stumbledparams commited on
Commit
3e636eb
·
verified ·
1 Parent(s): 2f417e6

Upload folder using huggingface_hub

Browse files
This view is limited to 50 files because it contains too many changes.   See raw diff
Files changed (50) hide show
  1. .gitattributes +3 -60
  2. .gitignore +24 -0
  3. README.md +243 -0
  4. example/BBBC/annotation.jsonl +10 -0
  5. example/BBBC/images/BBBC_example_1.png +3 -0
  6. example/BBBC/images/BBBC_example_10.png +3 -0
  7. example/BBBC/images/BBBC_example_2.png +3 -0
  8. example/BBBC/images/BBBC_example_3.png +3 -0
  9. example/BBBC/images/BBBC_example_4.png +3 -0
  10. example/BBBC/images/BBBC_example_5.png +3 -0
  11. example/BBBC/images/BBBC_example_6.png +3 -0
  12. example/BBBC/images/BBBC_example_7.png +3 -0
  13. example/BBBC/images/BBBC_example_8.png +3 -0
  14. example/BBBC/images/BBBC_example_9.png +3 -0
  15. example/BBBC/images_overlay/BBBC_example_1.png +3 -0
  16. example/BBBC/images_overlay/BBBC_example_10.png +3 -0
  17. example/BBBC/images_overlay/BBBC_example_2.png +3 -0
  18. example/BBBC/images_overlay/BBBC_example_3.png +3 -0
  19. example/BBBC/images_overlay/BBBC_example_4.png +3 -0
  20. example/BBBC/images_overlay/BBBC_example_5.png +3 -0
  21. example/BBBC/images_overlay/BBBC_example_6.png +3 -0
  22. example/BBBC/images_overlay/BBBC_example_7.png +3 -0
  23. example/BBBC/images_overlay/BBBC_example_8.png +3 -0
  24. example/BBBC/images_overlay/BBBC_example_9.png +3 -0
  25. example/BCCD/annotation.jsonl +10 -0
  26. example/BCCD/images/BCCD_example_1.jpg +3 -0
  27. example/BCCD/images/BCCD_example_10.jpg +3 -0
  28. example/BCCD/images/BCCD_example_2.jpg +3 -0
  29. example/BCCD/images/BCCD_example_3.jpg +3 -0
  30. example/BCCD/images/BCCD_example_4.jpg +3 -0
  31. example/BCCD/images/BCCD_example_5.jpg +3 -0
  32. example/BCCD/images/BCCD_example_6.jpg +3 -0
  33. example/BCCD/images/BCCD_example_7.jpg +3 -0
  34. example/BCCD/images/BCCD_example_8.jpg +3 -0
  35. example/BCCD/images/BCCD_example_9.jpg +3 -0
  36. example/BCCD/images_overlay/BCCD_example_1.jpg +3 -0
  37. example/BCCD/images_overlay/BCCD_example_10.jpg +3 -0
  38. example/BCCD/images_overlay/BCCD_example_2.jpg +3 -0
  39. example/BCCD/images_overlay/BCCD_example_3.jpg +3 -0
  40. example/BCCD/images_overlay/BCCD_example_4.jpg +3 -0
  41. example/BCCD/images_overlay/BCCD_example_5.jpg +3 -0
  42. example/BCCD/images_overlay/BCCD_example_6.jpg +3 -0
  43. example/BCCD/images_overlay/BCCD_example_7.jpg +3 -0
  44. example/BCCD/images_overlay/BCCD_example_8.jpg +3 -0
  45. example/BCCD/images_overlay/BCCD_example_9.jpg +3 -0
  46. example/LIVECell/annotation.jsonl +10 -0
  47. example/LIVECell/images/LIVECell_example_1.png +3 -0
  48. example/LIVECell/images/LIVECell_example_10.png +3 -0
  49. example/LIVECell/images/LIVECell_example_2.png +3 -0
  50. example/LIVECell/images/LIVECell_example_3.png +3 -0
.gitattributes CHANGED
@@ -1,60 +1,3 @@
1
- *.7z filter=lfs diff=lfs merge=lfs -text
2
- *.arrow filter=lfs diff=lfs merge=lfs -text
3
- *.avro filter=lfs diff=lfs merge=lfs -text
4
- *.bin filter=lfs diff=lfs merge=lfs -text
5
- *.bz2 filter=lfs diff=lfs merge=lfs -text
6
- *.ckpt filter=lfs diff=lfs merge=lfs -text
7
- *.ftz filter=lfs diff=lfs merge=lfs -text
8
- *.gz filter=lfs diff=lfs merge=lfs -text
9
- *.h5 filter=lfs diff=lfs merge=lfs -text
10
- *.joblib filter=lfs diff=lfs merge=lfs -text
11
- *.lfs.* filter=lfs diff=lfs merge=lfs -text
12
- *.lz4 filter=lfs diff=lfs merge=lfs -text
13
- *.mds filter=lfs diff=lfs merge=lfs -text
14
- *.mlmodel filter=lfs diff=lfs merge=lfs -text
15
- *.model filter=lfs diff=lfs merge=lfs -text
16
- *.msgpack filter=lfs diff=lfs merge=lfs -text
17
- *.npy filter=lfs diff=lfs merge=lfs -text
18
- *.npz filter=lfs diff=lfs merge=lfs -text
19
- *.onnx filter=lfs diff=lfs merge=lfs -text
20
- *.ot filter=lfs diff=lfs merge=lfs -text
21
- *.parquet filter=lfs diff=lfs merge=lfs -text
22
- *.pb filter=lfs diff=lfs merge=lfs -text
23
- *.pickle filter=lfs diff=lfs merge=lfs -text
24
- *.pkl filter=lfs diff=lfs merge=lfs -text
25
- *.pt filter=lfs diff=lfs merge=lfs -text
26
- *.pth filter=lfs diff=lfs merge=lfs -text
27
- *.rar filter=lfs diff=lfs merge=lfs -text
28
- *.safetensors filter=lfs diff=lfs merge=lfs -text
29
- saved_model/**/* filter=lfs diff=lfs merge=lfs -text
30
- *.tar.* filter=lfs diff=lfs merge=lfs -text
31
- *.tar filter=lfs diff=lfs merge=lfs -text
32
- *.tflite filter=lfs diff=lfs merge=lfs -text
33
- *.tgz filter=lfs diff=lfs merge=lfs -text
34
- *.wasm filter=lfs diff=lfs merge=lfs -text
35
- *.xz filter=lfs diff=lfs merge=lfs -text
36
- *.zip filter=lfs diff=lfs merge=lfs -text
37
- *.zst filter=lfs diff=lfs merge=lfs -text
38
- *tfevents* filter=lfs diff=lfs merge=lfs -text
39
- # Audio files - uncompressed
40
- *.pcm filter=lfs diff=lfs merge=lfs -text
41
- *.sam filter=lfs diff=lfs merge=lfs -text
42
- *.raw filter=lfs diff=lfs merge=lfs -text
43
- # Audio files - compressed
44
- *.aac filter=lfs diff=lfs merge=lfs -text
45
- *.flac filter=lfs diff=lfs merge=lfs -text
46
- *.mp3 filter=lfs diff=lfs merge=lfs -text
47
- *.ogg filter=lfs diff=lfs merge=lfs -text
48
- *.wav filter=lfs diff=lfs merge=lfs -text
49
- # Image files - uncompressed
50
- *.bmp filter=lfs diff=lfs merge=lfs -text
51
- *.gif filter=lfs diff=lfs merge=lfs -text
52
- *.png filter=lfs diff=lfs merge=lfs -text
53
- *.tiff filter=lfs diff=lfs merge=lfs -text
54
- # Image files - compressed
55
- *.jpg filter=lfs diff=lfs merge=lfs -text
56
- *.jpeg filter=lfs diff=lfs merge=lfs -text
57
- *.webp filter=lfs diff=lfs merge=lfs -text
58
- # Video files - compressed
59
- *.mp4 filter=lfs diff=lfs merge=lfs -text
60
- *.webm filter=lfs diff=lfs merge=lfs -text
 
