Update readme.md
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readme.md
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@@ -12,20 +12,20 @@ load_dataset('thbndi/Mimic4Dataset', task, mimic_path=mimic_data, config_path=co
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## Arguments
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1. `task` (string
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- Description: Specifies the task you want to perform with the dataset.
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- Default: "Mortality"
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- Note: Possible Values : 'Phenotype', 'Length of Stay', 'Readmission', 'Mortality'
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2. `mimic_path` (string):
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- Description: Complete path to the Mimic-IV raw data on user's machine.
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- Note: You need to provide the appropriate path where the Mimic-IV data is stored.
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3. `config_path` (string) optionnal:
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- Description: Path to the configuration file for the cohort generation choices (more infos in '/config/readme.md').
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- Default: Configuration file provided in the 'config' folder.
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4. `encoding` (string
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- Description: Data encoding option for the features.
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- Options: "concat", "aggreg", "tensor", "raw", "text"
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- Default: "concat"
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@@ -36,17 +36,17 @@ load_dataset('thbndi/Mimic4Dataset', task, mimic_path=mimic_data, config_path=co
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- "raw": Provide cohort from the pipeline without any encoding for custom data processing.
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- "text": Represents diagnoses as text suitable for BERT or other similar text-based models.
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5. `generate_cohort` (bool
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- Description: Determines whether to generate a new cohort from Mimic-IV data.
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- Default: True
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- Note: Set it to True to generate a cohort, or False to skip cohort generation.
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6. `val_size`, 'test_size' (float):
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- Description: Proportion of the dataset used for validation during training.
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- Default: 0.1 for validation size and 0.2 for testing size.
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- Note: Can be set to 0.
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7. `cache_dir` (string):
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- Description: Directory where the processed dataset will be cached.
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- Note: Providing a cache directory for each encoding type can avoid errors when changing the encoding type.
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## Arguments
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+
1. `task` (string) :
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- Description: Specifies the task you want to perform with the dataset.
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| 17 |
- Default: "Mortality"
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| 18 |
- Note: Possible Values : 'Phenotype', 'Length of Stay', 'Readmission', 'Mortality'
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+
2. `mimic_path` (string) :
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- Description: Complete path to the Mimic-IV raw data on user's machine.
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- Note: You need to provide the appropriate path where the Mimic-IV data is stored.
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| 23 |
|
| 24 |
+
3. `config_path` (string) optionnal :
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- Description: Path to the configuration file for the cohort generation choices (more infos in '/config/readme.md').
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- Default: Configuration file provided in the 'config' folder.
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+
4. `encoding` (string) optionnal :
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- Description: Data encoding option for the features.
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- Options: "concat", "aggreg", "tensor", "raw", "text"
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- Default: "concat"
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- "raw": Provide cohort from the pipeline without any encoding for custom data processing.
|
| 37 |
- "text": Represents diagnoses as text suitable for BERT or other similar text-based models.
|
| 38 |
|
| 39 |
+
5. `generate_cohort` (bool) optionnal :
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- Description: Determines whether to generate a new cohort from Mimic-IV data.
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- Default: True
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- Note: Set it to True to generate a cohort, or False to skip cohort generation.
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+
6. `val_size`, 'test_size' (float) optionnal :
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- Description: Proportion of the dataset used for validation during training.
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- Default: 0.1 for validation size and 0.2 for testing size.
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- Note: Can be set to 0.
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+
7. `cache_dir` (string) optionnal :
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- Description: Directory where the processed dataset will be cached.
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- Note: Providing a cache directory for each encoding type can avoid errors when changing the encoding type.
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| 52 |
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