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`Permission denied` when sharing cache between users
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### Describe the bug
We want to use `datasets` and `transformers` on a shared machine. Right now, each user has a separate HF_HOME in their home directory. To reduce duplicates of the datasets, we want to share that cache. While experimenting, we are running into `Permission denied` errors.
It looks like this was supported in the past (see #6589)?
Is there a correct way to share caches across users?
### Steps to reproduce the bug
1. Create a directory `/models/hf_hub_shared_experiment` with read/write permissions for two different users
2. For each user run the script below
```python
import os
os.environ["HF_HOME"] = "/models/hf_hub_shared_experiment"
os.environ["HF_DATASETS_CACHE"] = "/models/hf_hub_shared_experiment/data"
import datasets
import transformers
DATASET = "tatsu-lab/alpaca"
MODEL = "meta-llama/Llama-3.2-1B-Instruct"
model = transformers.AutoModelForCausalLM.from_pretrained(MODEL)
tokenizer = transformers.AutoTokenizer.from_pretrained(MODEL)
dataset = datasets.load_dataset(DATASET)
```
The first user is able to download and use the model and dataset. The second user gets these errors:
```
$ python ./experiment_with_shared.py
Could not cache non-existence of file. Will ignore error and continue. Error: [Errno 13] Permission denied: '/models/hf_hub_shared_experiment/hub/models--meta-llama--Llama-3.2-1B-Instruct/.no_exist/9213176726f574b556790deb65791e0c5aa438b6/custom_generate/generate.py'
Could not cache non-existence of file. Will ignore error and continue. Error: [Errno 13] Permission denied: '/models/hf_hub_shared_experiment/hub/datasets--tatsu-lab--alpaca/.no_exist/dce01c9b08f87459cf36a430d809084718273017/alpaca.py'
Could not cache non-existence of file. Will ignore error and continue. Error: [Errno 13] Permission denied: '/models/hf_hub_shared_experiment/hub/datasets--tatsu-lab--alpaca/.no_exist/dce01c9b08f87459cf36a430d809084718273017/.huggingface.yaml'
Could not cache non-existence of file. Will ignore error and continue. Error: [Errno 13] Permission denied: '/models/hf_hub_shared_experiment/hub/datasets--tatsu-lab--alpaca/.no_exist/dce01c9b08f87459cf36a430d809084718273017/dataset_infos.json'
Traceback (most recent call last):
File "/home/user2/.venv/experiment_with_shared.py", line 17, in <module>
dataset = datasets.load_dataset(DATASET)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/user2/.venv/lib/python3.12/site-packages/datasets/load.py", line 1397, in load_dataset
builder_instance = load_dataset_builder(
^^^^^^^^^^^^^^^^^^^^^
File "/home/user2/.venv/lib/python3.12/site-packages/datasets/load.py", line 1171, in load_dataset_builder
builder_instance: DatasetBuilder = builder_cls(
^^^^^^^^^^^^
File "/home/user2/.venv/lib/python3.12/site-packages/datasets/builder.py", line 390, in __init__
with FileLock(lock_path):
File "/home/user2/.venv/lib/python3.12/site-packages/filelock/_api.py", line 377, in __enter__
self.acquire()
File "/home/user2/.venv/lib/python3.12/site-packages/filelock/_api.py", line 333, in acquire
self._acquire()
File "/home/user2/.venv/lib/python3.12/site-packages/filelock/_unix.py", line 45, in _acquire
fd = os.open(self.lock_file, open_flags, self._context.mode)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
PermissionError: [Errno 13] Permission denied: '/models/hf_hub_shared_experiment/data/_models_hf_hub_shared_experiment_data_tatsu-lab___alpaca_default_0.0.0_dce01c9b08f87459cf36a430d809084718273017.lock'
```
### Expected behavior
The second user should be able to read the shared cache files.
### Environment info
$ datasets-cli env
- `datasets` version: 4.4.1
- Platform: Linux-6.8.0-88-generic-x86_64-with-glibc2.39
- Python version: 3.12.3
- `huggingface_hub` version: 0.36.0
- PyArrow version: 22.0.0
- Pandas version: 2.3.3
- `fsspec` version: 2025.10.0
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Add inspect_ai eval logs support
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7899). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"Very cool! \r\n\r\nAny reason not to directly use inspect for loading/converting from the binary format to JSON? https://inspect.aisi.org.uk/reference/inspect_ai.log.html#convert_eval_logs ",
"The format is simple enough to not have to rely on an additional dependency :)"
] | 2025-12-08T16:14:40Z
| 2025-12-09T14:45:15Z
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Support for .eval log files from inspect_ai
They are actually ZIP files according to the source code at https://github.com/UKGovernmentBEIS/inspect_ai/blob/main/src/inspect_ai/log/_log.py
Unfortunately their format can't be converted to Parquet, so I had to JSON-encode all the nested values
```python
ds = load_dataset("dvilasuero/kimi-bfcl")
```
this will enable the Viewer for datasets like https://huggingface.co/datasets/dvilasuero/kimi-bfcl
original tweet for context: https://x.com/dvilasuero/status/1996936988176343220?s=20
cc @dvsrepo @julien-c @davanstrien
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docs: making PyPi to PyPI ensuring no spelling errors
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This PR adds a short clarification in the README section wherein PyPI the python package was mistakenly typed as PyPi which i have fixed
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Save input shard lengths
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will be useful for the Viewer, to know what (original) shard each row belongs to
cc @cfahlgren1
next step is use it in Dataset Viewer and expose an API that returns the file containing the row at rowId
(took the opportunity to remove unusued code)
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fix: force contiguous copy for sliced list arrays in embed_array_storage
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] | 2025-12-03T04:34:26Z
| 2025-12-09T15:37:49Z
| null |
NONE
| null | null | null | null |
## Summary
Fixes SIGKILL crash in `embed_array_storage` when processing sliced/sharded datasets with nested types like `Sequence(Nifti())` or `Sequence(Image())`.
**Root cause**: When `ds.shard()` or `ds.select()` creates a sliced view, `array.values` on a sliced `ListArray` returns values with internal offset references. For nested types, PyArrow's C++ layer can crash (SIGKILL, exit code 137) when materializing these sliced nested structs.
**Fix**: Force a contiguous copy via `pa.concat_arrays([array])` when the array has a non-zero offset before processing list/large_list arrays.
## Changes
- Add offset check in `embed_array_storage` for list/large_list arrays
- Force contiguous copy when `array.offset > 0` to break internal references
- Add regression tests for sliced arrays with Image, Nifti, and LargeList types
## Test plan
- [x] Added `tests/features/test_embed_storage_sliced.py` with 3 tests:
- `test_embed_array_storage_sliced_list_image`
- `test_embed_array_storage_sliced_list_nifti`
- `test_embed_array_storage_sliced_large_list`
- [x] All tests verify `embedded.offset == 0` (contiguous result)
- [x] All tests pass locally
- [x] ruff check passes
## Context
This was discovered while uploading a 270GB neuroimaging dataset (ARC) with `Sequence(Nifti())` columns. The process crashed with SIGKILL (no Python traceback) when `embed_table_storage` was called on sharded data.
Workaround that confirmed the fix: pandas round-trip (`shard.to_pandas()` → `Dataset.from_pandas()`) which forces a contiguous copy.
Fixes #7894
Related: #6686, #7852, #6790
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fix: use temp files in push_to_hub to prevent OOM on large datasets
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"Closing this PR.\n\nAfter further investigation (prompted by @lhoestq's feedback on #7893), I discovered that `free_memory=True` does work correctly - memory doesn't actually accumulate in the `additions` list as I originally thought.\n\nI tested standard `push_to_hub()` with 902 shards and it processed 625 shards (69%) without OOM issues. The crash we were experiencing was actually **#7894** (`embed_table_storage` crash on `Sequence()` types), not memory accumulation.\n\nI've closed #7893 as invalid. This PR is no longer needed.\n\nApologies for the noise - lesson learned about testing before filing."
] | 2025-12-03T04:33:55Z
| 2025-12-06T13:58:44Z
| 2025-12-05T22:47:50Z
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## Summary
Fixes memory accumulation in `_push_parquet_shards_to_hub_single` that causes OOM when uploading large datasets with many shards.
**Root cause**: The current implementation stores ALL parquet shard bytes in memory via `BytesIO`, accumulating in the `additions` list. For N shards of ~300MB each, this requires N × 300MB RAM.
**Fix**: Write parquet to temp file instead of `BytesIO`, pass file path to `CommitOperationAdd`. Delete temp file after `preupload_lfs_files` completes (for LFS uploads only - regular uploads need the file until `create_commit`).
## Changes
- Replace `BytesIO` with `tempfile.NamedTemporaryFile` in `_push_parquet_shards_to_hub_single`
- Use file path in `CommitOperationAdd.path_or_fileobj` instead of bytes
- Delete temp file after upload (only for LFS mode - regular uploads keep file for `create_commit`)
- Add `try...finally` for safe cleanup even on errors
- Remove unused `BytesIO` import
## Test plan
- [x] Added `tests/test_push_to_hub_memory.py` with 4 tests:
- `test_push_to_hub_uses_file_path_not_bytes_in_commit_operation`
- `test_push_to_hub_cleans_up_temp_files_for_lfs_uploads`
- `test_push_to_hub_keeps_temp_files_for_regular_uploads`
- `test_push_to_hub_uploaded_size_still_calculated`
- [x] All tests pass locally
- [x] ruff check passes
## Context
This was discovered while uploading a 270GB neuroimaging dataset (ARC) with 902 shards. The process was killed by OOM after accumulating ~270GB in the `additions` list.
Fixes #7893
Related: #5990, #7400
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embed_table_storage crashes (SIGKILL) on sharded datasets with Sequence() nested types
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"I wasn't able to reproduce the crash on my side (macos arm 54, pyarrow 22 and a nifti file I found [online](https://s3.amazonaws.com/openneuro.org/ds004884/sub-M2001/ses-1076/anat/sub-M2001_ses-1076_acq-tfl3_run-4_T1w.nii.gz?versionId=9aVGb3C.VcoBgxrhNzFnL6O0MvxQsXX7&AWSAccessKeyId=AKIARTA7OOV5WQ3DGSOB&Signature=LQMLzjsuzSV7MtNAdQaFdqWqmbM%3D&Expires=1765473937))\n\ncould the issue be specific to your env ? have you tried on other environments like colab maybe ?",
"Hi @lhoestq,\n\nThank you so much for taking the time to investigate this. Your comment about not being able to reproduce it with a single NIfTI file actually helped me understand the bug better.\n\n**Key finding:** This bug is scale-dependent. It only manifests with real, full-scale data, and not with synthetic test files.\n\nI created a sandbox branch that isolates the exact state before the workaround:\n\n**🔗 Reproduction branch:** https://github.com/The-Obstacle-Is-The-Way/arc-aphasia-bids/tree/sandbox/reproduce-bug-7894\n\n### What we confirmed\n\n| Test | Result |\n|------|--------|\n| Synthetic 2x2x2 NIfTI files | ✅ No crash |\n| Synthetic 64³ NIfTI files (1MB each) | ✅ No crash |\n| Real ARC dataset (273GB, 902 sessions) | ❌ **SIGKILL at 0%** |\n\n### Environment (same as yours)\n\n- macOS ARM64\n- PyArrow 22.0.0\n- datasets 4.4.2.dev0 (git main)\n\n### Crash output\n\n```\nCasting the dataset: 100%|██████████| 902/902\nUploading Shards: 0%| | 0/902\nUserWarning: resource_tracker: There appear to be 1 leaked semaphore objects\n```\n**Exit code: 137 (SIGKILL)**\n\nThe crash happens on the very first shard, at `embed_table_storage()`, when processing `Sequence(Nifti())` columns after `ds.shard()`.\n\n### The workaround (in main branch)\n\nA pandas round-trip before embedding breaks the problematic Arrow references:\n\n```python\nshard_df = shard.to_pandas()\nfresh_shard = Dataset.from_pandas(shard_df, preserve_index=False)\nfresh_shard = fresh_shard.cast(ds.features)\n# Now embed_table_storage works\n```\n\nWe understand that downloading 273GB to reproduce this isn't practical. The reproduction guide in the branch has full details if you'd like to dig deeper. Happy to help debug further if useful.\n\nThank you again for your time and for maintaining this library. ",
"@lhoestq Brief update - I've added a reproduction that uses standard `ds.push_to_hub()` (no custom code).\n\n**Reproduction branch:** https://github.com/The-Obstacle-Is-The-Way/arc-aphasia-bids/tree/sandbox/reproduce-bug-7894\n\n**To reproduce with standard library:**\n```bash\ngit clone -b sandbox/reproduce-bug-7894 https://github.com/The-Obstacle-Is-The-Way/arc-aphasia-bids.git\ncd arc-aphasia-bids && uv sync --all-extras\n# Download dataset (~273GB): aws s3 sync --no-sign-request s3://openneuro.org/ds004884 data/openneuro/ds004884\nHF_REPO=\"your-username/test\" uv run python test_prove_7894_standard.py\n```\n\nCrashes at 0% with the same semaphore warning.\n\nFull details in [REPRODUCE_BUG_7894.md](https://github.com/The-Obstacle-Is-The-Way/arc-aphasia-bids/blob/sandbox/reproduce-bug-7894/REPRODUCE_BUG_7894.md).\n\nAlso - you were right about #7893. I closed it. `free_memory=True` works as you said. That issue was my mistake."
] | 2025-12-03T04:20:06Z
| 2025-12-06T13:10:34Z
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## Summary
`embed_table_storage` crashes with SIGKILL (exit code 137) when processing sharded datasets containing `Sequence()` nested types like `Sequence(Nifti())`. Likely affects `Sequence(Image())` and `Sequence(Audio())` as well.
The crash occurs at the C++ level with no Python traceback.
### Related Issues
- #7852 - Problems with NifTI (closed, but related embedding issues)
- #6790 - PyArrow 'Memory mapping file failed' (potentially related)
- #7893 - OOM issue (separate bug, but discovered together)
### Context
Discovered while uploading the [Aphasia Recovery Cohort (ARC)](https://openneuro.org/datasets/ds004884) neuroimaging dataset to HuggingFace Hub. Even after fixing the OOM issue (#7893), this crash blocked uploads.
Working implementation with workaround: [arc-aphasia-bids](https://github.com/The-Obstacle-Is-The-Way/arc-aphasia-bids)
## Reproduction
```python
from datasets import Dataset, Features, Sequence, Value
from datasets.features import Nifti
from datasets.table import embed_table_storage
features = Features({
"id": Value("string"),
"images": Sequence(Nifti()),
})
ds = Dataset.from_dict({
"id": ["a", "b"],
"images": [["/path/to/file.nii.gz"], []],
}).cast(features)
# This works fine:
table = ds._data.table.combine_chunks()
embedded = embed_table_storage(table) # OK
# This crashes with SIGKILL:
shard = ds.shard(num_shards=2, index=0)
shard_table = shard._data.table.combine_chunks()
embedded = embed_table_storage(shard_table) # CRASH - no Python traceback
```
## Key Observations
| Scenario | Result |
|----------|--------|
| Single `Nifti()` column | Works |
| `Sequence(Nifti())` on full dataset | Works |
| `Sequence(Nifti())` after `ds.shard()` | **CRASHES** |
| `Sequence(Nifti())` after `ds.select([i])` | **CRASHES** |
| Crash with empty Sequence `[]` | **YES** - not file-size related |
## Workaround
Convert shard to pandas and recreate the Dataset to break internal Arrow references:
```python
shard = ds.shard(num_shards=num_shards, index=i, contiguous=True)
# CRITICAL: Pandas round-trip breaks problematic references
shard_df = shard.to_pandas()
fresh_shard = Dataset.from_pandas(shard_df, preserve_index=False)
fresh_shard = fresh_shard.cast(ds.features)
# Now embedding works
table = fresh_shard._data.table.combine_chunks()
embedded = embed_table_storage(table) # OK!
```
## Disproven Hypotheses
| Hypothesis | Test | Result |
|------------|------|--------|
| PyArrow 2GB binary limit | Monkey-patched `Nifti.pa_type` to `pa.large_binary()` | Still crashed |
| Memory fragmentation | Called `table.combine_chunks()` | Still crashed |
| File size issue | Tested with tiny NIfTI files | Still crashed |
## Root Cause Hypothesis
When `ds.shard()` or `ds.select()` creates a subset, the resulting Arrow table retains internal references/views to the parent table. When `embed_table_storage` processes nested struct types like `Sequence(Nifti())`, these references cause a crash in the C++ layer.
The pandas round-trip forces a full data copy, breaking these problematic references.
## Environment
- datasets version: main branch (post-0.22.0)
- Platform: macOS 14.x ARM64 (may be platform-specific)
- Python: 3.13
- PyArrow: 18.1.0
## Notes
This may ultimately be a PyArrow issue surfacing through datasets. Happy to help debug further if maintainers can point to where to look in the embedding logic.
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push_to_hub OOM: _push_parquet_shards_to_hub accumulates all shard bytes in memory
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"`preupload_lfs_files` removes the parquet bytes in `shard_addition` since the default is `free_memory=True`: it doesn't accumulate in memory. Can you check this is indeed the case, i.e. that `shard_addition.path_or_fileobj` is indeed empty ?",
"@lhoestq Thank you for pushing back on this and helping me understand the code better.\n\nYou're correct, `free_memory=True` does prevent memory accumulation. I went back and tested this properly: I ran standard `push_to_hub()` with 902 shards and it processed **625 shards (69%)** without any OOM issues before I stopped it. Memory stayed reasonable throughout.\n\nI filed this issue based on reading the code and seeing `additions.append(shard_addition)`, without fully understanding that `preupload_lfs_files()` clears the bytes first. That was my mistake.\n\nThe crash we were actually experiencing was **#7894** (`embed_table_storage` crash on `Sequence(Nifti())`), which we've now isolated and reproduced separately.\n\nClosing this issue. Thanks again for the clarification; learned something important about the codebase today."
] | 2025-12-03T04:19:34Z
| 2025-12-05T22:45:59Z
| 2025-12-05T22:44:16Z
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## Summary
Large dataset uploads crash or hang due to memory exhaustion. This appears to be the root cause of several long-standing issues.
### Related Issues
This is the root cause of:
- #5990 - Pushing a large dataset on the hub consistently hangs (46 comments, open since 2023)
- #7400 - 504 Gateway Timeout when uploading large dataset
- #6686 - Question: Is there any way for uploading a large image dataset?
### Context
Discovered while uploading the [Aphasia Recovery Cohort (ARC)](https://openneuro.org/datasets/ds004884) neuroimaging dataset (~270GB, 902 sessions) to HuggingFace Hub using the `Nifti()` feature.
Working implementation with workaround: [arc-aphasia-bids](https://github.com/The-Obstacle-Is-The-Way/arc-aphasia-bids)
## Root Cause
In `_push_parquet_shards_to_hub` (arrow_dataset.py), the `additions` list accumulates every `CommitOperationAdd` with full Parquet bytes in memory:
```python
additions = []
for shard in shards:
parquet_content = shard.to_parquet_bytes() # ~300 MB per shard
shard_addition = CommitOperationAdd(path_or_fileobj=parquet_content)
api.preupload_lfs_files(additions=[shard_addition])
additions.append(shard_addition) # THE BUG: bytes stay in memory forever
```
For a 902-shard dataset: **902 × 300 MB = ~270 GB RAM requested → OOM/hang**.
The bytes are held until the final `create_commit()` call, preventing garbage collection.
## Reproduction
```python
from datasets import load_dataset
# Any large dataset with embedded files (Image, Audio, Nifti, etc.)
ds = load_dataset("imagefolder", data_dir="path/to/large/dataset")
ds.push_to_hub("repo-id", num_shards=500) # Watch memory grow until crash
```
## Workaround
Process one shard at a time, upload via `HfApi.upload_file(path=...)`, delete before next iteration:
```python
from huggingface_hub import HfApi
import pyarrow.parquet as pq
api = HfApi()
for i in range(num_shards):
shard = ds.shard(num_shards=num_shards, index=i, contiguous=True)
# Write to disk, not memory
shard.to_parquet(local_path)
# Upload from file path (streams from disk)
api.upload_file(
path_or_fileobj=str(local_path),
path_in_repo=f"data/train-{i:05d}-of-{num_shards:05d}.parquet",
repo_id=repo_id,
repo_type="dataset",
)
# Clean up before next iteration
local_path.unlink()
del shard
```
Memory usage stays constant (~1-2 GB) instead of growing linearly.
## Suggested Fix
After `preupload_lfs_files` succeeds for each shard, release the bytes:
1. Clear `path_or_fileobj` from the `CommitOperationAdd` after preupload
2. Or write to temp file and pass file path instead of bytes
3. Or commit incrementally instead of batching all additions
## Environment
- datasets version: main branch (post-0.22.0)
- Platform: macOS 14.x ARM64
- Python: 3.13
- PyArrow: 18.1.0
- Dataset: 902 shards, ~270 GB total embedded NIfTI files
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encode nifti correctly when uploading lazily
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[] | 2025-12-01T16:35:07Z
| 2025-12-01T16:36:15Z
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CONTRIBUTOR
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When trying to upload nifti datasets lazily I got the error:
```python
from pathlib import Path
from datasets import load_dataset
nifti_dir = Path("<local_path>")
dataset = load_dataset(
"niftifolder",
data_dir=str(nifti_dir.absolute()),
streaming=True,
)
dataset.push_to_hub(repo_id="TobiasPitters/test-nifti-papaya-testdata")
```
```python
pyarrow.lib.ArrowInvalid: Could not convert <datasets.features.nifti.Nifti1ImageWrapper object at 0x77633407af90> with type Nifti1ImageWrapper: did not recognize Python value type when inferring an Arrow data type
```
This PR fixes that by encoding the Nifti1ImageWrappers correctly to bytes.
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fix(fingerprint): treat TMPDIR as strict API and fail (Issue #7877)
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7891). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-12-01T15:37:57Z
| 2025-12-08T12:14:12Z
| null |
NONE
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Fixes #7877 and follows up on feedback from [`#7890`](https://github.com/huggingface/datasets/pull/7890).
## Context
In [`#7890`](https://github.com/huggingface/datasets/pull/7890) it was introduced an automatic creation of the `TMPDIR` directory in `_TempCacheDir` so that `datasets` does not silently fall back to `/tmp` when `TMPDIR` points to a non‑existent path. This addressed the original “`tempfile` silently ignores TMPDIR” issue in [`#7877`](https://github.com/huggingface/datasets/issues/7877).
During review, it was pointed out by @stas00 (see [review comment](https://github.com/huggingface/datasets/pull/7890#discussion_r...)) that if the code treats `TMPDIR` as part of the public API, then failures to use it should **fail loudly**, not just emit warnings, because warnings are easy to miss in complex multi‑GPU setups.
This PR implements that stricter behaviour.
## What this PR changes
### `_TempCacheDir` behaviour In `src/datasets/fingerprint.py`:
- Continue to:
- Detect `TMPDIR` from the environment
- Normalise the path
- Auto‑create the directory when it does not exist
- Pass the (validated) directory explicitly to `tempfile.mkdtemp(...)` so `TMPDIR` is honoured even if `tempfile.gettempdir()` was already cached
- **New behaviour** (in response to review on [`#7890`](https://github.com/huggingface/datasets/pull/7890)):
- If `TMPDIR` is set, but the directory cannot be created, we now **re‑raise an `OSError`** with a clear, actionable message:
- “TMPDIR is set to '…' but the directory does not exist and could not be created: … Please create it manually or unset TMPDIR to fall back to the default temporary directory.”
- If `TMPDIR` is set but points to something that is **not a directory**, we also **raise `OSError`** with guidance:
- “TMPDIR is set to '…' but it is not a directory. Please point TMPDIR to a writable directory or unset it to fall back to the default temporary directory.”
- When `TMPDIR` is **not** set, behaviour is unchanged: we pass `dir=None` and let `tempfile` use the system default temp directory.
This aligns with the @stas00’s suggestion that TMPDIR should be treated as a strict API contract: if the user chooses a TMPDIR, we either use it or clearly fail, rather than silently falling back.
### Tests
In `tests/test_fingerprint.py`:
- Updated tests that previously expected warning‑and‑fallback to now expect **hard failures**:
- `test_temp_cache_dir_tmpdir_creation_failure`
- Uses `unittest.mock.patch` to force `os.makedirs` to raise `OSError("Permission denied")`
- Asserts that constructing `_TempCacheDir()` raises `OSError` and that the message contains both “TMPDIR is set to” and “could not be created”
- `test_temp_cache_dir_tmpdir_not_directory`
- Points `TMPDIR` to a regular file and asserts that `_TempCacheDir()` raises `OSError` with a message mentioning “is not a directory”
- Left the positive‑path tests in place:
- `test_temp_cache_dir_with_tmpdir_nonexistent` – verifies that a non‑existent `TMPDIR` is created and used
- `test_temp_cache_dir_with_tmpdir_existing` – verifies that an existing `TMPDIR` directory is used as the base for the temp cache dir
- `test_temp_cache_dir_without_tmpdir` – verifies behaviour when `TMPDIR` is not set (default temp directory)
- Kept the earlier fix to `test_fingerprint_in_multiprocessing`, which now uses `Pool.map` and asserts that fingerprints are stable across processes.
