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  1. .gitattributes +256 -0
  2. atlas_1000_analysis/1b8d_K/1b8d_K_R1.tpr +3 -0
  3. atlas_1000_analysis/1b8d_K/1b8d_K_R1.xtc +3 -0
  4. atlas_1000_analysis/1b8d_K/1b8d_K_R2.tpr +3 -0
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  6. atlas_1000_analysis/1b8d_K/1b8d_K_R3.tpr +3 -0
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  8. atlas_1000_analysis/1cpq_A/1cpq_A_R1.tpr +3 -0
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  12. atlas_1000_analysis/1cpq_A/1cpq_A_R3.tpr +3 -0
  13. atlas_1000_analysis/1cpq_A/1cpq_A_R3.xtc +3 -0
  14. atlas_1000_analysis/1ix9_A/1ix9_A.pdb +0 -0
  15. atlas_1000_analysis/1ix9_A/1ix9_A_Bfactor.tsv +206 -0
  16. atlas_1000_analysis/1ix9_A/1ix9_A_Neq.tsv +206 -0
  17. atlas_1000_analysis/1ix9_A/1ix9_A_RMSD.tsv +1002 -0
  18. atlas_1000_analysis/1ix9_A/1ix9_A_RMSF.tsv +206 -0
  19. atlas_1000_analysis/1ix9_A/1ix9_A_contacts.tsv +206 -0
  20. atlas_1000_analysis/1ix9_A/1ix9_A_corresp.tsv +206 -0
  21. atlas_1000_analysis/1ix9_A/1ix9_A_gyrate.tsv +1001 -0
  22. atlas_1000_analysis/1ix9_A/1ix9_A_pLDDT.tsv +206 -0
  23. atlas_1000_analysis/1ix9_A/README.txt +40 -0
  24. atlas_1000_analysis/1ix9_A/extract.done +1 -0
  25. atlas_1000_analysis/1j77_A/1j77_A_R1.tpr +3 -0
  26. atlas_1000_analysis/1j77_A/1j77_A_R1.xtc +3 -0
  27. atlas_1000_analysis/1j77_A/1j77_A_R2.tpr +3 -0
  28. atlas_1000_analysis/1j77_A/1j77_A_R2.xtc +3 -0
  29. atlas_1000_analysis/1j77_A/1j77_A_R3.tpr +3 -0
  30. atlas_1000_analysis/1j77_A/1j77_A_R3.xtc +3 -0
  31. atlas_1000_analysis/1j8r_A/1j8r_A_R1.tpr +3 -0
  32. atlas_1000_analysis/1j8r_A/1j8r_A_R1.xtc +3 -0
  33. atlas_1000_analysis/1j8r_A/1j8r_A_R2.tpr +3 -0
  34. atlas_1000_analysis/1j8r_A/1j8r_A_R2.xtc +3 -0
  35. atlas_1000_analysis/1j8r_A/1j8r_A_R3.tpr +3 -0
  36. atlas_1000_analysis/1j8r_A/1j8r_A_R3.xtc +3 -0
  37. atlas_1000_analysis/1lsl_A/1lsl_A_R1.tpr +3 -0
  38. atlas_1000_analysis/1lsl_A/1lsl_A_R1.xtc +3 -0
  39. atlas_1000_analysis/1lsl_A/1lsl_A_R2.tpr +3 -0
  40. atlas_1000_analysis/1lsl_A/1lsl_A_R2.xtc +3 -0
  41. atlas_1000_analysis/1lsl_A/1lsl_A_R3.tpr +3 -0
  42. atlas_1000_analysis/1lsl_A/1lsl_A_R3.xtc +3 -0
  43. atlas_1000_analysis/1qcs_A/1qcs_A_R1.xtc +3 -0
  44. atlas_1000_analysis/1qcs_A/1qcs_A_R2.tpr +3 -0
  45. atlas_1000_analysis/1qcs_A/1qcs_A_R2.xtc +3 -0
  46. atlas_1000_analysis/1qcs_A/1qcs_A_R3.tpr +3 -0
  47. atlas_1000_analysis/1qhv_A/1qhv_A_R1.tpr +3 -0
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  49. atlas_1000_analysis/1qhv_A/1qhv_A_R2.tpr +3 -0
  50. atlas_1000_analysis/1qhv_A/1qhv_A_R2.xtc +3 -0
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+ 16.85
63
+ 19.58
64
+ 15.03
65
+ 17.27
66
+ 22.6
67
+ 19.61
68
+ 13.23
69
+ 11.88
70
+ 9.52
71
+ 8.29
72
+ 7.79
73
+ 7.13
74
+ 6.07
75
+ 6.05
76
+ 6.07
77
+ 5.74
78
+ 5.43
79
+ 5.28
80
+ 5.36
81
+ 4.92
82
+ 4.82
83
+ 4.99
84
+ 4.97
85
+ 4.95
86
+ 4.84
87
+ 4.97
88
+ 5.47
89
+ 5.37
90
+ 5.39
91
+ 6.05
92
+ 7.32
93
+ 6.58
94
+ 8.82
95
+ 7.18
96
+ 7.52
97
+ 8.64
98
+ 7.62
99
+ 6.42
100
+ 6.94
101
+ 7.97
102
+ 7.6
103
+ 7.24
104
+ 9.77
105
+ 10.87
106
+ 10.39
107
+ 11.65
108
+ 14.14
109
+ 13.07
110
+ 11.26
111
+ 14.17
112
+ 13.29
113
+ 9.59
114
+ 9.44
115
+ 11.23
116
+ 9.64
117
+ 7.4
118
+ 9.49
119
+ 9.7
120
+ 8.57
121
+ 6.6
122
+ 6.98
123
+ 7.52
124
+ 7.15
125
+ 6.57
126
+ 6.11
127
+ 5.49
128
+ 5.67
129
+ 5.59
130
+ 5.87
131
+ 5.34
132
+ 5.51
133
+ 6.18
134
+ 7.03
135
+ 10.34
136
+ 15.5
137
+ 17.84
138
+ 11.44
139
+ 8.35
140
+ 7.73
141
+ 7.06
142
+ 7.83
143
+ 7.83
144
+ 6.22
145
+ 5.78
146
+ 5.46
147
+ 5.24
148
+ 5.78
149
+ 6.03
150
+ 6.36
151
+ 6.48
152
+ 7.05
153
+ 8.3
154
+ 9.48
155
+ 13.03
156
+ 10.04
157
+ 9.01
158
+ 9.31
159
+ 9.29
160
+ 7.72
161
+ 8.2
162
+ 6.53
163
+ 5.65
164
+ 5.37
165
+ 5.23
166
+ 6.78
167
+ 5.23
168
+ 4.95
169
+ 5.2
170
+ 5.34
171
+ 5.61
172
+ 5.86
173
+ 5.65
174
+ 6.31
175
+ 8.63
176
+ 10.48
177
+ 9.26
178
+ 8.12
179
+ 9.52
180
+ 10.01
181
+ 8.88
182
+ 7.1
183
+ 7.65
184
+ 7.71
185
+ 6.45
186
+ 6.62
187
+ 8.97
188
+ 6.77
189
+ 6.41
190
+ 6.19
191
+ 5.83
192
+ 5.48
193
+ 5.54
194
+ 5.19
195
+ 5.17
196
+ 5.35
197
+ 5.21
198
+ 5.04
199
+ 5.53
200
+ 5.5
201
+ 5.27
202
+ 5.59
203
+ 5.78
204
+ 5.8
205
+ 7.6
206
+ 9.55
atlas_1000_analysis/1ix9_A/1ix9_A_Neq.tsv ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ seq Neq_R1 Neq_R2 Neq_R3
2
+ S 1.0 1.0 1.0
3
+ Y 1.0 1.0 1.0
4
+ T 1.466 1.483 1.332
5
+ L 1.001 1.002 1.002
6
+ P 1.294 2.654 1.001
7
+ S 1.296 2.654 1.0
8
+ L 1.137 2.573 1.054
9
+ P 1.156 1.013 1.004
10
+ Y 1.515 2.311 1.313
11
+ A 1.264 1.089 1.033
12
+ Y 1.093 1.0 1.0
13
+ D 1.1 1.0 1.0
14
+ A 1.002 1.0 1.0
15
+ L 2.113 1.797 1.989
16
+ E 2.24 2.238 2.308
17
+ P 1.074 1.057 1.032
18
+ H 1.12 1.113 1.065
19
+ F 2.078 2.3 2.127
20
+ D 1.035 1.024 1.029
21
+ K 1.0 1.0 1.0
22
+ Q 1.0 1.0 1.0
23
+ T 1.0 1.0 1.0
24
+ M 1.0 1.0 1.0
25
+ E 1.0 1.0 1.0
26
+ I 1.0 1.0 1.0
27
+ H 1.0 1.0 1.0
28
+ H 1.0 1.002 1.0
29
+ T 1.001 1.0 1.0
30
+ K 1.0 1.008 1.0
31
+ H 1.0 1.002 1.0
32
+ H 1.001 1.0 1.001
33
+ Q 1.0 1.0 1.0
34
+ T 1.0 1.0 1.0
35
+ Y 1.0 1.0 1.0
36
+ V 1.0 1.0 1.0
37
+ N 1.0 1.0 1.0
38
+ N 1.0 1.0 1.0
39
+ A 1.0 1.0 1.0
40
+ N 1.0 1.0 1.0
41
+ A 1.0 1.0 1.0
42
+ A 1.0 1.0 1.0
43
+ L 1.001 1.001 1.002
44
+ E 1.005 1.003 1.01
45
+ S 1.782 1.568 1.869
46
+ L 1.174 1.069 1.146
47
+ P 1.774 1.792 1.711
48
+ E 1.016 1.024 1.021
49
+ F 1.001 1.011 1.0
50
+ A 1.014 1.015 1.009
51
+ N 2.291 2.373 2.27
52
+ L 1.164 1.141 1.117
53
+ P 1.0 1.0 1.0
54
+ V 1.0 1.0 1.0
55
+ E 1.0 1.0 1.0
56
+ E 1.0 1.0 1.0
57
+ L 1.0 1.0 1.0
58
+ I 1.001 1.005 1.0
59
+ T 1.017 1.375 1.003
60
+ K 1.001 1.128 1.002
61
+ L 1.004 1.271 1.001
62
+ D 1.085 1.446 1.083
63
+ Q 2.38 2.303 2.345
64
+ L 1.304 1.271 1.295
65
+ P 1.006 1.008 1.004
66
+ A 1.004 1.001 1.002
67
+ D 1.0 1.0 1.0
68
+ K 1.001 1.0 1.002
69
+ K 1.0 1.0 1.0
70
+ T 1.0 1.0 1.0
71
+ V 1.0 1.0 1.0
72
+ L 1.0 1.0 1.0
73
+ R 1.0 1.0 1.0
74
+ N 1.0 1.0 1.0
75
+ N 1.0 1.0 1.0
76
+ A 1.0 1.0 1.0
77
+ G 1.0 1.0 1.0
78
+ G 1.0 1.0 1.0
79
+ H 1.0 1.0 1.0
80
+ A 1.0 1.0 1.0
81
+ N 1.0 1.0 1.0
82
+ H 1.0 1.0 1.0
83
+ S 1.0 1.0 1.0
84
+ L 1.0 1.0 1.0
85
+ F 1.0 1.0 1.0
86
+ W 1.0 1.003 1.0
87
+ K 1.001 1.012 1.0
88
+ G 2.061 1.75 1.585
89
+ L 1.016 1.02 1.034
90
+ K 2.336 2.412 2.378
91
+ K 1.0 1.0 1.0
92
+ G 1.001 1.001 1.0
93
+ T 1.0 1.0 1.0
94
+ T 1.093 1.119 1.099
95
+ L 1.34 1.011 1.063
96
+ Q 1.666 1.382 1.433
97
+ G 1.342 1.011 1.067
98
+ D 1.143 1.137 1.133
99
+ L 1.792 1.657 1.695
100
+ K 1.0 1.0 1.0
101
+ A 1.0 1.0 1.0
102
+ A 1.0 1.0 1.0
103
+ I 1.0 1.0 1.0
104
+ E 1.0 1.0 1.0
105
+ R 1.0 1.0 1.0
106
+ D 1.0 1.0 1.0
107
+ F 1.001 1.0 1.0
108
+ G 1.0 1.0 1.0
109
+ S 1.005 1.002 1.0
110
+ V 1.619 1.588 1.545
111
+ D 1.0 1.0 1.0
112
+ N 1.0 1.0 1.0
113
+ F 1.0 1.0 1.0
114
+ K 1.0 1.0 1.0
115
+ A 1.0 1.0 1.0
116
+ E 1.0 1.0 1.0
117
+ F 1.0 1.0 1.0
118
+ E 1.0 1.0 1.0
119
+ K 1.0 1.0 1.0
120
+ A 1.0 1.0 1.0
121
+ A 1.0 1.0 1.001
122
+ A 1.003 1.002 1.002
123
+ S 2.475 2.612 2.877
124
+ R 1.0 1.139 1.005
125
+ F 1.377 1.52 1.715
126
+ G 1.159 1.42 1.356
127
+ S 1.397 1.599 1.694
128
+ G 1.011 1.013 1.22
129
+ W 1.0 1.0 1.05
130
+ A 1.0 1.0 1.001
131
+ W 1.0 1.0 1.0
132
+ L 1.0 1.0 1.0
133
+ V 1.0 1.0 1.0
134
+ L 1.063 1.029 1.027
135
+ K 1.087 1.718 1.037
136
+ G 1.047 1.842 1.019
137
+ D 2.077 3.047 2.008
138
+ K 1.274 2.199 1.418
139
+ L 1.0 1.001 1.002
140
+ A 1.0 1.0 1.0
141
+ V 1.0 1.0 1.0
142
+ V 1.0 1.0 1.0
143
+ S 1.0 1.0 1.0
144
+ T 1.058 1.0 1.0
145
+ A 1.073 1.014 1.011
146
+ N 1.065 1.004 1.002
147
+ Q 2.127 2.099 1.806
148
+ D 1.329 1.602 1.724
149
+ S 1.004 1.034 1.025
150
+ P 1.002 1.022 1.003
151
+ L 1.214 2.224 1.31
152
+ M 1.009 1.922 1.931
153
+ G 2.565 3.588 2.642
154
+ E 1.985 1.974 1.994
155
+ A 1.0 1.0 1.969
156
+ I 1.0 1.005 4.138
157
+ S 1.0 1.009 3.598
158
+ G 1.0 1.13 4.169
159
+ A 1.391 1.546 3.689
160
+ S 1.079 1.288 2.43
161
+ G 1.717 2.252 2.245
162
+ F 1.002 1.048 1.004
163
+ P 1.0 1.0 1.0
164
+ I 1.0 1.0 1.0
165
+ M 1.682 1.729 1.774
166
+ G 1.0 1.0 1.0
167
+ L 1.0 1.0 1.0
168
+ D 1.104 1.25 1.482
169
+ V 1.042 1.213 1.521
170
+ W 1.004 1.106 1.182
171
+ E 1.0 1.013 1.137
172
+ H 1.0 1.0 1.061
173
+ A 1.008 1.042 1.101
174
+ Y 1.0 1.001 1.02
175
+ F 1.0 1.01 1.009
176
+ L 1.0 1.004 1.005
177
+ K 1.0 1.0 1.0
178
+ F 2.175 1.158 1.199
179
+ Q 1.559 1.68 1.533
180
+ N 1.578 1.507 1.527
181
+ R 1.53 1.721 1.914
182
