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  1. results_new/correlation_comparison.csv +6 -6
  2. results_new/drift_merged_diffae.csv +15 -15
  3. results_new/drift_merged_diffae_lag2.csv +15 -15
  4. results_new/drift_merged_tvae.csv +15 -15
  5. results_new/drift_merged_tvae_lag2.csv +15 -15
  6. results_new/drift_merged_vae.csv +15 -15
  7. results_new/drift_merged_vae_lag2.csv +15 -15
  8. results_new/drift_scores_diffae_h1n1.csv +17 -17
  9. results_new/drift_scores_diffae_h1n1_lag2.csv +16 -16
  10. results_new/drift_scores_diffae_h3n2.csv +17 -17
  11. results_new/drift_scores_diffae_h3n2_lag2.csv +16 -16
  12. results_new/drift_scores_tvae_h1n1.csv +17 -17
  13. results_new/drift_scores_tvae_h1n1_lag2.csv +16 -16
  14. results_new/drift_scores_tvae_h3n2.csv +17 -17
  15. results_new/drift_scores_tvae_h3n2_lag2.csv +16 -16
  16. results_new/drift_scores_vae_h1n1.csv +17 -17
  17. results_new/drift_scores_vae_h1n1_lag2.csv +16 -16
  18. results_new/drift_scores_vae_h3n2.csv +17 -17
  19. results_new/drift_scores_vae_h3n2_lag2.csv +16 -16
  20. results_new/full_model_comparison.csv +15 -15
  21. results_new/latent_diversity_diffae_h3n2.csv +12 -12
  22. results_new/latent_diversity_tvae_h3n2.csv +18 -18
  23. results_new/latent_diversity_vae_h3n2.csv +12 -12
  24. results_new/sirc_params_diffae.csv +8 -8
  25. results_new/sirc_params_diffae_combined.csv +7 -7
  26. results_new/sirc_params_diffae_lag2.csv +7 -7
  27. results_new/sirc_params_tvae.csv +8 -8
  28. results_new/sirc_params_vae.csv +8 -8
  29. results_new/sirc_simulation_diffae.csv +13 -13
  30. results_new/sirc_simulation_diffae_combined.csv +13 -13
  31. results_new/sirc_simulation_diffae_lag2.csv +13 -13
  32. results_new/sirc_simulation_tvae.csv +13 -13
  33. results_new/sirc_simulation_vae.csv +13 -13
results_new/correlation_comparison.csv CHANGED
@@ -1,10 +1,10 @@
1
  Metric,rho,p,CI_lo,CI_hi,n,CI
2
- DiffAE lag-1 (blended),0.38551827275025324,0.15585899037368892,-0.16386050129229068,0.7589931501658211,15,"[-0.16, 0.76]"
3
- DiffAE lag-2 (blended),0.3818813079129867,0.16013360492815723,-0.18514376606126362,0.840433981224313,15,"[-0.19, 0.84]"
4
- VAE lag-1 (blended),0.3927922024247863,0.14753955763888887,-0.1637729838026484,0.7556708662049411,15,"[-0.16, 0.76]"
5
- VAE lag-2 (blended),0.4037030969365859,0.13562827630878244,-0.17109575303805602,0.8437232950191448,15,"[-0.17, 0.84]"
6
- TVAE lag-1 (blended),0.49099025303098287,0.0630989066582577,-0.046989258091308675,0.8380416712690478,15,"[-0.05, 0.84]"
7
- TVAE lag-2 (blended),0.46553149917011705,0.08032984536217488,-0.06803267873382532,0.8839678548206559,15,"[-0.07, 0.88]"
8
  Hamming H3N2 lag-1,0.007405376032788813,0.9791035961351728,-0.5507549288055146,0.5589298744299823,15,"[-0.55, 0.56]"
9
  Hamming H3N2 lag-2,0.033958905427861195,0.9043678210462518,-0.5201586903828396,0.579691735485091,15,"[-0.52, 0.58]"
10
  H1N1 co-circulation,0.13939393939393938,0.7009318849100584,-0.7583165363218578,0.8313772647105978,10,"[-0.76, 0.83]"
 
1
  Metric,rho,p,CI_lo,CI_hi,n,CI
2
+ DiffAE lag-1 (blended),0.4509836398210509,0.09156012139132494,-0.08230678312025709,0.78657442768004,15,"[-0.08, 0.79]"
3
+ DiffAE lag-2 (blended),0.4255248859601851,0.11380100835183467,-0.15675655456203463,0.8470255585702305,15,"[-0.16, 0.85]"
4
+ VAE lag-1 (blended),0.4364357804719848,0.10385510395975796,-0.06938106307033166,0.7790487408719494,15,"[-0.07, 0.78]"
5
+ VAE lag-2 (blended),0.3600595188893874,0.18741406766247667,-0.2067294244964042,0.81380181951844,15,"[-0.21, 0.81]"
6
+ TVAE lag-1 (blended),0.4473466749837844,0.09453231766224783,-0.10159838895824447,0.84109096824881,15,"[-0.10, 0.84]"
7
+ TVAE lag-2 (blended),0.2945941518185897,0.28648727436863436,-0.2973112417001159,0.7678557759194542,15,"[-0.30, 0.77]"
8
  Hamming H3N2 lag-1,0.007405376032788813,0.9791035961351728,-0.5507549288055146,0.5589298744299823,15,"[-0.55, 0.56]"
9
  Hamming H3N2 lag-2,0.033958905427861195,0.9043678210462518,-0.5201586903828396,0.579691735485091,15,"[-0.52, 0.58]"
10
  H1N1 co-circulation,0.13939393939393938,0.7009318849100584,-0.7583165363218578,0.8313772647105978,10,"[-0.76, 0.83]"
