#!/usr/bin/env Rscript file_arg <- grep("^--file=", commandArgs(FALSE), value = TRUE) script_path <- sub("^--file=", "", file_arg[[1]]) source(file.path(dirname(normalizePath(script_path, mustWork = FALSE)), "common.R")) root <- set_replication_root() args <- commandArgs(trailingOnly = TRUE) if (length(args) == 0) { stop("Pass one or more outer-sequence row indices. Example: Rscript code/02_run_main_ate_optional.R 1") } resave_tfrecords <- parse_env_flag("IMAGEDECONFOUND_RESAVE_TFRECORDS", default = FALSE) tfrecord_home <- resolve_external_path("IMAGEDECONFOUND_TFRECORD_HOME", "external_artifacts/tfrecords") image_root <- resolve_external_path("IMAGEDECONFOUND_IMAGE_ROOT", "external_artifacts/images/dhs_tifs_5k_3yr") ensure_dir(tfrecord_home) if (!resave_tfrecords) { tfrecord_n <- length(list.files(tfrecord_home, pattern = "\\.tfrecord$", full.names = TRUE)) if (tfrecord_n == 0) { stop( "No TFRecord files were found in ", tfrecord_home, ". ", "Either place the required TFRecords there or rerun with IMAGEDECONFOUND_RESAVE_TFRECORDS=true ", "after downloading the excluded image files locally." ) } } else if (!dir.exists(image_root)) { stop( "IMAGEDECONFOUND_RESAVE_TFRECORDS=true but the image directory does not exist: ", image_root ) } run_replication_script( "code/lib/call_CI_Conf_5k_3yr.R", overrides = list( SAVE_RESULTS_FOLDER_OVERRIDE = "per_run_csv/Epoch5EarlyStopNewTreatDefLabelS_Run2", X_APPROACH_OPTIONS_OVERRIDE = c( "noX", "onlyX", "onlyFE", "onlyXandFE", "withX", "withFE", "withXandFE" ), REQUIRE_EXPLICIT_OUTER_SEQ = TRUE, TFRECORD_HOME_OVERRIDE = tfrecord_home, IMAGE_ROOT_OVERRIDE = image_root, RESAVE_TFRECORDS_OVERRIDE = resave_tfrecords ) )