add legacy (RT-v1 boolean typing) preprocessed rel-trial
Browse files- .gitattributes +4 -0
- legacy/rel-trial/column_index.json +1 -0
- legacy/rel-trial/meta.json +133 -0
- legacy/rel-trial/nodes.rkyv +3 -0
- legacy/rel-trial/offsets.rkyv +3 -0
- legacy/rel-trial/p2f_adj.rkyv +3 -0
- legacy/rel-trial/table_info.json +1 -0
- legacy/rel-trial/text.json +3 -0
- legacy/rel-trial/text_emb_all-MiniLM-L12-v2.bin +3 -0
.gitattributes
CHANGED
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@@ -98,3 +98,7 @@ legacy/rel-avito/nodes.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-avito/offsets.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-avito/p2f_adj.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-avito/text.json filter=lfs diff=lfs merge=lfs -text
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legacy/rel-avito/offsets.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-avito/p2f_adj.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-avito/text.json filter=lfs diff=lfs merge=lfs -text
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legacy/rel-trial/nodes.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-trial/offsets.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-trial/p2f_adj.rkyv filter=lfs diff=lfs merge=lfs -text
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legacy/rel-trial/text.json filter=lfs diff=lfs merge=lfs -text
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legacy/rel-trial/column_index.json
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studies":601798,"nct_id of sponsors_studies":1082254,"condition_id of conditions_studies":37891,"timestamp of site-success":1082284,"ci_n_sides of outcome_analyses":1655705,"zip of facilities":1561551,"has_dmc of studies":620609,"count of drop_withdrawals":3194379,"date of sponsors_studies":1082259,"nct_id of outcomes":2095264,"brief_title of studies":115361,"date of drop_withdrawals":3194380,"criteria of eligibilities":1821706,"phase of studies":601790,"sponsor_id of condition-sponsor-run":4,"baseline_type_units_analyzed of studies":628807,"non_inferiority_type of outcome_analyses":1639776,"enrollment of studies-enrollment":1769123,"description of outcomes":2487160,"timestamp of site-sponsor-run":1082244,"sponsor_id of sponsors_studies":1082255,"number_of_groups of studies":620608,"id of designs":7,"date of eligibilities-child":37894,"reason of drop_withdrawals":3169807,"num_of_adverse_events of study-adverse":1082290,"units_analyzed of outcomes":3160886,"allocation of designs":10,"p_value_modifier of outcome_analyses":1655694,"intervention_id of interventions_studies":41880,"observational_model of designs":19,"investigator_masked of designs":37885,"condition_id of conditions":37898,"facility_id of site-sponsor-run":1082245,"id of outcome_analyses":1639773,"ci_upper_limit of outcome_analyses":1655710,"gender of eligibilities":1769129,"outcomes_assessor_masked of designs":37886,"study_type of studies":42015,"time_perspective of designs":39,"is_ppsd of studies":620613,"nct_id of facilities_studies":1082276,"param_type of outcome_analyses":1650535,"subjects_at_risk of reported_event_totals":1082272,"facility_id of facilities":1082291,"nct_id of conditions_studies":37890,"intervention_id of interventions":1078882,"nct_id of drop_withdrawals":3162034,"estimate_description of outcome_analyses":1687045,"time_frame of outcomes":2849504,"id of drop_withdrawals":3162033,"official_title of studies":387759,"sponsor_id of site-sponsor-run":1082247,"id of eligibilities-adult":1082281,"date of outcome_analyses":1769119,"start_date of studies-enrollment":1769121,"older_adult of eligibilities":2095261,"subject_masked of designs":37882,"date of designs":37887}
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legacy/rel-trial/meta.json
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{
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"files": {
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"column_index": "column_index.json",
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"nodes": "nodes.rkyv",
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"offsets": "offsets.rkyv",
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| 6 |
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"p2f_adj": "p2f_adj.rkyv",
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"table_info": "table_info.json",
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"text": "text.json"
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},
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"format_version": 1,
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| 11 |
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"name": "rel-trial",
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| 12 |
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"num_db_tables": 15,
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"num_nodes": 7933813,
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"num_task_tables": 27,
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"num_text_strings": 3194381,
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"source": "stanford-star/relbench/rel-trial",
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"tasks": [
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{
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| 19 |
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"entity_table": null,
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"name": "condition-sponsor-run",
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"splits": [
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"train",
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"val",
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"test"
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],
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"target_col": "sponsor_id",
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| 27 |
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"task_type": "link_prediction",
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| 28 |
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"time_col": "timestamp"
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},
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{
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| 31 |
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"entity_table": "eligibilities",
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"name": "eligibilities-adult",
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"splits": [
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"train",
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"val",
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"test"
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],
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"target_col": "adult",
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"task_type": "binary_classification",
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"time_col": null
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},
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{
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"entity_table": "eligibilities",
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"name": "eligibilities-child",
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"splits": [
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"train",
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"val",
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"test"
