File size: 10,599 Bytes
778d47d | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 | from utils.db_utils import get_cursor_from_path, execute_sql_long_time_limitation
import json
import os, shutil
from tqdm import tqdm
def remove_contents_of_a_folder(index_path):
# if index_path does not exist, then create it
os.makedirs(index_path, exist_ok = True)
# remove files in index_path
for filename in os.listdir(index_path):
file_path = os.path.join(index_path, filename)
try:
if os.path.isfile(file_path) or os.path.islink(file_path):
os.unlink(file_path)
elif os.path.isdir(file_path):
shutil.rmtree(file_path)
except Exception as e:
print('Failed to delete %s. Reason: %s' % (file_path, e))
def lowercase_directory_name(directory_path):
# Get the absolute path of the directory
abs_directory_path = os.path.abspath(directory_path)
# Split the directory path to get the parent directory and the folder name
parent_dir, current_dir = os.path.split(abs_directory_path)
# Convert the folder name to lowercase
lowercase_dir = current_dir.lower()
# Define the new directory path with the lowercase folder name
new_directory_path = os.path.join(parent_dir, lowercase_dir).lower()
# if os.path.isdir(abs_directory_path) and os.path.isdir(new_directory_path):
# shutil.rmtree(abs_directory_path)
# return
# Rename the directory
if current_dir != lowercase_dir:
os.rename(abs_directory_path, new_directory_path)
print(f"Renamed directory: '{current_dir}' to '{lowercase_dir}'")
else:
print(f"The directory '{current_dir}' is already in lowercase.")
def build_content_index(db_path, index_path):
'''
Create a BM25 index for all contents in a database
'''
cursor = get_cursor_from_path(db_path)
results = execute_sql_long_time_limitation(cursor, "SELECT name FROM sqlite_master WHERE type='table';")
table_names = [result[0] for result in results]
for table_name in table_names:
# skip SQLite system table: sqlite_sequence
table_name = table_name.lower()
if table_name == "sqlite_sequence":
continue
results = execute_sql_long_time_limitation(cursor, "SELECT name FROM PRAGMA_TABLE_INFO('{}')".format(table_name))
column_names_in_one_table = [result[0] for result in results]
for column_name in column_names_in_one_table:
column_name = column_name.lower()
column_index_path = f"{index_path}/{table_name}-**-{column_name}"
if os.path.exists(column_index_path):
# lowercase folder directory
# lowercase_directory_name(column_index_path)
continue
all_column_contents = []
try:
print("SELECT DISTINCT `{}` FROM `{}` WHERE `{}` IS NOT NULL;".format(column_name, table_name, column_name))
results = execute_sql_long_time_limitation(cursor, "SELECT DISTINCT `{}` FROM `{}` WHERE `{}` IS NOT NULL;".format(column_name, table_name, column_name))
column_contents = [str(result[0]).strip() for result in results]
for c_id, column_content in enumerate(column_contents):
# remove empty and extremely-long contents
if len(column_content) != 0 and len(column_content) <= 50:
all_column_contents.append(
{
"id": "{}-**-{}-**-{}".format(table_name, column_name, c_id).lower(),
"contents": column_content
}
)
except Exception as e:
print(str(e))
os.makedirs('./data/temp_db_index', exist_ok = True)
with open("./data/temp_db_index/contents.json", "w") as f:
f.write(json.dumps(all_column_contents, indent = 2, ensure_ascii = True))
# Building a BM25 Index (Direct Java Implementation), see https://github.com/castorini/pyserini/blob/master/docs/usage-index.md
cmd = "python -m pyserini.index.lucene --collection JsonCollection --input ./data/temp_db_index --index \"{}\" --generator DefaultLuceneDocumentGenerator --threads 16 --storePositions --storeDocvectors --storeRaw".format(column_index_path)
print(f"added {column_index_path}")
d = os.system(cmd)
print(d)
os.remove("./data/temp_db_index/contents.json")
if __name__ == "__main__":
