Upload 2 files
Browse files- core_test.json.gpg +0 -0
- core_train.json +1028 -0
core_test.json.gpg
ADDED
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Binary file (8.62 kB). View file
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core_train.json
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@@ -0,0 +1,1028 @@
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|
| 1 |
+
[
|
| 2 |
+
{
|
| 3 |
+
"field": "Computer Science",
|
| 4 |
+
"language": "Python",
|
| 5 |
+
"capsule_title": "K-Core based Temporal Graph Convolutional Network for Dynamic Graphs",
|
| 6 |
+
"capsule_id": "capsule-7038571",
|
| 7 |
+
"task_prompt": "Run the main.py file three times. First, with config/uci.json, the preprocessing task, and the CTGCN-C method. Second, with config/uci.json, the embedding task, and the CTGCN-C method. Third, using python3 with config/uci.json and the link-pred task.",
|
| 8 |
+
"results": [
|
| 9 |
+
{
|
| 10 |
+
"Report the average AUC score of Had using the CTGCN-C method on the UCI dataset.": 0.9375660604380387
|
| 11 |
+
},
|
| 12 |
+
{
|
| 13 |
+
"Report the average AUC score of Had using the CTGCN-C method on the UCI dataset.": 0.9372440957792072
|
| 14 |
+
},
|
| 15 |
+
{
|
| 16 |
+
"Report the average AUC score of Had using the CTGCN-C method on the UCI dataset.": 0.931951440752941
|
| 17 |
+
}
|
| 18 |
+
],
|
| 19 |
+
"capsule_doi": "https://doi.org/10.24433/CO.9707317.v1"
|
| 20 |
+
},
|
| 21 |
+
{
|
| 22 |
+
"field": "Social Sciences",
|
| 23 |
+
"language": "R",
|
| 24 |
+
"capsule_title": "Analytic reproducibility in articles receiving open data badges at the journal Psychological Science: An observational study",
|
| 25 |
+
"capsule_id": "capsule-3137115",
|
| 26 |
+
"task_prompt": "Run the manuscript.Rmd file using Rscript and render it as html. Put the results in the \"../results\" folder. ",
|
| 27 |
+
"results": [
|
| 28 |
+
{
|
| 29 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 1 in the table (ignore the confidence interval).": 6,
|
| 30 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 2 in the table (ignore the confidence interval).": 9,
|
| 31 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 3 in the table (ignore the confidence interval).": 7,
|
| 32 |
+
"fig From Figure 1, report the proportion of articles with fully reproducible target values from the random effects model after author contact. Ignore the confidence intervals": 0.62
|
| 33 |
+
},
|
| 34 |
+
{
|
| 35 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 1 in the table (ignore the confidence interval).": 6,
|
| 36 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 2 in the table (ignore the confidence interval).": 9,
|
| 37 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 3 in the table (ignore the confidence interval).": 7,
|
| 38 |
+
"fig From Figure 1, report the proportion of articles with fully reproducible target values from the random effects model after author contact. Ignore the confidence intervals": 0.62
|
| 39 |
+
},
|
| 40 |
+
{
|
| 41 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 1 in the table (ignore the confidence interval).": 6,
|
| 42 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 2 in the table (ignore the confidence interval).": 9,
|
| 43 |
+
"Report the final outcomes of reproducibility checks at the article level after original authors were contacted (Table 1 of the manuscript). You should report n for row 3 in the table (ignore the confidence interval).": 7,
|
| 44 |
+
"fig From Figure 1, report the proportion of articles with fully reproducible target values from the random effects model after author contact. Ignore the confidence intervals": 0.62
|
| 45 |
+
}
|
| 46 |
+
],
|
| 47 |
+
"capsule_doi": "https://doi.org/10.24433/CO.1796004.v3"
|
| 48 |
+
},
|
| 49 |
+
{
|
| 50 |
+
"field": "Computer Science",
|
| 51 |
+
"language": "Python",
|
| 52 |
+
"capsule_title": "HyperETA: A Non\u2013Deep Learning Method for Estimated Time of Arrival",
|
| 53 |
+
"capsule_id": "capsule-5367566",
|
| 54 |
+
"task_prompt": "Run run.ipynb and convert the results to html.",
|
| 55 |
+
"results": [
|
| 56 |
+
{
|
| 57 |
+
"Report the HyperETA MAPE with no DTW.": 17.374344500709498,
|
| 58 |
+
"Report the HyperETA RMSE with no DTW.": 459.7782074000463,
|
| 59 |
+
"Report the HyperETA MAE with no DTW.": 323.0
|
| 60 |
+
},
|
| 61 |
+
{
|
| 62 |
+
"Report the HyperETA MAPE with no DTW.": 17.374344500709498,
|
| 63 |
+
"Report the HyperETA RMSE with no DTW.": 459.7782074000463,
|
| 64 |
+
"Report the HyperETA MAE with no DTW.": 323.0
|
| 65 |
+
},
|
| 66 |
+
{
|
| 67 |
+
"Report the HyperETA MAPE with no DTW.": 17.374344500709498,
|
| 68 |
+
"Report the HyperETA RMSE with no DTW.": 459.7782074000463,
|
| 69 |
+
"Report the HyperETA MAE with no DTW.": 323.0
|
| 70 |
+
}
|
| 71 |
+
],
|
| 72 |
+
"capsule_doi": "https://doi.org/10.24433/CO.3533137.v1"
|
| 73 |
+
},
|
| 74 |
+
{
|
| 75 |
+
"field": "Medical Sciences",
|
| 76 |
+
"language": "R",
|
| 77 |
+
"capsule_title": "Research Ethics Committees as an intervention point to promote a priori sample size calculations",
|
| 78 |
+
"capsule_id": "capsule-9168639",
|
| 79 |
+
"task_prompt": "Run the analysis.Rmd file using Rscript and output the results in the 'results' directory.",
|
| 80 |
+
"results": [
|
| 81 |
+
{
|
| 82 |
+
"fig Report Institutions Sampled for US in Table 1.": 19,
|
| 83 |
+
"fig Report Institutions Sampled for UK in Table 1.": 14
|
| 84 |
+
},
|
| 85 |
+
{
|
| 86 |
+
"fig Report Institutions Sampled for US in Table 1.": 19,
|
| 87 |
+
"fig Report Institutions Sampled for UK in Table 1.": 14
|
| 88 |
+
},
|
| 89 |
+
{
|
| 90 |
+
"fig Report Institutions Sampled for US in Table 1.": 19,
|
| 91 |
+
"fig Report Institutions Sampled for UK in Table 1.": 14
|
| 92 |
+
}
|
| 93 |
+
],
|
| 94 |
+
"capsule_doi": "https://doi.org/10.24433/CO.0124369.v1"
|
| 95 |
+
},
|
| 96 |
+
{
|
| 97 |
+
"field": "Computer Science",
|
| 98 |
+
"language": "Python",
|
| 99 |
+
"capsule_title": "Synthetic Electrocardiogram Attack Method",
|
| 100 |
+
"capsule_id": "capsule-9166182",
|
| 101 |
+
"task_prompt": "Run 'Synthetic Electrocardiogram Attack Method.ipynb' and convert the results file to 'html'",
|
| 102 |
+
"results": [
|
| 103 |
+
{
|
| 104 |
+
"For experiment 1, report the adversary errors without SEAM.": 58,
|
| 105 |
+
"For experiment 1, report the adversary errors with SEAM.": 17,
|
| 106 |
+
"For experiment 2, report the adversary errors without SEAM.": 27,
|
| 107 |
+
"For experiment 2, report the adversary errors with SEAM.": 21,
|
| 108 |
+
"For experiment 3, report the adversary errors without SEAM.": 47,
|
| 109 |
+
"For experiment 3, report the adversary errors with SEAM.": 19
|
| 110 |
+
},
|
| 111 |
+
{
|
| 112 |
+
"For experiment 1, report the adversary errors without SEAM.": 58,
|
| 113 |
+
"For experiment 1, report the adversary errors with SEAM.": 17,
|