1
+ *.png filter=lfs diff=lfs merge=lfs -text
2
+ *.jpg filter=lfs diff=lfs merge=lfs -text
3
+ *.jpeg filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
.gitignore ADDED
@@ -0,0 +1,24 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ # Scripts (not part of the dataset release)
2
+ scripts/
3
+
4
+ # Python artifacts
5
+ __pycache__/
6
+ *.py[cod]
7
+ *.pyo
8
+
9
+ # OS metadata
10
+ .DS_Store
11
+ Thumbs.db
12
+ desktop.ini
13
+
14
+ # Editor directories
15
+ .vscode/
16
+ .idea/
17
+
18
+ # Python environments
19
+ venv/
20
+ .env
21
+ env/
22
+
23
+ # Jupyter
24
+ .ipynb_checkpoints/
README.md ADDED
@@ -0,0 +1,243 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ task_categories:
3
+ - object-detection
4
+ tags:
5
+ - microscopy
6
+ - biology
7
+ - few-shot
8
+ - cell-detection
9
+ - biomedical
10
+ - malaria
11
+ - blood-cells
12
+ - live-cell-imaging
13
+ - fibroblast
14
+ size_categories:
15
+ - n<1K
16
+ ---
17
+
18
+ # Micro-OD
19
+
20
+ **Micro-OD** is a few-shot microscopy object detection benchmark. It aggregates four publicly available biological imaging datasets across distinct microscopy domains and cell types, and packages them into a standardised format designed for evaluating vision models — in particular, large vision-language models (VLMs) — under few-shot, in-context prompting conditions.
21
+
22
+ ## Motivation
23
+
24
+ Microscopy object detection is a challenging setting for general-purpose vision models: images are domain-specific, class vocabularies are narrow but fine-grained, and labelled data is scarce. Micro-OD is designed to probe how well a model can detect cells and parasites in a new domain when given only a handful of annotated example images at inference time — without any fine-tuning.
25
+
26
+ ## Dataset Splits
27
+
28
+ The dataset contains two splits that together constitute the few-shot evaluation protocol:
29
+
30
+ | Split | Role | Images per sub-dataset | Total images |
31
+ |---|---|---|---|
32
+ | `example` | Few-shot support set | 10 | 40 |
33
+ | `test` | Evaluation query set | 53 | 212 |
34
+
35
+ **Evaluation protocol:** For each sub-dataset, a model may be provided with up to **10 example images** (from the `example` split) as in-context demonstrations. It is then evaluated on each of the **53 test images** in the `test` split. No fine-tuning on the example images is assumed — they serve solely as few-shot context.
36
+
37
+ ## Sub-datasets
38
+
39
+ Micro-OD draws from four independent biological imaging datasets, each occupying its own sub-directory within each split.
40
+
41
+ ### BBBC — Malaria Parasite Detection
42
+
43
+ - **Domain:** Bright-field blood smear images; malaria parasite detection
44
+ - **Source:** [Broad Bioimage Benchmark Collection](https://bbbc.broadinstitute.org/)
45
+ - **Original size:** 1,328 images
46
+ - **Image format:** PNG
47
+ - **Classes (6):**
48
+ | Class | Description |
49
+ |---|---|
50
+ | Red Blood Cells | Uninfected erythrocytes; overwhelmingly dominant class |
51
+ | Trophozoite Cells | Early intracellular malaria parasite stage |
52
+ | Ring Cells | Ring-form malaria parasite stage |
53
+ | Gametocyte Cells | Sexual-stage malaria parasites |
54
+ | Schizont Cells | Late-stage malaria parasites (multinucleate) |
55
+ | White Blood Cells | Leucocytes; rare in smear images |
56
+
57
+ ### BCCD — Blood Cell Count Dataset
58
+
59
+ - **Domain:** Peripheral blood smear images; complete blood cell counting
60
+ - **Source:** [BCCD Dataset](https://github.com/Shenggan/BCCD_Dataset)
61
+ - **Original size:** 364 images
62
+ - **Image format:** JPG
63
+ - **Classes (3):**
64
+ | Class | Description |
65
+ |---|---|
66
+ | Red Blood Cells | Erythrocytes; most abundant class |
67
+ | White Blood Cells | Leucocytes; large, clearly visible nuclei |
68
+ | Platelets | Thrombocytes; small and sparse |
69
+
70
+ ### LIVECell — Live Cell Phase-Contrast Imaging (RatC6)
71
+
72
+ - **Domain:** Phase-contrast microscopy of RatC6 (rat glioblastoma) cells in culture
73
+ - **Images:** [LIVECell Dataset](https://sartorius-research.github.io/LIVECell/) — Edlund et al., 2021 (RatC6 subset)
74
+ - **Annotations:** Morphology-based bounding-box labels (Polygonal / Round / Spindle) annotated in-lab
75
+ - **Original size:** 420 images (RatC6 subset)
76
+ - **Image format:** PNG
77
+ - **Classes (3):**
78
+ | Class | Description |
79
+ |---|---|
80
+ | Spindle Cells | Elongated, bipolar morphology; predominant class |
81
+ | Polygonal Cells | Flat, multi-angular morphology |
82
+ | Round Cells | Spherical or near-spherical morphology |
83
+
84
+ ### NIH-3T3 — Mouse Fibroblast Cell Line
85
+
86
+ - **Domain:** Phase-contrast microscopy of NIH-3T3 mouse fibroblasts
87
+ - **Images & Annotations:** In-lab collection and annotation
88
+ - **Original size:** 63 images
89
+ - **Image format:** PNG
90
+ - **Classes (3):**
91
+ | Class | Description |
92
+ |---|---|
93
+ | Polygonal Cells | Flat, multi-angular morphology; dominant class |
94
+ | Spindle Cells | Elongated, bipolar fibroblast morphology |
95
+ | Round Cells | Spherical or detached cells |
96
+
97
+ ## Folder Structure
98
+
99
+ ```
100
+ Micro-OD/
101
+ ├── example/ # Few-shot support set
102
+ │ ├── BBBC/
103
+ │ │ ├── annotation.jsonl # Bounding-box annotations
104
+ │ │ ├── images/ # 10 PNG images
105
+ │ │ └── images_overlay/ # 10 images with bounding boxes drawn
106
+ │ ├── BCCD/
107
+ │ │ ├── annotation.jsonl
108
+ │ │ ├── images/ # 10 JPG images
109
+ │ │ └── images_overlay/
110
+ │ ├── LIVECell/
111
+ │ │ ├── annotation.jsonl
112
+ │ │ ├── images/ # 10 PNG images
113
+ │ │ └── images_overlay/
114
+ │ ├── NIH-3T3/
115
+ │ │ ├── annotation.jsonl
116
+ │ │ ├── images/ # 10 PNG images
117
+ │ │ └── images_overlay/
118
+ │ └── stat.txt # Split-level statistics
119
+
120
+ └── test/ # Evaluation query set
121
+ ├── BBBC/
122
+ │ ├── annotation.jsonl
123
+ │ ├── images/ # 53 PNG images
124
+ │ └── images_overlay/
125
+ ├── BCCD/
126
+ │ ├── annotation.jsonl
127
+ │ ├── images/ # 53 JPG images
128
+ │ └── images_overlay/
129
+ ├── LIVECell/
130
+ │ ├── annotation.jsonl
131
+ │ ├── images/ # 53 PNG images
132
+ │ └── images_overlay/
133
+ ├── NIH-3T3/
134
+ │ ├── annotation.jsonl
135
+ │ ├── images/ # 53 PNG images
136
+ │ └── images_overlay/
137
+ └── stat.txt # Split-level statistics
138
+ ```
139
+
140
+ Each `images_overlay/` folder contains copies of the images with ground-truth bounding boxes rendered on top, useful for visual verification.
141
+
142
+ ## Annotation Format
143
+
144
+ Annotations are stored as [JSON Lines](https://jsonlines.org/) (`.jsonl`) files — one JSON object per line, one line per image.
145
+
146
+ ```json
147
+ {
148
+ "image_path": "images/<filename>",
149
+ "bbox": {
150
+ "<class_name>": [
151
+ [[x_min, y_min], [x_max, y_max]],
152
+ [[x_min, y_min], [x_max, y_max]]
153
+ ],
154
+ "<class_name>": [
155
+ [[x_min, y_min], [x_max, y_max]]
156
+ ]
157
+ }
158
+ }
159
+ ```
160
+
161
+ **Coordinate convention:**
162
+ - All coordinates are in **pixel space**.
163
+ - Each bounding box is represented as two points: `[x_min, y_min]` (top-left corner) and `[x_max, y_max]` (bottom-right corner).
164
+ - A class key is present only if at least one instance of that class appears in the image.
165
+
166
+ **Concrete example** (from `example/BCCD/annotation.jsonl`):
167
+
168
+ ```json
169
+ {
170
+ "image_path": "images/BCCD_example_1.jpg",
171
+ "bbox": {
172
+ "Red Blood Cells": [
173
+ [[201, 223], [314, 322]],
174
+ [[1, 252], [89, 357]],
175
+ [[203, 336], [292, 441]]
176
+ ],
177
+ "White Blood Cells": [
178
+ [[211, 4], [338, 132]]
179
+ ],
180
+ "Platelets": [
181
+ [[330, 442], [373, 480]]
182
+ ]
183
+ }
184
+ }
185
+ ```
186
+
187
+ ## Dataset Statistics
188
+
189
+ Detailed per-class statistics are available in `example/stat.txt` and `test/stat.txt`. Summaries are provided below.
190
+
191
+ ### Test Split — 212 images
192
+
193
+ | Sub-dataset | Images | Classes | Total boxes | Boxes/image (mean) | Boxes/image (range) |
194
+ |---|---|---|---|---|---|
195
+ | BBBC | 53 | 6 | 4,000 | 75.5 | 19–135 |
196
+ | BCCD | 53 | 3 | 952 | 18.0 | 9–30 |
197
+ | LIVECell | 53 | 3 | 223 | 4.2 | 1–15 |
198
+ | NIH-3T3 | 53 | 3 | 376 | 7.1 | 1–14 |
199
+ | **Total** | **212** | **10** | **5,551** | — | — |
200
+
201
+ ### Example Split — 40 images
202
+
203
+ The **Support-Spread Score** (SS) is a composite metric reflecting both class coverage (fraction of classes represented in the sample) and class balance (how evenly instances are distributed across represented classes). Higher is better; a score of 1.0 indicates perfect coverage and balance.
204
+
205
+ | Sub-dataset | Images | Total boxes | Boxes/image (mean) | Support-Spread Score |
206
+ |---|---|---|---|---|
207
+ | BBBC | 10 | 734 | 73.4 | 0.136 |
208
+ | BCCD | 10 | 78 | 7.8 | 0.680 |
209
+ | LIVECell | 10 | 40 | 4.0 | 0.763 |
210
+ | NIH-3T3 | 10 | 62 | 6.2 | 0.612 |
211
+ | **Total** | **40** | **914** | — | — |
212
+
213
+ The low SS for BBBC (0.136) reflects the extreme dominance of Red Blood Cells in the malaria dataset, which makes it difficult to achieve a balanced 10-image sample across all 6 classes.
214
+
215
+ ### Class Inventory
216
+
217
+ | Class | Sub-dataset(s) | Test boxes |
218
+ |---|---|---|
219
+ | Gametocyte Cells | BBBC | 24 |
220
+ | Platelets | BCCD | 159 |
221
+ | Polygonal Cells | LIVECell, NIH-3T3 | 417 |
222
+ | Red Blood Cells | BBBC, BCCD | 4,427 |
223
+ | Ring Cells | BBBC | 34 |
224
+ | Round Cells | LIVECell, NIH-3T3 | 24 |
225
+ | Schizont Cells | BBBC | 10 |
226
+ | Spindle Cells | LIVECell, NIH-3T3 | 158 |
227
+ | Trophozoite Cells | BBBC | 193 |
228
+ | White Blood Cells | BBBC, BCCD | 105 |
229
+
230
+ Note that Polygonal Cells, Round Cells, and Spindle Cells appear in both LIVECell and NIH-3T3 but describe morphologically similar — not biologically identical — phenotypes in different cell lines.
231
+
232
+ ## Attribution
233
+
234
+ Micro-OD combines images and annotations from multiple sources. Please credit the original sources as appropriate:
235
+
236
+ - **BBBC (malaria):** Ljosa, V., Sokolnicki, K. L., & Carpenter, A. E. (2012). Annotated high-throughput microscopy image sets for validation. *Nature Methods*, 9(7), 637. [https://bbbc.broadinstitute.org/](https://bbbc.broadinstitute.org/)
237
+
238
+ - **BCCD:** Shenggan. *BCCD Dataset*. GitHub. [https://github.com/Shenggan/BCCD_Dataset](https://github.com/Shenggan/BCCD_Dataset)
239
+
240
+ - **LIVECell (images):** Edlund, C., et al. (2021). LIVECell — A large-scale dataset for label-free live cell segmentation. *Nature Methods*, 18(9), 1038–1045. [https://doi.org/10.1038/s41592-021-01249-6](https://doi.org/10.1038/s41592-021-01249-6). The morphology-based bounding-box annotations used in Micro-OD were produced in-lab and are not part of the original LIVECell release.
241
+
242
+ - **NIH-3T3:** Images and bounding-box annotations are an in-lab collection and are not sourced from a public dataset.
243
+
example/BBBC/annotation.jsonl ADDED
@@ -0,0 +1,10 @@
 
