| | __author__ = 'tsungyi' |
| |
|
| | import numpy as np |
| | import datetime |
| | import time |
| | from collections import defaultdict |
| | from . import mask as maskUtils |
| | import copy |
| |
|
| | class COCOeval: |
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| | def __init__(self, cocoGt=None, cocoDt=None, iouType='segm'): |
| | ''' |
| | Initialize CocoEval using coco APIs for gt and dt |
| | :param cocoGt: coco object with ground truth annotations |
| | :param cocoDt: coco object with detection results |
| | :return: None |
| | ''' |
| | if not iouType: |
| | print('iouType not specified. use default iouType segm') |
| | self.cocoGt = cocoGt |
| | self.cocoDt = cocoDt |
| | self.evalImgs = defaultdict(list) |
| | self.eval = {} |
| | self._gts = defaultdict(list) |
| | self._dts = defaultdict(list) |
| | self.params = Params(iouType=iouType) |
| | self._paramsEval = {} |
| | self.stats = [] |
| | self.ious = {} |
| | if not cocoGt is None: |
| | self.params.imgIds = sorted(cocoGt.getImgIds()) |
| | self.params.catIds = sorted(cocoGt.getCatIds()) |
| |
|
| |
|
| | def _prepare(self): |
| | ''' |
| | Prepare ._gts and ._dts for evaluation based on params |
| | :return: None |
| | ''' |
| | def _toMask(anns, coco): |
| | |
| | for ann in anns: |
| | rle = coco.annToRLE(ann) |
| | ann['segmentation'] = rle |
| | p = self.params |
| | if p.useCats: |
| | gts=self.cocoGt.loadAnns(self.cocoGt.getAnnIds(imgIds=p.imgIds, catIds=p.catIds)) |
| | dts=self.cocoDt.loadAnns(self.cocoDt.getAnnIds(imgIds=p.imgIds, catIds=p.catIds)) |
| | else: |
| | gts=self.cocoGt.loadAnns(self.cocoGt.getAnnIds(imgIds=p.imgIds)) |
| | dts=self.cocoDt.loadAnns(self.cocoDt.getAnnIds(imgIds=p.imgIds)) |
| |
|
| | |
| | if p.iouType == 'segm': |
| | _toMask(gts, self.cocoGt) |
| | _toMask(dts, self.cocoDt) |
| | |
| | for gt in gts: |
| | gt['ignore'] = gt['ignore'] if 'ignore' in gt else 0 |
| | gt['ignore'] = 'iscrowd' in gt and gt['iscrowd'] |
| | if p.iouType == 'keypoints': |
| | gt['ignore'] = (gt['num_keypoints'] == 0) or gt['ignore'] |
| | self._gts = defaultdict(list) |
| | self._dts = defaultdict(list) |
| | for gt in gts: |
| | self._gts[gt['image_id'], gt['category_id']].append(gt) |
| | for dt in dts: |
| | self._dts[dt['image_id'], dt['category_id']].append(dt) |
| | self.evalImgs = defaultdict(list) |
| | self.eval = {} |
| |
|
| | def evaluate(self): |
| | ''' |
| | Run per image evaluation on given images and store results (a list of dict) in self.evalImgs |
| | :return: None |
| | ''' |
| | tic = time.time() |
| | print('Running per image evaluation...') |
| | p = self.params |
| | |
| | if not p.useSegm is None: |
| | p.iouType = 'segm' if p.useSegm == 1 else 'bbox' |
| | print('useSegm (deprecated) is not None. Running {} evaluation'.format(p.iouType)) |
| | print('Evaluate annotation type *{}*'.format(p.iouType)) |
| | p.imgIds = list(np.unique(p.imgIds)) |
| | if p.useCats: |
| | p.catIds = list(np.unique(p.catIds)) |
| | p.maxDets = sorted(p.maxDets) |
| | self.params=p |
| |
|
| | self._prepare() |
| | |
| | catIds = p.catIds if p.useCats else [-1] |
| |
|
| | if p.iouType == 'segm' or p.iouType == 'bbox': |
| | computeIoU = self.computeIoU |
| | elif p.iouType == 'keypoints': |
