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Mimic4Dataset

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thbndi commited on Jun 16, 2023

Commit

fbba5f2

·

1 Parent(s): 1fc3b9c

Update Mimic4Dataset.py

Files changed (1) hide show

Mimic4Dataset.py +3 -2

Mimic4Dataset.py CHANGED Viewed

@@ -167,8 +167,9 @@ class Mimic4Dataset(datasets.GeneratorBasedBuilder):
         data_dir = path_bench + "/data/dataDic"
         sys.path.append(path_bench)
-        import cohort
-        cohort.task_cohort(self.config.name,self.mimic_path, path_bench, self.config_path)
         return [
             datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
         ]

         data_dir = path_bench + "/data/dataDic"
         sys.path.append(path_bench)
+        script = 'python cohort.py '+ self.config.name +" "+ self.mimic_path+ " "+path_bench+ " "+self.config_path
+        print(script)
+        #os.system(script)
         return [
             datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": data_dir}),
         ]