""" Data Preprocessing Pipeline for Olist E-commerce ================================================= CLO4: Kiểm soát chất lượng dữ liệu, làm sạch, chuẩn hóa, giảm số chiều Pipeline: 1. Data Quality Assessment (6 dimensions) 2. Missing Value Handling (multiple strategies) 3. Outlier Detection & Treatment (IQR, Z-score) 4. Normalization (Min-Max, Z-Score, Robust) 5. Dimensionality Reduction (PCA) 6. Feature Engineering (domain-specific) Usage: python analytics/data_preprocessing.py --data-dir ./data/raw --output-dir ./data/processed """ import os import sys import json import logging import argparse from datetime import datetime import pandas as pd import numpy as np from sklearn.preprocessing import MinMaxScaler, StandardScaler, RobustScaler from sklearn.decomposition import PCA from sklearn.impute import KNNImputer import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt import warnings warnings.filterwarnings('ignore') logging.basicConfig(level=logging.INFO, format='%(asctime)s [%(levelname)s] %(message)s') logger = logging.getLogger(__name__) # ============================================================================== # 1. DATA QUALITY ASSESSMENT # ============================================================================== class DataQualityAssessor: """Đánh giá chất lượng dữ liệu theo 6 chiều.""" def __init__(self): self.report = {} def assess(self, df: pd.DataFrame, name: str) -> dict: logger.info(f"[QUALITY] Assessing '{name}': {df.shape}") r = {'table': name, 'rows': len(df), 'columns': len(df.columns)} # 1. Completeness missing = df.isnull().sum() total_cells = df.shape[0] * df.shape[1] r['completeness_pct'] = round((1 - missing.sum() / total_cells) * 100, 2) r['missing_by_col'] = {c: int(v) for c, v in missing.items() if v > 0} # 2. Uniqueness r['duplicate_rows'] = int(df.duplicated().sum()) # 3. Validity — negatives in numeric num_cols = df.select_dtypes(include=[np.number]).columns r['negative_values'] = {c: int((df[c] < 0).sum()) for c in num_cols if (df[c] < 0).sum() > 0} # 4. Consistency — mixed case, whitespace str_cols = df.select_dtypes(include=['object']).columns r['consistency_issues'] = {} for c in str_cols: vals = df[c].dropna().unique() lower_unique = set(v.strip().lower() for v in vals if isinstance(v, str)) if len(lower_unique) < len(vals): r['consistency_issues'][c] = f"{len(vals)} unique → {len(lower_unique)} after normalization" # 5. Outliers (IQR) on key numeric columns r['outliers'] = {} for c in num_cols: data = df[c].dropna() if len(data) < 10: continue Q1, Q3 = data.quantile(0.25), data.quantile(0.75) IQR = Q3 - Q1 out_count = int(((data < Q1 - 1.5 * IQR) | (data > Q3 + 1.5 * IQR)).sum()) if out_count > 0: r['outliers'][c] = {'count': out_count, 'pct': round(out_count / len(data) * 100, 2), 'Q1': round(Q1, 2), 'Q3': round(Q3, 2), 'IQR': round(IQR, 2)} self.report[name] = r return r def print_report(self): for name, r in self.report.items(): print(f"\n{'='*70}") print(f" DATA QUALITY: {name} ({r['rows']:,} rows × {r['columns']} cols)") print(f"{'='*70}") print(f" Completeness: {r['completeness_pct']}%") print(f" Duplicates: {r['duplicate_rows']}") if r['missing_by_col']: print(f" Missing values:") for c, v in sorted(r['missing_by_col'].items(), key=lambda x: -x[1])[:10]: print(f" {c}: {v} ({v/r['rows']*100:.1f}%)") if r['negative_values']: print(f" Negative values: {r['negative_values']}") if r['consistency_issues']: print(f" Consistency issues: {r['consistency_issues']}") if r['outliers']: print(f" Outliers (IQR):") for c, info in list(r['outliers'].items())[:8]: print(f" {c}: {info['count']} ({info['pct']}%) | Q1={info['Q1']}, Q3={info['Q3']}") # ============================================================================== # 2. DATA CLEANER # ============================================================================== class OlistDataCleaner: """Làm sạch và chuẩn hóa dữ liệu Olist.""" def __init__(self): self.log = [] def _log(self, msg): self.log.append(msg) logger.info(f"[CLEAN] {msg}") def clean_orders(self, df: pd.DataFrame) -> pd.DataFrame: self._log(f"Orders: