Sync runs/local-2026-10-21-ablation (2026-10-22 00:05 BDT)

runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+none.base.cmd

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+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/balanced+none.base.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/balanced+none.base.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/balanced+none.base.json --no-nni --divide-score balanced

runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+none.base.json

@@ -0,0 +1,151 @@
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+}

runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+none.base.time

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+4.37,239668

runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+none.base.tre

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runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+rel.chain.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/balanced+rel.chain.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/balanced+rel.chain.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/balanced+rel.chain.json --starting-tree /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/stored-texas-full/1000-taxon/R1/balanced+none.tre --no-divide

runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+rel.chain.json

@@ -0,0 +1,151 @@
+{
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+}

runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+rel.chain.time

@@ -0,0 +1 @@
+1.02,225488

runs/local-2026-10-21-ablation/idcheck/1000/R1/balanced+rel.chain.tre

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runs/local-2026-10-21-ablation/idcheck/1000/R1/default+none.base.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+none.base.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+none.base.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+none.base.json --no-nni

runs/local-2026-10-21-ablation/idcheck/1000/R1/default+none.base.json

@@ -0,0 +1,151 @@
+{
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+}

runs/local-2026-10-21-ablation/idcheck/1000/R1/default+none.base.time

@@ -0,0 +1 @@
+7.01,250932

runs/local-2026-10-21-ablation/idcheck/1000/R1/default+none.base.tre

@@ -0,0 +1 @@
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runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.chain.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+rel.chain.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+rel.chain.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+rel.chain.json --starting-tree /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/stored-texas-full/1000-taxon/R1/default+none.tre --no-divide

runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.chain.json

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+}

runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.chain.time

@@ -0,0 +1 @@
+0.79,215408

runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.chain.tre

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runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.full.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+rel.full.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+rel.full.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/default+rel.full.json

runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.full.json

@@ -0,0 +1,151 @@
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runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.full.time

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runs/local-2026-10-21-ablation/idcheck/1000/R1/default+rel.full.tre

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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+none.base.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre+none.base.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre+none.base.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre+none.base.json --no-nni --no-divide

runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+none.base.json

@@ -0,0 +1,151 @@
+{
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+  "taxa": 1001,
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+  "progress": "off",
+  "divide": false,
+  "divide_score": "quartet",
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+  "bipartition_test_available": false,
+  "bipartition_test_complete_genes": false,
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+  "nni_move_cap": true,
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+  "taxon_registry_physical_labels": 1001000,
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+  "bipartition_test_distance_queries": 0,
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+}

runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+none.base.time

@@ -0,0 +1 @@
+0.56,242708

runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+none.base.tre

@@ -0,0 +1 @@
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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+rel.chain.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre+rel.chain.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre+rel.chain.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre+rel.chain.json --starting-tree /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/stored-texas-full/1000-taxon/R1/mre+none.tre --no-divide

runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+rel.chain.json

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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+rel.chain.time

@@ -0,0 +1 @@
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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre+rel.chain.tre

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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+none.base.cmd

@@ -0,0 +1 @@
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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+none.base.json

@@ -0,0 +1,151 @@
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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+none.base.time

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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+none.base.tre

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runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+rel.chain.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre_nni_div+rel.chain.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre_nni_div+rel.chain.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/mre_nni_div+rel.chain.json --starting-tree /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/stored-texas-full/1000-taxon/R1/mre_nni_div+none.tre --no-divide

runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+rel.chain.json

@@ -0,0 +1,151 @@
+{
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+}

runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+rel.chain.time

@@ -0,0 +1 @@
+0.78,211224

runs/local-2026-10-21-ablation/idcheck/1000/R1/mre_nni_div+rel.chain.tre

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runs/local-2026-10-21-ablation/idcheck/1000/R1/no_test+none.base.cmd

@@ -0,0 +1 @@
+/usr/bin/time -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/no_test+none.base.time -f %e,%M nice -n 10 /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/bin/qraft -i /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/inputs/1000-taxon/R1/gt-cleaned-rooted-og-0.tre -o /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/no_test+none.base.tre -t 8 --no-progress --stats-json /home/risenfromashes/Documents/code/qraft-results-update/phase2/e1/idcheck/1000/R1/no_test+none.base.json --no-nni --no-bipartition-test

runs/local-2026-10-21-ablation/idcheck/1000/R1/no_test+none.base.json

@@ -0,0 +1,151 @@
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+}

runs/local-2026-10-21-ablation/idcheck/1000/R1/no_test+none.base.time

@@ -0,0 +1 @@
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runs/local-2026-10-21-ablation/idcheck/1000/R1/no_test+none.base.tre

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