Update data_generation_icu_modify.py

data_generation_icu_modify.py

@@ -21,8 +21,8 @@ class Generator():
         self.impute=impute
         self.task = task
         self.data = self.generate_adm()
-        if not os.path.exists("./data/dict/"+self.cohort_output):
-            os.makedirs("./data/dict/"+self.cohort_output)
+        if not os.path.exists("./data/dict/"+self.task):
+            os.makedirs("./data/dict/"+self.task)
         print("[ READ COHORT ]")
         
         self.generate_feat()
@@ -529,53 +529,53 @@ class Generator():
         ######SAVE DICTIONARIES##############
         metaDic={'Cond':{},'Proc':{},'Med':{},'Out':{},'Chart':{},'LOS':{}}
         metaDic['LOS']=los
-        with open("./data/dict/dataDic", 'wb') as fp:
+        with open("./data/dict/"+self.task+"/dataDic", 'wb') as fp:
             pickle.dump(dataDic, fp)
 
-        with open("./data/dict/hadmDic", 'wb') as fp:
+        with open("./data/dict/"+self.task+"/hadmDic", 'wb') as fp:
             pickle.dump(self.hids, fp)
         
-        with open("./data/dict/ethVocab", 'wb') as fp:
+        with open("./data/dict/"+self.task+"/ethVocab", 'wb') as fp:
             pickle.dump(list(self.data['ethnicity'].unique()), fp)
             self.eth_vocab = self.data['ethnicity'].nunique()
             
-        with open("./data/dict/ageVocab", 'wb') as fp:
+        with open("./data/dict/"+self.task+"/ageVocab", 'wb') as fp:
             pickle.dump(list(self.data['Age'].unique()), fp)
             self.age_vocab = self.data['Age'].nunique()
             
-        with open("./data/dict/insVocab", 'wb') as fp:
+        with open("./data/dict/"+self.task+"/insVocab", 'wb') as fp:
             pickle.dump(list(self.data['insurance'].unique()), fp)
             self.ins_vocab = self.data['insurance'].nunique()
             
         if(self.feat_med):
-            with open("./data/dict/medVocab", 'wb') as fp:
+            with open("./data/dict/"+self.task+"/medVocab", 'wb') as fp:
                 pickle.dump(list(meds['itemid'].unique()), fp)
             self.med_vocab = meds['itemid'].nunique()
             metaDic['Med']=self.med_per_adm
             
         if(self.feat_out):
-            with open("./data/dict/outVocab", 'wb') as fp:
+            with open("./data/dict/"+self.task+"/outVocab", 'wb') as fp:
                 pickle.dump(list(out['itemid'].unique()), fp)
             self.out_vocab = out['itemid'].nunique()
             metaDic['Out']=self.out_per_adm
             
         if(self.feat_chart):
-            with open("./data/dict/chartVocab", 'wb') as fp:
+            with open("./data/dict/"+self.task+"/chartVocab", 'wb') as fp:
                 pickle.dump(list(chart['itemid'].unique()), fp)
             self.chart_vocab = chart['itemid'].nunique()
             metaDic['Chart']=self.chart_per_adm
         
         if(self.feat_cond):
-            with open("./data/dict/condVocab", 'wb') as fp:
+            with open("./data/dict/"+self.task+"/condVocab", 'wb') as fp:
                 pickle.dump(list(self.cond['new_icd_code'].unique()), fp)
             self.cond_vocab = self.cond['new_icd_code'].nunique()
             metaDic['Cond']=self.cond_per_adm
         
         if(self.feat_proc):    
-            with open("./data/dict/procVocab", 'wb') as fp:
+            with open("./data/dict/"+self.task+"/procVocab", 'wb') as fp:
                 pickle.dump(list(proc['itemid'].unique()), fp)
             self.proc_vocab = proc['itemid'].nunique()
             metaDic['Proc']=self.proc_per_adm
             
-        with open("./data/dict/metaDic", 'wb') as fp:
+        with open("./data/dict/"+self.task+"/metaDic", 'wb') as fp:
             pickle.dump(metaDic, fp)