## Rationale
- Treating `TMPDIR` as part of the API for cache placement means:
- Users can rely on it to move large temporary Arrow files away from small `/tmp` partitions.
- Misconfigured TMPDIR should be **immediately visible** as a hard error, not as a warning lost among many logs.
- The stricter failure mode matches the concern on [`#7890`](https://github.com/huggingface/datasets/pull/7890) that “warnings are very easy to miss in complex applications where there are already dozens of warnings multiplied by multiple GPU processes”.
## Testing
- `pytest tests/test_fingerprint.py`
- `make style`
- No new linter issues introduced.
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Fix: Auto-create TMPDIR directory when it doesn't exist (Issue #7877)
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[
"> Thank you for implementing this, @ada-ggf25\r\n> \r\n> I see there are a few more uses of `tempfile` in `datasets` besides the one treated here - should they be treated in the same way as well?\r\n\r\nI had a look through the other tempfile call sites:\r\n- In `arrow_dataset.py` the code always pass an explicit `dir=cache_dir` when using `NamedTemporaryFile`, so TMPDIR is not involved there.\r\n- In `search.py` the `NamedTemporaryFile` is only used to generate a random Elasticsearch index name, it doesn’t control where big cache files are written, so it doesn’t have the same “No space left on device” impact.\r\n\r\nGiven that, the fingerprint temp directory is the only place where respecting TMPDIR is part of the user‑visible API for disk usage. If you’d like, I’m happy to also thread TMPDIR through the `search.py` name generation, but I think this PR should keep scoped to the place that actually writes large temporary files.\r\n",
"Thank you for checking the other instances of tempfile use, @ada-ggf25 "
] | 2025-11-29T20:35:24Z
| 2025-12-02T12:24:17Z
| 2025-12-02T12:24:17Z
|
NONE
| null | null | null | null |
# Fix: Auto-create TMPDIR directory when it doesn't exist
Fixes #7877
## Description
This PR fixes issue #7877 by implementing automatic creation of the `TMPDIR` directory when it is set but doesn't exist. Previously, `tempfile.mkdtemp()` would silently ignore `TMPDIR` and fall back to `/tmp` if the specified directory didn't exist, causing confusion for users experiencing "No space left on device" errors.
## Problem
When users set `TMPDIR` to a non-existent directory (e.g., `export TMPDIR=/some/big/storage`), Python's `tempfile` module silently ignores it and falls back to the default temporary directory (`/tmp`). This leads to:
- Users unable to use their specified temporary directory
- Silent failures that are difficult to debug
- Continued "No space left on device" errors even after setting `TMPDIR`
## Solution
The fix automatically creates the `TMPDIR` directory if it is set but doesn't exist, ensuring that:
1. Users' `TMPDIR` settings are respected
2. Clear logging is provided when the directory is created
3. Graceful fallback with warnings if directory creation fails
4. The fix works even if `tempfile.gettempdir()` was already called and cached
## Changes
### Implementation (`src/datasets/fingerprint.py`)
- Modified `_TempCacheDir.__init__()` to check if `TMPDIR` environment variable is set
- Added logic to auto-create the directory if it doesn't exist using `os.makedirs()`
- Added informative logging when directory is created
- Added warning logging when directory creation fails, with graceful fallback
- Added path normalisation to handle path resolution issues
- Explicitly pass `dir` parameter to `tempfile.mkdtemp()` to ensure TMPDIR is respected
### Tests (`tests/test_fingerprint.py`)
Added comprehensive test coverage:
- `test_temp_cache_dir_with_tmpdir_nonexistent`: Tests auto-creation of non-existent TMPDIR
- `test_temp_cache_dir_with_tmpdir_existing`: Tests behaviour when TMPDIR already exists
- `test_temp_cache_dir_without_tmpdir`: Tests default behaviour when TMPDIR is not set
- `test_temp_cache_dir_tmpdir_creation_failure`: Tests error handling when directory creation fails
Also fixed incomplete `test_fingerprint_in_multiprocessing` test that was missing implementation.
## Testing
- All existing tests pass
- New tests added for TMPDIR handling scenarios
- Code formatted with `make style`
- No linter errors
- Manual testing confirms the fix works as expected
## Example Usage
Before this fix:
```bash
$ export TMPDIR='/tmp/username' # Directory doesn't exist
$ python -c "import tempfile; print(tempfile.gettempdir())"
/tmp # Silently falls back, ignoring TMPDIR
```
After this fix:
```bash
$ export TMPDIR='/tmp/username' # Directory doesn't exist
$ python -c "from datasets.fingerprint import get_temporary_cache_files_directory; print(get_temporary_cache_files_directory())"
# Directory is automatically created and used
# Log: "Created TMPDIR directory: /tmp/username"
```
## Type of Change
- [x] Bug fix (non-breaking change which fixes an issue)
- [ ] New feature (non-breaking change which adds functionality)
- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected)
- [ ] Documentation update
---
**Note**: This implementation follows the approach suggested in the issue, automatically creating the TMPDIR directory when it doesn't exist, which provides the best user experience whilst maintaining security (we only create directories explicitly specified by the user via environment variable).
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fix(tests): stabilize flaky Hub LFS integration test
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[] | 2025-11-29T17:13:18Z
| 2025-12-09T15:37:49Z
| null |
NONE
| null | null | null | null |
## Problem
`test_push_dataset_dict_to_hub_overwrite_files` intermittently fails with:
```
BadRequestError: LFS pointer pointed to a file that does not exist
```
This has been causing the `deps-latest` integration tests to fail on main (visible in recent CI runs). I ran into this while working on the BIDS loader PR and dug into the root cause.
## Root Cause
Two race conditions in the test:
1. **LFS propagation timing** - Rapid successive `push_to_hub` calls don't wait for Hub to fully propagate LFS objects between pushes
2. **Repo name reuse** - The second test scenario reused the same repo name from scenario 1, creating a race between deletion and recreation
## Solution
- Add `_wait_for_repo_ready()` helper that polls `list_repo_files` to ensure the repo is consistent before subsequent operations
- Use a unique repo name (`ds_name_2`) for the second scenario, eliminating the delete/create race entirely
## Testing
All 4 integration test variants now pass:
- ✅ `ubuntu-latest, deps-latest` (was failing)
- ✅ `ubuntu-latest, deps-minimum`
- ✅ `windows-latest, deps-latest` (was failing)
- ✅ `windows-latest, deps-minimum`
Validated on fork: https://github.com/The-Obstacle-Is-The-Way/datasets/pull/4
## Related
- #7600 (push_to_hub concurrency)
- #6392 (push_to_hub connection robustness)
cc @lhoestq - small fix but should help CI reliability
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PR_kwDODunzps62HOM4
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Add type overloads to load_dataset for better static type inference
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7888). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-11-29T06:19:30Z
| 2025-12-08T12:06:57Z
| 2025-12-08T12:06:57Z
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CONTRIBUTOR
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Fixes #7883
This PR adds @overload decorators to load_dataset() to help type checkers like Pylance and mypy correctly infer the return type based on the split and streaming parameters.
Changes:
- Added typing imports (Literal, overload) to load.py
- Added 4 @overload signatures that map argument combinations to specific return types:
* split=None, streaming=False -> DatasetDict
* split specified, streaming=False -> Dataset
* split=None, streaming=True -> IterableDatasetDict
* split specified, streaming=True -> IterableDataset
This resolves the Pylance error where to_csv() was not recognized on Dataset objects returned by load_dataset(..., split='train'), since the type checker previously saw the return type as a Union that included types without to_csv().
No runtime behavior changes - this is purely a static typing improvement.
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fix(nifti): enable lazy loading for Nifti1ImageWrapper
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[] | 2025-11-29T01:40:27Z
| 2025-12-09T15:37:50Z
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NONE
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## Summary
- **Single-line fix**: Change `dataobj=nifti_image.get_fdata()` → `dataobj=nifti_image.dataobj`
- Preserves nibabel's `ArrayProxy` for true lazy loading instead of eagerly loading entire NIfTI files into memory
- Improves error handling: corrupted files now fail at access time with clear context instead of silently during decode
## Problem
The `Nifti1ImageWrapper.__init__` was calling `get_fdata()` which immediately loads the entire image into memory. For large 4D fMRI files (often 1-2GB), this causes:
1. **Memory issues** - Full data loaded during decode, not on demand
2. **Poor error handling** - Corrupted files crash at access time with unclear error messages (e.g., `EOFError` with no file path)
3. **No graceful recovery** - Entire dataset iteration fails on one bad file
## Solution
Use `nifti_image.dataobj` which preserves the underlying `ArrayProxy`, deferring actual I/O to `get_fdata()` calls.
## Test Plan
- [x] Added `test_nifti_lazy_loading` to verify `ArrayProxy` is preserved
- [x] All 22 existing NIfTI tests pass
- [x] End-to-end tested with real OpenNeuro data (ds000102)
- [x] CodeRabbit approved: "Switch to dataobj correctly restores nibabel's lazy loading semantics... This looks solid"
## Related
- Discovered while testing BIDS loader PR #7886
- Complements the NIfTI + NiiVue viewer work from #7878 and #7874
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PR_kwDODunzps62Gh1c
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feat(bids): Add BIDS dataset loader for neuroimaging data
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[] | 2025-11-29T01:22:06Z
| 2025-12-09T15:37:51Z
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NONE
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## Summary
Adds native BIDS (Brain Imaging Data Structure) dataset loading support using PyBIDS, enabling `load_dataset('bids', data_dir='/path/to/bids')` workflow for neuroimaging researchers.
**Contributes to #7804** (Support scientific data formats) - BIDS is a widely-used standard for organizing neuroimaging data built on NIfTI files.
## Changes
### Core Implementation
- `src/datasets/packaged_modules/bids/bids.py` - GeneratorBasedBuilder implementation
- `src/datasets/packaged_modules/bids/__init__.py` - Module exports
- `src/datasets/packaged_modules/__init__.py` - Registration with module registry
- `src/datasets/config.py` - `PYBIDS_AVAILABLE` config flag
- `setup.py` - Optional `pybids>=0.21.0` + nibabel dependency
### Features
- Automatic BIDS structure validation
- Subject/session/datatype filtering via config
- JSON sidecar metadata extraction
- NIfTI file decoding via existing Nifti feature
### Documentation & Tests
- `docs/source/bids_dataset.mdx` - User guide with examples
- `tests/packaged_modules/test_bids.py` - Unit tests (4 tests)
## Usage
```python
from datasets import load_dataset
# Load entire BIDS dataset
ds = load_dataset('bids', data_dir='/path/to/bids_dataset')
# Filter by subject/session
ds = load_dataset('bids',
data_dir='/path/to/bids_dataset',
subjects=['01', '02'],
sessions=['baseline']
)
# Access samples
sample = ds['train'][0]
print(sample['subject']) # '01'
print(sample['nifti'].shape) # (176, 256, 256)
print(sample['metadata']) # JSON sidecar data
```
## Test plan
- [x] All 4 unit tests pass (`pytest tests/packaged_modules/test_bids.py`)
- [x] `make quality` passes (ruff check)
- [x] End-to-end tested with real OpenNeuro data (ds000102)
## Context
This PR is part of the neuroimaging initiative discussed with @TobiasPitters. Follows the BIDS 1.10.1 specification and leverages the existing Nifti feature for NIfTI file handling.
Related PRs:
- #7874 (Nifti visualization support)
- #7878 (Replace papaya with niivue)
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PR_kwDODunzps62DBlN
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Add visualization paragraph to nifti readme
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[] | 2025-11-28T14:31:28Z
| 2025-11-28T15:01:29Z
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CONTRIBUTOR
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Add small paragraph and video.
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Fix 7846: add_column and add_item erroneously(?) require new_fingerprint parameter
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[
"@lhoestq can you help review this pull request?",
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7884). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-11-27T19:32:10Z
| 2025-12-04T16:09:51Z
| 2025-12-04T16:09:51Z
|
CONTRIBUTOR
| null | null | null | null |
Summary of the change:
Made new_fingerprint optional (Optional[str] = None) in Dataset.add_column and Dataset.add_item
Added a simple test to verify both methods work without providing a fingerprint
Why this change is safe:
The Dataset constructor already handles fingerprint=None by generating a new fingerprint automatically
No internal logic is broken — if a user provides a fingerprint, it’s still used as before
The change only affects the function signature, making it more user-friendly without changing any functionality
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Data.to_csv() cannot be recognized by pylance
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### Describe the bug
Hi, everyone ! I am a beginner with datasets.
I am testing reading multiple CSV files from a zip archive. The result of reading the dataset shows success, and it can ultimately be correctly saved to CSV.
Intermediate results:
```
Generating train split: 62973 examples [00:00, 175939.01 examples/s]
DatasetDict({
train: Dataset({
features: ['交易时间\t', '收支方向\t', '业务（产品）种类\t', '交易金额\t', '币种\t', '时点余额\t', '对手方名称\t', '对方机构名称\t', ' 对方钱包ID/账号\t', '交易对手名称\t', '交易对手编号\t', '交易流水号\t', '摘要\t', '附言\t', '备注\t', '用途\t', '客户流水号\t'],
num_rows: 62973
})
})
```
However, Pylance gives me the following error:
```
Cannot access attribute "to_csv" for class "DatasetDict"
Attribute "to_csv" is unknownPylance[reportAttributeAccessIssue](https://github.com/microsoft/pylance-release/blob/main/docs/diagnostics/reportAttributeAccessIssue.md)```
Cannot access attribute "to_csv" for class "IterableDatasetDict"
Attribute "to_csv" is unknownPylance[reportAttributeAccessIssue](https://github.com/microsoft/pylance-release/blob/main/docs/diagnostics/reportAttributeAccessIssue.md)
(method) to_csv: Unknown | ((path_or_buf: datasets.utils.typing.PathLike | BinaryIO, batch_size: int | None = None, num_proc: int | None = None, storage_options: dict[Unknown, Unknown] | None = None, **to_csv_kwargs: Unknown) -> int) | ((path_or_buf: datasets.utils.typing.PathLike | BinaryIO, batch_size: int | None = None, storage_options: dict[Unknown, Unknown] | None = None, **to_csv_kwargs: Unknown) -> int)
```
I ignored the error and continued executing to get the correct result:
```
Dataset({
features: ['交易时间\t', '收支方向\t', '业务（产品）种类\t', '交易金额\t', '币种\t', '时点余额\t', '对手方名称\t', '对方机构名称\t', '对方 钱包ID/账号\t', '交易对手名称\t', '交易对手编号\t', '交易流水号\t', '摘要\t', '附言\t', '备注\t', '用途\t', '客户流水号\t'],
num_rows: 62973
})
```
Since the data volume is small, I manually merged the CSV files, and the final result is consistent with what the program saved.
looks like :
<img width="1264" height="150" alt="Image" src="https://github.com/user-attachments/assets/743540d7-ad8c-4531-ae7e-de71a5243a32" />
### Steps to reproduce the bug
this is my code.
```
from datasets import load_dataset
def main():
url = "data/test.zip"
data_files = {"train": url}
dataset = load_dataset("csv", data_files=data_files,split="train", encoding="gbk", skiprows=2)
# print(dataset)
dataset.to_csv("data/test.csv")
if __name__ == "__main__":
main()
```
### Expected behavior
I want to know why this happens. Is there something wrong with my code?
### Environment info
OS: Windows 11 **upgrade from** OS: Windows_NT x64 10.0.22631
Editor:
VS Code Version: 1.106.2 (user setup)
"datasets" version = "4.4.1"
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I_kwDODunzps7anB6P
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|
Inconsistent loading of LFS-hosted files in epfml/FineWeb-HQ dataset
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### Describe the bug
Some files in the `epfml/FineWeb-HQ` dataset fail to load via the Hugging Face `datasets` library.
- xet-hosted files load fine
- LFS-hosted files sometimes fail
Example:
- Fails: https://huggingface.co/datasets/epfml/FineWeb-HQ/blob/main/data/CC-MAIN-2024-26/000_00003.parquet
- Works: https://huggingface.co/datasets/epfml/FineWeb-HQ/blob/main/data/CC-MAIN-2024-42/000_00027.parquet
Discussion: https://huggingface.co/datasets/epfml/FineWeb-HQ/discussions/2
### Steps to reproduce the bug
```python
from datasets import load_dataset
ds = load_dataset(
"epfml/FineWeb-HQ",
data_files="data/CC-MAIN-2024-26/000_00003.parquet",
)
```
Error message:
```
HfHubHTTPError: 403 Forbidden: None.
Cannot access content at: https://cdn-lfs-us-1.hf.co/repos/...
Make sure your token has the correct permissions.
...
<Error><Code>AccessDenied</Code><Message>Access Denied</Message></Error>
```
### Expected behavior
It should load the dataset for all files.
### Environment info
- python 3.10
- datasets 4.4.1
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PR_kwDODunzps61qI8F
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|
Fix spurious label column when directories match split names
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Issue - https://github.com/huggingface/datasets/issues/7880
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Spurious label column created when audiofolder/imagefolder directories match split names
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## Describe the bug
When using `audiofolder` or `imagefolder` with directories for **splits** (train/test) rather than class labels, a spurious `label` column is incorrectly created.
**Example:** https://huggingface.co/datasets/datasets-examples/doc-audio-4
```
from datasets import load_dataset
ds = load_dataset("datasets-examples/doc-audio-4")
print(ds["train"].features)
```
Shows 'label' column with ClassLabel(names=['test', 'train']) - incorrect!## Root cause
In `folder_based_builder.py`, the `labels` set is accumulated across ALL splits (line 77). When directories are `train/` and `test/`:
- `labels = {"train", "test"}` → `len(labels) > 1` → `add_labels = True`
- Spurious label column is created with split names as class labels
## Expected behavior
No `label` column should be added when directory names match split names.
## Proposed fix
Skip label inference when inferred labels match split names.
cc @lhoestq
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|
python core dump when downloading dataset
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[
"Hi @hansewetz I'm curious, for me it works just fine. Are you still observing the issue?",
"Yup ... still the same issue.\nHowever, after adding a ```sleep(1)``` call after the ``` for``` loop by accident during debugging, the program terminates properly (not a good solution though ... :-) ).\nAre there some threads created that handles the download that are still running when the program exits?\nHaven't had time yet to go through the code in ```iterable_dataset.py::IterableDataset```\n",
"Interesting, I was able to reproduce it, on a jupyter notebook the code runs just fine, as a Python script indeed it seems to never finish running (which is probably leading to the core dumped error). I'll try and take a look at the source code as well to see if I can figure it out.",
"Hi @hansewetz ,\nIf possible can I be assigned with this issue?\n\n",
"```If possible can I be assigned with this issue?```\nHi, I don't know how assignments work here and who can take decisions about assignments ... ",
"Hi @hansewetz and @Aymuos22, I have made some progress:\n\n1) Confirmed last working version is 3.1.0\n\n2) From 3.1.0 to 3.2.0, there was a change in how parquet files are read (see [here](https://github.com/huggingface/datasets/blob/main/src/datasets/packaged_modules/parquet/parquet.py/#168).\n\nThe issue seems to be the following code:\n\n```\nparquet_fragment.to_batches(\n batch_size=batch_size,\n columns=self.config.columns,\n filter=filter_expr,\n batch_readahead=0,\n fragment_readahead=0,\n )\n```\n\nAdding a `use_threads=False` parameter to the `to_batches` call solves the bug. However, this seems far from an optimal solution, since we'd like to be able to use multiple threads for reading the fragments. \n\nI'll keep investigating to see if there's a better solution.",
"Hi @lhoestq, may I ask if the current behaviour was expected by you folks and you don't think it needs solving, or should I keep on investigating a compromise between using multithreading / avoid unexpected behaviour? Thanks in advance :) ",
"Having the same issue. the code never stops executing. Using datasets 4.4.1\nTried with \"islice\" as well. When the streaming flag is True, the code doesn't end execution. On vs-code.",
"The issue on pyarrow side is here: https://github.com/apache/arrow/issues/45214 and the original issue in `datasets` here: https://github.com/huggingface/datasets/issues/7357\n\nIt would be cool to have a fix on the pyarrow side",
"Thank you very much @lhoestq, I'm reading the issue thread in pyarrow and realizing you've been raising awareness around this for a long time now. When I have some time I'll look at @pitrou's PR to see if I can get a better understanding of what's going on on pyarrow. "
] | 2025-11-24T06:22:53Z
| 2025-11-25T20:45:55Z
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### Describe the bug
When downloading a dataset in streamed mode and exiting the program before the download completes, the python program core dumps when exiting:
```
terminate called without an active exception
Aborted (core dumped)
```
Tested with python 3.12.3, python 3.9.21
### Steps to reproduce the bug
Create python venv:
```bash
python -m venv venv
./venv/bin/activate
pip install datasets==4.4.1
```
Execute the following program:
```
from datasets import load_dataset
ds = load_dataset("HuggingFaceFW/fineweb-2", 'hrv_Latn', split="test", streaming=True)
for sample in ds:
break
```
### Expected behavior
Clean program exit
### Environment info
described above
**note**: the example works correctly when using ```datasets==3.1.0```
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Replace papaya with niivue
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"@CloseChoice thanks for your work on this. As you mentioned, the prime developers for Papaya have moved on, so it is in maintenance mode, albeit it is mature and may fill all your requirements. \r\n\r\nPapaya does reflect the era of its creation, so it uses WebGL1 (which only supports 2D textures) for display and pako for decompression. In contrast, NiiVue uses WebGL2 (where 3D textures provide a native representation for volumes) and compression streams (x4 decoding speed). A major benefit of 3D textures is simple support for 3D volume rendering using ray casting. Note the Papaya README shows an isosurface rendering based on a triangulated mesh. In contrast, NiiVue can show both volume rendering (good for data with fuzzy boundaries) as well as surface rendering (good when a clean isosurface can be defined). I think the [gallery](https://niivue.com/gallery) provides a nice example of NiiVue capabilities as well as minimal recipes.\r\n\r\nI do agree that Papaya UI is more advanced: by design NiiVue is a graphic widget that can be embedded into a container that provides your preferred user interface (React, Angular, Vue, pure html, or even jupyter notebooks). \r\n\r\nI think DICOM support is a challenge for any tool for several reasons: the diversity of the implementations and compression methods (transfer syntaxes), the fact that in classic DICOM each 2D slice is saved as a separate file (though note modern enhanced DICOM can save an entire 3D volume or even 4D timeseries in a single file), and the rate that this format has evolved over time. Papaya uses [Daikon](https://github.com/rii-mango/Daikon) to handle DICOM images, and I think it is only one file at a time. In contrast, NiiVue provides plugins for complex image formats, so you can choose your desired tool. We do provide illustrate how to use [dcm2niix WASM](https://github.com/niivue/niivue-dcm2niix) as a DICOM loader, and it can extract coherent volumes from a random assortment of files or a manifest of files - see the [live demo](https://github.com/niivue/niivue-dcm2niix). Note that diakon development has halted, while dcm2niix is actively maintained, which impacts support for emerging compression methods (e.g. JPEG2000-HT). Having said that, if your primary focus is DICOM, [cornerstonejs](https://www.cornerstonejs.org/) is probably a better choice than NiiVue or Papaya.\r\n\r\nAnother feature that may or may not be worth noting is that NiiVue has a plugin model that allows you to use a lot of mature image processing tools. So you can do image conversion, image processing (itk-wasm, niimath), image registration (flirt, elastix) and edge-based AI models. [brainchop](https://brainchop.org/) illustrates edge-based AI model inference for brain segmentation, extraction and parcellation, though we provide minimal examples for ONNX, tensorflowjs and tinygrad. This would provide a convenient way for huggingface inference models to be shared. After training, the models could be converted to ONNX and deployed on a web page, allowing the user to drag-and-drop images and process them regardless of operating system or graphics card manufacturer. Since the AI model inference leverages the users own graphics card, the privacy issues and hardware scaling concerns of cloud distribution are mitigated.\r\n\r\n\r\n\r\n\r\n\r\n\r\n\r\n",
"@neurolabusc thanks so much for the nuanced and informative reply.\r\nI am convinced that niivue is the better option here, having 3D support is huge and Papaya's UI features are actually not necessary at all, and AFAIS we can get what we need and more with some additional configuration for niivue as well.\r\nThanks a lot for words about DICOM, though the focus of this PR is not NifTI and not DICOM, I think having one tool being able to load both (and potentially more formats) is best, I'll definitely test the live demo. My primary interest in your thoughts about DICOM is to enable visualization as a follow-up to this PR #https://github.com/huggingface/datasets/pull/7835. Even for the DICOM case NiiVue seems like a great option using the [dcm2niix](https://github.com/niivue/niivue-dcm2niix) webassembly plugin, I think the main challenge is here how we let the user organize files in an intuitive way (e.g. provide DICOM folder class, and a DICOM document class where one folder can contain multiple documents and 3d visualization is on the folder level). \r\n\r\nGiven that NiiVue is a modern neuroimaging viewer, well maintained and widely used and we have @neurolabusc attention in case of questions/problems I think we should go ahead with NiiVue.\r\n\r\n@lhoestq your thoughts are highly appreciated.",
"Following the @neurolabusc 's suggestion I updated to [ipyniivue](https://github.com/niivue/ipyniivue?tab=readme-ov-file) which helps so that we don't need to bother with javascript and speeds up load times since ipyniivue comes with a bundled niivue version and therefore avoids to download. Since DICOM is out of the picture for now, I consider this ready to be reviewed.",
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7878). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-11-21T22:19:56Z
| 2025-11-27T20:37:04Z
| 2025-11-27T18:00:19Z
|
CONTRIBUTOR
| null | null | null | null |
I was contacted by Chris Rorden whose group is developing NiiVue (see https://github.com/niivue/niivue), which leverages WebGL2 (in contrast to Papaya which is WebGL1 based). He also offered support in the implementation, which might come in handy in case of any questions later on (see DICOM implemenation). I completely overlooked NiiVue when searching for frameworks.