+ R 1.253 1.715 1.674
183
+ P 1.001 1.007 1.029
184
+ D 1.0 1.0 1.0
185
+ Y 1.0 1.0 1.0
186
+ I 1.0 1.0 1.0
187
+ K 1.0 1.0 1.0
188
+ E 1.0 1.0 1.0
189
+ F 1.0 1.0 1.0
190
+ W 1.0 1.003 1.015
191
+ N 1.0 1.003 1.015
192
+ V 3.822 3.463 2.98
193
+ V 1.011 1.022 1.05
194
+ N 1.003 1.0 1.006
195
+ W 1.0 1.0 1.0
196
+ D 1.0 1.0 1.0
197
+ E 1.0 1.0 1.0
198
+ A 1.0 1.0 1.0
199
+ A 1.0 1.0 1.0
200
+ A 1.0 1.0 1.0
201
+ R 1.0 1.0 1.0
202
+ F 1.118 1.0 1.0
203
+ A 3.34 1.0 1.0
204
+ A 3.053 1.561 1.969
205
+ K 1.0 1.0 1.0
206
+ K 1.0 1.0 1.0
atlas_1000_analysis/1ix9_A/1ix9_A_RMSD.tsv ADDED
@@ -0,0 +1,1002 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ time RMSD_R1 RMSD_R2 RMSD_R3
2
+ 0.0 0.0 0.0 0.0
3
+ 0.1 0.93 0.68 0.79
4
+ 0.2 1.01 0.93 0.89
5
+ 0.3 1.06 0.82 0.76
6
+ 0.4 0.93 0.75 0.89
7
+ 0.5 0.98 0.81 0.78
8
+ 0.6 1.05 0.83 1.04
9
+ 0.7 1.28 0.95 1.05
10
+ 0.8 1.11 0.93 0.95
11
+ 0.9 1.15 1.19 1.16
12
+ 1.0 1.04 1.28 1.05
13
+ 1.1 1.19 1.44 0.91
14
+ 1.2 1.06 1.07 0.84
15
+ 1.3 1.16 1.42 0.89
16
+ 1.4 1.12 1.27 0.92
17
+ 1.5 1.19 1.32 0.98
18
+ 1.6 1.06 1.21 1.07
19
+ 1.7 0.92 1.19 0.95
20
+ 1.8 1.05 1.4 0.96
21
+ 1.9 1.18 1.63 0.95
22
+ 2.0 1.13 1.4 0.99
23
+ 2.1 1.18 1.03 1.16
24
+ 2.2 1.32 1.05 1.13
25
+ 2.3 1.15 1.01 0.98
26
+ 2.4 1.42 0.9 1.08
27
+ 2.5 1.53 1.03 0.95
28
+ 2.6 1.63 0.85 1.06
29
+ 2.7 1.38 1.12 0.95
30
+ 2.8 1.44 1.0 0.85
31
+ 2.9 1.0 0.86 0.91
32
+ 3.0 1.06 0.98 0.96
33
+ 3.1 1.1 1.03 1.05
34
+ 3.2 1.11 0.98 1.19
35
+ 3.3 1.17 0.98 1.14
36
+ 3.4 1.12 0.98 1.09
37
+ 3.5 1.02 0.93 1.03
38
+ 3.6 1.05 0.93 1.22
39
+ 3.7 1.1 1.07 1.21
40
+ 3.8 0.93 1.16 1.1
41
+ 3.9 1.16 1.16 1.43
42
+ 4.0 1.09 0.92 1.33
43
+ 4.1 1.29 0.98 1.16
44
+ 4.2 1.2 0.99 1.11
45
+ 4.3 1.21 1.02 1.2
46
+ 4.4 1.13 1.02 1.03
47
+ 4.5 1.26 0.92 1.1
48
+ 4.6 1.1 0.96 1.04
49
+ 4.7 1.04 0.93 0.97
50
+ 4.8 0.96 0.99 1.24
51
+ 4.9 1.12 1.04 1.32
52
+ 5.0 1.15 1.1 1.36
53
+ 5.1 0.95 0.97 1.27
54
+ 5.2 0.89 1.01 1.37
55
+ 5.3 0.98 0.91 1.29
56
+ 5.4 0.97 0.93 1.22
57
+ 5.5 0.86 0.91 1.15
58
+ 5.6 0.87 1.02 1.39
59
+ 5.7 0.98 1.0 1.48
60
+ 5.8 1.05 0.94 1.23
61
+ 5.9 0.94 1.01 1.5
62
+ 6.0 1.05 0.89 1.39
63
+ 6.1 1.25 0.87 1.33
64
+ 6.2 1.17 1.0 1.12
65
+ 6.3 1.23 1.1 1.23
66
+ 6.4 1.3 1.11 1.13
67
+ 6.5 1.23 1.09 1.28
68
+ 6.6 1.15 0.84 1.3
69
+ 6.7 1.21 0.91 1.08
70
+ 6.8 1.21 0.89 1.37
71
+ 6.9 1.07 0.91 1.18
72
+ 7.0 0.99 0.88 1.34
73
+ 7.1 1.2 1.08 1.22
74
+ 7.2 1.08 1.03 1.33
75
+ 7.3 1.07 0.97 1.2
76
+ 7.4 1.18 0.96 1.24
77
+ 7.5 0.97 0.96 1.23
78
+ 7.6 0.82 1.08 1.23
79
+ 7.7 0.9 0.99 1.17
80
+ 7.8 0.97 1.15 1.16
81
+ 7.9 1.11 1.16 1.49
82
+ 8.0 1.12 1.41 1.55
83
+ 8.1 1.07 1.23 1.37
84
+ 8.2 1.0 1.18 1.24
85
+ 8.3 1.19 1.43 1.34
86
+ 8.4 1.1 1.16 1.36
87
+ 8.5 0.9 1.2 1.38
88
+ 8.6 0.93 1.13 1.32
89
+ 8.7 0.95 1.26 1.2
90
+ 8.8 1.02 1.36 1.18
91
+ 8.9 1.25 1.22 1.08
92
+ 9.0 1.06 1.34 1.17
93
+ 9.1 1.15 1.01 1.14
94
+ 9.2 1.13 1.18 1.41
95
+ 9.3 1.06 1.01 1.29
96
+ 9.4 1.07 1.0 1.21
97
+ 9.5 1.09 0.97 1.21
98
+ 9.6 0.98 1.18 1.18
99
+ 9.7 1.01 1.05 1.11
100
+ 9.8 1.01 1.11 0.99
101
+ 9.9 0.91 1.08 1.16
102
+ 10.0 1.08 1.06 1.23
103
+ 10.1 1.1 1.0 1.43
104
+ 10.2 1.29 1.1 1.28
105
+ 10.3 1.1 0.9 1.1
106
+ 10.4 1.32 0.86 1.07
107
+ 10.5 1.12 0.95 1.2
108
+ 10.6 1.13 1.04 1.21
109
+ 10.7 1.07 0.94 1.25
110
+ 10.8 1.15 1.04 1.27
111
+ 10.9 1.15 1.08 1.22
112
+ 11.0 1.09 0.95 1.27
113
+ 11.1 0.93 1.07 1.11
114
+ 11.2 0.96 0.99 1.07
115
+ 11.3 1.03 1.02 1.02
116
+ 11.4 1.2 0.94 1.08
117
+ 11.5 1.08 1.15 1.02
118
+ 11.6 1.02 1.1 1.33
119
+ 11.7 1.17 1.04 1.11
120
+ 11.8 1.2 1.05 1.15
121
+ 11.9 1.12 0.98 1.21
122
+ 12.0 1.21 0.93 1.15
123
+ 12.1 1.09 1.18 1.18
124
+ 12.2 1.12 1.23 1.18
125
+ 12.3 1.23 0.87 1.16
126
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127
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581
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582
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583
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584
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585
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586
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587
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588
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589
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590
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592
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593
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594
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595
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596
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597
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598
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599
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600
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601
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602
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603
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604
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606
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607
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608
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610
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611
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612
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613
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614
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615
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616
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617
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618
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619
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620
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621
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622
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623
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624
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625
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626
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627
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628
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629
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630
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631
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632
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633
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635
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636
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637
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638
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639
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640
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641
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642
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643
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644
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645
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646
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647
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648
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649
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650
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651
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652
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653
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654
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655
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656
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657
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658
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659
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660
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661
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662
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663
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664
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665
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666
