| import numpy as np |
| import xarray as xr |
|
|
| __all__ = ["chunk", "print_xarray", "save_with_progress"] |
|
|
|
|
| def chunk(ds, time=1, **kwargs): |
| if isinstance(ds, xr.DataArray): |
| dims = {k: v for k, v in zip(ds.dims, ds.shape)} |
| else: |
| dims = {k: v for k, v in ds.sizes.items()} |
|
|
| if "time" in dims: |
| dims["time"] = time |
|
|
| for k, v in kwargs.items(): |
| if k in dims: |
| dims[k] = v |
|
|
| ds = ds.chunk(dims) |
| return ds |
|
|
|
|
| def print_xarray(ds, desp="", names=[]): |
|
|
| if isinstance(ds, xr.Dataset): |
| for v in ds: |
| print_xarray(ds[v], desp=desp, names=names) |
| return |
| |
| v = ds |
| msg = f"{v.name.upper()} {desp}: \nshape: \033[94m{v.shape}\033[0m" |
|
|
| if "time" in ds.dims: |
| start_date = ds.time[0].dt.date.item() |
| end_date = ds.time[-1].dt.date.item() |
| msg += f", time: \033[94m{len(ds.time)} = ({start_date} ~ {end_date})\033[0m" |
|
|
| if "lat" in ds.dims and "lon" in ds.dims: |
| lat = ds.lat.values |
| lon = ds.lon.values |
| msg += f", latlon: \033[94m({lat[0]:.3f} ~ {lat[-1]:.3f}) x ({lon[0]:.3f} ~ {lon[-1]:.3f})\033[0m" |
|
|
| if "level" in v.dims: |
| if len(names) > 0: |
| v = v.sel(level=np.intersect1d(names, v.level)) |
| for lvl in v.level.data: |
| x = v.sel(level=lvl).values |
| msg += f"\nlevel: {lvl:04d}, value: \033[91m{x.min():.3f} ~ {x.max():.3f}\033[0m" |
| elif "depth" in v.dims: |
| for lvl in v.depth.data: |
| x = v.sel(depth=lvl).values |
| msg += f"\ndepth: {lvl:.2f}, value: \033[91m{x.min():.3f} ~ {x.max():.3f}\033[0m" |
| elif "channel" in v.dims: |
| if len(names) > 0: |
| v = v.sel(channel=np.intersect1d(names, v.channel)) |
| for ch in v.channel.data: |
| x = v.sel(channel=ch).values |
| msg += f"\nchannel: {ch}, value: \033[91m{x.min():.3f} ~ {x.max():.3f}\033[0m" |
| else: |
| x = v.values |
| msg += f", value: \033[91m{x.min():.3f} ~ {x.max():.3f}\033[0m" |
|
|
| print(msg) |
|
|
|
|
|
|
| def save_with_progress(ds, save_name, dtype=np.float32): |
| from dask.diagnostics import ProgressBar |
|
|
| if 'time' in ds.dims: |
| ds = ds.assign_coords(time=ds.time.astype(np.datetime64)) |
| |
| ds = ds.astype(dtype) |
| if 'channel' in ds.coords and ds.coords['channel'].dtype == 'object': |
| ds = ds.assign_coords( |
| channel=ds.coords['channel'].astype('U50') |
| ) |
|
|
| if save_name.endswith(".nc"): |
| obj = ds.to_netcdf(save_name, compute=False) |
| elif save_name.endswith(".zarr"): |
| obj = ds.to_zarr(save_name, compute=False) |
| else: |
| raise ValueError("save_type must be 'nc' or 'zarr'!") |
| |
| with ProgressBar(): |
| obj.compute() |
|
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