| | computeIoU = self.computeOks |
| | self.ious = {(imgId, catId): computeIoU(imgId, catId) \ |
| | for imgId in p.imgIds |
| | for catId in catIds} |
| |
|
| | evaluateImg = self.evaluateImg |
| | maxDet = p.maxDets[-1] |
| | self.evalImgs = [evaluateImg(imgId, catId, areaRng, maxDet) |
| | for catId in catIds |
| | for areaRng in p.areaRng |
| | for imgId in p.imgIds |
| | ] |
| | self._paramsEval = copy.deepcopy(self.params) |
| | toc = time.time() |
| | print('DONE (t={:0.2f}s).'.format(toc-tic)) |
| |
|
| | def computeIoU(self, imgId, catId): |
| | p = self.params |
| | if p.useCats: |
| | gt = self._gts[imgId,catId] |
| | dt = self._dts[imgId,catId] |
| | else: |
| | gt = [_ for cId in p.catIds for _ in self._gts[imgId,cId]] |
| | dt = [_ for cId in p.catIds for _ in self._dts[imgId,cId]] |
| | if len(gt) == 0 and len(dt) ==0: |
| | return [] |
| | inds = np.argsort([-d['score'] for d in dt], kind='mergesort') |
| | dt = [dt[i] for i in inds] |
| | if len(dt) > p.maxDets[-1]: |
| | dt=dt[0:p.maxDets[-1]] |
| |
|
| | if p.iouType == 'segm': |
| | g = [g['segmentation'] for g in gt] |
| | d = [d['segmentation'] for d in dt] |
| | elif p.iouType == 'bbox': |
| | g = [g['bbox'] for g in gt] |
| | d = [d['bbox'] for d in dt] |
| | else: |
| | raise Exception('unknown iouType for iou computation') |
| |
|
| | |
| | iscrowd = [int(o['iscrowd']) for o in gt] |
| | ious = maskUtils.iou(d,g,iscrowd) |
| | return ious |
| |
|
| | def computeOks(self, imgId, catId): |
| | p = self.params |
| | |
| | gts = self._gts[imgId, catId] |
| | dts = self._dts[imgId, catId] |
| | inds = np.argsort([-d['score'] for d in dts], kind='mergesort') |
| | dts = [dts[i] for i in inds] |
| | if len(dts) > p.maxDets[-1]: |
| | dts = dts[0:p.maxDets[-1]] |
| | |
| | if len(gts) == 0 or len(dts) == 0: |
| | return [] |
| | ious = np.zeros((len(dts), len(gts))) |
| | sigmas = p.kpt_oks_sigmas |
| | vars = (sigmas * 2)**2 |
| | k = len(sigmas) |
| | |
| | for j, gt in enumerate(gts): |
| | |
| | g = np.array(gt['keypoints']) |
| | xg = g[0::3]; yg = g[1::3]; vg = g[2::3] |
| | k1 = np.count_nonzero(vg > 0) |
| | bb = gt['bbox'] |
| | x0 = bb[0] - bb[2]; x1 = bb[0] + bb[2] * 2 |
| | y0 = bb[1] - bb[3]; y1 = bb[1] + bb[3] * 2 |
| | for i, dt in enumerate(dts): |
| | d = np.array(dt['keypoints']) |
| | xd = d[0::3]; yd = d[1::3] |
| | if k1>0: |
| | |
| | dx = xd - xg |
| | dy = yd - yg |
| | else: |
| | |
| | z = np.zeros((k)) |
| | dx = np.max((z, x0-xd),axis=0)+np.max((z, xd-x1),axis=0) |
| | dy = np.max((z, y0-yd),axis=0)+np.max((z, yd-y1),axis=0) |
| | e = (dx**2 + dy**2) / vars / (gt['area']+np.spacing(1)) / 2 |
| | if k1 > 0: |
| | e=e[vg > 0] |
| | ious[i, j] = np.sum(np.exp(-e)) / e.shape[0] |
| | return ious |
| |
|
| | def evaluateImg(self, imgId, catId, aRng, maxDet): |
| | ''' |
| | perform evaluation for single category and image |
| | :return: dict (single image results) |
| | ''' |
| | p = self.params |
| | if p.useCats: |
| | gt = self._gts[imgId,catId] |
| | dt = self._dts[imgId,catId] |
| | else: |
| | gt = [_ for cId in p.catIds for _ in self._gts[imgId,cId]] |
| | dt = [_ for cId in p.catIds for _ in self._dts[imgId,cId]] |
| | if len(gt) == 0 and len(dt) ==0: |
| | return None |
| |
|
| | for g in gt: |
