 2 OTTHUMG00000164809.1 +59049 chr8 HAVANA gene 106980967 106981571 605.0 - 0 ENSG00000275905.1 unprocessed_pseudogene AP003789.1 2 OTTHUMG00000187749.1 +59050 chr8 HAVANA gene 107173200 107173809 610.0 - 0 ENSG00000254146.1 processed_pseudogene HMGB1P46 1 OTTHUMG00000164810.2 pseudo_consens +59051 chr8 HAVANA gene 107249482 107498055 7128.0 - 0 ENSG00000154188.9 protein_coding ANGPT1 2 OTTHUMG00000164812.7 +59052 chr8 HAVANA gene 107647279 107648032 754.0 + 0 ENSG00000248838.2 processed_pseudogene PGAM1P13 1 OTTHUMG00000160125.2 pseudo_consens +59053 chr8 ENSEMBL gene 107884494 107884611 118.0 + 0 ENSG00000200806.1 rRNA_pseudogene RNA5SP275 3 +59054 chr8 HAVANA gene 107983116 107983965 850.0 + 0 ENSG00000253228.1 processed_pseudogene NRBF2P4 1 OTTHUMG00000164894.1 pseudo_consens +59055 chr8 HAVANA gene 107899316 108083648 4115.0 - 0 ENSG00000147655.10 protein_coding RSPO2 1 OTTHUMG00000164893.2 +59056 chr8 HAVANA gene 108131100 108132114 1015.0 - 0 ENSG00000230948.1 processed_pseudogene AP001331.1 1 OTTHUMG00000133578.1 pseudo_consens +59057 chr8 HAVANA gene 108226200 108227544 447.0 + 0 ENSG00000253754.1 antisense AC087620.1 1 OTTHUMG00000164866.1 +59058 chr8 HAVANA gene 108378831 108379545 395.0 - 0 ENSG00000243287.2 processed_pseudogene RPS17P14 1 OTTHUMG00000158682.3 pseudo_consens,overlapping_locus +59059 chr8 HAVANA gene 108201216 108435333 6005.0 - 0 ENSG00000104408.9 protein_coding EIF3E 1 OTTHUMG00000164858.6 overlapping_locus +59060 chr8 HAVANA gene 108443601 108486918 3781.0 + 0 ENSG00000104412.7 protein_coding EMC2 2 OTTHUMG00000164873.5 +59061 chr8 HAVANA gene 108572643 108573174 532.0 + 0 ENSG00000253657.1 processed_pseudogene AC022634.1 1 OTTHUMG00000164879.1 pseudo_consens +59062 chr8 HAVANA gene 108581062 108626767 382.0 + 0 ENSG00000253949.1 lincRNA AC022634.2 2 OTTHUMG00000164880.1 +59063 chr8 HAVANA gene 108652373 108653315 943.0 + 0 ENSG00000253580.1 processed_pseudogene TRMT10BP1 1 OTTHUMG00000164882.1 pseudo_consens +59064 chr8 HAVANA gene 108606850 108787615 2877.0 - 0 ENSG00000164841.4 protein_coding TMEM74 2 OTTHUMG00000164881.1 +59065 chr8 HAVANA gene 108895029 109063417 890.0 - 0 ENSG00000253796.1 antisense AC104248.1 2 OTTHUMG00000164909.1 +59066 chr8 HAVANA gene 109086621 109119584 1678.0 + 0 ENSG00000174417.2 protein_coding TRHR 2 OTTHUMG00000164910.1 +59067 chr8 HAVANA gene 109298598 109316513 1643.0 + 0 ENSG00000250267.2 antisense AC021237.1 1 OTTHUMG00000164932.1 +59068 chr8 HAVANA gene 109240919 109334385 4439.0 - 0 ENSG00000120526.10 protein_coding NUDCD1 2 OTTHUMG00000164931.1 +59069 chr8 HAVANA gene 109334324 109345953 6783.0 + 0 ENSG00000120533.12 protein_coding ENY2 1 OTTHUMG00000164933.1 +59070 chr8 HAVANA gene 109470131 109471117 987.0 + 0 ENSG00000254185.1 processed_pseudogene MAPK6P5 2 OTTHUMG00000164935.1 overlapping_locus +59071 chr8 HAVANA gene 109362477 109530330 13728.0 + 0 ENSG00000205038.11 protein_coding PKHD1L1 2 OTTHUMG00000164934.3 overlapping_locus +59072 chr8 HAVANA gene 109539711 109565996 3681.0 + 0 ENSG00000147654.14 protein_coding EBAG9 1 OTTHUMG00000165346.3 +59073 chr8 HAVANA gene 109644115 109648084 3075.0 + 0 ENSG00000248050.1 antisense AC079061.1 1 OTTHUMG00000165635.1 +59074 chr8 HAVANA gene 109573978 109691791 7024.0 - 0 ENSG00000147642.16 protein_coding SYBU 2 OTTHUMG00000165634.2 +59075 chr8 HAVANA gene 109777912 109782288 2978.0 + 0 ENSG00000255099.1 processed_pseudogene AC023245.2 1 OTTHUMG00000165636.1 pseudo_consens +59076 chr8 ENSEMBL gene 109873913 109874018 106.0 - 0 ENSG00000283555.1 snRNA RF00004 3 +59077 chr8 HAVANA gene 109899246 109899762 517.0 - 0 ENSG00000241385.1 processed_pseudogene AC023245.1 1 OTTHUMG00000158683.1 pseudo_consens +59078 chr8 HAVANA gene 109973943 109974781 553.0 + 0 ENSG00000255402.1 antisense AC027451.1 2 OTTHUMG00000165638.1 +59079 chr8 HAVANA gene 109963645 109975847 6979.0 - 0 ENSG00000164794.8 protein_coding KCNV1 2 OTTHUMG00000165637.1 +59080 chr8 HAVANA gene 110105076 110105964 889.0 - 0 ENSG00000240590.1 processed_pseudogene RPSAP48 1 OTTHUMG00000158689.1 pseudo_consens +59081 chr8 HAVANA gene 110334743 110349607 773.0 - 0 ENSG00000253956.1 lincRNA AC073023.1 2 OTTHUMG00000164903.1 +59082 chr8 HAVANA gene 110555408 110556518 1111.0 + 0 ENSG00000253107.1 processed_pseudogene AC090819.1 1 OTTHUMG00000164904.1 pseudo_consens +59083 chr8 HAVANA gene 110609241 110632394 202.0 + 0 ENSG00000253122.1 lincRNA AC025366.1 2 OTTHUMG00000164915.1 +59084 chr8 HAVANA gene 110766863 110772759 476.0 + 0 ENSG00000253717.1 lincRNA AP005357.1 2 OTTHUMG00000164905.1 +59085 chr8 HAVANA gene 110809394 110809894 501.0 - 0 ENSG00000253994.1 processed_pseudogene NDUFB9P3 1 OTTHUMG00000164906.1 pseudo_consens +59086 chr8 HAVANA gene 110933263 110934533 1271.0 - 0 ENSG00000254241.1 processed_pseudogene MTCO1P47 2 OTTHUMG00000164907.1 +59087 chr8 HAVANA gene 110937690 111027433 752.0 - 0 ENSG00000253877.5 lincRNA LINC01608 2 OTTHUMG00000164908.1 +59088 chr8 HAVANA gene 111179193 111179872 191.0 - 0 ENSG00000253489.1 lincRNA AC009930.1 2 OTTHUMG00000164913.1 overlapping_locus +59089 chr8 HAVANA gene 111225585 111227049 715.0 + 0 ENSG00000254124.1 processed_pseudogene EEF1A1P37 1 OTTHUMG00000164914.1 pseudo_consens +59090 chr8 HAVANA gene 111098961 111236203 900.0 - 0 ENSG00000253103.1 lincRNA LINC01609 2 OTTHUMG00000164912.1 overlapping_locus +59091 chr8 HAVANA gene 111380603 111380868 266.0 + 0 ENSG00000255033.1 processed_pseudogene SERPINA15P 1 OTTHUMG00000165105.1 pseudo_consens,overlapping_locus +59092 chr8 HAVANA gene 111621458 111621797 340.0 - 0 ENSG00000253156.1 processed_pseudogene AC022360.1 1 OTTHUMG00000164884.1 pseudo_consens +59093 chr8 HAVANA gene 111376639 111756826 2402.0 + 0 ENSG00000253434.7 lincRNA LINC02237 2 OTTHUMG00000164883.3 +59094 chr8 ENSEMBL gene 112148742 112148825 84.0 - 0 ENSG00000222146.1 snRNA RNU4-37P 3 +59095 chr8 HAVANA gene 112538889 112539317 429.0 + 0 ENSG00000230169.1 processed_pseudogene RPL30P16 1 OTTHUMG00000157026.1 pseudo_consens +59096 chr8 ENSEMBL gene 112643493 112643583 91.0 + 0 ENSG00000238399.1 miRNA MIR2053 3 +59097 chr8 HAVANA gene 113376669 113377227 521.0 + 0 ENSG00000227514.3 processed_pseudogene AC107890.1 1 OTTHUMG00000157028.4 pseudo_consens +59098 chr8 HAVANA gene 112222928 113437099 20567.0 - 0 ENSG00000164796.17 protein_coding CSMD3 2 OTTHUMG00000157027.4 +59099 chr8 HAVANA gene 113600310 113616958 1584.0 + 0 ENSG00000253207.3 lincRNA AC103993.1 2 OTTHUMG00000164895.3 +59100 chr8 ENSEMBL gene 113950886 113950998 113.0 + 0 ENSG00000206719.1 misc_RNA RF00019 3 +59101 chr8 HAVANA gene 114282067 114295839 1192.0 + 0 ENSG00000254339.5 lincRNA AC064802.1 2 OTTHUMG00000164897.1 +59102 chr8 HAVANA gene 114318400 114318911 512.0 - 0 ENSG00000253499.2 processed_pseudogene AC025881.1 1 OTTHUMG00000164898.2 pseudo_consens +59103 chr8 HAVANA gene 114791653 114791929 277.0 - 0 ENSG00000253756.1 processed_pseudogene CARSP2 1 OTTHUMG00000164902.2 pseudo_consens +59104 chr8 HAVANA gene 115509602 115511325 402.0 + 0 ENSG00000227170.1 antisense AF178030.1 2 OTTHUMG00000142828.1 +59105 chr8 HAVANA gene 115408496 115809673 11072.0 - 0 ENSG00000104447.12 protein_coding TRPS1 1 OTTHUMG00000142829.6 +59106 chr8 ENSEMBL gene 116022686 116022779 94.0 - 0 ENSG00000199450.1 rRNA_pseudogene RNA5SP276 3 +59107 chr8 HAVANA gene 115950511 116325059 2692.0 - 0 ENSG00000249917.2 lincRNA LINC00536 2 OTTHUMG00000164936.1 +59108 chr8 HAVANA gene 116402543 116403757 555.0 - 0 ENSG00000253672.1 lincRNA AC105177.1 2 OTTHUMG00000164918.1 +59109 chr8 HAVANA gene 116642130 116766925 6434.0 - 0 ENSG00000147677.10 protein_coding EIF3H 1 OTTHUMG00000164919.2 +59110 chr8 HAVANA gene 116766503 116849463 5252.0 + 0 ENSG00000147679.11 protein_coding UTP23 2 OTTHUMG00000164958.3 +59111 chr8 ENSEMBL gene 116874728 116874800 73.0 - 0 ENSG00000283956.1 miRNA MIR3610 3 +59112 chr8 HAVANA gene 116845935 116874866 6192.0 - 0 ENSG00000164754.14 protein_coding RAD21 1 OTTHUMG00000164959.3 ncRNA_host +59113 chr8 HAVANA gene 116874424 116876868 2010.0 + 0 ENSG00000253327.2 antisense RAD21-AS1 1 OTTHUMG00000164960.2 +59114 chr8 HAVANA gene 116938199 116944487 2412.0 + 0 ENSG00000205002.3 protein_coding AARD 2 OTTHUMG00000164961.1 +59115 chr8 ENSEMBL gene 117017946 117018248 303.0 + 0 ENSG00000244033.3 misc_RNA RN7SL228P 3 +59116 chr8 HAVANA gene 117055818 117056145 328.0 + 0 ENSG00000253271.2 processed_pseudogene AC027419.1 1 OTTHUMG00000164963.2 pseudo_consens,overlapping_locus +59117 chr8 HAVANA gene 117128455 117130299 497.0 + 0 ENSG00000253622.1 sense_intronic AC027419.2 2 OTTHUMG00000164964.1 overlapping_locus +59118 chr8 ENSEMBL gene 117163968 117164255 288.0 + 0 ENSG00000240151.3 misc_RNA RN7SL826P 3 +59119 chr8 HAVANA gene 116950273 117176714 6279.0 + 0 ENSG00000164756.12 protein_coding SLC30A8 2 OTTHUMG00000164962.3 ncRNA_host,overlapping_locus +59120 chr8 ENSEMBL gene 117313528 117313661 134.0 + 0 ENSG00000252852.1 snoRNA RF00322 3 +59121 chr8 HAVANA gene 117523271 117524061 496.0 - 0 ENSG00000239917.3 unprocessed_pseudogene RPS10P16 1 OTTHUMG00000158690.3 pseudo_consens +59122 chr8 HAVANA gene 117520713 117540262 1440.0 + 0 ENSG00000164758.7 protein_coding MED30 2 OTTHUMG00000164920.2 +59123 chr8 HAVANA gene 117794490 118111853 8325.0 - 0 ENSG00000182197.11 protein_coding EXT1 2 OTTHUMG00000059718.6 +59124 chr8 HAVANA gene 118282139 118400605 1617.0 + 0 ENSG00000225885.7 antisense AC023590.1 2 OTTHUMG00000059818.5 +59125 chr8 HAVANA gene 118189455 118622112 15378.0 - 0 ENSG00000177570.14 protein_coding SAMD12 2 OTTHUMG00000059817.6 +59126 chr8 HAVANA gene 118761856 118762201 346.0 - 0 ENSG00000242206.2 processed_pseudogene RPS26P35 1 OTTHUMG00000158691.2 pseudo_consens +59127 chr8 HAVANA gene 118621001 118858218 880.0 + 0 ENSG00000281641.2 lincRNA SAMD12-AS1 2 OTTHUMG00000189550.2 +59128 chr8 HAVANA gene 118923557 118952200 2827.0 - 0 ENSG00000164761.8 protein_coding TNFRSF11B 2 OTTHUMG00000164969.1 +59129 chr8 ENSEMBL gene 118976513 118976619 107.0 + 0 ENSG00000207334.1 snRNA RNU6-12P 3 +59130 chr8 HAVANA gene 118982579 118982875 297.0 - 0 ENSG00000254247.1 processed_pseudogene AC107953.1 1 OTTHUMG00000164970.1 pseudo_consens +59131 chr8 HAVANA gene 119062942 119068782 1408.0 - 0 ENSG00000254278.1 antisense AC107953.2 2 OTTHUMG00000164972.1 +59132 chr8 HAVANA gene 118995452 119106582 1670.0 + 0 ENSG00000184374.2 protein_coding COLEC10 2 OTTHUMG00000164971.1 +59133 chr8 HAVANA gene 119165034 119245673 3430.0 + 0 ENSG00000147676.13 protein_coding MAL2 2 OTTHUMG00000164973.4 +59134 chr8 HAVANA gene 119215111 119246848 1515.0 - 0 ENSG00000253972.5 lincRNA MAL2-AS1 2 OTTHUMG00000164978.1 +59135 chr8 ENSEMBL gene 119325171 119325265 95.0 + 0 ENSG00000276479.1 miRNA MIR548AZ 3 +59136 chr8 ENSEMBL gene 119388348 119388469 122.0 + 0 ENSG00000206776.1 snoRNA RF00421 3 +59137 chr8 HAVANA gene 119416306 119424353 2673.0 + 0 ENSG00000136999.4 protein_coding NOV 2 OTTHUMG00000164984.1 +59138 chr8 HAVANA gene 119419910 119462350 325.0 - 0 ENSG00000253398.1 antisense AC021733.1 2 OTTHUMG00000164985.1 +59139 chr8 HAVANA gene 119480279 119480775 497.0 - 0 ENSG00000254037.2 processed_pseudogene AC021733.2 2 OTTHUMG00000164994.2 +59140 chr8 HAVANA gene 119618162 119618474 313.0 - 0 ENSG00000253495.1 processed_pseudogene CYCSP23 2 OTTHUMG00000164996.1 overlapping_locus +59141 chr8 HAVANA gene 119557086 119673453 6729.0 - 0 ENSG00000136960.12 protein_coding ENPP2 1 OTTHUMG00000164995.2 overlapping_locus +59142 chr8 ENSEMBL gene 119711830 119712145 316.0 - 0 ENSG00000201896.1 misc_RNA RN7SKP153 3 +59143 chr8 HAVANA gene 119730775 119832863 6547.0 - 0 ENSG00000064313.11 protein_coding TAF2 1 OTTHUMG00000165009.4 +59144 chr8 HAVANA gene 119838736 119840385 1650.0 - 0 ENSG00000279347.1 TEC AC021945.1 2 OTTHUMG00000165011.2 overlapping_locus +59145 chr8 HAVANA gene 119833976 119856010 2603.0 - 0 ENSG00000136982.5 protein_coding DSCC1 2 OTTHUMG00000165010.1 overlapping_locus +59146 chr8 ENSEMBL gene 119862662 119862956 295.0 + 0 ENSG00000244642.3 misc_RNA RN7SL396P 3 +59147 chr8 HAVANA gene 119867419 119874488 1945.0 - 0 ENSG00000245330.4 lincRNA AP005717.1 2 OTTHUMG00000165012.2 +59148 chr8 ENSEMBL gene 119891132 119891229 98.0 - 0 ENSG00000202356.1 rRNA_pseudogene RNA5SP277 3 +59149 chr8 HAVANA gene 119873717 120050913 2622.0 + 0 ENSG00000155792.9 protein_coding DEPTOR 2 OTTHUMG00000165052.1 +59150 chr8 HAVANA gene 120052180 120056201 752.0 + 0 ENSG00000254343.2 lincRNA AC091563.1 1 OTTHUMG00000165053.2 +59151 chr8 HAVANA gene 120059780 120372036 8647.0 + 0 ENSG00000187955.11 protein_coding COL14A1 1 OTTHUMG00000149877.4 +59152 chr8 HAVANA gene 120380761 120445402 4209.0 - 0 ENSG00000172172.7 protein_coding MRPL13 1 OTTHUMG00000165039.2 +59153 chr8 HAVANA gene 120445400 120542133 8326.0 + 0 ENSG00000172167.7 protein_coding MTBP 2 OTTHUMG00000165040.1 +59154 chr8 HAVANA gene 120635558 120638204 1814.0 - 0 ENSG00000250290.1 processed_pseudogene NCAPGP1 1 OTTHUMG00000160497.1 pseudo_consens,overlapping_locus +59155 chr8 HAVANA gene 120761253 120776832 1973.0 + 0 ENSG00000248318.1 antisense AC104958.1 2 OTTHUMG00000165042.1 +59156 chr8 HAVANA gene 120535745 120813273 6747.0 - 0 ENSG00000172164.14 protein_coding SNTB1 2 OTTHUMG00000165041.4 overlapping_locus +59157 chr8 HAVANA gene 120812219 120813359 1141.0 + 0 ENSG00000272502.1 antisense AC104958.2 2 OTTHUMG00000185517.1 +59158 chr8 HAVANA gene 121113358 121113919 562.0 - 0 ENSG00000271219.1 processed_pseudogene AC011626.1 1 OTTHUMG00000184723.1 pseudo_consens +59159 chr8 HAVANA gene 120913065 121119754 776.0 + 0 ENSG00000253619.1 lincRNA AC068413.1 2 OTTHUMG00000165043.1 +59160 chr8 HAVANA gene 121380137 121380465 329.0 - 0 ENSG00000239872.1 processed_pseudogene RPL35AP19 1 OTTHUMG00000158692.1 pseudo_consens +59161 chr8 HAVANA gene 121612116 121641390 4190.0 - 0 ENSG00000170961.6 protein_coding HAS2 2 OTTHUMG00000164953.2 +59162 chr8 HAVANA gene 121671773 121684562 414.0 - 0 ENSG00000254209.1 lincRNA AC104233.1 1 OTTHUMG00000164954.1 +59163 chr8 HAVANA gene 121639293 121993876 3533.0 + 0 ENSG00000248690.7 processed_transcript HAS2-AS1 2 OTTHUMG00000164965.5 +59164 chr8 HAVANA gene 122091480 122091609 130.0 + 0 ENSG00000253814.1 processed_pseudogene MRPS36P3 1 OTTHUMG00000164968.1 pseudo_consens +59165 chr8 HAVANA gene 121954640 122127184 790.0 - 0 ENSG00000254303.1 lincRNA AC037486.1 2 OTTHUMG00000164967.1 +59166 chr8 HAVANA gene 122414332 122428551 553.0 - 0 ENSG00000255364.1 lincRNA SMILR 2 OTTHUMG00000165130.1 +59167 chr8 HAVANA gene 122485515 122489815 631.0 - 0 ENSG00000255325.2 lincRNA AC108136.1 2 OTTHUMG00000165131.2 +59168 chr8 ENSEMBL gene 122671291 122671394 104.0 + 0 ENSG00000238901.1 snoRNA RF01210 3 +59169 chr8 HAVANA gene 122670385 122694106 571.0 - 0 ENSG00000253819.1 lincRNA LINC01151 1 OTTHUMG00000165076.1 +59170 chr8 HAVANA gene 122700269 122703423 501.0 - 0 ENSG00000263443.1 lincRNA AC100872.1 2 OTTHUMG00000179558.1 +59171 chr8 HAVANA gene 122769274 122770150 877.0 + 0 ENSG00000235165.2 processed_pseudogene CDK5P1 1 OTTHUMG00000133575.2 pseudo_consens +59172 chr8 HAVANA gene 122779971 122780830 860.0 - 0 ENSG00000272384.1 lincRNA AC016405.3 2 OTTHUMG00000185333.1 +59173 chr8 HAVANA gene 122780760 122781071 312.0 + 0 ENSG00000272043.1 lincRNA AC016405.2 2 OTTHUMG00000185334.1 +59174 chr8 HAVANA gene 122807746 122816517 1018.0 + 0 ENSG00000253372.5 sense_intronic AC016405.1 2 OTTHUMG00000165078.1 overlapping_locus +59175 chr8 HAVANA gene 122781394 122974512 4716.0 + 0 ENSG00000178764.7 protein_coding ZHX2 2 OTTHUMG00000165077.6 overlapping_locus +59176 chr8 HAVANA gene 122977026 122985629 326.0 - 0 ENSG00000259631.1 lincRNA AC104316.2 2 OTTHUMG00000172563.1 +59177 chr8 HAVANA gene 123002560 123030751 625.0 + 0 ENSG00000253607.1 antisense AC104316.1 2 OTTHUMG00000165079.1 +59178 chr8 HAVANA gene 123013164 123042423 7081.0 - 0 ENSG00000136986.9 protein_coding DERL1 2 OTTHUMG00000165080.3 +59179 chr8 HAVANA gene 123123106 123123682 577.0 + 0 ENSG00000253463.1 processed_pseudogene HMGB1P19 1 OTTHUMG00000165082.1 pseudo_consens,overlapping_locus +59180 chr8 HAVANA gene 123041968 123152153 8611.0 + 0 ENSG00000156787.16 protein_coding TBC1D31 1 OTTHUMG00000165081.8 overlapping_locus +59181 chr8 ENSEMBL gene 123180310 123180525 216.0 - 0 ENSG00000221461.2 snoRNA RF00012 3 +59182 chr8 HAVANA gene 123181638 123182788 777.0 - 0 ENSG00000253258.1 antisense AC068228.1 1 OTTHUMG00000165084.1 +59183 chr8 HAVANA gene 123192875 123192932 58.0 + 0 ENSG00000253410.1 transcribed_processed_pseudogene AC068228.2 2 OTTHUMG00000165085.1 overlapping_locus +59184 chr8 HAVANA gene 123201172 123202743 1347.0 - 0 ENSG00000204949.8 antisense FAM83A-AS1 2 OTTHUMG00000165086.1 +59185 chr8 HAVANA gene 123178960 123210079 6317.0 + 0 ENSG00000147689.16 protein_coding FAM83A 2 OTTHUMG00000165083.3 overlapping_locus +59186 chr8 ENSEMBL gene 123215788 123215863 76.0 - 0 ENSG00000266324.1 miRNA MIR4663 3 +59187 chr8 HAVANA gene 123236852 123237062 211.0 + 0 ENSG00000243498.2 processed_pseudogene UBA52P5 1 OTTHUMG00000158695.3 pseudo_consens +59188 chr8 HAVANA gene 123219957 123241398 2467.0 - 0 ENSG00000189376.11 protein_coding C8orf76 1 OTTHUMG00000172562.2 overlapping_locus +59189 chr8 ENSEMBL gene 123262843 123262949 107.0 + 0 ENSG00000222607.1 snRNA RNU6-628P 3 +59190 chr8 HAVANA gene 123226189 123274284 1325.0 - 0 ENSG00000259305.6 protein_coding ZHX1-C8orf76 2 OTTHUMG00000165087.3 overlapping_locus +59191 chr8 HAVANA gene 123248451 123275541 6741.0 - 0 ENSG00000165156.14 protein_coding ZHX1 1 OTTHUMG00000165088.4 overlapping_locus +59192 chr8 HAVANA gene 123288355 123290503 2149.0 + 0 ENSG00000253336.1 processed_pseudogene AC018992.1 1 OTTHUMG00000165089.1 pseudo_consens +59193 chr8 ENSEMBL gene 123342414 123342519 106.0 + 0 ENSG00000252297.1 snRNA RNU6-875P 3 +59194 chr8 ENSEMBL gene 123348034 123348130 97.0 + 0 ENSG00000207704.2 miRNA MIR548AA1 3 +59195 chr8 ENSEMBL gene 123348034 123348130 97.0 - 0 ENSG00000283172.1 miRNA MIR548D1 3 +59196 chr8 HAVANA gene 123352181 123352643 463.0 + 0 ENSG00000254388.1 processed_pseudogene DUTP2 1 OTTHUMG00000165091.1 pseudo_consens +59197 chr8 HAVANA gene 123400582 123402095 1514.0 + 0 ENSG00000254294.1 processed_pseudogene IMPDH1P6 1 OTTHUMG00000165092.1 pseudo_consens +59198 chr8 HAVANA gene 123319850 123416350 7118.0 - 0 ENSG00000156802.12 protein_coding ATAD2 1 OTTHUMG00000165090.3 ncRNA_host +59199 chr8 ENSEMBL gene 123454981 123455107 127.0 - 0 ENSG00000278374.1 snRNA RF00015 3 +59200 chr8 HAVANA gene 123416725 123470028 4930.0 + 0 ENSG00000156795.7 protein_coding WDYHV1 1 OTTHUMG00000165093.5 +59201 chr8 HAVANA gene 123497889 123541206 7395.0 - 0 ENSG00000156804.7 protein_coding FBXO32 2 OTTHUMG00000164981.2 +59202 chr8 HAVANA gene 123563070 123568762 537.0 - 0 ENSG00000254113.1 lincRNA AC090193.2 1 OTTHUMG00000164982.1 +59203 chr8 ENSEMBL gene 123588759 123589046 288.0 + 0 ENSG00000251840.1 misc_RNA RN7SKP155 3 +59204 chr8 HAVANA gene 123645527 123652950 1982.0 - 0 ENSG00000175946.8 protein_coding KLHL38 2 OTTHUMG00000164983.1 +59205 chr8 HAVANA gene 123614225 123658570 940.0 + 0 ENSG00000253286.5 antisense AC090193.1 2 OTTHUMG00000164986.1 +59206 chr8 HAVANA gene 123680794 123737407 3806.0 - 0 ENSG00000104537.16 protein_coding ANXA13 1 OTTHUMG00000164987.2 +59207 chr8 HAVANA gene 123768456 123815452 7246.0 + 0 ENSG00000176853.15 protein_coding FAM91A1 2 OTTHUMG00000133021.4 +59208 chr8 HAVANA gene 123924759 123925933 331.0 - 0 ENSG00000254000.1 lincRNA AC090753.1 1 OTTHUMG00000164999.1 +59209 chr8 HAVANA gene 124036010 124040468 327.0 - 0 ENSG00000254249.1 antisense AC100871.2 2 OTTHUMG00000165002.1 overlapping_locus +59210 chr8 HAVANA gene 123984138 124040782 2315.0 - 0 ENSG00000181171.5 antisense FER1L6-AS1 2 OTTHUMG00000165001.1 overlapping_locus +59211 chr8 HAVANA gene 123851987 124120061 6051.0 + 0 ENSG00000214814.7 protein_coding FER1L6 2 OTTHUMG00000164998.1 +59212 chr8 HAVANA gene 124141888 124143512 1456.0 + 0 ENSG00000250727.1 processed_pseudogene AC100871.1 1 OTTHUMG00000160428.1 pseudo_consens +59213 chr8 HAVANA gene 124151923 124152433 511.0 + 0 ENSG00000253885.1 processed_pseudogene ARF1P3 1 OTTHUMG00000165003.1 pseudo_consens +59214 chr8 HAVANA gene 124046073 124171522 1746.0 - 0 ENSG00000253868.3 antisense FER1L6-AS2 2 OTTHUMG00000165000.2 +59215 chr8 HAVANA gene 124192671 124247398 1195.0 - 0 ENSG00000214803.3 lincRNA AC090921.1 1 OTTHUMG00000165018.1 +59216 chr8 ENSEMBL gene 124260646 124260752 107.0 + 0 ENSG00000206724.1 snRNA RNU6-756P 3 +59217 chr8 HAVANA gene 124271683 124277584 553.0 + 0 ENSG00000253227.1 lincRNA AC090192.2 1 OTTHUMG00000165019.1 +59218 chr8 HAVANA gene 124301315 124301804 490.0 + 0 ENSG00000237586.3 processed_pseudogene AC090192.1 2 OTTHUMG00000165020.1 +59219 chr8 HAVANA gene 124306189 124372692 9029.0 - 0 ENSG00000164983.7 protein_coding TMEM65 2 OTTHUMG00000165021.2 +59220 chr8 HAVANA gene 124450820 124462150 2331.0 + 0 ENSG00000183665.5 protein_coding TRMT12 2 OTTHUMG00000165022.1 +59221 chr8 HAVANA gene 124462485 124474576 6943.0 - 0 ENSG00000245149.3 lincRNA RNF139-AS1 1 OTTHUMG00000165073.2 +59222 chr8 HAVANA gene 124474738 124487914 2700.0 + 0 ENSG00000170881.4 protein_coding RNF139 1 OTTHUMG00000165072.4 +59223 chr8 HAVANA gene 124488510 124491643 2355.0 + 0 ENSG00000253106.1 antisense AC090198.1 2 OTTHUMG00000165069.1 +59224 chr8 ENSEMBL gene 124508515 124508576 62.0 - 0 ENSG00000284087.1 miRNA MIR6844 3 +59225 chr8 HAVANA gene 124488485 124539458 4778.0 - 0 ENSG00000147687.18 protein_coding TATDN1 1 OTTHUMG00000165068.4 ncRNA_host +59226 chr8 HAVANA gene 124539101 124580648 4106.0 + 0 ENSG00000147684.8 protein_coding NDUFB9 1 OTTHUMG00000165054.2 +59227 chr8 HAVANA gene 124550790 124728429 7727.0 - 0 ENSG00000170873.18 protein_coding MTSS1 1 OTTHUMG00000048189.5 +59228 chr8 ENSEMBL gene 124821985 124822051 67.0 + 0 ENSG00000283609.1 miRNA MIR4662A 3 +59229 chr8 ENSEMBL gene 124821978 124822058 81.0 - 0 ENSG00000263735.1 miRNA MIR4662B 3 +59230 chr8 HAVANA gene 124811226 124857516 2019.0 - 0 ENSG00000255491.2 lincRNA AC100858.3 2 OTTHUMG00000165100.2 ncRNA_host +59231 chr8 HAVANA gene 124920428 124922076 1228.0 + 0 ENSG00000250428.1 processed_pseudogene AC100858.1 1 OTTHUMG00000160429.1 pseudo_consens,overlapping_locus +59232 chr8 HAVANA gene 124936524 124943765 487.0 - 0 ENSG00000255313.1 lincRNA AC100858.2 2 OTTHUMG00000165102.1 +59233 chr8 HAVANA gene 124848737 124954328 5038.0 + 0 ENSG00000249816.6 lincRNA LINC00964 2 OTTHUMG00000165101.1 overlapping_locus +59234 chr8 HAVANA gene 124973298 124979389 3275.0 + 0 ENSG00000180938.5 protein_coding ZNF572 2 OTTHUMG00000164988.1 +59235 chr8 HAVANA gene 124996985 124998198 412.0 - 0 ENSG00000253513.1 antisense AC009908.1 1 OTTHUMG00000164989.1 +59236 chr8 HAVANA gene 124998497 125022283 4305.0 + 0 ENSG00000104549.11 protein_coding SQLE 2 OTTHUMG00000164990.2 +59237 chr8 HAVANA gene 125040684 125044989 587.0 + 0 ENSG00000253167.1 antisense WASHC5-AS1 2 OTTHUMG00000164992.1 +59238 chr8 HAVANA gene 125024260 125091840 4784.0 - 0 ENSG00000164961.15 protein_coding WASHC5 2 OTTHUMG00000164991.4 +59239 chr8 ENSEMBL gene 125270604 125270902 299.0 + 0 ENSG00000242170.3 misc_RNA RN7SL329P 3 +59240 chr8 HAVANA gene 125348196 125351416 722.0 - 0 ENSG00000254431.1 antisense AC084083.1 2 OTTHUMG00000165219.1 +59241 chr8 HAVANA gene 125091679 125367120 2991.0 + 0 ENSG00000156831.7 protein_coding NSMCE2 2 OTTHUMG00000164993.5 ncRNA_host +59242 chr8 HAVANA gene 125430321 125438405 4138.0 + 0 ENSG00000173334.3 protein_coding TRIB1 1 OTTHUMG00000165007.1 +59243 chr8 HAVANA gene 125466939 125541373 1415.0 + 0 ENSG00000253111.2 lincRNA AC091114.1 2 OTTHUMG00000165008.3 +59244 chr8 HAVANA gene 125749055 125750241 636.0 - 0 ENSG00000253470.1 lincRNA AC016074.1 2 OTTHUMG00000165024.1 +59245 chr8 ENSEMBL gene 125900951 125901054 104.0 + 0 ENSG00000206695.1 snRNA RNU6-442P 3 +59246 chr8 HAVANA gene 125922308 125951249 5724.0 - 0 ENSG00000245164.6 lincRNA LINC00861 2 OTTHUMG00000165025.1 +59247 chr8 HAVANA gene 125951861 125952314 454.0 - 0 ENSG00000253651.1 processed_pseudogene SOD1P3 1 OTTHUMG00000165026.1 pseudo_consens +59248 chr8 HAVANA gene 125998994 126001001 204.0 - 0 ENSG00000254227.1 lincRNA AC024681.2 2 OTTHUMG00000165027.1 +59249 chr8 HAVANA gene 126073046 126073532 487.0 - 0 ENSG00000253841.1 processed_pseudogene AC024681.1 2 OTTHUMG00000165028.1 +59250 chr8 HAVANA gene 126072587 126074231 1378.0 + 0 ENSG00000250563.1 processed_pseudogene KNOP1P5 1 OTTHUMG00000160537.1 pseudo_consens +59251 chr8 HAVANA gene 126174186 126175014 504.0 - 0 ENSG00000248720.1 processed_pseudogene RFPL4AP5 2 OTTHUMG00000160498.1 +59252 chr8 HAVANA gene 126325495 126329535 1422.0 + 0 ENSG00000244791.2 lincRNA AC087667.1 2 OTTHUMG00000165030.1 +59253 chr8 HAVANA gene 126474189 126492596 415.0 + 0 ENSG00000253427.1 lincRNA AC084116.2 2 OTTHUMG00000165031.1 +59254 chr8 HAVANA gene 126497385 126500440 1513.0 + 0 ENSG00000253220.2 lincRNA AC084116.1 2 OTTHUMG00000165032.2 +59255 chr8 ENSEMBL gene 126504763 126504869 107.0 + 0 ENSG00000207138.1 snRNA RNU6-869P 3 +59256 chr8 HAVANA gene 126518698 126522351 429.0 + 0 ENSG00000253530.1 lincRNA AC084116.3 2 OTTHUMG00000165033.1 +59257 chr8 HAVANA gene 126552442 126558393 5404.0 - 0 ENSG00000168672.3 protein_coding FAM84B 2 OTTHUMG00000165034.1 +59258 chr8 HAVANA gene 126582631 126583006 376.0 - 0 ENSG00000253543.1 processed_pseudogene AC083923.1 2 OTTHUMG00000165060.1 +59259 chr8 ENSEMBL gene 126671522 126671654 133.0 + 0 ENSG00000212451.1 snRNA RNU11-4P 3 +59260 chr8 HAVANA gene 126766876 126790637 292.0 - 0 ENSG00000253573.1 lincRNA AC024382.1 2 OTTHUMG00000165046.2 +59261 chr8 HAVANA gene 127086263 127087510 1248.0 - 0 ENSG00000224722.3 processed_pseudogene AC020688.1 1 OTTHUMG00000165063.1 pseudo_consens +59262 chr8 HAVANA gene 127079874 127092600 12727.0 + 0 ENSG00000282961.1 lincRNA PRNCR1 2 OTTHUMG00000191472.1 +59263 chr8 HAVANA gene 127072694 127227541 22208.0 - 0 ENSG00000254166.2 processed_transcript CASC19 2 OTTHUMG00000165065.7 +59264 chr8 HAVANA gene 127292233 127292440 208.0 + 0 ENSG00000271509.1 processed_pseudogene AC018714.1 1 OTTHUMG00000184577.1 pseudo_consens +59265 chr8 HAVANA gene 127400399 127402150 1752.0 + 0 ENSG00000280997.1 lincRNA CCAT2 2 OTTHUMG00000189734.1 +59266 chr8 HAVANA gene 126556323 127419050 16848.0 + 0 ENSG00000253438.3 antisense PCAT1 2 OTTHUMG00000165067.5 ncRNA_host,overlapping_locus +59267 chr8 HAVANA gene 127322183 127420066 4964.0 + 0 ENSG00000212993.5 protein_coding POU5F1B 2 OTTHUMG00000157807.4 overlapping_locus,retrogene +59268 chr8 HAVANA gene 127289817 127482139 2342.0 - 0 ENSG00000246228.6 antisense CASC8 2 OTTHUMG00000187906.1 +59269 chr8 HAVANA gene 127686343 127733967 4678.0 - 0 ENSG00000249375.7 lincRNA CASC11 2 OTTHUMG00000164870.2 +59270 chr8 HAVANA gene 127735434 127741434 3001.0 + 0 ENSG00000136997.17 protein_coding MYC 1 OTTHUMG00000128475.8 +59271 chr8 ENSEMBL gene 127794541 127794734 194.0 + 0 ENSG00000276443.1 misc_RNA RF02164 3 +59272 chr8 ENSEMBL gene 127795962 127796028 67.0 + 0 ENSG00000283710.1 miRNA MIR1204 3 +59273 chr8 ENSEMBL gene 127890626 127890720 95.0 + 0 ENSG00000278324.1 misc_RNA RF02166 3 +59274 chr8 HAVANA gene 127946559 127948723 2165.0 - 0 ENSG00000280055.1 TEC TMEM75 2 OTTHUMG00000187197.1 +59275 chr8 ENSEMBL gene 127960633 127960695 63.0 + 0 ENSG00000221771.1 miRNA MIR1205 3 +59276 chr8 ENSEMBL gene 127999131 127999294 164.0 + 0 ENSG00000207110.1 snRNA RNU1-106P 3 +59277 chr8 ENSEMBL gene 128008898 128008956 59.0 + 0 ENSG00000283200.1 miRNA MIR1206 3 +59278 chr8 HAVANA gene 128010188 128010428 241.0 - 0 ENSG00000278275.1 processed_pseudogene AC103705.1 1 OTTHUMG00000187750.1 pseudo_consens +59279 chr8 ENSEMBL gene 128010382 128010611 230.0 - 0 ENSG00000222501.1 snRNA RNU4-25P 3 +59280 chr8 ENSEMBL gene 128049152 128049238 87.0 + 0 ENSG00000221176.1 miRNA MIR1207 3 +59281 chr8 HAVANA gene 127794533 128101253 5493.0 + 0 ENSG00000249859.9 lincRNA PVT1 2 OTTHUMG00000164871.1 ncRNA_host +59282 chr8 ENSEMBL gene 128150116 128150188 73.0 + 0 ENSG00000221261.1 miRNA MIR1208 3 +59283 chr8 ENSEMBL gene 128220504 128220803 300.0 + 0 ENSG00000201782.1 misc_RNA RN7SKP226 3 +59284 chr8 HAVANA gene 128405269 128564679 4557.0 - 0 ENSG00000254275.6 processed_transcript LINC00824 2 OTTHUMG00000165050.1 +59285 chr8 HAVANA gene 129250967 129251138 172.0 + 0 ENSG00000253225.1 processed_pseudogene AC103833.1 2 OTTHUMG00000164847.1 +59286 chr8 ENSEMBL gene 129290983 129291275 293.0 + 0 ENSG00000222755.1 misc_RNA RN7SKP206 3 +59287 chr8 HAVANA gene 129415949 129445852 281.0 + 0 ENSG00000253926.1 lincRNA AC011257.1 2 OTTHUMG00000164849.1 +59288 chr8 ENSEMBL gene 129484057 129484142 86.0 - 0 ENSG00000263763.1 miRNA MIR3686 3 +59289 chr8 HAVANA gene 128634199 129683679 30265.0 - 0 ENSG00000229140.9 lincRNA CCDC26 2 OTTHUMG00000164848.2 ncRNA_host +59290 chr8 HAVANA gene 129685401 129723023 10728.0 - 0 ENSG00000285108.1 lincRNA AC103718.1 2 OTTHUMG00000192613.1 +59291 chr8 HAVANA gene 129728744 129730445 1122.0 + 0 ENSG00000224110.3 processed_pseudogene MTRF1LP2 1 OTTHUMG00000160430.1 pseudo_consens +59292 chr8 HAVANA gene 129748196 129786888 2934.0 - 0 ENSG00000147697.8 protein_coding GSDMC 2 OTTHUMG00000164851.1 +59293 chr8 HAVANA gene 129832301 129844504 917.0 + 0 ENSG00000254317.1 antisense AC022973.4 2 OTTHUMG00000164852.1 +59294 chr8 HAVANA gene 129864478 129865052 575.0 + 0 ENSG00000243402.1 processed_pseudogene AC022973.1 1 OTTHUMG00000158707.1 pseudo_consens +59295 chr8 ENSEMBL gene 129868590 129868716 127.0 - 0 ENSG00000200075.1 snoRNA RF00402 3 +59296 chr8 HAVANA gene 129890465 129901758 467.0 + 0 ENSG00000254263.1 lincRNA AC022973.3 2 OTTHUMG00000164853.1 +59297 chr8 HAVANA gene 129939856 129949394 549.0 + 0 ENSG00000253720.1 lincRNA AC022973.2 2 OTTHUMG00000164854.1 +59298 chr8 ENSEMBL gene 130004528 130004601 74.0 - 0 ENSG00000253043.1 snRNA RNU7-181P 3 +59299 chr8 ENSEMBL gene 130008334 130008453 120.0 - 0 ENSG00000264653.1 miRNA MIR5194 3 +59300 chr8 HAVANA gene 129839593 130017129 9132.0 - 0 ENSG00000153310.19 protein_coding FAM49B 1 OTTHUMG00000164805.4 ncRNA_host +59301 chr8 ENSEMBL gene 130069541 130069652 112.0 - 0 ENSG00000200304.1 snRNA RNU6-1255P 3 +59302 chr8 HAVANA gene 130082738 130084768 2031.0 - 0 ENSG00000280543.1 sense_intronic ASAP1-IT2 2 OTTHUMG00000189586.1 +59303 chr8 ENSEMBL gene 130162972 130163127 156.0 + 0 ENSG00000212342.1 snoRNA RF00586 3 +59304 chr8 HAVANA gene 130052104 130443660 8280.0 - 0 ENSG00000153317.14 protein_coding ASAP1 1 OTTHUMG00000164772.3 ncRNA_host +59305 chr8 HAVANA gene 130595299 130655712 2072.0 - 0 ENSG00000253656.1 lincRNA AC090987.1 2 OTTHUMG00000164773.1 +59306 chr8 HAVANA gene 130892070 130892785 474.0 - 0 ENSG00000253259.1 sense_intronic AC103726.1 2 OTTHUMG00000164757.1 overlapping_locus +59307 chr8 HAVANA gene 130935409 130949665 411.0 + 0 ENSG00000253992.1 antisense AC103726.2 2 OTTHUMG00000164758.1 +59308 chr8 HAVANA gene 130780301 131042426 5961.0 - 0 ENSG00000155897.9 protein_coding ADCY8 2 OTTHUMG00000164756.2 overlapping_locus +59309 chr8 HAVANA gene 131130388 131144881 491.0 - 0 ENSG00000253407.1 lincRNA AC087341.1 2 OTTHUMG00000164759.1 +59310 chr8 HAVANA gene 131308545 131317632 984.0 + 0 ENSG00000253507.5 lincRNA AC104257.1 2 OTTHUMG00000164760.1 +59311 chr8 ENSEMBL gene 131432776 131432869 94.0 - 0 ENSG00000252158.1 snoRNA RF00139 3 +59312 chr8 HAVANA gene 131712512 131712980 469.0 + 0 ENSG00000254255.1 processed_pseudogene AC060788.1 1 OTTHUMG00000164747.1 pseudo_consens +59313 chr8 HAVANA gene 131904088 132013642 6197.0 + 0 ENSG00000132294.14 protein_coding EFR3A 1 OTTHUMG00000150552.6 +59314 chr8 HAVANA gene 132024220 132059380 1782.0 - 0 ENSG00000253117.4 protein_coding OC90 2 OTTHUMG00000164672.1 overlapping_locus +59315 chr8 HAVANA gene 132024238 132085655 2413.0 - 0 ENSG00000258417.3 protein_coding AC100868.1 1 OTTHUMG00000170745.1 overlapping_locus +59316 chr8 HAVANA gene 132061486 132111159 6143.0 - 0 ENSG00000132297.11 protein_coding HHLA1 1 OTTHUMG00000140390.3 overlapping_locus +59317 chr8 HAVANA gene 132120858 132481019 12646.0 - 0 ENSG00000184156.16 protein_coding KCNQ3 2 OTTHUMG00000137472.6 +59318 chr8 HAVANA gene 132507962 132565246 3103.0 - 0 ENSG00000253521.2 lincRNA HPYR1 2 OTTHUMG00000164645.2 +59319 chr8 HAVANA gene 132571953 132675617 2778.0 - 0 ENSG00000129295.8 protein_coding LRRC6 1 OTTHUMG00000164646.3 +59320 chr8 HAVANA gene 132685007 132760712 3332.0 - 0 ENSG00000165071.14 protein_coding TMEM71 1 OTTHUMG00000164647.3 +59321 chr8 HAVANA gene 132826179 132826903 725.0 + 0 ENSG00000270137.1 sense_intronic AF230666.2 2 OTTHUMG00000184050.1 overlapping_locus +59322 chr8 HAVANA gene 132838117 132844298 1483.0 - 0 ENSG00000223697.3 antisense AF230666.1 2 OTTHUMG00000148655.3 +59323 chr8 HAVANA gene 132775358 132848807 20571.0 + 0 ENSG00000129292.20 protein_coding PHF20L1 1 OTTHUMG00000148656.6 overlapping_locus +59324 chr8 HAVANA gene 133002605 133003075 471.0 - 0 ENSG00000240237.1 processed_pseudogene AF305872.1 1 OTTHUMG00000158706.1 pseudo_consens +59325 chr8 ENSEMBL gene 133046481 133046581 101.0 - 0 ENSG00000276961.1 miRNA MIR7848 3 +59326 chr8 HAVANA gene 133036724 133103054 7637.0 - 0 ENSG00000155926.13 protein_coding SLA 1 OTTHUMG00000164439.3 ncRNA_host +59327 chr8 HAVANA gene 132866958 133134903 11132.0 + 0 ENSG00000042832.11 protein_coding TG 1 OTTHUMG00000164649.2 +59328 chr8 HAVANA gene 133191039 133231690 5190.0 + 0 ENSG00000104415.14 protein_coding WISP1 1 OTTHUMG00000164440.3 +59329 chr8 HAVANA gene 133237171 133302022 9823.0 - 0 ENSG00000104419.14 protein_coding NDRG1 1 OTTHUMG00000164441.3 +59330 chr8 HAVANA gene 133325997 133326404 408.0 + 0 ENSG00000243537.1 processed_pseudogene KC877373.1 1 OTTHUMG00000158698.2 pseudo_consens +59331 chr8 HAVANA gene 133392211 133392690 480.0 - 0 ENSG00000253638.1 processed_pseudogene AF186190.1 1 OTTHUMG00000164532.1 pseudo_consens +59332 chr8 HAVANA gene 133408006 133409107 1102.0 + 0 ENSG00000225259.4 processed_pseudogene ST13P6 2 OTTHUMG00000164533.1 +59333 chr8 HAVANA gene 133515506 133515745 240.0 + 0 ENSG00000283176.1 processed_pseudogene AC103706.2 2 OTTHUMG00000191738.1 +59334 chr8 HAVANA gene 133516184 133516268 85.0 + 0 ENSG00000283197.1 processed_pseudogene AC103706.3 2 OTTHUMG00000191739.1 +59335 chr8 HAVANA gene 133454848 133571940 8729.0 - 0 ENSG00000008513.15 protein_coding ST3GAL1 2 OTTHUMG00000164534.5 +59336 chr8 HAVANA gene 133573183 133573861 679.0 + 0 ENSG00000261220.2 lincRNA AC103706.1 2 OTTHUMG00000173496.2 +59337 chr8 ENSEMBL gene 133644598 133644725 128.0 - 0 ENSG00000212273.1 snoRNA RF00561 3 +59338 chr8 ENSEMBL gene 133668420 133668701 282.0 - 0 ENSG00000276193.1 misc_RNA RF00017 3 +59339 chr8 HAVANA gene 133754811 133755450 640.0 + 0 ENSG00000253970.1 processed_pseudogene MTND2P7 2 OTTHUMG00000164535.1 +59340 chr8 HAVANA gene 133755845 133756646 802.0 + 0 ENSG00000253916.1 processed_pseudogene MTCO1P49 2 OTTHUMG00000164536.1 +59341 chr8 HAVANA gene 133775551 133777352 1041.0 - 0 ENSG00000253165.1 lincRNA AC090821.1 2 OTTHUMG00000164538.1 +59342 chr8 HAVANA gene 133786093 133786268 176.0 - 0 ENSG00000254313.1 processed_pseudogene AC090821.2 2 OTTHUMG00000164539.1 +59343 chr8 HAVANA gene 133771409 133814537 566.0 + 0 ENSG00000253561.1 lincRNA AC133634.1 2 OTTHUMG00000164537.1 +59344 chr8 HAVANA gene 133886496 133902407 582.0 + 0 ENSG00000253593.2 lincRNA AC110741.1 2 OTTHUMG00000164540.2 +59345 chr8 HAVANA gene 133946677 133947335 659.0 + 0 ENSG00000277576.1 unprocessed_pseudogene AC110741.3 1 OTTHUMG00000187751.1 pseudo_consens +59346 chr8 HAVANA gene 133962992 133963259 268.0 - 0 ENSG00000271240.1 processed_pseudogene AC110741.2 1 OTTHUMG00000184576.1 pseudo_consens +59347 chr8 HAVANA gene 134211865 134320447 426.0 - 0 ENSG00000253627.1 lincRNA AC105180.1 2 OTTHUMG00000164320.1 +59348 chr8 ENSEMBL gene 134598071 134598149 79.0 + 0 ENSG00000276140.1 misc_RNA RF02211 3 +59349 chr8 ENSEMBL gene 134598318 134598518 201.0 + 0 ENSG00000277732.1 misc_RNA RF02212 3 +59350 chr8 ENSEMBL gene 134600257 134600336 80.0 + 0 ENSG00000278454.1 misc_RNA RF02213 3 +59351 chr8 HAVANA gene 134598071 134600689 939.0 + 0 ENSG00000248492.1 antisense ZFAT-AS1 2 OTTHUMG00000164323.1 ncRNA_host +59352 chr8 HAVANA gene 134673131 134673512 382.0 + 0 ENSG00000271048.1 processed_pseudogene AC087045.1 1 OTTHUMG00000184575.1 pseudo_consens +59353 chr8 HAVANA gene 134477788 134713049 8900.0 - 0 ENSG00000066827.15 protein_coding ZFAT 1 OTTHUMG00000164321.2 +59354 chr8 HAVANA gene 134722947 134723949 1003.0 + 0 ENSG00000272456.1 lincRNA AC087045.2 2 OTTHUMG00000185623.1 +59355 chr8 HAVANA gene 134764809 134767276 2468.0 + 0 ENSG00000278898.1 TEC AC087045.3 2 OTTHUMG00000172340.1 +59356 chr8 HAVANA gene 134783694 134785879 2186.0 - 0 ENSG00000279518.1 TEC AC083843.3 2 OTTHUMG00000172341.1 +59357 chr8 HAVANA gene 134792020 134798272 6253.0 - 0 ENSG00000259820.1 lincRNA AC083843.2 2 OTTHUMG00000164324.1 +59358 chr8 ENSEMBL gene 134800520 134800607 88.0 - 0 ENSG00000207582.1 miRNA MIR30B 3 +59359 chr8 ENSEMBL gene 134804876 134804945 70.0 - 0 ENSG00000199153.1 miRNA MIR30D 3 +59360 chr8 HAVANA gene 134832747 134834482 849.0 + 0 ENSG00000254028.1 lincRNA AC083843.1 2 OTTHUMG00000164325.1 +59361 chr8 HAVANA gene 134838069 134842637 519.0 + 0 ENSG00000253433.1 lincRNA NCRNA00250 2 OTTHUMG00000164326.1 +59362 chr8 HAVANA gene 134849935 134881899 2096.0 + 0 ENSG00000251218.1 lincRNA AC103764.1 2 OTTHUMG00000164327.1 +59363 chr8 HAVANA gene 134978827 134979279 453.0 - 0 ENSG00000244413.1 processed_pseudogene RPL23AP56 1 OTTHUMG00000158697.1 pseudo_consens +59364 chr8 HAVANA gene 135234131 135299719 1240.0 + 0 ENSG00000254083.5 lincRNA LINC01591 2 OTTHUMG00000164328.1 +59365 chr8 HAVANA gene 135455865 135456952 318.0 - 0 ENSG00000254372.1 antisense AC040914.1 2 OTTHUMG00000164166.1 +59366 chr8 HAVANA gene 135625185 135625981 797.0 - 0 ENSG00000253915.1 processed_pseudogene MAPRE1P1 1 OTTHUMG00000164123.1 pseudo_consens +59367 chr8 HAVANA gene 135457457 135656722 8645.0 + 0 ENSG00000131773.13 protein_coding KHDRBS3 2 OTTHUMG00000164164.4 +59368 chr8 ENSEMBL gene 135742343 135742495 153.0 - 0 ENSG00000199652.2 snRNA RNU1-35P 3 +59369 chr8 HAVANA gene 136237386 136241532 1050.0 - 0 ENSG00000285683.1 lincRNA AC023781.1 2 OTTHUMG00000192781.1 +59370 chr8 HAVANA gene 135859369 137092183 14681.0 + 0 ENSG00000254101.6 lincRNA LINC02055 2 OTTHUMG00000164139.3 +59371 chr8 ENSEMBL gene 137105352 137105458 107.0 + 0 ENSG00000206678.1 snRNA RNU6-144P 3 +59372 chr8 HAVANA gene 137424904 137425021 118.0 - 0 ENSG00000274572.1 unprocessed_pseudogene ZYXP1 2 OTTHUMG00000187758.1 +59373 chr8 HAVANA gene 137524755 137645564 1992.0 - 0 ENSG00000285817.1 lincRNA AC105213.1 2 OTTHUMG00000192684.1 +59374 chr8 HAVANA gene 137696724 137698467 1744.0 + 0 ENSG00000254076.1 processed_pseudogene AC110053.1 1 OTTHUMG00000164172.2 pseudo_consens +59375 chr8 HAVANA gene 137852327 137929044 541.0 + 0 ENSG00000254361.1 lincRNA AC046195.2 2 OTTHUMG00000164174.1 +59376 chr8 HAVANA gene 138063268 138073240 596.0 + 0 ENSG00000253988.1 lincRNA AC079015.1 1 OTTHUMG00000164175.1 +59377 chr8 HAVANA gene 137809444 138083570 4171.0 - 0 ENSG00000253288.1 lincRNA AC046195.1 2 OTTHUMG00000164173.2 +59378 chr8 HAVANA gene 138130023 138496822 13625.0 - 0 ENSG00000147724.11 protein_coding FAM135B 1 OTTHUMG00000149864.5 +59379 chr8 HAVANA gene 138588235 138914006 7830.0 - 0 ENSG00000169436.16 protein_coding COL22A1 2 OTTHUMG00000150035.2 +59380 chr8 HAVANA gene 139096305 139102830 485.0 - 0 ENSG00000253432.1 lincRNA AC027541.1 1 OTTHUMG00000164180.1 +59381 chr8 ENSEMBL gene 139108430 139108534 105.0 + 0 ENSG00000251744.1 snoRNA RF00402 3 +59382 chr8 HAVANA gene 139114193 139127953 552.0 - 0 ENSG00000253783.1 lincRNA AC100807.1 1 OTTHUMG00000164181.1 +59383 chr8 HAVANA gene 139460062 139463016 1037.0 - 0 ENSG00000254258.1 lincRNA AC087354.1 2 OTTHUMG00000164182.1 +59384 chr8 HAVANA gene 139508701 139508971 271.0 - 0 ENSG00000275078.1 unprocessed_pseudogene AC090093.1 1 OTTHUMG00000187759.1 pseudo_consens +59385 chr8 HAVANA gene 139600838 139704109 6784.0 - 0 ENSG00000169427.7 protein_coding KCNK9 1 OTTHUMG00000164186.7 +59386 chr8 HAVANA gene 139911238 139916620 549.0 + 0 ENSG00000253574.5 antisense AC021744.1 1 OTTHUMG00000164204.1 +59387 chr8 HAVANA gene 139931172 139933946 2775.0 + 0 ENSG00000250733.5 TEC C8orf17 2 OTTHUMG00000140391.2 +59388 chr8 HAVANA gene 140039756 140041037 1282.0 + 0 ENSG00000274064.1 processed_pseudogene AC040978.1 1 OTTHUMG00000187760.1 pseudo_consens +59389 chr8 HAVANA gene 140094894 140100543 5650.0 - 0 ENSG00000282164.3 sense_intronic PEG13 2 OTTHUMG00000191428.3 +59390 chr8 HAVANA gene 139727725 140458579 9673.0 - 0 ENSG00000167632.15 protein_coding TRAPPC9 2 OTTHUMG00000164187.9 +59391 chr8 HAVANA gene 140505813 140508043 2231.0 - 0 ENSG00000259891.1 antisense AC107375.1 2 OTTHUMG00000164214.2 +59392 chr8 HAVANA gene 140511298 140517137 3301.0 + 0 ENSG00000104472.9 protein_coding CHRAC1 2 OTTHUMG00000164207.2 +59393 chr8 HAVANA gene 140572142 140572812 671.0 - 0 ENSG00000279766.1 TEC AC067931.1 2 OTTHUMG00000164220.1 overlapping_locus +59394 chr8 HAVANA gene 140591684 140593201 1518.0 + 0 ENSG00000280326.1 TEC AC067931.2 2 OTTHUMG00000164221.1 +59395 chr8 HAVANA gene 140520156 140635619 15833.0 - 0 ENSG00000123908.11 protein_coding AGO2 1 OTTHUMG00000164232.6 overlapping_locus +59396 chr8 HAVANA gene 140636281 140638283 2003.0 + 0 ENSG00000280303.2 lincRNA ERICD 2 OTTHUMG00000164249.2 +59397 chr8 ENSEMBL gene 140732564 140732653 90.0 - 0 ENSG00000254324.3 miRNA MIR151A 3 +59398 chr8 HAVANA gene 140820599 140822414 1816.0 - 0 ENSG00000279786.1 TEC AC105235.1 2 OTTHUMG00000164255.1 overlapping_locus +59399 chr8 ENSEMBL gene 140940562 140940663 102.0 + 0 ENSG00000252864.1 rRNA_pseudogene RNA5SP278 3 +59400 chr8 HAVANA gene 140657900 141002216 13742.0 - 0 ENSG00000169398.19 protein_coding PTK2 1 OTTHUMG00000067438.25 ncRNA_host +59401 chr8 HAVANA gene 141055290 141060596 1132.0 + 0 ENSG00000253266.1 lincRNA AC100860.1 2 OTTHUMG00000164253.1 +59402 chr8 HAVANA gene 141126044 141129961 807.0 - 0 ENSG00000253210.1 antisense AC040970.1 1 OTTHUMG00000164774.1 +59403 chr8 HAVANA gene 141117278 141195808 14670.0 + 0 ENSG00000105339.10 protein_coding DENND3 1 OTTHUMG00000164775.12 +59404 chr8 HAVANA gene 141224288 141226947 2660.0 - 0 ENSG00000280035.1 TEC AC011676.5 2 OTTHUMG00000164476.1 overlapping_locus +59405 chr8 HAVANA gene 141252286 141253292 397.0 - 0 ENSG00000253307.1 antisense AC011676.1 2 OTTHUMG00000164479.1 overlapping_locus +59406 chr8 HAVANA gene 141254565 141256817 584.0 + 0 ENSG00000254019.1 antisense AC011676.2 1 OTTHUMG00000164478.1 +59407 chr8 HAVANA gene 141278228 141292862 294.0 + 0 ENSG00000254197.1 lincRNA AC011676.3 1 OTTHUMG00000164480.1 +59408 chr8 HAVANA gene 141207166 141308305 8608.0 - 0 ENSG00000022567.9 protein_coding SLC45A4 1 OTTHUMG00000164393.4 overlapping_locus +59409 chr8 HAVANA gene 141326130 141327137 413.0 + 0 ENSG00000254291.1 antisense AC011676.4 2 OTTHUMG00000164481.1 +59410 chr8 HAVANA gene 141340549 141344621 812.0 + 0 ENSG00000253595.5 antisense LINC01300 2 OTTHUMG00000164482.1 +59411 chr8 HAVANA gene 141353403 141355365 1963.0 - 0 ENSG00000261655.1 sense_overlapping AC100803.2 2 OTTHUMG00000164483.1 +59412 chr8 HAVANA gene 141356500 141367267 1515.0 - 0 ENSG00000204882.3 protein_coding GPR20 2 OTTHUMG00000164484.1 +59413 chr8 HAVANA gene 141389939 141392574 1380.0 - 0 ENSG00000244998.1 antisense AC100803.1 2 OTTHUMG00000164486.1 +59414 chr8 HAVANA gene 141391993 141432454 2877.0 + 0 ENSG00000184489.11 protein_coding PTP4A3 2 OTTHUMG00000164490.2 +59415 chr8 HAVANA gene 141434545 141437954 2961.0 + 0 ENSG00000271959.1 antisense AC100803.3 2 OTTHUMG00000185625.1 +59416 chr8 ENSEMBL gene 141447475 141447549 75.0 + 0 ENSG00000238854.1 snoRNA RF01161 3 +59417 chr8 HAVANA gene 141459075 141460031 957.0 + 0 ENSG00000253605.1 processed_pseudogene HNRNPA1P38 1 OTTHUMG00000164496.1 pseudo_consens +59418 chr8 HAVANA gene 141433829 141507230 4764.0 - 0 ENSG00000226807.6 polymorphic_pseudogene MROH5 2 OTTHUMG00000155944.6 +59419 chr8 HAVANA gene 141514638 141518737 648.0 + 0 ENSG00000226490.2 protein_coding AC138647.1 2 OTTHUMG00000156281.3 +59420 chr8 ENSEMBL gene 141786242 141786313 72.0 - 0 ENSG00000221768.2 miRNA MIR1302-7 3 +59421 chr8 HAVANA gene 141968091 141968841 751.0 - 0 ENSG00000254183.1 processed_pseudogene AC104417.1 1 OTTHUMG00000164382.1 pseudo_consens +59422 chr8 HAVANA gene 142089827 142091619 1793.0 + 0 ENSG00000261710.1 lincRNA AC104417.2 2 OTTHUMG00000164381.1 +59423 chr8 ENSEMBL gene 142176339 142176418 80.0 + 0 ENSG00000265247.1 miRNA MIR4472-1 3 +59424 chr8 HAVANA gene 142198356 142209003 1046.0 + 0 ENSG00000254008.1 antisense LINC00051 2 OTTHUMG00000164636.1 +59425 chr8 ENSEMBL gene 142247585 142247866 282.0 - 0 ENSG00000253602.2 misc_RNA RN7SL260P 3 +59426 chr8 HAVANA gene 142212080 142403240 4070.0 - 0 ENSG00000171045.14 protein_coding TSNARE1 2 OTTHUMG00000164867.5 ncRNA_host +59427 chr8 HAVANA gene 142403652 142407028 3377.0 + 0 ENSG00000261693.1 antisense AC134682.1 2 OTTHUMG00000164869.1 +59428 chr8 HAVANA gene 142449430 142545009 7356.0 + 0 ENSG00000181790.11 protein_coding ADGRB1 2 OTTHUMG00000164732.4 +59429 chr8 HAVANA gene 142567260 142577881 1578.0 - 0 ENSG00000232722.3 transcribed_unitary_pseudogene MROH4P 2 OTTHUMG00000154595.3 +59430 chr8 HAVANA gene 142611044 142614472 2991.0 - 0 ENSG00000198576.3 protein_coding ARC 2 OTTHUMG00000134310.3 +59431 chr8 HAVANA gene 142620373 142621064 692.0 + 0 ENSG00000261044.1 antisense AP006547.1 2 OTTHUMG00000173438.1 +59432 chr8 HAVANA gene 142638596 142640648 503.0 + 0 ENSG00000277332.1 antisense AC108002.2 2 OTTHUMG00000164826.2 +59433 chr8 HAVANA gene 142657460 142681968 11229.0 - 0 ENSG00000234616.8 protein_coding JRK 2 OTTHUMG00000160911.8 +59434 chr8 HAVANA gene 142670308 142682724 1763.0 + 0 ENSG00000167653.4 protein_coding PSCA 2 OTTHUMG00000162077.2 +59435 chr8 HAVANA gene 142700111 142705127 4049.0 + 0 ENSG00000160886.13 protein_coding LY6K 1 OTTHUMG00000164720.3 +59436 chr8 HAVANA gene 142702252 142726973 5684.0 - 0 ENSG00000253741.1 antisense LNCOC1 2 OTTHUMG00000164731.1 +59437 chr8 HAVANA gene 142727283 142727690 340.0 - 0 ENSG00000253806.1 antisense AC108002.1 2 OTTHUMG00000164674.1 +59438 chr8 HAVANA gene 142727203 142736927 3055.0 + 0 ENSG00000130193.7 protein_coding THEM6 2 OTTHUMG00000164673.1 +59439 chr8 HAVANA gene 142740944 142742411 537.0 - 0 ENSG00000126233.1 protein_coding SLURP1 2 OTTHUMG00000164685.1 +59440 chr8 HAVANA gene 142750150 142752534 594.0 - 0 ENSG00000197353.3 protein_coding LYPD2 2 OTTHUMG00000164686.1 +59441 chr8 HAVANA gene 142763116 142766427 670.0 + 0 ENSG00000253196.1 antisense AC083841.1 2 OTTHUMG00000164675.1 +59442 chr8 HAVANA gene 142764338 142769844 599.0 - 0 ENSG00000283992.1 protein_coding SLURP2 2 OTTHUMG00000164694.7 overlapping_locus +59443 chr8 HAVANA gene 142771197 142777810 5022.0 - 0 ENSG00000180155.19 protein_coding LYNX1 1 OTTHUMG00000191912.2 overlapping_locus +59444 chr8 HAVANA gene 142764334 142778224 1320.0 - 0 ENSG00000284505.1 protein_coding LYNX1-SLURP2 2 OTTHUMG00000191911.1 +59445 chr8 HAVANA gene 142784880 142786592 1553.0 - 0 ENSG00000167656.4 protein_coding LY6D 2 OTTHUMG00000164693.1 +59446 chr8 HAVANA gene 142797624 142806142 352.0 - 0 ENSG00000283686.2 unprocessed_pseudogene AC083841.4 2 OTTHUMG00000191706.2 +59447 chr8 HAVANA gene 142785374 142812120 602.0 + 0 ENSG00000253715.1 antisense AC083841.2 2 OTTHUMG00000164676.1 +59448 chr8 HAVANA gene 142834138 142834940 378.0 - 0 ENSG00000253728.5 antisense AC083841.3 2 OTTHUMG00000164669.1 +59449 chr8 HAVANA gene 142858354 142858797 444.0 + 0 ENSG00000253421.1 processed_pseudogene ZNHIT1P1 1 OTTHUMG00000164657.1 pseudo_consens,overlapping_locus +59450 chr8 HAVANA gene 142872356 142879846 4206.0 - 0 ENSG00000160882.11 protein_coding CYP11B1 1 OTTHUMG00000164637.2 +59451 chr8 HAVANA gene 142834247 142916506 940.0 + 0 ENSG00000104499.6 protein_coding GML 2 OTTHUMG00000164656.2 overlapping_locus +59452 chr8 HAVANA gene 142910559 142917843 2936.0 - 0 ENSG00000179142.2 protein_coding CYP11B2 2 OTTHUMG00000160254.1 +59453 chr8 HAVANA gene 142995850 142996482 633.0 + 0 ENSG00000253971.1 processed_pseudogene CDC42P3 1 OTTHUMG00000164753.1 pseudo_consens +59454 chr8 HAVANA gene 142981738 143018437 3853.0 - 0 ENSG00000247317.3 lincRNA LY6E-DT 1 OTTHUMG00000164752.1 +59455 chr8 HAVANA gene 143017982 143023832 2640.0 + 0 ENSG00000160932.10 protein_coding LY6E 1 OTTHUMG00000164754.6 +59456 chr8 HAVANA gene 143057060 143057816 429.0 - 0 ENSG00000250115.2 processed_pseudogene AK3P2 1 OTTHUMG00000160500.2 pseudo_consens +59457 chr8 HAVANA gene 143039209 143059942 2929.0 + 0 ENSG00000177335.10 processed_transcript C8orf31 1 OTTHUMG00000164771.2 +59458 chr8 HAVANA gene 143065915 143066587 344.0 - 0 ENSG00000243328.1 processed_pseudogene AC083982.1 1 OTTHUMG00000158696.1 pseudo_consens +59459 chr8 HAVANA gene 143080457 143083001 988.0 + 0 ENSG00000261667.1 protein_coding LY6L 2 OTTHUMG00000173037.1 +59460 chr8 HAVANA gene 143157914 143160711 1881.0 - 0 ENSG00000176956.12 protein_coding LY6H 2 OTTHUMG00000154890.2 +59461 chr8 HAVANA gene 143213193 143217170 2282.0 + 0 ENSG00000277494.1 protein_coding GPIHBP1 2 OTTHUMG00000164950.3 +59462 chr8 HAVANA gene 143246821 143262705 6910.0 + 0 ENSG00000181638.17 protein_coding ZFP41 1 OTTHUMG00000164951.5 overlapping_locus +59463 chr8 HAVANA gene 143247110 143276403 2897.0 + 0 ENSG00000264668.1 protein_coding AC138696.1 2 OTTHUMG00000179773.2 overlapping_locus +59464 chr8 HAVANA gene 143267433 143276931 3057.0 + 0 ENSG00000250571.6 protein_coding GLI4 1 OTTHUMG00000164952.6 overlapping_locus +59465 chr8 HAVANA gene 143280161 143281690 1405.0 - 0 ENSG00000253716.5 antisense MINCR 1 OTTHUMG00000164976.1 +59466 chr8 HAVANA gene 143290399 143290621 223.0 - 0 ENSG00000272172.1 antisense AC138696.2 2 OTTHUMG00000185627.1 +59467 chr8 HAVANA gene 143289676 143298061 4012.0 + 0 ENSG00000185730.7 protein_coding ZNF696 1 OTTHUMG00000164957.3 +59468 chr8 ENSEMBL gene 143350172 143350278 107.0 + 0 ENSG00000212221.1 snRNA RNU6-220P 3 +59469 chr8 HAVANA gene 143304384 143359979 6441.0 - 0 ENSG00000184428.12 protein_coding TOP1MT 1 OTTHUMG00000164979.7 +59470 chr8 HAVANA gene 143366631 143368548 1918.0 - 0 ENSG00000254389.3 antisense RHPN1-AS1 2 OTTHUMG00000165005.1 +59471 chr8 HAVANA gene 143368887 143384220 4172.0 + 0 ENSG00000158106.13 protein_coding RHPN1 2 OTTHUMG00000165006.2 +59472 chr8 HAVANA gene 143412749 143417054 544.0 + 0 ENSG00000253931.1 antisense AC105118.1 1 OTTHUMG00000165016.1 +59473 chr8 HAVANA gene 143417679 143419150 417.0 + 0 ENSG00000254338.1 antisense MAFA-AS1 1 OTTHUMG00000165017.1 +59474 chr8 HAVANA gene 143419182 143430406 2504.0 - 0 ENSG00000182759.3 protein_coding MAFA 1 OTTHUMG00000165037.2 +59475 chr8 HAVANA gene 143437655 143541453 3731.0 - 0 ENSG00000014164.6 protein_coding ZC3H3 1 OTTHUMG00000165127.2 +59476 chr8 ENSEMBL gene 143542110 143542398 289.0 + 0 ENSG00000275558.1 misc_RNA RN7SKP175 3 +59477 chr8 HAVANA gene 143542110 143542400 291.0 + 0 ENSG00000254144.3 antisense AC067930.1 2 OTTHUMG00000165015.1 ncRNA_host +59478 chr8 HAVANA gene 143541973 143549729 498.0 - 0 ENSG00000254859.1 antisense AC067930.4 1 OTTHUMG00000165128.1 +59479 chr8 HAVANA gene 143553207 143563062 5116.0 + 0 ENSG00000104518.10 protein_coding GSDMD 1 OTTHUMG00000165132.7 +59480 chr8 HAVANA gene 143566187 143572971 4408.0 - 0 ENSG00000204839.8 protein_coding MROH6 1 OTTHUMG00000165164.5 +59481 chr8 HAVANA gene 143573490 143577397 1173.0 + 0 ENSG00000255050.1 antisense AC067930.5 2 OTTHUMG00000165158.1 +59482 chr8 HAVANA gene 143574785 143578649 3079.0 - 0 ENSG00000147813.15 protein_coding NAPRT 2 OTTHUMG00000156942.5 +59483 chr8 HAVANA gene 143579636 143580670 431.0 + 0 ENSG00000254741.1 antisense AC067930.2 1 OTTHUMG00000165145.1 overlapping_locus +59484 chr8 HAVANA gene 143578358 143583304 4947.0 + 0 ENSG00000279605.1 TEC AC067930.6 2 OTTHUMG00000165144.1 overlapping_locus +59485 chr8 HAVANA gene 143579697 143599541 9390.0 - 0 ENSG00000104529.17 protein_coding EEF1D 1 OTTHUMG00000165191.23 +59486 chr8 HAVANA gene 143597835 143603224 5390.0 + 0 ENSG00000179886.5 protein_coding TIGD5 2 OTTHUMG00000162260.2 +59487 chr8 HAVANA gene 143603913 143609773 3244.0 - 0 ENSG00000104524.13 protein_coding PYCR3 1 OTTHUMG00000157010.6 +59488 chr8 HAVANA gene 143612618 143618048 3622.0 - 0 ENSG00000104522.15 protein_coding TSTA3 2 OTTHUMG00000165159.5 +59489 chr8 HAVANA gene 143632071 143633756 701.0 - 0 ENSG00000254812.1 antisense AC067930.3 1 OTTHUMG00000165185.1 +59490 chr8 HAVANA gene 143636013 143656418 7146.0 + 0 ENSG00000183309.11 protein_coding ZNF623 2 OTTHUMG00000165186.5 +59491 chr8 HAVANA gene 143696154 143698413 1963.0 + 0 ENSG00000181097.5 sense_intronic BREA2 2 OTTHUMG00000165147.1 overlapping_locus +59492 chr8 HAVANA gene 143706694 143708109 1320.0 - 0 ENSG00000255181.3 protein_coding CCDC166 2 OTTHUMG00000165148.3 +59493 chr8 HAVANA gene 143709007 143713584 374.0 - 0 ENSG00000254574.1 antisense AC105219.2 2 OTTHUMG00000165149.1 +59494 chr8 HAVANA gene 143684452 143713898 6327.0 + 0 ENSG00000181135.15 protein_coding ZNF707 1 OTTHUMG00000165146.4 +59495 chr8 HAVANA gene 143718246 143718891 299.0 - 0 ENSG00000254548.1 antisense AC105219.1 2 OTTHUMG00000165150.1 +59496 chr8 HAVANA gene 143716259 143722458 3056.0 + 0 ENSG00000181085.14 protein_coding MAPK15 2 OTTHUMG00000146450.3 +59497 chr8 ENSEMBL gene 143733083 143733153 71.0 - 0 ENSG00000265660.1 miRNA MIR4664 3 +59498 chr8 HAVANA gene 143723933 143733801 5654.0 - 0 ENSG00000180921.6 protein_coding FAM83H 2 OTTHUMG00000133559.2 ncRNA_host +59499 chr8 HAVANA gene 143758153 143771822 1809.0 - 0 ENSG00000254973.1 lincRNA AC105219.3 2 OTTHUMG00000165152.1 +59500 chr8 HAVANA gene 143734140 143790644 4982.0 + 0 ENSG00000203499.11 protein_coding IQANK1 2 OTTHUMG00000165153.2 +59501 chr8 ENSEMBL gene 143812957 143813042 86.0 - 0 ENSG00000284224.1 miRNA MIR937 3 +59502 chr8 HAVANA gene 143790920 143815379 6192.0 - 0 ENSG00000180900.18 protein_coding SCRIB 1 OTTHUMG00000165154.5 ncRNA_host +59503 chr8 HAVANA gene 143816344 143829859 5424.0 - 0 ENSG00000179950.13 protein_coding PUF60 2 OTTHUMG00000165155.2 +59504 chr8 HAVANA gene 143833270 143834063 316.0 - 0 ENSG00000255343.1 3prime_overlapping_ncRNA AC234917.1 1 OTTHUMG00000165156.1 overlapping_locus +59505 chr8 ENSEMBL gene 143837756 143837816 61.0 - 0 ENSG00000284142.1 miRNA MIR6845 3 +59506 chr8 HAVANA gene 143838779 143840256 682.0 + 0 ENSG00000285599.1 antisense AC234917.2 2 OTTHUMG00000193050.2 +59507 chr8 HAVANA gene 143833594 143840974 4924.0 - 0 ENSG00000185189.17 protein_coding NRBP2 2 OTTHUMG00000165157.2 ncRNA_host,overlapping_locus +59508 chr8 HAVANA gene 143857324 143878464 16002.0 - 0 ENSG00000261150.2 protein_coding EPPK1 2 OTTHUMG00000165206.3 +59509 chr8 ENSEMBL gene 143945191 143945279 89.0 - 0 ENSG00000207574.1 miRNA MIR661 3 +59510 chr8 HAVANA gene 143915147 143976734 16991.0 - 0 ENSG00000178209.15 protein_coding PLEC 2 OTTHUMG00000165291.5 ncRNA_host +59511 chr8 HAVANA gene 143990058 143993415 2527.0 + 0 ENSG00000178719.16 protein_coding GRINA 1 OTTHUMG00000165433.3 +59512 chr8 HAVANA gene 143977153 144012772 6033.0 - 0 ENSG00000178685.13 protein_coding PARP10 1 OTTHUMG00000165408.3 +59513 chr8 HAVANA gene 144012414 144047085 2007.0 + 0 ENSG00000186583.11 protein_coding SPATC1 2 OTTHUMG00000156976.2 +59514 chr8 HAVANA gene 144049079 144051522 1868.0 + 0 ENSG00000204791.10 transcribed_unitary_pseudogene SMPD5 2 OTTHUMG00000192569.1 +59515 chr8 ENSEMBL gene 144057321 144057380 60.0 - 0 ENSG00000277888.1 miRNA MIR6846 3 +59516 chr8 HAVANA gene 144051266 144063965 4452.0 - 0 ENSG00000178814.16 protein_coding OPLAH 2 OTTHUMG00000165435.7 ncRNA_host +59517 chr8 HAVANA gene 144078002 144079265 1264.0 - 0 ENSG00000255224.1 antisense AC109322.1 2 OTTHUMG00000165436.1 +59518 chr8 ENSEMBL gene 144079874 144079942 69.0 + 0 ENSG00000284200.1 miRNA MIR6847 3 +59519 chr8 HAVANA gene 144078626 144080647 1407.0 + 0 ENSG00000178896.8 protein_coding EXOSC4 1 OTTHUMG00000165437.2 ncRNA_host +59520 chr8 HAVANA gene 144082590 144086216 3268.0 + 0 ENSG00000197858.10 protein_coding GPAA1 2 OTTHUMG00000165438.4 +59521 chr8 HAVANA gene 144095027 144097525 1975.0 + 0 ENSG00000179091.4 protein_coding CYC1 2 OTTHUMG00000165242.1 +59522 chr8 HAVANA gene 144104499 144107611 2377.0 + 0 ENSG00000179632.9 protein_coding MAF1 2 OTTHUMG00000165244.3 +59523 chr8 HAVANA gene 144098633 144108124 2783.0 - 0 ENSG00000179526.16 protein_coding SHARPIN 2 OTTHUMG00000165243.1 +59524 chr8 HAVANA gene 144107726 144118315 8967.0 + 0 ENSG00000179698.13 protein_coding WDR97 2 OTTHUMG00000165245.2 +59525 chr8 HAVANA gene 144137769 144140843 2814.0 + 0 ENSG00000235173.6 protein_coding HGH1 2 OTTHUMG00000165246.1 +59526 chr8 HAVANA gene 144141214 144143664 907.0 - 0 ENSG00000227473.1 unitary_pseudogene TSSK5P 2 OTTHUMG00000154993.1 +59527 chr8 HAVANA gene 144148016 144261940 10903.0 + 0 ENSG00000179832.17 protein_coding MROH1 1 OTTHUMG00000165781.1 +59528 chr8 ENSEMBL gene 144262673 144262737 65.0 - 0 ENSG00000284054.1 miRNA MIR7112 3 +59529 chr8 HAVANA gene 144266560 144268481 999.0 + 0 ENSG00000260428.2 protein_coding SCX 2 OTTHUMG00000175582.2 +59530 chr8 HAVANA gene 144262102 144291370 3716.0 - 0 ENSG00000261236.7 protein_coding BOP1 2 OTTHUMG00000174603.4 ncRNA_host +59531 chr8 HAVANA gene 144291591 144314722 5307.0 + 0 ENSG00000185122.10 protein_coding HSF1 1 OTTHUMG00000174604.3 +59532 chr8 HAVANA gene 144314590 144315138 444.0 - 0 ENSG00000254690.1 antisense AC233992.1 2 OTTHUMG00000165271.1 +59533 chr8 ENSEMBL gene 144317246 144317315 70.0 - 0 ENSG00000284229.1 miRNA MIR6848 3 +59534 chr8 HAVANA gene 144314584 144326910 4131.0 - 0 ENSG00000185000.11 protein_coding DGAT1 2 OTTHUMG00000174606.3 ncRNA_host +59535 chr8 HAVANA gene 144330565 144336281 3779.0 - 0 ENSG00000261678.2 protein_coding SCRT1 2 OTTHUMG00000165229.4 +59536 chr8 HAVANA gene 144352219 144354914 2234.0 - 0 ENSG00000261587.2 protein_coding TMEM249 2 OTTHUMG00000165167.4 overlapping_locus +59537 chr8 HAVANA gene 144353228 144355609 1596.0 - 0 ENSG00000271698.1 protein_coding AC233992.2 2 OTTHUMG00000184228.2 overlapping_locus +59538 chr8 HAVANA gene 144355431 144359376 3375.0 - 0 ENSG00000182325.10 protein_coding FBXL6 2 OTTHUMG00000165169.2 overlapping_locus +59539 chr8 HAVANA gene 144354135 144361286 3077.0 + 0 ENSG00000185803.9 protein_coding SLC52A2 1 OTTHUMG00000165168.9 +59540 chr8 HAVANA gene 144373101 144393242 2742.0 + 0 ENSG00000173137.11 protein_coding ADCK5 2 OTTHUMG00000165190.5 +59541 chr8 ENSEMBL gene 144394149 144394230 82.0 - 0 ENSG00000284310.1 miRNA MIR939 3 +59542 chr8 ENSEMBL gene 144400086 144400165 80.0 - 0 ENSG00000284139.1 miRNA MIR1234 3 +59543 chr8 ENSEMBL gene 144400277 144400345 69.0 - 0 ENSG00000283770.1 miRNA MIR6849 3 +59544 chr8 HAVANA gene 144393229 144409349 6072.0 - 0 ENSG00000071894.16 protein_coding CPSF1 2 OTTHUMG00000174612.4 ncRNA_host +59545 chr8 HAVANA gene 144409492 144409976 485.0 + 0 ENSG00000272115.1 antisense AC233992.3 2 OTTHUMG00000185629.1 +59546 chr8 HAVANA gene 144409742 144416895 5033.0 - 0 ENSG00000147804.9 protein_coding SLC39A4 1 OTTHUMG00000165208.4 +59547 chr8 HAVANA gene 144423601 144428563 3769.0 - 0 ENSG00000160948.13 protein_coding VPS28 2 OTTHUMG00000165209.5 +59548 chr8 ENSEMBL gene 144435551 144435619 69.0 - 0 ENSG00000276598.1 miRNA MIR6893 3 +59549 chr8 HAVANA gene 144437675 144439971 428.0 + 0 ENSG00000232600.3 antisense TONSL-AS1 2 OTTHUMG00000153175.1 +59550 chr8 HAVANA gene 144428775 144444444 7111.0 - 0 ENSG00000160949.16 protein_coding TONSL 2 OTTHUMG00000153122.3 ncRNA_host +59551 chr8 HAVANA gene 144463817 144465101 429.0 + 0 ENSG00000254578.1 antisense AC084125.1 1 OTTHUMG00000165651.1 +59552 chr8 HAVANA gene 144449582 144465677 9787.0 - 0 ENSG00000187954.12 protein_coding CYHR1 1 OTTHUMG00000165171.3 +59553 chr8 HAVANA gene 144466043 144474202 4447.0 + 0 ENSG00000167702.12 protein_coding KIFC2 2 OTTHUMG00000165133.6 +59554 chr8 HAVANA gene 144473412 144476335 2503.0 - 0 ENSG00000160973.7 protein_coding FOXH1 2 OTTHUMG00000165172.1 +59555 chr8 HAVANA gene 144477969 144502121 5414.0 + 0 ENSG00000160972.9 protein_coding PPP1R16A 2 OTTHUMG00000165173.5 +59556 chr8 HAVANA gene 144495458 144505444 4894.0 - 0 ENSG00000255182.2 processed_transcript AC084125.2 1 OTTHUMG00000165174.2 overlapping_locus +59557 chr8 HAVANA gene 144502973 144507174 2756.0 + 0 ENSG00000167701.13 protein_coding GPT 2 OTTHUMG00000165176.2 +59558 chr8 HAVANA gene 144509074 144511213 1823.0 + 0 ENSG00000167700.8 protein_coding MFSD3 2 OTTHUMG00000165177.2 +59559 chr8 HAVANA gene 144512567 144513672 338.0 + 0 ENSG00000265393.1 antisense AC084125.4 2 OTTHUMG00000179578.1 +59560 chr8 HAVANA gene 144511288 144517845 4236.0 - 0 ENSG00000160957.12 protein_coding RECQL4 2 OTTHUMG00000165178.6 +59561 chr8 HAVANA gene 144517992 144525178 6136.0 + 0 ENSG00000160959.7 protein_coding LRRC14 2 OTTHUMG00000165179.3 +59562 chr8 HAVANA gene 144522377 144527032 1772.0 - 0 ENSG00000254402.6 protein_coding LRRC24 2 OTTHUMG00000165180.2 overlapping_locus +59563 chr8 HAVANA gene 144525733 144529132 3001.0 - 0 ENSG00000213563.6 protein_coding C8orf82 2 OTTHUMG00000165181.2 overlapping_locus +59564 chr8 HAVANA gene 144584040 144586488 398.0 + 0 ENSG00000255456.1 antisense AC084125.3 2 OTTHUMG00000165183.1 +59565 chr8 HAVANA gene 144529179 144605816 4888.0 - 0 ENSG00000147799.11 protein_coding ARHGAP39 2 OTTHUMG00000165182.1 +59566 chr8 ENSEMBL gene 144683169 144683464 296.0 + 0 ENSG00000274772.1 misc_RNA RF00017 3 +59567 chr8 HAVANA gene 144698614 144699185 572.0 - 0 ENSG00000254533.1 lincRNA AF186192.1 2 OTTHUMG00000165187.1 +59568 chr8 HAVANA gene 144700353 144708517 1680.0 + 0 ENSG00000255085.8 transcribed_unprocessed_pseudogene AF186192.2 1 OTTHUMG00000165188.3 +59569 chr8 HAVANA gene 144713899 144714845 947.0 + 0 ENSG00000263612.1 lincRNA AF186192.3 2 OTTHUMG00000179572.1 +59570 chr8 HAVANA gene 144720907 144756417 4939.0 - 0 ENSG00000198169.8 protein_coding ZNF251 2 OTTHUMG00000165189.3 +59571 chr8 ENSEMBL gene 144785298 144785588 291.0 + 0 ENSG00000244307.3 misc_RNA RN7SL395P 3 +59572 chr8 HAVANA gene 144773114 144787345 2222.0 - 0 ENSG00000196378.11 protein_coding ZNF34 2 OTTHUMG00000165248.2 +59573 chr8 ENSEMBL gene 144791931 144791991 61.0 - 0 ENSG00000283764.1 miRNA MIR6850 3 +59574 chr8 HAVANA gene 144789765 144792587 2159.0 - 0 ENSG00000161016.17 protein_coding RPL8 2 OTTHUMG00000165249.3 ncRNA_host +59575 chr8 HAVANA gene 144798876 144811169 5308.0 + 0 ENSG00000197363.9 protein_coding ZNF517 1 OTTHUMG00000165199.2 +59576 chr8 HAVANA gene 144827464 144847509 10296.0 + 0 ENSG00000147789.15 protein_coding ZNF7 1 OTTHUMG00000165200.2 +59577 chr8 HAVANA gene 144841042 144853736 2917.0 - 0 ENSG00000170619.9 protein_coding COMMD5 1 OTTHUMG00000165251.5 +59578 chr8 HAVANA gene 144876497 144902168 7357.0 - 0 ENSG00000196150.13 protein_coding ZNF250 1 OTTHUMG00000165252.3 +59579 chr8 HAVANA gene 144930358 144950888 5237.0 - 0 ENSG00000170631.14 protein_coding ZNF16 1 OTTHUMG00000165253.2 +59580 chr8 HAVANA gene 144992914 144994837 439.0 + 0 ENSG00000255164.1 antisense AF235103.1 2 OTTHUMG00000165202.1 +59581 chr8 HAVANA gene 144994886 144995540 655.0 + 0 ENSG00000254618.1 processed_pseudogene TMED10P1 1 OTTHUMG00000165203.1 pseudo_consens +59582 chr8 HAVANA gene 144973589 145002895 9148.0 - 0 ENSG00000196922.10 transcribed_unprocessed_pseudogene ZNF252P 1 OTTHUMG00000165201.6 +59583 chr8 HAVANA gene 145005561 145005906 346.0 - 0 ENSG00000255530.1 processed_pseudogene AF235103.2 2 OTTHUMG00000165205.1 +59584 chr8 HAVANA gene 145002811 145006046 3236.0 + 0 ENSG00000255559.1 antisense ZNF252P-AS1 2 OTTHUMG00000165204.1 +59585 chr8 HAVANA gene 145047860 145048889 1030.0 + 0 ENSG00000255000.1 processed_pseudogene AC139103.1 2 OTTHUMG00000165255.1 +59586 chr8 HAVANA gene 145052378 145066685 4440.0 + 0 ENSG00000182307.13 protein_coding C8orf33 2 OTTHUMG00000165256.2 +59587 chr9 HAVANA gene 12134 13783 654.0 + 0 ENSG00000236875.3 unprocessed_pseudogene DDX11L5 2 OTTHUMG00000019419.2 +59588 chr9 ENSEMBL gene 30144 30281 138.0 + 0 ENSG00000283921.1 miRNA MIR1302-9 3 +59589 chr9 HAVANA gene 27657 30891 2923.0 + 0 ENSG00000227518.5 antisense AL928970.1 2 OTTHUMG00000019418.1 ncRNA_host +59590 chr9 HAVANA gene 34394 37269 1312.0 - 0 ENSG00000218839.5 lincRNA FAM138C 2 OTTHUMG00000019422.4 +59591 chr9 HAVANA gene 52452 73374 394.0 - 0 ENSG00000284986.1 transcribed_unprocessed_pseudogene AL449043.2 2 OTTHUMG00000192384.2 overlapping_locus +59592 chr9 HAVANA gene 14521 73865 2270.0 - 0 ENSG00000181404.16 protein_coding WASHC1 2 OTTHUMG00000019420.4 overlapping_locus +59593 chr9 HAVANA gene 72674 88826 1361.0 + 0 ENSG00000277631.4 lincRNA PGM5P3-AS1 2 OTTHUMG00000019423.3 +59594 chr9 HAVANA gene 100804 102941 772.0 - 0 ENSG00000227917.2 lincRNA AL449043.1 2 OTTHUMG00000021018.2 +59595 chr9 HAVANA gene 112713 113754 416.0 - 0 ENSG00000231808.2 lincRNA LINC01388 2 OTTHUMG00000019424.2 +59596 chr9 HAVANA gene 116231 118204 1974.0 - 0 ENSG00000170122.5 protein_coding FOXD4 2 OTTHUMG00000021015.2 +59597 chr9 HAVANA gene 121038 179147 14170.0 - 0 ENSG00000172785.18 protein_coding CBWD1 2 OTTHUMG00000019425.5 +59598 chr9 HAVANA gene 212824 215893 3070.0 - 0 ENSG00000183784.7 protein_coding C9orf66 2 OTTHUMG00000021017.1 +59599 chr9 HAVANA gene 267966 273002 406.0 - 0 ENSG00000235880.1 antisense AL158832.1 1 OTTHUMG00000019426.1 +59600 chr9 HAVANA gene 214854 465259 13784.0 + 0 ENSG00000107099.15 protein_coding DOCK8 1 OTTHUMG00000078789.9 +59601 chr9 HAVANA gene 477750 478423 674.0 + 0 ENSG00000235330.2 transcribed_processed_pseudogene RPL12P25 1 OTTHUMG00000019430.2 pseudo_consens,overlapping_locus +59602 chr9 HAVANA gene 452492 492248 4016.0 - 0 ENSG00000227155.7 antisense AL161725.1 1 OTTHUMG00000019427.4 +59603 chr9 HAVANA gene 487774 495610 403.0 + 0 ENSG00000228115.1 sense_intronic AL161725.2 2 OTTHUMG00000019429.1 overlapping_locus +59604 chr9 HAVANA gene 547317 549531 450.0 + 0 ENSG00000226403.1 sense_intronic AL392089.1 2 OTTHUMG00000019431.1 overlapping_locus +59605 chr9 ENSEMBL gene 558826 558930 105.0 + 0 ENSG00000202172.1 snRNA RNU6-1327P 3 +59606 chr9 HAVANA gene 659986 660326 341.0 + 0 ENSG00000229875.1 processed_pseudogene EIF1P1 1 OTTHUMG00000019432.2 pseudo_consens,overlapping_locus +59607 chr9 HAVANA gene 673478 685555 1207.0 - 0 ENSG00000227914.3 antisense AL136979.1 2 OTTHUMG00000019433.3 +59608 chr9 HAVANA gene 470291 746106 11908.0 + 0 ENSG00000107104.18 protein_coding KANK1 2 OTTHUMG00000019434.6 ncRNA_host,overlapping_locus +59609 chr9 HAVANA gene 841690 969090 3253.0 + 0 ENSG00000137090.11 protein_coding DMRT1 1 OTTHUMG00000019435.2 +59610 chr9 HAVANA gene 976964 991731 2387.0 + 0 ENSG00000064218.4 protein_coding DMRT3 2 OTTHUMG00000019436.3 +59611 chr9 ENSEMBL gene 1001858 1001963 106.0 - 0 ENSG00000252991.1 snRNA RNU6-1073P 3 +59612 chr9 HAVANA gene 1011085 1011799 392.0 + 0 ENSG00000228783.1 processed_pseudogene AL358976.1 1 OTTHUMG00000019438.1 pseudo_consens +59613 chr9 HAVANA gene 1045625 1048641 3017.0 + 0 ENSG00000281769.1 lincRNA LINC01230 2 OTTHUMG00000189515.1 +59614 chr9 HAVANA gene 1049858 1057552 3560.0 + 0 ENSG00000173253.15 protein_coding DMRT2 2 OTTHUMG00000019437.3 +59615 chr9 HAVANA gene 1151807 1152140 334.0 - 0 ENSG00000224836.1 processed_pseudogene AL356498.1 1 OTTHUMG00000019441.1 pseudo_consens +59616 chr9 HAVANA gene 1164414 1164867 454.0 - 0 ENSG00000236594.2 processed_pseudogene RPS27AP14 1 OTTHUMG00000019440.2 pseudo_consens +59617 chr9 HAVANA gene 1328664 1328987 324.0 + 0 ENSG00000233575.2 processed_pseudogene AL358934.1 1 OTTHUMG00000019442.2 pseudo_consens +59618 chr9 ENSEMBL gene 1333837 1333953 117.0 + 0 ENSG00000202383.1 rRNA_pseudogene RNA5SP279 3 +59619 chr9 HAVANA gene 1977784 1978547 764.0 - 0 ENSG00000224092.1 processed_pseudogene AL591644.1 2 OTTHUMG00000019443.1 +59620 chr9 HAVANA gene 2041900 2046023 420.0 - 0 ENSG00000236199.1 antisense AL359076.1 2 OTTHUMG00000019444.1 +59621 chr9 ENSEMBL gene 2162763 2162953 191.0 - 0 ENSG00000222973.1 snRNA RNU2-25P 3 +59622 chr9 HAVANA gene 1980290 2193624 18595.0 + 0 ENSG00000080503.23 protein_coding SMARCA2 2 OTTHUMG00000019445.13 +59623 chr9 ENSEMBL gene 2228961 2229241 281.0 - 0 ENSG00000264615.2 misc_RNA RN7SL592P 3 +59624 chr9 HAVANA gene 2541097 2541635 206.0 + 0 ENSG00000231052.1 lincRNA AL353614.1 2 OTTHUMG00000019446.1 +59625 chr9 HAVANA gene 2421597 2643359 5989.0 - 0 ENSG00000236404.9 antisense VLDLR-AS1 2 OTTHUMG00000019448.3 +59626 chr9 HAVANA gene 2621834 2660053 9339.0 + 0 ENSG00000147852.15 protein_coding VLDLR 2 OTTHUMG00000019447.4 +59627 chr9 HAVANA gene 2717502 2730037 2186.0 + 0 ENSG00000168263.8 protein_coding KCNV2 2 OTTHUMG00000019449.1 +59628 chr9 HAVANA gene 2720469 2844241 2707.0 - 0 ENSG00000080608.9 protein_coding PUM3 2 OTTHUMG00000019450.4 +59629 chr9 HAVANA gene 2875442 2876427 986.0 - 0 ENSG00000236496.2 processed_pseudogene GPS2P1 1 OTTHUMG00000019451.2 pseudo_consens +59630 chr9 HAVANA gene 2900320 2900804 485.0 - 0 ENSG00000229184.2 processed_pseudogene ATP5PDP2 1 OTTHUMG00000019452.2 pseudo_consens +59631 chr9 HAVANA gene 2907073 3053408 1656.0 - 0 ENSG00000227835.8 transcribed_unprocessed_pseudogene CARM1P1 2 OTTHUMG00000019453.3 +59632 chr9 HAVANA gene 3181589 3198517 886.0 + 0 ENSG00000236511.1 lincRNA LINC01231 2 OTTHUMG00000019454.1 +59633 chr9 HAVANA gene 3364329 3364792 464.0 - 0 ENSG00000215297.3 processed_pseudogene AL354941.1 1 OTTHUMG00000019455.1 pseudo_consens,overlapping_locus +59634 chr9 HAVANA gene 3218297 3526004 11169.0 - 0 ENSG00000080298.15 protein_coding RFX3 2 OTTHUMG00000019456.2 overlapping_locus +59635 chr9 HAVANA gene 3647335 3648338 728.0 + 0 ENSG00000237359.1 lincRNA AL354977.2 2 OTTHUMG00000019458.1 overlapping_locus +59636 chr9 HAVANA gene 3684076 3689626 679.0 - 0 ENSG00000226669.2 lincRNA AL354977.1 2 OTTHUMG00000019460.2 +59637 chr9 HAVANA gene 3526723 3691814 1562.0 + 0 ENSG00000232104.3 lincRNA RFX3-AS1 2 OTTHUMG00000019457.3 +59638 chr9 HAVANA gene 3875584 3878809 243.0 + 0 ENSG00000236724.1 antisense AL137071.1 2 OTTHUMG00000153514.1 +59639 chr9 HAVANA gene 3898642 3901248 734.0 + 0 ENSG00000237009.2 antisense GLIS3-AS1 2 OTTHUMG00000019461.1 +59640 chr9 HAVANA gene 4070906 4071884 635.0 - 0 ENSG00000230001.1 sense_intronic AL359095.1 1 OTTHUMG00000019462.1 overlapping_locus +59641 chr9 HAVANA gene 4299390 4306046 873.0 + 0 ENSG00000228322.1 antisense AL162419.1 2 OTTHUMG00000019464.1 +59642 chr9 HAVANA gene 3824127 4348392 11558.0 - 0 ENSG00000107249.22 protein_coding GLIS3 2 OTTHUMG00000019463.6 overlapping_locus +59643 chr9 ENSEMBL gene 4386410 4386556 147.0 - 0 ENSG00000200941.1 snRNA RNU6-694P 3 +59644 chr9 HAVANA gene 4490444 4587469 3998.0 + 0 ENSG00000106688.11 protein_coding SLC1A1 2 OTTHUMG00000019468.2 +59645 chr9 HAVANA gene 4633027 4633756 730.0 + 0 ENSG00000225893.1 processed_pseudogene AL136231.1 1 OTTHUMG00000019470.1 pseudo_consens +59646 chr9 HAVANA gene 4662315 4665258 2944.0 + 0 ENSG00000205808.5 protein_coding PLPP6 2 OTTHUMG00000019466.2 +59647 chr9 HAVANA gene 4553386 4666674 7361.0 - 0 ENSG00000106686.16 protein_coding SPATA6L 1 OTTHUMG00000019469.3 +59648 chr9 HAVANA gene 4676600 4679502 613.0 - 0 ENSG00000273061.1 lincRNA CDC37L1-DT 2 OTTHUMG00000185906.2 +59649 chr9 HAVANA gene 4679559 4708398 3949.0 + 0 ENSG00000106993.11 protein_coding CDC37L1 2 OTTHUMG00000019465.1 +59650 chr9 HAVANA gene 4709559 4742043 4483.0 - 0 ENSG00000147853.16 protein_coding AK3 2 OTTHUMG00000019472.2 +59651 chr9 HAVANA gene 4768617 4769895 1279.0 - 0 ENSG00000270639.1 processed_pseudogene ECM1P1 1 OTTHUMG00000184620.2 pseudo_consens +59652 chr9 HAVANA gene 4781475 4782078 604.0 - 0 ENSG00000220105.2 processed_pseudogene AL353151.1 1 OTTHUMG00000019471.1 pseudo_consens +59653 chr9 HAVANA gene 4803788 4804972 1185.0 - 0 ENSG00000233186.2 processed_pseudogene KLF4P1 2 OTTHUMG00000019473.2 +59654 chr9 HAVANA gene 4850299 4850373 75.0 - 0 ENSG00000228165.1 antisense AL158147.1 2 OTTHUMG00000019477.1 +59655 chr9 ENSEMBL gene 4850297 4850375 79.0 + 0 ENSG00000199065.3 miRNA MIR101-2 3 +59656 chr9 HAVANA gene 4792869 4885917 4215.0 + 0 ENSG00000120158.11 protein_coding RCL1 2 OTTHUMG00000019474.4 ncRNA_host +59657 chr9 HAVANA gene 4944670 4945902 928.0 - 0 ENSG00000220937.3 processed_pseudogene HNRNPA1P41 1 OTTHUMG00000019475.2 pseudo_consens +59658 chr9 HAVANA gene 5040945 5041940 955.0 + 0 ENSG00000234534.1 processed_pseudogene CSNK1G2P1 1 OTTHUMG00000019483.1 pseudo_consens,overlapping_locus +59659 chr9 HAVANA gene 5084999 5086112 1114.0 - 0 ENSG00000182347.10 processed_pseudogene PDSS1P1 1 OTTHUMG00000019488.1 pseudo_consens +59660 chr9 HAVANA gene 5091093 5091604 512.0 + 0 ENSG00000227730.2 unprocessed_pseudogene MTND6P5 2 OTTHUMG00000019484.2 overlapping_locus +59661 chr9 HAVANA gene 5094139 5095014 876.0 + 0 ENSG00000228166.1 unprocessed_pseudogene MTND1P11 2 OTTHUMG00000019492.1 overlapping_locus +59662 chr9 HAVANA gene 5096666 5098193 1528.0 + 0 ENSG00000224083.1 unprocessed_pseudogene MTCO1P11 2 OTTHUMG00000019485.1 overlapping_locus +59663 chr9 HAVANA gene 5098341 5099325 680.0 + 0 ENSG00000235917.1 unprocessed_pseudogene MTCO2P11 2 OTTHUMG00000019480.1 overlapping_locus +59664 chr9 HAVANA gene 5099560 5100229 670.0 + 0 ENSG00000228097.1 unprocessed_pseudogene MTATP6P11 2 OTTHUMG00000019478.1 overlapping_locus +59665 chr9 HAVANA gene 5100236 5101009 774.0 + 0 ENSG00000237711.1 unprocessed_pseudogene MTCO3P11 2 OTTHUMG00000019479.1 overlapping_locus +59666 chr9 HAVANA gene 5107937 5109290 1354.0 + 0 ENSG00000236254.1 unprocessed_pseudogene MTND4P14 2 OTTHUMG00000019486.1 overlapping_locus +59667 chr9 HAVANA gene 5109496 5110762 1267.0 + 0 ENSG00000230225.1 unprocessed_pseudogene MTND5P14 2 OTTHUMG00000019481.1 overlapping_locus +59668 chr9 HAVANA gene 5110913 5112849 1937.0 + 0 ENSG00000236567.2 processed_pseudogene TCF3P1 1 OTTHUMG00000019487.2 pseudo_consens,overlapping_locus +59669 chr9 HAVANA gene 5113549 5114804 1256.0 + 0 ENSG00000254017.1 IG_C_pseudogene IGHEP2 2 OTTHUMG00000019482.2 overlapping_locus +59670 chr9 HAVANA gene 4984390 5128183 6170.0 + 0 ENSG00000096968.13 protein_coding JAK2 2 OTTHUMG00000019490.2 overlapping_locus +59671 chr9 HAVANA gene 5123880 5185668 1760.0 - 0 ENSG00000120210.7 protein_coding INSL6 2 OTTHUMG00000019489.5 +59672 chr9 HAVANA gene 5193339 5193558 220.0 - 0 ENSG00000237553.1 processed_pseudogene AL133547.1 2 OTTHUMG00000019493.2 +59673 chr9 HAVANA gene 5231419 5235304 1952.0 + 0 ENSG00000120211.4 protein_coding INSL4 2 OTTHUMG00000019494.2 +59674 chr9 HAVANA gene 5299868 5304969 1278.0 - 0 ENSG00000107014.8 protein_coding RLN2 2 OTTHUMG00000019496.4 +59675 chr9 HAVANA gene 5311444 5311716 273.0 + 0 ENSG00000214195.4 processed_pseudogene HMGN2P31 2 OTTHUMG00000019497.2 +59676 chr9 HAVANA gene 5334969 5339873 1102.0 - 0 ENSG00000107018.7 protein_coding RLN1 2 OTTHUMG00000019495.2 +59677 chr9 HAVANA gene 5351796 5352410 615.0 - 0 ENSG00000272866.1 lincRNA AL135786.2 2 OTTHUMG00000185907.1 +59678 chr9 HAVANA gene 5356312 5356525 214.0 - 0 ENSG00000231967.1 processed_pseudogene AL135786.1 2 OTTHUMG00000019498.1 +59679 chr9 HAVANA gene 5418373 5418976 604.0 - 0 ENSG00000214190.2 processed_pseudogene RNF152P1 2 OTTHUMG00000019499.2 overlapping_locus +59680 chr9 HAVANA gene 5357973 5437878 1493.0 - 0 ENSG00000107020.9 protein_coding PLGRKT 2 OTTHUMG00000019501.2 overlapping_locus +59681 chr9 HAVANA gene 5450503 5470566 4108.0 + 0 ENSG00000120217.13 protein_coding CD274 2 OTTHUMG00000019503.2 +59682 chr9 HAVANA gene 5510570 5571254 2365.0 + 0 ENSG00000197646.7 protein_coding PDCD1LG2 2 OTTHUMG00000019504.2 +59683 chr9 HAVANA gene 5584490 5588994 758.0 + 0 ENSG00000231509.1 lincRNA AL162253.1 2 OTTHUMG00000019502.2 +59684 chr9 HAVANA gene 5719021 5720244 543.0 - 0 ENSG00000225408.1 antisense AL136980.1 1 OTTHUMG00000019506.1 +59685 chr9 HAVANA gene 5629025 5776557 8591.0 + 0 ENSG00000107036.11 protein_coding RIC1 2 OTTHUMG00000019505.4 +59686 chr9 HAVANA gene 5765076 5833117 6528.0 - 0 ENSG00000099219.13 protein_coding ERMP1 2 OTTHUMG00000019508.5 +59687 chr9 HAVANA gene 5855781 5856426 646.0 - 0 ENSG00000223621.1 processed_pseudogene AK4P4 1 OTTHUMG00000019509.1 pseudo_consens +59688 chr9 HAVANA gene 5890802 5910606 3083.0 + 0 ENSG00000120215.9 protein_coding MLANA 2 OTTHUMG00000019510.1 +59689 chr9 HAVANA gene 5881596 6007901 7930.0 - 0 ENSG00000183354.11 protein_coding KIAA2026 2 OTTHUMG00000019507.6 +59690 chr9 ENSEMBL gene 6007826 6007904 79.0 + 0 ENSG00000263575.1 miRNA MIR4665 3 +59691 chr9 HAVANA gene 6011043 6015625 4583.0 - 0 ENSG00000137040.9 protein_coding RANBP6 2 OTTHUMG00000019512.4 retrogene +59692 chr9 HAVANA gene 6047360 6066714 499.0 + 0 ENSG00000228739.1 lincRNA AL162384.1 1 OTTHUMG00000019514.1 +59693 chr9 HAVANA gene 6195934 6197248 1004.0 + 0 ENSG00000237274.2 processed_pseudogene GTF3AP1 2 OTTHUMG00000019515.2 +59694 chr9 HAVANA gene 6215786 6257983 3253.0 + 0 ENSG00000137033.11 protein_coding IL33 2 OTTHUMG00000019516.1 +59695 chr9 HAVANA gene 6276640 6276974 335.0 + 0 ENSG00000228132.2 processed_pseudogene AL360221.1 1 OTTHUMG00000019517.2 pseudo_consens +59696 chr9 HAVANA gene 6278667 6279153 487.0 + 0 ENSG00000233846.2 processed_pseudogene SELENOTP1 1 OTTHUMG00000019519.1 pseudo_consens +59697 chr9 HAVANA gene 6328375 6331900 3465.0 + 0 ENSG00000170777.10 protein_coding TPD52L3 2 OTTHUMG00000019518.1 retrogene +59698 chr9 HAVANA gene 6415145 6449558 638.0 - 0 ENSG00000233367.1 antisense AL133480.1 2 OTTHUMG00000019520.1 +59699 chr9 HAVANA gene 6413151 6507054 9919.0 + 0 ENSG00000147854.16 protein_coding UHRF2 2 OTTHUMG00000019521.8 +59700 chr9 ENSEMBL gene 6542094 6542353 260.0 + 0 ENSG00000264530.2 misc_RNA RN7SL25P 3 +59701 chr9 HAVANA gene 6568844 6569360 517.0 + 0 ENSG00000237158.1 processed_pseudogene AL353718.1 1 OTTHUMG00000019522.1 pseudo_consens +59702 chr9 HAVANA gene 6639139 6639604 466.0 + 0 ENSG00000206147.5 processed_pseudogene RPL23AP57 1 OTTHUMG00000019525.1 pseudo_consens +59703 chr9 HAVANA gene 6532464 6645783 8939.0 - 0 ENSG00000178445.9 protein_coding GLDC 2 OTTHUMG00000019524.4 +59704 chr9 ENSEMBL gene 6661651 6661942 292.0 + 0 ENSG00000266863.2 misc_RNA RN7SL123P 3 +59705 chr9 HAVANA gene 6662424 6663792 734.0 + 0 ENSG00000229057.1 processed_pseudogene RPS3AP54 1 OTTHUMG00000019526.1 pseudo_consens,overlapping_locus +59706 chr9 HAVANA gene 6668999 6670008 1010.0 - 0 ENSG00000231381.2 processed_pseudogene RNF2P1 1 OTTHUMG00000019528.2 pseudo_consens +59707 chr9 HAVANA gene 6645956 6670635 526.0 + 0 ENSG00000236924.1 lincRNA AL162411.1 2 OTTHUMG00000019532.1 ncRNA_host,overlapping_locus +59708 chr9 HAVANA gene 6675284 6675614 331.0 + 0 ENSG00000232946.1 processed_pseudogene AL354707.3 1 OTTHUMG00000019529.2 pseudo_consens +59709 chr9 HAVANA gene 6704471 6707780 422.0 + 0 ENSG00000229611.1 lincRNA AL354707.2 1 OTTHUMG00000019527.1 +59710 chr9 HAVANA gene 6716495 6727438 2839.0 + 0 ENSG00000225489.6 lincRNA AL354707.1 2 OTTHUMG00000019530.3 overlapping_locus +59711 chr9 HAVANA gene 6734598 6735076 479.0 - 0 ENSG00000231108.2 processed_pseudogene PRELID3BP11 1 OTTHUMG00000019535.2 pseudo_consens +59712 chr9 HAVANA gene 6748703 6748981 279.0 - 0 ENSG00000256968.1 processed_pseudogene SNRPEP2 2 OTTHUMG00000019531.2 +59713 chr9 HAVANA gene 6834456 6835577 1122.0 + 0 ENSG00000230581.2 processed_pseudogene ACTG1P14 1 OTTHUMG00000019534.2 pseudo_consens,overlapping_locus +59714 chr9 HAVANA gene 6902670 6978859 553.0 + 0 ENSG00000224972.1 sense_intronic AL513412.1 2 OTTHUMG00000150500.1 overlapping_locus +59715 chr9 HAVANA gene 6720863 7175648 10323.0 + 0 ENSG00000107077.18 protein_coding KDM4C 2 OTTHUMG00000019536.6 overlapping_locus +59716 chr9 HAVANA gene 7177577 7203458 1315.0 + 0 ENSG00000285688.1 lincRNA AL161443.1 2 OTTHUMG00000192923.1 +59717 chr9 HAVANA gene 7477045 7478320 1276.0 - 0 ENSG00000230207.1 processed_pseudogene RPL4P5 1 OTTHUMG00000019537.1 pseudo_consens +59718 chr9 HAVANA gene 7597823 7598377 555.0 + 0 ENSG00000178654.11 processed_pseudogene PPIAP33 1 OTTHUMG00000019538.2 pseudo_consens +59719 chr9 HAVANA gene 7786105 7786688 584.0 - 0 ENSG00000273056.1 lincRNA AL354694.1 2 OTTHUMG00000185908.1 +59720 chr9 HAVANA gene 7796490 7888380 3000.0 - 0 ENSG00000137038.7 protein_coding DMAC1 2 OTTHUMG00000019539.1 +59721 chr9 HAVANA gene 7930827 7935137 196.0 - 0 ENSG00000226376.1 lincRNA AL135923.1 2 OTTHUMG00000019540.1 +59722 chr9 HAVANA gene 7960413 7961080 501.0 - 0 ENSG00000231902.1 lincRNA AL135923.2 2 OTTHUMG00000046176.1 +59723 chr9 HAVANA gene 8700595 8701552 486.0 - 0 ENSG00000235389.2 sense_intronic AL583805.2 2 OTTHUMG00000019542.2 overlapping_locus +59724 chr9 HAVANA gene 8713311 8713841 531.0 + 0 ENSG00000212695.5 processed_pseudogene AL583805.1 1 OTTHUMG00000019541.1 pseudo_consens +59725 chr9 ENSEMBL gene 8797135 8797194 60.0 + 0 ENSG00000239102.1 snRNA RNU7-185P 3 +59726 chr9 HAVANA gene 8858130 8862255 2494.0 + 0 ENSG00000225706.1 lincRNA PTPRD-AS1 2 OTTHUMG00000019543.1 +59727 chr9 HAVANA gene 8936079 8963077 572.0 + 0 ENSG00000234021.1 lincRNA AL596451.1 2 OTTHUMG00000019544.1 +59728 chr9 HAVANA gene 9090898 9091245 348.0 + 0 ENSG00000212829.8 processed_pseudogene RPS26P3 2 OTTHUMG00000019545.3 +59729 chr9 ENSEMBL gene 9442060 9442380 321.0 + 0 ENSG00000265735.2 misc_RNA RN7SL5P 3 +59730 chr9 HAVANA gene 9799423 9803784 383.0 + 0 ENSG00000230920.1 lincRNA AL513422.1 2 OTTHUMG00000019546.1 +59731 chr9 HAVANA gene 10532145 10532411 267.0 + 0 ENSG00000234360.1 processed_pseudogene AL135790.2 1 OTTHUMG00000019548.1 pseudo_consens +59732 chr9 HAVANA gene 8314246 10612723 11165.0 - 0 ENSG00000153707.16 protein_coding PTPRD 2 OTTHUMG00000021005.6 overlapping_locus +59733 chr9 HAVANA gene 10613202 10620420 2838.0 + 0 ENSG00000226717.2 lincRNA PTPRD-AS2 2 OTTHUMG00000019549.2 +59734 chr9 HAVANA gene 10631750 10632203 157.0 - 0 ENSG00000232035.1 lincRNA AL135790.1 2 OTTHUMG00000019550.1 +59735 chr9 HAVANA gene 10777357 10777525 169.0 + 0 ENSG00000227138.1 processed_pseudogene AL161788.1 1 OTTHUMG00000019552.1 pseudo_consens +59736 chr9 HAVANA gene 10829752 10830308 557.0 - 0 ENSG00000230589.1 processed_pseudogene IMP3P1 2 OTTHUMG00000019551.2 +59737 chr9 HAVANA gene 10948372 10948481 110.0 - 0 ENSG00000270372.1 lincRNA AL162413.1 2 OTTHUMG00000185124.1 +59738 chr9 HAVANA gene 11011748 11013096 1349.0 + 0 ENSG00000234146.1 processed_pseudogene AKAP8P1 1 OTTHUMG00000019553.1 pseudo_consens +59739 chr9 HAVANA gene 11275314 11276314 285.0 - 0 ENSG00000230365.1 lincRNA AL451129.1 2 OTTHUMG00000019554.1 +59740 chr9 HAVANA gene 11618496 11618621 126.0 - 0 ENSG00000275130.1 unprocessed_pseudogene AL592227.1 2 OTTHUMG00000187711.1 +59741 chr9 HAVANA gene 11618530 12058227 877.0 + 0 ENSG00000285784.1 lincRNA AL353595.1 2 OTTHUMG00000193132.1 +59742 chr9 HAVANA gene 12098660 12159147 561.0 - 0 ENSG00000224935.1 lincRNA AL589678.1 2 OTTHUMG00000019555.1 +59743 chr9 HAVANA gene 12287320 12288238 919.0 + 0 ENSG00000231491.2 processed_pseudogene JKAMPP1 1 OTTHUMG00000019556.2 pseudo_consens +59744 chr9 ENSEMBL gene 12300266 12300451 186.0 - 0 ENSG00000222581.1 snRNA RNU2-47P 3 +59745 chr9 HAVANA gene 12685439 12710290 3741.0 + 0 ENSG00000107165.12 protein_coding TYRP1 2 OTTHUMG00000021034.6 +59746 chr9 ENSEMBL gene 12764761 12765055 295.0 - 0 ENSG00000243115.3 misc_RNA RN7SL849P 3 +59747 chr9 HAVANA gene 12698554 12814345 1720.0 - 0 ENSG00000235448.2 antisense LURAP1L-AS1 2 OTTHUMG00000019558.2 ncRNA_host +59748 chr9 HAVANA gene 12775021 12822131 2132.0 + 0 ENSG00000153714.5 protein_coding LURAP1L 2 OTTHUMG00000019557.1 +59749 chr9 ENSEMBL gene 12885321 12885417 97.0 + 0 ENSG00000222658.1 misc_RNA RF00019 3 +59750 chr9 HAVANA gene 12972843 12973438 596.0 - 0 ENSG00000214121.4 processed_pseudogene PRDX1P1 1 OTTHUMG00000019559.2 pseudo_consens +59751 chr9 HAVANA gene 13021694 13022892 1199.0 - 0 ENSG00000234586.2 processed_pseudogene AL161449.1 1 OTTHUMG00000019560.2 pseudo_consens +59752 chr9 HAVANA gene 12958503 13034326 2469.0 - 0 ENSG00000285637.1 lincRNA AL161449.2 2 OTTHUMG00000192712.1 +59753 chr9 HAVANA gene 13274510 13279187 457.0 - 0 ENSG00000234740.1 sense_intronic AL162386.2 2 OTTHUMG00000019561.1 overlapping_locus +59754 chr9 HAVANA gene 13105704 13279590 11273.0 - 0 ENSG00000107186.16 protein_coding MPDZ 1 OTTHUMG00000021031.6 overlapping_locus +59755 chr9 HAVANA gene 13322806 13323450 645.0 - 0 ENSG00000223672.2 processed_pseudogene AL162386.1 2 OTTHUMG00000019562.2 +59756 chr9 HAVANA gene 13406380 13433053 2576.0 - 0 ENSG00000270547.5 lincRNA LINC01235 2 OTTHUMG00000185076.1 +59757 chr9 HAVANA gene 13446491 13487511 512.0 + 0 ENSG00000226197.2 lincRNA AL583785.1 2 OTTHUMG00000019563.2 +59758 chr9 HAVANA gene 13927971 13945610 387.0 + 0 ENSG00000205636.3 lincRNA LINC00583 2 OTTHUMG00000019564.1 +59759 chr9 HAVANA gene 13986175 13987909 1735.0 + 0 ENSG00000229268.1 processed_pseudogene PES1P2 1 OTTHUMG00000019565.1 pseudo_consens +59760 chr9 HAVANA gene 14025971 14030115 436.0 + 0 ENSG00000235533.1 lincRNA AL360089.1 2 OTTHUMG00000019566.1 +59761 chr9 HAVANA gene 14040716 14041861 1146.0 - 0 ENSG00000223568.1 processed_pseudogene RPL3P11 1 OTTHUMG00000019567.2 pseudo_consens +59762 chr9 HAVANA gene 14068932 14069417 486.0 + 0 ENSG00000213954.3 processed_pseudogene ATP5PDP3 1 OTTHUMG00000019568.2 pseudo_consens +59763 chr9 HAVANA gene 14204248 14205039 792.0 + 0 ENSG00000234982.1 processed_pseudogene AL441963.1 1 OTTHUMG00000019569.1 pseudo_consens +59764 chr9 HAVANA gene 14317085 14357908 1054.0 + 0 ENSG00000225472.1 antisense AL136366.1 2 OTTHUMG00000019570.1 +59765 chr9 HAVANA gene 14081843 14398983 12765.0 - 0 ENSG00000147862.16 protein_coding NFIB 1 OTTHUMG00000021027.7 +59766 chr9 HAVANA gene 14531916 14532042 127.0 - 0 ENSG00000237137.1 processed_pseudogene AL159169.1 2 OTTHUMG00000019572.1 +59767 chr9 HAVANA gene 14586766 14587326 561.0 - 0 ENSG00000273399.2 lincRNA AL159169.3 2 OTTHUMG00000185910.2 +59768 chr9 HAVANA gene 14588797 14590065 1269.0 - 0 ENSG00000272871.1 lincRNA AL159169.2 2 OTTHUMG00000185911.1 +59769 chr9 HAVANA gene 14593577 14594200 624.0 + 0 ENSG00000229029.2 processed_pseudogene CDCA4P1 1 OTTHUMG00000019571.2 pseudo_consens +59770 chr9 HAVANA gene 14611071 14693471 9426.0 - 0 ENSG00000175893.11 protein_coding ZDHHC21 2 OTTHUMG00000019573.2 +59771 chr9 HAVANA gene 14719724 14722717 1215.0 - 0 ENSG00000147869.4 protein_coding CER1 2 OTTHUMG00000021022.1 +59772 chr9 HAVANA gene 14790635 14791158 524.0 + 0 ENSG00000283647.1 antisense AL512643.1 2 OTTHUMG00000191616.1 +59773 chr9 ENSEMBL gene 14850429 14850535 107.0 + 0 ENSG00000199814.1 snRNA RNU6-1260P 3 +59774 chr9 HAVANA gene 14734666 14910995 10762.0 - 0 ENSG00000164946.19 protein_coding FREM1 2 OTTHUMG00000019575.6 +59775 chr9 HAVANA gene 14921337 14922334 998.0 - 0 ENSG00000214110.3 processed_pseudogene LDHAP4 1 OTTHUMG00000019577.2 pseudo_consens +59776 chr9 HAVANA gene 14993312 15019729 1188.0 + 0 ENSG00000215237.6 unprocessed_pseudogene AL592293.1 2 OTTHUMG00000019578.2 +59777 chr9 HAVANA gene 15055057 15056052 996.0 + 0 ENSG00000234297.2 processed_pseudogene AL592293.2 1 OTTHUMG00000019580.2 pseudo_consens +59778 chr9 ENSEMBL gene 15143289 15143386 98.0 + 0 ENSG00000251960.1 snRNA RNU6-559P 3 +59779 chr9 HAVANA gene 14987302 15146401 2803.0 - 0 ENSG00000232000.2 transcribed_unprocessed_pseudogene CLCN3P1 2 OTTHUMG00000019579.3 +59780 chr9 HAVANA gene 15163622 15307360 12208.0 - 0 ENSG00000155158.20 protein_coding TTC39B 1 OTTHUMG00000019581.7 +59781 chr9 HAVANA gene 15361393 15362134 742.0 + 0 ENSG00000215236.3 processed_pseudogene RPL7P33 1 OTTHUMG00000019582.1 pseudo_consens +59782 chr9 ENSEMBL gene 15431899 15432006 108.0 - 0 ENSG00000251834.1 snRNA RNU6-319P 3 +59783 chr9 HAVANA gene 15422704 15465953 6684.0 + 0 ENSG00000164975.15 protein_coding SNAPC3 2 OTTHUMG00000019583.5 +59784 chr9 HAVANA gene 15464066 15511019 6768.0 - 0 ENSG00000164985.14 protein_coding PSIP1 2 OTTHUMG00000021021.2 +59785 chr9 HAVANA gene 15524576 15524707 132.0 - 0 