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README.md ADDED
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+ ---
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+ license: cc-by-4.0
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+ pretty_name: V33DA
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+ task_categories:
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+ - audio-classification
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+ - video-classification
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+ tags:
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+ - animal-behavior
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+ - bioacoustics
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+ - bird-vocalization
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+ - multimodal
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+ - 3d-pose
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+ - localization
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+ - attribution
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+ - radio-telemetry
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+ - accelerometer
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+ size_categories:
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+ - 10K<n<100K
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+ configs:
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+ - config_name: default
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+ data_files:
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+ - split: train
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+ path: v33da-*.parquet
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+ ---
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+
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+ # V33DA: Benchmarking Vocal Attribution in Freely-Behaving Zebra Finches
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+
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+ V33DA is a multimodal benchmark for vocal attribution and 3D vocal localization in small groups of freely behaving zebra finches recorded in the BirdPark aviary. Each released sample is a single vocalization event with synchronized microphone audio, video, 3D pose, radio telemetry, and the accelerometer-derived on-body verification signal used to establish the ground-truth caller label.
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+
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+ The dataset is designed so that caller labels do not reduce to the same room-acoustic attribution problem solved by the benchmark models. Instead, the release follows the paper’s extraction pipeline: candidate events are proposed from the body-mounted verification channel, manually reviewed, and then filtered by geometric and motion consistency before inclusion.
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+
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+ ## Paper Summary
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+
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+ Recordings were collected from groups of 3--4 zebra finches during natural social interactions. The sensing setup aligns the same event across:
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+
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+ - five cage microphones sampled at 24,414 Hz
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+ - three synchronized camera views
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+ - five 3D body keypoints per bird
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+ - 21 per-bird radio telemetry signals per frame
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+ - the raw accelerometer-derived vibration signal carried by each bird
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+
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+ The benchmark supports a task introduced in the paper:
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+
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+ 1. vocal attribution: identify which visible bird produced the vocalization
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+
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+ ## Modalities
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+
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+ Each parquet row corresponds to one released vocalization event and includes:
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+
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+ - `audio_path`: relative path to the multichannel cage-microphone WAV
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+ - `accelerometer_path`: relative path to the multichannel accelerometer WAV
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+ - `video_path`: relative path to the aligned composite MP4 clip
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+ - `keypoints_3d`: triangulated 3D body pose
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+ - `keypoints_2d_top`: 2D keypoints in the top-view image space
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+ - `keypoints_2d_back`: 2D keypoints in the back-view image space
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+ - `radio_*`: synchronized per-bird radio telemetry arrays
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+ - `bird_color`: color identity used as the source of truth for caller assignment
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+ - `vocalizer_idx`: index of the vocalizing bird
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+
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+ Media is stored as external files and referenced from parquet by path.
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+
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+ ## Labeling and Filtering
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+
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+ The paper’s released set is built from a reviewed candidate pool. After manual verification, samples are retained only if they satisfy the release filters:
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+
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+ - overlapping vocalizations removed
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+ - 3D-to-2D reprojection error `<= 40 px`
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+ - maximum frame-to-frame 2D displacement `<= 40 px`
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+ - no NaNs in released 3D or 2D keypoints
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+
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+ Color is the source of truth for the released vocalizer identity.
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+
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+ ## Release Contents
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+
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+ This standalone release contains:
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+
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+ - `v33da-*.parquet`: pooled parquet shards for the full release
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+ - `audio/`: multichannel microphone WAV files
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+ - `accelerometer/`: multichannel accelerometer WAV files
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+ - `clips/`: aligned composite MP4 clips
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+ - `calibrations/`: per-experiment camera calibration files
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+ - `explore.ipynb`: notebook for dataset exploration and reprojection
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+ - `metadata.json`: release schema and filter metadata
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+
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+ ## Dataset Size
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+
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+ - released samples: `33,625`
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+ - pooled parquet shards: `23`
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+ - experiments: `3`
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+ - individuals: `11`
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+
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+ Per-group counts in this standalone release:
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+
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+ - `juvExpBP01 / blue`: `5,735`
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+ - `juvExpBP01 / peach`: `2,277`
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+ - `juvExpBP01 / red`: `3,963`
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+ - `juvExpBP01 / white`: `4,244`
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+ - `juvExpBP02 / blue`: `4,923`
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+ - `juvExpBP02 / peach`: `4,589`
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+ - `juvExpBP02 / red`: `2,065`
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+ - `juvExpBP05 / brown`: `3,633`
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+ - `juvExpBP05 / purple`: `2,140`
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+ - `juvExpBP05 / yellow`: `56`
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+
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+ ## Using the Dataset
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+
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+ The canonical release format is the pooled `v33da-*.parquet` set. Each binary array column is serialized with `numpy.save`, so decoding is:
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+
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+ ```python
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+ import io
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+ import numpy as np
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+
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+ arr = np.load(io.BytesIO(raw_bytes))
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+ ```
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+
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+ The included `explore.ipynb` notebook shows how to:
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+
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+ - load parquet shards
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+ - inspect audio, accelerometer, video, pose, and radio
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+ - use the shipped camera calibrations to reproject 3D keypoints into 2D views
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+
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+ ## Limitations
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+
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+ As discussed in the paper, V33DA is collected in one aviary with one recording geometry across three experiments. Cross-experiment evaluation therefore combines bird-identity shift, group-composition shift, and recording-date shift. The released benchmark also excludes overlapping vocalizations and filters out samples with poor geometric consistency or excessive motion.
