omicidx / views.sql
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OmicIDX release 2026-11 (v2026-11-02)
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CREATE SCHEMA IF NOT EXISTS geometadb;
CREATE SCHEMA IF NOT EXISTS sradb;
CREATE OR REPLACE VIEW bioprojects AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/bioprojects.parquet');
CREATE OR REPLACE VIEW biosamples AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/biosamples.parquet');
CREATE OR REPLACE VIEW ebi_biosamples AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/ebi_biosamples.parquet');
CREATE OR REPLACE VIEW geo_platforms AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geo_platforms.parquet');
CREATE OR REPLACE VIEW geo_samples AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geo_samples.parquet');
CREATE OR REPLACE VIEW geo_series AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geo_series.parquet');
CREATE OR REPLACE VIEW geo_series_with_rnaseq_counts AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geo_series_with_rnaseq_counts.parquet');
CREATE OR REPLACE VIEW geometadb.geo_supplemental_files AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geometadb/geo_supplemental_files.parquet');
CREATE OR REPLACE VIEW geometadb.gpl AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geometadb/gpl.parquet');
CREATE OR REPLACE VIEW geometadb.gse AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geometadb/gse.parquet');
CREATE OR REPLACE VIEW geometadb.gse_gpl AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geometadb/gse_gpl.parquet');
CREATE OR REPLACE VIEW geometadb.gse_gsm AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geometadb/gse_gsm.parquet');
CREATE OR REPLACE VIEW geometadb.gsm AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/geometadb/gsm.parquet');
CREATE OR REPLACE VIEW sra_accessions AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sra_accessions.parquet');
CREATE OR REPLACE VIEW sra_experiments AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sra_experiments.parquet');
CREATE OR REPLACE VIEW sra_runs AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sra_runs.parquet');
CREATE OR REPLACE VIEW sra_samples AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sra_samples.parquet');
CREATE OR REPLACE VIEW sra_studies AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sra_studies.parquet');
CREATE OR REPLACE VIEW sradb.experiment AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/experiment.parquet');
CREATE OR REPLACE VIEW sradb.human_runs AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/human_runs.parquet');
CREATE OR REPLACE VIEW sradb.mouse_runs AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/mouse_runs.parquet');
CREATE OR REPLACE VIEW sradb.rnaseq_runs AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/rnaseq_runs.parquet');
CREATE OR REPLACE VIEW sradb.run AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/run.parquet');
CREATE OR REPLACE VIEW sradb.run_with_study AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/run_with_study.parquet');
CREATE OR REPLACE VIEW sradb.sample AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/sample.parquet');
CREATE OR REPLACE VIEW sradb.sra AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/sra.parquet');
CREATE OR REPLACE VIEW sradb.study AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/study.parquet');
CREATE OR REPLACE VIEW sradb.wgs_runs AS SELECT * FROM read_parquet('hf://datasets/seandavis/omicidx@2026-11/sradb/wgs_runs.parquet');