results_new/drift_merged_diffae.csv CHANGED
@@ -1,16 +1,16 @@
1
  season,pct_h1n1,pct_h3n2,hosp_rate_overall,covid_excluded,drift_h1n1,drift_h3n2,drift_h1n1_raw,drift_h3n2_raw,drift_blended
2
- 2010-11,,,21.5,False,0.0,0.0,0.019403398036956787,0.06124913692474365,0.0
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- 2011-12,,,8.7,False,0.3718109428882599,0.0,0.06576895713806152,0.016620218753814697,0.0
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- 2012-13,,,44.0,False,0.07695521414279938,1.0,0.02899986505508423,0.1659024953842163,0.0
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- 2013-14,,,35.1,False,0.5938134789466858,0.4628381133079529,0.09345310926437378,0.08571374416351318,0.0
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- 2014-15,,,64.1,False,1.0,0.6717933416366577,0.3268595337867737,0.11690706014633179,0.0
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- 2015-16,0.545,0.154,31.4,False,1.0,0.5515461564064026,0.5610330104827881,0.09895628690719604,0.629938108086586
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- 2016-17,0.024,0.744,62.0,False,0.011179001070559025,1.0,0.02545827627182007,0.17705434560775757,0.7442682960256934
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- 2017-18,0.11,0.597,102.9,False,0.28075674176216125,1.0,0.1714695692062378,0.325991153717041,0.6278832415938377
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- 2018-19,0.52,0.42,63.6,False,0.02334611304104328,1.0,0.03204834461212158,0.5921335220336914,0.43213997878134247
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- 2019-20,0.531,0.041,66.0,False,0.24206581711769104,1.0,0.1505134105682373,0.6195746064186096,0.16953694888949397
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- 2021-22,0.005,0.986,17.5,False,0.7433327436447144,0.0,0.42201441526412964,0.014556348323822021,0.003716663718223572
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- 2022-23,0.289,0.654,62.4,False,0.35339540243148804,0.4185779094696045,0.21081280708312988,0.3944040536880493,0.3758812240958214
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- 2023-24,0.479,0.27,83.5,False,0.09139998257160187,0.790522575378418,0.06890833377838135,0.7319334149360657,0.2572216870039702
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- 2024-25,0.496,0.437,126.2,False,0.540651261806488,0.0685829296708107,0.31223613023757935,0.07679343223571777,0.29813376612216236
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- 2025-26,0.111,0.808,78.2,False,0.23248238861560822,0.45992955565452576,0.1453227400779724,0.4319295287132263,0.39742862610518936
 
1
  season,pct_h1n1,pct_h3n2,hosp_rate_overall,covid_excluded,drift_h1n1,drift_h3n2,drift_h1n1_raw,drift_h3n2_raw,drift_blended
2
+ 2010-11,,,21.5,False,0.0,0.0,0.24803349375724792,0.6334457993507385,0.0
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+ 2011-12,,,8.7,False,0.42737308144569397,0.0,0.47171881794929504,0.35185497999191284,0.0
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+ 2012-13,,,44.0,False,0.1634288728237152,1.0,0.33357149362564087,0.8725459575653076,0.0
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+ 2013-14,,,35.1,False,0.4886437654495239,0.2716849446296692,0.503787636756897,0.4933188855648041,0.0
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+ 2014-15,,,64.1,False,1.0,0.1430070996284485,1.3686156272888184,0.4263174831867218,0.0
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+ 2015-16,0.545,0.154,31.4,False,1.0,0.1593417078256607,1.6669636964797974,0.43482276797294617,0.5695386230051518
8
+ 2016-17,0.024,0.744,62.0,False,0.0,0.3545049726963043,0.22882866859436035,0.5364425182342529,0.2637516996860504
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+ 2017-18,0.11,0.597,102.9,False,0.23939938843250275,0.697869598865509,0.5731173157691956,0.7152293920516968,0.44296208325028413
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+ 2018-19,0.52,0.42,63.6,False,0.018407050520181656,1.0,0.25530049204826355,1.0809413194656372,0.4295716662704944