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+
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+ ## Citation
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+
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+ If you use this dataset, please cite the accompanying paper:
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+
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+ ```bibtex
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+ @inproceedings{basha2026v33da,
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+ title={V33DA: Benchmarking Vocal Attribution in Freely-Behaving Zebra Finches},
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+ author={Basha, Maris and Wang, Yuhang and Chen, Xiaoran and Cheng, Longbiao and Yapura, Luca and Salzmann, Mathieu and Hahnloser, Richard},
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+ booktitle={XXX},
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+ year={2026}
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+ }
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+ ```
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calibrations/README.md ADDED
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1
+ ---
2
+ license: mit
3
+ tags:
4
+ - zebra-finch
5
+ - camera-calibration
6
+ - birdpark
7
+ ---
8
+
9
+ # BirdPark Camera Calibration & Metadata
10
+
11
+ Camera intrinsics, extrinsics, and bird-color metadata for the BirdPark multi-view tracking setup (3 cameras: top, back, side).
12
+
13
+ ## Download
14
+
15
+ ```bash
16
+ pip install huggingface_hub
17
+ ```
18
+
19
+ ```python
20
+ from huggingface_hub import snapshot_download
21
+ snapshot_download("songbirdini/birdpark_calibration", local_dir="tracking/data")
22
+ ```
23
+
24
+ Or from the TCBI analysis project:
25
+
26
+ ```bash
27
+ python -m tracking.download_calibration
28
+ ```
29
+
30
+ ## Contents
31
+
32
+ | File | Description |
33
+ |------|-------------|
34
+ | `calibration_{view}.npz` | Camera intrinsic matrix (K) + distortion coefficients |
35
+ | `camera_pose_{view}.pkl` | Camera extrinsic rotation (rvec) + translation (tvec) |
36
+ | `metadata.csv` | Experiment -> bird ID -> backpack color mapping |
37
+
38
+ Views: `top` (1292x1292), `back` (2202x724), `side` (774x1292, rotated 90 degrees)
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+ Unnamed: 0,X(mm),Y(mm),Z(mm),Index,position
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+ 116.0,1155.238282612,235.988072442,1563.932180663,G,box
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+ ,855.0,1265.0,1266.0,,Mic1(roughly)
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+ ,1020.0,775.0,1266.0,,Mic2-right
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+ ,303.0,775.0,1266.0,,Mic3-left
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+ ,682.0,775.0,1060.0,,Mic4-back
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+ ,682.0,775.0,1434.0,,Mic5-door
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1
+ {
2
+ "cells": [
3
+ {
4
+ "cell_type": "markdown",
5
+ "metadata": {},
6
+ "source": [
7
+ "# v33da Dataset Explorer\n",
8
+ "\n",
9
+ "Standalone exploration notebook for `v33da`.\n",
10
+ "\n",
11
+ "This notebook mirrors the old `v33dl` dataset explorer style, but targets the standalone `v33da` package directly. It walks through:\n",
12
+ "\n",
13
+ "1. Loading pooled parquet shards\n",
14
+ "2. Picking a sample\n",
15
+ "3. Audio and accelerometer signals\n",
16
+ "4. Video clips\n",
17
+ "5. 3D pose and 2D keypoints\n",
18
+ "6. Camera calibration and reprojection\n",
19
+ "7. Radio telemetry"
20
+ ]
21
+ },
22
+ {
23
+ "cell_type": "markdown",
24
+ "metadata": {},
25
+ "source": [
26
+ "## 0. Setup\n",
27
+ "\n",
28
+ "If you already have the standalone dataset locally, just run the next cell. The notebook resolves the dataset root automatically."