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667
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668
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669
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670
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671
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672
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673
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674
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675
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676
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677
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678
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679
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680
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681
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682
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683
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684
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685
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686
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687
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688
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689
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690
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691
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692
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693
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694
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695
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696
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697
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698
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699
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700
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701
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703
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705
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706
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710
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712
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713
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714
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715
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716
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717
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718
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719
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721
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722
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723
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724
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725
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726
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727
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728
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729
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730
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731
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732
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733
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734
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735
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736
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737
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738
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741
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742
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743
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745
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747
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748
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749
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750
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751
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752
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753
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754
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755
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756
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757
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758
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760
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761
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762
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763
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764
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765
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766
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767
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768
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769
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770
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771
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772
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773
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774
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775
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776
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777
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778
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779
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780
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781
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782
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783
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784
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785
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786
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787
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788
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789
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790
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791
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792
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793
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794
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795
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796
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797
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798
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799
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800
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801
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802
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803
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804
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805
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806
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807
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808
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809
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810
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811
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812
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813
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814
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815
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816
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817
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818
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819
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822
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824
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825
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826
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827
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828
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829
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830
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831
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832
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833
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834
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835
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836
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837
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838
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839
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840
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841
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842
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843
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844
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845
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846
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847
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848
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849
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850
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851
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852
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853
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854
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855
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856
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857
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858
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859
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860
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861
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862
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863
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864
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865
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866
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867
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868
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869
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870
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871
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872
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873
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874
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875
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876
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877
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878
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879
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880
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881
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882
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883
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884
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885
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886
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887
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888
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889
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890
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891
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892
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893
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894
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895
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896
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897
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898
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899
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900
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901
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902
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903
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904
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905
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906
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907
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908
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909
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910
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911
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912
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913
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914
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915
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916
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917
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918
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919
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920
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921
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922
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923
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925
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926
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927
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928
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929
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931
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932
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933
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934
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935
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936
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937
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938
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939
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940
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941
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942
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944
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945
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947
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948
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949
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950
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955
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960
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961
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962
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963
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964
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965
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966
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967
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968
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969
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970
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971
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972
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973
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974
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975
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976
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977
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978
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979
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980
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981
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982
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983
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984
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985
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986