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+ 2019-20,0.531,0.041,66.0,False,0.1415252536535263,0.9556406140327454,0.43236109614372253,1.0485994815826416,0.11433117486536504
12
+ 2021-22,0.005,0.986,17.5,False,0.22000403702259064,0.0,0.5452241897583008,0.13374482095241547,0.0011000201851129531
13
+ 2022-23,0.289,0.654,62.4,False,0.09678124636411667,0.6215881705284119,0.3680131733417511,0.7248035669326782,0.4344884437248111
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+ 2023-24,0.479,0.27,83.5,False,0.0,0.8864315748214722,0.2231203019618988,0.9766391515731812,0.2393365252017975
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+ 2024-25,0.496,0.437,126.2,False,0.19730809330940247,0.18943163752555847,0.5080022811889648,0.31387248635292053,0.18064643988013268
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+ 2025-26,0.111,0.808,78.2,False,0.20791903138160706,1.0,0.5233228206634521,1.1456024646759033,0.8310790124833585
results_new/drift_merged_diffae_lag2.csv CHANGED
@@ -1,16 +1,16 @@
1
  season,pct_h1n1,pct_h3n2,hosp_rate_overall,covid_excluded,drift_h1n1,drift_h3n2,drift_h1n1_raw,drift_h3n2_raw,drift_blended
2
- 2010-11,,,21.5,False,0.5,0.5,0.14873802661895752,0.11010384559631348,0.0
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- 2011-12,,,8.7,False,0.0,0.0,0.11635911464691162,0.05659991502761841,0.0
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- 2012-13,,,44.0,False,0.0,1.0,0.034369587898254395,0.23855775594711304,0.0
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- 2013-14,,,35.1,False,1.0,1.0,0.19507408142089844,0.29527735710144043,0.0
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- 2014-15,,,64.1,False,1.0,1.0,0.485450804233551,0.29961395263671875,0.0
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- 2015-16,0.545,0.154,31.4,False,0.29067638516426086,0.20866797864437103,0.16548824310302734,0.10730916261672974,0.19055349862575532
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- 2016-17,0.024,0.744,62.0,False,1.0,0.5314030647277832,0.514673113822937,0.18573832511901855,0.4193638801574707
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- 2017-18,0.11,0.597,102.9,False,0.4307566285133362,1.0,0.2412635087966919,0.4758920669555664,0.644383229136467
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- 2018-19,0.52,0.42,63.6,False,0.43961992859840393,1.0,0.24552059173583984,0.6298485994338989,0.64860236287117
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- 2019-20,0.531,0.041,66.0,False,0.40794679522514343,1.0,0.23030787706375122,0.8302085399627686,0.2576197482645512
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- 2021-22,0.005,0.986,17.5,False,1.0,0.8828786015510559,0.5474648475646973,1.0147404670715332,0.8755183011293411
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- 2022-23,0.289,0.654,62.4,False,1.0,0.30180490016937256,0.883577823638916,0.3841325044631958,0.48638040471076965
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- 2023-24,0.479,0.27,83.5,False,0.29947394132614136,0.6599213480949402,0.28868532180786133,0.7727769613265991,0.3216267818808556
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- 2024-25,0.496,0.437,126.2,False,0.3886423110961914,0.7357478141784668,0.36440783739089966,0.8550673723220825,0.5142883810997009
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- 2025-26,0.111,0.808,78.2,False,0.5333930253982544,0.32271715998649597,0.4873313307762146,0.406827449798584,0.319962091088295
 
1
  season,pct_h1n1,pct_h3n2,hosp_rate_overall,covid_excluded,drift_h1n1,drift_h3n2,drift_h1n1_raw,drift_h3n2_raw,drift_blended
2
+ 2010-11,,,21.5,False,0.5,0.5,0.7833124995231628,0.8496021628379822,0.0
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+ 2011-12,,,8.7,False,0.0,0.0,0.6248018145561218,0.6389385461807251,0.0
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+ 2017-18,0.11,0.597,102.9,False,0.2806801497936249,0.685522735118866,0.6795735359191895,0.9165430068969727,0.4401318893432617
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+ 2018-19,0.52,0.42,63.6,False,0.2683355510234833,0.869451642036438,0.6635075211524963,1.0503225326538086,0.5047041761875153