29
+ ]
30
+ },
31
+ {
32
+ "cell_type": "code",
33
+ "execution_count": null,
34
+ "metadata": {},
35
+ "outputs": [],
36
+ "source": [
37
+ "from __future__ import annotations\n",
38
+ "\n",
39
+ "import io\n",
40
+ "import pickle\n",
41
+ "from pathlib import Path\n",
42
+ "\n",
43
+ "import cv2\n",
44
+ "import matplotlib.pyplot as plt\n",
45
+ "import numpy as np\n",
46
+ "import pyarrow.parquet as pq\n",
47
+ "import soundfile as sf\n",
48
+ "\n",
49
+ "R_ZUP = np.array([[1, 0, 0], [0, 0, -1], [0, 1, 0]], dtype=np.float64)\n",
50
+ "KEYPOINT_NAMES = [\"beak\", \"head\", \"backpack\", \"tailbe\", \"tailend\"]\n",
51
+ "RADIO_KEYS = [\n",
52
+ " \"frq\", \"thetaS\", \"thetaA\", \"thetaB\", \"thetaC\", \"thetaD\",\n",
53
+ " \"phiA\", \"phiB\", \"phiC\", \"phiD\", \"phiM\",\n",
54
+ " \"powRA\", \"powRB\", \"powRC\", \"powRD\", \"powRM\",\n",
55
+ " \"powNA\", \"powNB\", \"powNC\", \"powND\", \"powNM\",\n",
56
+ "]\n",
57
+ "\n",
58
+ "def resolve_dataset_root() -> Path:\n",
59
+ " cwd = Path.cwd()\n",
60
+ " if (cwd / 'metadata.json').exists() and (cwd / 'audio').exists():\n",
61
+ " return cwd\n",
62
+ " candidate = Path('/home/songbird/code/v33da/data/v33da')\n",
63
+ " if candidate.exists():\n",
64
+ " return candidate\n",
65
+ " raise FileNotFoundError('Could not locate the standalone v33da dataset root.')\n",
66
+ "\n",
67
+ "DATASET_ROOT = resolve_dataset_root()\n",
68
+ "DATASET_ROOT"
69
+ ]
70
+ },
71
+ {
72
+ "cell_type": "markdown",
73
+ "metadata": {},
74
+ "source": [
75
+ "## 1. Load & Inspect the Pooled Parquet Shards"
76
+ ]
77
+ },
78
+ {
79
+ "cell_type": "code",
80
+ "execution_count": null,
81
+ "metadata": {},
82
+ "outputs": [],
83
+ "source": [
84
+ "pooled_shards = sorted(DATASET_ROOT.glob('v33da-*.parquet'))\n",
85
+ "len(pooled_shards), pooled_shards[:3]"
86
+ ]
87
+ },
88
+ {
89
+ "cell_type": "code",
90
+ "execution_count": null,
91
+ "metadata": {},
92
+ "outputs": [],
93
+ "source": [
94
+ "first_table = pq.read_table(pooled_shards[0])\n",
95
+ "first_table.schema"
96
+ ]
97
+ },
98
+ {
99
+ "cell_type": "markdown",
100
+ "metadata": {},
101
+ "source": [
102
+ "## 2. Pick a Sample"
103
+ ]
104
+ },
105
+ {
106
+ "cell_type": "code",
107
+ "execution_count": null,
108
+ "metadata": {},
109
+ "outputs": [],
110
+ "source": [
111
+ "def decode_array(blob: bytes) -> np.ndarray:\n",
112
+ " return np.load(io.BytesIO(blob))\n",
113
+ "\n",
114
+ "def resolve_media_path(path_str: str) -> Path:\n",
115
+ " path = Path(path_str)\n",
116
+ " if path.is_absolute():\n",
117
+ " return path\n",
118
+ " return DATASET_ROOT / path\n",
119
+ "\n",
120
+ "def load_sample(shard_index: int = 0, row_index: int = 0):\n",
121
+ " row = pq.read_table(pooled_shards[shard_index]).slice(row_index, 1).to_pylist()[0]\n",
122
