Update dataset_utils.py

dataset_utils.py

@@ -85,6 +85,11 @@ def concat_data(data,interval,feat_cond,feat_proc,feat_out,feat_chart,feat_meds,
     charts = data['Chart']
     cond= data['Cond']['fids']
 
+    proc_df=pd.DataFrame()
+    out_df=pd.DataFrame()
+    cond_df=pd.DataFrame()
+    chart_df=pd.DataFrame()
+    meds_df=pd.DataFrame()
     #demographic
     demo=pd.DataFrame(columns=['Age','gender','ethnicity','label','insurance'])
     new_row = {'Age': data['age'], 'gender': data['gender'], 'ethnicity': data['ethnicity'], 'label': data['label'], 'insurance': data['insurance']}
@@ -260,7 +265,7 @@ def generate_text(data,icd,items,feat_cond,feat_chart,feat_meds, feat_proc, feat
         conds = data.get('Cond', {}).get('fids', [])
         conds=[icd[icd['icd_code'] == code]['long_title'].to_string(index=False) for code in conds if not icd[icd['icd_code'] == code].empty]
         cond_text = '; '.join(conds)
-        cond_text = f"The patient {ethn} {gender}, {age} years old, covered by {ins} was diagnosed with {cond_text}. " if cond_text else ''
+        cond_text = f"The patient ({ethn} {gender}, {age} years old, covered by {ins}) was diagnosed with {cond_text}. " if cond_text else ''
     else:
         cond_text = ''