Development speed or lack thereof was already mentioned as a potential risk with Papaya. NiiVue is well and actively maintained, simply compare these two contribution charts:
NiiVue:
<img width="920" height="378" alt="image" src="https://github.com/user-attachments/assets/37a0a256-60aa-4758-bb07-97e421c68ae1" />
Papaya:
<img width="920" height="378" alt="image" src="https://github.com/user-attachments/assets/1e1cf0c9-ec0a-4ffc-ae03-a79ea12bcb3b" />
I gave NiiVue a try and it supports all features Papaya does, though I find Papaya's UI slightly more appealing but that is just personal taste. There is also a 3D image of the scanned object included in the NiiVue UI, but that is possible for Papaya aswell (at least in some way, check the image in their github repo README.md).
```python
from datasets import load_dataset
# new dataset compared to papaya PR, this has more interesting images
ds = load_dataset("TobiasPitters/nifti-papaya-testdata",
split="train")
ds[1]['nifti'] # ds[2]['nifti'] is also interesting
```
Here's a brief video how this looks with NiiVue: https://github.com/user-attachments/assets/3f2a52d4-2109-45e2-aca8-e4a4b1e46b32
NOTE: I explicitly created this as draft PR since I suspect the DICOM support to be a crucial factor to decide which of these two is better suited for our needs. DICOM is supported by Papaya, and for NiiVue as well using a plugin, but as far as I understand one DICOM file contains one 2D image, therefore support for loading a whole folder, containing all 2D layers for a complete 3D image is desired. NiiVue supports this according to their docs, I am unsure about Papaya.
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work around `tempfile` silently ignoring `TMPDIR` if the dir doesn't exist
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[
"Hi! Just created a Pull Request (#7890) to try to fix this using your suggestions. I hope it helps!"
] | 2025-11-21T19:51:48Z
| 2025-11-29T20:37:42Z
| null |
CONTRIBUTOR
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This should help a lot of users running into `No space left on device` while using `datasets`. Normally the issue is is that `/tmp` is too small and the user needs to use another path, which they would normally set as `export TMPDIR=/some/big/storage`
However, the `tempfile` facility that `datasets` and `pyarrow` use is somewhat broken. If the path doesn't exist it'd ignore it and fall back to using `/tmp`. Watch this:
```
$ export TMPDIR='/tmp/username'
$ python -c "\
import os
import tempfile
print(os.environ['TMPDIR'])
print(tempfile.gettempdir())"
/tmp/username
/tmp
```
Now let's ensure the path exists:
```
$ export TMPDIR='/tmp/username'
$ mkdir -p $TMPDIR
$ python -c "\
import os
import tempfile
print(os.environ['TMPDIR'])
print(tempfile.gettempdir())"
/tmp/username
/tmp/username
```
So I recommend `datasets` do either of the 2:
1. assert if `$TMPDIR` dir doesn't exist, telling the user to create it
2. auto-create it
The reason for (1) is that I don't know why `tempdir` doesn't auto-create the dir - perhaps some security implication? I will let you guys make the decision, but the key is not to let things silently fall through and the user puzzling why no matter what they do they can't break past `No space left on device` while using `datasets`
Thank you.
I found this via https://stackoverflow.com/questions/37229398/python-tempfile-gettempdir-does-not-respect-tmpdir while trying to help a colleague to solve this exact issue.
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test: add verification for HuggingFaceM4/InterleavedWebDocuments
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[] | 2025-11-21T15:42:09Z
| 2025-11-21T15:42:09Z
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NONE
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Adds an integration test for the `HuggingFaceM4/InterleavedWebDocuments` dataset.
- Gracefully skips if the dataset is not yet available on the Hub
- Checks basic loading and structure once it becomes available
Closes #7394
First-time contributor to `datasets` — really excited about this! Happy to make any adjustments needed. 🙂
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|
Add quickstart example to datasets README
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[] | 2025-11-20T22:13:52Z
| 2025-11-20T22:13:52Z
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|
Nifti visualization support
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7874). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"I tested in Colab and it works perfectly :) now I want to add `_repr_html_` everywhere xD\r\n\r\nRe: testing, I think it's fine to test manually such features"
] | 2025-11-19T21:56:56Z
| 2025-11-21T12:41:43Z
| 2025-11-21T12:31:18Z
|
CONTRIBUTOR
| null | null | null | null |
closes #7870
leverage Papaya to visualize nifti images. For this I created a Wrapper class for `nibabel.nifti1.Nifti1Image` that provides the same interface but exposes an additional `_repr_html_` method, which is needed to visualize the image in jupyter (didn't test in colab, but that should work equivalently).
Code to test (execute in a notebook):
```python
from datasets import load_dataset
ds = load_dataset("TobiasPitters/nifti-nitest-extracted",
split="train")
image = ds[1]
image
```
Here a small video, not the most exciting scan though:
https://github.com/user-attachments/assets/1cca5f01-6fd2-48ef-a4d7-a92c1259c224
Am open to good ways to test this.
EDIT: papaya also supports dicom, didn't test it yet though
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PR_kwDODunzps60a_IZ
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|
Fix chunk casting and schema unification in dataset
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"\r\n@lhoestq would like to hear from you!\r\n"
] | 2025-11-19T18:43:47Z
| 2025-11-22T19:51:30Z
| null |
CONTRIBUTOR
| null | null | null | null |
Updated chunk handling to cast to expected schema when features are provided or to unify schemas when not. This ensures proper schema alignment for the yielded batches.
fixes #7872
This PR fixes a bug where `IterableDataset` created from a generator with explicit `features` parameter would fail during arrow operations (like `.to_pandas()`) when the data contains missing or null values.
## Problem
When an `IterableDataset` is created with explicit features but the generator yields data with missing values (e.g., empty lists), PyArrow would infer different schemas for different batches based on the actual data rather than using the provided schema. This caused `ArrowInvalid` errors when trying to concatenate batches with mismatched schemas.
### Example error:
```python
pyarrow.lib.ArrowInvalid: Schema at index 1 was different:
a: int64
b: list
vs
a: int64
b: list>
```
## Solution
Modified `RebatchedArrowExamplesIterable._iter_arrow()` to:
1. Cast chunks to the expected schema when explicit features are provided
2. Unify schemas across chunks when no explicit features are set
3. Gracefully handle cast failures by falling back to the original chunk
This ensures that the user-provided schema is respected throughout the iteration process.
## Testing
Verified the fix with the following test case:
```python
import datasets
from datasets import features
def test_to_pandas_works_with_explicit_schema():
common_features = features.Features(
{
"a": features.Value("int64"),
"b": features.List({"c": features.Value("int64")}),
}
)
def row_generator():
data = [{"a": 1, "b": []}, {"a": 1, "b": [{"c": 1}]}]
for row in data:
yield row
d = datasets.IterableDataset.from_generator(row_generator, features=common_features)
print("Iterating…")
for _ in d.to_pandas():
pass
test_to_pandas_works_with_explicit_schema()
```
Before Patch -
```
@ArjunJagdale ➜ /workspaces/datasets (main) $ python test_arjun.py
Iterating…
Traceback (most recent call last):
File "/workspaces/datasets/test_arjun.py", line 24, in <module>
test_to_pandas_works_with_explicit_schema()
File "/workspaces/datasets/test_arjun.py", line 21, in test_to_pandas_works_with_explicit_schema
for _ in d.to_pandas():
File "/workspaces/datasets/src/datasets/iterable_dataset.py", line 3736, in to_pandas
table = pa.concat_tables(list(self.with_format("arrow").iter(batch_size=1000)))
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/workspaces/datasets/src/datasets/iterable_dataset.py", line 2596, in iter
for key, pa_table in iterator:
File "/workspaces/datasets/src/datasets/iterable_dataset.py", line 2111, in _iter_arrow
for key, pa_table in self.ex_iterable._iter_arrow():
File "/workspaces/datasets/src/datasets/iterable_dataset.py", line 632, in _iter_arrow
yield new_key, pa.Table.from_batches(chunks_buffer)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "pyarrow/table.pxi", line 5039, in pyarrow.lib.Table.from_batches
File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
pyarrow.lib.ArrowInvalid: Schema at index 1 was different:
a: int64
b: list<item: null>
vs
a: int64
b: list<item: struct<c: int64>>
```
After Patch -
```
@ArjunJagdale ➜ /workspaces/datasets (main) $ python test_arjun.py
Iterating…
@ArjunJagdale ➜ /workspaces/datasets (main) $
```
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I_kwDODunzps7ZLixl
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|
IterableDataset does not use features information in to_pandas
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[
"Created A PR!",
"Another test script that can be used to test the behavior - \n\n```\nimport datasets\nfrom datasets import features\n\ndef test_crash():\n common_features = features.Features({\n \"a\": features.Value(\"int64\"),\n \"b\": features.List({\"c\": features.Value(\"int64\")}),\n })\n\n def row_generator():\n yield {\"a\": 1, \"b\": []}\n yield {\"a\": 1, \"b\": [{\"c\": 1}]}\n\n d = datasets.IterableDataset.from_generator(row_generator, features=common_features)\n\n list(d.to_pandas()) # <-- this triggers the crash\n\n```"
] | 2025-11-19T17:12:59Z
| 2025-11-19T18:52:14Z
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### Describe the bug
`IterableDataset` created from generator with explicit `features=` parameter seems to ignore provided features description for certain operations, e.g. `.to_pandas(...)` when data coming from the generator has missing values.
### Steps to reproduce the bug
```python
import datasets
from datasets import features
def test_to_pandas_works_with_explicit_schema():
common_features = features.Features(
{
"a": features.Value("int64"),
"b": features.List({"c": features.Value("int64")}),
}
)
def row_generator():
data = [{"a": 1, "b": []}, {"a": 1, "b": [{"c": 1}]}]
for row in data:
yield row
d = datasets.IterableDataset.from_generator(row_generator, features=common_features)
for _ in d.to_pandas():
pass
# _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
# .venv/lib/python3.13/site-packages/datasets/iterable_dataset.py:3703: in to_pandas
# table = pa.concat_tables(list(self.with_format("arrow").iter(batch_size=1000)))
# ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
# .venv/lib/python3.13/site-packages/datasets/iterable_dataset.py:2563: in iter
# for key, pa_table in iterator:
# ^^^^^^^^
# .venv/lib/python3.13/site-packages/datasets/iterable_dataset.py:2078: in _iter_arrow
# for key, pa_table in self.ex_iterable._iter_arrow():
# ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
# .venv/lib/python3.13/site-packages/datasets/iterable_dataset.py:599: in _iter_arrow
# yield new_key, pa.Table.from_batches(chunks_buffer)
# ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
# pyarrow/table.pxi:5039: in pyarrow.lib.Table.from_batches
# ???
# pyarrow/error.pxi:155: in pyarrow.lib.pyarrow_internal_check_status
# ???
# _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
# > ???
# E pyarrow.lib.ArrowInvalid: Schema at index 1 was different:
# E a: int64
# E b: list<item: null>
# E vs
# E a: int64
# E b: list<item: struct<c: int64>>
# pyarrow/error.pxi:92: ArrowInvalid
```
### Expected behavior
arrow operations use schema provided through `features=` and not the one inferred from the data
### Environment info
- datasets version: 4.4.1
- Platform: macOS-15.7.1-arm64-arm-64bit-Mach-O
- Python version: 3.13.1
- huggingface_hub version: 1.1.4
- PyArrow version: 22.0.0
- Pandas version: 2.3.3
- fsspec version: 2025.10.0
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Reqwest Error: HTTP status client error (429 Too Many Requests)
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"the dataset repo: `https://huggingface.co/datasets/nvidia/PhysicalAI-Robotics-GR00T-X-Embodiment-Sim`",
"Hi @yanan1116,\n\nThanks for the detailed report! However, this issue was filed in the wrong repository. This is a `huggingface_hub` issue, not a `datasets` issue.\n\nLooking at your traceback, you're using the `hf download` CLI command (from `huggingface_hub`), and the error occurs in `huggingface_hub/file_download.py` at line 571 in the `xet_get` function. The `datasets` library is not involved in this download at all.\n\nThe 429 error means the CAS (Content Addressable Storage) service at `https://cas-server.xethub.hf.co` is rate-limiting your requests. The `huggingface_hub` library currently doesn't have automatic retry logic for 429 errors from the CAS service.\n\nPlease reopen this issue at: https://github.com/huggingface/huggingface_hub/issues"
] | 2025-11-19T16:52:24Z
| 2025-11-30T13:38:32Z
| 2025-11-30T13:38:32Z
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### Describe the bug
full error message:
```
Traceback (most recent call last):
File "/home/yanan/miniconda3/bin/hf", line 7, in <module>
sys.exit(main())
~~~~^^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/cli/hf.py", line 56, in main
app()
~~~^^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/typer/main.py", line 327, in __call__
raise e
File "/home/yanan/miniconda3/lib/python3.13/site-packages/typer/main.py", line 310, in __call__
return get_command(self)(*args, **kwargs)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/click/core.py", line 1161, in __call__
return self.main(*args, **kwargs)
~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/typer/core.py", line 803, in main
return _main(
self,
...<6 lines>...
**extra,
)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/typer/core.py", line 192, in _main
rv = self.invoke(ctx)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/click/core.py", line 1697, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/click/core.py", line 1443, in invoke
return ctx.invoke(self.callback, **ctx.params)
~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/click/core.py", line 788, in invoke
return __callback(*args, **kwargs)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/typer/main.py", line 691, in wrapper
return callback(**use_params)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/cli/download.py", line 188, in download
_print_result(run_download())
~~~~~~~~~~~~^^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/cli/download.py", line 149, in run_download
return snapshot_download(
repo_id=repo_id,
...<10 lines>...
dry_run=dry_run,
)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/utils/_validators.py", line 89, in _inner_fn
return fn(*args, **kwargs)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/_snapshot_download.py", line 451, in snapshot_download
thread_map(
~~~~~~~~~~^
_inner_hf_hub_download,
^^^^^^^^^^^^^^^^^^^^^^^
...<3 lines>...
tqdm_class=tqdm_class,
^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/tqdm/contrib/concurrent.py", line 69, in thread_map
return _executor_map(ThreadPoolExecutor, fn, *iterables, **tqdm_kwargs)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/tqdm/contrib/concurrent.py", line 51, in _executor_map
return list(tqdm_class(ex.map(fn, *iterables, chunksize=chunksize), **kwargs))
File "/home/yanan/miniconda3/lib/python3.13/site-packages/tqdm/std.py", line 1181, in __iter__
for obj in iterable:
^^^^^^^^
File "/home/yanan/miniconda3/lib/python3.13/concurrent/futures/_base.py", line 619, in result_iterator
yield _result_or_cancel(fs.pop())
~~~~~~~~~~~~~~~~~^^^^^^^^^^
File "/home/yanan/miniconda3/lib/python3.13/concurrent/futures/_base.py", line 317, in _result_or_cancel
return fut.result(timeout)
~~~~~~~~~~^^^^^^^^^
File "/home/yanan/miniconda3/lib/python3.13/concurrent/futures/_base.py", line 449, in result
return self.__get_result()
~~~~~~~~~~~~~~~~~^^
File "/home/yanan/miniconda3/lib/python3.13/concurrent/futures/_base.py", line 401, in __get_result
raise self._exception
File "/home/yanan/miniconda3/lib/python3.13/concurrent/futures/thread.py", line 59, in run
result = self.fn(*self.args, **self.kwargs)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/_snapshot_download.py", line 431, in _inner_hf_hub_download
hf_hub_download( # type: ignore
~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^
repo_id,
^^^^^^^^
...<14 lines>...
dry_run=dry_run,
^^^^^^^^^^^^^^^^
)
^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/utils/_validators.py", line 89, in _inner_fn
return fn(*args, **kwargs)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/file_download.py", line 986, in hf_hub_download
return _hf_hub_download_to_local_dir(
# Destination
...<16 lines>...
dry_run=dry_run,
)
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/file_download.py", line 1390, in _hf_hub_download_to_local_dir
_download_to_tmp_and_move(
~~~~~~~~~~~~~~~~~~~~~~~~~^
incomplete_path=paths.incomplete_path(etag),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
...<8 lines>...
tqdm_class=tqdm_class,
^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/file_download.py", line 1791, in _download_to_tmp_and_move
xet_get(
~~~~~~~^
incomplete_path=incomplete_path,
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
...<4 lines>...
tqdm_class=tqdm_class,
^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/home/yanan/miniconda3/lib/python3.13/site-packages/huggingface_hub/file_download.py", line 571, in xet_get
download_files(
~~~~~~~~~~~~~~^
xet_download_info,
^^^^^^^^^^^^^^^^^^
...<3 lines>...
progress_updater=[progress_updater],
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
RuntimeError: Data processing error: CAS service error : Reqwest Error: HTTP status client error (429 Too Many Requests), domain: https://cas-server.xethub.hf.co/reconstructions/04b8a4667b84b3b874a6a2f070cec88920f6289e71185d69fa87e3cf29834710
```
### Steps to reproduce the bug
my command
```bash
hf download nvidia/PhysicalAI-Robotics-GR00T-X-Embodiment-Sim --repo-type dataset --include "single_panda_gripper.CoffeePressButton/**" --local-dir /home/yanan/robotics/Isaac-GR00T/gr00t_dataset_official/
```
### Expected behavior
expect the data can be downloaded without any issue
### Environment info
huggingface_hub 1.1.4
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| 3,642,209,953
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I_kwDODunzps7ZF7ah
| 7,870
|
Visualization for Medical Imaging Datasets
|
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"It would be amazing to be able to show the Papaya UI in google colab / jupyter notebook. IIRC both allow serving javascript via nbextensions that we can surely use in HTML() objects.\n\nAlternatively we could also start with a simple approach and dump the medical image data as a video file that goes through the slices, so we don't need javascript."
] | 2025-11-19T11:05:39Z
| 2025-11-21T12:31:19Z
| 2025-11-21T12:31:19Z
|
CONTRIBUTOR
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This is a followup to: https://github.com/huggingface/datasets/pull/7815.
I checked the possibilities to visualize the nifti (and potentially dicom), and here's what I found:
- https://github.com/aces/brainbrowser, AGPL3 license, last commit 3 months ago, latest (github) release from 2017. It's available on jsdelivr: https://www.jsdelivr.com/package/npm/brainbrowser (but that is from 2015!)
- https://github.com/rii-mango/Papaya, custom but BSD-style license that would require datasets to list the conditions in their readme somewhere, last commit June 2024. I looked into this library and it looks mature and good enough for our use case, but just working on it for a short time I wasn't able to get this to work, but am sure we could get this working, would probably require some JS on datasets' end. Available on jsdelivr as well: https://www.jsdelivr.com/package/npm/papaya-viewer. Seems like it's frequently loaded.
- https://github.com/hanayik/niivue, BSD3 license, last commit May 26, 2021. Archived. Doesn't look like an option.
I think the only real option for us Papaya, but there is also the risk that we'll end up with an unmaintained package after a while, since development seems to be slow or even halted.
I think conceptually we would need to figure out how we can build a good solution for visualizing Medical Image data. On shap, we have a separate javascript folder in which we render visualizations, this could be a blueprint but will require a bundler, etc. Alternatively one could go with a naive approach to just write some html code in a python string and load the package via jsdelivr.
@lhoestq thoughts?
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Why does dataset merge fail when tools have different parameters?
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"Hi @hitszxs,\n This is indeed by design,\n\nThe `datasets` library is built on top of [Apache Arrow](https://arrow.apache.org/), which uses a **columnar storage format** with strict schema requirements. When you try to concatenate/merge datasets, the library checks if features can be aligned using the [`_check_if_features_can_be_aligned`](https://github.com/huggingface/datasets/blob/main/src/datasets/features/features.py#L2297-L2316) function.\n\nTwo datasets can be merged if:\n1. Columns with the same name have the **same type**, OR\n2. One of them has `Value(\"null\")` (representing missing data)\n\nFor struct types (nested dictionaries like your tool schemas), **all fields must match exactly**. This ensures type safety and efficient columnar storage.\n\n## Workarounds for Your Use Case\n Store tools as JSON strings\n\nInstead of using nested struct types, store the tool definitions as JSON strings\n\n\n"
] | 2025-11-18T08:33:04Z
| 2025-11-30T03:52:07Z
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Hi, I have a question about SFT (Supervised Fine-tuning) for an agent model.
Suppose I want to fine-tune an agent model that may receive two different tools: tool1 and tool2. These tools have different parameters and types in their schema definitions.
When I try to merge datasets containing different tool definitions, I get the following error:
TypeError: Couldn't cast array of type
struct<refundFee: struct<description: string, type: string>, ... , servicerId: struct<description: string, type: string>>
to
{
'refundFee': {'description': Value(dtype='string'), 'type': Value(dtype='string')},
...
'templateId': {'description': Value(dtype='string'), 'type': Value(dtype='string')}
}
From my understanding, the merge fails because the tools column's nested structure is different across datasets — e.g., one struct contains an extra field servicerId while the other does not. This causes HuggingFace Datasets (and its underlying Apache Arrow schema) to reject the merge.
My question is: why is it designed this way?
Is this strict schema matching a hard requirement of the library?
Is there a recommended way to merge datasets with different tool schemas (different parameters and types)?
For an agent model supporting multiple tools, what's the best practice for preparing/merging training data without losing flexibility?
Any guidance or design rationale would be greatly appreciated. Thanks!
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I_kwDODunzps7Ygnj8
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|
Data duplication with `split_dataset_by_node` and `interleaved_dataset`
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[
"Hi @ValMystletainn ,\nCan I be assigned this issue?",
"> split_dataset_by_node\n\nHello, I have some questions about your intended use: (1) It seems unnecessary to use interleaving for a single dataset. (2) For multiple datasets, it seems possible to interleave first and then split by node?"
] | 2025-11-17T09:15:24Z
| 2025-11-29T03:21:34Z
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### Describe the bug
Data duplication in different rank, when process a iterabledataset with first `split_dataset_by_node` and then `interleaved_dataset`
### Steps to reproduce the bug
I have provide a minimum scripts
```python
import os
from datasets import interleave_datasets, load_dataset
from datasets.distributed import split_dataset_by_node
path = "/mnt/wwx/datasets/fineweb/data/CC-MAIN-2013-20/"
files = [os.path.join(path, fn) for fn in os.listdir(path)]
dataset = load_dataset("parquet", split="train", data_files=files, streaming=True)
print(f"{dataset.n_shards=}")
dataset_rank0 = split_dataset_by_node(dataset, 0, 4)
dataset_rank1 = split_dataset_by_node(dataset, 1, 4)
dataset_rank0_interleaved = interleave_datasets([dataset_rank0], seed=42, probabilities=[1.0])
dataset_rank1_interleaved = interleave_datasets([dataset_rank1], seed=42, probabilities=[1.0])
print("print the first sample id from all datasets")
print("dataset", next(iter(dataset))['id'])
print("dataset_rank0", next(iter(dataset_rank0))['id'])
print("dataset_rank1", next(iter(dataset_rank1))['id'])
print("dataset_rank0_interleaved", next(iter(dataset_rank0_interleaved))['id'])
print("dataset_rank1_interleaved", next(iter(dataset_rank1_interleaved))['id'])
dataset_rank0_shard = dataset.shard(4, 0)
dataset_rank1_shard = dataset.shard(4, 1)
dataset_rank0_shard_interleaved = interleave_datasets([dataset_rank0_shard], seed=42, probabilities=[1.0])
dataset_rank1_shard_interleaved = interleave_datasets([dataset_rank1_shard], seed=42, probabilities=[1.0])
print("dataset_rank0_shard", next(iter(dataset_rank0_shard))['id'])
print("dataset_rank1_shard", next(iter(dataset_rank1_shard))['id'])
print("dataset_rank0_shard_interleaved", next(iter(dataset_rank0_shard_interleaved))['id'])
print("dataset_rank1_shard_interleaved", next(iter(dataset_rank1_shard_interleaved))['id'])
```
I just use a subfold of C4 with 14 paruets to do the quick run and get
```
dataset.n_shards=14
print the first sample id from all datasets
dataset <urn:uuid:c84a7f00-f3e8-4b67-baa4-df5adaf23bae>
dataset_rank0 <urn:uuid:c84a7f00-f3e8-4b67-baa4-df5adaf23bae>
dataset_rank1 <urn:uuid:6b7da64f-c26e-4086-aef5-4b6f01106223>
dataset_rank0_interleaved <urn:uuid:c84a7f00-f3e8-4b67-baa4-df5adaf23bae>
dataset_rank1_interleaved <urn:uuid:c84a7f00-f3e8-4b67-baa4-df5adaf23bae>
dataset_rank0_shard <urn:uuid:c84a7f00-f3e8-4b67-baa4-df5adaf23bae>
dataset_rank1_shard <urn:uuid:67cf7216-dd05-4f55-a28a-1a1c96989c51>
dataset_rank0_shard_interleaved <urn:uuid:c84a7f00-f3e8-4b67-baa4-df5adaf23bae>
dataset_rank1_shard_interleaved <urn:uuid:67cf7216-dd05-4f55-a28a-1a1c96989c51>
```
### Expected behavior
the first sample of `dataset_rank0_interleaved` and `dataset_rank1_interleaved` should be different, as other `rank0` `rank1` couples.