ENSG00000278754.1 processed_pseudogene AL513423.1 1 OTTHUMG00000187712.1 pseudo_consens +59786 chr9 ENSEMBL gene 15525782 15526081 300.0 - 0 ENSG00000240613.3 misc_RNA RN7SL98P 3 +59787 chr9 HAVANA gene 15527133 15527683 551.0 - 0 ENSG00000213362.3 processed_pseudogene FTH1P12 1 OTTHUMG00000019586.1 pseudo_consens +59788 chr9 ENSEMBL gene 15544188 15544294 107.0 + 0 ENSG00000207433.1 snRNA RNU6-246P 3 +59789 chr9 HAVANA gene 15588355 15588615 261.0 + 0 ENSG00000231376.1 processed_pseudogene HMGN2P16 2 OTTHUMG00000019585.2 overlapping_locus +59790 chr9 ENSEMBL gene 15776181 15776286 106.0 - 0 ENSG00000207360.1 snRNA RNU6-14P 3 +59791 chr9 HAVANA gene 15553086 16061663 12153.0 + 0 ENSG00000164989.16 protein_coding CCDC171 2 OTTHUMG00000019584.6 overlapping_locus +59792 chr9 HAVANA gene 16203935 16410990 627.0 - 0 ENSG00000205549.9 protein_coding C9orf92 2 OTTHUMG00000019588.3 +59793 chr9 HAVANA gene 16473188 16476237 414.0 + 0 ENSG00000231756.1 antisense AL449983.1 1 OTTHUMG00000019589.1 +59794 chr9 HAVANA gene 16625676 16626390 455.0 + 0 ENSG00000230694.1 antisense AL450003.1 1 OTTHUMG00000019590.1 +59795 chr9 HAVANA gene 16726814 16727524 428.0 + 0 ENSG00000234779.1 antisense BNC2-AS1 2 OTTHUMG00000019591.1 +59796 chr9 HAVANA gene 16775573 16775845 273.0 - 0 ENSG00000233551.2 processed_pseudogene LSM1P1 1 OTTHUMG00000019592.2 pseudo_consens,overlapping_locus +59797 chr9 HAVANA gene 16409503 16870843 15323.0 - 0 ENSG00000173068.17 protein_coding BNC2 2 OTTHUMG00000019593.12 overlapping_locus +59798 chr9 HAVANA gene 16982723 16983459 219.0 - 0 ENSG00000285169.1 lincRNA AL358117.1 2 OTTHUMG00000192359.1 +59799 chr9 ENSEMBL gene 17053901 17054204 304.0 + 0 ENSG00000241152.3 misc_RNA RN7SL720P 3 +59800 chr9 HAVANA gene 17096301 17096446 146.0 - 0 ENSG00000226470.1 processed_pseudogene RPS29P33 1 OTTHUMG00000019595.1 pseudo_consens +59801 chr9 HAVANA gene 17108304 17108604 301.0 - 0 ENSG00000237083.1 processed_pseudogene AL162725.1 2 OTTHUMG00000019596.1 +59802 chr9 HAVANA gene 16917511 17114122 4135.0 + 0 ENSG00000237153.3 lincRNA AL162725.2 2 OTTHUMG00000019594.4 ncRNA_host +59803 chr9 HAVANA gene 17447145 17448543 1399.0 - 0 ENSG00000224488.1 processed_pseudogene SAMM50P1 1 OTTHUMG00000019598.1 pseudo_consens +59804 chr9 HAVANA gene 17134982 17503923 11064.0 + 0 ENSG00000044459.14 protein_coding CNTLN 2 OTTHUMG00000019599.5 +59805 chr9 HAVANA gene 17589161 17591318 2007.0 - 0 ENSG00000228810.1 processed_pseudogene PABPC1P11 1 OTTHUMG00000019600.1 pseudo_consens +59806 chr9 HAVANA gene 17579082 17797129 2682.0 + 0 ENSG00000107295.9 protein_coding SH3GL2 2 OTTHUMG00000019601.1 +59807 chr9 HAVANA gene 18360597 18362220 237.0 - 0 ENSG00000227167.1 lincRNA AL442638.1 2 OTTHUMG00000019602.1 +59808 chr9 ENSEMBL gene 18573306 18573379 74.0 + 0 ENSG00000264638.1 miRNA MIR3152 3 +59809 chr9 ENSEMBL gene 18651147 18651450 304.0 + 0 ENSG00000252960.1 misc_RNA RN7SKP258 3 +59810 chr9 HAVANA gene 18717974 18718526 553.0 - 0 ENSG00000236857.3 processed_pseudogene RAP1BP1 1 OTTHUMG00000019603.3 pseudo_consens +59811 chr9 HAVANA gene 17906563 18910950 13652.0 + 0 ENSG00000178031.16 protein_coding ADAMTSL1 1 OTTHUMG00000019604.10 ncRNA_host +59812 chr9 HAVANA gene 19026892 19028129 1238.0 + 0 ENSG00000236680.1 processed_pseudogene AL356000.1 1 OTTHUMG00000019608.1 pseudo_consens +59813 chr9 HAVANA gene 18858906 19049358 9081.0 - 0 ENSG00000155875.14 protein_coding SAXO1 1 OTTHUMG00000019609.5 +59814 chr9 HAVANA gene 19049395 19050983 1589.0 + 0 ENSG00000155876.5 protein_coding RRAGA 2 OTTHUMG00000019621.1 retrogene +59815 chr9 ENSEMBL gene 19063656 19063786 131.0 - 0 ENSG00000251733.1 scaRNA SCARNA8 3 +59816 chr9 ENSEMBL gene 19073843 19073946 104.0 + 0 ENSG00000252943.1 snRNA RNU6-264P 3 +59817 chr9 ENSEMBL gene 19089593 19089688 96.0 + 0 ENSG00000201118.1 misc_RNA RF00019 3 +59818 chr9 HAVANA gene 19053143 19103119 7932.0 - 0 ENSG00000147874.10 protein_coding HAUS6 2 OTTHUMG00000019622.3 ncRNA_host +59819 chr9 HAVANA gene 19108375 19149290 5086.0 - 0 ENSG00000147872.9 protein_coding PLIN2 2 OTTHUMG00000019624.2 +59820 chr9 HAVANA gene 19200335 19201046 712.0 - 0 ENSG00000232176.1 processed_pseudogene AL161909.1 2 OTTHUMG00000019625.1 +59821 chr9 HAVANA gene 19291337 19292576 409.0 - 0 ENSG00000232978.2 antisense AL161909.2 1 OTTHUMG00000019626.2 +59822 chr9 HAVANA gene 19371386 19371945 560.0 - 0 ENSG00000272842.1 antisense AL391834.1 2 OTTHUMG00000185919.1 +59823 chr9 HAVANA gene 19230435 19373545 8745.0 + 0 ENSG00000137145.20 protein_coding DENND4C 1 OTTHUMG00000019627.6 +59824 chr9 HAVANA gene 19375451 19375996 546.0 + 0 ENSG00000273226.1 antisense AL391834.2 2 OTTHUMG00000185921.1 +59825 chr9 HAVANA gene 19375715 19380254 2714.0 - 0 ENSG00000137154.12 protein_coding RPS6 2 OTTHUMG00000019642.2 +59826 chr9 HAVANA gene 19383217 19383887 345.0 - 0 ENSG00000234853.2 processed_pseudogene NDUFA5P3 1 OTTHUMG00000019641.2 pseudo_consens +59827 chr9 HAVANA gene 19386927 19408532 803.0 - 0 ENSG00000285911.1 bidirectional_promoter_lncRNA AL391834.3 2 OTTHUMG00000193095.1 +59828 chr9 HAVANA gene 19409059 19452020 2238.0 + 0 ENSG00000177076.5 protein_coding ACER2 2 OTTHUMG00000019644.1 +59829 chr9 HAVANA gene 19453209 19455173 1965.0 + 0 ENSG00000260912.1 sense_overlapping AL158206.1 2 OTTHUMG00000175502.1 +59830 chr9 HAVANA gene 19460926 19464524 750.0 - 0 ENSG00000231909.7 transcribed_processed_pseudogene MAP1LC3BP1 1 OTTHUMG00000019643.3 pseudo_consens +59831 chr9 HAVANA gene 19705338 19705655 318.0 + 0 ENSG00000232158.1 processed_pseudogene C11orf98P1 1 OTTHUMG00000019645.1 pseudo_consens +59832 chr9 HAVANA gene 19507452 19786928 10749.0 - 0 ENSG00000155886.11 protein_coding SLC24A2 2 OTTHUMG00000019646.2 +59833 chr9 HAVANA gene 19895800 19895973 174.0 - 0 ENSG00000276667.1 unprocessed_pseudogene AL158077.1 2 OTTHUMG00000187715.1 +59834 chr9 HAVANA gene 19926094 19929937 3844.0 + 0 ENSG00000261402.1 lincRNA AL591222.1 2 OTTHUMG00000175790.1 +59835 chr9 HAVANA gene 19957394 19958147 754.0 - 0 ENSG00000270712.1 processed_pseudogene AL591222.2 1 OTTHUMG00000184627.1 pseudo_consens +59836 chr9 HAVANA gene 19967239 19967994 756.0 - 0 ENSG00000277711.1 processed_pseudogene AL591222.3 1 OTTHUMG00000187717.1 pseudo_consens +59837 chr9 HAVANA gene 20331446 20332277 832.0 + 0 ENSG00000237434.1 processed_pseudogene AL512635.1 1 OTTHUMG00000019647.2 pseudo_consens +59838 chr9 ENSEMBL gene 20411148 20411238 91.0 - 0 ENSG00000263790.1 miRNA MIR4473 3 +59839 chr9 ENSEMBL gene 20418321 20418427 107.0 + 0 ENSG00000222202.1 snRNA RNU4-26P 3 +59840 chr9 ENSEMBL gene 20502265 20502342 78.0 - 0 ENSG00000264941.1 miRNA MIR4474 3 +59841 chr9 HAVANA gene 20532552 20533339 788.0 + 0 ENSG00000237088.1 processed_pseudogene AL163193.1 1 OTTHUMG00000019648.1 pseudo_consens +59842 chr9 HAVANA gene 20341665 20622543 8129.0 - 0 ENSG00000171843.15 protein_coding MLLT3 2 OTTHUMG00000019650.3 ncRNA_host +59843 chr9 HAVANA gene 20683304 20684688 423.0 - 0 ENSG00000227071.1 lincRNA FOCAD-AS1 1 OTTHUMG00000019649.1 +59844 chr9 ENSEMBL gene 20716105 20716188 84.0 + 0 ENSG00000207609.3 miRNA MIR491 3 +59845 chr9 ENSEMBL gene 20786927 20787055 129.0 + 0 ENSG00000202189.1 snoRNA SNORA30B 3 +59846 chr9 HAVANA gene 20658309 20995955 10036.0 + 0 ENSG00000188352.12 protein_coding FOCAD 1 OTTHUMG00000066930.4 ncRNA_host +59847 chr9 HAVANA gene 20999515 21031636 9152.0 - 0 ENSG00000188921.13 protein_coding HACD4 2 OTTHUMG00000021016.4 +59848 chr9 HAVANA gene 21058771 21059323 553.0 - 0 ENSG00000230208.1 processed_pseudogene IFNNP1 2 OTTHUMG00000019655.1 +59849 chr9 HAVANA gene 21077105 21077963 859.0 - 0 ENSG00000171855.6 protein_coding IFNB1 2 OTTHUMG00000019652.1 +59850 chr9 HAVANA gene 21106543 21106836 294.0 + 0 ENSG00000225027.2 processed_pseudogene IFNWP4 2 OTTHUMG00000019654.2 +59851 chr9 HAVANA gene 21135598 21136350 594.0 - 0 ENSG00000275980.1 processed_pseudogene AL390882.1 2 OTTHUMG00000187719.1 +59852 chr9 HAVANA gene 21140214 21142145 1932.0 - 0 ENSG00000177047.6 protein_coding IFNW1 2 OTTHUMG00000019656.1 +59853 chr9 ENSEMBL gene 21160235 21160336 102.0 - 0 ENSG00000199635.1 misc_RNA RF00019 3 +59854 chr9 HAVANA gene 21165637 21166660 1024.0 - 0 ENSG00000137080.4 protein_coding IFNA21 2 OTTHUMG00000019653.1 +59855 chr9 HAVANA gene 21178589 21179188 600.0 - 0 ENSG00000232281.2 unprocessed_pseudogene IFNWP15 2 OTTHUMG00000019657.2 +59856 chr9 HAVANA gene 21186694 21187671 978.0 - 0 ENSG00000236637.4 protein_coding IFNA4 2 OTTHUMG00000019660.1 +59857 chr9 HAVANA gene 21190654 21191244 591.0 - 0 ENSG00000226597.1 unprocessed_pseudogene IFNWP9 2 OTTHUMG00000019659.1 +59858 chr9 HAVANA gene 21201469 21202205 737.0 - 0 ENSG00000214042.1 protein_coding IFNA7 2 OTTHUMG00000019662.1 +59859 chr9 HAVANA gene 21206181 21207143 963.0 - 0 ENSG00000186803.3 protein_coding IFNA10 2 OTTHUMG00000019658.1 +59860 chr9 HAVANA gene 21209189 21209779 591.0 - 0 ENSG00000223684.1 unprocessed_pseudogene IFNWP18 2 OTTHUMG00000019661.1 +59861 chr9 HAVANA gene 21216373 21217311 939.0 - 0 ENSG00000147885.4 protein_coding IFNA16 2 OTTHUMG00000019663.1 +59862 chr9 HAVANA gene 21227243 21228222 980.0 - 0 ENSG00000234829.4 protein_coding IFNA17 2 OTTHUMG00000019667.1 +59863 chr9 HAVANA gene 21231266 21231853 588.0 - 0 ENSG00000232138.1 unprocessed_pseudogene IFNWP5 2 OTTHUMG00000019666.1 +59864 chr9 HAVANA gene 21239002 21239991 990.0 - 0 ENSG00000228083.2 protein_coding IFNA14 2 OTTHUMG00000019665.1 +59865 chr9 HAVANA gene 21278050 21278619 570.0 - 0 ENSG00000224416.2 unprocessed_pseudogene IFNA22P 2 OTTHUMG00000019668.2 +59866 chr9 HAVANA gene 21304326 21305312 987.0 - 0 ENSG00000147873.5 protein_coding IFNA5 2 OTTHUMG00000019664.1 +59867 chr9 HAVANA gene 21321300 21321827 528.0 + 0 ENSG00000226393.1 unprocessed_pseudogene IFNA20P 2 OTTHUMG00000019670.1 +59868 chr9 HAVANA gene 21329671 21335380 5710.0 - 0 ENSG00000198642.6 protein_coding KLHL9 2 OTTHUMG00000019669.2 retrogene +59869 chr9 HAVANA gene 21349835 21351378 1544.0 - 0 ENSG00000120235.4 protein_coding IFNA6 2 OTTHUMG00000019676.1 +59870 chr9 HAVANA gene 21367424 21368962 1539.0 - 0 ENSG00000233816.3 protein_coding IFNA13 2 OTTHUMG00000019675.2 +59871 chr9 HAVANA gene 21384254 21385388 1135.0 - 0 ENSG00000188379.6 protein_coding IFNA2 2 OTTHUMG00000019674.1 +59872 chr9 HAVANA gene 21394888 21396346 1459.0 - 0 ENSG00000261696.1 lincRNA AL353732.1 2 OTTHUMG00000175506.1 +59873 chr9 HAVANA gene 21398614 21399139 526.0 - 0 ENSG00000231195.1 unprocessed_pseudogene IFNA11P 2 OTTHUMG00000019671.1 +59874 chr9 HAVANA gene 21403081 21403651 571.0 + 0 ENSG00000235108.1 unprocessed_pseudogene IFNA12P 2 OTTHUMG00000019678.1 +59875 chr9 HAVANA gene 21409147 21410185 1039.0 + 0 ENSG00000120242.3 protein_coding IFNA8 2 OTTHUMG00000019677.1 +59876 chr9 HAVANA gene 21420234 21420813 580.0 + 0 ENSG00000237691.1 unprocessed_pseudogene IFNWP2 2 OTTHUMG00000019679.1 +59877 chr9 HAVANA gene 21440454 21441316 863.0 + 0 ENSG00000197919.5 protein_coding IFNA1 2 OTTHUMG00000019673.1 +59878 chr9 HAVANA gene 21455484 21456049 566.0 + 0 ENSG00000238271.2 unprocessed_pseudogene IFNWP19 2 OTTHUMG00000019680.2 +59879 chr9 HAVANA gene 21480839 21482313 1475.0 - 0 ENSG00000184995.7 protein_coding IFNE 2 OTTHUMG00000019672.2 overlapping_locus +59880 chr9 ENSEMBL gene 21512115 21512185 71.0 - 0 ENSG00000199177.1 miRNA MIR31 3 +59881 chr9 ENSEMBL gene 21524307 21524382 76.0 - 0 ENSG00000264379.1 snoRNA RF00157 3 +59882 chr9 HAVANA gene 21455642 21559669 745.0 - 0 ENSG00000171889.3 sense_overlapping MIR31HG 2 OTTHUMG00000019681.1 ncRNA_host,overlapping_locus +59883 chr9 HAVANA gene 21638285 21638676 392.0 + 0 ENSG00000227443.2 processed_pseudogene AL137022.1 1 OTTHUMG00000019682.2 pseudo_consens +59884 chr9 HAVANA gene 21695176 21696943 1768.0 + 0 ENSG00000229835.2 processed_pseudogene KHSRPP1 1 OTTHUMG00000019683.2 pseudo_consens +59885 chr9 ENSEMBL gene 21699314 21699596 283.0 + 0 ENSG00000244230.3 misc_RNA RN7SL151P 3 +59886 chr9 HAVANA gene 21811621 21812347 727.0 - 0 ENSG00000229298.1 processed_pseudogene TUBB8P1 2 OTTHUMG00000019684.1 +59887 chr9 HAVANA gene 21858910 21861926 3017.0 - 0 ENSG00000265194.1 antisense AL359922.2 2 OTTHUMG00000179356.1 +59888 chr9 HAVANA gene 21892188 21893857 1670.0 + 0 ENSG00000279670.1 TEC AL359922.3 2 OTTHUMG00000179357.1 overlapping_locus +59889 chr9 HAVANA gene 21929457 21931073 1617.0 + 0 ENSG00000264801.1 transcribed_processed_pseudogene ERVFRD-3 2 OTTHUMG00000179358.1 overlapping_locus +59890 chr9 HAVANA gene 21802543 21937651 14617.0 + 0 ENSG00000099810.19 protein_coding MTAP 1 OTTHUMG00000019690.9 overlapping_locus +59891 chr9 HAVANA gene 21966929 21967751 823.0 + 0 ENSG00000224854.3 antisense CDKN2A-DT 2 OTTHUMG00000019687.1 overlapping_locus +59892 chr9 HAVANA gene 21967753 21995301 4329.0 - 0 ENSG00000147889.17 protein_coding CDKN2A 1 OTTHUMG00000019686.7 +59893 chr9 HAVANA gene 21995482 21996013 435.0 + 0 ENSG00000266446.1 sense_intronic AL449423.1 2 OTTHUMG00000179348.1 overlapping_locus +59894 chr9 HAVANA gene 22002903 22009363 4058.0 - 0 ENSG00000147883.10 protein_coding CDKN2B 2 OTTHUMG00000019691.2 +59895 chr9 HAVANA gene 22012155 22012536 382.0 + 0 ENSG00000215221.2 processed_pseudogene UBA52P6 1 OTTHUMG00000019688.1 pseudo_consens,overlapping_locus +59896 chr9 HAVANA gene 21802636 22032986 935.0 + 0 ENSG00000264545.1 protein_coding AL359922.1 2 OTTHUMG00000179355.1 overlapping_locus +59897 chr9 ENSEMBL gene 22046758 22046901 144.0 + 0 ENSG00000274055.1 misc_RNA RF02045 3 +59898 chr9 ENSEMBL gene 22117665 22117814 150.0 + 0 ENSG00000277653.1 misc_RNA RF01909 3 +59899 chr9 HAVANA gene 21994778 22121097 4225.0 + 0 ENSG00000240498.7 antisense CDKN2B-AS1 1 OTTHUMG00000019689.4 ncRNA_host,overlapping_locus +59900 chr9 HAVANA gene 22203990 22214672 443.0 - 0 ENSG00000236921.1 lincRNA AL157937.1 2 OTTHUMG00000019692.1 +59901 chr9 HAVANA gene 22446841 22455740 5569.0 + 0 ENSG00000176399.3 protein_coding DMRTA1 2 OTTHUMG00000019693.2 +59902 chr9 HAVANA gene 22747700 22748234 535.0 + 0 ENSG00000236739.3 processed_pseudogene CLIC4P1 1 OTTHUMG00000019694.2 pseudo_consens,overlapping_locus +59903 chr9 HAVANA gene 22767175 22768316 447.0 + 0 ENSG00000224549.1 lincRNA AC017067.1 1 OTTHUMG00000019695.1 overlapping_locus +59904 chr9 HAVANA gene 22646200 22824213 2568.0 + 0 ENSG00000234840.1 lincRNA LINC01239 2 OTTHUMG00000019696.1 overlapping_locus +59905 chr9 HAVANA gene 22703516 23438700 1186.0 - 0 ENSG00000284418.1 lincRNA AL391117.1 2 OTTHUMG00000191913.1 +59906 chr9 HAVANA gene 23632106 23632360 255.0 + 0 ENSG00000227607.2 processed_pseudogene SUMO2P2 1 OTTHUMG00000019697.2 pseudo_consens +59907 chr9 HAVANA gene 23500691 23672387 4805.0 - 0 ENSG00000283982.1 lincRNA AL445623.2 2 OTTHUMG00000191914.1 +59908 chr9 HAVANA gene 23671788 23672399 237.0 - 0 ENSG00000233906.1 lincRNA AL445623.1 2 OTTHUMG00000019699.1 +59909 chr9 HAVANA gene 23681894 23682662 769.0 + 0 ENSG00000226626.2 processed_pseudogene NOP56P2 1 OTTHUMG00000019701.1 pseudo_consens +59910 chr9 HAVANA gene 23690104 23826337 5140.0 - 0 ENSG00000107105.14 protein_coding ELAVL2 1 OTTHUMG00000019700.4 +59911 chr9 HAVANA gene 23829670 23849914 1430.0 + 0 ENSG00000231460.2 lincRNA AL365204.1 2 OTTHUMG00000019702.2 +59912 chr9 HAVANA gene 23894990 23898054 687.0 - 0 ENSG00000237414.2 lincRNA AL365204.2 2 OTTHUMG00000019703.2 +59913 chr9 HAVANA gene 23955760 23956444 685.0 + 0 ENSG00000277608.1 unprocessed_pseudogene AL365204.3 2 OTTHUMG00000187734.1 +59914 chr9 HAVANA gene 24542952 24545946 1287.0 - 0 ENSG00000205442.12 protein_coding IZUMO3 2 OTTHUMG00000019704.5 +59915 chr9 HAVANA gene 24545938 24592104 1254.0 + 0 ENSG00000269957.6 lincRNA AL353811.1 2 OTTHUMG00000183978.3 +59916 chr9 ENSEMBL gene 24905469 24905735 267.0 + 0 ENSG00000223088.1 ribozyme RMRPP5 3 +59917 chr9 ENSEMBL gene 25088811 25089151 341.0 - 0 ENSG00000222693.1 misc_RNA RN7SKP120 3 +59918 chr9 HAVANA gene 25676389 25678440 2052.0 - 0 ENSG00000198680.4 protein_coding TUSC1 2 OTTHUMG00000159591.1 +59919 chr9 HAVANA gene 25780056 25812968 1453.0 + 0 ENSG00000236306.2 lincRNA LINC01241 1 OTTHUMG00000019705.2 +59920 chr9 HAVANA gene 25937912 25938434 523.0 + 0 ENSG00000270683.1 processed_pseudogene FAM71BP1 1 OTTHUMG00000184661.1 pseudo_consens +59921 chr9 HAVANA gene 26066675 26118408 2320.0 + 0 ENSG00000276759.2 lincRNA AL353753.1 2 OTTHUMG00000189251.2 +59922 chr9 HAVANA gene 26642697 26644595 1899.0 - 0 ENSG00000279256.1 TEC AL442639.1 2 OTTHUMG00000175495.1 +59923 chr9 HAVANA gene 26746953 26786874 443.0 + 0 ENSG00000254261.1 lincRNA AL451137.1 2 OTTHUMG00000164347.1 +59924 chr9 ENSEMBL gene 26796173 26796304 132.0 - 0 ENSG00000252580.1 snoRNA RF00322 3 +59925 chr9 HAVANA gene 26801733 26805862 371.0 + 0 ENSG00000253400.1 lincRNA AL356133.2 2 OTTHUMG00000164348.1 +59926 chr9 HAVANA gene 26880178 26880549 372.0 - 0 ENSG00000232466.1 processed_pseudogene AL356133.1 1 OTTHUMG00000019707.1 pseudo_consens,overlapping_locus +59927 chr9 HAVANA gene 26840685 26892804 3014.0 - 0 ENSG00000120159.12 protein_coding CAAP1 2 OTTHUMG00000019706.5 overlapping_locus +59928 chr9 ENSEMBL gene 26895678 26895970 293.0 + 0 ENSG00000240306.2 misc_RNA RN7SL100P 3 +59929 chr9 HAVANA gene 26904083 26947463 4825.0 - 0 ENSG00000137055.14 protein_coding PLAA 1 OTTHUMG00000019708.4 +59930 chr9 HAVANA gene 26955780 26956295 405.0 - 0 ENSG00000234676.1 antisense IFT74-AS1 2 OTTHUMG00000019709.1 +59931 chr9 HAVANA gene 26993136 27005693 3609.0 - 0 ENSG00000184434.7 protein_coding LRRC19 2 OTTHUMG00000019710.2 +59932 chr9 HAVANA gene 26947039 27062930 3755.0 + 0 ENSG00000096872.16 protein_coding IFT74 1 OTTHUMG00000021028.5 +59933 chr9 HAVANA gene 27102630 27104728 564.0 + 0 ENSG00000254396.1 lincRNA AL355432.1 2 OTTHUMG00000164634.1 +59934 chr9 ENSEMBL gene 27198287 27198401 115.0 + 0 ENSG00000223162.1 rRNA_pseudogene RNA5SP280 3 +59935 chr9 HAVANA gene 27210327 27210626 300.0 + 0 ENSG00000232867.1 processed_pseudogene AL355433.1 1 OTTHUMG00000157147.1 pseudo_consens,overlapping_locus +59936 chr9 HAVANA gene 27109141 27230175 4805.0 + 0 ENSG00000120156.20 protein_coding TEK 1 OTTHUMG00000019712.5 overlapping_locus +59937 chr9 HAVANA gene 27245680 27284869 3855.0 - 0 ENSG00000283945.1 transcribed_unprocessed_pseudogene LINC00032 2 OTTHUMG00000019711.2 overlapping_locus +59938 chr9 HAVANA gene 27284659 27297139 1396.0 - 0 ENSG00000120160.10 protein_coding EQTN 2 OTTHUMG00000021033.3 overlapping_locus +59939 chr9 HAVANA gene 27391734 27397563 708.0 + 0 ENSG00000237734.1 antisense AL163192.1 2 OTTHUMG00000019713.1 +59940 chr9 HAVANA gene 27524314 27526498 1140.0 + 0 ENSG00000147896.3 protein_coding IFNK 2 OTTHUMG00000019715.1 +59941 chr9 HAVANA gene 27325209 27529781 7087.0 - 0 ENSG00000120162.9 protein_coding MOB3B 2 OTTHUMG00000019717.3 +59942 chr9 HAVANA gene 27529085 27543902 9804.0 + 0 ENSG00000285103.2 antisense AL451123.1 2 OTTHUMG00000192567.2 +59943 chr9 HAVANA gene 27546545 27573866 6062.0 - 0 ENSG00000147894.15 protein_coding C9orf72 2 OTTHUMG00000019716.2 +59944 chr9 HAVANA gene 27608382 27610745 2364.0 - 0 ENSG00000215441.3 processed_pseudogene CTAGE12P 1 OTTHUMG00000019718.2 pseudo_consens +59945 chr9 HAVANA gene 27829276 27844481 2084.0 + 0 ENSG00000260390.1 lincRNA AL360014.1 2 OTTHUMG00000175783.1 +59946 chr9 HAVANA gene 27937617 27944497 6881.0 - 0 ENSG00000260412.1 sense_overlapping AL353746.1 2 OTTHUMG00000175585.1 +59947 chr9 HAVANA gene 28148211 28149236 1026.0 + 0 ENSG00000229060.4 processed_pseudogene AL451124.1 2 OTTHUMG00000019719.2 +59948 chr9 HAVANA gene 28598668 28599292 625.0 - 0 ENSG00000224955.1 processed_pseudogene KCTD10P1 1 OTTHUMG00000019720.1 pseudo_consens,overlapping_locus +59949 chr9 HAVANA gene 27948078 28670286 3480.0 - 0 ENSG00000174482.10 protein_coding LINGO2 2 OTTHUMG00000019721.2 overlapping_locus +59950 chr9 ENSEMBL gene 28863626 28863706 81.0 - 0 ENSG00000215966.1 miRNA MIR876 3 +59951 chr9 ENSEMBL gene 28888879 28888955 77.0 - 0 ENSG00000215939.3 miRNA MIR873 3 +59952 chr9 HAVANA gene 29254075 29254426 352.0 - 0 ENSG00000230276.2 processed_pseudogene AL162388.1 2 OTTHUMG00000019722.2 +59953 chr9 HAVANA gene 29317833 29318952 1120.0 + 0 ENSG00000277646.1 processed_pseudogene AL353684.1 1 OTTHUMG00000187736.1 pseudo_consens +59954 chr9 HAVANA gene 29636486 29636853 368.0 + 0 ENSG00000229834.1 processed_pseudogene AL354676.1 1 OTTHUMG00000019723.1 pseudo_consens +59955 chr9 HAVANA gene 29824742 29826711 1970.0 - 0 ENSG00000230097.2 processed_pseudogene ME2P1 1 OTTHUMG00000019724.2 pseudo_consens +59956 chr9 HAVANA gene 30558880 30559481 602.0 - 0 ENSG00000232060.3 processed_pseudogene SLC4A1APP1 1 OTTHUMG00000019728.2 pseudo_consens +59957 chr9 HAVANA gene 30388935 30575012 1966.0 - 0 ENSG00000280683.1 lincRNA LINC01242 2 OTTHUMG00000189587.2 +59958 chr9 HAVANA gene 30670964 30671966 555.0 - 0 ENSG00000239792.2 unprocessed_pseudogene C2orf27AP2 2 OTTHUMG00000019725.2 +59959 chr9 HAVANA gene 30689105 30690272 1168.0 + 0 ENSG00000215210.3 processed_pseudogene RBMXP2 1 OTTHUMG00000019727.1 pseudo_consens +59960 chr9 HAVANA gene 30773464 30774732 1269.0 + 0 ENSG00000235626.2 processed_pseudogene KRT18P66 1 OTTHUMG00000019729.1 pseudo_consens +59961 chr9 HAVANA gene 30799471 30800746 1276.0 - 0 ENSG00000226246.1 processed_pseudogene KRT18P36 1 OTTHUMG00000019730.1 pseudo_consens +59962 chr9 HAVANA gene 30831878 30832225 348.0 - 0 ENSG00000233278.1 processed_pseudogene RPS26P2 2 OTTHUMG00000019731.3 +59963 chr9 HAVANA gene 30935485 30935977 493.0 + 0 ENSG00000214020.3 processed_pseudogene FTLP4 1 OTTHUMG00000019732.1 pseudo_consens +59964 chr9 HAVANA gene 30988085 30990572 1382.0 + 0 ENSG00000228557.1 processed_pseudogene HSPA8P17 1 OTTHUMG00000019733.1 pseudo_consens +59965 chr9 HAVANA gene 31165618 31166980 1363.0 - 0 ENSG00000223421.1 processed_pseudogene AL354854.1 2 OTTHUMG00000019734.1 +59966 chr9 HAVANA gene 31253901 31254777 877.0 + 0 ENSG00000232203.3 processed_pseudogene SLC25A6P2 1 OTTHUMG00000019735.1 pseudo_consens +59967 chr9 HAVANA gene 31371611 31381490 721.0 - 0 ENSG00000260720.1 lincRNA LINC01243 2 OTTHUMG00000175494.1 +59968 chr9 HAVANA gene 31505280 31505943 664.0 + 0 ENSG00000226998.1 unprocessed_pseudogene MTATP6P30 2 OTTHUMG00000019736.1 +59969 chr9 HAVANA gene 31505946 31506615 670.0 + 0 ENSG00000229080.1 unprocessed_pseudogene MTCO3P30 2 OTTHUMG00000019737.1 +59970 chr9 HAVANA gene 31644576 31645160 585.0 - 0 ENSG00000235148.2 processed_pseudogene HMGB3P23 1 OTTHUMG00000019738.2 pseudo_consens +59971 chr9 ENSEMBL gene 32293558 32293692 135.0 + 0 ENSG00000252313.1 rRNA_pseudogene RNA5SP281 3 +59972 chr9 HAVANA gene 32333457 32334354 898.0 - 0 ENSG00000225347.1 processed_pseudogene SLC25A5P8 1 OTTHUMG00000019739.1 pseudo_consens +59973 chr9 HAVANA gene 32384603 32454769 7555.0 + 0 ENSG00000122729.18 protein_coding ACO1 2 OTTHUMG00000019740.3 +59974 chr9 HAVANA gene 32455705 32526324 4353.0 - 0 ENSG00000107201.9 protein_coding DDX58 2 OTTHUMG00000019746.2 +59975 chr9 HAVANA gene 32540544 32552553 4098.0 - 0 ENSG00000197579.7 protein_coding TOPORS 2 OTTHUMG00000019743.1 +59976 chr9 HAVANA gene 32566148 32567126 979.0 - 0 ENSG00000232303.2 processed_pseudogene DFFBP1 1 OTTHUMG00000019745.2 pseudo_consens,overlapping_locus +59977 chr9 HAVANA gene 32551144 32568621 3827.0 + 0 ENSG00000235453.10 protein_coding SMIM27 2 OTTHUMG00000019742.8 overlapping_locus +59978 chr9 HAVANA gene 32552999 32573184 1388.0 - 0 ENSG00000165264.10 protein_coding NDUFB6 2 OTTHUMG00000019741.1 overlapping_locus +59979 chr9 HAVANA gene 32629454 32635669 6216.0 - 0 ENSG00000122728.6 protein_coding TAF1L 2 OTTHUMG00000019747.2 retrogene +59980 chr9 HAVANA gene 32643103 32645026 839.0 - 0 ENSG00000230516.1 lincRNA AL589642.2 1 OTTHUMG00000019749.1 +59981 chr9 HAVANA gene 32633454 32648685 2582.0 + 0 ENSG00000223440.1 antisense AL589642.1 2 OTTHUMG00000019750.1 +59982 chr9 HAVANA gene 32676063 32676520 458.0 - 0 ENSG00000238001.2 processed_pseudogene SNRPCP1 1 OTTHUMG00000019748.2 pseudo_consens +59983 chr9 HAVANA gene 32727069 32727522 454.0 - 0 ENSG00000230867.1 processed_pseudogene AL157884.1 1 OTTHUMG00000019751.1 pseudo_consens +59984 chr9 HAVANA gene 32783499 32787399 3581.0 + 0 ENSG00000188133.5 protein_coding TMEM215 2 OTTHUMG00000129521.1 +59985 chr9 ENSEMBL gene 32820261 32820350 90.0 + 0 ENSG00000272113.2 misc_RNA RF00019 3 +59986 chr9 HAVANA gene 32840598 32841762 551.0 - 0 ENSG00000231193.1 lincRNA AL157884.2 1 OTTHUMG00000019752.1 overlapping_locus +59987 chr9 HAVANA gene 32836575 32869595 1184.0 - 0 ENSG00000236796.1 unprocessed_pseudogene AL157884.3 2 OTTHUMG00000019753.1 overlapping_locus +59988 chr9 HAVANA gene 32926051 32926450 400.0 + 0 ENSG00000223807.1 processed_pseudogene BOLA3P4 1 OTTHUMG00000019755.1 pseudo_consens +59989 chr9 HAVANA gene 32945996 32947222 1227.0 + 0 ENSG00000237437.1 processed_pseudogene ASS1P12 1 OTTHUMG00000019754.1 pseudo_consens +59990 chr9 HAVANA gene 32979560 32980403 844.0 - 0 ENSG00000236184.1 processed_pseudogene TCEA1P4 1 OTTHUMG00000019756.1 pseudo_consens,overlapping_locus +59991 chr9 HAVANA gene 33019682 33020165 484.0 - 0 ENSG00000225693.1 processed_pseudogene LAGE3P1 1 OTTHUMG00000019761.1 pseudo_consens,overlapping_locus +59992 chr9 HAVANA gene 32972606 33025168 3789.0 - 0 ENSG00000137074.18 protein_coding APTX 1 OTTHUMG00000019759.6 overlapping_locus +59993 chr9 HAVANA gene 33025211 33039907 2730.0 + 0 ENSG00000086061.15 protein_coding DNAJA1 2 OTTHUMG00000019760.1 +59994 chr9 HAVANA gene 33041764 33076659 7122.0 - 0 ENSG00000122692.8 protein_coding SMU1 2 OTTHUMG00000019757.1 +59995 chr9 HAVANA gene 33104082 33167356 4901.0 - 0 ENSG00000086062.12 protein_coding B4GALT1 2 OTTHUMG00000019764.1 +59996 chr9 ENSEMBL gene 33174170 33174295 126.0 + 0 ENSG00000252224.1 snRNA RNU4ATAC15P 3 +59997 chr9 HAVANA gene 33166975 33179983 843.0 + 0 ENSG00000233554.5 antisense B4GALT1-AS1 2 OTTHUMG00000019763.1 ncRNA_host +59998 chr9 HAVANA gene 33218365 33248567 654.0 + 0 ENSG00000122711.8 protein_coding SPINK4 2 OTTHUMG00000019762.1 +59999 chr9 HAVANA gene 33247820 33264720 7073.0 - 0 ENSG00000107262.21 protein_coding BAG1 1 OTTHUMG00000019766.6 +60000 chr9 HAVANA gene 33264879 33282069 2390.0 + 0 ENSG00000086065.13 protein_coding CHMP5 2 OTTHUMG00000019765.3 +60001 chr9 ENSEMBL gene 33352788 33352874 87.0 - 0 ENSG00000200544.1 misc_RNA RF00019 3 +60002 chr9 HAVANA gene 33290511 33371157 7147.0 + 0 ENSG00000086102.18 protein_coding NFX1 2 OTTHUMG00000019772.5 +60003 chr9 HAVANA gene 33383179 33402682 5253.0 - 0 ENSG00000165269.12 protein_coding AQP7 2 OTTHUMG00000019773.5 +60004 chr9 HAVANA gene 33402857 33409948 353.0 + 0 ENSG00000223678.1 antisense AL356218.1 2 OTTHUMG00000000392.1 +60005 chr9 HAVANA gene 33441154 33447633 2950.0 - 0 ENSG00000165272.15 protein_coding AQP3 2 OTTHUMG00000019769.4 +60006 chr9 HAVANA gene 33449755 33449941 187.0 + 0 ENSG00000270542.1 processed_pseudogene AL356218.2 1 OTTHUMG00000184681.2 pseudo_consens +60007 chr9 ENSEMBL gene 33467869 33467935 67.0 - 0 ENSG00000275651.1 miRNA MIR6851 3 +60008 chr9 HAVANA gene 33461441 33473930 5906.0 - 0 ENSG00000165271.16 protein_coding NOL6 2 OTTHUMG00000000394.4 ncRNA_host +60009 chr9 HAVANA gene 33503655 33510711 476.0 - 0 ENSG00000226823.1 unprocessed_pseudogene SUGT1P1 2 OTTHUMG00000019782.2 +60010 chr9 HAVANA gene 33512959 33514773 395.0 - 0 ENSG00000228072.1 antisense AL139008.2 2 OTTHUMG00000000399.1 +60011 chr9 HAVANA gene 33524394 33573009 5857.0 + 0 ENSG00000230453.9 protein_coding ANKRD18B 2 OTTHUMG00000019776.7 +60012 chr9 HAVANA gene 33574361 33574588 228.0 - 0 ENSG00000225123.2 processed_pseudogene AL139008.1 2 OTTHUMG00000000403.2 +60013 chr9 HAVANA gene 33576380 33577014 635.0 + 0 ENSG00000234373.1 processed_pseudogene SNX18P7 2 OTTHUMG00000000409.1 +60014 chr9 HAVANA gene 33580695 33605293 1137.0 + 0 ENSG00000226562.3 lincRNA CYP4F26P 2 OTTHUMG00000000405.3 +60015 chr9 HAVANA gene 33613848 33614009 162.0 - 0 ENSG00000204982.3 unprocessed_pseudogene PRSS3P4 1 OTTHUMG00000000408.1 pseudo_consens +60016 chr9 HAVANA gene 33617762 33618506 416.0 + 0 ENSG00000205274.3 TR_V_gene TRBV20OR9-2 2 OTTHUMG00000019781.3 +60017 chr9 HAVANA gene 33624274 33625293 1020.0 + 0 ENSG00000231991.4 processed_pseudogene ANXA2P2 2 OTTHUMG00000019778.4 +60018 chr9 HAVANA gene 33629121 33629586 367.0 + 0 ENSG00000183938.5 TR_V_pseudogene TRBV21OR9-2 2 OTTHUMG00000019783.3 +60019 chr9 HAVANA gene 33634111 33634246 136.0 + 0 ENSG00000234122.1 TR_V_pseudogene TRBV22OR9-2 2 OTTHUMG00000000400.2 +60020 chr9 HAVANA gene 33638035 33638494 335.0 + 0 ENSG00000229063.2 TR_V_pseudogene TRBV23OR9-2 2 OTTHUMG00000019774.3 +60021 chr9 HAVANA gene 33649047 33649614 435.0 + 0 ENSG00000215206.5 TR_V_pseudogene TRBV24OR9-2 1 OTTHUMG00000152869.1 pseudo_consens +60022 chr9 HAVANA gene 33662166 33662663 374.0 + 0 ENSG00000240215.4 TR_V_pseudogene TRBV25OR9-2 2 OTTHUMG00000019791.3 +60023 chr9 HAVANA gene 33673504 33677499 3996.0 - 0 ENSG00000237984.3 transcribed_processed_pseudogene PTENP1 1 OTTHUMG00000000410.2 pseudo_consens +60024 chr9 HAVANA gene 33677268 33688011 873.0 + 0 ENSG00000281128.1 antisense PTENP1-AS 2 OTTHUMG00000189560.1 +60025 chr9 HAVANA gene 33695767 33696059 293.0 + 0 ENSG00000231165.3 TR_V_pseudogene TRBV26OR9-2 1 OTTHUMG00000000411.2 pseudo_consens +60026 chr9 HAVANA gene 33697459 33700986 3528.0 + 0 ENSG00000260947.1 lincRNA AL356489.2 2 OTTHUMG00000175677.1 +60027 chr9 HAVANA gene 33719690 33722555 1144.0 + 0 ENSG00000227301.1 lincRNA AL356489.1 2 OTTHUMG00000000412.1 +60028 chr9 HAVANA gene 33732975 33738416 486.0 - 0 ENSG00000233776.5 antisense LINC01251 2 OTTHUMG00000000413.1 +60029 chr9 HAVANA gene 33786221 33786828 333.0 + 0 ENSG00000223394.2 TR_V_pseudogene TRBV29OR9-2 2 OTTHUMG00000000415.2 overlapping_locus +60030 chr9 HAVANA gene 33750466 33799231 1664.0 + 0 ENSG00000010438.16 protein_coding PRSS3 2 OTTHUMG00000019798.5 overlapping_locus +60031 chr9 HAVANA gene 33785950 33818795 647.0 - 0 ENSG00000235481.2 antisense UBE2R2-AS1 2 OTTHUMG00000000421.2 +60032 chr9 ENSEMBL gene 33830978 33831078 101.0 + 0 ENSG00000200834.1 misc_RNA RF00019 3 +60033 chr9 ENSEMBL gene 33868540 33868665 126.0 + 0 ENSG00000251748.1 snRNA RNU4ATAC11P 3 +60034 chr9 HAVANA gene 33817567 33920404 4075.0 + 0 ENSG00000107341.4 protein_coding UBE2R2 2 OTTHUMG00000019797.1 ncRNA_host +60035 chr9 ENSEMBL gene 33934296 33934376 81.0 - 0 ENSG00000238300.1 snoRNA SNORD121B 3 +60036 chr9 ENSEMBL gene 33952769 33952850 82.0 - 0 ENSG00000238886.1 snoRNA SNORD121A 3 +60037 chr9 HAVANA gene 33968071 33968518 448.0 - 0 ENSG00000226801.2 processed_pseudogene OSTCP8 1 OTTHUMG00000000416.2 pseudo_consens,overlapping_locus +60038 chr9 HAVANA gene 33921693 34048949 10620.0 - 0 ENSG00000137073.21 protein_coding UBAP2 2 OTTHUMG00000000427.12 ncRNA_host,overlapping_locus +60039 chr9 ENSEMBL gene 34049966 34050244 279.0 + 0 ENSG00000222259.1 misc_RNA RN7SKP114 3 +60040 chr9 HAVANA gene 34084332 34096225 635.0 + 0 ENSG00000228352.2 antisense AL354989.1 2 OTTHUMG00000000424.1 +60041 chr9 HAVANA gene 34109171 34109968 798.0 - 0 ENSG00000224802.2 processed_pseudogene TUBB4BP2 2 OTTHUMG00000000426.2 overlapping_locus +60042 chr9 HAVANA gene 34086387 34127399 4390.0 - 0 ENSG00000198876.12 protein_coding DCAF12 2 OTTHUMG00000019806.4 overlapping_locus +60043 chr9 HAVANA gene 34133157 34134696 1540.0 - 0 ENSG00000239392.2 processed_pseudogene AL354989.2 1 OTTHUMG00000000425.2 pseudo_consens +60044 chr9 HAVANA gene 34191555 34191881 327.0 + 0 ENSG00000227383.1 processed_pseudogene AL353662.1 1 OTTHUMG00000019811.2 pseudo_consens,overlapping_locus +60045 chr9 ENSEMBL gene 34201273 34201515 237.0 - 0 ENSG00000279336.1 pseudogene AL353662.3 3 +60046 chr9 ENSEMBL gene 34206134 34206241 108.0 - 0 ENSG00000252164.1 rRNA_pseudogene RNA5SP282 3 +60047 chr9 HAVANA gene 34223984 34224628 645.0 - 0 ENSG00000233668.1 processed_pseudogene AL353662.2 1 OTTHUMG00000019812.1 pseudo_consens +60048 chr9 HAVANA gene 34179005 34252523 2772.0 + 0 ENSG00000165006.13 protein_coding UBAP1 2 OTTHUMG00000000430.3 overlapping_locus +60049 chr9 ENSEMBL gene 34282528 34282670 143.0 - 0 ENSG00000222426.1 snRNA RNU2-50P 3 +60050 chr9 HAVANA gene 34252381 34311371 6131.0 - 0 ENSG00000186638.16 protein_coding KIF24 2 OTTHUMG00000019810.6 ncRNA_host +60051 chr9 HAVANA gene 34318407 34319655 1249.0 + 0 ENSG00000229207.1 processed_pseudogene SERPINH1P1 1 OTTHUMG00000000429.2 pseudo_consens +60052 chr9 HAVANA gene 34329506 34343713 1075.0 + 0 ENSG00000164978.17 protein_coding NUDT2 2 OTTHUMG00000019817.3 +60053 chr9 HAVANA gene 34366670 34376853 6398.0 - 0 ENSG00000164976.8 protein_coding MYORG 2 OTTHUMG00000019816.5 +60054 chr9 ENSEMBL gene 34389943 34390051 109.0 - 0 ENSG00000207032.1 misc_RNA RF00019 3 +60055 chr9 HAVANA gene 34379019 34397832 1439.0 - 0 ENSG00000164972.12 protein_coding C9orf24 2 OTTHUMG00000000437.4 ncRNA_host +60056 chr9 HAVANA gene 34398184 34458570 3782.0 - 0 ENSG00000164970.14 protein_coding FAM219A 2 OTTHUMG00000019822.3 +60057 chr9 ENSEMBL gene 34478622 34478905 284.0 + 0 ENSG00000251697.1 misc_RNA RN7SKP24 3 +60058 chr9 HAVANA gene 34457414 34520989 3615.0 + 0 ENSG00000122735.15 protein_coding DNAI1 2 OTTHUMG00000019825.9 ncRNA_host +60059 chr9 HAVANA gene 34521040 34523041 1082.0 - 0 ENSG00000168913.6 protein_coding ENHO 2 OTTHUMG00000159589.1 +60060 chr9 HAVANA gene 34521527 34524241 631.0 + 0 ENSG00000230729.1 antisense AL160270.1 1 OTTHUMG00000000438.1 +60061 chr9 HAVANA gene 34546524 34546996 473.0 - 0 ENSG00000232983.2 processed_pseudogene AL160270.2 2 OTTHUMG00000000444.2 +60062 chr9 HAVANA gene 34568015 34582829 1182.0 + 0 ENSG00000237159.5 antisense CNTFR-AS1 2 OTTHUMG00000000441.1 +60063 chr9 HAVANA gene 34551432 34590140 2111.0 - 0 ENSG00000122756.14 protein_coding CNTFR 2 OTTHUMG00000019821.5 +60064 chr9 HAVANA gene 34610486 34612104 1092.0 - 0 ENSG00000164967.9 protein_coding RPP25L 2 OTTHUMG00000000443.1 +60065 chr9 HAVANA gene 34613545 34620523 3740.0 - 0 ENSG00000137100.15 protein_coding DCTN3 2 OTTHUMG00000019830.6 +60066 chr9 HAVANA gene 34621379 34628107 1411.0 - 0 ENSG00000205143.2 protein_coding ARID3C 2 OTTHUMG00000000445.2 +60067 chr9 HAVANA gene 34634722 34637809 2196.0 - 0 ENSG00000147955.16 protein_coding SIGMAR1 2 OTTHUMG00000019829.4 +60068 chr9 HAVANA gene 34638133 34651035 4407.0 + 0 ENSG00000213930.11 protein_coding GALT 2 OTTHUMG00000019836.7 overlapping_locus +60069 chr9 HAVANA gene 34646645 34657113 902.0 + 0 ENSG00000258728.1 protein_coding AL162231.3 1 OTTHUMG00000170834.3 overlapping_locus +60070 chr9 HAVANA gene 34650702 34661892 4271.0 + 0 ENSG00000137070.17 protein_coding IL11RA 1 OTTHUMG00000019837.7 overlapping_locus +60071 chr9 HAVANA gene 34661880 34664048 1008.0 - 0 ENSG00000213927.3 protein_coding CCL27 2 OTTHUMG00000019834.2 overlapping_locus +60072 chr9 HAVANA gene 34661903 34666029 3264.0 - 0 ENSG00000261215.1 processed_transcript AL162231.4 2 OTTHUMG00000170835.1 overlapping_locus +60073 chr9 HAVANA gene 34664163 34666112 1833.0 - 0 ENSG00000187186.14 protein_coding AL162231.1 2 OTTHUMG00000000449.3 overlapping_locus +60074 chr9 HAVANA gene 34665665 34681298 665.0 + 0 ENSG00000230074.1 antisense AL162231.2 2 OTTHUMG00000000451.1 +60075 chr9 HAVANA gene 34689567 34691277 777.0 - 0 ENSG00000172724.11 protein_coding CCL19 2 OTTHUMG00000019833.1 +60076 chr9 HAVANA gene 34709005 34710124 924.0 - 0 ENSG00000137077.7 protein_coding CCL21 2 OTTHUMG00000019838.1 +60077 chr9 HAVANA gene 34723055 34729467 4225.0 - 0 ENSG00000205108.5 protein_coding FAM205A 2 OTTHUMG00000000448.2 +60078 chr9 HAVANA gene 34832295 34838586 4314.0 - 0 ENSG00000257198.6 transcribed_unprocessed_pseudogene FAM205BP 2 OTTHUMG00000019839.5 +60079 chr9 HAVANA gene 34889064 34895778 1373.0 - 0 ENSG00000187791.12 protein_coding FAM205C 1 OTTHUMG00000019841.5 +60080 chr9 HAVANA gene 34917175 34918296 1122.0 + 0 ENSG00000178723.7 processed_pseudogene GLULP4 1 OTTHUMG00000019842.2 pseudo_consens +60081 chr9 HAVANA gene 34922184 34922921 738.0 - 0 ENSG00000215199.3 processed_pseudogene YWHAZP6 1 OTTHUMG00000019843.2 pseudo_consens +60082 chr9 HAVANA gene 34957608 34982544 5813.0 + 0 ENSG00000122733.12 protein_coding PHF24 2 OTTHUMG00000019844.5 +60083 chr9 HAVANA gene 34985410 34989379 749.0 - 0 ENSG00000281491.1 lincRNA DNAJB5-DT 2 OTTHUMG00000189564.1 +60084 chr9 HAVANA gene 34989641 34998900 5891.0 + 0 ENSG00000137094.14 protein_coding DNAJB5 1 OTTHUMG00000019840.8 +60085 chr9 HAVANA gene 35001342 35002994 1653.0 - 0 ENSG00000273597.1 processed_pseudogene AL355377.1 2 OTTHUMG00000187737.1 +60086 chr9 HAVANA gene 35001913 35003663 1751.0 + 0 ENSG00000279489.1 TEC AL355377.2 2 OTTHUMG00000175586.1 +60087 chr9 HAVANA gene 35010703 35011285 583.0 + 0 ENSG00000233148.2 processed_pseudogene SYF2P2 1 OTTHUMG00000019845.2 pseudo_consens +60088 chr9 HAVANA gene 35038625 35044326 5702.0 - 0 ENSG00000279608.1 TEC AL353795.3 2 OTTHUMG00000187201.1 +60089 chr9 HAVANA gene 35041095 35045991 3835.0 + 0 ENSG00000174038.12 protein_coding C9orf131 1 OTTHUMG00000019853.7 +60090 chr9 ENSEMBL gene 35049271 35049563 293.0 + 0 ENSG00000241568.3 misc_RNA RN7SL338P 3 +60091 chr9 HAVANA gene 35056064 35073249 5438.0 - 0 ENSG00000165280.15 protein_coding VCP 1 OTTHUMG00000019855.4 +60092 chr9 HAVANA gene 35073835 35080016 3614.0 - 0 ENSG00000221829.9 protein_coding FANCG 2 OTTHUMG00000019850.4 +60093 chr9 HAVANA gene 35088688 35096601 7209.0 - 0 ENSG00000165282.13 protein_coding PIGO 2 OTTHUMG00000019854.3 +60094 chr9 HAVANA gene 35096378 35098141 425.0 + 0 ENSG00000234181.1 antisense AL353795.2 2 OTTHUMG00000019849.1 +60095 chr9 HAVANA gene 35099776 35103195 1806.0 - 0 ENSG00000165283.15 protein_coding STOML2 2 OTTHUMG00000019851.3 +60096 chr9 HAVANA gene 35104112 35116341 6409.0 - 0 ENSG00000005238.19 protein_coding FAM214B 2 OTTHUMG00000019847.6 +60097 chr9 HAVANA gene 35147410 35149184 1775.0 - 0 ENSG00000215198.3 processed_pseudogene AL353795.1 2 OTTHUMG00000019848.1 +60098 chr9 HAVANA gene 35360540 35362054 1515.0 - 0 ENSG00000279083.1 TEC AL160274.1 2 OTTHUMG00000187202.1 +60099 chr9 HAVANA gene 35161992 35405338 17916.0 + 0 ENSG00000198722.14 protein_coding UNC13B 2 OTTHUMG00000019856.7 +60100 chr9 HAVANA gene 35449748 35450352 605.0 + 0 ENSG00000244213.1 processed_pseudogene ZFAND6P1 1 OTTHUMG00000019859.1 pseudo_consens,overlapping_locus +60101 chr9 HAVANA gene 35406755 35483035 6291.0 + 0 ENSG00000179766.19 transcribed_unprocessed_pseudogene ATP8B5P 1 OTTHUMG00000019862.7 pseudo_consens,overlapping_locus +60102 chr9 HAVANA gene 35507564 35507873 310.0 + 0 ENSG00000235619.1 processed_pseudogene RPL36AP33 1 OTTHUMG00000019860.1 pseudo_consens,overlapping_locus +60103 chr9 HAVANA gene 35490127 35561898 5682.0 + 0 ENSG00000198853.11 protein_coding RUSC2 2 OTTHUMG00000019861.1 overlapping_locus +60104 chr9 HAVANA gene 35561831 35563899 1372.0 - 0 ENSG00000215187.10 protein_coding FAM166B 2 OTTHUMG00000019858.3 +60105 chr9 HAVANA gene 35592786 35592951 166.0 + 0 ENSG00000227852.1 processed_pseudogene RPS29P17 1 OTTHUMG00000019864.1 pseudo_consens +60106 chr9 ENSEMBL gene 35608094 35608159 66.0 + 0 ENSG00000263892.3 miRNA MIR4667 3 +60107 chr9 HAVANA gene 35605305 35610041 3298.0 + 0 ENSG00000107140.15 protein_coding TESK1 2 OTTHUMG00000019863.1 ncRNA_host +60108 chr9 HAVANA gene 35642514 35643517 679.0 + 0 ENSG00000231393.1 antisense AL357874.2 2 OTTHUMG00000019865.1 +60109 chr9 HAVANA gene 35609533 35646810 3386.0 - 0 ENSG00000137101.12 protein_coding CD72 2 OTTHUMG00000019870.1 +60110 chr9 HAVANA gene 35646270 35647099 574.0 + 0 ENSG00000227933.1 antisense AL357874.1 1 OTTHUMG00000019866.1 +60111 chr9 HAVANA gene 35649295 35650950 1327.0 - 0 ENSG00000137078.8 protein_coding SIT1 2 OTTHUMG00000019867.1 +60112 chr9 ENSEMBL gene 35657754 35658017 264.0 - 0 ENSG00000277027.1 ribozyme RMRP 3 +60113 chr9 HAVANA gene 35657751 35658018 268.0 - 0 ENSG00000269900.3 lincRNA RMRP 2 OTTHUMG00000184014.1 ncRNA_host +60114 chr9 HAVANA gene 35658290 35661511 1459.0 + 0 ENSG00000159884.11 protein_coding CCDC107 2 OTTHUMG00000019868.1 +60115 chr9 ENSEMBL gene 35671776 35672044 269.0 + 0 ENSG00000243136.3 misc_RNA RN7SL22P 3 +60116 chr9 HAVANA gene 35658875 35675866 6496.0 - 0 ENSG00000137135.17 protein_coding ARHGEF39 2 OTTHUMG00000019869.5 +60117 chr9 HAVANA gene 35673856 35681159 1670.0 + 0 ENSG00000107159.12 protein_coding CA9 2 OTTHUMG00000021029.1 +60118 chr9 HAVANA gene 35681992 35690121 3248.0 - 0 ENSG00000198467.14 protein_coding TPM2 2 OTTHUMG00000019878.9 +60119 chr9 ENSEMBL gene 35710676 35710741 66.0 - 0 ENSG00000284195.1 miRNA MIR6852 3 +60120 chr9 HAVANA gene 35696948 35732395 10076.0 - 0 ENSG00000137076.20 protein_coding TLN1 2 OTTHUMG00000019874.4 ncRNA_host +60121 chr9 ENSEMBL gene 35732922 35732995 74.0 + 0 ENSG00000273945.1 miRNA MIR6853 3 +60122 chr9 HAVANA gene 35732335 35737004 1903.0 + 0 ENSG00000107175.11 protein_coding CREB3 2 OTTHUMG00000019872.1 ncRNA_host +60123 chr9 HAVANA gene 35736866 35749228 4803.0 - 0 ENSG00000070610.14 protein_coding GBA2 2 OTTHUMG00000021024.1 +60124 chr9 HAVANA gene 35752990 35756613 787.0 - 0 ENSG00000215183.4 protein_coding MSMP 1 OTTHUMG00000019882.2 +60125 chr9 HAVANA gene 35756712 35757940 696.0 - 0 ENSG00000228843.2 antisense AL133410.2 1 OTTHUMG00000019883.2 +60126 chr9 HAVANA gene 35749287 35758575 7116.0 + 0 ENSG00000107185.9 protein_coding RGP1 2 OTTHUMG00000019873.2 +60127 chr9 HAVANA gene 35772163 35790432 952.0 + 0 ENSG00000227388.2 lincRNA AL133410.1 1 OTTHUMG00000019884.2 +60128 chr9 HAVANA gene 35792154 35809732 3865.0 + 0 ENSG00000159899.14 protein_coding NPR2 1 OTTHUMG00000019871.4 +60129 chr9 HAVANA gene 35808045 35812272 2722.0 - 0 ENSG00000137098.13 protein_coding SPAG8 2 OTTHUMG00000019875.3 +60130 chr9 HAVANA gene 35812960 35815354 2395.0 - 0 ENSG00000137133.10 protein_coding HINT2 2 OTTHUMG00000019886.3 overlapping_locus +60131 chr9 HAVANA gene 35812960 35828732 1810.0 - 0 ENSG00000285645.1 protein_coding AL133410.3 2 OTTHUMG00000193416.1 overlapping_locus +60132 chr9 HAVANA gene 35816391 35828747 3941.0 - 0 ENSG00000204930.9 protein_coding FAM221B 2 OTTHUMG00000019880.3 overlapping_locus +60133 chr9 HAVANA gene 35859055 35859980 926.0 - 0 ENSG00000236083.2 unitary_pseudogene OR13E1P 2 OTTHUMG00000019877.2 +60134 chr9 HAVANA gene 35814451 35865518 16165.0 + 0 ENSG00000137103.19 protein_coding TMEM8B 2 OTTHUMG00000019885.8 +60135 chr9 HAVANA gene 35869263 35870601 1339.0 - 0 ENSG00000168828.5 protein_coding OR13J1 2 OTTHUMG00000019879.1 +60136 chr9 HAVANA gene 35874810 35875194 385.0 - 0 ENSG00000233659.1 processed_pseudogene NDUFA5P4 1 OTTHUMG00000019881.2 pseudo_consens +60137 chr9 HAVANA gene 35906192 35907141 950.0 + 0 ENSG00000196196.2 protein_coding HRCT1 2 OTTHUMG00000154146.1 +60138 chr9 HAVANA gene 35909483 35937153 2357.0 + 0 ENSG00000235387.3 protein_coding SPAAR 2 OTTHUMG00000019887.3 +60139 chr9 HAVANA gene 35943210 35943934 725.0 - 0 ENSG00000225639.1 processed_pseudogene PGAM1P2 1 OTTHUMG00000019889.1 pseudo_consens +60140 chr9 HAVANA gene 35957108 35958154 1047.0 - 0 ENSG00000278889.4 protein_coding OR2S2 2 OTTHUMG00000019891.2 +60141 chr9 HAVANA gene 35971344 35972318 975.0 - 0 ENSG00000213866.3 processed_pseudogene YBX1P10 1 OTTHUMG00000019890.1 pseudo_consens +60142 chr9 HAVANA gene 35991336 35992285 950.0 - 0 ENSG00000179443.5 unprocessed_pseudogene OR13C6P 2 OTTHUMG00000019892.1 +60143 chr9 HAVANA gene 36002909 36003867 959.0 - 0 ENSG00000243641.3 polymorphic_pseudogene OR13C7 2 OTTHUMG00000019893.3 +60144 chr9 HAVANA gene 35962195 36014623 1859.0 + 0 ENSG00000228307.2 transcribed_unprocessed_pseudogene OR2S1P 2 OTTHUMG00000019894.2 +60145 chr9 HAVANA gene 36021692 36022113 422.0 + 0 ENSG00000236110.1 unprocessed_pseudogene OR2AM1P 2 OTTHUMG00000019895.1 +60146 chr9 ENSEMBL gene 36072686 36072762 77.0 + 0 ENSG00000276730.1 misc_RNA RF02275 3 +60147 chr9 HAVANA gene 36036433 36124451 6045.0 + 0 ENSG00000122707.11 protein_coding RECK 2 OTTHUMG00000019898.1 ncRNA_host +60148 chr9 HAVANA gene 36136536 36163913 3055.0 + 0 ENSG00000122694.15 protein_coding GLIPR2 2 OTTHUMG00000019900.2 +60149 chr9 HAVANA gene 36169394 36171334 1941.0 + 0 ENSG00000185972.5 protein_coding CCIN 2 OTTHUMG00000019901.1 +60150 chr9 ENSEMBL gene 36267783 36267922 140.0 + 0 ENSG00000222760.1 snRNA RNU4-53P 3 +60151 chr9 HAVANA gene 36214441 36277056 5477.0 - 0 ENSG00000159921.15 protein_coding GNE 1 OTTHUMG00000019899.8 +60152 chr9 HAVANA gene 36190856 36304781 2515.0 + 0 ENSG00000122705.16 protein_coding CLTA 1 OTTHUMG00000019896.4 ncRNA_host +60153 chr9 HAVANA gene 36303499 36304924 622.0 - 0 ENSG00000215283.3 processed_pseudogene HMGB3P24 1 OTTHUMG00000019902.1 pseudo_consens +60154 chr9 HAVANA gene 36336396 36487548 6138.0 - 0 ENSG00000137075.17 protein_coding RNF38 2 OTTHUMG00000019905.4 +60155 chr9 HAVANA gene 36572862 36677683 3087.0 + 0 ENSG00000165304.7 protein_coding MELK 2 OTTHUMG00000019906.7 +60156 chr9 ENSEMBL gene 36823539 36823599 61.0 - 0 ENSG00000266255.1 miRNA MIR4475 3 +60157 chr9 HAVANA gene 36856555 36861375 520.0 + 0 ENSG00000258885.1 antisense AL450267.1 2 OTTHUMG00000171060.1 +60158 chr9 ENSEMBL gene 36864254 36864308 55.0 - 0 ENSG00000264922.1 miRNA MIR4540 3 +60159 chr9 ENSEMBL gene 36893462 36893531 70.0 - 0 ENSG00000265368.1 miRNA MIR4476 3 +60160 chr9 HAVANA gene 37002697 37008040 739.0 + 0 ENSG00000250850.2 antisense AL161781.2 1 OTTHUMG00000164643.1 +60161 chr9 HAVANA gene 36833275 37034185 9333.0 - 0 ENSG00000196092.12 protein_coding PAX5 2 OTTHUMG00000019907.3 ncRNA_host +60162 chr9 HAVANA gene 37046835 37047237 403.0 + 0 ENSG00000125385.9 processed_pseudogene AL161781.1 1 OTTHUMG00000019908.1 pseudo_consens +60163 chr9 HAVANA gene 37073531 37075792 947.0 - 0 ENSG00000232920.1 lincRNA LINC01400 2 OTTHUMG00000019909.1 +60164 chr9 HAVANA gene 37078813 37079776 964.0 - 0 ENSG00000260100.1 lincRNA AL512604.3 2 OTTHUMG00000175668.1 +60165 chr9 HAVANA gene 37079857 37090507 6483.0 + 0 ENSG00000281649.1 lincRNA EBLN3P 2 OTTHUMG00000019910.4 +60166 chr9 HAVANA gene 37112548 37115490 1314.0 - 0 ENSG00000233242.2 antisense AL512604.2 2 OTTHUMG00000019911.2 +60167 chr9 ENSEMBL gene 37160137 37160237 101.0 + 0 ENSG00000200502.1 misc_RNA RF00019 3 +60168 chr9 HAVANA gene 37205112 37205368 257.0 - 0 ENSG00000228292.1 processed_pseudogene AL512604.1 1 OTTHUMG00000019912.2 pseudo_consens +60169 chr9 ENSEMBL gene 37322259 37322371 113.0 + 0 ENSG00000206784.1 misc_RNA RF00019 3 +60170 chr9 ENSEMBL gene 37333857 37333957 101.0 - 0 ENSG00000252723.2 snRNA RNU6-677P 3 +60171 chr9 HAVANA gene 37120539 37358149 3992.0 + 0 ENSG00000147905.17 protein_coding ZCCHC7 2 OTTHUMG00000019915.3 ncRNA_host +60172 chr9 HAVANA gene 37383178 37384434 243.0 - 0 ENSG00000224648.1 lincRNA LINC01627 2 OTTHUMG00000019916.1 +60173 chr9 HAVANA gene 37434177 37434586 410.0 + 0 ENSG00000236156.2 processed_pseudogene CHCHD4P3 2 OTTHUMG00000019913.2 overlapping_locus +60174 chr9 HAVANA gene 37422666 37436990 7226.0 + 0 ENSG00000137106.17 protein_coding GRHPR 2 OTTHUMG00000019914.5 overlapping_locus +60175 chr9 HAVANA gene 37438114 37465399 4627.0 - 0 ENSG00000168795.4 protein_coding ZBTB5 2 OTTHUMG00000019918.1 +60176 chr9 HAVANA gene 37477149 37478317 1169.0 + 0 ENSG00000187988.5 processed_pseudogene KCTD9P3 1 OTTHUMG00000019919.2 pseudo_consens +60177 chr9 HAVANA gene 37490421 37490893 473.0 - 0 ENSG00000230188.1 processed_pseudogene AL158156.1 1 OTTHUMG00000019921.1 pseudo_consens +60178 chr9 HAVANA gene 37485935 37503697 2512.0 + 0 ENSG00000137054.15 protein_coding POLR1E 2 OTTHUMG00000019920.3 +60179 chr9 HAVANA gene 37509150 37510299 289.0 + 0 ENSG00000234160.1 antisense AL513165.1 2 OTTHUMG00000019924.1 +60180 chr9 HAVANA gene 37510892 37576349 5997.0 - 0 ENSG00000147912.12 protein_coding FBXO10 2 OTTHUMG00000019926.5 overlapping_locus +60181 chr9 HAVANA gene 37512547 37592469 3217.0 - 0 ENSG00000256966.6 protein_coding AL513165.2 2 OTTHUMG00000168942.2 overlapping_locus +60182 chr9 HAVANA gene 37582646 37592642 3644.0 - 0 ENSG00000175768.12 protein_coding TOMM5 2 OTTHUMG00000019923.2 overlapping_locus +60183 chr9 HAVANA gene 37636688 37637293 606.0 - 0 ENSG00000233111.1 processed_pseudogene RAB1C 2 OTTHUMG00000019925.3 overlapping_locus +60184 chr9 ENSEMBL gene 37661747 37662049 303.0 - 0 ENSG00000201287.1 misc_RNA RN7SKP171 3 +60185 chr9 HAVANA gene 37651000 37746904 5867.0 + 0 ENSG00000070601.9 protein_coding FRMPD1 2 OTTHUMG00000019927.3 +60186 chr9 HAVANA gene 37753803 37778972 2866.0 + 0 ENSG00000165275.9 protein_coding TRMT10B 2 OTTHUMG00000019933.2 +60187 chr9 HAVANA gene 37766978 37801437 3023.0 - 0 ENSG00000107371.12 protein_coding EXOSC3 2 OTTHUMG00000019932.3 overlapping_locus +60188 chr9 HAVANA gene 37836044 37836394 351.0 + 0 ENSG00000232454.2 processed_pseudogene AL138752.1 1 OTTHUMG00000019931.2 pseudo_consens,overlapping_locus +60189 chr9 HAVANA gene 37800502 37867666 8492.0 + 0 ENSG00000122741.15 protein_coding DCAF10 2 OTTHUMG00000019934.2 overlapping_locus +60190 chr9 HAVANA gene 37878116 37879493 1217.0 + 0 ENSG00000226055.2 processed_pseudogene PAICSP1 1 OTTHUMG00000019930.3 pseudo_consens +60191 chr9 HAVANA gene 37885683 37886390 708.0 + 0 ENSG00000213839.4 processed_pseudogene TMX2P1 1 OTTHUMG00000019929.2 pseudo_consens +60192 chr9 HAVANA gene 37879400 37904353 3397.0 - 0 ENSG00000122696.13 protein_coding SLC25A51 2 OTTHUMG00000019935.3 overlapping_locus +60193 chr9 ENSEMBL gene 37936707 37936768 62.0 - 0 ENSG00000251745.1 snRNA RNU7-124P 3 +60194 chr9 HAVANA gene 37588413 38068687 2591.0 - 0 ENSG00000255872.3 protein_coding AL138752.2 2 OTTHUMG00000168975.1 ncRNA_host,overlapping_locus +60195 chr9 HAVANA gene 37919134 38069211 2783.0 - 0 ENSG00000107338.9 protein_coding SHB 2 OTTHUMG00000019936.1 ncRNA_host,overlapping_locus +60196 chr9 ENSEMBL gene 38147428 38147561 134.0 + 0 ENSG00000200026.1 snoRNA RF00096 3 +60197 chr9 HAVANA gene 38360427 38376430 399.0 + 0 ENSG00000223716.2 lincRNA AL135785.1 2 OTTHUMG00000019939.2 +60198 chr9 HAVANA gene 38392664 38398661 3155.0 + 0 ENSG00000137124.7 protein_coding ALDH1B1 2 OTTHUMG00000019938.4 retrogene +60199 chr9 HAVANA gene 38408994 38424447 1093.0 - 0 ENSG00000137142.4 protein_coding IGFBPL1 2 OTTHUMG00000019937.1 +60200 chr9 HAVANA gene 38452782 38454070 1289.0 - 0 ENSG00000225254.2 processed_pseudogene ARMC8P1 1 OTTHUMG00000019940.2 pseudo_consens +60201 chr9 HAVANA gene 38478471 38479350 880.0 + 0 ENSG00000215165.3 processed_pseudogene TCEA1P3 1 OTTHUMG00000019941.2 pseudo_consens +60202 chr9 HAVANA gene 38486859 38488338 1480.0 - 0 ENSG00000229511.1 processed_pseudogene GAS2L1P1 1 OTTHUMG00000019942.1 pseudo_consens +60203 chr9 HAVANA gene 38504447 38505482 1036.0 - 0 ENSG00000237487.1 processed_pseudogene VN1R48P 2 OTTHUMG00000019943.1 +60204 chr9 HAVANA gene 38526831 38527032 202.0 + 0 ENSG00000243085.1 processed_pseudogene AL390726.1 1 OTTHUMG00000019944.1 pseudo_consens +60205 chr9 HAVANA gene 38527097 38527912 816.0 + 0 ENSG00000176007.10 processed_pseudogene FAM220BP 1 OTTHUMG00000019947.2 pseudo_consens +60206 chr9 HAVANA gene 38540567 38542792 871.0 - 0 ENSG00000273036.3 transcribed_processed_pseudogene AL390726.5 2 OTTHUMG00000172707.2 overlapping_locus +60207 chr9 HAVANA gene 38542389 38543215 469.0 - 0 ENSG00000272934.1 processed_transcript AL390726.4 2 OTTHUMG00000019950.3 overlapping_locus +60208 chr9 HAVANA gene 38543104 38543446 343.0 - 0 ENSG00000250989.1 transcribed_processed_pseudogene AL390726.2 2 OTTHUMG00000019945.2 overlapping_locus +60209 chr9 HAVANA gene 38433696 38543880 2140.0 + 0 ENSG00000283162.1 transcribed_unprocessed_pseudogene AL390726.6 2 OTTHUMG00000191640.1 +60210 chr9 HAVANA gene 38566260 38568211 1952.0 - 0 ENSG00000225345.3 transcribed_unprocessed_pseudogene SNX18P3 1 OTTHUMG00000019946.3 pseudo_consens,overlapping_locus +60211 chr9 HAVANA gene 38542479 38568422 635.0 - 0 ENSG00000272904.1 processed_transcript AL390726.3 2 OTTHUMG00000186351.1 overlapping_locus +60212 chr9 HAVANA gene 38540569 38577207 2558.0 - 0 ENSG00000283486.2 protein_coding FAM95C 2 OTTHUMG00000186324.3 overlapping_locus +60213 chr9 HAVANA gene 38571358 38620660 5303.0 - 0 ENSG00000180071.19 protein_coding ANKRD18A 2 OTTHUMG00000186349.1 overlapping_locus +60214 chr9 HAVANA gene 38620474 38624990 3847.0 + 0 ENSG00000204860.4 antisense FAM201A 1 OTTHUMG00000019948.2 +60215 chr9 HAVANA gene 38643042 38643768 727.0 + 0 ENSG00000237557.1 processed_pseudogene YWHABP1 1 OTTHUMG00000019949.1 pseudo_consens +60216 chr9 HAVANA gene 38650215 38662717 4191.0 + 0 ENSG00000284612.1 lincRNA AL591543.1 2 OTTHUMG00000192347.1 +60217 chr9 ENSEMBL gene 38680006 38680104 99.0 + 0 ENSG00000252725.1 snRNA RNU6-765P 3 +60218 chr9 HAVANA gene 38694263 38720428 1376.0 - 0 ENSG00000283329.1 protein_coding FAM240B 2 OTTHUMG00000191736.1 +60219 chr9 HAVANA gene 38804007 38851916 891.0 + 0 ENSG00000228467.2 lincRNA AL845311.1 2 OTTHUMG00000019951.2 +60220 chr9 HAVANA gene 39016969 39039594 1412.0 + 0 ENSG00000234680.1 unitary_pseudogene VN2R3P 2 OTTHUMG00000152821.1 +60221 chr9 HAVANA gene 39154075 39155479 1190.0 + 0 ENSG00000226625.1 processed_pseudogene RBM17P1 1 OTTHUMG00000019952.1 pseudo_consens +60222 chr9 HAVANA gene 39159071 39160319 1249.0 + 0 ENSG00000271454.1 processed_pseudogene AL353729.2 1 OTTHUMG00000184684.1 pseudo_consens +60223 chr9 HAVANA gene 39173794 39174513 720.0 - 0 ENSG00000243695.1 processed_pseudogene AL353729.1 1 OTTHUMG00000019953.1 pseudo_consens,overlapping_locus +60224 chr9 ENSEMBL gene 39191100 39191360 261.0 + 0 ENSG00000278825.1 misc_RNA RN7SL640P 3 +60225 chr9 HAVANA gene 39072767 39288315 9521.0 - 0 ENSG00000106714.17 protein_coding CNTNAP3 2 OTTHUMG00000019954.4 overlapping_locus +60226 chr9 HAVANA gene 39355669 39361959 4354.0 + 0 ENSG00000204849.7 protein_coding SPATA31A1 2 OTTHUMG00000013156.2 +60227 chr9 HAVANA gene 39359890 39369105 2090.0 - 0 ENSG00000277024.1 transcribed_processed_pseudogene BX005214.3 1 OTTHUMG00000013158.2 pseudo_consens +60228 chr9 HAVANA gene 39371065 39376916 637.0 + 0 ENSG00000215112.6 lincRNA FAM74A1 2 OTTHUMG00000067121.2 +60229 chr9 HAVANA gene 39395737 39397406 1077.0 - 0 ENSG00000231140.3 lincRNA BX005214.2 2 OTTHUMG00000067120.3 overlapping_locus +60230 chr9 HAVANA gene 39384506 39405305 476.0 - 0 ENSG00000224038.1 lincRNA BX005214.1 2 OTTHUMG00000067122.1 overlapping_locus +60231 chr9 HAVANA gene 39485379 39485865 487.0 + 0 ENSG00000229707.1 processed_pseudogene SKP1P3 1 OTTHUMG00000013209.1 pseudo_consens +60232 chr9 HAVANA gene 39443815 39508885 3897.0 - 0 ENSG00000198416.9 transcribed_unprocessed_pseudogene ZNF658B 2 OTTHUMG00000171406.7 +60233 chr9 HAVANA gene 39631046 39632416 1371.0 + 0 ENSG00000269692.1 processed_pseudogene FKBP4P2 1 OTTHUMG00000013210.2 pseudo_consens +60234 chr9 HAVANA gene 39651901 39652377 477.0 - 0 ENSG00000273994.1 processed_pseudogene SDR42E1P1 1 OTTHUMG00000067164.3 pseudo_consens +60235 chr9 HAVANA gene 39654241 39655531 1291.0 - 0 ENSG00000234720.3 processed_pseudogene ATP5F1AP8 1 OTTHUMG00000013211.3 pseudo_consens +60236 chr9 HAVANA gene 39734670 39735628 641.0 + 0 ENSG00000226108.2 processed_pseudogene RAB28P1 1 OTTHUMG00000067166.2 pseudo_consens +60237 chr9 HAVANA gene 39739747 39741193 1447.0 - 0 ENSG00000232239.2 processed_pseudogene RBPJP5 1 OTTHUMG00000058627.2 pseudo_consens +60238 chr9 HAVANA gene 39809562 39810019 458.0 + 0 ENSG00000229273.1 processed_pseudogene BX664615.1 2 OTTHUMG00000058638.1 +60239 chr9 HAVANA gene 39748514 39810097 4232.0 - 0 ENSG00000278175.3 lincRNA GLIDR 2 OTTHUMG00000189744.2 +60240 chr9 HAVANA gene 39816600 39874206 1739.0 - 0 ENSG00000283886.2 processed_transcript BX664615.2 2 OTTHUMG00000067165.4 overlapping_locus +60241 chr9 HAVANA gene 39873931 39874390 460.0 - 0 ENSG00000276692.1 processed_pseudogene CR769767.2 2 OTTHUMG00000188716.1 overlapping_locus +60242 chr9 ENSEMBL gene 39886861 39887144 284.0 - 0 ENSG00000277774.1 misc_RNA RN7SL763P 3 +60243 chr9 ENSEMBL gene 39892446 39892540 95.0 + 0 ENSG00000252724.1 snoRNA RF00156 3 +60244 chr9 HAVANA gene 39892550 39892895 346.0 + 0 ENSG00000232798.1 processed_pseudogene CR769767.1 2 OTTHUMG00000058631.1 +60245 chr9 HAVANA gene 39983821 39984401 581.0 - 0 ENSG00000184961.5 processed_pseudogene RPL7AP49 1 OTTHUMG00000066713.2 pseudo_consens +60246 chr9 HAVANA gene 40105822 40106527 706.0 + 0 ENSG00000237846.1 processed_pseudogene AL773545.3 2 OTTHUMG00000013280.1 +60247 chr9 HAVANA gene 39983793 40106611 1066.0 - 0 ENSG00000284116.1 processed_transcript AL772307.1 2 OTTHUMG00000192169.1 overlapping_locus +60248 chr9 HAVANA gene 39816542 40106661 1707.0 - 0 ENSG00000204837.4 transcribed_unprocessed_pseudogene FGF7P3 2 OTTHUMG00000192168.2 overlapping_locus +60249 chr9 HAVANA gene 40121962 40122540 579.0 + 0 ENSG00000230804.2 unprocessed_pseudogene C2orf27AP3 2 OTTHUMG00000013281.2 +60250 chr9 HAVANA gene 40131747 40132218 472.0 + 0 ENSG00000236966.1 processed_pseudogene AL773545.2 2 OTTHUMG00000066718.1 overlapping_locus +60251 chr9 HAVANA gene 40130921 40153147 347.0 + 0 ENSG00000228136.1 lincRNA AL773545.1 2 OTTHUMG00000066714.1 overlapping_locus +60252 chr9 HAVANA gene 40167392 40171329 310.0 + 0 ENSG00000283211.1 unprocessed_pseudogene AL773545.4 2 OTTHUMG00000191825.1 +60253 chr9 HAVANA gene 40187792 40193921 1097.0 - 0 ENSG00000283246.1 unprocessed_pseudogene MEP1AP1 2 OTTHUMG00000191826.1 +60254 chr9 ENSEMBL gene 40233923 40234029 107.0 + 0 ENSG00000212441.1 snRNA RNU6-1269P 3 +60255 chr9 HAVANA gene 40223285 40266392 3954.0 + 0 ENSG00000183148.6 protein_coding ANKRD20A2 2 OTTHUMG00000058641.2 ncRNA_host,overlapping_locus +60256 chr9 HAVANA gene 40291275 40291502 228.0 - 0 ENSG00000234812.1 processed_pseudogene BX664727.2 2 OTTHUMG00000066719.1 +60257 chr9 HAVANA gene 40293082 40293955 874.0 + 0 ENSG00000231390.1 unprocessed_pseudogene SNX18P8 1 OTTHUMG00000066716.1 pseudo_consens,overlapping_locus +60258 chr9 HAVANA gene 40321299 40329221 7923.0 + 0 ENSG00000223839.7 lincRNA FAM95B1 2 OTTHUMG00000058623.2 overlapping_locus +60259 chr9 HAVANA gene 40264971 40329221 2248.0 + 0 ENSG00000240240.8 processed_transcript BX664727.3 2 OTTHUMG00000058636.6 overlapping_locus +60260 chr9 HAVANA gene 40332995 40333460 466.0 - 0 ENSG00000224681.1 unprocessed_pseudogene BX664727.1 2 OTTHUMG00000066720.1 +60261 chr9 HAVANA gene 40346144 40347052 909.0 - 0 ENSG00000227069.1 processed_pseudogene CNN2P2 1 OTTHUMG00000067498.1 pseudo_consens +60262 chr9 HAVANA gene 40348599 40349791 1193.0 + 0 ENSG00000232433.2 processed_pseudogene GXYLT1P3 1 OTTHUMG00000067497.2 pseudo_consens +60263 chr9 HAVANA gene 40358454 40358682 229.0 + 0 ENSG00000274157.1 processed_pseudogene AL591471.1 2 OTTHUMG00000187748.1 +60264 chr9 HAVANA gene 40481559 40497591 1038.0 - 0 ENSG00000274067.1 unprocessed_pseudogene FP885919.1 2 OTTHUMG00000188952.1 +60265 chr9 HAVANA gene 40481558 40497592 1049.0 - 0 ENSG00000278122.1 unprocessed_pseudogene AQP7P5 2 OTTHUMG00000013285.8 +60266 chr9 HAVANA gene 40505399 40566281 606.0 - 0 ENSG00000276500.1 lincRNA BMS1P14 2 OTTHUMG00000066753.3 +60267 chr9 HAVANA gene 40497850 40566779 3614.0 + 0 ENSG00000184906.11 transcribed_unprocessed_pseudogene AMYH02020865.1 2 OTTHUMG00000066754.7 +60268 chr9 HAVANA gene 40611252 40622155 1263.0 - 0 ENSG00000276266.1 lincRNA FP325318.1 2 OTTHUMG00000188953.1 +60269 chr9 HAVANA gene 40641841 40642117 277.0 - 0 ENSG00000225380.4 IG_V_pseudogene IGKV1OR9-2 1 OTTHUMG00000066755.3 pseudo_consens +60270 chr9 ENSEMBL gene 40759600 40759706 107.0 - 0 ENSG00000278331.1 snRNA RNU6-156P 3 +60271 chr9 HAVANA gene 40755407 40767875 657.0 - 0 ENSG00000276963.1 unprocessed_pseudogene AL353626.3 2 OTTHUMG00000188577.2 +60272 chr9 HAVANA gene 40767870 40806344 507.0 + 0 ENSG00000275390.1 lincRNA AL353626.1 2 OTTHUMG00000188578.1 +60273 chr9 HAVANA gene 40883634 40883763 130.0 + 0 ENSG00000276868.1 processed_pseudogene AL353626.2 1 OTTHUMG00000188579.1 pseudo_consens +60274 chr9 ENSEMBL gene 40929010 40929092 83.0 - 0 ENSG00000275377.1 miRNA MIR1299 3 +60275 chr9 HAVANA gene 41012231 41014133 1903.0 + 0 ENSG00000280077.1 TEC AL353763.2 2 OTTHUMG00000188613.1 overlapping_locus +60276 chr9 HAVANA gene 41061290 41062917 1628.0 + 0 ENSG00000279456.1 TEC AL353763.1 2 OTTHUMG00000188614.1 +60277 chr9 HAVANA gene 41006999 41074617 1980.0 - 0 ENSG00000277778.2 transcribed_unprocessed_pseudogene PGM5P2 2 OTTHUMG00000188612.4 +60278 chr9 HAVANA gene 41073710 41076392 681.0 + 0 ENSG00000225655.5 lincRNA BX255923.1 2 OTTHUMG00000188615.2 +60279 chr9 HAVANA gene 41100794 41106229 3064.0 - 0 ENSG00000276462.1 lincRNA BX255923.2 2 OTTHUMG00000188616.2 +60280 chr9 HAVANA gene 41126430 41128463 2034.0 - 0 ENSG00000273514.1 protein_coding FOXD4L6 2 OTTHUMG00000188618.2 +60281 chr9 HAVANA gene 41131306 41199261 10393.0 - 0 ENSG00000215126.10 protein_coding CBWD6 2 OTTHUMG00000067194.5 +60282 chr9 HAVANA gene 40992249 41218410 1699.0 + 0 ENSG00000276291.5 transcribed_unprocessed_pseudogene FRG1HP 2 OTTHUMG00000188611.2 overlapping_locus +60283 chr9 ENSEMBL gene 41233755 41233835 81.0 + 0 ENSG00000276029.1 miRNA MIR4477A 3 +60284 chr9 ENSEMBL gene 41237440 41237557 118.0 - 0 ENSG00000277049.1 rRNA RNA5SP530 3 +60285 chr9 HAVANA gene 41269916 41273997 4082.0 - 0 ENSG00000279561.2 TEC AL845472.2 2 OTTHUMG00000191375.1 +60286 chr9 HAVANA gene 41280460 41280787 328.0 + 0 ENSG00000278647.1 transcribed_processed_pseudogene CDK2AP2P1 1 OTTHUMG00000188454.2 pseudo_consens,overlapping_locus +60287 chr9 HAVANA gene 41276280 41282846 3123.0 + 0 ENSG00000275450.1 lincRNA AL845472.1 2 OTTHUMG00000188453.2 overlapping_locus +60288 chr9 HAVANA gene 41292887 41294125 1239.0 + 0 ENSG00000274680.1 processed_pseudogene MYO5BP1 1 OTTHUMG00000188455.1 pseudo_consens +60289 chr9 HAVANA gene 41310816 41332962 371.0 - 0 ENSG00000276502.1 lincRNA AL354718.2 2 OTTHUMG00000188490.3 +60290 chr9 HAVANA gene 41341000 41342041 581.0 - 0 ENSG00000276832.1 unprocessed_pseudogene AL354718.3 2 OTTHUMG00000188491.2 +60291 chr9 HAVANA gene 41479960 41480548 589.0 + 0 ENSG00000275160.1 processed_pseudogene AL354718.1 1 OTTHUMG00000188492.1 pseudo_consens +60292 chr9 HAVANA gene 41573156 41573453 298.0 - 0 ENSG00000277340.1 processed_pseudogene AL591926.5 2 OTTHUMG00000188510.1 +60293 chr9 ENSEMBL gene 41573512 41573606 95.0 - 0 ENSG00000276094.1 snoRNA RF00156 3 +60294 chr9 ENSEMBL gene 41578903 41579186 284.0 + 0 ENSG00000276562.1 misc_RNA RN7SL565P 3 +60295 chr9 HAVANA gene 41644430 41644770 341.0 - 0 ENSG00000275493.1 processed_pseudogene AL591926.2 2 OTTHUMG00000188511.1 +60296 chr9 HAVANA gene 41644771 41644981 211.0 + 0 ENSG00000278077.1 processed_pseudogene AL591926.9 2 OTTHUMG00000188512.1 +60297 chr9 HAVANA gene 41647825 41648035 211.0 - 0 ENSG00000278054.1 processed_pseudogene AL591926.8 2 OTTHUMG00000188529.1 +60298 chr9 HAVANA gene 41648023 41648425 403.0 + 0 ENSG00000276135.1 processed_pseudogene AL591926.3 2 OTTHUMG00000188514.1 +60299 chr9 HAVANA gene 41651935 41652172 238.0 - 0 ENSG00000276412.1 processed_pseudogene AL591926.4 2 OTTHUMG00000188515.1 +60300 chr9 HAVANA gene 41652895 41652973 79.0 - 0 ENSG00000277979.1 processed_pseudogene AL591926.6 2 OTTHUMG00000188516.1 +60301 chr9 ENSEMBL gene 41672295 41672406 112.0 - 0 ENSG00000278028.1 misc_RNA RF00019 3 +60302 chr9 HAVANA gene 41657708 41699072 1123.0 - 0 ENSG00000275239.4 lincRNA FAM242F 2 OTTHUMG00000189107.1 ncRNA_host +60303 chr9 HAVANA gene 41700480 41700696 217.0 - 0 ENSG00000274688.1 processed_pseudogene AL591926.1 2 OTTHUMG00000188530.1 +60304 chr9 HAVANA gene 41700682 41701096 415.0 + 0 ENSG00000278001.1 processed_pseudogene AL591926.7 2 OTTHUMG00000188517.1 +60305 chr9 HAVANA gene 41760088 41764175 1855.0 + 0 ENSG00000275297.1 processed_transcript AL162731.1 2 OTTHUMG00000188522.1 +60306 chr9 HAVANA gene 41974362 41975768 1192.0 + 0 ENSG00000237207.2 processed_pseudogene RBM17P3 1 OTTHUMG00000058637.2 pseudo_consens +60307 chr9 HAVANA gene 41979352 41983753 1809.0 + 0 ENSG00000270909.1 processed_pseudogene CR788268.1 1 OTTHUMG00000184630.1 pseudo_consens +60308 chr9 ENSEMBL gene 42011350 42011610 261.0 + 0 ENSG00000273717.1 misc_RNA RN7SL343P 3 +60309 chr9 HAVANA gene 41890314 42129510 13220.0 - 0 ENSG00000154529.14 protein_coding CNTNAP3B 2 OTTHUMG00000013174.11 +60310 chr9 HAVANA gene 42183659 42189882 4307.0 + 0 ENSG00000185775.9 protein_coding SPATA31A6 2 OTTHUMG00000013224.1 +60311 chr9 HAVANA gene 42196333 42196662 330.0 - 0 ENSG00000239986.2 processed_pseudogene AL445584.1 1 OTTHUMG00000013225.2 pseudo_consens +60312 chr9 HAVANA gene 42199000 42204988 727.0 + 0 ENSG00000277260.1 lincRNA FAM74A7 2 OTTHUMG00000187514.1 +60313 chr9 HAVANA gene 42213841 42213918 78.0 - 0 ENSG00000276277.1 processed_pseudogene AL445584.3 2 OTTHUMG00000187755.1 +60314 chr9 HAVANA gene 42231811 42354454 616.0 + 0 ENSG00000275649.1 lincRNA AL445584.2 2 OTTHUMG00000189109.1 +60315 chr9 HAVANA gene 42384805 42386136 1332.0 + 0 ENSG00000268234.1 processed_pseudogene FKBP4P6 1 OTTHUMG00000066806.2 pseudo_consens +60316 chr9 HAVANA gene 42408526 42409006 481.0 - 0 ENSG00000277213.1 processed_pseudogene SDR42E1P2 1 OTTHUMG00000189110.1 pseudo_consens +60317 chr9 HAVANA gene 42410830 42412150 1321.0 - 0 ENSG00000234861.2 processed_pseudogene ATP5F1AP1 1 OTTHUMG00000066804.3 pseudo_consens +60318 chr9 HAVANA gene 42492663 42493570 597.0 + 0 ENSG00000227353.1 processed_pseudogene RAB28P3 1 OTTHUMG00000013227.1 pseudo_consens +60319 chr9 HAVANA gene 42497704 42499134 1431.0 - 0 ENSG00000227924.2 processed_pseudogene RBPJP6 1 OTTHUMG00000013226.2 pseudo_consens +60320 chr9 HAVANA gene 42568865 42569315 451.0 + 0 ENSG00000212952.6 processed_pseudogene BX088651.1 2 OTTHUMG00000187213.2 overlapping_locus +60321 chr9 HAVANA gene 42566679 42569353 2579.0 - 0 ENSG00000237357.2 lincRNA BX088651.4 2 OTTHUMG00000013230.1 +60322 chr9 HAVANA gene 42579414 42586534 3614.0 - 0 ENSG00000229311.1 lincRNA BX088651.2 2 OTTHUMG00000067212.1 +60323 chr9 HAVANA gene 42625436 42626813 291.0 + 0 ENSG00000204816.5 unprocessed_pseudogene FGF7P5 2 OTTHUMG00000013228.3 overlapping_locus +60324 chr9 HAVANA gene 42636788 42637139 352.0 - 0 ENSG00000230245.2 processed_pseudogene BX088651.3 2 OTTHUMG00000067211.2 +60325 chr9 HAVANA gene 42667506 42668887 295.0 - 0 ENSG00000216829.6 unprocessed_pseudogene FGF7P4 2 OTTHUMG00000013561.2 +60326 chr9 HAVANA gene 42707800 42714539 3224.0 + 0 ENSG00000233424.2 lincRNA BX664718.1 2 OTTHUMG00000058152.2 +60327 chr9 HAVANA gene 42795392 42800672 1659.0 + 0 ENSG00000204818.4 unprocessed_pseudogene ADGRF5P2 2 OTTHUMG00000013558.2 +60328 chr9 HAVANA gene 42817105 42823213 1087.0 - 0 ENSG00000224537.1 unprocessed_pseudogene MEP1AP4 2 OTTHUMG00000013568.1 +60329 chr9 ENSEMBL gene 42863200 42863306 107.0 + 0 ENSG00000238529.1 snRNA RNU6-599P 3 +60330 chr9 HAVANA gene 42852675 42894751 2414.0 + 0 ENSG00000236816.2 unprocessed_pseudogene ANKRD20A7P 2 OTTHUMG00000066784.3 +60331 chr9 HAVANA gene 42901238 42920095 1699.0 + 0 ENSG00000170165.5 unprocessed_pseudogene CR848007.1 2 OTTHUMG00000066794.1 +60332 chr9 HAVANA gene 42921443 42921670 228.0 - 0 ENSG00000273900.1 processed_pseudogene CR848007.3 2 OTTHUMG00000188573.1 +60333 chr9 HAVANA gene 42923277 42924144 868.0 + 0 ENSG00000275144.1 unprocessed_pseudogene SNX18P5 1 OTTHUMG00000188574.1 pseudo_consens +60334 chr9 HAVANA gene 42950566 42951630 549.0 + 0 ENSG00000230635.2 unprocessed_pseudogene CYP4F60P 2 OTTHUMG00000188575.1 +60335 chr9 HAVANA gene 42959280 42960066 787.0 - 0 ENSG00000229079.1 processed_pseudogene CR848007.2 2 OTTHUMG00000066792.1 +60336 chr9 HAVANA gene 42972386 42973289 904.0 - 0 ENSG00000213816.3 processed_pseudogene CNN2P4 1 OTTHUMG00000066793.2 pseudo_consens +60337 chr9 HAVANA gene 42974855 42978320 1630.0 + 0 ENSG00000276591.1 transcribed_processed_pseudogene GXYLT1P5 1 OTTHUMG00000188571.2 pseudo_consens +60338 chr9 HAVANA gene 42978851 42979918 535.0 + 0 ENSG00000277697.1 lincRNA AL591441.2 2 OTTHUMG00000188956.1 +60339 chr9 HAVANA gene 42981772 42988167 2247.0 + 0 ENSG00000276128.1 lincRNA AL591441.1 2 OTTHUMG00000188572.2 +60340 chr9 HAVANA gene 43109866 43125905 1042.0 - 0 ENSG00000277737.3 unprocessed_pseudogene FP325317.1 2 OTTHUMG00000192022.1 +60341 chr9 HAVANA gene 60546920 60547154 235.0 - 0 ENSG00000277598.1 processed_pseudogene BX088702.1 2 OTTHUMG00000188282.1 +60342 chr9 HAVANA gene 60914374 60920650 4256.0 + 0 ENSG00000276581.2 protein_coding SPATA31A5 2 OTTHUMG00000188283.2 +60343 chr9 HAVANA gene 60918581 60927822 1988.0 - 0 ENSG00000275628.2 transcribed_processed_pseudogene AL590491.1 1 OTTHUMG00000188285.2 pseudo_consens +60344 chr9 HAVANA gene 60929774 60936746 1802.0 + 0 ENSG00000274516.2 transcribed_processed_pseudogene FAM74A6 2 OTTHUMG00000188286.2 +60345 chr9 HAVANA gene 60944555 60944636 82.0 - 0 ENSG00000278485.1 processed_pseudogene AL590491.3 2 OTTHUMG00000188287.1 +60346 chr9 HAVANA gene 60943311 60964185 970.0 - 0 ENSG00000276422.1 lincRNA AL590491.2 2 OTTHUMG00000188292.1 +60347 chr9 HAVANA gene 61063752 61113954 1518.0 - 0 ENSG00000283541.1 unprocessed_pseudogene BX005040.4 2 OTTHUMG00000191702.1 +60348 chr9 HAVANA gene 61190003 61196280 4989.0 + 0 ENSG00000276040.4 protein_coding SPATA31A7 2 OTTHUMG00000188536.1 +60349 chr9 HAVANA gene 61202718 61203087 370.0 - 0 ENSG00000276149.1 transcribed_processed_pseudogene BX005040.2 1 OTTHUMG00000188538.1 pseudo_consens,overlapping_locus +60350 chr9 HAVANA gene 61194211 61203446 1988.0 - 0 ENSG00000277412.1 antisense BX005040.3 2 OTTHUMG00000188537.1 overlapping_locus +60351 chr9 HAVANA gene 61205258 61212373 1956.0 + 0 ENSG00000274583.1 transcribed_processed_pseudogene FAM74A4 2 OTTHUMG00000188539.2 +60352 chr9 HAVANA gene 61229913 61231863 1126.0 - 0 ENSG00000275676.1 lincRNA BX005040.1 2 OTTHUMG00000188540.1 +60353 chr9 ENSEMBL gene 61427617 61427877 261.0 - 0 ENSG00000276522.1 misc_RNA RN7SL462P 3 +60354 chr9 HAVANA gene 61330717 61453030 1728.0 + 0 ENSG00000283378.1 protein_coding CNTNAP3C 2 OTTHUMG00000191808.1 +60355 chr9 HAVANA gene 61581813 61582675 232.0 + 0 ENSG00000277109.1 unprocessed_pseudogene AL935212.3 2 OTTHUMG00000187757.1 +60356 chr9 HAVANA gene 61615876 61627683 718.0 + 0 ENSG00000231248.2 lincRNA FAM242D 2 OTTHUMG00000067216.2 +60357 chr9 ENSEMBL gene 61642383 61642494 112.0 + 0 ENSG00000238933.1 misc_RNA RF00019 3 +60358 chr9 HAVANA gene 61659733 61662690 997.0 + 0 ENSG00000204814.5 lincRNA AL935212.1 2 OTTHUMG00000067215.3 +60359 chr9 HAVANA gene 61665579 61666386 284.0 + 0 ENSG00000231454.2 processed_pseudogene AL935212.2 2 OTTHUMG00000013236.1 +60360 chr9 ENSEMBL gene 61789143 61789426 284.0 + 0 ENSG00000273940.1 misc_RNA RN7SL722P 3 +60361 chr9 HAVANA gene 61854162 61855331 616.0 + 0 ENSG00000154537.4 lincRNA FAM27C 2 OTTHUMG00000013240.1 +60362 chr9 HAVANA gene 61858710 61858908 199.0 + 0 ENSG00000277624.1 processed_pseudogene AL391987.6 2 OTTHUMG00000188549.1 +60363 chr9 HAVANA gene 61861995 61862336 342.0 + 0 ENSG00000204805.8 processed_pseudogene AL391987.2 2 OTTHUMG00000184179.1 +60364 chr9 HAVANA gene 61861853 61862567 200.0 - 0 ENSG00000170152.4 processed_pseudogene AL391987.1 2 OTTHUMG00000013246.1 +60365 chr9 HAVANA gene 61865755 61866965 439.0 - 0 ENSG00000235659.1 lincRNA AL391987.4 2 OTTHUMG00000013244.1 +60366 chr9 ENSEMBL gene 61883640 61883751 112.0 - 0 ENSG00000238749.1 misc_RNA RF00019 3 +60367 chr9 HAVANA gene 61868727 61887084 492.0 + 0 ENSG00000223379.1 lincRNA AL391987.3 2 OTTHUMG00000013243.1 +60368 chr9 HAVANA gene 61898805 61911022 778.0 - 0 ENSG00000229697.2 lincRNA FAM242E 2 OTTHUMG00000013242.2 +60369 chr9 HAVANA gene 61912704 61913115 412.0 + 0 ENSG00000276795.1 processed_pseudogene AL391987.5 2 OTTHUMG00000188551.1 +60370 chr9 HAVANA gene 61944232 61945136 219.0 - 0 ENSG00000276845.1 unprocessed_pseudogene CR769775.3 2 OTTHUMG00000187761.1 +60371 chr9 HAVANA gene 61972240 61976380 1940.0 + 0 ENSG00000231527.5 processed_transcript CR769775.1 2 OTTHUMG00000013241.2 +60372 chr9 HAVANA gene 61982796 61986934 4139.0 + 0 ENSG00000284471.1 TEC CR769775.4 2 OTTHUMG00000191984.1 +60373 chr9 HAVANA gene 62028426 62076349 891.0 + 0 ENSG00000231838.1 lincRNA CR769775.2 2 OTTHUMG00000058669.1 +60374 chr9 HAVANA gene 62266319 62266919 601.0 + 0 ENSG00000231995.2 processed_pseudogene AL590399.4 1 OTTHUMG00000013298.1 pseudo_consens +60375 chr9 HAVANA gene 62349941 62351536 787.0 - 0 ENSG00000231212.1 lincRNA AL590399.3 2 OTTHUMG00000013300.1 +60376 chr9 HAVANA gene 62357834 62358140 307.0 - 0 ENSG00000236450.1 processed_pseudogene AL590399.6 2 OTTHUMG00000034379.1 +60377 chr9 ENSEMBL gene 62358191 62358285 95.0 - 0 ENSG00000252133.1 snoRNA RF00156 3 +60378 chr9 ENSEMBL gene 62363581 62363864 284.0 + 0 ENSG00000275230.1 misc_RNA RN7SL544P 3 +60379 chr9 HAVANA gene 62374128 62376836 2709.0 - 0 ENSG00000204802.3 lincRNA AL590399.1 2 OTTHUMG00000013301.1 +60380 chr9 HAVANA gene 62387171 62394004 3325.0 - 0 ENSG00000233651.2 lincRNA AL590399.5 2 OTTHUMG00000067237.2 +60381 chr9 HAVANA gene 62395370 62395678 309.0 - 0 ENSG00000226429.2 unprocessed_pseudogene AL590399.2 2 OTTHUMG00000013299.2 +60382 chr9 HAVANA gene 62376161 62435199 2977.0 + 0 ENSG00000227449.8 transcribed_unprocessed_pseudogene FGF7P6 2 OTTHUMG00000013302.3 +60383 chr9 HAVANA gene 62444256 62444634 379.0 - 0 ENSG00000224603.1 processed_pseudogene BX664725.1 2 OTTHUMG00000058625.1 +60384 chr9 HAVANA gene 62474948 62476333 227.0 - 0 ENSG00000204801.7 unprocessed_pseudogene FGF7P7 2 OTTHUMG00000058630.1 +60385 chr9 HAVANA gene 62515191 62522018 3321.0 + 0 ENSG00000232827.2 lincRNA LINC01189 2 OTTHUMG00000058150.1 +60386 chr9 HAVANA gene 62532397 62532853 457.0 - 0 ENSG00000212951.5 unprocessed_pseudogene BX005266.1 2 OTTHUMG00000013218.1 +60387 chr9 HAVANA gene 62532337 62534724 2274.0 + 0 ENSG00000226007.2 lincRNA BX005266.2 2 OTTHUMG00000013217.2 +60388 chr9 HAVANA gene 62559839 62569907 888.0 + 0 ENSG00000278213.1 unprocessed_pseudogene CNTNAP3P5 2 OTTHUMG00000187765.1 +60389 chr9 HAVANA gene 62601226 62602672 1447.0 + 0 ENSG00000234217.2 processed_pseudogene RBPJP7 1 OTTHUMG00000013219.2 pseudo_consens +60390 chr9 HAVANA gene 62606797 62607748 641.0 - 0 ENSG00000236825.2 processed_pseudogene RAB28P2 1 OTTHUMG00000013220.2 pseudo_consens +60391 chr9 HAVANA gene 62609725 62610799 1075.0 - 0 ENSG00000234451.1 processed_pseudogene BX005266.3 2 OTTHUMG00000013221.1 +60392 chr9 HAVANA gene 62686912 62688190 1279.0 + 0 ENSG00000241571.2 processed_pseudogene ATP5F1AP7 1 OTTHUMG00000013191.2 pseudo_consens +60393 chr9 HAVANA gene 62690033 62690534 502.0 + 0 ENSG00000234276.1 processed_pseudogene SDR42E1P3 1 OTTHUMG00000013193.1 pseudo_consens +60394 chr9 HAVANA gene 62710036 62711398 1363.0 - 0 ENSG00000235256.1 processed_pseudogene FKBP4P7 1 OTTHUMG00000013190.2 pseudo_consens +60395 chr9 ENSEMBL gene 62802320 62802438 119.0 - 0 ENSG00000202474.1 rRNA_pseudogene RNA5SP283 3 +60396 chr9 HAVANA gene 62801461 62813486 3038.0 + 0 ENSG00000238113.6 lincRNA LINC01410 2 OTTHUMG00000013291.3 +60397 chr9 HAVANA gene 62837139 62838302 1164.0 - 0 ENSG00000229422.2 lincRNA AL512625.2 2 OTTHUMG00000192597.1 +60398 chr9 HAVANA gene 62838824 62844276 526.0 + 0 ENSG00000184523.4 transcribed_processed_pseudogene PTGER4P2 2 OTTHUMG00000058168.3 +60399 chr9 HAVANA gene 62844818 62845184 367.0 + 0 ENSG00000237451.3 processed_pseudogene CDK2AP2P2 1 OTTHUMG00000013292.1 pseudo_consens +60400 chr9 HAVANA gene 62857208 62858484 1277.0 + 0 ENSG00000238245.2 processed_pseudogene MYO5BP2 1 OTTHUMG00000058165.2 pseudo_consens +60401 chr9 HAVANA gene 62860873 62864957 1489.0 - 0 ENSG00000227582.2 transcribed_processed_pseudogene ADGRF5P1 2 OTTHUMG00000058166.2 overlapping_locus +60402 chr9 HAVANA gene 62888535 62889921 292.0 + 0 ENSG00000219693.3 unprocessed_pseudogene FGF7P8 2 OTTHUMG00000067257.1 +60403 chr9 HAVANA gene 62856999 62898087 4241.0 - 0 ENSG00000234665.8 lincRNA AL512625.3 2 OTTHUMG00000013293.5 overlapping_locus +60404 chr9 HAVANA gene 62897449 62900104 2541.0 + 0 ENSG00000170161.6 lincRNA AL512625.1 2 OTTHUMG00000013294.2 +60405 chr9 HAVANA gene 62924911 62934964 906.0 + 0 ENSG00000273509.1 unprocessed_pseudogene CNTNAP3P1 2 OTTHUMG00000187791.1 +60406 chr9 HAVANA gene 63025597 63025993 397.0 + 0 ENSG00000244081.1 unprocessed_pseudogene AL591379.2 2 OTTHUMG00000134319.1 +60407 chr9 HAVANA gene 63055641 63059217 885.0 + 0 ENSG00000198312.4 unprocessed_pseudogene BMS1P9 2 OTTHUMG00000034439.2 +60408 chr9 HAVANA gene 63111255 63127100 5046.0 - 0 ENSG00000182021.10 transcribed_unprocessed_pseudogene AL591379.1 2 OTTHUMG00000067266.5 +60409 chr9 HAVANA gene 63127359 63143401 1042.0 + 0 ENSG00000176115.9 unprocessed_pseudogene AQP7P4 2 OTTHUMG00000013311.3 +60410 chr9 HAVANA gene 63317067 63333091 1045.0 - 0 ENSG00000186466.5 unprocessed_pseudogene AQP7P1 2 OTTHUMG00000013312.3 overlapping_locus +60411 chr9 HAVANA gene 63330326 63343660 873.0 + 0 ENSG00000228522.2 transcribed_unprocessed_pseudogene AL845321.1 2 OTTHUMG00000067275.3 +60412 chr9 HAVANA gene 63299453 63385117 1596.0 - 0 ENSG00000237238.3 transcribed_unprocessed_pseudogene BMS1P10 2 OTTHUMG00000067277.2 overlapping_locus +60413 chr9 HAVANA gene 63581254 63581834 581.0 - 0 ENSG00000233555.2 processed_pseudogene AL591438.1 1 OTTHUMG00000013317.2 pseudo_consens +60414 chr9 HAVANA gene 63703065 63703755 691.0 + 0 ENSG00000234042.1 processed_pseudogene AL591438.2 2 OTTHUMG00000067322.1 +60415 chr9 HAVANA gene 63719864 63720441 578.0 + 0 ENSG00000268951.1 processed_pseudogene AL772155.3 2 OTTHUMG00000058677.2 +60416 chr9 HAVANA gene 63729702 63730173 472.0 + 0 ENSG00000225360.1 processed_pseudogene AL772155.2 2 OTTHUMG00000058667.1 overlapping_locus +60417 chr9 HAVANA gene 63728877 63744910 347.0 + 0 ENSG00000224267.1 lincRNA AL772155.1 2 OTTHUMG00000058671.1 overlapping_locus +60418 chr9 HAVANA gene 63761546 63762824 1279.0 - 0 ENSG00000228656.1 processed_pseudogene MYO5BP3 1 OTTHUMG00000058679.1 pseudo_consens +60419 chr9 HAVANA gene 63774870 63775241 372.0 - 0 ENSG00000226020.4 processed_pseudogene CDK2AP2P3 1 OTTHUMG00000058678.2 pseudo_consens +60420 chr9 HAVANA gene 63775892 63776143 252.0 - 0 ENSG00000239684.2 processed_pseudogene PTGER4P3 2 OTTHUMG00000058665.2 +60421 chr9 ENSEMBL gene 63813190 63813307 118.0 + 0 ENSG00000207277.1 rRNA_pseudogene RNA5SP284 3 +60422 chr9 HAVANA gene 63802144 63814159 2878.0 - 0 ENSG00000225411.3 lincRNA CR786580.1 2 OTTHUMG00000058662.3 +60423 chr9 HAVANA gene 63817748 63818462 715.0 - 0 ENSG00000232815.1 unprocessed_pseudogene DUX4L50 1 OTTHUMG00000058675.1 pseudo_consens +60424 chr9 ENSEMBL gene 63819574 63819654 81.0 + 0 ENSG00000266017.1 miRNA MIR4477B 3 +60425 chr9 HAVANA gene 63832127 63859641 931.0 - 0 ENSG00000215548.2 unprocessed_pseudogene FRG1JP 2 OTTHUMG00000058676.2 +60426 chr9 HAVANA gene 63974762 64004155 386.0 - 0 ENSG00000204790.9 unprocessed_pseudogene AL163540.1 2 OTTHUMG00000066820.7 +60427 chr9 ENSEMBL gene 64082429 64082534 106.0 + 0 ENSG00000275068.1 snRNA RF00026 3 +60428 chr9 HAVANA gene 64343044 64362584 1535.0 + 0 ENSG00000285580.1 lincRNA CR769776.3 2 OTTHUMG00000193034.1 +60429 chr9 ENSEMBL gene 64380194 64380300 107.0 + 0 ENSG00000238551.1 snRNA RNU6-1193P 3 +60430 chr9 HAVANA gene 64369394 64413142 4510.0 + 0 ENSG00000172014.12 protein_coding ANKRD20A4 2 OTTHUMG00000066855.3 ncRNA_host +60431 chr9 HAVANA gene 64439346 64440180 835.0 + 0 ENSG00000224185.1 processed_pseudogene SNX18P9 1 OTTHUMG00000034632.1 pseudo_consens +60432 chr9 HAVANA gene 64462819 64463196 378.0 + 0 ENSG00000229156.1 processed_pseudogene CR769776.2 2 OTTHUMG00000034633.2 +60433 chr9 HAVANA gene 64465463 64466498 520.0 + 0 ENSG00000224106.1 unprocessed_pseudogene CYP4F25P 2 OTTHUMG00000067335.1 +60434 chr9 HAVANA gene 64473040 64473826 787.0 - 0 ENSG00000224762.1 processed_pseudogene CR769776.1 2 OTTHUMG00000066856.1 +60435 chr9 HAVANA gene 64486164 64487069 906.0 - 0 ENSG00000235832.2 processed_pseudogene CNN2P3 1 OTTHUMG00000013328.2 pseudo_consens +60436 chr9 HAVANA gene 64488600 64489786 1187.0 + 0 ENSG00000235310.1 processed_pseudogene GXYLT1P6 1 OTTHUMG00000013327.2 pseudo_consens +60437 chr9 HAVANA gene 64498517 64498745 229.0 + 0 ENSG00000277869.1 processed_pseudogene AL773524.1 2 OTTHUMG00000187802.1 +60438 chr9 HAVANA gene 64621560 64637586 1041.0 - 0 ENSG00000181997.8 unprocessed_pseudogene AQP7P2 2 OTTHUMG00000013329.2 +60439 chr9 HAVANA gene 64637845 64652556 2662.0 + 0 ENSG00000176134.5 transcribed_unprocessed_pseudogene AL445665.1 2 OTTHUMG00000187218.1 +60440 chr9 HAVANA gene 64705734 64709311 885.0 - 0 ENSG00000225883.2 unprocessed_pseudogene BMS1P11 2 OTTHUMG00000066928.1 +60441 chr9 HAVANA gene 64737403 64737755 353.0 - 0 ENSG00000235932.2 processed_pseudogene AL359955.2 2 OTTHUMG00000067336.2 +60442 chr9 HAVANA gene 64765054 64765535 350.0 - 0 ENSG00000156755.10 IG_V_pseudogene IGKV1OR-2 1 OTTHUMG00000013330.3 pseudo_consens +60443 chr9 HAVANA gene 64810865 64811429 565.0 - 0 ENSG00000271225.1 processed_pseudogene BNIP3P4 1 OTTHUMG00000184631.1 pseudo_consens +60444 chr9 HAVANA gene 64817870 64836341 3275.0 + 0 ENSG00000197550.3 unprocessed_pseudogene AL359955.1 2 OTTHUMG00000013331.1 +60445 chr9 ENSEMBL gene 64880369 64880475 107.0 - 0 ENSG00000206804.1 snRNA RNU6-1293P 3 +60446 chr9 HAVANA gene 64878790 64889063 1403.0 - 0 ENSG00000223602.2 unprocessed_pseudogene AC125634.1 2 OTTHUMG00000066924.1 +60447 chr9 HAVANA gene 65189995 65193610 706.0 - 0 ENSG00000224599.1 unprocessed_pseudogene BMS1P12 2 OTTHUMG00000067343.1 +60448 chr9 HAVANA gene 65222522 65222777 256.0 - 0 ENSG00000267085.1 processed_pseudogene AL512605.2 2 OTTHUMG00000180825.1 overlapping_locus +60449 chr9 HAVANA gene 65219987 65230861 1263.0 - 0 ENSG00000236252.2 transcribed_processed_pseudogene AL512605.1 2 OTTHUMG00000067344.2 overlapping_locus +60450 chr9 HAVANA gene 65250543 65250826 284.0 - 0 ENSG00000204780.5 IG_V_pseudogene IGKV1OR9-1 1 OTTHUMG00000013334.2 pseudo_consens +60451 chr9 HAVANA gene 65282101 65285209 3109.0 - 0 ENSG00000204779.2 protein_coding FOXD4L5 2 OTTHUMG00000013332.1 +60452 chr9 HAVANA gene 65287914 65323015 655.0 - 0 ENSG00000204778.4 unprocessed_pseudogene CBWD4P 2 OTTHUMG00000013333.1 +60453 chr9 ENSEMBL gene 65573384 65573495 112.0 + 0 ENSG00000276723.1 misc_RNA RF00019 3 +60454 chr9 HAVANA gene 65646982 65652679 341.0 - 0 ENSG00000280286.1 unprocessed_pseudogene FRG1KP 2 OTTHUMG00000189283.1 +60455 chr9 HAVANA gene 65668805 65734041 12708.0 + 0 ENSG00000147996.16 protein_coding CBWD5 2 OTTHUMG00000013336.3 +60456 chr9 HAVANA gene 65736555 65738784 2230.0 + 0 ENSG00000184659.5 protein_coding FOXD4L4 2 OTTHUMG00000013337.2 +60457 chr9 HAVANA gene 65770955 65771434 348.0 + 0 ENSG00000204776.6 IG_V_pseudogene IGKV1OR-3 1 OTTHUMG00000013335.4 pseudo_consens +60458 chr9 HAVANA gene 65798726 65799124 399.0 + 0 ENSG00000237904.2 processed_pseudogene BX284632.2 2 OTTHUMG00000067353.2 +60459 chr9 HAVANA gene 65816932 65817472 541.0 - 0 ENSG00000235893.5 processed_pseudogene BX284632.1 2 OTTHUMG00000067355.1 +60460 chr9 HAVANA gene 65828120 65831696 885.0 + 0 ENSG00000231701.1 unprocessed_pseudogene BMS1P13 2 OTTHUMG00000067356.1 +60461 chr9 HAVANA gene 65865190 65877274 920.0 - 0 ENSG00000279955.3 transcribed_unprocessed_pseudogene AC129778.1 2 OTTHUMG00000189281.1 +60462 chr9 HAVANA gene 65878766 65894790 1041.0 + 0 ENSG00000279688.1 unprocessed_pseudogene AQP7P3 2 OTTHUMG00000189282.1 +60463 chr9 HAVANA gene 66017643 66017868 226.0 - 0 ENSG00000273668.1 transcribed_processed_pseudogene AL136317.1 2 OTTHUMG00000188676.1 overlapping_locus +60464 chr9 HAVANA gene 66014525 66020816 2254.0 - 0 ENSG00000274893.1 lincRNA AL136317.2 2 OTTHUMG00000188309.1 overlapping_locus +60465 chr9 HAVANA gene 66022661 66027719 2197.0 - 0 ENSG00000275026.1 transcribed_processed_pseudogene GXYLT1P4 1 OTTHUMG00000188312.1 pseudo_consens,overlapping_locus +60466 chr9 HAVANA gene 66029264 66030169 906.0 + 0 ENSG00000278068.1 processed_pseudogene AL136317.3 1 OTTHUMG00000189068.1 pseudo_consens +60467 chr9 HAVANA gene 66042646 66043342 697.0 + 0 ENSG00000278720.1 processed_pseudogene AL669942.2 2 OTTHUMG00000188368.1 +60468 chr9 HAVANA gene 66047084 66055006 7923.0 - 0 ENSG00000274628.4 processed_transcript AL669942.1 2 OTTHUMG00000188369.1 +60469 chr9 HAVANA gene 66082350 66083187 838.0 - 0 ENSG00000229146.2 processed_pseudogene SNX18P4 1 OTTHUMG00000188430.1 pseudo_consens +60470 chr9 HAVANA gene 66084804 66085031 228.0 + 0 ENSG00000276257.1 processed_pseudogene AL513478.1 2 OTTHUMG00000188431.1 +60471 chr9 ENSEMBL gene 66142221 66142327 107.0 - 0 ENSG00000275030.1 snRNA RNU6-538P 3 +60472 chr9 HAVANA gene 66106815 66153135 7672.0 - 0 ENSG00000276203.4 protein_coding ANKRD20A3 2 OTTHUMG00000188432.1 ncRNA_host +60473 chr9 HAVANA gene 66159954 66179430 1484.0 - 0 ENSG00000278849.1 lincRNA AL513478.2 2 OTTHUMG00000188450.1 +60474 chr9 HAVANA gene 66182326 66188451 1095.0 + 0 ENSG00000284611.1 unprocessed_pseudogene AL513478.3 2 OTTHUMG00000192336.1 +60475 chr9 HAVANA gene 66204896 66208833 310.0 - 0 ENSG00000284658.1 unprocessed_pseudogene AL513478.4 2 OTTHUMG00000192337.1 +60476 chr9 HAVANA gene 66253424 66254464 635.0 - 0 ENSG00000233765.1 unprocessed_pseudogene AL591479.1 2 OTTHUMG00000067362.1 +60477 chr9 HAVANA gene 66635754 66637197 1444.0 + 0 ENSG00000274181.1 processed_pseudogene RBPJP2 1 OTTHUMG00000188564.2 pseudo_consens +60478 chr9 HAVANA gene 66641314 66642277 665.0 - 0 ENSG00000276894.1 processed_pseudogene RAB28P4 1 OTTHUMG00000188565.1 pseudo_consens +60479 chr9 HAVANA gene 66721158 66722760 1603.0 + 0 ENSG00000277297.1 processed_pseudogene ATP5F1AP10 1 OTTHUMG00000188568.2 pseudo_consens +60480 chr9 HAVANA gene 66724584 66725064 481.0 + 0 ENSG00000273849.1 processed_pseudogene SDR42E1P4 1 OTTHUMG00000188567.2 pseudo_consens +60481 chr9 HAVANA gene 66744561 66745929 1369.0 - 0 ENSG00000276457.1 processed_pseudogene FKBP4P8 1 OTTHUMG00000188569.2 pseudo_consens +60482 chr9 HAVANA gene 66879454 66879940 487.0 - 0 ENSG00000277490.1 processed_pseudogene BX664608.1 1 OTTHUMG00000188362.1 pseudo_consens +60483 chr9 HAVANA gene 66856426 66932141 4843.0 + 0 ENSG00000274349.4 protein_coding ZNF658 2 OTTHUMG00000188361.2 +60484 chr9 HAVANA gene 66942703 66952344 1470.0 + 0 ENSG00000277350.1 lincRNA AL353770.4 2 OTTHUMG00000188338.1 +60485 chr9 HAVANA gene 66962271 66962348 78.0 + 0 ENSG00000276039.1 processed_pseudogene AL353770.2 2 OTTHUMG00000188339.1 +60486 chr9 HAVANA gene 66976520 66976991 472.0 - 0 ENSG00000274355.1 transcribed_processed_pseudogene FAM74A3 2 OTTHUMG00000188258.1 overlapping_locus +60487 chr9 HAVANA gene 66979460 66979862 403.0 + 0 ENSG00000274820.1 unprocessed_pseudogene AL353770.1 1 OTTHUMG00000188333.1 pseudo_consens +60488 chr9 HAVANA gene 66979132 66988373 1988.0 + 0 ENSG00000276348.1 lincRNA AL353770.3 2 OTTHUMG00000188259.1 +60489 chr9 HAVANA gene 66986304 66992583 4256.0 - 0 ENSG00000275969.2 protein_coding SPATA31A3 2 OTTHUMG00000188260.2 +60490 chr9 ENSEMBL gene 67175775 67176035 261.0 - 0 ENSG00000274852.1 misc_RNA RN7SL422P 3 +60491 chr9 HAVANA gene 67203635 67208072 944.0 - 0 ENSG00000277575.1 processed_pseudogene AL162233.1 1 OTTHUMG00000188329.1 pseudo_consens +60492 chr9 HAVANA gene 67211663 67213067 1405.0 - 0 ENSG00000273999.1 processed_pseudogene RBM17P2 1 OTTHUMG00000188267.1 pseudo_consens +60493 chr9 HAVANA gene 67059560 67293468 3861.0 + 0 ENSG00000276386.1 unprocessed_pseudogene CNTNAP3P2 1 OTTHUMG00000188266.1 pseudo_consens +60494 chr9 HAVANA gene 67328207 67329404 1198.0 - 0 ENSG00000276204.1 processed_pseudogene BX005195.1 2 OTTHUMG00000188268.1 +60495 chr9 HAVANA gene 67512034 67515393 800.0 - 0 ENSG00000276898.1 lincRNA BX664730.1 2 OTTHUMG00000188580.2 +60496 chr9 ENSEMBL gene 67697076 67697187 112.0 + 0 ENSG00000275904.1 misc_RNA RF00019 3 +60497 chr9 HAVANA gene 67713910 67713967 58.0 + 0 ENSG00000277208.1 unprocessed_pseudogene AL627230.5 2 OTTHUMG00000188844.2 +60498 chr9 HAVANA gene 67714723 67714914 192.0 + 0 ENSG00000275614.1 unprocessed_pseudogene AL627230.3 2 OTTHUMG00000188872.1 +60499 chr9 HAVANA gene 67718821 67719022 202.0 + 0 ENSG00000278735.1 unprocessed_pseudogene AL627230.8 2 OTTHUMG00000188583.1 +60500 chr9 HAVANA gene 67717411 67719178 1593.0 - 0 ENSG00000274026.1 transcribed_processed_pseudogene FAM27E3 2 OTTHUMG00000188582.3 +60501 chr9 HAVANA gene 67721884 67722094 211.0 - 0 