Update Mimic4Dataset.py
Browse files- Mimic4Dataset.py +5 -8
Mimic4Dataset.py
CHANGED
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@@ -153,11 +153,8 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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timeW = config['timeWindow']
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self.timeW=int(timeW.split()[1])
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self.bucket = config['timebucket']
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else :
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self.wind =1
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print(self.wind)
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self.data_icu = config['icu_no_icu']=='ICU'
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if self.data_icu:
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@@ -447,12 +444,12 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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demo=demo.drop(['label'],axis=1)
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X= generate_ml(dyn_df,cond_df,demo,concat_cols,self.concat)
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X=X.values.tolist()[0]
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size_concat = self.size_cond+ self.size_proc *
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size_aggreg = self.size_cond+ self.size_proc + self.size_meds+ self.size_out+ self.size_chart+ self.size_lab + 4
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print('x: ', len(X))
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print('size_concat: ', size_concat)
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print('
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if ((self.concat and len(X)==size_concat) or ((not self.concat) and len(X)==size_aggreg)):
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yield int(i), {
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"label": label,
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timeW = config['timeWindow']
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self.timeW=int(timeW.split()[1])
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self.bucket = config['timebucket']
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self.PredW = config['predW']
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self.data_icu = config['icu_no_icu']=='ICU'
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if self.data_icu:
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demo=demo.drop(['label'],axis=1)
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X= generate_ml(dyn_df,cond_df,demo,concat_cols,self.concat)
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X=X.values.tolist()[0]
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interv = ((self.timeW + self.PredW)//self.bucket) + (self.config.name != 'Mortality')
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size_concat = self.size_cond+ self.size_proc * interv + self.size_meds * interv+ self.size_out * interv+ self.size_chart *interv+ self.size_lab * interv + 4
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size_aggreg = self.size_cond+ self.size_proc + self.size_meds+ self.size_out+ self.size_chart+ self.size_lab + 4
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print('x: ', len(X))
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print('size_concat: ', size_concat)
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print('interv: ', interv)
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if ((self.concat and len(X)==size_concat) or ((not self.concat) and len(X)==size_aggreg)):
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yield int(i), {
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"label": label,
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