{ "base_registry_unique": 19999982, "base_seen_lmdb": "/scratch/shai/data_20m_selfies_original_cartesian_shards/selfies_seen.lmdb", "conformers_per_molecule": 10, "coordinate_contract": "coordinates[:, i, :] matches atom i after SELFIES decode and RDKit parse", "coordinate_space": "original RDKit Cartesian coordinates; atom-axis permutation only", "discarded_after_split_filled": 0, "duplicate_selfies_in_base_rejected": 23, "duplicate_selfies_in_shard_rejected": 68, "elapsed_seconds": 84522.61968636513, "finished_at_epoch": 1787110423.9621181, "local_registry_unique": 20000000, "molecular_property_contract": { "calculated_from": "canonical heavy-atom molecule represented by smi; standard implicit hydrogens are included by RDKit", "molecular_weight_kind": "average molecular weight, not exact isotope mass", "rdkit_version": "2025.03.6", "sa_score_implementation": "RDKit Contrib SA_Score/sascorer.py" }, "partition_count": 5, "partition_index": 1, "partition_rejected": 79990241, "raw_slices": [ 2, 3, 4, 5, 1 ], "record_format": { "atoms": "heavy-atom symbols in decoded SELFIES atom order", "coordinates": "float32 ndarray, shape (10, n_heavy, 3)", "mol_log_p": "float; RDKit Crippen.MolLogP", "molecular_weight": "float; RDKit Descriptors.MolWt", "qed": "float; RDKit QED.qed", "sa_score": "float; RDKit Contrib SA_Score; 1 is easiest and 10 is hardest", "smi": "SELFIES encoding of canonical isomeric heavy-atom SMILES", "tpsa": "float; RDKit rdMolDescriptors.CalcTPSA" }, "skipped_by_reason": { "coordinates_shape": 77717, "disconnected_heavy_graph": 1 }, "source_file_error_samples": [], "source_file_errors": {}, "source_processed": { "raw_zinc": 100068096 }, "source_written": { "raw_zinc": 20000000 }, "split": "all accepted records assigned to train", "started_at_epoch": 1787025901.3424318, "total_examples": 20000000, "train_examples": 20000000, "val_examples": 0, "validation": { "selfies_roundtrip_every": 10000, "smoke_test": false }, "workers": 192 }