ENSG00000274100.1 unprocessed_pseudogene AL627230.1 2 OTTHUMG00000188873.1 +60502 chr9 HAVANA gene 67722083 67722683 601.0 + 0 ENSG00000278134.1 unprocessed_pseudogene AL627230.7 2 OTTHUMG00000188584.2 +60503 chr9 HAVANA gene 67723736 67724105 370.0 + 0 ENSG00000276032.1 unprocessed_pseudogene AL627230.4 2 OTTHUMG00000188585.2 +60504 chr9 HAVANA gene 67725690 67725902 213.0 - 0 ENSG00000278763.1 processed_pseudogene FAM27B 2 OTTHUMG00000188586.2 +60505 chr9 HAVANA gene 67725890 67726544 655.0 + 0 ENSG00000274911.1 unprocessed_pseudogene AL627230.2 2 OTTHUMG00000188587.2 +60506 chr9 ENSEMBL gene 67791499 67791782 284.0 - 0 ENSG00000274098.1 misc_RNA RN7SL787P 3 +60507 chr9 ENSEMBL gene 67797087 67797181 95.0 + 0 ENSG00000278010.1 snoRNA RF00156 3 +60508 chr9 HAVANA gene 67797221 67797500 280.0 + 0 ENSG00000277618.1 processed_pseudogene AL627230.6 2 OTTHUMG00000188588.2 +60509 chr9 ENSEMBL gene 67869947 67870053 107.0 + 0 ENSG00000278551.1 snRNA RNU6-368P 3 +60510 chr9 HAVANA gene 67859147 67902094 3887.0 + 0 ENSG00000260691.5 protein_coding ANKRD20A1 2 OTTHUMG00000188594.3 ncRNA_host,overlapping_locus +60511 chr9 HAVANA gene 67901099 67920552 1134.0 + 0 ENSG00000284737.1 transcribed_unprocessed_pseudogene BX649567.1 2 OTTHUMG00000188593.6 overlapping_locus +60512 chr9 HAVANA gene 68228651 68229312 340.0 + 0 ENSG00000226904.1 antisense AL353608.2 2 OTTHUMG00000019963.1 +60513 chr9 HAVANA gene 68250469 68251656 1188.0 - 0 ENSG00000279706.1 TEC AL353608.4 2 OTTHUMG00000187221.1 +60514 chr9 HAVANA gene 68232003 68300015 12319.0 + 0 ENSG00000196873.15 protein_coding CBWD3 2 OTTHUMG00000184383.3 +60515 chr9 HAVANA gene 68302867 68304905 2039.0 + 0 ENSG00000187559.5 protein_coding FOXD4L3 2 OTTHUMG00000019959.2 +60516 chr9 HAVANA gene 68307393 68308445 416.0 + 0 ENSG00000225337.1 lincRNA AL353608.1 2 OTTHUMG00000019960.1 overlapping_locus +60517 chr9 HAVANA gene 68306528 68330626 5282.0 + 0 ENSG00000234394.8 lincRNA AL353608.3 2 OTTHUMG00000019961.4 overlapping_locus +60518 chr9 HAVANA gene 68355189 68357852 604.0 - 0 ENSG00000224958.5 antisense PGM5-AS1 1 OTTHUMG00000019962.1 +60519 chr9 HAVANA gene 68393881 68406500 4007.0 - 0 ENSG00000233178.7 antisense AL161457.2 2 OTTHUMG00000019964.4 +60520 chr9 HAVANA gene 68426843 68429369 905.0 + 0 ENSG00000229019.1 sense_intronic AL161457.1 1 OTTHUMG00000019965.1 overlapping_locus +60521 chr9 HAVANA gene 68328308 68531061 7426.0 + 0 ENSG00000154330.12 protein_coding PGM5 1 OTTHUMG00000019966.4 overlapping_locus +60522 chr9 HAVANA gene 68536580 68540867 1245.0 - 0 ENSG00000181778.4 protein_coding TMEM252 2 OTTHUMG00000019967.1 +60523 chr9 HAVANA gene 68543541 68546589 526.0 - 0 ENSG00000234506.5 lincRNA LINC01506 2 OTTHUMG00000019968.1 +60524 chr9 HAVANA gene 68609125 68611984 2860.0 + 0 ENSG00000224025.2 processed_pseudogene AL353616.1 1 OTTHUMG00000019969.2 pseudo_consens,overlapping_locus +60525 chr9 HAVANA gene 68541036 68644442 1739.0 + 0 ENSG00000226337.3 lincRNA AL353616.2 2 OTTHUMG00000019970.2 overlapping_locus +60526 chr9 HAVANA gene 68780034 68784608 4575.0 + 0 ENSG00000187866.8 protein_coding FAM122A 2 OTTHUMG00000019971.2 overlapping_locus +60527 chr9 HAVANA gene 68788307 68789670 1248.0 - 0 ENSG00000236998.2 processed_pseudogene AL354794.2 1 OTTHUMG00000019972.2 pseudo_consens +60528 chr9 HAVANA gene 68822403 68843275 516.0 - 0 ENSG00000236733.1 antisense AL354794.1 1 OTTHUMG00000019973.1 +60529 chr9 ENSEMBL gene 68935873 68935979 107.0 - 0 ENSG00000207000.1 snRNA RNU6-820P 3 +60530 chr9 HAVANA gene 68705414 69009176 4918.0 + 0 ENSG00000107242.17 protein_coding PIP5K1B 2 OTTHUMG00000019976.5 overlapping_locus +60531 chr9 HAVANA gene 69012529 69014113 1585.0 - 0 ENSG00000165059.7 protein_coding PRKACG 2 OTTHUMG00000019974.2 retrogene +60532 chr9 HAVANA gene 69107926 69108217 292.0 - 0 ENSG00000270236.1 processed_pseudogene AL162730.1 1 OTTHUMG00000184634.1 pseudo_consens +60533 chr9 HAVANA gene 69035259 69120427 9606.0 + 0 ENSG00000165060.12 protein_coding FXN 2 OTTHUMG00000019977.11 +60534 chr9 HAVANA gene 69035750 69255187 7136.0 + 0 ENSG00000285130.1 protein_coding AL358113.1 2 OTTHUMG00000192581.7 overlapping_locus +60535 chr9 HAVANA gene 69121264 69274615 15465.0 + 0 ENSG00000119139.19 protein_coding TJP2 2 OTTHUMG00000019978.17 +60536 chr9 HAVANA gene 69296682 69311111 848.0 - 0 ENSG00000278910.4 lincRNA BANCR 2 OTTHUMG00000189430.2 +60537 chr9 HAVANA gene 69324567 69392558 9552.0 + 0 ENSG00000135063.19 protein_coding FAM189A2 2 OTTHUMG00000019979.4 +60538 chr9 HAVANA gene 69428248 69428721 398.0 - 0 ENSG00000243888.1 3prime_overlapping_ncRNA AL355140.1 2 OTTHUMG00000019980.1 overlapping_locus +60539 chr9 HAVANA gene 69472466 69494513 442.0 + 0 ENSG00000229312.2 antisense AL353693.1 2 OTTHUMG00000019981.2 +60540 chr9 HAVANA gene 69427530 69672306 11384.0 - 0 ENSG00000107282.7 protein_coding APBA1 2 OTTHUMG00000019984.4 overlapping_locus +60541 chr9 HAVANA gene 69672749 69673713 965.0 + 0 ENSG00000261447.1 lincRNA AL162412.1 2 OTTHUMG00000175664.1 +60542 chr9 HAVANA gene 69709522 69759959 12200.0 - 0 ENSG00000188647.12 protein_coding PTAR1 1 OTTHUMG00000019982.4 +60543 chr9 HAVANA gene 69818983 69820739 1472.0 - 0 ENSG00000225626.2 lincRNA C9orf135-DT 1 OTTHUMG00000019983.2 +60544 chr9 ENSEMBL gene 69884363 69884654 292.0 - 0 ENSG00000241174.3 misc_RNA RN7SL570P 3 +60545 chr9 HAVANA gene 69820793 69906232 1279.0 + 0 ENSG00000204711.8 protein_coding C9orf135 1 OTTHUMG00000019985.2 +60546 chr9 HAVANA gene 70033921 70175888 9862.0 - 0 ENSG00000204706.14 antisense MAMDC2-AS1 1 OTTHUMG00000019986.7 +60547 chr9 ENSEMBL gene 70188571 70188750 180.0 - 0 ENSG00000222465.1 snRNA RNU2-5P 3 +60548 chr9 HAVANA gene 70217195 70217668 474.0 + 0 ENSG00000236801.1 processed_pseudogene RPL24P8 1 OTTHUMG00000019989.1 pseudo_consens,overlapping_locus +60549 chr9 HAVANA gene 70043581 70226970 3854.0 + 0 ENSG00000165072.9 protein_coding MAMDC2 2 OTTHUMG00000019990.1 overlapping_locus +60550 chr9 HAVANA gene 70193997 70258866 1818.0 - 0 ENSG00000268364.1 antisense SMC5-AS1 2 OTTHUMG00000182521.1 +60551 chr9 ENSEMBL gene 70311607 70311701 95.0 - 0 ENSG00000239180.1 misc_RNA RF00019 3 +60552 chr9 HAVANA gene 70310875 70312120 1246.0 + 0 ENSG00000274421.1 sense_intronic AL162390.1 2 OTTHUMG00000188620.1 overlapping_locus +60553 chr9 HAVANA gene 70258962 70354888 6637.0 + 0 ENSG00000198887.8 protein_coding SMC5 2 OTTHUMG00000019992.2 overlapping_locus +60554 chr9 HAVANA gene 70384597 70414624 5175.0 - 0 ENSG00000119138.4 protein_coding KLF9 2 OTTHUMG00000019991.2 +60555 chr9 ENSEMBL gene 70579163 70579461 299.0 - 0 ENSG00000272232.2 misc_RNA RN7SL726P 3 +60556 chr9 HAVANA gene 70708047 70712863 337.0 + 0 ENSG00000232086.1 antisense AL159990.2 2 OTTHUMG00000019994.1 +60557 chr9 HAVANA gene 70726040 70730856 337.0 + 0 ENSG00000223966.1 antisense AL159990.1 2 OTTHUMG00000019995.1 +60558 chr9 ENSEMBL gene 70809975 70810084 110.0 - 0 ENSG00000207935.3 miRNA MIR204 3 +60559 chr9 HAVANA gene 70916997 70917501 505.0 - 0 ENSG00000224437.2 processed_pseudogene PIGUP1 1 OTTHUMG00000019996.2 pseudo_consens,overlapping_locus +60560 chr9 HAVANA gene 70529063 71446904 19912.0 - 0 ENSG00000083067.22 protein_coding TRPM3 1 OTTHUMG00000019997.11 ncRNA_host,overlapping_locus +60561 chr9 HAVANA gene 71589601 71589933 333.0 + 0 ENSG00000229814.1 processed_pseudogene RPL35AP21 1 OTTHUMG00000019999.2 pseudo_consens +60562 chr9 HAVANA gene 71804283 71804826 544.0 + 0 ENSG00000271166.1 processed_pseudogene AL671309.1 1 OTTHUMG00000184696.1 pseudo_consens +60563 chr9 HAVANA gene 71683366 71816690 9625.0 - 0 ENSG00000135048.13 protein_coding CEMIP2 1 OTTHUMG00000020000.4 +60564 chr9 ENSEMBL gene 71902455 71902550 96.0 - 0 ENSG00000200922.1 misc_RNA RF00019 3 +60565 chr9 HAVANA gene 71862452 71910931 2959.0 - 0 ENSG00000107362.13 protein_coding ABHD17B 2 OTTHUMG00000020001.1 ncRNA_host +60566 chr9 HAVANA gene 71911510 71986054 4973.0 + 0 ENSG00000155621.14 protein_coding C9orf85 2 OTTHUMG00000020002.6 +60567 chr9 HAVANA gene 72007881 72008136 256.0 - 0 ENSG00000236060.2 processed_pseudogene HSPB1P1 1 OTTHUMG00000153719.1 pseudo_consens +60568 chr9 HAVANA gene 72051376 72072721 1563.0 - 0 ENSG00000204669.9 protein_coding C9orf57 2 OTTHUMG00000020003.1 +60569 chr9 HAVANA gene 72107818 72108312 495.0 - 0 ENSG00000224820.2 processed_pseudogene BTF3P4 1 OTTHUMG00000020004.2 pseudo_consens +60570 chr9 HAVANA gene 72114595 72257193 7904.0 + 0 ENSG00000119125.16 protein_coding GDA 2 OTTHUMG00000020005.4 +60571 chr9 HAVANA gene 72257336 72257783 361.0 + 0 ENSG00000235523.1 lincRNA AL135924.2 2 OTTHUMG00000020009.1 +60572 chr9 HAVANA gene 72275453 72275973 423.0 + 0 ENSG00000233933.2 processed_pseudogene AL135924.1 1 OTTHUMG00000020006.2 pseudo_consens +60573 chr9 ENSEMBL gene 72299720 72299838 119.0 - 0 ENSG00000252428.1 rRNA_pseudogene RNA5SP285 3 +60574 chr9 HAVANA gene 72305430 72343210 2458.0 + 0 ENSG00000225434.2 lincRNA LINC01504 2 OTTHUMG00000020007.2 +60575 chr9 HAVANA gene 72351425 72365235 7053.0 - 0 ENSG00000107372.12 protein_coding ZFAND5 2 OTTHUMG00000020008.4 +60576 chr9 HAVANA gene 72445754 72445969 216.0 - 0 ENSG00000230003.2 processed_pseudogene AL445646.1 2 OTTHUMG00000020010.2 +60577 chr9 HAVANA gene 72470374 72471076 392.0 + 0 ENSG00000225947.1 processed_pseudogene AL596448.1 1 OTTHUMG00000020011.1 pseudo_consens +60578 chr9 HAVANA gene 72655832 72656192 361.0 - 0 ENSG00000236862.1 processed_pseudogene RPS20P24 1 OTTHUMG00000020012.1 pseudo_consens +60579 chr9 HAVANA gene 72741152 72741617 466.0 - 0 ENSG00000229753.1 processed_pseudogene RPS27AP15 1 OTTHUMG00000020013.2 pseudo_consens +60580 chr9 HAVANA gene 72521608 72838230 7004.0 + 0 ENSG00000165091.16 protein_coding TMC1 2 OTTHUMG00000020014.3 +60581 chr9 HAVANA gene 72871728 72874109 639.0 - 0 ENSG00000236849.5 lincRNA LINC01474 2 OTTHUMG00000020015.1 +60582 chr9 HAVANA gene 73042745 73056528 1433.0 + 0 ENSG00000228024.1 unprocessed_pseudogene CYP1D1P 2 OTTHUMG00000020017.1 +60583 chr9 HAVANA gene 72900662 73080442 2849.0 - 0 ENSG00000165092.12 protein_coding ALDH1A1 2 OTTHUMG00000020019.2 +60584 chr9 HAVANA gene 73151757 73170393 4561.0 + 0 ENSG00000135046.13 protein_coding ANXA1 2 OTTHUMG00000020016.2 +60585 chr9 HAVANA gene 73474378 73476073 1696.0 - 0 ENSG00000221844.2 processed_pseudogene DPP3P2 1 OTTHUMG00000020020.3 pseudo_consens +60586 chr9 HAVANA gene 73573615 73579498 624.0 + 0 ENSG00000232590.1 lincRNA AL451127.1 1 OTTHUMG00000020021.1 +60587 chr9 HAVANA gene 73648828 73649839 1012.0 + 0 ENSG00000236701.3 processed_pseudogene AL512594.1 1 OTTHUMG00000020022.2 pseudo_consens +60588 chr9 ENSEMBL gene 73750972 73751077 106.0 - 0 ENSG00000212454.1 rRNA_pseudogene RNA5SP286 3 +60589 chr9 HAVANA gene 73870896 73873297 614.0 - 0 ENSG00000223368.2 processed_pseudogene AL513124.1 1 OTTHUMG00000020023.2 pseudo_consens +60590 chr9 HAVANA gene 74371531 74383530 648.0 + 0 ENSG00000227809.1 lincRNA AL355674.1 1 OTTHUMG00000020024.1 +60591 chr9 HAVANA gene 74485551 74499127 1178.0 - 0 ENSG00000224825.2 antisense RORB-AS1 1 OTTHUMG00000020025.2 +60592 chr9 HAVANA gene 74497365 74693177 9591.0 + 0 ENSG00000198963.10 protein_coding RORB 2 OTTHUMG00000020026.2 +60593 chr9 ENSEMBL gene 74799895 74800222 328.0 + 0 ENSG00000202217.1 misc_RNA RN7SKP47 3 +60594 chr9 HAVANA gene 74804473 74804773 301.0 + 0 ENSG00000270954.1 processed_pseudogene RPSAP75 1 OTTHUMG00000184697.1 pseudo_consens +60595 chr9 ENSEMBL gene 74857675 74857781 107.0 + 0 ENSG00000252758.1 snRNA RNU6-445P 3 +60596 chr9 HAVANA gene 74722495 74888094 9193.0 - 0 ENSG00000119121.21 protein_coding TRPM6 2 OTTHUMG00000020027.2 +60597 chr9 HAVANA gene 74935176 74935696 521.0 + 0 ENSG00000224297.2 processed_pseudogene AL158825.1 1 OTTHUMG00000020028.2 pseudo_consens +60598 chr9 HAVANA gene 74946581 74952886 2327.0 - 0 ENSG00000135045.6 protein_coding C9orf40 2 OTTHUMG00000020031.1 +60599 chr9 HAVANA gene 74952968 74996293 719.0 + 0 ENSG00000203321.2 antisense C9orf41-AS1 2 OTTHUMG00000020029.1 +60600 chr9 HAVANA gene 75009828 75016036 670.0 - 0 ENSG00000229587.2 sense_intronic AL158825.2 1 OTTHUMG00000020030.2 overlapping_locus +60601 chr9 ENSEMBL gene 75016681 75016848 168.0 - 0 ENSG00000278040.1 misc_RNA RF02271 3 +60602 chr9 HAVANA gene 74981020 75028423 4610.0 - 0 ENSG00000156017.12 protein_coding CARNMT1 2 OTTHUMG00000020032.3 ncRNA_host,overlapping_locus +60603 chr9 HAVANA gene 75060573 75088217 3865.0 - 0 ENSG00000106733.20 protein_coding NMRK1 2 OTTHUMG00000020034.3 +60604 chr9 HAVANA gene 75088543 75147265 1319.0 + 0 ENSG00000134996.11 protein_coding OSTF1 2 OTTHUMG00000020033.1 +60605 chr9 ENSEMBL gene 75181520 75181621 102.0 - 0 ENSG00000200041.1 misc_RNA RF00019 3 +60606 chr9 ENSEMBL gene 75198071 75198177 107.0 + 0 ENSG00000212316.1 snRNA RNU6-1228P 3 +60607 chr9 HAVANA gene 75401889 75402992 1104.0 - 0 ENSG00000235707.2 processed_pseudogene AL158073.1 1 OTTHUMG00000020035.2 pseudo_consens +60608 chr9 HAVANA gene 75579669 75588548 458.0 + 0 ENSG00000236376.1 lincRNA AL353780.1 1 OTTHUMG00000020036.1 +60609 chr9 HAVANA gene 75724222 75724575 354.0 - 0 ENSG00000234644.2 processed_pseudogene OTX2P1 1 OTTHUMG00000020037.2 pseudo_consens +60610 chr9 HAVANA gene 76286494 76288081 1277.0 - 0 ENSG00000231137.1 processed_pseudogene RBM22P5 2 OTTHUMG00000020038.2 +60611 chr9 HAVANA gene 75890644 76362339 12705.0 + 0 ENSG00000099139.13 protein_coding PCSK5 1 OTTHUMG00000020039.2 +60612 chr9 HAVANA gene 76385517 76394517 3877.0 - 0 ENSG00000135002.11 protein_coding RFK 2 OTTHUMG00000020040.2 +60613 chr9 HAVANA gene 76398699 76399586 888.0 + 0 ENSG00000234618.1 processed_pseudogene RPSAP9 1 OTTHUMG00000020041.1 pseudo_consens +60614 chr9 HAVANA gene 76419934 76420631 339.0 + 0 ENSG00000233814.1 processed_pseudogene AL590664.1 1 OTTHUMG00000020042.1 pseudo_consens,overlapping_locus +60615 chr9 HAVANA gene 76549282 76549771 490.0 - 0 ENSG00000219149.4 processed_pseudogene PPIAP87 1 OTTHUMG00000020043.2 pseudo_consens +60616 chr9 HAVANA gene 76419850 76651203 9251.0 + 0 ENSG00000187210.13 protein_coding GCNT1 2 OTTHUMG00000020044.2 overlapping_locus +60617 chr9 ENSEMBL gene 76779657 76779917 261.0 + 0 ENSG00000274326.1 misc_RNA AL359314.1 3 +60618 chr9 ENSEMBL gene 76785782 76786190 409.0 + 0 ENSG00000277320.1 misc_RNA RF01894 3 +60619 chr9 HAVANA gene 76691980 76863307 14174.0 + 0 ENSG00000225937.2 antisense PCA3 2 OTTHUMG00000020046.2 ncRNA_host +60620 chr9 HAVANA gene 76611376 76906087 14656.0 - 0 ENSG00000106772.17 protein_coding PRUNE2 2 OTTHUMG00000020047.4 +60621 chr9 HAVANA gene 76931261 76932066 806.0 - 0 ENSG00000230335.1 processed_pseudogene DNAJB5P1 2 OTTHUMG00000020048.1 +60622 chr9 HAVANA gene 76970322 76971028 576.0 + 0 ENSG00000236604.1 processed_pseudogene LYPLA2P3 1 OTTHUMG00000020049.1 pseudo_consens +60623 chr9 HAVANA gene 76992099 76993108 732.0 + 0 ENSG00000229857.1 processed_pseudogene AL353637.1 1 OTTHUMG00000020050.1 pseudo_consens +60624 chr9 HAVANA gene 77019655 77020953 1299.0 + 0 ENSG00000204612.1 protein_coding FOXB2 2 OTTHUMG00000020051.2 +60625 chr9 HAVANA gene 77040416 77040673 258.0 + 0 ENSG00000232851.3 processed_pseudogene ATP5MFP3 1 OTTHUMG00000020052.2 pseudo_consens +60626 chr9 HAVANA gene 77072100 77073295 874.0 + 0 ENSG00000233526.1 processed_pseudogene RFC5P1 1 OTTHUMG00000020053.2 pseudo_consens +60627 chr9 HAVANA gene 77176760 77178180 701.0 - 0 ENSG00000232998.2 antisense VPS13A-AS1 1 OTTHUMG00000020054.2 +60628 chr9 HAVANA gene 77177353 77421541 20196.0 + 0 ENSG00000197969.12 protein_coding VPS13A 1 OTTHUMG00000020055.9 +60629 chr9 HAVANA gene 77456295 77526697 605.0 + 0 ENSG00000231373.1 antisense GNA14-AS1 2 OTTHUMG00000020056.1 +60630 chr9 HAVANA gene 77580245 77580628 384.0 + 0 ENSG00000228248.1 processed_pseudogene NUTF2P3 1 OTTHUMG00000020057.2 pseudo_consens +60631 chr9 ENSEMBL gene 77635203 77635309 107.0 - 0 ENSG00000201711.1 snRNA RNU6-1303P 3 +60632 chr9 HAVANA gene 77423079 77648307 2721.0 - 0 ENSG00000156049.6 protein_coding GNA14 2 OTTHUMG00000020058.1 ncRNA_host +60633 chr9 HAVANA gene 77716087 78031458 6629.0 - 0 ENSG00000156052.10 protein_coding GNAQ 2 OTTHUMG00000020059.2 +60634 chr9 HAVANA gene 78150532 78151193 662.0 - 0 ENSG00000233457.1 processed_pseudogene AL353705.2 1 OTTHUMG00000020063.1 pseudo_consens +60635 chr9 ENSEMBL gene 78165465 78165778 314.0 + 0 ENSG00000222452.1 misc_RNA RN7SKP59 3 +60636 chr9 HAVANA gene 78178263 78179512 1250.0 + 0 ENSG00000233947.1 processed_pseudogene AL353705.3 1 OTTHUMG00000020064.1 pseudo_consens +60637 chr9 HAVANA gene 78180214 78180693 480.0 - 0 ENSG00000228781.1 processed_pseudogene AL353705.1 1 OTTHUMG00000020065.1 pseudo_consens +60638 chr9 HAVANA gene 78219120 78219357 238.0 + 0 ENSG00000234819.1 processed_pseudogene AL353705.4 1 OTTHUMG00000020061.1 pseudo_consens +60639 chr9 HAVANA gene 78236062 78279690 14355.0 + 0 ENSG00000148019.13 protein_coding CEP78 2 OTTHUMG00000020062.14 +60640 chr9 HAVANA gene 78297143 78330093 2188.0 + 0 ENSG00000135069.13 protein_coding PSAT1 2 OTTHUMG00000020066.1 +60641 chr9 HAVANA gene 78589158 78589539 382.0 + 0 ENSG00000270627.1 processed_pseudogene AL592221.1 1 OTTHUMG00000184700.1 pseudo_consens +60642 chr9 HAVANA gene 78741720 78742744 1025.0 - 0 ENSG00000237257.1 unprocessed_pseudogene MTND2P8 2 OTTHUMG00000020067.1 +60643 chr9 HAVANA gene 79036413 79037568 1156.0 - 0 ENSG00000226234.2 processed_pseudogene KRT18P24 1 OTTHUMG00000020068.1 pseudo_consens +60644 chr9 HAVANA gene 79135422 79198314 2835.0 - 0 ENSG00000260995.2 lincRNA AL512634.1 2 OTTHUMG00000175501.2 +60645 chr9 HAVANA gene 79391304 79391759 456.0 + 0 ENSG00000186940.6 processed_pseudogene CHCHD2P9 1 OTTHUMG00000020069.2 pseudo_consens +60646 chr9 HAVANA gene 79505804 79532342 3830.0 - 0 ENSG00000233086.7 lincRNA LNCARSR 1 OTTHUMG00000020070.4 +60647 chr9 HAVANA gene 79726069 79726321 253.0 + 0 ENSG00000240979.1 processed_pseudogene AL353813.1 2 OTTHUMG00000020071.1 +60648 chr9 HAVANA gene 79571773 79726882 8187.0 + 0 ENSG00000106829.18 protein_coding TLE4 1 OTTHUMG00000020072.9 +60649 chr9 HAVANA gene 79850871 79851498 628.0 + 0 ENSG00000270691.1 processed_pseudogene AL161912.3 1 OTTHUMG00000184701.2 pseudo_consens +60650 chr9 HAVANA gene 79863019 79866875 3484.0 + 0 ENSG00000238002.3 processed_pseudogene NPAP1P6 2 OTTHUMG00000020073.3 +60651 chr9 HAVANA gene 79874696 79886678 524.0 - 0 ENSG00000232494.1 lincRNA AL161912.1 1 OTTHUMG00000020074.1 +60652 chr9 HAVANA gene 79889001 79892007 3007.0 + 0 ENSG00000260564.1 lincRNA AL161912.2 2 OTTHUMG00000175493.1 +60653 chr9 HAVANA gene 79913269 79915736 2468.0 + 0 ENSG00000279715.1 TEC AL161912.4 2 OTTHUMG00000175785.1 +60654 chr9 HAVANA gene 79975023 79990064 586.0 + 0 ENSG00000280366.1 lincRNA AL161782.1 2 OTTHUMG00000189229.1 +60655 chr9 HAVANA gene 80030579 80034555 446.0 + 0 ENSG00000230945.1 lincRNA LINC01507 1 OTTHUMG00000020075.1 +60656 chr9 HAVANA gene 80357029 80360338 3310.0 - 0 ENSG00000236521.1 processed_pseudogene NPAP1P4 2 OTTHUMG00000020076.1 +60657 chr9 HAVANA gene 80563571 80564630 1060.0 - 0 ENSG00000232981.1 unprocessed_pseudogene MTCO1P51 2 OTTHUMG00000020078.1 +60658 chr9 HAVANA gene 80565032 80565962 931.0 - 0 ENSG00000225901.1 unprocessed_pseudogene MTND2P9 2 OTTHUMG00000020077.1 +60659 chr9 HAVANA gene 80782338 80782770 433.0 - 0 ENSG00000234637.1 processed_pseudogene RPS19P6 1 OTTHUMG00000020079.2 pseudo_consens +60660 chr9 HAVANA gene 80869758 80871295 791.0 - 0 ENSG00000226798.1 lincRNA AL138749.1 2 OTTHUMG00000020080.1 +60661 chr9 HAVANA gene 81410279 81410630 352.0 + 0 ENSG00000228375.1 processed_pseudogene RPS20P25 1 OTTHUMG00000020081.1 pseudo_consens +60662 chr9 HAVANA gene 81488308 81488837 530.0 + 0 ENSG00000237072.1 processed_pseudogene AL161727.1 1 OTTHUMG00000020082.1 pseudo_consens +60663 chr9 HAVANA gene 81583683 81689305 4906.0 - 0 ENSG00000196781.14 protein_coding TLE1 2 OTTHUMG00000021008.2 +60664 chr9 ENSEMBL gene 81725243 81725349 107.0 - 0 ENSG00000207206.1 snRNA RNU6-1035P 3 +60665 chr9 HAVANA gene 81689713 81776900 1885.0 + 0 ENSG00000233926.1 lincRNA AL591368.1 2 OTTHUMG00000020083.1 +60666 chr9 ENSEMBL gene 81885496 81885598 103.0 + 0 ENSG00000252167.1 rRNA_pseudogene RNA5SP287 3 +60667 chr9 ENSEMBL gene 81888918 81888985 68.0 + 0 ENSG00000200969.1 snoRNA RF00189 3 +60668 chr9 HAVANA gene 81913437 81919926 4863.0 + 0 ENSG00000240632.6 transcribed_unprocessed_pseudogene SPATA31D5P 1 OTTHUMG00000020087.2 pseudo_consens +60669 chr9 HAVANA gene 81928021 81931368 465.0 - 0 ENSG00000230846.1 lincRNA AL158154.1 2 OTTHUMG00000020086.1 overlapping_locus +60670 chr9 HAVANA gene 81928514 81934948 4787.0 + 0 ENSG00000189357.8 protein_coding SPATA31D4 2 OTTHUMG00000020088.3 +60671 chr9 HAVANA gene 81943586 81950038 4785.0 + 0 ENSG00000186788.13 protein_coding SPATA31D3 2 OTTHUMG00000020084.3 +60672 chr9 HAVANA gene 81966564 81972130 4388.0 + 0 ENSG00000237770.2 unprocessed_pseudogene SPATA31D2P 2 OTTHUMG00000020089.2 +60673 chr9 HAVANA gene 81930226 81977089 2208.0 - 0 ENSG00000267559.5 lincRNA AL158154.2 2 OTTHUMG00000180903.1 overlapping_locus +60674 chr9 HAVANA gene 81988772 81995256 5158.0 + 0 ENSG00000214929.3 protein_coding SPATA31D1 2 OTTHUMG00000169122.2 +60675 chr9 HAVANA gene 82057647 82063682 4016.0 - 0 ENSG00000231649.3 unprocessed_pseudogene SPATA31B1P 1 OTTHUMG00000020090.2 pseudo_consens +60676 chr9 HAVANA gene 82086155 82088768 2614.0 - 0 ENSG00000230360.1 processed_pseudogene DDX10P2 1 OTTHUMG00000020092.1 pseudo_consens +60677 chr9 HAVANA gene 82130752 82131632 881.0 + 0 ENSG00000235377.1 processed_pseudogene AL158047.1 1 OTTHUMG00000020093.2 pseudo_consens +60678 chr9 HAVANA gene 82405188 82406239 455.0 + 0 ENSG00000225085.1 lincRNA AL162726.1 1 OTTHUMG00000020094.1 overlapping_locus +60679 chr9 HAVANA gene 82427350 82428025 676.0 - 0 ENSG00000228046.2 processed_pseudogene MTCO3P40 2 OTTHUMG00000020095.2 +60680 chr9 HAVANA gene 82431889 82432905 1017.0 - 0 ENSG00000228123.4 processed_pseudogene AL162726.2 2 OTTHUMG00000020096.3 +60681 chr9 HAVANA gene 82451656 82455225 673.0 + 0 ENSG00000232749.2 lincRNA AL162726.4 1 OTTHUMG00000020097.2 overlapping_locus +60682 chr9 HAVANA gene 82543718 82544196 479.0 + 0 ENSG00000278988.1 TEC AL356490.1 2 OTTHUMG00000175665.1 overlapping_locus +60683 chr9 HAVANA gene 82744067 82744792 726.0 - 0 ENSG00000233309.1 processed_pseudogene RPS6P12 1 OTTHUMG00000020099.1 pseudo_consens +60684 chr9 HAVANA gene 81977614 82780194 4429.0 + 0 ENSG00000228430.9 transcribed_unprocessed_pseudogene AL162726.3 2 OTTHUMG00000020098.5 overlapping_locus +60685 chr9 HAVANA gene 82979585 83063177 6649.0 - 0 ENSG00000165105.9 protein_coding RASEF 2 OTTHUMG00000020100.1 +60686 chr9 ENSEMBL gene 83200940 83201228 289.0 - 0 ENSG00000251776.1 misc_RNA RN7SKP242 3 +60687 chr9 HAVANA gene 83201957 83202065 109.0 + 0 ENSG00000273806.1 processed_pseudogene AL137847.3 2 OTTHUMG00000187813.1 +60688 chr9 HAVANA gene 83219331 83234242 444.0 + 0 ENSG00000229109.1 antisense AL137847.1 2 OTTHUMG00000020101.1 +60689 chr9 ENSEMBL gene 83275941 83276114 174.0 + 0 ENSG00000251752.1 snRNA RNU4-29P 3 +60690 chr9 HAVANA gene 83272280 83279499 1514.0 + 0 ENSG00000237529.2 antisense AL137847.2 1 OTTHUMG00000020102.2 ncRNA_host +60691 chr9 HAVANA gene 83242990 83538546 6486.0 - 0 ENSG00000172159.15 protein_coding FRMD3 2 OTTHUMG00000020103.3 +60692 chr9 ENSEMBL gene 83596444 83596584 141.0 - 0 ENSG00000199483.1 snRNA RNU4-15P 3 +60693 chr9 HAVANA gene 83623049 83644130 1814.0 + 0 ENSG00000148057.15 protein_coding IDNK 1 OTTHUMG00000020105.6 +60694 chr9 HAVANA gene 83659963 83708203 7117.0 - 0 ENSG00000135018.13 protein_coding UBQLN1 1 OTTHUMG00000020104.3 +60695 chr9 HAVANA gene 83707594 83713378 1134.0 + 0 ENSG00000254473.1 antisense AL354920.1 1 OTTHUMG00000166241.2 +60696 chr9 HAVANA gene 83739421 83829516 3381.0 - 0 ENSG00000165113.12 protein_coding GKAP1 2 OTTHUMG00000020106.3 +60697 chr9 HAVANA gene 83817643 83837861 1413.0 + 0 ENSG00000226877.8 antisense AL354733.1 2 OTTHUMG00000020108.3 overlapping_locus +60698 chr9 HAVANA gene 83831586 83868532 3790.0 + 0 ENSG00000231616.8 antisense AL354733.2 2 OTTHUMG00000020110.8 overlapping_locus +60699 chr9 HAVANA gene 83836698 83921465 5140.0 - 0 ENSG00000165115.14 protein_coding KIF27 2 OTTHUMG00000020109.3 +60700 chr9 HAVANA gene 83938311 83956986 2729.0 - 0 ENSG00000165118.14 protein_coding C9orf64 2 OTTHUMG00000020111.2 +60701 chr9 ENSEMBL gene 83969748 83969857 110.0 - 0 ENSG00000284179.1 miRNA MIR7-1 3 +60702 chr9 HAVANA gene 83972233 83975777 390.0 + 0 ENSG00000235298.1 antisense AL354733.3 2 OTTHUMG00000020112.1 +60703 chr9 HAVANA gene 83968083 83980616 5114.0 - 0 ENSG00000165119.20 protein_coding HNRNPK 2 OTTHUMG00000020107.4 ncRNA_host +60704 chr9 ENSEMBL gene 83992932 83993033 102.0 + 0 ENSG00000202523.1 misc_RNA RF00019 3 +60705 chr9 HAVANA gene 83980711 84004074 3507.0 + 0 ENSG00000178966.16 protein_coding RMI1 2 OTTHUMG00000020113.4 ncRNA_host +60706 chr9 HAVANA gene 84078584 84078857 274.0 + 0 ENSG00000270166.1 processed_pseudogene AL390838.2 2 OTTHUMG00000020114.2 overlapping_locus +60707 chr9 HAVANA gene 84063443 84094577 2007.0 + 0 ENSG00000227463.2 lincRNA AL390838.1 2 OTTHUMG00000020115.2 overlapping_locus +60708 chr9 HAVANA gene 84278219 84290131 373.0 + 0 ENSG00000233262.1 antisense AL356134.1 1 OTTHUMG00000020116.1 +60709 chr9 HAVANA gene 84275457 84340683 5063.0 - 0 ENSG00000197506.7 protein_coding SLC28A3 2 OTTHUMG00000020117.1 +60710 chr9 HAVANA gene 84604111 84604425 315.0 - 0 ENSG00000228095.3 processed_pseudogene AL354692.1 2 OTTHUMG00000020118.2 +60711 chr9 HAVANA gene 84316514 84657077 3205.0 + 0 ENSG00000285987.1 antisense AL157886.1 2 OTTHUMG00000192804.1 +60712 chr9 HAVANA gene 84668551 85027070 20363.0 + 0 ENSG00000148053.15 protein_coding NTRK2 2 OTTHUMG00000020120.2 +60713 chr9 HAVANA gene 85159682 85159950 269.0 + 0 ENSG00000226590.1 processed_pseudogene UBE2V1P10 1 OTTHUMG00000020121.1 pseudo_consens +60714 chr9 HAVANA gene 85167346 85194283 950.0 + 0 ENSG00000285556.1 lincRNA AL354897.1 2 OTTHUMG00000192665.1 +60715 chr9 HAVANA gene 85370219 85443963 3342.0 - 0 ENSG00000285634.1 lincRNA AL583827.1 2 OTTHUMG00000192857.1 +60716 chr9 HAVANA gene 85492579 85494094 1218.0 + 0 ENSG00000227412.1 processed_pseudogene STK33P1 1 OTTHUMG00000020122.1 pseudo_consens +60717 chr9 HAVANA gene 85546539 85742029 4939.0 - 0 ENSG00000135049.15 protein_coding AGTPBP1 2 OTTHUMG00000020124.3 +60718 chr9 HAVANA gene 85756042 85765112 429.0 - 0 ENSG00000229454.1 lincRNA AL157882.1 2 OTTHUMG00000020123.1 +60719 chr9 HAVANA gene 85753306 85786575 1547.0 + 0 ENSG00000234424.2 unprocessed_pseudogene AL353743.4 2 OTTHUMG00000020125.1 +60720 chr9 HAVANA gene 85785722 85793480 978.0 - 0 ENSG00000230303.5 lincRNA AL353743.2 2 OTTHUMG00000020126.1 +60721 chr9 HAVANA gene 85805359 85849542 2067.0 + 0 ENSG00000165121.11 transcribed_unprocessed_pseudogene AL353743.1 2 OTTHUMG00000020127.2 +60722 chr9 HAVANA gene 85898903 85899716 814.0 + 0 ENSG00000213711.3 processed_pseudogene PHBP7 1 OTTHUMG00000020128.2 pseudo_consens +60723 chr9 HAVANA gene 85934588 85936599 1468.0 + 0 ENSG00000231741.2 processed_pseudogene AL353743.3 1 OTTHUMG00000020129.2 pseudo_consens +60724 chr9 HAVANA gene 85941146 86022298 3641.0 + 0 ENSG00000135040.15 protein_coding NAA35 2 OTTHUMG00000020131.2 +60725 chr9 HAVANA gene 86026146 86100173 4233.0 - 0 ENSG00000135052.16 protein_coding GOLM1 2 OTTHUMG00000020130.4 +60726 chr9 HAVANA gene 86132622 86132851 230.0 + 0 ENSG00000233713.2 processed_pseudogene AL161447.1 1 OTTHUMG00000020133.2 pseudo_consens +60727 chr9 HAVANA gene 86228815 86228983 169.0 + 0 ENSG00000270688.1 processed_pseudogene AL137849.1 1 OTTHUMG00000184702.1 pseudo_consens +60728 chr9 ENSEMBL gene 86258358 86258646 289.0 - 0 ENSG00000223012.1 misc_RNA RN7SKP264 3 +60729 chr9 HAVANA gene 86220265 86259657 1932.0 - 0 ENSG00000187753.13 protein_coding C9orf153 1 OTTHUMG00000020134.3 ncRNA_host +60730 chr9 HAVANA gene 86264546 86283102 3251.0 - 0 ENSG00000135070.14 protein_coding ISCA1 2 OTTHUMG00000020135.2 +60731 chr9 HAVANA gene 86287733 86354454 6707.0 - 0 ENSG00000083223.17 protein_coding TUT7 2 OTTHUMG00000020137.1 +60732 chr9 HAVANA gene 86374966 86375706 741.0 - 0 ENSG00000214908.3 processed_pseudogene AL353678.1 1 OTTHUMG00000020136.1 pseudo_consens +60733 chr9 HAVANA gene 86414282 86414570 197.0 + 0 ENSG00000235819.1 lincRNA AL158828.1 2 OTTHUMG00000020138.1 +60734 chr9 ENSEMBL gene 86422938 86423128 191.0 - 0 ENSG00000222293.1 snRNA RNU2-36P 3 +60735 chr9 HAVANA gene 86632147 86696496 530.0 + 0 ENSG00000232211.1 lincRNA AL353613.1 2 OTTHUMG00000020140.1 +60736 chr9 HAVANA gene 86669349 86708307 1446.0 - 0 ENSG00000285686.1 lincRNA AL353613.2 2 OTTHUMG00000193262.1 +60737 chr9 HAVANA gene 86944363 86947189 2827.0 - 0 ENSG00000180447.6 protein_coding GAS1 2 OTTHUMG00000020141.1 +60738 chr9 HAVANA gene 86948699 87002033 4387.0 + 0 ENSG00000226237.1 lincRNA GAS1RR 2 OTTHUMG00000020143.1 +60739 chr9 HAVANA gene 87011652 87013151 1500.0 + 0 ENSG00000231007.5 processed_pseudogene CDC20P1 1 OTTHUMG00000020142.3 pseudo_consens +60740 chr9 HAVANA gene 87008455 87042126 2012.0 - 0 ENSG00000269994.2 lincRNA AL513318.2 2 OTTHUMG00000020144.3 +60741 chr9 HAVANA gene 87084161 87085151 991.0 - 0 ENSG00000224887.1 processed_pseudogene AL513318.1 1 OTTHUMG00000020145.1 pseudo_consens +60742 chr9 HAVANA gene 87148644 87159556 3239.0 + 0 ENSG00000204446.4 lincRNA C9orf170 2 OTTHUMG00000159587.1 +60743 chr9 ENSEMBL gene 87260450 87260585 136.0 + 0 ENSG00000212421.1 snoRNA RF00568 3 +60744 chr9 HAVANA gene 87423634 87423893 260.0 + 0 ENSG00000228373.2 processed_pseudogene AL353752.1 1 OTTHUMG00000020146.2 pseudo_consens +60745 chr9 HAVANA gene 87525302 87525475 174.0 + 0 ENSG00000219928.2 processed_pseudogene AL161787.1 2 OTTHUMG00000020147.1 overlapping_locus +60746 chr9 HAVANA gene 87553454 87554459 702.0 + 0 ENSG00000236709.1 sense_intronic DAPK1-IT1 2 OTTHUMG00000020148.1 overlapping_locus +60747 chr9 HAVANA gene 87497228 87708633 8907.0 + 0 ENSG00000196730.12 protein_coding DAPK1 1 OTTHUMG00000020150.4 overlapping_locus +60748 chr9 HAVANA gene 87725519 87731393 2366.0 + 0 ENSG00000135047.14 protein_coding CTSL 2 OTTHUMG00000020149.1 +60749 chr9 HAVANA gene 87741233 87741953 721.0 + 0 ENSG00000237747.1 processed_pseudogene AL160279.1 1 OTTHUMG00000020151.1 pseudo_consens +60750 chr9 HAVANA gene 87772453 87786884 1020.0 + 0 ENSG00000188029.8 transcribed_unprocessed_pseudogene CTSL3P 2 OTTHUMG00000020152.2 +60751 chr9 HAVANA gene 87816465 87817970 1506.0 + 0 ENSG00000232743.2 processed_pseudogene ELF2P3 1 OTTHUMG00000020153.2 pseudo_consens +60752 chr9 HAVANA gene 87799501 87821803 745.0 - 0 ENSG00000276478.1 unprocessed_pseudogene AL772337.4 2 OTTHUMG00000187814.1 overlapping_locus +60753 chr9 HAVANA gene 87825146 87825968 823.0 + 0 ENSG00000277357.1 processed_pseudogene NPAP1P7 2 OTTHUMG00000187817.1 +60754 chr9 HAVANA gene 87810642 87837225 530.0 - 0 ENSG00000237743.3 transcribed_unprocessed_pseudogene FBP2P1 2 OTTHUMG00000020158.3 overlapping_locus +60755 chr9 HAVANA gene 87844154 87847314 974.0 + 0 ENSG00000234575.2 unprocessed_pseudogene CTSLP8 2 OTTHUMG00000020154.2 +60756 chr9 HAVANA gene 87848113 87853442 981.0 - 0 ENSG00000233884.1 antisense AL772337.2 1 OTTHUMG00000020155.1 +60757 chr9 HAVANA gene 87857015 87859599 2585.0 - 0 ENSG00000214888.3 transcribed_unprocessed_pseudogene AL772337.1 2 OTTHUMG00000168028.2 +60758 chr9 HAVANA gene 87864096 87866291 756.0 + 0 ENSG00000234460.2 transcribed_unprocessed_pseudogene AL772337.3 2 OTTHUMG00000020156.2 +60759 chr9 HAVANA gene 87882826 87888899 4478.0 + 0 ENSG00000177992.9 protein_coding SPATA31E1 2 OTTHUMG00000020157.2 +60760 chr9 HAVANA gene 87914493 87923505 4657.0 + 0 ENSG00000230246.7 transcribed_unprocessed_pseudogene SPATA31C1 2 OTTHUMG00000020160.2 +60761 chr9 HAVANA gene 87944276 87945023 748.0 - 0 ENSG00000238110.1 processed_pseudogene AL353572.2 1 OTTHUMG00000020163.1 pseudo_consens +60762 chr9 HAVANA gene 87956214 87956883 670.0 + 0 ENSG00000283205.1 protein_coding AL353572.3 2 OTTHUMG00000191732.1 +60763 chr9 HAVANA gene 87966441 87974753 5727.0 - 0 ENSG00000156345.17 protein_coding CDK20 1 OTTHUMG00000020161.4 +60764 chr9 ENSEMBL gene 87998229 87998335 107.0 - 0 ENSG00000271923.1 snRNA RNU6-86P 3 +60765 chr9 HAVANA gene 88016300 88016793 494.0 + 0 ENSG00000217716.3 processed_pseudogene RPS10P3 1 OTTHUMG00000020159.2 pseudo_consens +60766 chr9 HAVANA gene 88066915 88068037 417.0 + 0 ENSG00000225385.3 processed_pseudogene AL353572.1 2 OTTHUMG00000020162.3 +60767 chr9 HAVANA gene 88129458 88138446 3777.0 - 0 ENSG00000177910.7 unprocessed_pseudogene SPATA31C2 2 OTTHUMG00000020164.2 +60768 chr9 HAVANA gene 88144851 88145850 1000.0 - 0 ENSG00000276535.1 processed_pseudogene AL353726.1 1 OTTHUMG00000187819.1 pseudo_consens +60769 chr9 HAVANA gene 88177695 88178578 884.0 + 0 ENSG00000279154.1 TEC AL353726.2 2 OTTHUMG00000175496.1 +60770 chr9 HAVANA gene 88180673 88181447 775.0 + 0 ENSG00000204429.4 processed_pseudogene AL451142.1 1 OTTHUMG00000020165.2 pseudo_consens +60771 chr9 HAVANA gene 88187735 88190202 2090.0 - 0 ENSG00000229288.1 processed_pseudogene AL451142.2 1 OTTHUMG00000020166.1 pseudo_consens +60772 chr9 HAVANA gene 88324454 88325339 886.0 + 0 ENSG00000226327.3 processed_pseudogene RPSAP49 1 OTTHUMG00000020167.2 pseudo_consens +60773 chr9 HAVANA gene 88391362 88391832 471.0 - 0 ENSG00000275017.1 processed_pseudogene AL353748.2 1 OTTHUMG00000187821.1 pseudo_consens +60774 chr9 HAVANA gene 88410529 88411463 935.0 - 0 ENSG00000227638.2 processed_pseudogene HNRNPA1P14 1 OTTHUMG00000020169.2 pseudo_consens +60775 chr9 HAVANA gene 88388419 88478694 4914.0 + 0 ENSG00000106723.16 protein_coding SPIN1 2 OTTHUMG00000020168.2 +60776 chr9 HAVANA gene 88484852 88485325 474.0 - 0 ENSG00000231804.1 processed_pseudogene AL353748.1 1 OTTHUMG00000157213.2 pseudo_consens +60777 chr9 HAVANA gene 88534033 88584274 2498.0 + 0 ENSG00000130045.16 protein_coding NXNL2 2 OTTHUMG00000020170.6 +60778 chr9 HAVANA gene 88627189 88652160 1244.0 - 0 ENSG00000228189.4 lincRNA AL592486.1 2 OTTHUMG00000020171.2 +60779 chr9 ENSEMBL gene 88745836 88745905 70.0 - 0 ENSG00000265873.1 miRNA MIR4289 3 +60780 chr9 HAVANA gene 88970887 88971341 455.0 - 0 ENSG00000225856.2 processed_pseudogene PCNPP2 1 OTTHUMG00000020174.2 pseudo_consens +60781 chr9 HAVANA gene 88971638 88976298 391.0 + 0 ENSG00000228658.1 lincRNA AL772202.1 1 OTTHUMG00000020176.1 +60782 chr9 HAVANA gene 88990863 89005010 13578.0 + 0 ENSG00000213694.4 protein_coding S1PR3 2 OTTHUMG00000020173.2 +60783 chr9 HAVANA gene 89088604 89109934 1038.0 - 0 ENSG00000224945.1 sense_intronic AL353150.1 1 OTTHUMG00000020177.1 overlapping_locus +60784 chr9 HAVANA gene 89005771 89178767 9929.0 - 0 ENSG00000148082.9 protein_coding SHC3 2 OTTHUMG00000020179.2 overlapping_locus +60785 chr9 ENSEMBL gene 89312225 89312306 82.0 + 0 ENSG00000265112.1 miRNA MIR3153 3 +60786 chr9 HAVANA gene 89311198 89316703 613.0 + 0 ENSG00000123975.4 protein_coding CKS2 2 OTTHUMG00000020180.1 ncRNA_host +60787 chr9 HAVANA gene 89318506 89359662 9813.0 + 0 ENSG00000187742.14 protein_coding SECISBP2 2 OTTHUMG00000020182.5 +60788 chr9 HAVANA gene 89449558 89450754 1197.0 + 0 ENSG00000231799.2 processed_pseudogene PA2G4P6 1 OTTHUMG00000020186.2 pseudo_consens +60789 chr9 HAVANA gene 89472237 89472692 456.0 + 0 ENSG00000225460.1 processed_pseudogene AL590233.1 1 OTTHUMG00000020184.2 pseudo_consens +60790 chr9 HAVANA gene 89360787 89498130 14160.0 - 0 ENSG00000187764.11 protein_coding SEMA4D 2 OTTHUMG00000020185.10 +60791 chr9 HAVANA gene 89563537 89604687 5273.0 - 0 ENSG00000285907.1 lincRNA AL161910.1 2 OTTHUMG00000193385.1 +60792 chr9 HAVANA gene 89605013 89606555 1322.0 + 0 ENSG00000130222.10 protein_coding GADD45G 2 OTTHUMG00000020187.1 +60793 chr9 HAVANA gene 89639814 89719759 2430.0 + 0 ENSG00000237372.2 lincRNA UNQ6494 1 OTTHUMG00000020188.4 +60794 chr9 HAVANA gene 89801727 89803061 928.0 - 0 ENSG00000236507.1 lincRNA BX470209.2 2 OTTHUMG00000067507.1 +60795 chr9 HAVANA gene 89799695 89821753 916.0 + 0 ENSG00000226206.1 lincRNA BX470209.1 2 OTTHUMG00000067508.1 +60796 chr9 HAVANA gene 89978282 89987486 457.0 + 0 ENSG00000237626.1 lincRNA AL161629.1 1 OTTHUMG00000020189.1 +60797 chr9 ENSEMBL gene 90023441 90023535 95.0 - 0 ENSG00000263967.1 miRNA MIR4290 3 +60798 chr9 HAVANA gene 90020654 90041499 2720.0 - 0 ENSG00000227555.1 lincRNA MIR4290HG 2 OTTHUMG00000020191.1 ncRNA_host +60799 chr9 HAVANA gene 90081297 90082569 1273.0 - 0 ENSG00000234910.2 processed_pseudogene IL6RP1 2 OTTHUMG00000020190.2 +60800 chr9 HAVANA gene 90108244 90108518 275.0 + 0 ENSG00000278382.1 processed_pseudogene AL161629.2 1 OTTHUMG00000187824.1 pseudo_consens +60801 chr9 HAVANA gene 90158028 90158646 619.0 + 0 ENSG00000279503.1 TEC AL353649.1 2 OTTHUMG00000175611.1 +60802 chr9 HAVANA gene 90216039 90216924 886.0 + 0 ENSG00000185074.7 unprocessed_pseudogene OR7E31P 1 OTTHUMG00000020192.2 pseudo_consens +60803 chr9 HAVANA gene 90232185 90233141 957.0 + 0 ENSG00000225072.1 unprocessed_pseudogene OR7E116P 1 OTTHUMG00000020193.1 pseudo_consens +60804 chr9 HAVANA gene 90300902 90433505 1597.0 - 0 ENSG00000231107.1 lincRNA LINC01508 2 OTTHUMG00000020194.1 +60805 chr9 HAVANA gene 90463524 90582744 1180.0 - 0 ENSG00000229613.1 lincRNA LINC01501 2 OTTHUMG00000020197.1 +60806 chr9 HAVANA gene 90609832 90643105 4686.0 - 0 ENSG00000165023.6 protein_coding DIRAS2 2 OTTHUMG00000020196.2 retrogene +60807 chr9 HAVANA gene 90742526 90743380 855.0 - 0 ENSG00000236316.2 unprocessed_pseudogene OR7E109P 2 OTTHUMG00000020198.1 +60808 chr9 HAVANA gene 90751240 90752230 991.0 - 0 ENSG00000270432.1 unprocessed_pseudogene OR7E108P 1 OTTHUMG00000184640.1 pseudo_consens +60809 chr9 HAVANA gene 90801787 90898549 5210.0 + 0 ENSG00000165025.14 protein_coding SYK 2 OTTHUMG00000020200.1 +60810 chr9 HAVANA gene 90957260 90965393 295.0 - 0 ENSG00000228216.1 lincRNA AL355607.1 2 OTTHUMG00000020201.1 +60811 chr9 HAVANA gene 90997054 91001871 1395.0 + 0 ENSG00000260454.1 lincRNA AL355607.2 2 OTTHUMG00000175788.1 +60812 chr9 HAVANA gene 91104957 91107304 815.0 - 0 ENSG00000230537.1 lincRNA AL158071.2 2 OTTHUMG00000020202.1 +60813 chr9 HAVANA gene 91119138 91163087 506.0 - 0 ENSG00000237422.1 lincRNA AL158071.3 2 OTTHUMG00000020204.1 +60814 chr9 HAVANA gene 91159573 91165658 3697.0 + 0 ENSG00000235641.4 lincRNA LINC00484 2 OTTHUMG00000020203.4 overlapping_locus +60815 chr9 HAVANA gene 91169585 91170045 461.0 - 0 ENSG00000230147.2 processed_pseudogene AL158071.1 1 OTTHUMG00000020206.2 pseudo_consens +60816 chr9 HAVANA gene 91119062 91182762 984.0 + 0 ENSG00000229694.6 lincRNA LINC00484 2 OTTHUMG00000020205.2 overlapping_locus +60817 chr9 HAVANA gene 91206175 91210299 4125.0 - 0 ENSG00000273381.1 lincRNA AL158071.4 2 OTTHUMG00000186454.1 +60818 chr9 HAVANA gene 91213815 91361913 2258.0 - 0 ENSG00000148090.11 protein_coding AUH 2 OTTHUMG00000020207.1 +60819 chr9 HAVANA gene 91409045 91423862 2085.0 - 0 ENSG00000165030.3 protein_coding NFIL3 2 OTTHUMG00000020209.2 +60820 chr9 HAVANA gene 91426238 91427144 474.0 + 0 ENSG00000233081.1 lincRNA AL353764.1 1 OTTHUMG00000020208.1 +60821 chr9 HAVANA gene 91611343 91612492 1150.0 + 0 ENSG00000228595.1 processed_pseudogene PAICSP2 1 OTTHUMG00000020210.1 pseudo_consens +60822 chr9 ENSEMBL gene 91636264 91636345 82.0 - 0 ENSG00000283351.1 miRNA MIR3910-2 3 +60823 chr9 ENSEMBL gene 91636251 91636361 111.0 + 0 ENSG00000266855.1 miRNA MIR3910-1 3 +60824 chr9 HAVANA gene 91563091 91950162 5818.0 - 0 ENSG00000169071.14 protein_coding ROR2 2 OTTHUMG00000020211.4 ncRNA_host +60825 chr9 HAVANA gene 92006062 92006544 483.0 + 0 ENSG00000227399.1 processed_pseudogene AL391219.1 1 OTTHUMG00000020212.1 pseudo_consens +60826 chr9 HAVANA gene 92027498 92027824 327.0 + 0 ENSG00000237306.1 processed_pseudogene HSPE1P22 1 OTTHUMG00000020213.1 pseudo_consens +60827 chr9 HAVANA gene 92104425 92105451 1027.0 + 0 ENSG00000275756.1 processed_pseudogene AL354751.3 2 OTTHUMG00000187825.1 +60828 chr9 HAVANA gene 92108858 92108989 132.0 + 0 ENSG00000232179.1 unprocessed_pseudogene MTATP6P29 2 OTTHUMG00000021035.1 +60829 chr9 HAVANA gene 92109013 92110095 779.0 + 0 ENSG00000228069.1 unprocessed_pseudogene MTCO3P29 2 OTTHUMG00000020215.1 +60830 chr9 HAVANA gene 92110168 92110514 347.0 + 0 ENSG00000238288.1 unprocessed_pseudogene MTND3P23 2 OTTHUMG00000021038.1 +60831 chr9 HAVANA gene 92110575 92110868 294.0 + 0 ENSG00000240791.1 unprocessed_pseudogene MTND4LP7 2 OTTHUMG00000020217.1 overlapping_locus +60832 chr9 HAVANA gene 92110865 92111897 1033.0 + 0 ENSG00000227321.2 unprocessed_pseudogene MTND4P15 1 OTTHUMG00000020218.1 pseudo_consens,overlapping_locus +60833 chr9 HAVANA gene 92000087 92115384 6484.0 - 0 ENSG00000090054.14 protein_coding SPTLC1 2 OTTHUMG00000021047.2 +60834 chr9 HAVANA gene 92132398 92138629 1863.0 + 0 ENSG00000234537.1 unprocessed_pseudogene AL354751.1 2 OTTHUMG00000021040.1 +60835 chr9 HAVANA gene 92150382 92157445 210.0 - 0 ENSG00000236717.2 unprocessed_pseudogene AL354751.2 2 OTTHUMG00000020214.2 +60836 chr9 HAVANA gene 92141298 92160114 3858.0 + 0 ENSG00000225511.7 transcribed_unprocessed_pseudogene LINC00475 2 OTTHUMG00000020216.3 +60837 chr9 HAVANA gene 92171241 92173494 2254.0 + 0 ENSG00000224809.2 processed_pseudogene BEND3P2 1 OTTHUMG00000020220.2 pseudo_consens +60838 chr9 HAVANA gene 92177235 92188652 505.0 - 0 ENSG00000276717.1 unprocessed_pseudogene AL136097.3 2 OTTHUMG00000187827.1 +60839 chr9 HAVANA gene 92205356 92210158 333.0 + 0 ENSG00000236115.1 antisense AL136097.2 2 OTTHUMG00000020222.1 +60840 chr9 ENSEMBL gene 92292458 92292547 90.0 - 0 ENSG00000281156.1 miRNA MIR3651 3 +60841 chr9 ENSEMBL gene 92292461 92292593 133.0 - 0 ENSG00000239183.1 snoRNA SNORA84 3 +60842 chr9 HAVANA gene 92210207 92293756 7401.0 - 0 ENSG00000196305.17 protein_coding IARS 1 OTTHUMG00000020219.3 ncRNA_host +60843 chr9 HAVANA gene 92297358 92325636 8056.0 - 0 ENSG00000198000.11 protein_coding NOL8 1 OTTHUMG00000020221.6 +60844 chr9 HAVANA gene 92339658 92341663 913.0 - 0 ENSG00000229530.1 processed_pseudogene AL136097.1 1 OTTHUMG00000020223.1 pseudo_consens +60845 chr9 HAVANA gene 92383967 92404696 3321.0 - 0 ENSG00000106809.10 protein_coding OGN 2 OTTHUMG00000020224.3 +60846 chr9 HAVANA gene 92414245 92424461 2449.0 - 0 ENSG00000127083.7 protein_coding OMD 2 OTTHUMG00000020225.1 +60847 chr9 HAVANA gene 92456205 92482506 2470.0 - 0 ENSG00000106819.11 protein_coding ASPN 1 OTTHUMG00000020227.1 +60848 chr9 ENSEMBL gene 92527984 92528058 75.0 - 0 ENSG00000264158.1 miRNA MIR4670 3 +60849 chr9 HAVANA gene 92493554 92536655 4916.0 - 0 ENSG00000106823.12 protein_coding ECM2 2 OTTHUMG00000020226.2 ncRNA_host +60850 chr9 HAVANA gene 92539053 92539184 132.0 - 0 ENSG00000225551.1 unprocessed_pseudogene AL157827.1 2 OTTHUMG00000020229.1 +60851 chr9 HAVANA gene 92600094 92612368 3199.0 - 0 ENSG00000285650.1 antisense AL157827.2 2 OTTHUMG00000192702.1 +60852 chr9 HAVANA gene 92325484 92620533 9794.0 + 0 ENSG00000188312.13 protein_coding CENPP 2 OTTHUMG00000020228.1 +60853 chr9 HAVANA gene 92613184 92670265 5166.0 - 0 ENSG00000127080.9 protein_coding IPPK 2 OTTHUMG00000020231.1 +60854 chr9 HAVANA gene 92676943 92677407 465.0 - 0 ENSG00000213669.2 processed_pseudogene AL137074.1 1 OTTHUMG00000020230.1 pseudo_consens +60855 chr9 HAVANA gene 92711363 92764812 6427.0 - 0 ENSG00000185963.13 protein_coding BICD2 2 OTTHUMG00000021036.1 +60856 chr9 ENSEMBL gene 92820977 92821079 103.0 + 0 ENSG00000252772.1 snRNA RNU6-714P 3 +60857 chr9 HAVANA gene 92836826 92837668 843.0 - 0 ENSG00000226721.2 processed_pseudogene EEF1DP2 1 OTTHUMG00000020238.2 pseudo_consens +60858 chr9 HAVANA gene 92840955 92841688 734.0 - 0 ENSG00000275318.1 unprocessed_pseudogene AL136981.2 2 OTTHUMG00000187829.1 +60859 chr9 HAVANA gene 92845031 92878038 4031.0 - 0 ENSG00000127081.13 protein_coding ZNF484 2 OTTHUMG00000020236.3 +60860 chr9 HAVANA gene 92809388 92888693 2947.0 + 0 ENSG00000187984.12 transcribed_unprocessed_pseudogene ANKRD19P 2 OTTHUMG00000020237.4 overlapping_locus +60861 chr9 HAVANA gene 92893698 92894505 808.0 - 0 ENSG00000232843.2 processed_pseudogene SNX18P2 2 OTTHUMG00000020235.2 +60862 chr9 HAVANA gene 92882567 92899608 4835.0 + 0 ENSG00000226668.5 transcribed_unprocessed_pseudogene AL136981.1 2 OTTHUMG00000020234.2 overlapping_locus +60863 chr9 HAVANA gene 92913156 92921560 1897.0 + 0 ENSG00000188101.5 unprocessed_pseudogene ALOX15P2 2 OTTHUMG00000020239.1 +60864 chr9 HAVANA gene 92947451 93036236 5890.0 + 0 ENSG00000127084.18 protein_coding FGD3 2 OTTHUMG00000021032.7 +60865 chr9 HAVANA gene 93058688 93085138 1263.0 + 0 ENSG00000157303.10 protein_coding SUSD3 2 OTTHUMG00000020241.3 +60866 chr9 HAVANA gene 93094939 93095529 238.0 - 0 ENSG00000223446.1 antisense AL451065.1 2 OTTHUMG00000020240.1 +60867 chr9 HAVANA gene 93096218 93113283 3081.0 + 0 ENSG00000165233.17 protein_coding CARD19 2 OTTHUMG00000020243.3 +60868 chr9 HAVANA gene 93121489 93134288 2648.0 - 0 ENSG00000131669.9 protein_coding NINJ1 2 OTTHUMG00000020242.2 +60869 chr9 HAVANA gene 93147040 93148556 410.0 + 0 ENSG00000203364.2 lincRNA AL390760.1 2 OTTHUMG00000020244.1 +60870 chr9 HAVANA gene 93184916 93320572 13198.0 + 0 ENSG00000165238.16 protein_coding WNK2 1 OTTHUMG00000020247.4 +60871 chr9 HAVANA gene 93318199 93346414 1154.0 - 0 ENSG00000204352.3 protein_coding C9orf129 2 OTTHUMG00000020248.2 +60872 chr9 ENSEMBL gene 93375556 93375667 112.0 + 0 ENSG00000200570.1 snRNA RNU6-829P 3 +60873 chr9 ENSEMBL gene 93417855 93417966 112.0 + 0 ENSG00000201074.1 misc_RNA RF00019 3 +60874 chr9 HAVANA gene 93430342 93431299 641.0 - 0 ENSG00000237385.1 antisense AL583839.1 2 OTTHUMG00000020245.1 +60875 chr9 HAVANA gene 93431441 93453592 10147.0 - 0 ENSG00000188938.16 protein_coding FAM120AOS 2 OTTHUMG00000020251.6 +60876 chr9 HAVANA gene 93451722 93566107 7204.0 + 0 ENSG00000048828.16 protein_coding FAM120A 2 OTTHUMG00000020252.2 +60877 chr9 ENSEMBL gene 93594841 93594894 54.0 + 0 ENSG00000283146.1 miRNA MIR548AU 3 +60878 chr9 HAVANA gene 93576407 93679587 5569.0 + 0 ENSG00000197724.10 protein_coding PHF2 2 OTTHUMG00000020253.2 ncRNA_host +60879 chr9 ENSEMBL gene 93819357 93819421 65.0 + 0 ENSG00000265347.1 miRNA MIR4291 3 +60880 chr9 HAVANA gene 93857083 93858333 391.0 + 0 ENSG00000231990.1 lincRNA AL442224.1 1 OTTHUMG00000020254.1 +60881 chr9 HAVANA gene 93951622 93955372 1777.0 - 0 ENSG00000131668.13 protein_coding BARX1 2 OTTHUMG00000020255.5 +60882 chr9 HAVANA gene 93955597 93959140 1704.0 + 0 ENSG00000235601.1 lincRNA BARX1-DT 2 OTTHUMG00000020256.1 +60883 chr9 HAVANA gene 94038030 94038345 316.0 + 0 ENSG00000227666.1 processed_pseudogene CYCSP24 1 OTTHUMG00000020257.1 pseudo_consens,overlapping_locus +60884 chr9 HAVANA gene 94030794 94109856 6342.0 + 0 ENSG00000158079.15 protein_coding PTPDC1 1 OTTHUMG00000020258.4 overlapping_locus +60885 chr9 ENSEMBL gene 94175957 94176036 80.0 + 0 ENSG00000199165.3 miRNA MIRLET7A1 3 +60886 chr9 ENSEMBL gene 94176347 94176433 87.0 + 0 ENSG00000199072.3 miRNA MIRLET7F1 3 +60887 chr9 HAVANA gene 94176458 94177892 1435.0 + 0 ENSG00000269929.1 lincRNA AL158152.1 2 OTTHUMG00000183960.1 overlapping_locus +60888 chr9 ENSEMBL gene 94178834 94178920 87.0 + 0 ENSG00000199133.3 miRNA MIRLET7D 3 +60889 chr9 HAVANA gene 94166289 94200627 235.0 + 0 ENSG00000269946.1 lincRNA AL158152.2 2 OTTHUMG00000184012.1 ncRNA_host,overlapping_locus +60890 chr9 HAVANA gene 94176602 94204568 1319.0 - 0 ENSG00000230262.6 lincRNA LINC02603 2 OTTHUMG00000020259.3 +60891 chr9 HAVANA gene 94287699 94288550 852.0 - 0 ENSG00000237679.2 processed_pseudogene VDAC1P11 1 OTTHUMG00000020261.2 pseudo_consens +60892 chr9 HAVANA gene 94259311 94301454 5286.0 + 0 ENSG00000175787.16 protein_coding ZNF169 2 OTTHUMG00000020264.3 +60893 chr9 HAVANA gene 94318196 94328644 2561.0 - 0 ENSG00000130950.13 protein_coding NUTM2F 2 OTTHUMG00000020260.4 +60894 chr9 HAVANA gene 94338347 94338733 387.0 - 0 ENSG00000224815.3 processed_pseudogene AL691447.1 1 OTTHUMG00000020263.3 pseudo_consens +60895 chr9 HAVANA gene 94347234 94347563 330.0 - 0 ENSG00000282886.1 processed_pseudogene AL691447.3 2 OTTHUMG00000191515.1 +60896 chr9 HAVANA gene 94332476 94360948 2162.0 + 0 ENSG00000232063.1 lincRNA AL691447.2 2 OTTHUMG00000020262.1 +60897 chr9 HAVANA gene 94432631 94433273 643.0 - 0 ENSG00000278486.1 processed_pseudogene YRDCP1 1 OTTHUMG00000187831.1 pseudo_consens +60898 chr9 HAVANA gene 94374551 94461042 3428.0 + 0 ENSG00000148110.15 protein_coding MFSD14B 2 OTTHUMG00000020265.1 +60899 chr9 ENSEMBL gene 94507738 94507844 107.0 + 0 ENSG00000202445.1 snRNA RNU6-669P 3 +60900 chr9 HAVANA gene 94496275 94512879 501.0 + 0 ENSG00000224245.1 unprocessed_pseudogene AL358232.1 2 OTTHUMG00000020267.1 +60901 chr9 HAVANA gene 94558720 94593793 1305.0 - 0 ENSG00000130957.4 protein_coding FBP2 2 OTTHUMG00000020269.1 +60902 chr9 HAVANA gene 94555054 94603990 5904.0 + 0 ENSG00000231806.3 antisense PCAT7 2 OTTHUMG00000020270.4 +60903 chr9 HAVANA gene 94603133 94640249 1739.0 - 0 ENSG00000165140.10 protein_coding FBP1 2 OTTHUMG00000020268.3 +60904 chr9 ENSEMBL gene 94809962 94810057 96.0 + 0 ENSG00000252153.1 miRNA MIR2278 3 +60905 chr9 HAVANA gene 94824272 94824773 424.0 + 0 ENSG00000230815.1 sense_intronic AL807757.1 2 OTTHUMG00000020272.1 overlapping_locus +60906 chr9 HAVANA gene 94900429 94904754 779.0 + 0 ENSG00000236095.1 sense_intronic AL807757.2 2 OTTHUMG00000020273.1 overlapping_locus +60907 chr9 HAVANA gene 94928551 94934946 487.0 - 0 ENSG00000224764.1 antisense AL353768.1 2 OTTHUMG00000020274.1 +60908 chr9 HAVANA gene 94964369 94965624 555.0 - 0 ENSG00000285807.1 antisense AL353768.2 2 OTTHUMG00000192852.1 +60909 chr9 ENSEMBL gene 95065350 95065446 97.0 + 0 ENSG00000274115.1 miRNA MIR6081 3 +60910 chr9 ENSEMBL gene 95085208 95085304 97.0 + 0 ENSG00000207563.1 miRNA MIR23B 3 +60911 chr9 ENSEMBL gene 95085445 95085541 97.0 + 0 ENSG00000207864.3 miRNA MIR27B 3 +60912 chr9 ENSEMBL gene 95086021 95086088 68.0 + 0 ENSG00000284459.1 miRNA MIR24-1 3 +60913 chr9 ENSEMBL gene 95086014 95086094 81.0 - 0 ENSG00000207617.4 miRNA MIR3074 3 +60914 chr9 HAVANA gene 94726701 95087218 10742.0 + 0 ENSG00000148120.16 protein_coding C9orf3 2 OTTHUMG00000020276.4 ncRNA_host,overlapping_locus +60915 chr9 HAVANA gene 95113708 95114461 529.0 + 0 ENSG00000229065.1 antisense AL354893.2 2 OTTHUMG00000020277.1 +60916 chr9 HAVANA gene 95123521 95123868 348.0 + 0 ENSG00000223849.1 processed_pseudogene AL354893.1 1 OTTHUMG00000020275.1 pseudo_consens +60917 chr9 ENSEMBL gene 95142449 95142541 93.0 - 0 ENSG00000251884.1 rRNA_pseudogene RNA5SP288 3 +60918 chr9 HAVANA gene 95292338 95294810 2473.0 + 0 ENSG00000230221.2 processed_pseudogene AL157384.1 2 OTTHUMG00000020278.2 +60919 chr9 HAVANA gene 95406990 95407662 673.0 - 0 ENSG00000271384.1 lincRNA AL161729.3 2 OTTHUMG00000185269.1 +60920 chr9 HAVANA gene 95413267 95413449 183.0 - 0 ENSG00000213761.4 processed_pseudogene MT1P1 1 OTTHUMG00000020282.4 pseudo_consens +60921 chr9 HAVANA gene 95099054 95426796 9316.0 - 0 ENSG00000158169.13 protein_coding FANCC 2 OTTHUMG00000020279.9 +60922 chr9 HAVANA gene 95494924 95495379 456.0 + 0 ENSG00000271314.1 antisense AL161729.2 2 OTTHUMG00000185270.1 +60923 chr9 HAVANA gene 95506235 95507636 1402.0 + 0 ENSG00000271155.1 antisense AL161729.1 2 OTTHUMG00000185271.1 +60924 chr9 HAVANA gene 95514045 95514520 476.0 + 0 ENSG00000271659.1 antisense AL161729.4 2 OTTHUMG00000185272.1 +60925 chr9 HAVANA gene 95442980 95517057 16591.0 - 0 ENSG00000185920.15 protein_coding PTCH1 1 OTTHUMG00000020280.5 +60926 chr9 HAVANA gene 95599438 95606326 1022.0 - 0 ENSG00000229345.2 lincRNA AL392185.1 2 OTTHUMG00000020283.2 +60927 chr9 HAVANA gene 95652912 95653266 355.0 + 0 ENSG00000227358.1 processed_pseudogene AL354861.1 1 OTTHUMG00000020284.1 pseudo_consens,overlapping_locus +60928 chr9 HAVANA gene 95650154 95715718 512.0 + 0 ENSG00000228142.2 lincRNA AL354861.2 2 OTTHUMG00000020285.2 overlapping_locus +60929 chr9 HAVANA gene 95772323 95776282 3919.0 + 0 ENSG00000268926.3 lincRNA AL354861.3 2 OTTHUMG00000187223.2 +60930 chr9 ENSEMBL gene 95859904 95860016 113.0 + 0 ENSG00000252847.1 snRNA RNU2-46P 3 +60931 chr9 HAVANA gene 95759231 95875977 5100.0 - 0 ENSG00000175611.11 lincRNA LINC00476 2 OTTHUMG00000020286.2 +60932 chr9 ENSEMBL gene 95905005 95905141 137.0 + 0 ENSG00000199202.1 rRNA_pseudogene RNA5SP289 3 +60933 chr9 HAVANA gene 95918136 95918704 569.0 + 0 ENSG00000237631.2 processed_pseudogene AL161454.1 1 OTTHUMG00000020287.2 pseudo_consens,overlapping_locus +60934 chr9 HAVANA gene 95875701 96014571 10352.0 + 0 ENSG00000182150.15 protein_coding ERCC6L2 1 OTTHUMG00000020289.7 overlapping_locus +60935 chr9 HAVANA gene 96019724 96027993 4849.0 - 0 ENSG00000225194.3 lincRNA LINC00092 2 OTTHUMG00000020288.3 +60936 chr9 HAVANA gene 96095211 96101912 1577.0 + 0 ENSG00000237212.1 lincRNA AL449403.1 2 OTTHUMG00000020291.1 +60937 chr9 ENSEMBL gene 96103079 96103174 96.0 - 0 ENSG00000201938.1 misc_RNA RF00019 3 +60938 chr9 HAVANA gene 96106661 96116411 2662.0 - 0 ENSG00000275465.6 lincRNA AL449403.2 2 OTTHUMG00000189252.2 +60939 chr9 HAVANA gene 96146007 96147856 1850.0 + 0 ENSG00000224546.2 processed_pseudogene EIF4BP3 1 OTTHUMG00000020290.2 pseudo_consens +60940 chr9 HAVANA gene 96246462 96250393 1072.0 + 0 ENSG00000232283.1 antisense HSD17B3-AS1 2 OTTHUMG00000020294.1 +60941 chr9 ENSEMBL gene 96256216 96256319 104.0 - 0 ENSG00000207276.1 snRNA RNU6-1160P 3 +60942 chr9 HAVANA gene 96235306 96302176 2577.0 - 0 ENSG00000130948.10 protein_coding HSD17B3 2 OTTHUMG00000020292.7 ncRNA_host +60943 chr9 HAVANA gene 96235331 96352058 4087.0 - 0 ENSG00000285269.2 protein_coding AL160269.1 2 OTTHUMG00000192521.3 ncRNA_host,overlapping_locus +60944 chr9 HAVANA gene 96313444 96383710 3830.0 - 0 ENSG00000130958.12 protein_coding SLC35D2 2 OTTHUMG00000020293.6 +60945 chr9 HAVANA gene 96407284 96407797 514.0 + 0 ENSG00000238251.2 processed_pseudogene AL133477.1 1 OTTHUMG00000020296.2 pseudo_consens +60946 chr9 HAVANA gene 96385941 96418329 3646.0 - 0 ENSG00000165244.6 protein_coding ZNF367 2 OTTHUMG00000020295.1 +60947 chr9 HAVANA gene 96450201 96491336 4056.0 + 0 ENSG00000130956.13 protein_coding HABP4 2 OTTHUMG00000020298.1 +60948 chr9 HAVANA gene 96490241 96619830 10462.0 - 0 ENSG00000081377.16 protein_coding CDC14B 2 OTTHUMG00000020300.5 +60949 chr9 HAVANA gene 96639577 96655303 3084.0 - 0 ENSG00000158122.11 protein_coding PRXL2C 2 OTTHUMG00000020299.1 +60950 chr9 HAVANA gene 96687056 96721121 425.0 + 0 ENSG00000224848.1 lincRNA AL589843.1 2 OTTHUMG00000020301.1 +60951 chr9 HAVANA gene 96725890 96727469 1488.0 + 0 ENSG00000233820.2 transcribed_processed_pseudogene AL589843.2 2 OTTHUMG00000020302.2 +60952 chr9 HAVANA gene 96755865 96778129 5921.0 - 0 ENSG00000081386.12 protein_coding ZNF510 2 OTTHUMG00000020303.2 +60953 chr9 HAVANA gene 96816472 96875623 4622.0 - 0 ENSG00000196597.11 protein_coding ZNF782 2 OTTHUMG00000020310.3 +60954 chr9 HAVANA gene 96910076 96910405 330.0 + 0 ENSG00000269907.1 processed_pseudogene AL158827.2 2 OTTHUMG00000020306.2 +60955 chr9 HAVANA gene 96918928 96919318 391.0 + 0 ENSG00000227257.1 processed_pseudogene AL158827.1 1 OTTHUMG00000020307.2 pseudo_consens +60956 chr9 HAVANA gene 96928310 96940253 3906.0 + 0 ENSG00000188152.12 protein_coding NUTM2G 2 OTTHUMG00000020305.2 +60957 chr9 HAVANA gene 96954820 96955461 642.0 + 0 ENSG00000236745.2 processed_pseudogene YRDCP2 1 OTTHUMG00000020308.2 pseudo_consens +60958 chr9 HAVANA gene 96887373 97013708 12153.0 - 0 ENSG00000196312.13 protein_coding MFSD14C 2 OTTHUMG00000020317.5 +60959 chr9 HAVANA gene 97029679 97039643 4700.0 - 0 ENSG00000136943.10 protein_coding CTSV 2 OTTHUMG00000020314.2 +60960 chr9 HAVANA gene 97067749 97068628 880.0 + 0 ENSG00000197214.5 processed_pseudogene TCEA1P1 1 OTTHUMG00000020311.2 pseudo_consens +60961 chr9 HAVANA gene 97075671 97081945 2262.0 - 0 ENSG00000228376.3 transcribed_processed_pseudogene GAS2L1P2 1 OTTHUMG00000020312.2 pseudo_consens +60962 chr9 HAVANA gene 97093694 97094638 945.0 - 0 ENSG00000228038.1 processed_pseudogene VN1R51P 2 OTTHUMG00000020315.1 +60963 chr9 HAVANA gene 97121659 97122489 831.0 + 0 ENSG00000213612.3 processed_pseudogene FAM220CP 1 OTTHUMG00000020316.2 pseudo_consens +60964 chr9 HAVANA gene 97151894 97152694 801.0 - 0 ENSG00000277103.1 processed_pseudogene AL445670.1 1 OTTHUMG00000187832.1 pseudo_consens +60965 chr9 ENSEMBL gene 97192923 97193025 103.0 - 0 ENSG00000252721.1 snRNA RNU6-798P 3 +60966 chr9 HAVANA gene 97195351 97197687 474.0 - 0 ENSG00000242375.1 lincRNA AL590705.3 2 OTTHUMG00000020319.1 overlapping_locus +60967 chr9 HAVANA gene 97198303 97199511 1209.0 - 0 ENSG00000188801.9 processed_pseudogene ZNF322P1 2 OTTHUMG00000020322.3 overlapping_locus +60968 chr9 HAVANA gene 97156570 97221235 2980.0 - 0 ENSG00000159712.10 unprocessed_pseudogene ANKRD18CP 2 OTTHUMG00000020318.3 overlapping_locus +60969 chr9 HAVANA gene 97233201 97235014 281.0 + 0 ENSG00000235494.1 lincRNA AL590705.2 1 OTTHUMG00000020320.1 +60970 chr9 HAVANA gene 97200475 97238700 806.0 - 0 ENSG00000203279.3 lincRNA AL590705.1 2 OTTHUMG00000020321.2 overlapping_locus +60971 chr9 HAVANA gene 97238645 97246184 134.0 + 0 ENSG00000254483.1 unprocessed_pseudogene SUGT1P4 2 OTTHUMG00000020323.3 overlapping_locus +60972 chr9 HAVANA gene 97276566 97295759 1341.0 + 0 ENSG00000254633.1 unitary_pseudogene AL512590.2 2 OTTHUMG00000167000.1 overlapping_locus +60973 chr9 HAVANA gene 97238449 97297314 3701.0 + 0 ENSG00000254876.5 processed_transcript SUGT1P4-STRA6LP 2 OTTHUMG00000166998.1 overlapping_locus +60974 chr9 ENSEMBL gene 97363554 97363681 128.0 - 0 ENSG00000221269.1 miRNA MIR1302-8 3 +60975 chr9 HAVANA gene 97238497 97377287 7116.0 + 0 ENSG00000255036.6 processed_transcript STRA6LP 2 OTTHUMG00000166999.1 overlapping_locus +60976 chr9 HAVANA gene 97307304 97378524 14155.0 + 0 ENSG00000197816.13 protein_coding CCDC180 2 OTTHUMG00000167001.1 overlapping_locus +60977 chr9 HAVANA gene 97386240 97396112 821.0 - 0 ENSG00000228957.1 unprocessed_pseudogene AL512590.1 2 OTTHUMG00000020324.1 +60978 chr9 HAVANA gene 97411950 97496125 4320.0 + 0 ENSG00000196116.7 protein_coding TDRD7 2 OTTHUMG00000020326.1 +60979 chr9 HAVANA gene 97512706 97517836 1408.0 - 0 ENSG00000228174.7 antisense AL162385.1 1 OTTHUMG00000020329.3 +60980 chr9 HAVANA gene 97501180 97601748 3708.0 + 0 ENSG00000136842.13 protein_coding TMOD1 1 OTTHUMG00000020325.2 +60981 chr9 HAVANA gene 97600080 97633575 5875.0 - 0 ENSG00000136925.14 protein_coding TSTD2 2 OTTHUMG00000020328.6 +60982 chr9 HAVANA gene 97634515 97636051 285.0 - 0 ENSG00000231521.1 antisense AL162385.2 2 OTTHUMG00000020327.1 +60983 chr9 HAVANA gene 97633626 97673748 5548.0 + 0 ENSG00000136937.12 protein_coding NCBP1 2 OTTHUMG00000020332.4 +60984 chr9 HAVANA gene 97674909 97697357 1833.0 - 0 ENSG00000136936.10 protein_coding XPA 2 OTTHUMG00000020330.3 +60985 chr9 HAVANA gene 97698922 97700734 1290.0 + 0 ENSG00000214417.4 processed_pseudogene KRT18P13 1 OTTHUMG00000020331.2 pseudo_consens +60986 chr9 HAVANA gene 97743208 97744935 1728.0 + 0 ENSG00000260677.1 lincRNA AL445531.1 2 OTTHUMG00000175666.1 +60987 chr9 HAVANA gene 97699625 97853080 2283.0 - 0 ENSG00000236130.2 lincRNA PTCSC2 1 OTTHUMG00000020335.2 +60988 chr9 HAVANA gene 97853254 97856715 3462.0 + 0 ENSG00000178919.8 protein_coding FOXE1 2 OTTHUMG00000020333.1 +60989 chr9 ENSEMBL gene 97915690 97915796 107.0 + 0 ENSG00000201830.1 misc_RNA RF00019 3 +60990 chr9 HAVANA gene 97904489 97922570 4203.0 - 0 ENSG00000136932.13 protein_coding TRMO 2 OTTHUMG00000021007.1 +60991 chr9 HAVANA gene 97926791 97944856 2394.0 - 0 ENSG00000136929.12 protein_coding HEMGN 2 OTTHUMG00000020336.2 +60992 chr9 HAVANA gene 97986551 97987656 402.0 - 0 ENSG00000236896.1 antisense AL354726.1 1 OTTHUMG00000020337.1 +60993 chr9 HAVANA gene 97983361 98015943 1850.0 + 0 ENSG00000136938.8 protein_coding ANP32B 2 OTTHUMG00000020338.4 +60994 chr9 ENSEMBL gene 98032230 98032335 106.0 + 0 ENSG00000212521.1 snRNA RNU6-918P 3 +60995 chr9 HAVANA gene 98056739 98083075 4922.0 + 0 ENSG00000095380.10 protein_coding NANS 2 OTTHUMG00000020341.2 +60996 chr9 ENSEMBL gene 98115885 98116135 251.0 + 0 ENSG00000274011.1 misc_RNA RF00017 3 +60997 chr9 HAVANA gene 98069275 98119212 5469.0 - 0 ENSG00000106785.14 protein_coding TRIM14 2 OTTHUMG00000020339.4 +60998 chr9 HAVANA gene 98120975 98192640 5717.0 - 0 ENSG00000106789.12 protein_coding CORO2A 2 OTTHUMG00000020340.1 +60999 chr9 ENSEMBL gene 98229149 98229217 69.0 - 0 ENSG00000278412.1 miRNA MIR6854 3 +61000 chr9 HAVANA gene 98234709 98235567 555.0 + 0 ENSG00000224001.2 processed_pseudogene AL360081.1 1 OTTHUMG00000020342.2 pseudo_consens +61001 chr9 HAVANA gene 98198999 98255721 3681.0 - 0 ENSG00000095383.19 protein_coding TBC1D2 2 OTTHUMG00000020343.3 ncRNA_host +61002 chr9 HAVANA gene 98606833 98608133 1301.0 + 0 ENSG00000229897.2 processed_pseudogene SEPT7P7 1 OTTHUMG00000020344.2 pseudo_consens +61003 chr9 HAVANA gene 98288082 98709197 7632.0 - 0 ENSG00000136928.6 protein_coding GABBR2 2 OTTHUMG00000020345.5 +61004 chr9 HAVANA gene 98731329 98796965 8846.0 - 0 ENSG00000165138.17 protein_coding ANKS6 1 OTTHUMG00000020347.3 +61005 chr9 HAVANA gene 98798466 98807564 1938.0 - 0 ENSG00000285706.1 bidirectional_promoter_lncRNA AL807776.1 2 OTTHUMG00000192871.1 +61006 chr9 HAVANA gene 98807699 98850081 3137.0 + 0 ENSG00000119514.6 protein_coding GALNT12 2 OTTHUMG00000020348.2 +61007 chr9 HAVANA gene 98847172 98872415 4778.0 - 0 ENSG00000267026.5 antisense AL136084.2 2 OTTHUMG00000020349.3 +61008 chr9 HAVANA gene 98890590 98891937 318.0 + 0 ENSG00000229338.1 processed_pseudogene AL136084.1 1 OTTHUMG00000020350.1 pseudo_consens +61009 chr9 HAVANA gene 98943337 98943775 439.0 - 0 ENSG00000270412.1 antisense AL136084.3 2 OTTHUMG00000185170.1 +61010 chr9 HAVANA gene 98943179 99070792 6653.0 + 0 ENSG00000204291.10 protein_coding COL15A1 2 OTTHUMG00000020351.5 +61011 chr9 ENSEMBL gene 99145840 99145966 127.0 - 0 ENSG00000252942.1 rRNA_pseudogene RNA5SP290 3 +61012 chr9 HAVANA gene 99104038 99154192 6844.0 + 0 ENSG00000106799.12 protein_coding TGFBR1 2 OTTHUMG00000020353.6 +61013 chr9 HAVANA gene 99183373 99184891 439.0 + 0 ENSG00000227269.1 lincRNA AL162427.1 1 OTTHUMG00000020352.1 +61014 chr9 ENSEMBL gene 99185587 99185866 280.0 - 0 ENSG00000240235.3 misc_RNA RN7SL794P 3 +61015 chr9 HAVANA gene 99216426 99221956 2983.0 - 0 ENSG00000119523.9 protein_coding ALG2 2 OTTHUMG00000020355.5 +61016 chr9 HAVANA gene 99222064 99230615 1190.0 + 0 ENSG00000106803.9 protein_coding SEC61B 2 OTTHUMG00000020354.2 +61017 chr9 ENSEMBL gene 99284022 99284373 352.0 + 0 ENSG00000222337.1 misc_RNA RN7SKP225 3 +61018 chr9 HAVANA gene 99305176 99306611 1436.0 + 0 ENSG00000255815.3 processed_pseudogene KRT8P11 1 OTTHUMG00000020356.2 pseudo_consens +61019 chr9 ENSEMBL gene 99357827 99357957 131.0 + 0 ENSG00000277828.1 misc_RNA AL137067.2 3 +61020 chr9 ENSEMBL gene 99368447 99368566 120.0 + 0 ENSG00000277465.1 misc_RNA AL137067.1 3 +61021 chr9 HAVANA gene 99355337 99377240 5073.0 - 0 ENSG00000271086.6 lincRNA NAMA 2 OTTHUMG00000185286.2 +61022 chr9 HAVANA gene 99531696 99536924 419.0 + 0 ENSG00000234860.1 lincRNA AL162394.1 1 OTTHUMG00000020357.1 +61023 chr9 HAVANA gene 99585786 99819889 1544.0 - 0 ENSG00000237461.1 lincRNA AL359710.1 2 OTTHUMG00000020358.1 +61024 chr9 HAVANA gene 99821855 99866891 6314.0 + 0 ENSG00000119508.17 protein_coding NR4A3 2 OTTHUMG00000021030.2 +61025 chr9 HAVANA gene 99886322 99906601 548.0 - 0 ENSG00000255145.2 antisense STX17-AS1 1 OTTHUMG00000166238.2 +61026 chr9 HAVANA gene 99915077 99929896 336.0 - 0 ENSG00000254571.1 antisense AL358937.1 2 OTTHUMG00000166239.1 +61027 chr9 HAVANA gene 99906633 99970341 4740.0 + 0 ENSG00000136874.10 protein_coding STX17 1 OTTHUMG00000020359.5 +61028 chr9 HAVANA gene 99998301 99999069 769.0 - 0 ENSG00000234709.2 transcribed_processed_pseudogene UPF3AP3 1 OTTHUMG00000020360.2 pseudo_consens,overlapping_locus +61029 chr9 HAVANA gene 99979179 100099040 4854.0 - 0 ENSG00000023318.7 protein_coding ERP44 2 OTTHUMG00000020363.1 overlapping_locus +61030 chr9 ENSEMBL gene 100102559 100102839 281.0 + 0 ENSG00000239908.3 misc_RNA RN7SL75P 3 +61031 chr9 HAVANA gene 100116755 100117651 897.0 - 0 ENSG00000238172.2 processed_pseudogene RPS2P35 1 OTTHUMG00000020361.2 pseudo_consens +61032 chr9 HAVANA gene 100120435 100120900 466.0 - 0 ENSG00000270995.1 processed_pseudogene AL137072.1 1 OTTHUMG00000184655.1 pseudo_consens +61033 chr9 HAVANA gene 100175178 100176054 877.0 + 0 ENSG00000231697.3 transcribed_processed_pseudogene NANOGP5 1 OTTHUMG00000020362.3 pseudo_consens,overlapping_locus +61034 chr9 HAVANA gene 100099256 100301000 5943.0 + 0 ENSG00000119509.12 protein_coding INVS 2 OTTHUMG00000020364.4 ncRNA_host,overlapping_locus +61035 chr9 HAVANA gene 100302077 100352939 7261.0 - 0 ENSG00000136891.13 protein_coding TEX10 2 OTTHUMG00000020366.2 +61036 chr9 HAVANA gene 100427156 100451711 3253.0 + 0 ENSG00000066697.14 protein_coding MSANTD3 2 OTTHUMG00000020365.3 overlapping_locus +61037 chr9 HAVANA gene 100473113 100577636 2611.0 + 0 ENSG00000241697.4 protein_coding TMEFF1 2 OTTHUMG00000020367.1 overlapping_locus +61038 chr9 HAVANA gene 100442271 100577636 2069.0 + 0 ENSG00000251349.3 protein_coding MSANTD3-TMEFF1 2 OTTHUMG00000161540.2 overlapping_locus +61039 chr9 ENSEMBL gene 100581079 100581379 301.0 - 0 ENSG00000200966.1 misc_RNA RN7SKP87 3 +61040 chr9 HAVANA gene 100578079 100587906 2615.0 + 0 ENSG00000170681.6 protein_coding CAVIN4 2 OTTHUMG00000020368.3 +61041 chr9 HAVANA gene 100731240 100732355 1116.0 + 0 ENSG00000237999.2 processed_pseudogene ACTG1P19 1 OTTHUMG00000020369.2 pseudo_consens +61042 chr9 HAVANA gene 100912320 100912741 422.0 + 0 ENSG00000230161.1 processed_pseudogene AL162395.1 2 OTTHUMG00000020370.1 +61043 chr9 HAVANA gene 100975668 100976682 1015.0 + 0 ENSG00000229541.2 processed_pseudogene GAPDHP26 1 OTTHUMG00000020371.2 pseudo_consens +61044 chr9 HAVANA gene 101125436 101125921 486.0 - 0 ENSG00000238143.1 processed_pseudogene AL161631.1 1 OTTHUMG00000020372.1 pseudo_consens +61045 chr9 ENSEMBL gene 101322477 101322533 57.0 + 0 ENSG00000253041.1 snoRNA RF00322 3 +61046 chr9 HAVANA gene 101028709 101325135 3669.0 + 0 ENSG00000148123.14 protein_coding PLPPR1 2 OTTHUMG00000020373.3 ncRNA_host +61047 chr9 HAVANA gene 101334084 101339347 1225.0 - 0 ENSG00000227411.1 unitary_pseudogene ACNATP 2 OTTHUMG00000020374.1 +61048 chr9 HAVANA gene 101356466 101356844 379.0 - 0 ENSG00000236763.2 processed_pseudogene TRMT112P4 1 OTTHUMG00000020375.2 pseudo_consens +61049 chr9 HAVANA gene 101358932 101361242 1580.0 + 0 ENSG00000230328.2 processed_pseudogene AL359893.1 2 OTTHUMG00000020376.2 +61050 chr9 HAVANA gene 101375344 101376603 921.0 - 0 ENSG00000234502.2 processed_pseudogene FYTTD1P1 1 OTTHUMG00000020379.2 pseudo_consens +61051 chr9 HAVANA gene 101360417 101383519 3389.0 - 0 ENSG00000136881.11 protein_coding BAAT 2 OTTHUMG00000020377.1 +61052 chr9 HAVANA gene 101387633 101398614 3332.0 - 0 ENSG00000136897.7 protein_coding MRPL50 2 OTTHUMG00000020384.1 +61053 chr9 HAVANA gene 101398873 101410660 3433.0 + 0 ENSG00000136870.10 protein_coding ZNF189 2 OTTHUMG00000020383.2 +61054 chr9 HAVANA gene 101420578 101449664 3935.0 - 0 ENSG00000136872.18 protein_coding ALDOB 2 OTTHUMG00000020378.7 +61055 chr9 HAVANA gene 101449801 101449933 133.0 + 0 ENSG00000270982.1 processed_pseudogene AL353621.2 1 OTTHUMG00000184706.1 pseudo_consens +61056 chr9 HAVANA gene 101468439 101481502 860.0 + 0 ENSG00000225376.5 antisense TMEM246-AS1 2 OTTHUMG00000020380.1 +61057 chr9 HAVANA gene 101501643 101501885 243.0 - 0 ENSG00000233055.1 processed_pseudogene AL353621.1 1 OTTHUMG00000020382.1 pseudo_consens,overlapping_locus +61058 chr9 HAVANA gene 101473171 101533537 5568.0 - 0 ENSG00000165152.8 protein_coding TMEM246 2 OTTHUMG00000020381.1 overlapping_locus +61059 chr9 HAVANA gene 101533851 101563344 4694.0 + 0 ENSG00000155827.11 protein_coding RNF20 2 OTTHUMG00000020385.4 +61060 chr9 HAVANA gene 101591615 101595021 3407.0 - 0 ENSG00000188386.6 protein_coding PPP3R2 2 OTTHUMG00000020386.2 overlapping_locus,retrogene +61061 chr9 HAVANA gene 101569353 101738580 8121.0 - 0 ENSG00000198785.4 protein_coding GRIN3A 2 OTTHUMG00000020387.1 overlapping_locus +61062 chr9 HAVANA gene 101793454 101793756 303.0 - 0 ENSG00000230302.2 processed_pseudogene MTND3P4 2 OTTHUMG00000020389.2 +61063 chr9 HAVANA gene 102055252 102055741 490.0 - 0 ENSG00000230418.2 processed_pseudogene ARL2BPP7 1 OTTHUMG00000020390.2 pseudo_consens +61064 chr9 ENSEMBL gene 102256604 102256710 107.0 + 0 ENSG00000238882.1 snRNA RNU6-329P 3 +61065 chr9 HAVANA gene 102515204 102518308 3105.0 + 0 ENSG00000235901.2 processed_pseudogene AL442644.1 1 OTTHUMG00000020392.2 pseudo_consens +61066 chr9 HAVANA gene 102611162 102612155 837.0 - 0 ENSG00000232242.2 processed_pseudogene ZYG11AP1 1 OTTHUMG00000020394.2 pseudo_consens +61067 chr9 HAVANA gene 102519636 102657514 590.0 + 0 ENSG00000204250.3 lincRNA LINC00587 2 OTTHUMG00000020393.1 +61068 chr9 HAVANA gene 102922574 102923244 671.0 + 0 ENSG00000234269.2 processed_pseudogene AL365396.1 2 OTTHUMG00000020395.2 +61069 chr9 HAVANA gene 102995311 103018488 2276.0 + 0 ENSG00000155833.14 protein_coding CYLC2 1 OTTHUMG00000020396.5 +61070 chr9 HAVANA gene 103065416 103065598 183.0 + 0 ENSG00000229830.1 processed_pseudogene AL589823.1 2 OTTHUMG00000020397.1 +61071 chr9 HAVANA gene 103140523 103325034 4421.0 - 0 ENSG00000225564.6 lincRNA LINC01492 2 OTTHUMG00000020399.3 +61072 chr9 HAVANA gene 103361952 103429892 526.0 - 0 ENSG00000226566.2 lincRNA AL390962.1 1 OTTHUMG00000020400.2 +61073 chr9 ENSEMBL gene 103689473 103689577 105.0 - 0 ENSG00000253031.1 rRNA_pseudogene RNA5SP291 3 +61074 chr9 HAVANA gene 103999755 104000469 390.0 + 0 ENSG00000285483.1 lincRNA AL590381.1 2 OTTHUMG00000192363.1 +61075 chr9 HAVANA gene 104080024 104093073 7619.0 - 0 ENSG00000270332.1 lincRNA SMC2-AS1 2 OTTHUMG00000185235.1 +61076 chr9 HAVANA gene 104094260 104141417 6468.0 + 0 ENSG00000136824.18 protein_coding SMC2 2 OTTHUMG00000020401.5 +61077 chr9 HAVANA gene 104270228 104286955 3794.0 + 0 ENSG00000242111.1 transcribed_unitary_pseudogene TOPORSLP 2 OTTHUMG00000020402.2 +61078 chr9 HAVANA gene 104328320 104329396 1077.0 - 0 ENSG00000203396.3 processed_pseudogene AL512646.1 1 OTTHUMG00000020403.2 pseudo_consens +61079 chr9 HAVANA gene 104504263 104505222 960.0 + 0 ENSG00000186881.3 protein_coding OR13F1 2 OTTHUMG00000020404.2 +61080 chr9 HAVANA gene 104526253 104527209 957.0 - 0 ENSG00000148136.5 protein_coding OR13C4 2 OTTHUMG00000020407.2 +61081 chr9 HAVANA gene 104535749 104536856 1108.0 - 0 ENSG00000204246.3 protein_coding OR13C3 2 OTTHUMG00000020406.3 +61082 chr9 HAVANA gene 104520829 104537180 1602.0 + 0 ENSG00000283001.1 antisense AL450426.1 2 OTTHUMG00000191562.1 +61083 chr9 HAVANA gene 104569168 104570130 963.0 + 0 ENSG00000186943.1 protein_coding OR13C8 2 OTTHUMG00000020409.2 +61084 chr9 HAVANA gene 104590044 104590950 907.0 + 0 ENSG00000237443.1 unprocessed_pseudogene OR13D2P 2 OTTHUMG00000020405.1 +61085 chr9 HAVANA gene 104598457 104599413 957.0 - 0 ENSG00000277556.1 protein_coding OR13C5 2 OTTHUMG00000020408.3 +61086 chr9 HAVANA gene 104604671 104605627 957.0 - 0 ENSG00000276119.1 protein_coding OR13C2 2 OTTHUMG00000020415.3 +61087 chr9 HAVANA gene 104617248 104618204 957.0 - 0 ENSG00000136839.1 protein_coding OR13C9 2 OTTHUMG00000020416.2 +61088 chr9 HAVANA gene 104629754 104631017 1264.0 + 0 ENSG00000273423.1 unprocessed_pseudogene OR13I1P 2 OTTHUMG00000020410.2 +61089 chr9 HAVANA gene 104655363 104659055 2919.0 - 0 ENSG00000235248.3 transcribed_unprocessed_pseudogene OR13C1P 2 OTTHUMG00000185902.2 +61090 chr9 HAVANA gene 104694379 104695485 1107.0 + 0 ENSG00000179055.7 protein_coding OR13D1 2 OTTHUMG00000020412.3 +61091 chr9 HAVANA gene 104722335 104723271 937.0 + 0 ENSG00000188712.4 unprocessed_pseudogene OR13D3P 2 OTTHUMG00000020411.2 +61092 chr9 HAVANA gene 104747688 104760122 2585.0 + 0 ENSG00000136783.9 protein_coding NIPSNAP3A 2 OTTHUMG00000020413.1 +61093 chr9 HAVANA gene 104764157 104777457 2178.0 + 0 ENSG00000165028.11 protein_coding NIPSNAP3B 2 OTTHUMG00000020414.3 +61094 chr9 HAVANA gene 104781002 104928237 11350.0 - 0 ENSG00000165029.15 protein_coding ABCA1 2 OTTHUMG00000020417.1 +61095 chr9 HAVANA gene 104927553 104928892 469.0 + 0 ENSG00000226334.1 antisense AL359182.1 2 OTTHUMG00000020418.1 +61096 chr9 HAVANA gene 104990796 104991781 606.0 - 0 ENSG00000230013.1 lincRNA AL359182.2 1 OTTHUMG00000020419.1 +61097 chr9 ENSEMBL gene 105096756 105097061 306.0 + 0 ENSG00000201583.1 misc_RNA RN7SKP191 3 +61098 chr9 HAVANA gene 105244622 105439171 12172.0 + 0 ENSG00000070214.15 protein_coding SLC44A1 2 OTTHUMG00000020421.5 +61099 chr9 HAVANA gene 105520128 105526359 6232.0 + 0 ENSG00000229419.1 processed_pseudogene RALGAPA1P1 1 OTTHUMG00000020427.1 pseudo_consens,overlapping_locus +61100 chr9 HAVANA gene 105447796 105552433 9877.0 + 0 ENSG00000106701.11 protein_coding FSD1L 1 OTTHUMG00000020426.9 overlapping_locus +61101 chr9 HAVANA gene 105554035 105558029 631.0 - 0 ENSG00000228317.1 antisense AL158070.1 2 OTTHUMG00000020423.1 +61102 chr9 HAVANA gene 105558130 105641118 8032.0 + 0 ENSG00000106692.14 protein_coding FKTN 1 OTTHUMG00000020425.7 +61103 chr9 HAVANA gene 105656369 105657989 1621.0 + 0 ENSG00000279609.1 TEC AL158070.2 2 OTTHUMG00000175689.1 +61104 chr9 HAVANA gene 105662457 105663112 656.0 + 0 ENSG00000186051.6 protein_coding TAL2 2 OTTHUMG00000020424.2 +61105 chr9 HAVANA gene 105710290 105710781 492.0 - 0 ENSG00000228366.1 processed_pseudogene AL592437.1 1 OTTHUMG00000020428.1 pseudo_consens +61106 chr9 HAVANA gene 105758164 105760755 2434.0 + 0 ENSG00000232486.1 processed_pseudogene AL592437.2 1 OTTHUMG00000020430.1 pseudo_consens,overlapping_locus +61107 chr9 HAVANA gene 105694544 105776612 4511.0 + 0 ENSG00000095209.11 protein_coding TMEM38B 2 OTTHUMG00000020429.6 overlapping_locus +61108 chr9 HAVANA gene 105849710 105851425 1353.0 + 0 ENSG00000228948.2 processed_pseudogene SLC25A6P5 1 OTTHUMG00000020431.2 pseudo_consens +61109 chr9 HAVANA gene 106061354 106064825 456.0 - 0 ENSG00000225002.2 lincRNA AL732323.1 2 OTTHUMG00000020432.2 +61110 chr9 HAVANA gene 106584142 106591952 371.0 - 0 ENSG00000229297.1 lincRNA AL451140.1 2 OTTHUMG00000020437.1 +61111 chr9 ENSEMBL gene 106600928 106601022 95.0 + 0 ENSG00000277889.1 miRNA MIR8081 3 +61112 chr9 HAVANA gene 106615078 106615806 597.0 - 0 ENSG00000237062.1 lincRNA AL512649.2 2 OTTHUMG00000020434.1 +61113 chr9 ENSEMBL gene 106679977 106680329 353.0 + 0 ENSG00000200131.1 misc_RNA RN7SKP77 3 +61114 chr9 HAVANA gene 106664754 106702662 686.0 + 0 ENSG00000234229.8 lincRNA LINC01505 2 OTTHUMG00000020435.3 ncRNA_host +61115 chr9 HAVANA gene 106722350 106722930 581.0 + 0 ENSG00000228143.2 processed_pseudogene AL512649.1 1 OTTHUMG00000020436.1 pseudo_consens +61116 chr9 HAVANA gene 105993310 106740875 10944.0 + 0 ENSG00000234323.6 lincRNA LINC01505 2 OTTHUMG00000020433.2 ncRNA_host +61117 chr9 ENSEMBL gene 106843749 106843866 118.0 - 0 ENSG00000212276.1 rRNA_pseudogene RNA5SP292 3 +61118 chr9 HAVANA gene 106978776 106979554 779.0 - 0 ENSG00000231562.1 processed_pseudogene AL512593.1 1 OTTHUMG00000020439.2 pseudo_consens,overlapping_locus +61119 chr9 HAVANA gene 106863097 107013634 12259.0 + 0 ENSG00000148143.12 protein_coding ZNF462 1 OTTHUMG00000020438.4 overlapping_locus +61120 chr9 HAVANA gene 106974833 107102988 2602.0 - 0 ENSG00000230782.1 antisense AL807761.4 2 OTTHUMG00000020444.1 overlapping_locus +61121 chr9 HAVANA gene 107115784 107115954 171.0 + 0 ENSG00000223615.2 processed_pseudogene AL807761.1 2 OTTHUMG00000020441.2 +61122 chr9 HAVANA gene 107116829 107117557 729.0 + 0 ENSG00000225531.1 processed_pseudogene AL807761.2 1 OTTHUMG00000020442.1 pseudo_consens +61123 chr9 HAVANA gene 107117459 107121705 329.0 - 0 ENSG00000226047.1 lincRNA AL807761.3 2 OTTHUMG00000020443.1 +61124 chr9 HAVANA gene 107169569 107171148 1580.0 - 0 ENSG00000226535.1 processed_pseudogene AL445487.1 1 OTTHUMG00000020445.1 pseudo_consens +61125 chr9 HAVANA gene 107283137 107332194 4615.0 + 0 ENSG00000119318.12 protein_coding RAD23B 2 OTTHUMG00000020446.2 +61126 chr9 HAVANA gene 107420284 107430802 449.0 - 0 ENSG00000226825.1 lincRNA LINC01509 2 OTTHUMG00000020447.1 +61127 chr9 HAVANA gene 107458038 107458306 269.0 - 0 ENSG00000213558.3 processed_pseudogene HMGN2P32 2 OTTHUMG00000020448.1 +61128 chr9 ENSEMBL gene 107475036 107475139 104.0 - 0 ENSG00000199905.1 snRNA RNU6-492P 3 +61129 chr9 HAVANA gene 107484852 107490482 3659.0 - 0 ENSG00000136826.14 protein_coding KLF4 2 OTTHUMG00000020449.3 +61130 chr9 HAVANA gene 107534390 107535162 441.0 + 0 ENSG00000236005.1 processed_pseudogene AL389915.1 1 OTTHUMG00000020450.1 pseudo_consens +61131 chr9 HAVANA gene 107543151 107543616 466.0 - 0 ENSG00000227350.1 processed_pseudogene PPIAP88 1 OTTHUMG00000020451.1 pseudo_consens +61132 chr9 ENSEMBL gene 107663140 107663246 107.0 - 0 ENSG00000202308.1 snRNA RNU6-996P 3 +61133 chr9 ENSEMBL gene 107797744 107797847 104.0 - 0 ENSG00000222558.1 snRNA RNU6-1064P 3 +61134 chr9 ENSEMBL gene 107811616 107811914 299.0 - 0 ENSG00000244104.3 misc_RNA RN7SL659P 3 +61135 chr9 HAVANA gene 107834509 107834829 321.0 - 0 ENSG00000231293.1 processed_pseudogene RPL36AP6 1 OTTHUMG00000020453.2 pseudo_consens +61136 chr9 HAVANA gene 107853783 107854258 177.0 - 0 ENSG00000233727.1 processed_pseudogene AL162389.1 2 OTTHUMG00000020452.1 +61137 chr9 ENSEMBL gene 107918866 107918978 113.0 - 0 ENSG00000222459.1 rRNA_pseudogene RNA5SP293 3 +61138 chr9 HAVANA gene 107963703 107964045 343.0 - 0 ENSG00000236783.1 processed_pseudogene RPS15AP27 1 OTTHUMG00000020456.1 pseudo_consens +61139 chr9 HAVANA gene 108040213 108040592 380.0 + 0 ENSG00000213557.4 processed_pseudogene AC068050.1 1 OTTHUMG00000020454.1 pseudo_consens +61140 chr9 HAVANA gene 108097432 108097851 420.0 - 0 ENSG00000237360.2 processed_pseudogene CHCHD4P2 1 OTTHUMG00000020455.2 pseudo_consens +61141 chr9 HAVANA gene 108252154 108254820 224.0 - 0 ENSG00000230030.1 lincRNA AL353742.1 2 OTTHUMG00000020457.1 +61142 chr9 HAVANA gene 108626833 108627150 318.0 + 0 ENSG00000169253.3 processed_pseudogene AL669983.1 1 OTTHUMG00000020458.2 pseudo_consens +61143 chr9 HAVANA gene 108701370 108703092 400.0 - 0 ENSG00000231678.2 lincRNA AL358779.1 2 OTTHUMG00000020459.2 +61144 chr9 HAVANA gene 108821697 108822004 308.0 + 0 ENSG00000231810.1 processed_pseudogene RPL36AP35 2 OTTHUMG00000020460.1 +61145 chr9 HAVANA gene 108836333 108836597 265.0 + 0 ENSG00000213556.3 processed_pseudogene AL359692.1 1 OTTHUMG00000020463.1 pseudo_consens +61146 chr9 HAVANA gene 108854589 108856967 2379.0 - 0 ENSG00000148156.7 protein_coding ACTL7B 2 OTTHUMG00000020462.2 retrogene +61147 chr9 HAVANA gene 108862266 108863759 1494.0 + 0 ENSG00000187003.6 protein_coding ACTL7A 2 OTTHUMG00000020461.2 retrogene +61148 chr9 HAVANA gene 108867517 108934116 6048.0 - 0 ENSG00000070061.14 protein_coding ELP1 2 OTTHUMG00000020465.8 +61149 chr9 HAVANA gene 108934181 108950744 2758.0 + 0 ENSG00000119328.11 protein_coding FAM206A 2 OTTHUMG00000020467.3 +61150 chr9 HAVANA gene 108942569 109013529 3131.0 - 0 ENSG00000119326.14 protein_coding CTNNAL1 2 OTTHUMG00000020466.3 +61151 chr9 ENSEMBL gene 109042386 109042487 102.0 - 0 ENSG00000199331.1 misc_RNA RF00019 3 +61152 chr9 ENSEMBL gene 109046229 109046298 70.0 - 0 ENSG00000207698.1 miRNA MIR32 3 +61153 chr9 HAVANA gene 109015152 109119945 9484.0 - 0 ENSG00000106771.12 protein_coding TMEM245 2 OTTHUMG00000020469.3 ncRNA_host +61154 chr9 HAVANA gene 109130293 109167295 15559.0 - 0 ENSG00000260230.3 protein_coding FRRS1L 2 OTTHUMG00000020468.3 +61155 chr9 ENSEMBL gene 109196201 109196309 109.0 - 0 ENSG00000200106.1 snRNA RNU6-984P 3 +61156 chr9 HAVANA gene 109300186 109301172 648.0 + 0 ENSG00000237124.1 unprocessed_pseudogene MTND2P11 2 OTTHUMG00000020471.1 +61157 chr9 HAVANA gene 109171975 109320964 7879.0 - 0 ENSG00000095203.14 protein_coding EPB41L4B 2 OTTHUMG00000020470.2 ncRNA_host +61158 chr9 ENSEMBL gene 109324685 109324796 112.0 + 0 ENSG00000207329.1 misc_RNA RF00019 3 +61159 chr9 HAVANA gene 109375466 109498313 9995.0 - 0 ENSG00000070159.13 protein_coding PTPN3 2 OTTHUMG00000020475.4 +61160 chr9 ENSEMBL gene 109511475 109511545 71.0 - 0 ENSG00000263861.1 miRNA MIR3927 3 +61161 chr9 HAVANA gene 109532830 109534332 1002.0 - 0 ENSG00000213539.4 processed_pseudogene YBX1P6 1 OTTHUMG00000020474.2 pseudo_consens +61162 chr9 HAVANA gene 109760360 109772043 478.0 - 0 ENSG00000232939.1 antisense AL158829.1 1 OTTHUMG00000020476.1 +61163 chr9 HAVANA gene 109640788 109946703 4943.0 + 0 ENSG00000243444.7 protein_coding PALM2 2 OTTHUMG00000020479.4 overlapping_locus +61164 chr9 HAVANA gene 110024881 110025358 478.0 - 0 ENSG00000228053.1 processed_pseudogene AL158823.1 1 OTTHUMG00000020477.1 pseudo_consens +61165 chr9 HAVANA gene 110048598 110172512 7862.0 + 0 ENSG00000241978.9 protein_coding AKAP2 2 OTTHUMG00000156811.7 overlapping_locus +61166 chr9 HAVANA gene 109780309 110172512 8203.0 + 0 ENSG00000157654.17 protein_coding PALM2-AKAP2 2 OTTHUMG00000156812.3 overlapping_locus +61167 chr9 HAVANA gene 110190048 110208189 2947.0 - 0 ENSG00000188959.9 protein_coding C9orf152 2 OTTHUMG00000020478.2 +61168 chr9 HAVANA gene 110243811 110256640 1142.0 - 0 ENSG00000136810.12 protein_coding TXN 2 OTTHUMG00000020480.1 +61169 chr9 HAVANA gene 110303521 110337884 2135.0 - 0 ENSG00000204193.10 protein_coding TXNDC8 1 OTTHUMG00000020481.3 +61170 chr9 ENSEMBL gene 110369592 110369698 107.0 - 0 ENSG00000206658.1 snRNA RNU6-1039P 3 +61171 chr9 HAVANA gene 110365251 110579880 14190.0 - 0 ENSG00000165124.17 protein_coding SVEP1 2 OTTHUMG00000020482.2 ncRNA_host +61172 chr9 HAVANA gene 110599475 110605219 635.0 + 0 ENSG00000232896.1 lincRNA AL592463.1 1 OTTHUMG00000020483.1 +61173 chr9 HAVANA gene 110727456 110727679 224.0 - 0 ENSG00000223918.1 processed_pseudogene AL513328.1 1 OTTHUMG00000020484.1 pseudo_consens +61174 chr9 HAVANA gene 110668771 110801620 4246.0 + 0 ENSG00000030304.13 protein_coding MUSK 1 OTTHUMG00000020485.6 +61175 chr9 ENSEMBL gene 110903337 110903445 109.0 + 0 ENSG00000206923.1 snRNA RNU6-432P 3 +61176 chr9 ENSEMBL gene 110934406 110934507 102.0 + 0 ENSG00000207401.1 misc_RNA RF00019 3 +61177 chr9 HAVANA gene 110873263 111038458 4159.0 - 0 ENSG00000198121.13 protein_coding LPAR1 2 OTTHUMG00000020486.3 +61178 chr9 ENSEMBL gene 111097325 111097413 89.0 - 0 ENSG00000212409.1 misc_RNA RNY4P18 3 +61179 chr9 ENSEMBL gene 111271156 111271214 59.0 - 0 ENSG00000274263.1 miRNA MIR7702 3 +61180 chr9 HAVANA gene 111139246 111284836 744.0 - 0 ENSG00000227531.1 lincRNA AL162414.1 1 OTTHUMG00000020487.1 ncRNA_host +61181 chr9 HAVANA gene 111327483 111330183 1116.0 - 0 ENSG00000171133.3 protein_coding OR2K2 2 OTTHUMG00000020488.3 +61182 chr9 ENSEMBL gene 111411644 111411742 99.0 - 0 ENSG00000223238.1 rRNA_pseudogene RNA5SP294 3 +61183 chr9 HAVANA gene 111360692 111484745 8449.0 - 0 ENSG00000136813.14 protein_coding ECPAS 2 OTTHUMG00000020489.5 +61184 chr9 HAVANA gene 111574192 111575427 302.0 + 0 ENSG00000224644.1 antisense AL135787.1 2 OTTHUMG00000020492.1 overlapping_locus +61185 chr9 HAVANA gene 111525159 111577844 5738.0 + 0 ENSG00000173258.12 protein_coding ZNF483 2 OTTHUMG00000020490.1 overlapping_locus +61186 chr9 HAVANA gene 111549722 111599893 3760.0 - 0 ENSG00000106853.19 protein_coding PTGR1 2 OTTHUMG00000020493.9 +61187 chr9 HAVANA gene 111602831 111631289 2271.0 - 0 ENSG00000204173.11 transcribed_unprocessed_pseudogene LRRC37A5P 2 OTTHUMG00000020494.4 +61188 chr9 HAVANA gene 111631352 111654351 2586.0 + 0 ENSG00000059769.19 protein_coding DNAJC25 2 OTTHUMG00000020491.6 overlapping_locus +61189 chr9 HAVANA gene 111631386 111670229 1448.0 + 0 ENSG00000244115.1 protein_coding DNAJC25-GNG10 2 OTTHUMG00000150303.1 overlapping_locus +61190 chr9 HAVANA gene 111661335 111670246 1491.0 + 0 ENSG00000242616.3 protein_coding GNG10 2 OTTHUMG00000157193.2 overlapping_locus +61191 chr9 HAVANA gene 111686173 111795008 6276.0 - 0 ENSG00000165181.16 protein_coding C9orf84 1 OTTHUMG00000020495.5 +61192 chr9 HAVANA gene 111802980 111803435 413.0 + 0 ENSG00000224067.2 processed_pseudogene AL354877.1 1 OTTHUMG00000020496.2 pseudo_consens +61193 chr9 ENSEMBL gene 111839828 111839934 107.0 + 0 ENSG00000206907.1 snRNA RNU6-1013P 3 +61194 chr9 ENSEMBL gene 111932100 111932169 70.0 + 0 ENSG00000266315.1 miRNA MIR4668 3 +61195 chr9 HAVANA gene 111896766 111935369 4615.0 + 0 ENSG00000148154.9 protein_coding UGCG 2 OTTHUMG00000020498.1 ncRNA_host +61196 chr9 ENSEMBL gene 111996635 111996739 105.0 - 0 ENSG00000222356.1 snRNA RNU6-710P 3 +61197 chr9 HAVANA gene 112032555 112037730 4836.0 - 0 ENSG00000259953.1 sense_overlapping AL138756.1 2 OTTHUMG00000175583.1 +61198 chr9 ENSEMBL gene 112137797 112137900 104.0 + 0 ENSG00000222327.1 snRNA RNU6-855P 3 +61199 chr9 ENSEMBL gene 112169286 112169397 112.0 + 0 ENSG00000200261.1 misc_RNA RF00019 3 +61200 chr9 HAVANA gene 112173522 112173971 450.0 - 0 ENSG00000225513.1 processed_pseudogene AL158824.1 1 OTTHUMG00000020500.1 pseudo_consens,overlapping_locus +61201 chr9 HAVANA gene 112040785 112175408 4183.0 - 0 ENSG00000106868.16 protein_coding SUSD1 1 OTTHUMG00000020499.5 overlapping_locus +61202 chr9 ENSEMBL gene 112242550 112242839 290.0 - 0 ENSG00000242256.3 misc_RNA RN7SL57P 3 +61203 chr9 ENSEMBL gene 112252258 112252378 121.0 + 0 ENSG00000199525.1 rRNA_pseudogene RNA5SP295 3 +61204 chr9 ENSEMBL gene 112272596 112272837 242.0 - 0 ENSG00000243911.3 misc_RNA RN7SL430P 3 +61205 chr9 HAVANA gene 112280978 112281335 211.0 - 0 ENSG00000230081.2 processed_pseudogene HSPE1P28 2 OTTHUMG00000020501.2 overlapping_locus +61206 chr9 HAVANA gene 112217716 112333667 8239.0 - 0 ENSG00000119314.15 protein_coding PTBP3 2 OTTHUMG00000020503.3 ncRNA_host,overlapping_locus +61207 chr9 HAVANA gene 112362714 112363116 403.0 + 0 ENSG00000213529.3 processed_pseudogene AL359073.1 1 OTTHUMG00000020502.1 pseudo_consens +61208 chr9 HAVANA gene 112379937 112472410 3455.0 + 0 ENSG00000119471.14 protein_coding HSDL2 2 OTTHUMG00000020504.5 +61209 chr9 HAVANA gene 112433816 112487204 1718.0 - 0 ENSG00000230185.4 antisense C9orf147 2 OTTHUMG00000020505.1 +61210 chr9 HAVANA gene 112581779 112582590 260.0 - 0 ENSG00000250068.1 unprocessed_pseudogene AL445187.1 2 OTTHUMG00000020507.1 +61211 chr9 HAVANA gene 112486847 112669397 13119.0 + 0 ENSG00000165185.14 protein_coding KIAA1958 2 OTTHUMG00000020508.1 +61212 chr9 HAVANA gene 112683926 112718236 4423.0 - 0 ENSG00000148153.13 protein_coding INIP 2 OTTHUMG00000020509.3 +61213 chr9 HAVANA gene 112748902 112750456 420.0 - 0 ENSG00000226609.1 antisense AL390067.1 2 OTTHUMG00000020510.1 +61214 chr9 HAVANA gene 112750838 112881671 11578.0 + 0 ENSG00000148158.16 protein_coding SNX30 2 OTTHUMG00000020512.2 +61215 chr9 HAVANA gene 112885158 112885767 610.0 + 0 ENSG00000271631.1 antisense AL139041.1 2 OTTHUMG00000184199.1 +61216 chr9 HAVANA gene 112878920 112890913 2502.0 - 0 ENSG00000119457.7 protein_coding SLC46A2 2 OTTHUMG00000020513.3 +61217 chr9 HAVANA gene 112959134 112962261 566.0 - 0 ENSG00000237906.1 transcribed_unprocessed_pseudogene MUPP 2 OTTHUMG00000020511.1 overlapping_locus +61218 chr9 HAVANA gene 112957722 113012227 5626.0 - 0 ENSG00000228623.6 transcribed_unprocessed_pseudogene ZNF883 2 OTTHUMG00000020514.2 overlapping_locus +61219 chr9 ENSEMBL gene 112997120 113050043 2051.0 - 0 ENSG00000285447.1 protein_coding ZNF883 3 +61220 chr9 HAVANA gene 113038380 113056759 6354.0 - 0 ENSG00000136866.13 protein_coding ZFP37 2 OTTHUMG00000021019.2 +61221 chr9 HAVANA gene 113060086 113060507 422.0 - 0 ENSG00000285115.1 unprocessed_pseudogene AL162588.1 2 OTTHUMG00000192495.1 +61222 chr9 HAVANA gene 113065535 113065956 422.0 - 0 ENSG00000284763.1 unprocessed_pseudogene AL449105.1 2 OTTHUMG00000192496.1 +61223 chr9 HAVANA gene 113070983 113071404 422.0 - 0 ENSG00000284962.1 unprocessed_pseudogene AL449105.3 2 OTTHUMG00000192497.1 +61224 chr9 HAVANA gene 113076429 113076850 422.0 - 0 ENSG00000285076.1 unprocessed_pseudogene AL449105.4 2 OTTHUMG00000192498.1 +61225 chr9 HAVANA gene 113081871 113082292 422.0 - 0 ENSG00000284867.1 unprocessed_pseudogene AL449105.2 2 OTTHUMG00000192499.1 +61226 chr9 HAVANA