| 114 |
+
"For experiment 2, report the adversary errors without SEAM.": 27,
|
| 115 |
+
"For experiment 2, report the adversary errors with SEAM.": 21,
|
| 116 |
+
"For experiment 3, report the adversary errors without SEAM.": 47,
|
| 117 |
+
"For experiment 3, report the adversary errors with SEAM.": 19
|
| 118 |
+
},
|
| 119 |
+
{
|
| 120 |
+
"For experiment 1, report the adversary errors without SEAM.": 58,
|
| 121 |
+
"For experiment 1, report the adversary errors with SEAM.": 17,
|
| 122 |
+
"For experiment 2, report the adversary errors without SEAM.": 27,
|
| 123 |
+
"For experiment 2, report the adversary errors with SEAM.": 21,
|
| 124 |
+
"For experiment 3, report the adversary errors without SEAM.": 47,
|
| 125 |
+
"For experiment 3, report the adversary errors with SEAM.": 19
|
| 126 |
+
}
|
| 127 |
+
],
|
| 128 |
+
"capsule_doi": "https://doi.org/10.1109/jsen.2021.3079177"
|
| 129 |
+
},
|
| 130 |
+
{
|
| 131 |
+
"field": "Medical Sciences",
|
| 132 |
+
"language": "R",
|
| 133 |
+
"capsule_title": "Identifying Predictors of Within-person Variance in MRI-based Brain Volume estimates",
|
| 134 |
+
"capsule_id": "capsule-0325493",
|
| 135 |
+
"task_prompt": "Run 'main.R' using Rscript",
|
| 136 |
+
"results": [
|
| 137 |
+
{
|
| 138 |
+
"For the within-variance improvements, report the improvement for the FS_TotalGrayVol outcome with the Day variable.": 1.8,
|
| 139 |
+
"For the within-variance improvements, report the improvement for the FS_CortexVol outcome with the Day variable.": 1.75,
|
| 140 |
+
"fig Report the name of the model, LASSO or Random Forest, which has the higher out-of-sample R^2 in % for FS-GM.": "LASSO"
|
| 141 |
+
},
|
| 142 |
+
{
|
| 143 |
+
"For the within-variance improvements, report the improvement for the FS_TotalGrayVol outcome with the Day variable.": 1.8,
|
| 144 |
+
"For the within-variance improvements, report the improvement for the FS_CortexVol outcome with the Day variable.": 1.75,
|
| 145 |
+
"fig Report the name of the model, LASSO or Random Forest, which has the higher out-of-sample R^2 in % for FS-GM.": "LASSO"
|
| 146 |
+
},
|
| 147 |
+
{
|
| 148 |
+
"For the within-variance improvements, report the improvement for the FS_TotalGrayVol outcome with the Day variable.": 1.8,
|
| 149 |
+
"For the within-variance improvements, report the improvement for the FS_CortexVol outcome with the Day variable.": 1.75,
|
| 150 |
+
"fig Report the name of the model, LASSO or Random Forest, which has the higher out-of-sample R^2 in % for FS-GM.": "LASSO"
|
| 151 |
+
}
|
| 152 |
+
],
|
| 153 |
+
"capsule_doi": "https://doi.org/10.24433/CO.3688518.v1"
|
| 154 |
+
},
|
| 155 |
+
{
|
| 156 |
+
"field": "Medical Sciences",
|
| 157 |
+
"language": "Python",
|
| 158 |
+
"capsule_title": "An Attention-based CNN-BiLSTM Hybrid Neural Network Enhanced with Features of Discrete Wavelet Transformation for Fetal Acidosis Classification",
|
| 159 |
+
"capsule_id": "capsule-1854976",
|
| 160 |
+
"task_prompt": "Run the 'evaluation.py' file.",
|
| 161 |
+
"results": [
|
| 162 |
+
{
|
| 163 |
+
"Report the final sensitivity (Sen1) after the ten different verifications.": 75.23,
|
| 164 |
+
"Report the final specificity (Spe1) after the ten different verifications.": 70.82,
|
| 165 |
+
"Report the final quality index (QI) after the ten different verifications.": 72.29
|
| 166 |
+
},
|
| 167 |
+
{
|
| 168 |
+
"Report the final sensitivity (Sen1) after the ten different verifications.": 75.23,
|
| 169 |
+
"Report the final specificity (Spe1) after the ten different verifications.": 70.82,
|
| 170 |
+
"Report the final quality index (QI) after the ten different verifications.": 72.29
|
| 171 |
+
},
|
| 172 |
+
{
|
| 173 |
+
"Report the final sensitivity (Sen1) after the ten different verifications.": 75.23,
|
| 174 |
+
"Report the final specificity (Spe1) after the ten different verifications.": 70.82,
|
| 175 |
+
"Report the final quality index (QI) after the ten different verifications.": 72.29
|
| 176 |
+
}
|
| 177 |
+
],
|
| 178 |
+
"capsule_doi": "https://doi.org/10.24433/CO.4834924.v1"
|
| 179 |
+
},
|
| 180 |
+
{
|
| 181 |
+
"field": "Computer Science",
|
| 182 |
+
"language": "R",
|
| 183 |
+
"capsule_title": "Development of an Internet of Things Solution to Monitor and Analyse Indoor Air Quality",
|
| 184 |
+
"capsule_id": "capsule-9022937",
|
| 185 |
+
"task_prompt": "Run 'IAQ-PostCollection-Analysis.R' using Rscript.",
|
| 186 |
+
"results": [
|
| 187 |
+
{
|
| 188 |
+
"fig From the Experimental IAQ Data graph, report the y-axis label.": "Gas Resistance",
|
| 189 |
+
"fig From the Indoor Air Quality - Kitchen - Autumn plot, report the correlation between hum and gas.": -0.773
|
| 190 |
+
},
|
| 191 |
+
{
|
| 192 |
+
"fig From the Experimental IAQ Data graph, report the y-axis label.": "Gas Resistance",
|
| 193 |
+
"fig From the Indoor Air Quality - Kitchen - Autumn plot, report the correlation between hum and gas.": -0.773
|
| 194 |
+
},
|
| 195 |
+
{
|
| 196 |
+
"fig From the Experimental IAQ Data graph, report the y-axis label.": "Gas Resistance",
|
| 197 |
+
"fig From the Indoor Air Quality - Kitchen - Autumn plot, report the correlation between hum and gas.": -0.773
|
| 198 |
+
}
|
| 199 |
+
],
|
| 200 |
+
"capsule_doi": "https://doi.org/10.24433/CO.2005560.v1"
|
| 201 |
+
},
|
| 202 |
+
{
|
| 203 |
+
"field": "Computer Science",
|
| 204 |
+
"language": "Python",
|
| 205 |
+
"capsule_title": "Low-Latency Live Video Streaming over a Low-Earth-Orbit Satellite Network with DASH",
|
| 206 |
+
"capsule_id": "capsule-8197429",
|
| 207 |
+
"task_prompt": "Run 'plot.sh'.",
|
| 208 |
+
"results": [
|
| 209 |
+
{
|
| 210 |
+
"fig From the figure measuring average bitrate (Kbps) over the Starlink network, report the name of the model with the highest average bitrate for 5 seconds of latency.": "L2A-LL",
|
| 211 |
+
"fig From the figure measuring average RTT without ISL, report the x-axis label.": "Seconds"
|
| 212 |
+
},
|
| 213 |
+
{
|
| 214 |
+
"fig From the figure measuring average bitrate (Kbps) over the Starlink network, report the name of the model with the highest average bitrate for 5 seconds of latency.": "L2A-LL",
|
| 215 |
+
"fig From the figure measuring average RTT without ISL, report the x-axis label.": "Seconds"
|
| 216 |
+
},
|
| 217 |
+
{
|
| 218 |
+
"fig From the figure measuring average bitrate (Kbps) over the Starlink network, report the name of the model with the highest average bitrate for 5 seconds of latency.": "L2A-LL",
|
| 219 |
+
"fig From the figure measuring average RTT without ISL, report the x-axis label.": "Seconds"
|
| 220 |
+
}
|
| 221 |
+
],
|
| 222 |
+
"capsule_doi": "https://doi.org/10.24433/CO.7355266.v1"
|
| 223 |
+
},
|
| 224 |
+
{
|
| 225 |
+
"field": "Social Sciences",
|
| 226 |
+
"language": "R",
|
| 227 |
+
"capsule_title": "Example of compute capsule for the book chapter \"Developing and Disseminating Data Analysis Tools for Open Science\"",