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],
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| 50 |
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"target_col": "child",
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"task_type": "binary_classification",
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"time_col": null
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},
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| 54 |
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{
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| 55 |
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"entity_table": null,
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| 56 |
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"name": "site-sponsor-run",
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| 57 |
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"splits": [
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"train",
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| 59 |
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"val",
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"test"
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| 61 |
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],
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"target_col": "sponsor_id",
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| 63 |
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"task_type": "link_prediction",
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| 64 |
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"time_col": "timestamp"
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| 65 |
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},
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| 66 |
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{
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| 67 |
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"entity_table": "facilities",
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| 68 |
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"name": "site-success",
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| 69 |
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"splits": [
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"train",
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| 71 |
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"val",
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| 72 |
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"test"
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| 73 |
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],
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| 74 |
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"target_col": "success_rate",
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| 75 |
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"task_type": "regression",
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| 76 |
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"time_col": "timestamp"
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| 77 |
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},
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| 78 |
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{
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| 79 |
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"entity_table": "studies",
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| 80 |
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"name": "studies-enrollment",
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| 81 |
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"splits": [
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| 82 |
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"train",
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| 83 |
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"val",
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| 84 |
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"test"
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| 85 |
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],
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| 86 |
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"target_col": "enrollment",
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| 87 |
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"task_type": "regression",
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| 88 |
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"time_col": null
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},
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| 90 |
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{
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| 91 |
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"entity_table": "studies",
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| 92 |
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"name": "studies-has_dmc",
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| 93 |
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"splits": [
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| 94 |
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"train",
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| 95 |
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"val",
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| 96 |
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"test"
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| 97 |
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],
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| 98 |
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"target_col": "has_dmc",
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| 99 |
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"task_type": "binary_classification",
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| 100 |
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"time_col": null
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| 101 |
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},
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| 102 |
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{
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| 103 |
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"entity_table": "studies",
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| 104 |
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"name": "study-adverse",
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| 105 |
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"splits": [
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| 106 |
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"train",
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| 107 |
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"val",
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| 108 |
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"test"
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| 109 |
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],
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| 110 |
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"target_col": "num_of_adverse_events",
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| 111 |
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"task_type": "regression",
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| 112 |