I have dive into the function and try to find how it work in `split -> interleaved` process.
the `split_dataset_by_node` of iterable dataset does't not change `._ex_iterable` attribute of the dataset. it just set the distributed config in dataset, and the distributed dataset is used in actually `__iter__` call, to handle with shard split or sample skipping.
however, in `interleaved_dataset` of iterable dataset. it copy out all of the `._ex_iterable` of provided datasets, and consist a new `_ex_iterable`, so the missing copy of `distributed config` caused the data duplication in different dp rank.
So I may first ask, is it an unexpected using order of those function, which means:
- always do `split_dataset_by_node` at final rather than in middle way.
- or use `dataset.shard(dp_size, dp_rank)` rather than `split_dataset_by_node` in case similar of mine.
if the using order is permiited, I think it is a bug, and I can do a PR to fix it
(I meet this bug in real training, related issue is https://github.com/ByteDance-Seed/VeOmni/issues/200 if it helps.
### Environment info
datasets 4.4.1
ubuntu 20.04
python 3.11.4
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NonMatchingSplitsSizesError when loading partial dataset files
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[
"While using verification_mode='no_checks' parameter in load_dataset() can bypass this validation, this solution is not intuitive or convenient for most users, especially those who are not familiar with all the parameters of the load_dataset() function.\n\n```python\nbook_corpus_ds = load_dataset(\n \"SaylorTwift/the_pile_books3_minus_gutenberg\",\n name=\"default\",\n data_files=\"data/train-00000-of-00213-312fd8d7a3c58a63.parquet\",\n split=\"train\",\n cache_dir=\"./data\",\n verification_mode='no_checks'\n)\n```",
"Thanks for the report and reproduction steps @QingGo \n@lhoestq which one of the following looks like a nicer way to handle this?\n\n1] Skip split-size validation entirely for partial loads\nIf the user passes data_files manually and it represents only a subset, then verify_splits() should simply not run, or skip validation only for that split.\n\n2] Replace the error with a warning\n\n3] Automatically detect partial-load cases(i mean we can try this out!)\n\nAssume this, \nIf data_files is provided AND\nthe number of provided files ≠ number of expected files in metadata,\nthen treat it as a partial load and disable strict verification.\n"
] | 2025-11-13T12:03:23Z
| 2025-11-16T15:39:23Z
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### Describe the bug
When loading only a subset of dataset files while the dataset's README.md contains split metadata, the system throws a NonMatchingSplitsSizesError . This prevents users from loading partial datasets for quick validation in cases of poor network conditions or very large datasets.
### Steps to reproduce the bug
1. Use the Hugging Face `datasets` library to load a dataset with only specific files specified
2. Ensure the dataset repository has split metadata defined in README.md
3. Observe the error when attempting to load a subset of files
```python
# Example code that triggers the error
from datasets import load_dataset
book_corpus_ds = load_dataset(
"SaylorTwift/the_pile_books3_minus_gutenberg",
name="default",
data_files="data/train-00000-of-00213-312fd8d7a3c58a63.parquet",
split="train",
cache_dir="./data"
)
```
### Error Message
```
Traceback (most recent call last):
File "/Users/QingGo/code/llm_learn/src/data/clean_cc_bc.py", line 13, in <module>
book_corpus_ds = load_dataset(
"SaylorTwift/the_pile_books3_minus_gutenberg",
...
File "/Users/QingGo/code/llm_learn/.venv/lib/python3.13/site-packages/datasets/utils/info_utils.py", line 77, in verify_splits
raise NonMatchingSplitsSizesError(str(bad_splits))
datasets.exceptions.NonMatchingSplitsSizesError: [{'expected': SplitInfo(name='train', num_bytes=106199627990.47722, num_examples=192661, shard_lengths=None, dataset_name=None), 'recorded': SplitInfo(name='train', num_bytes=454897326, num_examples=905, shard_lengths=None, dataset_name='the_pile_books3_minus_gutenberg')}]
```
### Expected behavior
When loading partial dataset files, the system should:
1. Skip the `NonMatchingSplitsSizesError` validation, OR
2. Only log a warning message instead of raising an error
### Environment info
- `datasets` version: 4.3.0
- Platform: macOS-15.7.1-arm64-arm-64bit-Mach-O
- Python version: 3.13.2
- `huggingface_hub` version: 0.36.0
- PyArrow version: 22.0.0
- Pandas version: 2.3.3
- `fsspec` version: 2025.9.0
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docs: add Python version requirement note to installation section
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[] | 2025-11-13T09:54:35Z
| 2025-11-13T09:54:35Z
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Added note about Python version requirement for conda installation.
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[FEAT] MIDI feature support
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7865). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-11-13T08:31:51Z
| 2025-11-14T13:58:52Z
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This PR adds a new `Midi` feature for reading and importing MIDI files into the datasets.
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add_column and add_item erroneously(?) require new_fingerprint parameter
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"Take this with a grain of salt, this is just my personal understanding:\nWhile you technically can overwrite the new_fingerprint with a string, e.g.\n```python\nt = d.add_column(\"new_column\", col_value, new_fingerprint=\"dummy_fp\")\nassert t._fingerprint == \"dummy_fp\" # this is true and will pass\n```\nthis is not desired since the fingerprint should be calculated based on the operations (and their arguments) to be unique. This is handled by the [fingerprint_transform](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L6077) function which needs a \"new_fingerprint\" keyword argument and creates a unique hash if its value is not set, see [here](https://github.com/huggingface/datasets/blob/main/src/datasets/fingerprint.py#L432). So it is probably safer to not document this keyword, since one doesn't want the user to actually use it and it's only a feature in very limited cases for people really knowing what they are doing. The thing that might be bugging people who read the code is that `new_fingerprint` seems to be required for `add_item` and `add_column` but it is actually set by the decorator (in which's definition it is optional), so maybe changing the signature of `add_item` and `add_column` to `new_fingerprint: Optional[str] = None` would make sense, since this is also how it's handled in the other cases (created by claude):\n\n - [flatten](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L2034)\n - [cast_column](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L2165)\n - [remove_columns](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L2209)\n - [rename_column](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L2263)\n - [rename_columns](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L2329)\n - [select_columns](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L2397)\n - [batch](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L3760)\n - [filter](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L3813)\n - [flatten_indices](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L3959)\n - [select](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L4038)\n - [_select_contiguous](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L4128)\n - [sort](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L4376)\n - [shuffle](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L4506)\n - [train_test_split](https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L4641)\nSo as you mentioned, I believe the methods erronously require the `new_fingerprint` parameter and making them optional is a little consistency win.",
"Any updates on this? Current behavior suggests that user is supposed to pass in the `new_fingerprint` argument, while examples in documentation doesn't include that argument at all."
] | 2025-11-13T02:56:49Z
| 2025-12-07T14:41:40Z
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### Describe the bug
Contradicting their documentation (which doesn't mention the parameter at all), both Dataset.add_column and Dataset.add_item require a new_fingerprint string. This parameter is passed directly to the dataset constructor, which has the fingerprint parameter listed as optional; is there any reason it shouldn't be optional in these methods as well?
### Steps to reproduce the bug
Reproduction steps:
1. Look at the function signature for add_column: https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L6078
2. Repeat for add_item: https://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/arrow_dataset.py#L6336
### Expected behavior
add_column and add_item should either set the fingerprint parameter to optional or include it in their docstrings
### Environment info
Not environment-dependent
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Support hosting lance / vortex / iceberg / zarr datasets on huggingface hub
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"Kudos!",
"So cool ! Would love to see support for lance :)",
"@lhoestq thanks for your support! Any suggestions across `datasets` or `huggingface_hub` projects to make this happen?\n\nI just noticed this blog post: https://huggingface.co/blog/streaming-datasets\n\nDo you know if `hfFileSystem` from `huggingface_hub` is flexible enough to accommodate lance? I don't want to `open` and scan a file, I want to create generators with the `lance.dataset.to_batches()` from each fragment (partition) that I can iterate over in a distributed dataloader.\n\nIdeally, something like this should just work:\n\n```\nimport lance\nlance_ds_path = f\"hf://datasets/{dataset_id}/{path_in_repo}.lance\"\nds = lance.dataset(lance_ds_path)\nfragments = ds.get_fragments()\nfragment_generators = []\nfor fragment in fragments:\n fragment_generators = fragment.to_batches()\n```\n\nLooking at the huggingface blog post, I think we might need a PR into `pyarrow` to create a `LanceFragmentScanOptions` class that subclasses [pyarrow.dataset.FragmentScanOptions](https://arrow.apache.org/docs/python/generated/pyarrow.dataset.FragmentScanOptions.html#pyarrow.dataset.FragmentScanOptions) cc @prrao87, @changhiskhan",
"> Do you know if HfFileSystem from huggingface_hub is flexible enough to accommodate lance?\n\nit provides file-like objects for files on HF, and works using range requests. PyArrow uses HfFileSystem for HF files already\n\nThough in the Parquet / PyArrow case the data is read generally row group per row group (using range requests with a minimum size `range_size_limit ` to optimize I/O in case of small row groups)\n\nPS: there is an equivalent to HfFileSystem in rust in OpenDAL, but it only supports read from HF, not write (yet ?)\n\n> I don't want to open and scan a file, I want to create generators with the lance.dataset.to_batches() from each fragment (partition) that I can iterate over in a distributed dataloader.\n\nWe do something very similar for Parquet here: \n\nhttps://github.com/huggingface/datasets/blob/17f40a318a1f8c7d33c2a4dd17934f81d14a7f57/src/datasets/packaged_modules/parquet/parquet.py#L168-L169",
"Hi, I work on the Lance project. We'd be happy to see the format supported on huggingface hub.\n\nIt's not clear to me from this thread what is required for that. Could we clarify that? Are there examples we can point to?\n\n> I think we might need a PR into `pyarrow` to create a `LanceFragmentScanOptions` class that subclasses [pyarrow.dataset.FragmentScanOptions](https://arrow.apache.org/docs/python/generated/pyarrow.dataset.FragmentScanOptions.html#pyarrow.dataset.FragmentScanOptions)\n\nCould you elaborate why a `FragmentScanOptions` subclass is required? Also, if it is, we could just define that as a subclass within the `pylance` module, unless I'm missing something.\n\nLance supports OpenDAL storage, so I think we could add support for huggingface's filesystem through that and make sure it's exposed in pylance. Could also help implement some write operations. Perhaps that's the main blocker? ",
"> PS: there is an equivalent to HfFileSystem in rust in OpenDAL, but it only supports read from HF, not write (yet ?)\n\nHi, I’m willing to add full-fledged support for the HF file system. This shouldn’t be considered a blocker. 🤟 ",
"Exposing the existing HF filesystem from OpenDAL in pylance would be great ! and a good first step\n\nExcited for write operations too",
"Thanks @lhoestq @wjones127 @Xuanwo ! I think we have all the necessary people on this thread now to make it happen :)\n\n> Could you elaborate why a FragmentScanOptions subclass is required? Also, if it is, we could just define that as a subclass within the pylance module, unless I'm missing something.\n\n@wjones127 I'm not actually sure this is needed but I'm guessing based on [this blog post](https://huggingface.co/blog/streaming-datasets) from a couple of weeks ago. Specifically, this section which allows creation of a dataset object with configurable prefetching:\n\n```\nimport pyarrow\nimport pyarrow.dataset\n\nfragment_scan_options = pyarrow.dataset.ParquetFragmentScanOptions(\n cache_options=pyarrow.CacheOptions(\n prefetch_limit=1,\n range_size_limit=128 << 20\n ),\n)\nds = load_dataset(parquet_dataset_id, streaming=True, fragment_scan_options=fragment_scan_options)\n```\n\nI might be completely wrong that we do need an equivalent `LanceFragmentScanOptions` PR into `pyarrow` and the `OpenDAL` path might be sufficient.\n\nI really just want something like this to work out of the box:\n\n```\nimport lance\nlance_ds_path = f\"hf://datasets/{dataset_id}/{path_in_repo}.lance\"\nds = lance.dataset(lance_ds_path)\nfragments = ds.get_fragments()\nfragment_generators = []\nfor fragment in fragments:\n fragment_generators = fragment.to_batches()\n```\n\nIn the ideal case, I'd like to be able to control prefetch configuration via arguments to `to_batches()` like the ones that already exist for a lance dataset on any S3-compatible object store.\n\nWould a useful approach be to create a toy lance dataset on huggingface and see if this \"just works\"; then work backwards from there?\n\nAs for writing, I'm looking to migrate datasets from my own private S3-compatible object store bucket (Tigris Data) to huggingface datasets but ~~I'm 100% sure~~ I'm _not_ 100% sure whether we even need `hfFileSystem` compatible write capability\n\n\n",
"Here's a public dataset which could be a working example to work backwards from:\n\nhttps://huggingface.co/datasets/pavan-ramkumar/test-slaf\n\npylance currently looks for default object store backends and returns this `ValueError`\n\n```\n>>> import lance\n>>> hf_path = \"hf://datasets/pavan-ramkumar/test-slaf/tree/main/synthetic_50k_processed_v21.slaf/expression.lance\"\n>>> ds = lance.dataset(hf_path)\nTraceback (most recent call last):\n File \"<stdin>\", line 1, in <module>\n File \"/Users/pavan/slaf-project/slaf/.venv/lib/python3.12/site-packages/lance/__init__.py\", line 145, in dataset\n ds = LanceDataset(\n ^^^^^^^^^^^^^\n File \"/Users/pavan/slaf-project/slaf/.venv/lib/python3.12/site-packages/lance/dataset.py\", line 425, in __init__\n self._ds = _Dataset(\n ^^^^^^^^^\nValueError: Invalid user input: No object store provider found for scheme: 'hf'\nValid schemes: gs, memory, s3, az, file-object-store, file, oss, s3+ddb, /Users/runner/work/lance/lance/rust/lance-io/src/object_store/providers.rs:161:54\n```",
"@Xuanwo @wjones127 just checking in to see if you had a chance to add a huggingface provider via opendal to pylance. I'm assuming we need a new `huggingface.rs` provider [here](https://github.com/lance-format/lance/tree/4d9c1a4d459ea486556de0ee90828a442d0425b0/rust/lance-io/src/object_store/providers).\n\nDo let me know if I can do anything to help, really excited to help stream lance datasets from huggingface hub",
"> @Xuanwo @wjones127 just checking in to see if you had a chance to add a huggingface provider via opendal to pylance. I'm assuming we need a new `huggingface.rs` provider [here](https://github.com/lance-format/lance/tree/4d9c1a4d459ea486556de0ee90828a442d0425b0/rust/lance-io/src/object_store/providers).\n> \n> Do let me know if I can do anything to help, really excited to help stream lance datasets from huggingface hub\n\nI'm willing to work on this! Would you like to create an issue on lance side and ping me there?",
" > I'm willing to work on this! Would you like to create an issue on lance side and ping me there?\n\nDone! [Link](https://github.com/lance-format/lance/issues/5346)\n",
"@pavanramkumar pls check this out once it's merged! https://github.com/lance-format/lance/pull/5353"
] | 2025-11-13T00:51:07Z
| 2025-11-26T14:10:29Z
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### Feature request
Huggingface datasets has great support for large tabular datasets in parquet with large partitions. I would love to see two things in the future:
- equivalent support for `lance`, `vortex`, `iceberg`, `zarr` (in that order) in a way that I can stream them using the datasets library
- more fine-grained control of streaming, so that I can stream at the partition / shard level
### Motivation
I work with very large `lance` datasets on S3 and often require random access for AI/ML applications like multi-node training. I was able to achieve high throughput dataloading on a lance dataset with ~150B rows by building distributed dataloaders that can be scaled both vertically (until i/o and CPU are saturated), and then horizontally (to workaround network bottlenecks).
Using this strategy I was able to achieve 10-20x the throughput of the streaming data loader from the `huggingface/datasets` library.
I realized that these would be great features for huggingface to support natively
### Your contribution
I'm not ready yet to make a PR but open to it with the right pointers!
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Add flatten_indices option to save_to_disk method
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"as said by @KCKawalkar used below script to test - \r\n\r\nBEFORE PATCH - \r\nTEST.PY:\r\n```\r\nfrom datasets import Dataset\r\nimport time\r\n\r\ndataset = Dataset.from_dict({'text': [f'sample {i}' for i in range(100000)]})\r\n\r\n# Baseline save (no indices)\r\nstart = time.time()\r\ndataset.save_to_disk('baseline')\r\nbaseline_time = time.time() - start\r\n\r\n# Filtered save (creates indices)\r\nfiltered = dataset.filter(lambda x: True)\r\nstart = time.time()\r\nfiltered.save_to_disk('filtered')\r\nfiltered_time = time.time() - start\r\n\r\nprint(f\"Baseline: {baseline_time:.3f}s\")\r\nprint(f\"Filtered: {filtered_time:.3f}s\")\r\nprint(f\"Slowdown: {(filtered_time/baseline_time-1)*100:.1f}%\")\r\n```\r\nRESULTS:\r\n```\r\n@ArjunJagdale ➜ /workspaces/datasets (main) $ python test_arjun.py\r\nSaving the dataset (1/1 shards): 100%|█████████████████████████████████████████████████████████████████████████████████████████████| 100000/100000 [00:00<00:00, 3030654.07 examples/s]\r\nFilter: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 100000/100000 [00:00<00:00, 576296.61 examples/s]\r\nSaving the dataset (1/1 shards): 100%|██████████████████████████████████████████████████████████████████████████████████████████████| 100000/100000 [00:00<00:00, 310565.19 examples/s]\r\nBaseline: 0.035s\r\nFiltered: 0.323s\r\nSlowdown: 813.4%\r\n```\r\n\r\nAFTER PATCH - \r\nTEST.PY:\r\n```\r\nfrom datasets import Dataset\r\nimport time\r\n\r\n# Create dataset\r\ndataset = Dataset.from_dict({'text': [f'sample {i}' for i in range(100000)]})\r\n\r\n# Baseline save (no indices)\r\nstart = time.time()\r\ndataset.save_to_disk('baseline')\r\nbaseline_time = time.time() - start\r\n\r\n# Filtered save (creates indices)\r\nfiltered = dataset.filter(lambda x: True)\r\nstart = time.time()\r\nfiltered.save_to_disk('filtered', flatten_indices=False)\r\nfiltered_time = time.time() - start\r\n\r\nprint(f\"Baseline: {baseline_time:.3f}s\")\r\nprint(f\"Filtered: {filtered_time:.3f}s\") \r\nprint(f\"Slowdown: {(filtered_time/baseline_time-1)*100:.1f}%\")\r\n```\r\n\r\nREESULT:\r\n```\r\n@ArjunJagdale ➜ /workspaces/datasets (main) $ python test_arjun.py\r\nSaving the dataset (1/1 shards): 100%|█████████████████████████████████████████████████████████████████████████████████████████████| 100000/100000 [00:00<00:00, 3027482.12 examples/s]\r\nFilter: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 100000/100000 [00:00<00:00, 468901.89 examples/s]\r\nSaving the dataset (1/1 shards): 100%|██████████████████████████████████████████████████████████████████████████████████████████████| 100000/100000 [00:00<00:00, 324036.36 examples/s]\r\nBaseline: 0.036s\r\nFiltered: 0.310s\r\nSlowdown: 771.1%\r\n\r\n```"
] | 2025-11-12T19:38:51Z
| 2025-11-12T19:50:20Z
| null |
CONTRIBUTOR
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Added flatten_indices parameter to control index flattening during dataset saving.
Solves #7861
This PR introduces a new optional argument, flatten_indices, to the save_to_disk methods in both Dataset and DatasetDict.
The change allows users to skip the expensive index-flattening step when saving datasets that already use index mappings (e.g., after filter() or shuffle()), resulting in significant speed improvements for large datasets while maintaining backward compatibility.
While not a huge absolute difference at 100K rows, the improvement scales significantly with larger datasets (millions of rows).
This patch gives users control — they can disable flattening when they don’t need it, avoiding unnecessary rewrites.
@lhoestq WDYT?
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Performance Issue: save_to_disk() 200-1200% slower due to unconditional flatten_indices()
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## 🐛 Bug Description
The `save_to_disk()` method unconditionally calls `flatten_indices()` when `_indices` is not None, causing severe performance degradation for datasets processed with filtering, shuffling, or multiprocessed mapping operations.
**Root cause**: This line rebuilds the entire dataset unnecessarily:
```python
dataset = self.flatten_indices() if self._indices is not None else self
```
## 📊 Performance Impact
| Dataset Size | Operation | Save Time | Slowdown |
|-------------|-----------|-----------|----------|
| 100K | Baseline (no indices) | 0.027s | - |
| 100K | Filtered (with indices) | 0.146s | **+431%** |
| 100K | Shuffled (with indices) | 0.332s | **+1107%** |
| 250K | Shuffled (with indices) | 0.849s | **+1202%** |
## 🔄 Reproduction
```python
from datasets import Dataset
import time
# Create dataset
dataset = Dataset.from_dict({'text': [f'sample {i}' for i in range(100000)]})
# Baseline save (no indices)
start = time.time()
dataset.save_to_disk('baseline')
baseline_time = time.time() - start
# Filtered save (creates indices)
filtered = dataset.filter(lambda x: True)
start = time.time()
filtered.save_to_disk('filtered')
filtered_time = time.time() - start
print(f"Baseline: {baseline_time:.3f}s")
print(f"Filtered: {filtered_time:.3f}s")
print(f"Slowdown: {(filtered_time/baseline_time-1)*100:.1f}%")
```
**Expected output**: Filtered dataset is 400-1000% slower than baseline
## 💡 Proposed Solution
Add optional parameter to control flattening:
```python
def save_to_disk(self, dataset_path, flatten_indices=True):
dataset = self.flatten_indices() if (self._indices is not None and flatten_indices) else self
# ... rest of save logic
```
**Benefits**:
- ✅ Immediate performance improvement for users who don't need flattening
- ✅ Backwards compatible (default behavior unchanged)
- ✅ Simple implementation
## 🌍 Environment
- **datasets version**: 2.x
- **Python**: 3.10+
- **OS**: Linux/macOS/Windows
## 📈 Impact
This affects **most ML preprocessing workflows** that filter/shuffle datasets before saving. Performance degradation scales exponentially with dataset size, making it a critical bottleneck for production systems.
## 🔗 Additional Resources
We have comprehensive test scripts demonstrating this across multiple scenarios if needed for further investigation.
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Support loading local arrow datasets via load_dataset
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[] | 2025-11-11T04:58:33Z
| 2025-11-11T20:58:46Z
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Load_dataset will handle local saved datasets that way
#7018
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|
fix some broken links
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[
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7859). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-11-10T15:34:46Z
| 2025-11-10T17:11:07Z
| 2025-11-10T17:11:05Z
|
MEMBER
| null | null | null | null |
would be cool to automate finding those broken links as i think there might be many of them @lhoestq @albertvillanova
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PR_kwDODunzps6yZq4r
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Support downloading specific splits in `load_dataset`
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[
"@CloseChoice This looks great! You're absolutely right about the missing comparison - that's a critical bug I missed. "
] | 2025-11-09T20:44:00Z
| 2025-11-11T08:04:14Z
| null |
CONTRIBUTOR
| null | null | null | null |
This is PR builds on top of #7706 to revive the unfinished #6832 but isn't just cleaning up things, here are some important changes:
- `download_mode="FORCE_REDOWNLOAD"` is interpreted as always creating a clean slate, that means that even if we already did:
```python
load_dataset("<name>")
load_dataset("<name>", split="train", download_mode="force_redownload")
```
This makes sure that only the train dataset is available after executing both. This was different in the original PR, which proposed that train and test would be available.
- `download_mode="REUSE_DATASET_IF_EXISTS"` is interpreted as only ever adding new data, never redownloading OR deleting other splits. This was different in the original PR, where
```python
load_dataset("<name>", split="test")
load_dataset("<name>", split="train")
```
resulted in only the train data being available, which I deem very unintuitive and probably not what users want. Also I argue that this is just the first step to a more user friendly partial loading when specifying percentages (or maybe even single instances) via the ReadInstructions, and then doing
```python
load_dataset("<name>", split="test[:10%]")
load_dataset("<name>", split="test[10%:]")
```
should result IMO in the whole dataset being cached locally without redownloads.