|
| 228 |
+
"capsule_id": "capsule-2916503",
|
| 229 |
+
"task_prompt": "Run 'code.R' using Rscript",
|
| 230 |
+
"results": [
|
| 231 |
+
{
|
| 232 |
+
"Report the Variances estimate for Exam1.": 118.195,
|
| 233 |
+
"Report the Variances estimate for Exam2.": 124.754,
|
| 234 |
+
"Report the Variances estimate for Exam3.": 87.973
|
| 235 |
+
},
|
| 236 |
+
{
|
| 237 |
+
"Report the Variances estimate for Exam1.": 118.195,
|
| 238 |
+
"Report the Variances estimate for Exam2.": 124.754,
|
| 239 |
+
"Report the Variances estimate for Exam3.": 87.973
|
| 240 |
+
},
|
| 241 |
+
{
|
| 242 |
+
"Report the Variances estimate for Exam1.": 118.195,
|
| 243 |
+
"Report the Variances estimate for Exam2.": 124.754,
|
| 244 |
+
"Report the Variances estimate for Exam3.": 87.973
|
| 245 |
+
}
|
| 246 |
+
],
|
| 247 |
+
"capsule_doi": "https://doi.org/10.24433/CO.8235849.v1"
|
| 248 |
+
},
|
| 249 |
+
{
|
| 250 |
+
"field": "Medical Sciences",
|
| 251 |
+
"language": "Python",
|
| 252 |
+
"capsule_title": "Fully automatic atrial fibrillation screening and atrial fibrillation detection",
|
| 253 |
+
"capsule_id": "capsule-0201225",
|
| 254 |
+
"task_prompt": "Run 'main.py'.",
|
| 255 |
+
"results": [
|
| 256 |
+
{
|
| 257 |
+
"Report the AUC at the 'sample-level'.": 0.998,
|
| 258 |
+
"Report the sensitivity at the 'sample-level'.": 0.966,
|
| 259 |
+
"Report the specificity at the 'sample-level'.": 0.994,
|
| 260 |
+
"Report the accuracy at the 'sample-level'.": 0.992,
|
| 261 |
+
"Report the AUC at the 'patient-level'.": 0.998,
|
| 262 |
+
"Report the sensitivity at the 'patient-level'.": 1.0,
|
| 263 |
+
"Report the specificity at the 'patient-level'.": 0.972,
|
| 264 |
+
"Report the accuracy at the 'patient-level'.": 0.978
|
| 265 |
+
},
|
| 266 |
+
{
|
| 267 |
+
"Report the AUC at the 'sample-level'.": 0.998,
|
| 268 |
+
"Report the sensitivity at the 'sample-level'.": 0.966,
|
| 269 |
+
"Report the specificity at the 'sample-level'.": 0.994,
|
| 270 |
+
"Report the accuracy at the 'sample-level'.": 0.992,
|
| 271 |
+
"Report the AUC at the 'patient-level'.": 0.998,
|
| 272 |
+
"Report the sensitivity at the 'patient-level'.": 1.0,
|
| 273 |
+
"Report the specificity at the 'patient-level'.": 0.972,
|
| 274 |
+
"Report the accuracy at the 'patient-level'.": 0.978
|
| 275 |
+
},
|
| 276 |
+
{
|
| 277 |
+
"Report the AUC at the 'sample-level'.": 0.998,
|
| 278 |
+
"Report the sensitivity at the 'sample-level'.": 0.966,
|
| 279 |
+
"Report the specificity at the 'sample-level'.": 0.994,
|
| 280 |
+
"Report the accuracy at the 'sample-level'.": 0.992,
|
| 281 |
+
"Report the AUC at the 'patient-level'.": 0.998,
|
| 282 |
+
"Report the sensitivity at the 'patient-level'.": 1.0,
|
| 283 |
+
"Report the specificity at the 'patient-level'.": 0.972,
|
| 284 |
+
"Report the accuracy at the 'patient-level'.": 0.978
|
| 285 |
+
}
|
| 286 |
+
],
|
| 287 |
+
"capsule_doi": "https://doi.org/10.24433/CO.8603914.v1"
|
| 288 |
+
},
|
| 289 |
+
{
|
| 290 |
+
"field": "Medical Sciences",
|
| 291 |
+
"language": "R",
|
| 292 |
+
"capsule_title": "Intermittent Drug Treatment of BRAF<sup>V600E</sup> Melanoma Cells Delays Resistance by Sensitizing Cells to Rechallenge",
|
| 293 |
+
"capsule_id": "capsule-9070543",
|
| 294 |
+
"task_prompt": "Make the Dose_Response_Script_Output, RNA_Seq_Script_Output, Resistance_and_Sensitivity_Genes_Script_Output, Fig6c_Script_Output folders in the results folder to store the outputs. Then run the .Rmd files in this order: Dose_Response_Script.Rmd, RNA_Seq_Script.Rmd, Figure_6c_Script.Rmd. Store the outputs in ../results in the respective results folders. ",
|
| 295 |
+
"results": [
|
| 296 |
+
{
|
| 297 |
+
"fig From the figure 4 continuous dose response, report the name of the sample with the highest normalized cell number at an LGX818 concentration of 0.": "Vector Control"
|
| 298 |
+
},
|
| 299 |
+
{
|
| 300 |
+
"fig From the figure 4 continuous dose response, report the name of the sample with the highest normalized cell number at an LGX818 concentration of 0.": "Vector Control"
|
| 301 |
+
},
|
| 302 |
+
{
|
| 303 |
+
"fig From the figure 4 continuous dose response, report the name of the sample with the highest normalized cell number at an LGX818 concentration of 0.": "Vector Control"
|
| 304 |
+
}
|
| 305 |
+
],
|
| 306 |
+
"capsule_doi": "https://doi.org/10.24433/CO.4dfd5a01-8d79-40ac-9d7a-10915b8b0e2e"
|
| 307 |
+
},
|
| 308 |
+
{
|
| 309 |
+
"field": "Social Sciences",
|
| 310 |
+
"language": "R",
|
| 311 |
+
"capsule_title": "Effectiveness and equity of Payments for Ecosystem Services: Real-effort experiments with Vietnamese land users",
|
| 312 |
+
"capsule_id": "capsule-1108125",
|
| 313 |
+
"task_prompt": "Run 'analysis.R' using Rscript.",
|
| 314 |
+
"results": [
|
| 315 |
+
{
|
| 316 |
+
"Please report the mean of forestgroup.": 0.34,
|
| 317 |
+
"Please report the mean of gender.": 0.46,
|
| 318 |
+
"Please report the mean of income.": 1.0,
|
| 319 |
+
"fig Report 'decrease' if the eigen values of factors and components decreases as the factor or component number increases. Report 'increase' otherwise.": "decrease"
|
| 320 |
+
},
|
| 321 |
+
{
|
| 322 |
+
"Please report the mean of forestgroup.": 0.34,
|
| 323 |
+
"Please report the mean of gender.": 0.46,
|
| 324 |
+
"Please report the mean of income.": 1.0,
|
| 325 |
+
"fig Report 'decrease' if the eigen values of factors and components decreases as the factor or component number increases. Report 'increase' otherwise.": "decrease"
|
| 326 |
+
},
|
| 327 |
+
{
|
| 328 |
+
"Please report the mean of forestgroup.": 0.34,
|
| 329 |
+
"Please report the mean of gender.": 0.46,
|
| 330 |
+
"Please report the mean of income.": 1.0,
|
| 331 |
+
"fig Report 'decrease' if the eigen values of factors and components decreases as the factor or component number increases. Report 'increase' otherwise.": "decrease"
|
| 332 |
+
}
|
| 333 |
+
],
|
| 334 |
+
"capsule_doi": "https://doi.org/10.1016/j.landusepol.2019.05.010"
|
| 335 |
+
},
|
| 336 |
+
{
|
| 337 |
+
"field": "Medical Sciences",
|
| 338 |
+
"language": "Python",
|
| 339 |
+
"capsule_title": "Diagnosis of epilepsy based on EEG",
|
| 340 |
+
"capsule_id": "capsule-6746514",
|
| 341 |
+
"task_prompt": "Run 'NewData_ML_Kfold.py'. Then, run all python files starting with \"fig_\" in the folder.",
|
| 342 |
+
"results": [
|
| 343 |
+
{
|
| 344 |
+
"fig For dataset 1, report the score (%) for the GRU classifier for ACC.": 92.76,
|
| 345 |
+
"fig For dataset 1, report the score (%) for the SGRU classifier for ACC.": 97.33,
|
| 346 |
+
"fig Report the count of Class 3.": 2300
|
| 347 |
+
},
|
| 348 |
+
{
|
| 349 |
+
"fig For dataset 1, report the score (%) for the GRU classifier for ACC.": 92.76,
|
| 350 |
+
"fig For dataset 1, report the score (%) for the SGRU classifier for ACC.": 97.33,
|
| 351 |
+
"fig Report the count of Class 3.": 2300