| | if g['ignore'] or (g['area']<aRng[0] or g['area']>aRng[1]): |
| | g['_ignore'] = 1 |
| | else: |
| | g['_ignore'] = 0 |
| |
|
| | |
| | gtind = np.argsort([g['_ignore'] for g in gt], kind='mergesort') |
| | gt = [gt[i] for i in gtind] |
| | dtind = np.argsort([-d['score'] for d in dt], kind='mergesort') |
| | dt = [dt[i] for i in dtind[0:maxDet]] |
| | iscrowd = [int(o['iscrowd']) for o in gt] |
| | |
| | ious = self.ious[imgId, catId][:, gtind] if len(self.ious[imgId, catId]) > 0 else self.ious[imgId, catId] |
| |
|
| | T = len(p.iouThrs) |
| | G = len(gt) |
| | D = len(dt) |
| | gtm = np.zeros((T,G)) |
| | dtm = np.zeros((T,D)) |
| | gtIg = np.array([g['_ignore'] for g in gt]) |
| | dtIg = np.zeros((T,D)) |
| | if not len(ious)==0: |
| | for tind, t in enumerate(p.iouThrs): |
| | for dind, d in enumerate(dt): |
| | |
| | iou = min([t,1-1e-10]) |
| | m = -1 |
| | for gind, g in enumerate(gt): |
| | |
| | if gtm[tind,gind]>0 and not iscrowd[gind]: |
| | continue |
| | |
| | if m>-1 and gtIg[m]==0 and gtIg[gind]==1: |
| | break |
| | |
| | if ious[dind,gind] < iou: |
| | continue |
| | |
| | iou=ious[dind,gind] |
| | m=gind |
| | |
| | if m ==-1: |
| | continue |
| | dtIg[tind,dind] = gtIg[m] |
| | dtm[tind,dind] = gt[m]['id'] |
| | gtm[tind,m] = d['id'] |
| | |
| | a = np.array([d['area']<aRng[0] or d['area']>aRng[1] for d in dt]).reshape((1, len(dt))) |
| | dtIg = np.logical_or(dtIg, np.logical_and(dtm==0, np.repeat(a,T,0))) |
| | |
| | return { |
| | 'image_id': imgId, |
| | 'category_id': catId, |
| | 'aRng': aRng, |
| | 'maxDet': maxDet, |
| | 'dtIds': [d['id'] for d in dt], |
| | 'gtIds': [g['id'] for g in gt], |
| | 'dtMatches': dtm, |
| | 'gtMatches': gtm, |
| | 'dtScores': [d['score'] for d in dt], |
| | 'gtIgnore': gtIg, |
| | 'dtIgnore': dtIg, |
| | } |
| |
|
| | def accumulate(self, p = None): |
| | ''' |
| | Accumulate per image evaluation results and store the result in self.eval |
| | :param p: input params for evaluation |
| | :return: None |
| | ''' |
| | print('Accumulating evaluation results...') |
| | tic = time.time() |
| | if not self.evalImgs: |
| | print('Please run evaluate() first') |
| | |
| | if p is None: |
| | p = self.params |
| | p.catIds = p.catIds if p.useCats == 1 else [-1] |
| | T = len(p.iouThrs) |
| | R = len(p.recThrs) |
| | K = len(p.catIds) if p.useCats else 1 |
| | A = len(p.areaRng) |
| | M = len(p.maxDets) |
| | precision = -np.ones((T,R,K,A,M)) |
| | recall = -np.ones((T,K,A,M)) |
| | scores = -np.ones((T,R,K,A,M)) |
| |
|
| | |
| | _pe = self._paramsEval |
| | catIds = _pe.catIds if _pe.useCats else [-1] |
| | setK = set(catIds) |
| | setA = set(map(tuple, _pe.areaRng)) |
| | setM = set(_pe.maxDets) |
| | setI = set(_pe.imgIds) |
| | |
| | k_list = [n for n, k in enumerate(p.catIds) if k in setK] |
| | m_list = [m for n, m in enumerate(p.maxDets) if m in setM] |
| | a_list = [n for n, a in enumerate(map(lambda x: tuple(x), p.areaRng)) if a in setA] |
| | i_list = [n for n, i in enumerate(p.imgIds) if i in setI] |
| | I0 = len(_pe.imgIds) |
| | A0 = len(_pe.areaRng) |
| | |
| | for k, k0 in enumerate(k_list): |
| | Nk = k0*A0*I0 |
| | for a, a0 in enumerate(a_list): |
| | Na = a0*I0 |
| | for m, maxDet in enumerate(m_list): |
| | E = [self.evalImgs[Nk + Na + i] for i in i_list] |
