import os import datasets logger = datasets.logging.get_logger(__name__) ID_POOL = () URL = "https://huggingface.co/datasets/thewall/DeepBindWeight/resolve/main" class DeepBindWeightConfig(datasets.BuilderConfig): pass class DeepBindWeight(datasets.GeneratorBasedBuilder): BUILDER_CONFIGS = [ DeepBindWeightConfig(name=key) for key in ID_POOL ] DEFAULT_CONFIG_NAME = "params" def _info(self): return datasets.DatasetInfo( features=datasets.Features( { "config": datasets.Value("string"), "existed": datasets.Value("bool"), "selex": datasets.Value("string"), "tf": datasets.Value("string") } ), homepage="http://tools.genes.toronto.edu/deepbind", ) def _split_generators(self, dl_manager): param_url = f"{URL}/params.tar.gz" selex_url = f"{URL}/ERP001824-deepbind.xlsx" tf_url = f"{URL}/ERP001824-UniprotKB.xlsx" aptani2_url = f"{URL}/aptani2_config.tar.gz" downloaded_files = [os.path.join(f"{dl_manager.download_and_extract(param_url)}", "params")] downloaded_files.extend(dl_manager.download([selex_url, tf_url])) downloaded_files.append(f"{dl_manager.download_and_extract(aptani2_url)}") return [ datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": downloaded_files}), ] def _generate_examples(self, filepath): """This function returns the examples in the raw (text) form.""" logger.info("generating examples from = %s", filepath) flag = True for file in filepath: flag = flag and os.path.exists(file) yield 0, {"config": filepath[0], "existed": flag, "selex": filepath[1], 'tf': filepath[2]} if __name__=="__main__": from datasets import load_dataset dataset = load_dataset("thewall/deepbindweight", split="all") # dataset.push_to_hub("thewall/DeepBindWeight")