start {len(df)} rows") df = df.drop_duplicates(subset=['order_id']) # Timestamp columns ts_cols = ['order_purchase_timestamp', 'order_approved_at', 'order_delivered_carrier_date', 'order_delivered_customer_date', 'order_estimated_delivery_date'] for c in ts_cols: if c in df.columns: df[c] = pd.to_datetime(df[c], errors='coerce') # Standardize status df['order_status'] = df['order_status'].str.strip().str.lower() # Remove orders without purchase timestamp before = len(df) df = df.dropna(subset=['order_purchase_timestamp']) self._log(f"Orders: removed {before - len(df)} without purchase_ts → {len(df)} rows") # Derived: delivery_days mask = df['order_delivered_customer_date'].notna() & df['order_purchase_timestamp'].notna() df.loc[mask, 'delivery_days'] = ( (df.loc[mask, 'order_delivered_customer_date'] - df.loc[mask, 'order_purchase_timestamp']) .dt.total_seconds() / 86400 ).round(1) # delivery_delay mask2 = df['order_delivered_customer_date'].notna() & df['order_estimated_delivery_date'].notna() df.loc[mask2, 'delivery_delay_days'] = ( (df.loc[mask2, 'order_delivered_customer_date'] - df.loc[mask2, 'order_estimated_delivery_date']) .dt.total_seconds() / 86400 ).round(1) df['is_late_delivery'] = df['delivery_delay_days'] > 0 return df def clean_order_items(self, df: pd.DataFrame) -> pd.DataFrame: self._log(f"Order items: start {len(df)} rows") df = df.drop_duplicates(subset=['order_id', 'order_item_id']) for c in ['price', 'freight_value']: df[c] = pd.to_numeric(df[c], errors='coerce') neg = (df[c] < 0).sum() if neg > 0: df.loc[df[c] < 0, c] = np.nan self._log(f" {c}: {neg} negatives → NaN") df['total_value'] = df['price'].fillna(0) + df['freight_value'].fillna(0) self._log(f"Order items: {len(df)} rows after clean") return df def clean_customers(self, df: pd.DataFrame) -> pd.DataFrame: self._log(f"Customers: start {len(df)} rows") df = df.drop_duplicates(subset=['customer_id']) if 'customer_city' in df.columns: df['customer_city'] = df['customer_city'].str.strip().str.title() if 'customer_state' in df.columns: df['customer_state'] = df['customer_state'].str.strip().str.upper() self._log(f"Customers: {len(df)} rows after clean") return df def clean_products(self, df: pd.DataFrame) -> pd.DataFrame: self._log(f"Products: start {len(df)} rows") df = df.drop_duplicates(subset=['product_id']) num_cols = ['product_weight_g', 'product_length_cm', 'product_height_cm', 'product_width_cm'] for c in num_cols: if c in df.columns: df[c] = pd.to_numeric(df[c], errors='coerce') median_val = df[c].median() n_miss = df[c].isna().sum() if n_miss > 0: df[c].fillna(median_val, inplace=True) self._log(f" {c}: {n_miss} missing → median ({median_val:.0f})") # Volume if all(c in df.columns for c in ['product_length_cm', 'product_height_cm', 'product_width_cm']): df['product_volume_cm3'] = df['product_length_cm'] * df['product_height_cm'] * df['product_width_cm'] self._log(f"Products: {len(df)} rows after clean") return df def clean_reviews(self, df: pd.DataFrame) -> pd.DataFrame: self._log(f"Reviews: start {len(df)} rows") df = df.drop_duplicates(subset=['review_id']) df['review_score'] = pd.to_numeric(df['review_score'], errors='coerce') df['has_comment'] = df['review_comment_message'].notna() & (df['review_comment_message'].str.len() > 0) df['comment_length'] = df['review_comment_message'].fillna('').str.len() for c in ['review_creation_date', 'review_answer_timestamp']: if c in df.columns: df[c] = pd.to_datetime(df[c], errors='coerce') self._log(f"Reviews: {len(df)} rows after clean") return df def clean_payments(self, df: pd.DataFrame) -> pd.DataFrame: self._log(f"Payments: start {len(df)} rows") df = df.drop_duplicates(subset=['order_id', 'payment_sequential']) df['payment_type'] = df['payment_type'].str.strip().str.lower() df['payment_value'] = pd.to_numeric(df['payment_value'], errors='coerce') self._log(f"Payments: {len(df)} rows after clean") return df # ============================================================================== # 3. OUTLIER TREATMENT # ============================================================================== def