|
| 352 |
+
},
|
| 353 |
+
{
|
| 354 |
+
"fig For dataset 1, report the score (%) for the GRU classifier for ACC.": 92.76,
|
| 355 |
+
"fig For dataset 1, report the score (%) for the SGRU classifier for ACC.": 97.33,
|
| 356 |
+
"fig Report the count of Class 3.": 2300
|
| 357 |
+
}
|
| 358 |
+
],
|
| 359 |
+
"capsule_doi": "https://doi.org/10.24433/CO.3019596.v2"
|
| 360 |
+
},
|
| 361 |
+
{
|
| 362 |
+
"field": "Medical Sciences",
|
| 363 |
+
"language": "R",
|
| 364 |
+
"capsule_title": "Measuring the effects of exercise in neuromuscular disorders: a systematic review and meta-analyses",
|
| 365 |
+
"capsule_id": "capsule-1683542",
|
| 366 |
+
"task_prompt": "Export the following R default packages: datasets,utils,grDevices,graphics,stats,methods. Then run 'main.R'.",
|
| 367 |
+
"results": [
|
| 368 |
+
{
|
| 369 |
+
"fig From Figure 2, report the Observed SMD for Bankole et al. 2016. Ignore the confidence interval.": 0.5,
|
| 370 |
+
"fig From Figure 12, report the Observed SMD for Jeppesen et al. 2006. Ignore the confidence interval.": 0.28
|
| 371 |
+
},
|
| 372 |
+
{
|
| 373 |
+
"fig From Figure 2, report the Observed SMD for Bankole et al. 2016. Ignore the confidence interval.": 0.5,
|
| 374 |
+
"fig From Figure 12, report the Observed SMD for Jeppesen et al. 2006. Ignore the confidence interval.": 0.28
|
| 375 |
+
},
|
| 376 |
+
{
|
| 377 |
+
"fig From Figure 2, report the Observed SMD for Bankole et al. 2016. Ignore the confidence interval.": 0.5,
|
| 378 |
+
"fig From Figure 12, report the Observed SMD for Jeppesen et al. 2006. Ignore the confidence interval.": 0.28
|
| 379 |
+
}
|
| 380 |
+
],
|
| 381 |
+
"capsule_doi": "https://doi.org/10.24433/CO.9997621.v2"
|
| 382 |
+
},
|
| 383 |
+
{
|
| 384 |
+
"field": "Computer Science",
|
| 385 |
+
"language": "Python",
|
| 386 |
+
"capsule_title": "PyTorch-based implementation of label-aware graph representation for multi-class trajectory prediction",
|
| 387 |
+
"capsule_id": "capsule-5286757",
|
| 388 |
+
"task_prompt": "Run 'train_2D3D.py' and train on the 2D traffic prediction",
|
| 389 |
+
"results": [
|
| 390 |
+
{
|
| 391 |
+
"Report the train loss after training the final epoch (epoch 9).": 0.04598272387846722
|
| 392 |
+
},
|
| 393 |
+
{
|
| 394 |
+
"Report the train loss after training the final epoch (epoch 9).": 0.05381510184042584
|
| 395 |
+
},
|
| 396 |
+
{
|
| 397 |
+
"Report the train loss after training the final epoch (epoch 9).": 0.0502882808202249
|
| 398 |
+
}
|
| 399 |
+
],
|
| 400 |
+
"capsule_doi": "https://doi.org/10.24433/CO.8913413.v1"
|
| 401 |
+
},
|
| 402 |
+
{
|
| 403 |
+
"field": "Computer Science",
|
| 404 |
+
"language": "Python",
|
| 405 |
+
"capsule_title": "Dual Attention-Based Federated Learning for Wireless Traffic Prediction",
|
| 406 |
+
"capsule_id": "capsule-4884085",
|
| 407 |
+
"task_prompt": "Run 'fed_dual_att.py'",
|
| 408 |
+
"results": [
|
| 409 |
+
{
|
| 410 |
+
"Report the MSE for the file trento.h5.": 4.2629
|
| 411 |
+
},
|
| 412 |
+
{
|
| 413 |
+
"Report the MSE for the file trento.h5.": 4.2629
|
| 414 |
+
},
|
| 415 |
+
{
|
| 416 |
+
"Report the MSE for the file trento.h5.": 4.2629
|
| 417 |
+
}
|
| 418 |
+
],
|
| 419 |
+
"capsule_doi": "https://doi.org/10.24433/CO.4767521.v1"
|
| 420 |
+
},
|
| 421 |
+
{
|
| 422 |
+
"field": "Computer Science",
|
| 423 |
+
"language": "Python",
|
| 424 |
+
"capsule_title": "CULP: Classification Using Link Prediction",
|
| 425 |
+
"capsule_id": "capsule-6460826",
|
| 426 |
+
"task_prompt": "Run 'iris_sample.py', 'zoo_sample.py', and 'wine_sample.py'",
|
| 427 |
+
"results": [
|
| 428 |
+
{
|
| 429 |
+
"Report the CN prediction accuracy for the Iris dataset.": 100,
|
| 430 |
+
"Report the AA prediction acccuracy for the Iris dataset.": 100,
|
| 431 |
+
"Report the CN prediction acccuracy for the Zoo dataset.": 100,
|
| 432 |
+
"Report the AA prediction acccuracy for the Zoo dataset.": 100,
|
| 433 |
+
"Report the CN prediction acccuracy for the Wine dataset.": 97.22,
|
| 434 |
+
"Report the AA prediction acccuracy for the Wine dataset.": 97.22
|
| 435 |
+
},
|
| 436 |
+
{
|
| 437 |
+
"Report the CN prediction accuracy for the Iris dataset.": 100,
|
| 438 |
+
"Report the AA prediction acccuracy for the Iris dataset.": 100,
|
| 439 |
+
"Report the CN prediction acccuracy for the Zoo dataset.": 100,
|
| 440 |
+
"Report the AA prediction acccuracy for the Zoo dataset.": 100,
|
| 441 |
+
"Report the CN prediction acccuracy for the Wine dataset.": 97.22,
|
| 442 |
+
"Report the AA prediction acccuracy for the Wine dataset.": 97.22
|
| 443 |
+
},
|
| 444 |
+
{
|
| 445 |
+
"Report the CN prediction accuracy for the Iris dataset.": 100,
|
| 446 |
+
"Report the AA prediction acccuracy for the Iris dataset.": 100,
|
| 447 |
+
"Report the CN prediction acccuracy for the Zoo dataset.": 100,
|
| 448 |
+
"Report the AA prediction acccuracy for the Zoo dataset.": 100,
|
| 449 |
+
"Report the CN prediction acccuracy for the Wine dataset.": 97.22,
|
| 450 |
+
"Report the AA prediction acccuracy for the Wine dataset.": 97.22
|
| 451 |
+
}
|
| 452 |
+
],
|
| 453 |
+
"capsule_doi": "https://doi.org/10.24433/CO.0609cc4f-8b95-4d94-8fd0-9456d262b3a5"
|
| 454 |
+
},
|
| 455 |
+
{
|
| 456 |
+
"field": "Computer Science",
|
| 457 |
+
"language": "Python",
|
| 458 |
+
"capsule_title": "Multi-Label Classification via Adaptive Resonance Theory-Based Clustering",
|
| 459 |
+
"capsule_id": "capsule-4098236",
|
| 460 |
+
"task_prompt": "Run 'mainMLCA.py'.",
|
| 461 |
+
"results": [
|
| 462 |
+
{
|
| 463 |
+
"Report the exact match of the classification.": 0.27338983050847454,
|
| 464 |
+
"Report the hamming loss of the classification.": 0.2262241054613936
|
| 465 |
+
},
|
| 466 |
+
{
|
| 467 |
+
"Report the exact match of the classification.": 0.27338983050847454,
|
| 468 |
+
"Report the hamming loss of the classification.": 0.2262241054613936
|
| 469 |
+
},
|
| 470 |
+
{
|
| 471 |
+
"Report the exact match of the classification.": 0.27338983050847454,
|
| 472 |
+
"Report the hamming loss of the classification.": 0.2262241054613936
|
| 473 |
+
}
|
| 474 |
+
],
|
| 475 |
+
"capsule_doi": "https://doi.org/10.24433/CO.1722889.v2"
|
| 476 |
+
},
|
| 477 |
+
{
|
| 478 |
+
"field": "Computer Science",
|
| 479 |
+
"language": "Python",
|
| 480 |
+
"capsule_title": "ExPSO Package: Exponential Particle Swarm Optimization for Global Optimization",
|
| 481 |
+
"capsule_id": "capsule-5975162",
|
| 482 |
+
"task_prompt": "Run 'ExPSOWithClassicalBenchmark02.py'.",
|
| 483 |
+
"results": [
|
| 484 |
+
{
|
| 485 |
+
"Report the mean metric from the output.": 4.440892098500626e-16,
|
| 486 |
+
"Report the Avg FES from the output.": 96.7741935483871
|
| 487 |
+
},
|
| 488 |
+
{
|
| 489 |
+
"Report the mean metric from the output.": 4.440892098500626e-16,
|
| 490 |
+
"Report the Avg FES from the output.": 96.7741935483871
|
| 491 |
+
},
|
| 492 |
+
{
|
| 493 |
+
