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opeltre commited on
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c22034c
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1 Parent(s): 0587dae

fix center(atoms) polymorphism

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Files changed (1) hide show
  1. generation/Shells.jl +9 -5
generation/Shells.jl CHANGED
@@ -7,7 +7,7 @@ using PeriodicTable
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  using Printf
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  """Type of `GaussianBasis.BasisSet` parameters"""
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- const Basis = Tuple{Atom, Vector{BasisFunction}}
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  """
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  atom([Z, [xyz]])
@@ -47,8 +47,14 @@ Move a vector of atoms to a desired barycenter.
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  All atoms are treated as mass 1.
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  """
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- function center(atoms::Vector{Molecules.Atom{T, X}}) where T<:Real where X<:Real
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- center(atoms, SVector{3, X}([0, 0, 0]))
 
 
 
 
 
 
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  end
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  #--- Parse H atom once for all
@@ -65,5 +71,3 @@ end
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  Base.show(io::IO, ::MIME"text/plain", at::Atom) = begin
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  show(io, Molecules.string_repr(at))
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  end
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-
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-
 
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  using Printf
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  """Type of `GaussianBasis.BasisSet` parameters"""
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+ const Basis = Tuple{Vector{A}, Vector{S}} where {A<:Atom, S<:SphericalShell}
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  """
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  atom([Z, [xyz]])
 
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  All atoms are treated as mass 1.
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  """
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+ function center(atoms::Vector{<:Atom}, offset::SVector{3, <:Real})
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+ ctr = sum(a.xyz for a in atoms) / length(atoms)
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+ map(atoms) do a
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+ move(a, offset - ctr)
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+ end
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+ end
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+ function center(atoms::Vector{<:Atom})
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+ center(atoms, SVector{3, Float64}([0, 0, 0]))
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  end
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  #--- Parse H atom once for all
 
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  Base.show(io::IO, ::MIME"text/plain", at::Atom) = begin
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  show(io, Molecules.string_repr(at))
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  end