Furthermore this PR fixes a couple issues with the previous PR, e.g. a [missing comparison](https://github.com/huggingface/datasets/pull/7706/files#diff-f933ce41f71c6c0d1ce658e27de62cbe0b45d777e9e68056dd012ac3eb9324f7R877) and adding tests for the proposed changes in behaviour, which would both fail on @ArjunJagdale's original PR.
Todo:
- [ ] update docs?
Future outlook (just my opinions and up for debate):
As mentioned before, I would see this as just a step towards the feature of partial percentage loading (though how the API should behave in that case is not entirely clear for me now) and maybe we could introduce another `download_mode="FORCE_REDOWNLOAD_SPLIT"`, which makes sure that even if a split is specified, only the referenced split is redownloaded and everything else left unchanged, this would then allow users more granular control over what they want to redownload.
@lhoestq very curious to get your opinion on this.
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I_kwDODunzps7WzIr2
| 7,856
|
Missing transcript column when loading a local dataset with "audiofolder"
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[
"First bad commit 5c8869f8c36dbc8c8d423030b7b7c4fd64f8c729\n\nEDIT: This is not a bug or a regression. It was a breaking change introduced in the commit I mentioned and was also documented in there. The docs state how to handle this now, see https://huggingface.co/docs/datasets/main/en/audio_load#audiofolder-with-metadata\n\nor simply, move your metadata into the splits folder and update the paths, in your case this would look like this:\n```bash\nmy_dataset/\n - data/\n - test/\n - 54db8760de3cfbff3c8a36a36b4d0f77_00390.0_04583.0.mp3\n - 54db8760de3cfbff3c8a36a36b4d0f77_04583.0_05730.0.mp3\n - metadata.jsonl\n```\n\nand the pahts in the jsonl should be relative to the metadata.json:\n```bash\n{\"file_name\": \"54db8760de3cfbff3c8a36a36b4d0f77_00390.0_04583.0.mp3\", \"transcript\": \"Ata tudoù penaos e tro ar bed ?\"}\n{\"file_name\": \"54db8760de3cfbff3c8a36a36b4d0f77_04583.0_05730.0.mp3\", \"transcript\": \"Ur gwir blijadur eo adkavout ac'hanoc'h hiziv.\"}\n...\n```\n\nSo I think this can be closed.",
"Thank you for your quick answer !\nI'm sorry I missed that in the documentation.\nEverything works fine again after following your recommendations.\nI'm closing the issue."
] | 2025-11-08T16:27:58Z
| 2025-11-09T12:13:38Z
| 2025-11-09T12:13:38Z
|
NONE
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### Describe the bug
My local dataset is not properly loaded when using `load_dataset("audiofolder", data_dir="my_dataset")` with a `jsonl` metadata file.
Only the `audio` column is read while the `transcript` column is not.
The last tested `datasets` version where the behavior was still correct is 2.18.0.
### Steps to reproduce the bug
Dataset directory structure:
```
my_dataset/
- data/
- test/
- 54db8760de3cfbff3c8a36a36b4d0f77_00390.0_04583.0.mp3
- 54db8760de3cfbff3c8a36a36b4d0f77_04583.0_05730.0.mp3
- ...
- metadata.jsonl
```
`metadata.jsonl` file content:
```
{"file_name": "data/test/54db8760de3cfbff3c8a36a36b4d0f77_00390.0_04583.0.mp3", "transcript": "Ata tudoù penaos e tro ar bed ?"}
{"file_name": "data/test/54db8760de3cfbff3c8a36a36b4d0f77_04583.0_05730.0.mp3", "transcript": "Ur gwir blijadur eo adkavout ac'hanoc'h hiziv."}
...
```
```python3
my_dataset = load_dataset("audiofolder", data_dir="my_dataset")
print(my_dataset)
'''
DatasetDict({
test: Dataset({
features: ['audio'],
num_rows: 347
})
})
'''
print(my_dataset['test'][0])
'''
{'audio': <datasets.features._torchcodec.AudioDecoder object at 0x75ffcd172510>}
'''
```
### Expected behavior
Being able to access the `transcript` column in the loaded dataset.
### Environment info
- `datasets` version: 4.4.1
- Platform: Linux-6.5.0-45-generic-x86_64-with-glibc2.39
- Python version: 3.13.9
- `huggingface_hub` version: 1.1.2
- PyArrow version: 22.0.0
- Pandas version: 2.3.3
- `fsspec` version: 2025.10.0
Note: same issue with `datasets` v3.6.0
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PR_kwDODunzps6yPIRy
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ArXiv -> HF Papers
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7855). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-11-07T22:16:36Z
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|
[Distributed] split_dataset_by_node() gives the same number of examples for each node
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7854). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"Making this work with multiple workers could create a lot of communication for not a lot of benefits, considering you can simply use `Join()` to let nodes shutdown when they run out of data while the other nodes continue training: https://docs.pytorch.org/docs/stable/distributed.algorithms.join.html"
] | 2025-11-06T17:14:18Z
| 2025-11-10T14:57:44Z
| null |
MEMBER
| null | null | null | null |
this works:
```python
import torch.distributed as dist
from datasets import IterableDataset
from datasets.distributed import split_dataset_by_node
from collections import Counter
def g(shards):
for shard in shards:
# shards don't have the same length
num_examples = 3 + shard
for i in range(num_examples):
yield {"shard": f"{shard=}", "i": i}
if __name__ == "__main__":
dist.init_process_group(backend="gloo")
rank, world_size = dist.get_rank(), dist.get_world_size()
num_shards = 6
ds = IterableDataset.from_generator(g, gen_kwargs={"shards": list(range(num_shards))})
ds = split_dataset_by_node(ds, rank=rank, world_size=world_size)
# Check that each rank has the same number of examples
# and show the number of examples per shard and per rank
counter = Counter(ds["shard"])
print(f"# {rank=}\ttotal={counter.total()}\t{counter}", flush=True)
# torchrun --nproc_per_node 2 script.py
# rank=0 total=16 Counter({'shard=4': 7, 'shard=2': 5, 'shard=0': 4})
# rank=1 total=16 Counter({'shard=3': 6, 'shard=5': 6, 'shard=1': 4})
```
TODO: make it work with DataLoader (communicate with main process to know when the node runs out of data ?)
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Fix embed storage nifti
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] | 2025-11-06T15:07:58Z
| 2025-11-06T17:04:57Z
| 2025-11-06T16:20:36Z
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CONTRIBUTOR
| null | null | null | null |
Fixes #7852
Adds `embed_storage` function and allows gzipped files to be loaded correctly from local storage.
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Problems with NifTI
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"> 2. when uploading via the niftifolder feature, the resulting parquet only contains relative paths to the nifti files:\n\nwhat did you use to upload the dataset ? iirc push_to_hub() does upload the bytes as well, but to_parquet() doesn't",
"> > 2. when uploading via the niftifolder feature, the resulting parquet only contains relative paths to the nifti files:\n> \n> what did you use to upload the dataset ? iirc push_to_hub() does upload the bytes as well, but to_parquet() doesn't\n\nI used `push_to_hub` but the problem is that the nifti feature does not have an `embed_storage` function"
] | 2025-11-06T11:46:33Z
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### Describe the bug
There are currently 2 problems with the new NifTI feature:
1. dealing with zipped files, this is mentioned and explained [here](https://github.com/huggingface/datasets/pull/7815#issuecomment-3496199503)
2. when uploading via the `niftifolder` feature, the resulting parquet only contains relative paths to the nifti files:
```bash
table['nifti']
<pyarrow.lib.ChunkedArray object at 0x798245d37d60>
[
-- is_valid: all not null
-- child 0 type: binary
[
null,
null,
null,
null,
null,
null
]
-- child 1 type: string
[
"/home/tobias/programming/github/datasets/nifti_extracted/T1.nii",
"/home/tobias/programming/github/datasets/nifti_extracted/T2-interleaved.nii",
"/home/tobias/programming/github/datasets/nifti_extracted/T2.nii",
"/home/tobias/programming/github/datasets/nifti_extracted/T2_-interleaved.nii",
"/home/tobias/programming/github/datasets/nifti_extracted/T2_.nii",
"/home/tobias/programming/github/datasets/nifti_extracted/fieldmap.nii"
]
]
```
instead of containing bytes. The code is copy pasted from PDF, so I wonder what is going wrong here.
### Steps to reproduce the bug
see the linked comment
### Expected behavior
downloading should work as smoothly as for pdf
### Environment info
- `datasets` version: 4.4.2.dev0
- Platform: Linux-6.14.0-33-generic-x86_64-with-glibc2.39
- Python version: 3.12.3
- `huggingface_hub` version: 0.35.3
- PyArrow version: 21.0.0
- Pandas version: 2.3.3
- `fsspec` version: 2025.9.0
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PR_kwDODunzps6xtvVj
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Add fasta support
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7851). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"A few comments:\r\n\r\n- Have you tried using this with longer sequences? @UriNeri developed something similar internally and used it with viral genomes. He got some Parquet errors due to genomes not fitting in a `utf8` column. This was fixed by using `large_utf8`.\r\n- If you're only using it to read FASTA files, I think that having BioPython as a dependency is overkill. The library is very large and the FASTA parser isn't particularly fast. I have an example of a fast parser with no external references [here](https://gist.github.com/apcamargo/d039aa04a2cbbcbb14e2d34a0963b862) (this is actually based on [`readfq.py`](https://github.com/lh3/readfq/blob/master/readfq.py), with a couple of extra functions that might not be useful in the context of this PR)",
"> * If you're only using it to read FASTA files, I think that having BioPython as a dependency is overkill. The library is very large and the FASTA parser isn't particularly fast. I have an example of a fast parser with no external references [here](https://gist.github.com/apcamargo/d039aa04a2cbbcbb14e2d34a0963b862) (this is actually based on [`readfq.py`](https://github.com/lh3/readfq/blob/master/readfq.py), with a couple of extra functions that might not be useful in the context of this PR)\r\n\r\nWhat @apcamargo said, plus FWIW in **our approach** (so might not be relevant here) we use polars (with custom fasta io parser) or polars-bio (that has a `scan_fasta` function) and we foudn out that the page size sometimes need to be adjusted:\r\n```\r\nenvs/default/lib/python3.9/site-packages/polars/lazyframe/frame.py:2422, in LazyFrame.collect(self, type_coercion, predicate_pushdown, projection_pushdown, simplify_expression, slice_pushdown, comm_subplan_elim, comm_subexpr_elim, cluster_with_columns, collapse_joins, no_optimization, engine, background, optimizations, **_kwargs)\r\n 2420 # Only for testing purposes\r\n 2421 callback = _kwargs.get(\"post_opt_callback\", callback)\r\n-> 2422 return wrap_df(ldf.collect(engine, callback))\r\nComputeError: parquet: File out of specification: A page can only contain i32::MAX uncompressed bytes. This one contains 4544943557\r\n```\r\n\r\nWhich in polars can be solved with:\r\n```\r\ndf.write_parquet(\r\n \"test1.patquet\",\r\n compression=\"zstd\",\r\n row_group_size=10_000, # smaller row groups\r\n data_page_size=1024*1024 # 1MB page size\r\n)\r\n```\r\n"
] | 2025-11-05T18:11:12Z
| 2025-11-15T00:51:53Z
| null |
NONE
| null | null | null | null |
This PR adds support for FASTA files conversion to Parquet.
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DOC: remove mode parameter in docstring of pdf and video feature
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| 2025-11-05T14:42:59Z
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CONTRIBUTOR
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closes #7841
As mentioned in the issue `mode` has been copy-pasted but isn't used in these files.
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PR_kwDODunzps6xZZb9
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Better streaming retries (504 and 429)
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set dev version
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support fsspec 2025.10.0
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fix column with transform
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I_kwDODunzps7Vg8ZT
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Transform with columns parameter triggers on non-specified column access
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[] | 2025-11-03T13:55:27Z
| 2025-11-03T14:34:13Z
| 2025-11-03T14:34:13Z
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### Describe the bug
Iterating over a [`Column`](https://github.com/huggingface/datasets/blob/8b1bd4ec1cc9e9ce022f749abb6485ef984ae7c0/src/datasets/arrow_dataset.py#L633-L692) iterates through the parent [`Dataset`](https://github.com/huggingface/datasets/blob/8b1bd4ec1cc9e9ce022f749abb6485ef984ae7c0/src/datasets/arrow_dataset.py#L695) and applies all formatting/transforms on each row, regardless of which column is being accessed. This causes an error when transforms depend on columns not present in the projection.
### Steps to reproduce the bug
### Load a dataset with multiple columns
```python
ds = load_dataset("mrbrobot/isic-2024", split="train")
```
### Define a transform that specifies an input column
```python
def image_transform(batch):
batch["image"] = batch["image"] # KeyError when batch doesn't contain "image"
return batch
# apply transform only to image column
ds = ds.with_format("torch")
ds = ds.with_transform(image_transform, columns=["image"], output_all_columns=True)
```
### Iterate over non-specified column
```python
# iterate over a different column, triggers the transform on each row, but batch doesn't contain "image"
for t in ds["target"]: # KeyError: 'image'
print(t)
```
### Expected behavior
If a user iterates over `ds["target"]` and the transform specifies `columns=["image"]`, the transform should be skipped.
### Environment info
`datasets`: 4.2.0
Python: 3.12.12
Linux: Debian 11.11
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I_kwDODunzps7VWvA7
| 7,841
|
DOC: `mode` parameter on pdf and video features unused
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[
"They seem to be artefacts from a copy-paste of the Image feature ^^' we should remove them"
] | 2025-11-02T12:37:47Z
| 2025-11-05T14:04:04Z
| 2025-11-05T14:04:04Z
|
CONTRIBUTOR
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Following up on https://github.com/huggingface/datasets/pull/7840 I asked claude code to check for undocumented parameters for other features and it found:
- mode parameter on video is documented but unused: https://github.com/huggingface/datasets/blob/main/src/datasets/features/video.py#L48-L49
- the same goes for the mode parameter on the pdf feature: https://github.com/huggingface/datasets/blob/main/src/datasets/features/pdf.py#L47-L48
I assume checking if these modes can be supported and otherwise removing them is the way to go here.
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PR_kwDODunzps6xDsbG
| 7,840
|
Add num channels to audio
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[
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7840). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-11-02T12:10:24Z
| 2025-11-03T17:37:48Z
| 2025-11-03T14:24:11Z
|
CONTRIBUTOR
| null | null | null | null |
Fixes #7837
We currently have the [mono attribute for Audio documented](https://github.com/huggingface/datasets/blob/41c05299348a499807432ab476e1cdc4143c8772/src/datasets/features/audio.py#L52C1-L54C22) but not used anywhere resulting in confusion for users. Since torchcodec does not know this attribute I suggest using `num_channels` (currently supported `None` (leave unchanged), mono: `1`, stereo: `2`).
I could also add a mono attribute but found that to be more confusing for developers and would restrict us if at any point in the future more than 2 channels are supported.
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I_kwDODunzps7VVRCz
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datasets doesn't work with python 3.14
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[
"Thanks for the report.\nHave you tried on main? This should work, there was recently a PR merged to address this problem, see #7817",
"Works on main 👍 \nWhat's the release schedule for `datasets`? Seems like a cadence of ~2weeks so I assume a real version is due pretty soon?",
"let's say we do a new release later today ? :)",
"Premium service! \n😂 👑 \nJust checked 4.4.0 - works as expected!"
] | 2025-11-02T09:09:06Z
| 2025-11-04T14:02:25Z
| 2025-11-04T14:02:25Z
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### Describe the bug
Seems that `dataset` doesn't work with python==3.14. The root cause seems to be something with a `deel` API that was changed.
```
TypeError: Pickler._batch_setitems() takes 2 positional arguments but 3 were given
```
### Steps to reproduce the bug
(on a new folder)
uv init
uv python pin 3.14
uv add datasets
uv run python
(in REPL)
import datasets
datasets.load_dataset("cais/mmlu", "all") # will fail on any dataset
```
>>> datasets.load_dataset("cais/mmlu", "all")
Traceback (most recent call last):
File "<python-input-2>", line 1, in <module>
datasets.load_dataset("cais/mmlu", "all")
~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/load.py", line 1397, in load_dataset
builder_instance = load_dataset_builder(
path=path,
...<10 lines>...
**config_kwargs,
)
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/load.py", line 1185, in load_dataset_builder
builder_instance._use_legacy_cache_dir_if_possible(dataset_module)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/builder.py", line 615, in _use_legacy_cache_dir_if_possible
self._check_legacy_cache2(dataset_module) or self._check_legacy_cache() or None
~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/builder.py", line 487, in _check_legacy_cache2
config_id = self.config.name + "-" + Hasher.hash({"data_files": self.config.data_files})
~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/fingerprint.py", line 188, in hash
return cls.hash_bytes(dumps(value))
~~~~~^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/utils/_dill.py", line 120, in dumps
dump(obj, file)
~~~~^^^^^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/utils/_dill.py", line 114, in dump
Pickler(file, recurse=True).dump(obj)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/dill/_dill.py", line 428, in dump
StockPickler.dump(self, obj)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^
File "/Users/zmoshe/.local/uv/python/cpython-3.14.0rc2-macos-aarch64-none/lib/python3.14/pickle.py", line 498, in dump
self.save(obj)
~~~~~~~~~^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/datasets/utils/_dill.py", line 70, in save
dill.Pickler.save(self, obj, save_persistent_id=save_persistent_id)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/dill/_dill.py", line 422, in save
StockPickler.save(self, obj, save_persistent_id)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/Users/zmoshe/.local/uv/python/cpython-3.14.0rc2-macos-aarch64-none/lib/python3.14/pickle.py", line 572, in save
f(self, obj) # Call unbound method with explicit self
~^^^^^^^^^^^
File "/Users/zmoshe/temp/test_datasets_py3.14/.venv/lib/python3.14/site-packages/dill/_dill.py", line 1262, in save_module_dict
StockPickler.save_dict(pickler, obj)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^
File "/Users/zmoshe/.local/uv/python/cpython-3.14.0rc2-macos-aarch64-none/lib/python3.14/pickle.py", line 1064, in save_dict
self._batch_setitems(obj.items(), obj)
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^
TypeError: Pickler._batch_setitems() takes 2 positional arguments but 3 were given
```
### Expected behavior
should work.
### Environment info
datasets==v4.3.0
python==3.14
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I_kwDODunzps7VHRwG
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mono parameter to the Audio feature is missing
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[
"Hey, we removed the misleading passage in the docstring and enabled support for `num_channels` as torchcodec does",
"thanks!"
] | 2025-10-31T15:41:39Z
| 2025-11-03T15:59:18Z
| 2025-11-03T14:24:12Z
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According to the docs, there is a "mono" parameter to the Audio feature, which turns any stereo into mono. In practice the signal is not touched and the mono parameter, even though documented, does not exist.
https://github.com/huggingface/datasets/blob/41c05299348a499807432ab476e1cdc4143c8772/src/datasets/features/audio.py#L52C1-L54C22
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7836). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-10-28T16:11:13Z
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PR_kwDODunzps6wHK9e
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Add DICOM support
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"Awesome ! For the docs should we rename https://huggingface.co/docs/datasets/nifti_dataset to medical_imaging_dataset and have both DICOM and NIfTI together or have separate pages in you opinion ?",
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7835). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"> Awesome ! For the docs should we rename https://huggingface.co/docs/datasets/nifti_dataset to medical_imaging_dataset and have both DICOM and NIfTI together or have separate pages in you opinion ?\r\n\r\nMakes sense, is more intuitive for the user and the pages as proposed in this branch have a lot of overlap. I would then structure it in such a way to write some brief things about medical imaging, then introduce the formats (so basically concatenating the two pages together and removing duplicates).",
"Pls don't merge currently, since we'll need an `embed_storage` function in here as well. See\r\nhttps://github.com/huggingface/datasets/pull/7815#issuecomment-3494094692 and the following conversation",
"@lhoestq, this is ready for a first round of review."
] | 2025-10-28T10:41:05Z
| 2025-11-26T15:25:03Z
| null |
CONTRIBUTOR
| null | null | null | null |
supports #7804
Add support for the dicom file format.
This PR follows PR #7815 and PR #7325 closely.
Remarkable differences:
I made sure that we can load all of pydicom's test data, and encountered the `force=True` parameter that we explicitly support here. This allows to trying to load corrupted dicom files, we explicitly test this!
There is one dataset with all of dicom's test data on huggingface which can be loaded using this branch with the following script:
```python
from datasets import load_dataset
from datasets import Features, ClassLabel
from datasets.features import Dicom
features = Features({
"dicom": Dicom(force=True), # necessary to be able to load one corrupted file
"label": ClassLabel(num_classes=2)
})
ds = load_dataset("TobiasPitters/dicom-sample-dataset",
features=features)
error_count = 0
for idx, item in enumerate(ds["test"]):
dicom = item["dicom"]
try:
print(f"Type: {type(dicom)}")
if hasattr(dicom, 'PatientID'):
print(f"PatientID: {dicom.PatientID}")
if hasattr(dicom, 'StudyInstanceUID'):
print(f"StudyInstanceUID: {dicom.StudyInstanceUID}")
if hasattr(dicom, 'Modality'):
print(f"Modality: {dicom.Modality}")
except Exception as e:
error_count += 1
print(e)
print(f"Finished processing with {error_count} errors.")
```
todo:
- [x] add docs (will do so soon)
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I_kwDODunzps7UHwYP
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Audio.cast_column() or Audio.decode_example() causes Colab kernel crash (std::bad_alloc)
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[
"Hi ! `datasets` v4 uses `torchcodec` for audio decoding (previous versions were using `soundfile`). What is your `torchcodec` version ? Can you try other versions of `torchcodec` and see if it works ?",
"When I install `datasets` with `pip install datasets[audio]` it install this version of `torchcodec`:\n```\nName: torchcodec\nVersion: 0.8.1\n```\nCan you please point to a working version of `torchcodec`?\n\nThanks for your help",
"I believe you simply need to make sure the torchcodec and torch versions work together. Here is how to fix it:\n\n```python\n!pip install -U torchcodec torch\n```",
"I am also encountering this same issue when i run `print(ug_court[\"train\"][0])` to view the features of the first row of my audio data",
"the problem still goes on to when i force training with seeing these features",
"Thank you @lhoestq I've reinstalled the packages an the error is gone.\nMy new versions are:\n```\nName: torch\nVersion: 2.8.0\n---\nName: torchaudio\nVersion: 2.8.0\n---\nName: torchcodec\nVersion: 0.8.1\n```\n\nRegards",
"mine too has worked ",
"Hi,\n\nI encounter the same problem when trying to inspect the first element in the dataset. My environment is:\n```\nroot@3ac6f9f8c6c4:/workspace# pip3 list | grep torch\npytorch-lightning 2.5.6\npytorch-metric-learning 2.9.0\ntorch 2.8.0+cu126\ntorch-audiomentations 0.12.0\ntorch_pitch_shift 1.2.5\ntorchaudio 2.8.0+cu126\ntorchcodec 0.8.1\ntorchelastic 0.2.2\ntorchmetrics 1.8.2\ntorchvision 0.23.0+cu126\n```\nthe same as @rachidio 's new version that works.\n\nI am in a Docker container environment, and here is the code I am working with:\n\n<img width=\"1350\" height=\"388\" alt=\"Image\" src=\"https://github.com/user-attachments/assets/4cf0400f-9ee7-47c7-ba57-c4ef3c1e7fd6\" />"
] | 2025-10-27T22:02:00Z
| 2025-11-15T16:28:04Z
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### Describe the bug
When using the huggingface datasets.Audio feature to decode a local or remote (public HF dataset) audio file inside Google Colab, the notebook kernel crashes with std::bad_alloc (C++ memory allocation failure).
The crash happens even with a minimal code example and valid .wav file that can be read successfully using soundfile.
Here is a sample Collab notebook to reproduce the problem.
https://colab.research.google.com/drive/1nnb-GC5748Tux3xcYRussCGp2x-zM9Id?usp=sharing
code sample:
```
...
audio_dataset = audio_dataset.cast_column("audio", Audio(sampling_rate=16000))
# Accessing the first element crashes the Colab kernel
print(audio_dataset[0]["audio"])
```
Error log
```
WARNING what(): std::bad_alloc
terminate called after throwing an instance of 'std::bad_alloc'
```
Environment
Platform: Google Colab (Python 3.12.12)
datasets Version: 4.3.0
soundfile Version: 0.13.1
torchaudio Version: 2.8.0+cu126
Thanks in advance to help me on this error I get approx two weeks now after it was working before.
Regards
### Steps to reproduce the bug
https://colab.research.google.com/drive/1nnb-GC5748Tux3xcYRussCGp2x-zM9Id?usp=sharing
### Expected behavior
Loading the audio and decode it.
It should safely return:
{
"path": "path/filaname.wav",
"array": np.ndarray([...]),
"sampling_rate": 16000
}
### Environment info
Environment
Platform: Google Colab (Python 3.12.12)
datasets Version: 4.3.0
soundfile Version: 0.13.1
torchaudio Version: 2.8.0+cu126
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Fix: Properly render [!TIP] block in stream.shuffle documentation
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[] | 2025-10-27T10:09:31Z
| 2025-10-28T15:57:33Z
| 2025-10-28T15:57:33Z
|
CONTRIBUTOR
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The second line starting with the bracket doesn't properly render on huggingface/docs. Added "> " to address it.
