KG Matched Cluster Comparison — GNN vs GNN-beta (k=10, subset 085)

Each row is an optimally matched cluster pair (Hungarian algorithm on the 10×10 overlap matrix).
Δ columns: B − A ■ green = B > A ■ red = B < A
Row shading: high overlap ≥40% low overlap <5%

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Graph Structure

GNN Cluster	GNN-beta Cluster	Overlap	Overlap %	Size A	Size B	Nodes A	Nodes B	Δ Nodes	Edges A	Edges B	Density A	Density B	Deg A	Deg B	Δ Deg	Clust A	Clust B
A0	B2	132	26.100	464	506	464.0	506.0	42.0	326,401.0	397,151.0	0.9993	0.9999	462.7	504.9	42.3	0.9993	0.9999
A1	B1	215	31.900	499	673	499.0	673.0	174.0	315,766.0	612,717.0	0.9961	0.9996	496.1	671.7	175.7	0.9968	0.9996
A2	B4	130	31.700	410	172	410.0	172.0	-238.0	102,281.0	17,116.0	0.8272	0.8335	338.3	142.5	-195.8	0.9084	0.9401
A3	B6	208	25.300	423	822	423.0	822.0	399.0	274,830.0	1,029,194.0	0.9994	0.9998	421.8	820.9	399.1	0.9995	0.9998
A4	B8	0	0.000	344	33	344.0	33.0	-311.0	166,495.0	560.0	0.9997	0.7292	342.9	23.3	-319.6	0.9997	0.8700
A5	B0	52	11.900	407	437	407.0	437.0	30.0	209,609.0	160,779.0	0.9880	0.9611	401.1	419.1	17.9	0.9895	0.9693
A6	B3	90	18.100	498	494	498.0	494.0	-4.0	308,389.0	341,900.0	0.9960	0.9989	495.0	492.5	-2.6	0.9965	0.9990
A7	B7	215	45.400	474	421	474.0	421.0	-53.0	219,614.0	189,549.0	0.9729	0.9996	460.2	419.8	-40.3	0.9796	0.9996
A8	B5	178	61.600	261	289	261.0	289.0	28.0	78,685.0	80,411.0	0.9826	0.9900	255.5	285.1	29.6	0.9903	0.9922
A9	B9	99	19.100	518	451	518.0	451.0	-67.0	410,390.0	271,046.0	0.9990	0.9993	516.5	449.7	-66.8	0.9990	0.9993

Knowledge Coverage (fraction of nodes with ≥1 edge of each type)

GNN	GNN-beta	Overlap %	gene_ove A	pubmed_c A	shared_m A	shared_p A	shared_d A	shared_g A	gene_ove B	pubmed_c B	shared_m B	shared_p B	shared_d B	shared_g B	Δ gene_ove	Δ pubmed_c	Δ shared_m	Δ shared_p	Δ shared_d	Δ shared_g
A0	B2	26.100	0.875	0.756	0.791	1.000	0.922	0.944	0.883	0.739	0.757	1.000	0.957	0.955	0.008	-0.017	-0.034	0.000	0.034	0.011
A1	B1	31.900	0.914	0.790	0.794	1.000	0.804	0.868	0.841	0.756	0.768	1.000	0.865	0.918	-0.073	-0.033	-0.025	0.000	0.061	0.051
A2	B4	31.700	0.954	0.568	0.671	0.883	0.424	0.544	0.849	0.349	0.576	0.878	0.442	0.401	-0.105	-0.219	-0.095	-0.005	0.017	-0.143
A3	B6	25.300	0.865	0.695	0.716	0.998	0.936	0.962	0.856	0.762	0.738	1.000	0.943	0.955	-0.009	0.067	0.022	0.002	0.007	-0.007
A4	B8	0.000	0.875	0.744	0.750	1.000	0.907	0.927	0.939	0.061	0.606	0.364	0.303	0.212	0.064	-0.684	-0.144	-0.636	-0.604	-0.715
A5	B0	11.900	0.912	0.708	0.752	1.000	0.830	0.848	0.911	0.787	0.796	0.986	0.558	0.670	-0.001	0.080	0.044	-0.014	-0.272	-0.177
A6	B3	18.100	0.900	0.729	0.719	0.998	0.857	0.890	1.000	0.765	0.737	0.998	0.897	0.903	0.100	0.036	0.018	-0.000	0.039	0.013
A7	B7	45.400	0.909	0.770	0.764	0.996	0.671	0.793	0.817	0.720	0.765	1.000	0.686	0.812	-0.092	-0.050	0.001	0.004	0.016	0.019
A8	B5	61.600	0.985	0.552	0.762	1.000	0.931	0.253	0.166	0.457	0.751	0.990	0.799	0.280	-0.819	-0.095	-0.012	-0.010	-0.132	0.027
A9	B9	19.100	0.900	0.751	0.763	1.000	0.940	0.983	0.874	0.761	0.761	1.000	0.874	0.936	-0.026	0.010	-0.002	0.000	-0.067	-0.047

Generated by KnowledgeGraph/kg_matched_comparison.py