treat_outliers(df: pd.DataFrame, columns: list, method: str = 'cap') -> pd.DataFrame: """ Xử lý outliers bằng capping (winsorizing) ở percentile 1% và 99%. Args: df: DataFrame columns: List of numeric columns method: 'cap' (winsorize) or 'remove' """ df = df.copy() for col in columns: if col not in df.columns: continue p01, p99 = df[col].quantile(0.01), df[col].quantile(0.99) n_outliers = ((df[col] < p01) | (df[col] > p99)).sum() if method == 'cap': df[col] = df[col].clip(lower=p01, upper=p99) elif method == 'remove': df = df[(df[col] >= p01) & (df[col] <= p99)] logger.info(f"[OUTLIER] {col}: {n_outliers} outliers treated ({method}) [{p01:.2f}, {p99:.2f}]") return df # ============================================================================== # 4. NORMALIZATION # ============================================================================== def normalize_features(df: pd.DataFrame, columns: list, method: str = 'standard') -> pd.DataFrame: """Chuẩn hóa dữ liệu.""" df = df.copy() scalers = {'minmax': MinMaxScaler(), 'standard': StandardScaler(), 'robust': RobustScaler()} scaler = scalers.get(method, StandardScaler()) valid_cols = [c for c in columns if c in df.columns] df[valid_cols] = scaler.fit_transform(df[valid_cols].fillna(0)) logger.info(f"[NORMALIZE] {method} applied to {len(valid_cols)} columns") return df # ============================================================================== # 5. PCA # ============================================================================== def apply_pca(df: pd.DataFrame, columns: list, n_components: float = 0.95): """PCA với giải thích variance ratio.""" valid_cols = [c for c in columns if c in df.columns] data = df[valid_cols].dropna() scaler = StandardScaler() data_scaled = scaler.fit_transform(data) pca = PCA(n_components=n_components) result = pca.fit_transform(data_scaled) logger.info(f"[PCA] {len(valid_cols)} features → {pca.n_components_} components " f"({sum(pca.explained_variance_ratio_)*100:.1f}% variance)") for i, (var, cum) in enumerate(zip(pca.explained_variance_ratio_, np.cumsum(pca.explained_variance_ratio_))): logger.info(f" PC{i+1}: {var:.4f} ({var*100:.1f}%) | Cumulative: {cum*100:.1f}%") # Loadings loadings = pd.DataFrame(pca.components_.T, index=valid_cols, columns=[f'PC{i+1}' for i in range(pca.n_components_)]) return result, pca, loadings # ============================================================================== # 6. FEATURE ENGINEERING # ============================================================================== def engineer_features(orders: pd.DataFrame, items: pd.DataFrame, products: pd.DataFrame, customers: pd.DataFrame, reviews: pd.DataFrame, payments: pd.DataFrame) -> pd.DataFrame: """Feature Engineering tổng hợp cho phân tích và ML.""" logger.info("[FEATURE] Building feature table...") # Aggregate items per order order_items_agg = items.groupby('order_id').agg( item_count=('order_item_id', 'count'), total_price=('price', 'sum'), total_freight=('freight_value', 'sum'), avg_item_price=('price', 'mean'), max_item_price=('price', 'max'), n_sellers=('seller_id', 'nunique'), n_products=('product_id', 'nunique'), ).reset_index() # Aggregate payments per order order_pay_agg = payments.groupby('order_id').agg( total_payment=('payment_value', 'sum'), n_payment_methods=('payment_type', 'nunique'), max_installments=('payment_installments', 'max'), primary_payment=('payment_type', lambda x: x.mode()[0] if len(x) > 0 else 'unknown'), ).reset_index() # Merge feat = orders[['order_id', 'customer_id', 'order_status', 'order_purchase_timestamp', 'delivery_days', 'delivery_delay_days', 'is_late_delivery']].copy() feat = feat.merge(order_items_agg, on='order_id', how='left') feat = feat.merge(order_pay_agg, on='order_id', how='left') feat = feat.merge(reviews[['order_id', 'review_score', 'has_comment', 'comment_length']], on='order_id', how='left') # Customer features cust_feats = customers[['customer_id', 'customer_city', 'customer_state']].drop_duplicates('customer_id') feat = feat.merge(cust_feats, on='customer_id', how='left') # Time