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+ 2019-20,0.531,0.041,66.0,False,0.21788424253463745,0.9902697801589966,0.5978472232818604,1.1381988525390625,0.15629759377241137
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+ 2021-22,0.005,0.986,17.5,False,0.24649176001548767,0.7569119334220886,0.6350787281990051,1.1520017385482788,0.7475476251542568
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+ 2022-23,0.289,0.654,62.4,False,0.3952478766441345,0.29455509781837463,0.8286787271499634,0.7035982012748718,0.30686567032337186
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+ 2023-24,0.479,0.27,83.5,False,0.08233045786619186,0.5973102450370789,0.42142951488494873,0.9972165822982788,0.2007100554779172
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+ 2024-25,0.496,0.437,126.2,False,0.18349717557430267,0.684760570526123,0.5530938506126404,1.082027792930603,0.3902549684047699
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+ 2025-26,0.111,0.808,78.2,False,0.38171088695526123,0.7308134436607361,0.811060905456543,1.1266908645629883,0.6328671709299089
results_new/drift_merged_tvae.csv CHANGED
@@ -1,16 +1,16 @@
1
  season,pct_h1n1,pct_h3n2,hosp_rate_overall,covid_excluded,drift_h1n1,drift_h3n2,drift_h1n1_raw,drift_h3n2_raw,drift_blended
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- 2010-11,,,21.5,False,0.0,0.0,0.00047069787979125977,1.9669532775878906e-06,0.0
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- 2011-12,,,8.7,False,0.0,0.0,0.000340878963470459,5.960464477539063e-08,0.0
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- 2014-15,,,64.1,False,1.0,0.05128205195069313,0.013018429279327393,1.7881393432617188e-07,0.0
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- 2016-17,0.024,0.744,62.0,False,0.0,0.5641025900840759,3.4749507904052734e-05,1.3709068298339844e-06,0.4196923270225525
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- 2017-18,0.11,0.597,102.9,False,0.0,1.0,1.3709068298339844e-06,7.271766662597656e-06,0.597
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- 2019-20,0.531,0.041,66.0,False,0.004503799136728048,0.515625,6.651878356933594e-05,3.993511199951172e-06,0.023532142341602592
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- 2021-22,0.005,0.986,17.5,False,0.07900809496641159,0.0,0.0011442303657531738,5.960464477539063e-08,0.00039504047483205794
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- 2022-23,0.289,0.654,62.4,False,0.06184585765004158,0.0,0.0008959770202636719,0.0,0.017873452860862015
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- 2023-24,0.479,0.27,83.5,False,0.012868585996329784,0.07751937955617905,0.0001875162124633789,5.960464477539062e-07,0.02709428517241031
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- 2024-25,0.496,0.437,126.2,False,0.014281947165727615,0.03875968977808952,0.0002079606056213379,2.980232238769531e-07,0.02402183022722602
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- 2025-26,0.111,0.808,78.2,False,0.0015328575391322374,0.13953489065170288,2.3543834686279297e-05,1.0728836059570312e-06,0.11291433883341961
 
1
  season,pct_h1n1,pct_h3n2,hosp_rate_overall,covid_excluded,drift_h1n1,drift_h3n2,drift_h1n1_raw,drift_h3n2_raw,drift_blended
2
+ 2010-11,,,21.5,False,0.0,0.0,0.08079483360052109,0.320244699716568,0.0
3
+ 2011-12,,,8.7,False,0.21383173763751984,0.0,0.17818517982959747,0.12218787521123886,0.0
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+ 2012-13,,,44.0,False,0.7733900547027588,0.43146035075187683,0.43303781747817993,0.24581404030323029,0.0
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+ 2013-14,,,35.1,False,0.5718334317207336,0.337878942489624,0.34123820066452026,0.2190001904964447,0.0
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+ 2014-15,,,64.1,False,1.0,0.0,0.9574033617973328,0.022658227011561394,0.0
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+ 2015-16,0.545,0.154,31.4,False,1.0,0.29587820172309875,1.0173341035842896,0.13688474893569946,0.5905652430653573