"Report the mean metric from the output.": 4.440892098500626e-16,
|
| 494 |
+
"Report the Avg FES from the output.": 96.7741935483871
|
| 495 |
+
}
|
| 496 |
+
],
|
| 497 |
+
"capsule_doi": "https://doi.org/10.24433/CO.9863420.v1"
|
| 498 |
+
},
|
| 499 |
+
{
|
| 500 |
+
"field": "Computer Science",
|
| 501 |
+
"language": "Python",
|
| 502 |
+
"capsule_title": "Linked Dynamic Graph CNN: Learning through Point Cloud by Linking Hierarchical Features",
|
| 503 |
+
"capsule_id": "capsule-0220918",
|
| 504 |
+
"task_prompt": "Run 'evaluate.py'. Unzip ../data/shapenetcore_partanno_v0.zip into the ../data directory. Run 'part_seg/test.py'.",
|
| 505 |
+
"results": [
|
| 506 |
+
{
|
| 507 |
+
"Report the eval mean loss from the classification.": 1.469021,
|
| 508 |
+
"Report the eval accuracy from the classification.": 0.931818
|
| 509 |
+
},
|
| 510 |
+
{
|
| 511 |
+
"Report the eval mean loss from the classification.": 1.469021,
|
| 512 |
+
"Report the eval accuracy from the classification.": 0.931818
|
| 513 |
+
},
|
| 514 |
+
{
|
| 515 |
+
"Report the eval mean loss from the classification.": 1.469021,
|
| 516 |
+
"Report the eval accuracy from the classification.": 0.931818
|
| 517 |
+
}
|
| 518 |
+
],
|
| 519 |
+
"capsule_doi": "https://doi.org/10.24433/CO.1730466.v1"
|
| 520 |
+
},
|
| 521 |
+
{
|
| 522 |
+
"field": "Computer Science",
|
| 523 |
+
"language": "Python",
|
| 524 |
+
"capsule_title": "Code for paper Graph Neural Networks for Individual Treatment Effect Estimation",
|
| 525 |
+
"capsule_id": "capsule-4645832",
|
| 526 |
+
"task_prompt": "Run 'main_hyper.py'.",
|
| 527 |
+
"results": [
|
| 528 |
+
{
|
| 529 |
+
"Report the test mean of the model.": 0.3470596925303306
|
| 530 |
+
},
|
| 531 |
+
{
|
| 532 |
+
"Report the test mean of the model.": 0.3470596925303306
|
| 533 |
+
},
|
| 534 |
+
{
|
| 535 |
+
"Report the test mean of the model.": 0.3470596925303306
|
| 536 |
+
}
|
| 537 |
+
],
|
| 538 |
+
"capsule_doi": "https://doi.org/10.24433/CO.3379007.v1"
|
| 539 |
+
},
|
| 540 |
+
{
|
| 541 |
+
"field": "Computer Science",
|
| 542 |
+
"language": "Python",
|
| 543 |
+
"capsule_title": "Mining Emerging Fuzzy-Temporal Gradual Patterns [BorderT-GRAANK]",
|
| 544 |
+
"capsule_id": "capsule-2011424",
|
| 545 |
+
"task_prompt": "Run 'algorithms/border_tgraank.py'.",
|
| 546 |
+
"results": [
|
| 547 |
+
{
|
| 548 |
+
"Report the number of FtGEPs found.": 17
|
| 549 |
+
},
|
| 550 |
+
{
|
| 551 |
+
"Report the number of FtGEPs found.": 17
|
| 552 |
+
},
|
| 553 |
+
{
|
| 554 |
+
"Report the number of FtGEPs found.": 17
|
| 555 |
+
}
|
| 556 |
+
],
|
| 557 |
+
"capsule_doi": "https://doi.org/10.24433/CO.7826231.v1"
|
| 558 |
+
},
|
| 559 |
+
{
|
| 560 |
+
"field": "Computer Science",
|
| 561 |
+
"language": "Python",
|
| 562 |
+
"capsule_title": "SybilFlyover: Heterogeneous Graph-Based Fake Account Detection Model on Social Networks",
|
| 563 |
+
"capsule_id": "capsule-3249574",
|
| 564 |
+
"task_prompt": "Run 'sybilflyover_model.py '.",
|
| 565 |
+
"results": [
|
| 566 |
+
{
|
| 567 |
+
"Report the F1-score after epoch 200.": 0.94743
|
| 568 |
+
},
|
| 569 |
+
{
|
| 570 |
+
"Report the F1-score after epoch 200.": 0.95698
|
| 571 |
+
},
|
| 572 |
+
{
|
| 573 |
+
"Report the F1-score after epoch 200.": 0.99188
|
| 574 |
+
}
|
| 575 |
+
],
|
| 576 |
+
"capsule_doi": "https://doi.org/10.24433/CO.9860846.v1"
|
| 577 |
+
},
|
| 578 |
+
{
|
| 579 |
+
"field": "Social Sciences",
|
| 580 |
+
"language": "R",
|
| 581 |
+
"capsule_title": "A Standard for the Scholarly Citation of Archaeological Data",
|
| 582 |
+
"capsule_id": "capsule-5777882",
|
| 583 |
+
"task_prompt": "Run the paper.Rmd file using Rscript and as an HTML in the \"../results\" folder. Set clean to 'TRUE'.",
|
| 584 |
+
"results": [
|
| 585 |
+
{
|
| 586 |
+
"fig Report the name of the license with the greatest number of DOIs.": "ADS",
|
| 587 |
+
"fig Report the name of the language (the abbreviation, as presented in the plot) with the least number of DOIs.": "it"
|
| 588 |
+
},
|
| 589 |
+
{
|
| 590 |
+
"fig Report the name of the license with the greatest number of DOIs.": "ADS",
|
| 591 |
+
"fig Report the name of the language (the abbreviation, as presented in the plot) with the least number of DOIs.": "it"
|
| 592 |
+
},
|
| 593 |
+
{
|
| 594 |
+
"fig Report the name of the license with the greatest number of DOIs.": "ADS",
|
| 595 |
+
"fig Report the name of the language (the abbreviation, as presented in the plot) with the least number of DOIs.": "it"
|
| 596 |
+
}
|
| 597 |
+
],
|
| 598 |
+
"capsule_doi": "https://doi.org/10.24433/CO.ca12b3f0-55a2-4eba-9687-168c8281e535"
|
| 599 |
+
},
|
| 600 |
+
{
|
| 601 |
+
"field": "Computer Science",
|
| 602 |
+
"language": "Python",
|
| 603 |
+
"capsule_title": "Replication files for Neurons Learn by Predicting Future Activity",
|
| 604 |
+
"capsule_id": "capsule-9370340",
|
| 605 |
+
"task_prompt": "Run 'CHL_clamped.py'.",
|
| 606 |
+
"results": [
|
| 607 |
+
{
|
| 608 |
+
"Report the accuracy for testing after epoch 3.": 0.86289996
|
| 609 |
+
},
|
| 610 |
+
{
|
| 611 |
+
"Report the accuracy for testing after epoch 3.": 0.8885
|
| 612 |
+
},
|
| 613 |
+
{
|
| 614 |
+
"Report the accuracy for testing after epoch 3.": 0.8803
|
| 615 |
+
}
|
| 616 |
+
],
|
| 617 |
+
"capsule_doi": "https://doi.org/10.24433/CO.9801818.v1"
|
| 618 |
+
},
|
| 619 |
+
{
|
| 620 |
+
"field": "Social Sciences",
|
| 621 |
+
"language": "Python",
|
| 622 |
+
"capsule_title": "Less Annotating, More Classifying: Addressing the Data Scarcity Issue of Supervised Machine Learning with Deep Transfer Learning and BERT-NLI",
|
| 623 |
+
"capsule_id": "capsule-4807644",
|
| 624 |
+
"task_prompt": "Run 'data-analysis-viz.py' and 'appendix.py'",
|
| 625 |
+
"results": [
|
| 626 |
+
{
|
| 627 |
+
"fig Report the name of the model that has the highest aggregate F1 Macro score for 500 random traning samples.": "BERT-NLI",
|
| 628 |
+
"fig Report the name of the model that has the lowest aggregate F1 Macro score for 500 random traning samples.": "majority baseline"
|
| 629 |
+
},
|
| 630 |
+
{
|
| 631 |
+
"fig Report the name of the model that has the highest aggregate F1 Macro score for 500 random traning samples.": "BERT-NLI",
|
| 632 |
+
"fig Report the name of the model that has the lowest aggregate F1 Macro score for 500 random traning samples.": "majority baseline"
|
| 633 |
+
},
|
| 634 |
+
{
|
| 635 |
+
"fig Report the name of the model that has the highest aggregate F1 Macro score for 500 random traning samples.": "BERT-NLI",
|
| 636 |
+
"fig Report the name of the model that has the lowest aggregate F1 Macro score for 500 random traning samples.": "majority baseline"
|
| 637 |
+
}
|
| 638 |
+
],
|
| 639 |
+
"capsule_doi": "https://doi.org/10.24433/CO.5414009.v2"
|
| 640 |
+
},
|
| 641 |
+
{
|
| 642 |
+
"field": "Social Sciences",
|
| 643 |
+
"language": "R",
|
| 644 |
+