gene 113087317 113087738 422.0 - 0 ENSG00000285370.1 unprocessed_pseudogene AL449105.5 2 OTTHUMG00000192500.1 +61227 chr9 HAVANA gene 113103338 113111500 7407.0 - 0 ENSG00000225684.3 lincRNA FAM225B 2 OTTHUMG00000020515.3 +61228 chr9 HAVANA gene 113113073 113119928 6100.0 + 0 ENSG00000231528.2 lincRNA FAM225A 2 OTTHUMG00000020516.3 +61229 chr9 HAVANA gene 113150942 113164137 2504.0 + 0 ENSG00000136867.10 protein_coding SLC31A2 2 OTTHUMG00000021037.2 +61230 chr9 HAVANA gene 113161006 113221361 11060.0 - 0 ENSG00000119321.8 protein_coding FKBP15 2 OTTHUMG00000020518.2 +61231 chr9 HAVANA gene 113221562 113264492 5127.0 + 0 ENSG00000136868.10 protein_coding SLC31A1 2 OTTHUMG00000020519.2 +61232 chr9 HAVANA gene 113255835 113275589 1175.0 - 0 ENSG00000176386.8 protein_coding CDC26 2 OTTHUMG00000020521.1 +61233 chr9 HAVANA gene 113275343 113292905 3613.0 + 0 ENSG00000136875.12 protein_coding PRPF4 2 OTTHUMG00000020517.2 +61234 chr9 HAVANA gene 113297093 113303376 3646.0 - 0 ENSG00000165188.13 protein_coding RNF183 2 OTTHUMG00000020520.3 +61235 chr9 HAVANA gene 113313222 113340298 4933.0 - 0 ENSG00000148225.15 protein_coding WDR31 2 OTTHUMG00000020525.5 +61236 chr9 HAVANA gene 113349541 113371233 2339.0 + 0 ENSG00000119411.10 protein_coding BSPRY 2 OTTHUMG00000021006.2 +61237 chr9 HAVANA gene 113373419 113376999 2105.0 - 0 ENSG00000119431.9 protein_coding HDHD3 2 OTTHUMG00000020524.1 +61238 chr9 HAVANA gene 113386317 113401333 4983.0 - 0 ENSG00000148218.15 protein_coding ALAD 2 OTTHUMG00000020522.5 +61239 chr9 HAVANA gene 113407235 113410672 2604.0 - 0 ENSG00000148229.12 protein_coding POLE3 2 OTTHUMG00000020523.2 +61240 chr9 HAVANA gene 113410054 113429684 2290.0 + 0 ENSG00000157653.11 protein_coding C9orf43 2 OTTHUMG00000020526.2 +61241 chr9 HAVANA gene 113570190 113590019 395.0 - 0 ENSG00000237073.1 antisense AL162727.2 2 OTTHUMG00000020527.1 +61242 chr9 HAVANA gene 113444731 113597743 13793.0 + 0 ENSG00000138835.22 protein_coding RGS3 1 OTTHUMG00000021048.9 +61243 chr9 HAVANA gene 113614589 113617375 2787.0 - 0 ENSG00000282897.1 TEC AL162727.3 2 OTTHUMG00000191471.1 +61244 chr9 HAVANA gene 113619228 113622634 3043.0 + 0 ENSG00000233817.1 lincRNA AL162727.1 2 OTTHUMG00000020528.1 +61245 chr9 HAVANA gene 113650956 113682855 1223.0 + 0 ENSG00000227482.1 lincRNA AL157702.2 2 OTTHUMG00000020530.1 +61246 chr9 HAVANA gene 113758994 113759419 426.0 - 0 ENSG00000214669.3 processed_pseudogene AL157702.1 1 OTTHUMG00000020529.2 pseudo_consens +61247 chr9 HAVANA gene 113850687 113851632 946.0 - 0 ENSG00000232905.2 processed_pseudogene AL162393.1 1 OTTHUMG00000020531.2 pseudo_consens +61248 chr9 HAVANA gene 113876282 114056591 10384.0 + 0 ENSG00000157657.14 protein_coding ZNF618 2 OTTHUMG00000020532.2 +61249 chr9 HAVANA gene 114060127 114078472 2041.0 - 0 ENSG00000106927.11 protein_coding AMBP 2 OTTHUMG00000020534.4 +61250 chr9 HAVANA gene 114086126 114099291 3016.0 - 0 ENSG00000136883.14 protein_coding KIF12 2 OTTHUMG00000020533.5 +61251 chr9 ENSEMBL gene 114209434 114209529 96.0 + 0 ENSG00000207726.3 miRNA MIR455 3 +61252 chr9 HAVANA gene 114155560 114312511 13988.0 + 0 ENSG00000196739.14 protein_coding COL27A1 2 OTTHUMG00000020537.4 ncRNA_host +61253 chr9 HAVANA gene 114323056 114326475 901.0 + 0 ENSG00000229314.5 protein_coding ORM1 2 OTTHUMG00000021012.1 +61254 chr9 HAVANA gene 114329869 114333252 760.0 + 0 ENSG00000228278.3 protein_coding ORM2 2 OTTHUMG00000021014.1 +61255 chr9 HAVANA gene 114334156 114394405 10601.0 - 0 ENSG00000106948.16 protein_coding AKNA 2 OTTHUMG00000020538.2 +61256 chr9 HAVANA gene 114396724 114398503 173.0 - 0 ENSG00000235119.1 lincRNA AL138895.1 2 OTTHUMG00000020540.1 +61257 chr9 HAVANA gene 114491564 114491741 178.0 + 0 ENSG00000271214.1 processed_pseudogene AL138895.2 1 OTTHUMG00000184708.1 pseudo_consens +61258 chr9 HAVANA gene 114402080 114505450 5542.0 - 0 ENSG00000095397.13 protein_coding WHRN 2 OTTHUMG00000020539.4 +61259 chr9 HAVANA gene 114572901 114573371 471.0 + 0 ENSG00000235797.2 processed_pseudogene AL160275.2 1 OTTHUMG00000020545.2 pseudo_consens +61260 chr9 HAVANA gene 114587746 114598373 1305.0 + 0 ENSG00000136888.6 protein_coding ATP6V1G1 2 OTTHUMG00000021023.1 +61261 chr9 ENSEMBL gene 114615455 114615568 114.0 - 0 ENSG00000201749.1 misc_RNA RF00019 3 +61262 chr9 HAVANA gene 114611206 114646422 4792.0 + 0 ENSG00000157693.14 protein_coding TMEM268 2 OTTHUMG00000020541.1 +61263 chr9 HAVANA gene 114656304 114662374 576.0 - 0 ENSG00000230054.2 protein_coding TEX53 1 OTTHUMG00000020544.2 +61264 chr9 HAVANA gene 114666434 114682066 708.0 - 0 ENSG00000230601.6 protein_coding TEX48 1 OTTHUMG00000020542.2 +61265 chr9 HAVANA gene 114695922 114696315 394.0 - 0 ENSG00000230284.1 processed_pseudogene AL160275.1 1 OTTHUMG00000020543.1 pseudo_consens +61266 chr9 HAVANA gene 114774737 114775120 384.0 - 0 ENSG00000274919.1 processed_pseudogene AL390240.1 1 OTTHUMG00000187859.1 pseudo_consens +61267 chr9 HAVANA gene 114784635 114806126 7889.0 - 0 ENSG00000181634.7 protein_coding TNFSF15 2 OTTHUMG00000021011.2 +61268 chr9 HAVANA gene 114845594 114848585 2992.0 + 0 ENSG00000229817.1 processed_pseudogene AL133412.1 1 OTTHUMG00000020546.1 pseudo_consens +61269 chr9 HAVANA gene 114893343 114930595 2906.0 - 0 ENSG00000106952.7 protein_coding TNFSF8 2 OTTHUMG00000021025.1 +61270 chr9 HAVANA gene 115019578 115118257 9636.0 - 0 ENSG00000041982.15 protein_coding TNC 1 OTTHUMG00000021010.6 +61271 chr9 HAVANA gene 115119539 115138409 1525.0 - 0 ENSG00000236461.1 lincRNA AL162425.1 2 OTTHUMG00000020548.1 +61272 chr9 HAVANA gene 115252538 115254251 427.0 - 0 ENSG00000234692.1 lincRNA AL355601.1 2 OTTHUMG00000020547.1 +61273 chr9 HAVANA gene 114850968 115402644 6650.0 + 0 ENSG00000173077.15 protein_coding DEC1 2 OTTHUMG00000020549.2 +61274 chr9 ENSEMBL gene 115734392 115734491 100.0 + 0 ENSG00000274755.1 snRNA RF00004 3 +61275 chr9 HAVANA gene 115324932 115744330 2988.0 - 0 ENSG00000228714.3 antisense AL691420.1 2 OTTHUMG00000020550.3 +61276 chr9 HAVANA gene 115888169 115925207 769.0 - 0 ENSG00000204148.3 lincRNA LINC00474 2 OTTHUMG00000020551.3 +61277 chr9 HAVANA gene 116012361 116012965 509.0 + 0 ENSG00000228707.1 lincRNA AL691426.1 2 OTTHUMG00000020552.1 +61278 chr9 HAVANA gene 116285829 116288769 1854.0 - 0 ENSG00000226604.2 antisense PAPPA-AS2 2 OTTHUMG00000020554.1 overlapping_locus +61279 chr9 HAVANA gene 116288618 116318689 728.0 - 0 ENSG00000244757.1 antisense AL137024.1 2 OTTHUMG00000020555.2 overlapping_locus +61280 chr9 HAVANA gene 116398157 116400606 2450.0 - 0 ENSG00000256040.2 antisense PAPPA-AS1 2 OTTHUMG00000187226.1 +61281 chr9 HAVANA gene 116153804 116402322 11573.0 + 0 ENSG00000182752.9 protein_coding PAPPA 2 OTTHUMG00000021045.1 +61282 chr9 HAVANA gene 116504283 116562293 1756.0 + 0 ENSG00000229105.1 antisense ASTN2-AS1 2 OTTHUMG00000020556.1 +61283 chr9 HAVANA gene 116568449 116586328 4996.0 + 0 ENSG00000230894.1 antisense AL133284.1 2 OTTHUMG00000020557.1 +61284 chr9 HAVANA gene 116687302 116701300 3780.0 + 0 ENSG00000119401.10 protein_coding TRIM32 2 OTTHUMG00000021026.4 +61285 chr9 HAVANA gene 116838144 116877264 2075.0 + 0 ENSG00000285820.1 antisense AL157829.1 2 OTTHUMG00000192849.1 +61286 chr9 HAVANA gene 117180628 117181095 468.0 - 0 ENSG00000230734.1 processed_pseudogene RPL10P3 2 OTTHUMG00000020559.2 overlapping_locus +61287 chr9 ENSEMBL gene 117181066 117181200 135.0 - 0 ENSG00000207268.1 snoRNA SNORA70C 3 +61288 chr9 ENSEMBL gene 117197118 117197420 303.0 + 0 ENSG00000201140.1 misc_RNA RN7SKP128 3 +61289 chr9 ENSEMBL gene 117276985 117277286 302.0 + 0 ENSG00000222413.1 misc_RNA RN7SKP125 3 +61290 chr9 HAVANA gene 116425225 117415070 8290.0 - 0 ENSG00000148219.16 protein_coding ASTN2 2 OTTHUMG00000021013.2 ncRNA_host,overlapping_locus +61291 chr9 HAVANA gene 117462294 117466260 751.0 - 0 ENSG00000233516.1 lincRNA AL445644.1 2 OTTHUMG00000020560.1 +61292 chr9 HAVANA gene 117648606 117657027 1299.0 + 0 ENSG00000233569.1 lincRNA AL161630.1 2 OTTHUMG00000020561.1 +61293 chr9 HAVANA gene 117685254 117685588 335.0 - 0 ENSG00000235133.1 processed_pseudogene RPL35AP22 1 OTTHUMG00000020562.2 pseudo_consens +61294 chr9 ENSEMBL gene 117707996 117708102 107.0 - 0 ENSG00000201444.1 snRNA RNU6-1082P 3 +61295 chr9 HAVANA gene 117704175 117724730 13272.0 + 0 ENSG00000136869.14 protein_coding TLR4 2 OTTHUMG00000021046.6 overlapping_locus +61296 chr9 HAVANA gene 117704157 117877478 1727.0 + 0 ENSG00000285082.1 protein_coding AL160272.2 2 OTTHUMG00000192614.1 overlapping_locus +61297 chr9 HAVANA gene 117759455 117879988 17450.0 + 0 ENSG00000284977.1 lincRNA AL160272.1 2 OTTHUMG00000020564.4 overlapping_locus +61298 chr9 HAVANA gene 117840322 117897256 625.0 - 0 ENSG00000231901.1 lincRNA AL354754.1 2 OTTHUMG00000020563.1 +61299 chr9 HAVANA gene 118082869 118083382 514.0 - 0 ENSG00000234782.3 processed_pseudogene TPT1P9 1 OTTHUMG00000020565.1 pseudo_consens +61300 chr9 HAVANA gene 118687752 118705960 386.0 - 0 ENSG00000225050.1 lincRNA AL355592.1 1 OTTHUMG00000020566.1 +61301 chr9 HAVANA gene 118740563 118745312 256.0 + 0 ENSG00000235201.1 lincRNA LINC02578 2 OTTHUMG00000020567.1 +61302 chr9 HAVANA gene 118763867 118764345 479.0 + 0 ENSG00000231166.2 processed_pseudogene TUBB4BP6 2 OTTHUMG00000020568.2 +61303 chr9 HAVANA gene 119153458 119369467 3905.0 - 0 ENSG00000078725.12 protein_coding BRINP1 2 OTTHUMG00000021020.2 +61304 chr9 HAVANA gene 119495375 119524125 1463.0 + 0 ENSG00000260970.1 lincRNA AC006288.1 2 OTTHUMG00000175629.1 +61305 chr9 HAVANA gene 119935053 119937832 2780.0 + 0 ENSG00000261432.1 lincRNA LINC01613 2 OTTHUMG00000175687.1 +61306 chr9 HAVANA gene 119973094 119974322 382.0 + 0 ENSG00000225960.1 lincRNA AL441989.1 1 OTTHUMG00000020570.1 +61307 chr9 ENSEMBL gene 120244979 120245050 72.0 - 0 ENSG00000207814.1 miRNA MIR147A 3 +61308 chr9 HAVANA gene 120388869 120580170 10080.0 - 0 ENSG00000136861.17 protein_coding CDK5RAP2 2 OTTHUMG00000021043.4 +61309 chr9 HAVANA gene 120600813 120714470 6298.0 - 0 ENSG00000106780.8 protein_coding MEGF9 2 OTTHUMG00000021039.1 +61310 chr9 HAVANA gene 120720673 120721972 1300.0 + 0 ENSG00000238181.2 processed_pseudogene AHCYP2 1 OTTHUMG00000020571.2 pseudo_consens +61311 chr9 HAVANA gene 120751978 120793412 11263.0 - 0 ENSG00000119402.16 protein_coding FBXW2 2 OTTHUMG00000020576.3 +61312 chr9 HAVANA gene 120792403 120799918 2516.0 + 0 ENSG00000214654.8 protein_coding B3GNT10 2 OTTHUMG00000020574.3 +61313 chr9 HAVANA gene 120812475 120812845 371.0 - 0 ENSG00000270917.1 processed_pseudogene AL161911.1 1 OTTHUMG00000184660.1 pseudo_consens +61314 chr9 HAVANA gene 120815496 120842984 4432.0 - 0 ENSG00000095261.13 protein_coding PSMD5 2 OTTHUMG00000020573.4 +61315 chr9 HAVANA gene 120824828 120854385 7224.0 + 0 ENSG00000226752.9 transcribed_unitary_pseudogene CUTALP 2 OTTHUMG00000020572.6 +61316 chr9 HAVANA gene 120855652 120894896 6733.0 - 0 ENSG00000119403.14 protein_coding PHF19 2 OTTHUMG00000020577.6 +61317 chr9 HAVANA gene 120902393 120929173 6449.0 - 0 ENSG00000056558.10 protein_coding TRAF1 2 OTTHUMG00000020578.1 +61318 chr9 HAVANA gene 120952335 121050276 6533.0 - 0 ENSG00000106804.7 protein_coding C5 2 OTTHUMG00000020579.3 +61319 chr9 HAVANA gene 121074863 121177610 9417.0 + 0 ENSG00000119397.16 protein_coding CNTRL 1 OTTHUMG00000020581.7 +61320 chr9 ENSEMBL gene 121203159 121203435 277.0 + 0 ENSG00000243738.3 misc_RNA RN7SL181P 3 +61321 chr9 HAVANA gene 121178137 121223014 4304.0 - 0 ENSG00000119396.10 protein_coding RAB14 2 OTTHUMG00000020582.2 +61322 chr9 HAVANA gene 121238117 121240089 1463.0 - 0 ENSG00000214651.4 processed_pseudogene AL513122.1 1 OTTHUMG00000020585.2 pseudo_consens +61323 chr9 HAVANA gene 121279863 121282730 838.0 - 0 ENSG00000239593.1 antisense AL513122.2 1 OTTHUMG00000020588.1 overlapping_locus +61324 chr9 HAVANA gene 121280768 121285530 4763.0 - 0 ENSG00000235865.2 antisense GSN-AS1 2 OTTHUMG00000020586.1 overlapping_locus +61325 chr9 HAVANA gene 121207794 121332843 11018.0 + 0 ENSG00000148180.19 protein_coding GSN 2 OTTHUMG00000020584.8 +61326 chr9 HAVANA gene 121338988 121370304 3198.0 - 0 ENSG00000148175.12 protein_coding STOM 2 OTTHUMG00000020590.2 +61327 chr9 HAVANA gene 121369906 121463237 1671.0 + 0 ENSG00000227355.2 antisense AL359644.1 2 OTTHUMG00000020591.2 +61328 chr9 ENSEMBL gene 121494519 121494821 303.0 + 0 ENSG00000240299.3 misc_RNA RN7SL187P 3 +61329 chr9 HAVANA gene 121444991 121500027 4501.0 - 0 ENSG00000204136.10 transcribed_unitary_pseudogene GGTA1P 2 OTTHUMG00000020592.4 +61330 chr9 HAVANA gene 121519816 121520424 609.0 - 0 ENSG00000213467.4 processed_pseudogene HMGB1P37 1 OTTHUMG00000020593.2 pseudo_consens +61331 chr9 HAVANA gene 121574891 121576214 662.0 - 0 ENSG00000229854.1 antisense AL357936.1 2 OTTHUMG00000020594.1 +61332 chr9 HAVANA gene 121567057 121785530 8408.0 + 0 ENSG00000136848.17 protein_coding DAB2IP 2 OTTHUMG00000020595.5 +61333 chr9 HAVANA gene 121815674 121819452 3779.0 - 0 ENSG00000261534.1 sense_overlapping AL596244.1 2 OTTHUMG00000175795.1 +61334 chr9 HAVANA gene 121884636 121963719 1052.0 - 0 ENSG00000237548.1 lincRNA TTLL11-IT1 2 OTTHUMG00000020596.2 overlapping_locus +61335 chr9 HAVANA gene 121821928 122093606 3535.0 - 0 ENSG00000175764.14 protein_coding TTLL11 2 OTTHUMG00000020597.4 overlapping_locus +61336 chr9 ENSEMBL gene 122120082 122120167 86.0 - 0 ENSG00000266583.1 miRNA MIR4478 3 +61337 chr9 HAVANA gene 122144058 122159819 844.0 - 0 ENSG00000119421.6 protein_coding NDUFA8 2 OTTHUMG00000020598.1 +61338 chr9 HAVANA gene 122159908 122200088 868.0 + 0 ENSG00000185681.12 protein_coding MORN5 2 OTTHUMG00000020599.3 +61339 chr9 HAVANA gene 122202577 122229626 5748.0 - 0 ENSG00000106852.15 protein_coding LHX6 1 OTTHUMG00000020601.8 +61340 chr9 HAVANA gene 122237624 122264839 5193.0 - 0 ENSG00000119446.13 protein_coding RBM18 2 OTTHUMG00000020602.2 +61341 chr9 HAVANA gene 122264603 122331343 11041.0 + 0 ENSG00000148187.17 protein_coding MRRF 2 OTTHUMG00000020600.6 +61342 chr9 HAVANA gene 122372605 122372825 221.0 + 0 ENSG00000269970.1 sense_intronic AL162424.1 2 OTTHUMG00000183935.1 overlapping_locus +61343 chr9 HAVANA gene 122370530 122395703 5790.0 + 0 ENSG00000095303.15 protein_coding PTGS1 2 OTTHUMG00000020605.4 overlapping_locus +61344 chr9 HAVANA gene 122400970 122402906 301.0 - 0 ENSG00000233616.2 lincRNA AL359636.3 2 OTTHUMG00000020610.2 +61345 chr9 HAVANA gene 122403407 122448977 522.0 + 0 ENSG00000229245.2 antisense AL359636.1 2 OTTHUMG00000020611.2 +61346 chr9 HAVANA gene 122471358 122475817 259.0 + 0 ENSG00000231465.2 antisense AL359636.2 2 OTTHUMG00000020612.2 +61347 chr9 HAVANA gene 122476958 122477926 969.0 - 0 ENSG00000136834.3 protein_coding OR1J1 2 OTTHUMG00000020603.2 +61348 chr9 HAVANA gene 122510802 122511743 942.0 + 0 ENSG00000197233.7 protein_coding OR1J2 2 OTTHUMG00000020604.2 +61349 chr9 HAVANA gene 122519141 122520082 942.0 + 0 ENSG00000239590.1 protein_coding OR1J4 2 OTTHUMG00000020606.2 +61350 chr9 HAVANA gene 122526358 122527296 939.0 - 0 ENSG00000171505.5 protein_coding OR1N1 2 OTTHUMG00000020608.2 +61351 chr9 HAVANA gene 122553112 122554214 1103.0 + 0 ENSG00000171501.9 protein_coding OR1N2 2 OTTHUMG00000020607.3 +61352 chr9 HAVANA gene 122567117 122583384 2024.0 - 0 ENSG00000171496.4 protein_coding OR1L8 2 OTTHUMG00000020609.3 +61353 chr9 HAVANA gene 122607864 122608800 937.0 + 0 ENSG00000228914.2 unprocessed_pseudogene OR1H1P 2 OTTHUMG00000020613.3 +61354 chr9 HAVANA gene 122614738 122615682 945.0 + 0 ENSG00000165202.3 protein_coding OR1Q1 2 OTTHUMG00000020615.2 +61355 chr9 HAVANA gene 122628579 122629573 995.0 - 0 ENSG00000280094.2 protein_coding OR1B1 2 OTTHUMG00000020616.5 +61356 chr9 HAVANA gene 122609915 122639685 636.0 + 0 ENSG00000234156.1 antisense AL162254.1 2 OTTHUMG00000020614.1 overlapping_locus +61357 chr9 HAVANA gene 122661566 122662648 1083.0 + 0 ENSG00000173679.2 protein_coding OR1L1 2 OTTHUMG00000020618.2 +61358 chr9 HAVANA gene 122675036 122676153 1118.0 + 0 ENSG00000171481.4 protein_coding OR1L3 2 OTTHUMG00000020619.3 +61359 chr9 HAVANA gene 122685933 122688372 2440.0 + 0 ENSG00000226783.1 processed_pseudogene TLK1P1 1 OTTHUMG00000020623.1 pseudo_consens +61360 chr9 HAVANA gene 122723990 122724925 936.0 + 0 ENSG00000136939.1 protein_coding OR1L4 2 OTTHUMG00000020620.2 +61361 chr9 HAVANA gene 122742303 122750783 1115.0 + 0 ENSG00000171459.4 protein_coding OR1L6 2 OTTHUMG00000020621.5 +61362 chr9 HAVANA gene 122761844 122762233 390.0 + 0 ENSG00000232387.2 processed_pseudogene SKA2P1 1 OTTHUMG00000020617.2 pseudo_consens +61363 chr9 HAVANA gene 122788933 122789895 963.0 + 0 ENSG00000148215.4 protein_coding OR5C1 2 OTTHUMG00000020622.2 +61364 chr9 HAVANA gene 122800123 122801073 951.0 + 0 ENSG00000165204.3 protein_coding OR1K1 2 OTTHUMG00000020625.2 +61365 chr9 HAVANA gene 122798389 122828631 3147.0 - 0 ENSG00000136940.13 protein_coding PDCL 2 OTTHUMG00000020624.1 +61366 chr9 HAVANA gene 122837557 122838820 1264.0 + 0 ENSG00000233425.1 processed_pseudogene KRT18P67 1 OTTHUMG00000020626.1 pseudo_consens +61367 chr9 ENSEMBL gene 122880213 122880323 111.0 - 0 ENSG00000212447.1 snoRNA SNORD90 3 +61368 chr9 HAVANA gene 122844556 122905341 11545.0 - 0 ENSG00000056586.15 protein_coding RC3H2 2 OTTHUMG00000020632.2 ncRNA_host +61369 chr9 HAVANA gene 122908056 122913330 4106.0 - 0 ENSG00000186130.4 protein_coding ZBTB6 2 OTTHUMG00000020628.1 +61370 chr9 HAVANA gene 122915566 122931500 4645.0 - 0 ENSG00000171448.8 protein_coding ZBTB26 2 OTTHUMG00000020627.1 +61371 chr9 HAVANA gene 122937623 122940333 2674.0 + 0 ENSG00000261094.2 sense_overlapping AC007066.2 2 OTTHUMG00000175504.3 +61372 chr9 ENSEMBL gene 122945988 122946094 107.0 - 0 ENSG00000222351.1 misc_RNA RNY1P15 3 +61373 chr9 HAVANA gene 123029373 123029753 381.0 - 0 ENSG00000213216.2 processed_pseudogene AC007066.1 1 OTTHUMG00000020630.2 pseudo_consens +61374 chr9 HAVANA gene 123034527 123035696 1170.0 + 0 ENSG00000188394.6 protein_coding GPR21 2 OTTHUMG00000020631.1 overlapping_locus +61375 chr9 HAVANA gene 123061845 123063312 858.0 - 0 ENSG00000225078.2 processed_pseudogene AL365338.1 2 OTTHUMG00000020634.2 +61376 chr9 HAVANA gene 122940833 123104866 9162.0 + 0 ENSG00000011454.16 protein_coding RABGAP1 1 OTTHUMG00000020633.5 overlapping_locus +61377 chr9 ENSEMBL gene 123111546 123111643 98.0 - 0 ENSG00000283941.1 miRNA MIR600 3 +61378 chr9 HAVANA gene 123109494 123115477 5984.0 - 0 ENSG00000236901.6 sense_intronic MIR600HG 2 OTTHUMG00000020635.2 ncRNA_host,overlapping_locus +61379 chr9 HAVANA gene 123109500 123268576 8097.0 - 0 ENSG00000165209.18 protein_coding STRBP 2 OTTHUMG00000020636.3 ncRNA_host,overlapping_locus +61380 chr9 HAVANA gene 123356170 123380324 6349.0 + 0 ENSG00000148204.11 protein_coding CRB2 2 OTTHUMG00000020638.6 +61381 chr9 ENSEMBL gene 123402525 123402603 79.0 - 0 ENSG00000207991.1 miRNA MIR601 3 +61382 chr9 ENSEMBL gene 123485529 123485622 94.0 - 0 ENSG00000274932.1 miRNA MIR7150 3 +61383 chr9 HAVANA gene 123491884 123493156 722.0 + 0 ENSG00000237336.1 antisense AL445489.1 2 OTTHUMG00000020639.1 +61384 chr9 HAVANA gene 123736437 123751941 788.0 + 0 ENSG00000230826.1 antisense AL390774.2 2 OTTHUMG00000020640.1 +61385 chr9 HAVANA gene 123759220 123759775 246.0 + 0 ENSG00000229115.1 processed_pseudogene AL390774.1 1 OTTHUMG00000020641.1 pseudo_consens +61386 chr9 HAVANA gene 123843036 123843686 651.0 + 0 ENSG00000234881.1 processed_pseudogene PIGFP2 1 OTTHUMG00000020642.1 pseudo_consens +61387 chr9 HAVANA gene 123379654 123930152 10256.0 - 0 ENSG00000119522.16 protein_coding DENND1A 2 OTTHUMG00000020643.1 ncRNA_host +61388 chr9 HAVANA gene 124006277 124009396 2146.0 - 0 ENSG00000236668.2 antisense AC006450.3 2 OTTHUMG00000020644.2 +61389 chr9 HAVANA gene 124010530 124011114 460.0 + 0 ENSG00000231227.1 sense_overlapping AC006450.1 2 OTTHUMG00000020646.1 overlapping_locus +61390 chr9 HAVANA gene 124031624 124032524 581.0 - 0 ENSG00000234921.1 antisense AC006450.2 2 OTTHUMG00000020645.1 +61391 chr9 HAVANA gene 124001670 124033301 2655.0 + 0 ENSG00000106689.10 protein_coding LHX2 2 OTTHUMG00000020647.5 overlapping_locus +61392 chr9 HAVANA gene 124259250 124261156 308.0 - 0 ENSG00000235204.1 antisense AL162724.2 2 OTTHUMG00000020648.1 +61393 chr9 HAVANA gene 124262876 124265809 373.0 + 0 ENSG00000227200.1 sense_intronic AL162724.1 2 OTTHUMG00000020649.1 overlapping_locus +61394 chr9 HAVANA gene 124257606 124353307 4419.0 + 0 ENSG00000119408.16 protein_coding NEK6 2 OTTHUMG00000020650.2 overlapping_locus +61395 chr9 HAVANA gene 124353466 124415444 1787.0 - 0 ENSG00000136930.12 protein_coding PSMB7 2 OTTHUMG00000021042.2 +61396 chr9 HAVANA gene 124451425 124478589 5555.0 + 0 ENSG00000180264.11 protein_coding ADGRD2 2 OTTHUMG00000020652.4 +61397 chr9 HAVANA gene 124481236 124507430 3422.0 - 0 ENSG00000136931.9 protein_coding NR5A1 2 OTTHUMG00000020655.3 +61398 chr9 HAVANA gene 124514938 124516056 266.0 - 0 ENSG00000231149.2 lincRNA AL354979.1 2 OTTHUMG00000020654.2 +61399 chr9 HAVANA gene 124598707 124599580 607.0 - 0 ENSG00000231744.1 processed_pseudogene AL669818.1 1 OTTHUMG00000020656.1 pseudo_consens,overlapping_locus +61400 chr9 ENSEMBL gene 124607159 124607458 300.0 + 0 ENSG00000241246.3 misc_RNA RN7SL302P 3 +61401 chr9 ENSEMBL gene 124692442 124692551 110.0 + 0 ENSG00000207595.1 miRNA MIR181A2 3 +61402 chr9 ENSEMBL gene 124693710 124693798 89.0 + 0 ENSG00000207737.1 miRNA MIR181B2 3 +61403 chr9 HAVANA gene 124658467 124698631 662.0 + 0 ENSG00000224020.1 antisense MIR181A2HG 2 OTTHUMG00000020657.1 ncRNA_host +61404 chr9 HAVANA gene 124517275 124771310 7124.0 - 0 ENSG00000148200.16 protein_coding NR6A1 2 OTTHUMG00000020661.5 overlapping_locus +61405 chr9 HAVANA gene 124770123 124772927 617.0 + 0 ENSG00000236643.1 antisense AL354928.1 2 OTTHUMG00000020662.1 +61406 chr9 HAVANA gene 124777158 124814885 6746.0 + 0 ENSG00000185585.19 protein_coding OLFML2A 2 OTTHUMG00000020663.3 +61407 chr9 HAVANA gene 124853417 124857890 1387.0 + 0 ENSG00000136918.7 protein_coding WDR38 2 OTTHUMG00000020664.1 +61408 chr9 HAVANA gene 124857880 124861981 1535.0 - 0 ENSG00000136942.14 protein_coding RPL35 2 OTTHUMG00000020659.4 +61409 chr9 HAVANA gene 124862130 124877733 3610.0 + 0 ENSG00000136950.13 protein_coding ARPC5L 2 OTTHUMG00000020660.2 +61410 chr9 ENSEMBL gene 124887410 124887549 140.0 - 0 ENSG00000199313.1 snRNA RNU4-82P 3 +61411 chr9 HAVANA gene 124878357 124948492 6019.0 - 0 ENSG00000136935.13 protein_coding GOLGA1 2 OTTHUMG00000020665.7 ncRNA_host,overlapping_locus +61412 chr9 HAVANA gene 124968294 124968840 547.0 - 0 ENSG00000177736.4 processed_pseudogene FXNP2 1 OTTHUMG00000020666.2 pseudo_consens,overlapping_locus +61413 chr9 HAVANA gene 124942608 125143506 13014.0 - 0 ENSG00000173611.17 protein_coding SCAI 2 OTTHUMG00000020667.4 overlapping_locus +61414 chr9 HAVANA gene 125150653 125151589 937.0 + 0 ENSG00000232630.1 processed_pseudogene PRPS1P2 1 OTTHUMG00000020669.1 pseudo_consens +61415 chr9 HAVANA gene 125146573 125189939 4443.0 - 0 ENSG00000119414.11 protein_coding PPP6C 2 OTTHUMG00000020671.2 +61416 chr9 HAVANA gene 125194649 125195821 853.0 - 0 ENSG00000235332.2 processed_pseudogene RPSAP76 1 OTTHUMG00000020670.2 pseudo_consens +61417 chr9 HAVANA gene 125200542 125234158 3401.0 + 0 ENSG00000136933.16 protein_coding RABEPK 2 OTTHUMG00000020674.2 +61418 chr9 HAVANA gene 125234853 125241330 3908.0 - 0 ENSG00000044574.7 protein_coding HSPA5 2 OTTHUMG00000020672.1 +61419 chr9 HAVANA gene 125241663 125257018 550.0 + 0 ENSG00000239705.1 antisense AL354710.2 2 OTTHUMG00000159480.1 +61420 chr9 HAVANA gene 125263845 125264090 246.0 - 0 ENSG00000214593.3 processed_pseudogene AL354710.1 1 OTTHUMG00000020676.1 pseudo_consens +61421 chr9 ENSEMBL gene 125303920 125304026 107.0 - 0 ENSG00000200554.1 snRNA RNU6-1020P 3 +61422 chr9 HAVANA gene 125261794 125367207 13625.0 + 0 ENSG00000165219.21 protein_coding GAPVD1 1 OTTHUMG00000020678.9 +61423 chr9 HAVANA gene 125372325 125372766 442.0 - 0 ENSG00000227845.2 processed_pseudogene AL627223.1 1 OTTHUMG00000020679.2 pseudo_consens +61424 chr9 ENSEMBL gene 125417305 125417586 282.0 + 0 ENSG00000274510.1 misc_RNA RF00017 3 +61425 chr9 ENSEMBL gene 125512902 125513207 306.0 - 0 ENSG00000243845.3 misc_RNA RN7SL30P 3 +61426 chr9 HAVANA gene 125567579 125573023 633.0 + 0 ENSG00000227068.1 antisense AL162584.1 2 OTTHUMG00000020681.1 +61427 chr9 HAVANA gene 125595669 125596628 960.0 + 0 ENSG00000214761.3 processed_pseudogene HNRNPA1P15 1 OTTHUMG00000020680.1 pseudo_consens +61428 chr9 HAVANA gene 125437393 125707234 6741.0 - 0 ENSG00000119487.16 protein_coding MAPKAP1 1 OTTHUMG00000020683.7 ncRNA_host +61429 chr9 HAVANA gene 125743754 125746552 2390.0 - 0 ENSG00000229582.3 processed_transcript AL358074.1 1 OTTHUMG00000020682.2 +61430 chr9 HAVANA gene 125747345 125967377 4529.0 + 0 ENSG00000167081.16 protein_coding PBX3 2 OTTHUMG00000020684.4 +61431 chr9 HAVANA gene 126057580 126159613 316.0 + 0 ENSG00000232413.1 lincRNA AL589923.1 2 OTTHUMG00000020685.1 +61432 chr9 HAVANA gene 126270121 126275918 2102.0 - 0 ENSG00000228392.1 lincRNA AL162391.1 2 OTTHUMG00000020686.1 +61433 chr9 ENSEMBL gene 126408041 126408410 370.0 - 0 ENSG00000253079.1 misc_RNA NRON 3 +61434 chr9 ENSEMBL gene 126426893 126426970 78.0 + 0 ENSG00000252985.1 snoRNA RF00108 3 +61435 chr9 HAVANA gene 126326849 126507041 7884.0 + 0 ENSG00000196814.14 protein_coding MVB12B 2 OTTHUMG00000020687.2 ncRNA_host +61436 chr9 HAVANA gene 126516417 126518808 719.0 + 0 ENSG00000233721.1 lincRNA AL356309.2 2 OTTHUMG00000020688.1 +61437 chr9 HAVANA gene 126518840 126520773 1934.0 + 0 ENSG00000279137.1 TEC AL356309.3 2 OTTHUMG00000175455.1 +61438 chr9 HAVANA gene 126527618 126530343 339.0 + 0 ENSG00000226078.1 lincRNA AL356309.1 2 OTTHUMG00000020689.1 +61439 chr9 HAVANA gene 126589594 126613700 943.0 - 0 ENSG00000224842.2 antisense AL161908.1 2 OTTHUMG00000020690.2 +61440 chr9 HAVANA gene 126640756 126641293 394.0 + 0 ENSG00000238010.1 sense_intronic AL161908.2 2 OTTHUMG00000020691.1 overlapping_locus +61441 chr9 HAVANA gene 126614443 126701032 5830.0 + 0 ENSG00000136944.17 protein_coding LMX1B 2 OTTHUMG00000020692.6 overlapping_locus +61442 chr9 HAVANA gene 126805006 126838210 7052.0 + 0 ENSG00000169155.9 protein_coding ZBTB43 2 OTTHUMG00000020693.3 +61443 chr9 HAVANA gene 126860665 126885878 6606.0 + 0 ENSG00000177125.5 protein_coding ZBTB34 2 OTTHUMG00000020694.1 +61444 chr9 HAVANA gene 127087332 127122883 3889.0 - 0 ENSG00000136859.9 protein_coding ANGPTL2 2 OTTHUMG00000020695.1 +61445 chr9 HAVANA gene 127213783 127221907 649.0 - 0 ENSG00000228487.2 antisense AL450263.1 1 OTTHUMG00000020697.2 +61446 chr9 HAVANA gene 126914774 127223166 10507.0 + 0 ENSG00000136828.18 protein_coding RALGPS1 2 OTTHUMG00000020696.3 +61447 chr9 HAVANA gene 127300093 127300982 589.0 - 0 ENSG00000229369.1 processed_pseudogene AL450263.2 1 OTTHUMG00000020699.1 pseudo_consens +61448 chr9 HAVANA gene 127366770 127367397 628.0 + 0 ENSG00000271833.1 sense_intronic AL445222.1 2 OTTHUMG00000185720.1 overlapping_locus +61449 chr9 HAVANA gene 127224265 127393660 9695.0 + 0 ENSG00000136895.18 protein_coding GARNL3 1 OTTHUMG00000020700.9 overlapping_locus +61450 chr9 HAVANA gene 127397138 127408424 3928.0 + 0 ENSG00000136856.17 protein_coding SLC2A8 2 OTTHUMG00000020702.5 +61451 chr9 HAVANA gene 127424374 127445372 2302.0 + 0 ENSG00000196152.10 protein_coding ZNF79 2 OTTHUMG00000020703.1 +61452 chr9 ENSEMBL gene 127448501 127448630 130.0 - 0 ENSG00000201302.1 snoRNA SNORA65 3 +61453 chr9 HAVANA gene 127447674 127451405 2452.0 - 0 ENSG00000197958.12 protein_coding RPL12 2 OTTHUMG00000020704.2 ncRNA_host +61454 chr9 ENSEMBL gene 127470875 127470987 113.0 + 0 ENSG00000200788.1 misc_RNA RF00019 3 +61455 chr9 HAVANA gene 127451486 127503501 4365.0 + 0 ENSG00000148356.13 protein_coding LRSAM1 2 OTTHUMG00000020701.2 ncRNA_host +61456 chr9 HAVANA gene 127505339 127578989 4629.0 - 0 ENSG00000136830.11 protein_coding FAM129B 2 OTTHUMG00000020705.2 +61457 chr9 ENSEMBL gene 127690687 127690795 109.0 - 0 ENSG00000283874.1 miRNA MIR3911 3 +61458 chr9 HAVANA gene 127690098 127690840 743.0 - 0 ENSG00000279571.3 lincRNA AL162426.1 2 OTTHUMG00000189321.1 ncRNA_host +61459 chr9 HAVANA gene 127579370 127696027 9320.0 + 0 ENSG00000136854.20 protein_coding STXBP1 1 OTTHUMG00000020713.12 +61460 chr9 HAVANA gene 127706989 127716002 4703.0 + 0 ENSG00000160401.14 protein_coding CFAP157 2 OTTHUMG00000020709.4 +61461 chr9 HAVANA gene 127690348 127724873 4072.0 - 0 ENSG00000187024.14 protein_coding PTRH1 1 OTTHUMG00000020710.8 ncRNA_host +61462 chr9 HAVANA gene 127716066 127731600 6370.0 + 0 ENSG00000167094.15 protein_coding TTC16 2 OTTHUMG00000020711.1 +61463 chr9 HAVANA gene 127731524 127735317 3794.0 - 0 ENSG00000160404.17 protein_coding TOR2A 2 OTTHUMG00000020706.2 +61464 chr9 HAVANA gene 127738317 127778741 4659.0 - 0 ENSG00000095370.19 protein_coding SH2D3C 2 OTTHUMG00000020717.5 +61465 chr9 ENSEMBL gene 127785833 127785923 91.0 + 0 ENSG00000283863.1 miRNA MIR3960 3 +61466 chr9 ENSEMBL gene 127785918 127786007 90.0 + 0 ENSG00000284547.1 miRNA MIR2861 3 +61467 chr9 HAVANA gene 127785679 127790787 3000.0 + 0 ENSG00000136807.13 protein_coding CDK9 2 OTTHUMG00000020715.3 ncRNA_host +61468 chr9 HAVANA gene 127794597 127814327 3931.0 + 0 ENSG00000136877.14 protein_coding FPGS 2 OTTHUMG00000020716.5 +61469 chr9 HAVANA gene 127816066 127822520 2247.0 + 0 ENSG00000225032.5 antisense AL162586.1 2 OTTHUMG00000020714.1 +61470 chr9 ENSEMBL gene 127832635 127832743 109.0 - 0 ENSG00000222421.1 misc_RNA RF00019 3 +61471 chr9 ENSEMBL gene 127841112 127841222 111.0 - 0 ENSG00000222455.1 rRNA_pseudogene RNA5SP296 3 +61472 chr9 HAVANA gene 127815012 127854756 3935.0 - 0 ENSG00000106991.13 protein_coding ENG 2 OTTHUMG00000020723.1 ncRNA_host +61473 chr9 ENSEMBL gene 127869415 127869495 81.0 - 0 ENSG00000263979.1 miRNA MIR4672 3 +61474 chr9 HAVANA gene 127866480 127877743 2667.0 - 0 ENSG00000106992.18 protein_coding AK1 2 OTTHUMG00000020722.10 ncRNA_host,overlapping_locus +61475 chr9 HAVANA gene 127885321 127905408 5307.0 - 0 ENSG00000160408.14 protein_coding ST6GALNAC6 1 OTTHUMG00000020718.4 overlapping_locus +61476 chr9 HAVANA gene 127867850 127906022 3815.0 - 0 ENSG00000257524.6 protein_coding AL157935.2 2 OTTHUMG00000169436.5 ncRNA_host,overlapping_locus +61477 chr9 HAVANA gene 127907886 127917038 2630.0 - 0 ENSG00000136840.18 protein_coding ST6GALNAC4 2 OTTHUMG00000020724.4 +61478 chr9 HAVANA gene 127920879 127930797 3341.0 - 0 ENSG00000167103.11 protein_coding PIP5KL1 2 OTTHUMG00000020719.4 +61479 chr9 HAVANA gene 127935099 127938484 3133.0 - 0 ENSG00000136908.17 protein_coding DPM2 2 OTTHUMG00000020725.2 +61480 chr9 HAVANA gene 127934503 127940952 2520.0 + 0 ENSG00000227218.7 antisense AL157935.1 2 OTTHUMG00000020721.3 +61481 chr9 HAVANA gene 127940579 127980513 6100.0 - 0 ENSG00000167106.11 protein_coding FAM102A 2 OTTHUMG00000020720.4 +61482 chr9 HAVANA gene 128039135 128057362 380.0 - 0 ENSG00000230848.1 antisense AL360268.2 1 OTTHUMG00000020726.1 +61483 chr9 HAVANA gene 128061233 128068206 3621.0 - 0 ENSG00000171169.8 protein_coding NAIF1 2 OTTHUMG00000020727.2 +61484 chr9 HAVANA gene 128090969 128094457 765.0 - 0 ENSG00000230536.1 antisense AL360268.1 1 OTTHUMG00000020728.1 +61485 chr9 HAVANA gene 128068201 128109245 4936.0 + 0 ENSG00000148339.12 protein_coding SLC25A25 1 OTTHUMG00000020736.2 +61486 chr9 HAVANA gene 128108581 128118693 6391.0 - 0 ENSG00000234771.3 antisense SLC25A25-AS1 2 OTTHUMG00000020737.2 +61487 chr9 HAVANA gene 128120693 128128462 3039.0 - 0 ENSG00000148334.14 protein_coding PTGES2 1 OTTHUMG00000020730.3 +61488 chr9 HAVANA gene 128128529 128130628 2100.0 + 0 ENSG00000232850.3 lincRNA PTGES2-AS1 2 OTTHUMG00000187229.2 +61489 chr9 HAVANA gene 128149071 128153455 1598.0 + 0 ENSG00000148346.11 protein_coding LCN2 2 OTTHUMG00000020734.1 +61490 chr9 HAVANA gene 128160260 128163928 1662.0 + 0 ENSG00000171159.4 protein_coding C9orf16 2 OTTHUMG00000020731.1 +61491 chr9 HAVANA gene 128166064 128204383 6993.0 - 0 ENSG00000148337.20 protein_coding CIZ1 2 OTTHUMG00000020735.6 +61492 chr9 ENSEMBL gene 128244721 128244830 110.0 - 0 ENSG00000207581.1 miRNA MIR199B 3 +61493 chr9 ENSEMBL gene 128244947 128245030 84.0 - 0 ENSG00000264823.3 miRNA MIR3154 3 +61494 chr9 HAVANA gene 128191655 128255248 10775.0 + 0 ENSG00000106976.20 protein_coding DNM1 2 OTTHUMG00000020733.13 +61495 chr9 HAVANA gene 128255829 128275995 6961.0 - 0 ENSG00000167110.17 protein_coding GOLGA2 2 OTTHUMG00000020732.10 +61496 chr9 HAVANA gene 128275379 128288990 1649.0 + 0 ENSG00000175854.11 protein_coding SWI5 2 OTTHUMG00000020729.4 +61497 chr9 HAVANA gene 128316337 128316909 573.0 + 0 ENSG00000272696.1 antisense AL359091.4 2 OTTHUMG00000185895.1 +61498 chr9 HAVANA gene 128305161 128322742 6125.0 - 0 ENSG00000167112.9 protein_coding TRUB2 2 OTTHUMG00000020741.2 +61499 chr9 HAVANA gene 128322536 128334072 4814.0 + 0 ENSG00000167113.10 protein_coding COQ4 2 OTTHUMG00000020743.2 +61500 chr9 HAVANA gene 128342153 128342770 618.0 + 0 ENSG00000223551.1 processed_pseudogene TMSB4XP4 2 OTTHUMG00000020739.1 overlapping_locus +61501 chr9 HAVANA gene 128340646 128361470 3110.0 + 0 ENSG00000167114.12 protein_coding SLC27A4 2 OTTHUMG00000020746.2 overlapping_locus +61502 chr9 HAVANA gene 128391461 128392016 556.0 + 0 ENSG00000272593.1 lincRNA AL359091.3 2 OTTHUMG00000185896.1 +61503 chr9 HAVANA gene 128371319 128392016 4410.0 + 0 ENSG00000167118.10 protein_coding URM1 2 OTTHUMG00000020742.5 +61504 chr9 ENSEMBL gene 128392621 128392708 88.0 + 0 ENSG00000283335.1 miRNA MIR219B 3 +61505 chr9 ENSEMBL gene 128392618 128392714 97.0 - 0 ENSG00000284185.1 miRNA MIR219A2 3 +61506 chr9 HAVANA gene 128392007 128393510 1504.0 - 0 ENSG00000207955.5 lincRNA AL359091.1 2 OTTHUMG00000185897.2 ncRNA_host +61507 chr9 HAVANA gene 128431598 128432006 409.0 + 0 ENSG00000273186.1 sense_intronic AL359091.5 2 OTTHUMG00000185898.1 overlapping_locus +61508 chr9 HAVANA gene 128411751 128437351 6059.0 + 0 ENSG00000167123.18 protein_coding CERCAM 2 OTTHUMG00000020747.5 overlapping_locus +61509 chr9 HAVANA gene 128444587 128446628 1734.0 + 0 ENSG00000228510.2 processed_pseudogene AL359091.2 1 OTTHUMG00000020744.2 pseudo_consens +61510 chr9 HAVANA gene 128468957 128473012 407.0 - 0 ENSG00000225951.1 antisense ODF2-AS1 1 OTTHUMG00000020745.1 +61511 chr9 HAVANA gene 128455186 128501292 6393.0 + 0 ENSG00000136811.16 protein_coding ODF2 1 OTTHUMG00000020748.6 +61512 chr9 HAVANA gene 128504700 128542288 3527.0 + 0 ENSG00000119392.14 protein_coding GLE1 2 OTTHUMG00000020749.1 +61513 chr9 ENSEMBL gene 128543916 128543977 62.0 + 0 ENSG00000238406.1 snRNA RNU7-171P 3 +61514 chr9 HAVANA gene 128528901 128552410 1242.0 - 0 ENSG00000228395.1 antisense AL356481.1 2 OTTHUMG00000020752.1 +61515 chr9 HAVANA gene 128595893 128596633 528.0 + 0 ENSG00000280474.1 sense_intronic AL356481.2 2 OTTHUMG00000189752.1 +61516 chr9 HAVANA gene 128630328 128631685 575.0 - 0 ENSG00000280758.1 antisense AL356481.3 2 OTTHUMG00000189753.1 +61517 chr9 HAVANA gene 128552558 128633662 16236.0 + 0 ENSG00000197694.15 protein_coding SPTAN1 2 OTTHUMG00000020754.13 +61518 chr9 HAVANA gene 128650998 128652145 527.0 + 0 ENSG00000227759.2 processed_pseudogene VTI1BP4 1 OTTHUMG00000020751.2 pseudo_consens +61519 chr9 HAVANA gene 128633661 128656787 2604.0 - 0 ENSG00000119333.11 protein_coding WDR34 2 OTTHUMG00000020750.2 +61520 chr9 HAVANA gene 128663134 128663578 334.0 - 0 ENSG00000234705.1 antisense HMGA1P4 2 OTTHUMG00000020753.1 +61521 chr9 HAVANA gene 128683424 128696400 4355.0 + 0 ENSG00000119335.16 protein_coding SET 2 OTTHUMG00000020755.4 +61522 chr9 ENSEMBL gene 128709780 128710043 264.0 + 0 ENSG00000264438.2 misc_RNA RN7SL560P 3 +61523 chr9 HAVANA gene 128702523 128720918 3375.0 + 0 ENSG00000160447.6 protein_coding PKN3 2 OTTHUMG00000020757.1 ncRNA_host +61524 chr9 HAVANA gene 128720869 128724127 2597.0 - 0 ENSG00000160446.18 protein_coding ZDHHC12 1 OTTHUMG00000020756.4 +61525 chr9 HAVANA gene 128724445 128733194 544.0 + 0 ENSG00000223478.1 antisense AL441992.1 1 OTTHUMG00000020758.1 +61526 chr9 ENSEMBL gene 128745857 128746138 282.0 - 0 ENSG00000203286.5 misc_RNA RF00017 3 +61527 chr9 HAVANA gene 128729786 128772414 4370.0 - 0 ENSG00000160445.10 protein_coding ZER1 2 OTTHUMG00000020759.2 ncRNA_host +61528 chr9 HAVANA gene 128787204 128810432 3982.0 + 0 ENSG00000107021.15 protein_coding TBC1D13 2 OTTHUMG00000020760.1 +61529 chr9 HAVANA gene 128818474 128822677 1172.0 + 0 ENSG00000167136.6 protein_coding ENDOG 2 OTTHUMG00000020763.1 +61530 chr9 HAVANA gene 128819651 128829821 4593.0 - 0 ENSG00000198917.12 protein_coding SPOUT1 1 OTTHUMG00000020762.2 +61531 chr9 HAVANA gene 128832942 128882494 3624.0 - 0 ENSG00000171097.13 protein_coding KYAT1 2 OTTHUMG00000020767.5 +61532 chr9 HAVANA gene 128882112 128918039 5230.0 + 0 ENSG00000136802.11 protein_coding LRRC8A 1 OTTHUMG00000020766.3 +61533 chr9 HAVANA gene 128920895 128942041 2915.0 + 0 ENSG00000175287.18 protein_coding PHYHD1 2 OTTHUMG00000020764.19 overlapping_locus +61534 chr9 HAVANA gene 128945530 128947619 2090.0 - 0 ENSG00000175283.7 protein_coding DOLK 2 OTTHUMG00000020765.1 +61535 chr9 HAVANA gene 128941478 128957021 378.0 + 0 ENSG00000251184.1 protein_coding AL672142.1 2 OTTHUMG00000166431.3 overlapping_locus +61536 chr9 HAVANA gene 129004502 129004998 497.0 - 0 ENSG00000267834.1 lincRNA AL592211.1 2 OTTHUMG00000183018.1 +61537 chr9 HAVANA gene 128947699 129007096 8041.0 + 0 ENSG00000095319.14 protein_coding NUP188 2 OTTHUMG00000020768.7 overlapping_locus +61538 chr9 HAVANA gene 129007036 129028303 6814.0 - 0 ENSG00000148341.17 protein_coding SH3GLB2 2 OTTHUMG00000020769.8 +61539 chr9 HAVANA gene 129036621 129072082 6302.0 + 0 ENSG00000148343.18 protein_coding MIGA2 2 OTTHUMG00000020770.10 +61540 chr9 HAVANA gene 129081100 129090438 2249.0 + 0 ENSG00000167130.17 protein_coding DOLPP1 2 OTTHUMG00000020771.8 +61541 chr9 HAVANA gene 129097854 129100266 241.0 + 0 ENSG00000234055.1 antisense AL158151.2 2 OTTHUMG00000046129.3 +61542 chr9 HAVANA gene 129094810 129111189 3803.0 - 0 ENSG00000095321.16 protein_coding CRAT 1 OTTHUMG00000147343.5 +61543 chr9 HAVANA gene 129110950 129148946 5624.0 + 0 ENSG00000119383.19 protein_coding PTPA 1 OTTHUMG00000020774.22 +61544 chr9 HAVANA gene 129170434 129170940 507.0 + 0 ENSG00000268707.1 lincRNA AL158151.4 2 OTTHUMG00000183019.1 +61545 chr9 HAVANA gene 129175807 129177575 696.0 + 0 ENSG00000268050.2 antisense AL158151.3 2 OTTHUMG00000183020.2 overlapping_locus +61546 chr9 HAVANA gene 129175552 129178262 2711.0 - 0 ENSG00000188483.7 protein_coding IER5L 2 OTTHUMG00000020773.2 +61547 chr9 HAVANA gene 129176771 129210548 2288.0 + 0 ENSG00000204055.4 antisense AL158151.1 2 OTTHUMG00000046130.3 overlapping_locus +61548 chr9 HAVANA gene 129258354 129259846 966.0 + 0 ENSG00000235007.2 lincRNA AL161785.2 2 OTTHUMG00000020777.2 overlapping_locus +61549 chr9 HAVANA gene 129259062 129261581 395.0 + 0 ENSG00000241084.1 lincRNA AL161785.3 2 OTTHUMG00000020776.1 overlapping_locus +61550 chr9 HAVANA gene 129282458 129285728 583.0 + 0 ENSG00000224307.1 lincRNA AL161785.1 1 OTTHUMG00000020775.2 +61551 chr9 HAVANA gene 129321016 129324905 3145.0 + 0 ENSG00000179082.3 lincRNA C9orf106 2 OTTHUMG00000020781.2 +61552 chr9 HAVANA gene 129328261 129328401 141.0 + 0 ENSG00000268615.1 lincRNA AL353803.5 2 OTTHUMG00000183021.1 +61553 chr9 HAVANA gene 129332300 129359538 1594.0 + 0 ENSG00000233901.5 lincRNA LINC01503 2 OTTHUMG00000020778.5 +61554 chr9 ENSEMBL gene 129370170 129370461 292.0 - 0 ENSG00000242281.3 misc_RNA RN7SL159P 3 +61555 chr9 HAVANA gene 129380136 129380470 335.0 - 0 ENSG00000236146.2 processed_pseudogene AL353803.3 2 OTTHUMG00000020782.3 +61556 chr9 HAVANA gene 129438216 129439118 800.0 + 0 ENSG00000226355.1 lincRNA AL353803.1 2 OTTHUMG00000020779.2 +61557 chr9 HAVANA gene 129430652 129451422 2054.0 - 0 ENSG00000230676.1 lincRNA AL353803.2 2 OTTHUMG00000020780.3 +61558 chr9 HAVANA gene 129480605 129482538 1934.0 - 0 ENSG00000261334.1 lincRNA AL353803.4 2 OTTHUMG00000175667.1 +61559 chr9 HAVANA gene 129483451 129513686 13171.0 + 0 ENSG00000204054.13 processed_transcript LINC00963 2 OTTHUMG00000020783.9 +61560 chr9 HAVANA gene 129575409 129584556 2449.0 + 0 ENSG00000227619.1 lincRNA AL391056.1 2 OTTHUMG00000020784.2 +61561 chr9 HAVANA gene 129612225 129620776 1620.0 - 0 ENSG00000179058.6 protein_coding C9orf50 2 OTTHUMG00000020786.2 +61562 chr9 HAVANA gene 129608884 129636131 3029.0 + 0 ENSG00000148335.14 protein_coding NTMT1 2 OTTHUMG00000020785.3 +61563 chr9 HAVANA gene 129640476 129641282 470.0 + 0 ENSG00000234789.1 antisense AL590369.1 2 OTTHUMG00000020788.1 +61564 chr9 HAVANA gene 129634604 129642169 4622.0 - 0 ENSG00000148331.11 protein_coding ASB6 2 OTTHUMG00000020787.2 +61565 chr9 HAVANA gene 129712896 129718635 429.0 - 0 ENSG00000236024.1 antisense PRRX2-AS1 2 OTTHUMG00000020789.1 +61566 chr9 HAVANA gene 129665641 129722674 1311.0 + 0 ENSG00000167157.10 protein_coding PRRX2 2 OTTHUMG00000020790.3 +61567 chr9 HAVANA gene 129738331 129753047 1896.0 - 0 ENSG00000148344.10 protein_coding PTGES 2 OTTHUMG00000020791.4 +61568 chr9 HAVANA gene 129791196 129791837 344.0 + 0 ENSG00000233909.1 processed_pseudogene UBE2V1P4 1 OTTHUMG00000020792.1 pseudo_consens +61569 chr9 HAVANA gene 129803153 129811281 2911.0 + 0 ENSG00000136816.15 protein_coding TOR1B 2 OTTHUMG00000020795.1 +61570 chr9 HAVANA gene 129812944 129824134 3766.0 - 0 ENSG00000136827.11 protein_coding TOR1A 2 OTTHUMG00000020794.3 +61571 chr9 HAVANA gene 129827290 129835863 5099.0 - 0 ENSG00000136819.15 protein_coding C9orf78 2 OTTHUMG00000020796.2 +61572 chr9 ENSEMBL gene 129869605 129869671 67.0 + 0 ENSG00000276124.1 miRNA MIR6855 3 +61573 chr9 HAVANA gene 129834698 129881838 5521.0 + 0 ENSG00000136878.12 protein_coding USP20 2 OTTHUMG00000020793.3 ncRNA_host +61574 chr9 HAVANA gene 129883693 129884170 341.0 - 0 ENSG00000224988.1 processed_pseudogene AL158207.1 1 OTTHUMG00000020798.1 pseudo_consens +61575 chr9 HAVANA gene 129933536 129936541 266.0 + 0 ENSG00000230684.1 antisense AL158207.2 2 OTTHUMG00000020797.1 +61576 chr9 HAVANA gene 129887187 130043194 6600.0 - 0 ENSG00000187239.16 protein_coding FNBP1 1 OTTHUMG00000020800.2 +61577 chr9 HAVANA gene 130044713 130045081 369.0 + 0 ENSG00000270755.1 lincRNA AL136141.1 2 OTTHUMG00000184927.1 +61578 chr9 ENSEMBL gene 130120806 130120912 107.0 + 0 ENSG00000223188.1 misc_RNA RF00019 3 +61579 chr9 HAVANA gene 130053426 130140169 9139.0 + 0 ENSG00000148358.19 protein_coding GPR107 2 OTTHUMG00000020804.5 ncRNA_host +61580 chr9 HAVANA gene 130140610 130144219 3258.0 - 0 ENSG00000196979.1 lincRNA AL360004.1 2 OTTHUMG00000187231.1 +61581 chr9 HAVANA gene 130172578 130237304 5289.0 + 0 ENSG00000107130.9 protein_coding NCS1 2 OTTHUMG00000020801.2 +61582 chr9 ENSEMBL gene 130400266 130400565 300.0 + 0 ENSG00000264169.2 misc_RNA RN7SL665P 3 +61583 chr9 HAVANA gene 130265882 130434123 20363.0 + 0 ENSG00000148357.16 protein_coding HMCN2 1 OTTHUMG00000140096.5 ncRNA_host +61584 chr9 HAVANA gene 130444929 130501274 3050.0 + 0 ENSG00000130707.17 protein_coding ASS1 2 OTTHUMG00000020806.4 +61585 chr9 ENSEMBL gene 130626297 130626363 67.0 + 0 ENSG00000277713.1 miRNA MIR6856 3 +61586 chr9 HAVANA gene 130578965 130638352 5507.0 + 0 ENSG00000107164.15 protein_coding FUBP3 2 OTTHUMG00000020809.3 ncRNA_host +61587 chr9 HAVANA gene 130651799 130652383 585.0 + 0 ENSG00000232172.1 processed_pseudogene AL359092.2 1 OTTHUMG00000020810.1 pseudo_consens +61588 chr9 HAVANA gene 130664594 130682981 2476.0 + 0 ENSG00000130711.3 protein_coding PRDM12 2 OTTHUMG00000020808.1 +61589 chr9 HAVANA gene 130693721 130704894 4240.0 + 0 ENSG00000130713.15 protein_coding EXOSC2 2 OTTHUMG00000020811.4 +61590 chr9 HAVANA gene 130724786 130725050 265.0 - 0 ENSG00000224797.1 processed_pseudogene AL359092.1 1 OTTHUMG00000020812.1 pseudo_consens +61591 chr9 HAVANA gene 130713946 130887675 6276.0 + 0 ENSG00000097007.17 protein_coding ABL1 2 OTTHUMG00000020813.3 +61592 chr9 HAVANA gene 130892702 130896812 1658.0 - 0 ENSG00000188710.2 protein_coding QRFP 2 OTTHUMG00000131663.2 +61593 chr9 HAVANA gene 130902438 130939286 3831.0 - 0 ENSG00000130720.12 protein_coding FIBCD1 1 OTTHUMG00000020814.4 +61594 chr9 HAVANA gene 130933851 130945520 462.0 + 0 ENSG00000236658.1 antisense AL161733.1 2 OTTHUMG00000020815.1 +61595 chr9 ENSEMBL gene 131021168 131021306 139.0 - 0 ENSG00000252582.1 snoRNA RF00322 3 +61596 chr9 HAVANA gene 131009082 131094473 7594.0 + 0 ENSG00000050555.17 protein_coding LAMC3 2 OTTHUMG00000020819.4 +61597 chr9 HAVANA gene 131096476 131123152 5299.0 + 0 ENSG00000126878.12 protein_coding AIF1L 1 OTTHUMG00000020817.3 +61598 chr9 ENSEMBL gene 131126990 131127091 102.0 + 0 ENSG00000252622.1 snRNA RNU6-881P 3 +61599 chr9 HAVANA gene 131132852 131167505 3028.0 - 0 ENSG00000236986.6 antisense AL157938.2 2 OTTHUMG00000020818.3 +61600 chr9 HAVANA gene 131189910 131194205 3084.0 - 0 ENSG00000246851.1 antisense AL157938.3 2 OTTHUMG00000165429.1 +61601 chr9 HAVANA gene 131125561 131234670 13062.0 + 0 ENSG00000126883.16 protein_coding NUP214 1 OTTHUMG00000020816.6 ncRNA_host +61602 chr9 HAVANA gene 131240687 131241724 559.0 + 0 ENSG00000226987.1 processed_pseudogene AL157938.1 1 OTTHUMG00000020820.1 pseudo_consens +61603 chr9 HAVANA gene 131258076 131276547 5499.0 - 0 ENSG00000126882.12 protein_coding FAM78A 2 OTTHUMG00000020821.2 +61604 chr9 HAVANA gene 131289459 131359022 4350.0 + 0 ENSG00000160539.5 protein_coding PLPP7 2 OTTHUMG00000020822.2 +61605 chr9 HAVANA gene 131370933 131372514 653.0 + 0 ENSG00000285287.1 unprocessed_pseudogene AL354855.1 2 OTTHUMG00000192472.1 +61606 chr9 ENSEMBL gene 131485665 131485750 86.0 + 0 ENSG00000235284.1 snoRNA SNORD62A 3 +61607 chr9 ENSEMBL gene 131490486 131490571 86.0 + 0 ENSG00000231587.1 snoRNA SNORD62B 3 +61608 chr9 HAVANA gene 131497479 131500191 2713.0 - 0 ENSG00000176868.2 antisense AL358781.1 2 OTTHUMG00000186801.1 +61609 chr9 HAVANA gene 131373636 131500197 12390.0 + 0 ENSG00000130723.19 protein_coding PRRC2B 2 OTTHUMG00000020827.5 ncRNA_host +61610 chr9 HAVANA gene 131516558 131522229 473.0 - 0 ENSG00000230289.1 antisense AL358781.2 2 OTTHUMG00000020824.1 +61611 chr9 HAVANA gene 131502902 131523806 6067.0 + 0 ENSG00000130714.15 protein_coding POMT1 2 OTTHUMG00000020826.2 +61612 chr9 HAVANA gene 131523801 131531268 2688.0 - 0 ENSG00000130717.12 protein_coding UCK1 2 OTTHUMG00000020823.3 +61613 chr9 HAVANA gene 131545514 131558620 1312.0 + 0 ENSG00000283526.1 protein_coding PRRT1B 2 OTTHUMG00000191656.1 +61614 chr9 ENSEMBL gene 131725168 131725467 300.0 - 0 ENSG00000240853.3 misc_RNA RN7SL328P 3 +61615 chr9 HAVANA gene 131576770 131740074 7002.0 - 0 ENSG00000107263.18 protein_coding RAPGEF1 2 OTTHUMG00000020829.5 ncRNA_host +61616 chr9 HAVANA gene 131782570 131782813 244.0 - 0 ENSG00000231018.1 processed_pseudogene EIF4A1P3 2 OTTHUMG00000020830.1 +61617 chr9 ENSEMBL gene 131782860 131782958 99.0 - 0 ENSG00000212395.1 snoRNA RF00272 3 +61618 chr9 HAVANA gene 131816192 131820988 829.0 + 0 ENSG00000236687.1 lincRNA AL160271.1 2 OTTHUMG00000020831.1 +61619 chr9 HAVANA gene 131860107 132079908 2107.0 - 0 ENSG00000160563.13 protein_coding MED27 2 OTTHUMG00000020833.5 +61620 chr9 HAVANA gene 132161676 132244534 7845.0 + 0 ENSG00000196358.10 protein_coding NTNG2 2 OTTHUMG00000020835.2 +61621 chr9 HAVANA gene 132261356 132354985 12140.0 - 0 ENSG00000107290.13 protein_coding SETX 2 OTTHUMG00000020834.4 +61622 chr9 HAVANA gene 132375548 132406851 3215.0 - 0 ENSG00000125482.12 protein_coding TTF1 2 OTTHUMG00000020836.2 +61623 chr9 ENSEMBL gene 132421641 132421690 50.0 + 0 ENSG00000252521.1 snRNA RNU5D-2P 3 +61624 chr9 HAVANA gene 132410043 132573317 2147.0 + 0 ENSG00000188523.8 protein_coding CFAP77 1 OTTHUMG00000131684.2 ncRNA_host +61625 chr9 HAVANA gene 132582185 132590266 2341.0 + 0 ENSG00000125492.9 protein_coding BARHL1 2 OTTHUMG00000020839.2 +61626 chr9 HAVANA gene 132592997 132670401 5546.0 - 0 ENSG00000125485.17 protein_coding DDX31 2 OTTHUMG00000020843.3 +61627 chr9 HAVANA gene 132670035 132694955 9043.0 + 0 ENSG00000125484.11 protein_coding GTF3C4 2 OTTHUMG00000020842.3 +61628 chr9 HAVANA gene 132768965 132770212 1019.0 - 0 ENSG00000224992.2 sense_intronic AL445645.1 2 OTTHUMG00000020846.2 overlapping_locus +61629 chr9 HAVANA gene 132725578 132878777 2731.0 - 0 ENSG00000165695.9 protein_coding AK8 2 OTTHUMG00000021009.1 overlapping_locus +61630 chr9 HAVANA gene 132878027 132890201 2823.0 + 0 ENSG00000165698.15 protein_coding SPACA9 2 OTTHUMG00000020847.1 +61631 chr9 ENSEMBL gene 132945707 132945771 65.0 + 0 ENSG00000263816.1 miRNA MIR548AW 3 +61632 chr9 HAVANA gene 132891348 132946874 17600.0 - 0 ENSG00000165699.14 protein_coding TSC1 2 OTTHUMG00000020844.13 +61633 chr9 HAVANA gene 132962511 132962667 157.0 + 0 ENSG00000234907.1 processed_pseudogene AL593851.1 1 OTTHUMG00000020850.3 pseudo_consens,overlapping_locus +61634 chr9 ENSEMBL gene 132963732 132963793 62.0 + 0 ENSG00000238558.1 snRNA RNU7-21P 3 +61635 chr9 HAVANA gene 132944000 132991687 6104.0 + 0 ENSG00000165702.14 protein_coding GFI1B 2 OTTHUMG00000020848.5 ncRNA_host +61636 chr9 HAVANA gene 133019486 133020874 1389.0 + 0 ENSG00000196205.8 processed_pseudogene EEF1A1P5 2 OTTHUMG00000020851.3 +61637 chr9 ENSEMBL gene 133051996 133052059 64.0 + 0 ENSG00000273932.1 miRNA MIR6877 3 +61638 chr9 HAVANA gene 133030675 133058503 3592.0 + 0 ENSG00000148308.17 protein_coding GTF3C5 2 OTTHUMG00000020856.7 ncRNA_host +61639 chr9 HAVANA gene 133061978 133071861 2384.0 + 0 ENSG00000170835.14 protein_coding CEL 2 OTTHUMG00000020855.1 +61640 chr9 HAVANA gene 133079900 133087355 3593.0 + 0 ENSG00000170827.9 transcribed_unprocessed_pseudogene CELP 2 OTTHUMG00000020857.7 +61641 chr9 HAVANA gene 133097720 133149334 7624.0 - 0 ENSG00000160271.15 protein_coding RALGDS 2 OTTHUMG00000020858.4 overlapping_locus +61642 chr9 HAVANA gene 133098121 133163914 3705.0 - 0 ENSG00000285245.1 protein_coding AL162417.1 2 OTTHUMG00000192407.1 overlapping_locus +61643 chr9 HAVANA gene 133152948 133163945 3713.0 - 0 ENSG00000148288.12 protein_coding GBGT1 2 OTTHUMG00000020853.3 overlapping_locus +61644 chr9 HAVANA gene 133205277 133209250 1135.0 - 0 ENSG00000171102.14 protein_coding OBP2B 2 OTTHUMG00000020860.4 +61645 chr9 HAVANA gene 133224905 133228591 505.0 - 0 ENSG00000119440.8 unprocessed_pseudogene LCN1P1 2 OTTHUMG00000020859.2 +61646 chr9 HAVANA gene 133250401 133275219 6359.0 - 0 ENSG00000175164.14 protein_coding ABO 2 OTTHUMG00000020872.6 reference_genome_error +61647 chr9 ENSEMBL gene 133302470 133302563 94.0 + 0 ENSG00000201843.1 misc_RNA RF00019 3 +61648 chr9 HAVANA gene 133317794 133318469 223.0 + 0 ENSG00000204031.3 unprocessed_pseudogene LCN1P2 2 OTTHUMG00000020863.2 +61649 chr9 HAVANA gene 133328774 133336398 4626.0 - 0 ENSG00000148296.6 protein_coding SURF6 2 OTTHUMG00000020871.3 +61650 chr9 ENSEMBL gene 133337728 133337824 97.0 - 0 ENSG00000201451.1 misc_RNA RF00019 3 +61651 chr9 HAVANA gene 133338990 133339465 476.0 + 0 ENSG00000230064.1 processed_pseudogene AL772161.1 2 OTTHUMG00000020861.2 +61652 chr9 HAVANA gene 133338323 133348131 7224.0 - 0 ENSG00000148297.15 protein_coding MED22 2 OTTHUMG00000020869.11 +61653 chr9 ENSEMBL gene 133349396 133349470 75.0 + 0 ENSG00000206611.1 snoRNA SNORD24 3 +61654 chr9 ENSEMBL gene 133350095 133350168 74.0 + 0 ENSG00000200831.1 snoRNA SNORD36B 3 +61655 chr9 ENSEMBL gene 133350456 133350528 73.0 + 0 ENSG00000199744.1 snoRNA SNORD36A 3 +61656 chr9 ENSEMBL gene 133350847 133350912 66.0 + 0 ENSG00000252542.1 snoRNA SNORD36C 3 +61657 chr9 HAVANA gene 133348214 133351426 2242.0 + 0 ENSG00000148303.16 protein_coding RPL7A 2 OTTHUMG00000020864.2 ncRNA_host +61658 chr9 HAVANA gene 133351755 133356676 1761.0 - 0 ENSG00000148290.9 protein_coding SURF1 2 OTTHUMG00000020866.5 +61659 chr9 HAVANA gene 133356552 133361169 1008.0 + 0 ENSG00000148291.9 protein_coding SURF2 2 OTTHUMG00000020867.2 +61660 chr9 HAVANA gene 133361449 133376166 3446.0 - 0 ENSG00000148248.13 protein_coding SURF4 2 OTTHUMG00000020868.2 +61661 chr9 HAVANA gene 133376367 133406096 4408.0 + 0 ENSG00000198870.7 protein_coding STKLD1 2 OTTHUMG00000020862.2 +61662 chr9 HAVANA gene 133406059 133418096 2654.0 - 0 ENSG00000148300.11 protein_coding REXO4 2 OTTHUMG00000020870.7 +61663 chr9 HAVANA gene 133414358 133459402 5708.0 + 0 ENSG00000160323.18 protein_coding ADAMTS13 2 OTTHUMG00000020876.4 +61664 chr9 HAVANA gene 133459965 133470848 3520.0 + 0 ENSG00000160325.14 protein_coding CACFD1 2 OTTHUMG00000020875.2 +61665 chr9 HAVANA gene 133471095 133479137 3540.0 - 0 ENSG00000160326.13 protein_coding SLC2A6 2 OTTHUMG00000020874.3 +61666 chr9 HAVANA gene 133514586 133528612 1008.0 - 0 ENSG00000187616.4 protein_coding MYMK 2 OTTHUMG00000131685.3 +61667 chr9 HAVANA gene 133532164 133575519 4677.0 + 0 ENSG00000197859.9 protein_coding ADAMTSL2 2 OTTHUMG00000131706.3 +61668 chr9 HAVANA gene 133578415 133586197 1353.0 - 0 ENSG00000196990.8 protein_coding FAM163B 2 OTTHUMG00000159557.1 +61669 chr9 HAVANA gene 133611798 133633099 1990.0 - 0 ENSG00000261018.1 antisense AC002101.1 2 OTTHUMG00000175612.1 +61670 chr9 HAVANA gene 133654586 133657313 2139.0 - 0 ENSG00000225756.1 antisense DBH-AS1 2 OTTHUMG00000020877.1 +61671 chr9 HAVANA gene 133635348 133659344 3776.0 + 0 ENSG00000123454.11 protein_coding DBH 1 OTTHUMG00000020878.4 +61672 chr9 HAVANA gene 133663560 133739955 5120.0 - 0 ENSG00000123453.17 protein_coding SARDH 2 OTTHUMG00000020879.4 +61673 chr9 HAVANA gene 133761894 133992604 5682.0 - 0 ENSG00000160293.16 protein_coding VAV2 2 OTTHUMG00000020882.1 +61674 chr9 HAVANA gene 134025439 134034666 5994.0 + 0 ENSG00000235106.9 protein_coding BRD3OS 2 OTTHUMG00000020880.6 +61675 chr9 HAVANA gene 134054290 134058805 2112.0 + 0 ENSG00000235138.1 antisense AL445931.1 2 OTTHUMG00000020881.1 +61676 chr9 HAVANA gene 134030305 134068535 6876.0 - 0 ENSG00000169925.16 protein_coding BRD3 2 OTTHUMG00000021004.7 +61677 chr9 HAVANA gene 134078904 134079444 541.0 + 0 ENSG00000271525.1 processed_pseudogene ARF4P1 1 OTTHUMG00000184710.1 pseudo_consens +61678 chr9 HAVANA gene 134132242 134135772 974.0 - 0 ENSG00000273249.1 antisense BX649632.1 2 OTTHUMG00000186051.1 +61679 chr9 HAVANA gene 134135365 134159968 3629.0 + 0 ENSG00000196363.9 protein_coding WDR5 2 OTTHUMG00000131707.3 +61680 chr9 ENSEMBL gene 134164439 134164564 126.0 - 0 ENSG00000221676.1 snRNA RNU6ATAC 3 +61681 chr9 HAVANA gene 134168769 134169340 572.0 + 0 ENSG00000273473.1 lincRNA BX649601.1 2 OTTHUMG00000186052.1 +61682 chr9 HAVANA gene 134293931 134295397 743.0 - 0 ENSG00000223729.1 lincRNA LINC02247 2 OTTHUMG00000020883.2 +61683 chr9 HAVANA gene 134298463 134300413 1951.0 + 0 ENSG00000279929.1 TEC AL354796.1 2 OTTHUMG00000175780.1 +61684 chr9 ENSEMBL gene 134379411 134379472 62.0 + 0 ENSG00000263897.1 miRNA MIR4669 3 +61685 chr9 HAVANA gene 134317098 134440585 11083.0 + 0 ENSG00000186350.10 protein_coding RXRA 2 OTTHUMG00000020887.3 ncRNA_host +61686 chr9 HAVANA gene 134505472 134521442 450.0 + 0 ENSG00000223795.2 lincRNA AL669970.1 2 OTTHUMG00000020884.2 +61687 chr9 HAVANA gene 134527182 134545244 428.0 + 0 ENSG00000228877.2 lincRNA AL669970.3 1 OTTHUMG00000020886.2 +61688 chr9 HAVANA gene 134552738 134553897 280.0 + 0 ENSG00000227150.1 lincRNA AL669970.2 1 OTTHUMG00000020885.1 +61689 chr9 HAVANA gene 134649385 134652843 336.0 - 0 ENSG00000204011.4 antisense COL5A1-AS1 2 OTTHUMG00000020890.2 +61690 chr9 HAVANA gene 134641774 134844843 11189.0 + 0 ENSG00000130635.15 protein_coding COL5A1 1 OTTHUMG00000020891.4 +61691 chr9 ENSEMBL gene 134849298 134849369 72.0 - 0 ENSG00000264744.1 miRNA MIR3689C 3 +61692 chr9 ENSEMBL gene 134849487 134849564 78.0 - 0 ENSG00000265872.1 miRNA MIR3689A 3 +61693 chr9 ENSEMBL gene 134849609 134849682 74.0 - 0 ENSG00000265848.1 miRNA MIR3689D1 3 +61694 chr9 ENSEMBL gene 134850125 134850272 148.0 - 0 ENSG00000264163.1 miRNA MIR3689B 3 +61695 chr9 ENSEMBL gene 134850277 134850356 80.0 - 0 ENSG00000264136.1 miRNA MIR3689D2 3 +61696 chr9 ENSEMBL gene 134850570 134850641 72.0 - 0 ENSG00000266827.1 miRNA MIR3689E 3 +61697 chr9 ENSEMBL gene 134850742 134850807 66.0 - 0 ENSG00000266514.1 miRNA MIR3689F 3 +61698 chr9 HAVANA gene 134868236 134868475 240.0 + 0 ENSG00000232355.2 unprocessed_pseudogene AL603650.1 2 OTTHUMG00000020893.2 +61699 chr9 HAVANA gene 134880812 134887520 1057.0 + 0 ENSG00000160339.15 protein_coding FCN2 2 OTTHUMG00000020892.1 +61700 chr9 HAVANA gene 134905890 134917963 4981.0 - 0 ENSG00000085265.10 protein_coding FCN1 2 OTTHUMG00000020895.1 +61701 chr9 HAVANA gene 134937151 134943195 462.0 + 0 ENSG00000236403.1 lincRNA AL353611.1 2 OTTHUMG00000020894.1 +61702 chr9 HAVANA gene 134992958 134995854 2897.0 + 0 ENSG00000279935.1 TEC AL353611.2 2 OTTHUMG00000175584.1 +61703 chr9 HAVANA gene 135075422 135121179 6123.0 + 0 ENSG00000130558.19 protein_coding OLFM1 1 OTTHUMG00000020897.4 +61704 chr9 HAVANA gene 135204722 135237597 527.0 - 0 ENSG00000227958.1 lincRNA AL390778.1 2 OTTHUMG00000020899.1 +61705 chr9 HAVANA gene 135245696 135252708 886.0 - 0 ENSG00000233936.1 lincRNA AL390778.2 1 OTTHUMG00000020898.1 +61706 chr9 HAVANA gene 135343249 135346562 1924.0 + 0 ENSG00000178243.4 lincRNA C9orf62 1 OTTHUMG00000020900.2 +61707 chr9 HAVANA gene 135352684 135354220 390.0 + 0 ENSG00000235572.1 lincRNA AL353615.1 1 OTTHUMG00000020901.2 +61708 chr9 HAVANA gene 135447446 135450154 1359.0 + 0 ENSG00000224682.1 processed_pseudogene SOCS5P2 1 OTTHUMG00000020907.1 pseudo_consens +61709 chr9 HAVANA gene 135462727 135480777 3750.0 - 0 ENSG00000225361.3 antisense PPP1R26-AS1 1 OTTHUMG00000020905.3 +61710 chr9 HAVANA gene 135479079 135488893 5276.0 + 0 ENSG00000196422.10 protein_coding PPP1R26 2 OTTHUMG00000020904.3 +61711 chr9 HAVANA gene 135495181 135501734 1864.0 - 0 ENSG00000160345.12 protein_coding C9orf116 2 OTTHUMG00000020902.2 +61712 chr9 HAVANA gene 135499984 135504673 2464.0 + 0 ENSG00000122140.10 protein_coding MRPS2 2 OTTHUMG00000020910.2 +61713 chr9 HAVANA gene 135503273 135506447 1117.0 - 0 ENSG00000226706.1 antisense AL161452.1 2 OTTHUMG00000020903.1 +61714 chr9 HAVANA gene 135521438 135526532 781.0 + 0 ENSG00000160349.9 protein_coding LCN1 2 OTTHUMG00000020908.1 +61715 chr9 HAVANA gene 135546139 135549969 1022.0 + 0 ENSG00000122136.13 protein_coding OBP2A 2 OTTHUMG00000020909.4 +61716 chr9 HAVANA gene 135561756 135566955 1454.0 + 0 ENSG00000122133.16 protein_coding PAEP 2 OTTHUMG00000020914.5 +61717 chr9 HAVANA gene 135574935 135587112 2746.0 + 0 ENSG00000237339.5 lincRNA LINC01502 2 OTTHUMG00000020912.1 +61718 chr9 HAVANA gene 135588002 135591975 526.0 + 0 ENSG00000224045.1 transcribed_unprocessed_pseudogene PAEPP1 2 OTTHUMG00000020913.2 +61719 chr9 HAVANA gene 135604345 135618952 835.0 + 0 ENSG00000236543.2 protein_coding AL354761.1 2 OTTHUMG00000153545.2 +61720 chr9 HAVANA gene 135623656 135639540 1526.0 - 0 ENSG00000204007.6 protein_coding GLT6D1 2 OTTHUMG00000020911.2 +61721 chr9 HAVANA gene 135663322 135666422 1105.0 + 0 ENSG00000148386.9 protein_coding LCN9 2 OTTHUMG00000020916.3 +61722 chr9 HAVANA gene 135693407 135699528 1987.0 - 0 ENSG00000165643.10 protein_coding SOHLH1 2 OTTHUMG00000020915.2 +61723 chr9 HAVANA gene 135702185 135795508 12183.0 + 0 ENSG00000107147.12 protein_coding KCNT1 1 OTTHUMG00000020917.11 +61724 chr9 HAVANA gene 135808487 135907228 8642.0 - 0 ENSG00000130559.18 protein_coding CAMSAP1 2 OTTHUMG00000020918.4 +61725 chr9 HAVANA gene 135907812 135913513 311.0 + 0 ENSG00000238058.1 antisense AL355574.1 2 OTTHUMG00000020919.2 +61726 chr9 HAVANA gene 135932969 135961380 2979.0 - 0 ENSG00000130560.8 protein_coding UBAC1 2 OTTHUMG00000020920.1 +61727 chr9 HAVANA gene 136006537 136095285 7212.0 - 0 ENSG00000148411.7 protein_coding NACC2 2 OTTHUMG00000020921.1 +61728 chr9 HAVANA gene 136107808 136109424 1334.0 - 0 ENSG00000260193.1 lincRNA AL138781.1 2 OTTHUMG00000175806.1 +61729 chr9 HAVANA gene 136114581 136118863 3396.0 - 0 ENSG00000238227.7 protein_coding TMEM250 1 OTTHUMG00000020922.4 +61730 chr9 HAVANA gene 136122521 136124363 1843.0 + 0 ENSG00000275329.1 lincRNA AL138781.2 2 OTTHUMG00000187245.1 +61731 chr9 HAVANA gene 136196250 136205128 3824.0 - 0 ENSG00000107187.16 protein_coding LHX3 2 OTTHUMG00000020924.5 +61732 chr9 HAVANA gene 136206333 136245841 4530.0 - 0 ENSG00000165661.16 protein_coding QSOX2 1 OTTHUMG00000020923.2 +61733 chr9 HAVANA gene 136249978 136251205 1228.0 + 0 ENSG00000279813.1 TEC CR392000.1 2 OTTHUMG00000192026.1 +61734 chr9 HAVANA gene 136263925 136267237 1994.0 + 0 ENSG00000283769.1 antisense CR392000.2 2 OTTHUMG00000191898.1 +61735 chr9 HAVANA gene 136249971 136306901 11628.0 - 0 ENSG00000260220.6 protein_coding CCDC187 2 OTTHUMG00000188591.3 +61736 chr9 HAVANA gene 136322303 136327323 5021.0 - 0 ENSG00000262075.3 lincRNA DKFZP434A062 2 OTTHUMG00000188592.1 +61737 chr9 HAVANA gene 136327476 136359605 5138.0 + 0 ENSG00000160360.12 protein_coding GPSM1 2 OTTHUMG00000020930.7 +61738 chr9 HAVANA gene 136359480 136363789 3144.0 - 0 ENSG00000213221.4 protein_coding DNLZ 2 OTTHUMG00000020931.2 overlapping_locus +61739 chr9 HAVANA gene 136361903 136373681 6699.0 - 0 ENSG00000187796.14 protein_coding CARD9 2 OTTHUMG00000020925.5 overlapping_locus +61740 chr9 HAVANA gene 136375577 136400168 5045.0 - 0 ENSG00000165684.4 protein_coding SNAPC4 2 OTTHUMG00000020929.2 +61741 chr9 HAVANA gene 136401922 136410609 3133.0 - 0 ENSG00000165689.16 protein_coding ENTR1 2 OTTHUMG00000020928.13 +61742 chr9 HAVANA gene 136410570 136423761 6590.0 + 0 ENSG00000165688.11 protein_coding PMPCA 2 OTTHUMG00000020926.4 +61743 chr9 HAVANA gene 136428619 136439823 6490.0 - 0 ENSG00000148384.12 protein_coding INPP5E 2 OTTHUMG00000020927.2 +61744 chr9 HAVANA gene 136440096 136483759 9975.0 - 0 ENSG00000148396.18 protein_coding SEC16A 2 OTTHUMG00000020932.6 +61745 chr9 HAVANA gene 136483495 136486067 2573.0 + 0 ENSG00000196366.3 lincRNA C9orf163 2 OTTHUMG00000131725.1 +61746 chr9 ENSEMBL gene 136519568 136519626 59.0 - 0 ENSG00000263403.1 miRNA MIR4673 3 +61747 chr9 HAVANA gene 136542881 136543835 864.0 + 0 ENSG00000227512.1 antisense AL592301.1 2 OTTHUMG00000020934.1 +61748 chr9 HAVANA gene 136494433 136545786 10377.0 - 0 ENSG00000148400.10 protein_coding NOTCH1 2 OTTHUMG00000020935.2 ncRNA_host +61749 chr9 ENSEMBL gene 136546173 136546259 87.0 - 0 ENSG00000265181.1 miRNA MIR4674 3 +61750 chr9 HAVANA gene 136546212 136549893 1088.0 + 0 ENSG00000237886.1 antisense NALT1 2 OTTHUMG00000020933.1 +61751 chr9 HAVANA gene 136612024 136617181 3406.0 - 0 ENSG00000279141.3 lincRNA LINC01451 2 OTTHUMG00000189535.1 +61752 chr9 HAVANA gene 136648610 136660421 557.0 - 0 ENSG00000228401.4 antisense HSPC324 2 OTTHUMG00000020937.1 +61753 chr9 ENSEMBL gene 136670602 136670686 85.0 + 0 ENSG00000199161.1 miRNA MIR126 3 +61754 chr9 HAVANA gene 136658856 136672678 2553.0 + 0 ENSG00000172889.15 protein_coding EGFL7 1 OTTHUMG00000020938.4 ncRNA_host +61755 chr9 HAVANA gene 136673143 136687423 1798.0 - 0 ENSG00000169692.12 protein_coding AGPAT2 2 OTTHUMG00000020936.2 +61756 chr9 HAVANA gene 136712570 136724050 2704.0 + 0 ENSG00000165716.10 protein_coding FAM69B 2 OTTHUMG00000020940.1 +61757 chr9 ENSEMBL gene 136726105 136726234 130.0 - 0 ENSG00000276161.1 snoRNA SNORA17B 3 +61758 chr9 ENSEMBL gene 136726104 136726239 136.0 - 0 ENSG00000280496.1 snoRNA SNORA17B 3 +61759 chr9 ENSEMBL gene 136726748 136726879 132.0 - 0 ENSG00000281808.1 snoRNA RF00560 3 +61760 chr9 ENSEMBL gene 136726747 136726879 133.0 - 0 ENSG00000274998.1 snoRNA SNORA17A 3 +61761 chr9 HAVANA gene 136721366 136728184 4345.0 - 0 ENSG00000233016.6 antisense SNHG7 2 OTTHUMG00000020949.1 ncRNA_host +61762 chr9 HAVANA gene 136728953 136729855 411.0 - 0 ENSG00000274356.1 unprocessed_pseudogene AL355987.5 2 OTTHUMG00000187869.1 +61763 chr9 HAVANA gene 136738167 136743356 4263.0 - 0 ENSG00000187922.13 protein_coding LCN10 2 OTTHUMG00000150428.3 overlapping_locus +61764 chr9 ENSEMBL gene 136746893 136746970 78.0 - 0 ENSG00000278756.1 miRNA MIR6722 3 +61765 chr9 HAVANA gene 136738167 136748453 2651.0 - 0 ENSG00000204003.8 protein_coding AL355987.1 2 OTTHUMG00000180116.1 ncRNA_host,overlapping_locus +61766 chr9 HAVANA gene 136744011 136748528 1681.0 - 0 ENSG00000267206.5 protein_coding LCN6 2 OTTHUMG00000020941.4 ncRNA_host,overlapping_locus +61767 chr9 HAVANA gene 136754386 136758543 3038.0 - 0 ENSG00000204001.9 protein_coding LCN8 2 OTTHUMG00000020942.1 +61768 chr9 HAVANA gene 136759634 136766255 2887.0 - 0 ENSG00000177984.6 protein_coding LCN15 2 OTTHUMG00000020943.2 +61769 chr9 HAVANA gene 136779939 136780218 280.0 + 0 ENSG00000224662.2 processed_pseudogene ATP6V1G1P3 2 OTTHUMG00000020944.2 +61770 chr9 HAVANA gene 136791355 136793257 1443.0 + 0 ENSG00000244187.7 protein_coding TMEM141 2 OTTHUMG00000020945.8 overlapping_locus +61771 chr9 HAVANA gene 136791379 136800595 735.0 + 0 ENSG00000272896.1 protein_coding AL355987.3 2 OTTHUMG00000186332.2 overlapping_locus +61772 chr9 HAVANA gene 136796350 136807741 2964.0 + 0 ENSG00000213213.13 protein_coding CCDC183 2 OTTHUMG00000159445.2 overlapping_locus +61773 chr9 HAVANA gene 136803927 136808848 2386.0 - 0 ENSG00000228544.1 antisense CCDC183-AS1 2 OTTHUMG00000020946.1 +61774 chr9 HAVANA gene 136799223 136810042 4335.0 + 0 ENSG00000273066.5 processed_transcript AL355987.4 2 OTTHUMG00000186354.1 overlapping_locus +61775 chr9 HAVANA gene 136812788 136815536 1963.0 - 0 ENSG00000213212.3 processed_pseudogene NCLP1 1 OTTHUMG00000020939.3 pseudo_consens +61776 chr9 HAVANA gene 136800366 136829466 561.0 + 0 ENSG00000272679.1 processed_transcript AL355987.2 2 OTTHUMG00000186334.1 overlapping_locus +61777 chr9 ENSEMBL gene 136830957 136831023 67.0 + 0 ENSG00000265806.1 miRNA MIR4292 3 +61778 chr9 HAVANA gene 136807943 136841187 10178.0 + 0 ENSG00000196642.18 protein_coding RABL6 2 OTTHUMG00000020947.12 ncRNA_host,overlapping_locus +61779 chr9 HAVANA gene 136844415 136848801 4387.0 + 0 ENSG00000232434.2 protein_coding AJM1 2 OTTHUMG00000187258.2 +61780 chr9 HAVANA gene 136848724 136851027 1612.0 + 0 ENSG00000054148.17 protein_coding PHPT1 2 OTTHUMG00000020950.2 overlapping_locus +61781 chr9 HAVANA gene 136850943 136860799 5469.0 + 0 ENSG00000177943.13 protein_coding MAMDC4 2 OTTHUMG00000020951.7 overlapping_locus +61782 chr9 HAVANA gene 136862119 136866286 1200.0 - 0 ENSG00000107223.12 protein_coding EDF1 2 OTTHUMG00000020948.2 +61783 chr9 ENSEMBL gene 136886733 136886803 71.0 + 0 ENSG00000266507.1 miRNA MIR4479 3 +61784 chr9 HAVANA gene 136881912 136926607 3663.0 + 0 ENSG00000127191.17 protein_coding TRAF2 2 OTTHUMG00000020952.3 ncRNA_host +61785 chr9 HAVANA gene 136935840 136937161 1322.0 + 0 ENSG00000213590.2 processed_pseudogene AL807752.1 2 OTTHUMG00000020966.1 +61786 chr9 HAVANA gene 136937169 136937988 820.0 - 0 ENSG00000260190.1 sense_overlapping AL807752.5 2 OTTHUMG00000175609.1 +61787 chr9 HAVANA gene 136940435 136944696 3252.0 - 0 ENSG00000159069.13 protein_coding FBXW5 2 OTTHUMG00000020967.4 +61788 chr9 HAVANA gene 136945185 136946975 1152.0 + 0 ENSG00000176919.12 protein_coding C8G 2 OTTHUMG00000020955.4 +61789 chr9 HAVANA gene 136949551 136955497 2819.0 + 0 ENSG00000184925.11 protein_coding LCN12 2 OTTHUMG00000020968.5 +61790 chr9 HAVANA gene 136969243 136971990 978.0 + 0 ENSG00000198454.2 lincRNA PRR31 2 OTTHUMG00000020969.1 +61791 chr9 HAVANA gene 136975092 136981742 2711.0 + 0 ENSG00000107317.12 protein_coding PTGDS 2 OTTHUMG00000020957.6 overlapping_locus +61792 chr9 HAVANA gene 136977518 136985435 989.0 + 0 ENSG00000284341.1 protein_coding AL807752.7 2 OTTHUMG00000191930.1 overlapping_locus +61793 chr9 HAVANA gene 136981904 136986410 4052.0 + 0 ENSG00000214402.6 protein_coding LCNL1 2 OTTHUMG00000159546.1 overlapping_locus +61794 chr9 HAVANA gene 136992418 136993984 1367.0 + 0 ENSG00000148362.10 protein_coding PAXX 2 OTTHUMG00000020971.2 +61795 chr9 HAVANA gene 136994635 136996803 1177.0 - 0 ENSG00000169583.12 protein_coding CLIC3 2 OTTHUMG00000020954.3 +61796 chr9 HAVANA gene 137007227 137028922 11514.0 - 0 ENSG00000107331.16 protein_coding ABCA2 2 OTTHUMG00000020958.5 +61797 chr9 HAVANA gene 137030174 137033010 2584.0 - 0 ENSG00000180549.7 protein_coding FUT7 2 OTTHUMG00000020964.1 overlapping_locus +61798 chr9 HAVANA gene 137027464 137037957 4990.0 + 0 ENSG00000180539.7 antisense C9orf139 2 OTTHUMG00000020959.3 +61799 chr9 HAVANA gene 137031241 137040436 890.0 - 0 ENSG00000279073.3 protein_coding AL807752.6 2 OTTHUMG00000189401.1 overlapping_locus +61800 chr9 HAVANA gene 137039470 137046203 2737.0 - 0 ENSG00000107281.9 protein_coding NPDC1 2 OTTHUMG00000020956.3 overlapping_locus +61801 chr9 HAVANA gene 137052662 137053375 580.0 + 0 ENSG00000236394.2 antisense AL807752.4 2 OTTHUMG00000020960.2 +61802 chr9 HAVANA gene 137048098 137054045 2633.0 - 0 ENSG00000054179.11 protein_coding ENTPD2 2 OTTHUMG00000020953.4 +61803 chr9 HAVANA gene 137057663 137062461 301.0 + 0 ENSG00000229257.2 antisense AL807752.2 2 OTTHUMG00000020974.2 +61804 chr9 HAVANA gene 137063535 137064581 748.0 + 0 ENSG00000231864.2 antisense AL807752.3 2 OTTHUMG00000020975.2 +61805 chr9 HAVANA gene 137062124 137070588 3848.0 - 0 ENSG00000186193.8 protein_coding SAPCD2 2 OTTHUMG00000020961.3 +61806 chr9 HAVANA gene 137077501 137084539 5283.0 + 0 ENSG00000197355.10 protein_coding UAP1L1 2 OTTHUMG00000020962.4 +61807 chr9 HAVANA gene 137084946 137086817 1872.0 - 0 ENSG00000268996.3 antisense MAN1B1-DT 2 OTTHUMG00000187259.3 +61808 chr9 ENSEMBL gene 137094345 137094430 86.0 + 0 ENSG00000199411.1 snoRNA RF00153 3 +61809 chr9 HAVANA gene 137086927 137109187 8331.0 + 0 ENSG00000177239.14 protein_coding MAN1B1 1 OTTHUMG00000020978.6 ncRNA_host +61810 chr9 HAVANA gene 137110542 137115177 2820.0 - 0 ENSG00000176978.13 protein_coding DPP7 2 OTTHUMG00000020977.3 +61811 chr9 HAVANA gene 137138390 137168762 6729.0 + 0 ENSG00000176884.14 protein_coding GRIN1 2 OTTHUMG00000020976.6 +61812 chr9 ENSEMBL gene 137169186 137169270 85.0 - 0 ENSG00000263697.1 miRNA MIR3621 3 +61813 chr9 HAVANA gene 137168758 137170051 1209.0 - 0 ENSG00000184709.7 protein_coding LRRC26 2 OTTHUMG00000020980.1 ncRNA_host,overlapping_locus +61814 chr9 HAVANA gene 137168854 137171984 460.0 - 0 ENSG00000261793.1 protein_coding AL929554.1 2 OTTHUMG00000176413.2 ncRNA_host,overlapping_locus +61815 chr9 HAVANA gene 137170858 137172409 1139.0 - 0 ENSG00000185863.7 protein_coding TMEM210 2 OTTHUMG00000020981.3 overlapping_locus +61816 chr9 HAVANA gene 137174784 137188549 5447.0 - 0 ENSG00000176248.8 protein_coding ANAPC2 2 OTTHUMG00000020983.2 +61817 chr9 HAVANA gene 137188647 137190370 1183.0 + 0 ENSG00000176101.11 protein_coding SSNA1 2 OTTHUMG00000020982.2 +61818 chr9 HAVANA gene 137191617 137204193 5338.0 - 0 ENSG00000176058.12 protein_coding TPRN 2 OTTHUMG00000020984.4 overlapping_locus +61819 chr9 HAVANA gene 137204082 137205638 1557.0 - 0 ENSG00000187713.6 protein_coding TMEM203 2 OTTHUMG00000020985.2 overlapping_locus +61820 chr9 HAVANA gene 137205685 137217009 2836.0 + 0 ENSG00000188566.13 protein_coding NDOR1 2 OTTHUMG00000020986.4 +61821 chr9 HAVANA gene 137217452 137219361 1910.0 + 0 ENSG00000284976.1 protein_coding BX255925.3 2 OTTHUMG00000192535.1 +61822 chr9 HAVANA gene 137220247 137221581 1150.0 - 0 ENSG00000212864.3 protein_coding RNF208 2 OTTHUMG00000131782.2 +61823 chr9 HAVANA gene 137224635 137226311 1297.0 + 0 ENSG00000197191.4 protein_coding CYSRT1 2 OTTHUMG00000153383.1 +61824 chr9 HAVANA gene 137227271 137229638 1798.0 + 0 ENSG00000233198.3 protein_coding RNF224 2 OTTHUMG00000187399.1 +61825 chr9 HAVANA gene 137230757 137236554 2303.0 + 0 ENSG00000198569.9 protein_coding SLC34A3 2 OTTHUMG00000131780.1 +61826 chr9 HAVANA gene 137241213 137243707 2111.0 + 0 ENSG00000188229.5 protein_coding TUBB4B 2 OTTHUMG00000131783.2 +61827 chr9 HAVANA gene 137243584 137247770 1801.0 - 0 ENSG00000188163.7 protein_coding FAM166A 2 OTTHUMG00000159545.3 +61828 chr9 HAVANA gene 137251261 137253483 1611.0 + 0 ENSG00000197768.10 protein_coding STPG3 2 OTTHUMG00000187404.3 +61829 chr9 HAVANA gene 137250219 137253497 1701.0 - 0 ENSG00000275549.1 antisense STPG3-AS1 2 OTTHUMG00000187409.1 +61830 chr9 HAVANA gene 137255173 137273546 2698.0 + 0 ENSG00000188986.6 protein_coding NELFB 2 OTTHUMG00000131778.2 +61831 chr9 HAVANA gene 137277749 137282641 4148.0 + 0 ENSG00000198113.2 protein_coding TOR4A 2 OTTHUMG00000131779.1 +61832 chr9 HAVANA gene 137286112 137287236 515.0 + 0 ENSG00000270259.2 processed_pseudogene BX255925.2 1 OTTHUMG00000184711.2 pseudo_consens +61833 chr9 HAVANA gene 137293868 137295721 1854.0 - 0 ENSG00000260996.1 sense_overlapping BX255925.1 2 OTTHUMG00000175633.1 +61834 chr9 HAVANA gene 137300482 137302251 1770.0 - 0 ENSG00000198435.3 protein_coding NRARP 2 OTTHUMG00000156150.1 retrogene +61835 chr9 HAVANA gene 137306896 137423262 7626.0 - 0 ENSG00000187609.15 protein_coding EXD3 2 OTTHUMG00000156149.3 +61836 chr9 HAVANA gene 137423350 137434406 1678.0 + 0 ENSG00000188747.8 protein_coding NOXA1 2 OTTHUMG00000131781.1 +61837 chr9 HAVANA gene 137434364 137441816 2836.0 - 0 ENSG00000188833.9 protein_coding ENTPD8 2 OTTHUMG00000131831.4 +61838 chr9 ENSEMBL gene 137450026 137450086 61.0 - 0 ENSG00000284317.1 miRNA MIR7114 3 +61839 chr9 HAVANA gene 137447573 137459334 4912.0 - 0 ENSG00000165802.22 protein_coding NSMF 2 OTTHUMG00000020989.4 ncRNA_host +61840 chr9 HAVANA gene 137459953 137550534 9976.0 - 0 ENSG00000130653.15 protein_coding PNPLA7 2 OTTHUMG00000020990.10 +61841 chr9 HAVANA gene 137551199 137552555 1262.0 + 0 ENSG00000182154.7 protein_coding MRPL41 2 OTTHUMG00000020987.1 +61842 chr9 HAVANA gene 137554904 137578935 4475.0 - 0 ENSG00000148399.12 protein_coding DPH7 2 OTTHUMG00000020991.1 +61843 chr9 HAVANA gene 137582079 137590490 2372.0 - 0 ENSG00000165724.5 protein_coding ZMYND19 2 OTTHUMG00000020992.1 +61844 chr9 HAVANA gene 137605654 137615360 3821.0 + 0 ENSG00000197070.13 protein_coding ARRDC1 2 OTTHUMG00000020993.4 overlapping_locus +61845 chr9 HAVANA gene 137615332 137618906 2387.0 - 0 ENSG00000203993.4 antisense ARRDC1-AS1 2 OTTHUMG00000020988.2 +61846 chr9 ENSEMBL gene 137638128 137638408 281.0 - 0 ENSG00000274841.1 misc_RNA RF00017 3 +61847 chr9 HAVANA gene 137640986 137641547 562.0 - 0 ENSG00000233998.1 processed_pseudogene SETP5 1 OTTHUMG00000020994.2 pseudo_consens +61848 chr9 HAVANA gene 137605744 137711018 235.0 + 0 ENSG00000283411.1 processed_transcript AL590627.2 2 OTTHUMG00000191829.1 overlapping_locus +61849 chr9 HAVANA gene 137776539 137789235 5276.0 - 0 ENSG00000255585.3 transcribed_processed_pseudogene AL590627.1 1 OTTHUMG00000020996.3 pseudo_consens +61850 chr9 ENSEMBL gene 137838419 137838516 98.0 + 0 ENSG00000207693.1 miRNA MIR602 3 +61851 chr9 HAVANA gene 137618963 137870016 22217.0 + 0 ENSG00000181090.20 protein_coding EHMT1 1 OTTHUMG00000020995.14 ncRNA_host,overlapping_locus +61852 chr9 HAVANA gene 137867925 137892570 3373.0 - 0 ENSG00000203987.2 antisense AL772363.1 2 OTTHUMG00000180102.1 +61853 chr9 HAVANA gene 137877789 138124624 9897.0 + 0 ENSG00000148408.12 protein_coding CACNA1B 2 OTTHUMG00000021002.3 +61854 chr9 HAVANA gene 138129399 138129526 128.0 + 0 ENSG00000276388.1 unprocessed_pseudogene AL591424.2 2 OTTHUMG00000187874.1 +61855 chr9 HAVANA gene 138137095 138143864 1213.0 + 0 ENSG00000229926.1 unprocessed_pseudogene AL591424.1 2 OTTHUMG00000020997.1 +61856 chr9 HAVANA gene 138150075 138177433 2814.0 + 0 ENSG00000159247.13 transcribed_unprocessed_pseudogene TUBBP5 1 OTTHUMG00000021001.4 pseudo_consens +61857 chr9 HAVANA gene 138177426 138179774 872.0 - 0 ENSG00000278130.1 unprocessed_pseudogene AL591424.3 2 OTTHUMG00000187880.1 +61858 chr9 HAVANA gene 138199933 138203325 538.0 - 0 ENSG00000237419.1 lincRNA AL954642.1 2 OTTHUMG00000020999.1 +61859 chr9 HAVANA gene 138217068 138253217 2073.0 + 0 ENSG00000233013.10 transcribed_unprocessed_pseudogene FAM157B 1 OTTHUMG00000021000.4 pseudo_consens +61860 chr9 ENSEMBL gene 138259595 138259698 104.0 + 0 ENSG00000223256.1 snRNA RNU6-785P 3 +61861 chr9 HAVANA gene 138286248 138286430 183.0 + 0 ENSG00000250210.5 unprocessed_pseudogene FO082796.1 2 OTTHUMG00000191542.1 +61862 chrM ENSEMBL gene 577 647 71.0 + 0 ENSG00000210049.1 Mt_tRNA MT-TF 3 +61863 chrM ENSEMBL gene 648 1601 954.0 + 0 ENSG00000211459.2 Mt_rRNA MT-RNR1 3 +61864 chrM ENSEMBL gene 1602 1670 69.0 + 0 ENSG00000210077.1 Mt_tRNA MT-TV 3 +61865 chrM ENSEMBL gene 1671 3229 1559.0 + 0 ENSG00000210082.2 Mt_rRNA MT-RNR2 3 +61866 chrM ENSEMBL gene 3230 3304 75.0 + 0 ENSG00000209082.1 Mt_tRNA MT-TL1 3 +61867 chrM ENSEMBL gene 3307 4262 956.0 + 0 ENSG00000198888.2 protein_coding MT-ND1 3 +61868 chrM ENSEMBL gene 4263 4331 69.0 + 0 ENSG00000210100.1 Mt_tRNA MT-TI 3 +61869 chrM ENSEMBL gene 4329 4400 72.0 - 0 ENSG00000210107.1 Mt_tRNA MT-TQ 3 +61870 chrM ENSEMBL gene 4402 4469 68.0 + 0 ENSG00000210112.1 Mt_tRNA MT-TM 3 +61871 chrM ENSEMBL gene 4470 5511 1042.0 + 0 ENSG00000198763.3 protein_coding MT-ND2 3 +61872 chrM ENSEMBL gene 5512 5579 68.0 + 0 ENSG00000210117.1 Mt_tRNA MT-TW 3 +61873 chrM ENSEMBL gene 5587 5655 69.0 - 0 ENSG00000210127.1 Mt_tRNA MT-TA 3 +61874 chrM ENSEMBL gene 5657 5729 73.0 - 0 ENSG00000210135.1 Mt_tRNA MT-TN 3 +61875 chrM ENSEMBL gene 5761 5826 66.0 - 0 ENSG00000210140.1 Mt_tRNA MT-TC 3 +61876 chrM ENSEMBL gene 5826 5891 66.0 - 0 ENSG00000210144.1 Mt_tRNA MT-TY 3 +61877 chrM ENSEMBL gene 5904 7445 1542.0 + 0 ENSG00000198804.2 protein_coding MT-CO1 3 +61878 chrM ENSEMBL gene 7446 7514 69.0 - 0 ENSG00000210151.2 Mt_tRNA MT-TS1 3 +61879 chrM ENSEMBL gene 7518 7585 68.0 + 0 ENSG00000210154.1 Mt_tRNA MT-TD 3 +61880 chrM ENSEMBL gene 7586 8269 684.0 + 0 ENSG00000198712.1 protein_coding MT-CO2 3 +61881 chrM ENSEMBL gene 8295 8364 70.0 + 0 ENSG00000210156.1 Mt_tRNA MT-TK 3 +61882 chrM ENSEMBL gene 8366 8572 207.0 + 0 ENSG00000228253.1 protein_coding MT-ATP8 3 +61883 chrM ENSEMBL gene 8527 9207 681.0 + 0 ENSG00000198899.2 protein_coding MT-ATP6 3 +61884 chrM ENSEMBL gene 9207 9990 784.0 + 0 ENSG00000198938.2 protein_coding MT-CO3 3 +61885 chrM ENSEMBL gene 9991 10058 68.0 + 0 ENSG00000210164.1 Mt_tRNA MT-TG 3 +61886 chrM ENSEMBL gene 10059 10404 346.0 + 0 ENSG00000198840.2 protein_coding MT-ND3 3 +61887 chrM ENSEMBL gene 10405 10469 65.0 + 0 ENSG00000210174.1 Mt_tRNA MT-TR 3 +61888 chrM ENSEMBL gene 10470 10766 297.0 + 0 ENSG00000212907.2 protein_coding MT-ND4L 3 +61889 chrM ENSEMBL gene 10760 12137 1378.0 + 0 ENSG00000198886.2 protein_coding MT-ND4 3 +61890 chrM ENSEMBL gene 12138 12206 69.0 + 0 ENSG00000210176.1 Mt_tRNA MT-TH 3 +61891 chrM ENSEMBL gene 12207 12265 59.0 + 0 ENSG00000210184.1 Mt_tRNA MT-TS2 3 +61892 chrM ENSEMBL gene 12266 12336 71.0 + 0 ENSG00000210191.1 Mt_tRNA MT-TL2 3 +61893 chrM ENSEMBL gene 12337 14148 1812.0 + 0 ENSG00000198786.2 protein_coding MT-ND5 3 +61894 chrM ENSEMBL gene 14149 14673 525.0 - 0 ENSG00000198695.2 protein_coding MT-ND6 3 +61895 chrM ENSEMBL gene 14674 14742 69.0 - 0 ENSG00000210194.1 Mt_tRNA MT-TE 3 +61896 chrM ENSEMBL gene 14747 15887 1141.0 + 0 ENSG00000198727.2 protein_coding MT-CYB 3 +61897 chrM ENSEMBL gene 15888 15953 66.0 + 0 ENSG00000210195.2 Mt_tRNA MT-TT 3 +61898 chrM ENSEMBL gene 15956 16023 68.0 - 0 ENSG00000210196.2 Mt_tRNA MT-TP 3 +61899 chrX HAVANA gene 253743 255091 259.0 + 0 ENSG00000228572.7 unprocessed_pseudogene AL954722.1 2 OTTHUMG00000046372.2 +61900 chrX HAVANA gene 276322 303356 6191.0 + 0 ENSG00000182378.13 protein_coding PLCXD1 2 OTTHUMG00000022693.5 +61901 chrX HAVANA gene 304529 318819 2964.0 - 0 ENSG00000178605.13 protein_coding GTPBP6 2 OTTHUMG00000022694.3 +61902 chrX HAVANA gene 320990 321851 428.0 + 0 ENSG00000226179.6 antisense LINC00685 2 OTTHUMG00000021049.1 +61903 chrX HAVANA gene 333963 386955 9015.0 - 0 ENSG00000167393.17 protein_coding PPP2R3B 2 OTTHUMG00000021052.3 +61904 chrX ENSEMBL gene 388100 388389 290.0 - 0 ENSG00000275287.5 misc_RNA RF00017 3 +61905 chrX HAVANA gene 386980 405579 484.0 + 0 ENSG00000281849.3 antisense AL732314.6 2 OTTHUMG00000189992.1 +61906 chrX HAVANA gene 419157 421980 515.0 + 0 ENSG00000280767.3 lincRNA AL732314.4 2 OTTHUMG00000189993.1 +61907 chrX HAVANA gene 523775 524102 328.0 - 0 ENSG00000234958.6 processed_pseudogene FABP5P13 1 OTTHUMG00000021050.1 pseudo_consens +61908 chrX HAVANA gene 545236 545352 117.0 - 0 ENSG00000229232.6 processed_pseudogene KRT18P53 2 OTTHUMG00000021051.1 +61909 chrX HAVANA gene 624344 659411 4384.0 + 0 ENSG00000185960.14 protein_coding SHOX 2 OTTHUMG00000021053.5 +61910 chrX HAVANA gene 990221 994365 588.0 + 0 ENSG00000237531.6 lincRNA AL672277.1 2 OTTHUMG00000021054.1 +61911 chrX HAVANA gene 1008503 1010101 730.0 - 0 ENSG00000225661.7 processed_pseudogene RPL14P5 1 OTTHUMG00000021055.1 pseudo_consens +61912 chrX HAVANA gene 1187549 1212750 2010.0 - 0 ENSG00000205755.11 protein_coding CRLF2 2 OTTHUMG00000067432.2 +61913 chrX ENSEMBL gene 1293918 1293992 75.0 + 0 ENSG00000265658.6 miRNA MIR3690 3 +61914 chrX ENSEMBL gene 1300256 1300375 120.0 - 0 ENSG00000223274.6 rRNA_pseudogene RNA5SP498 3 +61915 chrX HAVANA gene 1268800 1310381 3830.0 + 0 ENSG00000198223.16 protein_coding CSF2RA 2 OTTHUMG00000012533.8 ncRNA_host +61916 chrX HAVANA gene 1336616 1382689 1710.0 + 0 ENSG00000185291.11 protein_coding IL3RA 2 OTTHUMG00000021059.4 +61917 chrX HAVANA gene 1386152 1392724 2164.0 - 0 ENSG00000169100.13 protein_coding SLC25A6 2 OTTHUMG00000021058.1 +61918 chrX HAVANA gene 1396427 1399402 592.0 + 0 ENSG00000236871.7 lincRNA LINC00106 2 OTTHUMG00000021061.3 +61919 chrX HAVANA gene 1401769 1414028 1335.0 + 0 ENSG00000236017.8 antisense ASMTL-AS1 2 OTTHUMG00000021056.3 +61920 chrX HAVANA gene 1403139 1453762 3506.0 - 0 ENSG00000169093.15 protein_coding ASMTL 2 OTTHUMG00000021057.1 +61921 chrX HAVANA gene 1462572 1537107 4459.0 - 0 ENSG00000182162.10 protein_coding P2RY8 2 OTTHUMG00000021060.2 retrogene +61922 chrX HAVANA gene 1591593 1602514 4075.0 + 0 ENSG00000197976.11 protein_coding AKAP17A 2 OTTHUMG00000021063.3 +61923 chrX HAVANA gene 1615001 1643081 1846.0 + 0 ENSG00000196433.12 protein_coding ASMT 2 OTTHUMG00000021065.2 +61924 chrX HAVANA gene 1732584 1763212 1001.0 + 0 ENSG00000223511.7 lincRNA AL683807.1 2 OTTHUMG00000021062.3 +61925 chrX HAVANA gene 1767347 1768776 548.0 + 0 ENSG00000234622.6 lincRNA AL683807.2 2 OTTHUMG00000021064.1 +61926 chrX HAVANA gene 2334295 2336410 651.0 - 0 ENSG00000223571.6 sense_intronic DHRSX-IT1 2 OTTHUMG00000067406.1 overlapping_locus +61927 chrX HAVANA gene 2486414 2500967 4755.0 - 0 ENSG00000214717.11 protein_coding ZBED1 2 OTTHUMG00000021069.8 overlapping_locus +61928 chrX HAVANA gene 2219516 2502805 3620.0 - 0 ENSG00000169084.13 protein_coding DHRSX 2 OTTHUMG00000021068.4 overlapping_locus +61929 chrX ENSEMBL gene 2609191 2609254 64.0 + 0 ENSG00000277120.5 miRNA MIR6089 3 +61930 chrX HAVANA gene 2612988 2615347 1340.0 - 0 ENSG00000230542.6 lincRNA LINC00102 2 OTTHUMG00000021072.1 +61931 chrX HAVANA gene 2609348 2657229 5921.0 + 0 ENSG00000223773.7 transcribed_unprocessed_pseudogene CD99P1 2 OTTHUMG00000021071.4 +61932 chrX HAVANA gene 2691133 2741309 4912.0 + 0 ENSG00000002586.19 protein_coding CD99 2 OTTHUMG00000021073.11 +61933 chrX HAVANA gene 2752048 2816500 3349.0 + 0 ENSG00000124343.13 protein_coding XG 2 OTTHUMG00000021075.4 +61934 chrX HAVANA gene 2852740 2853760 515.0 - 0 ENSG00000235483.1 antisense GYG2-AS1 2 OTTHUMG00000021074.1 +61935 chrX HAVANA gene 2828788 2882820 3655.0 + 0 ENSG00000056998.19 protein_coding GYG2 2 OTTHUMG00000021079.5 +61936 chrX HAVANA gene 2904904 2906081 816.0 + 0 ENSG00000229851.1 antisense ARSD-AS1 2 OTTHUMG00000021076.1 +61937 chrX HAVANA gene 2903970 2929351 7030.0 - 0 ENSG00000006756.15 protein_coding ARSD 1 OTTHUMG00000021077.3 +61938 chrX HAVANA gene 2934632 2968310 2878.0 - 0 ENSG00000157399.14 protein_coding ARSE 2 OTTHUMG00000137358.2 +61939 chrX HAVANA gene 3006613 3033571 1875.0 + 0 ENSG00000205667.2 protein_coding ARSH 2 OTTHUMG00000159612.1 +61940 chrX ENSEMBL gene 3058220 3058502 283.0 - 0 ENSG00000239228.3 misc_RNA RN7SL578P 3 +61941 chrX HAVANA gene 3041471 3112726 2204.0 + 0 ENSG00000062096.14 protein_coding ARSF 2 OTTHUMG00000021081.1 +61942 chrX HAVANA gene 3112900 3113596 386.0 - 0 ENSG00000230249.1 processed_pseudogene AC112653.1 1 OTTHUMG00000021080.1 pseudo_consens +61943 chrX HAVANA gene 3271820 3284653 674.0 + 0 ENSG00000228459.3 lincRNA LINC01546 2 OTTHUMG00000021082.1 +61944 chrX HAVANA gene 3308565 3346641 9793.0 - 0 ENSG00000101825.7 protein_coding MXRA5 2 OTTHUMG00000021083.2 +61945 chrX HAVANA gene 3367149 3368382 1234.0 + 0 ENSG00000213487.3 processed_pseudogene ASS1P4 1 OTTHUMG00000021084.1 pseudo_consens +61946 chrX ENSEMBL gene 3532117 3532251 135.0 - 0 ENSG00000212214.1 snoRNA SNORA48B 3 +61947 chrX ENSEMBL gene 3572857 3572961 105.0 + 0 ENSG00000207435.1 snRNA RNU6-114P 3 +61948 chrX ENSEMBL gene 3607258 3607365 108.0 - 0 ENSG00000207332.1 snRNA RNU6-146P 3 +61949 chrX ENSEMBL gene 3641443 3641555 113.0 - 0 ENSG00000207320.1 misc_RNA RF00019 3 +61950 chrX HAVANA gene 3659487 3668192 516.0 + 0 ENSG00000236188.1 antisense PRKX-AS1 2 OTTHUMG00000021086.1 +61951 chrX HAVANA gene 3604370 3713608 6452.0 - 0 ENSG00000183943.5 protein_coding PRKX 2 OTTHUMG00000021087.2 ncRNA_host +61952 chrX HAVANA gene 3717149 3717600 452.0 + 0 ENSG00000182888.5 processed_pseudogene AC007685.1 1 OTTHUMG00000021085.2 pseudo_consens +61953 chrX HAVANA gene 3817528 3937855 14235.0 - 0 ENSG00000285756.1 lincRNA BX890604.2 2 OTTHUMG00000067412.7 +61954 chrX HAVANA gene 3953056 3953561 474.0 + 0 ENSG00000225722.1 processed_pseudogene BX890604.1 1 OTTHUMG00000067424.1 pseudo_consens +61955 chrX HAVANA gene 4627200 4633572 1184.0 - 0 ENSG00000236513.1 lincRNA AC074035.1 2 OTTHUMG00000021088.1 +61956 chrX HAVANA gene 5168918 5169439 522.0 - 0 ENSG00000235039.1 processed_pseudogene MTND6P12 2 OTTHUMG00000021089.1 +61957 chrX HAVANA gene 5169512 5170645 1134.0 + 0 ENSG00000226313.1 processed_pseudogene MTCYBP12 1 OTTHUMG00000021090.1 pseudo_consens +61958 chrX HAVANA gene 5305714 5307128 1415.0 - 0 ENSG00000238193.1 processed_pseudogene AC112656.1 1 OTTHUMG00000021091.1 pseudo_consens +61959 chrX ENSEMBL gene 5410122 5410251 130.0 + 0 ENSG00000201660.1 snoRNA RF00401 3 +61960 chrX HAVANA gene 5653421 5726305 976.0 - 0 ENSG00000236120.6 lincRNA AC110995.1 1 OTTHUMG00000021092.1 +61961 chrX ENSEMBL gene 6061644 6061749 106.0 - 0 ENSG00000252291.1 snoRNA RF00322 3 +61962 chrX HAVANA gene 5840637 6228863 7441.0 - 0 ENSG00000146938.15 protein_coding NLGN4X 2 OTTHUMG00000021093.2 ncRNA_host +61963 chrX ENSEMBL gene 6383906 6383963 58.0 - 0 ENSG00000265284.1 miRNA MIR4770 3 +61964 chrX HAVANA gene 6422092 6422701 610.0 - 0 ENSG00000237730.1 processed_pseudogene AC078991.1 1 OTTHUMG00000021094.1 pseudo_consens +61965 chrX HAVANA gene 6533618 6535118 995.0 - 0 ENSG00000169059.12 protein_coding VCX3A 2 OTTHUMG00000021097.1 +61966 chrX HAVANA gene 6667865 6721544 517.0 - 0 ENSG00000231217.1 lincRNA AC097347.1 2 OTTHUMG00000021098.1 +61967 chrX HAVANA gene 6989329 6989783 455.0 + 0 ENSG00000237490.3 processed_pseudogene RPS27AP17 1 OTTHUMG00000021099.1 pseudo_consens +61968 chrX HAVANA gene 7113005 7113404 400.0 - 0 ENSG00000228550.1 processed_pseudogene AC073583.1 2 OTTHUMG00000021100.1 overlapping_locus +61969 chrX ENSEMBL gene 7147860 7147937 78.0 + 0 ENSG00000264268.1 miRNA MIR4767 3 +61970 chrX HAVANA gene 7048920 7148190 3168.0 - 0 ENSG00000130021.13 protein_coding PUDP 1 OTTHUMG00000021101.3 overlapping_locus +61971 chrX HAVANA gene 7219456 7354810 6521.0 + 0 ENSG00000101846.6 protein_coding STS 2 OTTHUMG00000021102.1 +61972 chrX HAVANA gene 7489659 7491199 1541.0 + 0 ENSG00000279682.1 TEC AC120338.1 2 OTTHUMG00000175445.1 +61973 chrX HAVANA gene 7842262 7844143 1055.0 + 0 ENSG00000182583.12 protein_coding VCX 2 OTTHUMG00000028608.1 +61974 chrX HAVANA gene 7896514 7896722 209.0 - 0 ENSG00000274923.1 unprocessed_pseudogene AC005296.1 2 OTTHUMG00000187998.1 +61975 chrX HAVANA gene 7898247 7927739 3441.0 - 0 ENSG00000006757.11 protein_coding PNPLA4 2 OTTHUMG00000021103.2 +61976 chrX HAVANA gene 8007378 8018160 177.0 + 0 ENSG00000230394.1 lincRNA AC078960.1 2 OTTHUMG00000021104.1 +61977 chrX ENSEMBL gene 8126965 8127061 97.0 + 0 ENSG00000207628.3 miRNA MIR651 3 +61978 chrX HAVANA gene 8169944 8171267 815.0 - 0 ENSG00000177504.10 protein_coding VCX2 2 OTTHUMG00000021105.2 +61979 chrX HAVANA gene 8045186 8231386 1293.0 + 0 ENSG00000285679.1 antisense AC097626.1 2 OTTHUMG00000193129.1 ncRNA_host +61980 chrX HAVANA gene 8464830 8466510 1175.0 + 0 ENSG00000205642.9 protein_coding VCX3B 2 OTTHUMG00000021106.1 +61981 chrX HAVANA gene 8528874 8732186 7131.0 - 0 ENSG00000011201.11 protein_coding ANOS1 2 OTTHUMG00000021107.1 +61982 chrX HAVANA gene 8783514 8784461 948.0 - 0 ENSG00000225574.1 processed_pseudogene DRAXINP1 1 OTTHUMG00000021108.2 pseudo_consens +61983 chrX HAVANA gene 8790795 8801383 1590.0 - 0 ENSG00000183304.10 protein_coding FAM9A 2 OTTHUMG00000021110.1 +61984 chrX HAVANA gene 8856665 8857059 395.0 - 0 ENSG00000231619.1 processed_pseudogene AC003685.2 1 OTTHUMG00000021109.1 pseudo_consens +61985 chrX HAVANA gene 8863861 8867601 466.0 - 0 ENSG00000229012.1 lincRNA AC003685.1 1 OTTHUMG00000021111.1 +61986 chrX HAVANA gene 8897642 8927153 909.0 - 0 ENSG00000285896.1 lincRNA AC074281.2 2 OTTHUMG00000193189.1 +61987 chrX HAVANA gene 8980425 8982505 2081.0 - 0 ENSG00000225271.1 processed_pseudogene AC074281.1 1 OTTHUMG00000021112.1 pseudo_consens +61988 chrX ENSEMBL gene 9133828 9133946 119.0 + 0 ENSG00000200852.1 rRNA_pseudogene RNA5SP499 3 +61989 chrX HAVANA gene 9024232 9164639 6843.0 - 0 ENSG00000177138.15 protein_coding FAM9B 2 OTTHUMG00000021114.3 +61990 chrX HAVANA gene 9179385 9179606 222.0 + 0 ENSG00000219870.2 processed_pseudogene AC119618.1 1 OTTHUMG00000021113.1 pseudo_consens +61991 chrX HAVANA gene 9249920 9275206 1715.0 + 0 ENSG00000228543.1 lincRNA AC003684.1 2 OTTHUMG00000021115.1 +61992 chrX HAVANA gene 9402751 9404802 1600.0 + 0 ENSG00000232111.2 processed_pseudogene AC073488.1 1 OTTHUMG00000021116.2 pseudo_consens +61993 chrX HAVANA gene 9404954 9405731 778.0 + 0 ENSG00000282306.1 processed_pseudogene AC073488.7 1 OTTHUMG00000191440.1 pseudo_consens +61994 chrX HAVANA gene 9406025 9406778 754.0 + 0 ENSG00000282501.1 processed_pseudogene AC073488.9 1 OTTHUMG00000191441.1 pseudo_consens +61995 chrX HAVANA gene 9406952 9407708 757.0 + 0 ENSG00000282358.1 processed_pseudogene AC073488.8 1 OTTHUMG00000191442.1 pseudo_consens +61996 chrX HAVANA gene 9407861 9408638 778.0 + 0 ENSG00000282668.1 processed_pseudogene AC073488.10 1 OTTHUMG00000191443.1 pseudo_consens +61997 chrX HAVANA gene 9408818 9409571 754.0 + 0 ENSG00000282299.1 processed_pseudogene AC073488.5 1 OTTHUMG00000191444.1 pseudo_consens +61998 chrX HAVANA gene 9409748 9410501 754.0 + 0 ENSG00000282697.1 processed_pseudogene AC073488.11 1 OTTHUMG00000191445.1 pseudo_consens +61999 chrX HAVANA gene 9410789 9411545 757.0 + 0 ENSG00000282222.1 processed_pseudogene AC073488.4 1 OTTHUMG00000191446.1 pseudo_consens +62000 chrX HAVANA gene 9411701 9412478 778.0 + 0 ENSG00000281955.1 processed_pseudogene AC073488.3 1 OTTHUMG00000191447.1 pseudo_consens +62001 chrX HAVANA gene 9412772 9413522 751.0 + 0 ENSG00000281941.1 processed_pseudogene AC073488.2 1 OTTHUMG00000191448.1 pseudo_consens +62002 chrX HAVANA gene 9413816 9414569 754.0 + 0 ENSG00000282300.1 processed_pseudogene AC073488.6 1 OTTHUMG00000191449.1 pseudo_consens +62003 chrX HAVANA gene 9463295 9741037 9092.0 + 0 ENSG00000101849.16 protein_coding TBL1X 2 OTTHUMG00000021117.7 +62004 chrX HAVANA gene 9725346 9786297 2486.0 - 0 ENSG00000101850.12 protein_coding GPR143 2 OTTHUMG00000021118.4 +62005 chrX HAVANA gene 9818239 9819469 1231.0 - 0 ENSG00000215319.2 processed_pseudogene EIF5P1 1 OTTHUMG00000021119.1 pseudo_consens +62006 chrX HAVANA gene 9865093 9865543 451.0 - 0 ENSG00000230326.1 processed_pseudogene HMGN1P33 2 OTTHUMG00000021120.1 +62007 chrX ENSEMBL gene 9874601 9874701 101.0 - 0 ENSG00000206844.1 misc_RNA RF00019 3 +62008 chrX HAVANA gene 9786456 9949443 8191.0 + 0 ENSG00000146950.12 protein_coding SHROOM2 2 OTTHUMG00000021121.2 +62009 chrX HAVANA gene 9967358 9968352 995.0 + 0 ENSG00000234469.4 protein_coding CLDN34 2 OTTHUMG00000189259.1 +62010 chrX HAVANA gene 10024842 10038654 578.0 - 0 ENSG00000225076.1 antisense WWC3-AS1 1 OTTHUMG00000021122.1 +62011 chrX ENSEMBL gene 10061222 10061323 102.0 + 0 ENSG00000202469.1 misc_RNA RF00019 3 +62012 chrX HAVANA gene 10015562 10144478 7114.0 + 0 ENSG00000047644.18 protein_coding WWC3 2 OTTHUMG00000021123.1 ncRNA_host +62013 chrX HAVANA gene 10156945 10237660 6789.0 + 0 ENSG00000073464.11 protein_coding CLCN4 2 OTTHUMG00000021125.2 +62014 chrX HAVANA gene 10242339 10365323 611.0 + 0 ENSG00000227042.1 lincRNA AC003666.1 2 OTTHUMG00000021126.1 +62015 chrX ENSEMBL gene 10582817 10582919 103.0 + 0 ENSG00000207202.1 snRNA RNU6-800P 3 +62016 chrX HAVANA gene 10445310 10833654 9295.0 - 0 ENSG00000101871.14 protein_coding MID1 2 OTTHUMG00000021127.4 +62017 chrX HAVANA gene 10847877 11111141 3080.0 - 0 ENSG00000234129.7 lincRNA AC073529.1 2 OTTHUMG00000021129.3 +62018 chrX ENSEMBL gene 11116092 11116193 102.0 - 0 ENSG00000207151.1 misc_RNA RF00019 3 +62019 chrX HAVANA gene 11111301 11123078 2335.0 + 0 ENSG00000004961.14 protein_coding HCCS 2 OTTHUMG00000021128.1 +62020 chrX ENSEMBL gene 11148584 11148769 186.0 - 0 ENSG00000278218.1 misc_RNA RF02271 3 +62021 chrX HAVANA gene 11221348 11225731 330.0 + 0 ENSG00000275194.1 unprocessed_pseudogene AC004467.1 2 OTTHUMG00000188001.1 +62022 chrX HAVANA gene 11293413 11300761 835.0 + 0 ENSG00000125363.14 protein_coding AMELX 2 OTTHUMG00000021130.1 +62023 chrX ENSEMBL gene 11318614 11318686 73.0 - 0 ENSG00000263652.1 miRNA MIR548AX 3 +62024 chrX HAVANA gene 11334233 11335901 1190.0 - 0 ENSG00000232392.1 processed_pseudogene AC002366.1 1 OTTHUMG00000021131.1 pseudo_consens,overlapping_locus +62025 chrX HAVANA gene 11137543 11665701 7885.0 - 0 ENSG00000047648.21 protein_coding ARHGAP6 2 OTTHUMG00000021134.5 ncRNA_host,overlapping_locus +62026 chrX HAVANA gene 11704123 11705590 1468.0 - 0 ENSG00000223418.1 processed_pseudogene AC004554.1 1 OTTHUMG00000021133.1 pseudo_consens +62027 chrX HAVANA gene 11668401 11757718 1893.0 - 0 ENSG00000282840.1 lincRNA AC004554.2 2 OTTHUMG00000191601.1 +62028 chrX HAVANA gene 11758159 11775772 9780.0 + 0 ENSG00000005302.18 protein_coding MSL3 2 OTTHUMG00000021132.12 +62029 chrX ENSEMBL gene 12054824 12054926 103.0 - 0 ENSG00000206792.1 misc_RNA RF00019 3 +62030 chrX ENSEMBL gene 12149126 12149238 113.0 + 0 ENSG00000206795.1 misc_RNA RF00019 3 +62031 chrX HAVANA gene 12373167 12375133 285.0 - 0 ENSG00000223487.1 antisense FRMPD4-AS1 1 OTTHUMG00000021135.1 +62032 chrX HAVANA gene 12395757 12396167 411.0 - 0 ENSG00000231211.2 processed_pseudogene RPL17P49 1 OTTHUMG00000021136.1 pseudo_consens +62033 chrX HAVANA gene 12583415 12583526 112.0 - 0 ENSG00000273800.1 unprocessed_pseudogene AC119619.1 2 OTTHUMG00000188002.1 +62034 chrX ENSEMBL gene 12614003 12614197 195.0 - 0 ENSG00000271814.1 misc_RNA RN7SKP290 3 +62035 chrX HAVANA gene 12138466 12724523 8478.0 + 0 ENSG00000169933.13 protein_coding FRMPD4 2 OTTHUMG00000021138.2 ncRNA_host +62036 chrX HAVANA gene 12791355 12824222 2758.0 + 0 ENSG00000101911.12 protein_coding PRPS2 1 OTTHUMG00000021139.3 +62037 chrX HAVANA gene 12825840 12826833 686.0 + 0 ENSG00000229083.1 processed_pseudogene PSMA6P2 1 OTTHUMG00000021140.1 pseudo_consens +62038 chrX HAVANA gene 12844865 12845430 566.0 - 0 ENSG00000230691.1 processed_pseudogene MRPL35P4 1 OTTHUMG00000021141.1 pseudo_consens +62039 chrX HAVANA gene 12867083 12890380 5209.0 + 0 ENSG00000196664.4 protein_coding TLR7 2 OTTHUMG00000021137.1 +62040 chrX HAVANA gene 12902817 12908333 1349.0 - 0 ENSG00000233338.1 antisense TLR8-AS1 2 OTTHUMG00000021142.1 +62041 chrX HAVANA gene 12906620 12923169 4353.0 + 0 ENSG00000101916.11 protein_coding TLR8 1 OTTHUMG00000021145.3 +62042 chrX HAVANA gene 12975108 12977227 1705.0 + 0 ENSG00000205542.10 protein_coding TMSB4X 1 OTTHUMG00000021144.3 +62043 chrX HAVANA gene 13035618 13044682 5858.0 - 0 ENSG00000187268.11 protein_coding FAM9C 2 OTTHUMG00000021143.3 +62044 chrX HAVANA gene 13093660 13094573 914.0 + 0 ENSG00000261030.1 lincRNA AC079171.1 2 OTTHUMG00000175492.1 +62045 chrX HAVANA gene 13266048 13303452 1557.0 - 0 ENSG00000235385.1 lincRNA LINC02154 2 OTTHUMG00000021149.2 +62046 chrX HAVANA gene 13310652 13319933 2249.0 + 0 ENSG00000231216.1 antisense GS1-600G8.3 2 OTTHUMG00000021147.1 +62047 chrX HAVANA gene 13318236 13320399 2164.0 - 0 ENSG00000123594.5 protein_coding ATXN3L 2 OTTHUMG00000021146.3 retrogene +62048 chrX HAVANA gene 13327937 13329867 739.0 + 0 ENSG00000235592.1 unprocessed_pseudogene AC004674.1 2 OTTHUMG00000021148.1 +62049 chrX HAVANA gene 13378735 13379340 606.0 - 0 ENSG00000197582.5 processed_pseudogene GPX1P1 1 OTTHUMG00000021150.1 pseudo_consens +62050 chrX HAVANA gene 13334776 13403019 2073.0 + 0 ENSG00000226985.6 lincRNA LINC01203 2 OTTHUMG00000021151.3 +62051 chrX HAVANA gene 13574746 13575066 321.0 + 0 ENSG00000233357.2 processed_pseudogene RPL30P15 1 OTTHUMG00000021153.2 pseudo_consens,overlapping_locus +62052 chrX ENSEMBL gene 13590292 13590346 55.0 + 0 ENSG00000283493.1 miRNA MIR6086 3 +62053 chrX ENSEMBL gene 13596236 13596548 313.0 + 0 ENSG00000199622.1 misc_RNA RN7SKP20 3 +62054 chrX HAVANA gene 13569605 13633575 2607.0 + 0 ENSG00000198759.11 protein_coding EGFL6 2 OTTHUMG00000021155.1 ncRNA_host,overlapping_locus +62055 chrX HAVANA gene 13653189 13681964 5231.0 + 0 ENSG00000176896.8 protein_coding TCEANC 2 OTTHUMG00000021154.3 +62056 chrX HAVANA gene 13689125 13710506 2118.0 + 0 ENSG00000123595.7 protein_coding RAB9A 2 OTTHUMG00000021156.2 retrogene +62057 chrX HAVANA gene 13712244 13734635 6107.0 - 0 ENSG00000196459.13 protein_coding TRAPPC2 1 OTTHUMG00000021157.6 +62058 chrX HAVANA gene 13734745 13769353 5172.0 + 0 ENSG00000046651.14 protein_coding OFD1 2 OTTHUMG00000021159.1 +62059 chrX HAVANA gene 13771031 13938638 5675.0 - 0 ENSG00000046653.14 protein_coding GPM6B 2 OTTHUMG00000021162.4 +62060 chrX HAVANA gene 13955393 13963904 696.0 + 0 ENSG00000233535.1 lincRNA AC003035.2 2 OTTHUMG00000021161.1 +62061 chrX HAVANA gene 13980066 13988820 544.0 - 0 ENSG00000212663.2 lincRNA AC003035.1 2 OTTHUMG00000021163.1 +62062 chrX HAVANA gene 14008279 14029893 2424.0 - 0 ENSG00000046647.13 protein_coding GEMIN8 2 OTTHUMG00000021160.2 +62063 chrX HAVANA gene 14244382 14244928 547.0 + 0 ENSG00000233247.3 processed_pseudogene AC002524.1 2 OTTHUMG00000021164.1 +62064 chrX HAVANA gene 14529298 14731812 3713.0 + 0 ENSG00000101958.13 protein_coding GLRA2 2 OTTHUMG00000021166.3 +62065 chrX HAVANA gene 14834476 14835319 844.0 - 0 ENSG00000231066.3 processed_pseudogene NPM1P9 1 OTTHUMG00000021167.3 pseudo_consens +62066 chrX HAVANA gene 14835961 14873069 3593.0 - 0 ENSG00000181544.14 protein_coding FANCB 2 OTTHUMG00000021168.5 +62067 chrX HAVANA gene 14873441 14922327 5656.0 + 0 ENSG00000130150.11 protein_coding MOSPD2 2 OTTHUMG00000021170.2 +62068 chrX HAVANA gene 14977959 14978463 505.0 - 0 ENSG00000235929.1 processed_pseudogene TPT1P14 1 OTTHUMG00000021169.1 pseudo_consens +62069 chrX HAVANA gene 15117437 15117768 332.0 - 0 ENSG00000236929.2 processed_pseudogene AC112498.1 1 OTTHUMG00000021171.2 pseudo_consens +62070 chrX HAVANA gene 15235288 15270467 2363.0 - 0 ENSG00000102048.15 protein_coding ASB9 2 OTTHUMG00000021172.3 +62071 chrX HAVANA gene 15281697 15315656 3140.0 - 0 ENSG00000165192.13 protein_coding ASB11 2 OTTHUMG00000021173.3 +62072 chrX HAVANA gene 15319451 15335580 6321.0 - 0 ENSG00000165195.15 protein_coding PIGA 2 OTTHUMG00000021174.7 +62073 chrX HAVANA gene 15345591 15384376 2153.0 - 0 ENSG00000165197.4 protein_coding VEGFD 2 OTTHUMG00000021175.1 +62074 chrX HAVANA gene 15384799 15493564 2512.0 - 0 ENSG00000087842.10 protein_coding PIR 2 OTTHUMG00000021176.1 +62075 chrX HAVANA gene 15464246 15556529 2806.0 + 0 ENSG00000102010.14 protein_coding BMX 2 OTTHUMG00000021180.1 +62076 chrX HAVANA gene 15561033 15602148 3926.0 - 0 ENSG00000130234.10 protein_coding ACE2 2 OTTHUMG00000193402.1 overlapping_locus +62077 chrX HAVANA gene 15602881 15621484 574.0 + 0 ENSG00000225833.1 antisense GS1-594A7.3 2 OTTHUMG00000021178.1 +62078 chrX HAVANA gene 15646167 15646875 611.0 - 0 ENSG00000237539.1 processed_pseudogene AC003669.1 2 OTTHUMG00000021179.1 overlapping_locus +62079 chrX HAVANA gene 15627318 15675012 2009.0 - 0 ENSG00000147003.6 protein_coding CLTRN 2 OTTHUMG00000021181.3 overlapping_locus +62080 chrX HAVANA gene 15561047 15675608 3666.0 - 0 ENSG00000285602.1 protein_coding AC097625.1 2 OTTHUMG00000021177.3 overlapping_locus +62081 chrX ENSEMBL gene 15702602 15703243 639.0 - 0 ENSG00000279413.1 pseudogene AC112497.1 3 +62082 chrX HAVANA gene 15674932 15703724 2409.0 + 0 ENSG00000186312.10 transcribed_unprocessed_pseudogene CA5BP1 2 OTTHUMG00000021182.4 overlapping_locus +62083 chrX ENSEMBL gene 15716208 15716346 139.0 + 0 ENSG00000200620.1 snoRNA RF00409 3 +62084 chrX HAVANA gene 15785716 15787589 1874.0 - 0 ENSG00000281371.1 antisense INE2 2 OTTHUMG00000189580.1 +62085 chrX HAVANA gene 15688830 15788409 8520.0 + 0 ENSG00000169239.12 protein_coding CA5B 2 OTTHUMG00000021183.5 ncRNA_host,overlapping_locus +62086 chrX HAVANA gene 15790472 15823260 2077.0 + 0 ENSG00000169249.12 protein_coding ZRSR2 2 OTTHUMG00000021184.2 +62087 chrX HAVANA gene 15825806 15854931 5371.0 - 0 ENSG00000182287.14 protein_coding AP1S2 2 OTTHUMG00000021186.2 +62088 chrX ENSEMBL gene 15916189 15916303 115.0 - 0 ENSG00000200566.1 snRNA RNU5F-7P 3 +62089 chrX HAVANA gene 15917548 15918631 337.0 + 0 ENSG00000226536.1 processed_pseudogene SETP15 1 OTTHUMG00000021185.1 pseudo_consens +62090 chrX HAVANA gene 16123556 16153021 1929.0 + 0 ENSG00000126010.5 protein_coding GRPR 2 OTTHUMG00000021189.1 +62091 chrX HAVANA gene 16152941 16170869 1219.0 - 0 ENSG00000238178.6 antisense AC078993.1 2 OTTHUMG00000021187.3 +62092 chrX HAVANA gene 16167481 16171464 1611.0 + 0 ENSG00000182798.10 protein_coding MAGEB17 2 OTTHUMG00000021188.6 retrogene +62093 chrX HAVANA gene 16198428 16199289 862.0 - 0 ENSG00000215313.3 processed_pseudogene RPL6P30 1 OTTHUMG00000021190.1 pseudo_consens +62094 chrX HAVANA gene 16474342 16475340 999.0 - 0 ENSG00000235071.1 processed_pseudogene AC073909.1 1 OTTHUMG00000021191.1 pseudo_consens +62095 chrX ENSEMBL gene 16539137 16539439 303.0 - 0 ENSG00000239333.3 misc_RNA RN7SL658P 3 +62096 chrX ENSEMBL gene 16627012 16627085 74.0 - 0 ENSG00000265144.1 miRNA MIR548AM 3 +62097 chrX HAVANA gene 16650158 16654670 455.0 + 0 ENSG00000169906.5 protein_coding S100G 2 OTTHUMG00000021194.1 +62098 chrX HAVANA gene 16588003 16712936 5510.0 - 0 ENSG00000047230.14 protein_coding CTPS2 2 OTTHUMG00000021193.1 ncRNA_host +62099 chrX HAVANA gene 16719632 16765336 6418.0 + 0 ENSG00000169895.5 protein_coding SYAP1 2 OTTHUMG00000021192.1 +62100 chrX ENSEMBL gene 16767844 16767905 62.0 + 0 ENSG00000238709.1 snRNA RNU7-56P 3 +62101 chrX HAVANA gene 16803233 16803353 121.0 + 0 ENSG00000230180.1 processed_pseudogene RPL12P49 1 OTTHUMG00000021195.1 pseudo_consens,overlapping_locus +62102 chrX HAVANA gene 16786427 16844519 4460.0 + 0 ENSG00000086712.12 protein_coding TXLNG 2 OTTHUMG00000021196.1 overlapping_locus +62103 chrX HAVANA gene 16839283 16870414 7392.0 - 0 ENSG00000102054.17 protein_coding RBBP7 1 OTTHUMG00000021198.5 +62104 chrX ENSEMBL gene 16875146 16875267 122.0 - 0 ENSG00000222736.1 snRNA RNU4-6P 3 +62105 chrX HAVANA gene 16897651 16898521 871.0 - 0 ENSG00000223498.1 processed_pseudogene AL929302.1 1 OTTHUMG00000021197.1 pseudo_consens +62106 chrX ENSEMBL gene 16912215 16912317 103.0 - 0 ENSG00000199410.1 misc_RNA RF00019 3 +62107 chrX ENSEMBL gene 17044380 17044511 132.0 - 0 ENSG00000201467.1 snoRNA RF00190 3 +62108 chrX HAVANA gene 17099782 17100239 458.0 - 0 ENSG00000214322.3 processed_pseudogene CBX1P2 1 OTTHUMG00000021200.1 pseudo_consens +62109 chrX HAVANA gene 16946691 17153280 11311.0 + 0 ENSG00000169891.17 protein_coding REPS2 2 OTTHUMG00000021199.3 +62110 chrX HAVANA gene 17282637 17283093 457.0 + 0 ENSG00000214321.3 processed_pseudogene CBX1P4 1 OTTHUMG00000021201.1 pseudo_consens +62111 chrX ENSEMBL gene 17357930 17358033 104.0 + 0 ENSG00000238764.1 snoRNA RF01210 3 +62112 chrX ENSEMBL gene 17425881 17425954 74.0 + 0 ENSG00000265465.1 miRNA MIR4768 3 +62113 chrX HAVANA gene 17552349 17557387 366.0 - 0 ENSG00000230020.1 antisense NHS-AS1 1 OTTHUMG00000021203.1 +62114 chrX HAVANA gene 17528435 17587160 1554.0 + 0 ENSG00000235834.1 sense_intronic Z93022.1 2 OTTHUMG00000021202.1 overlapping_locus +62115 chrX HAVANA gene 17705339 17705691 353.0 - 0 ENSG00000226153.1 processed_pseudogene Z93242.1 1 OTTHUMG00000021204.1 pseudo_consens +62116 chrX HAVANA gene 17375420 17735994 10168.0 + 0 ENSG00000188158.15 protein_coding NHS 2 OTTHUMG00000022799.5 ncRNA_host,overlapping_locus +62117 chrX HAVANA gene 17737449 17754988 5497.0 + 0 ENSG00000047634.14 protein_coding SCML1 2 OTTHUMG00000021206.7 +62118 chrX HAVANA gene 17769005 17769398 394.0 - 0 ENSG00000227873.1 processed_pseudogene Z93242.2 1 OTTHUMG00000024017.1 pseudo_consens +62119 chrX HAVANA gene 17800049 17861337 2622.0 - 0 ENSG00000131831.17 protein_coding RAI2 2 OTTHUMG00000021209.4 +62120 chrX HAVANA gene 17897711 17900333 2623.0 - 0 ENSG00000276467.1 unprocessed_pseudogene Z93929.2 2 OTTHUMG00000188004.1 +62121 chrX HAVANA gene 17933349 17934823 1475.0 + 0 ENSG00000225066.1 processed_pseudogene Z93929.1 1 OTTHUMG00000021208.1 pseudo_consens +62122 chrX HAVANA gene 17970197 18104644 708.0 - 0 ENSG00000225882.1 lincRNA LINC01456 2 OTTHUMG00000021210.1 +62123 chrX HAVANA gene 18162931 18220883 4637.0 - 0 ENSG00000177324.13 protein_coding BEND2 2 OTTHUMG00000021211.2 +62124 chrX HAVANA gene 18341216 18341346 131.0 + 0 ENSG00000235211.4 processed_pseudogene TMSB10P2 1 OTTHUMG00000021213.2 pseudo_consens +62125 chrX HAVANA gene 18239314 18354727 4203.0 - 0 ENSG00000102098.17 protein_coding SCML2 2 OTTHUMG00000021212.2 +62126 chrX ENSEMBL gene 18395994 18396095 102.0 - 0 ENSG00000207025.1 misc_RNA RF00019 3 +62127 chrX HAVANA gene 18535079 18536120 1042.0 + 0 ENSG00000236187.1 processed_pseudogene GJA6P 1 OTTHUMG00000021215.1 pseudo_consens,overlapping_locus +62128 chrX HAVANA gene 18425583 18653629 17075.0 + 0 ENSG00000008086.11 protein_coding CDKL5 2 OTTHUMG00000021214.9 overlapping_locus +62129 chrX HAVANA gene 18639910 18672109 3485.0 - 0 ENSG00000102104.8 protein_coding RS1 2 OTTHUMG00000021216.1 +62130 chrX HAVANA gene 18688643 18691604 430.0 - 0 ENSG00000237221.1 antisense PPEF1-AS1 2 OTTHUMG00000021217.1 +62131 chrX HAVANA gene 18675909 18827921 3513.0 + 0 ENSG00000086717.18 protein_coding PPEF1 2 OTTHUMG00000021219.9 +62132 chrX HAVANA gene 18838709 18839452 744.0 - 0 ENSG00000196564.4 processed_pseudogene AL096700.1 1 OTTHUMG00000021218.1 pseudo_consens +62133 chrX HAVANA gene 18865771 18866554 784.0 + 0 ENSG00000224224.1 processed_pseudogene HAUS1P2 1 OTTHUMG00000021221.1 pseudo_consens +62134 chrX HAVANA gene 18890296 18894497 930.0 + 0 ENSG00000237836.5 antisense PHKA2-AS1 2 OTTHUMG00000021220.1 +62135 chrX ENSEMBL gene 18915243 18915535 293.0 - 0 ENSG00000266710.2 misc_RNA RN7SL48P 3 +62136 chrX HAVANA gene 18892300 18984598 9029.0 - 0 ENSG00000044446.11 protein_coding PHKA2 2 OTTHUMG00000021222.2 ncRNA_host +62137 chrX HAVANA gene 18989309 19122637 10155.0 - 0 ENSG00000173698.17 protein_coding ADGRG2 2 OTTHUMG00000021223.2 +62138 chrX HAVANA gene 19343893 19361705 4493.0 + 0 ENSG00000131828.13 protein_coding PDHA1 2 OTTHUMG00000021224.3 +62139 chrX ENSEMBL gene 19376774 19376875 102.0 + 0 ENSG00000202144.1 misc_RNA RF00019 3 +62140 chrX HAVANA gene 19496378 19497721 1035.0 - 0 ENSG00000275800.1 unprocessed_pseudogene EIF5P2 1 OTTHUMG00000188005.1 pseudo_consens +62141 chrX HAVANA gene 19360056 19515261 5573.0 - 0 ENSG00000180815.14 protein_coding MAP3K15 2 OTTHUMG00000022724.5 +62142 chrX HAVANA gene 19533975 19887601 5780.0 - 0 ENSG00000147010.17 protein_coding SH3KBP1 2 OTTHUMG00000021227.2 +62143 chrX HAVANA gene 19912860 19970298 8630.0 - 0 ENSG00000173681.16 protein_coding BCLAF3 2 OTTHUMG00000021226.5 +62144 chrX ENSEMBL gene 19985058 19985159 102.0 - 0 ENSG00000206663.1 misc_RNA RF00019 3 +62145 chrX ENSEMBL gene 20017088 20017187 100.0 - 0 ENSG00000264566.3 miRNA MIR23C 3 +62146 chrX HAVANA gene 20006713 20116917 4376.0 - 0 ENSG00000184368.15 protein_coding MAP7D2 2 OTTHUMG00000021228.3 ncRNA_host +62147 chrX ENSEMBL gene 20136066 20136135 70.0 - 0 ENSG00000201882.1 snoRNA RF00493 3 +62148 chrX ENSEMBL gene 20136306 20136385 80.0 - 0 ENSG00000201592.1 snoRNA RF00494 3 +62149 chrX HAVANA gene 20139968 20140444 378.0 + 0 ENSG00000225037.1 antisense EIF1AX-AS1 2 OTTHUMG00000021229.1 +62150 chrX HAVANA gene 20124518 20141844 4427.0 - 0 ENSG00000173674.10 protein_coding EIF1AX 2 OTTHUMG00000022704.1 ncRNA_host +62151 chrX HAVANA gene 20149911 20267519 9925.0 - 0 ENSG00000177189.13 protein_coding RPS6KA3 2 OTTHUMG00000021231.11 +62152 chrX HAVANA gene 20311838 20317783 632.0 - 0 ENSG00000283631.1 lincRNA AL928596.1 2 OTTHUMG00000191666.1 +62153 chrX ENSEMBL gene 20452108 20452431 324.0 + 0 ENSG00000252978.1 misc_RNA RN7SKP183 3 +62154 chrX HAVANA gene 20443326 20492349 567.0 + 0 ENSG00000283400.1 lincRNA AL807740.1 2 OTTHUMG00000191667.1 ncRNA_host +62155 chrX HAVANA gene 21131496 21163726 708.0 + 0 ENSG00000283546.1 lincRNA BX088723.1 2 OTTHUMG00000191669.1 +62156 chrX ENSEMBL gene 21214637 21214743 107.0 + 0 ENSG00000206716.1 snRNA RNU6-133P 3 +62157 chrX HAVANA gene 20769718 21374265 6221.0 - 0 ENSG00000283380.1 processed_transcript AL807742.1 2 OTTHUMG00000191668.1 +62158 chrX HAVANA gene 21421822 21422294 473.0 - 0 ENSG00000231913.1 processed_pseudogene RARRES2P3 1 OTTHUMG00000021232.1 pseudo_consens +62159 chrX HAVANA gene 21372801 21654695 31865.0 + 0 ENSG00000149970.15 protein_coding CNKSR2 2 OTTHUMG00000021233.7 +62160 chrX HAVANA gene 21654690 21658330 3641.0 - 0 ENSG00000185915.5 protein_coding KLHL34 2 OTTHUMG00000021234.1 +62161 chrX HAVANA gene 21705972 21758163 1040.0 - 0 ENSG00000091482.6 protein_coding SMPX 2 OTTHUMG00000021235.4 +62162 chrX HAVANA gene 21841794 21841961 168.0 - 0 ENSG00000275681.1 unprocessed_pseudogene U73479.1 2 OTTHUMG00000188006.1 +62163 chrX HAVANA gene 21855987 21858727 2741.0 + 0 ENSG00000230797.2 protein_coding YY2 2 OTTHUMG00000021236.1 overlapping_locus +62164 chrX ENSEMBL gene 21872707 21872808 102.0 + 0 ENSG00000206639.1 misc_RNA RF00019 3 +62165 chrX HAVANA gene 21839636 21885424 8927.0 + 0 ENSG00000012174.11 protein_coding MBTPS2 2 OTTHUMG00000021237.1 ncRNA_host,overlapping_locus +62166 chrX HAVANA gene 21939461 21940160 700.0 + 0 ENSG00000271286.1 processed_pseudogene U73023.1 1 OTTHUMG00000184989.1 pseudo_consens +62167 chrX HAVANA gene 21940573 21994835 2160.0 + 0 ENSG00000102172.15 protein_coding SMS 2 OTTHUMG00000021239.3 +62168 chrX HAVANA gene 22162733 22172983 1906.0 - 0 ENSG00000224204.1 antisense PHEX-AS1 2 OTTHUMG00000021240.1 +62169 chrX HAVANA gene 22032441 22251310 6384.0 + 0 ENSG00000102174.8 protein_coding PHEX 2 OTTHUMG00000021241.2 +62170 chrX HAVANA gene 22272943 22274461 1519.0 + 0 ENSG00000175809.5 protein_coding CBLL2 2 OTTHUMG00000021242.2 retrogene +62171 chrX HAVANA gene 22435598 22436818 1221.0 + 0 ENSG00000224396.1 processed_pseudogene METTL15P3 1 OTTHUMG00000021243.1 pseudo_consens,overlapping_locus +62172 chrX HAVANA gene 22428132 22494713 389.0 + 0 ENSG00000231846.1 lincRNA AC092832.2 2 OTTHUMG00000021244.1 overlapping_locus +62173 chrX ENSEMBL gene 22527835 22527941 107.0 + 0 ENSG00000201095.1 snRNA RNU6-266P 3 +62174 chrX HAVANA gene 22616744 22617143 400.0 - 0 ENSG00000231011.1 processed_pseudogene AC092832.1 1 OTTHUMG00000021245.1 pseudo_consens,overlapping_locus +62175 chrX HAVANA gene 22698457 22768966 382.0 + 0 ENSG00000237019.1 lincRNA AC004470.1 2 OTTHUMG00000021246.1 +62176 chrX HAVANA gene 22999961 23003589 3629.0 + 0 ENSG00000184735.6 protein_coding DDX53 2 OTTHUMG00000021248.1 retrogene +62177 chrX HAVANA gene 23075758 23076767 681.0 + 0 ENSG00000174028.6 processed_pseudogene FAM3C2 2 OTTHUMG00000021247.1 +62178 chrX HAVANA gene 23198339 23198690 352.0 + 0 ENSG00000228610.1 processed_pseudogene PDCL2P1 1 OTTHUMG00000021250.1 pseudo_consens +62179 chrX HAVANA gene 22259797 23293146 1135.0 - 0 ENSG00000233067.2 lincRNA PTCHD1-AS 2 OTTHUMG00000021249.2 overlapping_locus +62180 chrX HAVANA gene 23351013 23351450 438.0 + 0 ENSG00000226774.1 processed_pseudogene AC073910.1 1 OTTHUMG00000021252.1 pseudo_consens,overlapping_locus +62181 chrX HAVANA gene 23334016 23404372 13714.0 + 0 ENSG00000165186.11 protein_coding PTCHD1 2 OTTHUMG00000021251.2 overlapping_locus +62182 chrX HAVANA gene 23664262 23686399 1904.0 + 0 ENSG00000123131.12 protein_coding PRDX4 2 OTTHUMG00000021253.4 +62183 chrX HAVANA gene 23702253 23766475 5046.0 - 0 ENSG00000123130.16 protein_coding ACOT9 2 OTTHUMG00000021257.5 +62184 chrX ENSEMBL gene 23782210 23782310 101.0 + 0 ENSG00000202272.1 misc_RNA RF00019 3 +62185 chrX HAVANA gene 23772992 23782956 672.0 - 0 ENSG00000233785.1 antisense AC131011.1 2 OTTHUMG00000021255.1 +62186 chrX HAVANA gene 23783173 23786226 2498.0 + 0 ENSG00000130066.16 protein_coding SAT1 2 OTTHUMG00000021256.1 +62187 chrX HAVANA gene 23836742 23837321 580.0 - 0 ENSG00000238103.4 processed_pseudogene RPL9P7 2 OTTHUMG00000021254.3 overlapping_locus +62188 chrX HAVANA gene 23833353 23907934 2353.0 - 0 ENSG00000184831.13 protein_coding APOO 2 OTTHUMG00000021259.5 overlapping_locus +62189 chrX HAVANA gene 23907801 23939509 2050.0 + 0 ENSG00000165182.11 protein_coding CXorf58 2 OTTHUMG00000021258.3 +62190 chrX HAVANA gene 23983720 24027186 6272.0 - 0 ENSG00000174010.9 protein_coding KLHL15 2 OTTHUMG00000021261.1 +62191 chrX HAVANA gene 24054716 24077971 3472.0 + 0 ENSG00000130741.10 protein_coding EIF2S3 2 OTTHUMG00000021262.2 +62192 chrX ENSEMBL gene 24133186 24133317 132.0 + 0 ENSG00000201407.1 snoRNA RF00263 3 +62193 chrX HAVANA gene 24146225 24149654 417.0 - 0 ENSG00000234230.1 antisense ZFX-AS1 2 OTTHUMG00000021263.1 +62194 chrX HAVANA gene 24149173 24216255 9037.0 + 0 ENSG00000005889.15 protein_coding ZFX 2 OTTHUMG00000021264.2 +62195 chrX HAVANA gene 24310907 24313315 2409.0 - 0 ENSG00000223611.5 processed_pseudogene SUPT20HL2 1 OTTHUMG00000021265.1 pseudo_consens +62196 chrX HAVANA gene 24362761 24365378 2618.0 + 0 ENSG00000223731.2 processed_pseudogene SUPT20HL1 1 OTTHUMG00000021267.1 pseudo_consens +62197 chrX HAVANA gene 24429573 24429920 348.0 - 0 ENSG00000225071.1 processed_pseudogene AC004552.1 2 OTTHUMG00000021266.1 +62198 chrX HAVANA gene 24513450 24513687 238.0 + 0 ENSG00000214124.3 processed_pseudogene SNRPEP9 1 OTTHUMG00000021268.1 pseudo_consens,overlapping_locus +62199 chrX HAVANA gene 24465221 24541862 4951.0 + 0 ENSG00000067992.13 protein_coding PDK3 2 OTTHUMG00000021269.4 overlapping_locus +62200 chrX HAVANA gene 24545516 24550466 4951.0 + 0 ENSG00000260822.1 sense_overlapping AC004656.1 2 OTTHUMG00000175571.1 +62201 chrX HAVANA gene 24632257 24632601 345.0 + 0 ENSG00000226222.3 processed_pseudogene AC079168.1 2 OTTHUMG00000021272.3 +62202 chrX HAVANA gene 24650073 24658237 275.0 + 0 ENSG00000236836.1 antisense PCYT1B-AS1 2 OTTHUMG00000021273.1 +62203 chrX HAVANA gene 24558087 24672677 5555.0 - 0 ENSG00000102230.13 protein_coding PCYT1B 2 OTTHUMG00000021270.5 +62204 chrX HAVANA gene 24681909 24682634 416.0 + 0 ENSG00000236487.2 processed_pseudogene AC079168.2 1 OTTHUMG00000021271.2 pseudo_consens +62205 chrX ENSEMBL gene 24744441 24744570 130.0 + 0 ENSG00000251869.1 scaRNA SCARNA23 3 +62206 chrX HAVANA gene 24788392 24789069 678.0 - 0 ENSG00000232472.1 processed_pseudogene EEF1B2P3 2 OTTHUMG00000021274.1 +62207 chrX HAVANA gene 24693919 24996986 6336.0 + 0 ENSG00000101868.10 protein_coding POLA1 2 OTTHUMG00000021277.2 ncRNA_host +62208 chrX HAVANA gene 25003694 25016420 3097.0 - 0 ENSG00000004848.7 protein_coding ARX 2 OTTHUMG00000021275.4 +62209 chrX HAVANA gene 25029545 25030235 691.0 + 0 ENSG00000214111.3 processed_pseudogene AC002504.1 1 OTTHUMG00000021276.2 pseudo_consens +62210 chrX ENSEMBL gene 25060649 25060939 291.0 - 0 ENSG00000240439.3 misc_RNA RN7SL91P 3 +62211 chrX HAVANA gene 25194381 25195207 827.0 - 0 ENSG00000176812.7 processed_pseudogene AC112778.1 1 OTTHUMG00000021278.1 pseudo_consens +62212 chrX HAVANA gene 25591353 25591808 456.0 - 0 ENSG00000229310.1 processed_pseudogene RPP40P1 1 OTTHUMG00000021279.1 pseudo_consens +62213 chrX HAVANA gene 25645722 25646327 606.0 - 0 ENSG00000228519.3 processed_pseudogene AC097263.1 2 OTTHUMG00000021280.1 +62214 chrX HAVANA gene 25878339 25893544 550.0 + 0 ENSG00000233403.1 lincRNA AC121342.1 2 OTTHUMG00000021281.1 +62215 chrX HAVANA gene 26138343 26140735 1811.0 + 0 ENSG00000176774.5 protein_coding MAGEB18 2 OTTHUMG00000021282.1 retrogene +62216 chrX HAVANA gene 26147774 26148281 508.0 + 0 ENSG00000232446.1 unprocessed_pseudogene AC129850.1 1 OTTHUMG00000021283.1 pseudo_consens +62217 chrX HAVANA gene 26160601 26161824 1224.0 + 0 ENSG00000232030.3 protein_coding MAGEB6B 2 OTTHUMG00000021284.4 +62218 chrX HAVANA gene 26170052 26170913 862.0 + 0 ENSG00000227511.1 unprocessed_pseudogene AC005297.1 1 OTTHUMG00000021286.1 pseudo_consens +62219 chrX HAVANA gene 26192440 26195646 1949.0 + 0 ENSG00000176746.6 protein_coding MAGEB6 2 OTTHUMG00000021285.1 retrogene +62220 chrX HAVANA gene 26200042 26200647 606.0 + 0 ENSG00000232644.1 unprocessed_pseudogene AC005297.2 1 OTTHUMG00000021287.1 pseudo_consens +62221 chrX HAVANA gene 26216169 26218270 1216.0 + 0 ENSG00000188408.5 protein_coding MAGEB5 2 OTTHUMG00000021288.2 retrogene +62222 chrX HAVANA gene 26223903 26224658 756.0 + 0 ENSG00000237171.1 unprocessed_pseudogene AC005297.3 1 OTTHUMG00000021289.1 pseudo_consens +62223 chrX HAVANA gene 26345236 26346242 650.0 + 0 ENSG00000228464.1 processed_pseudogene AC073614.1 1 OTTHUMG00000021290.1 pseudo_consens +62224 chrX HAVANA gene 26496936 26505603 1624.0 + 0 ENSG00000231388.1 processed_pseudogene AC079178.2 2 OTTHUMG00000021292.1 +62225 chrX HAVANA gene 26557675 26558330 656.0 + 0 ENSG00000230265.1 processed_pseudogene AC079178.1 1 OTTHUMG00000021291.1 pseudo_consens +62226 chrX HAVANA gene 26558337 26561052 2716.0 + 0 ENSG00000259849.1 lincRNA VENTXP1 2 OTTHUMG00000175433.1 +62227 chrX HAVANA gene 26657291 26657507 217.0 - 0 ENSG00000236160.1 processed_pseudogene AC005345.1 2 OTTHUMG00000021294.1 +62228 chrX HAVANA gene 26686026 26687955 758.0 + 0 ENSG00000216938.3 processed_pseudogene RPL7P58 1 OTTHUMG00000021293.1 pseudo_consens +62229 chrX HAVANA gene 26748029 26749090 1062.0 + 0 ENSG00000236683.3 processed_pseudogene HMGA1P1 2 OTTHUMG00000021295.1 +62230 chrX ENSEMBL gene 26790142 26790286 145.0 + 0 ENSG00000252491.1 snRNA RNU1-142P 3 +62231 chrX HAVANA gene 27042907 27176298 887.0 - 0 ENSG00000242021.2 lincRNA AC112493.1 2 OTTHUMG00000021297.2 overlapping_locus +62232 chrX HAVANA gene 27218131 27218678 548.0 - 0 ENSG00000233807.1 processed_pseudogene AC097262.1 1 OTTHUMG00000021296.1 pseudo_consens,overlapping_locus +62233 chrX ENSEMBL gene 27252119 27252235 117.0 - 0 ENSG00000252486.1 misc_RNA RF00019 3 +62234 chrX HAVANA gene 27174920 27398997 2820.0 - 0 ENSG00000228933.7 lincRNA AC107419.1 2 OTTHUMG00000021298.2 ncRNA_host,overlapping_locus +62235 chrX HAVANA gene 27427777 27428231 455.0 - 0 ENSG00000235642.1 processed_pseudogene PTP4A1P5 1 OTTHUMG00000021299.1 pseudo_consens +62236 chrX HAVANA gene 27460211 27463341 3131.0 - 0 ENSG00000224960.4 protein_coding PPP4R3C 2 OTTHUMG00000021300.3 retrogene +62237 chrX HAVANA gene 27517771 27517881 111.0 - 0 ENSG00000223391.2 processed_pseudogene AC006210.1 2 OTTHUMG00000021301.2 +62238 chrX HAVANA gene 27517884 27519759 1545.0 + 0 ENSG00000238247.2 processed_pseudogene AC006210.2 1 OTTHUMG00000021302.3 pseudo_consens +62239 chrX HAVANA gene 27590382 27748821 4449.0 + 0 ENSG00000189186.10 protein_coding DCAF8L2 2 OTTHUMG00000021305.5 retrogene +62240 chrX HAVANA gene 27811885 27812902 1018.0 + 0 ENSG00000229731.1 processed_pseudogene AC107613.1 1 OTTHUMG00000021303.1 pseudo_consens,overlapping_locus +62241 chrX HAVANA gene 27807990 27823014 1953.0 + 0 ENSG00000177689.10 protein_coding MAGEB10 2 OTTHUMG00000046084.1 overlapping_locus,retrogene +62242 chrX HAVANA gene 27832175 27833204 1030.0 + 0 ENSG00000226199.1 processed_pseudogene AC112492.2 1 OTTHUMG00000021311.1 pseudo_consens +62243 chrX HAVANA gene 27847588 27847939 352.0 - 0 ENSG00000232834.1 processed_pseudogene AC112492.4 2 OTTHUMG00000021306.1 +62244 chrX HAVANA gene 27854323 27855353 1031.0 + 0 ENSG00000228345.2 processed_pseudogene AC112492.3 1 OTTHUMG00000021307.1 pseudo_consens +62245 chrX HAVANA gene 27863893 27864349 457.0 + 0 ENSG00000233243.1 processed_pseudogene AC112492.5 1 OTTHUMG00000021308.1 pseudo_consens +62246 chrX HAVANA gene 27893348 27894059 712.0 - 0 ENSG00000224589.1 processed_pseudogene AC112492.1 1 OTTHUMG00000021309.1 pseudo_consens +62247 chrX HAVANA gene 27977993 27981449 3457.0 - 0 ENSG00000226372.3 protein_coding DCAF8L1 2 OTTHUMG00000021312.3 retrogene +62248 chrX ENSEMBL gene 28495555 28495663 109.0 - 0 ENSG00000277569.1 miRNA MIR6134 3 +62249 chrX HAVANA gene 28571532 28586395 756.0 - 0 ENSG00000223742.1 lincRNA AC112495.1 1 OTTHUMG00000021313.1 +62250 chrX HAVANA gene 28659065 28659469 405.0 - 0 ENSG00000226436.1 processed_pseudogene AC002367.1 1 OTTHUMG00000021314.1 pseudo_consens +62251 chrX ENSEMBL gene 28924069 28924138 70.0 + 0 ENSG00000201666.1 snoRNA RF00284 3 +62252 chrX HAVANA gene 28942050 28942568 465.0 + 0 ENSG00000237994.1 sense_intronic AC003659.1 2 OTTHUMG00000021315.1 overlapping_locus +62253 chrX ENSEMBL gene 28982852 28982970 119.0 - 0 ENSG00000201356.1 rRNA_pseudogene RNA5SP500 3 +62254 chrX HAVANA gene 29369001 29369845 845.0 - 0 ENSG00000227393.1 processed_pseudogene AL031575.1 2 OTTHUMG00000021316.1 +62255 chrX ENSEMBL gene 29574278 29574358 81.0 + 0 ENSG00000264090.1 miRNA MIR4666B 3 +62256 chrX HAVANA gene 28587399 29956723 3668.0 + 0 ENSG00000169306.9 protein_coding IL1RAPL1 2 OTTHUMG00000021317.1 ncRNA_host,overlapping_locus +62257 chrX HAVANA gene 30017160 30017881 722.0 - 0 ENSG00000227592.1 processed_pseudogene PIGFP3 1 OTTHUMG00000021318.1 pseudo_consens +62258 chrX HAVANA gene 30209423 30210209 787.0 + 0 ENSG00000270794.1 processed_pseudogene AC005185.1 1 OTTHUMG00000184990.1 pseudo_consens +62259 chrX HAVANA gene 30215560 30220089 1610.0 + 0 ENSG00000099399.5 protein_coding MAGEB2 2 OTTHUMG00000021319.1 retrogene +62260 chrX HAVANA gene 30230436 30237492 2305.0 + 0 ENSG00000198798.5 protein_coding MAGEB3 2 OTTHUMG00000021320.3 retrogene +62261 chrX HAVANA gene 30242052 30244193 2142.0 + 0 ENSG00000120289.11 protein_coding MAGEB4 2 OTTHUMG00000021321.1 overlapping_locus,retrogene +62262 chrX HAVANA gene 30243730 30252038 1969.0 + 0 ENSG00000214107.7 protein_coding MAGEB1 2 OTTHUMG00000021322.1 overlapping_locus,retrogene +62263 chrX HAVANA gene 30290047 30290351 305.0 - 0 ENSG00000276940.1 unprocessed_pseudogene PLCE1P1 2 OTTHUMG00000188010.1 +62264 chrX HAVANA gene 30304206 30309598 2203.0 - 0 ENSG00000169297.7 protein_coding NR0B1 2 OTTHUMG00000021323.1 +62265 chrX HAVANA gene 30558824 30577844 1855.0 - 0 ENSG00000120280.5 protein_coding CXorf21 2 OTTHUMG00000021325.1 +62266 chrX HAVANA gene 30617454 30617693 240.0 + 0 ENSG00000178556.8 processed_pseudogene CKS1BP6 1 OTTHUMG00000021326.2 pseudo_consens +62267 chrX HAVANA gene 30630298 30630825 528.0 + 0 ENSG00000232368.1 processed_pseudogene FTLP2 1 OTTHUMG00000021327.2 pseudo_consens +62268 chrX HAVANA gene 30671635 30672166 397.0 + 0 ENSG00000229331.1 sense_intronic GK-IT1 2 OTTHUMG00000021324.1 overlapping_locus +62269 chrX HAVANA gene 30698207 30721932 562.0 + 0 ENSG00000241886.1 sense_intronic AC112496.1 2 OTTHUMG00000159435.1 overlapping_locus +62270 chrX HAVANA gene 30699998 30724174 651.0 - 0 ENSG00000243055.1 antisense GK-AS1 2 OTTHUMG00000159434.1 +62271 chrX HAVANA gene 30653359 30731456 5359.0 + 0 ENSG00000198814.12 protein_coding GK 1 OTTHUMG00000021328.3 overlapping_locus +62272 chrX HAVANA gene 30821815 30823407 1211.0 - 0 ENSG00000277876.1 unprocessed_pseudogene AC108359.1 2 OTTHUMG00000188011.2 +62273 chrX HAVANA gene 30834623 30835300 245.0 + 0 ENSG00000231542.1 antisense TAB3-AS1 2 OTTHUMG00000021331.2 +62274 chrX HAVANA gene 30854321 30854707 292.0 + 0 ENSG00000235512.1 antisense TAB3-AS2 2 OTTHUMG00000021330.2 +62275 chrX HAVANA gene 30827442 30975084 12711.0 - 0 ENSG00000157625.15 protein_coding TAB3 2 OTTHUMG00000021329.8 +62276 chrX HAVANA gene 31071241 31072053 813.0 - 0 ENSG00000132446.6 protein_coding FTHL17 2 OTTHUMG00000021332.1 retrogene +62277 chrX ENSEMBL gene 31348192 31348296 105.0 + 0 ENSG00000252903.2 snRNA RNU6-894P 3 +62278 chrX HAVANA gene 31411033 31413701 2089.0 + 0 ENSG00000285900.1 antisense AC079177.1 2 OTTHUMG00000192691.1 +62279 chrX ENSEMBL gene 32102065 32102176 112.0 + 0 ENSG00000222922.1 rRNA_pseudogene RNA5SP501 3 +62280 chrX HAVANA gene 32205902 32206738 837.0 + 0 ENSG00000236285.1 processed_pseudogene NPM1P8 1 OTTHUMG00000021333.1 pseudo_consens +62281 chrX ENSEMBL gene 32583656 32583752 97.0 - 0 ENSG00000263600.1 miRNA MIR3915 3 +62282 chrX ENSEMBL gene 32641474 32641559 86.0 - 0 ENSG00000221348.1 miRNA MIR548F5 3 +62283 chrX HAVANA gene 32754940 32756400 293.0 + 0 ENSG00000236828.1 antisense DMD-AS3 2 OTTHUMG00000021334.1 +62284 chrX HAVANA gene 33041395 33041721 327.0 + 0 ENSG00000226781.1 processed_pseudogene TBCAP1 1 OTTHUMG00000021335.1 pseudo_consens +62285 chrX HAVANA gene 31097677 33339441 18910.0 - 0 ENSG00000198947.15 protein_coding DMD 1 OTTHUMG00000021336.7 ncRNA_host +62286 chrX HAVANA gene 33410944 33412173 1230.0 + 0 ENSG00000215310.2 processed_pseudogene AL050305.1 1 OTTHUMG00000021337.1 pseudo_consens +62287 chrX HAVANA gene 33726508 33942280 512.0 + 0 ENSG00000233928.5 lincRNA AL591501.1 2 OTTHUMG00000021338.1 +62288 chrX HAVANA gene 34129756 34132314 2559.0 - 0 ENSG00000185448.10 protein_coding FAM47A 2 OTTHUMG00000021339.1 retrogene +62289 chrX HAVANA gene 34147036 34147586 551.0 + 0 ENSG00000185638.9 processed_pseudogene FTH1P14 1 OTTHUMG00000021340.1 pseudo_consens +62290 chrX HAVANA gene 34387722 34388464 743.0 + 0 ENSG00000236072.1 processed_pseudogene AL592043.2 1 OTTHUMG00000021341.1 pseudo_consens +62291 chrX HAVANA gene 34206725 34415537 526.0 - 0 ENSG00000233571.1 lincRNA AL592043.1 2 OTTHUMG00000021342.1 +62292 chrX HAVANA gene 34516920 34517358 439.0 + 0 ENSG00000271136.1 processed_pseudogene AL592504.1 1 OTTHUMG00000184993.1 pseudo_consens +62293 chrX HAVANA gene 34627064 34657288 4054.0 - 0 ENSG00000147027.3 protein_coding TMEM47 2 OTTHUMG00000021343.1 +62294 chrX HAVANA gene 34717440 34717992 553.0 - 0 ENSG00000225384.1 processed_pseudogene AL606662.1 1 OTTHUMG00000021344.1 pseudo_consens +62295 chrX HAVANA gene 34768327 34768688 362.0 - 0 ENSG00000273704.1 unprocessed_pseudogene AL596245.1 2 OTTHUMG00000188013.1 +62296 chrX HAVANA gene 34942796 34944915 2120.0 + 0 ENSG00000189132.6 protein_coding FAM47B 2 OTTHUMG00000021345.1 retrogene +62297 chrX HAVANA gene 35058927 35059974 1048.0 + 0 ENSG00000229347.1 processed_pseudogene AL596268.1 1 OTTHUMG00000021346.1 pseudo_consens +62298 chrX ENSEMBL gene 35594173 35594273 101.0 + 0 ENSG00000252411.1 snRNA RNU6-1087P 3 +62299 chrX HAVANA gene 35626142 35627064 923.0 + 0 ENSG00000230227.4 processed_pseudogene SIAH1P1 1 OTTHUMG00000021347.2 pseudo_consens +62300 chrX HAVANA gene 35710911 35711942 1032.0 + 0 ENSG00000233663.1 processed_pseudogene AL161722.1 1 OTTHUMG00000045352.1 pseudo_consens +62301 chrX HAVANA gene 35741600 35744582 2983.0 + 0 ENSG00000271088.1 processed_pseudogene AL161722.3 1 OTTHUMG00000184996.1 pseudo_consens +62302 chrX HAVANA gene 35761499 35762479 981.0 + 0 ENSG00000233880.1 processed_pseudogene AL161722.2 1 OTTHUMG00000021349.2 pseudo_consens +62303 chrX HAVANA gene 35798342 35803735 1986.0 + 0 ENSG00000189023.10 protein_coding MAGEB16 2 OTTHUMG00000021348.8 retrogene +62304 chrX HAVANA gene 35864858 35869631 4774.0 + 0 ENSG00000271519.1 processed_pseudogene AL590065.1 1 OTTHUMG00000184997.1 pseudo_consens +62305 chrX ENSEMBL gene 36021939 36022045 107.0 - 0 ENSG00000206733.1 snRNA RNU6-641P 3 +62306 chrX HAVANA gene 36211096 36211635 540.0 + 0 ENSG00000229384.2 processed_pseudogene HMGB1P16 1 OTTHUMG00000021352.1 pseudo_consens +62307 chrX HAVANA gene 36374793 36375183 391.0 - 0 ENSG00000233921.2 processed_pseudogene RPS15AP40 1 OTTHUMG00000021355.2 pseudo_consens,overlapping_locus +62308 chrX HAVANA gene 35919734 36385319 11445.0 + 0 ENSG00000165164.13 protein_coding CFAP47 2 OTTHUMG00000021351.6 +62309 chrX HAVANA gene 36365626 36440292 1861.0 - 0 ENSG00000226484.2 antisense AL606516.1 2 OTTHUMG00000021356.2 overlapping_locus +62310 chrX HAVANA gene 36719918 36720221 304.0 + 0 ENSG00000249467.1 processed_pseudogene AL592156.1 2 OTTHUMG00000021357.2 +62311 chrX HAVANA gene 36794500 36795460 559.0 - 0 ENSG00000275314.1 unprocessed_pseudogene AC006924.1 2 OTTHUMG00000188017.1 +62312 chrX HAVANA gene 36957913 36958139 227.0 + 0 ENSG00000235510.1 unprocessed_pseudogene BX842568.4 1 OTTHUMG00000024023.1 pseudo_consens +62313 chrX HAVANA gene 36962196 36963425 1230.0 - 0 ENSG00000223723.1 processed_pseudogene BX842568.2 2 OTTHUMG00000024024.1 +62314 chrX HAVANA gene 36985523 36986093 571.0 - 0 ENSG00000231069.1 unprocessed_pseudogene BX842568.3 2 OTTHUMG00000024027.1 +62315 chrX HAVANA gene 37008397 37011666 3270.0 + 0 ENSG00000198173.4 protein_coding FAM47C 2 OTTHUMG00000024025.1 retrogene +62316 chrX HAVANA gene 37043023 37043571 549.0 - 0 ENSG00000243048.3 unprocessed_pseudogene FTH1P18 1 OTTHUMG00000033090.1 pseudo_consens +62317 chrX HAVANA gene 37077851 37078401 551.0 - 0 ENSG00000214071.4 unprocessed_pseudogene BX842568.1 1 OTTHUMG00000033091.1 pseudo_consens +62318 chrX HAVANA gene 37291168 37292227 614.0 + 0 ENSG00000233810.1 processed_pseudogene MOB1AP2 1 OTTHUMG00000021358.2 pseudo_consens +62319 chrX HAVANA gene 37441523 37442068 546.0 + 0 ENSG00000241607.1 unprocessed_pseudogene AC245096.1 2 OTTHUMG00000021359.2 overlapping_locus +62320 chrX HAVANA gene 37349275 37457295 6180.0 + 0 ENSG00000130962.17 protein_coding PRRG1 1 OTTHUMG00000021360.3 overlapping_locus +62321 chrX HAVANA gene 37492021 37492548 528.0 + 0 ENSG00000219186.2 unprocessed_pseudogene FTH1P19 1 OTTHUMG00000033179.2 pseudo_consens,overlapping_locus +62322 chrX HAVANA gene 37505310 37505860 551.0 + 0 ENSG00000234355.3 unprocessed_pseudogene FTH1P27 1 OTTHUMG00000033173.2 pseudo_consens,overlapping_locus +62323 chrX HAVANA gene 37541077 37545262 3290.0 - 0 ENSG00000174678.9 processed_pseudogene FAM47DP 1 OTTHUMG00000033174.1 pseudo_consens +62324 chrX HAVANA gene 37571569 37684463 10298.0 + 0 ENSG00000147036.11 protein_coding LANCL3 2 OTTHUMG00000033177.2 overlapping_locus +62325 chrX HAVANA gene 37700040 37700277 238.0 + 0 ENSG00000285944.1 unprocessed_pseudogene AC233297.1 2 OTTHUMG00000193387.1 +62326 chrX HAVANA gene 37685756 37732130 5209.0 + 0 ENSG00000047597.6 protein_coding XK 2 OTTHUMG00000033171.2 overlapping_locus +62327 chrX HAVANA gene 37780011 37813461 4423.0 + 0 ENSG00000165168.7 protein_coding CYBB 2 OTTHUMG00000033175.1 overlapping_locus +62328 chrX HAVANA gene 37836757 37847637 3186.0 - 0 ENSG00000165169.10 protein_coding DYNLT3 2 OTTHUMG00000033172.1 +62329 chrX ENSEMBL gene 37870109 37870215 107.0 + 0 ENSG00000206983.1 snRNA RNU6-49P 3 +62330 chrX HAVANA gene 37945884 37946775 892.0 + 0 ENSG00000224339.1 processed_pseudogene AL121578.1 1 OTTHUMG00000039781.2 pseudo_consens,overlapping_locus +62331 chrX HAVANA gene 37906147 37949405 710.0 + 0 ENSG00000259977.1 lincRNA AL121578.3 2 OTTHUMG00000033178.1 overlapping_locus +62332 chrX HAVANA gene 37990817 37991317 501.0 + 0 ENSG00000187516.6 protein_coding HYPM 2 OTTHUMG00000033180.1 overlapping_locus +62333 chrX HAVANA gene 37994252 37994918 667.0 + 0 ENSG00000229674.2 protein_coding AL121578.2 2 OTTHUMG00000150277.2 overlapping_locus +62334 chrX ENSEMBL gene 38023895 38023986 92.0 - 0 ENSG00000221466.2 miRNA MIR548AJ2 3 +62335 chrX HAVANA gene 38006582 38128819 4791.0 + 0 ENSG00000147041.11 protein_coding SYTL5 2 OTTHUMG00000033176.1 overlapping_locus +62336 chrX HAVANA gene 38149336 38220924 1987.0 - 0 ENSG00000101955.14 protein_coding SRPX 2 OTTHUMG00000021362.1 +62337 chrX HAVANA gene 38221391 38223667 655.0 + 0 ENSG00000226679.1 antisense AL606748.1 1 OTTHUMG00000021363.1 overlapping_locus +62338 chrX ENSEMBL gene 38308112 38308241 130.0 - 0 ENSG00000252050.1 snoRNA RF00322 3 +62339 chrX HAVANA gene 38269163 38327564 7143.0 - 0 ENSG00000156313.13 protein_coding RPGR 2 OTTHUMG00000021361.16 ncRNA_host +62340 chrX HAVANA gene 38395369 38395895 527.0 - 0 ENSG00000227988.1 processed_pseudogene TDGF1P1 1 OTTHUMG00000024089.1 pseudo_consens +62341 chrX HAVANA gene 38352545 38421450 1585.0 + 0 ENSG00000036473.7 protein_coding OTC 2 OTTHUMG00000022727.3 overlapping_locus +62342 chrX HAVANA gene 38479215 38479913 699.0 + 0 ENSG00000232370.1 processed_pseudogene AF241726.1 1 OTTHUMG00000024086.1 pseudo_consens,overlapping_locus +62343 chrX HAVANA gene 38484752 38485264 513.0 - 0 ENSG00000229735.1 processed_pseudogene FTLP16 1 OTTHUMG00000024087.1 pseudo_consens +62344 chrX HAVANA gene 38531923 38534174 2252.0 - 0 ENSG00000233007.1 processed_pseudogene UBTFL11 1 OTTHUMG00000024088.2 pseudo_consens +62345 chrX ENSEMBL gene 38608215 38608276 62.0 + 0 ENSG00000238606.1 snRNA RNU7-7P 3 +62346 chrX HAVANA gene 37349330 38687674 954.0 + 0 ENSG00000250349.3 protein_coding AF241726.2 2 OTTHUMG00000161009.1 ncRNA_host,overlapping_locus +62347 chrX HAVANA gene 38561370 38688920 3110.0 + 0 ENSG00000156298.12 protein_coding TSPAN7 2 OTTHUMG00000024090.4 ncRNA_host,overlapping_locus +62348 chrX HAVANA gene 38770331 38799658 1180.0 + 0 ENSG00000235806.1 lincRNA AF241728.1 1 OTTHUMG00000024091.3 +62349 chrX HAVANA gene 38801568 38803883 376.0 - 0 ENSG00000238123.1 antisense MID1IP1-AS1 2 OTTHUMG00000024093.1 +62350 chrX HAVANA gene 38801432 38806537 3790.0 + 0 ENSG00000165175.15 protein_coding MID1IP1 2 OTTHUMG00000024092.3 +62351 chrX ENSEMBL gene 39081180 39081285 106.0 - 0 ENSG00000207122.1 snRNA RNU6-591P 3 +62352 chrX HAVANA gene 39226103 39299786 828.0 - 0 ENSG00000224610.1 lincRNA AC108879.1 2 OTTHUMG00000024094.1 +62353 chrX HAVANA gene 39304956 39327362 1773.0 - 0 ENSG00000235304.1 lincRNA LINC01281 2 OTTHUMG00000024095.2 +62354 chrX HAVANA gene 39367285 39391774 880.0 - 0 ENSG00000236747.2 lincRNA LINC01282 2 OTTHUMG00000024096.3 +62355 chrX HAVANA gene 39401252 39434824 786.0 - 0 ENSG00000234191.1 lincRNA AC091808.1 2 OTTHUMG00000024097.1 +62356 chrX ENSEMBL gene 39661216 39661321 106.0 + 0 ENSG00000263730.1 miRNA MIR3937 3 +62357 chrX ENSEMBL gene 39786524 39786823 300.0 - 0 ENSG00000264618.2 misc_RNA RN7SL732P 3 +62358 chrX HAVANA gene 39787132 39788136 1005.0 - 0 ENSG00000228232.1 processed_pseudogene GAPDHP1 1 OTTHUMG00000024098.1 pseudo_consens +62359 chrX HAVANA gene 39791580 39791904 325.0 - 0 ENSG00000270759.1 processed_pseudogene AC091810.1 1 OTTHUMG00000184998.1 pseudo_consens +62360 chrX ENSEMBL gene 39837561 39837613 53.0 + 0 ENSG00000263972.1 miRNA MIR1587 3 +62361 chrX HAVANA gene 39837536 39848358 1976.0 - 0 ENSG00000261435.1 lincRNA AL592164.1 2 OTTHUMG00000175535.1 +62362 chrX HAVANA gene 39865424 39865888 465.0 + 0 ENSG00000214047.4 processed_pseudogene RPS11P7 1 OTTHUMG00000021364.4 pseudo_consens +62363 chrX HAVANA gene 39908309 39914419 1330.0 + 0 ENSG00000285709.1 lincRNA AL592164.2 2 OTTHUMG00000193165.1 +62364 chrX HAVANA gene 40009276 40012182 2691.0 + 0 ENSG00000223486.1 lincRNA AC092198.1 2 OTTHUMG00000024099.2 +62365 chrX HAVANA gene 40049815 40177329 8544.0 - 0 ENSG00000183337.16 protein_coding BCOR 1 OTTHUMG00000024100.4 +62366 chrX HAVANA gene 40262917 40287720 3120.0 + 0 ENSG00000236393.1 lincRNA AC091806.1 2 OTTHUMG00000033140.1 +62367 chrX HAVANA gene 40359183 40360726 1544.0 - 0 ENSG00000214045.3 processed_pseudogene AC091807.1 1 OTTHUMG00000024101.1 pseudo_consens +62368 chrX ENSEMBL gene 40492844 40492941 98.0 + 0 ENSG00000206677.2 misc_RNA RF00019 3 +62369 chrX HAVANA gene 40514895 40515508 221.0 + 0 ENSG00000235685.2 processed_pseudogene AC092473.1 2 OTTHUMG00000024102.2 +62370 chrX ENSEMBL gene 40535502 40535563 62.0 - 0 ENSG00000238730.1 snRNA RNU7-164P 3 +62371 chrX HAVANA gene 40579372 40606848 9560.0 + 0 ENSG00000182220.14 protein_coding ATP6AP2 2 OTTHUMG00000024103.7 +62372 chrX HAVANA gene 40623566 40624136 571.0 + 0 ENSG00000238205.3 protein_coding MPC1L 2 OTTHUMG00000024105.3 retrogene +62373 chrX HAVANA gene 40626921 40647554 6043.0 - 0 ENSG00000185753.12 protein_coding CXorf38 2 OTTHUMG00000024104.4 +62374 chrX HAVANA gene 40648306 40735858 9656.0 - 0 ENSG00000180182.10 protein_coding MED14 2 OTTHUMG00000024107.1 +62375 chrX HAVANA gene 40735400 40738701 900.0 + 0 ENSG00000234636.2 antisense MED14OS 2 OTTHUMG00000024106.3 +62376 chrX HAVANA gene 40758483 40759050 568.0 + 0 ENSG00000270791.1 processed_pseudogene DPRXP6 1 OTTHUMG00000185001.1 pseudo_consens +62377 chrX HAVANA gene 40760104 40761270 1167.0 - 0 ENSG00000214031.2 processed_pseudogene AC092474.1 1 OTTHUMG00000024108.1 pseudo_consens +62378 chrX HAVANA gene 40831844 40832562 719.0 - 0 ENSG00000237661.1 processed_pseudogene AC092474.2 1 OTTHUMG00000024110.1 pseudo_consens +62379 chrX HAVANA gene 40834485 40836005 1521.0 + 0 ENSG00000238222.3 processed_pseudogene MKRN4P 2 OTTHUMG00000024109.4 +62380 chrX HAVANA gene 40890647 40891537 891.0 - 0 ENSG00000232801.1 processed_pseudogene SDCBPP3 1 OTTHUMG00000024113.1 pseudo_consens +62381 chrX HAVANA gene 40907987 40908391 405.0 + 0 ENSG00000189145.7 processed_pseudogene AC092268.1 1 OTTHUMG00000024111.2 pseudo_consens +62382 chrX HAVANA gene 40934982 40935864 883.0 - 0 ENSG00000216866.5 processed_pseudogene RPS2P55 1 OTTHUMG00000024112.2 pseudo_consens +62383 chrX HAVANA gene 41076999 41077750 752.0 + 0 ENSG00000237931.1 processed_pseudogene CLIC4P3 1 OTTHUMG00000021365.1 pseudo_consens +62384 chrX HAVANA gene 41085635 41236579 13962.0 + 0 ENSG00000124486.12 protein_coding USP9X 2 OTTHUMG00000021367.4 overlapping_locus +62385 chrX HAVANA gene 41275739 41276778 835.0 + 0 ENSG00000223714.1 lincRNA LINC02601 1 OTTHUMG00000021366.1 +62386 chrX ENSEMBL gene 41292798 41292916 119.0 + 0 ENSG00000199564.1 rRNA_pseudogene RNA5SP502 3 +62387 chrX ENSEMBL gene 41316488 41316589 102.0 + 0 ENSG00000238426.1 misc_RNA RF00019 3 +62388 chrX HAVANA gene 41322601 41323111 511.0 - 0 ENSG00000226641.1 processed_pseudogene AL391647.1 1 OTTHUMG00000021368.1 pseudo_consens +62389 chrX ENSEMBL gene 41345576 41345876 301.0 - 0 ENSG00000264573.2 misc_RNA RN7SL15P 3 +62390 chrX HAVANA gene 41333284 41364472 15892.0 + 0 ENSG00000215301.10 protein_coding DDX3X 2 OTTHUMG00000021369.22 +62391 chrX HAVANA gene 41472264 41472653 390.0 - 0 ENSG00000225238.1 processed_pseudogene Z93015.1 2 OTTHUMG00000021371.1 +62392 chrX HAVANA gene 41447434 41475710 2988.0 + 0 ENSG00000188937.5 protein_coding NYX 2 OTTHUMG00000021370.1 +62393 chrX HAVANA gene 41520036 41522336 515.0 + 0 ENSG00000233033.1 antisense CASK-AS1 2 OTTHUMG00000021372.1 +62394 chrX ENSEMBL gene 41570923 41571029 107.0 - 0 ENSG00000212207.1 snRNA RNU6-1321P 3 +62395 chrX HAVANA gene 41675760 41676494 735.0 - 0 ENSG00000217624.2 processed_pseudogene AL627402.1 1 OTTHUMG00000021374.1 pseudo_consens,overlapping_locus +62396 chrX ENSEMBL gene 41683168 41683462 295.0 - 0 ENSG00000242559.3 misc_RNA RN7SL144P 3 +62397 chrX HAVANA gene 41688973 41697277 1928.0 + 0 ENSG00000171659.14 protein_coding GPR34 2 OTTHUMG00000021375.4 +62398 chrX HAVANA gene 41724155 41730135 3349.0 + 0 ENSG00000171657.5 protein_coding GPR82 2 OTTHUMG00000021373.1 +62399 chrX HAVANA gene 41748222 41748608 387.0 + 0 ENSG00000229822.2 processed_pseudogene AL353691.1 1 OTTHUMG00000021376.2 pseudo_consens +62400 chrX HAVANA gene 41790192 41790250 59.0 - 0 ENSG00000237875.1 processed_pseudogene AL353691.2 2 OTTHUMG00000039817.1 overlapping_locus +62401 chrX ENSEMBL gene 41919254 41919349 96.0 - 0 ENSG00000251807.1 snRNA RNU6-202P 3 +62402 chrX HAVANA gene 41514934 41923645 19939.0 - 0 ENSG00000147044.21 protein_coding CASK 2 OTTHUMG00000021378.10 ncRNA_host,overlapping_locus +62403 chrX HAVANA gene 42047883 42054836 478.0 - 0 ENSG00000233103.1 lincRNA AL133329.1 2 OTTHUMG00000021379.1 +62404 chrX HAVANA gene 42098754 42099173 420.0 - 0 ENSG00000228847.1 processed_pseudogene ATP5MC2P4 1 OTTHUMG00000021381.1 pseudo_consens +62405 chrX ENSEMBL gene 42139425 42139530 106.0 - 0 ENSG00000212560.1 snRNA RNU6-630P 3 +62406 chrX HAVANA gene 42150511 42150744 234.0 - 0 ENSG00000228780.2 processed_pseudogene Z92545.1 1 OTTHUMG00000021380.2 pseudo_consens +62407 chrX ENSEMBL gene 42174279 42174385 107.0 - 0 ENSG00000206896.1 snRNA RNU6-1124P 3 +62408 chrX HAVANA gene 42285130 42285925 796.0 + 0 ENSG00000283737.1 TEC AL023875.1 2 OTTHUMG00000192099.1 +62409 chrX HAVANA gene 42252459 42699385 1308.0 + 0 ENSG00000231772.5 lincRNA Z93403.1 2 OTTHUMG00000021383.1 +62410 chrX HAVANA gene 42777368 42778247 880.0 - 0 ENSG00000102055.6 protein_coding PPP1R2C 2 OTTHUMG00000021382.5 retrogene +62411 chrX HAVANA gene 43000174 43000396 223.0 + 0 ENSG00000270280.1 processed_pseudogene AL451086.1 1 OTTHUMG00000185004.1 pseudo_consens +62412 chrX HAVANA gene 43176994 43226598 2228.0 + 0 ENSG00000224294.1 lincRNA PINCR 2 OTTHUMG00000021384.1 +62413 chrX HAVANA gene 43278125 43279658 1534.0 - 0 ENSG00000237206.1 processed_pseudogene IMPDH1P4 1 OTTHUMG00000021385.1 pseudo_consens +62414 chrX HAVANA gene 43407665 43408559 895.0 - 0 ENSG00000231750.3 processed_pseudogene NANOGP10 1 OTTHUMG00000021386.2 pseudo_consens +62415 chrX HAVANA gene 43279560 43438657 941.0 + 0 ENSG00000285899.1 lincRNA AL023574.1 2 OTTHUMG00000193226.1 +62416 chrX HAVANA gene 43654907 43746824 5528.0 + 0 ENSG00000189221.9 protein_coding MAOA 2 OTTHUMG00000021387.1 +62417 chrX HAVANA gene 43766611 43882447 2891.0 - 0 ENSG00000069535.13 protein_coding MAOB 2 OTTHUMG00000021388.4 +62418 chrX HAVANA gene 43949732 43969620 737.0 + 0 ENSG00000236276.1 antisense NDP-AS1 2 OTTHUMG00000021390.1 +62419 chrX HAVANA gene 43948776 43973504 1833.0 - 0 ENSG00000124479.9 protein_coding NDP 2 OTTHUMG00000021391.2 +62420 chrX HAVANA gene 44029332 44030921 1590.0 + 0 ENSG00000214019.2 processed_pseudogene AL034370.1 1 OTTHUMG00000021389.1 pseudo_consens +62421 chrX HAVANA gene 44283916 44286246 2331.0 + 0 ENSG00000198414.5 processed_pseudogene TATDN2P1 1 OTTHUMG00000021392.1 pseudo_consens +62422 chrX HAVANA gene 44309314 44310476 1163.0 - 0 ENSG00000214018.3 processed_pseudogene RRM2P3 1 OTTHUMG00000021394.1 pseudo_consens,overlapping_locus +62423 chrX HAVANA gene 44147882 44343672 3319.0 - 0 ENSG00000183690.12 protein_coding EFHC2 2 OTTHUMG00000021393.2 overlapping_locus +62424 chrX ENSEMBL gene 44401603 44401704 102.0 + 0 ENSG00000200702.1 misc_RNA RF00019 3 +62425 chrX HAVANA gene 44466691 44468955 1569.0 + 0 ENSG00000224054.1 processed_pseudogene AL022163.1 1 OTTHUMG00000021396.1 pseudo_consens +62426 chrX HAVANA gene 44476027 44477422 1057.0 - 0 ENSG00000215035.2 processed_pseudogene FDPSP5 1 OTTHUMG00000021395.1 pseudo_consens +62427 chrX HAVANA gene 44523639 44543001 1399.0 - 0 ENSG00000069509.5 protein_coding FUNDC1 2 OTTHUMG00000021399.1 +62428 chrX HAVANA gene 44633692 44635232 1541.0 + 0 ENSG00000233543.1 processed_pseudogene CHTF8P1 1 OTTHUMG00000021397.3 pseudo_consens +62429 chrX HAVANA gene 44649129 44649719 591.0 + 0 ENSG00000229168.4 processed_pseudogene RPL19P20 1 OTTHUMG00000021398.2 pseudo_consens +62430 chrX HAVANA gene 44741087 44741964 878.0 + 0 ENSG00000214016.3 processed_pseudogene RPSAP61 1 OTTHUMG00000021400.1 pseudo_consens +62431 chrX ENSEMBL gene 44772773 44773061 289.0 - 0 ENSG00000242065.3 misc_RNA RN7SL291P 3 +62432 chrX HAVANA gene 44844004 44844888 885.0 + 0 ENSG00000189037.7 protein_coding DUSP21 2 OTTHUMG00000021401.1 retrogene +62433 chrX HAVANA gene 44873177 45112602 7139.0 + 0 ENSG00000147050.14 protein_coding KDM6A 2 OTTHUMG00000021402.2 +62434 chrX HAVANA gene 45148374 45200901 6720.0 - 0 ENSG00000147113.16 protein_coding CXorf36 2 OTTHUMG00000021403.2 +62435 chrX HAVANA gene 45183251 45333917 1725.0 + 0 ENSG00000229491.5 antisense AC136489.1 2 OTTHUMG00000021404.1 +62436 chrX HAVANA gene 45381527 45381995 469.0 - 0 ENSG00000237782.3 processed_pseudogene AL020989.1 1 OTTHUMG00000021405.1 pseudo_consens +62437 chrX HAVANA gene 45505388 45630202 5260.0 + 0 ENSG00000229563.6 lincRNA LINC01204 2 OTTHUMG00000021406.2 +62438 chrX HAVANA gene 45632292 45633733 1442.0 - 0 ENSG00000214282.3 processed_pseudogene KRT8P14 1 OTTHUMG00000021407.2 pseudo_consens +62439 chrX HAVANA gene 45730752 45731688 937.0 + 0 ENSG00000204915.3 processed_pseudogene AC234772.1 1 OTTHUMG00000021408.1 pseudo_consens +62440 chrX ENSEMBL gene 45746157 45746266 110.0 - 0 ENSG00000207870.1 miRNA MIR221 3 +62441 chrX ENSEMBL gene 45747015 45747124 110.0 - 0 ENSG00000207725.3 miRNA MIR222 3 +62442 chrX HAVANA gene 45764772 45765299 528.0 - 0 ENSG00000269902.1 lincRNA AC234772.2 2 OTTHUMG00000184078.1 overlapping_locus +62443 chrX HAVANA gene 45745211 45770274 2785.0 - 0 ENSG00000270069.1 lincRNA MIR222HG 2 OTTHUMG00000184015.3 ncRNA_host,overlapping_locus +62444 chrX HAVANA gene 45848074 45851490 375.0 - 0 ENSG00000231566.1 lincRNA LINC02595 2 OTTHUMG00000021411.1 +62445 chrX ENSEMBL gene 45892912 45892979 68.0 - 0 ENSG00000212347.2 snoRNA RF00591 3 +62446 chrX HAVANA gene 45913118 45913871 754.0 + 0 ENSG00000215286.3 processed_pseudogene AL031584.1 1 OTTHUMG00000021410.1 pseudo_consens +62447 chrX HAVANA gene 45913267 45917040 767.0 - 0 ENSG00000234613.1 lincRNA AL031584.2 2 OTTHUMG00000021409.1 +62448 chrX HAVANA gene 45951762 45952333 572.0 - 0 ENSG00000224701.1 processed_pseudogene MED28P4 1 OTTHUMG00000021412.1 pseudo_consens +62449 chrX HAVANA gene 45983365 45984364 1000.0 + 0 ENSG00000213100.2 processed_pseudogene KRT18P68 1 OTTHUMG00000021413.1 pseudo_consens +62450 chrX HAVANA gene 46058751 46059528 778.0 - 0 ENSG00000214009.2 processed_pseudogene PCNAP3 1 OTTHUMG00000021414.1 pseudo_consens +62451 chrX ENSEMBL gene 46073651 46073935 285.0 - 0 ENSG00000278838.1 misc_RNA RF00017 3 +62452 chrX HAVANA gene 46288016 46289128 1113.0 - 0 ENSG00000229145.1 processed_pseudogene ACTBP1 1 OTTHUMG00000021415.1 pseudo_consens +62453 chrX HAVANA gene 46325924 46327645 626.0 - 0 ENSG00000236751.1 lincRNA LINC01186 2 OTTHUMG00000021416.1 +62454 chrX HAVANA gene 46418450 46420079 1630.0 - 0 ENSG00000231235.1 processed_pseudogene AL139811.2 1 OTTHUMG00000021417.1 pseudo_consens +62455 chrX HAVANA gene 46439709 46440714 1006.0 - 0 ENSG00000235587.2 processed_pseudogene GAPDHP65 1 OTTHUMG00000021418.2 pseudo_consens +62456 chrX HAVANA gene 46454097 46457199 2299.0 - 0 ENSG00000224072.1 processed_pseudogene AL139811.1 1 OTTHUMG00000021419.1 pseudo_consens +62457 chrX HAVANA gene 46446857 46497422 4120.0 + 0 ENSG00000147121.15 protein_coding KRBOX4 2 OTTHUMG00000021421.3 +62458 chrX ENSEMBL gene 46517766 46517868 103.0 + 0 ENSG00000199226.1 snRNA RNU6-50P 3 +62459 chrX HAVANA gene 46497727 46545457 6203.0 - 0 ENSG00000251192.7 protein_coding ZNF674 2 OTTHUMG00000021420.3 +62460 chrX HAVANA gene 46545493 46548408 2078.0 + 0 ENSG00000230844.2 lincRNA ZNF674-AS1 2 OTTHUMG00000021424.2 +62461 chrX ENSEMBL gene 46553522 46553775 254.0 - 0 ENSG00000277721.1 misc_RNA RF00017 3 +62462 chrX HAVANA gene 46560928 46562749 1460.0 - 0 ENSG00000270499.1 processed_pseudogene MKI67P1 1 OTTHUMG00000185006.1 pseudo_consens +62463 chrX HAVANA gene 46573784 46598408 2289.0 + 0 ENSG00000147119.3 protein_coding CHST7 2 OTTHUMG00000021423.1 +62464 chrX HAVANA gene 46646594 46647330 737.0 - 0 ENSG00000213997.3 processed_pseudogene PGAM1P7 1 OTTHUMG00000039871.1 pseudo_consens,overlapping_locus +62465 chrX HAVANA gene 46684765 46685707 943.0 - 0 ENSG00000226048.1 processed_pseudogene YBX1P8 1 OTTHUMG00000021425.1 pseudo_consens,overlapping_locus +62466 chrX HAVANA gene 46725164 46725818 655.0 - 0 ENSG00000215284.2 processed_pseudogene AL512633.1 1 OTTHUMG00000021426.1 pseudo_consens,overlapping_locus +62467 chrX HAVANA gene 46599252 46759172 10033.0 - 0 ENSG00000065923.9 protein_coding SLC9A7 2 OTTHUMG00000021428.1 overlapping_locus +62468 chrX HAVANA gene 46836940 46882358 3803.0 + 0 ENSG00000102218.5 protein_coding RP2 2 OTTHUMG00000021430.1 +62469 chrX HAVANA gene 46887417 46899703 532.0 - 0 ENSG00000204904.7 lincRNA LINC01545 2 OTTHUMG00000021429.1 +62470 chrX HAVANA gene 46912276 47061242 5137.0 + 0 ENSG00000102221.13 protein_coding JADE3 2 OTTHUMG00000021431.5 +62471 chrX ENSEMBL gene 47087506 47087612 107.0 + 0 ENSG00000206685.1 snRNA RNU6-1189P 3 +62472 chrX HAVANA gene 47078355 47093314 2811.0 + 0 ENSG00000130988.12 protein_coding RGN 2 OTTHUMG00000021435.1 ncRNA_host +62473 chrX ENSEMBL gene 47132671 47132826 156.0 + 0 ENSG00000201659.1 snRNA RNU12-2P 3 +62474 chrX HAVANA gene 47142216 47145504 1418.0 - 0 ENSG00000147123.10 protein_coding NDUFB11 2 OTTHUMG00000021433.1 +62475 chrX HAVANA gene 47156638 47158199 1248.0 - 0 ENSG00000237351.1 processed_pseudogene AL513366.1 1 OTTHUMG00000021434.1 pseudo_consens +62476 chrX HAVANA gene 47144869 47186813 3889.0 + 0 ENSG00000182872.15 protein_coding RBM10 2 OTTHUMG00000021432.2 +62477 chrX HAVANA gene 47204921 47205865 945.0 + 0 ENSG00000224975.1 sense_intronic INE1 2 OTTHUMG00000046428.1 overlapping_locus +62478 chrX HAVANA gene 47190861 47215128 6437.0 + 0 ENSG00000130985.16 protein_coding UBA1 2 OTTHUMG00000021436.4 overlapping_locus +62479 chrX HAVANA gene 47217860 47229997 6524.0 + 0 ENSG00000102225.15 protein_coding CDK16 1 OTTHUMG00000021438.4 +62480 chrX HAVANA gene 47232690 47248328 5269.0 + 0 ENSG00000102226.9 protein_coding USP11 1 OTTHUMG00000021437.5 +62481 chrX HAVANA gene 47273366 47274390 635.0 - 0 ENSG00000237623.1 processed_pseudogene AL591503.3 1 OTTHUMG00000021441.2 pseudo_consens +62482 chrX ENSEMBL gene 47280811 47281063 253.0 - 0 ENSG00000266158.2 misc_RNA RN7SL785P 3 +62483 chrX HAVANA gene 47297852 47298721 477.0 + 0 ENSG00000203402.2 lincRNA AL591503.1 2 OTTHUMG00000021439.1 +62484 chrX ENSEMBL gene 47388649 47388777 129.0 + 0 ENSG00000221459.1 snoRNA SNORA11C 3 +62485 chrX HAVANA gene 47389961 47392300 1005.0 - 0 ENSG00000232009.1 processed_pseudogene AL591503.2 1 OTTHUMG00000021440.1 pseudo_consens +62486 chrX HAVANA gene 47370583 47414305 2318.0 + 0 ENSG00000147117.7 protein_coding ZNF157 2 OTTHUMG00000021443.1 ncRNA_host +62487 chrX HAVANA gene 47438736 47439774 714.0 - 0 ENSG00000226556.2 processed_pseudogene NPM1P49 1 OTTHUMG00000021442.1 pseudo_consens +62488 chrX ENSEMBL gene 47476822 47477152 331.0 - 0 ENSG00000277605.1 misc_RNA RF00017 3 +62489 chrX HAVANA gene 47445879 47482946 4784.0 - 0 ENSG00000147124.12 protein_coding ZNF41 2 OTTHUMG00000021448.3 ncRNA_host +62490 chrX HAVANA gene 47483571 47484823 1253.0 + 0 ENSG00000196741.5 lincRNA LINC01560 2 OTTHUMG00000021445.1 +62491 chrX HAVANA gene 47512602 47513483 882.0 - 0 ENSG00000235636.1 processed_pseudogene NUS1P1 2 OTTHUMG00000021444.1 +62492 chrX HAVANA gene 47561100 47571920 3535.0 + 0 ENSG00000078061.12 protein_coding ARAF 2 OTTHUMG00000021446.2 +62493 chrX HAVANA gene 47582313 47586789 1541.0 + 0 ENSG00000102265.11 protein_coding TIMP1 2 OTTHUMG00000021447.2 +62494 chrX ENSEMBL gene 47587429 47587505 77.0 + 0 ENSG00000263858.1 miRNA MIR4769 3 +62495 chrX HAVANA gene 47571898 47619943 3822.0 - 0 ENSG00000008056.13 protein_coding SYN1 2 OTTHUMG00000021454.4 overlapping_locus +62496 chrX HAVANA gene 47605233 47623509 717.0 - 0 ENSG00000283743.1 processed_transcript AL009172.2 2 OTTHUMG00000191999.1 overlapping_locus +62497 chrX HAVANA gene 47623172 47630305 5617.0 - 0 ENSG00000126759.13 protein_coding CFP 2 OTTHUMG00000021451.6 overlapping_locus +62498 chrX HAVANA gene 47635521 47650604 3398.0 - 0 ENSG00000126767.17 protein_coding ELK1 2 OTTHUMG00000021452.3 +62499 chrX HAVANA gene 47651798 47659161 1243.0 - 0 ENSG00000126756.11 protein_coding UXT 2 OTTHUMG00000021453.3 +62500 chrX HAVANA gene 47658833 47660377 1545.0 + 0 ENSG00000267064.1 antisense UXT-AS1 2 OTTHUMG00000180159.1 +62501 chrX HAVANA gene 47718002 47719099 1098.0 - 0 ENSG00000224656.1 processed_pseudogene AL009172.1 1 OTTHUMG00000021449.1 pseudo_consens +62502 chrX HAVANA gene 47707191 47753456 3148.0 + 0 ENSG00000187893.10 transcribed_unprocessed_pseudogene CXXC1P1 2 OTTHUMG00000021450.3 +62503 chrX HAVANA gene 47776827 47778697 1433.0 - 0 ENSG00000229968.1 processed_pseudogene AL022578.1 2 OTTHUMG00000021455.1 +62504 chrX HAVANA gene 47803296 47804789 1494.0 + 0 ENSG00000188459.4 processed_pseudogene WASF4P 1 OTTHUMG00000021456.1 pseudo_consens +62505 chrX HAVANA gene 47840963 47841702 740.0 - 0 ENSG00000224401.2 processed_pseudogene RPL7P57 1 OTTHUMG00000021457.1 pseudo_consens +62506 chrX HAVANA gene 47836902 48002561 8443.0 + 0 ENSG00000197779.13 protein_coding ZNF81 2 OTTHUMG00000021462.3 +62507 chrX HAVANA gene 47974851 48003978 3587.0 - 0 ENSG00000147118.11 protein_coding ZNF182 2 OTTHUMG00000021460.2 overlapping_locus +62508 chrX HAVANA gene 48004336 48009729 732.0 + 0 ENSG00000171489.10 protein_coding SPACA5 2 OTTHUMG00000021459.1 +62509 chrX HAVANA gene 48056310 48066583 397.0 + 0 ENSG00000277541.1 antisense ZNF630-AS1 2 OTTHUMG00000021461.2 +62510 chrX HAVANA gene 47983356 48071658 3676.0 - 0 ENSG00000221994.10 protein_coding ZNF630 1 OTTHUMG00000021463.7 overlapping_locus +62511 chrX HAVANA gene 48107992 48120210 1869.0 + 0 ENSG00000171483.13 transcribed_unprocessed_pseudogene SSX6P 2 OTTHUMG00000021464.3 +62512 chrX HAVANA gene 48130657 48132613 595.0 + 0 ENSG00000171478.7 protein_coding SPACA5B 2 OTTHUMG00000021465.1 +62513 chrX HAVANA gene 48135658 48136159 228.0 - 0 ENSG00000230241.1 processed_pseudogene AC244636.1 1 OTTHUMG00000021466.1 pseudo_consens +62514 chrX ENSEMBL gene 48153980 48154074 95.0 - 0 ENSG00000201517.1 snRNA RNU6-707P 3 +62515 chrX HAVANA gene 48153868 48155941 1669.0 - 0 ENSG00000233139.1 processed_pseudogene AC244636.2 1 OTTHUMG00000021467.2 pseudo_consens +62516 chrX HAVANA gene 48156367 48166350 1300.0 + 0 ENSG00000225198.1 unprocessed_pseudogene SSXP3 2 OTTHUMG00000021468.1 +62517 chrX HAVANA gene 48177731 48178023 293.0 - 0 ENSG00000238032.1 processed_pseudogene AC245047.7 1 OTTHUMG00000021469.1 pseudo_consens +62518 chrX HAVANA gene 48186220 48196763 1484.0 - 0 ENSG00000165583.14 protein_coding SSX5 2 OTTHUMG00000021471.1 +62519 chrX HAVANA gene 48197221 48199431 556.0 + 0 ENSG00000234780.1 processed_pseudogene AC245047.5 1 OTTHUMG00000021470.1 pseudo_consens +62520 chrX ENSEMBL gene 48206258 48206374 117.0 + 0 ENSG00000252856.1 rRNA_pseudogene RNA5SP503 3 +62521 chrX HAVANA gene 48212791 48218010 873.0 + 0 ENSG00000204368.6 processed_pseudogene AC245047.1 2 OTTHUMG00000021472.1 +62522 chrX HAVANA gene 48228833 48228959 127.0 - 0 ENSG00000231568.1 processed_pseudogene AC245047.3 1 OTTHUMG00000021473.1 pseudo_consens +62523 chrX HAVANA gene 48244894 48245745 530.0 + 0 ENSG00000229662.2 processed_pseudogene AC245047.2 1 OTTHUMG00000021475.2 pseudo_consens +62524 chrX HAVANA gene 48255317 48267444 1298.0 + 0 ENSG00000126752.7 protein_coding SSX1 2 OTTHUMG00000021488.1 +62525 chrX HAVANA gene 48274904 48275047 144.0 - 0 ENSG00000232813.1 processed_pseudogene AC245047.4 1 OTTHUMG00000021480.1 pseudo_consens +62526 chrX HAVANA gene 48276704 48277578 284.0 - 0 ENSG00000241207.1 unprocessed_pseudogene AC245047.8 2 OTTHUMG00000021481.1 +62527 chrX HAVANA gene 48279423 48281792 617.0 + 0 ENSG00000237345.1 processed_pseudogene AC245047.6 1 OTTHUMG00000022692.1 pseudo_consens +62528 chrX HAVANA gene 48296816 48306179 821.0 - 0 ENSG00000204648.11 transcribed_unprocessed_pseudogene SSX9P 2 OTTHUMG00000021490.2 +62529 chrX HAVANA gene 48306769 48309055 523.0 + 0 ENSG00000234391.1 processed_pseudogene AL606490.6 1 OTTHUMG00000021482.1 pseudo_consens +62530 chrX HAVANA gene 48322349 48326683 292.0 + 0 ENSG00000227302.1 unprocessed_pseudogene SSXP9 2 OTTHUMG00000021484.1 +62531 chrX HAVANA gene 48333675 48334439 270.0 - 0 ENSG00000230100.1 lincRNA AL606490.3 2 OTTHUMG00000021486.1 +62532 chrX HAVANA gene 48336899 48337169 271.0 - 0 ENSG00000270747.1 processed_pseudogene AL606490.9 1 OTTHUMG00000185038.1 pseudo_consens +62533 chrX HAVANA gene 48346428 48356707 2107.0 - 0 ENSG00000165584.15 protein_coding SSX3 2 OTTHUMG00000021489.2 +62534 chrX HAVANA gene 48357125 48359495 765.0 + 0 ENSG00000225055.1 processed_pseudogene AL606490.1 1 OTTHUMG00000021487.1 pseudo_consens +62535 chrX HAVANA gene 48371905 48372095 191.0 + 0 ENSG00000234448.1 processed_pseudogene AL606490.7 2 OTTHUMG00000021483.1 +62536 chrX HAVANA gene 48383516 48393347 1232.0 + 0 ENSG00000268009.5 protein_coding SSX4 2 OTTHUMG00000022698.4 +62537 chrX HAVANA gene 48402078 48411910 1232.0 - 0 ENSG00000269791.5 protein_coding SSX4B 2 OTTHUMG00000021497.3 +62538 chrX HAVANA gene 48412303 48415285 760.0 + 0 ENSG00000231603.1 processed_pseudogene AL606490.5 1 OTTHUMG00000021485.1 pseudo_consens +62539 chrX HAVANA gene 48423342 48423468 127.0 - 0 ENSG00000231489.1 processed_pseudogene AL606490.4 1 OTTHUMG00000024115.1 pseudo_consens +62540 chrX HAVANA gene 48433201 48441619 319.0 + 0 ENSG00000235350.1 unprocessed_pseudogene AL606490.8 2 OTTHUMG00000021492.2 +62541 chrX HAVANA gene 48446893 48448879 1330.0 - 0 ENSG00000226971.1 processed_pseudogene AL606490.2 1 OTTHUMG00000021493.3 pseudo_consens +62542 chrX HAVANA gene 48458537 48470256 4014.0 - 0 ENSG00000017483.14 protein_coding SLC38A5 2 OTTHUMG00000024117.11 +62543 chrX HAVANA gene 48476021 48486364 2872.0 + 0 ENSG00000068438.14 protein_coding FTSJ1 2 OTTHUMG00000024118.2 +62544 chrX HAVANA gene 48506523 48508838 653.0 - 0 ENSG00000224292.1 antisense AF196972.1 1 OTTHUMG00000021498.2 +62545 chrX HAVANA gene 48508962 48520814 3011.0 + 0 ENSG00000102312.21 protein_coding PORCN 2 OTTHUMG00000024116.8 +62546 chrX ENSEMBL gene 48524480 48524806 327.0 + 0 ENSG00000276823.1 misc_RNA RF00017 3 +62547 chrX HAVANA gene 48521158 48528716 2409.0 + 0 ENSG00000147155.10 protein_coding EBP 2 OTTHUMG00000034482.4 ncRNA_host +62548 chrX HAVANA gene 48539457 48562609 4223.0 + 0 ENSG00000068354.15 protein_coding TBC1D25 2 OTTHUMG00000024123.5 +62549 chrX HAVANA gene 48568014 48574860 549.0 - 0 ENSG00000204620.3 antisense AC115618.1 2 OTTHUMG00000187479.1 +62550 chrX HAVANA gene 48574449 48579066 3731.0 + 0 ENSG00000102317.17 protein_coding RBM3 2 OTTHUMG00000024121.2 +62551 chrX HAVANA gene 48579774 48581157 450.0 - 0 ENSG00000228343.1 antisense AC115618.2 2 OTTHUMG00000024122.1 +62552 chrX HAVANA gene 48580741 48581165 425.0 + 0 ENSG00000279528.1 TEC AC115618.3 2 OTTHUMG00000184123.1 +62553 chrX HAVANA gene 48583093 48583339 247.0 - 0 ENSG00000220125.1 processed_pseudogene MRPL32P1 2 OTTHUMG00000048056.3 +62554 chrX HAVANA gene 48590042 48608867 7884.0 + 0 ENSG00000101940.17 protein_coding WDR13 2 OTTHUMG00000024119.11 +62555 chrX HAVANA gene 48636165 48637135 971.0 + 0 ENSG00000231725.1 processed_pseudogene VN1R110P 2 OTTHUMG00000024120.2 +62556 chrX HAVANA gene 48676596 48691427 2381.0 + 0 ENSG00000015285.10 protein_coding WAS 2 OTTHUMG00000034483.2 +62557 chrX HAVANA gene 48695554 48709012 3368.0 + 0 ENSG00000101945.16 protein_coding SUV39H1 2 OTTHUMG00000022701.3 +62558 chrX ENSEMBL gene 48724455 48724561 107.0 - 0 ENSG00000206723.1 snRNA RNU6-1056P 3 +62559 chrX HAVANA gene 48698963 48737163 925.0 - 0 ENSG00000232828.1 antisense AC231533.1 2 OTTHUMG00000021501.1 ncRNA_host +62560 chrX HAVANA gene 48761750 48773648 1061.0 + 0 ENSG00000171433.11 protein_coding GLOD5 2 OTTHUMG00000024125.2 +62561 chrX HAVANA gene 48775644 48776970 1327.0 - 0 ENSG00000233585.2 transcribed_processed_pseudogene AC231533.2 1 OTTHUMG00000024126.2 pseudo_consens +62562 chrX ENSEMBL gene 48776965 48777071 107.0 - 0 ENSG00000207367.1 snRNA RNU6-29P 3 +62563 chrX HAVANA gene 48786554 48794311 1500.0 + 0 ENSG00000102145.13 protein_coding GATA1 2 OTTHUMG00000021504.2 +62564 chrX HAVANA gene 48801377 48824982 10412.0 + 0 ENSG00000094631.19 protein_coding HDAC6 1 OTTHUMG00000034496.7 +62565 chrX HAVANA gene 48826513 48830138 1303.0 + 0 ENSG00000187682.2 protein_coding ERAS 2 OTTHUMG00000059533.2 retrogene +62566 chrX HAVANA gene 48831094 48835633 1363.0 - 0 ENSG00000102109.8 protein_coding PCSK1N 2 OTTHUMG00000034502.3 +62567 chrX HAVANA gene 48893447 48898143 2562.0 - 0 ENSG00000126768.12 protein_coding TIMM17B 2 OTTHUMG00000034498.6 +62568 chrX HAVANA gene 48897912 48903143 1903.0 + 0 ENSG00000102103.15 protein_coding PQBP1 2 OTTHUMG00000024128.6 +62569 chrX HAVANA gene 48903180 48911958 3745.0 - 0 ENSG00000102100.15 protein_coding SLC35A2 2 OTTHUMG00000024129.6 +62570 chrX HAVANA gene 48913182 48919024 2761.0 - 0 ENSG00000102096.9 protein_coding PIM2 2 OTTHUMG00000024132.2 +62571 chrX HAVANA gene 48939992 48940808 817.0 + 0 ENSG00000279155.1 TEC AC233300.1 2 OTTHUMG00000186881.1 +62572 chrX HAVANA gene 48922028 48958386 3592.0 - 0 ENSG00000068308.13 protein_coding OTUD5 2 OTTHUMG00000024130.2 +62573 chrX ENSEMBL gene 48959179 48959282 104.0 - 0 ENSG00000223309.1 snRNA RNU6-722P 3 +62574 chrX HAVANA gene 48961378 48971569 5807.0 - 0 ENSG00000102057.9 protein_coding KCND1 2 OTTHUMG00000024127.4 +62575 chrX HAVANA gene 48973720 49002264 6841.0 - 0 ENSG00000068400.13 protein_coding GRIPAP1 2 OTTHUMG00000033192.10 +62576 chrX HAVANA gene 49028726 49043486 4283.0 - 0 ENSG00000068323.16 protein_coding TFE3 2 OTTHUMG00000022690.6 +62577 chrX HAVANA gene 49053572 49069857 5318.0 + 0 ENSG00000147144.12 protein_coding CCDC120 2 OTTHUMG00000021509.7 +62578 chrX HAVANA gene 49071156 49074071 1736.0 - 0 ENSG00000243279.3 protein_coding PRAF2 2 OTTHUMG00000034499.4 overlapping_locus +62579 chrX ENSEMBL gene 49082028 49082165 138.0 + 0 ENSG00000206936.1 snRNA RNU4-52P 3 +62580 chrX HAVANA gene 49071470 49101170 5452.0 - 0 ENSG00000196998.17 protein_coding WDR45 2 OTTHUMG00000034500.11 overlapping_locus +62581 chrX HAVANA gene 49113389 49123801 1742.0 - 0 ENSG00000068394.10 protein_coding GPKOW 2 OTTHUMG00000021511.3 +62582 chrX ENSEMBL gene 49152651 49152944 294.0 + 0 ENSG00000265033.2 misc_RNA RN7SL262P 3 +62583 chrX HAVANA gene 49155242 49157351 255.0 - 0 ENSG00000280116.2 unprocessed_pseudogene AC231657.2 2 OTTHUMG00000192101.1 +62584 chrX HAVANA gene 49165576 49165972 397.0 - 0 ENSG00000279422.1 TEC AC231657.1 2 OTTHUMG00000188365.1 +62585 chrX HAVANA gene 49162564 49168483 5107.0 + 0 ENSG00000269313.5 protein_coding MAGIX 2 OTTHUMG00000188218.11 +62586 chrX HAVANA gene 49171926 49175239 1279.0 + 0 ENSG00000102007.10 protein_coding PLP2 2 OTTHUMG00000021513.1 +62587 chrX HAVANA gene 49175264 49186528 3194.0 - 0 ENSG00000012211.12 protein_coding PRICKLE3 2 OTTHUMG00000024134.10 +62588 chrX HAVANA gene 49187804 49200259 5215.0 - 0 ENSG00000102003.10 protein_coding SYP 1 OTTHUMG00000034557.6 +62589 chrX HAVANA gene 49198966 49202454 542.0 + 0 ENSG00000237341.1 antisense SYP-AS1 2 OTTHUMG00000024133.1 +62590 chrX HAVANA gene 49205063 49233371 6928.0 - 0 ENSG00000102001.12 protein_coding CACNA1F 1 OTTHUMG00000022703.4 +62591 chrX HAVANA gene 49233956 49234501 546.0 - 0 ENSG00000230216.1 processed_pseudogene HSPB1P2 1 OTTHUMG00000024140.1 pseudo_consens +62592 chrX HAVANA gene 49235467 49250526 2516.0 + 0 ENSG00000101997.12 protein_coding CCDC22 2 OTTHUMG00000024141.2 +62593 chrX HAVANA gene 49250436 49264826 2647.0 - 0 ENSG00000049768.14 protein_coding FOXP3 2 OTTHUMG00000024135.4 +62594 chrX HAVANA gene 49273054 49275768 2715.0 + 0 ENSG00000270012.1 lincRNA AC232271.1 2 OTTHUMG00000184084.1 overlapping_locus +62595 chrX HAVANA gene 49269843 49301461 4173.0 + 0 ENSG00000049769.12 protein_coding PPP1R3F 2 OTTHUMG00000024139.4 overlapping_locus +62596 chrX HAVANA gene 49303669 49319844 538.0 + 0 ENSG00000215274.5 protein_coding GAGE10 2 OTTHUMG00000024136.2 +62597 chrX HAVANA gene 49322057 49329384 541.0 + 0 ENSG00000224659.2 protein_coding GAGE12J 2 OTTHUMG00000024137.2 +62598 chrX HAVANA gene 49331616 49338952 530.0 + 0 ENSG00000274274.1 protein_coding GAGE13 2 OTTHUMG00000024138.5 +62599 chrX HAVANA gene 49341192 49345922 403.0 + 0 ENSG00000275113.1 protein_coding GAGE2E 2 OTTHUMG00000067394.4 +62600 chrX HAVANA gene 49529869 49529985 117.0 + 0 ENSG00000236737.1 protein_coding GAGE12B 2 OTTHUMG00000024142.3 +62601 chrX HAVANA gene 49532211 49539538 527.0 + 0 ENSG00000237671.3 protein_coding GAGE12C 2 OTTHUMG00000024144.3 +62602 chrX HAVANA gene 49541767 49549094 527.0 + 0 ENSG00000227488.2 protein_coding GAGE12D 2 OTTHUMG00000024145.3 +62603 chrX HAVANA gene 49551333 49558649 520.0 + 0 ENSG00000216649.3 protein_coding GAGE12E 2 OTTHUMG00000024146.3 +62604 chrX HAVANA gene 49551278 49568218 659.0 + 0 ENSG00000236362.8 protein_coding GAGE12F 2 OTTHUMG00000024147.3 +62605 chrX HAVANA gene 49570434 49577754 527.0 + 0 ENSG00000215269.5 protein_coding GAGE12G 2 OTTHUMG00000024148.3 +62606 chrX HAVANA gene 49579983 49587301 527.0 + 0 ENSG00000224902.5 protein_coding GAGE12H 2 OTTHUMG00000024149.3 +62607 chrX HAVANA gene 49589529 49596827 528.0 + 0 ENSG00000189064.8 protein_coding GAGE2A 2 OTTHUMG00000024143.3 +62608 chrX HAVANA gene 49589496 49608536 3237.0 + 0 ENSG00000205777.17 protein_coding GAGE1 2 OTTHUMG00000024150.5 +62609 chrX HAVANA gene 49632500 49633349 850.0 - 0 ENSG00000213856.3 processed_pseudogene VDAC1P2 1 OTTHUMG00000024151.3 pseudo_consens +62610 chrX HAVANA gene 49664844 49668680 3837.0 - 0 ENSG00000227391.1 processed_pseudogene SALL1P1 2 OTTHUMG00000024152.2 +62611 chrX HAVANA gene 49687450 49695993 665.0 - 0 ENSG00000068985.4 protein_coding PAGE1 2 OTTHUMG00000033224.1 +62612 chrX HAVANA gene 49829260 49833973 1950.0 + 0 ENSG00000101951.16 protein_coding PAGE4 2 OTTHUMG00000024155.1 +62613 chrX HAVANA gene 49876724 49879241 2175.0 - 0 ENSG00000234390.4 lincRNA USP27X-AS1 2 OTTHUMG00000024154.2 +62614 chrX HAVANA gene 49879948 49882565 2618.0 + 0 ENSG00000273820.1 protein_coding USP27X 2 OTTHUMG00000189037.1 retrogene +62615 chrX HAVANA gene 49911620 49912362 743.0 - 0 ENSG00000220132.1 processed_pseudogene AC236430.1 1 OTTHUMG00000048045.1 pseudo_consens +62616 chrX ENSEMBL gene 49945336 49945442 107.0 - 0 ENSG00000201341.1 snRNA RNU6-421P 3 +62617 chrX ENSEMBL gene 50003148 50003238 91.0 + 0 ENSG00000207758.1 miRNA MIR532 3 +62618 chrX ENSEMBL gene 50003503 50003588 86.0 + 0 ENSG00000207768.3 miRNA MIR188 3 +62619 chrX ENSEMBL gene 50008431 50008514 84.0 + 0 ENSG00000207785.1 miRNA MIR500A 3 +62620 chrX ENSEMBL gene 50008964 50009028 65.0 + 0 ENSG00000208015.1 miRNA MIR362 3 +62621 chrX ENSEMBL gene 50009722 50009805 84.0 + 0 ENSG00000211538.1 miRNA MIR501 3 +62622 chrX ENSEMBL gene 50010672 50010750 79.0 + 0 ENSG00000239057.2 miRNA MIR500B 3 +62623 chrX ENSEMBL gene 50013241 50013337 97.0 + 0 ENSG00000207970.3 miRNA MIR660 3 +62624 chrX ENSEMBL gene 50014598 50014683 86.0 + 0 ENSG00000272080.1 miRNA MIR502 3 +62625 chrX HAVANA gene 49922615 50099235 10619.0 + 0 ENSG00000171365.16 protein_coding CLCN5 2 OTTHUMG00000021514.6 ncRNA_host +62626 chrX HAVANA gene 50156159 50156371 213.0 + 0 ENSG00000181977.3 processed_pseudogene PYY3 1 OTTHUMG00000021515.2 pseudo_consens +62627 chrX ENSEMBL gene 50171197 50171297 101.0 - 0 ENSG00000202495.1 misc_RNA RF00019 3 +62628 chrX HAVANA gene 50190768 50201013 3042.0 - 0 ENSG00000147081.14 protein_coding AKAP4 2 OTTHUMG00000021517.2 +62629 chrX HAVANA gene 50202713 50351910 5408.0 + 0 ENSG00000147082.17 protein_coding CCNB3 2 OTTHUMG00000021519.4 +62630 chrX HAVANA gene 50365409 50470738 7407.0 - 0 ENSG00000274588.1 protein_coding DGKK 2 OTTHUMG00000021520.4 +62631 chrX ENSEMBL gene 50649641 50649740 100.0 + 0 ENSG00000222303.1 snRNA RNU6-935P 3 +62632 chrX HAVANA gene 50591647 50814302 10333.0 - 0 ENSG00000158352.15 protein_coding SHROOM4 2 OTTHUMG00000021521.5 +62633 chrX HAVANA gene 50905438 50905866 429.0 + 0 ENSG00000226881.5 processed_pseudogene H3F3AP5 1 OTTHUMG00000021523.1 pseudo_consens +62634 chrX HAVANA gene 50910784 50916607 1179.0 + 0 ENSG00000130385.5 protein_coding BMP15 2 OTTHUMG00000021525.2 +62635 chrX HAVANA gene 50931114 50931548 435.0 - 0 ENSG00000238190.1 processed_pseudogene HMGB1P15 1 OTTHUMG00000021524.1 pseudo_consens +62636 chrX HAVANA gene 51030422 51031357 936.0 - 0 ENSG00000227493.1 unprocessed_pseudogene AC239367.1 1 OTTHUMG00000021526.1 pseudo_consens +62637 chrX HAVANA gene 51082818 51091228 705.0 + 0 ENSG00000230926.1 unprocessed_pseudogene AC239367.2 2 OTTHUMG00000021527.1 +62638 chrX HAVANA gene 51162864 51163677 814.0 + 0 ENSG00000237926.1 unprocessed_pseudogene AC239367.3 1 OTTHUMG00000021528.1 pseudo_consens +62639 chrX HAVANA gene 51095844 51171400 730.0 - 0 ENSG00000230317.1 lincRNA LINC01284 2 OTTHUMG00000021529.1 +62640 chrX HAVANA gene 51332231 51337525 2054.0 + 0 ENSG00000122824.10 protein_coding NUDT10 2 OTTHUMG00000021530.1 retrogene +62641 chrX HAVANA gene 51356944 51396462 451.0 - 0 ENSG00000229151.1 lincRNA AC233976.1 2 OTTHUMG00000021533.1 +62642 chrX HAVANA gene 51406915 51408843 1929.0 + 0 ENSG00000187690.3 protein_coding CXorf67 2 OTTHUMG00000187481.1 overlapping_locus +62643 chrX HAVANA gene 51396511 51465661 841.0 + 0 ENSG00000226530.1 lincRNA AL158055.1 1 OTTHUMG00000021532.1 overlapping_locus +62644 chrX HAVANA gene 51490011 51496596 2385.0 - 0 ENSG00000196368.4 protein_coding NUDT11 2 OTTHUMG00000021531.1 retrogene +62645 chrX HAVANA gene 51502090 51511005 460.0 - 0 ENSG00000234766.1 lincRNA LINC01496 2 OTTHUMG00000021535.1 +62646 chrX HAVANA gene 51617024 51618968 1945.0 - 0 ENSG00000224109.3 protein_coding CENPVL3 2 OTTHUMG00000021534.4 retrogene +62647 chrX HAVANA gene 51681212 51682831 1620.0 - 0 ENSG00000283093.1 protein_coding CENPVL2 2 OTTHUMG00000191517.2 retrogene +62648 chrX HAVANA gene 51710512 51712131 1620.0 + 0 ENSG00000223591.5 protein_coding CENPVL1 2 OTTHUMG00000021539.3 retrogene +62649 chrX HAVANA gene 51743431 51746232 2802.0 + 0 ENSG00000189369.8 protein_coding GSPT2 2 OTTHUMG00000021538.1 retrogene +62650 chrX HAVANA gene 51856968 51858066 1099.0 + 0 ENSG00000236576.1 processed_pseudogene AC241520.1 2 OTTHUMG00000021537.1 overlapping_locus +62651 chrX ENSEMBL gene 51870706 51870809 104.0 - 0 ENSG00000252377.1 snRNA RNU6-504P 3 +62652 chrX HAVANA gene 51803007 51902357 6016.0 + 0 ENSG00000179222.17 protein_coding MAGED1 2 OTTHUMG00000021540.3 overlapping_locus +62653 chrX HAVANA gene 51903338 51903850 154.0 - 0 ENSG00000228827.1 unprocessed_pseudogene AL929410.1 2 OTTHUMG00000021541.1 +62654 chrX HAVANA gene 51921864 51922499 636.0 - 0 ENSG00000232951.1 processed_pseudogene IPO7P1 1 OTTHUMG00000021542.1 pseudo_consens +62655 chrX HAVANA gene 51923552 51923740 189.0 + 0 ENSG00000237528.1 processed_pseudogene AL929410.2 1 OTTHUMG00000021543.1 pseudo_consens +62656 chrX HAVANA gene 51979223 51980012 735.0 - 0 ENSG00000232562.1 processed_pseudogene TPMTP3 1 OTTHUMG00000021544.1 pseudo_consens +62657 chrX HAVANA gene 52050860 52054255 2369.0 - 0 ENSG00000182776.4 lincRNA AC239585.1 2 OTTHUMG00000021545.1 +62658 chrX HAVANA gene 52053176 52055684 760.0 + 0 ENSG00000279750.3 lincRNA AC239585.2 2 OTTHUMG00000189366.1 +62659 chrX ENSEMBL gene 52063347 52063474 128.0 - 0 ENSG00000221705.1 snoRNA SNORA11E 3 +62660 chrX HAVANA gene 52061827 52069248 4947.0 - 0 ENSG00000187243.16 protein_coding MAGED4B 2 OTTHUMG00000021546.5 ncRNA_host +62661 chrX ENSEMBL gene 52190621 52190748 128.0 + 0 ENSG00000221475.1 snoRNA SNORA11D 3 +62662 chrX HAVANA gene 52184823 52192268 4809.0 + 0 ENSG00000154545.16 protein_coding MAGED4 2 OTTHUMG00000042235.2 ncRNA_host +62663 chrX HAVANA gene 52199840 52203235 2369.0 + 0 ENSG00000179028.4 lincRNA AC245177.1 2 OTTHUMG00000021548.1 +62664 chrX HAVANA gene 52326166 52326762 597.0 + 0 ENSG00000276474.1 processed_pseudogene AC231759.1 2 OTTHUMG00000188018.1 +62665 chrX ENSEMBL gene 52336557 52336642 86.0 - 0 ENSG00000275335.1 miRNA MIR8088 3 +62666 chrX HAVANA gene 52369030 52375680 618.0 + 0 ENSG00000155622.6 protein_coding XAGE2 2 OTTHUMG00000021549.1 +62667 chrX HAVANA gene 52382053 52385614 312.0 + 0 ENSG00000225957.1 unprocessed_pseudogene AC231532.1 2 OTTHUMG00000021550.2 +62668 chrX HAVANA gene 52409772 52410432 180.0 - 0 ENSG00000276897.1 unprocessed_pseudogene AC231532.2 2 OTTHUMG00000188609.1 +62669 chrX HAVANA gene 52448587 52451138 304.0 - 0 ENSG00000250084.1 unprocessed_pseudogene BX510359.5 2 OTTHUMG00000021553.1 +62670 chrX HAVANA gene 52422069 52459066 237.0 + 0 ENSG00000224556.2 unprocessed_pseudogene BX510359.1 2 OTTHUMG00000021554.2 +62671 chrX HAVANA gene 52480836 52481131 296.0 + 0 ENSG00000278358.1 processed_pseudogene BX510359.8 2 OTTHUMG00000188019.1 +62672 chrX HAVANA gene 52481515 52483950 630.0 + 0 ENSG00000278160.1 unprocessed_pseudogene BX510359.7 2 OTTHUMG00000188020.1 +62673 chrX HAVANA gene 52485046 52485912 867.0 - 0 ENSG00000275643.1 processed_pseudogene RBM22P6 2 OTTHUMG00000188635.1 +62674 chrX HAVANA gene 52495676 52500812 1071.0 + 0 ENSG00000204379.10 protein_coding XAGE1A 2 OTTHUMG00000021557.3 +62675 chrX HAVANA gene 52509903 52510182 280.0 + 0 ENSG00000223395.2 processed_pseudogene RBM22P7 2 OTTHUMG00000021556.2 +62676 chrX HAVANA gene 52512077 52520803 1414.0 - 0 ENSG00000204382.11 protein_coding XAGE1B 2 OTTHUMG00000163577.2 +62677 chrX HAVANA gene 52531709 52532051 343.0 - 0 ENSG00000277289.1 processed_pseudogene BX510359.6 2 OTTHUMG00000188022.1 +62678 chrX HAVANA gene 52545151 52547695 305.0 + 0 ENSG00000227058.1 unprocessed_pseudogene BX510359.2 2 OTTHUMG00000021571.2 +62679 chrX HAVANA gene 52561769 52562301 193.0 - 0 ENSG00000231593.1 unprocessed_pseudogene BX510359.4 2 OTTHUMG00000150409.1 +62680 chrX HAVANA gene 52583989 52586312 306.0 + 0 ENSG00000228771.1 unprocessed_pseudogene BX510359.3 2 OTTHUMG00000021580.2 +62681 chrX HAVANA gene 52598494 52603289 245.0 + 0 ENSG00000185319.5 unprocessed_pseudogene SSXP4 2 OTTHUMG00000021581.1 +62682 chrX HAVANA gene 52606535 52611758 473.0 - 0 ENSG00000197185.7 unprocessed_pseudogene SSXP1 2 OTTHUMG00000021582.1 +62683 chrX HAVANA gene 52612656 52613523 545.0 + 0 ENSG00000234792.1 processed_pseudogene AL450023.2 1 OTTHUMG00000021583.2 pseudo_consens +62684 chrX HAVANA gene 52624998 52632895 579.0 + 0 ENSG00000157965.11 unprocessed_pseudogene SSX8P 2 OTTHUMG00000021573.4 +62685 chrX HAVANA gene 52644090 52654900 1311.0 - 0 ENSG00000187754.8 protein_coding SSX7 2 OTTHUMG00000021572.1 +62686 chrX HAVANA gene 52655207 52657254 751.0 + 0 ENSG00000228354.1 processed_pseudogene AL450023.1 1 OTTHUMG00000021584.1 pseudo_consens +62687 chrX ENSEMBL gene 52665231 52665347 117.0 + 0 ENSG00000222608.1 rRNA_pseudogene RNA5SP504 3 +62688 chrX HAVANA gene 52672718 52677051 287.0 + 0 ENSG00000225508.1 unprocessed_pseudogene SSXP5 2 OTTHUMG00000021574.2 +62689 chrX HAVANA gene 52687363 52687633 271.0 - 0 ENSG00000237275.1 processed_pseudogene AL450023.3 1 OTTHUMG00000021575.1 pseudo_consens +62690 chrX HAVANA gene 52696896 52707189 1536.0 - 0 ENSG00000241476.8 protein_coding SSX2 2 OTTHUMG00000022697.1 +62691 chrX HAVANA gene 52707602 52709933 759.0 + 0 ENSG00000223958.1 processed_pseudogene AC244505.2 1 OTTHUMG00000021576.1 pseudo_consens +62692 chrX HAVANA gene 52722338 52722524 187.0 + 0 ENSG00000225397.1 processed_pseudogene AC244505.3 1 OTTHUMG00000021577.1 pseudo_consens +62693 chrX HAVANA gene 52735901 52736107 207.0 - 0 ENSG00000229826.2 processed_pseudogene AC244505.5 1 OTTHUMG00000021578.2 pseudo_consens +62694 chrX HAVANA gene 52770809 52771080 272.0 + 0 ENSG00000269281.2 processed_pseudogene AC244505.7 1 OTTHUMG00000188636.1 pseudo_consens +62695 chrX HAVANA gene 52781452 52785786 287.0 - 0 ENSG00000226867.1 unprocessed_pseudogene AC244505.4 2 OTTHUMG00000021592.2 +62696 chrX HAVANA gene 52751132 52790305 2255.0 + 0 ENSG00000268447.5 protein_coding SSX2B 2 OTTHUMG00000021593.3 +62697 chrX HAVANA gene 52796144 52798101 1316.0 - 0 ENSG00000204363.4 protein_coding SPANXN5 2 OTTHUMG00000021590.3 +62698 chrX HAVANA gene 52801400 52801529 130.0 - 0 ENSG00000229885.1 processed_pseudogene AC244505.6 2 OTTHUMG00000021586.2 +62699 chrX HAVANA gene 52812204 52818301 1115.0 + 0 ENSG00000171405.12 protein_coding XAGE5 2 OTTHUMG00000021589.3 +62700 chrX HAVANA gene 52824269 52829267 307.0 - 0 ENSG00000196395.7 unprocessed_pseudogene AC244505.1 2 OTTHUMG00000021585.2 +62701 chrX HAVANA gene 52832704 52833899 1196.0 - 0 ENSG00000224781.1 processed_pseudogene EIF4A2P4 1 OTTHUMG00000021588.1 pseudo_consens +62702 chrX HAVANA gene 52862525 52868068 552.0 - 0 ENSG00000171402.14 protein_coding XAGE3 2 OTTHUMG00000021587.2 +62703 chrX HAVANA gene 52891306 52908560 4456.0 + 0 