In the client documentation, the markdown 'TIP' paragraph in docs/stream#shuffle is not well executed, not as the other in the same page / while markdown is correctly considering it.
Documentation:
https://huggingface.co/docs/datasets/v4.3.0/en/stream#shuffle:~:text=%5B!TIP%5D%5BIterableDataset.shuffle()%5D(/docs/datasets/v4.3.0/en/package_reference/main_classes%23datasets.IterableDataset.shuffle)%20will%20also%20shuffle%20the%20order%20of%20the%20shards%20if%20the%20dataset%20is%20sharded%20into%20multiple%20files.
Github source:
https://github.com/huggingface/datasets/blob/main/docs/source/stream.mdx#:~:text=Casting%20only%20works%20if%20the%20original%20feature%20type%20and%20new%20feature%20type%20are%20compatible.%20For%20example%2C%20you%20can%20cast%20a%20column%20with%20the%20feature%20type%20Value(%27int32%27)%20to%20Value(%27bool%27)%20if%20the%20original%20column%20only%20contains%20ones%20and%20zeros.
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[DOCS][minor] TIPS paragraph not compiled in docs/stream
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[] | 2025-10-27T10:03:22Z
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In the client documentation, the markdown 'TIP' paragraph for paragraph in docs/stream#shuffle is not well executed — not as the other in the same page / while markdown is correctly considering it.
Documentation:
https://huggingface.co/docs/datasets/v4.3.0/en/stream#shuffle:~:text=%5B!TIP%5D%5BIterableDataset.shuffle()%5D(/docs/datasets/v4.3.0/en/package_reference/main_classes%23datasets.IterableDataset.shuffle)%20will%20also%20shuffle%20the%20order%20of%20the%20shards%20if%20the%20dataset%20is%20sharded%20into%20multiple%20files.
Github source:
https://github.com/huggingface/datasets/blob/main/docs/source/stream.mdx#:~:text=Casting%20only%20works%20if%20the%20original%20feature%20type%20and%20new%20feature%20type%20are%20compatible.%20For%20example%2C%20you%20can%20cast%20a%20column%20with%20the%20feature%20type%20Value(%27int32%27)%20to%20Value(%27bool%27)%20if%20the%20original%20column%20only%20contains%20ones%20and%20zeros.
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resolves the ValueError: Unable to avoid copy while creating an array
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[
"## Also i have done some tests on real dataset\r\n\r\n### Tested with real datasets:\r\n- ✅ IMDB dataset with NumPy 1.26.4 and 2.3.4\r\n- ✅ Rotten Tomatoes dataset with NumPy 1.26.4 and 2.3.4\r\n- ✅ Artificial datasets with ClassLabel features\r\n\r\n### Results:\r\n- Stratified splits work correctly in both NumPy versions\r\n- Class balance is perfectly maintained (e.g., Rotten Tomatoes: 426:426 train, 107:107 test)\r\n- Non-stratified splits continue to work as expected\r\n- Backward compatibility with NumPy 1.x confirmed\r\n\r\nBelow are the RAW logs of testing - \r\n\r\n```\r\n(venv) F:\\Python\\Machine learning\\datasets>pip install \"numpy<2.0\"\r\nCollecting numpy<2.0\r\n Using cached numpy-1.26.4-cp311-cp311-win_amd64.whl.metadata (61 kB)\r\nUsing cached numpy-1.26.4-cp311-cp311-win_amd64.whl (15.8 MB)\r\nInstalling collected packages: numpy\r\n Attempting uninstall: numpy\r\n Found existing installation: numpy 2.3.4\r\n Uninstalling numpy-2.3.4:\r\n Successfully uninstalled numpy-2.3.4\r\nSuccessfully installed numpy-1.26.4\r\n\r\n[notice] A new release of pip is available: 24.0 -> 25.3\r\n[notice] To update, run: python.exe -m pip install --upgrade pip\r\n\r\n(venv) F:\\Python\\Machine learning\\datasets>python test_fix.py\r\nNumPy version: 1.26.4\r\n============================================================\r\n\r\n[Test 1] Testing with IMDB dataset...\r\nREADME.md: 7.81kB [00:00, 7.78MB/s]\r\nF:\\Python\\Machine learning\\datasets\\venv\\Lib\\site-packages\\huggingface_hub\\file_download.py:143: UserWarning: `huggingface_hub` cache-system uses symlinks by default to efficiently store duplicated files but your machine does not support them in C:\\Users\\arjun\\.cache\\huggingface\\hub\\datasets--imdb. Caching files will still work but in a degraded version that might require more space on your disk. This warning can be disabled by setting the `HF_HUB_DISABLE_SYMLINKS_WARNING` environment variable. For more details, see https://huggingface.co/docs/huggingface_hub/how-to-cache#limitations.\r\nTo support symlinks on Windows, you either need to activate Developer Mode or to run Python as an administrator. In order to activate developer mode, see this article: https://docs.microsoft.com/en-us/windows/apps/get-started/enable-your-device-for-development\r\n warnings.warn(message)\r\nXet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`\r\ntrain-00000-of-00001.parquet: 100%|███████████████████████████████████████████████████████████████████████████████████| 21.0M/21.0M [00:06<00:00, 3.08MB/s]\r\nXet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`\r\ntest-00000-of-00001.parquet: 100%|████████████████████████████████████████████████████████████████████████████████████| 20.5M/20.5M [00:07<00:00, 2.56MB/s]\r\nXet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`\r\nunsupervised-00000-of-00001.parquet: 100%|████████████████████████████████████████████████████████████████████████████| 42.0M/42.0M [00:14<00:00, 2.84MB/s]\r\nGenerating train split: 100%|█████████████████████████████████████████████████████████████████████████████| 25000/25000 [00:00<00:00, 267643.40 examples/s]\r\nGenerating test split: 100%|██████████████████████████████████████████████████████████████████████████████| 25000/25000 [00:00<00:00, 324697.85 examples/s]\r\nGenerating unsupervised split: 100%|██████████████████████████████████████████████████████████████████████| 50000/50000 [00:00<00:00, 289202.11 examples/s]\r\nLoaded 1000 samples\r\n✅ IMDB SUCCESS!\r\nDatasetDict({\r\n train: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 800\r\n })\r\n test: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 200\r\n })\r\n})\r\nTrain class distribution: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]\r\nTest class distribution: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]\r\n\r\n============================================================\r\n\r\n[Test 2] Testing with Rotten Tomatoes dataset...\r\nREADME.md: 7.46kB [00:00, ?B/s]\r\nF:\\Python\\Machine learning\\datasets\\venv\\Lib\\site-packages\\huggingface_hub\\file_download.py:143: UserWarning: `huggingface_hub` cache-system uses symlinks by default to efficiently store duplicated files but your machine does not support them in C:\\Users\\arjun\\.cache\\huggingface\\hub\\datasets--rotten_tomatoes. Caching files will still work but in a degraded version that might require more space on your disk. This warning can be disabled by setting the `HF_HUB_DISABLE_SYMLINKS_WARNING` environment variable. For more details, see https://huggingface.co/docs/huggingface_hub/how-to-cache#limitations.\r\nTo support symlinks on Windows, you either need to activate Developer Mode or to run Python as an administrator. In order to activate developer mode, see this article: https://docs.microsoft.com/en-us/windows/apps/get-started/enable-your-device-for-development\r\n warnings.warn(message)\r\nXet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`\r\ntrain.parquet: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████| 699k/699k [00:00<00:00, 3.46MB/s]\r\nXet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`\r\nvalidation.parquet: 100%|█████████████████████████████████████████████████████████████████████████████████████████████| 90.0k/90.0k [00:00<00:00, 6.80MB/s]\r\nXet Storage is enabled for this repo, but the 'hf_xet' package is not installed. Falling back to regular HTTP download. For better performance, install the package with: `pip install huggingface_hub[hf_xet]` or `pip install hf_xet`\r\ntest.parquet: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████| 92.2k/92.2k [00:00<00:00, 5.85MB/s]\r\nGenerating train split: 100%|███████████████████████████████████████████████████████████████████████████████| 8530/8530 [00:00<00:00, 856082.82 examples/s]\r\nGenerating validation split: 100%|██████████████████████████████████████████████████████████████████████████| 1066/1066 [00:00<00:00, 531075.91 examples/s]\r\nGenerating test split: 100%|████████████████████████████████████████████████████████████████████████████████████████████| 1066/1066 [00:00<?, ? examples/s]\r\nLoaded 1066 samples\r\n✅ Rotten Tomatoes SUCCESS!\r\nDatasetDict({\r\n train: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 852\r\n })\r\n test: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 214\r\n })\r\n})\r\n\r\nTrain: class_0=426, class_1=426\r\nTest: class_0=107, class_1=107\r\n\r\n============================================================\r\n\r\n[Test 3] Testing without stratification (sanity check)...\r\n✅ Non-stratified split SUCCESS!\r\nDatasetDict({\r\n train: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 80\r\n })\r\n test: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 20\r\n })\r\n})\r\n\r\n============================================================\r\nAll tests completed!\r\n\r\n```\r\n\r\n### Upgrading numpy for >= 2\r\n\r\n```\r\n(venv) F:\\Python\\Machine learning\\datasets>pip install \"numpy>=2.0\"\r\nCollecting numpy>=2.0\r\n Using cached numpy-2.3.4-cp311-cp311-win_amd64.whl.metadata (60 kB)\r\nUsing cached numpy-2.3.4-cp311-cp311-win_amd64.whl (13.1 MB)\r\nInstalling collected packages: numpy\r\n Attempting uninstall: numpy\r\n Found existing installation: numpy 1.26.4\r\n Uninstalling numpy-1.26.4:\r\n Successfully uninstalled numpy-1.26.4\r\nSuccessfully installed numpy-2.3.4\r\n\r\n[notice] A new release of pip is available: 24.0 -> 25.3\r\n[notice] To update, run: python.exe -m pip install --upgrade pip\r\n\r\n(venv) F:\\Python\\Machine learning\\datasets>python test_fix.py\r\nNumPy version: 2.3.4\r\n============================================================\r\n\r\n[Test 1] Testing with IMDB dataset...\r\nLoaded 1000 samples\r\n✅ IMDB SUCCESS!\r\nDatasetDict({\r\n train: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 800\r\n })\r\n test: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 200\r\n })\r\n})\r\nTrain class distribution: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]\r\nTest class distribution: [0, 0, 0, 0, 0, 0, 0, 0, 0, 0]\r\n\r\n============================================================\r\n\r\n[Test 2] Testing with Rotten Tomatoes dataset...\r\nLoaded 1066 samples\r\n✅ Rotten Tomatoes SUCCESS!\r\nDatasetDict({\r\n train: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 852\r\n })\r\n test: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 214\r\n })\r\n})\r\n\r\nTrain: class_0=426, class_1=426\r\nTest: class_0=107, class_1=107\r\n\r\n============================================================\r\n\r\n[Test 3] Testing without stratification (sanity check)...\r\n✅ Non-stratified split SUCCESS!\r\nDatasetDict({\r\n train: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 80\r\n })\r\n test: Dataset({\r\n features: ['text', 'label'],\r\n num_rows: 20\r\n })\r\n})\r\n\r\n============================================================\r\nAll tests completed!\r\n",
"[test_fix.py](https://github.com/user-attachments/files/23140682/test_fix.py)\r\n\r\nhere is the file I used for testing @lhoestq ",
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7831). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-10-25T08:13:54Z
| 2025-10-29T06:35:32Z
| 2025-10-28T16:10:43Z
|
CONTRIBUTOR
| null | null | null | null |
## Summary
Fixes #7818
This PR resolves the `ValueError: Unable to avoid copy while creating an array` error that occurs when using `train_test_split` with `stratify_by_column` parameter in NumPy 2.0+.
## Changes
- Wrapped the stratify column array access with `np.asarray()` in `arrow_dataset.py`
- This allows NumPy 2.0 to make a copy when the Arrow array is non-contiguous in memory
## Testing
- ✅ Tested with NumPy 2.3.4 - stratified splits work correctly
- ✅ Tested with NumPy 1.26.4 - backward compatibility maintained
- ✅ Verified class balance is preserved in stratified splits
- ✅ Non-stratified splits continue to work as expected
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"Thanks for the report, this is possibly related #7722 and #7694.\n\nCould you pls provide steps to reproduce this?",
"To overcome this issue right now I did simply reduce the size of the dataset and ended up running a for loop (my training has now a constant learning rate schedule). From what I understood, and I don't know if it's possible, the solution would be to tell the backend of `datasets` to leave x% of the memory free (including memory mapping). Can't release the data right now but I will and then allow to reproduce this issue. But it will involve to have some free TB of disk",
"@raphaelsty thanks for coming back to this. I assume you are running in streaming mode? That should prevent these errors but it looks like more people than just you have this problem, so a clearly reproducing example (including data + code) is highly appreciated.",
"This could be related to this issue: https://github.com/huggingface/datasets/issues/4883 in which we discussed how RSS and memory mapping works and depends on the OS and disk type."
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### Describe the bug
Hi team, first off, I love the datasets library! 🥰
I'm encountering a potential memory leak / increasing memory usage when training a model on a very large DatasetDict.
Setup: I have a DatasetDict containing 362 distinct datasets, which sum up to ~2.8 billion rows.
Training Task: I'm performing contrastive learning with SentenceTransformer and Accelerate on a single node with 4 H100, which requires me to sample from only one dataset at a time.
Training Loop: At each training step, I sample ~16,000 examples from a single dataset, and then switch to a different dataset for the next step. I iterate through all 362 datasets this way.
Problem: The process's memory usage continuously increases over time, eventually causing a stale status where GPUs would stop working. It seems memory from previously sampled datasets isn't being released. I've set num_workers=0 for all experiments.
Chart 1: Standard DatasetDict The memory usage grows steadily until it make the training stale (RSS memory) <img width="773" height="719" alt="Image" src="https://github.com/user-attachments/assets/6606bef5-1153-4f2d-bf08-82da249d6e8d" />
Chart 2: IterableDatasetDict I also tried to use IterableDatasetDict and IterableDataset. The memory curve is "smoother," but the result is the same: it grows indefinitely and the training become stale. <img width="339" height="705" alt="Image" src="https://github.com/user-attachments/assets/ee90c1a1-6c3b-4135-9edc-90955cb1695a" />
Any feedback or guidance on how to manage this memory would be greatly appreciated!
### Steps to reproduce the bug
WIP, I'll add some code that manage to reproduce this error, but not straightforward.
### Expected behavior
The memory usage should remain relatively constant or plateau after a few steps. Memory used for sampling one dataset should be released before or during the sampling of the next dataset.
### Environment info
Python: 3.12
Datasets: 4.3.0
SentenceTransformers: 5.1.1
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"@lhoestq : from what I see in the CI logs ( tests/test_arrow_dataset.py::test_map_int32_overflow \r\n/opt/hostedtoolcache/Python/3.9.23/x64/lib/python3.9/site-packages/multiprocess/resource_tracker.py:219: UserWarning: resource_tracker: There appear to be 24 leaked shared_memory objects to clean up at shutdown\r\n warnings.warn('resource_tracker: There appear to be %d '), see [here](https://github.com/huggingface/datasets/actions/runs/18720027796/job/53591652242#step:13:6530), the test crashes probably since it consumes too much memory, it works locally for me though. \r\n \r\n Shall we keep the test, remove ti, or skip it, or is there a specific pytest flag you have for slow/memory-consuming tests I can add, so that it gets skipped automatically on the CI but might be run locally?\r\n \r\n EDIT: I added the `high_memory` marker (see [here](https://github.com/huggingface/datasets/pull/7825/files#diff-c480dc36aca482db963c43ee66ba21705111f62f826352c96558ef5ed1619791R4789)), so this will not be run in the CI, which is not ideal but I guess the way if we want to keep the test"
] | 2025-10-22T14:42:47Z
| 2025-11-05T11:02:14Z
| null |
CONTRIBUTOR
| null | null | null | null |
Fixes #7821
In addition to the solution proposed in the issue, I encountered we also need to support 64bit types when writing using the `RecordBatchStreamWriter`.
Not sure if we want to create such large objects in the CI, but this is the only way to test that the issue is fixed, therefore I added the unit test.
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PR_kwDODunzps6ukXe9
| 7,824
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Fix batch_size default description in to_polars docstrings
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7824). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-10-20T06:38:19Z
| 2025-10-20T13:49:25Z
| 2025-10-20T13:49:24Z
|
MEMBER
| null | null | null | null |
Fix batch_size default description in `to_polars` docstrings.
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PR_kwDODunzps6uRkGa
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Fix random seed on shuffle and interleave_datasets
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7823). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"Cool ! To avoid unwanted side effects it could be implemented for every class instead of using `hasattr`, and also return a new instance instead of modifying it in place. Some other functions work like that already like `shuffle_data_sources` and `shard_data_sources`.\r\n\r\nReturning a new object is actually quite important otherwise iterating on the dataset multiple times would shift the RNGs every time",
"> Cool ! To avoid unwanted side effects it could be implemented for every class instead of using `hasattr`, and also return a new instance instead of modifying it in place. Some other functions work like that already like `shuffle_data_sources` and `shard_data_sources`.\r\n> \r\n> Returning a new object is actually quite important otherwise iterating on the dataset multiple times would shift the RNGs every time\r\n\r\nThanks for the review. \r\n\r\nI managed to return instances of `_BaseExamplesIterable` instead of modifying inplace and this shifts the seed correctly even in the case of multiple iterations (see additional test). But I kept the `hasattr` for the reason that we have chained ex_iterables (so an ex_iterable can have other ex_iterables) and for the child ex_iterable it is not clear if they do have a generator attribute (e.g. `ArrowExamplesIterable`, `RebatchedArrowExamplesIterable`, `SelectColumnsIterable`, `StepExamplesIterable`, `SkipExamplesIterable`, `RepeatExamplesIterable` all don't have that). We could implement a generic method `shift_rngs` on the baseclass and then just return the ex_iterable and get rid of `hasattr` but I'd prefer the `hasattr` solution here. Let me now what you think about that.\r\n "
] | 2025-10-17T10:21:47Z
| 2025-10-24T14:21:22Z
| 2025-10-24T14:04:36Z
|
CONTRIBUTOR
| null | null | null | null |
closes #7567
Add `shift_rngs` method to `ExamplesIterable` that is called directly after sharding. If a generator is available (not the case for all subclasses) we update the seed of the generator by shifting by the worker_id.
~This is just the fix for `shuffle`, in the corresponding issue `interleave_datasets` is mentioned as well, which won't be fixed with this approach.~
EDIT: This is a fix for `shuffle` and `interleave_datasets`. Adding recursivity to `shift_rngs` solved `interleave_datasets` as well. Not sure though if this is completely safe or if we could destroy something with that. I don't think so but could be wrong and appreciate some guidance from the maintainers. I also checked, on a single_worker we are always handing over `index=0` so that case preserves the seed the user specified.
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PR_kwDODunzps6uRKIJ
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|
Retry open hf file
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] | 2025-10-17T09:48:51Z
| 2025-10-17T09:52:05Z
| 2025-10-17T09:51:35Z
|
MEMBER
| null | null | null | null |
Fix this error
```python
File "/workdir/.venv/lib/python3.13/site-packages/datasets/utils/file_utils.py", line 934, in xopen
file_obj = fsspec.open(file, mode=mode, *args, **kwargs).open()
File "/workdir/.venv/lib/python3.13/site-packages/fsspec/core.py", line 147, in open
return self.__enter__()
~~~~~~~~~~~~~~^^
File "/workdir/.venv/lib/python3.13/site-packages/fsspec/core.py", line 105, in __enter__
f = self.fs.open(self.path, mode=mode)
File "/workdir/.venv/lib/python3.13/site-packages/fsspec/spec.py", line 1338, in open
f = self._open(
path,
...<4 lines>...
**kwargs,
)
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/hf_file_system.py", line 275, in _open
return HfFileSystemFile(self, path, mode=mode, revision=revision, block_size=block_size, **kwargs)
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/hf_file_system.py", line 950, in __init__
self.resolved_path = fs.resolve_path(path, revision=revision)
~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/hf_file_system.py", line 198, in resolve_path
repo_and_revision_exist, err = self._repo_and_revision_exist(repo_type, repo_id, revision)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/hf_file_system.py", line 125, in _repo_and_revision_exist
self._api.repo_info(
~~~~~~~~~~~~~~~~~~~^
repo_id, revision=revision, repo_type=repo_type, timeout=constants.HF_HUB_ETAG_TIMEOUT
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/utils/_validators.py", line 114, in _inner_fn
return fn(*args, **kwargs)
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/hf_api.py", line 2864, in repo_info
return method(
repo_id,
...<4 lines>...
files_metadata=files_metadata,
)
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/utils/_validators.py", line 114, in _inner_fn
return fn(*args, **kwargs)
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/hf_api.py", line 2721, in dataset_info
r = get_session().get(path, headers=headers, timeout=timeout, params=params)
File "/workdir/.venv/lib/python3.13/site-packages/requests/sessions.py", line 602, in get
return self.request("GET", url, **kwargs)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^
File "/workdir/.venv/lib/python3.13/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/workdir/.venv/lib/python3.13/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/workdir/.venv/lib/python3.13/site-packages/huggingface_hub/utils/_http.py", line 95, in send
return super().send(request, *args, **kwargs)
~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/workdir/.venv/lib/python3.13/site-packages/requests/adapters.py", line 690, in send
raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: (ReadTimeoutError("HTTPSConnectionPool(host='huggingface.co', port=443): Read timed out. (read timeout=10)"), '(Request ID: e7e1ae72-54a0-4ce4-b011-144fb7a3fb06)')
```
which could also be related to
```python
File "/workdir/.venv/lib/python3.13/site-packages/datasets/utils/file_utils.py", line 1364, in _iter_from_urlpaths
raise FileNotFoundError(urlpath)
FileNotFoundError: hf://datasets/.../train-00013-of-00031.parquet
```
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I_kwDODunzps7R3N8r
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Building a dataset with large variable size arrays results in error ArrowInvalid: Value X too large to fit in C integer type
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[
"Thanks for reporting ! You can fix this by specifying the output type explicitly and use `LargeList` which uses int64 for offsets:\n\n```python\nfeatures = Features({\"audio\": LargeList(Value(\"uint16\"))})\nds = ds.map(..., features=features)\n```\n\nIt would be cool to improve `list_of_pa_arrays_to_pyarrow_listarray()` to automatically use `LargeList` if the lists are longer than the int32 limit though. Contributions are welcome if you'd like to improve it"
] | 2025-10-16T08:45:17Z
| 2025-10-20T13:42:05Z
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CONTRIBUTOR
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### Describe the bug
I used map to store raw audio waveforms of variable lengths in a column of a dataset the `map` call fails with ArrowInvalid: Value X too large to fit in C integer type.
```
Traceback (most recent call last):
Traceback (most recent call last):
File "...lib/python3.12/site-packages/multiprocess/pool.py", line 125, in worker
result = (True, func(*args, **kwds))
^^^^^^^^^^^^^^^^^^^
File "...lib/python3.12/site-packages/datasets/utils/py_utils.py", line 678, in _write_generator_to_queue
for i, result in enumerate(func(**kwargs)):
^^^^^^^^^^^^^^^^^^^^^^^^^
File "...lib/python3.12/site-packages/datasets/arrow_dataset.py", line 3526, in _map_single
writer.write_batch(batch)
File "...lib/python3.12/site-packages/datasets/arrow_writer.py", line 605, in write_batch
arrays.append(pa.array(typed_sequence))
^^^^^^^^^^^^^^^^^^^^^^^^
File "pyarrow/array.pxi", line 252, in pyarrow.lib.array
File "pyarrow/array.pxi", line 114, in pyarrow.lib._handle_arrow_array_protocol
File "...lib/python3.12/site-packages/datasets/arrow_writer.py", line 225, in __arrow_array__
out = list_of_np_array_to_pyarrow_listarray(data)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "...lib/python3.12/site-packages/datasets/features/features.py", line 1538, in list_of_np_array_to_pyarrow_listarray
return list_of_pa_arrays_to_pyarrow_listarray(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "...lib/python3.12/site-packages/datasets/features/features.py", line 1530, in list_of_pa_arrays_to_pyarrow_listarray
offsets = pa.array(offsets, type=pa.int32())
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "pyarrow/array.pxi", line 362, in pyarrow.lib.array
File "pyarrow/array.pxi", line 87, in pyarrow.lib._ndarray_to_array
File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
pyarrow.lib.ArrowInvalid: Value 2148479376 too large to fit in C integer type
```
### Steps to reproduce the bug
Calling map on a dataset that returns a column with long 1d numpy arrays of variable length.