 
 
 
 
 
 
 
 
 
 
1
+ {"image_path": "images/BBBC_example_1.png", "bbox": {"Red Blood Cells": [[[452, 915], [540, 1014]], [[434, 159], [538, 275]], [[482, 334], [581, 444]], [[418, 414], [519, 528]], [[950, 770], [1054, 877]], [[1452, 156], [1557, 269]], [[1302, 818], [1409, 930]], [[363, 1012], [477, 1122]], [[726, 424], [825, 527]], [[1100, 35], [1211, 152]], [[954, 613], [1069, 730]], [[888, 438], [1009, 558]], [[1267, 1005], [1375, 1111]], [[684, 551], [776, 651]], [[1232, 737], [1329, 853]], [[139, 280], [263, 400]], [[1422, 665], [1522, 757]], [[318, 44], [461, 154]], [[718, 246], [821, 355]], [[1376, 522], [1508, 627]], [[519, 1068], [645, 1182]], [[1482, 784], [1585, 888]], [[1373, 1068], [1495, 1185]], [[869, 812], [969, 927]], [[937, 1041], [1022, 1130]], [[970, 170], [1088, 260]], [[688, 1014], [808, 1115]], [[1093, 415], [1206, 529]], [[198, 843], [305, 962]], [[1185, 577], [1288, 687]], [[863, 1018], [974, 1131]], [[1254, 291], [1362, 386]], [[290, 866], [385, 970]], [[1414, 846], [1484, 951]], [[1223, 486], [1336, 600]], [[1199, 442], [1293, 555]], [[628, 770], [722, 872]], [[1081, 226], [1174, 331]], [[680, 888], [761, 1015]], [[1053, 444], [1166, 550]], [[1267, 364], [1389, 465]], [[1416, 973], [1530, 1115]], [[729, 887], [832, 996]], [[90, 667], [181, 793]], [[1006, 381], [1099, 493]], [[632, 893], [707, 1011]]], "Schizont Cells": [[[725, 790], [840, 908]]], "Gametocyte Cells": [[[172, 688], [287, 842]]], "Trophozoite Cells": [[[1480, 849], [1591, 993]]]}}
2
+ {"image_path": "images/BBBC_example_2.png", "bbox": {"Red Blood Cells": [[[160, 951], [275, 1054]], [[1011, 979], [1144, 1103]], [[1161, 596], [1298, 721]], [[508, 552], [631, 675]], [[170, 829], [268, 921]], [[66, 941], [158, 1035]], [[194, 61], [305, 159]], [[96, 40], [198, 153]], [[160, 1051], [278, 1168]], [[189, 656], [314, 778]], [[1293, 207], [1432, 340]], [[289, 559], [398, 664]], [[372, 804], [494, 910]], [[264, 750], [362, 853]], [[63, 357], [179, 473]], [[609, 360], [726, 479]], [[297, 175], [422, 283]], [[202, 434], [327, 550]], [[179, 310], [296, 434]], [[954, 804], [1069, 913]], [[1369, 143], [1494, 246]], [[1398, 1033], [1517, 1156]], [[481, 825], [594, 938]], [[520, 280], [633, 420]], [[1340, 950], [1448, 1068]], [[1174, 984], [1276, 1113]], [[1075, 685], [1188, 809]], [[454, 706], [577, 814]], [[320, 467], [435, 572]], [[418, 160], [529, 270]], [[141, 213], [229, 310]], [[383, 314], [468, 434]], [[1096, 110], [1224, 232]], [[1130, 262], [1250, 370]], [[1289, 837], [1380, 939]], [[294, 281], [389, 372]], [[1112, 319], [1217, 424]], [[1453, 810], [1559, 900]], [[831, 413], [942, 537]], [[431, 667], [533, 777]], [[1239, 768], [1357, 874]], [[594, 857], [712, 971]], [[84, 232], [219, 353]], [[1430, 256], [1557, 377]], [[304, 0], [416, 114]], [[32, 1099], [141, 1198]], [[1170, 381], [1275, 501]], [[762, 413], [869, 516]], [[408, 404], [545, 535]], [[674, 909], [783, 1003]], [[692, 479], [804, 594]], [[223, 254], [306, 347]], [[408, 68], [500, 156]], [[693, 988], [815, 1099]], [[794, 1014], [892, 1114]], [[1078, 453], [1191, 546]], [[1168, 721], [1271, 821]], [[1384, 413], [1485, 507]], [[1296, 396], [1393, 485]]], "Ring Cells": [[[28, 170], [155, 298]]], "White Blood Cells": [[[1470, 418], [1558, 526]]], "Trophozoite Cells": [[[566, 143], [676, 302]], [[988, 468], [1144, 685]], [[575, 948], [727, 1117]], [[1397, 881], [1546, 1018]]], "Gametocyte Cells": [[[682, 588], [777, 674]]]}}
3
+ {"image_path": "images/BBBC_example_3.png", "bbox": {"Red Blood Cells": [[[1046, 588], [1140, 682]], [[592, 1018], [699, 1097]], [[873, 982], [965, 1097]], [[227, 437], [349, 552]], [[1200, 180], [1309, 289]], [[1080, 161], [1191, 276]], [[1368, 590], [1481, 699]], [[361, 791], [466, 905]], [[947, 508], [1040, 614]], [[1124, 852], [1226, 951]], [[879, 156], [977, 250]], [[654, 139], [755, 235]], [[58, 38], [154, 139]], [[945, 361], [1054, 466]], [[742, 417], [857, 503]], [[150, 757], [238, 854]], [[665, 1099], [749, 1194]], [[807, 690], [913, 783]], [[1384, 115], [1499, 225]], [[456, 526], [563, 654]], [[975, 255], [1080, 349]], [[621, 364], [718, 471]], [[1007, 986], [1108, 1082]], [[1044, 826], [1146, 926]], [[432, 963], [530, 1076]], [[1313, 198], [1418, 302]], [[1212, 663], [1332, 764]], [[1184, 918], [1297, 1008]], [[695, 314], [785, 411]], [[649, 243], [757, 346]], [[83, 208], [186, 323]], [[240, 571], [336, 670]], [[1097, 445], [1213, 556]], [[806, 438], [911, 543]], [[1364, 291], [1478, 397]], [[226, 820], [344, 923]], [[323, 543], [426, 659]], [[49, 750], [143, 842]], [[15, 836], [122, 950]], [[1010, 130], [1123, 242]], [[882, 775], [984, 887]], [[733, 175], [856, 283]], [[1129, 531], [1236, 631]], [[526, 15], [642, 120]], [[1038, 691], [1151, 792]], [[699, 582], [813, 691]], [[1346, 6], [1457, 118]], [[523, 379], [635, 494]], [[30, 526], [136, 646]], [[77, 92], [182, 199]], [[932, 1089], [1048, 1195]], [[293, 41], [391, 152]], [[997, 708], [1085, 823]], [[1, 284], [81, 370]], [[98, 605], [220, 714]], [[1444, 680], [1562, 796]], [[1398, 760], [1514, 868]], [[907, 806], [1031, 916]], [[291, 939], [384, 1027]], [[1278, 757], [1385, 860]], [[1326, 786], [1410, 885]], [[449, 438], [546, 531]], [[291, 680], [409, 800]], [[676, 498], [785, 601]], [[1082, 336], [1176, 441]], [[860, 500], [965, 603]], [[1290, 661], [1412, 761]], [[81, 832], [197, 950]], [[240, 135], [346, 250]], [[30, 655], [146, 759]], [[1208, 1099], [1313, 1193]], [[184, 890], [302, 995]], [[1033, 1091], [1131, 1196]], [[1048, 297], [1151, 415]]], "White Blood Cells": [[[814, 599], [913, 689]]], "Ring Cells": [[[392, 69], [501, 188]], [[505, 657], [693, 777]]], "Trophozoite Cells": [[[334, 430], [455, 559]], [[1035, 58], [1185, 167]], [[116, 484], [234, 612]], [[770, 777], [909, 995]], [[1189, 992], [1348, 1131]]], "Gametocyte Cells": [[[380, 301], [518, 457]]]}}
4
+ {"image_path": "images/BBBC_example_4.png", "bbox": {"Red Blood Cells": [[[210, 31], [307, 127]], [[504, 176], [610, 284]], [[260, 998], [351, 1090]], [[902, 426], [1002, 520]], [[642, 981], [741, 1067]], [[902, 831], [1011, 940]], [[882, 331], [992, 433]], [[1344, 586], [1448, 688]], [[1057, 123], [1175, 223]], [[1077, 25], [1198, 123]], [[1404, 976], [1500, 1090]], [[1366, 873], [1461, 970]], [[450, 478], [554, 575]], [[716, 78], [818, 166]], [[788, 266], [895, 353]], [[1446, 1023], [1545, 1148]], [[437, 746], [524, 835]], [[862, 659], [976, 765]], [[795, 914], [893, 1017]], [[98, 383], [194, 488]], [[1372, 692], [1473, 806]], [[881, 740], [976, 833]], [[639, 366], [721, 448]], [[497, 298], [598, 395]], [[705, 907], [789, 996]], [[22, 420], [116, 518]], [[1455, 585], [1538, 676]], [[884, 192], [987, 287]], [[1366, 83], [1467, 196]], [[1204, 890], [1280, 978]], [[856, 7], [979, 97]], [[1299, 143], [1379, 227]], [[141, 894], [228, 977]], [[681, 804], [781, 906]], [[1453, 486], [1576, 599]], [[1022, 555], [1112, 654]], [[6, 871], [102, 975]], [[1047, 218], [1177, 329]], [[861, 101], [960, 194]], [[1460, 78], [1554, 210]], [[735, 647], [839, 749]], [[711, 554], [806, 638]], [[512, 648], [605, 733]], [[189, 492], [292, 604]], [[351, 