ENSG00000179304.16 protein_coding FAM156B 2 OTTHUMG00000188219.4 +62704 chrX HAVANA gene 52926402 52995472 6608.0 - 0 ENSG00000268350.7 protein_coding FAM156A 2 OTTHUMG00000188220.5 +62705 chrX HAVANA gene 53065053 53065548 496.0 - 0 ENSG00000270497.1 processed_pseudogene BX322635.1 1 OTTHUMG00000185040.1 pseudo_consens +62706 chrX HAVANA gene 53049091 53080615 4608.0 + 0 ENSG00000184194.5 protein_coding GPR173 2 OTTHUMG00000021596.3 +62707 chrX HAVANA gene 53082367 53088540 4948.0 + 0 ENSG00000184205.14 protein_coding TSPYL2 2 OTTHUMG00000021597.4 +62708 chrX HAVANA gene 53093710 53094858 615.0 - 0 ENSG00000234019.1 lincRNA AL591212.1 2 OTTHUMG00000021599.1 +62709 chrX HAVANA gene 53113018 53113274 257.0 - 0 ENSG00000235224.1 processed_pseudogene AL591212.2 1 OTTHUMG00000021598.1 pseudo_consens +62710 chrX HAVANA gene 53142832 53143913 1082.0 - 0 ENSG00000231340.1 processed_pseudogene ACTG1P10 1 OTTHUMG00000021601.2 pseudo_consens +62711 chrX HAVANA gene 53164391 53164557 167.0 - 0 ENSG00000227329.2 processed_pseudogene AL139396.1 1 OTTHUMG00000021602.2 pseudo_consens +62712 chrX HAVANA gene 53094145 53170914 9927.0 + 0 ENSG00000232593.7 protein_coding KANTR 2 OTTHUMG00000021603.3 +62713 chrX ENSEMBL gene 53195411 53195488 78.0 - 0 ENSG00000276575.1 miRNA MIR6895 3 +62714 chrX ENSEMBL gene 53198889 53198945 57.0 - 0 ENSG00000277474.1 miRNA MIR6894 3 +62715 chrX HAVANA gene 53212408 53214679 755.0 - 0 ENSG00000235262.1 sense_intronic KDM5C-IT1 2 OTTHUMG00000021604.1 overlapping_locus +62716 chrX HAVANA gene 53191321 53225422 8727.0 - 0 ENSG00000126012.11 protein_coding KDM5C 2 OTTHUMG00000021606.2 ncRNA_host,overlapping_locus +62717 chrX HAVANA gene 53225828 53321350 13115.0 - 0 ENSG00000124313.14 protein_coding IQSEC2 2 OTTHUMG00000021608.8 +62718 chrX HAVANA gene 53322990 53323822 833.0 + 0 ENSG00000226299.2 processed_pseudogene RPSAP62 1 OTTHUMG00000021611.2 pseudo_consens +62719 chrX ENSEMBL gene 53324562 53324674 113.0 + 0 ENSG00000207408.1 misc_RNA RF00019 3 +62720 chrX HAVANA gene 53337783 53337973 180.0 - 0 ENSG00000236571.1 processed_pseudogene AC245102.2 1 OTTHUMG00000021610.1 pseudo_consens +62721 chrX HAVANA gene 53340986 53341505 520.0 + 0 ENSG00000234413.1 processed_pseudogene AC245102.1 1 OTTHUMG00000021609.1 pseudo_consens +62722 chrX ENSEMBL gene 53405673 53405765 93.0 - 0 ENSG00000278204.1 miRNA MIR6857 3 +62723 chrX HAVANA gene 53374149 53422728 10484.0 - 0 ENSG00000072501.17 protein_coding SMC1A 2 OTTHUMG00000021614.6 ncRNA_host +62724 chrX HAVANA gene 53422690 53431120 2993.0 + 0 ENSG00000158423.16 protein_coding RIBC1 2 OTTHUMG00000021615.4 +62725 chrX HAVANA gene 53432722 53433032 218.0 - 0 ENSG00000233250.1 antisense AC233728.1 2 OTTHUMG00000021616.1 overlapping_locus +62726 chrX HAVANA gene 53431258 53434373 1115.0 - 0 ENSG00000072506.12 protein_coding HSD17B10 2 OTTHUMG00000021612.1 overlapping_locus +62727 chrX HAVANA gene 53456273 53457029 757.0 - 0 ENSG00000235416.1 processed_pseudogene AC233728.2 1 OTTHUMG00000021613.1 pseudo_consens +62728 chrX ENSEMBL gene 53462209 53462310 102.0 + 0 ENSG00000199422.1 misc_RNA VTRNA3-1P 3 +62729 chrX ENSEMBL gene 53556223 53556341 119.0 - 0 ENSG00000271886.1 miRNA MIR98 3 +62730 chrX ENSEMBL gene 53557192 53557274 83.0 - 0 ENSG00000208012.1 miRNA MIRLET7F2 3 +62731 chrX HAVANA gene 53532096 53686729 17380.0 - 0 ENSG00000086758.15 protein_coding HUWE1 2 OTTHUMG00000021617.8 ncRNA_host +62732 chrX HAVANA gene 53759026 53759204 179.0 + 0 ENSG00000224735.1 processed_pseudogene BX323845.1 2 OTTHUMG00000021618.1 +62733 chrX HAVANA gene 53768986 53769219 234.0 - 0 ENSG00000226110.2 processed_pseudogene BX323845.2 1 OTTHUMG00000021619.2 pseudo_consens +62734 chrX HAVANA gene 53807776 53808623 527.0 + 0 ENSG00000229037.2 processed_pseudogene BX323845.3 1 OTTHUMG00000021620.2 pseudo_consens +62735 chrX HAVANA gene 53825887 53826309 423.0 + 0 ENSG00000235916.1 processed_pseudogene AC233279.1 1 OTTHUMG00000021621.1 pseudo_consens +62736 chrX ENSEMBL gene 53909054 53909161 108.0 + 0 ENSG00000201618.1 rRNA_pseudogene RNA5SP505 3 +62737 chrX HAVANA gene 53936676 54048958 9015.0 - 0 ENSG00000172943.19 protein_coding PHF8 1 OTTHUMG00000021622.3 +62738 chrX HAVANA gene 54147372 54147659 288.0 + 0 ENSG00000224949.2 processed_pseudogene AL589872.1 1 OTTHUMG00000021623.2 pseudo_consens +62739 chrX HAVANA gene 54068324 54183281 8799.0 - 0 ENSG00000184083.11 protein_coding FAM120C 2 OTTHUMG00000021625.3 +62740 chrX HAVANA gene 54223324 54224062 739.0 + 0 ENSG00000234566.1 processed_pseudogene RPL7AP71 1 OTTHUMG00000021624.1 pseudo_consens +62741 chrX ENSEMBL gene 54343546 54343652 107.0 + 0 ENSG00000207104.1 snRNA RNU6-434P 3 +62742 chrX HAVANA gene 54192823 54358642 11472.0 - 0 ENSG00000196632.10 protein_coding WNK3 2 OTTHUMG00000021626.4 +62743 chrX HAVANA gene 54440401 54445487 1534.0 + 0 ENSG00000158526.7 protein_coding TSR2 2 OTTHUMG00000021628.1 +62744 chrX HAVANA gene 54445454 54496166 4275.0 - 0 ENSG00000102302.7 protein_coding FGD1 2 OTTHUMG00000021627.1 +62745 chrX HAVANA gene 54530211 54561071 2589.0 + 0 ENSG00000130119.15 protein_coding GNL3L 2 OTTHUMG00000021629.1 +62746 chrX HAVANA gene 54671985 54672638 654.0 + 0 ENSG00000215197.4 processed_pseudogene PGAM4P1 1 OTTHUMG00000021630.2 pseudo_consens +62747 chrX HAVANA gene 54748899 54798240 5497.0 - 0 ENSG00000102313.8 protein_coding ITIH6 1 OTTHUMG00000021634.2 +62748 chrX ENSEMBL gene 54814370 54814497 128.0 + 0 ENSG00000221716.1 snoRNA SNORA11 3 +62749 chrX HAVANA gene 54807599 54816012 2940.0 + 0 ENSG00000102316.16 protein_coding MAGED2 2 OTTHUMG00000021638.3 ncRNA_host +62750 chrX HAVANA gene 54842014 54842134 121.0 + 0 ENSG00000275387.1 unprocessed_pseudogene AL049732.1 2 OTTHUMG00000188080.1 +62751 chrX ENSEMBL gene 54927305 54927433 129.0 + 0 ENSG00000221750.1 snoRNA RF00614 3 +62752 chrX HAVANA gene 54920462 54931431 6716.0 + 0 ENSG00000067445.20 protein_coding TRO 1 OTTHUMG00000021640.6 ncRNA_host +62753 chrX HAVANA gene 54932961 54998534 2058.0 - 0 ENSG00000158571.10 protein_coding PFKFB1 2 OTTHUMG00000021643.1 +62754 chrX HAVANA gene 55000357 55009057 3245.0 + 0 ENSG00000169188.4 protein_coding APEX2 2 OTTHUMG00000021642.1 +62755 chrX HAVANA gene 55009055 55031064 2134.0 - 0 ENSG00000158578.20 protein_coding ALAS2 1 OTTHUMG00000021641.10 +62756 chrX HAVANA gene 55044749 55045121 373.0 - 0 ENSG00000278283.1 unprocessed_pseudogene AL020991.1 2 OTTHUMG00000188081.1 +62757 chrX HAVANA gene 55054945 55055838 894.0 - 0 ENSG00000234466.1 processed_pseudogene AL590240.2 1 OTTHUMG00000021644.1 pseudo_consens +62758 chrX HAVANA gene 55075063 55078909 507.0 + 0 ENSG00000238269.8 protein_coding PAGE2B 2 OTTHUMG00000021645.1 +62759 chrX HAVANA gene 55089008 55092842 661.0 + 0 ENSG00000234068.6 protein_coding PAGE2 2 OTTHUMG00000021648.5 +62760 chrX HAVANA gene 55101637 55102026 390.0 - 0 ENSG00000278319.1 unprocessed_pseudogene AL590240.4 2 OTTHUMG00000188084.1 +62761 chrX HAVANA gene 55137930 55142433 943.0 + 0 ENSG00000276929.1 unprocessed_pseudogene AL590240.3 2 OTTHUMG00000188089.1 +62762 chrX HAVANA gene 55143102 55161310 2499.0 - 0 ENSG00000182518.13 protein_coding FAM104B 1 OTTHUMG00000021646.2 +62763 chrX HAVANA gene 55172717 55176026 313.0 + 0 ENSG00000186678.7 unprocessed_pseudogene AL590240.1 2 OTTHUMG00000021649.2 +62764 chrX HAVANA gene 55178207 55178737 531.0 - 0 ENSG00000229760.1 processed_pseudogene MTCO1P52 2 OTTHUMG00000021647.1 +62765 chrX HAVANA gene 55179194 55179999 806.0 - 0 ENSG00000231947.1 processed_pseudogene MTND2P24 2 OTTHUMG00000021653.1 +62766 chrX HAVANA gene 55180377 55181277 901.0 - 0 ENSG00000238047.1 processed_pseudogene MTND1P30 2 OTTHUMG00000021652.1 +62767 chrX HAVANA gene 55181391 55182920 1530.0 - 0 ENSG00000256045.2 protein_coding MTRNR2L10 2 OTTHUMG00000184991.2 +62768 chrX HAVANA gene 55220355 55224108 743.0 + 0 ENSG00000158639.12 protein_coding PAGE5 2 OTTHUMG00000021650.1 +62769 chrX HAVANA gene 55258412 55264846 759.0 - 0 ENSG00000204279.7 protein_coding PAGE3 2 OTTHUMG00000021654.4 +62770 chrX HAVANA gene 55279839 55288785 501.0 + 0 ENSG00000232765.6 transcribed_unprocessed_pseudogene AL158819.1 2 OTTHUMG00000039439.2 overlapping_locus +62771 chrX ENSEMBL gene 55451495 55451582 88.0 - 0 ENSG00000283334.1 miRNA MIR4536-1 3 +62772 chrX ENSEMBL gene 55451495 55451582 88.0 + 0 ENSG00000266328.3 miRNA MIR4536-2 3 +62773 chrX HAVANA gene 55452105 55453566 1462.0 + 0 ENSG00000187601.4 protein_coding MAGEH1 2 OTTHUMG00000021655.1 +62774 chrX HAVANA gene 55484616 55489202 4407.0 - 0 ENSG00000247746.4 protein_coding USP51 2 OTTHUMG00000021656.5 retrogene +62775 chrX HAVANA gene 55520382 55520714 333.0 - 0 ENSG00000277516.1 unprocessed_pseudogene AL590410.1 2 OTTHUMG00000188096.1 +62776 chrX ENSEMBL gene 55582733 55582834 102.0 + 0 ENSG00000200635.1 misc_RNA RF00019 3 +62777 chrX HAVANA gene 55599663 55600106 444.0 - 0 ENSG00000235136.1 processed_pseudogene AL627224.1 1 OTTHUMG00000021658.1 pseudo_consens +62778 chrX HAVANA gene 55623400 55625325 1926.0 + 0 ENSG00000189299.6 protein_coding FOXR2 2 OTTHUMG00000021661.2 retrogene +62779 chrX HAVANA gene 55633031 55635656 307.0 - 0 ENSG00000229594.1 unprocessed_pseudogene AL159987.2 2 OTTHUMG00000021660.2 +62780 chrX HAVANA gene 55654709 55657014 293.0 - 0 ENSG00000169164.7 transcribed_unprocessed_pseudogene AL159987.1 2 OTTHUMG00000021659.4 +62781 chrX HAVANA gene 55717739 55758774 2725.0 + 0 ENSG00000083750.12 protein_coding RRAGB 2 OTTHUMG00000021662.2 +62782 chrX HAVANA gene 55961208 55962482 1275.0 + 0 ENSG00000214745.2 processed_pseudogene AL391419.1 1 OTTHUMG00000021663.1 pseudo_consens,overlapping_locus +62783 chrX HAVANA gene 55908123 56015173 1007.0 + 0 ENSG00000227486.1 lincRNA AL445472.1 2 OTTHUMG00000021664.1 overlapping_locus +62784 chrX HAVANA gene 56242937 56243409 473.0 - 0 ENSG00000234135.2 processed_pseudogene RPL23AP83 1 OTTHUMG00000021665.2 pseudo_consens +62785 chrX HAVANA gene 56232421 56287889 9022.0 + 0 ENSG00000102349.17 protein_coding KLF8 2 OTTHUMG00000021666.3 +62786 chrX HAVANA gene 56563639 56567868 4230.0 + 0 ENSG00000188021.8 protein_coding UBQLN2 2 OTTHUMG00000021669.1 retrogene +62787 chrX HAVANA gene 56618391 56624458 713.0 + 0 ENSG00000230105.1 lincRNA AL354793.1 1 OTTHUMG00000021671.1 +62788 chrX HAVANA gene 56737242 56737577 336.0 - 0 ENSG00000237748.1 processed_pseudogene UQCRBP1 1 OTTHUMG00000021675.2 pseudo_consens +62789 chrX HAVANA gene 56729241 56818380 1707.0 + 0 ENSG00000204272.12 protein_coding NBDY 2 OTTHUMG00000021676.3 +62790 chrX HAVANA gene 56973510 56974796 644.0 + 0 ENSG00000224799.1 antisense AL139397.1 1 OTTHUMG00000021679.1 +62791 chrX HAVANA gene 56818298 56995827 15841.0 - 0 ENSG00000204271.12 protein_coding SPIN3 2 OTTHUMG00000021677.10 retrogene +62792 chrX HAVANA gene 57068914 57069685 772.0 - 0 ENSG00000237708.1 processed_pseudogene AL139397.2 1 OTTHUMG00000021678.1 pseudo_consens +62793 chrX HAVANA gene 57118551 57121546 1477.0 - 0 ENSG00000186787.8 protein_coding SPIN2B 2 OTTHUMG00000021680.3 retrogene +62794 chrX HAVANA gene 57121662 57127243 665.0 + 0 ENSG00000226310.1 antisense AL022157.1 2 OTTHUMG00000021681.1 +62795 chrX HAVANA gene 57134530 57137625 2889.0 - 0 ENSG00000147059.8 protein_coding SPIN2A 2 OTTHUMG00000022705.1 retrogene +62796 chrX HAVANA gene 57229034 57229415 382.0 + 0 ENSG00000231765.1 processed_pseudogene PPP1R11P2 1 OTTHUMG00000021682.1 pseudo_consens +62797 chrX HAVANA gene 57392646 57395409 2764.0 - 0 ENSG00000231831.1 processed_pseudogene MTHFD1P1 1 OTTHUMG00000021683.1 pseudo_consens +62798 chrX HAVANA gene 57286706 57489196 2019.0 + 0 ENSG00000165591.6 protein_coding FAAH2 2 OTTHUMG00000021684.1 +62799 chrX HAVANA gene 57591652 57597545 5894.0 + 0 ENSG00000198455.4 protein_coding ZXDB 2 OTTHUMG00000021685.1 +62800 chrX HAVANA gene 57677067 57680260 3194.0 - 0 ENSG00000215174.2 protein_coding NLRP2B 2 OTTHUMG00000021686.2 +62801 chrX HAVANA gene 57766320 57767292 973.0 + 0 ENSG00000227427.1 processed_pseudogene Z93019.1 1 OTTHUMG00000021687.1 pseudo_consens +62802 chrX HAVANA gene 57906708 57910820 4113.0 - 0 ENSG00000198205.6 protein_coding ZXDA 2 OTTHUMG00000021688.1 +62803 chrX HAVANA gene 57933837 57934803 967.0 - 0 ENSG00000228004.1 processed_pseudogene MYCLP2 1 OTTHUMG00000021689.1 pseudo_consens +62804 chrX HAVANA gene 57984686 57986133 1448.0 + 0 ENSG00000235124.1 processed_pseudogene KRT8P17 1 OTTHUMG00000021690.2 pseudo_consens +62805 chrX HAVANA gene 62779250 62780326 1077.0 + 0 ENSG00000236852.1 processed_pseudogene BX322784.1 1 OTTHUMG00000021691.1 pseudo_consens +62806 chrX HAVANA gene 62842542 62843502 961.0 + 0 ENSG00000235170.1 processed_pseudogene MTND1P31 2 OTTHUMG00000021692.1 +62807 chrX HAVANA gene 62843697 62844306 610.0 + 0 ENSG00000228182.1 processed_pseudogene MTND2P25 2 OTTHUMG00000021693.1 +62808 chrX HAVANA gene 62878811 62884842 2970.0 - 0 ENSG00000234570.1 processed_pseudogene ZFRP1 1 OTTHUMG00000021694.2 pseudo_consens +62809 chrX HAVANA gene 63087071 63088664 1594.0 + 0 ENSG00000277499.1 processed_pseudogene AL359854.1 2 OTTHUMG00000188098.1 +62810 chrX HAVANA gene 63299247 63299673 427.0 - 0 ENSG00000230823.3 processed_pseudogene CBX1P1 1 OTTHUMG00000021695.2 pseudo_consens +62811 chrX HAVANA gene 63347228 63351344 4117.0 - 0 ENSG00000186767.6 protein_coding SPIN4 2 OTTHUMG00000021696.3 overlapping_locus,retrogene +62812 chrX HAVANA gene 63349646 63352178 426.0 + 0 ENSG00000233661.1 antisense SPIN4-AS1 2 OTTHUMG00000021697.1 +62813 chrX HAVANA gene 63343227 63561071 6379.0 - 0 ENSG00000235437.7 processed_transcript LINC01278 2 OTTHUMG00000021699.2 overlapping_locus +62814 chrX HAVANA gene 63670196 63671502 394.0 - 0 ENSG00000231729.1 sense_intronic ARHGEF9-IT1 2 OTTHUMG00000021698.1 overlapping_locus +62815 chrX HAVANA gene 63766875 63767400 526.0 + 0 ENSG00000236813.1 processed_pseudogene BTF3P8 1 OTTHUMG00000021701.1 pseudo_consens +62816 chrX ENSEMBL gene 63786002 63786087 86.0 - 0 ENSG00000222532.1 miRNA MIR1468 3 +62817 chrX HAVANA gene 63634967 63809274 13771.0 - 0 ENSG00000131089.15 protein_coding ARHGEF9 2 OTTHUMG00000021700.11 ncRNA_host,overlapping_locus +62818 chrX HAVANA gene 64044305 64045058 754.0 + 0 ENSG00000232794.1 processed_pseudogene HNRNPDP1 1 OTTHUMG00000021702.1 pseudo_consens +62819 chrX HAVANA gene 64144872 64147052 1771.0 - 0 ENSG00000226010.1 processed_pseudogene AL355852.1 2 OTTHUMG00000039913.1 +62820 chrX HAVANA gene 64185117 64205744 8443.0 - 0 ENSG00000184675.10 protein_coding AMER1 2 OTTHUMG00000021703.3 +62821 chrX ENSEMBL gene 64210691 64210988 298.0 + 0 ENSG00000244006.3 misc_RNA RN7SL799P 3 +62822 chrX HAVANA gene 64224196 64230631 1289.0 - 0 ENSG00000198881.9 protein_coding ASB12 2 OTTHUMG00000021705.2 +62823 chrX HAVANA gene 64305047 64306733 1436.0 - 0 ENSG00000213754.2 processed_pseudogene AL356317.1 1 OTTHUMG00000021704.1 pseudo_consens,overlapping_locus +62824 chrX HAVANA gene 64268081 64395431 2782.0 - 0 ENSG00000102043.15 protein_coding MTMR8 2 OTTHUMG00000021707.2 overlapping_locus +62825 chrX HAVANA gene 64405473 64406136 664.0 + 0 ENSG00000283349.3 transcribed_unitary_pseudogene PFN5P 2 OTTHUMG00000191750.4 +62826 chrX HAVANA gene 64432401 64434145 1745.0 + 0 ENSG00000230889.2 processed_pseudogene SHC1P1 1 OTTHUMG00000021706.2 pseudo_consens +62827 chrX HAVANA gene 64612632 64613262 631.0 - 0 ENSG00000227261.1 processed_pseudogene YWHAZP7 1 OTTHUMG00000021708.1 pseudo_consens +62828 chrX HAVANA gene 64623117 64624573 1457.0 + 0 ENSG00000226502.2 processed_pseudogene KRT8P27 1 OTTHUMG00000021709.2 pseudo_consens +62829 chrX HAVANA gene 64697878 64698547 670.0 - 0 ENSG00000225814.1 processed_pseudogene GRPEL2P2 1 OTTHUMG00000021710.1 pseudo_consens +62830 chrX HAVANA gene 64726748 64727048 301.0 - 0 ENSG00000236982.1 processed_pseudogene BLOC1S2P1 1 OTTHUMG00000021711.1 pseudo_consens +62831 chrX HAVANA gene 64915802 65034713 5173.0 - 0 ENSG00000126970.15 protein_coding ZC4H2 2 OTTHUMG00000021712.1 +62832 chrX HAVANA gene 65185018 65187265 1362.0 - 0 ENSG00000237971.1 processed_pseudogene AL445523.1 1 OTTHUMG00000021714.1 pseudo_consens +62833 chrX HAVANA gene 65270913 65273019 1548.0 + 0 ENSG00000225569.1 processed_pseudogene CCT4P2 1 OTTHUMG00000021713.1 pseudo_consens +62834 chrX HAVANA gene 65327988 65331233 961.0 - 0 ENSG00000231857.1 processed_pseudogene MORF4L1P5 1 OTTHUMG00000021715.1 pseudo_consens +62835 chrX HAVANA gene 65356890 65357547 658.0 - 0 ENSG00000237963.1 processed_pseudogene AL441964.1 1 OTTHUMG00000021716.1 pseudo_consens +62836 chrX HAVANA gene 65408084 65408672 589.0 + 0 ENSG00000228158.2 processed_pseudogene TLE1P1 1 OTTHUMG00000021718.1 pseudo_consens +62837 chrX HAVANA gene 65469087 65470380 968.0 + 0 ENSG00000227534.1 processed_pseudogene Z83841.1 1 OTTHUMG00000021717.1 pseudo_consens,overlapping_locus +62838 chrX HAVANA gene 65366638 65507887 7829.0 + 0 ENSG00000102053.12 protein_coding ZC3H12B 2 OTTHUMG00000021719.5 overlapping_locus +62839 chrX HAVANA gene 65512582 65534775 5589.0 - 0 ENSG00000001497.16 protein_coding LAS1L 2 OTTHUMG00000021720.2 +62840 chrX HAVANA gene 65550898 65552421 1524.0 - 0 ENSG00000227942.1 processed_pseudogene FRMD8P1 1 OTTHUMG00000021721.1 pseudo_consens +62841 chrX HAVANA gene 65588377 65741931 5971.0 + 0 ENSG00000147065.16 protein_coding MSN 2 OTTHUMG00000021723.4 +62842 chrX HAVANA gene 65772741 65773632 892.0 - 0 ENSG00000231809.4 processed_pseudogene NANOGP9 1 OTTHUMG00000021724.4 pseudo_consens +62843 chrX HAVANA gene 65786763 65787169 407.0 + 0 ENSG00000276689.1 processed_pseudogene AL450487.2 1 OTTHUMG00000188099.1 pseudo_consens +62844 chrX HAVANA gene 65794345 65795835 1160.0 + 0 ENSG00000233833.1 processed_pseudogene ETF1P3 1 OTTHUMG00000021725.1 pseudo_consens +62845 chrX HAVANA gene 65821255 65822249 995.0 - 0 ENSG00000230039.1 processed_pseudogene AL450487.1 1 OTTHUMG00000021726.1 pseudo_consens +62846 chrX HAVANA gene 65956289 65957196 908.0 - 0 ENSG00000217835.3 processed_pseudogene AL034397.1 1 OTTHUMG00000021728.1 pseudo_consens +62847 chrX HAVANA gene 65999751 66001071 857.0 + 0 ENSG00000237311.1 antisense AL034397.2 1 OTTHUMG00000021729.2 +62848 chrX ENSEMBL gene 66018870 66018979 110.0 + 0 ENSG00000284567.1 miRNA MIR223 3 +62849 chrX HAVANA gene 66015461 66020422 1815.0 + 0 ENSG00000274536.6 antisense AL034397.3 2 OTTHUMG00000188128.1 ncRNA_host +62850 chrX HAVANA gene 66021738 66040125 2192.0 - 0 ENSG00000155659.14 protein_coding VSIG4 2 OTTHUMG00000021727.3 +62851 chrX HAVANA gene 66055587 66056587 1001.0 - 0 ENSG00000215168.2 processed_pseudogene AL139276.1 1 OTTHUMG00000021730.1 pseudo_consens +62852 chrX HAVANA gene 66074835 66076347 1513.0 - 0 ENSG00000237294.1 processed_pseudogene EIF4BP9 1 OTTHUMG00000021731.1 pseudo_consens +62853 chrX HAVANA gene 66162549 66268867 7113.0 + 0 ENSG00000089472.16 protein_coding HEPH 1 OTTHUMG00000021732.6 +62854 chrX HAVANA gene 66360766 66361776 1011.0 - 0 ENSG00000231356.1 processed_pseudogene AL157698.1 1 OTTHUMG00000021733.1 pseudo_consens +62855 chrX HAVANA gene 66437345 66440668 1188.0 + 0 ENSG00000226820.2 unprocessed_pseudogene AL592049.1 2 OTTHUMG00000021734.1 +62856 chrX HAVANA gene 66497748 66499424 1677.0 + 0 ENSG00000235892.1 processed_pseudogene PKMP2 1 OTTHUMG00000021735.1 pseudo_consens +62857 chrX HAVANA gene 66595637 66639298 3579.0 - 0 ENSG00000131080.14 protein_coding EDA2R 2 OTTHUMG00000021736.2 +62858 chrX ENSEMBL gene 66676258 66676364 107.0 - 0 ENSG00000222667.1 snRNA RNU6-394P 3 +62859 chrX HAVANA gene 67373573 67375520 1948.0 + 0 ENSG00000226280.2 processed_pseudogene AL049641.1 2 OTTHUMG00000021737.2 +62860 chrX HAVANA gene 67533163 67533987 825.0 + 0 ENSG00000233710.1 processed_pseudogene AL049564.1 1 OTTHUMG00000021738.1 pseudo_consens +62861 chrX HAVANA gene 67544032 67730619 12775.0 + 0 ENSG00000169083.16 protein_coding AR 1 OTTHUMG00000021740.4 +62862 chrX HAVANA gene 67791955 67792895 941.0 - 0 ENSG00000234201.1 processed_pseudogene BMI1P1 1 OTTHUMG00000021739.1 pseudo_consens +62863 chrX HAVANA gene 68013470 68014901 1432.0 - 0 ENSG00000260118.1 lincRNA AL157700.1 2 OTTHUMG00000175555.2 +62864 chrX HAVANA gene 68070520 68071767 1248.0 - 0 ENSG00000228328.2 processed_pseudogene AL158201.1 1 OTTHUMG00000021741.2 pseudo_consens,overlapping_locus +62865 chrX ENSEMBL gene 68102068 68102132 65.0 - 0 ENSG00000252145.1 snRNA RNU6-1225P 3 +62866 chrX HAVANA gene 68132868 68133437 570.0 + 0 ENSG00000228125.2 processed_pseudogene AKIRIN1P2 1 OTTHUMG00000021742.2 pseudo_consens +62867 chrX ENSEMBL gene 68361075 68361187 113.0 + 0 ENSG00000206646.1 misc_RNA RF00019 3 +62868 chrX HAVANA gene 68042344 68433913 8224.0 - 0 ENSG00000079482.12 protein_coding OPHN1 2 OTTHUMG00000021744.1 ncRNA_host,overlapping_locus +62869 chrX HAVANA gene 68474710 68476874 1015.0 + 0 ENSG00000225925.1 processed_pseudogene AL672138.1 1 OTTHUMG00000021743.1 pseudo_consens +62870 chrX HAVANA gene 68498323 68537285 8850.0 + 0 ENSG00000181704.11 protein_coding YIPF6 2 OTTHUMG00000021745.2 +62871 chrX ENSEMBL gene 68539443 68539549 107.0 - 0 ENSG00000206747.1 snRNA RNU6-245P 3 +62872 chrX HAVANA gene 68600099 68600473 375.0 + 0 ENSG00000236735.3 processed_pseudogene RPL31P63 1 OTTHUMG00000021746.1 pseudo_consens +62873 chrX HAVANA gene 68645326 68645527 202.0 - 0 ENSG00000234463.1 processed_pseudogene COX6CP12 1 OTTHUMG00000021747.1 pseudo_consens +62874 chrX HAVANA gene 68647666 68725842 5558.0 + 0 ENSG00000130052.13 protein_coding STARD8 2 OTTHUMG00000021748.2 +62875 chrX HAVANA gene 68771322 68772578 1257.0 + 0 ENSG00000232267.1 processed_pseudogene ACTR3P2 1 OTTHUMG00000021749.1 pseudo_consens +62876 chrX HAVANA gene 68783472 68785066 1160.0 + 0 ENSG00000213740.2 processed_pseudogene SERBP1P1 1 OTTHUMG00000021750.1 pseudo_consens +62877 chrX HAVANA gene 68828997 68842147 3314.0 + 0 ENSG00000090776.5 protein_coding EFNB1 2 OTTHUMG00000021751.1 +62878 chrX HAVANA gene 69160851 69165793 3117.0 - 0 ENSG00000181191.11 protein_coding PJA1 1 OTTHUMG00000021753.7 retrogene +62879 chrX HAVANA gene 69174124 69174717 594.0 + 0 ENSG00000172186.7 processed_pseudogene HMGN1P35 1 OTTHUMG00000021752.1 pseudo_consens +62880 chrX HAVANA gene 69179557 69209924 2173.0 + 0 ENSG00000215162.1 lincRNA LINC00269 2 OTTHUMG00000021754.2 +62881 chrX HAVANA gene 69485343 69485652 310.0 - 0 ENSG00000231706.2 processed_pseudogene CYCSP43 1 OTTHUMG00000021755.2 pseudo_consens +62882 chrX HAVANA gene 69505241 69532508 4013.0 + 0 ENSG00000130054.4 protein_coding FAM155B 2 OTTHUMG00000021756.1 +62883 chrX HAVANA gene 69569669 69570357 455.0 - 0 ENSG00000228160.1 lincRNA AL158069.1 2 OTTHUMG00000021757.1 +62884 chrX ENSEMBL gene 69672479 69672597 119.0 + 0 ENSG00000285776.1 rRNA_pseudogene AL158069.2 3 +62885 chrX ENSEMBL gene 69672479 69672597 119.0 + 0 ENSG00000272351.1 rRNA RNA5SP506 3 +62886 chrX ENSEMBL gene 69692956 69693155 200.0 + 0 ENSG00000212434.2 snoRNA RF00012 3 +62887 chrX HAVANA gene 69937166 69938017 852.0 - 0 ENSG00000233229.1 processed_pseudogene CNOT7P1 1 OTTHUMG00000021759.1 pseudo_consens +62888 chrX ENSEMBL gene 70022857 70022923 67.0 + 0 ENSG00000211991.4 miRNA MIR676 3 +62889 chrX HAVANA gene 69616067 70039469 6999.0 + 0 ENSG00000158813.17 protein_coding EDA 2 OTTHUMG00000021764.8 ncRNA_host +62890 chrX HAVANA gene 70040542 70049938 2453.0 - 0 ENSG00000147160.9 protein_coding AWAT2 2 OTTHUMG00000021763.2 +62891 chrX HAVANA gene 70062491 70064179 1689.0 + 0 ENSG00000189401.2 protein_coding OTUD6A 2 OTTHUMG00000159996.1 retrogene +62892 chrX HAVANA gene 70120353 70121474 1122.0 - 0 ENSG00000226579.1 processed_pseudogene MTCYBP31 2 OTTHUMG00000021761.1 +62893 chrX HAVANA gene 70124972 70129071 1343.0 - 0 ENSG00000235382.1 processed_pseudogene MTND4P31 2 OTTHUMG00000021760.1 +62894 chrX HAVANA gene 70148582 70149654 513.0 - 0 ENSG00000220925.2 antisense IGBP1-AS2 2 OTTHUMG00000021762.2 +62895 chrX HAVANA gene 70163842 70165206 542.0 - 0 ENSG00000203588.3 antisense IGBP1-AS1 2 OTTHUMG00000021766.1 +62896 chrX HAVANA gene 70133449 70166324 1862.0 + 0 ENSG00000089289.15 protein_coding IGBP1 2 OTTHUMG00000021767.1 +62897 chrX HAVANA gene 70177483 70205545 1553.0 + 0 ENSG00000184210.5 protein_coding DGAT2L6 2 OTTHUMG00000021774.1 +62898 chrX ENSEMBL gene 70222006 70222314 309.0 - 0 ENSG00000242657.3 misc_RNA RN7SL581P 3 +62899 chrX HAVANA gene 70234655 70240627 1434.0 + 0 ENSG00000204195.3 protein_coding AWAT1 2 OTTHUMG00000021773.3 +62900 chrX ENSEMBL gene 70253042 70253162 121.0 + 0 ENSG00000200473.1 rRNA_pseudogene RNA5SP507 3 +62901 chrX HAVANA gene 70258170 70259764 1595.0 - 0 ENSG00000186912.6 protein_coding P2RY4 2 OTTHUMG00000021769.2 +62902 chrX HAVANA gene 70268305 70281840 1729.0 + 0 ENSG00000120500.17 protein_coding ARR3 2 OTTHUMG00000021768.3 +62903 chrX HAVANA gene 70282093 70285002 1344.0 + 0 ENSG00000147127.8 protein_coding RAB41 2 OTTHUMG00000021772.5 +62904 chrX HAVANA gene 70286595 70290514 1393.0 - 0 ENSG00000120509.10 protein_coding PDZD11 2 OTTHUMG00000021771.1 +62905 chrX HAVANA gene 70361486 70362374 349.0 - 0 ENSG00000231053.1 processed_pseudogene AL357752.1 1 OTTHUMG00000021770.1 pseudo_consens +62906 chrX ENSEMBL gene 70396279 70396375 97.0 + 0 ENSG00000201377.1 misc_RNA RNY4P23 3 +62907 chrX HAVANA gene 70290090 70420832 4533.0 + 0 ENSG00000090889.11 protein_coding KIF4A 2 OTTHUMG00000021775.1 ncRNA_host +62908 chrX HAVANA gene 70423031 70433390 2638.0 + 0 ENSG00000130055.13 protein_coding GDPD2 2 OTTHUMG00000021776.1 +62909 chrX HAVANA gene 70427450 70435350 1529.0 - 0 ENSG00000284391.1 antisense AL139398.1 2 OTTHUMG00000191994.1 +62910 chrX ENSEMBL gene 70450879 70451022 144.0 + 0 ENSG00000200431.1 snRNA RNU4-81P 3 +62911 chrX HAVANA gene 70452958 70455994 482.0 - 0 ENSG00000231651.1 antisense DLG3-AS1 2 OTTHUMG00000021777.1 +62912 chrX HAVANA gene 70444861 70505490 7844.0 + 0 ENSG00000082458.11 protein_coding DLG3 2 OTTHUMG00000021778.3 ncRNA_host +62913 chrX HAVANA gene 70672895 70673515 297.0 - 0 ENSG00000230187.1 processed_pseudogene AL139109.1 1 OTTHUMG00000039969.1 pseudo_consens,overlapping_locus +62914 chrX ENSEMBL gene 70846079 70846295 217.0 - 0 ENSG00000277492.1 snoRNA SNORD3E 3 +62915 chrX ENSEMBL gene 70846080 70846295 216.0 - 0 ENSG00000280704.1 snoRNA SNORD3E 3 +62916 chrX HAVANA gene 70857163 70857502 340.0 + 0 ENSG00000213747.2 processed_pseudogene AL627390.1 1 OTTHUMG00000021779.1 pseudo_consens +62917 chrX HAVANA gene 70528940 70908731 3371.0 - 0 ENSG00000120498.13 protein_coding TEX11 2 OTTHUMG00000021782.2 ncRNA_host,overlapping_locus +62918 chrX HAVANA gene 70925582 70931125 2265.0 - 0 ENSG00000165349.11 protein_coding SLC7A3 2 OTTHUMG00000021780.1 +62919 chrX HAVANA gene 70962964 70963293 330.0 + 0 ENSG00000230629.2 processed_pseudogene RPS23P8 1 OTTHUMG00000021781.2 pseudo_consens +62920 chrX HAVANA gene 71016531 71016905 375.0 - 0 ENSG00000229324.1 processed_pseudogene NUTF2P7 1 OTTHUMG00000021783.1 pseudo_consens +62921 chrX ENSEMBL gene 71020275 71020438 164.0 - 0 ENSG00000212605.1 snRNA RNU1-56P 3 +62922 chrX HAVANA gene 71043214 71045470 1566.0 - 0 ENSG00000227536.1 processed_pseudogene SOCS5P4 1 OTTHUMG00000021784.1 pseudo_consens +62923 chrX HAVANA gene 71056332 71073426 2595.0 - 0 ENSG00000147164.11 protein_coding SNX12 2 OTTHUMG00000021786.2 +62924 chrX HAVANA gene 71096197 71103535 3447.0 + 0 ENSG00000184481.16 protein_coding FOXO4 2 OTTHUMG00000021789.2 +62925 chrX HAVANA gene 71103889 71106788 1128.0 - 0 ENSG00000204165.5 protein_coding CXorf65 2 OTTHUMG00000021785.5 overlapping_locus +62926 chrX HAVANA gene 71103987 71111575 2371.0 - 0 ENSG00000285171.1 protein_coding AL590764.2 2 OTTHUMG00000192518.1 overlapping_locus +62927 chrX HAVANA gene 71107404 71112108 2760.0 - 0 ENSG00000147168.12 protein_coding IL2RG 1 OTTHUMG00000021787.3 overlapping_locus +62928 chrX HAVANA gene 71118556 71142454 7425.0 + 0 ENSG00000184634.15 protein_coding MED12 2 OTTHUMG00000021788.4 +62929 chrX HAVANA gene 71144831 71171201 4006.0 + 0 ENSG00000196338.12 protein_coding NLGN3 2 OTTHUMG00000021790.2 +62930 chrX HAVANA gene 71183559 71198175 726.0 - 0 ENSG00000228427.1 antisense AL590764.1 1 OTTHUMG00000021796.3 +62931 chrX HAVANA gene 71215194 71225516 2479.0 + 0 ENSG00000169562.10 protein_coding GJB1 2 OTTHUMG00000021797.4 +62932 chrX HAVANA gene 71239624 71255146 6916.0 - 0 ENSG00000147130.14 protein_coding ZMYM3 2 OTTHUMG00000021799.1 +62933 chrX HAVANA gene 71283192 71301168 5292.0 + 0 ENSG00000147140.15 protein_coding NONO 2 OTTHUMG00000021798.3 +62934 chrX HAVANA gene 71301734 71305371 2201.0 + 0 ENSG00000147166.10 protein_coding ITGB1BP2 2 OTTHUMG00000021793.1 +62935 chrX HAVANA gene 71314912 71315879 640.0 - 0 ENSG00000224208.1 processed_pseudogene AL590762.3 1 OTTHUMG00000021791.1 pseudo_consens +62936 chrX HAVANA gene 71352418 71352988 571.0 + 0 ENSG00000213706.2 processed_pseudogene AL590762.2 1 OTTHUMG00000021792.1 pseudo_consens +62937 chrX ENSEMBL gene 71368666 71368968 303.0 + 0 ENSG00000275975.1 misc_RNA RF00017 3 +62938 chrX HAVANA gene 71413834 71414086 253.0 - 0 ENSG00000229601.1 processed_pseudogene AL590762.4 1 OTTHUMG00000021794.1 pseudo_consens +62939 chrX HAVANA gene 71420083 71420514 432.0 - 0 ENSG00000213018.2 processed_pseudogene AL590762.1 1 OTTHUMG00000021795.1 pseudo_consens +62940 chrX ENSEMBL gene 71491066 71491167 102.0 - 0 ENSG00000199751.1 misc_RNA RF00019 3 +62941 chrX HAVANA gene 71491682 71492928 1247.0 - 0 ENSG00000243468.5 transcribed_processed_pseudogene INGX 2 OTTHUMG00000024051.3 +62942 chrX HAVANA gene 71527814 71530225 1545.0 - 0 ENSG00000215120.2 processed_pseudogene AL590763.1 2 OTTHUMG00000039977.1 +62943 chrX HAVANA gene 71366239 71532374 10860.0 + 0 ENSG00000147133.15 protein_coding TAF1 1 OTTHUMG00000022723.7 ncRNA_host +62944 chrX HAVANA gene 71533083 71575897 9812.0 + 0 ENSG00000147162.13 protein_coding OGT 1 OTTHUMG00000033316.6 +62945 chrX HAVANA gene 71578411 71613583 3621.0 + 0 ENSG00000147174.11 protein_coding GCNA 2 OTTHUMG00000033327.1 +62946 chrX HAVANA gene 71615916 71618517 1868.0 - 0 ENSG00000186810.7 protein_coding CXCR3 2 OTTHUMG00000033326.2 +62947 chrX HAVANA gene 71662998 71666767 1995.0 - 0 ENSG00000237265.6 transcribed_unprocessed_pseudogene BX276092.7 2 OTTHUMG00000022722.2 +62948 chrX HAVANA gene 71667542 71671524 1791.0 + 0 ENSG00000283599.2 protein_coding BX276092.9 2 OTTHUMG00000191693.2 +62949 chrX HAVANA gene 71691932 71692179 248.0 + 0 ENSG00000230934.1 processed_pseudogene BX276092.4 1 OTTHUMG00000022682.1 pseudo_consens +62950 chrX HAVANA gene 71697196 71706455 4113.0 + 0 ENSG00000281852.1 lincRNA LINC00891 2 OTTHUMG00000189559.1 +62951 chrX HAVANA gene 71714371 71718151 1756.0 - 0 ENSG00000215115.6 protein_coding CXorf49 2 OTTHUMG00000022702.2 +62952 chrX HAVANA gene 71719142 71721278 834.0 + 0 ENSG00000226870.2 transcribed_unprocessed_pseudogene BX276092.2 2 OTTHUMG00000186915.1 +62953 chrX HAVANA gene 71736454 71736703 250.0 - 0 ENSG00000237182.1 processed_pseudogene BX276092.6 1 OTTHUMG00000021800.1 pseudo_consens +62954 chrX HAVANA gene 71744828 71745077 250.0 + 0 ENSG00000237717.1 processed_pseudogene BX276092.8 1 OTTHUMG00000021801.1 pseudo_consens +62955 chrX HAVANA gene 71760764 71763075 1389.0 - 0 ENSG00000234442.4 transcribed_unprocessed_pseudogene BX276092.5 2 OTTHUMG00000186891.3 +62956 chrX HAVANA gene 71763424 71767204 1756.0 + 0 ENSG00000215113.6 protein_coding CXorf49B 2 OTTHUMG00000021804.2 +62957 chrX HAVANA gene 71789386 71789636 251.0 - 0 ENSG00000224617.1 processed_pseudogene BX276092.1 1 OTTHUMG00000021802.1 pseudo_consens +62958 chrX HAVANA gene 71848775 71849004 230.0 + 0 ENSG00000229030.1 processed_pseudogene BX276092.3 1 OTTHUMG00000021803.1 pseudo_consens +62959 chrX HAVANA gene 71869763 71873295 1552.0 - 0 ENSG00000283178.1 unprocessed_pseudogene BX119927.1 2 OTTHUMG00000191694.1 +62960 chrX ENSEMBL gene 71965972 71966074 103.0 - 0 ENSG00000201392.1 snRNA RNU6-1078P 3 +62961 chrX HAVANA gene 72044545 72044892 348.0 + 0 ENSG00000196933.5 processed_pseudogene RPS26P11 1 OTTHUMG00000021806.2 pseudo_consens +62962 chrX HAVANA gene 72127110 72131901 4779.0 - 0 ENSG00000242732.4 protein_coding RTL5 2 OTTHUMG00000021808.2 +62963 chrX HAVANA gene 72159845 72160346 502.0 + 0 ENSG00000225471.5 transcribed_processed_pseudogene BX119917.1 1 OTTHUMG00000021809.2 pseudo_consens,overlapping_locus +62964 chrX HAVANA gene 71910818 72161750 17706.0 + 0 ENSG00000204131.9 protein_coding NHSL2 2 OTTHUMG00000021807.4 overlapping_locus +62965 chrX ENSEMBL gene 72198712 72199050 339.0 + 0 ENSG00000239577.3 misc_RNA RN7SL388P 3 +62966 chrX HAVANA gene 72204657 72239047 4364.0 - 0 ENSG00000186871.6 protein_coding ERCC6L 1 OTTHUMG00000021810.3 retrogene +62967 chrX HAVANA gene 72255679 72277300 2982.0 - 0 ENSG00000198034.10 protein_coding RPS4X 2 OTTHUMG00000021813.3 +62968 chrX ENSEMBL gene 72284945 72285045 101.0 - 0 ENSG00000238926.1 misc_RNA RF00019 3 +62969 chrX HAVANA gene 72181353 72302926 4011.0 + 0 ENSG00000102309.12 protein_coding PIN4 1 OTTHUMG00000021811.3 ncRNA_host +62970 chrX HAVANA gene 72301638 72307187 1760.0 - 0 ENSG00000125931.10 protein_coding CITED1 2 OTTHUMG00000021812.3 overlapping_locus +62971 chrX ENSEMBL gene 72376979 72377169 191.0 - 0 ENSG00000222810.1 snRNA RNU2-68P 3 +62972 chrX HAVANA gene 72301691 72572843 1970.0 - 0 ENSG00000285547.1 protein_coding AL133500.1 2 OTTHUMG00000192629.2 ncRNA_host,overlapping_locus +62973 chrX HAVANA gene 72329516 72573199 22986.0 - 0 ENSG00000147099.20 protein_coding HDAC8 2 OTTHUMG00000021814.16 ncRNA_host,overlapping_locus +62974 chrX HAVANA gene 72660470 72660719 250.0 + 0 ENSG00000225858.1 processed_pseudogene BX295541.1 1 OTTHUMG00000021816.1 pseudo_consens +62975 chrX HAVANA gene 72688950 72712348 598.0 + 0 ENSG00000231944.1 antisense PHKA1-AS1 2 OTTHUMG00000021815.1 +62976 chrX HAVANA gene 72578814 72714319 6350.0 - 0 ENSG00000067177.14 protein_coding PHKA1 2 OTTHUMG00000022696.1 +62977 chrX ENSEMBL gene 72726122 72726337 216.0 - 0 ENSG00000273788.1 snoRNA RF00012 3 +62978 chrX HAVANA gene 72727977 72728821 845.0 - 0 ENSG00000213698.2 processed_pseudogene AC240504.1 1 OTTHUMG00000021817.2 pseudo_consens +62979 chrX ENSEMBL gene 72740706 72740869 164.0 - 0 ENSG00000201271.1 snRNA RNU1-112P 3 +62980 chrX HAVANA gene 72777608 72779097 1490.0 + 0 ENSG00000269911.1 sense_intronic FAM226B 2 OTTHUMG00000184072.1 overlapping_locus +62981 chrX HAVANA gene 72781865 72782660 465.0 - 0 ENSG00000268994.3 protein_coding FAM236B 2 OTTHUMG00000188221.3 +62982 chrX HAVANA gene 72807425 72808210 463.0 - 0 ENSG00000225396.5 protein_coding FAM236D 2 OTTHUMG00000021819.3 +62983 chrX HAVANA gene 72777009 72848802 1913.0 + 0 ENSG00000184911.14 protein_coding DMRTC1B 2 OTTHUMG00000021818.7 overlapping_locus +62984 chrX HAVANA gene 72912615 72913401 463.0 + 0 ENSG00000283594.1 protein_coding FAM236C 2 OTTHUMG00000191677.1 +62985 chrX HAVANA gene 72938163 72938958 465.0 + 0 ENSG00000275520.1 protein_coding FAM236A 2 OTTHUMG00000188527.2 +62986 chrX HAVANA gene 72872025 72943814 1853.0 - 0 ENSG00000269502.5 protein_coding DMRTC1 2 OTTHUMG00000021820.7 +62987 chrX HAVANA gene 72998388 73002856 1167.0 - 0 ENSG00000226725.2 antisense PABPC1L2B-AS1 2 OTTHUMG00000021822.2 +62988 chrX HAVANA gene 73003517 73005713 2197.0 + 0 ENSG00000184388.5 protein_coding PABPC1L2B 2 OTTHUMG00000021823.1 retrogene +62989 chrX HAVANA gene 73077276 73079512 2237.0 - 0 ENSG00000186288.5 protein_coding PABPC1L2A 2 OTTHUMG00000021824.1 retrogene +62990 chrX HAVANA gene 73080167 73084635 1167.0 + 0 ENSG00000231963.1 antisense AL662864.1 2 OTTHUMG00000021825.1 +62991 chrX HAVANA gene 73126037 73128080 2044.0 - 0 ENSG00000204118.2 transcribed_processed_pseudogene NAP1L6 1 OTTHUMG00000021826.2 pseudo_consens,semi_processed +62992 chrX HAVANA gene 73212299 73214848 2550.0 - 0 ENSG00000186462.8 protein_coding NAP1L2 2 OTTHUMG00000021827.1 retrogene +62993 chrX HAVANA gene 73223124 73223558 435.0 + 0 ENSG00000230311.2 processed_pseudogene TOMM20P4 1 OTTHUMG00000021830.2 pseudo_consens +62994 chrX HAVANA gene 73237647 73238709 1063.0 - 0 ENSG00000237014.1 processed_pseudogene AC004074.1 1 OTTHUMG00000021829.1 pseudo_consens +62995 chrX HAVANA gene 73274785 73275515 731.0 + 0 ENSG00000225664.3 processed_pseudogene YWHAZP8 1 OTTHUMG00000021828.2 pseudo_consens +62996 chrX ENSEMBL gene 73397531 73397637 107.0 - 0 ENSG00000207486.1 snRNA RNU6-1044P 3 +62997 chrX HAVANA gene 73447254 73455245 1515.0 + 0 ENSG00000131264.3 protein_coding CDX4 2 OTTHUMG00000021831.2 +62998 chrX HAVANA gene 73474563 73474830 268.0 + 0 ENSG00000233162.1 processed_pseudogene MORF4L1P6 1 OTTHUMG00000021832.1 pseudo_consens +62999 chrX HAVANA gene 73535503 73536241 739.0 + 0 ENSG00000237475.2 processed_pseudogene RPL7P53 1 OTTHUMG00000021834.2 pseudo_consens +63000 chrX HAVANA gene 73524275 73563085 2539.0 - 0 ENSG00000269904.2 transcribed_processed_pseudogene MAP2K4P1 1 OTTHUMG00000021833.1 pseudo_consens +63001 chrX HAVANA gene 73563200 73687102 6939.0 + 0 ENSG00000204116.11 protein_coding CHIC1 2 OTTHUMG00000021835.5 +63002 chrX HAVANA gene 73769248 73770423 1176.0 + 0 ENSG00000230146.1 processed_pseudogene SEPHS1P4 1 OTTHUMG00000021836.1 pseudo_consens +63003 chrX ENSEMBL gene 73821657 73821724 68.0 - 0 ENSG00000274655.1 misc_RNA RF02266 3 +63004 chrX HAVANA gene 73792205 73829231 37027.0 + 0 ENSG00000270641.1 lincRNA TSIX 2 OTTHUMG00000184725.1 +63005 chrX ENSEMBL gene 73831145 73831270 126.0 - 0 ENSG00000277577.1 misc_RNA RF01881 3 +63006 chrX ENSEMBL gene 73850487 73850571 85.0 + 0 ENSG00000278039.1 misc_RNA RF01880 3 +63007 chrX HAVANA gene 73820651 73852723 25264.0 - 0 ENSG00000229807.11 lincRNA XIST 2 OTTHUMG00000021839.7 ncRNA_host +63008 chrX HAVANA gene 73875068 73875635 285.0 + 0 ENSG00000182707.4 processed_pseudogene FXYD6P3 1 OTTHUMG00000021837.2 pseudo_consens +63009 chrX ENSEMBL gene 73944332 73944466 135.0 + 0 ENSG00000274430.1 misc_RNA RF02124 3 +63010 chrX ENSEMBL gene 73944595 73944663 69.0 + 0 ENSG00000276784.1 misc_RNA RF02125 3 +63011 chrX HAVANA gene 73948973 73949558 451.0 + 0 ENSG00000228906.1 lincRNA AL353804.1 2 OTTHUMG00000021838.1 overlapping_locus +63012 chrX HAVANA gene 73958059 73969485 347.0 - 0 ENSG00000271199.1 sense_overlapping AL353804.2 2 OTTHUMG00000184200.1 overlapping_locus +63013 chrX HAVANA gene 74031462 74031820 359.0 + 0 ENSG00000233984.1 processed_pseudogene RPSAP14 1 OTTHUMG00000021841.2 pseudo_consens,overlapping_locus +63014 chrX HAVANA gene 74066083 74066592 510.0 + 0 ENSG00000203397.2 processed_pseudogene AL139400.1 1 OTTHUMG00000021842.1 pseudo_consens,overlapping_locus +63015 chrX HAVANA gene 73944184 74070408 13557.0 + 0 ENSG00000225470.7 lincRNA JPX 2 OTTHUMG00000021840.4 ncRNA_host,overlapping_locus +63016 chrX HAVANA gene 74069276 74070832 1182.0 + 0 ENSG00000234969.1 processed_pseudogene AL627389.1 1 OTTHUMG00000021843.1 pseudo_consens,overlapping_locus +63017 chrX HAVANA gene 74105572 74107958 2387.0 + 0 ENSG00000223650.1 processed_pseudogene UHRF2P1 1 OTTHUMG00000021844.1 pseudo_consens +63018 chrX HAVANA gene 74122134 74122725 592.0 - 0 ENSG00000280375.1 TEC AL359740.1 2 OTTHUMG00000184202.1 overlapping_locus +63019 chrX HAVANA gene 74121012 74131923 1950.0 + 0 ENSG00000232928.2 processed_pseudogene DDX3P1 1 OTTHUMG00000021845.2 pseudo_consens +63020 chrX HAVANA gene 74133004 74133114 111.0 - 0 ENSG00000230986.1 processed_pseudogene DDX3P2 2 OTTHUMG00000040019.1 overlapping_locus +63021 chrX HAVANA gene 74161062 74162528 1467.0 - 0 ENSG00000224430.2 processed_pseudogene MKRN5P 2 OTTHUMG00000021846.2 overlapping_locus +63022 chrX HAVANA gene 74173890 74174066 177.0 + 0 ENSG00000231549.1 processed_pseudogene ATP5MDP1 1 OTTHUMG00000021847.2 pseudo_consens +63023 chrX HAVANA gene 74185929 74187153 1225.0 + 0 ENSG00000204113.6 processed_pseudogene BMP2KL 2 OTTHUMG00000021848.3 +63024 chrX HAVANA gene 74202834 74204595 1762.0 + 0 ENSG00000228492.2 processed_pseudogene RAB11FIP1P1 1 OTTHUMG00000021849.2 pseudo_consens +63025 chrX HAVANA gene 74209976 74213660 3685.0 - 0 ENSG00000271533.1 sense_intronic Z83843.1 2 OTTHUMG00000184205.1 overlapping_locus +63026 chrX ENSEMBL gene 74218377 74218461 85.0 - 0 ENSG00000202566.4 miRNA MIR421 3 +63027 chrX ENSEMBL gene 74218549 74218618 70.0 + 0 ENSG00000283534.1 miRNA MIR374C 3 +63028 chrX ENSEMBL gene 74218547 74218618 72.0 - 0 ENSG00000212027.3 miRNA MIR374B 3 +63029 chrX ENSEMBL gene 74242608 74242908 301.0 - 0 ENSG00000265727.2 misc_RNA RN7SL648P 3 +63030 chrX ENSEMBL gene 74274341 74274411 71.0 + 0 ENSG00000278421.1 misc_RNA RF02119 3 +63031 chrX ENSEMBL gene 74280402 74280495 94.0 + 0 ENSG00000273974.1 misc_RNA RF02120 3 +63032 chrX ENSEMBL gene 74280936 74281082 147.0 + 0 ENSG00000275254.1 misc_RNA RF02121 3 +63033 chrX ENSEMBL gene 74281703 74281849 147.0 + 0 ENSG00000275625.1 misc_RNA RF02123 3 +63034 chrX ENSEMBL gene 74287104 74287209 106.0 - 0 ENSG00000207820.1 miRNA MIR545 3 +63035 chrX ENSEMBL gene 74287286 74287357 72.0 - 0 ENSG00000199168.3 miRNA MIR374A 3 +63036 chrX ENSEMBL gene 74293357 74293574 218.0 + 0 ENSG00000277922.1 misc_RNA RF02122 3 +63037 chrX HAVANA gene 73946555 74293574 28271.0 - 0 ENSG00000230590.9 lincRNA FTX 2 OTTHUMG00000021850.4 ncRNA_host,overlapping_locus +63038 chrX HAVANA gene 74304190 74305031 842.0 + 0 ENSG00000187969.5 protein_coding ZCCHC13 2 OTTHUMG00000021851.1 retrogene +63039 chrX HAVANA gene 74342713 74342860 148.0 - 0 ENSG00000226515.1 processed_pseudogene AC004386.2 1 OTTHUMG00000021852.2 pseudo_consens +63040 chrX HAVANA gene 74376125 74376885 761.0 - 0 ENSG00000213269.2 processed_pseudogene AC004386.1 1 OTTHUMG00000021853.1 pseudo_consens +63041 chrX ENSEMBL gene 74390692 74390989 298.0 + 0 ENSG00000239745.3 misc_RNA RN7SL790P 3 +63042 chrX HAVANA gene 74396871 74399550 2203.0 - 0 ENSG00000230665.3 processed_pseudogene THAP12P1 1 OTTHUMG00000021854.2 pseudo_consens +63043 chrX HAVANA gene 74409518 74410100 583.0 + 0 ENSG00000213695.3 processed_pseudogene RPS7P14 1 OTTHUMG00000021855.1 pseudo_consens +63044 chrX HAVANA gene 74473017 74473953 937.0 - 0 ENSG00000231206.2 processed_pseudogene HNRNPA1P25 1 OTTHUMG00000021856.2 pseudo_consens +63045 chrX HAVANA gene 74421461 74533917 4324.0 + 0 ENSG00000147100.10 protein_coding SLC16A2 1 OTTHUMG00000021857.6 +63046 chrX HAVANA gene 74583088 74583546 459.0 - 0 ENSG00000230673.3 processed_pseudogene PABPC1P3 1 OTTHUMG00000021858.1 pseudo_consens +63047 chrX HAVANA gene 74585217 74614617 8379.0 - 0 ENSG00000131263.12 protein_coding RLIM 2 OTTHUMG00000021859.1 +63048 chrX ENSEMBL gene 74680053 74680159 107.0 + 0 ENSG00000199885.1 snRNA RNU6-330P 3 +63049 chrX HAVANA gene 74769639 74769798 160.0 + 0 ENSG00000271589.1 processed_pseudogene AL139395.1 1 OTTHUMG00000185043.1 pseudo_consens +63050 chrX HAVANA gene 74732856 74925485 11869.0 - 0 ENSG00000050030.14 protein_coding NEXMIF 2 OTTHUMG00000021860.3 +63051 chrX HAVANA gene 75051554 75156732 4671.0 - 0 ENSG00000131269.16 protein_coding ABCB7 1 OTTHUMG00000021862.8 +63052 chrX HAVANA gene 75201491 75201790 300.0 + 0 ENSG00000229661.1 processed_pseudogene BUD31P2 1 OTTHUMG00000021861.1 pseudo_consens +63053 chrX ENSEMBL gene 75202703 75202809 107.0 + 0 ENSG00000199601.1 snRNA RNU6-562P 3 +63054 chrX HAVANA gene 75274085 75304600 2825.0 + 0 ENSG00000094841.13 protein_coding UPRT 2 OTTHUMG00000021864.7 +63055 chrX HAVANA gene 75326772 75327999 1228.0 - 0 ENSG00000232186.1 processed_pseudogene AL137013.1 2 OTTHUMG00000021863.1 +63056 chrX HAVANA gene 75384346 75384828 483.0 + 0 ENSG00000233254.1 processed_pseudogene RPL21P134 1 OTTHUMG00000021865.1 pseudo_consens +63057 chrX HAVANA gene 75368427 75523502 6820.0 - 0 ENSG00000102383.13 protein_coding ZDHHC15 2 OTTHUMG00000021866.1 +63058 chrX HAVANA gene 75537547 75538702 517.0 - 0 ENSG00000237089.2 processed_pseudogene PCNPP4 1 OTTHUMG00000021867.2 pseudo_consens +63059 chrX HAVANA gene 75582676 75585506 2703.0 + 0 ENSG00000224775.2 unprocessed_pseudogene BRAFP1 1 OTTHUMG00000021868.2 pseudo_consens +63060 chrX HAVANA gene 75740831 75746911 6081.0 - 0 ENSG00000215105.4 processed_pseudogene TTC3P1 1 OTTHUMG00000021869.1 pseudo_consens +63061 chrX HAVANA gene 75782988 75785236 2249.0 - 0 ENSG00000186675.6 protein_coding MAGEE2 2 OTTHUMG00000021870.1 retrogene +63062 chrX HAVANA gene 75884546 75885136 591.0 + 0 ENSG00000233063.2 processed_pseudogene SAR1AP4 1 OTTHUMG00000021873.2 pseudo_consens +63063 chrX HAVANA gene 75888700 75888888 189.0 + 0 ENSG00000226753.1 processed_pseudogene AL451105.1 2 OTTHUMG00000021874.1 +63064 chrX HAVANA gene 75903105 75904858 1234.0 + 0 ENSG00000226854.1 lincRNA AL451105.2 2 OTTHUMG00000021872.1 +63065 chrX HAVANA gene 76029895 76030330 436.0 + 0 ENSG00000232332.1 processed_pseudogene AC233982.1 1 OTTHUMG00000021875.2 pseudo_consens +63066 chrX HAVANA gene 76172936 76178204 1201.0 + 0 ENSG00000102390.10 protein_coding PBDC1 2 OTTHUMG00000021876.2 +63067 chrX HAVANA gene 76222637 76223097 461.0 + 0 ENSG00000237252.1 processed_pseudogene AC233981.1 1 OTTHUMG00000021878.1 pseudo_consens +63068 chrX ENSEMBL gene 76244968 76245074 107.0 + 0 ENSG00000201826.1 snRNA RNU6-867P 3 +63069 chrX HAVANA gene 76250183 76251796 1614.0 - 0 ENSG00000274398.1 processed_pseudogene AC233981.2 2 OTTHUMG00000188107.1 +63070 chrX HAVANA gene 76334841 76335845 1005.0 - 0 ENSG00000213684.4 processed_pseudogene LDHBP2 1 OTTHUMG00000021877.3 pseudo_consens +63071 chrX HAVANA gene 76427724 76431353 3630.0 + 0 ENSG00000198934.4 protein_coding MAGEE1 2 OTTHUMG00000021879.2 retrogene +63072 chrX ENSEMBL gene 76655009 76655127 119.0 - 0 ENSG00000223259.1 rRNA_pseudogene RNA5SP508 3 +63073 chrX HAVANA gene 76655498 76656559 1062.0 - 0 ENSG00000235447.2 processed_pseudogene TRAPPC13P1 1 OTTHUMG00000021880.4 pseudo_consens +63074 chrX ENSEMBL gene 76919273 76919360 88.0 - 0 ENSG00000283242.1 miRNA MIR384 3 +63075 chrX ENSEMBL gene 77005404 77005501 98.0 - 0 ENSG00000207995.1 miRNA MIR325 3 +63076 chrX HAVANA gene 76657798 77014532 1826.0 - 0 ENSG00000280870.2 lincRNA MIR325HG 2 OTTHUMG00000189737.1 ncRNA_host +63077 chrX ENSEMBL gene 77066709 77066827 119.0 + 0 ENSG00000201447.1 rRNA_pseudogene RNA5SP509 3 +63078 chrX HAVANA gene 77374212 77381319 570.0 + 0 ENSG00000234404.2 processed_pseudogene SPRYD7P1 1 OTTHUMG00000013135.3 pseudo_consens +63079 chrX HAVANA gene 77447405 77457278 1650.0 + 0 ENSG00000196468.7 protein_coding FGF16 2 OTTHUMG00000013133.2 +63080 chrX HAVANA gene 77727867 77728080 214.0 + 0 ENSG00000237106.2 processed_pseudogene FABP5P15 1 OTTHUMG00000021881.2 pseudo_consens +63081 chrX HAVANA gene 77504878 77786233 19266.0 - 0 ENSG00000085224.22 protein_coding ATRX 2 OTTHUMG00000022686.12 +63082 chrX ENSEMBL gene 77837289 77837395 107.0 + 0 ENSG00000200906.1 snRNA RNU6-854P 3 +63083 chrX ENSEMBL gene 77885377 77885634 258.0 + 0 ENSG00000263410.2 misc_RNA RN7SL460P 3 +63084 chrX HAVANA gene 77826364 77895593 4862.0 - 0 ENSG00000102158.19 protein_coding MAGT1 1 OTTHUMG00000021882.4 +63085 chrX HAVANA gene 77899438 77907373 3024.0 + 0 ENSG00000131174.5 protein_coding COX7B 2 OTTHUMG00000022718.4 +63086 chrX HAVANA gene 77910741 77964890 2433.0 + 0 ENSG00000248503.2 transcribed_processed_pseudogene AL356235.1 2 OTTHUMG00000021883.2 overlapping_locus +63087 chrX HAVANA gene 77968874 77969638 765.0 - 0 ENSG00000226784.2 protein_coding PGAM4 2 OTTHUMG00000057865.3 retrogene +63088 chrX HAVANA gene 77910656 78050395 8529.0 + 0 ENSG00000165240.19 protein_coding ATP7A 2 OTTHUMG00000021885.3 overlapping_locus +63089 chrX HAVANA gene 77910739 78129296 5512.0 + 0 ENSG00000102144.14 protein_coding PGK1 2 OTTHUMG00000021888.2 overlapping_locus +63090 chrX HAVANA gene 78129748 78139706 2791.0 - 0 ENSG00000187325.4 protein_coding TAF9B 2 OTTHUMG00000021887.1 +63091 chrX HAVANA gene 78165696 78172422 1155.0 - 0 ENSG00000223592.2 unitary_pseudogene FNDC3CP 2 OTTHUMG00000021886.2 +63092 chrX HAVANA gene 78271464 78327691 5571.0 - 0 ENSG00000173198.5 protein_coding CYSLTR1 2 OTTHUMG00000021889.1 +63093 chrX HAVANA gene 78519593 78520186 290.0 - 0 ENSG00000224755.1 processed_pseudogene HMGN1P34 2 OTTHUMG00000021890.1 +63094 chrX HAVANA gene 78554412 78554751 340.0 - 0 ENSG00000235061.3 processed_pseudogene UBE2V1P7 1 OTTHUMG00000021891.3 pseudo_consens +63095 chrX HAVANA gene 78656069 78659328 2648.0 - 0 ENSG00000179300.3 protein_coding RTL3 2 OTTHUMG00000021892.1 +63096 chrX HAVANA gene 78699384 78699891 508.0 - 0 ENSG00000271433.1 processed_pseudogene PPATP2 1 OTTHUMG00000185044.1 pseudo_consens +63097 chrX HAVANA gene 78747709 78757094 3113.0 + 0 ENSG00000147145.12 protein_coding LPAR4 2 OTTHUMG00000021895.3 +63098 chrX HAVANA gene 78763226 78763899 674.0 + 0 ENSG00000227645.2 processed_pseudogene RPL7P54 1 OTTHUMG00000021894.2 pseudo_consens +63099 chrX ENSEMBL gene 78901194 78901249 56.0 - 0 ENSG00000283622.1 miRNA MIR4328 3 +63100 chrX HAVANA gene 78945332 78961954 1803.0 + 0 ENSG00000078589.12 protein_coding P2RY10 2 OTTHUMG00000021896.1 +63101 chrX HAVANA gene 79084936 79085848 913.0 + 0 ENSG00000232168.2 unitary_pseudogene P2RY10BP 2 OTTHUMG00000021897.2 +63102 chrX HAVANA gene 79144663 79175315 5516.0 + 0 ENSG00000147138.2 protein_coding GPR174 2 OTTHUMG00000021898.2 +63103 chrX HAVANA gene 79177200 79177668 469.0 - 0 ENSG00000271005.1 processed_pseudogene CTHRC1P1 1 OTTHUMG00000185045.1 pseudo_consens +63104 chrX HAVANA gene 79323446 79325217 1279.0 + 0 ENSG00000225025.2 processed_pseudogene KIF4CP 1 OTTHUMG00000021899.2 pseudo_consens +63105 chrX HAVANA gene 79360384 79367667 2051.0 - 0 ENSG00000078596.10 protein_coding ITM2A 2 OTTHUMG00000021900.1 +63106 chrX HAVANA gene 79369364 79370165 802.0 - 0 ENSG00000270268.1 processed_pseudogene AL009028.1 1 OTTHUMG00000185068.1 pseudo_consens +63107 chrX HAVANA gene 80014756 80031769 2654.0 + 0 ENSG00000122145.14 protein_coding TBX22 2 OTTHUMG00000021901.2 +63108 chrX HAVANA gene 80228489 80335364 7046.0 - 0 ENSG00000278530.4 transcribed_unitary_pseudogene CHMP1B2P 2 OTTHUMG00000021903.3 +63109 chrX HAVANA gene 80335504 80445311 3204.0 + 0 ENSG00000174016.11 protein_coding TENT5D 2 OTTHUMG00000021902.1 +63110 chrX HAVANA gene 80529037 80530027 583.0 + 0 ENSG00000230247.2 processed_pseudogene HNRNPH3P1 1 OTTHUMG00000021904.2 pseudo_consens +63111 chrX HAVANA gene 80560146 80562054 1909.0 + 0 ENSG00000228051.1 processed_pseudogene AL512504.2 1 OTTHUMG00000021905.1 pseudo_consens +63112 chrX HAVANA gene 80571871 80574607 2737.0 - 0 ENSG00000228612.2 processed_pseudogene HK2P1 1 OTTHUMG00000021906.2 pseudo_consens +63113 chrX HAVANA gene 80709928 80710705 778.0 + 0 ENSG00000225715.1 processed_pseudogene AL512504.1 1 OTTHUMG00000021907.1 pseudo_consens +63114 chrX HAVANA gene 80670854 80809688 12694.0 - 0 ENSG00000165288.10 protein_coding BRWD3 2 OTTHUMG00000021908.3 +63115 chrX ENSEMBL gene 80857076 80857202 127.0 - 0 ENSG00000239008.1 snoRNA RF01225 3 +63116 chrX ENSEMBL gene 80900757 80900864 108.0 + 0 ENSG00000212623.1 snRNA RNU6-493P 3 +63117 chrX HAVANA gene 80929500 80930347 848.0 + 0 ENSG00000073905.8 processed_pseudogene VDAC1P1 1 OTTHUMG00000021909.2 pseudo_consens +63118 chrX ENSEMBL gene 80936434 80936540 107.0 + 0 ENSG00000212546.1 snRNA RNU6-995P 3 +63119 chrX HAVANA gene 81000150 81004217 4068.0 - 0 ENSG00000284618.1 lincRNA AL391294.1 2 OTTHUMG00000192346.2 +63120 chrX HAVANA gene 81113701 81201942 2416.0 - 0 ENSG00000198157.10 protein_coding HMGN5 2 OTTHUMG00000021911.2 +63121 chrX HAVANA gene 81201943 81298547 2304.0 + 0 ENSG00000131171.12 protein_coding SH3BGRL 2 OTTHUMG00000021910.1 +63122 chrX HAVANA gene 81363268 81364170 903.0 + 0 ENSG00000231875.1 processed_pseudogene AL359885.1 2 OTTHUMG00000021912.1 +63123 chrX HAVANA gene 81408938 81427276 747.0 + 0 ENSG00000224523.1 unprocessed_pseudogene AL445213.1 2 OTTHUMG00000021913.1 +63124 chrX HAVANA gene 81600072 81601306 1235.0 + 0 ENSG00000233446.2 processed_pseudogene AL691517.1 1 OTTHUMG00000021914.2 pseudo_consens +63125 chrX ENSEMBL gene 82001220 82001327 108.0 - 0 ENSG00000206826.1 snRNA RNU6-974P 3 +63126 chrX HAVANA gene 82497669 82497924 256.0 - 0 ENSG00000228041.2 processed_pseudogene AL031313.1 1 OTTHUMG00000021915.2 pseudo_consens +63127 chrX HAVANA gene 82506434 82506812 379.0 - 0 ENSG00000213653.4 processed_pseudogene RPL22P22 1 OTTHUMG00000021916.3 pseudo_consens +63128 chrX ENSEMBL gene 82561201 82561347 147.0 + 0 ENSG00000202183.1 snoRNA RF00394 3 +63129 chrX HAVANA gene 82875649 82875885 237.0 + 0 ENSG00000236365.1 processed_pseudogene AL008987.1 1 OTTHUMG00000021917.1 pseudo_consens +63130 chrX HAVANA gene 82998699 82999236 538.0 + 0 ENSG00000232735.2 processed_pseudogene ATG4AP1 1 OTTHUMG00000021918.2 pseudo_consens +63131 chrX HAVANA gene 83506023 83509214 3192.0 - 0 ENSG00000279437.1 TEC Z82170.1 2 OTTHUMG00000185373.2 +63132 chrX HAVANA gene 83508261 83512127 3867.0 + 0 ENSG00000196767.7 protein_coding POU3F4 2 OTTHUMG00000021919.5 retrogene +63133 chrX HAVANA gene 83559896 83560312 417.0 - 0 ENSG00000236870.2 processed_pseudogene AL121882.1 1 OTTHUMG00000021920.2 pseudo_consens +63134 chrX HAVANA gene 83748825 83749939 1115.0 - 0 ENSG00000215102.2 processed_pseudogene TERF1P4 1 OTTHUMG00000021921.1 pseudo_consens +63135 chrX HAVANA gene 83861126 83886699 2128.0 + 0 ENSG00000183035.12 protein_coding CYLC1 2 OTTHUMG00000021922.1 +63136 chrX HAVANA gene 84058346 84187907 8502.0 - 0 ENSG00000072133.10 protein_coding RPS6KA6 2 OTTHUMG00000021923.1 +63137 chrX ENSEMBL gene 84225752 84225828 77.0 - 0 ENSG00000221494.1 miRNA MIR548I4 3 +63138 chrX HAVANA gene 84403898 84404024 127.0 - 0 ENSG00000233484.2 transcribed_processed_pseudogene AL450471.1 2 OTTHUMG00000021925.2 overlapping_locus +63139 chrX HAVANA gene 84317874 84502479 7258.0 - 0 ENSG00000165259.13 protein_coding HDX 2 OTTHUMG00000021926.6 overlapping_locus +63140 chrX HAVANA gene 84755136 84756003 868.0 + 0 ENSG00000237211.2 processed_pseudogene SETP4 1 OTTHUMG00000021927.3 pseudo_consens +63141 chrX HAVANA gene 84934151 84934890 740.0 + 0 ENSG00000229547.4 transcribed_processed_pseudogene UBE2DNL 1 OTTHUMG00000021928.4 pseudo_consens +63142 chrX HAVANA gene 84973217 84977829 1499.0 + 0 ENSG00000230781.1 unitary_pseudogene Z83820.1 2 OTTHUMG00000154699.2 +63143 chrX HAVANA gene 85003826 85093316 6548.0 + 0 ENSG00000155008.13 protein_coding APOOL 2 OTTHUMG00000021930.2 +63144 chrX HAVANA gene 85143427 85156444 394.0 + 0 ENSG00000283446.1 unprocessed_pseudogene Z99571.1 2 OTTHUMG00000191717.1 +63145 chrX HAVANA gene 85207187 85210649 831.0 + 0 ENSG00000276391.1 processed_pseudogene AC003001.2 1 OTTHUMG00000188093.1 pseudo_consens +63146 chrX HAVANA gene 85210706 85219698 1135.0 + 0 ENSG00000235461.1 lincRNA AC003001.1 2 OTTHUMG00000021932.1 +63147 chrX HAVANA gene 85092287 85243961 7037.0 - 0 ENSG00000184788.13 protein_coding SATL1 2 OTTHUMG00000021931.3 +63148 chrX HAVANA gene 85244032 85273362 5004.0 + 0 ENSG00000147180.16 protein_coding ZNF711 2 OTTHUMG00000021933.3 +63149 chrX HAVANA gene 85277396 85379743 4029.0 - 0 ENSG00000124429.17 protein_coding POF1B 2 OTTHUMG00000021934.4 +63150 chrX ENSEMBL gene 85835780 85835858 79.0 + 0 ENSG00000283435.1 miRNA MIR1321 3 +63151 chrX HAVANA gene 85849410 85850139 730.0 - 0 ENSG00000223707.2 processed_pseudogene SFR1P2 1 OTTHUMG00000021935.2 pseudo_consens +63152 chrX HAVANA gene 85851575 85851682 108.0 - 0 ENSG00000276892.1 processed_pseudogene AL022401.1 2 OTTHUMG00000188095.1 +63153 chrX ENSEMBL gene 85903636 85903707 72.0 - 0 ENSG00000199051.3 miRNA MIR361 3 +63154 chrX ENSEMBL gene 86019608 86019715 108.0 + 0 ENSG00000199567.1 misc_RNA RF00019 3 +63155 chrX HAVANA gene 85861180 86047562 8645.0 - 0 ENSG00000188419.13 protein_coding CHM 2 OTTHUMG00000021937.6 ncRNA_host +63156 chrX HAVANA gene 86066227 86066468 242.0 - 0 ENSG00000234039.2 processed_pseudogene NDUFA5P7 1 OTTHUMG00000021938.2 pseudo_consens +63157 chrX HAVANA gene 86084716 86086339 1624.0 - 0 ENSG00000225536.2 processed_pseudogene STIP1P3 1 OTTHUMG00000021939.2 pseudo_consens +63158 chrX HAVANA gene 86128893 86129570 678.0 - 0 ENSG00000223574.1 processed_pseudogene TPMTP4 1 OTTHUMG00000021940.1 pseudo_consens +63159 chrX HAVANA gene 86160264 86161359 1096.0 - 0 ENSG00000215093.3 processed_pseudogene EEF1A1P29 1 OTTHUMG00000021941.1 pseudo_consens +63160 chrX HAVANA gene 86304367 86305086 720.0 + 0 ENSG00000223772.1 processed_pseudogene GEMIN8P3 1 OTTHUMG00000021942.1 pseudo_consens,overlapping_locus +63161 chrX ENSEMBL gene 86481028 86481130 103.0 + 0 ENSG00000277717.1 snRNA RF00026 3 +63162 chrX HAVANA gene 86481532 86481813 282.0 + 0 ENSG00000231478.1 transcribed_processed_pseudogene FCF1P9 1 OTTHUMG00000021943.1 pseudo_consens,overlapping_locus +63163 chrX HAVANA gene 86798598 86799226 629.0 - 0 ENSG00000271290.1 processed_pseudogene AL390058.1 1 OTTHUMG00000185002.1 pseudo_consens +63164 chrX HAVANA gene 86148458 86832604 7039.0 + 0 ENSG00000126733.20 protein_coding DACH2 2 OTTHUMG00000021944.3 ncRNA_host,overlapping_locus +63165 chrX HAVANA gene 86888586 86888816 231.0 + 0 ENSG00000236190.1 processed_pseudogene Z82210.1 1 OTTHUMG00000021945.1 pseudo_consens +63166 chrX HAVANA gene 87143854 87144748 542.0 - 0 ENSG00000271457.1 processed_pseudogene AL590229.1 1 OTTHUMG00000185039.1 pseudo_consens +63167 chrX ENSEMBL gene 87146733 87146804 72.0 + 0 ENSG00000200422.1 snoRNA RF00279 3 +63168 chrX HAVANA gene 87425583 87425690 108.0 - 0 ENSG00000230478.1 processed_pseudogene Z96811.1 2 OTTHUMG00000040021.1 +63169 chrX HAVANA gene 87517749 87670050 5818.0 + 0 ENSG00000102271.13 protein_coding KLHL4 2 OTTHUMG00000021946.2 +63170 chrX HAVANA gene 87703343 87704203 861.0 - 0 ENSG00000237506.3 processed_pseudogene RPSAP15 2 OTTHUMG00000021947.1 +63171 chrX HAVANA gene 87723089 87723238 150.0 - 0 ENSG00000271205.1 processed_pseudogene Z83818.1 2 OTTHUMG00000185003.1 +63172 chrX HAVANA gene 87707579 87750883 433.0 - 0 ENSG00000282914.1 lincRNA Z83818.2 2 OTTHUMG00000191554.1 +63173 chrX HAVANA gene 87806433 87806769 337.0 - 0 ENSG00000270446.1 processed_pseudogene AL136363.1 1 OTTHUMG00000185047.1 pseudo_consens +63174 chrX HAVANA gene 87807549 87809883 851.0 - 0 ENSG00000271056.1 processed_pseudogene AL136363.2 1 OTTHUMG00000185048.1 pseudo_consens +63175 chrX HAVANA gene 88061590 88062844 1255.0 - 0 ENSG00000230706.2 processed_pseudogene AL035246.1 1 OTTHUMG00000021948.2 pseudo_consens +63176 chrX HAVANA gene 88096393 88097225 833.0 - 0 ENSG00000230956.2 processed_pseudogene AL024493.1 1 OTTHUMG00000021949.2 pseudo_consens +63177 chrX ENSEMBL gene 88148792 88148918 127.0 + 0 ENSG00000252016.1 snoRNA RF01225 3 +63178 chrX HAVANA gene 88369343 88369459 117.0 + 0 ENSG00000271693.1 processed_pseudogene AL929325.1 1 OTTHUMG00000185070.1 pseudo_consens +63179 chrX HAVANA gene 88747225 88754785 1630.0 + 0 ENSG00000147183.9 protein_coding CPXCR1 2 OTTHUMG00000021950.1 +63180 chrX HAVANA gene 88827554 88829858 785.0 - 0 ENSG00000271157.1 processed_pseudogene AL022154.1 1 OTTHUMG00000185080.1 pseudo_consens +63181 chrX HAVANA gene 88908403 88908763 361.0 + 0 ENSG00000232576.2 processed_pseudogene AL645638.1 1 OTTHUMG00000021951.2 pseudo_consens +63182 chrX HAVANA gene 88982215 88982353 139.0 - 0 ENSG00000270745.1 processed_pseudogene AL731768.1 1 OTTHUMG00000185072.1 pseudo_consens +63183 chrX HAVANA gene 89367435 89367600 166.0 - 0 ENSG00000224065.2 processed_pseudogene SRIP2 1 OTTHUMG00000021952.2 pseudo_consens +63184 chrX HAVANA gene 89423738 89446983 469.0 + 0 ENSG00000225012.5 lincRNA AL121872.1 2 OTTHUMG00000021953.1 +63185 chrX HAVANA gene 89921882 89922883 1002.0 + 0 ENSG00000153779.10 protein_coding TGIF2LX 2 OTTHUMG00000021954.3 +63186 chrX HAVANA gene 90039213 90039834 622.0 - 0 ENSG00000227581.2 processed_pseudogene AL121877.1 1 OTTHUMG00000021955.2 pseudo_consens +63187 chrX HAVANA gene 90112650 90113706 1057.0 + 0 ENSG00000226081.2 processed_pseudogene USP12PX 1 OTTHUMG00000021956.2 pseudo_consens +63188 chrX HAVANA gene 90208895 90209418 524.0 - 0 ENSG00000274022.1 processed_pseudogene AL121873.1 1 OTTHUMG00000188108.1 pseudo_consens +63189 chrX HAVANA gene 90209796 90210420 625.0 - 0 ENSG00000227434.2 processed_pseudogene RNF19BPX 1 OTTHUMG00000040023.2 pseudo_consens +63190 chrX HAVANA gene 90289536 90289903 368.0 - 0 ENSG00000229667.2 processed_pseudogene UBE2V1P9 1 OTTHUMG00000021957.2 pseudo_consens +63191 chrX ENSEMBL gene 90597235 90597340 106.0 - 0 ENSG00000207515.1 snRNA RNU6-555P 3 +63192 chrX HAVANA gene 91307781 91308878 741.0 + 0 ENSG00000206062.4 lincRNA AL121823.1 1 OTTHUMG00000021958.1 +63193 chrX HAVANA gene 91422309 91422538 230.0 + 0 ENSG00000236413.2 processed_pseudogene AL662874.1 1 OTTHUMG00000021961.2 pseudo_consens +63194 chrX HAVANA gene 91414878 91434999 426.0 - 0 ENSG00000234161.1 antisense PABPC5-AS1 2 OTTHUMG00000021960.1 +63195 chrX HAVANA gene 91434595 91438584 3450.0 + 0 ENSG00000174740.7 protein_coding PABPC5 2 OTTHUMG00000021959.1 retrogene +63196 chrX HAVANA gene 91560436 91561597 1162.0 - 0 ENSG00000230275.2 processed_pseudogene SERBP1P4 1 OTTHUMG00000021962.2 pseudo_consens +63197 chrX ENSEMBL gene 91798093 91798283 191.0 + 0 ENSG00000222440.1 snRNA RNU2-26P 3 +63198 chrX HAVANA gene 91982655 91983505 851.0 - 0 ENSG00000234702.1 processed_pseudogene VDAC1P3 1 OTTHUMG00000021963.1 pseudo_consens +63199 chrX HAVANA gene 92113246 92114461 1216.0 - 0 ENSG00000229132.2 processed_pseudogene EIF4A1P10 1 OTTHUMG00000021964.3 pseudo_consens +63200 chrX HAVANA gene 92459670 92460952 1283.0 + 0 ENSG00000215089.3 processed_pseudogene KRT18P11 1 OTTHUMG00000021966.1 pseudo_consens,overlapping_locus +63201 chrX HAVANA gene 92515323 92515497 175.0 - 0 ENSG00000230543.1 processed_pseudogene SNX3P1X 2 OTTHUMG00000021967.1 +63202 chrX HAVANA gene 91779261 92623230 11630.0 + 0 ENSG00000102290.22 protein_coding PCDH11X 2 OTTHUMG00000021965.8 ncRNA_host,overlapping_locus +63203 chrX HAVANA gene 92676519 92676954 436.0 - 0 ENSG00000225912.1 processed_pseudogene AL121871.1 1 OTTHUMG00000021968.1 pseudo_consens +63204 chrX HAVANA gene 92770855 92772091 1237.0 + 0 ENSG00000285445.1 processed_pseudogene AL121871.2 2 OTTHUMG00000192470.1 +63205 chrX HAVANA gene 93042490 93042942 453.0 + 0 ENSG00000237873.1 processed_pseudogene AL158053.1 1 OTTHUMG00000021969.1 pseudo_consens +63206 chrX HAVANA gene 93222220 93225015 2796.0 - 0 ENSG00000234130.2 processed_pseudogene AL359263.1 1 OTTHUMG00000021970.2 pseudo_consens +63207 chrX HAVANA gene 93287733 93288759 1027.0 - 0 ENSG00000234322.1 processed_pseudogene ST13P18 1 OTTHUMG00000021971.1 pseudo_consens +63208 chrX HAVANA gene 93388075 93389497 1423.0 - 0 ENSG00000237381.2 processed_pseudogene AL023280.1 1 OTTHUMG00000021972.2 pseudo_consens +63209 chrX HAVANA gene 93573834 93574579 746.0 + 0 ENSG00000228301.1 processed_pseudogene RPL7P55 1 OTTHUMG00000021973.1 pseudo_consens +63210 chrX HAVANA gene 93670930 93673568 2639.0 - 0 ENSG00000186310.9 protein_coding NAP1L3 2 OTTHUMG00000021974.2 retrogene +63211 chrX HAVANA gene 93674013 93712274 3381.0 + 0 ENSG00000179083.6 protein_coding FAM133A 2 OTTHUMG00000021975.2 +63212 chrX HAVANA gene 93776911 93777384 474.0 - 0 ENSG00000270826.1 processed_pseudogene Z94722.1 1 OTTHUMG00000185075.1 pseudo_consens +63213 chrX ENSEMBL gene 94003815 94003922 108.0 - 0 ENSG00000212495.1 snRNA RNU6-332P 3 +63214 chrX ENSEMBL gene 94178005 94178106 102.0 + 0 ENSG00000202410.1 misc_RNA RF00019 3 +63215 chrX HAVANA gene 94319038 94320025 988.0 + 0 ENSG00000227521.2 processed_pseudogene AL390840.1 2 OTTHUMG00000021976.2 +63216 chrX HAVANA gene 94636663 94639570 962.0 - 0 ENSG00000232293.2 processed_pseudogene PAICSP7 1 OTTHUMG00000021977.2 pseudo_consens +63217 chrX HAVANA gene 94776739 94777567 829.0 - 0 ENSG00000231001.2 processed_pseudogene CCNB1IP1P3 1 OTTHUMG00000021978.2 pseudo_consens +63218 chrX ENSEMBL gene 95063141 95063226 86.0 - 0 ENSG00000221187.1 miRNA MIR548M 3 +63219 chrX HAVANA gene 95453369 95453581 213.0 + 0 ENSG00000271094.1 processed_pseudogene AL022161.1 1 OTTHUMG00000185056.1 pseudo_consens +63220 chrX HAVANA gene 95499604 95500036 433.0 + 0 ENSG00000223467.2 processed_pseudogene CALM1P1 1 OTTHUMG00000021979.2 pseudo_consens +63221 chrX ENSEMBL gene 95582064 95582162 99.0 + 0 ENSG00000201567.1 rRNA_pseudogene RNA5SP510 3 +63222 chrX HAVANA gene 95584303 95584942 640.0 + 0 ENSG00000215085.4 processed_pseudogene AL365400.1 1 OTTHUMG00000021981.2 pseudo_consens +63223 chrX HAVANA gene 95610578 95610957 380.0 + 0 ENSG00000236185.1 processed_pseudogene HNRNPDLP3 1 OTTHUMG00000154905.1 pseudo_consens +63224 chrX HAVANA gene 95638375 95638924 550.0 + 0 ENSG00000226307.1 processed_pseudogene HNRNPDLP1 1 OTTHUMG00000021982.1 pseudo_consens +63225 chrX HAVANA gene 95679130 95679627 498.0 - 0 ENSG00000235425.2 processed_pseudogene RPS7P13 1 OTTHUMG00000021980.2 pseudo_consens +63226 chrX HAVANA gene 95720243 95721144 902.0 + 0 ENSG00000270583.1 processed_pseudogene AL365400.2 1 OTTHUMG00000185060.1 pseudo_consens +63227 chrX HAVANA gene 95973328 95974315 988.0 - 0 ENSG00000232842.2 processed_pseudogene AL137845.2 1 OTTHUMG00000021983.2 pseudo_consens +63228 chrX ENSEMBL gene 96023360 96023652 293.0 + 0 ENSG00000242998.3 misc_RNA RN7SL379P 3 +63229 chrX HAVANA gene 96070669 96071778 1110.0 - 0 ENSG00000203262.3 processed_pseudogene AL137845.1 2 OTTHUMG00000021984.2 +63230 chrX HAVANA gene 96195477 96195617 141.0 + 0 ENSG00000232069.1 processed_pseudogene RPS29P28 1 OTTHUMG00000021985.1 pseudo_consens +63231 chrX HAVANA gene 96337236 96337912 677.0 - 0 ENSG00000271209.1 processed_pseudogene BRDTP1 1 OTTHUMG00000185081.1 pseudo_consens +63232 chrX ENSEMBL gene 96410432 96410782 351.0 - 0 ENSG00000223260.1 misc_RNA RN7SKP194 3 +63233 chrX HAVANA gene 96620654 96621903 1250.0 + 0 ENSG00000229693.2 processed_pseudogene AL606530.1 1 OTTHUMG00000021986.2 pseudo_consens +63234 chrX ENSEMBL gene 96701507 96701619 113.0 - 0 ENSG00000207426.1 misc_RNA RF00019 3 +63235 chrX HAVANA gene 96883908 96885467 1560.0 + 0 ENSG00000204086.4 protein_coding RPA4 2 OTTHUMG00000021987.1 overlapping_locus,retrogene +63236 chrX HAVANA gene 96953630 96954195 566.0 - 0 ENSG00000214628.3 processed_pseudogene NDUFB5P2 1 OTTHUMG00000021988.2 pseudo_consens +63237 chrX ENSEMBL gene 97081674 97081956 283.0 + 0 ENSG00000277900.1 misc_RNA RF00017 3 +63238 chrX ENSEMBL gene 97341046 97341344 299.0 + 0 ENSG00000265260.2 misc_RNA RN7SL74P 3 +63239 chrX HAVANA gene 96684663 97604997 9550.0 + 0 ENSG00000147202.17 protein_coding DIAPH2 2 OTTHUMG00000022689.2 ncRNA_host,overlapping_locus +63240 chrX HAVANA gene 97431286 97642589 2309.0 - 0 ENSG00000236256.9 antisense DIAPH2-AS1 2 OTTHUMG00000021989.3 +63241 chrX HAVANA gene 97847263 97849017 1755.0 + 0 ENSG00000233887.1 processed_pseudogene AL354685.1 2 OTTHUMG00000021991.2 +63242 chrX HAVANA gene 97906644 97908090 1447.0 + 0 ENSG00000237752.2 processed_pseudogene AL354685.2 1 OTTHUMG00000021990.2 pseudo_consens +63243 chrX HAVANA gene 97975878 97978641 2764.0 - 0 ENSG00000234889.2 processed_pseudogene AL391666.1 1 OTTHUMG00000021992.2 pseudo_consens +63244 chrX HAVANA gene 98251679 98252543 865.0 + 0 ENSG00000236243.2 processed_pseudogene RPL6P29 1 OTTHUMG00000021993.2 pseudo_consens +63245 chrX HAVANA gene 98348451 98348748 298.0 - 0 ENSG00000271322.1 processed_pseudogene AL357312.1 1 OTTHUMG00000185086.1 pseudo_consens +63246 chrX HAVANA gene 98389512 98390919 1408.0 + 0 ENSG00000213704.3 processed_pseudogene EEF1A1P15 1 OTTHUMG00000021994.2 pseudo_consens +63247 chrX HAVANA gene 98422138 98422809 565.0 + 0 ENSG00000226837.2 processed_pseudogene HMGB1P32 1 OTTHUMG00000021995.2 pseudo_consens +63248 chrX HAVANA gene 98450688 98892061 2639.0 + 0 ENSG00000281566.3 lincRNA AL157778.1 2 OTTHUMG00000189756.2 +63249 chrX HAVANA gene 99656997 99657381 385.0 + 0 ENSG00000270308.1 processed_pseudogene AL137843.1 1 OTTHUMG00000185073.2 pseudo_consens +63250 chrX HAVANA gene 99719364 99721158 1795.0 - 0 ENSG00000215070.4 processed_pseudogene XRCC6P5 1 OTTHUMG00000021996.2 pseudo_consens +63251 chrX HAVANA gene 99886740 99887691 952.0 - 0 ENSG00000229946.2 processed_pseudogene B3GNT2P1 1 OTTHUMG00000021997.2 pseudo_consens +63252 chrX ENSEMBL gene 100100084 100100172 89.0 + 0 ENSG00000252296.2 snoRNA RF00402 3 +63253 chrX HAVANA gene 100149783 100151340 1558.0 - 0 ENSG00000236988.2 processed_pseudogene AL359641.1 1 OTTHUMG00000021998.2 pseudo_consens +63254 chrX HAVANA gene 100155885 100156773 889.0 - 0 ENSG00000230592.2 processed_pseudogene RPSAP8 1 OTTHUMG00000021999.2 pseudo_consens +63255 chrX HAVANA gene 100291644 100410273 9756.0 - 0 ENSG00000165194.15 protein_coding PCDH19 2 OTTHUMG00000022000.5 +63256 chrX HAVANA gene 100584802 100599885 1610.0 + 0 ENSG00000000005.5 protein_coding TNMD 2 OTTHUMG00000022001.1 +63257 chrX HAVANA gene 100627109 100639991 4535.0 - 0 ENSG00000000003.14 protein_coding TSPAN6 2 OTTHUMG00000022002.1 +63258 chrX HAVANA gene 100644166 100675788 7548.0 + 0 ENSG00000102359.6 protein_coding SRPX2 2 OTTHUMG00000022003.3 +63259 chrX HAVANA gene 100674491 100732123 7428.0 - 0 ENSG00000102362.15 protein_coding SYTL4 2 OTTHUMG00000022004.1 +63260 chrX HAVANA gene 100800303 100800784 482.0 - 0 ENSG00000223819.2 processed_pseudogene PPIAP89 1 OTTHUMG00000022005.2 pseudo_consens +63261 chrX HAVANA gene 100801188 100803060 1873.0 + 0 ENSG00000238116.2 processed_pseudogene Z95327.1 1 OTTHUMG00000022006.2 pseudo_consens +63262 chrX HAVANA gene 100815865 100817174 572.0 - 0 ENSG00000275320.1 processed_pseudogene Z95327.2 2 OTTHUMG00000188090.1 +63263 chrX ENSEMBL gene 100822620 100822752 133.0 - 0 ENSG00000202231.1 snoRNA RF00411 3 +63264 chrX HAVANA gene 100820359 100840932 2187.0 + 0 ENSG00000101811.13 protein_coding CSTF2 2 OTTHUMG00000022709.3 +63265 chrX HAVANA gene 100855288 100856379 1092.0 - 0 ENSG00000239345.2 processed_pseudogene HNRNPA1P26 1 OTTHUMG00000022008.3 pseudo_consens,overlapping_locus +63266 chrX HAVANA gene 100843324 100874345 2529.0 - 0 ENSG00000007952.17 protein_coding NOX1 2 OTTHUMG00000022007.1 overlapping_locus +63267 chrX HAVANA gene 100887636 100888590 955.0 - 0 ENSG00000233680.4 processed_pseudogene HNRNPA1P27 1 OTTHUMG00000022009.2 pseudo_consens +63268 chrX HAVANA gene 100910712 100911489 778.0 + 0 ENSG00000179031.8 processed_pseudogene Z73417.1 1 OTTHUMG00000022011.2 pseudo_consens +63269 chrX HAVANA gene 100913445 100929433 3372.0 - 0 ENSG00000182489.8 protein_coding XKRX 1 OTTHUMG00000022010.3 +63270 chrX HAVANA gene 100956593 100957538 946.0 + 0 ENSG00000182574.8 processed_pseudogene Z97985.1 1 OTTHUMG00000022012.2 pseudo_consens +63271 chrX HAVANA gene 100969708 100990829 1535.0 + 0 ENSG00000174225.14 protein_coding ARL13A 1 OTTHUMG00000022013.5 +63272 chrX HAVANA gene 101009346 101052116 4055.0 - 0 ENSG00000188917.14 protein_coding TRMT2B 2 OTTHUMG00000022017.4 overlapping_locus +63273 chrX HAVANA gene 101043564 101094476 205.0 - 0 ENSG00000225839.2 sense_overlapping TRMT2B-AS1 2 OTTHUMG00000022015.2 overlapping_locus +63274 chrX HAVANA gene 101078720 101096364 2571.0 + 0 ENSG00000126950.7 protein_coding TMEM35A 2 OTTHUMG00000022016.1 +63275 chrX HAVANA gene 101098218 101163681 4321.0 + 0 ENSG00000102384.13 protein_coding CENPI 2 OTTHUMG00000022018.2 +63276 chrX HAVANA gene 101191115 101191409 295.0 - 0 ENSG00000231643.4 processed_pseudogene Z70280.1 1 OTTHUMG00000022019.2 pseudo_consens +63277 chrX HAVANA gene 101219769 101264497 8187.0 + 0 ENSG00000102385.12 protein_coding DRP2 2 OTTHUMG00000022020.3 +63278 chrX HAVANA gene 101268253 101293057 2714.0 - 0 ENSG00000102387.15 protein_coding TAF7L 2 OTTHUMG00000022021.2 +63279 chrX ENSEMBL gene 101325404 101325510 107.0 + 0 ENSG00000202024.1 snRNA RNU6-934P 3 +63280 chrX HAVANA gene 101337725 101338289 565.0 - 0 ENSG00000270813.2 processed_pseudogene NANOGNBP3 1 OTTHUMG00000185071.2 pseudo_consens +63281 chrX HAVANA gene 101339917 101340934 462.0 + 0 ENSG00000183911.7 processed_pseudogene RPL21P132 1 OTTHUMG00000022023.1 pseudo_consens +63282 chrX HAVANA gene 101345659 101349196 3538.0 - 0 ENSG00000126953.6 protein_coding TIMM8A 2 OTTHUMG00000022028.4 +63283 chrX HAVANA gene 101349447 101390796 4575.0 - 0 ENSG00000010671.15 protein_coding BTK 2 OTTHUMG00000022022.2 +63284 chrX HAVANA gene 101390824 101396154 3964.0 + 0 ENSG00000241343.9 protein_coding RPL36A 2 OTTHUMG00000022027.7 overlapping_locus +63285 chrX HAVANA gene 101397803 101408012 2275.0 - 0 ENSG00000102393.10 protein_coding GLA 2 OTTHUMG00000022026.4 +63286 chrX HAVANA gene 101391011 101412297 695.0 + 0 ENSG00000257529.5 protein_coding RPL36A-HNRNPH2 1 OTTHUMG00000170052.2 overlapping_locus +63287 chrX HAVANA gene 101408295 101414133 2223.0 + 0 ENSG00000126945.8 protein_coding HNRNPH2 2 OTTHUMG00000022029.1 overlapping_locus,retrogene +63288 chrX HAVANA gene 101443707 101444103 397.0 - 0 ENSG00000234557.2 processed_pseudogene PPIAP90 1 OTTHUMG00000022025.2 pseudo_consens +63289 chrX HAVANA gene 101418287 101533459 13351.0 + 0 ENSG00000196440.11 protein_coding ARMCX4 2 OTTHUMG00000022030.8 +63290 chrX HAVANA gene 101537485 101539276 1792.0 - 0 ENSG00000237682.2 processed_pseudogene AC234775.2 1 OTTHUMG00000022032.3 pseudo_consens +63291 chrX HAVANA gene 101550531 101554700 2141.0 + 0 ENSG00000126947.12 protein_coding ARMCX1 2 OTTHUMG00000022033.2 retrogene +63292 chrX HAVANA gene 101597510 101598671 1162.0 + 0 ENSG00000204072.3 transcribed_unprocessed_pseudogene ARMCX7P 2 OTTHUMG00000022036.3 +63293 chrX HAVANA gene 101615118 101618001 2489.0 - 0 ENSG00000198960.10 protein_coding ARMCX6 2 OTTHUMG00000022034.2 retrogene +63294 chrX HAVANA gene 101622983 101624164 490.0 - 0 ENSG00000228275.1 antisense ARMCX3-AS1 2 OTTHUMG00000022037.1 +63295 chrX HAVANA gene 101622797 101627843 4239.0 + 0 ENSG00000102401.19 protein_coding ARMCX3 2 OTTHUMG00000022035.3 retrogene +63296 chrX HAVANA gene 101627868 101628523 656.0 + 0 ENSG00000261101.2 sense_overlapping AC234775.3 2 OTTHUMG00000175561.3 +63297 chrX ENSEMBL gene 101634006 101634112 107.0 - 0 ENSG00000207291.1 snRNA RNU6-30P 3 +63298 chrX HAVANA gene 101655281 101659891 3589.0 - 0 ENSG00000184867.13 protein_coding ARMCX2 2 OTTHUMG00000022038.3 retrogene +63299 chrX HAVANA gene 101683780 101684449 670.0 + 0 ENSG00000223753.2 processed_pseudogene AC234775.1 1 OTTHUMG00000022039.3 pseudo_consens +63300 chrX ENSEMBL gene 101691580 101691685 106.0 + 0 ENSG00000212584.1 snRNA RNU6-587P 3 +63301 chrX HAVANA gene 101720340 101721709 1370.0 - 0 ENSG00000229090.2 processed_pseudogene FO082842.1 2 OTTHUMG00000022040.2 +63302 chrX HAVANA gene 101778969 101780538 1570.0 - 0 ENSG00000178146.9 processed_pseudogene AL672207.1 1 OTTHUMG00000022041.2 pseudo_consens +63303 chrX HAVANA gene 101832112 101857577 2158.0 - 0 ENSG00000126952.16 protein_coding NXF5 2 OTTHUMG00000022042.4 +63304 chrX HAVANA gene 101911529 101912072 544.0 + 0 ENSG00000235196.3 processed_pseudogene Z68868.1 2 OTTHUMG00000022043.2 +63305 chrX ENSEMBL gene 101915589 101915695 107.0 + 0 ENSG00000252810.1 snRNA RNU6-345P 3 +63306 chrX HAVANA gene 101882288 101932031 7514.0 - 0 ENSG00000166432.14 protein_coding ZMAT1 2 OTTHUMG00000022044.3 +63307 chrX HAVANA gene 101989481 101989872 392.0 - 0 ENSG00000235976.2 processed_pseudogene Z80107.2 2 OTTHUMG00000022045.2 +63308 chrX HAVANA gene 102006883 102007294 412.0 + 0 ENSG00000226119.1 processed_pseudogene Z80107.1 1 OTTHUMG00000022046.1 pseudo_consens +63309 chrX HAVANA gene 102008524 102009046 523.0 - 0 ENSG00000234901.1 processed_pseudogene MTND6P13 2 OTTHUMG00000022047.1 +63310 chrX HAVANA gene 102125688 102127711 1666.0 + 0 ENSG00000184905.8 protein_coding TCEAL2 2 OTTHUMG00000022048.2 +63311 chrX HAVANA gene 102140476 102142970 1375.0 - 0 ENSG00000204071.10 protein_coding TCEAL6 2 OTTHUMG00000022050.1 +63312 chrX HAVANA gene 102153708 102156057 1063.0 - 0 ENSG00000184515.10 protein_coding BEX5 2 OTTHUMG00000022049.1 +63313 chrX HAVANA gene 102173100 102185021 1254.0 + 0 ENSG00000251525.6 transcribed_unprocessed_pseudogene TCP11X3P 2 OTTHUMG00000189498.1 +63314 chrX HAVANA gene 102215301 102229532 2055.0 + 0 ENSG00000268235.7 protein_coding TCP11X1 2 OTTHUMG00000022051.4 +63315 chrX HAVANA gene 102259043 102261692 1203.0 + 0 ENSG00000273746.1 unprocessed_pseudogene AC234791.1 2 OTTHUMG00000022052.2 overlapping_locus +63316 chrX HAVANA gene 102247161 102326719 2343.0 + 0 ENSG00000269405.6 protein_coding NXF2 2 OTTHUMG00000189320.1 +63317 chrX HAVANA gene 102425343 102428080 1416.0 - 0 ENSG00000231590.2 unitary_pseudogene AC235565.1 2 OTTHUMG00000152590.2 overlapping_locus +63318 chrX HAVANA gene 102360396 102439932 2597.0 - 0 ENSG00000269437.7 protein_coding NXF2B 2 OTTHUMG00000154920.2 overlapping_locus +63319 chrX HAVANA gene 102360395 102471812 4918.0 - 0 ENSG00000284800.1 protein_coding AC235565.2 2 OTTHUMG00000152591.4 overlapping_locus +63320 chrX HAVANA gene 102456862 102471842 2196.0 - 0 ENSG00000215029.9 protein_coding TCP11X2 2 OTTHUMG00000192406.1 overlapping_locus +63321 chrX HAVANA gene 102513676 102516784 685.0 - 0 ENSG00000158164.6 protein_coding TMSB15A 2 OTTHUMG00000022054.1 +63322 chrX HAVANA gene 102546734 102548213 1480.0 - 0 ENSG00000176318.8 processed_pseudogene FOXN3P1 1 OTTHUMG00000022055.2 pseudo_consens +63323 chrX HAVANA gene 102549965 102571695 3617.0 + 0 ENSG00000196970.8 transcribed_unprocessed_pseudogene NXF4 2 OTTHUMG00000039695.1 +63324 chrX HAVANA gene 102599168 102604159 4911.0 + 0 ENSG00000125962.14 protein_coding ARMCX5 2 OTTHUMG00000022062.3 overlapping_locus,retrogene +63325 chrX HAVANA gene 102615473 102615820 348.0 - 0 ENSG00000227211.2 processed_pseudogene AL035551.1 1 OTTHUMG00000022057.2 pseudo_consens,overlapping_locus +63326 chrX HAVANA gene 102651366 102659083 6340.0 + 0 ENSG00000198932.12 protein_coding GPRASP1 2 OTTHUMG00000022061.3 overlapping_locus,retrogene +63327 chrX HAVANA gene 102599657 102659712 387.0 - 0 ENSG00000270050.1 antisense AL035427.1 2 OTTHUMG00000183959.1 overlapping_locus +63328 chrX ENSEMBL gene 102678707 102678813 107.0 - 0 ENSG00000252294.1 snRNA RNU6-589P 3 +63329 chrX HAVANA gene 102705784 102706240 457.0 + 0 ENSG00000230320.1 processed_pseudogene BEND7P1 2 OTTHUMG00000022058.1 overlapping_locus +63330 chrX HAVANA gene 102599512 102714671 2711.0 + 0 ENSG00000271147.7 processed_transcript ARMCX5-GPRASP2 2 OTTHUMG00000022059.3 overlapping_locus +63331 chrX HAVANA gene 102712176 102717733 3975.0 + 0 ENSG00000158301.18 protein_coding GPRASP2 2 OTTHUMG00000185178.1 overlapping_locus,retrogene +63332 chrX HAVANA gene 102720688 102753540 5518.0 + 0 ENSG00000198908.11 protein_coding BHLHB9 2 OTTHUMG00000022060.2 +63333 chrX HAVANA gene 102785667 102786604 938.0 + 0 ENSG00000232282.1 processed_pseudogene MTND1P32 2 OTTHUMG00000022067.1 overlapping_locus +63334 chrX HAVANA gene 102786813 102788387 945.0 + 0 ENSG00000229954.1 processed_pseudogene MTND2P2 2 OTTHUMG00000022068.1 overlapping_locus +63335 chrX HAVANA gene 102796251 102797093 500.0 + 0 ENSG00000237300.2 processed_pseudogene MTCO1P19 2 OTTHUMG00000022069.2 overlapping_locus +63336 chrX HAVANA gene 102797531 102798128 598.0 + 0 ENSG00000237628.2 processed_pseudogene MTCO2P19 2 OTTHUMG00000022070.2 overlapping_locus +63337 chrX HAVANA gene 102798396 102799560 659.0 + 0 ENSG00000228316.1 processed_pseudogene MTATP6P19 2 OTTHUMG00000022071.1 overlapping_locus +63338 chrX HAVANA gene 102799563 102799883 321.0 + 0 ENSG00000224471.2 processed_pseudogene MTCO3P19 2 OTTHUMG00000022072.2 overlapping_locus +63339 chrX HAVANA gene 102799942 102801399 1237.0 + 0 ENSG00000226056.1 processed_pseudogene MTND4P32 2 OTTHUMG00000022063.1 overlapping_locus +63340 chrX HAVANA gene 102803041 102806138 1752.0 + 0 ENSG00000234886.1 processed_pseudogene MTND5P26 2 OTTHUMG00000022064.1 overlapping_locus +63341 chrX HAVANA gene 102806164 102806646 483.0 - 0 ENSG00000227649.1 processed_pseudogene MTND6P32 2 OTTHUMG00000022065.1 +63342 chrX HAVANA gene 102806741 102807824 1084.0 + 0 ENSG00000229794.2 processed_pseudogene MTCYBP32 2 OTTHUMG00000022066.2 overlapping_locus +63343 chrX HAVANA gene 102769161 102885406 4077.0 + 0 ENSG00000223546.6 lincRNA LINC00630 2 OTTHUMG00000022077.1 overlapping_locus +63344 chrX HAVANA gene 102884414 102906158 1133.0 + 0 ENSG00000239407.5 lincRNA Z68871.1 2 OTTHUMG00000022085.1 overlapping_locus +63345 chrX HAVANA gene 102937272 102938300 1029.0 + 0 ENSG00000102128.8 protein_coding RAB40AL 2 OTTHUMG00000022084.2 retrogene +63346 chrX HAVANA gene 102937770 102940561 628.0 - 0 ENSG00000234050.1 antisense Z95624.1 2 OTTHUMG00000022086.1 +63347 chrX HAVANA gene 103007461 103008072 612.0 + 0 ENSG00000224632.1 processed_pseudogene Z73361.1 1 OTTHUMG00000022087.1 pseudo_consens +63348 chrX HAVANA gene 103062651 103064240 864.0 - 0 ENSG00000133169.5 protein_coding BEX1 2 OTTHUMG00000022708.1 +63349 chrX HAVANA gene 103087198 103089277 2080.0 + 0 ENSG00000226241.2 processed_pseudogene Z75746.1 2 OTTHUMG00000022089.2 +63350 chrX HAVANA gene 103075810 103093125 3526.0 - 0 ENSG00000147206.16 protein_coding NXF3 2 OTTHUMG00000022088.2 +63351 chrX HAVANA gene 103206010 103206899 890.0 - 0 ENSG00000233071.3 processed_pseudogene RPSAP59 1 OTTHUMG00000022090.3 pseudo_consens +63352 chrX HAVANA gene 103215092 103217246 1328.0 + 0 ENSG00000102409.9 protein_coding BEX4 2 OTTHUMG00000022091.1 +63353 chrX HAVANA gene 103252995 103255203 1222.0 - 0 ENSG00000180964.16 protein_coding TCEAL8 2 OTTHUMG00000022094.2 +63354 chrX HAVANA gene 103258572 103259581 841.0 - 0 ENSG00000224692.1 processed_pseudogene Z68694.1 1 OTTHUMG00000022093.1 pseudo_consens +63355 chrX HAVANA gene 103273691 103276872 1168.0 - 0 ENSG00000204065.2 protein_coding TCEAL5 2 OTTHUMG00000022092.1 +63356 chrX HAVANA gene 103309346 103311046 1176.0 - 0 ENSG00000133134.11 protein_coding BEX2 2 OTTHUMG00000022095.3 +63357 chrX HAVANA gene 103330196 103332326 1177.0 + 0 ENSG00000182916.7 protein_coding TCEAL7 2 OTTHUMG00000022096.1 +63358 chrX HAVANA gene 103347462 103347729 268.0 - 0 ENSG00000238049.2 processed_pseudogene Z92846.1 2 OTTHUMG00000022098.1 +63359 chrX HAVANA gene 103356489 103358462 1974.0 + 0 ENSG00000185222.9 protein_coding TCEAL9 2 OTTHUMG00000192586.1 +63360 chrX HAVANA gene 103376340 103378077 1080.0 + 0 ENSG00000166681.13 protein_coding BEX3 2 OTTHUMG00000022099.1 +63361 chrX HAVANA gene 103404777 103408299 462.0 + 0 ENSG00000281091.2 lincRNA AL606763.1 2 OTTHUMG00000189758.1 +63362 chrX HAVANA gene 103497523 103500317 632.0 + 0 ENSG00000234405.1 antisense Z69733.1 2 OTTHUMG00000022102.1 +63363 chrX HAVANA gene 103499130 103519489 4018.0 - 0 ENSG00000172476.4 protein_coding RAB40A 2 OTTHUMG00000022100.2 retrogene +63364 chrX HAVANA gene 103576231 103587736 2518.0 + 0 ENSG00000133142.17 protein_coding TCEAL4 2 OTTHUMG00000022103.8 +63365 chrX HAVANA gene 103596608 103598904 2297.0 + 0 ENSG00000279894.1 TEC Z73965.1 2 OTTHUMG00000175537.1 +63366 chrX HAVANA gene 103626076 103626492 361.0 - 0 ENSG00000224031.1 antisense TCEAL3-AS1 2 OTTHUMG00000022105.1 +63367 chrX HAVANA gene 103607451 103629690 2305.0 + 0 ENSG00000196507.10 protein_coding TCEAL3 2 OTTHUMG00000022106.1 overlapping_locus +63368 chrX HAVANA gene 103628704 103630953 1602.0 + 0 ENSG00000172465.13 protein_coding TCEAL1 2 OTTHUMG00000022699.1 overlapping_locus +63369 chrX HAVANA gene 103651735 103652106 372.0 - 0 ENSG00000180284.5 processed_pseudogene AL049610.1 1 OTTHUMG00000022107.2 pseudo_consens +63370 chrX HAVANA gene 103675496 103688158 2648.0 - 0 ENSG00000123562.16 protein_coding MORF4L2 2 OTTHUMG00000022104.2 retrogene +63371 chrX HAVANA gene 103687284 103691772 2086.0 + 0 ENSG00000231154.1 antisense MORF4L2-AS1 2 OTTHUMG00000022108.2 +63372 chrX HAVANA gene 103710909 103714028 728.0 + 0 ENSG00000179363.6 protein_coding TMEM31 2 OTTHUMG00000022109.1 +63373 chrX HAVANA gene 103707224 103728655 2722.0 - 0 ENSG00000188828.11 protein_coding GLRA4 2 OTTHUMG00000022110.4 +63374 chrX HAVANA gene 103773718 103792619 6078.0 + 0 ENSG00000123560.13 protein_coding PLP1 2 OTTHUMG00000022111.5 +63375 chrX HAVANA gene 103822322 103832228 3748.0 - 0 ENSG00000123570.3 protein_coding RAB9B 2 OTTHUMG00000022112.1 retrogene +63376 chrX ENSEMBL gene 103850797 103850911 115.0 - 0 ENSG00000222419.1 rRNA_pseudogene RNA5SP511 3 +63377 chrX HAVANA gene 103904322 103904754 433.0 - 0 ENSG00000231787.4 processed_pseudogene AC234782.2 2 OTTHUMG00000022113.2 +63378 chrX HAVANA gene 103909126 103909449 324.0 + 0 ENSG00000276298.1 unprocessed_pseudogene AC234782.4 2 OTTHUMG00000188086.1 +63379 chrX HAVANA gene 103910305 103911352 1048.0 - 0 ENSG00000234345.2 processed_pseudogene AC234782.3 1 OTTHUMG00000022114.2 pseudo_consens +63380 chrX HAVANA gene 103917411 103919548 1311.0 - 0 ENSG00000231728.3 antisense TMSB15B-AS1 2 OTTHUMG00000022115.3 +63381 chrX HAVANA gene 103928099 103929017 919.0 + 0 ENSG00000230312.2 processed_pseudogene AC234782.1 2 OTTHUMG00000022116.2 overlapping_locus +63382 chrX HAVANA gene 103961811 103962279 469.0 - 0 ENSG00000227067.3 processed_pseudogene DPPA3P1 2 OTTHUMG00000022118.2 +63383 chrX HAVANA gene 103918896 103966712 5525.0 + 0 ENSG00000158427.14 protein_coding TMSB15B 2 OTTHUMG00000022117.4 +63384 chrX HAVANA gene 104011147 104013687 894.0 - 0 ENSG00000123569.8 protein_coding H2BFWT 2 OTTHUMG00000022120.3 +63385 chrX HAVANA gene 104039949 104042454 1882.0 + 0 ENSG00000101812.12 protein_coding H2BFM 2 OTTHUMG00000022122.2 +63386 chrX HAVANA gene 104062542 104063037 496.0 - 0 ENSG00000235946.1 processed_pseudogene AC234783.1 2 OTTHUMG00000022121.1 +63387 chrX HAVANA gene 104063871 104076212 3061.0 - 0 ENSG00000269226.7 protein_coding TMSB15B 2 OTTHUMG00000188508.2 +63388 chrX HAVANA gene 104112131 104115846 3389.0 + 0 ENSG00000166707.10 protein_coding ZCCHC18 2 OTTHUMG00000022123.4 +63389 chrX HAVANA gene 104099214 104157027 6845.0 - 0 ENSG00000269743.2 protein_coding SLC25A53 2 OTTHUMG00000022124.3 +63390 chrX HAVANA gene 104166620 104195902 7457.0 + 0 ENSG00000123575.8 protein_coding FAM199X 2 OTTHUMG00000022126.1 +63391 chrX HAVANA gene 104250038 104254933 1495.0 - 0 ENSG00000123576.5 protein_coding ESX1 2 OTTHUMG00000022125.2 +63392 chrX HAVANA gene 104647216 104647999 784.0 - 0 ENSG00000232665.2 processed_pseudogene PHBP10 1 OTTHUMG00000022127.2 pseudo_consens +63393 chrX HAVANA gene 104803915 104804440 526.0 + 0 ENSG00000223733.1 processed_pseudogene RPL18AP14 1 OTTHUMG00000022128.1 pseudo_consens,overlapping_locus +63394 chrX HAVANA gene 105218929 105220674 1377.0 - 0 ENSG00000268629.6 protein_coding TEX13A 2 OTTHUMG00000022133.3 +63395 chrX HAVANA gene 105405647 105407039 1013.0 + 0 ENSG00000181819.14 processed_pseudogene KCTD9P2 1 OTTHUMG00000022140.2 pseudo_consens,overlapping_locus +63396 chrX ENSEMBL gene 105676071 105676177 107.0 - 0 ENSG00000206864.1 snRNA RNU6-207P 3 +63397 chrX HAVANA gene 104566315 105767829 3147.0 + 0 ENSG00000189108.12 protein_coding IL1RAPL2 2 OTTHUMG00000022141.1 overlapping_locus +63398 chrX HAVANA gene 105822543 105958610 9573.0 + 0 ENSG00000123572.16 protein_coding NRK 2 OTTHUMG00000022143.9 +63399 chrX HAVANA gene 106032442 106038738 2744.0 - 0 ENSG00000123561.14 protein_coding SERPINA7 2 OTTHUMG00000022144.2 +63400 chrX HAVANA gene 106070481 106073202 1253.0 + 0 ENSG00000230788.2 processed_pseudogene AL512661.1 1 OTTHUMG00000022145.2 pseudo_consens +63401 chrX HAVANA gene 106168305 106208956 4343.0 + 0 ENSG00000157502.13 protein_coding MUM1L1 2 OTTHUMG00000022146.1 retrogene +63402 chrX HAVANA gene 106327534 106327824 291.0 + 0 ENSG00000256709.2 processed_pseudogene AL133271.1 2 OTTHUMG00000186882.1 +63403 chrX ENSEMBL gene 106426568 106426669 102.0 + 0 ENSG00000202407.1 misc_RNA RF00019 3 +63404 chrX HAVANA gene 106466542 106467440 899.0 - 0 ENSG00000224816.1 processed_pseudogene NAP1L4P2 1 OTTHUMG00000022148.1 pseudo_consens +63405 chrX HAVANA gene 106562774 106563404 631.0 - 0 ENSG00000227657.1 unprocessed_pseudogene SERPINA7P1 2 OTTHUMG00000022149.1 +63406 chrX HAVANA gene 106566021 106566161 141.0 + 0 ENSG00000277673.1 unprocessed_pseudogene AL590808.1 2 OTTHUMG00000188085.1 +63407 chrX ENSEMBL gene 106639814 106639896 83.0 + 0 ENSG00000263515.1 miRNA MIR548AN 3 +63408 chrX HAVANA gene 106611930 106679442 4853.0 + 0 ENSG00000147231.13 protein_coding CXorf57 2 OTTHUMG00000022150.3 ncRNA_host +63409 chrX HAVANA gene 106693794 106796993 3432.0 + 0 ENSG00000133135.13 protein_coding RNF128 2 OTTHUMG00000022151.2 +63410 chrX HAVANA gene 106802680 106876145 9503.0 + 0 ENSG00000133138.19 