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+ 2016-17,0.024,0.744,62.0,False,0.08112185448408127,0.08684959262609482,0.15676863491535187,0.05618731305003166,0.0665630214214325
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+ 2017-18,0.11,0.597,102.9,False,0.16338147222995758,0.42963555455207825,0.2338080108165741,0.18852300941944122,0.27446438801288603
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1
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1
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results_new/drift_merged_vae.csv CHANGED
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1
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1
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results_new/drift_merged_vae_lag2.csv CHANGED
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1
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1
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1
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results_new/drift_scores_diffae_h1n1_lag2.csv CHANGED
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1
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1
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results_new/drift_scores_diffae_h3n2.csv CHANGED
@@ -1,18 +1,18 @@
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1
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results_new/drift_scores_diffae_h3n2_lag2.csv CHANGED
@@ -1,17 +1,17 @@
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1
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results_new/drift_scores_tvae_h1n1.csv CHANGED
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1
  season,drift_raw,n_sequences,drift_norm
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results_new/drift_scores_tvae_h1n1_lag2.csv CHANGED
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1
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results_new/drift_scores_tvae_h3n2.csv CHANGED
@@ -1,18 +1,18 @@
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1
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results_new/drift_scores_tvae_h3n2_lag2.csv CHANGED
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1
  season,drift_raw,n_sequences,drift_norm
2
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results_new/drift_scores_vae_h1n1.csv CHANGED
@@ -1,18 +1,18 @@
1
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1
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+ 2024-25,0.92283857,6155,0.1600038856267929,H1N1
18
+ 2025-26,0.9356745,89,0.16457200050354004,H1N1
results_new/drift_scores_vae_h1n1_lag2.csv CHANGED
@@ -1,17 +1,17 @@
1
  season,drift_raw,n_sequences,drift_norm,subtype
2
- 2010-11,0.014805198,134,0.5,H1N1
3
- 2011-12,0.008991301,42,0.0,H1N1
4
- 2012-13,0.0020292401,34,0.0,H1N1
5
- 2013-14,0.013143659,112,0.8699479699134827,H1N1
6
- 2014-15,0.051691115,140,1.0,H1N1
7
- 2015-16,0.0142633915,1524,0.24634896218776703,H1N1
8
- 2016-17,0.05461192,548,1.0,H1N1
9
- 2017-18,0.005262673,1146,0.061492353677749634,H1N1
10
- 2018-19,0.0038641691,2432,0.03489607200026512,H1N1
11
- 2019-20,0.0087111,2032,0.12707339227199554,H1N1
12
- 2020-21,0.013545036,12,0.2190035879611969,H1N1
13
- 2021-22,0.016340077,105,0.27215874195098877,H1N1
14
- 2022-23,0.022918582,2158,0.39726656675338745,H1N1
15
- 2023-24,0.003120482,6766,0.02075287513434887,H1N1
16
- 2024-25,0.003859818,6155,0.03481332212686539,H1N1
17
- 2025-26,0.009221911,89,0.13678783178329468,H1N1
 
1
  season,drift_raw,n_sequences,drift_norm,subtype
2
+ 2010-11,1.6838974,134,0.5,H1N1
3
+ 2011-12,1.3985306,42,0.0,H1N1
4
+ 2012-13,0.6572085,34,0.0,H1N1
5
+ 2013-14,1.6867098,112,1.0,H1N1
6
+ 2014-15,3.2757614,140,1.0,H1N1
7
+ 2015-16,1.7431368,1524,0.41470545530319214,H1N1
8
+ 2016-17,3.353836,548,1.0,H1N1
9
+ 2017-18,1.0407414,1146,0.14222688972949982,H1N1
10
+ 2018-19,0.915746,2432,0.0958743691444397,H1N1
11
+ 2019-20,1.3699945,2032,0.26432496309280396,H1N1
12
+ 2020-21,1.694672,12,0.38472625613212585,H1N1
13
+ 2021-22,1.8264662,105,0.43359997868537903,H1N1
14
+ 2022-23,2.197362,2158,0.5711405873298645,H1N1
15
+ 2023-24,0.7682978,6766,0.04119563475251198,H1N1
16
