Upload filter_civic_vcf.py

bin/filter_civic_vcf.py

@@ -59,6 +59,8 @@ def filter_csq_record(csq_record, keep_indices, field_names):
     kv_pairs = []
     for i, value in enumerate(filtered):
         if value:  # 只添加非空值
+            # 将值中的空格替换为下划线
+            value = value.replace(' ', '_')
             kv_pairs.append(f"{field_names[i]}={value}")
 
     return ';'.join(kv_pairs) if kv_pairs else ""
@@ -72,6 +74,8 @@ def filter_csq_record(csq_record, keep_indices, field_names):
     kv_pairs = []
     for i, value in enumerate(filtered):
         if value:  # 只添加非空值
+            # 将值中的空格替换为下划线
+            value = value.replace(' ', '_')
             kv_pairs.append(f"{field_names[i]}={value}")
 
     return ';'.join(kv_pairs) if kv_pairs else ""
@@ -101,8 +105,9 @@ def merge_csq_records(records_string):
     merged_pairs = []
     for name in NEW_FIELD_NAMES:
         if name in field_values and field_values[name]:
-            # 多个值用|连接
-            merged_pairs.append(f"{name}={'|'.join(field_values[name])}")
+            # 多个值用|连接，并将空格替换为下划线
+            merged_value = '|'.join(field_values[name]).replace(' ', '_')
+            merged_pairs.append(f"{name}={merged_value}")
 
     return ';'.join(merged_pairs) if merged_pairs else ""