features if 'order_purchase_timestamp' in feat.columns: ts = pd.to_datetime(feat['order_purchase_timestamp']) feat['purchase_hour'] = ts.dt.hour feat['purchase_dayofweek'] = ts.dt.dayofweek feat['purchase_month'] = ts.dt.month feat['is_weekend'] = (ts.dt.dayofweek >= 5).astype(int) # Price features feat['freight_ratio'] = (feat['total_freight'] / feat['total_price'].replace(0, np.nan)).round(4) feat['gmv'] = feat['total_price'].fillna(0) + feat['total_freight'].fillna(0) feat['is_free_shipping'] = (feat['total_freight'] == 0).astype(int) feat['is_multi_item'] = (feat['item_count'] > 1).astype(int) feat['is_multi_seller'] = (feat['n_sellers'] > 1).astype(int) # Satisfaction feat['is_satisfied'] = (feat['review_score'] >= 4).astype(int) # State region mapping region_map = { 'SP': 'Southeast', 'RJ': 'Southeast', 'MG': 'Southeast', 'ES': 'Southeast', 'PR': 'South', 'SC': 'South', 'RS': 'South', 'BA': 'Northeast', 'PE': 'Northeast', 'CE': 'Northeast', 'MA': 'Northeast', 'PB': 'Northeast', 'RN': 'Northeast', 'AL': 'Northeast', 'PI': 'Northeast', 'SE': 'Northeast', 'DF': 'Central-West', 'GO': 'Central-West', 'MT': 'Central-West', 'MS': 'Central-West', 'AM': 'North', 'PA': 'North', 'RO': 'North', 'AC': 'North', 'AP': 'North', 'RR': 'North', 'TO': 'North', } feat['region'] = feat['customer_state'].map(region_map).fillna('Other') logger.info(f"[FEATURE] Feature table: {feat.shape[0]} rows × {feat.shape[1]} columns") return feat # ============================================================================== # 7. VISUALIZATION # ============================================================================== def create_preprocessing_report(feat: pd.DataFrame, output_dir: str): """Tạo visualization cho preprocessing report.""" os.makedirs(output_dir, exist_ok=True) fig, axes = plt.subplots(2, 3, figsize=(18, 10)) # 1. Missing values missing = feat.isnull().sum().sort_values(ascending=False).head(15) missing = missing[missing > 0] if len(missing) > 0: axes[0, 0].barh(range(len(missing)), missing.values, color='#e74c3c') axes[0, 0].set_yticks(range(len(missing))) axes[0, 0].set_yticklabels(missing.index, fontsize=8) axes[0, 0].set_title('Missing Values (Top 15)') axes[0, 0].set_xlabel('Count') else: axes[0, 0].text(0.5, 0.5, 'No missing values', ha='center', va='center', fontsize=14) axes[0, 0].set_title('Missing Values') # 2. Price distribution if 'total_price' in feat.columns: data = feat['total_price'].dropna() axes[0, 1].hist(data.clip(upper=data.quantile(0.99)), bins=50, color='#3498db', alpha=0.7) axes[0, 1].axvline(data.median(), color='red', linestyle='--', label=f'Median={data.median():.0f}') axes[0, 1].set_title('Price Distribution') axes[0, 1].legend() # 3. Delivery days distribution if 'delivery_days' in feat.columns: data = feat['delivery_days'].dropna() axes[0, 2].hist(data.clip(upper=data.quantile(0.99)), bins=50, color='#2ecc71', alpha=0.7) axes[0, 2].axvline(data.median(), color='red', linestyle='--', label=f'Median={data.median():.0f}') axes[0, 2].set_title('Delivery Days Distribution') axes[0, 2].legend() # 4. Review score distribution if 'review_score' in feat.columns: feat['review_score'].dropna().value_counts().sort_index().plot( kind='bar', ax=axes[1, 0], color=['#e74c3c', '#f39c12', '#f1c40f', '#2ecc71', '#27ae60']) axes[1, 0].set_title('Review Score Distribution') axes[1, 0].set_xlabel('Score') # 5. Region distribution if 'region' in feat.columns: feat['region'].value_counts().plot(kind='bar', ax=axes[1, 1], color='#9b59b6', alpha=0.7) axes[1, 1].set_title('Orders by Region') axes[1, 1].tick_params(axis='x', rotation=45) # 6. Correlation heatmap (top features) num_cols = ['total_price', 'total_freight', 'delivery_days', 'review_score', 'item_count', 'freight_ratio'] valid_cols = [c for c in num_cols if c in feat.columns] if len(valid_cols) >= 3: corr = feat[valid_cols].corr() im = axes[1, 2].imshow(corr, cmap='RdBu_r', vmin=-1, vmax=1) axes[1, 2].set_xticks(range(len(valid_cols))) axes[1, 2].set_yticks(range(len(valid_cols))) axes[1, 2].set_xticklabels(valid_cols, fontsize=7, rotation=45, ha='right') axes[1, 