Update Mimic4Dataset.py
Browse files- Mimic4Dataset.py +3 -11
Mimic4Dataset.py
CHANGED
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@@ -67,7 +67,6 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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self.test_size = kwargs.pop("test_size",0.2)
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self.val_size = kwargs.pop("val_size",0.1)
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self.generate_cohort = kwargs.pop("generate_cohort",True)
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self.param = kwargs.pop("param",0)
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if self.encoding == 'concat':
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self.concat = True
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@@ -407,6 +406,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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{
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"label": datasets.ClassLabel(num_classes=2,names=["0", "1"]),
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"features" : datasets.Sequence(datasets.Value("float32")),
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}
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)
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return datasets.DatasetInfo(
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@@ -470,6 +470,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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yield int(i), {
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"label": label,
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"features": X,
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}
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######################################################DEEP###############################################################
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@@ -544,16 +545,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
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for key, data in dico.items():
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cond_text,chart_text,meds_text,proc_text,out_text = generate_text(data,icd,items, self.feat_cond, self.feat_chart, self.feat_meds, self.feat_proc, self.feat_out)
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text= cond_text+chart_text+meds_text+proc_text+out_text
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elif self.param==2:
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text= cond_text
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elif self.param==3:
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text=cond_text+ chart_text
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elif self.param==4:
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text=cond_text+ chart_text+meds_text
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elif self.param==5:
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text=cond_text+ chart_text+meds_text+proc_text
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yield int(key),{
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'label' : data['label'],
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self.test_size = kwargs.pop("test_size",0.2)
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self.val_size = kwargs.pop("val_size",0.1)
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self.generate_cohort = kwargs.pop("generate_cohort",True)
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if self.encoding == 'concat':
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self.concat = True
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{
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"label": datasets.ClassLabel(num_classes=2,names=["0", "1"]),
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"features" : datasets.Sequence(datasets.Value("float32")),
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"features_names" : datasets.Sequence(datasets.Value("string")),
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}
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)
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return datasets.DatasetInfo(
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yield int(i), {
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"label": label,
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"features": X,
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"features_names" : feats
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}
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######################################################DEEP###############################################################
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for key, data in dico.items():
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cond_text,chart_text,meds_text,proc_text,out_text = generate_text(data,icd,items, self.feat_cond, self.feat_chart, self.feat_meds, self.feat_proc, self.feat_out)
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text= cond_text+chart_text+meds_text+proc_text+out_text
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yield int(key),{
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'label' : data['label'],
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