981], [450, 1089]], [[82, 1041], [186, 1140]], [[690, 705], [766, 789]], [[218, 718], [325, 834]], [[1325, 22], [1411, 117]], [[1297, 997], [1388, 1079]], [[385, 563], [497, 677]], [[1310, 865], [1426, 964]], [[993, 523], [1082, 619]], [[299, 798], [386, 910]], [[1467, 648], [1571, 758]], [[839, 1009], [938, 1108]], [[1353, 437], [1456, 521]], [[419, 600], [512, 692]], [[222, 826], [329, 939]], [[553, 425], [664, 549]], [[127, 725], [211, 807]], [[1385, 373], [1484, 463]], [[52, 67], [137, 165]], [[1256, 891], [1343, 1013]], [[366, 417], [447, 559]], [[1228, 728], [1319, 830]], [[99, 171], [200, 273]], [[247, 658], [351, 800]], [[103, 807], [187, 893]], [[24, 1114], [101, 1200]], [[116, 97], [204, 185]], [[336, 90], [415, 194]], [[436, 153], [510, 247]], [[1243, 71], [1321, 144]], [[1178, 271], [1256, 366]], [[183, 174], [269, 254]], [[6, 174], [90, 267]], [[434, 381], [507, 490]], [[499, 400], [587, 493]], [[207, 424], [284, 503]], [[77, 495], [163, 587]], [[151, 460], [256, 555]], [[1493, 140], [1591, 250]]], "Schizont Cells": [[[39, 727], [141, 859]]], "Gametocyte Cells": [[[278, 411], [401, 533]]], "Trophozoite Cells": [[[1136, 693], [1279, 852]], [[239, 161], [424, 279]]]}}
5
+ {"image_path": "images/BBBC_example_5.png", "bbox": {"Red Blood Cells": [[[434, 119], [548, 239]], [[718, 818], [820, 952]], [[320, 63], [435, 194]], [[1335, 872], [1445, 999]], [[155, 121], [274, 239]], [[434, 773], [535, 874]], [[975, 938], [1093, 1048]], [[565, 167], [685, 274]], [[1026, 270], [1134, 385]], [[1443, 154], [1548, 291]], [[611, 688], [723, 798]], [[1436, 691], [1567, 825]], [[280, 713], [395, 819]], [[1353, 738], [1453, 847]], [[700, 598], [815, 686]], [[378, 591], [502, 704]], [[352, 909], [472, 1016]], [[285, 820], [392, 933]], [[822, 766], [933, 878]], [[728, 335], [841, 454]], [[874, 438], [978, 544]], [[646, 441], [755, 568]], [[1341, 215], [1458, 321]], [[9, 515], [122, 650]], [[1325, 312], [1449, 417]], [[4, 180], [129, 280]], [[1326, 548], [1410, 669]], [[376, 1015], [488, 1122]], [[448, 1089], [545, 1190]], [[502, 366], [600, 480]], [[1111, 852], [1217, 977]], [[1212, 968], [1348, 1047]], [[893, 95], [1013, 193]], [[257, 923], [352, 1013]], [[1051, 1019], [1180, 1148]], [[949, 214], [1051, 359]], [[1149, 646], [1259, 732]], [[1188, 1054], [1333, 1154]], [[904, 353], [1024, 433]], [[1223, 837], [1341, 982]], [[603, 563], [712, 689]], [[6, 348], [108, 458]], [[848, 650], [959, 764]], [[1167, 440], [1296, 526]], [[825, 607], [941, 709]], [[560, 39], [675, 156]], [[258, 244], [363, 411]], [[408, 373], [503, 512]], [[877, 154], [990, 245]], [[465, 265], [550, 350]], [[569, 476], [669, 594]], [[1201, 492], [1346, 587]], [[1246, 684], [1355, 775]], [[1108, 385], [1176, 567]], [[1215, 576], [1326, 664]]], "Gametocyte Cells": [[[1158, 725], [1288, 857]]], "Schizont Cells": [[[988, 438], [1120, 580]]], "Trophozoite Cells": [[[324, 473], [451, 621]], [[734, 154], [884, 288]], [[453, 936], [573, 1106]]]}}
6
+ {"image_path": "images/BBBC_example_6.png", "bbox": {"Red Blood Cells": [[[661, 660], [756, 750]], [[849, 454], [949, 556]], [[598, 1037], [693, 1133]], [[782, 846], [878, 959]], [[769, 692], [867, 799]], [[432, 756], [527, 854]], [[107, 1070], [228, 1182]], [[188, 700], [306, 808]], [[1164, 425], [1287, 538]], [[662, 427], [760, 517]], [[11, 919], [126, 1032]], [[388, 106], [494, 210]], [[1427, 310], [1533, 415]], [[1100, 604], [1212, 719]], [[820, 592], [917, 707]], [[306, 864], [409, 988]], [[1041, 230], [1149, 341]], [[958, 556], [1064, 668]], [[471, 521], [587, 613]], [[1334, 371], [1438, 478]], [[477, 335], [586, 447]], [[1483, 502], [1593, 615]], [[228, 182], [330, 288]], [[1226, 837], [1336, 948]], [[336, 220], [440, 322]], [[577, 234], [664, 345]], [[557, 934], [671, 1034]], [[1034, 1010], [1130, 1102]], [[201, 344], [308, 453]], [[635, 165], [745, 280]], [[1484, 234], [1581, 320]], [[1225, 536], [1344, 658]], [[142, 378], [262, 480]], [[240, 828], [321, 909]], [[135, 612], [246, 723]], [[485, 6], [596, 103]], [[1472, 1043], [1594, 1140]], [[740, 603], [815, 688]], [[374, 432], [506, 531]], [[1202, 213], [1344, 345]], [[88, 614], [180, 735]], [[1, 787], [108, 867]], [[1, 669], [101, 772]], [[1, 37], [97, 131]]], "Trophozoite Cells": [[[862, 12], [985, 142]], [[357, 1045], [493, 1157]]], "White Blood Cells": [[[84, 215], [234, 353]]], "Schizont Cells": [[[129, 527], [315, 640]]]}}
7
+ {"image_path": "images/BBBC_example_7.png", "bbox": {"Red Blood Cells": [[[1093, 169], [1180, 274]], [[635, 1001], [734, 1104]], [[1010, 803], [1107, 911]], [[267, 876], [377, 986]], [[1155, 875], [1253, 997]], [[811, 902], [915, 1004]], [[391, 965], [486, 1054]], [[864, 106], [974, 218]], [[250, 337], [367, 439]], [[997, 124], [1083, 241]], [[722, 963], [829, 1063]], [[52, 669], [158, 770]], [[884, 489], [982, 593]], [[510, 811], [604, 933]], [[1443, 996], [1563, 1111]], [[36, 876], [152, 981]], [[22, 1067], [105, 1168]], [[1204, 667], [1311, 794]], [[406, 11], [520, 120]], [[661, 845], [747, 941]], [[992, 485], [1113, 600]], [[973, 979], [1074, 1097]], [[215, 125], [315, 220]], [[151, 621], [241, 723]], [[245, 550], [340, 647]], [[131, 276], [215, 395]], [[368, 1070], [465, 1174]], [[32, 287], [136, 402]], [[1126, 302], [1209, 401]], [[1364, 221], [1472, 322]], [[495, 150], [589, 242]], [[408, 131], [499, 224]], [[1360, 429], [1470, 525]], [[945, 355], [1038, 443]], [[995, 403], [1097, 490]], [[445, 868], [547, 981]], [[579, 787], [673, 899]], [[409, 437], [523, 542]], [[451, 674], [536, 765]], [[1219, 310], [1330, 412]], [[1065, 361], [1161, 475]], [[853, 785], [966, 912]], [[1, 451], [84, 540]], [[835, 237], [940, 334]], [[1218, 567], [1310, 663]], [[1088, 743], [1187, 856]], [[531, 390], [627, 514]], [[493, 428], [598, 535]], [[464, 327], [550, 419]], [[709, 347], [805, 470]], [[727, 113], [853, 228]], [[869, 357], [949, 468]], [[1476, 39], [1575, 139]], [[1481, 520], [1571, 619]], [[1029, 243], [1136, 361]], [[539, 1071], [643, 1199]], [[1022, 40], [1109, 129]], [[784, 568], [887, 690]], [[772, 407], [879, 482]], [[249, 436], [366, 537]], [[1467, 212], [1562, 308]], [[1401, 506], [1496, 632]], [[623, 554], [704, 644]], [[388, 255], [490, 359]], [[164, 770], [252, 868]], [[1344, 557], [1425, 639]], [[642, 377], [740, 493]], [[758, 198], [851, 290]], [[72, 777], [171, 892]], [[421, 541], [535, 650]], [[564, 107], [650, 202]], [[1172, 800], [1274, 877]], [[224, 763], [328, 897]], [[813, 254], [917, 359]], [[312, 239], [402, 358]], [[615, 375], [695, 482]], [[130, 6], [206, 101]], [[1223, 360], [1316, 460]], [[1346, 346], [1467, 441]], [[1419, 1102], [1525, 1199]], [[348, 205], [448, 322]], [[533, 256], [617, 366]], [[684, 525], [783, 654]], [[312, 471], [419, 563]], [[1516, 267], [1600, 366]], [[793, 471], [888, 538]]], "Ring Cells": [[[617, 223], [741, 346]]], "Schizont Cells": [[[347, 757], [449, 946]]], "Trophozoite Cells": [[[882, 710], [1021, 890]], [[759, 523], [916, 643]]]}}
8