+ 2024-25,0.9557269,6155,0.11070064455270767,H1N1
17
+ 2025-26,1.4635142,89,0.2990052103996277,H1N1
results_new/drift_scores_vae_h3n2.csv CHANGED
@@ -1,18 +1,18 @@
1
  season,drift_raw,n_sequences,drift_norm,subtype
2
- 2009-10,0.0070052743,7,0.5,H3N2
3
- 2010-11,0.01200521,143,1.0,H3N2
4
- 2011-12,0.001640141,73,0.0,H3N2
5
- 2012-13,0.008458436,1091,0.6578146815299988,H3N2
6
- 2013-14,0.0014861226,86,0.0,H3N2
7
- 2014-15,0.0013374686,1432,0.0,H3N2
8
- 2015-16,0.0028934479,1238,0.14585836231708527,H3N2
9
- 2016-17,0.002705276,2591,0.12821902334690094,H3N2
10
- 2017-18,0.0051437616,2414,0.3568040132522583,H3N2
11
- 2018-19,0.02551359,3758,1.0,H3N2
12
- 2019-20,0.021522343,929,0.8349095582962036,H3N2
13
- 2020-21,0.01629734,82,0.6187871098518372,H3N2
14
- 2021-22,0.00073957443,5129,0.0,H3N2
15
- 2022-23,0.00878793,3827,0.32487085461616516,H3N2
16
- 2023-24,0.01919216,5038,0.7448362708091736,H3N2
17
- 2024-25,0.0010008216,6957,0.010545209050178528,H3N2
18
- 2025-26,0.016462147,520,0.6346396803855896,H3N2
 
1
  season,drift_raw,n_sequences,drift_norm,subtype
2
+ 2009-10,1.4049138,7,0.5,H3N2
3
+ 2010-11,1.825857,143,1.0,H3N2
4
+ 2011-12,0.69624805,73,0.0,H3N2
5
+ 2012-13,1.591902,1091,0.7928884625434875,H3N2
6
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7
+ 2014-15,0.66253525,1432,0.006791088730096817,H3N2
8
+ 2015-16,0.8975233,1238,0.20741674304008484,H3N2
9
+ 2016-17,0.864383,2591,0.17912256717681885,H3N2
10
+ 2017-18,1.2707253,2414,0.5260452628135681,H3N2
11
+ 2018-19,2.766827,3758,1.0,H3N2
12
+ 2019-20,2.5845807,929,0.913719117641449,H3N2
13
+ 2020-21,2.179455,82,0.7219206094741821,H3N2
14
+ 2021-22,0.44372347,5129,0.0,H3N2
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+ 2022-23,1.6073804,3827,0.5009061694145203,H3N2
16
+ 2023-24,2.3581033,5038,0.8240612745285034,H3N2
17
+ 2024-25,0.55099255,6957,0.046174898743629456,H3N2
18
+ 2025-26,2.223808,520,0.7662527561187744,H3N2
results_new/drift_scores_vae_h3n2_lag2.csv CHANGED
@@ -1,17 +1,17 @@
1
  season,drift_raw,n_sequences,drift_norm,subtype
2
- 2010-11,0.014244914,143,0.5,H3N2
3
- 2011-12,0.01103425,73,0.0,H3N2
4
- 2012-13,0.0117957,1091,0.23716259002685547,H3N2
5
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6
- 2014-15,0.0039063096,1432,0.0,H3N2
7
- 2015-16,0.00179106,1238,0.0,H3N2
8
- 2016-17,0.004705727,2591,0.2340373545885086,H3N2
9
- 2017-18,0.0076680183,2414,0.47189876437187195,H3N2
10
- 2018-19,0.017674148,3758,1.0,H3N2
11
- 2019-20,0.015515804,929,0.8641105890274048,H3N2
12
- 2020-21,0.026041567,82,1.0,H3N2
13
- 2021-22,0.020148516,5129,0.7569926381111145,H3N2
14
- 2022-23,0.007463753,3827,0.2339206039905548,H3N2
15
- 2023-24,0.018871784,5038,0.7043450474739075,H3N2
16
- 2024-25,0.019896269,6957,0.7465909123420715,H3N2
17
- 2025-26,0.019105077,520,0.713965117931366,H3N2
 
1
  season,drift_raw,n_sequences,drift_norm,subtype
2
+ 2010-11,1.9789981,143,0.5,H3N2
3
+ 2011-12,1.7092272,73,0.0,H3N2
4
+ 2012-13,1.8436763,1091,0.49838268756866455,H3N2
5
+ 2013-14,1.811368,86,0.37862053513526917,H3N2
6
+ 2014-15,1.0837401,1432,0.0,H3N2
7
+ 2015-16,0.71728635,1238,0.0,H3N2
8
+ 2016-17,1.1230123,2591,0.3215678632259369,H3N2
9
+ 2017-18,1.4976802,2414,0.6185199022293091,H3N2
10
+ 2018-19,2.3151226,3758,1.0,H3N2
11
+ 2019-20,2.184429,929,0.9182058572769165,H3N2
12
+ 2020-21,2.789879,82,1.0,H3N2
13
+ 2021-22,2.4169564,5129,0.8200694918632507,H3N2
14
+ 2022-23,1.4693893,3827,0.36288025975227356,H3N2
15
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16
+ 2024-25,2.4012733,6957,0.8125025629997253,H3N2
17
+ 2025-26,2.3937602,520,0.8088775873184204,H3N2
results_new/full_model_comparison.csv CHANGED
@@ -1,16 +1,16 @@
1
  Model,Split,RMSE,MAE,r,rho
2
- DiffAE lag-1,Calib,24.453047715751815,20.8268985748291,0.4805652629575084,0.32732683535398854
3
- DiffAE lag-1,Valid,45.613358530068346,41.47363090515137,0.5199037494883089,0.051298917604257706
4
- DiffAE lag-1,All,34.17883366902508,28.767949471106895,0.19729320726945393,-0.12735463688844548
5
- VAE lag-1,Calib,21.27963731355251,17.07371435165405,0.825050977249249,0.627376434428478
6
- VAE lag-1,Valid,15.817885401639272,13.775167694091797,0.8402969018651129,0.3