"capsule_title": "Reducing meat and animal product consumption: what works?",
|
| 645 |
+
"capsule_id": "capsule-1906954",
|
| 646 |
+
"task_prompt": "Run ''./vegan-meta-pap.Rmd' and './vegan-meta.Rmd' using Rscript and render them as html. Store the output in ../results.",
|
| 647 |
+
"results": [
|
| 648 |
+
{
|
| 649 |
+
"Report the Delta value for Italy.": 0.459,
|
| 650 |
+
"Report the Delta value for adults.": 0.092
|
| 651 |
+
},
|
| 652 |
+
{
|
| 653 |
+
"Report the Delta value for Italy.": 0.459,
|
| 654 |
+
"Report the Delta value for adults.": 0.092
|
| 655 |
+
},
|
| 656 |
+
{
|
| 657 |
+
"Report the Delta value for Italy.": 0.459,
|
| 658 |
+
"Report the Delta value for adults.": 0.092
|
| 659 |
+
}
|
| 660 |
+
],
|
| 661 |
+
"capsule_doi": "https://doi.org/10.24433/CO.6020578.v1"
|
| 662 |
+
},
|
| 663 |
+
{
|
| 664 |
+
"field": "Social Sciences",
|
| 665 |
+
"language": "R",
|
| 666 |
+
"capsule_title": "Best Practices in Supervised Machine Learning: A Tutorial for Psychologists",
|
| 667 |
+
"capsule_id": "capsule-9348218",
|
| 668 |
+
"task_prompt": "Run manuscript.Rmd using Rscript and render it as a pdf. Record package information as sessionInfo_manuscript.txt. Clear all newly created files in /code between runs. Run electronic_supplemental_material.Rmd using Rscript and render it as a pdf. Record package information as sessionInfo_electronic_supplemental_material.txt. Clear all newly created files in /code between runs. Save all output for both parts in ../results.",
|
| 669 |
+
"results": [
|
| 670 |
+
{
|
| 671 |
+
"fig From Figure 3 panel A, report the label of the green line.": "flexibility too low",
|
| 672 |
+
"fig From Figure 1, report the numerical value of N for example 1 (the first row).": 12
|
| 673 |
+
},
|
| 674 |
+
{
|
| 675 |
+
"fig From Figure 3 panel A, report the label of the green line.": "flexibility too low",
|
| 676 |
+
"fig From Figure 1, report the numerical value of N for example 1 (the first row).": 12
|
| 677 |
+
},
|
| 678 |
+
{
|
| 679 |
+
"fig From Figure 3 panel A, report the label of the green line.": "flexibility too low",
|
| 680 |
+
"fig From Figure 1, report the numerical value of N for example 1 (the first row).": 12
|
| 681 |
+
}
|
| 682 |
+
],
|
| 683 |
+
"capsule_doi": "https://doi.org/10.24433/CO.5687964.v1"
|
| 684 |
+
},
|
| 685 |
+
{
|
| 686 |
+
"field": "Computer Science",
|
| 687 |
+
"language": "Python",
|
| 688 |
+
"capsule_title": "A University Admission Prediction System using Stacked Ensemble Learning",
|
| 689 |
+
"capsule_id": "capsule-0238624",
|
| 690 |
+
"task_prompt": "Run 'ensemble.py'.",
|
| 691 |
+
"results": [
|
| 692 |
+
{
|
| 693 |
+
"Report the macro avg precision from the classification report.": 0.88,
|
| 694 |
+
"Report the macro avg recall from the classification report.": 0.88
|
| 695 |
+
},
|
| 696 |
+
{
|
| 697 |
+
"Report the macro avg precision from the classification report.": 0.87,
|
| 698 |
+
"Report the macro avg recall from the classification report.": 0.87
|
| 699 |
+
},
|
| 700 |
+
{
|
| 701 |
+
"Report the macro avg precision from the classification report.": 0.88,
|
| 702 |
+
"Report the macro avg recall from the classification report.": 0.88
|
| 703 |
+
}
|
| 704 |
+
],
|
| 705 |
+
"capsule_doi": "https://doi.org/10.24433/CO.1531178.v1"
|
| 706 |
+
},
|
| 707 |
+
{
|
| 708 |
+
"field": "Computer Science",
|
| 709 |
+
"language": "Python",
|
| 710 |
+
"capsule_title": "VisGIN: Visibility Graph Neural Network on One-Dimensional Data for Biometric Authentication",
|
| 711 |
+
"capsule_id": "capsule-3272782",
|
| 712 |
+
"task_prompt": "Run 'VisGIN.py'",
|
| 713 |
+
"results": [
|
| 714 |
+
{
|
| 715 |
+
"Report Average accuracy for the VisGIN model.": 0.995,
|
| 716 |
+
"Report Average FNMR for the VisGIN model.": 0.01,
|
| 717 |
+
"Report Average FMR for the VisGIN model.": 0.0
|
| 718 |
+
},
|
| 719 |
+
{
|
| 720 |
+
"Report Average accuracy for the VisGIN model.": 1.0,
|
| 721 |
+
"Report Average FNMR for the VisGIN model.": 0.0,
|
| 722 |
+
"Report Average FMR for the VisGIN model.": 0.0
|
| 723 |
+
},
|
| 724 |
+
{
|
| 725 |
+
"Report Average accuracy for the VisGIN model.": 0.99,
|
| 726 |
+
"Report Average FNMR for the VisGIN model.": 0.018,
|
| 727 |
+
"Report Average FMR for the VisGIN model.": 0.0
|
| 728 |
+
}
|
| 729 |
+
],
|
| 730 |
+
"capsule_doi": "https://doi.org/10.24433/CO.3350600.v1"
|
| 731 |
+
},
|
| 732 |
+
{
|
| 733 |
+
"field": "Social Sciences",
|
| 734 |
+
"language": "R",
|
| 735 |
+
"capsule_title": "GazeR-Pupil and Gaze Processing",
|
| 736 |
+
"capsule_id": "capsule-4600160",
|
| 737 |
+
"task_prompt": "Run \"Gazer_walkthrough.R\" using Rscript.",
|
| 738 |
+
"results": [
|
| 739 |
+
{
|
| 740 |
+
"fig Report the name of the script with the lowest pupil dilation at 1500 m/s.": "print"
|
| 741 |
+
},
|
| 742 |
+
{
|
| 743 |
+
"fig Report the name of the script with the lowest pupil dilation at 1500 m/s.": "print"
|
| 744 |
+
},
|
| 745 |
+
{
|
| 746 |
+
"fig Report the name of the script with the lowest pupil dilation at 1500 m/s.": "print"
|
| 747 |
+
}
|
| 748 |
+
],
|
| 749 |
+
"capsule_doi": "https://doi.org/10.24433/CO.0149895.v2"
|
| 750 |
+
},
|
| 751 |
+
{
|
| 752 |
+
"field": "Social Sciences",
|
| 753 |
+
"language": "R",
|
| 754 |
+
"capsule_title": "Code for: Self-esteem, relationship threat, and dependency regulation: Independent replication of Murray, Rose, Bellavia, Holmes, and Kusche (2002) Study 3",
|
| 755 |
+
"capsule_id": "capsule-1324693",
|
| 756 |
+
"task_prompt": "Run 'main.Rmd' using Rscript and render it as as html to the output directory ../results",
|
| 757 |
+
"results": [
|
| 758 |
+
{
|
| 759 |
+
"fig Report the y-axis label of the subplot measuring Normal Q-Q": "Standardized residuals",
|
| 760 |
+
"fig Report the y-axis label of fig 1.": "Scores on Manipulation Check Index"
|
| 761 |
+
},
|
| 762 |
+
{
|
| 763 |
+
"fig Report the y-axis label of the subplot measuring Normal Q-Q": "Standardized residuals",
|
| 764 |
+
"fig Report the y-axis label of fig 1.": "Scores on Manipulation Check Index"
|
| 765 |
+
},
|
| 766 |
+
{
|
| 767 |
+
"fig Report the y-axis label of the subplot measuring Normal Q-Q": "Standardized residuals",
|
| 768 |
+
"fig Report the y-axis label of fig 1.": "Scores on Manipulation Check Index"
|
| 769 |
+
}
|
| 770 |
+
],
|
| 771 |
+
"capsule_doi": "https://doi.org/10.24433/CO.0432690.v2"
|
| 772 |
+
},
|
| 773 |
+
{
|
| 774 |
+
"field": "Social Sciences",
|
| 775 |
+
"language": "R",
|
| 776 |
+
"capsule_title": "Replication Material for \"The Subconscious Effect of Subtle Media Bias on Perceptions of Terrorism\" appearing in American Politics Research (APR)",
|
| 777 |
+
"capsule_id": "capsule-6133093",
|
| 778 |
+
"task_prompt": "Run 'mediabiasreplication.Rmd' using Rscript and render it as html. Store the output in the ../results directory. Set clean to 'TRUE'.",
|
| 779 |
+
"results": [
|
| 780 |
+
{
|
| 781 |
+
