Update dataset card and file table

README.md

@@ -3,29 +3,33 @@ license: other
 license_name: sdrbench
 license_link: https://sdrbench.github.io/
 pretty_name: "SDRBench: CESM-ATM"
-viewer: false
 tags:
 - scientific-data
 - lossy-compression
 - sdrbench
 - hpc
 - sz3
+configs:
+- config_name: files
+  data_files: files.jsonl
+  default: true
 ---
 
 # SDRBench — CESM-ATM
 
-Climate simulation (Community Earth System Model, atmosphere component). 79 2D fields of 1800x3600, plus one 3D field of 26x1800x3600; single precision. The 'cleared' variant zeroes all background data.
+Climate simulation with the Community Earth System Model (CESM), atmosphere component (CAM). Single precision.
 
-This repository is an **unmodified mirror** of the CESM-ATM dataset from
-[SDRBench](https://sdrbench.github.io/datasets.html), the Scientific Data Reduction Benchmark. The originals are hosted by
-Argonne National Laboratory on Globus; every archive was unpacked and its files uploaded
-byte-for-byte (sha256 verified). `metadata/` holds the original SDRBench property and template
-files. The mirror is kept in sync automatically by
+> **Raw binary arrays, not an Arrow/Parquet dataset.** `datasets.load_dataset("sdrbench/cesm-atm")` returns the table of files (`files.jsonl`: path, dtype, shape, sha256). Read the arrays with the `sdrbench` package or `hf_hub_download` + numpy as shown below.
+
+This repository is an **unmodified mirror** of the CESM-ATM data of [SDRBench](https://sdrbench.github.io/datasets.html), the
+Scientific Data Reduction Benchmark. The originals are hosted by Argonne National Laboratory on Globus;
+every archive was unpacked and its files uploaded byte-for-byte (sha256 verified) (revision `cb3cd3aef0`). `metadata/` holds
+the original SDRBench property and template files. Kept in sync automatically by
 [szcompressor/sdrbench](https://github.com/szcompressor/sdrbench).
 
-- **Data source:** Mark Taylor (SNL)
-- **Total size:** 26.3 GB
-- **Format:** raw little-endian binary, C order (slowest dimension first)
+- **Data provider:** Mark Taylor (SNL)
+- **Size:** 26.3 GB in 3 variant(s)
+- **Format:** raw little-endian binary, C order (slowest dimension first); dtype and shape per field below
 
 ## Usage
 
@@ -38,7 +42,7 @@ import numpy as np
 import sdrbench
 from pysz import sz, szConfig, szErrorBoundMode
 
-ds = sdrbench.dataset("cesm-atm")         # default variant: 2d
+ds = sdrbench.dataset("cesm-atm")                # default variant "2d"
 print(ds.fields)
 x = ds["AEROD_v"]                     # numpy array, dtype <f4, shape (1800, 3600)
 
@@ -52,26 +56,27 @@ max_err, psnr, nrmse = sz.verify(np.asarray(x), y)
 print(f"ratio {ratio:.1f}x, PSNR {psnr:.1f} dB, max error {max_err:.3g}")
 ```
 
-Other variants: `sdrbench.dataset("cesm-atm", "2d-cleared")` (all: `2d-cleared`, `3d`).
-
-Files are downloaded on first use and cached; if Hugging Face is unreachable the package falls
-back to the original archive on Globus.
+Files are fetched on first use (in parallel with `ds.download("data/")`) and cached, pinned to the revision
+of the installed `sdrbench` release; if Hugging Face is unreachable the package falls back to the original
+archive on Globus. Existing local SDRBench copies can be used with `sdrbench.dataset("cesm-atm", root="/path")`.
 
-Without the package, any file can be read with `huggingface_hub` and numpy:
+Without the package, with `huggingface_hub` and numpy only:
 