7
- VAE lag-1,All,19.36215818880429,15.805042560283953,0.8134943844640508,0.6330209818846932
8
- TVAE lag-1,Calib,46.39452823340613,34.32750282287598,-0.5370477214378062,-0.39440531887330776
9
- TVAE lag-1,Valid,40.22642849598766,36.660963439941405,-0.0680930014789966,0.7
10
- TVAE lag-1,All,44.12433982745768,35.224987675593454,-0.32861010759527765,0.0946433304848482
11
- DiffAE lag-2,Calib,15.33315413227114,11.644674205780028,0.8332667156690649,0.5182674893104819
12
- DiffAE lag-2,Valid,76.04158434283927,54.98284149169922,-0.9075449941307687,-0.7999999999999999
13
- DiffAE lag-2,All,48.66878455595186,28.31320008497972,0.05845559868325538,0.31085851788980473
14
- DiffAE combined,Calib,46.39452823340613,34.32750282287598,-0.5370477214378062,-0.39440531887330776
15
- DiffAE combined,Valid,61.6530979642301,57.709837436676025,0.16876092254588715,0.35355339059327373
16
- DiffAE combined,All,52.787775714092476,43.3207084435683,-0.48405546729360127,-0.3335621924974955
 
1
  Model,Split,RMSE,MAE,r,rho
2
+ DiffAE lag-1,Calib,22.323917069756334,18.37680444717407,0.6143669122699478,0.4637130167514838
3
+ DiffAE lag-1,Valid,13.815042392488792,11.274394989013672,0.8629681118871249,0.19999999999999998
4
+ DiffAE lag-1,All,19.49582828794639,15.645108501727764,0.7065318730031063,0.47476573641351993
5
+ VAE lag-1,Calib,20.99418747602644,17.29197368621826,0.7985959909997646,0.5182674893104819
6
+ VAE lag-1,Valid,13.738709183458699,10.966610565185547,0.9443396190245661,0.3
7
+ VAE lag-1,All,18.542690685937565,14.859141716590292,0.8191675733083476,0.6782367663050285
8
+ TVAE lag-1,Calib,21.054660006974473,17.548118686676023,0.8405077068822446,0.627376434428478
9
+ TVAE lag-1,Valid,24.801054302929714,22.986775207519532,-0.15704515676167294,-0.3
10
+ TVAE lag-1,All,22.569296940003497,19.639909656231218,0.6957236663337133,0.5369374399914808
11
+ DiffAE lag-2,Calib,16.686078268217162,13.502550983428954,0.7987288699056319,0.5182674893104819
12
+ DiffAE lag-2,Valid,137.1873527535412,83.99655624389648,-0.9313202351931937,-0.7999999999999999
13
+ DiffAE lag-2,All,86.08102195981827,40.61562992976262,-0.12971766271148052,0.33911838315251425
14
+ DiffAE combined,Calib,22.680748614231156,18.513526916503906,0.578400170750442,0.4364357804719847
15
+ DiffAE combined,Valid,27.530240531711936,22.10288314819336,-0.39407472429699153,-0.6
16
+ DiffAE combined,All,24.659062275959073,19.894048544076774,0.4391112366893099,0.31085851788980473
results_new/latent_diversity_diffae_h3n2.csv CHANGED
@@ -1,16 +1,16 @@
1
  season,latent_spread,latent_spread_std,latent_var_trace,n_sequences
2
- 2008-09,0.347987,0.17535543,0.1524878753025316,237
3
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4
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5
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7
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12
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13
- 2019-20,0.81788504,0.25054094,0.7324951690819379,929
14
  2020-21,0.4543805,0.1872162,0.24449315948622538,82
15
  2021-22,0.5339615,0.2853101,0.3665882131894259,5129
16
  2022-23,0.5956991,0.27208915,0.42900196133832713,3827
 
1
  season,latent_spread,latent_spread_std,latent_var_trace,n_sequences
2
+ 2008-09,0.3479869,0.17535543,0.1524878694887088,237
3
+ 2009-10,0.9072131,0.46394446,1.2113266381031922,7
4
+ 2010-11,0.5297071,0.48135176,0.5158967894301155,143
5
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6
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+ 2019-20,0.81788504,0.2505409,0.7324951709220148,929
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  2020-21,0.4543805,0.1872162,0.24449315948622538,82
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  2021-22,0.5339615,0.2853101,0.3665882131894259,5129
16
  2022-23,0.5956991,0.27208915,0.42900196133832713,3827
results_new/latent_diversity_tvae_h3n2.csv CHANGED
@@ -1,19 +1,19 @@
1
  season,latent_spread,latent_spread_std,latent_var_trace,n_sequences
2
- 2008-09,7.9300036e-05,0.00014011207,2.602971489239697e-08,237
3