+ {"image_path": "images/BBBC_example_8.png", "bbox": {"Red Blood Cells": [[[1456, 365], [1580, 477]], [[1042, 445], [1165, 570]], [[1016, 1043], [1124, 1143]], [[1220, 1062], [1333, 1180]], [[755, 908], [886, 1032]], [[1238, 241], [1359, 367]], [[100, 353], [210, 462]], [[1374, 619], [1476, 713]], [[1438, 933], [1561, 1049]], [[130, 1099], [241, 1189]], [[30, 866], [141, 964]], [[265, 995], [386, 1095]], [[1460, 502], [1588, 619]], [[283, 878], [413, 996]], [[943, 121], [1050, 240]], [[564, 825], [672, 924]], [[1211, 920], [1296, 1018]], [[130, 898], [257, 1014]], [[395, 857], [518, 960]], [[359, 806], [461, 902]], [[1353, 1037], [1460, 1140]], [[559, 392], [687, 519]], [[26, 131], [143, 243]], [[862, 85], [965, 183]], [[174, 755], [270, 850]], [[425, 645], [553, 764]], [[231, 590], [342, 698]], [[489, 1057], [602, 1156]], [[907, 229], [1029, 352]], [[1016, 220], [1146, 346]], [[1240, 347], [1356, 463]], [[588, 980], [696, 1090]], [[463, 766], [569, 860]], [[480, 234], [594, 359]], [[408, 168], [534, 286]], [[909, 646], [1030, 770]], [[1155, 422], [1270, 519]], [[235, 1081], [351, 1180]], [[748, 74], [877, 192]], [[189, 825], [297, 922]], [[835, 541], [950, 659]], [[163, 1009], [267, 1101]], [[999, 864], [1114, 986]], [[1114, 312], [1232, 419]], [[1139, 1015], [1256, 1117]], [[45, 663], [172, 790]], [[532, 615], [647, 709]], [[1032, 768], [1132, 868]], [[1334, 937], [1461, 1063]], [[98, 792], [194, 881]], [[670, 949], [793, 1061]], [[1065, 881], [1183, 1016]], [[1080, 345], [1189, 456]], [[12, 0], [99, 105]], [[161, 1006], [252, 1085]], [[821, 426], [929, 547]], [[1366, 241], [1534, 341]], [[1066, 978], [1185, 1098]], [[862, 664], [965, 778]], [[311, 3], [435, 131]], [[30, 410], [117, 487]], [[65, 532], [179, 649]], [[148, 618], [271, 727]], [[1145, 531], [1241, 638]], [[1184, 708], [1288, 819]], [[536, 611], [655, 688]], [[1200, 736], [1305, 839]], [[753, 387], [851, 516]], [[939, 834], [1046, 920]], [[66, 128], [184, 233]]], "White Blood Cells": [[[1386, 839], [1512, 954]]], "Gametocyte Cells": [[[434, 952], [573, 1085]]], "Trophozoite Cells": [[[1432, 714], [1579, 842]], [[41, 949], [175, 1108]], [[1099, 575], [1253, 702]], [[922, 738], [1063, 866]], [[47, 453], [188, 603]]], "Ring Cells": [[[559, 677], [687, 820]]]}}
9
+ {"image_path": "images/BBBC_example_9.png", "bbox": {"Red Blood Cells": [[[1392, 990], [1507, 1109]], [[1274, 1056], [1407, 1173]], [[1402, 787], [1526, 915]], [[477, 1069], [592, 1187]], [[153, 255], [280, 376]], [[316, 563], [450, 689]], [[207, 66], [314, 168]], [[197, 391], [310, 523]], [[443, 516], [569, 638]], [[1466, 640], [1580, 764]], [[201, 869], [328, 1002]], [[1155, 884], [1291, 1002]], [[1004, 951], [1114, 1056]], [[1101, 979], [1204, 1078]], [[1063, 197], [1189, 337]], [[118, 1067], [239, 1194]], [[744, 1001], [854, 1108]], [[197, 521], [298, 638]], [[477, 5], [580, 98]], [[348, 166], [459, 279]], [[540, 974], [669, 1098]], [[922, 971], [1022, 1074]], [[110, 470], [199, 574]], [[892, 26], [1012, 150]], [[665, 905], [777, 1033]], [[302, 491], [416, 600]], [[377, 810], [506, 931]], [[1443, 180], [1573, 313]], [[1036, 1071], [1158, 1194]], [[1281, 807], [1401, 921]], [[860, 836], [984, 961]], [[1218, 793], [1332, 903]], [[1207, 656], [1320, 771]], [[681, 565], [805, 688]], [[454, 96], [556, 188]], [[56, 53], [162, 154]], [[101, 94], [210, 193]], [[969, 246], [1076, 362]], [[930, 289], [1037, 408]], [[101, 676], [216, 774]], [[133, 781], [233, 888]], [[45, 732], [146, 838]], [[92, 883], [192, 999]], [[66, 995], [171, 1093]], [[32, 1097], [131, 1191]], [[1331, 633], [1440, 744]], [[1307, 915], [1412, 1014]], [[1266, 956], [1373, 1052]], [[1341, 715], [1435, 808]], [[744, 736], [913, 830]], [[881, 727], [1005, 847]], [[747, 1042], [869, 1136]]], "White Blood Cells": [[[364, 281], [495, 401]]], "Trophozoite Cells": [[[1038, 548], [1196, 682]]], "Ring Cells": [[[1042, 678], [1174, 824]]]}}
10
+ {"image_path": "images/BBBC_example_10.png", "bbox": {"Red Blood Cells": [[[951, 993], [1060, 1099]], [[728, 304], [832, 399]], [[1260, 445], [1364, 552]], [[1019, 235], [1135, 357]], [[598, 838], [696, 932]], [[1039, 74], [1156, 193]], [[127, 643], [231, 752]], [[725, 53], [827, 153]], [[1214, 100], [1332, 208]], [[892, 86], [1010, 205]], [[1139, 474], [1244, 587]], [[164, 290], [271, 389]], [[22, 654], [136, 766]], [[142, 820], [238, 919]], [[1375, 1087], [1496, 1189]], [[406, 834], [516, 930]], [[322, 397], [431, 496]], [[1158, 195], [1280, 303]], [[864, 210], [973, 328]], [[1145, 992], [1256, 1097]], [[1335, 58], [1448, 168]], [[958, 436], [1073, 557]], [[1136, 1087], [1240, 1173]], [[284, 562], [395, 663]], [[1447, 850], [1550, 958]], [[466, 374], [560, 484]], [[191, 114], [310, 230]], [[592, 381], [696, 473]], [[794, 349], [904, 456]], [[1361, 424], [1466, 522]], [[1497, 958], [1595, 1070]], [[562, 7], [680, 108]], [[1310, 522], [1438, 641]], [[514, 996], [642, 1094]], [[591, 107], [689, 203]], [[637, 971], [751, 1081]], [[1103, 723], [1200, 812]], [[1311, 776], [1403, 867]], [[1039, 511], [1144, 616]], [[796, 711], [897, 804]], [[258, 66], [364, 170]], [[331, 882], [417, 972]], [[779, 131], [892, 238]], [[715, 956], [828, 1072]], [[1445, 165], [1527, 252]], [[719, 539], [801, 627]], [[1142, 324], [1242, 421]], [[1188, 821], [1306, 922]], [[1361, 851], [1452, 950]], [[319, 239], [414, 344]], [[505, 150], [599, 259]], [[1093, 639], [1178, 718]], [[1395, 507], [1496, 620]], [[433, 306], [538, 401]], [[1257, 632], [1367, 741]], [[1348, 976], [1454, 1065]], [[1285, 198], [1376, 292]], [[417, 478], [528, 557]], [[1050, 979], [1152, 1078]], [[1211, 936], [1296, 1013]], [[141, 1004], [229, 1094]], [[50, 932], [155, 1038]], [[801, 538], [895, 622]], [[1211, 379], [1291, 482]], [[637, 1084], [733, 1194]], [[20, 582], [119, 655]], [[199, 599], [305, 697]], [[1142, 575], [1245, 684]], [[813, 1097], [906, 1198]], [[592, 709], [707, 807]], [[286, 1003], [381, 1086]], [[57, 505], [150, 585]], [[908, 246], [1017, 365]], [[554, 925], [648, 1023]], [[726, 1058], [817, 1147]], [[408, 223], [496, 320]], [[840, 456], [938, 529]], [[834, 826], [921, 914]], [[673, 159], [755, 244]], [[144, 44], [215, 138]], [[137, 1099], [245, 1197]], [[904, 598], [1004, 700]], [[53, 408], [168, 505]], [[764, 805], [847, 893]], [[235, 234], [321, 325]], [[143, 916], [230, 1007]], [[140, 745], [243, 824]], [[690, 835], [793, 927]], [[875, 5], [961, 97]], [[1245, 20], [1338, 100]], [[722, 203], [831, 304]], [[773, 621], [857, 703]], [[408, 146], [514, 216]], [[750, 452], [847, 539]], [[399, 562], [485, 648]], [[100, 354], [197, 449]], [[1385, 623], [1471, 709]], [[1353, 709], [1425, 791]], [[25, 773], [118, 868]], [[165, 390], [247, 467]], [[120, 501], [220, 569]], [[1351, 263], [1446, 342]], [[1505, 184], [1598, 270]], [[25, 825], [136, 927]], [[50, 868], [156, 970]], [[34, 995], [118, 1097]], [[902, 705], [999, 773]], [[476, 907], [558, 999]], [[227, 922], [304, 995]], [[238, 836], [333, 916]], [[653, 780], [741, 852]], [[313, 1108], [383, 1197]], [[968, 5], [1054, 93]], [[854, 641], [920, 727]], [[240, 487], [313, 558]]], "Trophozoite Cells": [[[1312, 328], [1433, 431]]], "White Blood Cells": [[[61, 27], [154, 113]]], "Schizont Cells": [[[992, 595], [1133, 689]]]}}
example/BBBC/images/BBBC_example_1.png ADDED