+ " row['keypoints_3d'] = decode_array(row['keypoints_3d'])\n",
123
+ " row['keypoints_2d_top'] = decode_array(row['keypoints_2d_top'])\n",
124
+ " row['keypoints_2d_back'] = decode_array(row['keypoints_2d_back'])\n",
125
+ " radio = {}\n",
126
+ " for key in RADIO_KEYS:\n",
127
+ " radio[key] = decode_array(row[f'radio_{key}'])\n",
128
+ " row['radio'] = radio\n",
129
+ " row['audio_file'] = resolve_media_path(row['audio_path'])\n",
130
+ " row['accelerometer_file'] = resolve_media_path(row['accelerometer_path'])\n",
131
+ " row['video_file'] = resolve_media_path(row['video_path'])\n",
132
+ " return row\n",
133
+ "\n",
134
+ "sample = load_sample(shard_index=0, row_index=0)\n",
135
+ "sample['id'], sample['experiment'], sample['bird_color'], sample['video_file'].name"
136
+ ]
137
+ },
138
+ {
139
+ "cell_type": "markdown",
140
+ "metadata": {},
141
+ "source": [
142
+ "## 3. Audio and Accelerometer"
143
+ ]
144
+ },
145
+ {
146
+ "cell_type": "code",
147
+ "execution_count": null,
148
+ "metadata": {},
149
+ "outputs": [],
150
+ "source": [
151
+ "audio, sr_audio = sf.read(sample['audio_file'])\n",
152
+ "accel, sr_accel = sf.read(sample['accelerometer_file'])\n",
153
+ "audio.shape, sr_audio, accel.shape, sr_accel"
154
+ ]
155
+ },
156
+ {
157
+ "cell_type": "code",
158
+ "execution_count": null,
159
+ "metadata": {},
160
+ "outputs": [],
161
+ "source": [
162
+ "fig, axes = plt.subplots(2, 1, figsize=(14, 6), sharex=False)\n",
163
+ "axes[0].plot(audio)\n",
164
+ "axes[0].set_title('Microphone audio (all channels)')\n",
165
+ "axes[1].plot(accel)\n",
166
+ "axes[1].set_title('Accelerometer audio (all channels)')\n",
167
+ "plt.tight_layout()"
168
+ ]
169
+ },
170
+ {
171
+ "cell_type": "markdown",
172
+ "metadata": {},
173
+ "source": [
174
+ "## 4. Video"
175
+ ]
176
+ },
177
+ {
178
+ "cell_type": "code",
179
+ "execution_count": null,
180
+ "metadata": {},
181
+ "outputs": [],
182
+ "source": [
183
+ "cap = cv2.VideoCapture(str(sample['video_file']))\n",
184
+ "ok, frame_bgr = cap.read()\n",
185
+ "cap.release()\n",
186
+ "frame = cv2.cvtColor(frame_bgr, cv2.COLOR_BGR2RGB) if ok else None\n",
187
+ "frame.shape if frame is not None else None"
188
+ ]
189
+ },
190
+ {
191
+ "cell_type": "code",
192
+ "execution_count": null,
193
+ "metadata": {},
194
+ "outputs": [],
195
+ "source": [
196
+ "plt.figure(figsize=(12, 8))\n",
197
+ "plt.imshow(frame)\n",
198
+ "plt.title(sample['video_file'].name)\n",
199
+ "plt.axis('off')"
200
+ ]
201
+ },
202
+ {
203
+ "cell_type": "markdown",
204
+ "metadata": {},
205
+ "source": [
206
+ "## 5. 3D Pose and 2D Keypoints"
207
+ ]
208
+ },
209
+ {
210
+ "cell_type": "code",
211
+ "execution_count": null,
212
+ "metadata": {},
213
+ "outputs": [],
214
+ "source": [
215
+ "kp3d = sample['keypoints_3d']\n",
216