protein_coding TBC1D8B 2 OTTHUMG00000022152.4 +63411 chrX HAVANA gene 106900063 106903335 1190.0 - 0 ENSG00000147223.5 protein_coding RIPPLY1 2 OTTHUMG00000022153.2 overlapping_locus +63412 chrX HAVANA gene 106900164 106930861 3410.0 + 0 ENSG00000165376.10 protein_coding CLDN2 2 OTTHUMG00000022154.1 retrogene +63413 chrX HAVANA gene 106813871 107000244 6055.0 - 0 ENSG00000133131.14 protein_coding MORC4 2 OTTHUMG00000022155.4 overlapping_locus +63414 chrX HAVANA gene 107032248 107032820 573.0 + 0 ENSG00000231144.1 processed_pseudogene EEF1A1P40 1 OTTHUMG00000022157.1 pseudo_consens +63415 chrX HAVANA gene 107064420 107118823 6101.0 - 0 ENSG00000089682.16 protein_coding RBM41 2 OTTHUMG00000022156.4 +63416 chrX HAVANA gene 107131659 107132269 611.0 + 0 ENSG00000213569.4 processed_pseudogene AL390039.1 1 OTTHUMG00000022158.2 pseudo_consens +63417 chrX ENSEMBL gene 107202577 107202683 107.0 + 0 ENSG00000199832.1 misc_RNA RF00019 3 +63418 chrX HAVANA gene 107123427 107206433 1867.0 - 0 ENSG00000198088.10 protein_coding NUP62CL 2 OTTHUMG00000022159.4 +63419 chrX HAVANA gene 107206632 107244243 1931.0 + 0 ENSG00000080572.12 protein_coding PIH1D3 2 OTTHUMG00000022160.1 +63420 chrX HAVANA gene 107272582 107273656 1075.0 + 0 ENSG00000204053.6 processed_pseudogene MYCLP1 1 OTTHUMG00000022162.3 pseudo_consens +63421 chrX HAVANA gene 107351650 107352843 1194.0 - 0 ENSG00000215007.3 processed_pseudogene DNAJA1P3 1 OTTHUMG00000022161.2 pseudo_consens +63422 chrX HAVANA gene 107428630 107429461 832.0 + 0 ENSG00000214720.4 processed_pseudogene KRT18P49 1 OTTHUMG00000022163.2 pseudo_consens +63423 chrX HAVANA gene 107512983 107545821 457.0 - 0 ENSG00000227610.1 antisense FRMPD3-AS1 2 OTTHUMG00000022164.1 +63424 chrX HAVANA gene 107522450 107605251 9158.0 + 0 ENSG00000147234.10 protein_coding FRMPD3 2 OTTHUMG00000022165.2 +63425 chrX HAVANA gene 107628424 107651026 2280.0 + 0 ENSG00000147224.11 protein_coding PRPS1 2 OTTHUMG00000022167.2 +63426 chrX HAVANA gene 107713221 107777342 4766.0 - 0 ENSG00000157514.16 protein_coding TSC22D3 2 OTTHUMG00000022168.3 +63427 chrX HAVANA gene 107774899 107795829 2079.0 + 0 ENSG00000170935.7 protein_coding NCBP2L 2 OTTHUMG00000022169.5 retrogene +63428 chrX ENSEMBL gene 107901145 107901246 102.0 - 0 ENSG00000207363.1 misc_RNA RF00019 3 +63429 chrX HAVANA gene 107825755 107927193 3097.0 + 0 ENSG00000080561.13 protein_coding MID2 2 OTTHUMG00000022171.4 +63430 chrX HAVANA gene 107894597 107935980 2090.0 - 0 ENSG00000236064.1 antisense AL034399.2 2 OTTHUMG00000022173.1 ncRNA_host +63431 chrX HAVANA gene 107939263 107939642 380.0 - 0 ENSG00000225728.2 processed_pseudogene AL034399.1 1 OTTHUMG00000022172.2 pseudo_consens +63432 chrX HAVANA gene 107980864 107982370 1248.0 - 0 ENSG00000170925.3 protein_coding TEX13B 2 OTTHUMG00000022174.1 +63433 chrX HAVANA gene 107974078 107985008 1785.0 + 0 ENSG00000277883.1 unprocessed_pseudogene NLRP3P1 2 OTTHUMG00000188083.1 +63434 chrX HAVANA gene 108044970 108079184 3769.0 + 0 ENSG00000101842.13 protein_coding VSIG1 2 OTTHUMG00000022175.3 +63435 chrX HAVANA gene 108084207 108091618 2459.0 - 0 ENSG00000101843.18 protein_coding PSMD10 2 OTTHUMG00000022177.2 +63436 chrX HAVANA gene 108091668 108154671 2927.0 + 0 ENSG00000101844.17 protein_coding ATG4A 2 OTTHUMG00000022176.8 +63437 chrX HAVANA gene 108383398 108383993 477.0 + 0 ENSG00000189372.4 unprocessed_pseudogene AL034369.1 1 OTTHUMG00000022178.1 pseudo_consens +63438 chrX HAVANA gene 108155607 108439497 9282.0 - 0 ENSG00000197565.15 protein_coding COL4A6 2 OTTHUMG00000022179.2 +63439 chrX ENSEMBL gene 108676951 108677057 107.0 - 0 ENSG00000207146.1 misc_RNA RF00019 3 +63440 chrX HAVANA gene 108439844 108697545 8738.0 + 0 ENSG00000188153.13 protein_coding COL4A5 1 OTTHUMG00000022182.6 +63441 chrX HAVANA gene 108719949 108724944 4996.0 - 0 ENSG00000261409.1 sense_overlapping AL035425.3 2 OTTHUMG00000175497.1 overlapping_locus +63442 chrX HAVANA gene 108725886 108726948 1063.0 - 0 ENSG00000280322.1 TEC AL035425.4 2 OTTHUMG00000175499.1 overlapping_locus +63443 chrX HAVANA gene 108722070 108732687 563.0 - 0 ENSG00000260548.1 protein_coding AL035425.2 1 OTTHUMG00000175498.1 overlapping_locus +63444 chrX HAVANA gene 108732482 108736409 3928.0 - 0 ENSG00000133124.11 protein_coding IRS4 2 OTTHUMG00000022181.1 overlapping_locus +63445 chrX HAVANA gene 108736011 108738903 1498.0 + 0 ENSG00000237863.2 antisense AL035425.1 2 OTTHUMG00000022180.2 +63446 chrX ENSEMBL gene 108826764 108826869 106.0 + 0 ENSG00000201443.1 snRNA RNU6-309P 3 +63447 chrX ENSEMBL gene 109054542 109054590 49.0 + 0 ENSG00000275110.1 miRNA MIR6087 3 +63448 chrX HAVANA gene 109341813 109342697 885.0 + 0 ENSG00000215000.4 processed_pseudogene AL034403.1 1 OTTHUMG00000022183.1 pseudo_consens +63449 chrX HAVANA gene 109372906 109482072 3714.0 - 0 ENSG00000101890.4 protein_coding GUCY2F 2 OTTHUMG00000022184.1 +63450 chrX HAVANA gene 109535781 109544690 3064.0 + 0 ENSG00000101888.11 protein_coding NXT2 2 OTTHUMG00000022185.2 +63451 chrX HAVANA gene 109568478 109570289 1812.0 + 0 ENSG00000233874.2 processed_pseudogene AL118496.1 1 OTTHUMG00000022188.2 pseudo_consens +63452 chrX HAVANA gene 109623700 109625172 1473.0 - 0 ENSG00000176076.7 protein_coding KCNE5 2 OTTHUMG00000022189.1 overlapping_locus +63453 chrX HAVANA gene 109636834 109637063 230.0 + 0 ENSG00000237319.1 processed_pseudogene AL118496.2 2 OTTHUMG00000040035.1 +63454 chrX HAVANA gene 109624244 109733403 6415.0 - 0 ENSG00000068366.19 protein_coding ACSL4 2 OTTHUMG00000022190.6 overlapping_locus +63455 chrX ENSEMBL gene 109744643 109744749 107.0 - 0 ENSG00000252069.1 misc_RNA RF00019 3 +63456 chrX HAVANA gene 109853312 109853919 608.0 + 0 ENSG00000225381.2 processed_pseudogene RPS5P7 1 OTTHUMG00000022191.2 pseudo_consens +63457 chrX ENSEMBL gene 110055329 110055426 98.0 + 0 ENSG00000208013.3 miRNA MIR652 3 +63458 chrX ENSEMBL gene 110082118 110082218 101.0 + 0 ENSG00000265584.1 miRNA MIR3978 3 +63459 chrX HAVANA gene 110002631 110182734 6583.0 + 0 ENSG00000157600.11 protein_coding TMEM164 2 OTTHUMG00000022192.1 ncRNA_host +63460 chrX ENSEMBL gene 110224985 110225063 79.0 - 0 ENSG00000208883.1 snoRNA SNORD96B 3 +63461 chrX HAVANA gene 110305420 110307221 561.0 - 0 ENSG00000224142.1 sense_intronic AMMECR1-IT1 2 OTTHUMG00000022194.1 overlapping_locus +63462 chrX HAVANA gene 110346703 110346909 207.0 - 0 ENSG00000133136.4 processed_pseudogene GNG5P2 1 OTTHUMG00000022193.2 pseudo_consens +63463 chrX HAVANA gene 110194186 110440233 6516.0 - 0 ENSG00000101935.9 protein_coding AMMECR1 2 OTTHUMG00000022197.3 ncRNA_host,overlapping_locus +63464 chrX HAVANA gene 110358816 110456334 5529.0 + 0 ENSG00000243978.8 protein_coding RTL9 2 OTTHUMG00000022196.5 +63465 chrX HAVANA gene 110520312 110523021 2710.0 + 0 ENSG00000225366.4 transcribed_processed_pseudogene TDGF1P3 2 OTTHUMG00000022195.3 +63466 chrX HAVANA gene 110636841 110637672 832.0 + 0 ENSG00000228042.2 processed_pseudogene AL512882.1 1 OTTHUMG00000022198.2 pseudo_consens +63467 chrX HAVANA gene 110673856 110795819 3920.0 - 0 ENSG00000101938.14 protein_coding CHRDL1 2 OTTHUMG00000022199.3 +63468 chrX HAVANA gene 111169221 111169403 183.0 + 0 ENSG00000226112.1 processed_pseudogene FCF1P4 1 OTTHUMG00000022200.1 pseudo_consens,overlapping_locus +63469 chrX HAVANA gene 110944285 111227361 10312.0 + 0 ENSG00000077264.14 protein_coding PAK3 2 OTTHUMG00000022202.4 overlapping_locus +63470 chrX HAVANA gene 111229889 111231061 1173.0 - 0 ENSG00000234349.1 processed_pseudogene GLUD1P9 1 OTTHUMG00000022201.1 pseudo_consens +63471 chrX HAVANA gene 111245103 111270523 3568.0 - 0 ENSG00000077274.8 protein_coding CAPN6 2 OTTHUMG00000022203.1 +63472 chrX HAVANA gene 111293779 111412429 10203.0 - 0 ENSG00000077279.18 protein_coding DCX 1 OTTHUMG00000022204.7 +63473 chrX ENSEMBL gene 111421510 111421608 99.0 - 0 ENSG00000251954.1 snRNA RNU6-496P 3 +63474 chrX HAVANA gene 111434427 111435024 598.0 + 0 ENSG00000223904.2 processed_pseudogene HMGB1P12 1 OTTHUMG00000022205.2 pseudo_consens +63475 chrX HAVANA gene 111511662 111522399 4758.0 + 0 ENSG00000260802.1 protein_coding SERTM2 2 OTTHUMG00000173027.4 +63476 chrX HAVANA gene 111618808 111619094 287.0 + 0 ENSG00000229939.1 processed_pseudogene AL589880.1 2 OTTHUMG00000022207.1 +63477 chrX HAVANA gene 111619677 111621489 1813.0 - 0 ENSG00000225031.1 processed_pseudogene EIF4BP7 1 OTTHUMG00000022206.1 pseudo_consens +63478 chrX HAVANA gene 111624210 111624726 517.0 - 0 ENSG00000236189.2 processed_pseudogene RPL18AP15 1 OTTHUMG00000022208.2 pseudo_consens +63479 chrX ENSEMBL gene 111669829 111669948 120.0 - 0 ENSG00000201420.1 rRNA_pseudogene RNA5SP512 3 +63480 chrX HAVANA gene 111706649 111711101 195.0 - 0 ENSG00000229487.1 antisense ALG13-AS1 2 OTTHUMG00000067670.1 +63481 chrX HAVANA gene 111665811 111760649 8188.0 + 0 ENSG00000101901.11 protein_coding ALG13 2 OTTHUMG00000022209.16 +63482 chrX HAVANA gene 111876051 111903990 3019.0 + 0 ENSG00000204025.7 protein_coding TRPC5OS 2 OTTHUMG00000022211.3 +63483 chrX HAVANA gene 111930735 111931092 358.0 + 0 ENSG00000271421.1 processed_pseudogene AC005191.1 1 OTTHUMG00000185067.1 pseudo_consens +63484 chrX HAVANA gene 111774315 112082776 5839.0 - 0 ENSG00000072315.3 protein_coding TRPC5 2 OTTHUMG00000022212.1 +63485 chrX HAVANA gene 112319952 112320417 466.0 - 0 ENSG00000271464.1 processed_pseudogene DPRXP7 1 OTTHUMG00000185258.1 pseudo_consens +63486 chrX HAVANA gene 112381392 112382220 829.0 + 0 ENSG00000271400.1 processed_pseudogene AL392112.1 1 OTTHUMG00000185065.1 pseudo_consens +63487 chrX HAVANA gene 112454500 112457112 2613.0 + 0 ENSG00000187823.3 protein_coding RTL4 2 OTTHUMG00000159706.1 +63488 chrX ENSEMBL gene 112661657 112661768 112.0 + 0 ENSG00000200436.1 misc_RNA RF00019 3 +63489 chrX HAVANA gene 112630648 112680054 1750.0 - 0 ENSG00000182508.13 protein_coding LHFPL1 2 OTTHUMG00000022214.1 +63490 chrX HAVANA gene 112689915 112690520 606.0 + 0 ENSG00000213652.3 processed_pseudogene HMGB3P30 1 OTTHUMG00000022215.1 pseudo_consens +63491 chrX ENSEMBL gene 112780718 112780788 71.0 - 0 ENSG00000283775.1 miRNA MIR4329 3 +63492 chrX HAVANA gene 112774503 112840815 8502.0 - 0 ENSG00000126016.15 protein_coding AMOT 2 OTTHUMG00000022216.4 ncRNA_host +63493 chrX ENSEMBL gene 112855874 112856162 289.0 + 0 ENSG00000243011.3 misc_RNA RN7SL266P 3 +63494 chrX ENSEMBL gene 112919132 112919230 99.0 + 0 ENSG00000252930.1 snRNA RNU6-1015P 3 +63495 chrX HAVANA gene 113347413 113347619 207.0 + 0 ENSG00000235329.2 processed_pseudogene AL031183.1 2 OTTHUMG00000022218.2 +63496 chrX HAVANA gene 113522482 113522989 508.0 + 0 ENSG00000220541.4 processed_pseudogene AC233289.1 1 OTTHUMG00000022219.1 pseudo_consens +63497 chrX HAVANA gene 113882590 113883667 1078.0 + 0 ENSG00000270524.1 processed_pseudogene QTRT1P1 1 OTTHUMG00000184984.1 pseudo_consens +63498 chrX ENSEMBL gene 113944186 113944399 214.0 - 0 ENSG00000201674.2 snoRNA RF00012 3 +63499 chrX ENSEMBL gene 113949917 113950082 166.0 + 0 ENSG00000207220.1 snRNA RNU1-57P 3 +63500 chrX ENSEMBL gene 113976341 113976633 293.0 - 0 ENSG00000240327.3 misc_RNA RN7SL93P 3 +63501 chrX ENSEMBL gene 114017033 114017102 70.0 + 0 ENSG00000212611.1 snoRNA RF00088 3 +63502 chrX HAVANA gene 113616300 114059289 2891.0 - 0 ENSG00000241743.3 lincRNA XACT 2 OTTHUMG00000022220.4 ncRNA_host,overlapping_locus +63503 chrX HAVANA gene 114388988 114389155 168.0 - 0 ENSG00000230502.1 processed_pseudogene AL953862.1 2 OTTHUMG00000040049.1 +63504 chrX HAVANA gene 114389135 114389954 820.0 + 0 ENSG00000271686.1 processed_pseudogene AL953862.2 1 OTTHUMG00000185063.1 pseudo_consens +63505 chrX HAVANA gene 114390674 114391256 583.0 + 0 ENSG00000226547.2 processed_pseudogene SSU72P1 1 OTTHUMG00000022221.2 pseudo_consens +63506 chrX HAVANA gene 114589620 114589935 316.0 + 0 ENSG00000224664.2 processed_pseudogene RPL36AP53 1 OTTHUMG00000022222.2 pseudo_consens,overlapping_locus +63507 chrX ENSEMBL gene 114630797 114630924 128.0 + 0 ENSG00000208839.1 snoRNA SNORA35 3 +63508 chrX ENSEMBL gene 114639435 114639519 85.0 + 0 ENSG00000212100.2 miRNA MIR764 3 +63509 chrX ENSEMBL gene 114651544 114651623 80.0 + 0 ENSG00000222321.1 miRNA MIR1912 3 +63510 chrX ENSEMBL gene 114652655 114652723 69.0 + 0 ENSG00000276158.2 miRNA MIR1264 3 +63511 chrX ENSEMBL gene 114715233 114715344 112.0 + 0 ENSG00000221710.1 miRNA MIR1298 3 +63512 chrX ENSEMBL gene 114763184 114763263 80.0 + 0 ENSG00000222715.1 miRNA MIR1911 3 +63513 chrX HAVANA gene 114774828 114776775 1948.0 - 0 ENSG00000224773.2 processed_pseudogene HSPA8P7 1 OTTHUMG00000022224.3 pseudo_consens +63514 chrX ENSEMBL gene 114823454 114823564 111.0 + 0 ENSG00000199001.1 miRNA MIR448 3 +63515 chrX HAVANA gene 114900359 114900574 216.0 - 0 ENSG00000270413.1 processed_pseudogene AL355812.1 1 OTTHUMG00000185050.1 pseudo_consens +63516 chrX HAVANA gene 114584078 114910061 4842.0 + 0 ENSG00000147246.9 protein_coding HTR2C 2 OTTHUMG00000022226.3 ncRNA_host,overlapping_locus +63517 chrX HAVANA gene 115003975 115019977 1626.0 - 0 ENSG00000123496.7 protein_coding IL13RA2 2 OTTHUMG00000022229.1 +63518 chrX ENSEMBL gene 115032427 115032533 107.0 + 0 ENSG00000222122.1 snRNA RNU6-648P 3 +63519 chrX HAVANA gene 115063936 115064794 859.0 - 0 ENSG00000238223.1 processed_pseudogene AL121878.1 2 OTTHUMG00000022227.1 +63520 chrX HAVANA gene 115069237 115069846 610.0 + 0 ENSG00000236080.2 processed_pseudogene YAP1P2 1 OTTHUMG00000022228.1 pseudo_consens +63521 chrX ENSEMBL gene 115126316 115126444 129.0 - 0 ENSG00000271907.1 snoRNA SNORA35B 3 +63522 chrX ENSEMBL gene 115139030 115139123 94.0 - 0 ENSG00000212241.1 misc_RNA RF00019 3 +63523 chrX HAVANA gene 115189427 115192868 3442.0 + 0 ENSG00000175718.9 protein_coding RBMXL3 2 OTTHUMG00000022230.3 retrogene +63524 chrX HAVANA gene 115198432 115198749 318.0 + 0 ENSG00000235656.1 processed_pseudogene RPL36P18 1 OTTHUMG00000022231.1 pseudo_consens +63525 chrX HAVANA gene 115110616 115234072 4929.0 - 0 ENSG00000130224.14 protein_coding LRCH2 2 OTTHUMG00000022233.3 ncRNA_host +63526 chrX HAVANA gene 115289727 115307556 1727.0 + 0 ENSG00000102021.10 protein_coding LUZP4 2 OTTHUMG00000022234.2 +63527 chrX HAVANA gene 115424064 115425600 1165.0 - 0 ENSG00000274374.1 processed_pseudogene AC239600.2 1 OTTHUMG00000022235.3 pseudo_consens +63528 chrX HAVANA gene 115454733 115455194 462.0 - 0 ENSG00000271021.1 processed_pseudogene AC239600.1 1 OTTHUMG00000185051.1 pseudo_consens +63529 chrX ENSEMBL gene 115545637 115545717 81.0 + 0 ENSG00000252441.1 snoRNA RF00264 3 +63530 chrX HAVANA gene 115518182 115562731 2075.0 - 0 ENSG00000271826.5 antisense PLS3-AS1 2 OTTHUMG00000185326.2 +63531 chrX HAVANA gene 115561174 115650861 4099.0 + 0 ENSG00000102024.17 protein_coding PLS3 2 OTTHUMG00000022237.10 +63532 chrX HAVANA gene 115659713 115660022 310.0 + 0 ENSG00000270431.1 processed_pseudogene AC005000.2 1 OTTHUMG00000184988.1 pseudo_consens +63533 chrX HAVANA gene 115664895 115666133 1239.0 + 0 ENSG00000227881.1 processed_pseudogene ASS1P5 1 OTTHUMG00000022236.1 pseudo_consens +63534 chrX HAVANA gene 115702811 115704120 1310.0 + 0 ENSG00000234785.1 processed_pseudogene EEF1GP5 1 OTTHUMG00000022238.1 pseudo_consens +63535 chrX HAVANA gene 115718942 115719229 288.0 - 0 ENSG00000228532.4 processed_pseudogene AC005000.1 2 OTTHUMG00000022239.2 +63536 chrX HAVANA gene 115840964 115843050 446.0 + 0 ENSG00000229335.1 antisense DANT1 2 OTTHUMG00000033102.1 +63537 chrX HAVANA gene 115917271 115969089 2079.0 - 0 ENSG00000235244.3 lincRNA DANT2 2 OTTHUMG00000022240.1 +63538 chrX ENSEMBL gene 115992466 115992773 308.0 - 0 ENSG00000266828.2 misc_RNA RN7SL712P 3 +63539 chrX HAVANA gene 116043483 116044418 936.0 + 0 ENSG00000231371.1 processed_pseudogene AKR1B1P8 1 OTTHUMG00000022241.1 pseudo_consens +63540 chrX HAVANA gene 116106921 116108430 1510.0 - 0 ENSG00000234558.1 processed_pseudogene API5P1 1 OTTHUMG00000022242.1 pseudo_consens +63541 chrX HAVANA gene 116170722 116174972 2882.0 + 0 ENSG00000180772.6 protein_coding AGTR2 2 OTTHUMG00000022243.1 +63542 chrX ENSEMBL gene 116400848 116400953 106.0 - 0 ENSG00000207033.1 snRNA RNU6-154P 3 +63543 chrX HAVANA gene 116436622 116461458 4520.0 + 0 ENSG00000268104.2 protein_coding SLC6A14 2 OTTHUMG00000022245.3 +63544 chrX HAVANA gene 116461682 116463003 548.0 - 0 ENSG00000204019.4 protein_coding CT83 2 OTTHUMG00000022244.1 +63545 chrX HAVANA gene 116669810 116680303 957.0 - 0 ENSG00000236077.2 unprocessed_pseudogene BX119904.3 2 OTTHUMG00000022246.2 +63546 chrX HAVANA gene 116688870 116690185 301.0 + 0 ENSG00000237860.1 unprocessed_pseudogene BX119904.4 2 OTTHUMG00000022247.1 +63547 chrX HAVANA gene 116692910 116694188 512.0 - 0 ENSG00000230159.1 lincRNA BX119904.2 1 OTTHUMG00000022248.1 +63548 chrX HAVANA gene 116748530 116748877 348.0 - 0 ENSG00000224217.1 processed_pseudogene BX119904.1 1 OTTHUMG00000040051.1 pseudo_consens +63549 chrX ENSEMBL gene 116850839 116850945 107.0 - 0 ENSG00000206752.1 snRNA RNU6-1323P 3 +63550 chrX HAVANA gene 116963049 116963676 628.0 + 0 ENSG00000213526.3 processed_pseudogene SETP8 1 OTTHUMG00000022249.1 pseudo_consens +63551 chrX HAVANA gene 117397938 117398206 269.0 + 0 ENSG00000238066.1 processed_pseudogene AC005002.2 1 OTTHUMG00000022250.1 pseudo_consens +63552 chrX HAVANA gene 117399452 117400081 540.0 + 0 ENSG00000224314.1 processed_pseudogene AC005002.1 1 OTTHUMG00000022251.1 pseudo_consens +63553 chrX HAVANA gene 117894632 117895683 1052.0 - 0 ENSG00000279587.1 TEC AC006963.1 2 OTTHUMG00000175556.1 +63554 chrX ENSEMBL gene 117914244 117914345 102.0 - 0 ENSG00000200291.1 misc_RNA RF00019 3 +63555 chrX HAVANA gene 117897813 118117340 6983.0 - 0 ENSG00000003096.14 protein_coding KLHL13 2 OTTHUMG00000022252.4 ncRNA_host,overlapping_locus +63556 chrX HAVANA gene 118128748 118129018 271.0 + 0 ENSG00000237458.1 processed_pseudogene TUBB4BP3 2 OTTHUMG00000040068.1 +63557 chrX HAVANA gene 118146063 118146561 499.0 + 0 ENSG00000234524.1 processed_pseudogene RPL12P43 1 OTTHUMG00000040069.1 pseudo_consens +63558 chrX HAVANA gene 118278159 118283367 190.0 + 0 ENSG00000270619.1 processed_pseudogene AL391358.1 1 OTTHUMG00000185062.1 pseudo_consens +63559 chrX ENSEMBL gene 118386394 118386471 78.0 + 0 ENSG00000221463.3 miRNA MIR1277 3 +63560 chrX HAVANA gene 118346073 118449961 4202.0 + 0 ENSG00000131725.13 protein_coding WDR44 2 OTTHUMG00000022254.1 ncRNA_host +63561 chrX ENSEMBL gene 118569405 118569515 111.0 - 0 ENSG00000206862.1 misc_RNA RF00019 3 +63562 chrX HAVANA gene 118632375 118634218 1844.0 - 0 ENSG00000230399.1 processed_pseudogene RBBP8P1 1 OTTHUMG00000022255.1 pseudo_consens +63563 chrX HAVANA gene 118495898 118686163 6721.0 + 0 ENSG00000147251.15 protein_coding DOCK11 2 OTTHUMG00000022256.4 +63564 chrX ENSEMBL gene 118738055 118738182 128.0 + 0 ENSG00000239182.1 snoRNA RF00566 3 +63565 chrX HAVANA gene 118769796 118770857 1062.0 + 0 ENSG00000250995.1 processed_pseudogene AL391280.1 2 OTTHUMG00000022257.1 overlapping_locus +63566 chrX HAVANA gene 118727572 118794539 4372.0 + 0 ENSG00000131724.10 protein_coding IL13RA1 2 OTTHUMG00000022258.2 ncRNA_host,overlapping_locus +63567 chrX HAVANA gene 118823790 118826968 2231.0 + 0 ENSG00000174460.3 protein_coding ZCCHC12 2 OTTHUMG00000022261.1 +63568 chrX HAVANA gene 118877886 118879185 959.0 - 0 ENSG00000224341.1 processed_pseudogene AC006965.1 1 OTTHUMG00000022259.1 pseudo_consens +63569 chrX HAVANA gene 118839554 118919669 3861.0 + 0 ENSG00000203650.8 lincRNA LINC01285 2 OTTHUMG00000022260.3 +63570 chrX HAVANA gene 118938153 118939134 905.0 + 0 ENSG00000231270.1 processed_pseudogene AL772284.1 1 OTTHUMG00000022263.1 pseudo_consens +63571 chrX HAVANA gene 118974614 119018355 4041.0 + 0 ENSG00000175556.16 protein_coding LONRF3 2 OTTHUMG00000022262.6 +63572 chrX HAVANA gene 119073226 119076373 1147.0 + 0 ENSG00000277535.2 protein_coding AL772284.2 2 OTTHUMG00000188075.2 +63573 chrX HAVANA gene 119078635 119150579 7824.0 - 0 ENSG00000250423.2 protein_coding KIAA1210 2 OTTHUMG00000162980.2 +63574 chrX HAVANA gene 119186442 119186829 388.0 - 0 ENSG00000227864.1 processed_pseudogene ARL5AP1 1 OTTHUMG00000022265.1 pseudo_consens +63575 chrX HAVANA gene 119220782 119221742 961.0 + 0 ENSG00000230170.1 processed_pseudogene HNRNPA1P28 1 OTTHUMG00000022266.1 pseudo_consens +63576 chrX HAVANA gene 119222564 119223245 682.0 - 0 ENSG00000270625.1 processed_pseudogene AC004835.2 1 OTTHUMG00000185061.1 pseudo_consens +63577 chrX HAVANA gene 119236245 119244466 1919.0 + 0 ENSG00000101856.9 protein_coding PGRMC1 2 OTTHUMG00000022268.1 +63578 chrX HAVANA gene 119249346 119257667 2719.0 - 0 ENSG00000214992.6 unprocessed_pseudogene AKAP17BP 2 OTTHUMG00000022267.3 +63579 chrX HAVANA gene 119291529 119335610 2907.0 + 0 ENSG00000230392.1 lincRNA AC004835.1 2 OTTHUMG00000022271.1 +63580 chrX HAVANA gene 119379712 119380104 393.0 + 0 ENSG00000227814.3 processed_pseudogene MRPS17P9 1 OTTHUMG00000022270.2 pseudo_consens +63581 chrX HAVANA gene 119356301 119393595 635.0 - 0 ENSG00000226661.1 antisense AC004973.1 2 OTTHUMG00000022269.1 +63582 chrX HAVANA gene 119422917 119423547 433.0 + 0 ENSG00000237903.1 sense_intronic AC004000.1 2 OTTHUMG00000022274.1 overlapping_locus +63583 chrX ENSEMBL gene 119423742 119423905 164.0 + 0 ENSG00000207175.1 snRNA RNU1-67P 3 +63584 chrX ENSEMBL gene 119434519 119434820 302.0 + 0 ENSG00000266420.2 misc_RNA RN7SL118P 3 +63585 chrX HAVANA gene 119399060 119454478 3115.0 + 0 ENSG00000077713.18 protein_coding SLC25A43 2 OTTHUMG00000022272.1 ncRNA_host,overlapping_locus +63586 chrX ENSEMBL gene 119456558 119456658 101.0 + 0 ENSG00000252147.1 misc_RNA RNY3P16 3 +63587 chrX HAVANA gene 119466034 119469098 3065.0 - 0 ENSG00000224281.4 processed_transcript SLC25A5-AS1 2 OTTHUMG00000022273.2 +63588 chrX HAVANA gene 119468400 119471319 1500.0 + 0 ENSG00000005022.5 protein_coding SLC25A5 2 OTTHUMG00000022715.2 +63589 chrX HAVANA gene 119538149 119565408 2580.0 - 0 ENSG00000018610.14 protein_coding CXorf56 2 OTTHUMG00000022276.7 +63590 chrX HAVANA gene 119574467 119591083 5276.0 + 0 ENSG00000077721.15 protein_coding UBE2A 2 OTTHUMG00000022275.4 +63591 chrX HAVANA gene 119588337 119606443 4552.0 - 0 ENSG00000186416.14 protein_coding NKRF 2 OTTHUMG00000022277.2 +63592 chrX ENSEMBL gene 119646738 119646848 111.0 - 0 ENSG00000211578.3 miRNA MIR766 3 +63593 chrX HAVANA gene 119615724 119693370 6245.0 - 0 ENSG00000125354.22 protein_coding SEPT6 2 OTTHUMG00000022280.5 ncRNA_host +63594 chrX HAVANA gene 119693568 119696059 2492.0 + 0 ENSG00000279601.1 TEC AC005052.1 2 OTTHUMG00000175503.1 +63595 chrX HAVANA gene 119758613 119760164 1552.0 + 0 ENSG00000187808.4 protein_coding SOWAHD 2 OTTHUMG00000159606.1 +63596 chrX ENSEMBL gene 119787353 119787484 132.0 - 0 ENSG00000206622.1 snoRNA SNORA69 3 +63597 chrX HAVANA gene 119786504 119791643 2141.0 - 0 ENSG00000198918.7 protein_coding RPL39 2 OTTHUMG00000022278.1 ncRNA_host +63598 chrX HAVANA gene 119805311 119852998 3081.0 - 0 ENSG00000125351.11 protein_coding UPF3B 2 OTTHUMG00000022282.2 +63599 chrX HAVANA gene 119870475 119871827 1353.0 - 0 ENSG00000125352.5 protein_coding RNF113A 2 OTTHUMG00000022283.1 +63600 chrX HAVANA gene 119871487 119876662 766.0 + 0 ENSG00000125356.6 protein_coding NDUFA1 2 OTTHUMG00000022287.1 +63601 chrX HAVANA gene 119895837 119920716 1170.0 + 0 ENSG00000186471.12 protein_coding AKAP14 2 OTTHUMG00000022285.1 +63602 chrX HAVANA gene 119920672 119943772 7894.0 - 0 ENSG00000101882.9 protein_coding NKAP 2 OTTHUMG00000022284.3 +63603 chrX HAVANA gene 119942834 119992810 2669.0 + 0 ENSG00000282933.2 transcribed_unprocessed_pseudogene RHOXF1P3 2 OTTHUMG00000191483.3 +63604 chrX HAVANA gene 119998087 120000088 502.0 - 0 ENSG00000282850.2 unprocessed_pseudogene RHOXF1P2 2 OTTHUMG00000191484.2 +63605 chrX HAVANA gene 119978713 120025138 1626.0 - 0 ENSG00000234493.4 transcribed_unprocessed_pseudogene RHOXF1P1 1 OTTHUMG00000022289.4 +63606 chrX HAVANA gene 120070672 120077705 2864.0 - 0 ENSG00000203989.4 protein_coding RHOXF2B 2 OTTHUMG00000022288.4 +63607 chrX HAVANA gene 120109053 120115937 769.0 - 0 ENSG00000101883.4 protein_coding RHOXF1 2 OTTHUMG00000022290.2 +63608 chrX HAVANA gene 120117642 120119700 279.0 - 0 ENSG00000228139.1 lincRNA LINC01402 2 OTTHUMG00000022291.1 +63609 chrX HAVANA gene 120036236 120146854 2495.0 + 0 ENSG00000258545.5 antisense RHOXF1-AS1 2 OTTHUMG00000171158.1 +63610 chrX HAVANA gene 120158561 120165630 2900.0 + 0 ENSG00000131721.5 protein_coding RHOXF2 2 OTTHUMG00000022296.3 +63611 chrX HAVANA gene 120202061 120202748 688.0 - 0 ENSG00000227541.1 processed_pseudogene SFR1P1 1 OTTHUMG00000022293.1 pseudo_consens,overlapping_locus +63612 chrX HAVANA gene 120210461 120212680 1315.0 - 0 ENSG00000237757.2 processed_pseudogene EEF1A1P30 1 OTTHUMG00000022294.2 pseudo_consens,overlapping_locus +63613 chrX HAVANA gene 120120953 120245267 3222.0 - 0 ENSG00000233382.6 transcribed_processed_pseudogene NKAPP1 2 OTTHUMG00000022295.5 overlapping_locus +63614 chrX HAVANA gene 120250752 120258398 5313.0 + 0 ENSG00000177485.6 protein_coding ZBTB33 2 OTTHUMG00000171159.4 +63615 chrX HAVANA gene 120273127 120273526 400.0 + 0 ENSG00000232042.1 processed_pseudogene AL512286.1 1 OTTHUMG00000022297.1 pseudo_consens +63616 chrX HAVANA gene 120258650 120311556 3858.0 - 0 ENSG00000125355.15 protein_coding TMEM255A 2 OTTHUMG00000022298.3 +63617 chrX HAVANA gene 120362085 120383249 4773.0 + 0 ENSG00000101892.11 protein_coding ATP1B4 2 OTTHUMG00000022299.1 +63618 chrX HAVANA gene 120427827 120469365 5526.0 - 0 ENSG00000005893.15 protein_coding LAMP2 2 OTTHUMG00000022301.4 +63619 chrX ENSEMBL gene 120503037 120503096 60.0 - 0 ENSG00000251707.2 snRNA RNU7-37P 3 +63620 chrX HAVANA gene 120524609 120575794 7031.0 - 0 ENSG00000158290.16 protein_coding CUL4B 2 OTTHUMG00000022302.2 +63621 chrX HAVANA gene 120594010 120621074 2837.0 + 0 ENSG00000232119.7 protein_coding MCTS1 2 OTTHUMG00000022303.2 +63622 chrX HAVANA gene 120625793 120630150 1785.0 - 0 ENSG00000171155.7 protein_coding C1GALT1C1 2 OTTHUMG00000022305.1 +63623 chrX HAVANA gene 120709061 120709392 294.0 - 0 ENSG00000278317.1 processed_pseudogene AC011890.2 1 OTTHUMG00000188071.1 pseudo_consens +63624 chrX HAVANA gene 120733094 120733396 303.0 + 0 ENSG00000181511.5 processed_pseudogene AC011890.1 1 OTTHUMG00000022306.1 pseudo_consens +63625 chrX HAVANA gene 120868611 120869807 1197.0 - 0 ENSG00000237828.1 processed_pseudogene PA2G4P1 1 OTTHUMG00000022307.1 pseudo_consens +63626 chrX HAVANA gene 120872603 120875929 1328.0 - 0 ENSG00000236446.3 protein_coding CT47B1 2 OTTHUMG00000187483.3 +63627 chrX HAVANA gene 120876552 120876805 254.0 + 0 ENSG00000271346.1 processed_pseudogene AC008162.1 1 OTTHUMG00000184981.1 pseudo_consens +63628 chrX HAVANA gene 120877496 120878924 291.0 - 0 ENSG00000278646.1 protein_coding AC008162.2 2 OTTHUMG00000188842.1 +63629 chrX HAVANA gene 120930250 120932301 1165.0 - 0 ENSG00000226685.4 protein_coding CT47A12 2 OTTHUMG00000188843.2 +63630 chrX HAVANA gene 120932901 120933152 252.0 + 0 ENSG00000270678.1 processed_pseudogene AL670379.6 1 OTTHUMG00000184966.1 pseudo_consens +63631 chrX HAVANA gene 120933840 120937158 1294.0 - 0 ENSG00000226929.3 protein_coding CT47A11 2 OTTHUMG00000022310.2 +63632 chrX HAVANA gene 120937762 120938015 254.0 + 0 ENSG00000270493.1 processed_pseudogene AL670379.4 1 OTTHUMG00000184967.1 pseudo_consens +63633 chrX HAVANA gene 120938701 120942023 1298.0 - 0 ENSG00000224089.3 protein_coding CT47A10 2 OTTHUMG00000022309.2 +63634 chrX HAVANA gene 120942623 120942875 253.0 + 0 ENSG00000271154.1 processed_pseudogene AL670379.10 1 OTTHUMG00000184968.1 pseudo_consens +63635 chrX HAVANA gene 120943561 120946883 1298.0 - 0 ENSG00000226600.3 protein_coding CT47A9 2 OTTHUMG00000022319.2 +63636 chrX HAVANA gene 120947483 120947735 253.0 + 0 ENSG00000271041.1 processed_pseudogene AL670379.9 1 OTTHUMG00000184969.1 pseudo_consens +63637 chrX HAVANA gene 120948422 120951744 1298.0 - 0 ENSG00000230347.5 protein_coding CT47A8 2 OTTHUMG00000022318.2 +63638 chrX HAVANA gene 120952344 120952595 252.0 + 0 ENSG00000270397.1 processed_pseudogene AL670379.2 1 OTTHUMG00000184970.1 pseudo_consens +63639 chrX HAVANA gene 120953288 120956600 1288.0 - 0 ENSG00000228517.2 protein_coding CT47A7 2 OTTHUMG00000022317.1 +63640 chrX HAVANA gene 120957227 120957479 253.0 + 0 ENSG00000271502.1 processed_pseudogene AL670379.12 1 OTTHUMG00000184971.1 pseudo_consens +63641 chrX HAVANA gene 120958165 120961487 1298.0 - 0 ENSG00000226023.6 protein_coding CT47A6 2 OTTHUMG00000022316.2 +63642 chrX HAVANA gene 120962087 120962339 253.0 + 0 ENSG00000271211.1 processed_pseudogene AL670379.11 1 OTTHUMG00000184972.1 pseudo_consens +63643 chrX HAVANA gene 120963026 120966348 1298.0 - 0 ENSG00000237957.6 protein_coding CT47A5 2 OTTHUMG00000022315.2 +63644 chrX HAVANA gene 120966948 120967199 252.0 + 0 ENSG00000270736.1 processed_pseudogene AL670379.7 1 OTTHUMG00000184973.1 pseudo_consens +63645 chrX HAVANA gene 120967886 120971208 1298.0 - 0 ENSG00000230594.3 protein_coding CT47A4 2 OTTHUMG00000022314.2 +63646 chrX HAVANA gene 120971808 120972059 252.0 + 0 ENSG00000270771.1 processed_pseudogene AL670379.8 1 OTTHUMG00000184946.1 pseudo_consens +63647 chrX HAVANA gene 120972746 120976068 1298.0 - 0 ENSG00000236126.3 protein_coding CT47A3 2 OTTHUMG00000022313.2 +63648 chrX HAVANA gene 120976668 120976919 252.0 + 0 ENSG00000270646.1 processed_pseudogene AL670379.5 1 OTTHUMG00000184974.1 pseudo_consens +63649 chrX HAVANA gene 120977606 120980928 1298.0 - 0 ENSG00000242362.2 protein_coding CT47A2 2 OTTHUMG00000022312.2 +63650 chrX HAVANA gene 120981529 120981779 251.0 + 0 ENSG00000270456.1 processed_pseudogene AL670379.3 1 OTTHUMG00000184975.1 pseudo_consens +63651 chrX HAVANA gene 120982476 120985788 1288.0 - 0 ENSG00000236371.5 protein_coding CT47A1 2 OTTHUMG00000022311.3 +63652 chrX HAVANA gene 120986388 120986639 252.0 + 0 ENSG00000270251.1 processed_pseudogene AL670379.1 1 OTTHUMG00000184976.1 pseudo_consens +63653 chrX HAVANA gene 121024964 121026563 1600.0 - 0 ENSG00000233433.1 processed_pseudogene AC006144.1 1 OTTHUMG00000022321.1 pseudo_consens +63654 chrX HAVANA gene 121047588 121050080 2493.0 + 0 ENSG00000182890.4 protein_coding GLUD2 2 OTTHUMG00000022320.1 retrogene +63655 chrX HAVANA gene 121203182 121205014 1833.0 - 0 ENSG00000234176.1 processed_pseudogene HSPA8P1 1 OTTHUMG00000022322.1 pseudo_consens +63656 chrX ENSEMBL gene 121370972 121371053 82.0 + 0 ENSG00000265456.1 miRNA MIR3672 3 +63657 chrX HAVANA gene 121863698 121864196 499.0 - 0 ENSG00000213498.3 processed_pseudogene TPT1P13 1 OTTHUMG00000022323.1 pseudo_consens +63658 chrX HAVANA gene 121871869 121876865 4997.0 + 0 ENSG00000260585.1 lincRNA AL359851.1 2 OTTHUMG00000176478.1 +63659 chrX HAVANA gene 122010976 122011612 251.0 - 0 ENSG00000237891.1 processed_pseudogene AL441985.1 1 OTTHUMG00000022324.1 pseudo_consens +63660 chrX HAVANA gene 122242008 122242616 609.0 + 0 ENSG00000280142.1 TEC AL357562.1 2 OTTHUMG00000175550.1 +63661 chrX HAVANA gene 122538253 122539460 1208.0 + 0 ENSG00000232496.2 processed_pseudogene RPL3P12 1 OTTHUMG00000022325.2 pseudo_consens +63662 chrX ENSEMBL gene 122840426 122840645 220.0 + 0 ENSG00000212321.2 snoRNA RF00012 3 +63663 chrX HAVANA gene 123116107 123117781 1675.0 - 0 ENSG00000224236.3 processed_pseudogene MRRFP1 1 OTTHUMG00000022326.1 pseudo_consens +63664 chrX HAVANA gene 123184153 123490915 6484.0 + 0 ENSG00000125675.17 protein_coding GRIA3 2 OTTHUMG00000022685.3 +63665 chrX HAVANA gene 123514473 123514872 400.0 + 0 ENSG00000179101.5 processed_pseudogene AL590139.1 1 OTTHUMG00000022327.1 pseudo_consens +63666 chrX HAVANA gene 123558350 123558584 235.0 + 0 ENSG00000229733.1 processed_pseudogene AL030996.1 1 OTTHUMG00000040087.1 pseudo_consens +63667 chrX HAVANA gene 123561642 123562966 1325.0 + 0 ENSG00000228466.1 processed_pseudogene TUBB4AP1 1 OTTHUMG00000022330.4 pseudo_consens +63668 chrX HAVANA gene 123603139 123603931 793.0 + 0 ENSG00000232149.1 processed_pseudogene FERP1 2 OTTHUMG00000022329.2 +63669 chrX HAVANA gene 123600561 123733056 10277.0 - 0 ENSG00000125676.19 protein_coding THOC2 1 OTTHUMG00000022334.20 +63670 chrX HAVANA gene 123765301 123765686 386.0 + 0 ENSG00000230376.1 processed_pseudogene MEMO1P4 1 OTTHUMG00000022332.6 pseudo_consens +63671 chrX ENSEMBL gene 123772078 123772139 62.0 - 0 ENSG00000252178.1 snRNA RNU7-69P 3 +63672 chrX HAVANA gene 123785009 123785451 443.0 + 0 ENSG00000226902.1 processed_pseudogene CHCHD2P1 1 OTTHUMG00000022333.6 pseudo_consens +63673 chrX ENSEMBL gene 123811331 123811587 257.0 - 0 ENSG00000264933.2 misc_RNA RN7SL190P 3 +63674 chrX ENSEMBL gene 123857062 123857163 102.0 - 0 ENSG00000199705.1 misc_RNA RF00019 3 +63675 chrX HAVANA gene 123872626 123873932 482.0 - 0 ENSG00000237331.1 antisense XIAP-AS1 2 OTTHUMG00000022339.5 +63676 chrX ENSEMBL gene 123874459 123874565 107.0 + 0 ENSG00000252627.1 snRNA RNU6-122P 3 +63677 chrX HAVANA gene 123878590 123879296 707.0 - 0 ENSG00000237025.1 processed_pseudogene AL121601.2 2 OTTHUMG00000022337.1 +63678 chrX HAVANA gene 123859724 123913979 9025.0 + 0 ENSG00000101966.12 protein_coding XIAP 2 OTTHUMG00000022336.8 ncRNA_host +63679 chrX HAVANA gene 123959233 123961341 326.0 - 0 ENSG00000232412.1 lincRNA AL121601.1 1 OTTHUMG00000022338.2 +63680 chrX HAVANA gene 124173001 124174459 1459.0 - 0 ENSG00000237426.1 processed_pseudogene ZIK1P1 2 OTTHUMG00000022340.1 +63681 chrX ENSEMBL gene 124197743 124197849 107.0 + 0 ENSG00000252693.1 snoRNA RF00561 3 +63682 chrX HAVANA gene 124204499 124205806 1007.0 - 0 ENSG00000234564.1 processed_pseudogene HSPA8P20 1 OTTHUMG00000022341.1 pseudo_consens +63683 chrX HAVANA gene 124280530 124281422 893.0 + 0 ENSG00000232054.1 processed_pseudogene NPM1P34 1 OTTHUMG00000022342.1 pseudo_consens,overlapping_locus +63684 chrX HAVANA gene 124326175 124326258 84.0 - 0 ENSG00000226532.1 processed_pseudogene AL022718.1 2 OTTHUMG00000040093.1 +63685 chrX HAVANA gene 124246249 124336862 4292.0 + 0 ENSG00000282419.2 protein_coding TEX13D 2 OTTHUMG00000190648.4 overlapping_locus +63686 chrX HAVANA gene 124227868 124373197 2990.0 + 0 ENSG00000183918.16 protein_coding SH2D1A 2 OTTHUMG00000022344.6 overlapping_locus +63687 chrX HAVANA gene 123960212 124422664 8187.0 + 0 ENSG00000101972.18 protein_coding STAG2 2 OTTHUMG00000022725.13 ncRNA_host,overlapping_locus +63688 chrX HAVANA gene 124688504 124688838 335.0 - 0 ENSG00000236880.1 processed_pseudogene Z85995.1 1 OTTHUMG00000022345.1 pseudo_consens,overlapping_locus +63689 chrX HAVANA gene 124375903 124963817 12896.0 - 0 ENSG00000009694.13 protein_coding TENM1 2 OTTHUMG00000022721.1 overlapping_locus +63690 chrX HAVANA gene 125203805 125204338 534.0 - 0 ENSG00000232599.1 processed_pseudogene AL008707.1 2 OTTHUMG00000022346.1 +63691 chrX HAVANA gene 125320120 125325214 5095.0 + 0 ENSG00000282815.1 protein_coding TEX13C 2 OTTHUMG00000191426.1 +63692 chrX HAVANA gene 125326897 125328021 1125.0 - 0 ENSG00000213489.3 processed_pseudogene AL627231.1 1 OTTHUMG00000022347.2 pseudo_consens +63693 chrX HAVANA gene 126004446 126006118 1673.0 - 0 ENSG00000280223.1 TEC AL645820.1 2 OTTHUMG00000175564.1 +63694 chrX HAVANA gene 126109762 126115562 639.0 + 0 ENSG00000237208.1 lincRNA AL445072.1 2 OTTHUMG00000022349.1 +63695 chrX HAVANA gene 126163499 126166097 2599.0 - 0 ENSG00000198354.6 protein_coding DCAF12L2 2 OTTHUMG00000022348.2 retrogene +63696 chrX HAVANA gene 126471705 126472403 699.0 + 0 ENSG00000230916.2 processed_pseudogene MTCO1P53 2 OTTHUMG00000022350.3 +63697 chrX HAVANA gene 126472728 126472884 157.0 + 0 ENSG00000231501.1 processed_pseudogene MTND4LP1 2 OTTHUMG00000022351.3 +63698 chrX HAVANA gene 126472885 126473281 397.0 + 0 ENSG00000232177.1 processed_pseudogene MTND4P24 2 OTTHUMG00000022352.1 +63699 chrX HAVANA gene 126502867 126503155 289.0 - 0 ENSG00000274901.2 unprocessed_pseudogene Z69908.1 2 OTTHUMG00000188060.2 +63700 chrX HAVANA gene 126549383 126552851 3382.0 - 0 ENSG00000198889.4 protein_coding DCAF12L1 2 OTTHUMG00000022353.2 retrogene +63701 chrX HAVANA gene 126729104 126730226 1123.0 + 0 ENSG00000226414.1 processed_pseudogene MTCYBP38 2 OTTHUMG00000022354.1 +63702 chrX HAVANA gene 126819764 126821786 1228.0 + 0 ENSG00000183631.4 protein_coding PRR32 2 OTTHUMG00000022355.1 +63703 chrX HAVANA gene 127390342 127392526 2135.0 + 0 ENSG00000230538.1 processed_pseudogene Z82209.1 1 OTTHUMG00000022356.1 pseudo_consens +63704 chrX HAVANA gene 127392760 127394771 2012.0 + 0 ENSG00000280275.1 TEC Z82209.2 2 OTTHUMG00000175563.1 +63705 chrX HAVANA gene 127623410 127623530 121.0 - 0 ENSG00000274631.1 processed_pseudogene AL662814.1 2 OTTHUMG00000188063.1 +63706 chrX HAVANA gene 127660631 127662530 1900.0 - 0 ENSG00000260683.1 lincRNA AL591643.1 2 OTTHUMG00000175443.1 +63707 chrX HAVANA gene 127728734 127730858 1167.0 - 0 ENSG00000235274.1 processed_pseudogene Z75741.2 1 OTTHUMG00000022357.1 pseudo_consens +63708 chrX HAVANA gene 127796124 127796733 314.0 + 0 ENSG00000224548.1 processed_pseudogene Z75741.1 1 OTTHUMG00000022358.1 pseudo_consens +63709 chrX HAVANA gene 128050962 128052398 1437.0 - 0 ENSG00000123165.8 protein_coding ACTRT1 2 OTTHUMG00000022359.1 retrogene +63710 chrX HAVANA gene 128098032 128098529 498.0 - 0 ENSG00000236042.2 processed_pseudogene Z74696.2 2 OTTHUMG00000022360.2 +63711 chrX HAVANA gene 128122734 128123496 716.0 + 0 ENSG00000235334.1 processed_pseudogene BTG3P1 1 OTTHUMG00000022361.1 pseudo_consens +63712 chrX HAVANA gene 128127090 128128212 1123.0 - 0 ENSG00000235239.1 processed_pseudogene Z74696.1 1 OTTHUMG00000022362.1 pseudo_consens +63713 chrX HAVANA gene 128313281 128314048 768.0 + 0 ENSG00000235735.1 processed_pseudogene RPL7AP72 1 OTTHUMG00000022363.1 pseudo_consens +63714 chrX HAVANA gene 128440929 128441785 857.0 + 0 ENSG00000226802.1 processed_pseudogene AL442647.2 1 OTTHUMG00000022364.1 pseudo_consens +63715 chrX HAVANA gene 128323620 128600468 481.0 - 0 ENSG00000225689.1 lincRNA AL442647.1 2 OTTHUMG00000022365.1 +63716 chrX HAVANA gene 128714506 128715790 1285.0 + 0 ENSG00000218728.3 processed_pseudogene KRT18P44 1 OTTHUMG00000022366.2 pseudo_consens +63717 chrX HAVANA gene 128838441 128838834 394.0 - 0 ENSG00000223995.2 processed_pseudogene RPL32P35 1 OTTHUMG00000022367.2 pseudo_consens +63718 chrX HAVANA gene 129041536 129043183 1648.0 - 0 ENSG00000234592.1 processed_pseudogene AL359845.1 1 OTTHUMG00000022368.1 pseudo_consens +63719 chrX HAVANA gene 129408382 129408621 240.0 + 0 ENSG00000226339.1 processed_pseudogene RPS26P56 1 OTTHUMG00000022369.1 pseudo_consens +63720 chrX ENSEMBL gene 129436530 129436647 118.0 - 0 ENSG00000201518.1 rRNA_pseudogene RNA5SP513 3 +63721 chrX ENSEMBL gene 129518576 129518647 72.0 + 0 ENSG00000252170.2 snoRNA RF01169 3 +63722 chrX HAVANA gene 129446501 129523500 4363.0 - 0 ENSG00000102038.15 protein_coding SMARCA1 2 OTTHUMG00000022370.4 +63723 chrX HAVANA gene 129539849 129592561 5779.0 + 0 ENSG00000122126.16 protein_coding OCRL 2 OTTHUMG00000022706.4 +63724 chrX HAVANA gene 129645259 129654937 3205.0 - 0 ENSG00000171388.11 protein_coding APLN 2 OTTHUMG00000022371.2 +63725 chrX HAVANA gene 129738974 129769538 3500.0 + 0 ENSG00000122121.10 protein_coding XPNPEP2 2 OTTHUMG00000022373.1 +63726 chrX HAVANA gene 129779979 129795201 2711.0 + 0 ENSG00000122122.9 protein_coding SASH3 2 OTTHUMG00000022372.1 overlapping_locus +63727 chrX ENSEMBL gene 129796491 129796783 293.0 - 0 ENSG00000275070.1 misc_RNA RF00017 3 +63728 chrX HAVANA gene 129794994 129796963 326.0 + 0 ENSG00000240143.1 3prime_overlapping_ncRNA AL023653.1 1 OTTHUMG00000022374.1 overlapping_locus +63729 chrX HAVANA gene 129803288 129843909 5243.0 - 0 ENSG00000188706.12 protein_coding ZDHHC9 2 OTTHUMG00000022375.2 +63730 chrX HAVANA gene 129871309 129877567 2910.0 + 0 ENSG00000238040.1 processed_pseudogene SALL4P2 2 OTTHUMG00000022376.1 +63731 chrX HAVANA gene 129906121 129929761 4087.0 + 0 ENSG00000156697.12 protein_coding UTP14A 2 OTTHUMG00000022378.2 +63732 chrX HAVANA gene 129869064 129957528 526.0 - 0 ENSG00000235189.1 antisense AL034405.1 1 OTTHUMG00000022377.1 +63733 chrX HAVANA gene 129981107 130058083 7996.0 + 0 ENSG00000085185.15 protein_coding BCORL1 2 OTTHUMG00000022379.7 +63734 chrX HAVANA gene 130064874 130110716 4316.0 - 0 ENSG00000102034.16 protein_coding ELF4 2 OTTHUMG00000022390.2 +63735 chrX HAVANA gene 130129362 130165887 3306.0 - 0 ENSG00000156709.13 protein_coding AIFM1 2 OTTHUMG00000022392.4 +63736 chrX HAVANA gene 130171649 130184870 1258.0 + 0 ENSG00000134594.4 protein_coding RAB33A 2 OTTHUMG00000022391.1 +63737 chrX HAVANA gene 130202711 130268899 4634.0 - 0 ENSG00000056277.15 protein_coding ZNF280C 2 OTTHUMG00000022393.2 +63738 chrX ENSEMBL gene 130310072 130310178 107.0 - 0 ENSG00000202304.1 snRNA RNU6-1130P 3 +63739 chrX HAVANA gene 130330857 130331069 213.0 + 0 ENSG00000225046.2 processed_pseudogene AL035423.1 1 OTTHUMG00000022396.2 pseudo_consens +63740 chrX HAVANA gene 130339888 130373361 3009.0 + 0 ENSG00000102078.15 protein_coding SLC25A14 2 OTTHUMG00000022394.2 +63741 chrX HAVANA gene 130384440 130385447 1008.0 - 0 ENSG00000147262.3 protein_coding GPR119 2 OTTHUMG00000022397.2 +63742 chrX HAVANA gene 130401969 130413343 2491.0 + 0 ENSG00000134597.15 protein_coding RBMX2 2 OTTHUMG00000022395.1 +63743 chrX HAVANA gene 130494965 130496588 1624.0 + 0 ENSG00000221930.6 transcribed_processed_pseudogene FAM45BP 2 OTTHUMG00000022399.3 +63744 chrX HAVANA gene 130445085 130524257 19907.0 - 0 ENSG00000274775.2 transcribed_unprocessed_pseudogene Z82195.2 2 OTTHUMG00000188056.2 +63745 chrX HAVANA gene 130545586 130546474 398.0 + 0 ENSG00000271677.1 unprocessed_pseudogene Z82195.1 1 OTTHUMG00000185094.2 pseudo_consens +63746 chrX HAVANA gene 130645723 130646325 603.0 + 0 ENSG00000238188.1 processed_pseudogene AL049733.1 1 OTTHUMG00000022400.1 pseudo_consens +63747 chrX HAVANA gene 130623369 130903317 4279.0 - 0 ENSG00000165675.16 protein_coding ENOX2 2 OTTHUMG00000022401.2 +63748 chrX HAVANA gene 130981590 131058146 561.0 - 0 ENSG00000228659.1 antisense LINC01201 2 OTTHUMG00000022403.1 +63749 chrX HAVANA gene 131058242 131089883 3173.0 + 0 ENSG00000147256.11 protein_coding ARHGAP36 1 OTTHUMG00000022402.3 +63750 chrX ENSEMBL gene 131134086 131134390 305.0 - 0 ENSG00000241198.3 misc_RNA RN7SL191P 3 +63751 chrX HAVANA gene 131204068 131205010 943.0 + 0 ENSG00000237650.2 unprocessed_pseudogene OR11Q1P 2 OTTHUMG00000022404.2 +63752 chrX HAVANA gene 131221196 131221436 241.0 - 0 ENSG00000276205.1 unprocessed_pseudogene AL603758.1 2 OTTHUMG00000188052.1 +63753 chrX HAVANA gene 131324391 131325313 923.0 - 0 ENSG00000185903.10 unprocessed_pseudogene OR11N1P 2 OTTHUMG00000022405.2 +63754 chrX HAVANA gene 131341570 131342425 856.0 - 0 ENSG00000229082.2 unprocessed_pseudogene OR5AW1P 2 OTTHUMG00000153220.2 +63755 chrX HAVANA gene 131398072 131398957 886.0 - 0 ENSG00000242610.2 unprocessed_pseudogene OR5BH1P 2 OTTHUMG00000022407.2 +63756 chrX HAVANA gene 131424301 131425239 939.0 + 0 ENSG00000234288.2 unprocessed_pseudogene OR1AA1P 2 OTTHUMG00000022408.2 +63757 chrX HAVANA gene 131437055 131437670 616.0 - 0 ENSG00000230973.1 processed_pseudogene AL049734.2 2 OTTHUMG00000022409.1 +63758 chrX HAVANA gene 131492279 131492886 608.0 - 0 ENSG00000228450.2 processed_pseudogene AL049734.1 1 OTTHUMG00000022410.2 pseudo_consens +63759 chrX HAVANA gene 131543976 131545056 1081.0 + 0 ENSG00000171054.8 protein_coding OR13H1 2 OTTHUMG00000022411.3 +63760 chrX HAVANA gene 131562729 131563846 1118.0 + 0 ENSG00000237225.2 unprocessed_pseudogene OR13K1P 1 OTTHUMG00000022412.2 pseudo_consens +63761 chrX HAVANA gene 131273506 131578899 7051.0 - 0 ENSG00000147255.18 protein_coding IGSF1 2 OTTHUMG00000022406.2 +63762 chrX HAVANA gene 131596121 131596987 526.0 + 0 ENSG00000232787.2 unprocessed_pseudogene OR7L1P 2 OTTHUMG00000022413.2 +63763 chrX HAVANA gene 131619013 131619951 939.0 + 0 ENSG00000235730.2 unprocessed_pseudogene OR2AF1P 2 OTTHUMG00000022414.2 +63764 chrX HAVANA gene 131646639 131646890 252.0 + 0 ENSG00000227183.3 processed_pseudogene HDGFP1 1 OTTHUMG00000022415.3 pseudo_consens +63765 chrX HAVANA gene 131795657 131796167 511.0 - 0 ENSG00000241418.1 processed_pseudogene MCRIP2P1 1 OTTHUMG00000022416.1 pseudo_consens +63766 chrX HAVANA gene 131803312 131803741 430.0 - 0 ENSG00000228089.1 processed_pseudogene PNKDP1 1 OTTHUMG00000022418.1 pseudo_consens,overlapping_locus +63767 chrX HAVANA gene 131688779 131830643 9262.0 - 0 ENSG00000213468.6 processed_transcript FIRRE 2 OTTHUMG00000022417.5 overlapping_locus +63768 chrX HAVANA gene 131937670 131937853 184.0 + 0 ENSG00000235190.1 processed_pseudogene AL008629.1 1 OTTHUMG00000022419.1 pseudo_consens +63769 chrX ENSEMBL gene 131938846 131938956 111.0 - 0 ENSG00000200587.1 rRNA_pseudogene RNA5SP514 3 +63770 chrX HAVANA gene 132023265 132075943 3354.0 + 0 ENSG00000134602.15 protein_coding STK26 1 OTTHUMG00000022420.2 +63771 chrX HAVANA gene 132076993 132128020 3324.0 - 0 ENSG00000165694.9 protein_coding FRMD7 2 OTTHUMG00000022421.3 +63772 chrX HAVANA gene 132130091 132131352 1262.0 - 0 ENSG00000228819.1 processed_pseudogene AL049792.1 1 OTTHUMG00000022423.1 pseudo_consens +63773 chrX HAVANA gene 132203024 132219480 4118.0 - 0 ENSG00000123728.9 protein_coding RAP2C 2 OTTHUMG00000022424.1 +63774 chrX HAVANA gene 132217147 132432862 3536.0 + 0 ENSG00000232160.6 antisense RAP2C-AS1 1 OTTHUMG00000022425.2 +63775 chrX HAVANA gene 132369317 132489968 12199.0 - 0 ENSG00000076770.14 protein_coding MBNL3 2 OTTHUMG00000022426.5 +63776 chrX ENSEMBL gene 132580117 132580223 107.0 - 0 ENSG00000206900.1 snRNA RNU6-98P 3 +63777 chrX HAVANA gene 132667642 132669888 550.0 + 0 ENSG00000235849.1 antisense HS6ST2-AS1 1 OTTHUMG00000022427.1 +63778 chrX HAVANA gene 132907279 132907575 297.0 - 0 ENSG00000227064.1 processed_pseudogene Z82205.1 1 OTTHUMG00000022428.1 pseudo_consens,overlapping_locus +63779 chrX HAVANA gene 132626016 132961395 5002.0 - 0 ENSG00000171004.18 protein_coding HS6ST2 2 OTTHUMG00000022430.8 overlapping_locus +63780 chrX HAVANA gene 133024631 133097109 4145.0 - 0 ENSG00000134588.12 protein_coding USP26 2 OTTHUMG00000022429.3 retrogene +63781 chrX HAVANA gene 133141300 133143940 1175.0 - 0 ENSG00000225949.1 processed_pseudogene Z77249.1 1 OTTHUMG00000022432.1 pseudo_consens +63782 chrX ENSEMBL gene 133152754 133152892 139.0 + 0 ENSG00000207100.1 snoRNA RF00393 3 +63783 chrX HAVANA gene 133216669 133218348 1680.0 - 0 ENSG00000183434.9 protein_coding TFDP3 2 OTTHUMG00000022433.1 retrogene +63784 chrX ENSEMBL gene 133238657 133238816 160.0 - 0 ENSG00000202199.1 snRNA RNU1-115P 3 +63785 chrX HAVANA gene 133300103 133415490 4960.0 - 0 ENSG00000076716.8 protein_coding GPC4 2 OTTHUMG00000022434.1 +63786 chrX ENSEMBL gene 133531723 133531826 104.0 - 0 ENSG00000206765.1 snRNA RNU6-203P 3 +63787 chrX HAVANA gene 133670971 133671386 416.0 + 0 ENSG00000227008.2 processed_pseudogene AL009174.1 1 OTTHUMG00000022439.1 pseudo_consens +63788 chrX HAVANA gene 133762796 133763683 888.0 + 0 ENSG00000233260.1 processed_pseudogene RPSAP63 1 OTTHUMG00000022445.1 pseudo_consens +63789 chrX HAVANA gene 133535745 133985895 2711.0 - 0 ENSG00000147257.13 protein_coding GPC3 2 OTTHUMG00000022448.3 +63790 chrX HAVANA gene 133989443 133990086 644.0 + 0 ENSG00000232068.1 unprocessed_pseudogene AF003529.1 2 OTTHUMG00000022447.1 +63791 chrX ENSEMBL gene 134142228 134142340 113.0 - 0 ENSG00000200572.1 misc_RNA RF00019 3 +63792 chrX HAVANA gene 134166682 134166932 251.0 + 0 ENSG00000224908.1 processed_pseudogene TIMM8BP2 1 OTTHUMG00000022449.2 pseudo_consens +63793 chrX ENSEMBL gene 134169378 134169452 75.0 - 0 ENSG00000284499.1 miRNA MIR363 3 +63794 chrX ENSEMBL gene 134169538 134169612 75.0 - 0 ENSG00000284538.1 miRNA MIR92A2 3 +63795 chrX ENSEMBL gene 134169671 134169766 96.0 - 0 ENSG00000284107.1 miRNA MIR19B2 3 +63796 chrX ENSEMBL gene 134169809 134169877 69.0 - 0 ENSG00000284043.1 miRNA MIR20B 3 +63797 chrX ENSEMBL gene 134170041 134170111 71.0 - 0 ENSG00000283931.1 miRNA MIR18B 3 +63798 chrX ENSEMBL gene 134170198 134170278 81.0 - 0 ENSG00000284157.1 miRNA MIR106A 3 +63799 chrX HAVANA gene 134168911 134174089 3863.0 - 0 ENSG00000283638.2 processed_transcript AC002407.1 2 OTTHUMG00000191855.1 ncRNA_host +63800 chrX HAVANA gene 134204353 134205916 869.0 + 0 ENSG00000232664.2 processed_pseudogene LARP1BP3 1 OTTHUMG00000022450.2 pseudo_consens +63801 chrX HAVANA gene 134237047 134246207 1790.0 + 0 ENSG00000203952.9 protein_coding CCDC160 2 OTTHUMG00000164183.2 +63802 chrX HAVANA gene 134272287 134273658 1372.0 + 0 ENSG00000214961.2 processed_pseudogene FO393409.1 1 OTTHUMG00000022451.1 pseudo_consens +63803 chrX HAVANA gene 134373253 134428791 8016.0 + 0 ENSG00000156531.16 protein_coding PHF6 2 OTTHUMG00000022453.3 +63804 chrX HAVANA gene 134460153 134520513 1624.0 + 0 ENSG00000165704.14 protein_coding HPRT1 2 OTTHUMG00000022452.1 +63805 chrX HAVANA gene 134522702 134522990 289.0 + 0 ENSG00000226107.1 processed_pseudogene AC004383.1 1 OTTHUMG00000022454.1 pseudo_consens +63806 chrX ENSEMBL gene 134540185 134540262 78.0 - 0 ENSG00000216001.3 miRNA MIR450B 3 +63807 chrX ENSEMBL gene 134540341 134540431 91.0 - 0 ENSG00000199132.1 miRNA MIR450A1 3 +63808 chrX ENSEMBL gene 134540508 134540607 100.0 - 0 ENSG00000207755.3 miRNA MIR450A2 3 +63809 chrX ENSEMBL gene 134541341 134541437 97.0 - 0 ENSG00000207784.3 miRNA MIR542 3 +63810 chrX ENSEMBL gene 134546328 134546398 71.0 - 0 ENSG00000208005.1 miRNA MIR503 3 +63811 chrX HAVANA gene 134543337 134546632 1678.0 - 0 ENSG00000223749.9 lincRNA MIR503HG 2 OTTHUMG00000022455.1 ncRNA_host +63812 chrX ENSEMBL gene 134546614 134546711 98.0 - 0 ENSG00000284231.1 miRNA MIR424 3 +63813 chrX HAVANA gene 134549973 134559923 909.0 + 0 ENSG00000227060.6 lincRNA LINC00629 2 OTTHUMG00000022456.2 +63814 chrX HAVANA gene 134599457 134606254 938.0 + 0 ENSG00000235813.1 lincRNA AL672032.1 2 OTTHUMG00000022458.1 +63815 chrX HAVANA gene 134607157 134607632 476.0 + 0 ENSG00000236509.2 processed_pseudogene RPL21P133 1 OTTHUMG00000022459.2 pseudo_consens +63816 chrX HAVANA gene 134650830 134651411 582.0 + 0 ENSG00000237432.2 processed_pseudogene RPS7P12 1 OTTHUMG00000022460.2 pseudo_consens +63817 chrX ENSEMBL gene 134760208 134760348 141.0 - 0 ENSG00000199920.1 snRNA RNU4-44P 3 +63818 chrX HAVANA gene 134565838 134764322 1916.0 - 0 ENSG00000170965.9 protein_coding PLAC1 2 OTTHUMG00000022457.1 ncRNA_host +63819 chrX HAVANA gene 134769566 134797232 4404.0 - 0 ENSG00000156504.16 protein_coding FAM122B 2 OTTHUMG00000022461.3 +63820 chrX ENSEMBL gene 134799782 134799945 162.0 - 0 ENSG00000280249.1 pseudogene AL691477.1 3 +63821 chrX HAVANA gene 134796395 134854835 7959.0 + 0 ENSG00000156500.15 protein_coding FAM122C 2 OTTHUMG00000022716.2 +63822 chrX HAVANA gene 134887626 134915267 2675.0 - 0 ENSG00000101928.12 protein_coding MOSPD1 2 OTTHUMG00000035315.2 +63823 chrX ENSEMBL gene 134918310 134918416 107.0 - 0 ENSG00000207081.1 snRNA RNU6-616P 3 +63824 chrX HAVANA gene 134949549 134953382 961.0 + 0 ENSG00000236091.1 lincRNA LINC02243 2 OTTHUMG00000022462.1 +63825 chrX HAVANA gene 134961711 134962305 595.0 - 0 ENSG00000231929.2 processed_pseudogene HMGB3P31 1 OTTHUMG00000022463.1 pseudo_consens +63826 chrX HAVANA gene 134990938 134992473 1536.0 + 0 ENSG00000184785.5 protein_coding SMIM10 2 OTTHUMG00000187484.1 +63827 chrX HAVANA gene 135020504 135022529 2026.0 - 0 ENSG00000212747.4 protein_coding RTL8B 2 OTTHUMG00000022464.3 +63828 chrX HAVANA gene 135032366 135033546 1181.0 + 0 ENSG00000134590.13 protein_coding RTL8C 2 OTTHUMG00000022465.3 +63829 chrX HAVANA gene 135050932 135052196 1265.0 - 0 ENSG00000203950.6 protein_coding RTL8A 2 OTTHUMG00000022466.3 +63830 chrX HAVANA gene 135075136 135076597 1462.0 - 0 ENSG00000234228.1 processed_pseudogene NCLP2 1 OTTHUMG00000022467.1 pseudo_consens +63831 chrX HAVANA gene 135094987 135098634 2737.0 - 0 ENSG00000196972.8 protein_coding SMIM10L2B 2 OTTHUMG00000022468.4 +63832 chrX HAVANA gene 135118955 135120526 700.0 - 0 ENSG00000224107.5 protein_coding ETDB 2 OTTHUMG00000022469.3 +63833 chrX HAVANA gene 135123239 135123604 250.0 - 0 ENSG00000223809.1 lincRNA AC234771.1 2 OTTHUMG00000022472.1 +63834 chrX HAVANA gene 135059685 135123952 1077.0 + 0 ENSG00000228372.7 lincRNA SMIM10L2B-AS1 2 OTTHUMG00000022470.2 +63835 chrX HAVANA gene 135135149 135135770 622.0 - 0 ENSG00000232582.1 processed_pseudogene AC234771.3 2 OTTHUMG00000022471.1 +63836 chrX HAVANA gene 135156536 135171398 1732.0 - 0 ENSG00000169551.12 protein_coding CT55 2 OTTHUMG00000022473.1 +63837 chrX HAVANA gene 135180255 135194679 730.0 - 0 ENSG00000236491.1 unprocessed_pseudogene AC234771.4 2 OTTHUMG00000022474.1 +63838 chrX HAVANA gene 135201731 135215232 597.0 + 0 ENSG00000228922.1 unprocessed_pseudogene AC234771.2 2 OTTHUMG00000022475.1 +63839 chrX HAVANA gene 135236895 135237408 514.0 + 0 ENSG00000269833.2 processed_pseudogene AC234771.5 2 OTTHUMG00000188610.1 +63840 chrX HAVANA gene 135252061 135253583 651.0 + 0 ENSG00000238210.3 protein_coding ETDA 2 OTTHUMG00000022476.3 +63841 chrX HAVANA gene 135297046 135298585 1136.0 + 0 ENSG00000274024.1 processed_pseudogene AL590282.1 2 OTTHUMG00000188048.1 +63842 chrX HAVANA gene 135309480 135309659 180.0 + 0 ENSG00000283644.1 protein_coding ETDC 2 OTTHUMG00000191754.1 +63843 chrX HAVANA gene 135327758 135330743 448.0 + 0 ENSG00000284994.1 lincRNA AL590282.2 2 OTTHUMG00000192503.1 +63844 chrX HAVANA gene 135248920 135344087 6819.0 - 0 ENSG00000186376.14 protein_coding ZNF75D 2 OTTHUMG00000022482.1 +63845 chrX HAVANA gene 135344796 135363152 5330.0 + 0 ENSG00000173275.12 protein_coding ZNF449 2 OTTHUMG00000022478.1 +63846 chrX HAVANA gene 135396429 135397764 405.0 + 0 ENSG00000229015.2 transcribed_unprocessed_pseudogene AL450472.1 2 OTTHUMG00000022481.2 +63847 chrX HAVANA gene 135421943 135428074 5230.0 + 0 ENSG00000178947.8 protein_coding SMIM10L2A 2 OTTHUMG00000022479.3 +63848 chrX ENSEMBL gene 135428168 135428285 118.0 - 0 ENSG00000201440.1 rRNA_pseudogene RNA5SP515 3 +63849 chrX HAVANA gene 135432960 135438634 5675.0 + 0 ENSG00000225769.1 processed_pseudogene CROCCP1 1 OTTHUMG00000022480.2 pseudo_consens +63850 chrX HAVANA gene 135445897 135447368 367.0 - 0 ENSG00000273988.1 unprocessed_pseudogene AL450472.3 2 OTTHUMG00000188049.1 +63851 chrX HAVANA gene 135464329 135465484 1156.0 - 0 ENSG00000271158.1 processed_pseudogene AL450472.2 1 OTTHUMG00000185069.1 pseudo_consens +63852 chrX HAVANA gene 135520083 135520674 398.0 - 0 ENSG00000225235.1 antisense INTS6L-AS1 2 OTTHUMG00000022483.1 +63853 chrX HAVANA gene 135520643 135582510 7193.0 + 0 ENSG00000165359.15 protein_coding INTS6L 2 OTTHUMG00000022484.3 +63854 chrX HAVANA gene 135583651 135585160 1432.0 - 0 ENSG00000237833.1 processed_pseudogene AL391380.1 1 OTTHUMG00000022485.1 pseudo_consens +63855 chrX HAVANA gene 135598927 135615431 3381.0 + 0 ENSG00000224539.1 unprocessed_pseudogene SAGE4P 2 OTTHUMG00000022486.1 +63856 chrX HAVANA gene 135637623 135642756 1635.0 - 0 ENSG00000277486.1 unprocessed_pseudogene SAGE3P 1 OTTHUMG00000188050.1 pseudo_consens +63857 chrX HAVANA gene 135673591 135686151 2126.0 - 0 ENSG00000198022.6 unprocessed_pseudogene SAGE2P 2 OTTHUMG00000022487.2 +63858 chrX HAVANA gene 135710095 135710377 283.0 - 0 ENSG00000274601.1 unprocessed_pseudogene AC240442.1 2 OTTHUMG00000188051.1 +63859 chrX HAVANA gene 135713453 135723539 1325.0 + 0 ENSG00000268940.5 protein_coding CT45A1 2 OTTHUMG00000188602.1 +63860 chrX HAVANA gene 135730733 135732197 797.0 - 0 ENSG00000233861.1 processed_pseudogene MGAT2P1 2 OTTHUMG00000022492.1 +63861 chrX HAVANA gene 135751119 135752583 797.0 + 0 ENSG00000238200.1 processed_pseudogene MGAT2P2 2 OTTHUMG00000022493.2 +63862 chrX HAVANA gene 135759846 135768191 1166.0 - 0 ENSG00000269096.6 protein_coding CT45A3 2 OTTHUMG00000022489.6 +63863 chrX HAVANA gene 135777130 135785298 1161.0 - 0 ENSG00000228836.8 protein_coding CT45A5 2 OTTHUMG00000188603.1 +63864 chrX HAVANA gene 135794706 135802656 916.0 - 0 ENSG00000278289.4 protein_coding CT45A6 2 OTTHUMG00000188604.1 +63865 chrX HAVANA gene 135811668 135820012 1321.0 - 0 ENSG00000271449.7 protein_coding CT45A2 2 OTTHUMG00000022490.6 +63866 chrX HAVANA gene 135829247 135837268 998.0 - 0 ENSG00000273696.4 protein_coding CT45A7 2 OTTHUMG00000022491.5 +63867 chrX HAVANA gene 135846499 135854538 1010.0 - 0 ENSG00000278085.4 protein_coding CT45A8 2 OTTHUMG00000188605.1 +63868 chrX HAVANA gene 135863776 135871812 1012.0 - 0 ENSG00000270946.5 protein_coding CT45A9 2 OTTHUMG00000188606.2 +63869 chrX HAVANA gene 135881063 135889086 1012.0 - 0 ENSG00000269586.7 protein_coding CT45A10 2 OTTHUMG00000022494.6 +63870 chrX HAVANA gene 135889205 135913061 2953.0 + 0 ENSG00000181433.9 protein_coding SAGE1 2 OTTHUMG00000022496.1 +63871 chrX HAVANA gene 135942478 135947139 1134.0 - 0 ENSG00000230162.1 unprocessed_pseudogene CT45A11P 2 OTTHUMG00000022497.1 +63872 chrX HAVANA gene 135962070 135974063 3738.0 - 0 ENSG00000169446.5 protein_coding MMGT1 2 OTTHUMG00000022499.3 +63873 chrX HAVANA gene 135973841 136047269 7167.0 + 0 ENSG00000198689.11 protein_coding SLC9A6 2 OTTHUMG00000022498.6 +63874 chrX HAVANA gene 136077844 136078631 788.0 + 0 ENSG00000219930.4 processed_pseudogene GAPDHP67 1 OTTHUMG00000022501.2 pseudo_consens +63875 chrX HAVANA gene 136097835 136098348 514.0 - 0 ENSG00000231513.3 processed_pseudogene E2F6P4 1 OTTHUMG00000022502.1 pseudo_consens +63876 chrX ENSEMBL gene 136134317 136134420 104.0 - 0 ENSG00000239080.1 snoRNA RF01210 3 +63877 chrX HAVANA gene 136146702 136211359 5997.0 + 0 ENSG00000022267.16 protein_coding FHL1 2 OTTHUMG00000022504.7 +63878 chrX HAVANA gene 136213220 136256482 7067.0 - 0 ENSG00000129680.15 protein_coding MAP7D3 1 OTTHUMG00000022507.4 +63879 chrX HAVANA gene 136295690 136300298 1291.0 - 0 ENSG00000230079.1 processed_pseudogene STK24P1 1 OTTHUMG00000022506.1 pseudo_consens +63880 chrX HAVANA gene 136300963 136416888 10074.0 + 0 ENSG00000156920.10 protein_coding ADGRG4 1 OTTHUMG00000022508.2 +63881 chrX HAVANA gene 136487887 136493780 2833.0 + 0 ENSG00000102239.4 protein_coding BRS3 2 OTTHUMG00000022726.1 +63882 chrX HAVANA gene 136497079 136512346 3136.0 + 0 ENSG00000102241.11 protein_coding HTATSF1 2 OTTHUMG00000022510.3 +63883 chrX ENSEMBL gene 136550878 136550960 83.0 + 0 ENSG00000216060.1 miRNA MIR934 3 +63884 chrX HAVANA gene 136532152 136556807 1541.0 + 0 ENSG00000102243.12 protein_coding VGLL1 2 OTTHUMG00000022509.2 ncRNA_host +63885 chrX ENSEMBL gene 136571705 136571815 111.0 - 0 ENSG00000199424.1 misc_RNA RF00019 3 +63886 chrX ENSEMBL gene 136583240 136583345 106.0 + 0 ENSG00000252320.1 snRNA RNU6-320P 3 +63887 chrX HAVANA gene 136639543 136642429 1918.0 + 0 ENSG00000233093.5 processed_transcript LINC00892 2 OTTHUMG00000022511.2 +63888 chrX HAVANA gene 136648193 136660390 1817.0 + 0 ENSG00000102245.7 protein_coding CD40LG 2 OTTHUMG00000022512.1 +63889 chrX ENSEMBL gene 136773999 136774105 107.0 + 0 ENSG00000212510.1 snRNA RNU6-972P 3 +63890 chrX HAVANA gene 136665547 136782088 6434.0 - 0 ENSG00000129675.15 protein_coding ARHGEF6 2 OTTHUMG00000022518.2 +63891 chrX HAVANA gene 136788286 136788787 502.0 + 0 ENSG00000271339.1 processed_pseudogene AL683813.2 1 OTTHUMG00000184939.1 pseudo_consens +63892 chrX HAVANA gene 136791064 136791780 717.0 + 0 ENSG00000231164.1 processed_pseudogene RPL7P56 1 OTTHUMG00000022513.1 pseudo_consens +63893 chrX HAVANA gene 136807223 136807877 655.0 - 0 ENSG00000225125.2 processed_pseudogene RANP4 1 OTTHUMG00000022514.2 pseudo_consens +63894 chrX ENSEMBL gene 136816477 136816574 98.0 - 0 ENSG00000202279.1 misc_RNA RF00019 3 +63895 chrX HAVANA gene 136840931 136847797 3018.0 - 0 ENSG00000232611.1 lincRNA AL683813.1 2 OTTHUMG00000022515.2 +63896 chrX HAVANA gene 136847384 136848034 651.0 + 0 ENSG00000225400.1 processed_pseudogene RAB28P5 1 OTTHUMG00000022516.1 pseudo_consens +63897 chrX ENSEMBL gene 136879199 136879271 73.0 - 0 ENSG00000206979.1 snoRNA SNORD61 3 +63898 chrX HAVANA gene 136848004 136880764 5882.0 - 0 ENSG00000147274.14 protein_coding RBMX 2 OTTHUMG00000022517.2 ncRNA_host +63899 chrX HAVANA gene 136947748 136948133 386.0 - 0 ENSG00000232379.1 processed_pseudogene RPL22P23 1 OTTHUMG00000040140.1 pseudo_consens +63900 chrX HAVANA gene 136976417 136985705 2678.0 - 0 ENSG00000237307.2 processed_pseudogene SRRM1P3 1 OTTHUMG00000022520.2 pseudo_consens +63901 chrX HAVANA gene 136909395 137021630 3389.0 + 0 ENSG00000234062.7 transcribed_unprocessed_pseudogene AL390879.1 2 OTTHUMG00000040141.2 +63902 chrX HAVANA gene 137030148 137031674 1527.0 - 0 ENSG00000165370.1 protein_coding GPR101 2 OTTHUMG00000022521.3 +63903 chrX HAVANA gene 137324972 137325049 78.0 - 0 ENSG00000214748.2 processed_pseudogene AL355309.1 2 OTTHUMG00000022522.1 +63904 chrX HAVANA gene 137441258 137441836 579.0 - 0 ENSG00000237584.1 processed_pseudogene RAC1P4 1 OTTHUMG00000022523.3 pseudo_consens +63905 chrX HAVANA gene 137556191 137564387 736.0 - 0 ENSG00000224765.1 antisense AL035443.1 2 OTTHUMG00000022524.1 +63906 chrX HAVANA gene 137566142 137577691 4136.0 + 0 ENSG00000156925.11 protein_coding ZIC3 2 OTTHUMG00000022525.1 overlapping_locus +63907 chrX ENSEMBL gene 137595265 137595547 283.0 + 0 ENSG00000239579.3 misc_RNA RN7SL325P 3 +63908 chrX HAVANA gene 137660519 137662242 1724.0 + 0 ENSG00000229562.1 processed_pseudogene ZFYVE9P1 1 OTTHUMG00000022526.1 pseudo_consens +63909 chrX ENSEMBL gene 137687891 137687994 104.0 - 0 ENSG00000222114.1 snRNA RNU6-985P 3 +63910 chrX HAVANA gene 137573752 137981763 2400.0 + 0 ENSG00000283692.1 lincRNA Z96074.1 2 OTTHUMG00000191795.1 ncRNA_host,overlapping_locus +63911 chrX ENSEMBL gene 138397351 138397628 278.0 + 0 ENSG00000252163.1 misc_RNA RN7SKP31 3 +63912 chrX HAVANA gene 138482745 138483695 951.0 + 0 ENSG00000183981.8 processed_pseudogene MAGEA13P 1 OTTHUMG00000022527.1 pseudo_consens +63913 chrX HAVANA gene 138487665 138488871 1207.0 - 0 ENSG00000214930.2 processed_pseudogene KRT8P6 1 OTTHUMG00000022528.1 pseudo_consens +63914 chrX HAVANA gene 138558996 138559298 303.0 + 0 ENSG00000285989.1 TEC AL357123.1 2 OTTHUMG00000193388.1 +63915 chrX HAVANA gene 138627077 138627343 142.0 + 0 ENSG00000232183.1 antisense AL031386.1 2 OTTHUMG00000022529.1 +63916 chrX ENSEMBL gene 138667711 138667793 83.0 - 0 ENSG00000207800.3 miRNA MIR504 3 +63917 chrX HAVANA gene 138711452 138716617 1145.0 + 0 ENSG00000226031.5 antisense FGF13-AS1 2 OTTHUMG00000137416.1 +63918 chrX HAVANA gene 138806374 138807091 718.0 + 0 ENSG00000235975.1 processed_pseudogene Z83313.1 1 OTTHUMG00000022531.1 pseudo_consens +63919 chrX HAVANA gene 138614731 139222777 20681.0 - 0 ENSG00000129682.15 protein_coding FGF13 2 OTTHUMG00000022532.7 ncRNA_host +63920 chrX HAVANA gene 139362040 139362382 343.0 + 0 ENSG00000173954.8 processed_pseudogene SNURFL 1 OTTHUMG00000022534.1 pseudo_consens +63921 chrX HAVANA gene 139446891 139447676 786.0 + 0 ENSG00000232549.1 processed_pseudogene SRD5A1P1 1 OTTHUMG00000022684.1 pseudo_consens +63922 chrX HAVANA gene 139530758 139563458 2780.0 + 0 ENSG00000101981.11 protein_coding F9 2 OTTHUMG00000022536.3 +63923 chrX ENSEMBL gene 139702287 139702390 104.0 - 0 ENSG00000238485.1 snoRNA RF01210 3 +63924 chrX HAVANA gene 139581770 139708227 4996.0 - 0 ENSG00000101977.20 protein_coding MCF2 2 OTTHUMG00000022537.5 ncRNA_host +63925 chrX ENSEMBL gene 139885481 139885603 123.0 + 0 ENSG00000221375.1 snRNA RNU6ATAC23P 3 +63926 chrX ENSEMBL gene 139909904 139910034 131.0 + 0 ENSG00000252719.1 snoRNA RF00425 3 +63927 chrX ENSEMBL gene 139924148 139924231 84.0 - 0 ENSG00000207633.3 miRNA MIR505 3 +63928 chrX HAVANA gene 139726346 139945276 7407.0 - 0 ENSG00000101974.14 protein_coding ATP11C 2 OTTHUMG00000022538.7 ncRNA_host +63929 chrX HAVANA gene 139955725 139965520 1281.0 - 0 ENSG00000203933.2 protein_coding CXorf66 2 OTTHUMG00000022539.1 +63930 chrX HAVANA gene 140017268 140018037 582.0 + 0 ENSG00000233145.1 lincRNA AL589987.2 2 OTTHUMG00000022540.1 +63931 chrX HAVANA gene 140032344 140033480 1137.0 + 0 ENSG00000214653.4 processed_pseudogene HNRNPA3P3 1 OTTHUMG00000022541.1 pseudo_consens +63932 chrX ENSEMBL gene 140085855 140086150 296.0 + 0 ENSG00000241248.3 misc_RNA RN7SL727P 3 +63933 chrX HAVANA gene 140091743 140092561 819.0 + 0 ENSG00000230707.1 processed_pseudogene AL589987.1 1 OTTHUMG00000022542.1 pseudo_consens +63934 chrX HAVANA gene 140216035 140216804 582.0 - 0 ENSG00000231110.1 lincRNA FO393408.1 2 OTTHUMG00000022543.2 +63935 chrX HAVANA gene 140397062 140398311 1226.0 + 0 ENSG00000224942.1 processed_pseudogene AL137014.1 1 OTTHUMG00000022545.1 pseudo_consens +63936 chrX ENSEMBL gene 140451148 140451208 61.0 + 0 ENSG00000275268.1 snRNA RF00066 3 +63937 chrX HAVANA gene 140470866 140471274 409.0 - 0 ENSG00000225758.1 processed_pseudogene RPS17P17 1 OTTHUMG00000022546.2 pseudo_consens +63938 chrX HAVANA gene 140502985 140505116 2132.0 - 0 ENSG00000134595.8 protein_coding SOX3 2 OTTHUMG00000022544.2 retrogene +63939 chrX HAVANA gene 140681106 140687705 323.0 - 0 ENSG00000230668.1 lincRNA AL844175.1 2 OTTHUMG00000022547.1 +63940 chrX HAVANA gene 140783578 140784366 789.0 - 0 ENSG00000184258.7 protein_coding CDR1 2 OTTHUMG00000189324.1 +63941 chrX HAVANA gene 140709562 140793215 28876.0 + 0 ENSG00000203930.11 antisense LINC00632 2 OTTHUMG00000022548.11 +63942 chrX ENSEMBL gene 140926172 140926219 48.0 - 0 ENSG00000221081.1 miRNA MIR320D2 3 +63943 chrX HAVANA gene 140931738 140997448 217.0 + 0 ENSG00000229269.1 lincRNA AL451048.1 2 OTTHUMG00000022550.1 +63944 chrX HAVANA gene 141002591 141003706 469.0 + 0 ENSG00000227234.1 protein_coding SPANXB1 2 OTTHUMG00000022554.2 +63945 chrX ENSEMBL gene 141118030 141118136 107.0 - 0 ENSG00000207041.1 snRNA RNU6-3P 3 +63946 chrX HAVANA gene 141138478 141139174 370.0 + 0 ENSG00000214925.3 processed_pseudogene AC234778.1 1 OTTHUMG00000022555.1 pseudo_consens +63947 chrX HAVANA gene 141173235 141173588 354.0 - 0 ENSG00000261212.1 lincRNA AC234778.2 2 OTTHUMG00000175566.1 +63948 chrX HAVANA gene 141175745 141177125 1381.0 - 0 ENSG00000182195.7 protein_coding LDOC1 2 OTTHUMG00000022558.2 +63949 chrX HAVANA gene 141241463 141242496 387.0 - 0 ENSG00000198573.6 protein_coding SPANXC 2 OTTHUMG00000022556.2 +63950 chrX HAVANA gene 141261119 141264213 946.0 - 0 ENSG00000213423.4 processed_pseudogene RBMX2P2 1 OTTHUMG00000022557.3 pseudo_consens +63951 chrX HAVANA gene 141380823 141381107 285.0 + 0 ENSG00000227779.1 processed_pseudogene AC234779.1 1 OTTHUMG00000022560.1 pseudo_consens +63952 chrX HAVANA gene 141583674 141585011 691.0 - 0 ENSG00000198021.7 protein_coding SPANXA1 2 OTTHUMG00000022564.3 +63953 chrX HAVANA gene 141589435 141590772 691.0 + 0 ENSG00000203926.4 protein_coding SPANXA2 2 OTTHUMG00000022565.2 overlapping_locus +63954 chrX HAVANA gene 141625864 141626733 681.0 + 0 ENSG00000223438.1 sense_intronic AC235097.1 2 OTTHUMG00000022567.1 overlapping_locus +63955 chrX HAVANA gene 141502849 141649927 1686.0 + 0 ENSG00000277215.1 lincRNA SPANXA2-OT1 2 OTTHUMG00000022566.3 overlapping_locus +63956 chrX HAVANA gene 141697411 141698739 682.0 - 0 ENSG00000196406.4 protein_coding SPANXD 2 OTTHUMG00000022563.2 +63957 chrX HAVANA gene 141838316 141897832 2763.0 + 0 ENSG00000165509.13 protein_coding MAGEC3 2 OTTHUMG00000022570.4 +63958 chrX HAVANA gene 141903894 141909388 4270.0 + 0 ENSG00000155495.8 protein_coding MAGEC1 2 OTTHUMG00000022569.1 retrogene +63959 chrX HAVANA gene 142147862 142148866 1005.0 - 0 ENSG00000236205.1 unprocessed_pseudogene AL023773.2 1 OTTHUMG00000022571.2 pseudo_consens +63960 chrX HAVANA gene 142172866 142173989 1124.0 - 0 ENSG00000225469.3 unprocessed_pseudogene AL023773.1 1 OTTHUMG00000022572.1 pseudo_consens +63961 chrX HAVANA gene 142194352 142195490 1139.0 - 0 ENSG00000250625.1 unprocessed_pseudogene AL031073.1 1 OTTHUMG00000022573.1 pseudo_consens +63962 chrX HAVANA gene 142202345 142205290 1991.0 - 0 ENSG00000046774.9 protein_coding MAGEC2 2 OTTHUMG00000022574.1 retrogene +63963 chrX HAVANA gene 142372276 142373990 1197.0 + 0 ENSG00000275508.1 processed_pseudogene AL109620.1 2 OTTHUMG00000188047.1 +63964 chrX ENSEMBL gene 142411053 142411171 119.0 + 0 ENSG00000201000.1 rRNA_pseudogene RNA5SP516 3 +63965 chrX HAVANA gene 143025918 143034702 625.0 + 0 ENSG00000189326.4 protein_coding SPANXN4 1 OTTHUMG00000022575.3 +63966 chrX ENSEMBL gene 143090347 143090677 331.0 + 0 ENSG00000202473.1 misc_RNA RN7SKP81 3 +63967 chrX ENSEMBL gene 143197248 143197591 344.0 - 0 ENSG00000199878.1 misc_RNA RN7SKP149 3 +63968 chrX HAVANA gene 143343976 143344585 610.0 + 0 ENSG00000226064.1 processed_pseudogene PGBD4P6 2 OTTHUMG00000022576.1 overlapping_locus +63969 chrX HAVANA gene 143433042 143433958 917.0 + 0 ENSG00000235539.1 processed_pseudogene MTND1P33 2 OTTHUMG00000022577.2 overlapping_locus +63970 chrX HAVANA gene 143434517 143435280 764.0 + 0 ENSG00000230130.1 processed_pseudogene MTND2P39 2 OTTHUMG00000022578.1 overlapping_locus +63971 chrX HAVANA gene 143284977 143516803 623.0 + 0 ENSG00000227303.1 antisense AC239727.1 2 OTTHUMG00000022584.1 overlapping_locus +63972 chrX HAVANA gene 143508735 143517475 590.0 - 0 ENSG00000189252.4 protein_coding SPANXN3 2 OTTHUMG00000022582.3 +63973 chrX HAVANA gene 143622790 143635777 8914.0 - 0 ENSG00000179542.15 protein_coding SLITRK4 2 OTTHUMG00000022580.2 +63974 chrX HAVANA gene 143677153 143678362 1210.0 - 0 ENSG00000213924.3 processed_pseudogene HNRNPH1P2 1 OTTHUMG00000022581.2 pseudo_consens +63975 chrX HAVANA gene 143711955 143721423 1378.0 - 0 ENSG00000268988.1 protein_coding SPANXN2 2 OTTHUMG00000022583.4 +63976 chrX HAVANA gene 143806391 143806733 343.0 + 0 ENSG00000235729.1 processed_pseudogene AL500522.2 1 OTTHUMG00000022585.1 pseudo_consens,overlapping_locus +63977 chrX HAVANA gene 143757737 143828133 318.0 + 0 ENSG00000225970.1 lincRNA AL500522.1 2 OTTHUMG00000022587.1 overlapping_locus +63978 chrX HAVANA gene 143884071 143885255 1185.0 + 0 ENSG00000276380.2 polymorphic_pseudogene UBE2NL 2 OTTHUMG00000188525.2 retrogene +63979 chrX HAVANA gene 144308834 144309080 247.0 - 0 ENSG00000224630.2 processed_pseudogene AC234064.1 2 OTTHUMG00000022589.3 +63980 chrX HAVANA gene 144309132 144309693 562.0 + 0 ENSG00000235598.1 processed_pseudogene RRM2P4 1 OTTHUMG00000022588.1 pseudo_consens +63981 chrX HAVANA gene 144840777 144841660 884.0 + 0 ENSG00000215054.3 processed_pseudogene HNRNPCP10 1 OTTHUMG00000022590.2 pseudo_consens +63982 chrX ENSEMBL gene 145057108 145057437 330.0 + 0 ENSG00000201912.1 misc_RNA RN7SKP189 3 +63983 chrX HAVANA gene 145176582 145176894 313.0 + 0 ENSG00000233548.1 processed_pseudogene CYCSP44 1 OTTHUMG00000022591.1 pseudo_consens +63984 chrX HAVANA gene 145232929 145233619 378.0 - 0 ENSG00000234712.1 antisense AL713923.1 2 OTTHUMG00000022592.1 +63985 chrX HAVANA gene 145246828 145256112 1276.0 + 0 ENSG00000203923.4 protein_coding SPANXN1 2 OTTHUMG00000022593.2 +63986 chrX HAVANA gene 145630218 145632375 1855.0 + 0 ENSG00000231093.1 processed_pseudogene AL391256.1 2 OTTHUMG00000022594.1 +63987 chrX HAVANA gene 145768095 145768342 248.0 + 0 ENSG00000270709.1 processed_pseudogene AL109653.1 1 OTTHUMG00000184937.1 pseudo_consens +63988 chrX HAVANA gene 145797375 145798439 1065.0 + 0 ENSG00000279585.1 TEC AL109653.2 2 OTTHUMG00000175565.1 +63989 chrX HAVANA gene 145817832 145829856 11881.0 + 0 ENSG00000185985.9 protein_coding SLITRK2 2 OTTHUMG00000022595.3 +63990 chrX ENSEMBL gene 145992750 145992826 77.0 - 0 ENSG00000252219.2 miRNA MIR892C 3 +63991 chrX ENSEMBL gene 145994275 145994351 77.0 - 0 ENSG00000216075.1 miRNA MIR890 3 +63992 chrX ENSEMBL gene 145994784 145994860 77.0 - 0 ENSG00000216005.1 miRNA MIR888 3 +63993 chrX ENSEMBL gene 145996669 145996743 75.0 - 0 ENSG00000215943.1 miRNA MIR892A 3 +63994 chrX ENSEMBL gene 145997198 145997274 77.0 - 0 ENSG00000216098.1 miRNA MIR892B 3 +63995 chrX ENSEMBL gene 146001053 146001131 79.0 - 0 ENSG00000216064.1 miRNA MIR891B 3 +63996 chrX ENSEMBL gene 146027794 146027872 79.0 - 0 ENSG00000216056.1 miRNA MIR891A 3 +63997 chrX ENSEMBL gene 146427456 146427572 117.0 - 0 ENSG00000201594.1 rRNA_pseudogene RNA5SP517 3 +63998 chrX HAVANA gene 146537535 146538048 514.0 + 0 ENSG00000234748.1 processed_pseudogene AL109913.1 1 OTTHUMG00000022596.1 pseudo_consens +63999 chrX HAVANA gene 146553728 146555765 1376.0 + 0 ENSG00000226388.1 processed_pseudogene ELL2P4 1 OTTHUMG00000022597.1 pseudo_consens +64000 chrX HAVANA gene 146619597 146620584 988.0 - 0 ENSG00000231686.1 processed_pseudogene Z97180.1 1 OTTHUMG00000022598.1 pseudo_consens +64001 chrX HAVANA gene 146809784 146810409 436.0 + 0 ENSG00000235699.2 protein_coding CXorf51B 2 OTTHUMG00000022599.2 +64002 chrX HAVANA gene 146814106 146814726 431.0 - 0 ENSG00000224440.1 protein_coding CXorf51A 2 OTTHUMG00000022600.2 +64003 chrX HAVANA gene 146955075 146955209 135.0 + 0 ENSG00000225660.1 processed_pseudogene Z99497.1 2 OTTHUMG00000022601.1 +64004 chrX HAVANA gene 146964176 146964485 310.0 - 0 ENSG00000271660.1 processed_pseudogene Z99497.2 1 OTTHUMG00000185054.1 pseudo_consens +64005 chrX ENSEMBL gene 147189704 147189787 84.0 - 0 ENSG00000216171.1 miRNA MIR513C 3 +64006 chrX ENSEMBL gene 147199044 147199127 84.0 - 0 ENSG00000207871.2 miRNA MIR513B 3 +64007 chrX ENSEMBL gene 147213463 147213591 129.0 - 0 ENSG00000207873.1 miRNA MIR513A1 3 +64008 chrX ENSEMBL gene 147225826 147225952 127.0 - 0 ENSG00000207984.1 miRNA MIR513A2 3 +64009 chrX ENSEMBL gene 147230720 147230843 124.0 - 0 ENSG00000207731.1 miRNA MIR506 3 +64010 chrX ENSEMBL gene 147230984 147231077 94.0 - 0 ENSG00000207969.1 miRNA MIR507 3 +64011 chrX ENSEMBL gene 147236913 147237027 115.0 - 0 ENSG00000207589.1 miRNA MIR508 3 +64012 chrX ENSEMBL gene 147250151 147250230 80.0 - 0 ENSG00000252583.2 miRNA MIR514B 3 +64013 chrX ENSEMBL gene 147258760 147258850 91.0 - 0 ENSG00000212013.1 miRNA MIR509-2 3 +64014 chrX ENSEMBL gene 147259652 147259726 75.0 - 0 ENSG00000212014.1 miRNA MIR509-3 3 +64015 chrX ENSEMBL gene 147260532 147260625 94.0 - 0 ENSG00000208000.1 miRNA MIR509-1 3 +64016 chrX HAVANA gene 147181064 147271894 1506.0 + 0 ENSG00000284377.1 lincRNA AL589669.1 2 OTTHUMG00000191995.1 +64017 chrX ENSEMBL gene 147272335 147272408 74.0 - 0 ENSG00000207641.1 miRNA MIR510 3 +64018 chrX ENSEMBL gene 147279247 147279344 98.0 - 0 ENSG00000207868.1 miRNA MIR514A1 3 +64019 chrX ENSEMBL gene 147281943 147282030 88.0 - 0 ENSG00000207866.1 miRNA MIR514A2 3 +64020 chrX ENSEMBL gene 147284641 147284728 88.0 - 0 ENSG00000207867.1 miRNA MIR514A3 3 +64021 chrX HAVANA gene 147476324 147476446 123.0 + 0 ENSG00000274579.1 processed_pseudogene AL096861.1 2 OTTHUMG00000188046.1 +64022 chrX HAVANA gene 147591612 147591909 298.0 - 0 ENSG00000228855.1 processed_pseudogene AL009048.1 1 OTTHUMG00000022602.1 pseudo_consens +64023 chrX HAVANA gene 147801005 147801302 298.0 + 0 ENSG00000227505.1 processed_pseudogene AC016925.1 1 OTTHUMG00000022603.1 pseudo_consens +64024 chrX HAVANA gene 147812733 147812974 242.0 - 0 ENSG00000271175.1 processed_pseudogene AC016925.2 1 OTTHUMG00000185055.1 pseudo_consens +64025 chrX ENSEMBL gene 147827279 147827384 106.0 + 0 ENSG00000202051.1 snRNA RNU6-382P 3 +64026 chrX HAVANA gene 147900178 147901459 534.0 - 0 ENSG00000227083.1 antisense L29074.1 1 OTTHUMG00000022605.1 +64027 chrX HAVANA gene 147909431 147911817 2387.0 - 0 ENSG00000268066.5 processed_transcript FMR1-AS1 2 OTTHUMG00000182466.1 +64028 chrX ENSEMBL gene 147911822 147911948 127.0 + 0 ENSG00000274086.1 misc_RNA RF02118 3 +64029 chrX HAVANA gene 147946941 147947583 343.0 + 0 ENSG00000236337.1 sense_intronic FMR1-IT1 2 OTTHUMG00000046184.1 overlapping_locus +64030 chrX HAVANA gene 147911951 147951125 8827.0 + 0 ENSG00000102081.14 protein_coding FMR1 2 OTTHUMG00000022606.5 overlapping_locus +64031 chrX ENSEMBL gene 148008100 148008215 116.0 - 0 ENSG00000201285.1 rRNA RNA5SP524 3 +64032 chrX HAVANA gene 147981329 148026667 1149.0 + 0 ENSG00000176988.8 protein_coding FMR1NB 2 OTTHUMG00000022608.4 +64033 chrX HAVANA gene 148052233 148052746 514.0 + 0 ENSG00000219507.4 processed_pseudogene FTH1P8 1 OTTHUMG00000022607.1 pseudo_consens +64034 chrX HAVANA gene 148198014 148198878 865.0 - 0 ENSG00000233467.2 processed_pseudogene U40455.1 1 OTTHUMG00000022609.1 pseudo_consens +64035 chrX HAVANA gene 148464708 148465428 721.0 + 0 ENSG00000176970.8 processed_pseudogene RPL7L1P11 1 OTTHUMG00000022610.2 pseudo_consens +64036 chrX HAVANA gene 148498113 148500615 388.0 - 0 ENSG00000237741.1 antisense AC002368.1 2 OTTHUMG00000022612.1 +64037 chrX HAVANA gene 148546878 148547397 443.0 + 0 ENSG00000223516.1 sense_intronic AFF2-IT1 2 OTTHUMG00000022611.1 overlapping_locus +64038 chrX ENSEMBL gene 148822164 148822448 285.0 - 0 ENSG00000222313.1 misc_RNA RN7SKP267 3 +64039 chrX HAVANA gene 148500619 149000663 14006.0 + 0 ENSG00000155966.13 protein_coding AFF2 2 OTTHUMG00000022613.4 overlapping_locus +64040 chrX HAVANA gene 149056716 149057166 260.0 + 0 ENSG00000242186.1 unprocessed_pseudogene AC231760.1 2 OTTHUMG00000022614.2 +64041 chrX HAVANA gene 149476990 149521096 9292.0 - 0 ENSG00000010404.17 protein_coding IDS 2 OTTHUMG00000022615.8 overlapping_locus +64042 chrX HAVANA gene 149525001 149526043 376.0 + 0 ENSG00000176289.4 unprocessed_pseudogene IDSP1 2 OTTHUMG00000022620.1 +64043 chrX HAVANA gene 149511509 149526264 655.0 - 0 ENSG00000238039.1 lincRNA AC244197.2 2 OTTHUMG00000022616.1 overlapping_locus +64044 chrX HAVANA gene 149482543 149533935 3311.0 - 0 ENSG00000241489.7 protein_coding AC244197.3 2 OTTHUMG00000022618.5 overlapping_locus +64045 chrX HAVANA gene 149527591 149540959 3604.0 - 0 ENSG00000241769.7 antisense LINC00893 2 OTTHUMG00000022617.6 overlapping_locus +64046 chrX HAVANA gene 149548210 149549932 1264.0 - 0 ENSG00000283697.2 protein_coding HSFX3 2 OTTHUMG00000022623.4 +64047 chrX HAVANA gene 149540355 149550510 4104.0 + 0 ENSG00000197620.10 protein_coding CXorf40A 2 OTTHUMG00000022622.6 +64048 chrX HAVANA gene 149581653 149587453 1921.0 - 0 ENSG00000267978.5 protein_coding MAGEA9B 2 OTTHUMG00000188533.3 +64049 chrX HAVANA gene 149592515 149594716 1365.0 - 0 ENSG00000268738.2 protein_coding HSFX2 2 OTTHUMG00000188526.1 +64050 chrX HAVANA gene 149596556 149631912 5158.0 - 0 ENSG00000269556.7 protein_coding TMEM185A 2 OTTHUMG00000022625.10 +64051 chrX HAVANA gene 149649174 149650124 951.0 - 0 ENSG00000229322.1 processed_pseudogene AC244197.1 2 OTTHUMG00000022624.2 +64052 chrX HAVANA gene 149688228 149717266 3465.0 + 0 ENSG00000185247.14 protein_coding MAGEA11 1 OTTHUMG00000022633.5 +64053 chrX HAVANA gene 149757797 149757895 99.0 + 0 ENSG00000228833.1 unprocessed_pseudogene AC244098.2 2 OTTHUMG00000150425.1 +64054 chrX HAVANA gene 149758021 149758295 275.0 - 0 ENSG00000223377.1 unprocessed_pseudogene AC244098.1 2 OTTHUMG00000022628.2 +64055 chrX HAVANA gene 149760779 149760874 96.0 + 0 ENSG00000231694.1 unprocessed_pseudogene AC244098.3 2 OTTHUMG00000150426.1 +64056 chrX HAVANA gene 149768897 149771368 546.0 + 0 ENSG00000235254.3 unprocessed_pseudogene TMEM185AP1 2 OTTHUMG00000022629.4 +64057 chrX HAVANA gene 149774068 149776867 1963.0 + 0 ENSG00000171116.7 protein_coding HSFX1 2 OTTHUMG00000022626.1 +64058 chrX HAVANA gene 149781930 149787737 1814.0 + 0 ENSG00000123584.7 protein_coding MAGEA9 2 OTTHUMG00000022621.4 retrogene +64059 chrX HAVANA gene 149808214 149809155 942.0 + 0 ENSG00000224732.1 unprocessed_pseudogene MAGEA7P 1 OTTHUMG00000022631.3 pseudo_consens +64060 chrX HAVANA gene 149817170 149817644 475.0 + 0 ENSG00000229829.1 processed_pseudogene DUTP4 1 OTTHUMG00000022632.1 pseudo_consens +64061 chrX HAVANA gene 149825708 149879799 685.0 + 0 ENSG00000280752.1 lincRNA LINC00850 2 OTTHUMG00000189730.1 +64062 chrX HAVANA gene 149878836 149881070 476.0 - 0 ENSG00000230899.1 antisense MAGEA8-AS1 1 OTTHUMG00000022634.1 +64063 chrX HAVANA gene 149881141 149885835 2363.0 + 0 ENSG00000156009.9 protein_coding MAGEA8 2 OTTHUMG00000022635.2 retrogene +64064 chrX HAVANA gene 149929645 149931287 1184.0 + 0 ENSG00000283463.1 protein_coding HSFX4 2 OTTHUMG00000034359.2 +64065 chrX HAVANA gene 149929527 149938811 2509.0 - 0 ENSG00000197021.8 protein_coding CXorf40B 2 OTTHUMG00000034327.5 +64066 chrX HAVANA gene 150114378 150116520 2143.0 + 0 ENSG00000183171.5 processed_pseudogene BX322650.1 1 OTTHUMG00000022636.1 pseudo_consens,overlapping_locus +64067 chrX HAVANA gene 149938628 150224580 6323.0 + 0 ENSG00000235703.5 antisense LINC00894 1 OTTHUMG00000022638.4 overlapping_locus +64068 chrX ENSEMBL gene 150228004 150228083 80.0 + 0 ENSG00000252454.3 miRNA MIR2114 3 +64069 chrX HAVANA gene 150231075 150232896 1822.0 - 0 ENSG00000234825.3 processed_pseudogene XRCC6P2 1 OTTHUMG00000022637.4 pseudo_consens +64070 chrX HAVANA gene 150361422 150514178 5958.0 + 0 ENSG00000013619.13 protein_coding MAMLD1 2 OTTHUMG00000024157.5 +64071 chrX HAVANA gene 150568619 150673322 4016.0 + 0 ENSG00000171100.14 protein_coding MTM1 2 OTTHUMG00000024158.6 +64072 chrX HAVANA gene 150692971 150765103 6323.0 + 0 ENSG00000063601.16 protein_coding MTMR1 2 OTTHUMG00000024159.6 +64073 chrX HAVANA gene 150818753 150819246 494.0 + 0 ENSG00000228728.1 processed_pseudogene PPIAP91 1 OTTHUMG00000024160.1 pseudo_consens +64074 chrX HAVANA gene 150766337 150898816 5762.0 - 0 ENSG00000102181.20 protein_coding CD99L2 2 OTTHUMG00000024247.6 +64075 chrX HAVANA gene 150915813 150920938 520.0 + 0 ENSG00000230153.5 lincRNA AF274573.1 2 OTTHUMG00000024161.1 +64076 chrX ENSEMBL gene 150955494 150955587 94.0 - 0 ENSG00000222796.1 snRNA RNU6-383P 3 +64077 chrX HAVANA gene 150980509 150990775 3967.0 + 0 ENSG00000029993.14 protein_coding HMGB3 2 OTTHUMG00000024162.2 +64078 chrX HAVANA gene 150993501 150994091 591.0 + 0 ENSG00000230508.1 processed_pseudogene RPL19P21 1 OTTHUMG00000024163.1 pseudo_consens +64079 chrX HAVANA gene 151023607 151023722 116.0 - 0 ENSG00000270916.1 processed_pseudogene RPL12P50 2 OTTHUMG00000185066.1 +64080 chrX ENSEMBL gene 151026295 151026406 112.0 - 0 ENSG00000212595.1 rRNA RNA5SP525 3 +64081 chrX ENSEMBL gene 151168222 151168326 105.0 + 0 ENSG00000265789.1 miRNA MIR4330 3 +64082 chrX HAVANA gene 151175192 151177836 1620.0 - 0 ENSG00000234696.1 antisense GPR50-AS1 2 OTTHUMG00000024165.1 +64083 chrX HAVANA gene 151176653 151181465 1951.0 + 0 ENSG00000102195.9 protein_coding GPR50 2 OTTHUMG00000024166.1 +64084 chrX HAVANA gene 151182386 151182855 470.0 + 0 ENSG00000269993.1 lincRNA KC877982.1 2 OTTHUMG00000184144.2 +64085 chrX HAVANA gene 151226229 151227715 1487.0 - 0 ENSG00000228717.1 processed_pseudogene AF013593.1 1 OTTHUMG00000024167.1 pseudo_consens +64086 chrX ENSEMBL gene 151275509 151275789 281.0 + 0 ENSG00000278724.1 misc_RNA RF00017 3 +64087 chrX HAVANA gene 151396515 151409364 5109.0 + 0 ENSG00000160131.13 protein_coding VMA21 2 OTTHUMG00000024168.2 +64088 chrX HAVANA gene 151497726 151498354 435.0 + 0 ENSG00000270052.1 lincRNA BX546450.2 2 OTTHUMG00000184061.1 +64089 chrX HAVANA gene 151515551 151516245 482.0 + 0 ENSG00000214915.3 lincRNA BX546450.1 1 OTTHUMG00000032120.1 +64090 chrX HAVANA gene 151611664 151671196 615.0 + 0 ENSG00000239429.1 unprocessed_pseudogene AF274854.1 2 OTTHUMG00000040477.1 overlapping_locus +64091 chrX HAVANA gene 151563622 151676739 4429.0 + 0 ENSG00000166049.10 protein_coding PASD1 2 OTTHUMG00000024169.3 overlapping_locus +64092 chrX HAVANA gene 151695124 151705924 6364.0 + 0 ENSG00000130032.15 protein_coding PRRG3 2 OTTHUMG00000024170.2 +64093 chrX HAVANA gene 151716035 151723194 1072.0 + 0 ENSG00000147378.11 protein_coding FATE1 2 OTTHUMG00000024172.2 +64094 chrX HAVANA gene 151738451 151745304 2834.0 + 0 ENSG00000183862.5 protein_coding CNGA2 2 OTTHUMG00000024173.1 +64095 chrX HAVANA gene 151904431 151913968 1589.0 - 0 ENSG00000229967.1 antisense MAGEA4-AS1 1 OTTHUMG00000024175.1 +64096 chrX HAVANA gene 151912509 151925170 3081.0 + 0 ENSG00000147381.11 protein_coding MAGEA4 2 OTTHUMG00000024174.3 retrogene +64097 chrX ENSEMBL gene 151958578 151958658 81.0 - 0 ENSG00000284363.1 miRNA MIR224 3 +64098 chrX ENSEMBL gene 151959628 151959712 85.0 - 0 ENSG00000283751.1 miRNA MIR452 3 +64099 chrX HAVANA gene 151953124 151974680 9612.0 - 0 ENSG00000102287.18 protein_coding GABRE 2 OTTHUMG00000024176.3 ncRNA_host +64100 chrX HAVANA gene 152045314 152046193 880.0 - 0 ENSG00000228965.1 processed_pseudogene RPSAP60 1 OTTHUMG00000024177.1 pseudo_consens +64101 chrX HAVANA gene 152114599 152115540 942.0 - 0 ENSG00000242520.5 transcribed_unprocessed_pseudogene MAGEA5 1 OTTHUMG00000160288.2 pseudo_consens,overlapping_locus +64102 chrX HAVANA gene 152114994 152138556 1310.0 - 0 ENSG00000266560.5 processed_transcript MAGEA10-MAGEA5 2 OTTHUMG00000179366.2 overlapping_locus +64103 chrX HAVANA gene 152133310 152138578 2899.0 - 0 ENSG00000124260.11 protein_coding MAGEA10 2 OTTHUMG00000024180.5 overlapping_locus,retrogene +64104 chrX HAVANA gene 152138883 152186857 551.0 + 0 ENSG00000231937.1 antisense AC116666.1 2 OTTHUMG00000024178.1 +64105 chrX ENSEMBL gene 152250572 152250676 105.0 - 0 ENSG00000252205.1 snRNA RNU6-764P 3 +64106 chrX ENSEMBL gene 152392219 152392299 81.0 - 0 ENSG00000207957.1 miRNA MIR105-1 3 +64107 chrX ENSEMBL gene 152393421 152393529 109.0 - 0 ENSG00000211583.3 miRNA MIR767 3 +64108 chrX ENSEMBL gene 152394412 152394492 81.0 - 0 ENSG00000207818.1 miRNA MIR105-2 3 +64109 chrX HAVANA gene 152166234 152451358 4193.0 - 0 ENSG00000011677.12 protein_coding GABRA3 2 OTTHUMG00000024183.3 ncRNA_host +64110 chrX HAVANA gene 152479577 152481024 1448.0 + 0 ENSG00000223940.1 processed_pseudogene KRT8P8 1 OTTHUMG00000024182.1 pseudo_consens +64111 chrX HAVANA gene 152638183 152657534 6172.0 + 0 ENSG00000268089.2 protein_coding GABRQ 2 OTTHUMG00000022649.4 +64112 chrX HAVANA gene 152682810 152683842 955.0 + 0 ENSG00000269475.2 unprocessed_pseudogene AC244102.2 1 OTTHUMG00000188621.1 pseudo_consens +64113 chrX HAVANA gene 152698752 152702347 1788.0 + 0 ENSG00000221867.8 protein_coding MAGEA3 2 OTTHUMG00000022640.3 retrogene +64114 chrX HAVANA gene 152708261 152714549 1083.0 - 0 ENSG00000268902.3 protein_coding CSAG2 2 OTTHUMG00000022641.6 +64115 chrX HAVANA gene 152714586 152718607 2422.0 + 0 ENSG00000183305.13 protein_coding MAGEA2B 2 OTTHUMG00000022645.5 retrogene +64116 chrX HAVANA gene 152727484 152733735 1092.0 - 0 ENSG00000198930.12 protein_coding CSAG1 2 OTTHUMG00000022648.3 +64117 chrX HAVANA gene 152733779 152737669 1943.0 + 0 ENSG00000213401.9 protein_coding MAGEA12 2 OTTHUMG00000022650.3 overlapping_locus,retrogene +64118 chrX HAVANA gene 152733827 152740985 755.0 + 0 ENSG00000242599.7 transcribed_unprocessed_pseudogene CSAG4 2 OTTHUMG00000022646.4 overlapping_locus +64119 chrX HAVANA gene 152746817 152747762 848.0 + 0 ENSG00000231447.1 antisense AC244102.1 2 OTTHUMG00000022647.1 +64120 chrX HAVANA gene 152749863 152753884 2272.0 - 0 ENSG00000268606.5 protein_coding MAGEA2 2 OTTHUMG00000188622.3 retrogene +64121 chrX HAVANA gene 152753921 152760222 1083.0 + 0 ENSG00000268916.6 protein_coding CSAG3 2 OTTHUMG00000188381.2 +64122 chrX HAVANA gene 152766136 152769747 1863.0 - 0 ENSG00000197172.10 protein_coding MAGEA6 2 OTTHUMG00000022642.5 retrogene +64123 chrX HAVANA gene 152826973 152830777 1928.0 - 0 ENSG00000147400.8 protein_coding CETN2 2 OTTHUMG00000024246.1 +64124 chrX HAVANA gene 152830967 152869729 1996.0 + 0 ENSG00000147383.10 protein_coding NSDHL 2 OTTHUMG00000024185.2 +64125 chrX HAVANA gene 152914442 152973480 4812.0 + 0 ENSG00000147394.18 protein_coding ZNF185 1 OTTHUMG00000024187.12 +64126 chrX HAVANA gene 152988824 152994127 3439.0 - 0 ENSG00000198883.11 protein_coding PNMA5 2 OTTHUMG00000024184.3 +64127 chrX HAVANA gene 153028785 153030148 1364.0 + 0 ENSG00000234200.2 unprocessed_pseudogene AC243591.1 2 OTTHUMG00000024188.4 +64128 chrX HAVANA gene 153052150 153052413 264.0 - 0 ENSG00000229979.1 processed_pseudogene AC243428.1 2 OTTHUMG00000024190.1 +64129 chrX HAVANA gene 153056409 153060467 3748.0 + 0 ENSG00000183837.9 protein_coding PNMA3 2 OTTHUMG00000024195.4 +64130 chrX HAVANA gene 153072482 153075018 2209.0 + 0 ENSG00000235961.5 protein_coding PNMA6A 2 OTTHUMG00000186485.2 +64131 chrX HAVANA gene 153075769 153076968 1200.0 - 0 ENSG00000268883.2 unprocessed_pseudogene PNMA6B 2 OTTHUMG00000186486.3 +64132 chrX HAVANA gene 153122145 153128323 2006.0 - 0 ENSG00000224931.3 unprocessed_pseudogene AC152010.1 1 OTTHUMG00000067452.2 pseudo_consens +64133 chrX HAVANA gene 153179285 153183880 1710.0 + 0 