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987
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988
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989
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990
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991
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992
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993
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994
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995
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996
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997
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998
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999
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1000
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1001
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1002
+ 100.0 1.72 1.43 1.34
atlas_1000_analysis/1ix9_A/1ix9_A_RMSF.tsv ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ seq RMSF_R1 RMSF_R2 RMSF_R3
2
+ S 1.11 1.09 1.1
3
+ Y 0.77 0.72 0.73
4
+ T 0.96 0.87 0.88
5
+ L 0.86 0.86 0.81
6
+ P 1.14 1.78 1.04
7
+ S 1.61 2.22 1.41
8
+ L 1.81 1.97 1.06
9
+ P 1.56 2.85 1.19
10
+ Y 1.4 2.09 1.05
11
+ A 1.34 1.33 0.96
12
+ Y 1.18 1.04 0.86
13
+ D 1.4 1.11 0.93
14
+ A 1.28 1.08 0.92
15
+ L 0.78 0.72 0.74
16
+ E 0.93 0.7 0.76
17
+ P 1.0 0.76 0.8
18
+ H 0.83 0.66 0.7
19
+ F 0.93 0.75 0.77
20
+ D 1.05 0.9 0.91
21
+ K 0.93 0.87 0.86
22
+ Q 1.03 0.93 0.94
23
+ T 1.04 0.87 0.9
24
+ M 0.82 0.74 0.77
25
+ E 0.77 0.76 0.78
26
+ I 0.88 0.89 0.85
27
+ H 0.9 0.85 0.84
28
+ H 0.81 0.77 0.82
29
+ T 0.9 0.87 0.97
30
+ K 0.85 0.88 0.9
31
+ H 0.83 0.84 0.81
32
+ H 0.64 0.63 0.6
33
+ Q 0.66 0.66 0.67
34
+ T 0.7 0.7 0.72
35
+ Y 0.59 0.6 0.58
36
+ V 0.57 0.59 0.57
37
+ N 0.68 0.68 0.7
38
+ N 0.67 0.66 0.71
39
+ A 0.62 0.6 0.64
40
+ N 0.72 0.66 0.71
41
+ A 0.86 0.76 0.86
42
+ A 0.85 0.75 0.87
43
+ L 0.95 0.76 0.94
44
+ E 1.21 1.0 1.15
45
+ S 1.44 1.24 1.28
46
+ L 1.16 1.06 1.06
47
+ P 1.62 1.45 1.55
48
+ E 1.55 1.45 1.45
49
+ F 1.05 0.96 1.04
50
+ A 1.23 1.14 1.26
51
+ N 1.18 1.11 1.15
52
+ L 0.92 0.88 0.87
53
+ P 0.81 0.8 0.77
54
+ V 0.61 0.6 0.61
55
+ E 0.73 0.71 0.73
56
+ E 0.79 0.79 0.78
57
+ L 0.62 0.64 0.61
58
+ I 0.59 0.6 0.58
59
+ T 0.98 0.89 0.9
60
+ K 1.07 1.13 0.98
61
+ L 1.05 1.01 0.97
62
+ D 1.27 1.29 1.18
63
+ Q 1.36 1.39 1.41
64
+ L 1.17 1.13 1.16
65
+ P 1.41 1.34 1.37
66
+ A 1.53 1.4 1.56
67
+ D 1.44 1.41 1.43
68
+ K 1.02 1.0 0.93
69
+ K 0.87 0.82 0.82
70
+ T 0.83 0.82 0.85
71
+ V 0.77 0.79 0.8
72
+ L 0.66 0.66 0.63
73
+ R 0.65 0.66 0.62
74
+ N 0.57 0.58 0.58
75
+ N 0.53 0.5 0.53
76
+ A 0.49 0.48 0.49
77
+ G 0.51 0.5 0.49
78
+ G 0.54 0.51 0.51
79
+ H 0.46 0.45 0.44
80
+ A 0.46 0.45 0.44
81
+ N 0.48 0.45 0.46
82
+ H 0.5 0.47 0.49
83
+ S 0.52 0.53 0.51
84
+ L 0.54 0.56 0.52
85
+ F 0.53 0.54 0.52
86
+ W 0.64 0.57 0.56
87
+ K 0.75 0.83 0.67
88
+ G 0.67 0.78 0.64
89
+ L 0.66 0.69 0.63
90
+ K 0.63 0.68 0.65
91
+ K 0.79 0.81 0.8
92
+ G 0.89 1.02 0.96
93
+ T 0.69 0.66 0.68
94
+ T 0.81 0.77 0.77
95
+ L 0.71 0.66 0.66
96
+ Q 0.93 0.76 0.78
97
+ G 0.96 0.86 0.85
98
+ D 0.81 0.74 0.74
99
+ L 0.66 0.61 0.61
100
+ K 0.65 0.6 0.61
101
+ A 0.68 0.63 0.65
102
+ A 0.62 0.57 0.59
103
+ I 0.54 0.51 0.52
104
+ E 0.64 0.61 0.63
105
+ R 0.66 0.65 0.68
106
+ D 0.59 0.6 0.62
107
+ F 0.58 0.6 0.6
108
+ G 0.72 0.73 0.74
109
+ S 0.67 0.68 0.68
110
+ V 0.61 0.61 0.61
111
+ D 0.69 0.68 0.68
112
+ N 0.63 0.64 0.64
113
+ F 0.49 0.5 0.51
114
+ K 0.51 0.52 0.5
115
+ A 0.56 0.58 0.56
116
+ E 0.5 0.54 0.56
117
+ F 0.44 0.5 0.51
118
+ E 0.52 0.56 0.53
119
+ K 0.56 0.61 0.58
120
+ A 0.54 0.59 0.59
121
+ A 0.58 0.61 0.65
122
+ A 0.76 0.74 0.77
123
+ S 0.82 0.8 0.8
124
+ R 0.72 0.8 0.82
125
+ F 0.99 1.07 1.19
126
+ G 0.84 1.01 1.1
127
+ S 0.8 0.84 0.9
128
+ G 0.58 0.54 0.61
129
+ W 0.48 0.44 0.5
130
+ A 0.45 0.44 0.46
131
+ W 0.42 0.41 0.44
132
+ L 0.38 0.39 0.4
133
+ V 0.45 0.47 0.49
134
+ L 0.52 0.54 0.54
135
+ K 0.83 0.8 0.81
136
+ G 1.14 1.35 1.16
137
+ D 1.12 1.14 1.12
138
+ K 0.75 0.79 0.74
139
+ L 0.5 0.55 0.52
140
+ A 0.48 0.53 0.52
141
+ V 0.44 0.43 0.45
142
+ V 0.48 0.5 0.52
143
+ S 0.48 0.46 0.52
144
+ T 0.52 0.51 0.58
145
+ A 0.58 0.57 0.63
146
+ N 0.61 0.57 0.64
147
+ Q 0.52 0.5 0.54
148
+ D 0.52 0.5 0.56
149
+ S 0.54 0.64 0.75
150
+ P 0.57 0.64 0.67
151
+ L 0.6 0.69 0.66
152
+ M 0.65 0.67 0.68
153
+ G 0.83 1.18 1.26
154
+ E 0.98 1.23 1.61
155
+ A 1.15 1.49 2.26
156
+ I 0.89 1.09 1.39
157
+ S 0.8 1.05 2.32
158
+ G 0.91 1.17 1.8
159
+ A 0.78 1.03 1.36
160
+ S 0.76 1.0 1.04
161
+ G 0.67 0.82 0.8
162
+ F 0.57 0.59 0.57
163
+ P 0.5 0.51 0.51
164
+ I 0.48 0.49 0.5
165
+ M 0.48 0.52 0.52
166
+ G 0.56 0.6 0.62
167
+ L 0.52 0.57 0.63
168
+ D 0.56 0.69 0.71
169
+ V 0.56 0.71 0.73
170
+ W 0.63 1.27 1.18
171
+ E 0.85 1.36 1.43
172
+ H 1.07 1.53 1.71
173
+ A 1.27 1.5 1.68
174
+ Y 1.05 1.32 1.46
175
+ F 1.04 1.4 1.51
176
+ L 1.45 1.73 1.89
177
+ K 1.28 1.5 1.61
178
+ F 1.16 1.36 1.45
179
+ Q 1.45 1.43 1.47
180
+ N 1.24 1.3 1.27
181
+ R 1.03 1.11 1.13
182
+ R 0.84 0.87 0.98
183
+ P 0.83 0.74 0.83
184
+ D 0.81 0.71 0.71
185
+ Y 0.65 0.58 0.6
186
+ I 0.59 0.53 0.59
187
+ K 0.66 0.6 0.62
188
+ E 0.64 0.58 0.57
189
+ F 0.57 0.56 0.53
190
+ W 0.56 0.58 0.56
191
+ N 0.61 0.59 0.59
192
+ V 0.57 0.54 0.54
193
+ V 0.58 0.58 0.52
194
+ N 0.54 0.52 0.51
195
+ W 0.53 0.47 0.48
196
+ D 0.66 0.61 0.6
197
+ E 0.64 0.62 0.57
198
+ A 0.54 0.51 0.48
199
+ A 0.62 0.56 0.54
200
+ A 0.74 0.65 0.62
201
+ R 0.67 0.59 0.57
202
+ F 0.64 0.58 0.57
203
+ A 0.9 0.77 0.76
204
+ A 1.08 0.92 0.9
205
+ K 2.68 0.99 1.03
206
+ K 5.34 1.8 2.05
atlas_1000_analysis/1ix9_A/1ix9_A_contacts.tsv ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ seq nb_chain nb_ligand nb_ion nb_nucleotide name_chain name_ligand name_ion name_nucleotide
2
+ S 0 0 0 0 - - - -
3
+ Y 0 0 0 0 - - - -
4
+ T 0 0 0 0 - - - -
5
+ L 0 0 0 0 - - - -
6
+ P 0 0 0 0 - - - -
7
+ S 0 0 0 0 - - - -
8
+ L 0 0 0 0 - - - -
9
+ P 0 0 0 0 - - - -
10
+ Y 0 0 0 0 - - - -
11
+ A 0 0 0 0 - - - -
12
+ Y 0 0 0 0 - - - -
13
+ D 0 0 0 0 - - - -
14
+ A 0 0 0 0 - - - -
15
+ L 0 0 0 0 - - - -
16
+ E 0 0 0 0 - - - -
17
+ P 0 0 0 0 - - - -
18
+ H 0 0 0 0 - - - -
19
+ F 0 0 0 0 - - - -
20
+ D 0 0 0 0 - - - -
21
+ K 0 0 0 0 - - - -
22
+ Q 0 0 0 0 - - - -
23
+ T 1 0 0 0 B:PHE,174 - - -
24
+ M 0 0 0 0 - - - -
25
+ E 0 0 0 0 - - - -
26
+ I 1 0 0 0 B:GLN,178 - - -
27
+ H 0 0 0 0 - - - -
28
+ H 0 0 0 0 - - - -
29
+ T 0 0 0 0 - - - -
30
+ K 1 0 0 0 B:ASN,179 - - -
31
+ H 1 0 0 0 B:ASN,179 - - -
32
+ H 0 0 0 0 - - - -
33
+ Q 0 0 0 0 - - - -
34
+ T 1 0 0 0 B:ASN,179 - - -
35
+ Y 0 0 0 0 - - - -
36
+ V 0 0 0 0 - - - -
37
+ N 0 0 0 0 - - - -
38
+ N 0 0 0 0 - - - -
39
+ A 0 0 0 0 - - - -
40
+ N 0 0 0 0 - - - -
41
+ A 0 0 0 0 - - - -
42
+ A 0 0 0 0 - - - -
43
+ L 0 0 0 0 - - - -
44
+ E 0 0 0 0 - - - -
45
+ S 0 0 0 0 - - - -
46
+ L 0 0 0 0 - - - -
47
+ P 0 0 0 0 - - - -
48
+ E 0 0 0 0 - - - -
49
+ F 0 0 0 0 - - - -
50
+ A 0 0 0 0 - - - -
51
+ N 0 0 0 0 - - - -
52
+ L 0 0 0 0 - - - -
53
+ P 0 0 0 0 - - - -
54
+ V 0 0 0 0 - - - -
55
+ E 0 0 0 0 - - - -
56
+ E 0 0 0 0 - - - -
57
+ L 0 0 0 0 - - - -
58
+ I 0 0 0 0 - - - -
59
+ T 0 0 0 0 - - - -
60
+ K 0 0 0 0 - - - -
61
+ L 0 0 0 0 - - - -
62
+ D 0 0 0 0 - - - -
63
+ Q 0 0 0 0 - - - -
64
+ L 0 0 0 0 - - - -
65
+ P 0 0 0 0 - - - -
66
+ A 0 0 0 0 - - - -
67
+ D 0 0 0 0 - - - -
68
+ K 0 0 0 0 - - - -
69
+ K 0 0 0 0 - - - -
70
+ T 0 0 0 0 - - - -
71
+ V 0 0 0 0 - - - -
72
+ L 0 0 0 0 - - - -
73
+ R 0 0 0 0 - - - -
74
+ N 1 0 0 0 B:PHE,124 - - -
75
+ N 1 0 0 0 B:PHE,124 - - -
76
+ A 0 0 0 0 - - - -
77
+ G 0 0 0 0 - - - -
78
+ G 0 0 0 0 - - - -
79
+ H 0 0 0 0 - - - -
80
+ A 0 0 0 0 - - - -
81
+ N 0 0 0 0 - - - -
82
+ H 0 0 0 0 - - - -
83
+ S 0 0 0 0 - - - -
84
+ L 0 0 0 0 - - - -
85
+ F 0 0 0 0 - - - -
86
+ W 0 0 0 0 - - - -
87
+ K 0 0 0 0 - - - -
88
+ G 0 0 0 0 - - - -
89
+ L 0 0 0 0 - - - -
90
+ K 0 0 0 0 - - - -
91
+ K 0 0 0 0 - - - -
92
+ G 0 0 0 0 - - - -
93
+ T 0 0 0 0 - - - -
94
+ T 0 0 0 0 - - - -
95
+ L 0 0 0 0 - - - -
96
+ Q 0 0 0 0 - - - -
97
+ G 0 0 0 0 - - - -
98
+ D 0 0 0 0 - - - -
99
+ L 0 0 0 0 - - - -
100
+ K 0 0 0 0 - - - -
101
+ A 0 0 0 0 - - - -
102
+ A 0 0 0 0 - - - -
103
+ I 0 0 0 0 - - - -
104
+ E 0 0 0 0 - - - -
105
+ R 0 0 0 0 - - - -
106
+ D 0 0 0 0 - - - -
107
+ F 0 0 0 0 - - - -
108
+ G 0 0 0 0 - - - -
109
+ S 0 0 0 0 - - - -
110
+ V 0 0 0 0 - - - -
111
+ D 0 0 0 0 - - - -
