from utils.db_utils import get_cursor_from_path, execute_sql_long_time_limitation import json import os, shutil from tqdm import tqdm def remove_contents_of_a_folder(index_path): # if index_path does not exist, then create it os.makedirs(index_path, exist_ok = True) # remove files in index_path for filename in os.listdir(index_path): file_path = os.path.join(index_path, filename) try: if os.path.isfile(file_path) or os.path.islink(file_path): os.unlink(file_path) elif os.path.isdir(file_path): shutil.rmtree(file_path) except Exception as e: print('Failed to delete %s. Reason: %s' % (file_path, e)) def lowercase_directory_name(directory_path): # Get the absolute path of the directory abs_directory_path = os.path.abspath(directory_path) # Split the directory path to get the parent directory and the folder name parent_dir, current_dir = os.path.split(abs_directory_path) # Convert the folder name to lowercase lowercase_dir = current_dir.lower() # Define the new directory path with the lowercase folder name new_directory_path = os.path.join(parent_dir, lowercase_dir).lower() # if os.path.isdir(abs_directory_path) and os.path.isdir(new_directory_path): # shutil.rmtree(abs_directory_path) # return # Rename the directory if current_dir != lowercase_dir: os.rename(abs_directory_path, new_directory_path) print(f"Renamed directory: '{current_dir}' to '{lowercase_dir}'") else: print(f"The directory '{current_dir}' is already in lowercase.") def build_content_index(db_path, index_path): ''' Create a BM25 index for all contents in a database ''' cursor = get_cursor_from_path(db_path) results = execute_sql_long_time_limitation(cursor, "SELECT name FROM sqlite_master WHERE type='table';") table_names = [result[0] for result in results] for table_name in table_names: # skip SQLite system table: sqlite_sequence table_name = table_name.lower() if table_name == "sqlite_sequence": continue results = execute_sql_long_time_limitation(cursor, "SELECT name FROM PRAGMA_TABLE_INFO('{}')".format(table_name)) column_names_in_one_table = [result[0] for result in results] for column_name in column_names_in_one_table: column_name = column_name.lower() column_index_path = f"{index_path}/{table_name}-**-{column_name}" if os.path.exists(column_index_path): # lowercase folder directory # lowercase_directory_name(column_index_path) continue all_column_contents = [] try: print("SELECT DISTINCT `{}` FROM `{}` WHERE `{}` IS NOT NULL;".format(column_name, table_name, column_name)) results = execute_sql_long_time_limitation(cursor, "SELECT DISTINCT `{}` FROM `{}` WHERE `{}` IS NOT NULL;".format(column_name, table_name, column_name)) column_contents = [str(result[0]).strip() for result in results] for c_id, column_content in enumerate(column_contents): # remove empty and extremely-long contents if len(column_content) != 0 and len(column_content) <= 50: all_column_contents.append( { "id": "{}-**-{}-**-{}".format(table_name, column_name, c_id).lower(), "contents": column_content } ) except Exception as e: print(str(e)) os.makedirs('./data/temp_db_index', exist_ok = True) with open("./data/temp_db_index/contents.json", "w") as f: f.write(json.dumps(all_column_contents, indent = 2, ensure_ascii = True)) # Building a BM25 Index (Direct Java Implementation), see https://github.com/castorini/pyserini/blob/master/docs/usage-index.md cmd = "python -m pyserini.index.lucene --collection JsonCollection --input ./data/temp_db_index --index \"{}\" --generator DefaultLuceneDocumentGenerator --threads 16 --storePositions --storeDocvectors --storeRaw".format(column_index_path) print(f"added {column_index_path}") d = os.system(cmd) print(d) os.remove("./data/temp_db_index/contents.json") if __name__ == "__main__": # print("build content index for BIRD's training set databases...") # remove_contents_of_a_folder("data/bird-062024/train/db_contents_index") # # build content index for BIRD's training set databases # for db_id in tqdm(os.listdir("data/bird-062024/train/train_databases")): # if db_id.endswith(".json"): # continue # print(db_id) # build_content_index( # os.path.join("data/bird-062024/train/train_databases/", db_id, db_id + ".sqlite"), # os.path.join("data/bird-062024/train/db_contents_index/", db_id) # ) # print("build content index for BIRD's dev