| | E = [e for e in E if not e is None] |
| | if len(E) == 0: |
| | continue |
| | dtScores = np.concatenate([e['dtScores'][0:maxDet] for e in E]) |
| |
|
| | |
| | |
| | inds = np.argsort(-dtScores, kind='mergesort') |
| | dtScoresSorted = dtScores[inds] |
| |
|
| | dtm = np.concatenate([e['dtMatches'][:,0:maxDet] for e in E], axis=1)[:,inds] |
| | dtIg = np.concatenate([e['dtIgnore'][:,0:maxDet] for e in E], axis=1)[:,inds] |
| | gtIg = np.concatenate([e['gtIgnore'] for e in E]) |
| | npig = np.count_nonzero(gtIg==0 ) |
| | if npig == 0: |
| | continue |
| | tps = np.logical_and( dtm, np.logical_not(dtIg) ) |
| | fps = np.logical_and(np.logical_not(dtm), np.logical_not(dtIg) ) |
| |
|
| | tp_sum = np.cumsum(tps, axis=1).astype(dtype=float) |
| | fp_sum = np.cumsum(fps, axis=1).astype(dtype=float) |
| | for t, (tp, fp) in enumerate(zip(tp_sum, fp_sum)): |
| | tp = np.array(tp) |
| | fp = np.array(fp) |
| | nd = len(tp) |
| | rc = tp / npig |
| | pr = tp / (fp+tp+np.spacing(1)) |
| | q = np.zeros((R,)) |
| | ss = np.zeros((R,)) |
| |
|
| | if nd: |
| | recall[t,k,a,m] = rc[-1] |
| | else: |
| | recall[t,k,a,m] = 0 |
| |
|
| | |
| | |
| | pr = pr.tolist(); q = q.tolist() |
| |
|
| | for i in range(nd-1, 0, -1): |
| | if pr[i] > pr[i-1]: |
| | pr[i-1] = pr[i] |
| |
|
| | inds = np.searchsorted(rc, p.recThrs, side='left') |
| | try: |
| | for ri, pi in enumerate(inds): |
| | q[ri] = pr[pi] |
| | ss[ri] = dtScoresSorted[pi] |
| | except: |
| | pass |
| | precision[t,:,k,a,m] = np.array(q) |
| | scores[t,:,k,a,m] = np.array(ss) |
| | self.eval = { |
| | 'params': p, |
| | 'counts': [T, R, K, A, M], |
| | 'date': datetime.datetime.now().strftime('%Y-%m-%d %H:%M:%S'), |
| | 'precision': precision, |
| | 'recall': recall, |
| | 'scores': scores, |
| | } |
| | toc = time.time() |
| | print('DONE (t={:0.2f}s).'.format( toc-tic)) |
| |
|
| | def summarize(self): |
| | ''' |
| | Compute and display summary metrics for evaluation results. |
| | Note this functin can *only* be applied on the default parameter setting |
| | ''' |
| | def _summarize( ap=1, iouThr=None, areaRng='all', maxDets=100 ): |
| | p = self.params |
| | iStr = ' {:<18} {} @[ IoU={:<9} | area={:>6s} | maxDets={:>3d} ] = {:0.3f}' |
| | titleStr = 'Average Precision' if ap == 1 else 'Average Recall' |
| | typeStr = '(AP)' if ap==1 else '(AR)' |
| | iouStr = '{:0.2f}:{:0.2f}'.format(p.iouThrs[0], p.iouThrs[-1]) \ |
| | if iouThr is None else '{:0.2f}'.format(iouThr) |
| |
|
| | aind = [i for i, aRng in enumerate(p.areaRngLbl) if aRng == areaRng] |
| | mind = [i for i, mDet in enumerate(p.maxDets) if mDet == maxDets] |
| | if ap == 1: |
| | |
| | s = self.eval['precision'] |
| | |
| | if iouThr is not None: |
| | t = np.where(iouThr == p.iouThrs)[0] |
| | s = s[t] |
| | s = s[:,:,:,aind,mind] |
| | else: |
| | |
| | s = self.eval['recall'] |
| | if iouThr is not None: |
| | t = np.where(iouThr == p.iouThrs)[0] |
| | s = s[t] |
| | s = s[:,:,aind,mind] |
| | if len(s[s>-1])==0: |
| | mean_s = -1 |
| | else: |
| | mean_s = np.mean(s[s>-1]) |
| | print(iStr.format(titleStr, typeStr, iouStr, areaRng, maxDets, mean_s)) |
| | return mean_s |
| | def _summarizeDets(): |
| | stats = np.zeros((12,)) |
| | stats[0] = _summarize(1) |
