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Push code: scripts, slurm sbatch, recipes, utils (v3 + selector series)
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import os
from fastapi import FastAPI, HTTPException
from pydantic import BaseModel
from typing import List, Optional
from pyserini.search.lucene import LuceneSearcher
from tqdm import tqdm
import json
class ColumnContentSearcher:
def __init__(self, source_db_content_index_paths, synonym_sources, lazy_load: bool = False):
"""
Initialize the ColumnContentSearcher with multiple sources.
Parameters:
source_db_content_index_paths (dict): A dictionary mapping source names to their db_content_index_paths.
lazy_load (bool): If True, store only index paths at startup; construct LuceneSearcher
on demand at first request (memory-efficient — fixes OOM on large index sets).
"""
self.source_db_content_index_paths = source_db_content_index_paths
self.searcher = {}
self.lazy_load = lazy_load
for source, db_content_index_path in source_db_content_index_paths.items():
db_ids = os.listdir(db_content_index_path)
self.searcher[source] = {}
for db_id in tqdm(db_ids, desc=f"{'Indexing paths' if lazy_load else 'Loading searchers'} for source '{source}'"):
table_column_indexes = os.listdir(os.path.join(db_content_index_path, db_id))
for table_column_index in table_column_indexes:
try:
table, column = table_column_index.split("-**-")
searcher_path = os.path.join(db_content_index_path, db_id, table_column_index)
if os.path.isdir(searcher_path):
subdirs = os.listdir(searcher_path)
if len(subdirs) == 1:
searcher_path = os.path.join(searcher_path, subdirs[0])
column = column + "/" + subdirs[0]
if lazy_load:
# Just remember the path; build the searcher on first hit.
self.searcher[source].setdefault(db_id, {}).setdefault(table, {})[column] = searcher_path
else:
lucene_searcher = LuceneSearcher(searcher_path)
lucene_searcher.set_bm25(k1=1.2, b=0.75)
self.searcher[source].setdefault(db_id, {}).setdefault(table, {})[column] = lucene_searcher
except Exception as e:
print(f"Error loading {source}/{db_id}/{table_column_index}: {e}")
for source in synonym_sources:
self.searcher[source] = self.searcher[synonym_sources[source]]
def get_searcher(self, source, db_id, table, column):
"""
Retrieve the searcher for the given source, db_id, table, and column.
Lazy-loads the LuceneSearcher on first request when lazy_load=True.
"""
entry = self.searcher.get(source, {}).get(db_id, {}).get(table, {}).get(column, None)
if entry is None:
return None
# Lazy: if entry is a path string, build searcher and replace in cache.
if isinstance(entry, str):
try:
searcher = LuceneSearcher(entry)
searcher.set_bm25(k1=1.2, b=0.75)
self.searcher[source][db_id][table][column] = searcher
return searcher
except Exception as e:
print(f"Warning: Failed to load Lucene index at {entry}: {e}")
self.searcher[source][db_id][table][column] = None
return None
return entry
def search_column_content(self, source, db_id, table, column, query, k=10):
"""
Search the column content for a given query.
Parameters:
source (str): The source name (e.g., 'bird-dev', 'bird-train').
db_id (str): The database identifier.
table (str): The table name.
column (str): The column name.
query (str): The search query.
k (int): The number of results to return.
Returns:
list: A list of search results, or None if the searcher is not found.
"""
searcher = self.get_searcher(source, db_id, table, column)
if searcher is None:
return None
hits = searcher.search(query, k=k)
if len(hits) > 0:
results = [json.loads(hit.raw) for hit in hits]
results = [x['contents'] for x in results]
elif searcher.num_docs > 0:
