Add foldseek tokens for swissprot dataset
Browse files
generated_data/foldseek_toks/pdb_alphafolddb.foldseek_toks.fa.bz2
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:a979a306bfb2c5fb3e18a49126405bc3e7473ed13c92d2066480189162620221
|
| 3 |
+
size 66920496
|
generated_data/foldseek_toks/run.sh
ADDED
|
@@ -0,0 +1,8 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
#! /bin/bash
|
| 2 |
+
|
| 3 |
+
~/install/foldseek/bin/foldseek structureto3didescriptor \
|
| 4 |
+
--gpu 1 \
|
| 5 |
+
--threads 20 \
|
| 6 |
+
--chain-name-mode 1 \
|
| 7 |
+
/weka/scratch/weka/kellislab/rcalef/data/pdb_alphafolddb \
|
| 8 |
+
./pdb_alphafolddb.tsv
|