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- 2019-20,0.00057469,0.00012665374,3.4668298319523156e-07,929
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- 2020-21,8.5427695e-05,0.00016032775,3.341029945842962e-08,82
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- 2022-23,0.000118606855,0.00015142615,3.70067557509334e-08,3827
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- 2023-24,0.00013388623,0.00028931274,1.0164470966745111e-07,5038
18
- 2024-25,0.00018824854,0.00031510906,1.3475044243798944e-07,6957
19
- 2025-26,0.00010341611,8.440803e-05,1.7853915756260216e-08,520
 
1
  season,latent_spread,latent_spread_std,latent_var_trace,n_sequences
2
+ 2008-09,0.1899764,0.19351427,0.07385040583798541,237
3
+ 2009-10,0.5922931,0.4404251,0.6355828654668045,7
4
+ 2010-11,0.20078479,0.9103973,0.875258329948087,143
5
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6
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7
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8
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9
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12
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13
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14
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19
+ 2025-26,0.3271324,0.48455364,0.34246640710653276,520
results_new/latent_diversity_vae_h3n2.csv CHANGED
@@ -1,16 +1,16 @@
1
  season,latent_spread,latent_spread_std,latent_var_trace,n_sequences
2
- 2008-09,1.1181061,0.4525268,1.4611071439171985,237
3
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4
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13
- 2019-20,1.7020738,0.6248811,3.291074130282821,929
14
  2020-21,1.409919,0.53167903,2.298585792477243,82
15
  2021-22,1.4070408,0.5941305,2.333209929302637,5129
16
  2022-23,1.6019987,0.5715492,2.8938246012376405,3827
 
1
  season,latent_spread,latent_spread_std,latent_var_trace,n_sequences
2
+ 2008-09,1.1181064,0.4525268,1.461107117649001,237
3
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  2022-23,1.6019987,0.5715492,2.8938246012376405,3827
results_new/sirc_params_diffae.csv CHANGED
@@ -1,11 +1,11 @@
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results_new/sirc_params_diffae_combined.csv CHANGED
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results_new/sirc_params_diffae_lag2.csv CHANGED
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results_new/sirc_params_tvae.csv CHANGED
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1
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results_new/sirc_params_vae.csv CHANGED
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results_new/sirc_simulation_diffae.csv CHANGED
@@ -1,14 +1,14 @@
1
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1
  season,drift_blended,hosp_obs,hosp_sim,delta_used,S0_used
2
+ 2010-11,0.0,21.5,36.69405,0.011883496306836605,0.4452793598175049
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results_new/sirc_simulation_diffae_combined.csv CHANGED
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1
  season,drift_combined,hosp_obs,hosp_sim
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results_new/sirc_simulation_diffae_lag2.csv CHANGED
@@ -1,14 +1,14 @@
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- 2023-24,0.3216267818808556,83.5,42.12181
 
1
  season,drift_blended,hosp_obs,hosp_sim
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results_new/sirc_simulation_tvae.csv CHANGED
@@ -1,14 +1,14 @@
1
  season,drift_blended,hosp_obs,hosp_sim
2
- 2010-11,0.0,21.5,34.679977
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- 2023-24,0.02709428517241031,83.5,36.612465
 
1
  season,drift_blended,hosp_obs,hosp_sim
2
+ 2010-11,0.0,21.5,42.16406
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results_new/sirc_simulation_vae.csv CHANGED
@@ -1,14 +1,14 @@
1
  season,drift_blended,hosp_obs,hosp_sim
2
- 2010-11,0.0,21.5,42.340324
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- 2023-24,0.20110579311847687,83.5,64.32675
 
1
  season,drift_blended,hosp_obs,hosp_sim
2
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