chore: deprecate table cleanup log

fix(queries): replace invalid BioGRID-Ensembl join in web shell URL

fix(queries): replace invalid BioGRID-Ensembl join with correct summary query

fix(queries): update stale table names in web shell URL

fix(queries): update stale table references for session 16 renames

chore(lakes): sync omicslakehouse catalog

feat: add MSigDB, BioGRID, CARDAMOM regulation models; rename GSE79578 to lowercase; purge orphans

chore: commit SQLMesh state from full validation run

chore: sqlmesh janitor cleanup of stale snapshot versions

fix: remove orphaned ducklake_delete_file entries causing IOException

chore: remove superseded gene_mapping SQLMesh snapshot tables

chore: remove dead metadata from DuckLake catalog

chore: clean DuckLake catalog of deprecated schemas

chore: remove v0.3 DuckLake orphan files from datasets/

feat(lakes): apply enriched audit declarations to prod catalog

feat(datasets): apply enriched audit declarations to prod data

chore(lakes): remove unused v04 catalog

chore(queries): link to main catalog updated to v0.4

chore(omicslakehouse): v0.3 -> v0.4

chore(janitor): clean sqlmesh artifacts

chore(queries): add README.md

chore(lakes): fix v0.4 data path

chore(lakes): fix v0.4 data path

chore(lakes): add ducklake v0.4 duckdb v1.5 compatible catalog

fix: use materialized column names for panglaodb_markers in example queries

chore: add _schema_tmp pattern to .gitignore for SQLMesh temp directories

refactor: remove legacy DuckLake catalogs superseded by DuckDB-format catalog

refactor: remove manually-curated datasets superseded by SQLMesh-managed data product

refactor: remove legacy catalog creation scripts superseded by SQLMesh pipeline

refactor: remove legacy query files superseded by example-queries.sql and SQLMesh

feat: create consumer-facing example query script for omicslakehouse data product

feat: update SQLMesh state for DuckDB catalog materialization

feat: add DuckDB-format DuckLake catalog for remote access

chore: gitignore SQLMesh/DuckLake temp directories

feat: add DuckDB LFS tracking to .gitattributes

feat: update DuckLake catalog after audit declaration sync

feat: add SQLMesh state parquet files from audit metadata sync

feat: materialize SQLMesh-managed data product (19 models, SQLite DuckLake catalog)

feat: create empty datasets directory for SQLMesh output

feat: add .gitignore for working files

feat: add sqlite LFS tracking to .gitattributes

refactor: move manually-curated datasets to datasets_manual

fix(omicslakehouse): add ducklake v0.4

refactor(sql): update tier2 verification queries for renamed Ventre table

refactor(sql): update register-tier2 script for consolidated Semrau paths

feat(ducklake): register data files for consolidated Semrau regulation tables

refactor: consolidate Semrau regulation references into shared directory

feat(ducklake): register cardamom_semrau_mesc_regulation in reference schema

feat: add CARDAMOM Semrau mESC regulation reference table

fix(catalog): re-register gene_mapping tables at new paths