sanaa13 commited on
Commit
9732fdd
·
verified ·
1 Parent(s): e93d48c

Update breastmnist4.py

Browse files
Files changed (1) hide show
  1. breastmnist4.py +19 -61
breastmnist4.py CHANGED
@@ -1,17 +1,13 @@
 
1
  import datasets
2
- import numpy as np
3
- import numpy as np
4
- import requests
5
- import datasets
6
- import os
7
 
8
  class BreastMNIST(datasets.GeneratorBasedBuilder):
9
  VERSION = datasets.Version("1.0.0")
10
-
11
  def _info(self):
12
  return datasets.DatasetInfo(
13
  features=datasets.Features({
14
- "image": datasets.Array3D(shape=(28, 28, 1), dtype="uint8"), # Adjust shape if necessary
15
  "label": datasets.ClassLabel(names=["benign", "malignant"]) # Adjust based on your labels
16
  }),
17
  description="BreastMNIST dataset containing medical imaging data",
@@ -19,60 +15,22 @@ class BreastMNIST(datasets.GeneratorBasedBuilder):
19
  )
20
 
21
  def _split_generators(self, dl_manager):
22
- # Here you would define how to split your dataset
 
 
 
23
  return [
24
- datasets.SplitGenerator(
25
- name=datasets.Split.TRAIN,
26
- gen_kwargs={"split": "train"},
27
- ),
28
- datasets.SplitGenerator(
29
- name=datasets.Split.TEST,
30
- gen_kwargs={"split": "test"},
31
- ),
32
- datasets.SplitGenerator(
33
- name=datasets.Split.VALIDATION,
34
- gen_kwargs={"split": "validation"},
35
- ),
36
  ]
37
 
38
- def _download_data(self, url):
39
- # Download the dataset and save it locally
40
- response = requests.get(url)
41
- if response.status_code == 200:
42
- with open("breastmnist4.npz", "wb") as f:
43
- f.write(response.content)
44
- else:
45
- raise ValueError(f"Failed to download the dataset from {url}")
46
-
47
- def _generate_examples(self, filepath , split):
48
- # Define the URL for the dataset
49
- url =filepath
50
-
51
- # Download the dataset
52
- self._download_data(url)
53
-
54
- # Load the dataset from the local file
55
- data = np.load("breastmnist4.npz", allow_pickle=True)
56
-
57
- # Yield examples based on the split
58
- if split == "train":
59
- for i in range(len(data['train_images'])):
60
- yield i, {
61
- "image": data['train_images'][i],
62
- "label": data['train_labels'][i],
63
- }
64
- elif split == "test":
65
- for i in range(len(data['test_images'])):
66
- yield i, {
67
- "image": data['test_images'][i],
68
- "label": data['test_labels'][i],
69
- }
70
- elif split == "validation":
71
- for i in range(len(data['val_images'])):
72
- yield i, {
73
- "image": data['val_images'][i],
74
- "label": data['val_labels'][i],
75
- }
76
-
77
- # Optionally, remove the downloaded file after loading
78
- os.remove("breastmnist4.npz")
 
1
+ import pandas as pd
2
  import datasets
 
 
 
 
 
3
 
4
  class BreastMNIST(datasets.GeneratorBasedBuilder):
5
  VERSION = datasets.Version("1.0.0")
6
+
7
  def _info(self):
8
  return datasets.DatasetInfo(
9
  features=datasets.Features({
10
+ "image": datasets.Array3D(shape=(28, 28, 1), dtype="float32"), # Use Array3D for image shapes
11
  "label": datasets.ClassLabel(names=["benign", "malignant"]) # Adjust based on your labels
12
  }),
13
  description="BreastMNIST dataset containing medical imaging data",
 
15
  )
16
 
17
  def _split_generators(self, dl_manager):
18
+ train_data = "breastmnist_train.parquet"
19
+ test_data = "breastmnist_test.parquet"
20
+ val_data = "breastmnist_val.parquet"
21
+
22
  return [
23
+ datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": train_data}),
24
+ datasets.SplitGenerator(name=datasets.Split.TEST, gen_kwargs={"filepath": test_data}),
25
+ datasets.SplitGenerator(name=datasets.Split.VALIDATION, gen_kwargs={"filepath": val_data}),
 
 
 
 
 
 
 
 
 
26
  ]
27
 
28
+ def _generate_examples(self, filepath):
29
+ # Load the Parquet file
30
+ df = pd.read_parquet(filepath)
31
+
32
+ for idx, row in df.iterrows():
33
+ yield idx, {
34
+ "image": row["image"], # Ensure this matches the expected shape
35
+ "label": row["label"],
36
+ }