| --- |
| license: cc-by-nc-4.0 |
| task_categories: |
| - image-segmentation |
| language: |
| - en |
| tags: |
| - medical |
| - image |
| pretty_name: 'segrap23-lite' |
| size_categories: |
| - n<1K |
| --- |
| |
|
|
| ## About |
| This is a subset of the [SegRap23 dataset](https://segrap2023.grand-challenge.org/dataset/). |
| - 120 images (for both contrast-CT and CT) and segmentation masks (for both tasks 1 and 2 in [SegRap23 challenge](https://segrap2023.grand-challenge.org)) |
| - No change to any image or segmentation mask |
| - Files are renamed according to case IDs |
|
|
| This dataset is released under the `CC BY-NC 4.0` license. |
|
|
|
|
|
|
| ## Official Release |
| For more information, please refer to the [SegRap23 challenge](https://segrap2023.grand-challenge.org). |
| - Data License (official): N/A (Please contact [me](https://yongchengyao.github.io) if there are any licensing issues.) |
| - Challenge (official): https://segrap2023.grand-challenge.org |
| - Data (official): https://segrap2023.grand-challenge.org/dataset/ |
| - Paper: https://doi.org/10.1016/j.media.2024.103447 |
| |
|
|
|
|
| ## Segmentation Labels |
| ```python |
| labels_map_tasks1 = { |
| "1": "brain", |
| "2": "brainstem", |
| "3": "optic chiasm", |
| "4": "left temporal lobe", |
| "5": "right temporal lobe", |
| "6": "left overlap region of temporal lobe & hippocampus", |
| "7": "right overlap region of temporal lobe & hippocampus", |
| "8": "left hippocampus", |
| "9": "right hippocampus", |
| "10": "left eye", |
| "11": "right eye", |
| "12": "left lens", |
| "13": "right lens", |
| "14": "left optic nerve", |
| "15": "right optic nerve", |
| "16": "left middle ear", |
| "17": "right middle ear", |
| "18": "left internal auditory canal", |
| "19": "right internal auditory canal", |
| "20": "left overlap region of middle ear & tympanic cavity", |
| "21": "right overlap region of middle ear & tympanic cavity", |
| "22": "left tympanic cavity", |
| "23": "right tympanic cavity", |
| "24": "left overlap region of middle ear & vestibular semicircular canal", |
| "25": "right overlap region of middle ear & vestibular semicircular canal", |
| "26": "left vestibular semicircular canal", |
| "27": "right vestibular semicircular canal", |
| "28": "left cochlea", |
| "29": "right cochlea", |
| "30": "left overlap region of middle ear & eustachian tube bone", |
| "31": "right overlap region of middle ear & eustachian tube bone", |
| "32": "left eustachian tube bone", |
| "33": "right eustachian tube bone", |
| "34": "pituitary gland", |
| "35": "oral cavity", |
| "36": "left mandible", |
| "37": "right mandible", |
| "38": "left submandibular gland", |
| "39": "right submandibular gland", |
| "40": "left parotid gland", |
| "41": "right parotid gland", |
| "42": "left mastoid", |
| "43": "right mastoid", |
| "44": "left temporomandibular joint", |
| "45": "right temporomandibular joint", |
| "46": "spinal cord", |
| "47": "esophagus", |
| "48": "larynx", |
| "49": "larynx glottic", |
| "50": "larynx supraglottic", |
| "51": "overlap region of larynx & pharynx constrictors", |
| "52": "pharynx constrictor", |
| "53": "thyroid", |
| "54": "trachea", |
| } |
| |
| labels_map_tasks2 = { |
| "1": "gross target volume of nasopharynx tumor", |
| "2": "gross target volume of lymph node tumor", |
| } |
| ``` |
|
|
|
|
| ## Download from Huggingface |
| ```bash |
| #!/bin/bash |
| pip install huggingface-hub[cli] |
| huggingface-cli login --token $HF_TOKEN |
| ``` |
| ```python |
| # python |
| from huggingface_hub import snapshot_download |
| snapshot_download(repo_id="YongchengYAO/SegRap23-Lite", repo_type='dataset', local_dir="/your/local/folder") |
| ``` |
|
|
|
|
| ## Download from Raw Data |
| ```python |
| python download_SegRap23.py -d <datasets_folder> -n SegRap23 |
| ``` |