| | stats[1] = _summarize(1, iouThr=.5, maxDets=self.params.maxDets[2]) |
| | stats[2] = _summarize(1, iouThr=.75, maxDets=self.params.maxDets[2]) |
| | stats[3] = _summarize(1, areaRng='small', maxDets=self.params.maxDets[2]) |
| | stats[4] = _summarize(1, areaRng='medium', maxDets=self.params.maxDets[2]) |
| | stats[5] = _summarize(1, areaRng='large', maxDets=self.params.maxDets[2]) |
| | stats[6] = _summarize(0, maxDets=self.params.maxDets[0]) |
| | stats[7] = _summarize(0, maxDets=self.params.maxDets[1]) |
| | stats[8] = _summarize(0, maxDets=self.params.maxDets[2]) |
| | stats[9] = _summarize(0, areaRng='small', maxDets=self.params.maxDets[2]) |
| | stats[10] = _summarize(0, areaRng='medium', maxDets=self.params.maxDets[2]) |
| | stats[11] = _summarize(0, areaRng='large', maxDets=self.params.maxDets[2]) |
| | return stats |
| | def _summarizeKps(): |
| | stats = np.zeros((10,)) |
| | stats[0] = _summarize(1, maxDets=20) |
| | stats[1] = _summarize(1, maxDets=20, iouThr=.5) |
| | stats[2] = _summarize(1, maxDets=20, iouThr=.75) |
| | stats[3] = _summarize(1, maxDets=20, areaRng='medium') |
| | stats[4] = _summarize(1, maxDets=20, areaRng='large') |
| | stats[5] = _summarize(0, maxDets=20) |
| | stats[6] = _summarize(0, maxDets=20, iouThr=.5) |
| | stats[7] = _summarize(0, maxDets=20, iouThr=.75) |
| | stats[8] = _summarize(0, maxDets=20, areaRng='medium') |
| | stats[9] = _summarize(0, maxDets=20, areaRng='large') |
| | return stats |
| | if not self.eval: |
| | raise Exception('Please run accumulate() first') |
| | iouType = self.params.iouType |
| | if iouType == 'segm' or iouType == 'bbox': |
| | summarize = _summarizeDets |
| | elif iouType == 'keypoints': |
| | summarize = _summarizeKps |
| | self.stats = summarize() |
| |
|
| | def __str__(self): |
| | self.summarize() |
| |
|
| | class Params: |
| | ''' |
| | Params for coco evaluation api |
| | ''' |
| | def setDetParams(self): |
| | self.imgIds = [] |
| | self.catIds = [] |
| | |
| | self.iouThrs = np.linspace(.5, 0.95, int(np.round((0.95 - .5) / .05)) + 1, endpoint=True) |
| | self.recThrs = np.linspace(.0, 1.00, int(np.round((1.00 - .0) / .01)) + 1, endpoint=True) |
| | self.maxDets = [1, 10, 100] |
| | self.areaRng = [[0 ** 2, 1e5 ** 2], [0 ** 2, 32 ** 2], [32 ** 2, 96 ** 2], [96 ** 2, 1e5 ** 2]] |
| | self.areaRngLbl = ['all', 'small', 'medium', 'large'] |
| | self.useCats = 1 |
| |
|
| | def setKpParams(self): |
| | self.imgIds = [] |
| | self.catIds = [] |
| | |
| | self.iouThrs = np.linspace(.5, 0.95, int(np.round((0.95 - .5) / .05)) + 1, endpoint=True) |
| | self.recThrs = np.linspace(.0, 1.00, int(np.round((1.00 - .0) / .01)) + 1, endpoint=True) |
| | self.maxDets = [20] |
| | self.areaRng = [[0 ** 2, 1e5 ** 2], [32 ** 2, 96 ** 2], [96 ** 2, 1e5 ** 2]] |
| | self.areaRngLbl = ['all', 'medium', 'large'] |
| | self.useCats = 1 |
| | self.kpt_oks_sigmas = np.array([.26, .25, .25, .35, .35, .79, .79, .72, .72, .62,.62, 1.07, 1.07, .87, .87, .89, .89])/10.0 |
| |
|
| | def __init__(self, iouType='segm'): |
| | if iouType == 'segm' or iouType == 'bbox': |
| | self.setDetParams() |
| | elif iouType == 'keypoints': |
| | self.setKpParams() |
| | else: |
| | raise Exception('iouType not supported') |
| | self.iouType = iouType |
| | |
| | self.useSegm = None |
| |
|