iterative_alignment_experiment_structure/submit_updating.sh

#!/bin/bash
#SBATCH -N 1
#SBATCH -G 4
#SBATCH -C gpu&hbm80g
#SBATCH -q regular
#SBATCH -t 01:00:00
#SBATCH -A m4235
#SBATCH -J sampling

source /global/u2/s/si264/mambaforge/etc/profile.d/conda.sh
conda activate proera

# Define the directory containing subdirectories
target="TrpB4"  # Replace with your actual target string if needed
BASE_DIR="./$target/lightning_logs"

# Get a sorted list of subdirectories
subdirs=($(ls -d "$BASE_DIR"/*/ | sort))

replicates=(0 1 2 3 4 5 6 7 8 9)

# Run the script 10 times
for i in {0..9}; do
    # Extract the version number (subdirectory name)
    version_number=$(basename "${subdirs[$i]}")

    replicate="${replicates[$i]}"

    # Run the Python script with the specified arguments
    python compute_updated_logps.py \
        --target $target \
        --num_samples 96 \
        --alignment_round 2 \
        --version_number "$version_number" \
        --replicate "$replicate"
done