thewall commited on
Commit
4ddcc42
·
1 Parent(s): eb8b841

Update jolma_split.py

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Files changed (1) hide show
  1. jolma_split.py +7 -3
jolma_split.py CHANGED
@@ -1,3 +1,4 @@
 
1
  import re
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  import pandas as pd
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  import datasets
@@ -56,7 +57,6 @@ URL = "https://huggingface.co/datasets/thewall/jolma_split/resolve/main"
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  """
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  p70c10s61087t100 p70:70种蛋白,c10:count>10的序列,s61087:总共61087条序列,t100:小于100条序列的蛋白质划分至训练集
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  """
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-
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  class JolmaSplitConfig(datasets.BuilderConfig):
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  def __init__(self, protein_prefix="", protein_suffix="", max_length=1000, max_gene_num=1,
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  aptamer_prefix="", aptamer_suffix="", **kwargs):
@@ -121,8 +121,12 @@ class JolmaSubset(datasets.GeneratorBasedBuilder):
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  return int(pattern.search(self.get_protein_info(sra_id)["Ligand"]).group(0))
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  def _split_generators(self, dl_manager):
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- train_file = dl_manager.download(f"{URL}/{self.config.name}_train.csv.gz")
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- test_file = dl_manager.download(f"{URL}/{self.config.name}_test.csv.gz")
 
 
 
 
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  return [
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  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": train_file},),
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  datasets.SplitGenerator(name=datasets.Split.TEST, gen_kwargs={"filepath": test_file}, ),
 
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+ import os.path
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  import re
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  import pandas as pd
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  import datasets
 
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  """
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  p70c10s61087t100 p70:70种蛋白,c10:count>10的序列,s61087:总共61087条序列,t100:小于100条序列的蛋白质划分至训练集
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  """
 
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  class JolmaSplitConfig(datasets.BuilderConfig):
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  def __init__(self, protein_prefix="", protein_suffix="", max_length=1000, max_gene_num=1,
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  aptamer_prefix="", aptamer_suffix="", **kwargs):
 
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  return int(pattern.search(self.get_protein_info(sra_id)["Ligand"]).group(0))
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  def _split_generators(self, dl_manager):
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+ if self.config.data_dir is not None and os.path.exists(self.config.data_dir):
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+ train_file = os.path.join(self.config.data_dir, f"{self.config.name}_train.csv.gz")
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+ test_file = os.path.join(self.config.data_dir, f"{self.config.name}_test.csv.gz")
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+ else:
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+ train_file = dl_manager.download(f"{URL}/{self.config.name}_train.csv.gz")
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+ test_file = dl_manager.download(f"{URL}/{self.config.name}_test.csv.gz")
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  return [
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  datasets.SplitGenerator(name=datasets.Split.TRAIN, gen_kwargs={"filepath": train_file},),
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  datasets.SplitGenerator(name=datasets.Split.TEST, gen_kwargs={"filepath": test_file}, ),