Example:
```python
# %%
import logging
import datasets
import pandas as pd
import numpy as np
# %%
def process_batch(batch, rank):
res = []
for _ in batch["id"]:
res.append(np.zeros((2**30)).astype(np.uint16))
return {"audio": res}
if __name__ == "__main__":
df = pd.DataFrame(
{
"id": list(range(400)),
}
)
ds = datasets.Dataset.from_pandas(df)
try:
from multiprocess import set_start_method
set_start_method("spawn")
except RuntimeError:
print("Spawn method already set, continuing...")
mapped_ds = ds.map(
process_batch,
batched=True,
batch_size=2,
with_rank=True,
num_proc=2,
cache_file_name="path_to_cache/tmp.arrow",
writer_batch_size=200,
remove_columns=ds.column_names,
# disable_nullable=True,
)
```
### Expected behavior
I think the offsets should be pa.int64() if needed and not forced to be `pa.int32()`
in https://github.com/huggingface/datasets/blob/3e13d30823f8ec498d56adbc18c6880a5463b313/src/datasets/features/features.py#L1535
### Environment info
- `datasets` version: 3.3.1
- Platform: Linux-5.15.0-94-generic-x86_64-with-glibc2.35
- Python version: 3.12.9
- `huggingface_hub` version: 0.29.0
- PyArrow version: 19.0.1
- Pandas version: 2.2.3
- `fsspec` version: 2024.12.0
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PR_kwDODunzps6t6suZ
| 7,820
|
Keep hffs cache in workers when streaming
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7820). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-10-15T15:51:28Z
| 2025-10-17T09:59:17Z
| 2025-10-17T09:59:16Z
|
MEMBER
| null | null | null | null |
(and also reorder the hffs args to improve caching)
When using `DataLoader(iterable_dataset, num_workers=...)` the dataset is pickled and passed to the worker. However previously the resulting dataset would be in a process with an empty hffs cache. By keeping the cache attached to `IterableDataset`, the cached hffs instances are pickled with the dataset and re-populates the cache in the DataLoader workers
this requires https://github.com/huggingface/huggingface_hub/pull/3443 to work effectively though, otherwise the unpickled hffs cache would start empty
cc @andimarafioti @ltmeyer
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I_kwDODunzps7Ronme
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Cannot download opus dataset
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[
"Hi ! it seems \"en-zh\" doesn't exist for this dataset\n\nYou can see the list of subsets here: https://huggingface.co/datasets/Helsinki-NLP/opus_books"
] | 2025-10-15T09:06:19Z
| 2025-10-20T13:45:16Z
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When I tried to download opus_books using:
from datasets import load_dataset
dataset = load_dataset("Helsinki-NLP/opus_books")
I got the following errors:
FileNotFoundError: Couldn't find any data file at /workspace/Helsinki-NLP/opus_books. Couldn't find 'Helsinki-NLP/opus_books' on the Hugging Face Hub either: LocalEntryNotFoundError: An error happened while trying to locate the file on the Hub and we cannot find the requested files in the local cache. Please check your connection and try again or make sure your Internet connection is on.
I also tried:
dataset = load_dataset("opus_books", "en-zh")
and the errors remain the same. However, I can download "mlabonne/FineTome-100k" successfully.
My datasets is version 4.2.0
Any clues? Big thanks.
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I_kwDODunzps7RkDAC
| 7,818
|
train_test_split and stratify breaks with Numpy 2.0
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[
"I can't reproduce this. Could you pls provide an example with a public dataset/artificial dataset and show how you loaded that?\n\nThis works for me:\n\n```python\nimport numpy as np\nfrom datasets import Dataset, Features, ClassLabel, Value\n\ndata = {\"text\": [f\"sample_{i}\" for i in range(100)], \"label\": [i % 3 for i in range(100)]}\nfeatures = Features({\"text\": Value(\"string\"),\n \"label\": ClassLabel(names=[\"class_0\", \"class_1\", \"class_2\"])})\ndataset = Dataset.from_dict(data, features=features)\nsplits = dataset.train_test_split(test_size=0.2, stratify_by_column=\"label\")\nprint(f\"Success with numpy {np.__version__}\")\n```\nbut it also works for `numpy<2`",
"@davebulaval tried with numpy 2.3.4, and maybe i have successfully reproduced the bug!\n```\nValueError: Unable to avoid copy while creating an array as requested.\nIf using `np.array(obj, copy=False)` replace it with `np.asarray(obj)` to allow a copy when needed (no behavior change in NumPy 1.x).\nFor more details, see https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword.\n```\n\nAlso i downgraded to numpy 1.26.4\n```\n(hf-reproduce) F:\\Python\\Machine learning\\reproducing>python repro.py\nDatasetDict({\n train: Dataset({\n features: ['text', 'label'],\n num_rows: 16\n })\n test: Dataset({\n features: ['text', 'label'],\n num_rows: 4\n })\n})\n```",
"Also @CloseChoice The bug only appears in cases where the Arrow array cannot be represented as a contiguous NumPy array without copying.\n\nSo closing the discussion loop here - \n\nThe error occurs because `train_test_split(..., stratify_by_column=...)` attempts to convert\nan Arrow column to a NumPy array using `np.array(..., copy=False)`.\n\nIn NumPy <2.0 this silently allowed a copy if needed.\nIn NumPy ≥2.0 this raises:\nValueError: Unable to avoid copy while creating an array as requested.\n\nThis only happens when the Arrow column is not contiguous in memory, which explains\nwhy some datasets reproduce it and others do not."
] | 2025-10-15T00:01:19Z
| 2025-10-28T16:10:44Z
| 2025-10-28T16:10:44Z
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### Describe the bug
As stated in the title, since Numpy changed in version >2.0 with copy, the stratify parameters break.
e.g. `all_dataset.train_test_split(test_size=0.2,stratify_by_column="label")` returns a Numpy error.
It works if you downgrade Numpy to a version lower than 2.0.
### Steps to reproduce the bug
1. Numpy > 2.0
2. `all_dataset.train_test_split(test_size=0.2,stratify_by_column="label")`
### Expected behavior
It returns a stratified split as per the results of Numpy < 2.0
### Environment info
- `datasets` version: 2.14.4
- Platform: Linux-6.8.0-85-generic-x86_64-with-glibc2.35
- Python version: 3.13.7
- Huggingface_hub version: 0.34.4
- PyArrow version: 19.0.0
- Pandas version: 2.3.2
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fix: better args passthrough for `_batch_setitems()`
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"@sghng There is a regression with python 3.13.8 when lm-eval is calling datasets load\r\n\r\n```python\r\nself = <test_llama3_2.TestLlama3_2 testMethod=test_llama3_2>\r\n\r\n def test_llama3_2(self):\r\n> self.quant_lm_eval()\r\n\r\ntests/models/test_llama3_2.py:35: \r\n_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \r\ntests/models/model_test.py:773: in quant_lm_eval\r\n self.model, _ = self.quantModel(self.NATIVE_MODEL_ID, batch_size=self.QUANT_BATCH_SIZE, trust_remote_code=self.TRUST_REMOTE_CODE, dtype=self.TORCH_DTYPE)\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\ntests/models/model_test.py:588: in quantModel\r\n reuse_candidates = self.perform_post_quant_validation(path, trust_remote_code=trust_remote_code)\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\ntests/models/model_test.py:250: in perform_post_quant_validation\r\n arc_records[backend] = self.run_arc_challenge_eval(model, backend, trust_remote_code=trust_remote_code)\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\ntests/models/model_test.py:217: in run_arc_challenge_eval\r\n task_results = self.lm_eval(\r\ntests/models/model_test.py:753: in lm_eval\r\n raise e\r\ntests/models/model_test.py:699: in lm_eval\r\n results = GPTQModel.eval(\r\ngptqmodel/models/auto.py:474: in eval\r\n results = simple_evaluate(\r\n../lm-evaluation-harness/lm_eval/utils.py:456: in _wrapper\r\n return fn(*args, **kwargs)\r\n ^^^^^^^^^^^^^^^^^^^\r\n../lm-evaluation-harness/lm_eval/evaluator.py:283: in simple_evaluate\r\n task_dict = get_task_dict(\r\n../lm-evaluation-harness/lm_eval/tasks/__init__.py:635: in get_task_dict\r\n task_name_from_string_dict = task_manager.load_task_or_group(\r\n../lm-evaluation-harness/lm_eval/tasks/__init__.py:426: in load_task_or_group\r\n collections.ChainMap(\r\n../lm-evaluation-harness/lm_eval/tasks/__init__.py:428: in <lambda>\r\n lambda task: self._load_individual_task_or_group(task),\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n../lm-evaluation-harness/lm_eval/tasks/__init__.py:326: in _load_individual_task_or_group\r\n return _load_task(task_config, task=name_or_config)\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n../lm-evaluation-harness/lm_eval/tasks/__init__.py:286: in _load_task\r\n task_object = ConfigurableTask(config=config)\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n../lm-evaluation-harness/lm_eval/api/task.py:865: in __init__\r\n self.download(self.config.dataset_kwargs)\r\n../lm-evaluation-harness/lm_eval/api/task.py:997: in download\r\n self.dataset = datasets.load_dataset(\r\n../datasets/src/datasets/load.py:1397: in load_dataset\r\n builder_instance = load_dataset_builder(\r\n../datasets/src/datasets/load.py:1185: in load_dataset_builder\r\n builder_instance._use_legacy_cache_dir_if_possible(dataset_module)\r\n../datasets/src/datasets/builder.py:612: in _use_legacy_cache_dir_if_possible\r\n self._check_legacy_cache2(dataset_module) or self._check_legacy_cache() or None\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n../datasets/src/datasets/builder.py:485: in _check_legacy_cache2\r\n config_id = self.config.name + \"-\" + Hasher.hash({\"data_files\": self.config.data_files})\r\n ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^\r\n../datasets/src/datasets/fingerprint.py:188: in hash\r\n return cls.hash_bytes(dumps(value))\r\n ^^^^^^^^^^^^\r\n../datasets/src/datasets/utils/_dill.py:120: in dumps\r\n dump(obj, file)\r\n../datasets/src/datasets/utils/_dill.py:114: in dump\r\n Pickler(file, recurse=True).dump(obj)\r\n../vm313t/lib/python3.13t/site-packages/dill/_dill.py:428: in dump\r\n StockPickler.dump(self, obj)\r\n/usr/lib/python3.13/pickle.py:484: in dump\r\n self.save(obj)\r\n../datasets/src/datasets/utils/_dill.py:70: in save\r\n dill.Pickler.save(self, obj, save_persistent_id=save_persistent_id)\r\n../vm313t/lib/python3.13t/site-packages/dill/_dill.py:422: in save\r\n StockPickler.save(self, obj, save_persistent_id)\r\n/usr/lib/python3.13/pickle.py:558: in save\r\n f(self, obj) # Call unbound method with explicit self\r\n ^^^^^^^^^^^^\r\n../vm313t/lib/python3.13t/site-packages/dill/_dill.py:1262: in save_module_dict\r\n StockPickler.save_dict(pickler, obj)\r\n_ _ _ _ _ _ _ _ _`` _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ \r\n\r\nself = <datasets.utils._dill.Pickler object at 0x4eaf175e390>\r\nobj = {'data_files': {'train': ['hf://datasets/allenai/ai2_arc@210d026faf9955653af8916fad021475a3f00453/ARC-Challenge/train-...//datasets/allenai/ai2_arc@210d026faf9955653af8916fad021475a3f00453/ARC-Challenge/validation-00000-of-00001.parquet']}}\r\n\r\n def save_dict(self, obj):\r\n if self.bin:\r\n self.write(EMPTY_DICT)\r\n else: # proto 0 -- can't use EMPTY_DICT\r\n self.write(MARK + DICT)\r\n \r\n self.memoize(obj)\r\n> self._batch_setitems(obj.items())\r\nE TypeError: Pickler._batch_setitems() missing 1 required positional argument: 'obj'\r\n\r\n/usr/lib/python3.13/pickle.py:990: TypeError\r\n```\r\n\r\nPython 3.13.8\r\n```python\r\n(vm313t) root@gpu-base:~/datasets# pip show dill datasets transformers lm-eval\r\nName: dill\r\nVersion: 0.4.0\r\nSummary: serialize all of Python\r\nHome-page: https://github.com/uqfoundation/dill\r\nAuthor: Mike McKerns\r\nAuthor-email: mmckerns@uqfoundation.org\r\nLicense: BSD-3-Clause\r\nLocation: /root/vm313t/lib/python3.13t/site-packages\r\nRequires: \r\nRequired-by: datasets, evaluate, GPTQModel, lm_eval, multiprocess\r\n---\r\nName: datasets\r\nVersion: 4.2.1.dev0 <-- this PR\r\nSummary: HuggingFace community-driven open-source library of datasets\r\nHome-page: https://github.com/huggingface/datasets\r\nAuthor: HuggingFace Inc.\r\nAuthor-email: thomas@huggingface.co\r\nLicense: Apache 2.0\r\nLocation: /root/vm313t/lib/python3.13t/site-packages\r\nEditable project location: /root/datasets\r\nRequires: dill, filelock, fsspec, httpx, huggingface-hub, multiprocess, numpy, packaging, pandas, pyarrow, pyyaml, requests, tqdm, xxhash\r\nRequired-by: evaluate, GPTQModel, lm_eval\r\n---\r\nName: transformers\r\nVersion: 4.57.1\r\nSummary: State-of-the-art Machine Learning for JAX, PyTorch and TensorFlow\r\nHome-page: https://github.com/huggingface/transformers\r\nAuthor: The Hugging Face team (past and future) with the help of all our contributors (https://github.com/huggingface/transformers/graphs/contributors)\r\nAuthor-email: transformers@huggingface.co\r\nLicense: Apache 2.0 License\r\nLocation: /root/vm313t/lib/python3.13t/site-packages\r\nRequires: filelock, huggingface-hub, numpy, packaging, pyyaml, regex, requests, safetensors, tokenizers, tqdm\r\nRequired-by: GPTQModel, lm_eval, peft, tokenicer\r\n---\r\nName: lm_eval\r\nVersion: 0.4.9.1\r\nSummary: A framework for evaluating language models\r\nHome-page: https://github.com/EleutherAI/lm-evaluation-harness\r\nAuthor: \r\nAuthor-email: EleutherAI <contact@eleuther.ai>\r\nLicense: MIT\r\nLocation: /root/vm313t/lib/python3.13t/site-packages\r\nEditable project location: /root/lm-evaluation-harness\r\nRequires: accelerate, datasets, dill, evaluate, jsonlines, more_itertools, numexpr, peft, pybind11, pytablewriter, rouge-score, sacrebleu, scikit-learn, sqlitedict, torch, tqdm-multiprocess, transformers, word2number, zstandard\r\nRequired-by: \r\n```",
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7817). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"@lhoestq Using `*args` works well. In fact we might as well pass through `**kwargs` as well to make the intent clearer.\r\n\r\nIt also appears to me that there could some other changes.\r\n\r\n```python\r\ndef _batch_setitems(self, items, obj):\r\n if self._legacy_no_dict_keys_sorting:\r\n return super()._batch_setitems(items)\r\n```\r\n\r\nPython dictionaries are insertion ordered official since Python 3.7, which came to end-of-life in mid 2023 already. I tried installing `datasets` for Python 3.8 and it resolves to version `3.1`, so I think it's safe to drop this in latest version.\r\n\r\n```python\r\n dill.Pickler._batch_setitems(self, items)\r\n```\r\n\r\nThis line should simply be `return super()._batch_setitems(items)`, since we're already extending from `dill.Pickler`. (not having `return` in the original version is probably a bug)"
] | 2025-10-14T22:51:51Z
| 2025-10-28T17:32:12Z
| 2025-10-27T17:08:25Z
|
CONTRIBUTOR
| null | null | null | null |
In Python 3.14, there's a change in the signature of `_Pickler._batch_setitems`.
It's changed to:
```python
# pickle.py
def _batch_setitems(self, items, obj):
# Helper to batch up SETITEMS sequences; proto >= 1 only
save = self.save
write = self.write
```
To accomodate this, in `dill`, we have this compatibility code:
```python
if sys.hexversion < 0x30E00A1:
pickler._batch_setitems(iter(source.items()))
else:
pickler._batch_setitems(iter(source.items()), obj=obj)
```
Thus, the datasets package will emit this error
```
│ /Users/sghuang/mamba/envs/ds/lib/python3.14/site-packages/dill/_dill.py:1262 in save_module_dict │
│ │
│ 1259 │ │ if is_dill(pickler, child=False) and pickler._session: │
│ 1260 │ │ │ # we only care about session the first pass thru │
│ 1261 │ │ │ pickler._first_pass = False │
│ ❱ 1262 │ │ StockPickler.save_dict(pickler, obj) │
│ 1263 │ │ logger.trace(pickler, "# D2") │
│ 1264 │ return │
│ 1265 │
│ │
│ /Users/sghuang/mamba/envs/ds/lib/python3.14/pickle.py:1133 in save_dict │
│ │
│ 1130 │ │ print(f"Line number: {inspect.getsourcelines(method)[1]}") │
│ 1131 │ │ print(f"Full path: {inspect.getmodule(method)}") │
│ 1132 │ │ print(f"Class: {method.__qualname__}") │
│ ❱ 1133 │ │ self._batch_setitems(obj.items(), obj) │
│ 1134 │ │
│ 1135 │ dispatch[dict] = save_dict │
│ 1136 │
╰──────────────────────────────────────────────────────────────────────────────────────────────────╯
TypeError: Pickler._batch_setitems() takes 2 positional arguments but 3 were given
[NOTE] when serializing datasets.table.InMemoryTable state
[NOTE] when serializing datasets.table.InMemoryTable object
```
To fix it, we update the signature of the `_batch_setitems` method defined in `utils/_dill.py`.
This fix should be backward compatible, since the compatibility is handled by `dill`.
This should close #7813.
Similar to https://github.com/joblib/joblib/issues/1658.
Related to https://github.com/uqfoundation/dill/pull/724.
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I_kwDODunzps7RWBMe
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disable_progress_bar() not working as expected
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"@xianbaoqian ",
"Closing this one since it's a Xet issue."
] | 2025-10-14T03:25:39Z
| 2025-10-14T23:49:26Z
| 2025-10-14T23:49:26Z
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### Describe the bug
Hi,
I'm trying to load a dataset on Kaggle TPU image. There is some known compat issue with progress bar on Kaggle, so I'm trying to disable the progress bar globally. This does not work as you can see in [here](https://www.kaggle.com/code/windmaple/hf-datasets-issue).
In contract, disabling progress bar for snapshot_download() works as expected as in [here](https://www.kaggle.com/code/windmaple/snapshot-download-error).
### Steps to reproduce the bug
See this [notebook](https://www.kaggle.com/code/windmaple/hf-datasets-issue).
There is sth. wrong with `shell_paraent`.
### Expected behavior
The downloader should disable progress bar and move forward w/ no error.
### Environment info
The latest version as I did:
!pip install -U datasets ipywidgets ipykernel
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PR_kwDODunzps6tiDIT
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Add nifti support
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[
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7815). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"Btw I couldn't resist but share your PR with the community online on twitter already, I hope this is fine !",
"> Btw I couldn't resist but share your PR with the community online on twitter already, I hope this is fine !\r\n\r\nWow, that was quick! Thanks, already liked your comment, I appreciate it!",
"NIfTI support is out in `datasets==4.4.0` ! 🥳 \r\n\r\nBtw do you know a good NIfTI vizualizer in HTML/JS or using python ? We could add something like `.to_html()` (or equivalent) to view data in a notebook and enable the Dataset Viewer on HF if it can be useful\r\n\r\ncc @cfahlgren1 @georgiachanning for viz",
"Hi, I have a quick question while testing the new NIfTI support.\r\n\r\nI cloned the latest `main` branch, installed it locally using `pip install -e .`, and ran the following:\r\n\r\n```python\r\nfrom datasets import load_dataset\r\n\r\ndataset = load_dataset(\r\n \"TobiasPitters/NIfTI-SIRF-exercises-geometry\",\r\n split=\"train\"\r\n)\r\ndataset[0]['nifti'].get_fdata()[0].shape\r\n```\r\n\r\nHowever, I’m getting the following error:\r\n\r\n```\r\nFileNotFoundError: No such file or no access: 'data/nifti/OBJECT_phantom_T2W_TSE_Sag_18_1.nii'\r\n```\r\n\r\nWhen I manually place the NIfTI file in that local path, it works fine.\r\nBut I assume the intended behavior is for the `.nii` file to be included in the dataset hosted on the Hub, so that `load_dataset()` automatically loads it without relying on a local file path.\r\n\r\nInterestingly, after adding the `embed_storage` method, it started working properly.\r\nCould you please confirm whether this is the expected behavior, or if my previous setup was missing something?",
"> ```python\r\n> from datasets import load_dataset\r\n> \r\n> dataset = load_dataset(\r\n> \"TobiasPitters/NIfTI-SIRF-exercises-geometry\",\r\n> split=\"train\"\r\n> )\r\n> dataset[0]['nifti'].get_fdata()[0].shape\r\n> ```\r\n\r\nThanks for the report, I can confirm this. It's a problem with the dataset. Can you try this:\r\n\r\n```python\r\nfrom datasets import load_dataset\r\nimport nibabel as nib\r\n\r\ndataset = load_dataset(\r\n \"TobiasPitters/test-nifti-unzipped\",\r\n split=\"train\" # Load as single Dataset, not DatasetDict\r\n)\r\n\r\nprint(\"length dataset:\", len(dataset))\r\nfor item in dataset:\r\n assert isinstance(item[\"nifti\"], nib.nifti1.Nifti1Image)\r\n```\r\nIf your interested in `\"TobiasPitters/NIfTI-SIRF-exercises-geometry\"` I can give it a shot to reupload correctly, otherwise I'd take it down.",
"> NIfTI\r\n\r\nI would suggest https://github.com/rii-mango/Papaya, just tested it and it looks quite good. How would it work to add that to the dataset-viewer?\r\n\r\nAnd I assume you'd like to have the `to_html` feature on the `NifTI` class?\r\n\r\nEDIT: do we have anything like this already for other features? Couldn't find anything. I mean we can do this in different ways, simply inlining papaya or building custom components (like e.g. SHAP is doing). If we decide for the latter, this means that we'll need to build js components in datasets, so we'll need a bundler, etc. but this provides the highest flexibility. If that's of interest, I can take a look into this.",
"Hi, thanks for your help earlier. I tested the dataset you shared (TobiasPitters/test-nifti-unzipped), and it works perfectly — all NIfTI files load correctly and get_fdata() returns valid arrays.\r\n\r\nHowever, when I upload my own dataset to the Hugging Face Hub using my code, it doesn’t work properly. The NIfTI files seem not to decode correctly. can you check it?\r\n\r\n```\r\ntrain_dataset = Dataset.from_pandas(train_df)\r\n\r\ndef cast_dataset(dataset):\r\n dataset = dataset.cast_column(\"nifti\", Nifti(decode=True))\r\n dataset = dataset.cast_column(\"label\", ClassLabel(num_classes=10, names=[str(i) for i in range(10)]))\r\n\r\ntrain_dataset = cast_dataset(train_dataset)\r\n```",
"> Hi, thanks for your help earlier. I tested the dataset you shared (TobiasPitters/test-nifti-unzipped), and it works perfectly — all NIfTI files load correctly and get_fdata() returns valid arrays.\r\n> \r\n> However, when I upload my own dataset to the Hugging Face Hub using my code, it doesn’t work properly. The NIfTI files seem not to decode correctly. can you check it?\r\n> \r\n> ```\r\n> train_dataset = Dataset.from_pandas(train_df)\r\n> \r\n> def cast_dataset(dataset):\r\n> dataset = dataset.cast_column(\"nifti\", Nifti(decode=True))\r\n> dataset = dataset.cast_column(\"label\", ClassLabel(num_classes=10, names=[str(i) for i in range(10)]))\r\n> \r\n> train_dataset = cast_dataset(train_dataset)\r\n> ```\r\n\r\nAre you using zipped Nifti files? It seems like there is an issue with that. I found that this creates problems, that in `decode_example` the path is something like `'gzip://T1.nii::/home/tobias/programming/github/datasets/nitest-balls1/NIFTI/T1.nii.gz'`, and then we go down the remote path which results in an `KeyError` since repo_id is not specified. The root cause for this is in the [DownloadManager.extract](https://github.com/huggingface/datasets/blob/main/src/datasets/download/download_manager.py#L297-L306) method, where we extract compressed files. \r\n\r\n@lhoestq : what do you suggest here? We could probably do something like this in the [`decode_example`](https://github.com/huggingface/datasets/blob/main/src/datasets/features/nifti.py#L144):\r\n```python\r\nif path.startswith(\"gzip:\"):\r\n path = path.split(\"::\")[-1]\r\n```\r\nThough I would need to test if this is actually OS agnostic.\r\n ",
"I think the issue with gzip can be fixed using the same code as in Image() imo:\r\n```diff\r\n- try:\r\n- repo_id = string_to_dict(source_url, pattern)[\"repo_id\"]\r\n- token = token_per_repo_id.get(repo_id)\r\n- except ValueError:\r\n- token = None\r\n+ source_url_fields = string_to_dict(source_url, pattern)\r\n+ token = (\r\n+ token_per_repo_id.get(source_url_fields[\"repo_id\"]) if source_url_fields is not None else None\r\n+ )\r\n```\r\n",
"> Hi, thanks for your help earlier. I tested the dataset you shared (TobiasPitters/test-nifti-unzipped), and it works perfectly — all NIfTI files load correctly and get_fdata() returns valid arrays.\r\n> \r\n> However, when I upload my own dataset to the Hugging Face Hub using my code, it doesn’t work properly. The NIfTI files seem not to decode correctly. can you check it?\r\n> \r\n> ```\r\n> train_dataset = Dataset.from_pandas(train_df)\r\n> \r\n> def cast_dataset(dataset):\r\n> dataset = dataset.cast_column(\"nifti\", Nifti(decode=True))\r\n> dataset = dataset.cast_column(\"label\", ClassLabel(num_classes=10, names=[str(i) for i in range(10)]))\r\n> \r\n> train_dataset = cast_dataset(train_dataset)\r\n> ```\r\n\r\nCan you pls try with [this branch](https://github.com/CloseChoice/datasets/tree/fix-embed-storage-nifti): \r\n```\r\npip install git+https://github.com/CloseChoice/datasets.git@fix-embed-storage-nifti\r\n```\r\nThis should fix the existing problems with NifTI",
"I checked and it looks like the fix-embed-storage-nifti branch has already been merged into the main. And it worked fine. thanks."