Git LFS Details

  • SHA256: c5b8f63464301a4abc0623406cfda34dd52ef8a81d42791e2739820c33b1e8c2
  • Pointer size: 132 Bytes
  • Size of remote file: 1.69 MB
example/BBBC/images/BBBC_example_10.png ADDED

Git LFS Details

  • SHA256: c49633f3d2a7c6fd11b3c05dbc37d8ef8b7c44841c0e30cb9e07171bd29ad1f7
  • Pointer size: 132 Bytes
  • Size of remote file: 2.32 MB
example/BBBC/images/BBBC_example_2.png ADDED

Git LFS Details

  • SHA256: 2306a881e3b6050e3a72cf9094165d97cb7e1b741b4295d549763e3e32506d9a
  • Pointer size: 132 Bytes
  • Size of remote file: 2.36 MB
example/BBBC/images/BBBC_example_3.png ADDED

Git LFS Details

  • SHA256: 09d262fba72143a9a4bd1d92222115aa744a8f631adb96e338663afbd0a71f57
  • Pointer size: 132 Bytes
  • Size of remote file: 2.05 MB
example/BBBC/images/BBBC_example_4.png ADDED

Git LFS Details

  • SHA256: e064e94878cda35792de78089fe9f252b45bf1bade5a29859681dd4ce584cb50
  • Pointer size: 132 Bytes
  • Size of remote file: 1.8 MB
example/BBBC/images/BBBC_example_5.png ADDED

Git LFS Details

  • SHA256: d1bf273e045a21bf064c04866d5cc1ea990a18ebd3406978ce1636d6c3103c0c
  • Pointer size: 132 Bytes
  • Size of remote file: 2.22 MB
example/BBBC/images/BBBC_example_6.png ADDED

Git LFS Details

  • SHA256: 89bdc3a83dd736c5225cee8d1040d23b134be65c367f89480373139161a6a74d
  • Pointer size: 132 Bytes
  • Size of remote file: 1.74 MB
example/BBBC/images/BBBC_example_7.png ADDED

Git LFS Details

  • SHA256: 961ed179abed02e8f087dd0472f2addcdcea72b3ba37b70f6bdd27552c310f01
  • Pointer size: 132 Bytes
  • Size of remote file: 1.93 MB
example/BBBC/images/BBBC_example_8.png ADDED

Git LFS Details

  • SHA256: baaf77e4620b824cfe6dd9ae776534e48e6bc3939ac4d166509d7b4a883c8991
  • Pointer size: 132 Bytes
  • Size of remote file: 1.91 MB
example/BBBC/images/BBBC_example_9.png ADDED