"Report the estimate for the Label2 attribute and Attackers level in the Average Marginal Component Effects (AMCE) table of model6_c": 0.0685169
|
| 782 |
+
},
|
| 783 |
+
{
|
| 784 |
+
"Report the estimate for the Label2 attribute and Attackers level in the Average Marginal Component Effects (AMCE) table of model6_c": 0.0685169
|
| 785 |
+
},
|
| 786 |
+
{
|
| 787 |
+
"Report the estimate for the Label2 attribute and Attackers level in the Average Marginal Component Effects (AMCE) table of model6_c": 0.0685169
|
| 788 |
+
}
|
| 789 |
+
],
|
| 790 |
+
"capsule_doi": "https://doi.org/10.24433/CO.0762621.v1"
|
| 791 |
+
},
|
| 792 |
+
{
|
| 793 |
+
"field": "Computer Science",
|
| 794 |
+
"language": "Python",
|
| 795 |
+
"capsule_title": "GERNERMED Named Entity Recognizer",
|
| 796 |
+
"capsule_id": "capsule-0396930",
|
| 797 |
+
"task_prompt": "Set up the GERNERMED component package using pip install and the python3 -m flag with the file './de_GERNERMED-1.0.0.tar.gz'. Using the python3 -m flag, and spacy, evaluate the model '/data/gernermed_pipeline' with the data path '/data/ner_medical.test.spacy' and the output directory 'results/eval_scores.json'. Run the annotation demo '/code/example_simple.py' and pipe the output to '/results/annotation_example.txt'. ",
|
| 798 |
+
"results": [
|
| 799 |
+
{
|
| 800 |
+
"Report the f1 score of the 'duration' entity tag (out of 1).": 0.59375,
|
| 801 |
+
"Report the precision of the 'drug' entity tag (out of 1).": 0.6733021077
|
| 802 |
+
},
|
| 803 |
+
{
|
| 804 |
+
"Report the f1 score of the 'duration' entity tag (out of 1).": 0.59375,
|
| 805 |
+
"Report the precision of the 'drug' entity tag (out of 1).": 0.6733021077
|
| 806 |
+
},
|
| 807 |
+
{
|
| 808 |
+
"Report the f1 score of the 'duration' entity tag (out of 1).": 0.59375,
|
| 809 |
+
"Report the precision of the 'drug' entity tag (out of 1).": 0.6733021077
|
| 810 |
+
}
|
| 811 |
+
],
|
| 812 |
+
"capsule_doi": "https://doi.org/10.24433/CO.9292630.v1"
|
| 813 |
+
},
|
| 814 |
+
{
|
| 815 |
+
"field": "Social Sciences",
|
| 816 |
+
"language": "R",
|
| 817 |
+
"capsule_title": "Integrating Data Across Misaligned Spatial Units",
|
| 818 |
+
"capsule_id": "capsule-7981862",
|
| 819 |
+
"task_prompt": "Run 'master.R' using Rscript.",
|
| 820 |
+
"results": [
|
| 821 |
+
{
|
| 822 |
+
"fig Report the middle decile (50%) median RMSE for the Monte Carlo results by CoS algorithm.": 0.64
|
| 823 |
+
},
|
| 824 |
+
{
|
| 825 |
+
"fig Report the middle decile (50%) median RMSE for the Monte Carlo results by CoS algorithm.": 0.64
|
| 826 |
+
},
|
| 827 |
+
{
|
| 828 |
+
"fig Report the middle decile (50%) median RMSE for the Monte Carlo results by CoS algorithm.": 0.64
|
| 829 |
+
}
|
| 830 |
+
],
|
| 831 |
+
"capsule_doi": "https://doi.org/10.24433/CO.9257130.v1"
|
| 832 |
+
},
|
| 833 |
+
{
|
| 834 |
+
"field": "Social Sciences",
|
| 835 |
+
"language": "R",
|
| 836 |
+
"capsule_title": "A Delphi study to strengthen research methods training in undergraduate psychology programmes",
|
| 837 |
+
"capsule_id": "capsule-2061060",
|
| 838 |
+
"task_prompt": "Run 'manuscript.Rmd' using Rscript and render it as a pdf. Store the results in ../results. Set clean to 'TRUE'.",
|
| 839 |
+
"results": [
|
| 840 |
+
{
|
| 841 |
+
"fig From supplementary table 2, report the % reaching consensus for the quant domain.": 50
|
| 842 |
+
},
|
| 843 |
+
{
|
| 844 |
+
"fig From supplementary table 2, report the % reaching consensus for the quant domain.": 50
|
| 845 |
+
},
|
| 846 |
+
{
|
| 847 |
+
"fig From supplementary table 2, report the % reaching consensus for the quant domain.": 50
|
| 848 |
+
}
|
| 849 |
+
],
|
| 850 |
+
"capsule_doi": "https://doi.org/10.24433/CO.0483372.v1"
|
| 851 |
+
},
|
| 852 |
+
{
|
| 853 |
+
"field": "Computer Science",
|
| 854 |
+
"language": "Python",
|
| 855 |
+
"capsule_title": "WABL Method as a Universal Defuzzifier in the Fuzzy Gradient Boosting Regression Model",
|
| 856 |
+
"capsule_id": "capsule-0940461",
|
| 857 |
+
"task_prompt": "Execute 'FGBR_OC.ipynb'. Save the results in html format in ../results. For all the runs, disable the cell execution timeout and allow errors.",
|
| 858 |
+
"results": [
|
| 859 |
+
{
|
| 860 |
+
"Report the best test R^2 value for c = 1.0.": 0.8259,
|
| 861 |
+
"Report the best test RMSE value for c = 1.0.": 0.2806
|
| 862 |
+
},
|
| 863 |
+
{
|
| 864 |
+
"Report the best test R^2 value for c = 1.0.": 0.8259,
|
| 865 |
+
"Report the best test RMSE value for c = 1.0.": 0.2806
|
| 866 |
+
},
|
| 867 |
+
{
|
| 868 |
+
"Report the best test R^2 value for c = 1.0.": 0.8259,
|
| 869 |
+
"Report the best test RMSE value for c = 1.0.": 0.2806
|
| 870 |
+
}
|
| 871 |
+
],
|
| 872 |
+
"capsule_doi": "https://doi.org/10.24433/CO.4576964.v1"
|
| 873 |
+
},
|
| 874 |
+
{
|
| 875 |
+
"field": "Medical Sciences",
|
| 876 |
+
"language": "Python",
|
| 877 |
+
"capsule_title": "DAPPER Leiomyosarcoma : Correlation and Survival Analysis of Radiomic, Microbiome and Clinical Data",
|
| 878 |
+
"capsule_id": "capsule-3894632",
|
| 879 |
+
"task_prompt": "Run 'dp_survival.Rmd' using Rscript and Render it as html. Store the output in ../results. Set clean to 'TRUE'. Also, run 'correlation.py'.",
|
| 880 |
+
"results": [
|
| 881 |
+
{
|
| 882 |
+
"Report the p value for Lesions.Contoured.": 0.12
|
| 883 |
+
},
|
| 884 |
+
{
|
| 885 |
+
"Report the p value for Lesions.Contoured.": 0.12
|
| 886 |
+
},
|
| 887 |
+
{
|
| 888 |
+
"Report the p value for Lesions.Contoured.": 0.12
|
| 889 |
+
}
|
| 890 |
+
],
|
| 891 |
+
"capsule_doi": "https://doi.org/10.24433/CO.2552952.v1"
|
| 892 |
+
},
|
| 893 |
+
{
|
| 894 |
+
"field": "Medical Sciences",
|
| 895 |
+
"language": "Python",
|
| 896 |
+
"capsule_title": "Metabolomic machine learning predictor for diagnosis and prognosis of gastric cancer",
|
| 897 |
+
"capsule_id": "capsule-5496369",
|
| 898 |
+
"task_prompt": "Execute GC-diagnosis-model/run.ipynb. Save the results in html format in ../results. Execute GC-prognosis-model/run.ipynb. Save the results in html format in ../results. For both runs, disable the cell execution timeout and allow errors.",
|
| 899 |
+
"results": [
|
| 900 |
+
{
|
| 901 |
+
"fig For the GC diagnosis model's AUROC curve of test data, report the Lasso AUROC of the test data.": 0.967,
|
| 902 |
+
"fig From the GC prognosis model's AUROC curve, report the Lasso AUROC of the test data.": 0.832
|
| 903 |
+
},
|
| 904 |
+
{
|
| 905 |
+
"fig For the GC diagnosis model's AUROC curve of test data, report the Lasso AUROC of the test data.": 0.967,
|
| 906 |
+
"fig From the GC prognosis model's AUROC curve, report the Lasso AUROC of the test data.": 0.832
|
| 907 |
+
},
|
| 908 |
+
{
|
| 909 |
+
"fig For the GC diagnosis model's AUROC curve of test data, report the Lasso AUROC of the test data.": 0.967,
|
| 910 |
+
"fig From the GC prognosis model's AUROC curve, report the Lasso AUROC of the test data.": 0.832
