Update Mimic4Dataset.py

Mimic4Dataset.py

@@ -29,7 +29,7 @@ _HOMEPAGE = "https://huggingface.co/datasets/thbndi/Mimic4Dataset"
 _CITATION = "https://proceedings.mlr.press/v193/gupta22a.html"
 _GIT_URL = "https://github.com/healthylaife/MIMIC-IV-Data-Pipeline"
 
-_ICD_CODE = f"{_BASE_URL}/icd10.txt"
+#_ICD_CODE = f"{_BASE_URL}/icd10.txt"
 _DATA_GEN = f"{_BASE_URL}/data_generation_icu_modify.py"
 _DATA_GEN_HOSP= f"{_BASE_URL}/data_generation_modify.py"
 _DAY_INT= f"{_BASE_URL}/day_intervals_cohort_v22.py"
@@ -166,9 +166,9 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
 
         
         #####################downloads modules from hub
-        if not os.path.exists('./icd10.txt'):
-            file_path, head = urlretrieve(_ICD_CODE, "icd10.txt")
-            shutil.move(file_path, './')    
+        #if not os.path.exists('./icd10.txt'):
+        #    file_path, head = urlretrieve(_ICD_CODE, "icd10.txt")
+        #    shutil.move(file_path, './')    
                 
         if not os.path.exists('./model/data_generation_icu_modify.py'):
             file_path, head = urlretrieve(_DATA_GEN, "data_generation_icu_modify.py")
@@ -522,7 +522,7 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         )
 
     def _generate_examples_text(self, filepath):
-        icd = pd.read_csv('icd10.txt',names=['code','description'],sep='\t')
+        icd = pd.read_csv(self.mimic_path+'/hosp/d_icd_diagnoses.csv.gz',compression='gzip', header=0)
         items= pd.read_csv(self.mimic_path+'/icu/d_items.csv.gz',compression='gzip', header=0)
         with open(filepath, 'rb') as fp:
             dico = pickle.load(fp)