# BM25 found no query-relevant hits, but the column is non-empty.
# Return the first indexed document as a fixed, reproducible
# "representative example" from the column's value set.
# This satisfies the paper's claim that the fallback provides a
# representative in-domain value — the first document by Lucene
# insertion order is a stable, deterministic sample from V_ci.
results = [json.loads(searcher.doc(0).raw())['contents']]
else:
results = []
# if args.lazy_load:
# del searcher
# gc.collect()
return results
# FastAPI app
app = FastAPI(title="Column Content Searcher API")
# Initialize the ColumnContentSearcher in the startup event
column_content_searcher = None
@app.on_event("startup")
def startup_event():
global column_content_searcher
# Replace 'your_db_content_index_path' with the actual path to your index
test_set_names = [
# DB Schema related
'DB_schema_synonym',
'DB_schema_abbreviation',
'DB_DBcontent_equivalence',
# NLQ related
'NLQ_keyword_synonym',
'NLQ_keyword_carrier',
'NLQ_column_synonym',
'NLQ_column_carrier',
'NLQ_column_attribute',
'NLQ_column_value',
'NLQ_value_synonym',
'NLQ_multitype',
'NLQ_others',
# SQL related
'SQL_comparison',
'SQL_sort_order',
'SQL_NonDB_number',
'SQL_DB_text',
'SQL_DB_number',
]
DR_SPIDER_BASE = './data/sft_data_collections/diagnostic-robustness-text-to-sql/data'
source_db_content_index_paths = {
# BIRD
'bird-dev': './data/bird/dev/db_contents_index',
'bird-train': './data/bird/train/db_contents_index',
# Spider main (dev + test share same databases)
'spider-train': './data/spider/db_contents_index',
# Spider-DK (3 new databases)
'spider-dk': './data/sft_data_collections/Spider-DK/db_contents_index',
# Dr. Spider — DB perturbation sets have modified databases
f'dr.spider-DB_schema_synonym': f'{DR_SPIDER_BASE}/DB_schema_synonym/db_contents_index',
f'dr.spider-DB_schema_abbreviation': f'{DR_SPIDER_BASE}/DB_schema_abbreviation/db_contents_index',
f'dr.spider-DB_DBcontent_equivalence':f'{DR_SPIDER_BASE}/DB_DBcontent_equivalence/db_contents_index',
# Dr. Spider — NLQ/SQL perturbation sets reuse the original Spider databases
f'dr.spider-NLQ_keyword_synonym': f'{DR_SPIDER_BASE}/NLQ_keyword_synonym/db_contents_index',
f'dr.spider-NLQ_keyword_carrier': f'{DR_SPIDER_BASE}/NLQ_keyword_carrier/db_contents_index',
f'dr.spider-NLQ_column_synonym': f'{DR_SPIDER_BASE}/NLQ_column_synonym/db_contents_index',
f'dr.spider-NLQ_column_carrier': f'{DR_SPIDER_BASE}/NLQ_column_carrier/db_contents_index',
f'dr.spider-NLQ_column_attribute': f'{DR_SPIDER_BASE}/NLQ_column_attribute/db_contents_index',
f'dr.spider-NLQ_column_value': f'{DR_SPIDER_BASE}/NLQ_column_value/db_contents_index',
f'dr.spider-NLQ_value_synonym': f'{DR_SPIDER_BASE}/NLQ_value_synonym/db_contents_index',
f'dr.spider-NLQ_multitype': f'{DR_SPIDER_BASE}/NLQ_multitype/db_contents_index',
f'dr.spider-NLQ_others': f'{DR_SPIDER_BASE}/NLQ_others/db_contents_index',
f'dr.spider-SQL_comparison': f'{DR_SPIDER_BASE}/SQL_comparison/db_contents_index',
f'dr.spider-SQL_sort_order': f'{DR_SPIDER_BASE}/SQL_sort_order/db_contents_index',
f'dr.spider-SQL_DB_text': f'{DR_SPIDER_BASE}/SQL_DB_text/db_contents_index',
f'dr.spider-SQL_DB_number': f'{DR_SPIDER_BASE}/SQL_DB_number/db_contents_index',
f'dr.spider-SQL_NonDB_number': f'{DR_SPIDER_BASE}/SQL_NonDB_number/db_contents_index',
# Domain datasets
'bank_financials-dev': './data/sft_data_collections/domain_datasets/db_contents_index',
'bank_financials-train': './data/sft_data_collections/domain_datasets/db_contents_index',
}
# Filter to only existing index directories to avoid startup errors
source_db_content_index_paths = {
k: v for k, v in source_db_content_index_paths.items() if os.path.isdir(v)
}
synonym_sources = {
'spider-dev': 'spider-train',
'spider-syn-dev': 'spider-train',
'spider-realistic':'spider-train',
'aminer_simplified-dev': 'bank_financials-dev',
'aminer_simplified-train': 'bank_financials-dev',
}
if args.db_content_index is not None:
# delete all the default paths except the one specified
source_db_content_index_paths = {k: v for k, v in source_db_content_index_paths.items() if k == args.db_content_index}
# Only keep synonym entries whose target source is actually loaded
synonym_sources = {
k: v for k, v in synonym_sources.items()
if v in source_db_content_index_paths
}
use_lazy = bool(args is not None and getattr(args, "lazy_load", False))
column_content_searcher = ColumnContentSearcher(source_db_content_index_paths, synonym_sources, lazy_load=use_lazy)
# Request model
class SearchRequest(BaseModel):
source: str
db_id: str
table: str
column: str
query: str
k: Optional[int] = 10 # Number of results to return
# Response model
class SearchResponse(BaseModel):
results: List[str]
@app.post("/search_column_content", response_model=SearchResponse)
def search_column_content(request: SearchRequest):
if column_content_searcher is None:
raise HTTPException(status_code=500, detail="Searcher not initialized.")
results = column_content_searcher.search_column_content(
source=request.source,
db_id=request.db_id,
table=request.table,
column=request.column,
query=request.query,
k=request.k
)
if results is None:
print(request.source, request.db_id, request.table, request.column)
raise HTTPException(status_code=404, detail="Searcher not found for the given db_id, table, and column.")
return SearchResponse(results=results)
if __name__ == '__main__':
import argparse
parser = argparse.ArgumentParser()
parser.add_argument("--lazy_load", action='store_true')
parser.add_argument("--port", type=int, default=8005)
parser.add_argument("--db_content_index", type=str, default=None)
args = parser.parse_args()
# Run the app with Uvicorn
import uvicorn
uvicorn.run(app, host="0.0.0.0", port=args.port, reload=False)