|
| 911 |
+
}
|
| 912 |
+
],
|
| 913 |
+
"capsule_doi": "https://doi.org/10.24433/CO.7015846.v1"
|
| 914 |
+
},
|
| 915 |
+
{
|
| 916 |
+
"field": "Social Sciences",
|
| 917 |
+
"language": "R",
|
| 918 |
+
"capsule_title": "Making a Difference: The Consequences of Electoral Experiments",
|
| 919 |
+
"capsule_id": "capsule-8912293",
|
| 920 |
+
"task_prompt": "Run '01_data_processing.R', '02_info_exps.R', '03_colorado_sim.R', '04_pap_analysis.R', and '05_existing_applications.R' using Rscript.",
|
| 921 |
+
"results": [
|
| 922 |
+
{
|
| 923 |
+
"fig Report the location of experiment with the higher proportion of 131 pre\u2212registered experiments in AEA and EGAP registries for the mobilization intervention class (ignore the n value).": "US",
|
| 924 |
+
"fig From Figure A5, report the y-axis label.": "Number of districts",
|
| 925 |
+
"fig From Figure A2, report the x-axis label of the first plot.": "Start of intervention"
|
| 926 |
+
},
|
| 927 |
+
{
|
| 928 |
+
"fig Report the location of experiment with the higher proportion of 131 pre\u2212registered experiments in AEA and EGAP registries for the mobilization intervention class (ignore the n value).": "US",
|
| 929 |
+
"fig From Figure A5, report the y-axis label.": "Number of districts",
|
| 930 |
+
"fig From Figure A2, report the x-axis label of the first plot.": "Start of intervention"
|
| 931 |
+
},
|
| 932 |
+
{
|
| 933 |
+
"fig Report the location of experiment with the higher proportion of 131 pre\u2212registered experiments in AEA and EGAP registries for the mobilization intervention class (ignore the n value).": "US",
|
| 934 |
+
"fig From Figure A5, report the y-axis label.": "Number of districts",
|
| 935 |
+
"fig From Figure A2, report the x-axis label of the first plot.": "Start of intervention"
|
| 936 |
+
}
|
| 937 |
+
],
|
| 938 |
+
"capsule_doi": "https://doi.org/10.24433/CO.7729631.v1"
|
| 939 |
+
},
|
| 940 |
+
{
|
| 941 |
+
"field": "Medical Sciences",
|
| 942 |
+
"language": "Python",
|
| 943 |
+
"capsule_title": "Super-Iterative Image Reconstruction for Tomography",
|
| 944 |
+
"capsule_id": "capsule-3497606",
|
| 945 |
+
"task_prompt": "Ignore python warnings. Run 'Super-Iterative.py'.",
|
| 946 |
+
"results": [
|
| 947 |
+
{
|
| 948 |
+
"fig Report which image type has the greatest noise at 100 iterations.": "High Resolution"
|
| 949 |
+
},
|
| 950 |
+
{
|
| 951 |
+
"fig Report which image type has the greatest noise at 100 iterations.": "High Resolution"
|
| 952 |
+
},
|
| 953 |
+
{
|
| 954 |
+
"fig Report which image type has the greatest noise at 100 iterations.": "High Resolution"
|
| 955 |
+
}
|
| 956 |
+
],
|
| 957 |
+
"capsule_doi": "https://doi.org/10.24433/CO.2947710.v2"
|
| 958 |
+
},
|
| 959 |
+
{
|
| 960 |
+
"field": "Medical Sciences",
|
| 961 |
+
"language": "Python",
|
| 962 |
+
"capsule_title": "Light fluence in skin for PDT light-dose planning",
|
| 963 |
+
"capsule_id": "capsule-7156696",
|
| 964 |
+
"task_prompt": "Execute all the .ipynb files in the ../code directory. Save the results in html format in ../results. For all the runs, disable the cell execution timeout and allow errors.",
|
| 965 |
+
"results": [
|
| 966 |
+
{
|
| 967 |
+
"fig From Figure 5A, report the name of the source with the lowest fluence rate at depth 1.": "Blue",
|
| 968 |
+
"fig From Figure 5B, report the name of the source with the highest effective fluence rate at depth 1.": "Red"
|
| 969 |
+
},
|
| 970 |
+
{
|
| 971 |
+
"fig From Figure 5A, report the name of the source with the lowest fluence rate at depth 1.": "Blue",
|
| 972 |
+
"fig From Figure 5B, report the name of the source with the highest effective fluence rate at depth 1.": "Red"
|
| 973 |
+
},
|
| 974 |
+
{
|
| 975 |
+
"fig From Figure 5A, report the name of the source with the lowest fluence rate at depth 1.": "Blue",
|
| 976 |
+
"fig From Figure 5B, report the name of the source with the highest effective fluence rate at depth 1.": "Red"
|
| 977 |
+
}
|
| 978 |
+
],
|
| 979 |
+
"capsule_doi": "https://doi.org/10.24433/CO.3b5e68fc-c3a0-44fd-bebb-95d60e08ce11.v3"
|
| 980 |
+
},
|
| 981 |
+
{
|
| 982 |
+
"field": "Social Sciences",
|
| 983 |
+
"language": "R",
|
| 984 |
+
"capsule_title": "Designing Studies and Evaluating Research Results: Type M and Type S Errors for Pearson Correlation Coefficient",
|
| 985 |
+
"capsule_id": "capsule-7935517",
|
| 986 |
+
"task_prompt": "Load the knitr library. Set the working directory to 'Documents/Paper_main/\u2018. Compile the pdf using knit with 'Paper_main.Rnw' as the input. Copy \u2018Paper_main.tex\u2019 to the ../results directory. Then, make the following directories: ../results/figure and ../results/screens. Copy all the .pdf files from \u2018Documents/Paper_main/figure/\u2018 into ../results/figure. Copy all the files from \u2018Documents/Paper_main/screens/\u2018 into ../results/screens/. Copy \u2018Paper_main.bib\u2019 and \u2018Paper_main.bbl\u2019 into ../results.",
|
| 987 |
+
"results": [
|
| 988 |
+
{
|
| 989 |
+
"fig From the plot sampling rho, report the rho value corresponding to the solid red line.": 0,
|
| 990 |
+
"fig Report the x-axis label of the plot measuring Cohen's d.": "Power"
|
| 991 |
+
},
|
| 992 |
+
{
|
| 993 |
+
"fig From the plot sampling rho, report the rho value corresponding to the solid red line.": 0,
|
| 994 |
+
"fig Report the x-axis label of the plot measuring Cohen's d.": "Power"
|
| 995 |
+
},
|
| 996 |
+
{
|
| 997 |
+
"fig From the plot sampling rho, report the rho value corresponding to the solid red line.": 0,
|
| 998 |
+
"fig Report the x-axis label of the plot measuring Cohen's d.": "Power"
|
| 999 |
+
}
|
| 1000 |
+
],
|
| 1001 |
+
"capsule_doi": "https://doi.org/10.24433/CO.8165442.v1"
|
| 1002 |
+
},
|
| 1003 |
+
{
|
| 1004 |
+
"field": "Medical Sciences",
|
| 1005 |
+
"language": "Python",
|
| 1006 |
+
"capsule_title": "Neural Network for Predicting Stroke Team Performance",
|
| 1007 |
+
"capsule_id": "capsule-3269870",
|
| 1008 |
+
"task_prompt": "Run 'nn.py' and 'predict.py'.",
|
| 1009 |
+
"results": [
|
| 1010 |
+
{
|
| 1011 |
+
"Report the percentage accuracy of the result.": 60,
|
| 1012 |
+
"Report the percentage precision of the result.": 62,
|
| 1013 |
+
"fig Report the y-axis label of the training plot.": "Cost"
|
| 1014 |
+
},
|
| 1015 |
+
{
|
| 1016 |
+
"Report the percentage accuracy of the result.": 60,
|
| 1017 |
+
"Report the percentage precision of the result.": 62,
|
| 1018 |
+
"fig Report the y-axis label of the training plot.": "Cost"
|
| 1019 |
+
},
|
| 1020 |
+
{
|
| 1021 |
+
"Report the percentage accuracy of the result.": 60,
|
| 1022 |
+
"Report the percentage precision of the result.": 62,
|
| 1023 |
+
"fig Report the y-axis label of the training plot.": "Cost"
|
| 1024 |
+
}
|
| 1025 |
+
],
|
| 1026 |
+
"capsule_doi": "https://doi.org/10.24433/CO.e78bbbad-a26f-49ec-9eae-11d549011e17"
|
| 1027 |
+
}
|
| 1028 |
+
]
|