ayzk commited on
Commit
fba0d38
·
verified ·
1 Parent(s): 10d23e9

Update dataset card

Browse files
Files changed (1) hide show
  1. README.md +126 -0
README.md ADDED
@@ -0,0 +1,126 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: other
3
+ license_name: sdrbench
4
+ license_link: https://sdrbench.github.io/
5
+ pretty_name: "SDRBench: SCALE-LETKF"
6
+ tags:
7
+ - scientific-data
8
+ - lossy-compression
9
+ - sdrbench
10
+ - hpc
11
+ - sz3
12
+ ---
13
+
14
+ # SDRBench — SCALE-LETKF
15
+
16
+ Weather/climate simulation from the Local Ensemble Transform Kalman Filter (LETKF) data assimilation package for the SCALE-RM model. 13 fields of 98x1200x1200, single precision, little-endian; the _log variant holds log-transformed fields.
17
+
18
+ This repository is an **unmodified mirror** of the SCALE-LETKF dataset from
19
+ [SDRBench](https://sdrbench.github.io/datasets.html), the Scientific Data Reduction Benchmark. The originals are hosted by
20
+ Argonne National Laboratory on Globus; every archive was unpacked and its files uploaded
21
+ byte-for-byte (sha256 verified). `metadata/` holds the original SDRBench property and template
22
+ files. The mirror is kept in sync automatically by
23
+ [szcompressor/sdrbench](https://github.com/szcompressor/sdrbench).
24
+
25
+ - **Data source:** RIKEN; contact Guo-Yuan Lien (guoyuan.lien@gmail.com)
26
+ - **Total size:** 13.5 GB
27
+ - **Format:** raw little-endian binary, C order (slowest dimension first)
28
+
29
+ ## Usage
30
+
31
+ ```bash
32
+ pip install "sdrbench[sz3]" # sdrbench + pysz (SZ3)
33
+ ```
34
+
35
+ ```python
36
+ import numpy as np
37
+ import sdrbench
38
+ from pysz import sz, szConfig, szErrorBoundMode
39
+
40
+ ds = sdrbench.dataset("scale-letkf") # default variant: 98x1200x1200
41
+ print(ds.fields)
42
+ x = ds["PRES"] # numpy array, dtype <f4, shape (98, 1200, 1200)
43
+
44
+ # compress with SZ3 (pysz) at a 1e-3 value-range-relative error bound
45
+ conf = szConfig()
46
+ conf.errorBoundMode = szErrorBoundMode.REL
47
+ conf.relErrorBound = 1e-3
48
+ compressed, ratio = sz.compress(np.ascontiguousarray(x), conf)
49
+ y, _ = sz.decompress(compressed, x.dtype.type, x.shape)
50
+ max_err, psnr, nrmse = sz.verify(np.asarray(x), y)
51
+ print(f"ratio {ratio:.1f}x, PSNR {psnr:.1f} dB, max error {max_err:.3g}")
52
+ ```
53
+
54
+ Other variants: `sdrbench.dataset("scale-letkf", "98x1200x1200_log")`.
55
+
56
+ Files are downloaded on first use and cached; if Hugging Face is unreachable the package falls
57
+ back to the original archive on Globus.
58
+
59
+ Without the package, any file can be read with `huggingface_hub` and numpy:
60
+
61
+ ```python
62
+ from huggingface_hub import hf_hub_download
63
+ import numpy as np
64
+ p = hf_hub_download("sdrbench/scale-letkf", "98x1200x1200/PRES-98x1200x1200.f32", repo_type="dataset")
65
+ x = np.fromfile(p, dtype="<f4").reshape((98, 1200, 1200))
66
+ ```
67
+
68
+ ## Contents
69
+
70
+
71
+ ### `98x1200x1200` (default)
72
+
73
+ 12 files, 6.8 GB, from [SDRBENCH-SCALE-98x1200x1200.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/SCALE_LETKF/SDRBENCH-SCALE-98x1200x1200.tar.gz).
74
+
75
+ | Field | dtype | Shape (C order) | File |
76
+ |---|---|---|---|
77
+ | `PRES` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/PRES-98x1200x1200.f32` |
78
+ | `QC` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/QC-98x1200x1200.f32` |
79
+ | `QG` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/QG-98x1200x1200.f32` |
80
+ | `QI` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/QI-98x1200x1200.f32` |
81
+ | `QR` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/QR-98x1200x1200.f32` |
82
+ | `QS` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/QS-98x1200x1200.f32` |
83
+ | `QV` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/QV-98x1200x1200.f32` |
84
+ | `RH` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/RH-98x1200x1200.f32` |
85
+ | `T` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/T-98x1200x1200.f32` |
86
+ | `U` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/U-98x1200x1200.f32` |
87
+ | `V` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/V-98x1200x1200.f32` |
88
+ | `W` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200/W-98x1200x1200.f32` |
89
+
90
+ ### `98x1200x1200_log`
91
+
92
+ 12 files, 6.8 GB, from [SDRBENCH-SCALE-98x1200x1200_log.tar.gz](https://g-d0cd3f.fd635.8443.data.globus.org/raw-data/SCALE_LETKF/SDRBENCH-SCALE-98x1200x1200_log.tar.gz).
93
+
94
+ | Field | dtype | Shape (C order) | File |
95
+ |---|---|---|---|
96
+ | `PRES` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/PRES-98x1200x1200.f32` |
97
+ | `QC.log10` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/QC-98x1200x1200.log10.f32` |
98
+ | `QG.log10` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/QG-98x1200x1200.log10.f32` |
99
+ | `QI.log10` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/QI-98x1200x1200.log10.f32` |
100
+ | `QR.log10` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/QR-98x1200x1200.log10.f32` |
101
+ | `QS.log10` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/QS-98x1200x1200.log10.f32` |
102
+ | `QV.log10` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/QV-98x1200x1200.log10.f32` |
103
+ | `RH` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/RH-98x1200x1200.f32` |
104
+ | `T` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/T-98x1200x1200.f32` |
105
+ | `U` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/U-98x1200x1200.f32` |
106
+ | `V` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/V-98x1200x1200.f32` |
107
+ | `W` | `<f4` | 98 x 1200 x 1200 | `98x1200x1200_log/W-98x1200x1200.f32` |
108
+
109
+ ## Citation
110
+
111
+ If you use this dataset, please cite SDRBench:
112
+
113
+ ```bibtex
114
+ @inproceedings{zhao2020sdrbench,
115
+ title = {{SDRBench}: Scientific Data Reduction Benchmark for Lossy Compressors},
116
+ author = {Zhao, Kai and Di, Sheng and Liang, Xin and Li, Sihuan and Tao, Dingwen and Chen, Zizhong and Cappello, Franck},
117
+ booktitle = {2020 IEEE International Conference on Big Data (Big Data)},
118
+ pages = {2716--2724},
119
+ year = {2020}
120
+ }
121
+ ```
122
+
123
+ ## License and terms
124
+
125
+ The data are distributed under the same terms as on the [SDRBench website](https://sdrbench.github.io/datasets.html).
126
+ Rights remain with the original data providers listed above.