Git LFS Details

  • SHA256: 8ca647af5d8d054c30d7b145ddfc1d054adc701fc05368b636c39f01d5f7266f
  • Pointer size: 132 Bytes
  • Size of remote file: 2.34 MB
example/BBBC/images_overlay/BBBC_example_1.png ADDED

Git LFS Details

  • SHA256: dcb0c873214000e858171d5b321965ad95b8798df60cf32837d263862b494bbb
  • Pointer size: 132 Bytes
  • Size of remote file: 2.15 MB
example/BBBC/images_overlay/BBBC_example_10.png ADDED

Git LFS Details

  • SHA256: 06ea0dcf1cbb3a3f3fc967de4a47d1ac376317bd877ce3df0329f06e1b2ed32e
  • Pointer size: 132 Bytes
  • Size of remote file: 2.41 MB
example/BBBC/images_overlay/BBBC_example_2.png ADDED

Git LFS Details

  • SHA256: b074a0ad4f807bf55eaaec84926ee5f1687b01f6cf992f780f9dfa058018abb5
  • Pointer size: 132 Bytes
  • Size of remote file: 2.55 MB
example/BBBC/images_overlay/BBBC_example_3.png ADDED

Git LFS Details

  • SHA256: 07d4cbe7cf140499a99dd3c7de60cf09a1158fa5bffe9939865e1a87a6099780
  • Pointer size: 132 Bytes
  • Size of remote file: 2.33 MB
example/BBBC/images_overlay/BBBC_example_4.png ADDED

Git LFS Details

  • SHA256: 4bdb5a6a2dbbef5fabd1f218f70b1a249199ab67b687f793d857577f80742ec2
  • Pointer size: 132 Bytes
  • Size of remote file: 2.13 MB
example/BBBC/images_overlay/BBBC_example_5.png ADDED

Git LFS Details

  • SHA256: 2ba7b8e0551655726b36f91937795d296ea2193b26a7bfaf201d67aa1e828f18
  • Pointer size: 132 Bytes
  • Size of remote file: 2.49 MB
example/BBBC/images_overlay/BBBC_example_6.png ADDED

Git LFS Details

  • SHA256: 8115698adc59d8ec4b9d28cee77b20cd7c55d718fe4050a26277f092243e3e5d
  • Pointer size: 132 Bytes
  • Size of remote file: 2.19 MB
example/BBBC/images_overlay/BBBC_example_7.png ADDED

Git LFS Details

  • SHA256: d3c3730813b592b4ca972ba05532e586a69cb4cd92849d4f7a8dd64068a03604
  • Pointer size: 132 Bytes
  • Size of remote file: 2.2 MB
example/BBBC/images_overlay/BBBC_example_8.png ADDED

Git LFS Details

  • SHA256: 417a01417287f3532fd17e747294d03031edcea040de7cbf08939a190832353f
  • Pointer size: 132 Bytes
  • Size of remote file: 2.22 MB
example/BBBC/images_overlay/BBBC_example_9.png ADDED

Git LFS Details

  • SHA256: 670bebfcd8f9a2e43642372c7e994d711163c708692fd24ea5c963fa4981dec3
  • Pointer size: 132 Bytes
  • Size of remote file: 2.55 MB
example/BCCD/annotation.jsonl ADDED
@@ -0,0 +1,10 @@
 
 
 
 
 
 
 
 
 
 
 
1
+ {"image_path": "images/BCCD_example_1.jpg", "bbox": {"Red Blood Cells": [[[201, 223], [314, 322]], [[1, 252], [89, 357]], [[203, 336], [292, 441]], [[507, 293], [624, 422]], [[464, 76], [577, 175]], [[6, 33], [141, 169]], [[106, 229], [188, 325]], [[196, 146], [289, 221]]], "White Blood Cells": [[[211, 4], [338, 132]]], "Platelets": [[[330, 442], [373, 480]]]}}
2
+ {"image_path": "images/BCCD_example_2.jpg", "bbox": {"Red Blood Cells": [[[9, 249], [109, 357]], [[452, 1], [556, 95]], [[109, 272], [210, 357]], [[251, 1], [352, 86]], [[218, 389], [323, 480]]], "White Blood Cells": [[[172, 126], [349, 312]]], "Platelets": [[[546, 82], [584, 118]]]}}
3
+ {"image_path": "images/BCCD_example_3.jpg", "bbox": {"Red Blood Cells": [[[177, 154], [302, 272]], [[221, 271], [346, 389]], [[255, 40], [373, 152]], [[379, 22], [496, 133]], [[78, 382], [188, 480]], [[20, 8], [154, 113]], [[137, 34], [280, 158]]], "White Blood Cells": [[[46, 212], [193, 370]]], "Platelets": [[[445, 455], [489, 479]]]}}
4
+ {"image_path": "images/BCCD_example_4.jpg", "bbox": {"Red Blood Cells": [[[344, 274], [448, 392]], [[416, 371], [572, 461]], [[417, 176], [504, 277]], [[472, 175], [581, 275]], [[340, 38], [444, 156]]], "White Blood Cells": [[[40, 41], [222, 206]]], "Platelets": [[[266, 191], [317, 228]]]}}
5
+ {"image_path": "images/BCCD_example_5.jpg", "bbox": {"Red Blood Cells": [[[404, 253], [511, 356]], [[278, 300], [385, 403]], [[501, 170], [608, 273]], [[86, 1], [193, 124]]], "White Blood Cells": [[[255, 187], [406, 321]]], "Platelets": [[[507, 265], [566, 334]]]}}
6
+ {"image_path": "images/BCCD_example_6.jpg", "bbox": {"Red Blood Cells": [[[208, 278], [312, 400]], [[247, 232], [351, 337]], [[325, 163], [429, 268]], [[257, 105], [361, 210]], [[100, 393], [247, 480]], [[1, 60], [104, 165]]], "White Blood Cells": [[[354, 4], [513, 153]]], "Platelets": [[[230, 146], [267, 177]]]}}
7
+ {"image_path": "images/BCCD_example_7.jpg", "bbox": {"Red Blood Cells": [[[237, 344], [325, 436]], [[148, 177], [236, 269]], [[475, 343], [597, 465]], [[267, 221], [354, 325]], [[42, 63], [136, 152]]], "White Blood Cells": [[[339, 219], [500, 364]]], "Platelets": [[[250, 80], [283, 117]]]}}
8
+ {"image_path": "images/BCCD_example_8.jpg", "bbox": {"Red Blood Cells": [[[474, 80], [575, 176]], [[405, 78], [506, 174]], [[453, 227], [550, 348]], [[64, 89], [161, 210]], [[1, 330], [87, 434]], [[277, 301], [389, 394]]], "White Blood Cells": [[[279, 128], [437, 301]]], "Platelets": [[[604, 125], [640, 177]]]}}
9
+ {"image_path": "images/BCCD_example_9.jpg", "bbox": {"Red Blood Cells": [[[401, 57], [495, 168]], [[442, 65], [547, 190]], [[192, 137], [306, 248]], [[22, 46], [136, 157]], [[134, 48], [248, 159]], [[459, 267], [565, 366]]], "White Blood Cells": [[[159, 229], [403, 468]]], "Platelets": [[[74, 313], [109, 352]]]}}
10
+ {"image_path": "images/BCCD_example_10.jpg", "bbox": {"Red Blood Cells": [[[18, 350], [124, 456]], [[511, 209], [617, 315]], [[518, 317], [624, 423]], [[385, 43], [491, 149]], [[303, 64], [409, 170]], [[90, 147], [196, 253]]], "White Blood Cells": [[[188, 165], [387, 366]]], "Platelets": [[[513, 298], [549, 330]]]}}
example/BCCD/images/BCCD_example_1.jpg ADDED

Git LFS Details

  • SHA256: 69b59c23469435d015295f14d9826c9da79f871721518f12dbadf113dcafbde5
  • Pointer size: 130 Bytes
  • Size of remote file: 19.3 kB
example/BCCD/images/BCCD_example_10.jpg ADDED

Git LFS Details

  • SHA256: 83dd26dac28f1bc1bbe51ac661999a211c20de37a2b59f3e900bdd5df4f5bfc5
  • Pointer size: 130 Bytes
  • Size of remote file: 20.7 kB
example/BCCD/images/BCCD_example_2.jpg ADDED

Git LFS Details

  • SHA256: 5bb893c3a00a6329b1f0e0dc647a048ecf81176093946633fc6e2cc0d4142e1f
  • Pointer size: 130 Bytes
  • Size of remote file: 20.2 kB
example/BCCD/images/BCCD_example_3.jpg ADDED

Git LFS Details

  • SHA256: 6d963c660848538d990f674aa2ae8ff671052a6c6251e781a7c50d2e42bf1da9
  • Pointer size: 130 Bytes
  • Size of remote file: 18.7 kB
example/BCCD/images/BCCD_example_4.jpg ADDED