+ "kp2d_top = sample['keypoints_2d_top']\n",
217
+ "kp2d_back = sample['keypoints_2d_back']\n",
218
+ "kp3d.shape, kp2d_top.shape, kp2d_back.shape"
219
+ ]
220
+ },
221
+ {
222
+ "cell_type": "code",
223
+ "execution_count": null,
224
+ "metadata": {},
225
+ "outputs": [],
226
+ "source": [
227
+ "mid = kp3d.shape[0] // 2\n",
228
+ "mid_beaks = kp3d[mid, :, 0]\n",
229
+ "\n",
230
+ "fig = plt.figure(figsize=(7, 6))\n",
231
+ "ax = fig.add_subplot(111, projection='3d')\n",
232
+ "ax.scatter(mid_beaks[:, 0], mid_beaks[:, 1], mid_beaks[:, 2], s=60)\n",
233
+ "for bird_idx, pt in enumerate(mid_beaks):\n",
234
+ " ax.text(pt[0], pt[1], pt[2], str(bird_idx))\n",
235
+ "ax.set_xlabel('X (mm)')\n",
236
+ "ax.set_ylabel('Y (mm)')\n",
237
+ "ax.set_zlabel('Z (mm)')\n",
238
+ "ax.set_title('Mid-frame beak positions')"
239
+ ]
240
+ },
241
+ {
242
+ "cell_type": "markdown",
243
+ "metadata": {},
244
+ "source": [
245
+ "## 6. Camera Calibration and Reprojection"
246
+ ]
247
+ },
248
+ {
249
+ "cell_type": "code",
250
+ "execution_count": null,
251
+ "metadata": {},
252
+ "outputs": [],
253
+ "source": [
254
+ "def load_calibration(experiment: str, view: str):\n",
255
+ " exp_dir = DATASET_ROOT / 'calibrations' / experiment\n",
256
+ " npz = np.load(exp_dir / f'calibration_{view}.npz')\n",
257
+ " with open(exp_dir / f'camera_pose_{view}.pkl', 'rb') as handle:\n",
258
+ " pose = pickle.load(handle)\n",
259
+ " return {\n",
260
+ " 'K': npz['mtx'],\n",
261
+ " 'dist': npz['dist'],\n",
262
+ " 'rvec': pose['rvec'],\n",
263
+ " 'tvec': pose['tvec'],\n",
264
+ " }\n",
265
+ "\n",
266
+ "def project_zup(points_xyz_mm: np.ndarray, calibration: dict) -> np.ndarray:\n",
267
+ " pts = np.asarray(points_xyz_mm, dtype=np.float64)\n",
268
+ " pts_cam = (R_ZUP @ pts.T).T\n",
269
+ " proj, _ = cv2.projectPoints(pts_cam, calibration['rvec'], calibration['tvec'], calibration['K'], calibration['dist'])\n",
270
+ " return proj.reshape(-1, 2)\n",
271
+ "\n",
272
+ "def reproject_view(row, view: str):\n",
273
+ " cal = load_calibration(row['experiment'], view)\n",
274
+ " kp3d_mid = row['keypoints_3d'][mid]\n",
275
+ " kp2d_mid = row[f'keypoints_2d_{view}'][mid]\n",
276
+ " projected = np.full_like(kp2d_mid, np.nan, dtype=np.float64)\n",
277
+ " errors = np.full(kp2d_mid.shape[:2], np.nan, dtype=np.float64)\n",
278
+ " for bird_idx in range(kp3d_mid.shape[0]):\n",
279
+ " valid3d = ~np.any(np.isnan(kp3d_mid[bird_idx]), axis=1)\n",
280
+ " valid2d = ~np.any(np.isnan(kp2d_mid[bird_idx]), axis=1)\n",
281
+ " if valid3d.any():\n",
282
+ " projected[bird_idx, valid3d] = project_zup(kp3d_mid[bird_idx, valid3d], cal)\n",
283
+ " valid = valid2d & valid3d\n",
284
+ " if valid.any():\n",
285
+ " errors[bird_idx, valid] = np.linalg.norm(projected[bird_idx, valid] - kp2d_mid[bird_idx, valid], axis=1)\n",
286