set databases...") # remove_contents_of_a_folder("data/bird-062024/dev/db_contents_index") # # build content index for BIRD's dev set databases # for db_id in tqdm(os.listdir("data/bird-062024/dev/dev_databases")): # print(db_id) # build_content_index( # os.path.join("data/bird-062024/dev/dev_databases/", db_id, db_id + ".sqlite"), # os.path.join("data/bird-062024/dev/db_contents_index/", db_id) # ) # print("build content index for BIRD's training set databases...") # remove_contents_of_a_folder("data/sft_data_collections/bird/train/db_contents_index") # # build content index for BIRD's training set databases # for db_id in tqdm(os.listdir("data/sft_data_collections/bird/train/train_databases")): # if db_id.endswith(".json"): # continue # print(db_id) # build_content_index( # os.path.join("data/sft_data_collections/bird/train/train_databases/", db_id, db_id + ".sqlite"), # os.path.join("data/sft_data_collections/bird/train/db_contents_index/", db_id) # ) # print("build content index for BIRD's dev set databases...") # remove_contents_of_a_folder("data/sft_data_collections/bird/dev/db_contents_index") # # build content index for BIRD's dev set databases # for db_id in tqdm(os.listdir("data/sft_data_collections/bird/dev/dev_databases")): # print(db_id) # build_content_index( # os.path.join("data/sft_data_collections/bird/dev/dev_databases/", db_id, db_id + ".sqlite"), # os.path.join("data/sft_data_collections/bird/dev/db_contents_index/", db_id) # ) # print("build content index for spider's databases...") # remove_contents_of_a_folder("./data/sft_data_collections/spider/db_contents_index") # # build content index for spider's databases # for db_id in os.listdir("./data/sft_data_collections/spider/database"): # print(db_id) # build_content_index( # os.path.join("./data/sft_data_collections/spider/database/", db_id, db_id + ".sqlite"), # os.path.join("./data/sft_data_collections/spider/db_contents_index/", db_id) # ) # print("build content index for Dr.Spider's 17 perturbation test sets...") # # build content index for Dr.Spider's 17 perturbation test sets # test_set_names = os.listdir("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data") # test_set_names.remove("Spider-dev") # for test_set_name in test_set_names: # if test_set_name.startswith("DB_"): # remove_contents_of_a_folder(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index")) # for db_id in os.listdir(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "database_post_perturbation")): # print(db_id) # build_content_index( # os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "database_post_perturbation", db_id, db_id + ".sqlite"), # os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index", db_id) # ) # else: # remove_contents_of_a_folder(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index")) # for db_id in os.listdir(os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "databases")): # if db_id in ["README.md", "database_original"]: # continue # print(db_id) # build_content_index( # os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "databases", db_id, db_id + ".sqlite"), # os.path.join("./data/sft_data_collections/diagnostic-robustness-text-to-sql/data/", test_set_name, "db_contents_index", db_id) # ) # print("build content index for Bank_Financials and Aminer_Simplified training set databases...") # remove_contents_of_a_folder("./data/sft_data_collections/domain_datasets/db_contents_index") # # build content index for Bank_Financials's training set databases # for db_id in os.listdir("./data/sft_data_collections/domain_datasets/databases"): # print(db_id) # build_content_index( # os.path.join("./data/sft_data_collections/domain_datasets/databases/", db_id, db_id + ".sqlite"), # os.path.join("./data/sft_data_collections/domain_datasets/db_contents_index/", db_id) # ) print("build content index for MACSQL spider's databases...") remove_contents_of_a_folder("/home/datht/llmsql/data//spider/db_contents_index") # build content index for spider's databases for db_id in os.listdir("/home/datht/llmsql/data/spider/database"): print(db_id) build_content_index( os.path.join("/home/datht/llmsql/data/spider/database", db_id, db_id + ".sqlite"), os.path.join("/home/datht/llmsql/data//spider/db_contents_index", db_id) )