Update tg2.py
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tg2.py
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@@ -46,24 +46,31 @@ To generate RNA aptamers against human transglutaminase 2, we have performed the
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of ligands by exponential enrichment (HT-SELEX). Of the eight performed rounds, the rounds 0 to 8 have been sequenced.
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"""
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_URL = "
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_URLS = {
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"round_0":
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"round_1":
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"round_2":
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"round_3":
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"round_4":
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"round_5":
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"round_6":
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"round_7":
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"round_8":
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}
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_FORWARD_PRIMER = "TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG"
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_REVERSE_PRIMER = "CCTATGCGTGCTAGTGTGA"
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_DESIGN_LENGTH = 30
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class TG2Config(datasets.BuilderConfig):
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"""BuilderConfig for SQUAD."""
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of ligands by exponential enrichment (HT-SELEX). Of the eight performed rounds, the rounds 0 to 8 have been sequenced.
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"""
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_URL = "https://ftp.sra.ebi.ac.uk/vol1/fastq/DRR201"
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_URLS = {
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"round_0": "/".join([_URL, "DRR201861/DRR201861.fastq.gz"]),
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"round_1": "/".join([_URL, "DRR201862/DRR201862.fastq.gz"]),
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"round_2": "/".join([_URL, "DRR201863/DRR201863.fastq.gz"]),
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"round_3": "/".join([_URL, "DRR201864/DRR201864.fastq.gz"]),
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"round_4": "/".join([_URL, "DRR201865/DRR201865.fastq.gz"]),
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"round_5": "/".join([_URL, "DRR201866/DRR201866.fastq.gz"]),
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"round_6": "/".join([_URL, "DRR201867/DRR201867.fastq.gz"]),
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"round_7": "/".join([_URL, "DRR201868/DRR201868.fastq.gz"]),
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"round_8": "/".join([_URL, "DRR201869/DRR201869.fastq.gz"]),
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}
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_FORWARD_PRIMER = "TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG"
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_REVERSE_PRIMER = "CCTATGCGTGCTAGTGTGA"
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_DESIGN_LENGTH = 30
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"""
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"forward_primer":"TAATACGACTCACTATAGGGAGCAGGAGAGAGGTCAGATG",
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"reverse_primer":"CCTATGCGTGCTAGTGTGA",
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"add_forward_primer":"GGGAGCAGGAGAGAGGTCAGATG",
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"add_reverse_primer":"CCTATGCGTGCTAGTGTGA",
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"""
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class TG2Config(datasets.BuilderConfig):
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"""BuilderConfig for SQUAD."""
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