# =================================================================== # Diffusion Model Configuration for Multi-System Pooled Embeddings # =================================================================== # --- Execution Target --- # Specify which system's embeddings to train the diffusion model on. # This corresponds to the group name in the HDF5 file (e.g., 0 for 'system_0'). system_to_train: 0 # --- Data Paths --- # Path to the HDF5 file containing the pooled embeddings from the multi-system ChebNet script. h5_file_path: "latent_reps/pooled_embeddings.h5" # Template for the group name within the HDF5 file. The script will replace '{}' with 'system_to_train'. dataset_group_key_template: "system_{}" # Name of the dataset within each group. dataset_name_in_group: "embeddings" # Directory to save generated embeddings and checkpoints. output_dir: "diffusion_output" # --- Run Mode & Grid Search --- # 'user_defined': Runs a single experiment with the parameters in the 'parameters' section. # 'grid_search': Runs a series of experiments defined in 'grid_search_space'. run_mode: "grid_search" # --- Parameters for a single run (if run_mode is 'user_defined') --- parameters: num_epochs: 50 batch_size: 64 learning_rate: 1e-5 num_gen: 5000 save_interval: 1000 model_type: "mlp_v2" hidden_dim: 1024 scheduler: "linear" diffusion_steps: 1400 beta_start: 5e-6 beta_end: 0.03 num_instances: 6 # For partitioning grid search experiments # --- Hyperparameter space for grid search (if run_mode is 'grid_search') --- grid_search_space: # These parameters will be fixed across all grid search experiments # To vary them, you would need to add them to the 'curated_experiments' in the script. learning_rate: 1e-5 num_epochs: 50 model_type: "mlp_v2" hidden_dim: 1024 # The script will generate a curated grid based on these values. # This section is for reference; the actual grid is built in the python script. example_beta_starts: [5e-6, 0.005] example_beta_ends: [0.03, 0.1] example_diffusion_steps: [500, 1400]