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README.md
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| 1 |
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# 3D Slicer Medical Imaging GUI Benchmark Dataset (CSV Format)
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## Dataset Description
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This dataset contains **315 end-to-end GUI automation tasks** for 3D Slicer medical imaging software, focusing on MRI brain analysis workflows.
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### Dataset Summary
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- **Total Tasks**: 315
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- **Total Images**: 100 unique screenshots (file paths only)
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- **Application**: 3D Slicer (medical imaging software)
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- **Domain**: Medical imaging, MRI brain analysis
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- **Format**: CSV with file paths (ultra memory-efficient)
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### Supported Tasks
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- GUI automation
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- Medical imaging workflows
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- Visual grounding
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- Action prediction
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- Task planning
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## Dataset Structure
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The dataset is provided as a CSV file with the following columns:
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- `serial_number`: Task number (1-315)
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- `task_id`: Unique identifier (e.g., "3dslicer_endtoend_001")
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- `task`: Natural language task description
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- `image_sequence`: Screenshot sequence (→ separated)
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- `json_data`: Complete task data in JSON format
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- `num_steps`: Number of steps in the trajectory
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- `num_images`: Number of images for this task
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- `image_paths`: Pipe-separated file paths to images
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- `images_dir`: Base directory for images
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### JSON Data Structure
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The `json_data` field contains:
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```json
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{
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"id": "3dslicer_endtoend_001",
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"initial_state": {
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"application": "3D Slicer",
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"display_resolution": [1920, 1080],
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"loaded_image": "Import_Akash_Data.png"
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},
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"instruction": "Task description...",
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"trajectory": [
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{
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"step": 1,
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"action": "CLICK",
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"target": "Load Data (Akash)",
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"screenshot": "Import_Akash_Data.png",
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"note": "Step 1: Interacting with UI elements",
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"bbox": [1054, 0, 1089, 35]
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}
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],
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"outputs": {
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"final_file": "task_1_output.png",
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"verification": {...},
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"success": true
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}
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}
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```
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### Action Types
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- **CLICK**: Button clicks, menu selections (71.1%)
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- **SEGMENT**: Drawing ROIs, measurements (15.9%)
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- **COMPLETE**: Task completion (5.8%)
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- **TEXT**: Text input (3.2%)
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- **ZOOM**: Zoom operations (2.0%)
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- **SCROLL**: Navigation (2.0%)
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## Usage
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```python
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import pandas as pd
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import json
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from PIL import Image
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import os
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# Load CSV dataset
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df = pd.read_csv("3dslicer_benchmark.csv")
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# Access a task
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task = df.iloc[0]
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print(f"Task: {task['task']}")
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print(f"Steps: {task['num_steps']}")
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# Parse JSON data
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task_json = json.loads(task['json_data'])
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print(f"Trajectory: {len(task_json['trajectory'])} steps")
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# Load images on-demand
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image_paths = task['image_paths'].split('|')
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for i, img_path in enumerate(image_paths):
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if os.path.exists(img_path):
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img = Image.open(img_path)
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print(f"Image {i+1}: {img.size}")
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```
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## Memory Efficiency
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This CSV-based approach provides:
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- ✅ **Ultra-low memory usage** - no images loaded into memory
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- ✅ **Fast loading** - CSV loads in seconds
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- ✅ **Flexible access** - load images only when needed
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- ✅ **Easy sharing** - single CSV file
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- ✅ **Scalable** - works with any number of images
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## Dataset Creation
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This dataset was created using:
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- Manual annotation of 3D Slicer workflows
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- Automated bounding box extraction (red/orange/yellow highlights)
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- Robust action inference with strict guardrails
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- Ultra memory-efficient CSV processing
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### Quality Assurance
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- ✅ 100% consistent actions for same UI elements
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- ✅ 100% consistent bounding boxes for same screenshots
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- ✅ Only CLICK actions have bounding boxes
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- ✅ All bounding boxes extracted from images
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- ✅ Strict guardrails prevent inconsistencies
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- ✅ Ultra memory-efficient processing
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## Citation
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```bibtex
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@dataset{3dslicer_benchmark_2024,
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title={3D Slicer Medical Imaging GUI Benchmark Dataset},
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author={Rishu Kumar},
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year={2024},
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url={https://huggingface.co/datasets/rishuKumar404/MedUI_3DSlicer_CSV}
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}
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```
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## License
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MIT License
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