 ```python
 from huggingface_hub import hf_hub_download
 import numpy as np
-p = hf_hub_download("sdrbench/cesm-atm", "1800x3600/AEROD_v_1_1800_3600.f32", repo_type="dataset")
+p = hf_hub_download("sdrbench/cesm-atm", "1800x3600/AEROD_v_1_1800_3600.f32", repo_type="dataset", revision="cb3cd3aef008d4834903dc7aaba24207ca6876a8")
 x = np.fromfile(p, dtype="<f4").reshape((1800, 3600))
 ```
 
-## Contents
+## Variants and fields
 
 
 ### `2d` (default)
 
-79 files, 2.0 GB, from [SDRBENCH-CESM-ATM-1800x3600.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/CESM-ATM/SDRBENCH-CESM-ATM-1800x3600.tar.gz).
+`sdrbench.dataset("cesm-atm", "2d")` — folder `1800x3600/` — 79 files, 2.0 GB, from [SDRBENCH-CESM-ATM-1800x3600.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/CESM-ATM/SDRBENCH-CESM-ATM-1800x3600.tar.gz).
+
+2D fields of one time step on a 1800 x 3600 latitude-longitude grid.
 
 | Field | dtype | Shape (C order) | File |
 |---|---|---|---|
@@ -85,13 +90,13 @@ x = np.fromfile(p, dtype="<f4").reshape((1800, 3600))
 | `FLNSC` | `<f4` | 1800 x 3600 | `1800x3600/FLNSC_1_1800_3600.f32` |
 | `FLNS` | `<f4` | 1800 x 3600 | `1800x3600/FLNS_1_1800_3600.f32` |
 | `FLNTC` | `<f4` | 1800 x 3600 | `1800x3600/FLNTC_1_1800_3600.f32` |
-| `FLNT` | `<f4` | 1800 x 3600 | `1800x3600/FLNT_1_1800_3600.f32` |
-| `FLUTC` | `<f4` | 1800 x 3600 | `1800x3600/FLUTC_1_1800_3600.f32` |
-| ... 67 more | | | |
+| ... 69 more | | | |
 
 ### `2d-cleared`
 
-78 files, 2.0 GB, from [SDRBENCH-CESM-ATM-cleared-1800x3600.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/CESM-ATM/SDRBENCH-CESM-ATM-cleared-1800x3600.tar.gz).
+`sdrbench.dataset("cesm-atm", "2d-cleared")` — folder `cleared-1800x3600/` — 78 files, 2.0 GB, from [SDRBENCH-CESM-ATM-cleared-1800x3600.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/CESM-ATM/SDRBENCH-CESM-ATM-cleared-1800x3600.tar.gz).
+
+The 2D fields with all background (fill) values set to 0.
 
 | Field | dtype | Shape (C order) | File |
 |---|---|---|---|
@@ -105,15 +110,15 @@ x = np.fromfile(p, dtype="<f4").reshape((1800, 3600))
 | `FLNSC` | `<f4` | 1800 x 3600 | `cleared-1800x3600/FLNSC_1_1800_3600.dat` |
 | `FLNS` | `<f4` | 1800 x 3600 | `cleared-1800x3600/FLNS_1_1800_3600.dat` |
 | `FLNTC` | `<f4` | 1800 x 3600 | `cleared-1800x3600/FLNTC_1_1800_3600.dat` |
-| `FLNT` | `<f4` | 1800 x 3600 | `cleared-1800x3600/FLNT_1_1800_3600.dat` |
-| `FLUTC` | `<f4` | 1800 x 3600 | `cleared-1800x3600/FLUTC_1_1800_3600.dat` |
-| ... 65 more | | | |
+| ... 67 more | | | |
 
 Other files: `cleared-1800x3600/readme.txt`
 
 ### `3d`
 
-33 files, 22.2 GB, from [SDRBENCH-CESM-ATM-26x1800x3600.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/CESM-ATM/SDRBENCH-CESM-ATM-26x1800x3600.tar.gz).
+`sdrbench.dataset("cesm-atm", "3d")` — folder `26x1800x3600/` — 33 files, 22.2 GB, from [SDRBENCH-CESM-ATM-26x1800x3600.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/CESM-ATM/SDRBENCH-CESM-ATM-26x1800x3600.tar.gz).
+
+3D fields: 26 vertical levels of 1800 x 3600.
 
 | Field | dtype | Shape (C order) | File |
 |---|---|---|---|
@@ -127,13 +132,11 @@ Other files: `cleared-1800x3600/readme.txt`
 | `DCQ` | `<f4` | 26 x 1800 x 3600 | `26x1800x3600/DCQ_1_26_1800_3600.f32` |
 | `DTCOND` | `<f4` | 26 x 1800 x 3600 | `26x1800x3600/DTCOND_1_26_1800_3600.f32` |
 | `DTV` | `<f4` | 26 x 1800 x 3600 | `26x1800x3600/DTV_1_26_1800_3600.f32` |
-| `FICE` | `<f4` | 26 x 1800 x 3600 | `26x1800x3600/FICE_1_26_1800_3600.f32` |
-| `GCLDLWP` | `<f4` | 26 x 1800 x 3600 | `26x1800x3600/GCLDLWP_1_26_1800_3600.f32` |
-| ... 21 more | | | |
+| ... 23 more | | | |
 
 ## Citation
 
-If you use this dataset, please cite SDRBench:
+Please cite SDRBench; `sdrbench cite cesm-atm` prints it:
 