ENSG00000198681.6 protein_coding MAGEA1 2 OTTHUMG00000024192.2 retrogene +64134 chrX HAVANA gene 153203044 153205534 310.0 + 0 ENSG00000235219.1 unprocessed_pseudogene AC236972.2 2 OTTHUMG00000067453.1 +64135 chrX HAVANA gene 153225649 153230357 1232.0 + 0 ENSG00000273877.4 lincRNA AC236972.3 2 OTTHUMG00000188638.1 +64136 chrX HAVANA gene 153249115 153249691 199.0 - 0 ENSG00000231600.1 unprocessed_pseudogene AC236972.1 2 OTTHUMG00000067456.1 +64137 chrX HAVANA gene 153276841 153277803 963.0 + 0 ENSG00000278803.1 unprocessed_pseudogene AC236972.4 1 OTTHUMG00000188639.1 pseudo_consens +64138 chrX HAVANA gene 153317681 153321822 3348.0 - 0 ENSG00000225110.2 protein_coding PNMA6F 2 OTTHUMG00000067448.5 +64139 chrX HAVANA gene 153355733 153355956 224.0 + 0 ENSG00000232249.1 unprocessed_pseudogene AC152007.1 2 OTTHUMG00000067455.1 overlapping_locus +64140 chrX HAVANA gene 153334147 153360110 8147.0 + 0 ENSG00000063587.14 protein_coding ZNF275 2 OTTHUMG00000067450.5 overlapping_locus +64141 chrX HAVANA gene 153395640 153401420 3458.0 - 0 ENSG00000214897.4 protein_coding PNMA6E 2 OTTHUMG00000024197.6 +64142 chrX ENSEMBL gene 153403844 153404141 298.0 - 0 ENSG00000265170.2 misc_RNA RN7SL667P 3 +64143 chrX HAVANA gene 153418322 153426481 6105.0 + 0 ENSG00000189420.8 protein_coding ZFP92 2 OTTHUMG00000024198.4 +64144 chrX HAVANA gene 153444720 153470587 2715.0 - 0 ENSG00000183479.12 protein_coding TREX2 2 OTTHUMG00000159319.5 overlapping_locus +64145 chrX HAVANA gene 153479266 153487088 2167.0 + 0 ENSG00000224963.3 transcribed_unitary_pseudogene U82695.1 1 OTTHUMG00000024203.3 +64146 chrX HAVANA gene 153447666 153495516 3968.0 - 0 ENSG00000213397.10 protein_coding HAUS7 2 OTTHUMG00000159321.3 overlapping_locus +64147 chrX HAVANA gene 153494939 153509554 2453.0 + 0 ENSG00000182492.15 protein_coding BGN 2 OTTHUMG00000024205.4 +64148 chrX HAVANA gene 153517676 153582939 7534.0 + 0 ENSG00000067842.17 protein_coding ATP2B3 2 OTTHUMG00000024202.5 +64149 chrX HAVANA gene 153587919 153600045 1730.0 - 0 ENSG00000262919.7 protein_coding CCNQ 2 OTTHUMG00000024206.7 +64150 chrX HAVANA gene 153604497 153605348 852.0 - 0 ENSG00000217889.3 processed_pseudogene KRT18P48 1 OTTHUMG00000024199.1 pseudo_consens +64151 chrX HAVANA gene 153599315 153613937 5206.0 + 0 ENSG00000260081.2 transcribed_processed_pseudogene AF274858.1 1 OTTHUMG00000175536.3 pseudo_consens +64152 chrX HAVANA gene 153642492 153651326 2776.0 + 0 ENSG00000130829.17 protein_coding DUSP9 2 OTTHUMG00000024211.6 +64153 chrX HAVANA gene 153662162 153662692 531.0 + 0 ENSG00000237793.3 processed_pseudogene RPL18AP16 1 OTTHUMG00000024214.3 pseudo_consens +64154 chrX ENSEMBL gene 153666226 153666510 285.0 + 0 ENSG00000244335.3 misc_RNA RN7SL687P 3 +64155 chrX HAVANA gene 153669730 153689010 5091.0 - 0 ENSG00000130822.15 protein_coding PNCK 1 OTTHUMG00000024216.7 +64156 chrX HAVANA gene 153688099 153696593 5498.0 + 0 ENSG00000130821.15 protein_coding SLC6A8 2 OTTHUMG00000024208.3 +64157 chrX HAVANA gene 153700492 153724746 3533.0 - 0 ENSG00000185825.16 protein_coding BCAP31 2 OTTHUMG00000024218.4 +64158 chrX HAVANA gene 153724868 153744762 4233.0 + 0 ENSG00000101986.11 protein_coding ABCD1 2 OTTHUMG00000024215.3 +64159 chrX HAVANA gene 153735626 153766478 1087.0 - 0 ENSG00000232725.1 antisense U52111.1 2 OTTHUMG00000024213.1 +64160 chrX HAVANA gene 153764196 153779346 7007.0 + 0 ENSG00000198753.11 protein_coding PLXNB3 2 OTTHUMG00000024217.2 overlapping_locus +64161 chrX HAVANA gene 153776412 153785732 4744.0 + 0 ENSG00000184343.10 protein_coding SRPK3 1 OTTHUMG00000024207.3 overlapping_locus +64162 chrX HAVANA gene 153785766 153794523 2717.0 - 0 ENSG00000067829.18 protein_coding IDH3G 2 OTTHUMG00000024219.30 +64163 chrX HAVANA gene 153793516 153798505 4590.0 + 0 ENSG00000180879.13 protein_coding SSR4 2 OTTHUMG00000024212.2 +64164 chrX HAVANA gene 153802166 153830565 4341.0 - 0 ENSG00000067840.12 protein_coding PDZD4 2 OTTHUMG00000024209.4 +64165 chrX HAVANA gene 153841251 153841565 315.0 + 0 ENSG00000184844.6 processed_pseudogene CYCSP45 1 OTTHUMG00000024210.2 pseudo_consens +64166 chrX HAVANA gene 153861514 153886174 7270.0 - 0 ENSG00000198910.13 protein_coding L1CAM 1 OTTHUMG00000192414.1 overlapping_locus +64167 chrX HAVANA gene 153880672 153888990 1392.0 + 0 ENSG00000273769.5 processed_transcript LCA10 2 OTTHUMG00000058499.2 +64168 chrX HAVANA gene 153902531 153907166 2231.0 + 0 ENSG00000126895.14 protein_coding AVPR2 2 OTTHUMG00000024227.6 +64169 chrX HAVANA gene 153872221 153909223 593.0 - 0 ENSG00000284987.1 protein_coding U52112.1 2 OTTHUMG00000024221.15 overlapping_locus +64170 chrX HAVANA gene 153907367 153934999 5580.0 - 0 ENSG00000089820.15 protein_coding ARHGAP4 2 OTTHUMG00000024226.47 overlapping_locus +64171 chrX HAVANA gene 153929242 153935223 4742.0 - 0 ENSG00000102030.15 protein_coding NAA10 1 OTTHUMG00000024225.7 overlapping_locus +64172 chrX HAVANA gene 153935263 153944691 2057.0 - 0 ENSG00000102032.12 protein_coding RENBP 2 OTTHUMG00000024224.9 +64173 chrX HAVANA gene 153969325 153970087 350.0 + 0 ENSG00000235802.1 antisense HCFC1-AS1 2 OTTHUMG00000024223.1 +64174 chrX HAVANA gene 153947553 153971807 9004.0 - 0 ENSG00000172534.13 protein_coding HCFC1 1 OTTHUMG00000024222.5 +64175 chrX ENSEMBL gene 153981098 153981176 79.0 - 0 ENSG00000283694.1 miRNA MIR3202-2 3 +64176 chrX ENSEMBL gene 153981097 153981177 81.0 + 0 ENSG00000265176.1 miRNA MIR3202-1 3 +64177 chrX HAVANA gene 153972327 153983195 1924.0 + 0 ENSG00000177854.7 protein_coding TMEM187 2 OTTHUMG00000024220.6 ncRNA_host +64178 chrX HAVANA gene 154010500 154019980 4001.0 - 0 ENSG00000184216.13 protein_coding IRAK1 1 OTTHUMG00000024228.45 +64179 chrX ENSEMBL gene 154019920 154019989 70.0 - 0 ENSG00000284286.1 miRNA MIR718 3 +64180 chrX HAVANA gene 154021573 154137103 18366.0 - 0 ENSG00000169057.21 protein_coding MECP2 2 OTTHUMG00000024229.15 +64181 chrX HAVANA gene 154144224 154159032 1261.0 + 0 ENSG00000102076.9 protein_coding OPN1LW 1 OTTHUMG00000034295.6 +64182 chrX HAVANA gene 154159357 154176349 1221.0 - 0 ENSG00000277008.1 unprocessed_pseudogene TEX28P2 2 OTTHUMG00000022713.4 +64183 chrX HAVANA gene 154182596 154196135 1272.0 + 0 ENSG00000268221.5 protein_coding OPN1MW 2 OTTHUMG00000022652.8 +64184 chrX HAVANA gene 154196471 154213487 1221.0 - 0 ENSG00000274962.1 unprocessed_pseudogene TEX28P1 2 OTTHUMG00000024230.4 +64185 chrX HAVANA gene 154219756 154233286 1261.0 + 0 ENSG00000166160.9 protein_coding OPN1MW2 2 OTTHUMG00000024231.5 +64186 chrX HAVANA gene 154233615 154251288 1216.0 - 0 ENSG00000277009.1 unprocessed_pseudogene AC244097.1 2 OTTHUMG00000188366.1 +64187 chrX HAVANA gene 154257538 154271805 1998.0 + 0 ENSG00000269433.3 protein_coding OPN1MW3 2 OTTHUMG00000189499.1 +64188 chrX HAVANA gene 154271265 154295853 1862.0 - 0 ENSG00000278057.4 protein_coding TEX28 2 OTTHUMG00000022654.8 +64189 chrX HAVANA gene 154295671 154330350 3650.0 + 0 ENSG00000007350.16 protein_coding TKTL1 1 OTTHUMG00000022707.8 +64190 chrX HAVANA gene 154333960 154335037 341.0 - 0 ENSG00000231830.1 antisense AC245140.1 2 OTTHUMG00000022655.2 +64191 chrX HAVANA gene 154348524 154374638 10585.0 - 0 ENSG00000196924.15 protein_coding FLNA 1 OTTHUMG00000022712.30 +64192 chrX HAVANA gene 154374595 154376934 680.0 + 0 ENSG00000285018.1 antisense AC245140.3 2 OTTHUMG00000192605.1 +64193 chrX HAVANA gene 154379197 154381523 2020.0 + 0 ENSG00000102119.10 protein_coding EMD 2 OTTHUMG00000033186.5 +64194 chrX HAVANA gene 154396878 154398816 1939.0 - 0 ENSG00000280195.1 antisense AC245140.2 2 OTTHUMG00000057501.1 +64195 chrX ENSEMBL gene 154400281 154400415 135.0 + 0 ENSG00000207165.1 snoRNA SNORA70 3 +64196 chrX HAVANA gene 154389955 154409168 4825.0 + 0 ENSG00000147403.16 protein_coding RPL10 1 OTTHUMG00000033189.13 ncRNA_host +64197 chrX HAVANA gene 154401238 154412112 4130.0 - 0 ENSG00000013563.13 protein_coding DNASE1L1 1 OTTHUMG00000033188.29 +64198 chrX HAVANA gene 154411518 154421726 4721.0 + 0 ENSG00000102125.15 protein_coding TAZ 2 OTTHUMG00000033190.21 +64199 chrX HAVANA gene 154424380 154428479 598.0 - 0 ENSG00000197180.2 lincRNA CH17-340M24.3 2 OTTHUMG00000189028.1 +64200 chrX HAVANA gene 154428632 154436516 4884.0 + 0 ENSG00000071553.16 protein_coding ATP6AP1 1 OTTHUMG00000033291.10 +64201 chrX HAVANA gene 154436913 154443467 5256.0 + 0 ENSG00000203879.11 protein_coding GDI1 2 OTTHUMG00000033293.9 +64202 chrX ENSEMBL gene 154450320 154450386 67.0 + 0 ENSG00000276350.1 miRNA MIR6858 3 +64203 chrX HAVANA gene 154444126 154450654 2567.0 + 0 ENSG00000071859.14 protein_coding FAM50A 1 OTTHUMG00000033292.11 ncRNA_host +64204 chrX HAVANA gene 154458281 154477779 11710.0 + 0 ENSG00000130827.6 protein_coding PLXNA3 2 OTTHUMG00000033290.6 +64205 chrX HAVANA gene 154477769 154479257 949.0 - 0 ENSG00000196976.7 protein_coding LAGE3 2 OTTHUMG00000033294.4 +64206 chrX HAVANA gene 154483717 154486670 2630.0 - 0 ENSG00000102178.12 protein_coding UBL4A 2 OTTHUMG00000013370.5 +64207 chrX HAVANA gene 154487306 154490690 2247.0 - 0 ENSG00000126903.15 protein_coding SLC10A3 2 OTTHUMG00000013369.7 +64208 chrX ENSEMBL gene 154495815 154496113 299.0 - 0 ENSG00000264484.2 misc_RNA RN7SL697P 3 +64209 chrX HAVANA gene 154506159 154516242 5098.0 - 0 ENSG00000071889.16 protein_coding FAM3A 2 OTTHUMG00000013418.20 +64210 chrX HAVANA gene 154517840 154518631 792.0 - 0 ENSG00000261773.1 sense_overlapping AC244090.2 2 OTTHUMG00000175554.3 +64211 chrX HAVANA gene 154531390 154547572 3995.0 - 0 ENSG00000160211.17 protein_coding G6PD 1 OTTHUMG00000024237.11 +64212 chrX HAVANA gene 154541199 154565046 3529.0 + 0 ENSG00000269335.5 protein_coding IKBKG 2 OTTHUMG00000024234.17 +64213 chrX HAVANA gene 154571248 154571960 713.0 + 0 ENSG00000279245.1 lincRNA FAM223A 2 OTTHUMG00000057425.3 +64214 chrX HAVANA gene 154580926 154581998 1073.0 + 0 ENSG00000273041.1 processed_pseudogene ATF4P2 1 OTTHUMG00000188664.2 pseudo_consens +64215 chrX HAVANA gene 154585143 154586821 993.0 + 0 ENSG00000268651.2 protein_coding CTAG1A 2 OTTHUMG00000024238.3 +64216 chrX HAVANA gene 154605858 154605950 93.0 + 0 ENSG00000232155.1 processed_pseudogene AC244090.1 2 OTTHUMG00000101273.1 +64217 chrX HAVANA gene 154617609 154619282 998.0 - 0 ENSG00000184033.13 protein_coding CTAG1B 2 OTTHUMG00000024232.2 +64218 chrX HAVANA gene 154620096 154620171 76.0 + 0 ENSG00000273773.1 unprocessed_pseudogene AC244107.2 2 OTTHUMG00000188045.1 +64219 chrX HAVANA gene 154622428 154623500 1073.0 - 0 ENSG00000213338.3 processed_pseudogene ATF4P1 1 OTTHUMG00000189741.1 pseudo_consens +64220 chrX HAVANA gene 154632470 154633182 713.0 - 0 ENSG00000272681.2 lincRNA FAM223B 2 OTTHUMG00000188665.1 +64221 chrX HAVANA gene 154639978 154648275 1073.0 - 0 ENSG00000275882.1 unprocessed_pseudogene IKBKGP1 2 OTTHUMG00000188230.2 +64222 chrX HAVANA gene 154651972 154653579 993.0 - 0 ENSG00000126890.13 protein_coding CTAG2 2 OTTHUMG00000024239.3 +64223 chrX HAVANA gene 154654546 154655325 332.0 + 0 ENSG00000226141.1 unprocessed_pseudogene AC244107.1 2 OTTHUMG00000040487.2 +64224 chrX HAVANA gene 154658741 154659643 903.0 - 0 ENSG00000237619.2 unprocessed_pseudogene OR3B1P 2 OTTHUMG00000024240.3 +64225 chrX HAVANA gene 154675249 154751583 5272.0 - 0 ENSG00000160219.11 protein_coding GAB3 1 OTTHUMG00000024245.10 +64226 chrX ENSEMBL gene 154768596 154768656 61.0 + 0 ENSG00000284450.1 miRNA MIR664B 3 +64227 chrX ENSEMBL gene 154768528 154768659 132.0 + 0 ENSG00000206948.1 snoRNA SNORA36A 3 +64228 chrX ENSEMBL gene 154774998 154775126 129.0 + 0 ENSG00000206693.1 snoRNA SNORA56 3 +64229 chrX HAVANA gene 154762742 154777689 4203.0 + 0 ENSG00000130826.17 protein_coding DKC1 1 OTTHUMG00000024242.10 ncRNA_host +64230 chrX HAVANA gene 154817099 154817401 303.0 - 0 ENSG00000229237.2 processed_pseudogene HMGN1P37 1 OTTHUMG00000024241.4 pseudo_consens,overlapping_locus +64231 chrX HAVANA gene 154778684 154821007 5396.0 - 0 ENSG00000130830.14 protein_coding MPP1 2 OTTHUMG00000024244.9 overlapping_locus +64232 chrX HAVANA gene 154823348 154834662 1225.0 - 0 ENSG00000203870.5 protein_coding SMIM9 1 OTTHUMG00000024243.3 +64233 chrX HAVANA gene 154884972 154885558 587.0 + 0 ENSG00000274183.1 protein_coding H2AFB1 2 OTTHUMG00000034291.2 +64234 chrX ENSEMBL gene 154887360 154887458 99.0 - 0 ENSG00000221533.1 miRNA MIR1184-1 3 +64235 chrX HAVANA gene 154886349 154888061 1713.0 + 0 ENSG00000277203.1 protein_coding F8A1 2 OTTHUMG00000013500.3 +64236 chrX HAVANA gene 154897561 154898092 532.0 - 0 ENSG00000224069.1 processed_pseudogene BX842559.1 2 OTTHUMG00000128681.1 overlapping_locus +64237 chrX HAVANA gene 154908885 154919103 1131.0 - 0 ENSG00000237859.2 unprocessed_pseudogene EEF1A1P31 1 OTTHUMG00000013503.3 pseudo_consens,overlapping_locus +64238 chrX HAVANA gene 154919578 154920182 605.0 - 0 ENSG00000233688.1 processed_pseudogene BX842559.2 1 OTTHUMG00000013501.1 pseudo_consens,overlapping_locus +64239 chrX HAVANA gene 154835788 155026940 9609.0 - 0 ENSG00000185010.14 protein_coding F8 1 OTTHUMG00000022688.15 ncRNA_host,overlapping_locus +64240 chrX HAVANA gene 155025980 155060303 10252.0 + 0 ENSG00000165775.17 protein_coding FUNDC2 2 OTTHUMG00000013504.5 +64241 chrX HAVANA gene 155061622 155071362 1539.0 - 0 ENSG00000182712.15 protein_coding CMC4 2 OTTHUMG00000158504.3 overlapping_locus +64242 chrX HAVANA gene 155071420 155123074 3182.0 + 0 ENSG00000185515.14 protein_coding BRCC3 2 OTTHUMG00000022658.6 +64243 chrX HAVANA gene 155061622 155147937 2990.0 - 0 ENSG00000214827.9 protein_coding MTCP1 2 OTTHUMG00000156241.4 overlapping_locus +64244 chrX HAVANA gene 155137111 155156503 755.0 + 0 ENSG00000235991.4 unprocessed_pseudogene BX293995.1 2 OTTHUMG00000034290.1 +64245 chrX HAVANA gene 155212921 155213638 335.0 - 0 ENSG00000224978.1 processed_pseudogene BX682237.1 2 OTTHUMG00000022668.1 +64246 chrX HAVANA gene 155197007 155239817 2018.0 + 0 ENSG00000155959.10 protein_coding VBP1 2 OTTHUMG00000022666.3 +64247 chrX HAVANA gene 155258241 155264589 3505.0 - 0 ENSG00000155961.4 protein_coding RAB39B 2 OTTHUMG00000022659.2 +64248 chrX HAVANA gene 155290360 155291353 994.0 - 0 ENSG00000225008.1 processed_pseudogene AC234781.2 1 OTTHUMG00000022667.1 pseudo_consens,overlapping_locus +64249 chrX HAVANA gene 155292169 155293432 973.0 + 0 ENSG00000228986.1 processed_pseudogene AC234781.3 1 OTTHUMG00000022665.2 pseudo_consens +64250 chrX HAVANA gene 155310247 155310490 244.0 + 0 ENSG00000230491.1 processed_pseudogene AC234781.4 2 OTTHUMG00000022664.1 +64251 chrX HAVANA gene 155276211 155334657 2840.0 - 0 ENSG00000155962.12 protein_coding CLIC2 1 OTTHUMG00000022660.4 overlapping_locus +64252 chrX HAVANA gene 155348752 155349799 432.0 + 0 ENSG00000230578.3 transcribed_unprocessed_pseudogene AC234781.5 2 OTTHUMG00000022663.4 +64253 chrX HAVANA gene 155334858 155351957 1721.0 - 0 ENSG00000224216.1 antisense AC234781.1 2 OTTHUMG00000022662.2 +64254 chrX HAVANA gene 155380787 155381134 348.0 + 0 ENSG00000277858.1 protein_coding H2AFB2 2 OTTHUMG00000034292.2 +64255 chrX ENSEMBL gene 155383100 155383198 99.0 - 0 ENSG00000221190.1 miRNA MIR1184-2 3 +64256 chrX HAVANA gene 155382115 155383230 1116.0 + 0 ENSG00000274791.1 protein_coding F8A2 2 OTTHUMG00000034293.2 +64257 chrX ENSEMBL gene 155457517 155457615 99.0 + 0 ENSG00000221603.1 miRNA MIR1184-3 3 +64258 chrX HAVANA gene 155456914 155458672 1759.0 - 0 ENSG00000277150.1 protein_coding F8A3 2 OTTHUMG00000034289.1 +64259 chrX HAVANA gene 155459415 155460005 591.0 - 0 ENSG00000277745.1 protein_coding H2AFB3 2 OTTHUMG00000022670.2 +64260 chrX HAVANA gene 155468286 155487046 553.0 + 0 ENSG00000225393.1 antisense BX571846.1 2 OTTHUMG00000022671.1 overlapping_locus +64261 chrX HAVANA gene 155466540 155611616 1845.0 + 0 ENSG00000224533.4 antisense TMLHE-AS1 2 OTTHUMG00000022672.1 overlapping_locus +64262 chrX HAVANA gene 155490115 155669944 3922.0 - 0 ENSG00000185973.10 protein_coding TMLHE 2 OTTHUMG00000022674.2 +64263 chrX HAVANA gene 155767812 155782459 9019.0 + 0 ENSG00000168939.11 protein_coding SPRY3 2 OTTHUMG00000022675.3 +64264 chrX HAVANA gene 155828585 155829576 992.0 - 0 ENSG00000237801.6 processed_pseudogene AMD1P2 1 OTTHUMG00000022673.2 pseudo_consens +64265 chrX HAVANA gene 155875636 155875885 250.0 + 0 ENSG00000237040.6 processed_pseudogene DPH3P2 1 OTTHUMG00000022680.1 pseudo_consens +64266 chrX HAVANA gene 155881293 155943769 2667.0 + 0 ENSG00000124333.15 protein_coding VAMP7 2 OTTHUMG00000022679.2 +64267 chrX HAVANA gene 155978992 155979325 334.0 - 0 ENSG00000228410.6 processed_pseudogene ELOCP24 1 OTTHUMG00000040493.1 pseudo_consens +64268 chrX HAVANA gene 155985370 155986249 880.0 - 0 ENSG00000223484.7 processed_pseudogene TRPC6P 1 OTTHUMG00000022681.1 pseudo_consens +64269 chrX HAVANA gene 155997581 156010817 2504.0 + 0 ENSG00000124334.17 protein_coding IL9R 2 OTTHUMG00000022720.1 overlapping_locus +64270 chrX HAVANA gene 156014623 156016837 1054.0 - 0 ENSG00000185203.12 antisense WASIR1 2 OTTHUMG00000022676.3 +64271 chrX HAVANA gene 156004218 156022236 773.0 + 0 ENSG00000270726.6 processed_transcript AJ271736.1 2 OTTHUMG00000184987.2 overlapping_locus +64272 chrX HAVANA gene 156020826 156025710 4618.0 + 0 ENSG00000182484.15 transcribed_unprocessed_pseudogene WASH6P 2 OTTHUMG00000022677.5 overlapping_locus +64273 chrX HAVANA gene 156025664 156027877 1306.0 - 0 ENSG00000227159.8 unprocessed_pseudogene DDX11L16 2 OTTHUMG00000022678.1 +64274 chrY HAVANA gene 253743 255091 259.0 + 0 ENSG00000228572.7_PAR_Y unprocessed_pseudogene AL954722.1 2 OTTHUMG00000046372.2 PAR +64275 chrY HAVANA gene 276322 303356 6191.0 + 0 ENSG00000182378.13_PAR_Y protein_coding PLCXD1 2 OTTHUMG00000022693.5 PAR +64276 chrY HAVANA gene 304529 318819 2964.0 - 0 ENSG00000178605.13_PAR_Y protein_coding GTPBP6 2 OTTHUMG00000022694.3 PAR +64277 chrY HAVANA gene 320990 321851 428.0 + 0 ENSG00000226179.6_PAR_Y antisense LINC00685 2 OTTHUMG00000021049.1 PAR +64278 chrY HAVANA gene 333963 386955 9015.0 - 0 ENSG00000167393.17_PAR_Y protein_coding PPP2R3B 2 OTTHUMG00000021052.3 PAR +64279 chrY ENSEMBL gene 388100 388389 290.0 - 0 ENSG00000275287.5_PAR_Y misc_RNA RF00017 3 PAR +64280 chrY HAVANA gene 386980 405579 484.0 + 0 ENSG00000281849.3_PAR_Y antisense AL732314.6 2 OTTHUMG00000189992.1 PAR +64281 chrY HAVANA gene 419157 421980 515.0 + 0 ENSG00000280767.3_PAR_Y lincRNA AL732314.4 2 OTTHUMG00000189993.1 PAR +64282 chrY HAVANA gene 523775 524102 328.0 - 0 ENSG00000234958.6_PAR_Y processed_pseudogene FABP5P13 1 OTTHUMG00000021050.1 pseudo_consens,PAR +64283 chrY HAVANA gene 545236 545352 117.0 - 0 ENSG00000229232.6_PAR_Y processed_pseudogene KRT18P53 2 OTTHUMG00000021051.1 PAR +64284 chrY HAVANA gene 624344 659411 4384.0 + 0 ENSG00000185960.14_PAR_Y protein_coding SHOX 2 OTTHUMG00000021053.5 PAR +64285 chrY HAVANA gene 990221 994365 588.0 + 0 ENSG00000237531.6_PAR_Y lincRNA AL672277.1 2 OTTHUMG00000021054.1 PAR +64286 chrY HAVANA gene 1008503 1010101 730.0 - 0 ENSG00000225661.7_PAR_Y processed_pseudogene RPL14P5 1 OTTHUMG00000021055.1 pseudo_consens,PAR +64287 chrY HAVANA gene 1187549 1212750 2010.0 - 0 ENSG00000205755.11_PAR_Y protein_coding CRLF2 2 OTTHUMG00000067432.2 PAR +64288 chrY ENSEMBL gene 1293918 1293992 75.0 + 0 ENSG00000265658.6_PAR_Y miRNA MIR3690 3 PAR +64289 chrY ENSEMBL gene 1300256 1300375 120.0 - 0 ENSG00000223274.6_PAR_Y rRNA_pseudogene RNA5SP498 3 PAR +64290 chrY HAVANA gene 1268800 1310381 3830.0 + 0 ENSG00000198223.16_PAR_Y protein_coding CSF2RA 2 OTTHUMG00000012533.8 ncRNA_host,PAR +64291 chrY HAVANA gene 1336616 1382689 1710.0 + 0 ENSG00000185291.11_PAR_Y protein_coding IL3RA 2 OTTHUMG00000021059.4 PAR +64292 chrY HAVANA gene 1386152 1392724 2164.0 - 0 ENSG00000169100.13_PAR_Y protein_coding SLC25A6 2 OTTHUMG00000021058.1 PAR +64293 chrY HAVANA gene 1396427 1399402 592.0 + 0 ENSG00000236871.7_PAR_Y lincRNA LINC00106 2 OTTHUMG00000021061.3 PAR +64294 chrY HAVANA gene 1401769 1414028 1335.0 + 0 ENSG00000236017.8_PAR_Y antisense ASMTL-AS1 2 OTTHUMG00000021056.3 PAR +64295 chrY HAVANA gene 1403139 1453762 3506.0 - 0 ENSG00000169093.15_PAR_Y protein_coding ASMTL 2 OTTHUMG00000021057.1 PAR +64296 chrY HAVANA gene 1462572 1537107 4459.0 - 0 ENSG00000182162.10_PAR_Y protein_coding P2RY8 2 OTTHUMG00000021060.2 retrogene,PAR +64297 chrY HAVANA gene 1591593 1602514 4075.0 + 0 ENSG00000197976.11_PAR_Y protein_coding AKAP17A 2 OTTHUMG00000021063.3 PAR +64298 chrY HAVANA gene 1615001 1643081 1846.0 + 0 ENSG00000196433.12_PAR_Y protein_coding ASMT 2 OTTHUMG00000021065.2 PAR +64299 chrY HAVANA gene 1732584 1763212 1001.0 + 0 ENSG00000223511.7_PAR_Y lincRNA AL683807.1 2 OTTHUMG00000021062.3 PAR +64300 chrY HAVANA gene 1767347 1768776 548.0 + 0 ENSG00000234622.6_PAR_Y lincRNA AL683807.2 2 OTTHUMG00000021064.1 PAR +64301 chrY HAVANA gene 2334295 2336410 651.0 - 0 ENSG00000223571.6_PAR_Y sense_intronic DHRSX-IT1 2 OTTHUMG00000067406.1 overlapping_locus,PAR +64302 chrY HAVANA gene 2486414 2500967 4755.0 - 0 ENSG00000214717.11_PAR_Y protein_coding ZBED1 2 OTTHUMG00000021069.8 overlapping_locus,PAR +64303 chrY HAVANA gene 2219516 2502805 3620.0 - 0 ENSG00000169084.13_PAR_Y protein_coding DHRSX 2 OTTHUMG00000021068.4 overlapping_locus,PAR +64304 chrY ENSEMBL gene 2609191 2609254 64.0 + 0 ENSG00000277120.5_PAR_Y miRNA MIR6089 3 PAR +64305 chrY HAVANA gene 2612988 2615347 1340.0 - 0 ENSG00000230542.6_PAR_Y lincRNA LINC00102 2 OTTHUMG00000021072.1 PAR +64306 chrY HAVANA gene 2609348 2657229 5921.0 + 0 ENSG00000223773.7_PAR_Y transcribed_unprocessed_pseudogene CD99P1 2 OTTHUMG00000021071.4 PAR +64307 chrY HAVANA gene 2691133 2741309 4912.0 + 0 ENSG00000002586.19_PAR_Y protein_coding CD99 2 OTTHUMG00000021073.11 PAR +64308 chrY ENSEMBL gene 2784749 2784853 105.0 + 0 ENSG00000251841.1 snRNA RNU6-1334P 3 +64309 chrY HAVANA gene 2786855 2787699 845.0 - 0 ENSG00000184895.7 protein_coding SRY 2 OTTHUMG00000036084.1 +64310 chrY HAVANA gene 2789827 2790328 502.0 + 0 ENSG00000237659.1 processed_pseudogene RNASEH2CP1 1 OTTHUMG00000036081.1 pseudo_consens,overlapping_locus +64311 chrY HAVANA gene 2827982 2828218 237.0 + 0 ENSG00000232195.1 processed_pseudogene TOMM22P2 1 OTTHUMG00000036083.2 pseudo_consens,overlapping_locus +64312 chrY HAVANA gene 2881683 2883652 1191.0 - 0 ENSG00000227289.1 unprocessed_pseudogene HSFY3P 2 OTTHUMG00000036161.2 +64313 chrY HAVANA gene 2929001 2931120 1089.0 - 0 ENSG00000229163.2 processed_pseudogene NAP1L1P2 1 OTTHUMG00000036154.2 pseudo_consens +64314 chrY HAVANA gene 2841486 2932000 2275.0 + 0 ENSG00000129824.15 protein_coding RPS4Y1 2 OTTHUMG00000036152.4 overlapping_locus +64315 chrY HAVANA gene 2934406 2934771 366.0 - 0 ENSG00000278847.1 lincRNA AC006157.1 2 OTTHUMG00000188134.1 +64316 chrY HAVANA gene 2935281 2982506 5527.0 + 0 ENSG00000067646.11 protein_coding ZFY 2 OTTHUMG00000036159.3 +64317 chrY HAVANA gene 2995067 2995273 207.0 - 0 ENSG00000223600.1 processed_pseudogene EEF1A1P41 1 OTTHUMG00000036158.1 pseudo_consens,overlapping_locus +64318 chrY HAVANA gene 2966844 3002626 796.0 - 0 ENSG00000233070.1 antisense ZFY-AS1 2 OTTHUMG00000036156.1 overlapping_locus +64319 chrY HAVANA gene 3002912 3102272 775.0 + 0 ENSG00000231535.5 lincRNA LINC00278 2 OTTHUMG00000036157.1 +64320 chrY HAVANA gene 3293808 3294826 1019.0 + 0 ENSG00000234652.1 processed_pseudogene AGPAT5P1 1 OTTHUMG00000036179.1 pseudo_consens +64321 chrY HAVANA gene 3549652 3549810 159.0 - 0 ENSG00000216777.1 processed_pseudogene PRRC2CP1 2 OTTHUMG00000036160.1 +64322 chrY HAVANA gene 3579041 3580041 1001.0 + 0 ENSG00000176679.8 protein_coding TGIF2LY 2 OTTHUMG00000036153.3 +64323 chrY HAVANA gene 3682805 3683868 1064.0 + 0 ENSG00000232927.1 processed_pseudogene USP12PY 1 OTTHUMG00000036183.1 pseudo_consens +64324 chrY HAVANA gene 3777997 3779546 1550.0 - 0 ENSG00000225653.1 processed_pseudogene RNF19BPY 1 OTTHUMG00000036180.1 pseudo_consens +64325 chrY HAVANA gene 3851224 3852869 1646.0 - 0 ENSG00000218410.1 processed_pseudogene AC012078.1 2 OTTHUMG00000036181.2 +64326 chrY HAVANA gene 3866306 3866722 417.0 - 0 ENSG00000229518.1 processed_pseudogene UBE2V1P3 1 OTTHUMG00000036182.1 pseudo_consens +64327 chrY HAVANA gene 4036497 4100320 559.0 + 0 ENSG00000229308.1 lincRNA AC010737.1 2 OTTHUMG00000036214.1 +64328 chrY ENSEMBL gene 4174985 4175090 106.0 - 0 ENSG00000252900.1 snRNA RNU6-303P 3 +64329 chrY HAVANA gene 4801685 4802848 1164.0 - 0 ENSG00000225878.1 processed_pseudogene SERBP1P2 1 OTTHUMG00000036215.1 pseudo_consens +64330 chrY HAVANA gene 4993858 4999650 844.0 - 0 ENSG00000277930.1 lincRNA AC010722.1 2 OTTHUMG00000188135.1 +64331 chrY ENSEMBL gene 5019076 5019266 191.0 + 0 ENSG00000252468.1 snRNA RNU2-57P 3 +64332 chrY HAVANA gene 5207215 5208069 855.0 - 0 ENSG00000231341.1 processed_pseudogene VDAC1P6 1 OTTHUMG00000035151.1 pseudo_consens +64333 chrY HAVANA gene 5337745 5338964 1220.0 - 0 ENSG00000235001.3 processed_pseudogene EIF4A1P2 1 OTTHUMG00000035195.1 pseudo_consens +64334 chrY HAVANA gene 5573145 5574431 1287.0 + 0 ENSG00000214207.2 processed_pseudogene KRT18P10 1 OTTHUMG00000035193.1 pseudo_consens,overlapping_locus +64335 chrY HAVANA gene 5634480 5634655 176.0 - 0 ENSG00000278585.1 processed_pseudogene SNX3P1Y 2 OTTHUMG00000187995.1 +64336 chrY HAVANA gene 5000226 5742224 11672.0 + 0 ENSG00000099715.14 protein_coding PCDH11Y 2 OTTHUMG00000035105.6 ncRNA_host,overlapping_locus +64337 chrY HAVANA gene 5793300 5793737 438.0 - 0 ENSG00000235175.1 processed_pseudogene RPL26P37 1 OTTHUMG00000035194.1 pseudo_consens +64338 chrY HAVANA gene 5887504 5888740 1237.0 + 0 ENSG00000285470.1 processed_pseudogene AC010977.1 2 OTTHUMG00000192471.1 +64339 chrY HAVANA gene 6158802 6159265 464.0 + 0 ENSG00000237195.1 processed_pseudogene DLGAP5P1 1 OTTHUMG00000036007.1 pseudo_consens +64340 chrY HAVANA gene 6242446 6245283 858.0 - 0 ENSG00000250204.2 transcribed_unprocessed_pseudogene TTTY23B 2 OTTHUMG00000040947.2 +64341 chrY HAVANA gene 6246223 6249019 1941.0 + 0 ENSG00000168757.12 protein_coding TSPY2 2 OTTHUMG00000040957.3 +64342 chrY HAVANA gene 6256267 6263953 2551.0 - 0 ENSG00000234830.7 transcribed_unprocessed_pseudogene FAM197Y9 2 OTTHUMG00000040949.2 +64343 chrY HAVANA gene 6266593 6269275 1045.0 + 0 ENSG00000238235.1 unprocessed_pseudogene TSPY11P 2 OTTHUMG00000040946.1 +64344 chrY HAVANA gene 6273579 6274065 292.0 - 0 ENSG00000275352.1 unprocessed_pseudogene AC006335.3 2 OTTHUMG00000187996.1 +64345 chrY HAVANA gene 6303957 6305074 509.0 - 0 ENSG00000234583.1 unprocessed_pseudogene TSPY19P 2 OTTHUMG00000040953.1 +64346 chrY HAVANA gene 6306042 6307920 547.0 + 0 ENSG00000235094.2 unprocessed_pseudogene AC006335.1 2 OTTHUMG00000040948.1 overlapping_locus +64347 chrY HAVANA gene 6307710 6309587 330.0 + 0 ENSG00000242879.1 unprocessed_pseudogene AC006335.2 2 OTTHUMG00000040950.1 overlapping_locus +64348 chrY HAVANA gene 6328052 6343323 1034.0 + 0 ENSG00000223744.1 unprocessed_pseudogene RBMY2GP 2 OTTHUMG00000040954.1 +64349 chrY HAVANA gene 6357219 6361413 448.0 - 0 ENSG00000229643.1 lincRNA LINC00280 2 OTTHUMG00000040955.1 +64350 chrY HAVANA gene 6390431 6411564 910.0 + 0 ENSG00000129816.5 lincRNA TTTY1B 2 OTTHUMG00000040984.1 +64351 chrY HAVANA gene 6406244 6424145 3168.0 - 0 ENSG00000212856.5 lincRNA TTTY2B 2 OTTHUMG00000040980.1 +64352 chrY HAVANA gene 6443434 6447077 307.0 + 0 ENSG00000237563.1 lincRNA TTTY21B 2 OTTHUMG00000040983.1 +64353 chrY HAVANA gene 6449468 6457906 1466.0 + 0 ENSG00000147753.9 lincRNA TTTY7 2 OTTHUMG00000040981.1 +64354 chrY HAVANA gene 6470773 6473630 708.0 - 0 ENSG00000185700.10 lincRNA TTTY8B 2 OTTHUMG00000040982.1 +64355 chrY HAVANA gene 6492976 6496757 269.0 - 0 ENSG00000235895.1 unprocessed_pseudogene AC010154.1 2 OTTHUMG00000040985.1 +64356 chrY HAVANA gene 6520463 6520929 467.0 + 0 ENSG00000232620.1 unprocessed_pseudogene TSPY17P 2 OTTHUMG00000036523.1 +64357 chrY HAVANA gene 6718962 6719180 219.0 - 0 ENSG00000224953.1 processed_pseudogene SRIP3 1 OTTHUMG00000035294.1 pseudo_consens +64358 chrY HAVANA gene 6789153 6789344 192.0 + 0 ENSG00000274365.1 processed_pseudogene AC013412.1 2 OTTHUMG00000187997.1 +64359 chrY HAVANA gene 6837707 6838252 546.0 + 0 ENSG00000233634.1 processed_pseudogene GOT2P5 1 OTTHUMG00000035295.1 pseudo_consens +64360 chrY HAVANA gene 6865918 6874027 844.0 - 0 ENSG00000099721.13 protein_coding AMELY 2 OTTHUMG00000035297.3 +64361 chrY HAVANA gene 6900753 6901372 322.0 + 0 ENSG00000237701.1 processed_pseudogene ATP5PFP1 1 OTTHUMG00000035296.1 pseudo_consens +64362 chrY HAVANA gene 6918682 6920791 2110.0 + 0 ENSG00000273906.1 sense_intronic AC011297.1 2 OTTHUMG00000188136.1 +64363 chrY HAVANA gene 6910686 7091683 2407.0 + 0 ENSG00000092377.13 protein_coding TBL1Y 2 OTTHUMG00000035299.1 +64364 chrY HAVANA gene 7100733 7106502 205.0 - 0 ENSG00000232583.1 unprocessed_pseudogene GPR143P 2 OTTHUMG00000035300.1 +64365 chrY ENSEMBL gene 7324297 7324595 299.0 - 0 ENSG00000252633.1 misc_RNA RN7SKP282 3 +64366 chrY ENSEMBL gene 7341531 7341642 112.0 + 0 ENSG00000251996.1 misc_RNA RF00019 3 +64367 chrY ENSEMBL gene 7378672 7378779 108.0 + 0 ENSG00000252155.1 snRNA RNU6-941P 3 +64368 chrY HAVANA gene 7273972 7381548 7674.0 + 0 ENSG00000099725.14 transcribed_unprocessed_pseudogene PRKY 2 OTTHUMG00000035301.3 +64369 chrY ENSEMBL gene 7423054 7423158 105.0 - 0 ENSG00000252472.1 snRNA RNU6-521P 3 +64370 chrY HAVANA gene 7656968 7657352 385.0 + 0 ENSG00000275280.1 processed_pseudogene AC007274.3 2 OTTHUMG00000187999.1 +64371 chrY HAVANA gene 7671743 7676024 720.0 - 0 ENSG00000238073.1 unprocessed_pseudogene RBMY2HP 1 OTTHUMG00000041010.1 pseudo_consens +64372 chrY HAVANA gene 7678899 7681028 662.0 + 0 ENSG00000223422.1 unprocessed_pseudogene AC007274.1 2 OTTHUMG00000041011.1 +64373 chrY HAVANA gene 7687739 7689548 868.0 - 0 ENSG00000236435.1 unprocessed_pseudogene TSPY12P 1 OTTHUMG00000041014.1 pseudo_consens +64374 chrY HAVANA gene 7690511 7692678 662.0 + 0 ENSG00000236690.2 unprocessed_pseudogene AC007274.2 2 OTTHUMG00000041016.1 +64375 chrY HAVANA gene 7699357 7701247 192.0 - 0 ENSG00000225520.1 lincRNA TTTY16 2 OTTHUMG00000041019.1 +64376 chrY HAVANA gene 7712985 7809261 1842.0 - 0 ENSG00000234795.9 transcribed_unprocessed_pseudogene RFTN1P1 2 OTTHUMG00000041013.3 +64377 chrY HAVANA gene 7804924 7810683 979.0 + 0 ENSG00000237048.2 lincRNA TTTY12 2 OTTHUMG00000067560.2 +64378 chrY HAVANA gene 7845485 7846454 671.0 - 0 ENSG00000278854.1 processed_pseudogene AC007275.1 2 OTTHUMG00000188003.1 +64379 chrY HAVANA gene 7853686 7854876 1191.0 - 0 ENSG00000215603.4 processed_pseudogene ZNF92P1Y 2 OTTHUMG00000041017.2 +64380 chrY HAVANA gene 7905536 7907303 713.0 - 0 ENSG00000273863.1 processed_pseudogene AC010678.1 2 OTTHUMG00000188000.1 +64381 chrY HAVANA gene 7913422 7914090 669.0 - 0 ENSG00000244246.1 processed_pseudogene ZNF736P8Y 2 OTTHUMG00000041058.1 +64382 chrY HAVANA gene 7932997 7937640 265.0 - 0 ENSG00000229745.1 unprocessed_pseudogene BPY2DP 2 OTTHUMG00000041060.1 +64383 chrY HAVANA gene 7990987 7991806 820.0 - 0 ENSG00000241200.1 processed_pseudogene ZNF736P7Y 2 OTTHUMG00000041059.1 +64384 chrY HAVANA gene 8068896 8070723 1345.0 - 0 ENSG00000239893.1 processed_pseudogene ZNF736P9Y 2 OTTHUMG00000041061.1 +64385 chrY HAVANA gene 8127130 8144203 1059.0 + 0 ENSG00000227204.1 unprocessed_pseudogene RBMY2JP 2 OTTHUMG00000041057.1 +64386 chrY HAVANA gene 8264449 8277188 992.0 - 0 ENSG00000225809.1 unprocessed_pseudogene RBMY2KP 2 OTTHUMG00000041263.1 +64387 chrY HAVANA gene 8280198 8282209 443.0 + 0 ENSG00000215601.3 unprocessed_pseudogene TSPY24P 2 OTTHUMG00000041266.1 +64388 chrY HAVANA gene 8350931 8352143 1213.0 + 0 ENSG00000224634.1 processed_pseudogene ZNF736P6Y 2 OTTHUMG00000041269.1 +64389 chrY HAVANA gene 8363536 8363959 424.0 - 0 ENSG00000223955.1 processed_pseudogene MTND6P1 2 OTTHUMG00000041270.1 +64390 chrY HAVANA gene 8364032 8365150 1119.0 + 0 ENSG00000234179.1 processed_pseudogene MTCYBP1 2 OTTHUMG00000041271.1 +64391 chrY HAVANA gene 8371663 8372030 368.0 + 0 ENSG00000226529.1 processed_pseudogene MTND1P1 2 OTTHUMG00000041272.1 +64392 chrY HAVANA gene 8372241 8372710 470.0 + 0 ENSG00000234850.1 processed_pseudogene MTND2P3 2 OTTHUMG00000041273.1 +64393 chrY HAVANA gene 8413037 8414054 673.0 - 0 ENSG00000227830.1 processed_pseudogene TRIM60P3Y 2 OTTHUMG00000041274.1 +64394 chrY HAVANA gene 8418791 8419900 1110.0 - 0 ENSG00000216824.2 processed_pseudogene ZNF736P10Y 2 OTTHUMG00000041275.1 +64395 chrY HAVANA gene 8517364 8517748 385.0 - 0 ENSG00000275866.1 processed_pseudogene AC016991.1 2 OTTHUMG00000188027.1 +64396 chrY HAVANA gene 8638294 8644842 473.0 + 0 ENSG00000232348.2 lincRNA LINC00279 2 OTTHUMG00000041258.3 +64397 chrY HAVANA gene 8683370 8683878 221.0 - 0 ENSG00000233699.1 lincRNA TTTY18 2 OTTHUMG00000041267.1 +64398 chrY HAVANA gene 8704472 8705283 269.0 + 0 ENSG00000232419.1 lincRNA TTTY19 2 OTTHUMG00000041268.1 +64399 chrY HAVANA gene 8783310 8817382 837.0 - 0 ENSG00000180910.7 lincRNA TTTY11 2 OTTHUMG00000041259.2 +64400 chrY HAVANA gene 8901203 8903276 625.0 - 0 ENSG00000228207.1 unprocessed_pseudogene AC007967.2 2 OTTHUMG00000041261.1 +64401 chrY HAVANA gene 8906224 8916073 1159.0 + 0 ENSG00000173357.12 transcribed_unprocessed_pseudogene AC007967.1 2 OTTHUMG00000041262.2 +64402 chrY HAVANA gene 8931069 8931454 386.0 - 0 ENSG00000273731.1 processed_pseudogene AC007967.4 2 OTTHUMG00000188053.1 +64403 chrY HAVANA gene 8971751 8974095 558.0 - 0 ENSG00000230025.1 unprocessed_pseudogene AC007967.3 2 OTTHUMG00000041264.1 +64404 chrY HAVANA gene 9030594 9039988 783.0 + 0 ENSG00000231988.1 unprocessed_pseudogene OFD1P3Y 2 OTTHUMG00000041410.1 +64405 chrY HAVANA gene 9166085 9167702 1618.0 - 0 ENSG00000232235.1 processed_pseudogene CDY3P 1 OTTHUMG00000041411.1 pseudo_consens +64406 chrY HAVANA gene 9183694 9185803 294.0 + 0 ENSG00000224408.1 unprocessed_pseudogene USP9YP22 2 OTTHUMG00000041407.1 +64407 chrY HAVANA gene 9189629 9204611 1745.0 - 0 ENSG00000238154.1 unprocessed_pseudogene USP9YP4 2 OTTHUMG00000041408.1 +64408 chrY HAVANA gene 9230915 9231247 333.0 + 0 ENSG00000232924.1 processed_pseudogene ELOCP4 1 OTTHUMG00000041409.1 pseudo_consens +64409 chrY HAVANA gene 9311130 9322869 1404.0 - 0 ENSG00000197038.6 unprocessed_pseudogene RBMY1A3P 2 OTTHUMG00000041536.1 +64410 chrY HAVANA gene 9325799 9326047 249.0 + 0 ENSG00000275310.1 processed_pseudogene AC006158.1 2 OTTHUMG00000188054.1 +64411 chrY HAVANA gene 9329880 9334832 259.0 - 0 ENSG00000232808.1 antisense TTTY20 2 OTTHUMG00000041537.1 +64412 chrY HAVANA gene 9337464 9340284 1979.0 + 0 ENSG00000233803.9 protein_coding TSPY4 2 OTTHUMG00000041529.2 +64413 chrY HAVANA gene 9347511 9356814 2863.0 - 0 ENSG00000225560.6 transcribed_processed_pseudogene FAM197Y8 2 OTTHUMG00000187512.1 +64414 chrY HAVANA gene 9357797 9360599 1941.0 + 0 ENSG00000229549.9 protein_coding TSPY8 2 OTTHUMG00000041531.1 +64415 chrY HAVANA gene 9367803 9377092 3039.0 - 0 ENSG00000228383.6 transcribed_unprocessed_pseudogene FAM197Y7 2 OTTHUMG00000041532.2 +64416 chrY HAVANA gene 9378122 9380871 1114.0 + 0 ENSG00000188656.8 unprocessed_pseudogene TSPY7P 2 OTTHUMG00000041533.1 +64417 chrY HAVANA gene 9388122 9397438 3054.0 - 0 ENSG00000237802.6 transcribed_unprocessed_pseudogene FAM197Y6 2 OTTHUMG00000041534.2 +64418 chrY HAVANA gene 9398421 9401223 1941.0 + 0 ENSG00000228927.10 protein_coding TSPY3 2 OTTHUMG00000041535.1 +64419 chrY HAVANA gene 9458613 9465974 1119.0 - 0 ENSG00000225516.6 lincRNA FAM197Y5 2 OTTHUMG00000187485.9 +64420 chrY HAVANA gene 9466955 9469748 1171.0 + 0 ENSG00000258992.6 protein_coding TSPY1 2 OTTHUMG00000171452.1 +64421 chrY HAVANA gene 9479053 9486239 827.0 - 0 ENSG00000274196.4 transcribed_unprocessed_pseudogene FAM197Y4 2 OTTHUMG00000187486.2 +64422 chrY HAVANA gene 9487313 9489893 945.0 + 0 ENSG00000238074.5 unprocessed_pseudogene TSPY9P 2 OTTHUMG00000187491.2 +64423 chrY HAVANA gene 9497287 9506566 2990.0 - 0 ENSG00000230066.5 transcribed_unprocessed_pseudogene FAM197Y3 2 OTTHUMG00000041521.2 +64424 chrY HAVANA gene 9507596 9510175 926.0 + 0 ENSG00000270073.1 unprocessed_pseudogene TSPY6P 2 OTTHUMG00000041522.1 +64425 chrY HAVANA gene 9517599 9526897 3062.0 - 0 ENSG00000234803.7 transcribed_unprocessed_pseudogene FAM197Y2 2 OTTHUMG00000041523.2 +64426 chrY HAVANA gene 9527880 9530682 1941.0 + 0 ENSG00000236424.7 protein_coding TSPY10 2 OTTHUMG00000041524.1 +64427 chrY HAVANA gene 9544917 9547147 764.0 - 0 ENSG00000224336.2 unprocessed_pseudogene FAM197Y1 2 OTTHUMG00000187490.1 +64428 chrY HAVANA gene 9548108 9550681 923.0 + 0 ENSG00000236786.1 unprocessed_pseudogene TSPY15P 2 OTTHUMG00000041526.1 +64429 chrY HAVANA gene 9610571 9621276 1145.0 - 0 ENSG00000231436.1 unprocessed_pseudogene RBMY3AP 2 OTTHUMG00000041525.1 +64430 chrY HAVANA gene 9624183 9626352 745.0 + 0 ENSG00000234110.1 unprocessed_pseudogene TSPY25P 2 OTTHUMG00000041527.1 +64431 chrY HAVANA gene 9640249 9640716 468.0 - 0 ENSG00000226223.1 unprocessed_pseudogene TSPY16P 1 OTTHUMG00000041593.1 pseudo_consens +64432 chrY HAVANA gene 9665229 9669010 261.0 + 0 ENSG00000232617.1 unprocessed_pseudogene AC017019.1 2 OTTHUMG00000041590.1 +64433 chrY HAVANA gene 9691100 9693957 708.0 + 0 ENSG00000183385.9 lincRNA TTTY8 2 OTTHUMG00000046237.1 +64434 chrY HAVANA gene 9706824 9715262 1466.0 - 0 ENSG00000147761.8 lincRNA TTTY7B 2 OTTHUMG00000046238.1 +64435 chrY HAVANA gene 9717653 9721296 307.0 - 0 ENSG00000228890.1 lincRNA TTTY21 2 OTTHUMG00000046232.1 +64436 chrY HAVANA gene 9740584 9758476 3168.0 + 0 ENSG00000212855.5 lincRNA TTTY2 2 OTTHUMG00000046230.1 +64437 chrY HAVANA gene 9753156 9774289 910.0 - 0 ENSG00000129845.5 lincRNA TTTY1 2 OTTHUMG00000046226.1 +64438 chrY HAVANA gene 9801153 9813245 427.0 + 0 ENSG00000224075.1 lincRNA TTTY22 2 OTTHUMG00000041601.1 +64439 chrY HAVANA gene 9813315 9817513 448.0 + 0 ENSG00000228379.1 lincRNA AC010891.1 2 OTTHUMG00000041597.1 +64440 chrY HAVANA gene 9831418 9846696 1028.0 - 0 ENSG00000229208.1 unprocessed_pseudogene RBMY2NP 2 OTTHUMG00000041598.1 +64441 chrY HAVANA gene 9868462 9868702 241.0 - 0 ENSG00000274445.1 processed_pseudogene AC006986.1 1 OTTHUMG00000188055.1 pseudo_consens +64442 chrY HAVANA gene 9869664 9870781 509.0 + 0 ENSG00000231874.3 unprocessed_pseudogene TSPY18P 2 OTTHUMG00000041594.1 +64443 chrY HAVANA gene 9905595 9908139 914.0 - 0 ENSG00000187657.6 unprocessed_pseudogene TSPY13P 1 OTTHUMG00000041595.1 pseudo_consens +64444 chrY HAVANA gene 9910798 9911962 512.0 + 0 ENSG00000239225.1 lincRNA TTTY23 2 OTTHUMG00000046234.1 +64445 chrY HAVANA gene 9951553 9959423 810.0 + 0 ENSG00000234950.1 unprocessed_pseudogene RBMY2OP 1 OTTHUMG00000041596.1 pseudo_consens +64446 chrY HAVANA gene 10022489 10034187 1147.0 - 0 ENSG00000236718.3 unprocessed_pseudogene RBMY2QP 2 OTTHUMG00000041600.1 +64447 chrY HAVANA gene 10036195 10038375 630.0 + 0 ENSG00000243643.1 unprocessed_pseudogene TSPY20P 2 OTTHUMG00000041614.1 +64448 chrY HAVANA gene 10066554 10069151 973.0 - 0 ENSG00000225685.1 transcribed_unprocessed_pseudogene TSPY5P 2 OTTHUMG00000041615.2 +64449 chrY HAVANA gene 10070131 10070409 279.0 + 0 ENSG00000278478.1 processed_pseudogene AC006987.4 2 OTTHUMG00000188057.1 +64450 chrY HAVANA gene 10088026 10089586 527.0 + 0 ENSG00000235193.1 unprocessed_pseudogene AC006987.2 2 OTTHUMG00000041616.1 +64451 chrY ENSEMBL gene 10090410 10090528 119.0 - 0 ENSG00000251766.1 rRNA_pseudogene RNA5SP518 3 +64452 chrY HAVANA gene 10090802 10091207 406.0 + 0 ENSG00000235691.1 unprocessed_pseudogene AC006987.3 2 OTTHUMG00000041617.1 +64453 chrY ENSEMBL gene 10092875 10092993 119.0 - 0 ENSG00000252289.1 rRNA_pseudogene RNA5SP519 3 +64454 chrY HAVANA gene 10169788 10170314 527.0 - 0 ENSG00000226975.1 unprocessed_pseudogene AC006987.1 2 OTTHUMG00000041618.1 +64455 chrY HAVANA gene 10171590 10172725 1136.0 - 0 ENSG00000231411.1 unprocessed_pseudogene DUX4L31 2 OTTHUMG00000041619.1 +64456 chrY HAVANA gene 10173853 10174207 355.0 + 0 ENSG00000226061.1 unprocessed_pseudogene PCMTD1P1 2 OTTHUMG00000041613.1 +64457 chrY HAVANA gene 10190377 10192298 1922.0 - 0 ENSG00000237447.1 processed_pseudogene CDC27P2 1 OTTHUMG00000036270.1 pseudo_consens +64458 chrY HAVANA gene 10197256 10199103 1848.0 - 0 ENSG00000225840.2 processed_pseudogene AC010970.1 2 OTTHUMG00000036271.2 +64459 chrY ENSEMBL gene 10200155 10200306 152.0 + 0 ENSG00000251705.1 rRNA_pseudogene RNA5-8SP6 3 +64460 chrY HAVANA gene 11042722 11042943 222.0 - 0 ENSG00000273858.1 processed_pseudogene AC140113.4 2 OTTHUMG00000188059.1 +64461 chrY HAVANA gene 11085476 11086061 586.0 - 0 ENSG00000273693.1 processed_pseudogene C2orf27AP1 2 OTTHUMG00000188061.1 +64462 chrY HAVANA gene 11107065 11107263 199.0 - 0 ENSG00000271365.1 processed_pseudogene AC140113.3 2 OTTHUMG00000185057.1 +64463 chrY HAVANA gene 11107389 11107596 208.0 - 0 ENSG00000271309.1 processed_pseudogene AC140113.2 2 OTTHUMG00000185058.1 +64464 chrY HAVANA gene 11107719 11107887 169.0 - 0 ENSG00000270570.1 processed_pseudogene AC140113.1 2 OTTHUMG00000185059.1 +64465 chrY HAVANA gene 11144250 11144492 243.0 + 0 ENSG00000274231.1 processed_pseudogene AC134878.1 2 OTTHUMG00000188062.1 +64466 chrY HAVANA gene 11153858 11159013 1265.0 - 0 ENSG00000278212.1 unprocessed_pseudogene AC134878.2 2 OTTHUMG00000188065.1 +64467 chrY HAVANA gene 11173618 11173821 204.0 + 0 ENSG00000274502.1 processed_pseudogene ANKRD20A6P 2 OTTHUMG00000188066.1 +64468 chrY HAVANA gene 11178306 11178816 511.0 + 0 ENSG00000274162.1 processed_pseudogene SNX18P1Y 2 OTTHUMG00000188067.1 +64469 chrY HAVANA gene 11306918 11308181 1264.0 + 0 ENSG00000258567.1 unprocessed_pseudogene DUX4L16 1 OTTHUMG00000170710.1 pseudo_consens +64470 chrY HAVANA gene 11314921 11316187 1267.0 + 0 ENSG00000259154.1 unprocessed_pseudogene DUX4L17 1 OTTHUMG00000170711.1 pseudo_consens +64471 chrY HAVANA gene 11321557 11322823 1267.0 + 0 ENSG00000259029.1 unprocessed_pseudogene DUX4L18 1 OTTHUMG00000170712.1 pseudo_consens +64472 chrY HAVANA gene 11332329 11333595 1267.0 + 0 ENSG00000258991.1 unprocessed_pseudogene DUX4L19 1 OTTHUMG00000170713.1 pseudo_consens +64473 chrY HAVANA gene 11335627 11337693 1676.0 + 0 ENSG00000270455.1 processed_pseudogene PABPC1P5 1 OTTHUMG00000185074.1 pseudo_consens +64474 chrY HAVANA gene 11340579 11385687 1337.0 - 0 ENSG00000183704.7 unprocessed_pseudogene SLC9B1P1 2 OTTHUMG00000187487.1 +64475 chrY HAVANA gene 11395699 11397076 1247.0 + 0 ENSG00000270242.1 processed_pseudogene ACTR3BP1 1 OTTHUMG00000185098.1 pseudo_consens +64476 chrY HAVANA gene 11412548 11418716 254.0 + 0 ENSG00000275828.1 unprocessed_pseudogene AC134879.3 2 OTTHUMG00000188082.1 +64477 chrY HAVANA gene 11445418 11445564 147.0 - 0 ENSG00000225433.3 unprocessed_pseudogene MTND1P12 2 OTTHUMG00000188087.1 +64478 chrY HAVANA gene 11445708 11446101 394.0 - 0 ENSG00000224567.2 processed_pseudogene AC134879.1 2 OTTHUMG00000188088.1 +64479 chrY HAVANA gene 11473727 11474237 389.0 - 0 ENSG00000271375.1 processed_pseudogene AC134879.2 1 OTTHUMG00000185099.1 pseudo_consens +64480 chrY HAVANA gene 11781052 11782527 1476.0 - 0 ENSG00000234385.1 processed_pseudogene RCC2P1 1 OTTHUMG00000036287.2 pseudo_consens +64481 chrY HAVANA gene 11922536 11923769 1234.0 - 0 ENSG00000215583.3 processed_pseudogene ASS1P6 1 OTTHUMG00000036286.1 pseudo_consens +64482 chrY HAVANA gene 11957208 11987386 8000.0 + 0 ENSG00000235649.2 unprocessed_pseudogene MXRA5Y 2 OTTHUMG00000036377.2 +64483 chrY HAVANA gene 12244752 12245457 371.0 + 0 ENSG00000236477.1 processed_pseudogene RPS24P1 1 OTTHUMG00000036383.1 pseudo_consens +64484 chrY HAVANA gene 12252321 12258033 477.0 - 0 ENSG00000232226.2 unprocessed_pseudogene ARSFP1 2 OTTHUMG00000036376.1 +64485 chrY ENSEMBL gene 12273473 12273764 292.0 + 0 ENSG00000243980.3 misc_RNA RN7SL702P 3 +64486 chrY HAVANA gene 12321623 12322835 1213.0 + 0 ENSG00000232730.1 processed_pseudogene FAM8A4P 1 OTTHUMG00000036378.1 pseudo_consens +64487 chrY HAVANA gene 12339813 12347495 782.0 + 0 ENSG00000224060.3 transcribed_unprocessed_pseudogene ARSEP1 2 OTTHUMG00000036379.2 +64488 chrY HAVANA gene 12354096 12387328 1215.0 + 0 ENSG00000225117.1 unprocessed_pseudogene ARSDP1 2 OTTHUMG00000036380.1 +64489 chrY HAVANA gene 12354416 12420456 2159.0 - 0 ENSG00000206159.10 transcribed_unprocessed_pseudogene GYG2P1 2 OTTHUMG00000036382.4 +64490 chrY HAVANA gene 12440046 12507369 446.0 - 0 ENSG00000227447.1 unprocessed_pseudogene XGY1 2 OTTHUMG00000036465.1 +64491 chrY HAVANA gene 12537773 12544883 2384.0 + 0 ENSG00000226863.1 unprocessed_pseudogene SHROOM2P1 2 OTTHUMG00000036466.1 +64492 chrY HAVANA gene 12618983 12634402 648.0 - 0 ENSG00000233774.1 unprocessed_pseudogene MED14P1 2 OTTHUMG00000036467.1 +64493 chrY HAVANA gene 12662334 12692233 5284.0 + 0 ENSG00000233864.7 lincRNA TTTY15 2 OTTHUMG00000036468.1 +64494 chrY HAVANA gene 12801973 12803830 1513.0 - 0 ENSG00000228411.1 processed_pseudogene CDY4P 1 OTTHUMG00000036471.1 pseudo_consens +64495 chrY HAVANA gene 12701231 12860839 11237.0 + 0 ENSG00000114374.12 protein_coding USP9Y 2 OTTHUMG00000036469.2 +64496 chrY HAVANA gene 12904108 12920478 5738.0 + 0 ENSG00000067048.16 protein_coding DDX3Y 2 OTTHUMG00000036324.2 +64497 chrY HAVANA gene 12930165 12948182 582.0 - 0 ENSG00000234059.1 unprocessed_pseudogene CASKP1 1 OTTHUMG00000036325.1 pseudo_consens +64498 chrY HAVANA gene 13083790 13095805 1786.0 + 0 ENSG00000224035.1 processed_pseudogene SFPQP1 1 OTTHUMG00000036320.1 pseudo_consens +64499 chrY HAVANA gene 13153931 13162214 1831.0 - 0 ENSG00000235462.1 transcribed_unprocessed_pseudogene TAB3P1 1 OTTHUMG00000036321.2 +64500 chrY HAVANA gene 13230884 13231439 556.0 + 0 ENSG00000223915.1 processed_pseudogene DPPA2P1 1 OTTHUMG00000036323.1 pseudo_consens +64501 chrY HAVANA gene 13286638 13287378 741.0 + 0 ENSG00000215414.4 processed_pseudogene PSMA6P1 1 OTTHUMG00000036322.1 pseudo_consens +64502 chrY HAVANA gene 13248379 13480673 9191.0 - 0 ENSG00000183878.15 protein_coding UTY 2 OTTHUMG00000036319.3 +64503 chrY HAVANA gene 13703567 13706024 1669.0 + 0 ENSG00000154620.5 protein_coding TMSB4Y 2 OTTHUMG00000036366.1 +64504 chrY HAVANA gene 13751656 13915824 2369.0 + 0 ENSG00000241859.6 transcribed_unprocessed_pseudogene ANOS2P 2 OTTHUMG00000036365.3 +64505 chrY HAVANA gene 13985772 13986513 550.0 - 0 ENSG00000129864.6 protein_coding VCY 2 OTTHUMG00000036401.1 +64506 chrY HAVANA gene 14056217 14056958 550.0 + 0 ENSG00000129862.6 protein_coding VCY1B 2 OTTHUMG00000036402.1 +64507 chrY HAVANA gene 14081075 14086600 305.0 + 0 ENSG00000235451.1 unprocessed_pseudogene PNPLA4P1 2 OTTHUMG00000036403.1 +64508 chrY HAVANA gene 14276212 14277489 540.0 - 0 ENSG00000223517.1 lincRNA AC010723.1 2 OTTHUMG00000036405.1 +64509 chrY HAVANA gene 14639096 14640358 1263.0 + 0 ENSG00000226555.1 processed_pseudogene AGKP1 1 OTTHUMG00000036620.1 pseudo_consens,overlapping_locus +64510 chrY HAVANA gene 14793642 14804033 532.0 - 0 ENSG00000228787.1 antisense NLGN4Y-AS1 2 OTTHUMG00000058879.1 +64511 chrY HAVANA gene 14522573 14845650 8589.0 + 0 ENSG00000165246.14 protein_coding NLGN4Y 2 OTTHUMG00000036618.4 overlapping_locus +64512 chrY HAVANA gene 14907898 14908068 171.0 + 0 ENSG00000236131.1 processed_pseudogene MED13P1 2 OTTHUMG00000036619.1 +64513 chrY HAVANA gene 14941547 14941750 204.0 - 0 ENSG00000227949.1 processed_pseudogene CYCSP46 1 OTTHUMG00000036621.1 pseudo_consens +64514 chrY HAVANA gene 14941746 14942715 131.0 + 0 ENSG00000224518.2 processed_pseudogene AC006989.1 2 OTTHUMG00000036617.2 +64515 chrY HAVANA gene 15348662 15456074 495.0 - 0 ENSG00000234620.1 unprocessed_pseudogene PUDPP1 1 OTTHUMG00000036408.1 pseudo_consens +64516 chrY HAVANA gene 15547216 15593331 1151.0 + 0 ENSG00000227166.1 unprocessed_pseudogene STSP1 2 OTTHUMG00000036409.1 +64517 chrY ENSEMBL gene 16138248 16138379 132.0 - 0 ENSG00000252689.1 snoRNA RF00401 3 +64518 chrY ENSEMBL gene 16248935 16249041 107.0 + 0 ENSG00000252173.1 snRNA RNU6-109P 3 +64519 chrY ENSEMBL gene 16336283 16336389 107.0 - 0 ENSG00000252323.1 snRNA RNU6-184P 3 +64520 chrY HAVANA gene 17192826 17193652 827.0 + 0 ENSG00000228518.1 processed_pseudogene SURF6P1 1 OTTHUMG00000036417.1 pseudo_consens +64521 chrY HAVANA gene 17464879 17465214 336.0 - 0 ENSG00000271595.1 processed_pseudogene ELOCP35 1 OTTHUMG00000185085.1 pseudo_consens +64522 chrY HAVANA gene 17500958 17515018 906.0 + 0 ENSG00000224989.2 lincRNA FAM41AY1 2 OTTHUMG00000041970.2 +64523 chrY HAVANA gene 17514502 17516715 890.0 + 0 ENSG00000283076.1 transcribed_unprocessed_pseudogene AC015978.1 2 OTTHUMG00000191487.1 +64524 chrY HAVANA gene 17516836 17519038 1306.0 - 0 ENSG00000228578.1 unprocessed_pseudogene TUBB1P2 1 OTTHUMG00000036414.1 pseudo_consens +64525 chrY ENSEMBL gene 17557864 17557976 113.0 + 0 ENSG00000252315.1 rRNA_pseudogene RNA5SP520 3 +64526 chrY ENSEMBL gene 17559774 17559889 116.0 + 0 ENSG00000252012.1 rRNA_pseudogene RNA5SP521 3 +64527 chrY ENSEMBL gene 17568962 17569051 90.0 - 0 ENSG00000273966.1 misc_RNA RF01518 3 +64528 chrY HAVANA gene 17552800 17579754 2032.0 - 0 ENSG00000230663.1 lincRNA FAM224B 2 OTTHUMG00000036416.1 ncRNA_host +64529 chrY HAVANA gene 17621259 17625832 1190.0 - 0 ENSG00000238191.3 unprocessed_pseudogene CLUHP1 2 OTTHUMG00000041625.1 +64530 chrY HAVANA gene 17628513 17629402 515.0 + 0 ENSG00000226353.1 processed_pseudogene TAF9P1 1 OTTHUMG00000041658.1 pseudo_consens +64531 chrY HAVANA gene 17705968 17708185 398.0 - 0 ENSG00000275578.1 unprocessed_pseudogene AC007742.2 2 OTTHUMG00000188092.1 +64532 chrY HAVANA gene 17721598 17723177 1580.0 + 0 ENSG00000226449.1 unprocessed_pseudogene CDY5P 1 OTTHUMG00000041659.1 pseudo_consens +64533 chrY HAVANA gene 17726752 17727080 329.0 + 0 ENSG00000225896.1 processed_pseudogene AC007742.1 2 OTTHUMG00000041660.1 +64534 chrY HAVANA gene 17729528 17744596 445.0 - 0 ENSG00000224166.1 unprocessed_pseudogene PRYP1 2 OTTHUMG00000041661.1 +64535 chrY HAVANA gene 17757001 17758125 1125.0 - 0 ENSG00000229129.1 processed_pseudogene ACTG1P2 1 OTTHUMG00000041662.1 pseudo_consens +64536 chrY HAVANA gene 17768980 17777400 1916.0 - 0 ENSG00000250868.4 transcribed_unprocessed_pseudogene XKRY 2 OTTHUMG00000041664.2 +64537 chrY HAVANA gene 17782210 17784815 407.0 + 0 ENSG00000223555.1 unprocessed_pseudogene USP9YP23 2 OTTHUMG00000059528.1 +64538 chrY ENSEMBL gene 17789003 17789162 160.0 - 0 ENSG00000252513.1 snRNA RNU1-128P 3 +64539 chrY HAVANA gene 17788315 17789484 438.0 - 0 ENSG00000235521.1 unprocessed_pseudogene USP9YP27 2 OTTHUMG00000059529.1 +64540 chrY HAVANA gene 17797983 17800696 321.0 - 0 ENSG00000224964.1 unprocessed_pseudogene TRAPPC2P3 2 OTTHUMG00000041665.1 +64541 chrY HAVANA gene 17809807 17825329 1225.0 + 0 ENSG00000226011.1 unprocessed_pseudogene OFD1P1Y 2 OTTHUMG00000041650.1 +64542 chrY HAVANA gene 17837201 17837528 328.0 - 0 ENSG00000225740.1 processed_pseudogene ELOCP6 1 OTTHUMG00000041651.1 pseudo_consens +64543 chrY HAVANA gene 17877410 17880220 2409.0 - 0 ENSG00000129873.7 protein_coding CDY2B 2 OTTHUMG00000041652.3 retrogene +64544 chrY HAVANA gene 17882099 17883708 1266.0 - 0 ENSG00000229138.1 unprocessed_pseudogene CDY6P 1 OTTHUMG00000041653.1 pseudo_consens +64545 chrY HAVANA gene 17908755 17910806 430.0 + 0 ENSG00000224485.1 unprocessed_pseudogene USP9YP7 2 OTTHUMG00000059524.1 +64546 chrY HAVANA gene 17912699 17921630 854.0 - 0 ENSG00000226116.1 unprocessed_pseudogene USP9YP6 2 OTTHUMG00000041654.1 +64547 chrY HAVANA gene 17951589 17953500 1604.0 + 0 ENSG00000237558.1 unprocessed_pseudogene CDY7P 1 OTTHUMG00000041655.1 pseudo_consens +64548 chrY HAVANA gene 17984349 17993260 808.0 + 0 ENSG00000233378.1 unprocessed_pseudogene USP9YP34 2 OTTHUMG00000041656.1 +64549 chrY HAVANA gene 17995201 17997252 430.0 - 0 ENSG00000237616.1 unprocessed_pseudogene USP9YP32 2 OTTHUMG00000059525.1 +64550 chrY HAVANA gene 18022299 18023908 1279.0 + 0 ENSG00000224033.1 unprocessed_pseudogene CDY8P 1 OTTHUMG00000041958.1 pseudo_consens +64551 chrY HAVANA gene 18025787 18028597 2402.0 + 0 ENSG00000182415.9 protein_coding CDY2A 2 OTTHUMG00000041657.2 retrogene +64552 chrY HAVANA gene 18068483 18068810 328.0 + 0 ENSG00000230412.1 processed_pseudogene ELOCP12 1 OTTHUMG00000041972.1 pseudo_consens +64553 chrY HAVANA gene 18080681 18096202 1149.0 - 0 ENSG00000226611.2 unprocessed_pseudogene OFD1P2Y 2 OTTHUMG00000041948.1 +64554 chrY HAVANA gene 18105314 18108102 396.0 + 0 ENSG00000225895.1 unprocessed_pseudogene TRAPPC2P8 2 OTTHUMG00000041951.1 +64555 chrY ENSEMBL gene 18116848 18117007 160.0 + 0 ENSG00000252166.1 snRNA RNU1-95P 3 +64556 chrY HAVANA gene 18116527 18117695 422.0 + 0 ENSG00000233120.1 unprocessed_pseudogene USP9YP15 2 OTTHUMG00000059527.1 +64557 chrY HAVANA gene 18121195 18123799 407.0 - 0 ENSG00000232744.1 unprocessed_pseudogene USP9YP16 2 OTTHUMG00000059526.1 +64558 chrY HAVANA gene 18128610 18137029 1916.0 + 0 ENSG00000244646.4 transcribed_unprocessed_pseudogene XKRY2 2 OTTHUMG00000041953.2 +64559 chrY HAVANA gene 18147884 18149008 1125.0 + 0 ENSG00000229465.1 processed_pseudogene ACTG1P11 1 OTTHUMG00000041957.1 pseudo_consens +64560 chrY HAVANA gene 18161366 18176484 492.0 + 0 ENSG00000231311.1 unprocessed_pseudogene PRYP2 2 OTTHUMG00000041960.1 +64561 chrY HAVANA gene 18178932 18179260 329.0 - 0 ENSG00000236599.1 processed_pseudogene ELOCP26 2 OTTHUMG00000041962.1 +64562 chrY HAVANA gene 18182835 18184414 1580.0 - 0 ENSG00000232899.1 unprocessed_pseudogene CDY9P 1 OTTHUMG00000041963.1 pseudo_consens +64563 chrY HAVANA gene 18276607 18277495 515.0 - 0 ENSG00000229302.1 processed_pseudogene TAF9P2 1 OTTHUMG00000041966.1 pseudo_consens +64564 chrY HAVANA gene 18280178 18284761 1303.0 + 0 ENSG00000228945.3 unprocessed_pseudogene CLUHP2 2 OTTHUMG00000041967.1 +64565 chrY ENSEMBL gene 18336960 18337049 90.0 + 0 ENSG00000278391.1 misc_RNA RF01518 3 +64566 chrY ENSEMBL gene 18346123 18346238 116.0 - 0 ENSG00000251953.1 rRNA_pseudogene RNA5SP522 3 +64567 chrY ENSEMBL gene 18348035 18348147 113.0 - 0 ENSG00000252667.1 rRNA_pseudogene RNA5SP523 3 +64568 chrY HAVANA gene 18326253 18353210 2031.0 + 0 ENSG00000233522.1 lincRNA FAM224A 2 OTTHUMG00000041969.1 ncRNA_host +64569 chrY HAVANA gene 18386974 18389151 1300.0 + 0 ENSG00000249726.1 unprocessed_pseudogene TUBB1P1 1 OTTHUMG00000041971.1 pseudo_consens +64570 chrY HAVANA gene 18390994 18405046 906.0 - 0 ENSG00000226362.2 lincRNA FAM41AY2 2 OTTHUMG00000041973.2 +64571 chrY HAVANA gene 18389297 18405046 1596.0 - 0 ENSG00000282909.2 transcribed_unprocessed_pseudogene AC007241.1 2 OTTHUMG00000191488.2 +64572 chrY HAVANA gene 18440797 18441125 329.0 + 0 ENSG00000225716.1 processed_pseudogene ELOCP13 1 OTTHUMG00000041974.1 pseudo_consens +64573 chrY HAVANA gene 18453150 18472137 1179.0 - 0 ENSG00000229406.1 unprocessed_pseudogene OFD1P4Y 2 OTTHUMG00000041975.1 +64574 chrY ENSEMBL gene 18486511 18486672 162.0 + 0 ENSG00000252209.1 snRNA RNU1-48P 3 +64575 chrY HAVANA gene 18481087 18487400 563.0 + 0 ENSG00000227494.2 unprocessed_pseudogene USP9YP14 2 OTTHUMG00000041981.1 +64576 chrY HAVANA gene 18490915 18494295 630.0 - 0 ENSG00000249634.1 unprocessed_pseudogene USP9YP5 2 OTTHUMG00000041983.1 +64577 chrY HAVANA gene 18508577 18509068 492.0 + 0 ENSG00000238067.1 unprocessed_pseudogene XKRYP1 2 OTTHUMG00000041984.1 overlapping_locus +64578 chrY HAVANA gene 18529358 18529623 266.0 + 0 ENSG00000233546.1 unprocessed_pseudogene PRYP5 2 OTTHUMG00000041977.1 overlapping_locus +64579 chrY HAVANA gene 18532326 18532656 331.0 - 0 ENSG00000230377.1 processed_pseudogene ELOCP7 1 OTTHUMG00000041978.1 pseudo_consens +64580 chrY HAVANA gene 18540980 18544128 1002.0 + 0 ENSG00000250951.1 unprocessed_pseudogene USP9YP1 2 OTTHUMG00000041979.1 overlapping_locus +64581 chrY HAVANA gene 18491740 18547698 1483.0 + 0 ENSG00000251510.1 lincRNA AC022486.1 2 OTTHUMG00000041976.1 overlapping_locus +64582 chrY HAVANA gene 18578417 18578560 144.0 + 0 ENSG00000230458.1 unprocessed_pseudogene GPM6BP1 2 OTTHUMG00000041985.1 overlapping_locus +64583 chrY HAVANA gene 18546671 18588963 2906.0 + 0 ENSG00000172468.13 protein_coding HSFY1 2 OTTHUMG00000041980.2 overlapping_locus +64584 chrY HAVANA gene 18581206 18590521 1643.0 - 0 ENSG00000131007.9 antisense TTTY9B 2 OTTHUMG00000041950.3 overlapping_locus +64585 chrY HAVANA gene 18582063 18629077 2590.0 - 0 ENSG00000240438.2 unprocessed_pseudogene OFD1P5Y 2 OTTHUMG00000041982.2 overlapping_locus +64586 chrY HAVANA gene 18649671 18650279 609.0 + 0 ENSG00000235479.1 unprocessed_pseudogene RAB9AP4 2 OTTHUMG00000041986.1 +64587 chrY HAVANA gene 18655520 18656190 231.0 - 0 ENSG00000249606.1 unprocessed_pseudogene TRAPPC2P7 2 OTTHUMG00000041987.1 +64588 chrY HAVANA gene 18674033 18739197 4088.0 + 0 ENSG00000242153.7 transcribed_unprocessed_pseudogene OFD1P6Y 2 OTTHUMG00000041945.2 +64589 chrY HAVANA gene 18741843 18741986 144.0 - 0 ENSG00000236429.1 unprocessed_pseudogene GPM6BP2 2 OTTHUMG00000041949.1 overlapping_locus +64590 chrY HAVANA gene 18776279 18779427 1000.0 - 0 ENSG00000249501.1 unprocessed_pseudogene USP9YP2 2 OTTHUMG00000041954.1 overlapping_locus +64591 chrY HAVANA gene 18787750 18788080 331.0 + 0 ENSG00000228193.1 processed_pseudogene ELOCP14 1 OTTHUMG00000041956.1 pseudo_consens +64592 chrY HAVANA gene 18790709 18791051 343.0 - 0 ENSG00000248573.1 transcribed_unprocessed_pseudogene PRYP6 2 OTTHUMG00000041959.1 overlapping_locus +64593 chrY HAVANA gene 18811338 18811829 492.0 - 0 ENSG00000230904.1 unprocessed_pseudogene XKRYP2 2 OTTHUMG00000041961.1 overlapping_locus +64594 chrY HAVANA gene 18731440 18828662 4137.0 - 0 ENSG00000169953.11 protein_coding HSFY2 2 OTTHUMG00000041947.2 overlapping_locus +64595 chrY HAVANA gene 18826107 18829487 628.0 + 0 ENSG00000238135.1 unprocessed_pseudogene USP9YP10 2 OTTHUMG00000041964.1 +64596 chrY ENSEMBL gene 18833729 18833890 162.0 - 0 ENSG00000251970.1 snRNA RNU1-41P 3 +64597 chrY HAVANA gene 18833002 18839313 589.0 - 0 ENSG00000224151.1 unprocessed_pseudogene USP9YP28 2 OTTHUMG00000041965.1 +64598 chrY HAVANA gene 18848264 18867280 1155.0 + 0 ENSG00000238088.1 unprocessed_pseudogene OFD1P7Y 2 OTTHUMG00000036507.1 +64599 chrY HAVANA gene 18872102 18872272 171.0 + 0 ENSG00000217179.1 processed_pseudogene MTCYBP2 2 OTTHUMG00000036510.1 +64600 chrY HAVANA gene 18985175 18986398 861.0 + 0 ENSG00000217896.2 processed_pseudogene ZNF839P1 2 OTTHUMG00000036499.2 +64601 chrY HAVANA gene 18992467 18992709 243.0 - 0 ENSG00000185275.6 processed_pseudogene CD24P4 2 OTTHUMG00000036500.3 overlapping_locus +64602 chrY ENSEMBL gene 19018983 19019087 105.0 - 0 ENSG00000252766.1 snRNA RNU6-255P 3 +64603 chrY HAVANA gene 18872501 19077416 3239.0 - 0 ENSG00000176728.7 lincRNA TTTY14 2 OTTHUMG00000036505.2 ncRNA_host,overlapping_locus +64604 chrY HAVANA gene 19253960 19260875 842.0 - 0 ENSG00000274282.1 processed_pseudogene AC010133.1 2 OTTHUMG00000188094.1 +64605 chrY HAVANA gene 19327569 19328573 1005.0 + 0 ENSG00000234529.2 processed_pseudogene GAPDHP19 1 OTTHUMG00000036502.2 pseudo_consens +64606 chrY HAVANA gene 19455431 19503153 7069.0 - 0 ENSG00000215580.10 transcribed_unprocessed_pseudogene BCORP1 2 OTTHUMG00000036498.1 +64607 chrY HAVANA gene 19598188 19598757 570.0 + 0 ENSG00000267793.1 transcribed_processed_pseudogene AC009977.1 1 OTTHUMG00000179847.1 pseudo_consens,overlapping_locus +64608 chrY HAVANA gene 19567313 19606274 11377.0 + 0 ENSG00000131002.11 transcribed_unprocessed_pseudogene TXLNGY 1 OTTHUMG00000036509.2 pseudo_consens,overlapping_locus +64609 chrY HAVANA gene 19691941 19694606 2666.0 - 0 ENSG00000260197.1 lincRNA AC010889.1 2 OTTHUMG00000175431.1 +64610 chrY HAVANA gene 19703865 19744939 9463.0 - 0 ENSG00000012817.15 protein_coding KDM5D 2 OTTHUMG00000036508.3 +64611 chrY HAVANA gene 19932130 19932500 371.0 - 0 ENSG00000274837.1 processed_pseudogene AC009233.1 2 OTTHUMG00000188097.1 +64612 chrY HAVANA gene 19986575 19987852 918.0 - 0 ENSG00000237997.1 processed_pseudogene RCC2P2 1 OTTHUMG00000036504.1 pseudo_consens +64613 chrY HAVANA gene 20001185 20012204 723.0 - 0 ENSG00000232522.1 unprocessed_pseudogene ZNF886P 2 OTTHUMG00000036506.1 +64614 chrY HAVANA gene 20390051 20396796 1098.0 + 0 ENSG00000228764.1 processed_pseudogene ZNF885P 2 OTTHUMG00000036665.1 +64615 chrY HAVANA gene 20465668 20519228 1726.0 - 0 ENSG00000229236.1 lincRNA TTTY10 2 OTTHUMG00000036431.2 +64616 chrY HAVANA gene 20570222 20570519 298.0 - 0 ENSG00000277438.1 processed_pseudogene KDM5DP1 2 OTTHUMG00000188101.1 +64617 chrY HAVANA gene 20575725 20593154 4074.0 + 0 ENSG00000198692.9 protein_coding EIF1AY 2 OTTHUMG00000036544.2 +64618 chrY HAVANA gene 20727254 20742900 1026.0 + 0 ENSG00000225624.1 unprocessed_pseudogene TBL1YP1 2 OTTHUMG00000036543.1 +64619 chrY HAVANA gene 20756164 20781032 792.0 + 0 ENSG00000280969.1 protein_coding RPS4Y2 2 OTTHUMG00000036540.2 +64620 chrY HAVANA gene 20808776 20811809 1181.0 - 0 ENSG00000224482.1 unprocessed_pseudogene HSFY4P 1 OTTHUMG00000036537.1 pseudo_consens +64621 chrY HAVANA gene 20843256 20843710 455.0 - 0 ENSG00000216844.1 processed_pseudogene AC009494.1 2 OTTHUMG00000036545.1 +64622 chrY HAVANA gene 20861337 20862337 1001.0 + 0 ENSG00000229551.2 processed_pseudogene GAPDHP17 1 OTTHUMG00000036538.2 pseudo_consens +64623 chrY HAVANA gene 20907344 20907562 219.0 - 0 ENSG00000226504.1 processed_pseudogene TMEM167AP1 1 OTTHUMG00000036541.1 pseudo_consens +64624 chrY HAVANA gene 21038289 21044724 983.0 - 0 ENSG00000254488.1 lincRNA AC007876.1 1 OTTHUMG00000165821.1 +64625 chrY HAVANA gene 21130870 21131181 312.0 + 0 ENSG00000237427.1 processed_pseudogene TOMM22P1 1 OTTHUMG00000036539.1 pseudo_consens +64626 chrY HAVANA gene 21221106 21222089 984.0 - 0 ENSG00000232634.1 processed_pseudogene NEFLP1 1 OTTHUMG00000036542.1 pseudo_consens +64627 chrY HAVANA gene 21311268 21318895 1052.0 + 0 ENSG00000226918.1 unprocessed_pseudogene AC010086.1 2 OTTHUMG00000042035.1 +64628 chrY HAVANA gene 21382954 21386360 878.0 - 0 ENSG00000183146.4 protein_coding PRORY 2 OTTHUMG00000042036.1 +64629 chrY HAVANA gene 21394991 21401585 940.0 - 0 ENSG00000223637.7 transcribed_unprocessed_pseudogene RBMY2EP 2 OTTHUMG00000042038.2 +64630 chrY HAVANA gene 21405770 21405995 226.0 + 0 ENSG00000236615.1 unprocessed_pseudogene AC010086.2 2 OTTHUMG00000042039.1 +64631 chrY HAVANA gene 21430697 21437245 947.0 - 0 ENSG00000237269.1 unprocessed_pseudogene RBMY2TP 1 OTTHUMG00000042040.1 pseudo_consens +64632 chrY HAVANA gene 21465384 21467163 520.0 - 0 ENSG00000235719.3 unprocessed_pseudogene FAM197Y10 2 OTTHUMG00000042041.1 +64633 chrY HAVANA gene 21468158 21470683 915.0 + 0 ENSG00000169849.8 unprocessed_pseudogene TSPY14P 1 OTTHUMG00000042042.1 pseudo_consens +64634 chrY HAVANA gene 21493519 21501968 1389.0 + 0 ENSG00000169811.8 unprocessed_pseudogene RBMY1HP 2 OTTHUMG00000042043.1 +64635 chrY HAVANA gene 21508299 21510470 717.0 - 0 ENSG00000242393.1 unprocessed_pseudogene AC010141.3 2 OTTHUMG00000042044.1 +64636 chrY HAVANA gene 21531839 21534011 721.0 - 0 ENSG00000228257.1 unprocessed_pseudogene AC010141.2 2 OTTHUMG00000043590.1 +64637 chrY HAVANA gene 21511338 21549094 2266.0 + 0 ENSG00000242875.6 protein_coding RBMY1B 2 OTTHUMG00000042045.3 +64638 chrY HAVANA gene 21511372 21549326 2252.0 + 0 ENSG00000234414.7 protein_coding RBMY1A1 2 OTTHUMG00000043592.3 +64639 chrY HAVANA gene 21555852 21558070 623.0 - 0 ENSG00000227989.1 unprocessed_pseudogene AC010141.1 2 OTTHUMG00000043595.1 +64640 chrY HAVANA gene 21583600 21594666 659.0 - 0 ENSG00000184991.2 lincRNA TTTY13 2 OTTHUMG00000043583.1 +64641 chrY HAVANA gene 21631683 21632015 333.0 - 0 ENSG00000271123.1 processed_pseudogene ELOCP5 1 OTTHUMG00000185064.1 pseudo_consens +64642 chrY HAVANA gene 21637475 21639041 1567.0 - 0 ENSG00000226042.1 unprocessed_pseudogene CDY10P 1 OTTHUMG00000043576.1 pseudo_consens +64643 chrY HAVANA gene 21661926 21674008 1766.0 + 0 ENSG00000237023.1 unprocessed_pseudogene USP9YP3 2 OTTHUMG00000043577.1 +64644 chrY HAVANA gene 21677246 21681118 500.0 - 0 ENSG00000229416.1 unprocessed_pseudogene USP9YP8 2 OTTHUMG00000043579.1 +64645 chrY HAVANA gene 21696570 21698220 1651.0 + 0 ENSG00000230029.1 unprocessed_pseudogene CDY11P 1 OTTHUMG00000043581.1 pseudo_consens +64646 chrY HAVANA gene 21817579 21818218 318.0 - 0 ENSG00000277519.1 unprocessed_pseudogene OFD1P16Y 2 OTTHUMG00000188103.1 +64647 chrY HAVANA gene 21871331 21873550 605.0 + 0 ENSG00000229725.1 unprocessed_pseudogene AC007322.2 2 OTTHUMG00000043597.1 +64648 chrY HAVANA gene 21880076 21894526 1921.0 - 0 ENSG00000244395.6 protein_coding RBMY1D 2 OTTHUMG00000043598.2 +64649 chrY HAVANA gene 21895394 21897559 723.0 + 0 ENSG00000251618.1 unprocessed_pseudogene AC007322.4 2 OTTHUMG00000043600.1 +64650 chrY HAVANA gene 21903618 21918067 1921.0 - 0 ENSG00000242389.8 protein_coding RBMY1E 2 OTTHUMG00000043602.2 +64651 chrY HAVANA gene 21918935 21921106 750.0 + 0 ENSG00000227444.1 unprocessed_pseudogene AC007322.1 2 OTTHUMG00000043604.1 +64652 chrY HAVANA gene 21927521 21937150 1157.0 - 0 ENSG00000226092.4 unprocessed_pseudogene RBMY2AP 2 OTTHUMG00000043606.1 +64653 chrY HAVANA gene 21940012 21941593 701.0 + 0 ENSG00000237968.1 unprocessed_pseudogene AC007322.3 2 OTTHUMG00000043607.1 +64654 chrY HAVANA gene 21972313 22005349 1433.0 + 0 ENSG00000231159.1 unprocessed_pseudogene OFD1P8Y 2 OTTHUMG00000043575.1 +64655 chrY HAVANA gene 22048554 22049347 309.0 - 0 ENSG00000232475.1 unprocessed_pseudogene HSFY5P 1 OTTHUMG00000043599.1 pseudo_consens +64656 chrY HAVANA gene 22049755 22058113 696.0 - 0 ENSG00000229553.1 unprocessed_pseudogene USP9YP17 2 OTTHUMG00000043601.1 +64657 chrY HAVANA gene 22064698 22065712 1015.0 + 0 ENSG00000228850.1 unprocessed_pseudogene CDY12P 1 OTTHUMG00000043603.1 pseudo_consens +64658 chrY HAVANA gene 22068820 22069151 332.0 + 0 ENSG00000232029.1 processed_pseudogene ELOCP15 1 OTTHUMG00000043605.2 pseudo_consens +64659 chrY HAVANA gene 22071756 22096007 1353.0 - 0 ENSG00000169807.10 protein_coding PRY2 2 OTTHUMG00000043586.2 +64660 chrY HAVANA gene 22144966 22146831 491.0 + 0 ENSG00000131548.7 antisense TTTY6B 2 OTTHUMG00000043580.1 +64661 chrY HAVANA gene 22100814 22147484 3181.0 - 0 ENSG00000236951.5 lincRNA AC007359.1 2 OTTHUMG00000043574.1 +64662 chrY HAVANA gene 22168542 22182982 1921.0 - 0 ENSG00000169800.13 protein_coding RBMY1F 2 OTTHUMG00000043593.1 +64663 chrY HAVANA gene 22183850 22186021 739.0 + 0 ENSG00000229159.1 unprocessed_pseudogene TSPY23P 2 OTTHUMG00000043596.1 +64664 chrY HAVANA gene 22198429 22203712 324.0 + 0 ENSG00000225615.1 unprocessed_pseudogene RBMY2UP 2 OTTHUMG00000043584.1 +64665 chrY HAVANA gene 22209331 22216580 476.0 + 0 ENSG00000229234.1 unprocessed_pseudogene RBMY1KP 2 OTTHUMG00000043585.1 +64666 chrY HAVANA gene 22296798 22298876 1562.0 - 0 ENSG00000215560.2 lincRNA TTTY5 2 OTTHUMG00000043578.1 +64667 chrY HAVANA gene 22305925 22307951 604.0 - 0 ENSG00000229940.1 unprocessed_pseudogene TSPY22P 2 OTTHUMG00000043587.1 +64668 chrY HAVANA gene 22308859 22321825 2914.0 + 0 ENSG00000243040.6 transcribed_unprocessed_pseudogene RBMY2FP 2 OTTHUMG00000043589.1 +64669 chrY HAVANA gene 22330452 22332500 1505.0 + 0 ENSG00000259247.1 unprocessed_pseudogene TTTY25P 2 OTTHUMG00000172609.1 +64670 chrY HAVANA gene 22400403 22402568 731.0 - 0 ENSG00000237902.1 unprocessed_pseudogene TSPY21P 2 OTTHUMG00000043591.1 +64671 chrY HAVANA gene 22403461 22417881 1895.0 + 0 ENSG00000226941.8 protein_coding RBMY1J 2 OTTHUMG00000043594.2 +64672 chrY HAVANA gene 22439593 22441458 491.0 - 0 ENSG00000131538.7 lincRNA TTTY6 2 OTTHUMG00000046220.1 +64673 chrY HAVANA gene 22438940 22485592 3181.0 + 0 ENSG00000235059.5 lincRNA AC008175.1 2 OTTHUMG00000043582.3 +64674 chrY HAVANA gene 22490397 22514637 1353.0 + 0 ENSG00000169789.10 protein_coding PRY 2 OTTHUMG00000043845.3 +64675 chrY HAVANA gene 22517242 22517573 332.0 - 0 ENSG00000234131.1 processed_pseudogene ELOCP8 1 OTTHUMG00000043847.1 pseudo_consens +64676 chrY HAVANA gene 22520681 22521695 1015.0 - 0 ENSG00000224873.1 unprocessed_pseudogene CDY13P 1 OTTHUMG00000043848.1 pseudo_consens +64677 chrY HAVANA gene 22528281 22536639 697.0 + 0 ENSG00000230814.1 unprocessed_pseudogene USP9YP24 2 OTTHUMG00000043849.1 +64678 chrY HAVANA gene 22537047 22537849 318.0 + 0 ENSG00000228571.1 unprocessed_pseudogene HSFY7P 1 OTTHUMG00000043851.1 pseudo_consens +64679 chrY HAVANA gene 22580989 22614081 1491.0 - 0 ENSG00000230476.1 unprocessed_pseudogene OFD1P9Y 2 OTTHUMG00000043852.1 +64680 chrY HAVANA gene 22646031 22646327 297.0 - 0 ENSG00000273589.1 unprocessed_pseudogene AC008175.2 2 OTTHUMG00000188100.1 +64681 chrY HAVANA gene 22649245 22658878 1156.0 + 0 ENSG00000224657.9 transcribed_unprocessed_pseudogene RBMY2BP 2 OTTHUMG00000043855.2 +64682 chrY HAVANA gene 22670616 22672859 700.0 - 0 ENSG00000224917.1 unprocessed_pseudogene AC016694.1 1 OTTHUMG00000043856.1 pseudo_consens +64683 chrY HAVANA gene 22762851 22769787 894.0 - 0 ENSG00000230727.1 unprocessed_pseudogene RBMY2WP 2 OTTHUMG00000043850.1 +64684 chrY HAVANA gene 22851584 22852715 166.0 + 0 ENSG00000228240.1 lincRNA TTTY17A 2 OTTHUMG00000043854.1 +64685 chrY HAVANA gene 22861112 22861834 452.0 - 0 ENSG00000276829.1 unprocessed_pseudogene AC016911.1 2 OTTHUMG00000188104.1 +64686 chrY HAVANA gene 22866544 22867756 1213.0 - 0 ENSG00000215537.3 processed_pseudogene ZNF736P11Y 2 OTTHUMG00000043857.1 +64687 chrY HAVANA gene 22936455 22973284 1346.0 + 0 ENSG00000226906.1 lincRNA TTTY4 2 OTTHUMG00000045294.1 +64688 chrY HAVANA gene 22973819 23005465 1436.0 + 0 ENSG00000183753.10 protein_coding BPY2 2 OTTHUMG00000058899.5 +64689 chrY HAVANA gene 23017063 23017821 759.0 + 0 ENSG00000244000.1 processed_pseudogene AC006366.1 2 OTTHUMG00000043858.1 +64690 chrY HAVANA gene 23025594 23026663 762.0 + 0 ENSG00000232764.1 processed_pseudogene TRIM60P8Y 2 OTTHUMG00000043859.1 +64691 chrY HAVANA gene 23049247 23051195 1465.0 + 0 ENSG00000233126.3 processed_pseudogene ZNF736P3Y 2 OTTHUMG00000044062.1 +64692 chrY HAVANA gene 23058030 23059186 816.0 + 0 ENSG00000227251.1 processed_pseudogene TRIM60P9Y 2 OTTHUMG00000044063.1 +64693 chrY HAVANA gene 23129355 23199094 4787.0 - 0 ENSG00000188120.14 protein_coding DAZ1 2 OTTHUMG00000044053.1 +64694 chrY HAVANA gene 23219434 23291356 4164.0 + 0 ENSG00000205944.11 protein_coding DAZ2 2 OTTHUMG00000044060.2 +64695 chrY HAVANA gene 23379484 23392697 639.0 + 0 ENSG00000205936.3 unprocessed_pseudogene PPP1R12BP2 2 OTTHUMG00000044061.1 +64696 chrY ENSEMBL gene 23423099 23423236 138.0 - 0 ENSG00000251925.1 snoRNA RF00156 3 +64697 chrY HAVANA gene 23462465 23472280 198.0 + 0 ENSG00000225189.1 unprocessed_pseudogene REREP1Y 2 OTTHUMG00000044055.1 +64698 chrY HAVANA gene 23523321 23525369 727.0 + 0 ENSG00000230073.1 unprocessed_pseudogene AC009947.1 2 OTTHUMG00000044056.1 +64699 chrY HAVANA gene 23537308 23546942 1157.0 - 0 ENSG00000215540.10 transcribed_processed_pseudogene RBMY2CP 2 OTTHUMG00000044057.2 +64700 chrY HAVANA gene 23549809 23551385 672.0 + 0 ENSG00000236647.1 unprocessed_pseudogene AC009947.2 2 OTTHUMG00000044059.1 +64701 chrY HAVANA gene 23581595 23614640 1433.0 + 0 ENSG00000225466.1 unprocessed_pseudogene OFD1P10Y 2 OTTHUMG00000044054.1 +64702 chrY HAVANA gene 23657839 23659058 403.0 - 0 ENSG00000224169.1 unprocessed_pseudogene HSFY6P 1 OTTHUMG00000044993.1 pseudo_consens +64703 chrY HAVANA gene 23659466 23667822 695.0 - 0 ENSG00000223407.1 unprocessed_pseudogene USP9YP18 2 OTTHUMG00000044994.1 +64704 chrY HAVANA gene 23674379 23675392 1014.0 + 0 ENSG00000226873.1 unprocessed_pseudogene CDY14P 1 OTTHUMG00000044995.1 pseudo_consens +64705 chrY HAVANA gene 23678504 23678835 332.0 + 0 ENSG00000227915.1 unprocessed_pseudogene ELOCP16 1 OTTHUMG00000044996.1 pseudo_consens +64706 chrY HAVANA gene 23681440 23694579 1063.0 - 0 ENSG00000169763.14 transcribed_unprocessed_pseudogene PRYP3 2 OTTHUMG00000044998.2 +64707 chrY HAVANA gene 23715922 23726808 1116.0 - 0 ENSG00000236620.1 unprocessed_pseudogene XKRYP3 1 OTTHUMG00000044981.1 pseudo_consens +64708 chrY HAVANA gene 23734193 23736249 443.0 + 0 ENSG00000224866.1 unprocessed_pseudogene USP9YP25 2 OTTHUMG00000044983.1 +64709 chrY ENSEMBL gene 23740942 23741105 164.0 - 0 ENSG00000252681.1 snRNA RNU1-97P 3 +64710 chrY HAVANA gene 23740258 23746693 563.0 - 0 ENSG00000232424.1 unprocessed_pseudogene USP9YP29 2 OTTHUMG00000044984.1 +64711 chrY HAVANA gene 23751188 23751760 573.0 + 0 ENSG00000232910.1 unprocessed_pseudogene RAB9AP1 2 OTTHUMG00000044985.1 +64712 chrY HAVANA gene 23762838 23765583 343.0 - 0 ENSG00000232845.1 unprocessed_pseudogene TRAPPC2P9 2 OTTHUMG00000044986.1 +64713 chrY HAVANA gene 23771232 23798150 1177.0 + 0 ENSG00000237302.1 unprocessed_pseudogene OFD1P11Y 2 OTTHUMG00000044987.1 +64714 chrY HAVANA gene 23808821 23809059 239.0 - 0 ENSG00000231540.1 processed_pseudogene ELOCP9 1 OTTHUMG00000044997.1 pseudo_consens +64715 chrY HAVANA gene 23855522 23857091 1570.0 - 0 ENSG00000223362.1 unprocessed_pseudogene CDY15P 1 OTTHUMG00000044980.1 pseudo_consens +64716 chrY HAVANA gene 23917241 23917723 483.0 - 0 ENSG00000231026.1 unprocessed_pseudogene XKRYP4 2 OTTHUMG00000044982.1 +64717 chrY HAVANA gene 23919905 23921510 480.0 + 0 ENSG00000224571.1 unprocessed_pseudogene USP9YP13 2 OTTHUMG00000044988.1 +64718 chrY HAVANA gene 23934953 23940101 717.0 + 0 ENSG00000226369.1 unprocessed_pseudogene USP9YP11 2 OTTHUMG00000044989.1 +64719 chrY HAVANA gene 23936727 23941622 344.0 - 0 ENSG00000280961.1 lincRNA TTTY3B 2 OTTHUMG00000189591.1 +64720 chrY ENSEMBL gene 23946618 23946771 154.0 - 0 ENSG00000251917.1 snRNA RNU1-86P 3 +64721 chrY HAVANA gene 23945927 23952293 570.0 - 0 ENSG00000227871.1 unprocessed_pseudogene USP9YP12 2 OTTHUMG00000044990.1 +64722 chrY HAVANA gene 23956569 23960218 597.0 + 0 ENSG00000231423.1 unprocessed_pseudogene RAB9AP5 2 OTTHUMG00000044991.1 +64723 chrY HAVANA gene 23967564 23970694 323.0 - 0 ENSG00000228465.1 unprocessed_pseudogene TRAPPC2P10 2 OTTHUMG00000044992.2 +64724 chrY HAVANA gene 23972780 23995081 1207.0 + 0 ENSG00000232585.1 unprocessed_pseudogene OFD1P12Y 2 OTTHUMG00000045044.1 +64725 chrY HAVANA gene 24006911 24007237 327.0 - 0 ENSG00000234081.1 processed_pseudogene ELOCP10 1 OTTHUMG00000045045.1 pseudo_consens +64726 chrY HAVANA gene 24045229 24048019 2675.0 - 0 ENSG00000172352.5 protein_coding CDY1B 2 OTTHUMG00000045037.1 retrogene +64727 chrY HAVANA gene 24049878 24051487 1282.0 - 0 ENSG00000231375.1 unprocessed_pseudogene CDY17P 1 OTTHUMG00000045046.1 pseudo_consens +64728 chrY HAVANA gene 24077799 24079812 412.0 + 0 ENSG00000237467.1 unprocessed_pseudogene USP9YP35 2 OTTHUMG00000045038.1 +64729 chrY HAVANA gene 24081704 24090346 881.0 - 0 ENSG00000229250.1 unprocessed_pseudogene USP9YP31 2 OTTHUMG00000045039.1 +64730 chrY HAVANA gene 24104107 24106018 1609.0 + 0 ENSG00000232205.1 unprocessed_pseudogene CDY18P 1 OTTHUMG00000045040.1 pseudo_consens +64731 chrY HAVANA gene 24142358 24157843 521.0 + 0 ENSG00000235981.2 unprocessed_pseudogene AC023274.2 2 OTTHUMG00000045041.1 +64732 chrY HAVANA gene 24168187 24174494 1298.0 + 0 ENSG00000223698.3 unprocessed_pseudogene GOLGA6L11P 1 OTTHUMG00000045042.2 pseudo_consens +64733 chrY HAVANA gene 24182477 24183071 595.0 + 0 ENSG00000230977.1 unprocessed_pseudogene AC023274.1 2 OTTHUMG00000045043.1 +64734 chrY HAVANA gene 24179316 24183505 490.0 - 0 ENSG00000242854.1 unprocessed_pseudogene DNM1P24 2 OTTHUMG00000045078.1 overlapping_locus +64735 chrY HAVANA gene 24183434 24187231 795.0 - 0 ENSG00000244231.1 processed_transcript CSPG4P2Y 2 OTTHUMG00000045073.1 overlapping_locus +64736 chrY HAVANA gene 24186509 24191870 3724.0 - 0 ENSG00000172342.5 unprocessed_pseudogene CSPG4P3Y 2 OTTHUMG00000045077.1 overlapping_locus +64737 chrY HAVANA gene 24196518 24206132 397.0 - 0 ENSG00000284071.1 unprocessed_pseudogene AC012005.2 1 OTTHUMG00000192106.2 pseudo_consens +64738 chrY ENSEMBL gene 24210958 24211216 259.0 - 0 ENSG00000274234.1 misc_RNA RN7SL818P 3 +64739 chrY HAVANA gene 24209567 24215581 1506.0 - 0 ENSG00000239533.6 transcribed_unprocessed_pseudogene GOLGA2P2Y 2 OTTHUMG00000045074.2 overlapping_locus +64740 chrY HAVANA gene 24232826 24238984 207.0 - 0 ENSG00000225491.1 unprocessed_pseudogene UBE2Q2P4Y 2 OTTHUMG00000045075.1 +64741 chrY HAVANA gene 24276245 24277026 782.0 + 0 ENSG00000224827.1 processed_pseudogene LINC00265-2P 2 OTTHUMG00000045102.1 +64742 chrY HAVANA gene 24278337 24281140 2328.0 - 0 ENSG00000233740.1 processed_pseudogene CICP2 1 OTTHUMG00000045105.1 pseudo_consens +64743 chrY HAVANA gene 24278681 24291346 454.0 + 0 ENSG00000248792.1 unprocessed_pseudogene LINC00266-2P 2 OTTHUMG00000045104.1 +64744 chrY HAVANA gene 24362335 24362409 75.0 - 0 ENSG00000279274.2 processed_pseudogene AC012005.1 2 OTTHUMG00000192107.1 +64745 chrY HAVANA gene 24396604 24403526 895.0 - 0 ENSG00000234399.1 unprocessed_pseudogene RBMY2XP 2 OTTHUMG00000045103.1 +64746 chrY HAVANA gene 24485332 24486463 166.0 + 0 ENSG00000227439.1 lincRNA TTTY17B 2 OTTHUMG00000046228.1 +64747 chrY HAVANA gene 24494709 24495583 574.0 - 0 ENSG00000224210.1 processed_pseudogene TRIM60P5Y 2 OTTHUMG00000045106.1 +64748 chrY HAVANA gene 24500263 24501505 1243.0 - 0 ENSG00000232003.2 processed_pseudogene ZNF736P12Y 2 OTTHUMG00000045107.1 +64749 chrY HAVANA gene 24570202 24607025 1346.0 + 0 ENSG00000235412.1 lincRNA TTTY4B 2 OTTHUMG00000045296.1 +64750 chrY HAVANA gene 24607560 24639207 1436.0 + 0 ENSG00000183795.8 protein_coding BPY2B 2 OTTHUMG00000045101.4 +64751 chrY HAVANA gene 24650808 24651534 727.0 + 0 ENSG00000240566.1 processed_pseudogene AC010153.1 2 OTTHUMG00000045108.2 +64752 chrY HAVANA gene 24659337 24660406 751.0 + 0 ENSG00000232976.1 processed_pseudogene TRIM60P10Y 2 OTTHUMG00000045111.1 +64753 chrY HAVANA gene 24683657 24684935 1279.0 + 0 ENSG00000226270.3 processed_pseudogene ZNF736P2Y 2 OTTHUMG00000045110.1 +64754 chrY HAVANA gene 24691791 24692932 801.0 + 0 ENSG00000227837.1 processed_pseudogene TRIM60P11Y 2 OTTHUMG00000045204.1 +64755 chrY HAVANA gene 24763069 24813492 3516.0 - 0 ENSG00000187191.14 protein_coding DAZ3 2 OTTHUMG00000045099.2 +64756 chrY HAVANA gene 24833843 24907040 4348.0 + 0 ENSG00000205916.11 protein_coding DAZ4 2 OTTHUMG00000045100.7 +64757 chrY HAVANA gene 24977176 24978317 791.0 - 0 ENSG00000278602.1 unprocessed_pseudogene AC006338.2 2 OTTHUMG00000188109.1 +64758 chrY HAVANA gene 24985201 24986476 1276.0 - 0 ENSG00000223978.1 processed_pseudogene ZNF736P1Y 2 OTTHUMG00000045205.1 +64759 chrY HAVANA gene 25009700 25010769 749.0 - 0 ENSG00000278197.1 unprocessed_pseudogene AC006338.1 2 OTTHUMG00000188110.1 +64760 chrY HAVANA gene 25018499 25019303 805.0 - 0 ENSG00000230819.1 processed_pseudogene ZNF736P5Y 2 OTTHUMG00000045198.1 +64761 chrY HAVANA gene 25030901 25062548 1436.0 - 0 ENSG00000185894.8 protein_coding BPY2C 2 OTTHUMG00000045199.3 +64762 chrY HAVANA gene 25063083 25099892 1346.0 - 0 ENSG00000228296.1 lincRNA TTTY4C 2 OTTHUMG00000045200.1 +64763 chrY HAVANA gene 25168599 25169841 1243.0 + 0 ENSG00000236379.2 processed_pseudogene ZNF736P4Y 2 OTTHUMG00000045206.1 +64764 chrY HAVANA gene 25174520 25175237 415.0 + 0 ENSG00000274899.1 processed_pseudogene AC006386.1 2 OTTHUMG00000188105.1 +64765 chrY HAVANA gene 25183643 25184773 166.0 - 0 ENSG00000223641.1 lincRNA TTTY17C 2 OTTHUMG00000045207.1 +64766 chrY HAVANA gene 25266584 25273531 912.0 + 0 ENSG00000227633.1 unprocessed_pseudogene RBMY2YP 2 OTTHUMG00000045208.1 +64767 chrY HAVANA gene 25307729 25307803 75.0 + 0 ENSG00000279115.2 processed_pseudogene AC006386.2 2 OTTHUMG00000192108.1 +64768 chrY HAVANA gene 25388992 25391811 2410.0 + 0 ENSG00000233652.1 processed_pseudogene CICP1 1 OTTHUMG00000045203.1 pseudo_consens +64769 chrY HAVANA gene 25393154 25394056 903.0 - 0 ENSG00000233944.1 processed_pseudogene LINC00265-3P 2 OTTHUMG00000045202.1 overlapping_locus +64770 chrY HAVANA gene 25378300 25394719 1192.0 - 0 ENSG00000228786.5 lincRNA LINC00266-4P 2 OTTHUMG00000045201.1 overlapping_locus +64771 chrY HAVANA gene 25431156 25437315 207.0 + 0 ENSG00000223636.1 unprocessed_pseudogene UBE2Q2P5Y 2 OTTHUMG00000045280.1 +64772 chrY ENSEMBL gene 25458926 25459184 259.0 + 0 ENSG00000278242.1 misc_RNA RN7SL725P 3 +64773 chrY HAVANA gene 25454561 25460572 1653.0 + 0 ENSG00000172297.7 unprocessed_pseudogene GOLGA2P3Y 1 OTTHUMG00000045281.1 pseudo_consens +64774 chrY HAVANA gene 25464006 25473621 397.0 + 0 ENSG00000284380.1 unprocessed_pseudogene AC006328.2 1 OTTHUMG00000192109.1 pseudo_consens +64775 chrY HAVANA gene 25478269 25483630 3724.0 + 0 ENSG00000172294.7 unprocessed_pseudogene CSPG4P4Y 2 OTTHUMG00000045284.1 overlapping_locus +64776 chrY HAVANA gene 25482908 25486705 795.0 + 0 ENSG00000240450.1 processed_transcript CSPG4P1Y 2 OTTHUMG00000045282.1 overlapping_locus +64777 chrY HAVANA gene 25486640 25487322 439.0 + 0 ENSG00000239304.1 processed_pseudogene DNM1P48 2 OTTHUMG00000045285.1 overlapping_locus +64778 chrY HAVANA gene 25487284 25487662 379.0 - 0 ENSG00000233619.1 processed_pseudogene AC006328.1 2 OTTHUMG00000045286.1 +64779 chrY HAVANA gene 25495651 25501958 1299.0 - 0 ENSG00000197092.5 unprocessed_pseudogene GOLGA6L16P 1 OTTHUMG00000045260.1 pseudo_consens +64780 chrY HAVANA gene 25512301 25527786 517.0 - 0 ENSG00000235583.2 unprocessed_pseudogene AC007562.1 2 OTTHUMG00000045264.1 +64781 chrY HAVANA gene 25564122 25566033 1613.0 - 0 ENSG00000237823.1 unprocessed_pseudogene CDY19P 1 OTTHUMG00000045266.1 pseudo_consens +64782 chrY HAVANA gene 25579790 25588444 829.0 + 0 ENSG00000229709.1 unprocessed_pseudogene USP9YP36 2 OTTHUMG00000045268.1 +64783 chrY HAVANA gene 25590323 25592345 421.0 - 0 ENSG00000232064.1 unprocessed_pseudogene USP9YP33 2 OTTHUMG00000045270.1 +64784 chrY HAVANA gene 25618644 25620253 1279.0 + 0 ENSG00000225609.1 unprocessed_pseudogene CDY20P 1 OTTHUMG00000045272.1 pseudo_consens +64785 chrY HAVANA gene 25622162 25624902 2625.0 + 0 ENSG00000172288.7 protein_coding CDY1 2 OTTHUMG00000045274.2 retrogene +64786 chrY HAVANA gene 25662900 25663226 327.0 + 0 ENSG00000270535.1 processed_pseudogene ELOCP34 1 OTTHUMG00000185077.1 pseudo_consens +64787 chrY HAVANA gene 25675060 25697346 1232.0 - 0 ENSG00000225287.1 unprocessed_pseudogene OFD1P13Y 2 OTTHUMG00000045290.1 +64788 chrY HAVANA gene 25699451 25702562 308.0 + 0 ENSG00000225256.1 unprocessed_pseudogene TRAPPC2P5 2 OTTHUMG00000045291.1 +64789 chrY HAVANA gene 25709908 25713557 597.0 - 0 ENSG00000223856.1 unprocessed_pseudogene RAB9AP2 2 OTTHUMG00000045292.1 +64790 chrY ENSEMBL gene 25723342 25723495 154.0 + 0 ENSG00000252426.1 snRNA RNU1-107P 3 +64791 chrY HAVANA gene 25723016 25724186 455.0 + 0 ENSG00000235004.1 unprocessed_pseudogene USP9YP30 2 OTTHUMG00000045255.1 +64792 chrY HAVANA gene 25728490 25733388 344.0 + 0 ENSG00000231141.1 lincRNA TTTY3 2 OTTHUMG00000045256.1 +64793 chrY HAVANA gene 25730011 25735160 715.0 - 0 ENSG00000232614.1 unprocessed_pseudogene USP9YP9 2 OTTHUMG00000045258.1 +64794 chrY HAVANA gene 25748596 25750206 485.0 - 0 ENSG00000225326.1 unprocessed_pseudogene USP9YP19 2 OTTHUMG00000045257.1 +64795 chrY HAVANA gene 25752388 25752870 483.0 + 0 ENSG00000223406.1 unprocessed_pseudogene XKRYP5 2 OTTHUMG00000045259.1 +64796 chrY HAVANA gene 25813013 25814566 1554.0 + 0 ENSG00000229343.1 unprocessed_pseudogene CDY22P 1 OTTHUMG00000045287.1 pseudo_consens +64797 chrY HAVANA gene 25860943 25861268 326.0 + 0 ENSG00000232695.1 processed_pseudogene ELOCP17 1 OTTHUMG00000045288.1 pseudo_consens +64798 chrY HAVANA gene 25871931 25898653 959.0 - 0 ENSG00000235511.1 unprocessed_pseudogene OFD1P18Y 2 OTTHUMG00000045289.1 +64799 chrY HAVANA gene 25904518 25907250 331.0 + 0 ENSG00000232914.1 unprocessed_pseudogene TRAPPC2P4 2 OTTHUMG00000045261.1 +64800 chrY HAVANA gene 25918323 25918895 573.0 - 0 ENSG00000223655.1 processed_pseudogene RAB9AP3 2 OTTHUMG00000045262.1 +64801 chrY ENSEMBL gene 25928979 25929142 164.0 + 0 ENSG00000252625.1 snRNA RNU1-40P 3 +64802 chrY HAVANA gene 25923388 25929826 558.0 + 0 ENSG00000230854.1 unprocessed_pseudogene USP9YP20 2 OTTHUMG00000045263.1 +64803 chrY HAVANA gene 25933833 25935881 432.0 - 0 ENSG00000227635.1 unprocessed_pseudogene USP9YP21 2 OTTHUMG00000045265.1 +64804 chrY HAVANA gene 25943268 25954152 1116.0 + 0 ENSG00000237546.1 unprocessed_pseudogene XKRYP6 1 OTTHUMG00000045267.1 pseudo_consens +64805 chrY HAVANA gene 25975549 25988069 444.0 + 0 ENSG00000172283.10 unprocessed_pseudogene PRYP4 2 OTTHUMG00000045269.2 +64806 chrY HAVANA gene 25991241 25991572 332.0 - 0 ENSG00000227867.1 processed_pseudogene ELOCP11 1 OTTHUMG00000045271.1 pseudo_consens +64807 chrY HAVANA gene 25994684 25995697 1014.0 - 0 ENSG00000231716.1 unprocessed_pseudogene CDY23P 1 OTTHUMG00000045273.1 pseudo_consens +64808 chrY HAVANA gene 26002254 26008856 661.0 + 0 ENSG00000234744.1 unprocessed_pseudogene USP9YP26 2 OTTHUMG00000045275.1 +64809 chrY HAVANA gene 26011435 26012237 318.0 + 0 ENSG00000233156.1 unprocessed_pseudogene HSFY8P 1 OTTHUMG00000045277.1 pseudo_consens +64810 chrY HAVANA gene 26055779 26088493 1392.0 - 0 ENSG00000234888.1 unprocessed_pseudogene OFD1P15Y 2 OTTHUMG00000045278.1 +64811 chrY HAVANA gene 26123674 26133308 1157.0 + 0 ENSG00000215507.10 transcribed_processed_pseudogene RBMY2DP 2 OTTHUMG00000045283.2 +64812 chrY HAVANA gene 26198331 26208148 200.0 - 0 ENSG00000235014.1 unprocessed_pseudogene REREP2Y 2 OTTHUMG00000046126.1 +64813 chrY HAVANA gene 26244351 26244573 223.0 - 0 ENSG00000225876.1 unprocessed_pseudogene AC024067.1 2 OTTHUMG00000036763.1 +64814 chrY ENSEMBL gene 26247384 26247521 138.0 + 0 ENSG00000251796.1 snoRNA RF00156 3 +64815 chrY HAVANA gene 26277923 26354418 1671.0 - 0 ENSG00000229238.3 unprocessed_pseudogene PPP1R12BP1 2 OTTHUMG00000036764.2 +64816 chrY ENSEMBL gene 26360989 26361092 104.0 + 0 ENSG00000252948.1 snRNA RNU6-1314P 3 +64817 chrY HAVANA gene 26400611 26401230 323.0 + 0 ENSG00000233843.1 processed_pseudogene CYCSP48 1 OTTHUMG00000036766.1 pseudo_consens +64818 chrY HAVANA gene 26409815 26420535 659.0 + 0 ENSG00000188399.5 unprocessed_pseudogene ANKRD36P1 2 OTTHUMG00000036761.1 +64819 chrY HAVANA gene 26453982 26454092 111.0 + 0 ENSG00000277146.1 processed_pseudogene AC013734.1 2 OTTHUMG00000188106.1 +64820 chrY HAVANA gene 26549425 26549743 319.0 + 0 ENSG00000224240.1 processed_pseudogene CYCSP49 1 OTTHUMG00000036760.1 pseudo_consens,overlapping_locus +64821 chrY HAVANA gene 26508213 26579690 1605.0 + 0 ENSG00000215506.5 unprocessed_pseudogene TPTE2P4 1 OTTHUMG00000036765.1 pseudo_consens,overlapping_locus +64822 chrY HAVANA gene 26586642 26591601 342.0 - 0 ENSG00000227629.1 unprocessed_pseudogene SLC25A15P1 2 OTTHUMG00000036811.1 +64823 chrY HAVANA gene 26626520 26627159 640.0 - 0 ENSG00000231514.1 processed_pseudogene CCNQP2 1 OTTHUMG00000036813.1 pseudo_consens,overlapping_locus +64824 chrY HAVANA gene 26594851 26634652 2337.0 - 0 ENSG00000237917.1 unprocessed_pseudogene PARP4P1 1 OTTHUMG00000036812.1 pseudo_consens,overlapping_locus +64825 chrY HAVANA gene 56855244 56855488 245.0 + 0 ENSG00000235857.1 processed_pseudogene CTBP2P1 1 OTTHUMG00000036770.1 pseudo_consens +64826 chrY HAVANA gene 56954332 56968979 9019.0 + 0 ENSG00000168939.11_PAR_Y protein_coding SPRY3 2 OTTHUMG00000022675.3 PAR +64827 chrY HAVANA gene 57015105 57016096 992.0 - 0 ENSG00000237801.6_PAR_Y processed_pseudogene AMD1P2 1 OTTHUMG00000022673.2 pseudo_consens,PAR +64828 chrY HAVANA gene 57062156 57062405 250.0 + 0 ENSG00000237040.6_PAR_Y processed_pseudogene DPH3P2 1 OTTHUMG00000022680.1 pseudo_consens,PAR +64829 chrY HAVANA gene 57067813 57130289 2667.0 + 0 ENSG00000124333.15_PAR_Y protein_coding VAMP7 2 OTTHUMG00000022679.2 PAR +64830 chrY HAVANA gene 57165512 57165845 334.0 - 0 ENSG00000228410.6_PAR_Y processed_pseudogene ELOCP24 1 OTTHUMG00000040493.1 pseudo_consens,PAR +64831 chrY HAVANA gene 57171890 57172769 880.0 - 0 ENSG00000223484.7_PAR_Y processed_pseudogene TRPC6P 1 OTTHUMG00000022681.1 pseudo_consens,PAR +64832 chrY HAVANA gene 57184101 57197337 2504.0 + 0 ENSG00000124334.17_PAR_Y protein_coding IL9R 2 OTTHUMG00000022720.1 overlapping_locus,PAR +64833 chrY HAVANA gene 57201143 57203357 1054.0 - 0 ENSG00000185203.12_PAR_Y antisense WASIR1 2 OTTHUMG00000022676.3 PAR +64834 chrY HAVANA gene 57190738 57208756 773.0 + 0 ENSG00000270726.6_PAR_Y processed_transcript AJ271736.1 2 OTTHUMG00000184987.2 overlapping_locus,PAR +64835 chrY HAVANA gene 57207346 57212230 4618.0 + 0 ENSG00000182484.15_PAR_Y transcribed_unprocessed_pseudogene WASH6P 2 OTTHUMG00000022677.5 overlapping_locus,PAR +64836 chrY HAVANA gene 57212184 57214397 1306.0 - 0 ENSG00000227159.8_PAR_Y unprocessed_pseudogene DDX11L16 2 OTTHUMG00000022678.1 PAR