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Datasets:
scbirlab
/
thomas-2018-spark-wt

Tasks:
Text Classification
Modalities:
Tabular
Text
Formats:
csv
Size:
100K - 1M
Tags:
chemistry
biology
antibiotics
SMILES
Libraries:
Datasets
Dask
License:
Dataset card Data Studio Files
xet
 Community
13
eachanjohnson commited on
Commit
3eaab09
·
verified ·
1 Parent(s): 3c72da7

Further cleaning and add genotype (#10)

Browse files

- Update README (f1cd9be5e0b0f7ba86e637392ca657004bf3df65)
- Update data (4af6769d7090a8255997f34f903b64069cf87fb2)
- Update column descriptions (647faded1bd39302dbdea23065f073a31ff2cf02)

Files changed (46) hide show
  1. Acinetobacter-baumannii/scaffold-split-test.csv.gz +2 -2
  2. Acinetobacter-baumannii/scaffold-split-train.csv.gz +2 -2
  3. Acinetobacter-baumannii/scaffold-split-validation.csv.gz +2 -2
  4. Acinetobacter-baumannii/scaffold-split.csv.gz +2 -2
  5. Brucella-abortus/scaffold-split-test.csv.gz +2 -2
  6. Brucella-abortus/scaffold-split-train.csv.gz +2 -2
  7. Brucella-abortus/scaffold-split-validation.csv.gz +2 -2
  8. Brucella-abortus/scaffold-split.csv.gz +2 -2
  9. Escherichia-coli/scaffold-split-test.csv.gz +2 -2
  10. Escherichia-coli/scaffold-split-train.csv.gz +2 -2
  11. Escherichia-coli/scaffold-split-validation.csv.gz +2 -2
  12. Escherichia-coli/scaffold-split.csv.gz +2 -2
  13. Francisella-tularensis/scaffold-split-test.csv.gz +2 -2
  14. Francisella-tularensis/scaffold-split-train.csv.gz +2 -2
  15. Francisella-tularensis/scaffold-split-validation.csv.gz +2 -2
  16. Francisella-tularensis/scaffold-split.csv.gz +2 -2
  17. Klebsiella-pneumoniae/scaffold-split-test.csv.gz +2 -2
  18. Klebsiella-pneumoniae/scaffold-split-train.csv.gz +2 -2
  19. Klebsiella-pneumoniae/scaffold-split-validation.csv.gz +2 -2
  20. Klebsiella-pneumoniae/scaffold-split.csv.gz +2 -2
  21. Pseudomonas-aeruginosa/scaffold-split-test.csv.gz +2 -2
  22. Pseudomonas-aeruginosa/scaffold-split-train.csv.gz +2 -2
  23. Pseudomonas-aeruginosa/scaffold-split-validation.csv.gz +2 -2
  24. Pseudomonas-aeruginosa/scaffold-split.csv.gz +2 -2
  25. README.md +10 -8
  26. Staphylococcus-aureus/scaffold-split-test.csv.gz +2 -2
  27. Staphylococcus-aureus/scaffold-split-train.csv.gz +2 -2
  28. Staphylococcus-aureus/scaffold-split-validation.csv.gz +2 -2
  29. Staphylococcus-aureus/scaffold-split.csv.gz +2 -2
  30. Streptococcus-pneumoniae/scaffold-split-test.csv.gz +2 -2
  31. Streptococcus-pneumoniae/scaffold-split-train.csv.gz +2 -2
  32. Streptococcus-pneumoniae/scaffold-split-validation.csv.gz +2 -2
  33. Streptococcus-pneumoniae/scaffold-split.csv.gz +2 -2
  34. Yersinia-enterocolitica/scaffold-split-test.csv.gz +2 -2
  35. Yersinia-enterocolitica/scaffold-split-train.csv.gz +2 -2
  36. Yersinia-enterocolitica/scaffold-split-validation.csv.gz +2 -2
  37. Yersinia-enterocolitica/scaffold-split.csv.gz +2 -2
  38. Yersinia-pestis/scaffold-split-test.csv.gz +2 -2
  39. Yersinia-pestis/scaffold-split-train.csv.gz +2 -2
  40. Yersinia-pestis/scaffold-split-validation.csv.gz +2 -2
  41. Yersinia-pestis/scaffold-split.csv.gz +2 -2
  42. all/scaffold-split-test.csv.gz +2 -2
  43. all/scaffold-split-train.csv.gz +2 -2
  44. all/scaffold-split-validation.csv.gz +2 -2
  45. spark-accumulation-wt.csv.gz +2 -2
  46. species-with-dataset.tsv +8 -8
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README.md CHANGED
@@ -133,15 +133,15 @@ Species specific configurations can be accessed:
133
  | configuration | n_rows |
134
  | ------------------------ | ------ |
135
  | Acinetobacter-baumannii | 2148 |
136
- | Brucella-abortus | 9946 |
137
- | Escherichia-coli | 20247 |
138
- | Francisella-tularensis | 9671 |
139
- | Klebsiella-pneumoniae | 3718 |
140
- | Pseudomonas-aeruginosa | 15478 |
141
- | Staphylococcus-aureus | 1915 |
142
  | Streptococcus-pneumoniae | 1254 |
143
  | Yersinia-enterocolitica | 1405 |
144
- | Yersinia-pestis | 10002 |
145
 
146
  ### Dataset Description
147
 
@@ -173,7 +173,9 @@ Developing chemistry models for antibiotic drug discovery.
173
  - **mic_method:** Original method for meauring the MIC
174
  - **species:** Bacterial species
175
  - **strain_name:** Strain of bacterial species
176
- - **strain_name_full:** Full name of bacterial strain, concatenation of `species` and `strain_name`
 
 
177
  - **accumulation_phenotype:** Whether efflux deficient. In this dataset, all "Wild type"
178
  - **mic_condition:** Original condition for measuring MIC
179
  - **id:** Numerical almost-unique identifier of compound
 
133
  | configuration | n_rows |
134
  | ------------------------ | ------ |
135
  | Acinetobacter-baumannii | 2148 |
136
+ | Brucella-abortus | 9947 |
137
+ | Escherichia-coli | 19660 |
138
+ | Francisella-tularensis | 9672 |
139
+ | Klebsiella-pneumoniae | 3713 |
140
+ | Pseudomonas-aeruginosa | 15454 |
141
+ | Staphylococcus-aureus | 1914 |
142
  | Streptococcus-pneumoniae | 1254 |
143
  | Yersinia-enterocolitica | 1405 |
144
+ | Yersinia-pestis | 10003 |
145
 
146
  ### Dataset Description
147
 
 
173
  - **mic_method:** Original method for meauring the MIC
174
  - **species:** Bacterial species
175
  - **strain_name:** Strain of bacterial species
176
+ - **strain_genotype:** Genotype of bacterial strain
177
+ - **full_strain_name:** Full name of bacterial strain, concatenation of `species` and `strain_name`
178
+ - **full_strain_name_with_genotype:** Full name of bacterial strain, concatenation of `species`, `strain_name`, and `strain_genotype`
179
  - **accumulation_phenotype:** Whether efflux deficient. In this dataset, all "Wild type"
180
  - **mic_condition:** Original condition for measuring MIC
181
  - **id:** Numerical almost-unique identifier of compound
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