 ```bibtex
 @inproceedings{zhao2020sdrbench,
@@ -147,5 +150,6 @@ If you use this dataset, please cite SDRBench:
 
 ## License and terms
 
-The data are distributed under the same terms as on the [SDRBench website](https://sdrbench.github.io/datasets.html).
-Rights remain with the original data providers listed above.
+The data are distributed by the SDRBench team for research use under the terms of the original
+data providers listed above (see the [SDRBench website](https://sdrbench.github.io/datasets.html)); please acknowledge them as
+requested. Rights remain with the data providers.

files.jsonl

@@ -0,0 +1,190 @@
+{"variant": "2d", "field": "AEROD_v", "var": "AEROD_v", "step": null, "path": "1800x3600/AEROD_v_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "472f169e668049fa46b69698d8a47ce7d74c557e830344fced47b55c0a3829a4"}
+{"variant": "2d", "field": "CLDHGH", "var": "CLDHGH", "step": null, "path": "1800x3600/CLDHGH_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "2f05bb17391c00a6d5948ef062537fafd44b27fc09e47c06c3f0112718be65d8"}
+{"variant": "2d", "field": "CLDLOW", "var": "CLDLOW", "step": null, "path": "1800x3600/CLDLOW_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "289f9196036e93e129b9c142444c225065740a783ec76877fc2d5b9fa13d0a3e"}
+{"variant": "2d", "field": "CLDMED", "var": "CLDMED", "step": null, "path": "1800x3600/CLDMED_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "66b5d22ff38de01c89fa19e4d71039dbfc0ad92ae8b29bdbd35e8bf7c0cced3f"}
+{"variant": "2d", "field": "CLDTOT", "var": "CLDTOT", "step": null, "path": "1800x3600/CLDTOT_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "63642765eacdd0c7d9f9761c8fb074b37b08ce93e8b71c76cce5e084fc1131e3"}
+{"variant": "2d", "field": "FLDSC", "var": "FLDSC", "step": null, "path": "1800x3600/FLDSC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "78df3f45a1609910a452b9791a6a338ef7335ffe3d2af67849ce2095cf307927"}
+{"variant": "2d", "field": "FLDS", "var": "FLDS", "step": null, "path": "1800x3600/FLDS_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "8b3125216af7f60fb90d9ae38bdd9bc36b56fd7cf7efe79e0775bfe0aa3b9c97"}
+{"variant": "2d", "field": "FLNSC", "var": "FLNSC", "step": null, "path": "1800x3600/FLNSC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "e240d0f22e69a44dcfee642951e6926f025639865484a3ec108cdf2bacb6f68e"}
+{"variant": "2d", "field": "FLNS", "var": "FLNS", "step": null, "path": "1800x3600/FLNS_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "0a683d1c2f04e5e0484a8e7871391436986c638dd7ee0f6983eb6ae6fd834430"}
+{"variant": "2d", "field": "FLNTC", "var": "FLNTC", "step": null, "path": "1800x3600/FLNTC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "efd91bc78ae04db0a5712853e878cf8a7f12bafddd1fbca2e33f1aa0c4a561e6"}
+{"variant": "2d", "field": "FLNT", "var": "FLNT", "step": null, "path": "1800x3600/FLNT_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "4c283426c3c38bdd26107d4a531a7ef2472db10af7c5ded98524880ee83d9865"}
+{"variant": "2d", "field": "FLUTC", "var": "FLUTC", "step": null, "path": "1800x3600/FLUTC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "9e2fffcee69476180afd31b5454d65334b5c2aaf2266f9c951a237950f28c74d"}
+{"variant": "2d", "field": "FLUT", "var": "FLUT", "step": null, "path": "1800x3600/FLUT_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "ae23d14b411dd85db6a02d8846f1b436a2a9f679b48a603d4180fe2ee967ce5d"}
+{"variant": "2d", "field": "FREQSH", "var": "FREQSH", "step": null, "path": "1800x3600/FREQSH_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "2e3e95da67197a7f154186397abf9854a6bf62b2f7f534319cd3428834846bbb"}
+{"variant": "2d", "field": "FREQZM", "var": "FREQZM", "step": null, "path": "1800x3600/FREQZM_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "679d2772ba3bbe9221083896887cf1bab701a7cb4df806d8ce53320be719a38d"}