112
+ N 0 0 0 0 - - - -
113
+ F 0 0 0 0 - - - -
114
+ K 0 0 0 0 - - - -
115
+ A 0 0 0 0 - - - -
116
+ E 0 0 0 0 - - - -
117
+ F 0 0 0 0 - - - -
118
+ E 0 0 0 0 - - - -
119
+ K 0 0 0 0 - - - -
120
+ A 0 0 0 0 - - - -
121
+ A 0 0 0 0 - - - -
122
+ A 0 0 0 0 - - - -
123
+ S 0 0 0 0 - - - -
124
+ R 0 0 0 0 - - - -
125
+ F 3 0 0 0 B:ASN,73;B:ASN,145;B:TRP,169 - - -
126
+ G 3 0 0 0 B:SER,126;B:ASN,145;B:TRP,169 - - -
127
+ S 3 0 0 0 B:GLY,125;B:SER,126;B:ASN,145 - - -
128
+ G 0 0 0 0 - - - -
129
+ W 0 0 0 0 - - - -
130
+ A 0 0 0 0 - - - -
131
+ W 0 0 0 0 - - - -
132
+ L 0 0 0 0 - - - -
133
+ V 0 0 0 0 - - - -
134
+ L 0 0 0 0 - - - -
135
+ K 0 0 0 0 - - - -
136
+ G 0 0 0 0 - - - -
137
+ D 0 0 0 0 - - - -
138
+ K 0 0 0 0 - - - -
139
+ L 0 0 0 0 - - - -
140
+ A 0 0 0 0 - - - -
141
+ V 0 0 0 0 - - - -
142
+ V 0 0 0 0 - - - -
143
+ S 0 0 0 0 - - - -
144
+ T 0 0 0 0 - - - -
145
+ A 0 0 0 0 - - - -
146
+ N 2 0 0 0 B:PHE,124;B:GLY,125 - - -
147
+ Q 1 0 0 0 B:PHE,124 - - -
148
+ D 0 0 0 0 - - - -
149
+ S 0 0 0 0 - - - -
150
+ P 0 0 0 0 - - - -
151
+ L 0 0 0 0 - - - -
152
+ M 0 0 0 0 - - - -
153
+ G 0 0 0 0 - - - -
154
+ E 0 0 0 0 - - - -
155
+ A 0 0 0 0 - - - -
156
+ I 0 0 0 0 - - - -
157
+ S 0 0 0 0 - - - -
158
+ G 0 0 0 0 - - - -
159
+ A 0 0 0 0 - - - -
160
+ S 0 0 0 0 - - - -
161
+ G 0 0 0 0 - - - -
162
+ F 0 0 0 0 - - - -
163
+ P 0 0 0 0 - - - -
164
+ I 0 0 0 0 - - - -
165
+ M 0 0 0 0 - - - -
166
+ G 0 0 0 0 - - - -
167
+ L 0 0 0 0 - - - -
168
+ D 0 0 1 0 - - A:MN,206 -
169
+ V 0 0 0 0 - - - -
170
+ W 1 0 1 0 B:GLU,170 - A:MN,206 -
171
+ E 1 0 0 0 B:GLU,170 - - -
172
+ H 2 0 0 0 B:GLU,170;B:PHE,174 - - -
173
+ A 0 0 1 0 - - A:MN,206 -
174
+ Y 0 0 0 0 - - - -
175
+ F 1 0 0 0 B:PHE,174 - - -
176
+ L 2 0 0 0 B:PHE,174;B:LEU,175 - - -
177
+ K 0 0 0 0 - - - -
178
+ F 0 0 0 0 - - - -
179
+ Q 2 0 0 0 B:ILE,25;B:HIS,30 - - -
180
+ N 2 0 0 0 B:LYS,29;B:HIS,30 - - -
181
+ R 0 0 0 0 - - - -
182
+ R 0 0 0 0 - - - -
183
+ P 0 0 0 0 - - - -
184
+ D 0 0 0 0 - - - -
185
+ Y 0 0 0 0 - - - -
186
+ I 0 0 0 0 - - - -
187
+ K 0 0 0 0 - - - -
188
+ E 0 0 0 0 - - - -
189
+ F 0 0 0 0 - - - -
190
+ W 0 0 0 0 - - - -
191
+ N 0 0 0 0 - - - -
192
+ V 0 0 0 0 - - - -
193
+ V 0 0 0 0 - - - -
194
+ N 0 0 0 0 - - - -
195
+ W 0 0 0 0 - - - -
196
+ D 0 0 0 0 - - - -
197
+ E 0 0 0 0 - - - -
198
+ A 0 0 0 0 - - - -
199
+ A 0 0 0 0 - - - -
200
+ A 0 0 0 0 - - - -
201
+ R 0 0 0 0 - - - -
202
+ F 0 0 0 0 - - - -
203
+ A 0 0 0 0 - - - -
204
+ A 0 0 0 0 - - - -
205
+ K 0 0 0 0 - - - -
206
+ K 0 0 0 0 - - - -
atlas_1000_analysis/1ix9_A/1ix9_A_corresp.tsv ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ UnP_seq PDB_seq PDB_num CIF_num UnP_num gap hetatm corrected no_fullbb no_ca
2
+ S S 1 1 1 0 0 0 0 0
3
+ Y Y 2 2 2 0 0 0 0 0
4
+ T T 3 3 3 0 0 0 0 0
5
+ L L 4 4 4 0 0 0 0 0
6
+ P P 5 5 5 0 0 0 0 0
7
+ S S 6 6 6 0 0 0 0 0
8
+ L L 7 7 7 0 0 0 0 0
9
+ P P 8 8 8 0 0 0 0 0
10
+ Y Y 9 9 9 0 0 0 0 0
11
+ A A 10 10 10 0 0 0 0 0
12
+ Y Y 11 11 11 0 0 0 0 0
13
+ D D 12 12 12 0 0 0 0 0
14
+ A A 13 13 13 0 0 0 0 0
15
+ L L 14 14 14 0 0 0 0 0
16
+ E E 15 15 15 0 0 0 0 0
17
+ P P 16 16 16 0 0 0 0 0
18
+ H H 17 17 17 0 0 0 0 0
19
+ F F 18 18 18 0 0 0 0 0
20
+ D D 19 19 19 0 0 0 0 0
21
+ K K 20 20 20 0 0 0 0 0
22
+ Q Q 21 21 21 0 0 0 0 0
23
+ T T 22 22 22 0 0 0 0 0
24
+ M M 23 23 23 0 0 0 0 0
25
+ E E 24 24 24 0 0 0 0 0
26
+ I I 25 25 25 0 0 0 0 0
27
+ H H 26 26 26 0 0 0 0 0
28
+ H H 27 27 27 0 0 0 0 0
29
+ T T 28 28 28 0 0 0 0 0
30
+ K K 29 29 29 0 0 0 0 0
31
+ H H 30 30 30 0 0 0 0 0
32
+ H H 31 31 31 0 0 0 0 0
33
+ Q Q 32 32 32 0 0 0 0 0
34
+ T T 33 33 33 0 0 0 0 0
35
+ Y Y 34 34 34 0 0 0 0 0
36
+ V V 35 35 35 0 0 0 0 0
37
+ N N 36 36 36 0 0 0 0 0
38
+ N N 37 37 37 0 0 0 0 0
39
+ A A 38 38 38 0 0 0 0 0
40
+ N N 39 39 39 0 0 0 0 0
41
+ A A 40 40 40 0 0 0 0 0
42
+ A A 41 41 41 0 0 0 0 0
43
+ L L 42 42 42 0 0 0 0 0
44
+ E E 43 43 43 0 0 0 0 0
45
+ S S 44 44 44 0 0 0 0 0
46
+ L L 45 45 45 0 0 0 0 0
47
+ P P 46 46 46 0 0 0 0 0
48
+ E E 47 47 47 0 0 0 0 0
49
+ F F 48 48 48 0 0 0 0 0
50
+ A A 49 49 49 0 0 0 0 0
51
+ N N 50 50 50 0 0 0 0 0
52
+ L L 51 51 51 0 0 0 0 0
53
+ P P 52 52 52 0 0 0 0 0
54
+ V V 53 53 53 0 0 0 0 0
55
+ E E 54 54 54 0 0 0 0 0
56
+ E E 55 55 55 0 0 0 0 0
57
+ L L 56 56 56 0 0 0 0 0
58
+ I I 57 57 57 0 0 0 0 0
59
+ T T 58 58 58 0 0 0 0 0
60
+ K K 59 59 59 0 0 0 0 0
61
+ L L 60 60 60 0 0 0 0 0
62
+ D D 61 61 61 0 0 0 0 0
63
+ Q Q 62 62 62 0 0 0 0 0
64
+ L L 63 63 63 0 0 0 0 0
65
+ P P 64 64 64 0 0 0 0 0
66
+ A A 65 65 65 0 0 0 0 0
67
+ D D 66 66 66 0 0 0 0 0
68
+ K K 67 67 67 0 0 0 0 0
69
+ K K 68 68 68 0 0 0 0 0
70
+ T T 69 69 69 0 0 0 0 0
71
+ V V 70 70 70 0 0 0 0 0
72
+ L L 71 71 71 0 0 0 0 0
73
+ R R 72 72 72 0 0 0 0 0
74
+ N N 73 73 73 0 0 0 0 0
75
+ N N 74 74 74 0 0 0 0 0
76
+ A A 75 75 75 0 0 0 0 0
77
+ G G 76 76 76 0 0 0 0 0
78
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atlas_1000_analysis/1ix9_A/1ix9_A_gyrate.tsv ADDED
@@ -0,0 +1,1001 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ time gyr_R1 gyr_R2 gyr_R3
2
+ 0.1 16.92 16.88 16.99
3
+ 0.2 16.93 16.92 16.93
4
+ 0.3 16.95 16.91 16.88
5
+ 0.4 16.89 16.87 16.89
6
+ 0.5 16.88 16.85 16.84
7
+ 0.6 16.9 16.87 16.97
8
+ 0.7 16.94 16.86 16.84
9
+ 0.8 16.88 16.88 16.77
10
+ 0.9 16.89 16.89 16.7
11
+ 1.0 16.92 16.89 16.89
12
+ 1.1 16.94 17.1 16.9
13
+ 1.2 16.92 16.9 16.86
14
+ 1.3 16.95 16.83 16.86
15
+ 1.4 16.96 16.96 16.99
16
+ 1.5 16.99 16.97 16.91
17
+ 1.6 16.92 16.96 16.98
18
+ 1.7 16.87 16.92 16.86
19
+ 1.8 16.99 17.01 16.94
20
+ 1.9 17.01 17.13 16.93
21
+ 2.0 17.02 17.0 16.91
22
+ 2.1 17.04 16.95 17.0
23
+ 2.2 17.08 17.0 17.0
24
+ 2.3 16.98 16.96 17.01
25
+ 2.4 17.1 16.9 16.95
26
+ 2.5 17.08 16.98 16.86
27
+ 2.6 17.18 16.9 16.9
28
+ 2.7 17.09 17.02 17.01
29
+ 2.8 17.17 16.9 16.94
30
+ 2.9 17.0 16.87 16.95
31
+ 3.0 16.92 16.88 16.97
32
+ 3.1 16.94 16.95 16.84
33
+ 3.2 16.92 16.86 17.1
34
+ 3.3 16.97 16.83 16.99
35
+ 3.4 16.94 16.95 17.02
36
+ 3.5 16.99 16.82 17.04
37
+ 3.6 16.97 16.81 17.14
38
+ 3.7 16.96 16.97 17.09
39
+ 3.8 16.91 16.94 17.02
40
+ 3.9 16.85 16.97 17.04
41
+ 4.0 16.98 16.96 17.04
42
+ 4.1 16.96 16.89 17.0
43
+ 4.2 16.96 16.86 16.9
44
+ 4.3 16.98 16.86 16.97
45
+ 4.4 16.98 16.88 16.89
46
+ 4.5 17.08 16.93 16.96
47
+ 4.6 17.07 16.88 16.95
48
+ 4.7 16.9 16.89 16.91
49
+ 4.8 16.99 16.8 16.97
50
+ 4.9 16.88 16.94 16.95
51
+ 5.0 17.06 16.87 17.02
52
+ 5.1 17.0 16.88 16.96
53
+ 5.2 16.98 16.92 16.97
54
+ 5.3 16.99 16.88 17.04
55
+ 5.4 16.99 16.86 16.97
56
+ 5.5 16.96 16.96 16.96
57
+ 5.6 16.95 16.97 17.05
58
+ 5.7 16.91 16.83 17.07
59
+ 5.8 16.88 16.91 17.07
60
+ 5.9 16.86 16.98 17.08
61
+ 6.0 16.92 16.96 17.07
62
+ 6.1 16.89 16.9 17.04
63
+ 6.2 16.93 16.99 16.98
64
+ 6.3 17.04 17.04 17.05
65
+ 6.4 17.03 16.99 16.95
66
+ 6.5 16.96 17.09 17.01
67
+ 6.6 16.97 16.98 17.01
68
+ 6.7 16.97 16.97 16.86
69
+ 6.8 17.0 16.93 17.02
70
+ 6.9 17.0 16.97 16.98
71
+ 7.0 17.0 16.96 17.01
72
+ 7.1 16.93 16.93 17.09
73
+ 7.2 17.01 16.93 17.1
74
+ 7.3 17.06 16.97 16.97
75
+ 7.4 17.05 16.96 17.0
76
+ 7.5 16.87 16.91 17.05
77
+ 7.6 16.92 16.95 17.05
78
+ 7.7 17.0 16.97 16.93
79
+ 7.8 16.89 16.93 16.98
80
+ 7.9 16.91 16.95 17.01
81
+ 8.0 16.91 17.02 17.0
82
+ 8.1 16.92 16.95 17.01
83
+ 8.2 16.88 17.07 16.9
84
+ 8.3 16.94 17.13 16.92
85
+ 8.4 17.01 16.99 17.05
86
+ 8.5 16.91 17.0 17.01
87
+ 8.6 16.89 17.05 17.02
88
+ 8.7 16.88 16.95 16.92
89
+ 8.8 16.9 17.03 17.13
90
+ 8.9 17.12 16.94 16.98
91
+ 9.0 16.96 17.1 17.03
92
+ 9.1 17.01 16.99 16.99
93
+ 9.2 16.98 16.96 17.04
94
+ 9.3 16.95 16.94 17.12
95
+ 9.4 16.9 16.94 16.96
96
+ 9.5 16.9 16.94 16.94
97
+ 9.6 16.9 16.97 17.04
98
+ 9.7 16.96 17.0 17.02
99
+ 9.8 16.89 16.94 16.99
100
+ 9.9 16.9 16.97 17.0
101
+ 10.0 17.0 17.02 16.99
102
+ 10.1 16.93 16.9 17.11
103
+ 10.2 16.98 17.05 17.0
104
+ 10.3 16.94 17.01 16.98
105
+ 10.4 17.05 16.91 17.03
106
+ 10.5 17.0 16.98 16.99
107
+ 10.6 17.0 17.04 16.97
108
+ 10.7 17.09 16.95 16.96
109
+ 10.8 17.03 16.95 17.03
110
+ 10.9 17.02 17.01 17.06
111
+ 11.0 17.04 16.95 17.05
112
+ 11.1 16.95 16.98 17.0
113
+ 11.2 16.94 16.94 16.96
114
+ 11.3 16.93 16.99 16.88
115
+ 11.4 16.82 16.95 17.02
116
+ 11.5 16.94 16.92 16.9
117
+ 11.6 16.91 16.91 17.0
118
+ 11.7 17.0 17.01 16.98
119
+ 11.8 17.03 16.98 16.96
120
+ 11.9 17.06 17.03 16.98
121
+ 12.0 17.04 17.0 17.04
122
+ 12.1 17.05 16.99 16.92
123
+ 12.2 16.9 17.04 16.95
124
+ 12.3 17.03 16.9 16.89
125
+ 12.4 17.04 16.93 16.98
126
+ 12.5 16.98 16.92 16.93
127
+ 12.6 17.04 16.9 16.97