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"time_col": "timestamp"
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| 113 |
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},
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| 114 |
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{
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| 115 |
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"entity_table": "studies",
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| 116 |
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"name": "study-outcome",
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| 117 |
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"splits": [
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| 118 |
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"train",
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| 119 |
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"val",
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| 120 |
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"test"
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| 121 |
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],
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| 122 |
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"target_col": "outcome",
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| 123 |
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"task_type": "binary_classification",
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| 124 |
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"time_col": "timestamp"
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| 125 |
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}
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| 126 |
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],
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| 127 |
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"text_embeddings": {
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| 128 |
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"all-MiniLM-L12-v2": {
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| 129 |
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"file": "text_emb_all-MiniLM-L12-v2.bin",
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| 130 |
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"d_text": 384
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| 131 |
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}
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| 132 |
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}
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| 133 |
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}
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legacy/rel-trial/nodes.rkyv
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version https://git-lfs.github.com/spec/v1
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oid sha256:08abbfad9538a580b17a768915ee747a3efcc6b2d65f5d9054e7a231d3dc301c
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size 2342097144
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legacy/rel-trial/offsets.rkyv
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version https://git-lfs.github.com/spec/v1
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legacy/rel-trial/p2f_adj.rkyv
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version https://git-lfs.github.com/spec/v1
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legacy/rel-trial/table_info.json
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{"eligibilities-adult:Val":{"node_idx_offset":6151025,"num_nodes":14470},"site-success:Val":{"node_idx_offset":7345526,"num_nodes":19740},"condition-sponsor-run:Train":{"node_idx_offset":5854214,"num_nodes":36934},"designs:Db":{"node_idx_offset":444516,"num_nodes":272521},"studies-enrollment:Test":{"node_idx_offset":7365266,"num_nodes":23430},"studies-has_dmc:Val":{"node_idx_offset":7858022,"num_nodes":11983},"eligibilities-adult:Test":{"node_idx_offset":5893229,"num_nodes":23430},"outcome_analyses:Db":{"node_idx_offset":3934403,"num_nodes":254420},"facilities_studies:Db":{"node_idx_offset":1883977,"num_nodes":1867226},"studies-has_dmc:Test":{"node_idx_offset":7636238,"num_nodes":18944},"sponsors_studies:Db":{"node_idx_offset":5153983,"num_nodes":425014},"studies-has_dmc:Train":{"node_idx_offset":7655182,"num_nodes":202840},"condition-sponsor-run:Val":{"node_idx_offset":5891148,"num_nodes":2081},"eligibilities-child:Train":{"node_idx_offset":6188925,"num_nodes":234366},"facilities:Db":{"node_idx_offset":1430744,"num_nodes":453233},"interventions:Db":{"node_idx_offset":3751203,"num_nodes":3462},"studies-enrollment:Train":{"node_idx_offset":7388696,"num_nodes":233072},"reported_event_totals:Db":{"node_idx_offset":4665613,"num_nodes":435129},"drop_withdrawals:Db":{"node_idx_offset":717037,"num_nodes":440547},"conditions:Db":{"node_idx_offset":0,"num_nodes":3973},"site-sponsor-run:Test":{"node_idx_offset":6437761,"num_nodes":27428},"site-success:Test":{"node_idx_offset":7171502,"num_nodes":22617},"study-adverse:Val":{"node_idx_offset":7916438,"num_nodes":3596},"site-success:Train":{"node_idx_offset":7194119,"num_nodes":151407},"site-sponsor-run:Train":{"node_idx_offset":6465189,"num_nodes":669310},"condition-sponsor-run:Test":{"node_idx_offset":5852157,"num_nodes":2057},"conditions_studies:Db":{"node_idx_offset":3973,"num_nodes":440543},"eligibilities-child:Val":{"node_idx_offset":6423291,"num_nodes":14470},"eligibilities-adult:Train":{"node_idx_offset":5916659,"num_nodes":234366},"study-outcome:Val":{"node_idx_offset":7932853,"num_nodes":960},"outcomes:Db":{"node_idx_offset":4188823,"num_nodes":476790},"studies-enrollment:Val":{"node_idx_offset":7621768,"num_nodes":14470},"eligibilities-child:Test":{"node_idx_offset":6165495,"num_nodes":23430},"studies:Db":{"node_idx_offset":5578997,"num_nodes":273160},"study-outcome:Test":{"node_idx_offset":7920034,"num_nodes":825},"sponsors:Db":{"node_idx_offset":5100742,"num_nodes":53241},"study-outcome:Train":{"node_idx_offset":7920859,"num_nodes":11994},"interventions_studies:Db":{"node_idx_offset":3754665,"num_nodes":179738},"eligibilities:Db":{"node_idx_offset":1157584,"num_nodes":273160},"site-sponsor-run:Val":{"node_idx_offset":7134499,"num_nodes":37003},"study-adverse:Train":{"node_idx_offset":7873103,"num_nodes":43335},"study-adverse:Test":{"node_idx_offset":7870005,"num_nodes":3098}}
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legacy/rel-trial/text.json
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version https://git-lfs.github.com/spec/v1
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oid sha256:66266e462c50ba8c16e8d904c1828b861cfb000464c72686dcc27e3a6fdf51d9
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| 3 |
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size 1159577677
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legacy/rel-trial/text_emb_all-MiniLM-L12-v2.bin
ADDED
|
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|
|
|
|
|
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| 1 |
+
version https://git-lfs.github.com/spec/v1
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| 2 |
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oid sha256:3112a28444983cbe8cd05adfeff0feed8322a4e3bad7bf3628d19d6f2d8215bb
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| 3 |
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size 2453284608
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