# print("build content index for BIRD's training set databases...")
# remove_contents_of_a_folder("data/bird-062024/train/db_contents_index")
# # build content index for BIRD's training set databases
# for db_id in tqdm(os.listdir("data/bird-062024/train/train_databases")):
# if db_id.endswith(".json"):
# continue
# print(db_id)
# build_content_index(
# os.path.join("data/bird-062024/train/train_databases/", db_id, db_id + ".sqlite"),
# os.path.join("data/bird-062024/train/db_contents_index/", db_id)
# )
# print("build content index for BIRD's dev set databases...")
# remove_contents_of_a_folder("data/bird-062024/dev/db_contents_index")
# # build content index for BIRD's dev set databases
# for db_id in tqdm(os.listdir("data/bird-062024/dev/dev_databases")):
# print(db_id)
# build_content_index(
# os.path.join("data/bird-062024/dev/dev_databases/", db_id, db_id + ".sqlite"),
# os.path.join("data/bird-062024/dev/db_contents_index/", db_id)
# )
# print("build content index for BIRD's training set databases...")
# remove_contents_of_a_folder("data/sft_data_collections/bird/train/db_contents_index")
# # build content index for BIRD's training set databases
# for db_id in tqdm(os.listdir("data/sft_data_collections/bird/train/train_databases")):
# if db_id.endswith(".json"):
# continue
# print(db_id)
# build_content_index(
# os.path.join("data/sft_data_collections/bird/train/train_databases/", db_id, db_id + ".sqlite"),
# os.path.join("data/sft_data_collections/bird/train/db_contents_index/", db_id)
# )
# print("build content index for BIRD's dev set databases...")
# remove_contents_of_a_folder("data/sft_data_collections/bird/dev/db_contents_index")
# # build content index for BIRD's dev set databases
# for db_id in tqdm(os.listdir("data/sft_data_collections/bird/dev/dev_databases")):
# print(db_id)
# build_content_index(
# os.path.join("data/sft_data_collections/bird/dev/dev_databases/", db_id, db_id + ".sqlite"),
# os.path.join("data/sft_data_collections/bird/dev/db_contents_index/", db_id)
# )
# print("build content index for spider's databases...")
# remove_contents_of_a_folder("./data/sft_data_collections/spider/db_contents_index")
# # build content index for spider's databases
# for db_id in os.listdir("./data/sft_data_collections/spider/database"):
# print(db_id)
# build_content_index(
# os.path.join("./data/sft_data_collections/spider/database/", db_id, db_id + ".sqlite"),
# os.path.join("./data/sft_data_collections/spider/db_contents_index/", db_id)
# )
# print("build content index for Dr.Spider's 17 perturbation test sets...")
# # build content index for Dr.Spider's 17 perturbation test sets
# test_set_names = os.listdir("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data")
# test_set_names.remove("Spider-dev")
# for test_set_name in test_set_names:
# if test_set_name.startswith("DB_"):
# remove_contents_of_a_folder(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index"))
# for db_id in os.listdir(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "database_post_perturbation")):
# print(db_id)
# build_content_index(
# os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "database_post_perturbation", db_id, db_id + ".sqlite"),
# os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index", db_id)
# )
# else:
# remove_contents_of_a_folder(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index"))
# for db_id in os.listdir(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "databases")):
# if db_id in ["README.md", "database_original"]:
# continue
# print(db_id)
# build_content_index(
# os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "databases", db_id, db_id + ".sqlite"),
# os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index", db_id)
# )
# print("build content index for Bank_Financials and Aminer_Simplified training set databases...")
# remove_contents_of_a_folder("./data/sft_data_collections/domain_datasets/db_contents_index")
# # build content index for Bank_Financials's training set databases
# for db_id in os.listdir("./data/sft_data_collections/domain_datasets/databases"):
# print(db_id)
# build_content_index(
# os.path.join("./data/sft_data_collections/domain_datasets/databases/", db_id, db_id + ".sqlite"),
# os.path.join("./data/sft_data_collections/domain_datasets/db_contents_index/", db_id)
# )
print("build content index for MACSQL spider's databases...")
remove_contents_of_a_folder("/home/datht/llmsql/data//spider/db_contents_index")
# build content index for spider's databases
for db_id in os.listdir("/home/datht/llmsql/data/spider/database"):
print(db_id)
build_content_index(
os.path.join("/home/datht/llmsql/data/spider/database", db_id, db_id + ".sqlite"),
os.path.join("/home/datht/llmsql/data//spider/db_contents_index", db_id)
) |