Git LFS Details

  • SHA256: a992799ca501fddab170872591ba4c941c5fff6ff2e1cb1253bd0f7669af2cd2
  • Pointer size: 130 Bytes
  • Size of remote file: 19.2 kB
example/BCCD/images/BCCD_example_5.jpg ADDED

Git LFS Details

  • SHA256: 886f8bd08655e1d3e6aed575c811f8f6da67ebc489b62ae044f3af20c2392efb
  • Pointer size: 130 Bytes
  • Size of remote file: 19.1 kB
example/BCCD/images/BCCD_example_6.jpg ADDED

Git LFS Details

  • SHA256: 02305fe804634070adfd837a404049b31be537b53305b0b0cfddca7e2037bd59
  • Pointer size: 130 Bytes
  • Size of remote file: 20.5 kB
example/BCCD/images/BCCD_example_7.jpg ADDED

Git LFS Details

  • SHA256: 40034e4609b6c2b61521c84372cfb65d4a935a2c8b69faf70f7d899d7f4dd6bb
  • Pointer size: 130 Bytes
  • Size of remote file: 20.4 kB
example/BCCD/images/BCCD_example_8.jpg ADDED

Git LFS Details

  • SHA256: 9e0ecb0cdce435b057d3a90d1e8a28ececaa5acab6f90d389c331eaea3a26713
  • Pointer size: 130 Bytes
  • Size of remote file: 20.6 kB
example/BCCD/images/BCCD_example_9.jpg ADDED

Git LFS Details

  • SHA256: 318afa3f39825c5256b71bb9394f2d4bdbbd10c2b536620c0ce884385d1a4618
  • Pointer size: 130 Bytes
  • Size of remote file: 21.9 kB
example/BCCD/images_overlay/BCCD_example_1.jpg ADDED

Git LFS Details

  • SHA256: 4fa797d6964118ad76bf3eb698680cbf97643894b68f86ec53b4f6760a213473
  • Pointer size: 130 Bytes
  • Size of remote file: 67.4 kB
example/BCCD/images_overlay/BCCD_example_10.jpg ADDED

Git LFS Details

  • SHA256: e5ff848d05fe6c8b5aba43ed681ed00f5aa8e4d10e90814458056c963ea1472c
  • Pointer size: 130 Bytes
  • Size of remote file: 64.2 kB
example/BCCD/images_overlay/BCCD_example_2.jpg ADDED

Git LFS Details

  • SHA256: 067b9fe1b581c80d5106b67662c39af8f8daa8cb973bbbe3b047372068652c91
  • Pointer size: 130 Bytes
  • Size of remote file: 59 kB
example/BCCD/images_overlay/BCCD_example_3.jpg ADDED

Git LFS Details

  • SHA256: f96833a5d4bf4e19d2b8cfd9a94343a96e054456d393f77f52331aaf642bfc80
  • Pointer size: 130 Bytes
  • Size of remote file: 62.9 kB
example/BCCD/images_overlay/BCCD_example_4.jpg ADDED

Git LFS Details

  • SHA256: 7953b60cffbe92b2b536ad576b14b99c0dcac2f6558191eb6f9ead18ec246abd
  • Pointer size: 130 Bytes
  • Size of remote file: 58.7 kB
example/BCCD/images_overlay/BCCD_example_5.jpg ADDED

Git LFS Details

  • SHA256: dba6494dd9aebea094ca9d2db6eab2f00d126ec72fb6036f0458d9758c2abb2c
  • Pointer size: 130 Bytes
  • Size of remote file: 55.1 kB
example/BCCD/images_overlay/BCCD_example_6.jpg ADDED

Git LFS Details

  • SHA256: 1cd456ebe246c073c928a87bb8d76c9f1659577e4685524e11e3e2d8e3aa10e4
  • Pointer size: 130 Bytes
  • Size of remote file: 63.9 kB
example/BCCD/images_overlay/BCCD_example_7.jpg ADDED

Git LFS Details

  • SHA256: 135affe33c4eba5b2e8346a1d9b0822036568ec03692e98f9f289623e1a72c55
  • Pointer size: 130 Bytes
  • Size of remote file: 58 kB
example/BCCD/images_overlay/BCCD_example_8.jpg ADDED

Git LFS Details

  • SHA256: 94d99675bb440a377bb1460c09a7f40652e1ae6671782a714096b92dbfdcb0e1
  • Pointer size: 130 Bytes
  • Size of remote file: 63.6 kB
example/BCCD/images_overlay/BCCD_example_9.jpg ADDED

Git LFS Details

  • SHA256: 8ceeb663626a0228fc059f04c71f7b3917da918c90359f23b90e4414a88e8964
  • Pointer size: 130 Bytes
  • Size of remote file: 67.3 kB
example/LIVECell/annotation.jsonl ADDED
@@ -0,0 +1,10 @@
 
 
 
 
 
 
 
 
 
 
 
1
+ {"image_path": "images/LIVECell_example_1.png", "bbox": {"Spindle Cells": [[[248, 375], [340, 441]]], "Polygonal Cells": [[[439, 361], [503, 452]]]}}
2
+ {"image_path": "images/LIVECell_example_2.png", "bbox": {"Round Cells": [[[525, 15], [575, 81]]], "Spindle Cells": [[[8, 184], [69, 267]], [[344, 437], [419, 506]]], "Polygonal Cells": [[[165, 170], [222, 250]], [[353, 231], [476, 324]], [[430, 25], [520, 110]]]}}
3
+ {"image_path": "images/LIVECell_example_3.png", "bbox": {"Spindle Cells": [[[419, 433], [471, 504]]], "Polygonal Cells": [[[353, 225], [430, 307]]]}}
4
+ {"image_path": "images/LIVECell_example_4.png", "bbox": {"Spindle Cells": [[[425, 323], [522, 401]]], "Polygonal Cells": [[[177, 190], [238, 260]]]}}
5
+ {"image_path": "images/LIVECell_example_5.png", "bbox": {"Spindle Cells": [[[483, 330], [560, 395]]], "Polygonal Cells": [[[307, 416], [385, 493]]]}}
6
+ {"image_path": "images/LIVECell_example_6.png", "bbox": {"Round Cells": [[[500, 165], [554, 229]]], "Spindle Cells": [[[361, 266], [432, 312]], [[311, 298], [336, 367]], [[598, 363], [648, 411]]], "Polygonal Cells": [[[403, 420], [470, 487]], [[597, 187], [646, 249]]]}}
7
+ {"image_path": "images/LIVECell_example_7.png", "bbox": {"Round Cells": [[[228, 345], [285, 412]]], "Spindle Cells": [[[70, 184], [121, 240]], [[444, 348], [500, 417]]], "Polygonal Cells": [[[126, 179], [208, 232]], [[237, 190], [304, 286]], [[510, 93], [581, 169]]]}}
8
+ {"image_path": "images/LIVECell_example_8.png", "bbox": {"Round Cells": [[[64, 269], [118, 330]]], "Spindle Cells": [[[342, 164], [383, 224]], [[393, 54], [435, 104]], [[470, 228], [509, 326]], [[90, 433], [147, 494]], [[98, 125], [198, 172]]], "Polygonal Cells": [[[488, 344], [545, 409]], [[211, 413], [335, 479]]]}}
9
+ {"image_path": "images/LIVECell_example_9.png", "bbox": {"Round Cells": [[[2, 262], [58, 314]]], "Spindle Cells": [[[608, 331], [634, 465]]]}}
10
+ {"image_path": "images/LIVECell_example_10.png", "bbox": {"Round Cells": [[[345, 58], [409, 124]]], "Spindle Cells": [[[57, 274], [165, 322]], [[643, 286], [700, 344]]], "Polygonal Cells": [[[31, 296], [109, 330]]]}}
example/LIVECell/images/LIVECell_example_1.png ADDED

Git LFS Details

  • SHA256: 11233906dad5f3f58f1b0be7f003996a08119e92ae494423ffa735f2f34c501e
  • Pointer size: 131 Bytes
  • Size of remote file: 436 kB
example/LIVECell/images/LIVECell_example_10.png ADDED

Git LFS Details

  • SHA256: a3d64226e1849ee98e50a8535b17552ae26a65e04853fcd8448e11b19a6fb96c
  • Pointer size: 131 Bytes
  • Size of remote file: 437 kB
example/LIVECell/images/LIVECell_example_2.png ADDED

Git LFS Details

  • SHA256: f47ecf4f6c7a5b30e2ea8f983edc11bd0efa7ee356e8ced8610ec9ee5f2f0de4
  • Pointer size: 131 Bytes
  • Size of remote file: 442 kB
example/LIVECell/images/LIVECell_example_3.png ADDED

Git LFS Details

  • SHA256: 0162ea2d23e1f25d3b926ec2c8ba05e8f95ad16b893550c3f57a578256ed5b14
  • Pointer size: 131 Bytes
  • Size of remote file: 442 kB