Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -19,9 +19,9 @@ mimic path should have this form : "absolute/path/to/mimic4data/mimiciv/2.2"
 _HOMEPAGE = "https://huggingface.co/datasets/thbndi/Mimic4Dataset"
 _CITATION = "https://proceedings.mlr.press/v193/gupta22a.html"
 _URL = "https://github.com/healthylaife/MIMIC-IV-Data-Pipeline"
-_DATA_GEN = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/data_generation_icu_modify.py'
-_COHORT = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/cohort.py'
-_CONFIG_URLS = {'los' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/blob/resolve/config/los.config',
+_DATA_GEN = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/blob/main/data_generation_icu_modify.py'
+_COHORT = 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/blob/main/cohort.py'
+_CONFIG_URLS = {'los' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/blob/main/config/los.config',
                 'mortality' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/los.config',
                 'phenotype' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/phenotype.config',
                 'readmission' : 'https://huggingface.co/datasets/thbndi/Mimic4Dataset/resolve/main/config/readmission.config'
@@ -152,8 +152,9 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
             file_path, head = urlretrieve(self.config_path)
         else :
             file_path = self.config_path
-        
-        if not os.path.exists(path_bench+'/config/'+self.config_path.split('/')[-1]):
+        conf=path_bench+'/config/'+self.config_path.split('/')[-1]+'.config'
+        print(conf)
+        if not os.path.exists(path_bench+'/config/'+self.config_path.split('/')[-1]+'.config'):
             shutil.move(file_path, path_bench+'/config')
         
 
@@ -168,9 +169,9 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         data_dir = path_bench + "/data/dataDic"
         sys.path.append(path_bench)
         config = self.config_path.split('/')[-1]
-        script = 'python'+' '+ path_bench+'/cohort.py '+ self.config.name +" "+ self.mimic_path+ " "+path_bench+ " "+config
-        #print(script)
-        os.system(script)
+        script = 'python cohort.py '+ self.config.name +" "+ self.mimic_path+ " "+path_bench+ " "+config
+        print(script)
+        #os.system(script)
         return [
             datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
         ]