| """WildClean — loaders for the NON-redistributable benchmark pairs. |
| |
| The WildClean release ships 33 of the 42 paired dirty/clean sets directly |
| (see pairs/). The remaining 9 sources carry no license or a research-only |
| status, so we do NOT redistribute them — instead this script downloads them |
| from their origins and materializes them in exactly the layout the benchmark |
| expects (pairs/<name>/{dirty.csv,clean.csv}). |
| |
| Sources fetched here (origins, accessed 2026-06): |
| * ed2_restaurants — BigDaMa/ExampleDrivenErrorDetection (no license stated) |
| * cleanml_company / cleanml_movie — CleanML 2020 datasets zip (research use) |
| * fodors_zagats / dblp_acm / dblp_scholar — Magellan/DeepMatcher EM |
| benchmarks (UW-Madison pages; redistribution terms unclear) |
| * gidcl_imdb — SICS-FRC GIDCL imdb pair (no license stated) |
| * zeroed_billionaire / zeroed_tax100k — WelkinNi/ZeroED pairs (no license) |
| |
| Usage: |
| python loaders.py # materialize all 9 into ./pairs/ |
| python loaders.py --only ed2_restaurants gidcl_imdb |
| |
| Requires: pandas. Mirrors the harvest logic of the ScrubData repo |
| (training/harvest_stage2.py, training/harvest_stage3_paired.py) so the |
| resulting pairs are byte-compatible with the published results/paired_bench.json. |
| """ |
|
|
| from __future__ import annotations |
|
|
| import argparse |
| import difflib |
| import io |
| import re |
| import urllib.parse |
| import urllib.request |
| import zipfile |
| from pathlib import Path |
|
|
| import pandas as pd |
|
|
| PAIRS = Path(__file__).resolve().parent / "pairs" |
| UA = {"User-Agent": "wildclean-loader/1.0"} |
|
|
| |
| ED2 = "https://raw.githubusercontent.com/BigDaMa/ExampleDrivenErrorDetection/master/datasets" |
| CLEANML_ZIP = "https://www.dropbox.com/s/nerfrhbrseev928/CleanML-datasets-2020.zip?dl=1" |
| EM_BASE = "https://pages.cs.wisc.edu/~anhai/data1/deepmatcher_data/Structured" |
| GIDCL = "https://raw.githubusercontent.com/SICS-Fundamental-Research-Center/GIDCL/main/GEIL_Data/imdb/original" |
| ZEROED = "https://raw.githubusercontent.com/WelkinNi/ZeroED/main/data" |
|
|
| |
| EM_SETS = { |
| "fodors_zagats": ("Fodors-Zagats", "fodors_zagat", "B"), |
| "dblp_acm": ("DBLP-ACM", "dblp_acm", "A"), |
| "dblp_scholar": ("DBLP-GoogleScholar", "dblp_scholar", "A"), |
| } |
|
|
|
|
| |
| def _read_csv(src, **kw) -> pd.DataFrame: |
| try: |
| return pd.read_csv(src, dtype=str, keep_default_na=False, **kw) |
| except UnicodeDecodeError: |
| if hasattr(src, "seek"): |
| src.seek(0) |
| return pd.read_csv(src, dtype=str, keep_default_na=False, |
| encoding="latin-1", **kw) |
|
|
|
|
| def _read_url(url: str) -> pd.DataFrame: |
| req = urllib.request.Request(url, headers=UA) |
| with urllib.request.urlopen(req, timeout=300) as r: |
| return _read_csv(io.BytesIO(r.read())) |
|
|
|
|
| def _norm(s: str) -> str: |
| return "".join(ch.lower() for ch in str(s) if ch.isalnum()) |
|
|
|
|
| def _is_variant(dirty: str, clean: str) -> bool: |
| """True if `dirty` is a SURFACE VARIANT (typo / casing / punctuation / |
| minor abbreviation) of `clean` — a learnable canonicalization, not a |
| different valid value. Mirrors training/real_data.py.""" |
| nd, nc = _norm(dirty), _norm(clean) |
| if not nd or not nc: |
| return False |
| if nd == nc: |
| return True |
| return difflib.SequenceMatcher(None, nd, nc).ratio() >= 0.72 |
|
|
|
|
| def _write_pair(name: str, dirty: pd.DataFrame, clean: pd.DataFrame) -> None: |
| n = min(len(dirty), len(clean)) |
| dirty = dirty.head(n).reset_index(drop=True) |
| clean = clean.head(n).reset_index(drop=True) |
| d = PAIRS / name |
| d.mkdir(parents=True, exist_ok=True) |
| dirty.to_csv(d / "dirty.csv", index=False) |
| clean.to_csv(d / "clean.csv", index=False) |
| diff = sum((dirty.iloc[:, j].astype(str) != clean.iloc[:, j].astype(str)).sum() |
| for j in range(min(dirty.shape[1], clean.shape[1]))) |
| print(f" {name}: {n} rows x {dirty.shape[1]} cols, {diff} diff cells -> {d}") |
|
|
|
|
| |
| def load_ed2_restaurants() -> None: |
| frames = [] |
| for kind in ("dirty", "clean"): |
| req = urllib.request.Request(f"{ED2}/Restaurants_{kind}.csv", headers=UA) |
| with urllib.request.urlopen(req) as r: |
| frames.append(_read_csv(io.BytesIO(r.read()))) |
| dirty, clean = frames |
| for df in (dirty, clean): |
| for c in list(df.columns): |
| if c.lower() == "id": |
| df.drop(columns=[c], inplace=True) |