+ " return kp2d_mid, projected, errors\n",
287
+ "\n",
288
+ "top_obs, top_proj, top_err = reproject_view(sample, 'top')\n",
289
+ "back_obs, back_proj, back_err = reproject_view(sample, 'back')\n",
290
+ "np.nanmedian(top_err), np.nanmedian(back_err)"
291
+ ]
292
+ },
293
+ {
294
+ "cell_type": "code",
295
+ "execution_count": null,
296
+ "metadata": {},
297
+ "outputs": [],
298
+ "source": [
299
+ "def plot_reprojection(ax, observed, projected, title):\n",
300
+ " colors = ['tab:red', 'tab:orange', 'tab:blue', 'tab:green']\n",
301
+ " for bird_idx in range(observed.shape[0]):\n",
302
+ " obs = observed[bird_idx]\n",
303
+ " proj = projected[bird_idx]\n",
304
+ " valid_obs = ~np.any(np.isnan(obs), axis=1)\n",
305
+ " valid_proj = ~np.any(np.isnan(proj), axis=1)\n",
306
+ " if valid_obs.any():\n",
307
+ " ax.scatter(obs[valid_obs, 0], obs[valid_obs, 1], c=colors[bird_idx % len(colors)], marker='o', alpha=0.8)\n",
308
+ " if valid_proj.any():\n",
309
+ " ax.scatter(proj[valid_proj, 0], proj[valid_proj, 1], c=colors[bird_idx % len(colors)], marker='x', alpha=0.8)\n",
310
+ " valid = valid_obs & valid_proj\n",
311
+ " for kp_idx in np.where(valid)[0]:\n",
312
+ " ax.plot([obs[kp_idx, 0], proj[kp_idx, 0]], [obs[kp_idx, 1], proj[kp_idx, 1]], color=colors[bird_idx % len(colors)], alpha=0.35)\n",
313
+ " ax.set_title(title)\n",
314
+ " ax.invert_yaxis()\n",
315
+ " ax.set_aspect('equal')\n",
316
+ " ax.grid(alpha=0.2)\n",
317
+ "\n",
318
+ "fig, axes = plt.subplots(1, 2, figsize=(14, 6))\n",
319
+ "plot_reprojection(axes[0], top_obs, top_proj, f'top | median reproj = {np.nanmedian(top_err):.2f}px')\n",
320
+ "plot_reprojection(axes[1], back_obs, back_proj, f'back | median reproj = {np.nanmedian(back_err):.2f}px')\n",
321
+ "plt.tight_layout()"
322
+ ]
323
+ },
324
+ {
325
+ "cell_type": "markdown",
326
+ "metadata": {},
327
+ "source": [
328
+ "## 7. Radio Telemetry"
329
+ ]
330
+ },
331
+ {
332
+ "cell_type": "code",
333
+ "execution_count": null,
334
+ "metadata": {},
335
+ "outputs": [],
336
+ "source": [
337
+ "sample['radio']['powRA'].shape, sample['radio']['thetaS'].shape"
338
+ ]
339
+ },
340
+ {
341
+ "cell_type": "code",
342
+ "execution_count": null,
343
+ "metadata": {},
344
+ "outputs": [],
345
+ "source": [
346
+ "fig, axes = plt.subplots(2, 1, figsize=(14, 6), sharex=True)\n",
347
+ "axes[0].plot(sample['radio']['powRA'].T)\n",
348
+ "axes[0].set_title('radio powRA per bird')\n",
349
+ "axes[1].plot(sample['radio']['thetaS'].T)\n",
350
+ "axes[1].set_title('radio thetaS per bird')\n",
351
+ "plt.tight_layout()"
352
+ ]
353
+ },
354
+ {
355
+ "cell_type": "markdown",
356
+ "metadata": {},
357
+ "source": [
358
+ "## 8. Iterate Efficiently\n",
359
+ "\n",
360
+ "Use this pattern if you want to scan pooled shards without loading everything into RAM."