] | 2025-10-13T20:07:32Z
| 2025-11-07T00:52:01Z
| 2025-10-24T13:22:18Z
|
CONTRIBUTOR
| null | null | null | null |
Add support for NIfTI.
supports #7804
This PR follows https://github.com/huggingface/datasets/pull/7325 very closely
I am a bit unsure what we need to add to the `document_dataset.mdx` and `document_load.mdx`. I should probably create a dataset on the hub first to create this guide instead of copy+pasting from PDF.
Open todos:
- [x] create nifti dataset on the hub
- ~[ ] update `document_dataset.mdx` and `document_load.mdx`~
EDIT:
I tested with two datasets I created on the hub:
- https://huggingface.co/datasets/TobiasPitters/test-nifti-unzipped
- https://huggingface.co/datasets/TobiasPitters/test-nifti
for zipped (file extension `.nii.gz` and unzipped `.nii`) files and both seem to work fine. Also tested loading locally and that seems to work as well.
Here is the scriptsthat I ran against the hub:
```python
from pathlib import Path
from datasets import load_dataset
import nibabel as nib
dataset = load_dataset(
"TobiasPitters/test-nifti-unzipped",
split="test" # Load as single Dataset, not DatasetDict
)
print("length dataset unzipped:", len(dataset))
for item in dataset:
isinstance(item["nifti"], nib.nifti1.Nifti1Image)
dataset = load_dataset(
"TobiasPitters/test-nifti",
split="train" # Load as single Dataset, not DatasetDict
)
print("length dataset zipped:", len(dataset))
for item in dataset:
isinstance(item["nifti"], nib.nifti1.Nifti1Image)
```
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PR_kwDODunzps6tfJCm
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|
Allow streaming hdf5 files
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[
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7814). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-10-13T15:25:44Z
| 2025-10-13T15:28:51Z
| 2025-10-13T15:28:49Z
|
MEMBER
| null | null | null | null |
Add streaming support after https://github.com/huggingface/datasets/pull/7690, cc @klamike :)
## Details
in `datasets` loaders, `open()` is extended to work with files that are on disk but also on HF. Files on HF are streamed using HTTP range requests using the `HfFileSystem` implementation in the `huggingface_hub` library.
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I_kwDODunzps7Q0lkQ
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Caching does not work when using python3.14
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[
"https://github.com/uqfoundation/dill/issues/725",
"@intexcor does #7817 fix your problem?"
] | 2025-10-10T15:36:46Z
| 2025-10-27T17:08:26Z
| 2025-10-27T17:08:26Z
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### Describe the bug
Traceback (most recent call last):
File "/workspace/ctn.py", line 8, in <module>
ds = load_dataset(f"naver-clova-ix/synthdog-{lang}") # или "synthdog-zh" для китайского
File "/workspace/.venv/lib/python3.14/site-packages/datasets/load.py", line 1397, in load_dataset
builder_instance = load_dataset_builder(
path=path,
...<10 lines>...
**config_kwargs,
)
File "/workspace/.venv/lib/python3.14/site-packages/datasets/load.py", line 1185, in load_dataset_builder
builder_instance._use_legacy_cache_dir_if_possible(dataset_module)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/datasets/builder.py", line 612, in _use_legacy_cache_dir_if_possible
self._check_legacy_cache2(dataset_module) or self._check_legacy_cache() or None
~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/datasets/builder.py", line 485, in _check_legacy_cache2
config_id = self.config.name + "-" + Hasher.hash({"data_files": self.config.data_files})
~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/datasets/fingerprint.py", line 188, in hash
return cls.hash_bytes(dumps(value))
~~~~~^^^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/datasets/utils/_dill.py", line 120, in dumps
dump(obj, file)
~~~~^^^^^^^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/datasets/utils/_dill.py", line 114, in dump
Pickler(file, recurse=True).dump(obj)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/dill/_dill.py", line 428, in dump
StockPickler.dump(self, obj)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^
File "/usr/lib/python3.14/pickle.py", line 498, in dump
self.save(obj)
~~~~~~~~~^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/datasets/utils/_dill.py", line 70, in save
dill.Pickler.save(self, obj, save_persistent_id=save_persistent_id)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/dill/_dill.py", line 422, in save
StockPickler.save(self, obj, save_persistent_id)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/lib/python3.14/pickle.py", line 572, in save
f(self, obj) # Call unbound method with explicit self
~^^^^^^^^^^^
File "/workspace/.venv/lib/python3.14/site-packages/dill/_dill.py", line 1262, in save_module_dict
StockPickler.save_dict(pickler, obj)
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^
File "/usr/lib/python3.14/pickle.py", line 1064, in save_dict
self._batch_setitems(obj.items(), obj)
~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^
TypeError: Pickler._batch_setitems() takes 2 positional arguments but 3 were given
### Steps to reproduce the bug
ds_train = ds["train"].map(lambda x: {**x, "lang": lang})
### Expected behavior
Fixed bugs
### Environment info
- `datasets` version: 4.2.0
- Platform: Linux-6.8.0-85-generic-x86_64-with-glibc2.39
- Python version: 3.14.0
- `huggingface_hub` version: 0.35.3
- PyArrow version: 21.0.0
- Pandas version: 2.3.3
- `fsspec` version: 2025.9.0
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PR_kwDODunzps6s_New
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docs: document_dataset PDFs & OCR
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| 2025-10-20T14:03:53Z
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CONTRIBUTOR
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Use acronyms consistently across document_dataset docs.
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I_kwDODunzps7QqRQa
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SIGSEGV when Python exits due to near null deref
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[
"The issue seems to come from `dill` which is a `datasets` dependency, e.g. this segfaults:\n\n```python\nimport dill\nfrom tqdm import tqdm\nprogress_bar = tqdm(total=(1000), unit='cols', desc='cols ')\nprogress_bar.update(1)\n```\n\n`tqdm` seems to segfault when `dill` is imported. I only found this about segfault but it's maybe not related https://github.com/tqdm/tqdm/issues/1678 ?",
"After more investigation it seems to be because of it imports `__main__`. This segfaults:\n\n```python\nimport __main__\nfrom tqdm import tqdm\nprogress_bar = tqdm(total=(1000), unit='cols', desc='cols ')\nprogress_bar.update(1)\n```\n\nI opened an issue at https://github.com/tqdm/tqdm/issues/1687",
"Here is a workaround. You can run your code as long as the progress bar is closed before exiting.\n\n```python\nfrom datasets import load_dataset\nfrom tqdm import tqdm\n\nprogress_bar = tqdm(total=(1000), unit='cols', desc='cols ')\nprogress_bar.update(1)\nprogress_bar.close() # avoids the segfault\n```",
"https://github.com/tqdm/tqdm/issues/1687#issuecomment-3392457094"
] | 2025-10-09T22:00:11Z
| 2025-10-10T22:09:24Z
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NONE
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|
### Describe the bug
When I run the following python script using datasets I get a segfault.
```python
from datasets import load_dataset
from tqdm import tqdm
progress_bar = tqdm(total=(1000), unit='cols', desc='cols ')
progress_bar.update(1)
```
```
% lldb -- python3 crashmin.py
(lldb) target create "python3"
Current executable set to '/Users/ian/bug/venv/bin/python3' (arm64).
(lldb) settings set -- target.run-args "crashmin.py"
(lldb) r
Process 8095 launched: '/Users/ian/bug/venv/bin/python3' (arm64)
Process 8095 stopped
* thread #2, stop reason = exec
frame #0: 0x0000000100014b30 dyld`_dyld_start
dyld`_dyld_start:
-> 0x100014b30 <+0>: mov x0, sp
0x100014b34 <+4>: and sp, x0, #0xfffffffffffffff0
0x100014b38 <+8>: mov x29, #0x0 ; =0
Target 0: (Python) stopped.
(lldb) c
Process 8095 resuming
cols : 0% 0/1000 [00:00<?, ?cols/s]Process 8095 stopped
* thread #2, queue = 'com.apple.main-thread', stop reason = EXC_BAD_ACCESS (code=1, address=0x10)
frame #0: 0x0000000101783454 _datetime.cpython-313-darwin.so`delta_new + 188
_datetime.cpython-313-darwin.so`delta_new:
-> 0x101783454 <+188>: ldr x3, [x20, #0x10]
0x101783458 <+192>: adrp x0, 10
0x10178345c <+196>: add x0, x0, #0x6fc ; "seconds"
Target 0: (Python) stopped.
(lldb) bt
* thread #2, queue = 'com.apple.main-thread', stop reason = EXC_BAD_ACCESS (code=1, address=0x10)
* frame #0: 0x0000000101783454 _datetime.cpython-313-darwin.so`delta_new + 188
frame #1: 0x0000000100704b60 Python`type_call + 96
frame #2: 0x000000010067ba34 Python`_PyObject_MakeTpCall + 120
frame #3: 0x00000001007aae3c Python`_PyEval_EvalFrameDefault + 30236
frame #4: 0x000000010067c900 Python`PyObject_CallOneArg + 112
frame #5: 0x000000010070f0a0 Python`slot_tp_finalize + 116
frame #6: 0x000000010070c3b4 Python`subtype_dealloc + 788
frame #7: 0x00000001006c378c Python`insertdict + 756
frame #8: 0x00000001006db2b0 Python`_PyModule_ClearDict + 660
frame #9: 0x000000010080a9a8 Python`finalize_modules + 1772
frame #10: 0x0000000100809a44 Python`_Py_Finalize + 264
frame #11: 0x0000000100837630 Python`Py_RunMain + 252
frame #12: 0x0000000100837ef8 Python`pymain_main + 304
frame #13: 0x0000000100837f98 Python`Py_BytesMain + 40
frame #14: 0x000000019cfcc274 dyld`start + 2840
(lldb) register read x20
x20 = 0x0000000000000000
(lldb)
```
### Steps to reproduce the bug
Run the script above, and observe the segfault.
### Expected behavior
No segfault
### Environment info
```
% pip freeze datasets | grep -i datasets
datasets==4.2.0
(venv) 0 ~/bug 14:58:06
% pip freeze tqdm | grep -i tqdm
tqdm==4.67.1
(venv) 0 ~/bug 14:58:16
% python --version
Python 3.13.7
```
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fix conda deps
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] | 2025-10-09T16:06:47Z
| 2025-10-09T16:16:31Z
| 2025-10-09T16:06:58Z
|
MEMBER
| null | null | null | null |
add an s to be consistent with pandas' on_bad_lines
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PR_kwDODunzps6s6gnr
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Parquet: add `on_bad_file` argument to error/warn/skip bad files
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] | 2025-10-09T14:41:46Z
| 2025-10-09T16:04:35Z
| 2025-10-09T16:04:33Z
|
MEMBER
| null | null | null | null |
```python
from datasets import load_dataset
on_bad_file = "error" # default
# on_bad_file = "warn" # warn and skip bad file
# on_bad_file = "skip" # skip bad file
ds = load_dataset(parquet_dataset_id, on_bad_file=on_bad_file)
```
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Less api calls when resolving data_files
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] | 2025-10-09T13:53:06Z
| 2025-10-09T14:01:57Z
| 2025-10-09T14:01:56Z
|
MEMBER
| null | null | null | null |
There ~10 unnecessary `/api/datasets/user/dataset/revision`calls due to multithreading in data files resolution.
I disabled multithreading, which was actually not useful anymore since `HfFileSystem` has been using caching for a while now.
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I_kwDODunzps7Qh2bE
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|
Support scientific data formats
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[
"Please add the support for `Zarr`! That's what we use in the Bioimaging community. It is crucial, because raw upload of a *single* bio image can take _terrabytes in memory_!\n\nThe python library would be `bioio` or `zarr`:\n- [ ] Zarr: `bioio` or `zarr`\n\nSee a [Zarr example](https://ome.github.io/ome-ngff-validator/?source=https://uk1s3.embassy.ebi.ac.uk/bia-integrator-data/S-BIAD845/796b9fb8-f4ec-4c4b-bfc3-5cb00ccf19fe/796b9fb8-f4ec-4c4b-bfc3-5cb00ccf19fe.zarr)\n\ncc @joshmoore",
"@stefanches7 `zarr` is already usable with the hf hub as an array store. See this example from the [docs](https://huggingface.co/docs/huggingface_hub/en/guides/hf_file_system):\n\n```python\nimport numpy as np\nimport zarr\n\nembeddings = np.random.randn(50000, 1000).astype(\"float32\")\n\n# Write an array to a repo\nwith zarr.open_group(\"hf://my-username/my-model-repo/array-store\", mode=\"w\") as root:\n foo = root.create_group(\"embeddings\")\n foobar = foo.zeros('experiment_0', shape=(50000, 1000), chunks=(10000, 1000), dtype='f4')\n foobar[:] = embeddings\n\n# Read an array from a repo\nwith zarr.open_group(\"hf://my-username/my-model-repo/array-store\", mode=\"r\") as root:\n first_row = root[\"embeddings/experiment_0\"][0]\n```\n\nIs there additional functionality that would not be covered by this?",
"@cakiki I think some tiling capabilities, as well as metadata / labels handling. Consult ome-zarr doc here: https://ome-zarr.readthedocs.io/en/stable/python.html\nVisualization would be the cherry on the top. \n\ncc @joshmoore @lubianat @St3V0Bay: curious what you think",
"zarr-specific dataset viewer would be very cool",
"A support for BIDS it would be perfect, I think it's possible to do all the biosinal can be done with mne. There's a cool community for decoding brain signals, and now with EMG. The new META bracelet EMG is saving things in BIDS.\n\nI can help to interface, coding and try to make this happen. I am available at hugging face discord with the username aristimunha, if some 1-to-1 discuss it would be necessary :)",
"@lhoestq , @cakiki , do you think we can make this happen?",
"If you give me the OK, I'll create the PR to make everything for a Biosignal Reader logic, I already studied the nilabel PR :)",
"That would be an amazing addition ! Feel free to ping me in your PR for review or if you have questions / if I can help",
"@bruAristimunha @lhoestq I've recalled a gold of a resource for BIDS: https://openneuro.org/\n\nDo you think there is a data-easy way to make those visible here on HuggingFace? Afaik they use `datalad` to fetch the data. Maybe the best way is to leave OpenNeuro as-is, not connecting it to HuggingFace at all - just an idea I had spontaneously.",
"I know an \"easy\" way to create interoperability with all biosignal datasets from OpenNeuro =) \n\nFor biosignal data, we can use [EEGDash](https://eegdash.org/) to create a Pytorch dataset, which automates fetch, lazy read, and converts to a pytorch dataset. \n\nI have a question about the best serialization for a Hugging Face dataset, but I can discuss it with some of you on Discord; my username is aristimunha.",
"I can explain it publicly too, but I think a short 5-minute conversation would be better than many, many texts to explain the details.",
"It's ok to have discussions in one place here (or in a separate issue if it's needed) - I also generally check github more often than discord ^^'",
"Hi @bruAristimunha @lhoestq any way we could proceed on this?\nI see someone posted a Nifti vizualization PR: https://github.com/huggingface/datasets/pull/7874 - I think it would be a shame if we couldn't accompany that by a neat way to import BIDS Nifti!",
"@stefanches7 author of #7874 here, would be open to expand the current support to BIDS as well after having a brief look. \nMaybe having a brief call over Discord (my username: TobiasPitters on the huggingface discord server) might help sorting things out, since I am not familiar with BIDS. So getting an understanding over test cases needed, etc. would be great!",
"Hey!!\n\nFrom a bids perspective, I can provide full support for all biosignal types (EEG, iEEG, MEG, EMG). BIDS is a well-established contract format; I believe we can design something that supports the entire medical domain. I think it just requires a few details to be aligned.\n\nFrom my perspective, the tricky part is how to best adapt and serialize from the Hugging Face perspective.\n\nUnder the hood, for the biosignal part, I think I would use [mne](https://mne.tools/) for interoperability and [eegdash](https://eegdash.org/dataset_summary.html) to create the serialized dataset, but we can definitely discuss this further. I will ping you @CloseChoice on Discord.",
"had a discussion with @neurolabusc and here's a quick wrap-up:\n - BIDS support would be huge (@bruAristimunha would be great if we could catch up on that)\n - DICOM support as well, but that might be harder due to a lot of variety in how headers are handled, vendor specifics etc. So to have a reliable pipeline to interact with whole folders of DICOM files (including metadata) would require a lot of work and a lot of testing. Therefore I set https://github.com/huggingface/datasets/pull/7835 back to draft mode. But there are tools that ease the way, especially https://github.com/ImagingDataCommons/highdicom (or potentially https://github.com/QIICR/dcmqi). \n - Getting users would help in order to understand what other formats/features are required therefore loading a bunch of open datasets to the hub using the new Nifti feature would be great. Some tutorials might help here as well.",
"Hi @CloseChoice and @bruAristimunha, glad to meet you both! We could appoint a call; I am currently moving to a new job, so the time slots are limited, but let's connect over Discord and see what we could do.\n\n* BIDS: our hackathon team @zuazo @ekarrieta @lakshya16157 put up a BIDS format converter: https://huggingface.co/spaces/stefanches/OpenBIDSifier. Might be useful for imaging dataset conversion to BIDS.\n* DICOM support: cc @St3V0Bay, the author of DICOM support in CroissantML (https://github.com/mlcommons/croissant/pull/942)\n\ncc @nolden",
"my username is aristimunha within the huggieng face discord to discuss more"
] | 2025-10-09T10:18:24Z
| 2025-11-26T16:09:43Z
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List of formats and libraries we can use to load the data in `datasets`:
- [ ] DICOMs: pydicom
- [x] NIfTIs: nibabel
- [ ] WFDB: wfdb
cc @zaRizk7 for viz
Feel free to comment / suggest other formats and libs you'd like to see or to share your interest in one of the mentioned format
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PR_kwDODunzps6s2zyO
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More Parquet streaming docs
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] | 2025-10-09T09:39:11Z
| 2025-10-09T10:01:46Z
| 2025-10-09T10:01:43Z
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I_kwDODunzps7Qduon
| 7,802
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[Docs] Missing documentation for `Dataset.from_dict`
|
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"I'd like to work on this documentation issue.",
"Hi I'd like to work on this. I can see the docstring is already in the code. \nCould you confirm:\n1. Is this still available?\n2. Should I add this to the main_classes.md file, or is there a specific \n documentation file I should update?\n3. Are there any formatting guidelines I should follow?\n\nI'm new to contributing but eager to learn!"
] | 2025-10-09T02:54:41Z
| 2025-10-19T16:09:33Z
| null |
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Documentation link: https://huggingface.co/docs/datasets/en/package_reference/main_classes
Link to method (docstring present): https://github.com/huggingface/datasets/blob/6f2502c5a026caa89839713f6f7c8b958e5e83eb/src/datasets/arrow_dataset.py#L1029
The docstring is present for the function, but seems missing from the official documentation for the `Dataset` class on HuggingFace.
The method in question:
```python
@classmethod
def from_dict(
cls,
mapping: dict,
features: Optional[Features] = None,
info: Optional[DatasetInfo] = None,
split: Optional[NamedSplit] = None,
) -> "Dataset":
"""
Convert `dict` to a `pyarrow.Table` to create a [`Dataset`].
Important: a dataset created with from_dict() lives in memory
and therefore doesn't have an associated cache directory.
This may change in the future, but in the meantime if you
want to reduce memory usage you should write it back on disk
and reload using e.g. save_to_disk / load_from_disk.
Args:
mapping (`Mapping`):
Mapping of strings to Arrays or Python lists.
features ([`Features`], *optional*):
Dataset features.
info (`DatasetInfo`, *optional*):
Dataset information, like description, citation, etc.
split (`NamedSplit`, *optional*):
Name of the dataset split.
Returns:
[`Dataset`]
"""
```
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PR_kwDODunzps6swITn
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Add parquet scan options and docs
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"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7801). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update."
] | 2025-10-08T18:04:52Z
| 2025-10-09T07:55:58Z
| 2025-10-09T07:55:56Z
|
MEMBER
| null | null | null | null |
I added scan options, useful to control buffering and caching when streaming and docs, including how to select a subset of columns and apply filters
|
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PR_kwDODunzps6sqkmT
| 7,800
|
Fix polars cast column image
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[
"The Image() type is set to have a storage of `string` for \"path\" and not `large_string`. Therefore while your change does work to do the conversion, it can create issues in other places. For example I'm pretty sure you wouldn't be able to concatenate the resulting dataset with a dataset with Image() using `string`.\r\n\r\nMaybe we can convert `large_string` data to `string` somehow to make this work ?",
"@lhoestq thanks for the review. Just to be thorough I checked the concat example and this seems to work:\r\n```python\r\nimport sys\r\nfrom pathlib import Path\r\nsys.path.insert(0, str(Path(__file__).parent.parent / \"src\"))\r\n\r\nimport pandas as pd\r\nimport polars as pl\r\nfrom datasets import Dataset, Image, concatenate_datasets\r\nimport pyarrow as pa\r\n\r\nimage_path = \"tests/features/data/test_image_rgb.jpg\"\r\n\r\n\r\ndf_pl = pl.DataFrame({\"image\": [image_path]})\r\ndset_pl = Dataset.from_polars(df_pl).cast_column(\"image\", Image())\r\n\r\n\r\ndf_pd = pd.DataFrame({\"image\": [image_path]})\r\ndset_pd = Dataset.from_pandas(df_pd).cast_column(\"image\", Image())\r\n\r\n\r\nconcatenated = concatenate_datasets([dset_pl, dset_pd])\r\nprint(concatenated._data)\r\n```\r\noutputs:\r\n```bash\r\nConcatenationTable\r\nimage: struct<bytes: binary, path: string>\r\n child 0, bytes: binary\r\n child 1, path: string\r\n----\r\nimage: [\r\n -- is_valid: all not null\r\n -- child 0 type: binary\r\n[null]\r\n -- child 1 type: string\r\n[\"tests/features/data/test_image_rgb.jpg\"],\r\n -- is_valid: all not null\r\n -- child 0 type: binary\r\n[null]\r\n -- child 1 type: string\r\n[\"tests/features/data/test_image_rgb.jpg\"]]\r\n```\r\n(not quite sure though if this is a really what you meant). I agree that there could be pro a lot of problems if we rely on implicit conversion therefore I updated the PR. I also checked the exception handling locally and it works, am unsure though if we want to create such large objects in the CI, if desired I can add a test for that.",
"The docs for this PR live [here](https://moon-ci-docs.huggingface.co/docs/datasets/pr_7800). All of your documentation changes will be reflected on that endpoint. The docs are available until 30 days after the last update.",
"Apologies @lhoestq @CloseChoice , I unintentionally reverted this PR earlier. Leaving it as is."
] | 2025-10-08T10:01:18Z
| 2025-10-18T13:48:37Z
| 2025-10-13T14:39:47Z
|
CONTRIBUTOR
| null | null | null | null |
Fixes #7765
The problem here is that polars uses pyarrow large_string for images, while pandas and others just use the string type. This PR solves that and adds a test.
```python
import polars as pl
from datasets import Dataset
import pandas as pd
import pyarrow as pa
from pathlib import Path
shared_datadir = Path("tests/features/data")
image_path = str(shared_datadir / "test_image_rgb.jpg")
# Load via polars
df_polars = pl.DataFrame({"image_path": [image_path]})
dataset_polars = Dataset.from_polars(df_polars)
print("Polars DF is large string:", pa.types.is_large_string(df_polars.to_arrow().schema[0].type))
print("Polars DF is string:", pa.types.is_string(df_polars.to_arrow().schema[0].type))
# Load via pandas
df_pandas = pd.DataFrame({"image_path": [image_path]})
dataset_pandas = Dataset.from_pandas(df_pandas)
arrow_table_pd = pa.Table.from_pandas(df_pandas)
print("Pandas DF is large string", pa.types.is_large_string(arrow_table_pd.schema[0].type))
print("Pandas DF is string", pa.types.is_string(arrow_table_pd.schema[0].type))
```
Outputs:
```bash
Polars DF is large string: True
Polars DF is string: False
Pandas DF is large string False
Pandas DF is string True
```
|
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PR_kwDODunzps6sTJKA
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Define CI future
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] | 2025-10-06T15:15:45Z
| 2025-10-07T14:30:21Z
| 2025-10-07T14:30:19Z
|
MEMBER
| null | null | null | null |
this should fix the CI which currently uses transformers on 3.9 while it's now unsupported
|
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