+{"variant": "2d", "field": "FSDSC", "var": "FSDSC", "step": null, "path": "1800x3600/FSDSC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "3023650f3261f442f59fd33fc9eb8eb7ccb2b1914fca01794f8eee3937dae06f"}
+{"variant": "2d", "field": "FSDS", "var": "FSDS", "step": null, "path": "1800x3600/FSDS_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "4b89af52db1a06f17de49275c4520374ad48385f5e95c7c1ad1060aed02b494d"}
+{"variant": "2d", "field": "FSDTOA", "var": "FSDTOA", "step": null, "path": "1800x3600/FSDTOA_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "13b6d8e0fce292e18d80ef46a48b9b9f1f4902d9fa3538431c3518270a2796b4"}
+{"variant": "2d", "field": "FSNSC", "var": "FSNSC", "step": null, "path": "1800x3600/FSNSC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "fa93c97cb3267ee2c42d2307763dd55eb8279715b835cd79494188d202a9de04"}
+{"variant": "2d", "field": "FSNS", "var": "FSNS", "step": null, "path": "1800x3600/FSNS_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "114f9b8aec31768e480571f07cada05379c80dc7f8e437df1feea1e5a6b2d63d"}
+{"variant": "2d", "field": "FSNTC", "var": "FSNTC", "step": null, "path": "1800x3600/FSNTC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "76c232b3d01c48752c1d4e701bd900cab15b348fb0812018a266f7d53b33155f"}
+{"variant": "2d", "field": "FSNTOAC", "var": "FSNTOAC", "step": null, "path": "1800x3600/FSNTOAC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "2c001352ea9622689fd0df4c10a0795a2120a0fb210ffd0eafdc4a97149b79f5"}
+{"variant": "2d", "field": "FSNTOA", "var": "FSNTOA", "step": null, "path": "1800x3600/FSNTOA_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "ca6fa4c63334f76ef1e5704c98b0c8a597e3bb319ac479e3baf89d786dab420c"}
+{"variant": "2d", "field": "FSNT", "var": "FSNT", "step": null, "path": "1800x3600/FSNT_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "3ecc5ddf559d1ccd97617ca2baa95230d24598063f84ad698b14eeaa3fad870b"}
+{"variant": "2d", "field": "FSUTOA", "var": "FSUTOA", "step": null, "path": "1800x3600/FSUTOA_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "1eadd633d2a3511dde4a34fc98b4cd13d8e39f36007a634b82fc4c29690909d6"}
+{"variant": "2d", "field": "ICEFRAC", "var": "ICEFRAC", "step": null, "path": "1800x3600/ICEFRAC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "67559bf9472231982cc6e1082f3a63972b357c8c876da304ec7c8c2ca370ad52"}
+{"variant": "2d", "field": "LANDFRAC", "var": "LANDFRAC", "step": null, "path": "1800x3600/LANDFRAC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "5a3246be29bcb8dd0c5b50a6eacce00305b1190405b4e8b860731a30c9cb47f8"}
+{"variant": "2d", "field": "LHFLX", "var": "LHFLX", "step": null, "path": "1800x3600/LHFLX_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "ae648f7a56b40f45a98f558e7ab3b118ad1b3a23001106ab44728f1f971f0233"}
+{"variant": "2d", "field": "LWCF", "var": "LWCF", "step": null, "path": "1800x3600/LWCF_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "7909d892b8fbff0102b893f03afd0ea590cd59831f0e89b5508aed5b7504288c"}
+{"variant": "2d", "field": "OCNFRAC", "var": "OCNFRAC", "step": null, "path": "1800x3600/OCNFRAC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "6937088b3d6eeac4ae2e0bf711f5b492b8de192394959ec9477f7bcca5349df9"}
+{"variant": "2d", "field": "ODV_SSLTA", "var": "ODV_SSLTA", "step": null, "path": "1800x3600/ODV_SSLTA_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "8cb076dac8fdeed1fe1abe20c6ca53359375fc46d84c35001f8e97a7abfaf64b"}
+{"variant": "2d", "field": "ODV_SSLTC", "var": "ODV_SSLTC", "step": null, "path": "1800x3600/ODV_SSLTC_1_1800_3600.f32", "dtype": "<f4", "shape": [1800, 3600], "file_shape": [1800, 3600], "component": null, "transpose": null, "bytes": 25920000, "sha256": "0c766dc5ebb3ea4c507bd05a9548b6b21d9a9799985e09e8e3cb0e13c8291e4c"}
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