361
+ ]
362
+ },
363
+ {
364
+ "cell_type": "code",
365
+ "execution_count": null,
366
+ "metadata": {},
367
+ "outputs": [],
368
+ "source": [
369
+ "for shard in pooled_shards[:2]:\n",
370
+ " table = pq.read_table(shard, columns=['experiment', 'bird_color'])\n",
371
+ " print(shard.name, table.num_rows)"
372
+ ]
373
+ }
374
+ ],
375
+ "metadata": {
376
+ "kernelspec": {
377
+ "display_name": "Python 3",
378
+ "language": "python",
379
+ "name": "python3"
380
+ },
381
+ "language_info": {
382
+ "codemirror_mode": {
383
+ "name": "ipython",
384
+ "version": 3
385
+ },
386
+ "file_extension": ".py",
387
+ "mimetype": "text/x-python",
388
+ "name": "python",
389
+ "nbconvert_exporter": "python",
390
+ "pygments_lexer": "ipython3",
391
+ "version": "3.12"
392
+ }
393
+ },
394
+ "nbformat": 4,
395
+ "nbformat_minor": 5
396
+ }
metadata.json ADDED
@@ -0,0 +1,78 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_name": "v33da",
3
+ "per_bird_limit": null,
4
+ "num_rows": 33625,
5
+ "groups": {
6
+ "juvExpBP01/blue": 5735,
7
+ "juvExpBP01/peach": 2277,
8
+ "juvExpBP01/red": 3963,
9
+ "juvExpBP01/white": 4244,
10
+ "juvExpBP02/blue": 4923,
11
+ "juvExpBP02/peach": 4589,
12
+ "juvExpBP02/red": 2065,
13
+ "juvExpBP05/brown": 3633,
14
+ "juvExpBP05/purple": 2140,
15
+ "juvExpBP05/yellow": 56
16
+ },
17
+ "schema": [
18
+ "id",
19
+ "experiment",
20
+ "date",
21
+ "video_stem",
22
+ "bird_name",
23
+ "bird_color",
24
+ "vocalizer_idx",
25
+ "n_frames",
26
+ "keypoints_3d",
27
+ "keypoints_2d_top",
28
+ "keypoints_2d_back",
29
+ "audio",
30
+ "audio_path",
31
+ "accelerometer",
32
+ "accelerometer_path",
33
+ "video_path",
34
+ "radio_frq",
35
+ "radio_thetaS",
36
+ "radio_thetaA",
37
+ "radio_thetaB",
38
+ "radio_thetaC",
39
+ "radio_thetaD",
40
+ "radio_phiA",
41
+ "radio_phiB",
42
+ "radio_phiC",
43
+ "radio_phiD",
44
+ "radio_phiM",
45
+ "radio_powRA",
46
+ "radio_powRB",
47
+ "radio_powRC",
48
+ "radio_powRD",
49
+ "radio_powRM",
50
+ "radio_powNA",
51
+ "radio_powNB",
52
+ "radio_powNC",
53
+ "radio_powND",
54
+ "radio_powNM"
55
+ ],
56
+ "filters": {
57
+ "max_reproj_error_px": 40.0,
58
+ "max_global_displacement_px": null,
59
+ "max_intra_frame_displacement_px": 40.0,
60
+ "motion_filter_mode": "frame_to_frame_only",
61
+ "nan_policy": "drop_rows_with_any_nan_in_3d_or_2d",
62
+ "overlap_pad_sec": 0.01
63
+ },
64
+ "overlap_removed_before_build": 3784,
65
+ "frames": {
66
+ "description": "Full composite video chunks aligned to each vocalization window",
67
+ "format": "MP4 (mp4v codec)",
68
+ "frame_rate_hz": 47.6837158203125,
69
+ "pad_frames": 1
70
+ },
71
+ "external_media": {
72
+ "audio_rows_with_paths": 33625,
73
+ "accelerometer_rows_with_paths": 33625,
74
+ "video_rows_with_paths": 33625,
75
+ "media_jobs_path": "media_jobs.jsonl",
76
+ "media_results_path": "media_results.jsonl"
77
+ }
78
+ }
split_summary.json ADDED
@@ -0,0 +1,44 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "dataset_root": "/home/songbird/code/v33da/data/v33da",
3
+ "total_rows": 33625,
4
+ "session_split_counts": {
5
+ "test": 7391,
6
+ "train": 19365,
7
+ "val": 6869
8
+ },
9
+ "generalization_split_counts": {
10
+ "test": 5829,
11
+ "train": 21491,
12
+ "val": 6305
13
+ },
14
+ "session_by_experiment": {
15
+ "train": {
16
+ "juvExpBP01": 12881,
17
+ "juvExpBP02": 4455,
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+ "juvExpBP05": 2029
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+ },
20
+ "val": {
21
+ "juvExpBP01": 1008,
22
+ "juvExpBP02": 4155,
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+ "juvExpBP05": 1706
24
+ },
25
+ "test": {
26
+ "juvExpBP01": 2330,
27
+ "juvExpBP02": 2967,
28
+ "juvExpBP05": 2094
29
+ }
30
+ },
31
+ "generalization_by_experiment": {
32
+ "train": {
33
+ "juvExpBP01": 12881,
34
+ "juvExpBP02": 8610
35
+ },
36
+ "val": {
37
+ "juvExpBP01": 3338,
38
+ "juvExpBP02": 2967
39
+ },
40
+ "test": {
41
+ "juvExpBP05": 5829
42
+ }
43
+ }
44
+ }