thewall commited on
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bc99394
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1 Parent(s): 522d832

Update tg2.py

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  1. tg2.py +17 -10
tg2.py CHANGED
@@ -46,24 +46,31 @@ To generate RNA aptamers against human transglutaminase 2, we have performed the
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  of ligands by exponential enrichment (HT-SELEX). Of the eight performed rounds, the rounds 0 to 8 have been sequenced.
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  """
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- _URL = "ftp://ftp.sra.ebi.ac.uk/vol1/fastq/DRR201"
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  _URLS = {
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- "round_0": os.path.join(_URL, "DRR201861/DRR201861.fastq.gz"),
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- "round_1": os.path.join(_URL, "DRR201862/DRR201862.fastq.gz"),
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- "round_2": os.path.join(_URL, "DRR201863/DRR201863.fastq.gz"),
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- "round_3": os.path.join(_URL, "DRR201864/DRR201864.fastq.gz"),
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- "round_4": os.path.join(_URL, "DRR201865/DRR201865.fastq.gz"),
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- "round_5": os.path.join(_URL, "DRR201866/DRR201866.fastq.gz"),
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- "round_6": os.path.join(_URL, "DRR201867/DRR201867.fastq.gz"),
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- "round_7": os.path.join(_URL, "DRR201868/DRR201868.fastq.gz"),
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- "round_8": os.path.join(_URL, "DRR201869/DRR201869.fastq.gz"),
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  }
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  _FORWARD_PRIMER = "TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG"
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  _REVERSE_PRIMER = "CCTATGCGTGCTAGTGTGA"
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  _DESIGN_LENGTH = 30
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  class TG2Config(datasets.BuilderConfig):
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  """BuilderConfig for SQUAD."""
 
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  of ligands by exponential enrichment (HT-SELEX). Of the eight performed rounds, the rounds 0 to 8 have been sequenced.
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  """
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+ _URL = "https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR201"
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  _URLS = {
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+ "round_0": "/".join([_URL, "DRR201861/DRR201861.fastq.gz"]),
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+ "round_1": "/".join([_URL, "DRR201862/DRR201862.fastq.gz"]),
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+ "round_2": "/".join([_URL, "DRR201863/DRR201863.fastq.gz"]),
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+ "round_3": "/".join([_URL, "DRR201864/DRR201864.fastq.gz"]),
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+ "round_4": "/".join([_URL, "DRR201865/DRR201865.fastq.gz"]),
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+ "round_5": "/".join([_URL, "DRR201866/DRR201866.fastq.gz"]),
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+ "round_6": "/".join([_URL, "DRR201867/DRR201867.fastq.gz"]),
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+ "round_7": "/".join([_URL, "DRR201868/DRR201868.fastq.gz"]),
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+ "round_8": "/".join([_URL, "DRR201869/DRR201869.fastq.gz"]),
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  }
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  _FORWARD_PRIMER = "TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG"
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  _REVERSE_PRIMER = "CCTATGCGTGCTAGTGTGA"
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  _DESIGN_LENGTH = 30
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+ """
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+ "forward_primer":"TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG",
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+ "reverse_primer":"CCTATGCGTGCTAGTGTGA",
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+ "add_forward_primer":"GGGAGCAGGAGAGAGGTCAGATG",
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+ "add_reverse_primer":"CCTATGCGTGCTAGTGTGA",
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+ """
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+
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  class TG2Config(datasets.BuilderConfig):
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  """BuilderConfig for SQUAD."""