Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -12,9 +12,6 @@ import yaml
 from datasets import hf
 from .dataset_utils import create_vocab,gender_vocab,vocab, concat_data, generate_deep, generate_ml
 from .task_cohort import create_cohort, check_config_file
-hf.download("day_intervals_cohort_v22.py", save_path="./")
-
-
 
 
 
@@ -31,6 +28,10 @@ _HOMEPAGE = "https://huggingface.co/datasets/thbndi/Mimic4Dataset"
 
 _CITATION = "https://proceedings.mlr.press/v193/gupta22a.html"
 _GIT_URL = "https://github.com/healthylaife/MIMIC-IV-Data-Pipeline"
+
+_DATA_GEN = f"{_BASE_URL}/data_generation_icu_modify.py"
+_DATA_GEN_HOSP= f"{_BASE_URL}/data_generation_modify.py"
+_DAY_INT= f"{_BASE_URL}/day_intervals_cohort_v22.py"
 _CONFIG_URLS = {'los' : f"{_BASE_URL}/config/los.config",
                 'mortality' : f"{_BASE_URL}/config/mortality.config",
                 'phenotype' : f"{_BASE_URL}/config/phenotype.config",
@@ -158,6 +159,20 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
             self.feat_cond, self.feat_lab, self.feat_proc, self.feat_meds, self.feat_chart, self.out = config['diagnosis'], config['lab'], config['proc'],  config['meds'], False, False
             self.feat_out = False
             self.feat_chart = False
+
+        
+        #####################downloads modules from hub
+        if not os.path.exists('./model/data_generation_icu_modify.py'):
+            file_path, head = urlretrieve(_DATA_GEN, "data_generation_icu_modify.py")
+            shutil.move(file_path, './model')
+
+        if not os.path.exists('./model/data_generation_modify.py'):
+            file_path, head = urlretrieve(_DATA_GEN_HOSP, "data_generation_modify.py")
+            shutil.move(file_path, './model')
+
+        if not os.path.exists('./preprocessing/day_intervals_preproc/day_intervals_cohort_v22.py'):
+            file_path, head = urlretrieve(_DAY_INT, "day_intervals_cohort_v22.py")
+            shutil.move(file_path, './preprocessing/day_intervals_preproc')
             
         data_dir = "./data/dict/"+self.config.name.replace(" ","_")+"/dataDic"
         sys.path.append(path_bench)