128
+ 12.7 16.94 16.98 17.0
129
+ 12.8 16.91 16.8 17.02
130
+ 12.9 17.05 16.9 16.97
131
+ 13.0 16.97 16.94 16.94
132
+ 13.1 17.0 16.92 17.01
133
+ 13.2 17.02 16.9 16.96
134
+ 13.3 16.95 16.89 16.87
135
+ 13.4 16.98 16.94 16.95
136
+ 13.5 16.92 17.0 17.0
137
+ 13.6 16.94 16.92 16.94
138
+ 13.7 16.97 16.92 16.93
139
+ 13.8 16.9 16.96 17.05
140
+ 13.9 16.95 16.91 16.88
141
+ 14.0 16.8 16.96 16.94
142
+ 14.1 16.87 17.0 16.86
143
+ 14.2 16.88 16.93 16.84
144
+ 14.3 17.04 16.86 16.96
145
+ 14.4 16.9 16.96 17.01
146
+ 14.5 16.88 16.89 16.95
147
+ 14.6 16.85 16.92 16.94
148
+ 14.7 16.93 16.95 17.05
149
+ 14.8 16.92 16.93 16.98
150
+ 14.9 16.95 16.84 16.94
151
+ 15.0 17.01 16.84 16.96
152
+ 15.1 16.95 16.88 17.0
153
+ 15.2 16.89 16.9 16.91
154
+ 15.3 16.88 16.95 16.91
155
+ 15.4 17.02 16.94 16.95
156
+ 15.5 16.96 16.86 17.02
157
+ 15.6 16.99 16.79 16.92
158
+ 15.7 16.92 16.78 16.88
159
+ 15.8 16.94 16.88 16.98
160
+ 15.9 16.9 16.9 17.04
161
+ 16.0 16.9 16.88 16.88
162
+ 16.1 16.96 16.82 16.96
163
+ 16.2 17.01 16.84 16.97
164
+ 16.3 16.98 16.93 16.97
165
+ 16.4 16.99 16.78 16.87
166
+ 16.5 16.89 16.74 16.91
167
+ 16.6 16.97 16.79 16.99
168
+ 16.7 17.0 16.9 17.05
169
+ 16.8 16.96 16.83 16.96
170
+ 16.9 16.86 16.86 16.98
171
+ 17.0 16.87 16.98 16.97
172
+ 17.1 16.87 16.89 16.97
173
+ 17.2 16.98 17.01 16.98
174
+ 17.3 16.96 16.97 17.01
175
+ 17.4 16.91 17.05 16.95
176
+ 17.5 16.89 16.97 16.93
177
+ 17.6 16.92 16.94 17.02
178
+ 17.7 16.81 16.9 16.99
179
+ 17.8 16.91 17.04 17.06
180
+ 17.9 17.01 17.0 16.99
181
+ 18.0 16.9 16.97 16.97
182
+ 18.1 16.82 16.94 16.87
183
+ 18.2 16.98 16.9 16.82
184
+ 18.3 16.95 16.97 17.01
185
+ 18.4 16.99 16.96 17.05
186
+ 18.5 17.01 16.94 16.96
187
+ 18.6 16.92 16.89 16.83
188
+ 18.7 16.93 16.87 16.87
189
+ 18.8 16.95 16.84 16.9
190
+ 18.9 16.9 16.84 17.01
191
+ 19.0 16.89 16.79 16.96
192
+ 19.1 16.91 16.82 16.94
193
+ 19.2 16.95 16.83 17.02
194
+ 19.3 16.89 16.76 16.91
195
+ 19.4 16.94 16.89 16.96
196
+ 19.5 16.94 16.89 16.72
197
+ 19.6 16.87 16.99 16.82
198
+ 19.7 16.8 16.82 16.85
199
+ 19.8 16.86 16.78 16.93
200
+ 19.9 16.99 16.94 16.84
201
+ 20.0 16.89 16.99 16.98
202
+ 20.1 16.98 17.0 16.97
203
+ 20.2 16.9 16.9 16.87
204
+ 20.3 16.9 16.9 16.86
205
+ 20.4 16.85 16.84 16.9
206
+ 20.5 16.81 16.98 16.92
207
+ 20.6 16.87 17.11 16.85
208
+ 20.7 16.92 16.86 16.86
209
+ 20.8 16.95 16.83 16.9
210
+ 20.9 16.91 16.83 16.88
211
+ 21.0 16.97 17.0 16.91
212
+ 21.1 16.79 16.98 16.81
213
+ 21.2 16.84 16.93 16.93
214
+ 21.3 16.89 16.99 16.9
215
+ 21.4 16.91 17.0 16.86
216
+ 21.5 16.81 17.05 16.83
217
+ 21.6 16.91 17.1 16.91
218
+ 21.7 16.81 17.05 16.87
219
+ 21.8 16.96 17.06 16.79
220
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221
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222
+ 22.1 16.9 17.05 16.97
223
+ 22.2 16.85 17.01 16.9
224
+ 22.3 16.88 16.99 16.83
225
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226
+ 22.5 16.98 17.15 16.95
227
+ 22.6 16.84 17.06 16.96
228
+ 22.7 16.91 17.02 17.01
229
+ 22.8 16.88 17.0 16.95
230
+ 22.9 16.94 16.96 16.88
231
+ 23.0 16.91 17.01 16.88
232
+ 23.1 16.94 16.91 16.83
233
+ 23.2 16.91 16.92 16.89
234
+ 23.3 16.96 16.95 16.89
235
+ 23.4 16.99 17.12 16.88
236
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237
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238
+ 23.7 16.91 16.87 17.01
239
+ 23.8 16.91 16.95 16.9
240
+ 23.9 16.92 17.01 16.89
241
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242
+ 24.1 16.85 16.97 16.98
243
+ 24.2 17.0 17.01 16.96
244
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245
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246
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247
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248
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249
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250
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251
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252
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253
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254
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255
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256
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257
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258
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259
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260
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261
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262
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263
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264
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265
+ 26.4 16.79 16.82 16.93
266
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267
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268
+ 26.7 16.88 16.96 17.01
269
+ 26.8 16.81 17.07 17.07
270
+ 26.9 16.86 17.04 17.11
271
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272
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273
+ 27.2 16.85 16.94 17.01
274
+ 27.3 16.82 16.94 17.12
275
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276
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277
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278
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279
+ 27.8 16.88 16.94 17.0
280
+ 27.9 16.74 16.92 16.94
281
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1000
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1001
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atlas_1000_analysis/1ix9_A/1ix9_A_pLDDT.tsv ADDED
@@ -0,0 +1,206 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ seq pLDDT
2
+ S 93.54
3
+ Y 98.6
4
+ T 98.58
5
+ L 98.74
6
+ P 98.48
7
+ S 98.63
8
+ L 98.48
9
+ P 98.33
10
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11
+ A 98.77
12
+ Y 98.85
13
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14
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15
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16
+ E 98.7
17
+ P 98.68
18
+ H 98.81
19
+ F 98.81
20
+ D 98.82
21
+ K 98.79
22
+ Q 98.82
23
+ T 98.83
24
+ M 98.85
25
+ E 98.87
26
+ I 98.83
27
+ H 98.87
28
+ H 98.89
29
+ T 98.8
30
+ K 98.74
31
+ H 98.75
32
+ H 98.86
33
+ Q 98.81
34
+ T 98.85
35
+ Y 98.86
36
+ V 98.86
37
+ N 98.81
38
+ N 98.82
39
+ A 98.78
40
+ N 98.77
41
+ A 98.71
42
+ A 98.47
43
+ L 98.56
44
+ E 98.08
45
+ S 97.4
46
+ L 97.77
47
+ P 95.74
48
+ E 95.23
49
+ F 97.76
50
+ A 96.41
51
+ N 94.7
52
+ L 98.2
53
+ P 98.45
54
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55
+ E 98.06
56
+ E 98.58
57
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58
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59
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60
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61
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62
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63
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64
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65
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66
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67
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68
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69
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70
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71
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72
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73
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74
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75
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76
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77
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78
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79
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80
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81
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82
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83
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84
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85
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86
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87
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88
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89
