Update README.md

README.md

@@ -16,4 +16,43 @@ configs:
   data_files:
   - split: train
     path: data/train-*
+license: cc-by-sa-4.0
 ---
+
+# OG_prot90: An Open Genomic Protein Dataset
+The `OG_prot90` dataset is a protein-only dataset, created by clustering the Open Genomic dataset ([`OG`](https://huggingface.co/datasets/tattabio/OG)) at 90% sequence identity.  
+
+MMseqs2 linclust (Steinegger and Söding 2018) was used to cluster all 400M protein sequences from the OG dataset, resulting in 85M protein sequences.
+Sequences were clustered at 90% sequence id and 90% sequence coverage.
+
+
+## Use
+
+```python
+import datasets
+ds = datasets.load_dataset('tattabio/OG_prot90')
+```
+
+To preview the dataset without downloading, load in streaming mode:
+```python
+import datasets
+ds = datasets.load_dataset('tattabio/OG_prot90', streaming=True)['train']
+print(next(iter(ds)))
+```
+
+
+
+## Citation
+
+**BibTeX:**
+
+```
+@article{Cornman2024,
+  title = {The OMG dataset: An Open MetaGenomic corpus for mixed-modality genomic language modeling},
+  url = {https://www.biorxiv.org/content/early/2024/08/17/2024.08.14.607850},
+  DOI = {10.1101/2024.08.14.607850},
+  publisher = {Cold Spring Harbor Laboratory},
+  author = {Cornman, Andre and West-Roberts, Jacob and Camargo, Antonio Pedro and Roux, Simon and Beracochea, Martin and Mirdita, Milot and Ovchinnikov, Sergey and Hwang, Yunha},
+  year = {2024},
+}
+```