| _write_pair("ed2_restaurants", dirty, clean) |
|
|
|
|
| |
| def load_cleanml(members=("Company", "Movie")) -> None: |
| import tempfile |
| tmp = Path(tempfile.gettempdir()) / "cleanml-2020.zip" |
| if not tmp.exists(): |
| print(" downloading CleanML zip (large, one-time)...") |
| urllib.request.urlretrieve(CLEANML_ZIP, tmp) |
| zf = zipfile.ZipFile(tmp) |
| names = zf.namelist() |
| for ds in members: |
| raw = next((n for n in names if n.endswith(f"{ds}/raw/raw.csv")), None) |
| cln = next((n for n in names |
| if n.endswith(f"{ds}/raw/inconsistency_clean_raw.csv")), None) |
| if not raw or not cln: |
| print(f" cleanml_{ds.lower()}: pair not found in zip — skipped") |
| continue |
| dirty = _read_csv(zf.open(raw)) |
| clean = _read_csv(zf.open(cln)) |
| _write_pair(f"cleanml_{ds.lower()}", dirty, clean) |
|
|
|
|
| |
| def load_em() -> None: |
| """Turn entity-matching benchmarks into row-aligned pair TABLES: one row per |
| gold match, dirty side = messy table, clean side = canonical table. Matched |
| records may legitimately DISAGREE on an attribute (cuisine classification, |
| author-list format) — that is not an error; only surface-variant diffs are |
| kept as (dirty, clean) corrections, otherwise the messy value is accepted |
| as truth on both sides (the VARIANT MASK).""" |
| for name, (zdir, stem, canon_side) in EM_SETS.items(): |
| req = urllib.request.Request(f"{EM_BASE}/{zdir}/{stem}_raw_data.zip", |
| headers=UA) |
| with urllib.request.urlopen(req) as r: |
| zf = zipfile.ZipFile(io.BytesIO(r.read())) |
| A = _read_csv(zf.open("tableA.csv")) |
| B = _read_csv(zf.open("tableB.csv")) |
| M = _read_csv(zf.open("matches.csv")) |
| a = A.set_index(A.columns[0]) |
| b = B.set_index(B.columns[0]) |
| cols = [c for c in a.columns if c in b.columns] |
| dirty_rows, clean_rows, seen = [], [], set() |
| masked = 0 |
| for _, m in M.iterrows(): |
| ia, ib = str(m.iloc[0]), str(m.iloc[1]) |
| if ia not in a.index or ib not in b.index or ia in seen: |
| continue |
| seen.add(ia) |
| ra = a.loc[ia] if not isinstance(a.loc[ia], pd.DataFrame) else a.loc[ia].iloc[0] |
| rb = b.loc[ib] if not isinstance(b.loc[ib], pd.DataFrame) else b.loc[ib].iloc[0] |
| canon, messy = (ra, rb) if canon_side == "A" else (rb, ra) |
| drow, crow = [], [] |
| for c in cols: |
| dv, cv = str(messy[c]), str(canon[c]) |
| if dv != cv and not _is_variant(dv, cv): |
| cv = dv |
| masked += 1 |
| drow.append(dv) |
| crow.append(cv) |
| dirty_rows.append(drow) |
| clean_rows.append(crow) |
| print(f" {name}: masked {masked} non-variant attribute disagreements") |
| _write_pair(name, pd.DataFrame(dirty_rows, columns=cols), |
| pd.DataFrame(clean_rows, columns=cols)) |
|
|
|
|
| |
| def load_gidcl_imdb(max_clean_sample: int = 30000) -> None: |
| """Row-aligned SUBSET of the 1M-row GIDCL imdb pair: every dirty row plus a |
| deterministic sample of clean rows (keeps the pair small but error-complete).""" |
| dirty = _read_url(f"{GIDCL}/dirty.csv") |
| clean = _read_url(f"{GIDCL}/clean.csv") |
| n = min(len(dirty), len(clean)) |
| dirty, clean = dirty.head(n), clean.head(n) |
| neq = (dirty.astype(str).values != clean.astype(str).values).any(axis=1) |
| err_idx = dirty.index[neq] |
| clean_idx = dirty.index[~neq][:: max(1, (n - len(err_idx)) // max_clean_sample)][:max_clean_sample] |
| keep = sorted(set(err_idx) | set(clean_idx)) |
| _write_pair("gidcl_imdb", dirty.loc[keep], clean.loc[keep]) |
|
|
|
|
| |
| def load_zeroed(names=("billionaire", "tax100k")) -> None: |
| for nm in names: |
| dirty = _read_url(f"{ZEROED}/{nm}_error-01.csv") |
| clean = _read_url(f"{ZEROED}/{nm}_clean.csv") |
| _write_pair(f"zeroed_{nm}", dirty, clean) |
|
|
|
|
| LOADERS = { |
| "ed2_restaurants": load_ed2_restaurants, |
| "cleanml": load_cleanml, |
| "em": load_em, |
| "gidcl_imdb": load_gidcl_imdb, |
| "zeroed": load_zeroed, |
| } |
|
|
|
|
| def main() -> None: |
| ap = argparse.ArgumentParser(description=__doc__) |
| ap.add_argument("--only", nargs="*", default=None, |
| help=f"subset of loaders to run: {sorted(LOADERS)}") |
| args = ap.parse_args() |
| todo = args.only or list(LOADERS) |
| print(f"WildClean loaders -> {PAIRS}") |
| for key in todo: |
| if key not in LOADERS: |
| print(f" unknown loader '{key}' (choices: {sorted(LOADERS)})") |
| continue |
| print(f"[{key}]") |
| LOADERS[key]() |
| print("done — the full 42-pair benchmark is now materialized under pairs/.") |
|
|
|
|
| if __name__ == "__main__": |
| main() |
|
|