Create README_eye-conjectiva_MedThinkSeg.md
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eye-conjectiva/README_eye-conjectiva_MedThinkSeg.md
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# eye-conjectiva (Eye Conjunctiva Segmentation Dataset) — packaged in `saiteja33/MedThink-Seg/eye-conjectiva`
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This README documents:
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1) **The original Eye Conjunctiva Segmentation Dataset** (what it contains, size, and original file structure), and
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2) **How the dataset is organized inside this Hugging Face repo** (`saiteja33/MedThink-Seg`, under the `eye-conjectiva/` directory).
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---
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## 1) Original dataset (source)
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**Original dataset record (Mendeley Data, Version 1):**
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https://data.mendeley.com/datasets/yxwjgcndg2/1
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DOI: `10.17632/yxwjgcndg2.1`
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### What kind of images are included?
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- **Modality:** RGB photographs of the human **eye conjunctiva**.
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- **Acquisition:** captured using two smartphones (**OnePlus 9R** and **OnePlus 9 Pro**) under adequate room lighting; lower eyelid gently pulled down to expose conjunctiva.
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- **Image size / resolution:** images are **high-resolution ~3000 × 4000** pixels; **masks match the same resolution**.
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- **Annotation tool:** labeled with **Labelme**.
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### Dataset size and counts
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- **Total images:** **547** conjunctiva eye images.
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### Labels / annotations
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- mask sets are provided:
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- **Masks Annotator 1**
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> The Mendeley record does not specify the exact pixel-value encoding (e.g., binary 0/255). Inspect a few masks to confirm your expected mask format.
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## 2) Dataset structure in this Hugging Face repo (`saiteja33/MedThink-Seg/eye-conjectiva`)
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**HF path:** `eye-conjectiva/`
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**Repo size (HF UI):** ~**4.58 GB**
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### Directory structure
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This packaging contains only images + masks:
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```
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eye-conjectiva/
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├─ images/ # conjunctiva images (PNG)
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└─ masks/ # segmentation masks (PNG), same filenames as images/
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```
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### Naming convention (HF packaging)
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- Filenames are numeric, like:
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- `1.png`, `10.png`, `100.png`, ...
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- **Image ↔ mask pairing rule:** `eye-conjectiva/images/<name>.png` pairs with `eye-conjectiva/masks/<name>.png`.
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### File sizes (HF packaging)
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- Images are large PNGs (typically several MB each).
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- Masks are much smaller PNGs (typically a few KB to tens of KB).
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> Note: The original dataset provides **two** annotators’ masks; this HF packaging exposes a **single** `masks/` folder. If you need both annotators, download from Mendeley.
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---
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## How to download / use (recommended)
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### A) Download only `eye-conjectiva/` from this HF repo
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```python
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from huggingface_hub import snapshot_download
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local_dir = snapshot_download(
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repo_id="saiteja33/MedThink-Seg",
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repo_type="dataset",
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allow_patterns=["eye-conjectiva/**"], # only pull this subdir
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)
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print(local_dir)
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```
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### B) Create (image, mask) pairs
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```python
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from pathlib import Path
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root = Path(local_dir) / "eye-conjectiva"
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img_dir = root / "images"
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msk_dir = root / "masks"
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images = sorted(img_dir.glob("*.png"))
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pairs = [(p, msk_dir / p.name) for p in images]
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# Quick checks
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missing = [p.name for p, m in pairs if not m.exists()]
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print("num_images:", len(images))
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print("missing_masks:", len(missing))
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print("example_pair:", pairs[0])
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```
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### C) Load with 🤗 Datasets (images only)
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If you want to load just the images as a dataset:
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```python
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from datasets import load_dataset
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ds_imgs = load_dataset("imagefolder", data_dir=str(img_dir))
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print(ds_imgs)
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```
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(For paired image+mask training, most people keep pairs via the folder structure as in section **B**.)
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---
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## Citation
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If you use this dataset, please cite the Mendeley record:
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- *Eye Conjunctiva Segmentation Dataset* (Mendeley Data, V1). DOI: `10.17632/yxwjgcndg2.1`
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