thewall commited on
Commit
4096ad5
·
1 Parent(s): d08c59a

Update tg2.py

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Files changed (1) hide show
  1. tg2.py +14 -9
tg2.py CHANGED
@@ -60,6 +60,18 @@ _URLS = {
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  "round_8": "/".join([_URL, "DRR201869/DRR201869.fastq.gz"]),
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  }
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  _FORWARD_PRIMER = "TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG"
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  _REVERSE_PRIMER = "CCTATGCGTGCTAGTGTGA"
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  _DESIGN_LENGTH = 30
@@ -71,7 +83,6 @@ _DESIGN_LENGTH = 30
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  "add_reverse_primer":"CCTATGCGTGCTAGTGTGA",
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  """
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-
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  class TG2Config(datasets.BuilderConfig):
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  """BuilderConfig for SQUAD."""
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@@ -91,7 +102,7 @@ class TG2(datasets.GeneratorBasedBuilder):
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  """SQUAD: The Stanford Question Answering Dataset. Version 1.1."""
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  BUILDER_CONFIGS = [
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- TG2Config(name=key, url=_URLS[key]) for key in _URLS
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  ]
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  DEFAULT_CONFIG_NAME = "round_4"
@@ -150,10 +161,4 @@ class TG2(datasets.GeneratorBasedBuilder):
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  return False
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  if self.config.remove_primer:
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  example["seq"] = seq[len(_FORWARD_PRIMER):len(seq)-len(_REVERSE_PRIMER)]
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- return True
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-
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-
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- if __name__=="__main__":
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- from datasets import load_dataset
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- dataset = load_dataset("tg2.py", split="all")
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-
 
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  "round_8": "/".join([_URL, "DRR201869/DRR201869.fastq.gz"]),
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  }
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+ _HUGGINGFACE_URLS = {
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+ "round_0": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201861.fastq.gz",
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+ "round_1": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201862.fastq.gz",
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+ "round_2": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201863.fastq.gz",
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+ "round_3": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201864.fastq.gz",
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+ "round_4": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201865.fastq.gz",
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+ "round_5": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201866.fastq.gz",
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+ "round_6": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201867.fastq.gz",
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+ "round_7": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201868.fastq.gz",
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+ "round_8": "https://huggingface.co/datasets/thewall/tg2/resolve/main/data/DRR201869.fastq.gz",
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+ }
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+
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  _FORWARD_PRIMER = "TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG"
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  _REVERSE_PRIMER = "CCTATGCGTGCTAGTGTGA"
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  _DESIGN_LENGTH = 30
 
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  "add_reverse_primer":"CCTATGCGTGCTAGTGTGA",
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  """
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  class TG2Config(datasets.BuilderConfig):
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  """BuilderConfig for SQUAD."""
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  """SQUAD: The Stanford Question Answering Dataset. Version 1.1."""
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  BUILDER_CONFIGS = [
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+ TG2Config(name=key, url=_HUGGINGFACE_URLS[key]) for key in _URLS
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  ]
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  DEFAULT_CONFIG_NAME = "round_4"
 
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  return False
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  if self.config.remove_primer:
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  example["seq"] = seq[len(_FORWARD_PRIMER):len(seq)-len(_REVERSE_PRIMER)]
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+ return True