2].set_yticklabels(valid_cols, fontsize=7) axes[1, 2].set_title('Correlation Matrix') for i in range(len(valid_cols)): for j in range(len(valid_cols)): axes[1, 2].text(j, i, f'{corr.iloc[i, j]:.2f}', ha='center', va='center', fontsize=7) plt.suptitle('Data Preprocessing Report - Olist E-commerce', fontsize=14, fontweight='bold') plt.tight_layout() path = os.path.join(output_dir, 'preprocessing_report.png') plt.savefig(path, dpi=150, bbox_inches='tight') plt.close() logger.info(f"[VIZ] Saved: {path}") # ============================================================================== # MAIN PIPELINE # ============================================================================== def main(): parser = argparse.ArgumentParser(description='Olist Data Preprocessing Pipeline') parser.add_argument('--data-dir', type=str, default='./data/raw') parser.add_argument('--output-dir', type=str, default='./data/processed') args = parser.parse_args() os.makedirs(args.output_dir, exist_ok=True) # ---- Load data ---- logger.info("Loading Olist CSV files...") tables = {} files = { 'orders': 'olist_orders_dataset.csv', 'items': 'olist_order_items_dataset.csv', 'customers': 'olist_customers_dataset.csv', 'products': 'olist_products_dataset.csv', 'sellers': 'olist_sellers_dataset.csv', 'payments': 'olist_order_payments_dataset.csv', 'reviews': 'olist_order_reviews_dataset.csv', } for name, fname in files.items(): path = os.path.join(args.data_dir, fname) if os.path.exists(path): tables[name] = pd.read_csv(path) logger.info(f" Loaded {name}: {tables[name].shape}") else: logger.warning(f" File not found: {path}") if not tables: logger.error("No data files found. Please download Olist dataset from Kaggle.") sys.exit(1) # ---- 1. Quality Assessment ---- qa = DataQualityAssessor() for name, df in tables.items(): qa.assess(df, name) qa.print_report() # Save quality report with open(os.path.join(args.output_dir, 'quality_report.json'), 'w') as f: json.dump(qa.report, f, indent=2, default=str) # ---- 2. Clean data ---- cleaner = OlistDataCleaner() orders = cleaner.clean_orders(tables['orders']) items = cleaner.clean_order_items(tables['items']) customers = cleaner.clean_customers(tables['customers']) products = cleaner.clean_products(tables['products']) reviews = cleaner.clean_reviews(tables['reviews']) payments = cleaner.clean_payments(tables['payments']) # ---- 3. Outlier treatment ---- items = treat_outliers(items, ['price', 'freight_value'], method='cap') orders = treat_outliers(orders, ['delivery_days'], method='cap') # ---- 4. Feature Engineering ---- features = engineer_features(orders, items, products, customers, reviews, payments) # ---- 5. PCA on product features ---- pca_cols = ['total_price', 'total_freight', 'delivery_days', 'item_count', 'freight_ratio'] pca_result, pca_model, loadings = apply_pca(features, pca_cols) logger.info(f"PCA Loadings:\n{loadings}") # ---- 6. Save cleaned data ---- orders.to_parquet(os.path.join(args.output_dir, 'clean_orders.parquet'), index=False) items.to_parquet(os.path.join(args.output_dir, 'clean_order_items.parquet'), index=False) customers.to_parquet(os.path.join(args.output_dir, 'clean_customers.parquet'), index=False) products.to_parquet(os.path.join(args.output_dir, 'clean_products.parquet'), index=False) reviews.to_parquet(os.path.join(args.output_dir, 'clean_reviews.parquet'), index=False) payments.to_parquet(os.path.join(args.output_dir, 'clean_payments.parquet'), index=False) features.to_parquet(os.path.join(args.output_dir, 'feature_table.parquet'), index=False) logger.info(f"All cleaned data saved to {args.output_dir}/") # ---- 7. Visualization ---- create_preprocessing_report(features, args.output_dir) # ---- Summary ---- print(f"\n{'='*70}") print(f" PREPROCESSING PIPELINE COMPLETE") print(f"{'='*70}") print(f" Cleaned tables: {', '.join(['orders', 'items', 'customers', 'products', 'reviews', 'payments'])}") print(f" Feature table: {features.shape[0]:,} rows × {features.shape[1]} columns") print(f" Output: {args.output_dir}/") print(f"{'='*70}") if __name__ == '__main__': main()