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90
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91
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92
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93
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94
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95
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96
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97
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98
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99
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100
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101
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102
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103
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104
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105
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106
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107
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108
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109
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110
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111
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112
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113
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114
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115
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116
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117
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118
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119
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120
+ A 98.86
121
+ A 98.82
122
+ A 98.62
123
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124
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125
+ F 97.68
126
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127
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128
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129
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130
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131
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132
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133
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134
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135
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136
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137
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138
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139
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140
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141
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142
+ V 98.91
143
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144
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145
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146
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147
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148
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149
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150
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151
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152
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153
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154
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155
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156
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157
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158
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159
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160
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161
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162
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163
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164
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165
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166
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167
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168
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169
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170
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171
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172
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173
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174
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175
+ F 98.64
176
+ L 98.59
177
+ K 98.64
178
+ F 98.7
179
+ Q 98.55
180
+ N 97.38
181
+ R 98.66
182
+ R 98.7
183
+ P 98.72
184
+ D 98.83
185
+ Y 98.9
186
+ I 98.89
187
+ K 98.85
188
+ E 98.88
189
+ F 98.92
190
+ W 98.86
191
+ N 98.84
192
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193
+ V 98.87
194
+ N 98.89
195
+ W 98.89
196
+ D 98.86
197
+ E 98.89
198
+ A 98.87
199
+ A 98.87
200
+ A 98.85
201
+ R 98.78
202
+ F 98.81
203
+ A 98.5
204
+ A 98.31
205
+ K 97.22
206
+ K 84.1
atlas_1000_analysis/1ix9_A/README.txt ADDED
@@ -0,0 +1,40 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ These trajectories and corresponding analysis were downloaded from the ATLAS database (https://www.dsimb.inserm.fr/ATLAS).
2
+
3
+ ATLAS gathers standardized molecular dynamics simulations of protein structures accompanied by their analysis in the form of interactive diagrams and trajectory visualization. All the raw trajectories as well as the results of analysis are available for download.
4
+
5
+
6
+ • ARCHIVE CONTENT •
7
+ Protein structure and trajectory files:
8
+ - PDB_Name.pdb: Protein structure in PDB format used to launch the molecular dynamics (after energy minimisation and equilibrations).
9
+ - PDB_Name_corresp.tsv: Correspondence between the author residue number (PDB file / CIF file) and the new numbering (starting from 1).
10
+ - PDB_Name_R{1,2,3}.tpr: File containing the starting structure of the simulation, the molecular topology and all the simulation parameters.
11
+ - PDB_Name_R{1,2,3}.xtc: MD trajectory without solvent molecules. Each trajectory is of 100 ns with frames saved every 100 ps (1,000 frames in total).
12
+
13
+ Results of MD simulation analysis:
14
+ - PDB_Name_Bfactor.tsv: Experimental B-factor values of the initial PDB structure (in Ų).
15
+ - PDB_Name_RMSF.tsv: RMSF values for the 3 MD replicates (in Å).
16
+ - PDB_Name_Neq.tsv: Local deformability index Neq for the 3 MD replicates.
17
+ - PDB_Name_RMSD.tsv: RMSD values for the 3 MD replicates (in Å / ns).
18
+ - PDB_Name_gyr.tsv: Gyration radius values for the 3 MD replicates (in Å / ns).
19
+ - PDB_Name_contacts.tsv: Residue-level interactions co-crystallized with the protein of interest (chain, ligands, ions and nucleotides within 6 Å threshold of the α-carbon of the residue).
20
+ - PDB_Name_pLDDT.tsv: AlphaFold2 pLDDT. pLDDT is the per-residue prediction confidence metric, not a flexibility measurement.
21
+
22
+ See the ATLAS about page (https://www.dsimb.inserm.fr/ATLAS/about.html) for details.
23
+
24
+ • MOLECULAR DYNAMICS PARAMETERS •
25
+ Download the ATLAS GROMACS molecular dynamics parameters (.mdp) and force-field files (CHARMM36m) with https://www.dsimb.inserm.fr/ATLAS/data/download/ATLAS_parameters.zip or using the REST API with `curl -X 'GET' 'https://www.dsimb.inserm.fr/ATLAS/api/MD_parameters' -o MD_parameters.zip`
26
+
27
+
28
+ • LICENSE •
29
+ The ATLAS database is released under a Creative Commons Attribution-NonCommercial 4.0 International license (CC-BY-NC). This license is one of the Creative Commons licenses and allows users to share and adapt the dataset if they give credit to the copyright holder and do not use the dataset for any commercial purposes. See https://creativecommons.org/licenses/by-nc/4.0/ for details.
30
+ Please contact us for commercial use.
31
+
32
+
33
+ • CONTACTS •
34
+ For scientific collaboration, please contact:
35
+ Tatiana GALOCHKINA, Associate Professor, Université Paris Cité
36
+ tatiana.galochkina (at) u-paris.fr
37
+ or
38
+ Jean-Christophe GELLY, Professor, Université Paris Cité
39
+ jean-christophe.gelly (at) u-paris.fr
40
+
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